Query 001039
Match_columns 1179
No_of_seqs 1261 out of 4542
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 07:50:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001039.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001039hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tw8_A DENN domain-containing 100.0 1.2E-67 4E-72 602.3 18.6 373 2-453 11-390 (391)
2 1nr0_A Actin interacting prote 100.0 4E-45 1.4E-49 457.2 53.9 386 744-1178 22-568 (611)
3 1nr0_A Actin interacting prote 100.0 6.9E-44 2.4E-48 446.1 51.5 388 737-1176 55-610 (611)
4 2ymu_A WD-40 repeat protein; u 100.0 3.3E-42 1.1E-46 427.2 53.8 354 762-1174 215-577 (577)
5 2ymu_A WD-40 repeat protein; u 100.0 6.6E-41 2.3E-45 415.6 53.9 358 761-1176 9-415 (577)
6 1pgu_A Actin interacting prote 100.0 2.2E-39 7.6E-44 404.3 50.9 373 760-1178 55-615 (615)
7 3sfz_A APAF-1, apoptotic pepti 100.0 2E-39 7E-44 439.5 45.5 382 760-1179 607-1160(1249)
8 2oaj_A Protein SNI1; WD40 repe 100.0 6.5E-39 2.2E-43 416.4 44.1 377 764-1178 13-606 (902)
9 1pgu_A Actin interacting prote 100.0 8.6E-38 2.9E-42 389.9 50.8 366 765-1178 15-573 (615)
10 2oaj_A Protein SNI1; WD40 repe 100.0 1.2E-38 3.9E-43 414.1 43.6 387 745-1178 22-665 (902)
11 1vyh_C Platelet-activating fac 100.0 2.7E-38 9.2E-43 375.3 41.2 283 761-1076 101-410 (410)
12 3ow8_A WD repeat-containing pr 100.0 4.8E-38 1.6E-42 360.2 41.7 290 819-1119 24-320 (321)
13 3sfz_A APAF-1, apoptotic pepti 100.0 1.6E-38 5.5E-43 430.7 42.3 396 741-1178 615-1208(1249)
14 1vyh_C Platelet-activating fac 100.0 4.4E-38 1.5E-42 373.5 40.6 282 820-1118 101-409 (410)
15 2ovr_B FBW7, F-BOX/WD repeat p 100.0 8.9E-37 3E-41 366.2 46.4 321 819-1178 110-443 (445)
16 3ow8_A WD repeat-containing pr 100.0 7.5E-37 2.6E-41 350.3 43.0 285 874-1176 23-320 (321)
17 1got_B GT-beta; complex (GTP-b 100.0 1.8E-36 6.1E-41 350.1 45.4 282 819-1117 47-340 (340)
18 1got_B GT-beta; complex (GTP-b 100.0 2.2E-36 7.4E-41 349.4 43.8 281 762-1074 49-340 (340)
19 1r5m_A SIR4-interacting protei 100.0 1.8E-36 6.2E-41 358.8 41.5 336 823-1176 41-424 (425)
20 1r5m_A SIR4-interacting protei 100.0 6E-36 2.1E-40 354.3 40.8 330 762-1119 39-424 (425)
21 4g56_B MGC81050 protein; prote 100.0 1.2E-36 4.1E-41 354.1 33.8 314 774-1177 11-343 (357)
22 2pbi_B Guanine nucleotide-bind 100.0 1.5E-35 5.2E-40 344.4 42.9 283 874-1174 55-354 (354)
23 2pbi_B Guanine nucleotide-bind 100.0 1.2E-35 4.2E-40 345.2 41.9 283 761-1074 57-354 (354)
24 3mkq_A Coatomer beta'-subunit; 100.0 4.2E-36 1.5E-40 388.4 42.2 382 762-1178 7-461 (814)
25 2ynn_A Coatomer subunit beta'; 100.0 2.6E-35 9E-40 334.6 43.4 283 819-1119 5-301 (304)
26 3frx_A Guanine nucleotide-bind 100.0 3.5E-35 1.2E-39 336.1 44.1 293 873-1178 7-318 (319)
27 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4.6E-35 1.6E-39 351.2 46.9 319 761-1120 111-442 (445)
28 2ynn_A Coatomer subunit beta'; 100.0 4.3E-35 1.5E-39 332.8 43.7 286 874-1178 4-303 (304)
29 3fm0_A Protein CIAO1; WDR39,SG 100.0 4.3E-35 1.5E-39 339.3 43.6 301 872-1179 4-337 (345)
30 4gqb_B Methylosome protein 50; 100.0 1.9E-35 6.5E-40 341.8 38.9 291 765-1077 27-331 (344)
31 3iz6_a 40S ribosomal protein R 100.0 2.9E-36 9.8E-41 354.1 32.4 302 861-1178 46-376 (380)
32 4gqb_B Methylosome protein 50; 100.0 1E-35 3.6E-40 344.0 36.4 291 825-1178 28-332 (344)
33 4ery_A WD repeat-containing pr 100.0 1E-34 3.5E-39 330.5 43.7 287 872-1176 12-311 (312)
34 4ery_A WD repeat-containing pr 100.0 7.7E-35 2.6E-39 331.5 41.4 282 762-1076 17-311 (312)
35 4g56_B MGC81050 protein; prote 100.0 1.4E-35 4.9E-40 345.0 36.0 286 764-1078 38-344 (357)
36 3iz6_a 40S ribosomal protein R 100.0 6.4E-36 2.2E-40 351.1 32.2 285 762-1077 60-375 (380)
37 3fm0_A Protein CIAO1; WDR39,SG 100.0 4.8E-35 1.6E-39 338.9 38.2 289 763-1079 10-337 (345)
38 4aow_A Guanine nucleotide-bind 100.0 3.4E-34 1.2E-38 329.1 43.0 313 856-1179 9-339 (340)
39 2pm9_A Protein WEB1, protein t 100.0 1.8E-36 6E-41 358.8 24.5 335 827-1178 12-415 (416)
40 3frx_A Guanine nucleotide-bind 100.0 5E-34 1.7E-38 326.5 44.0 285 818-1119 8-316 (319)
41 2xzm_R RACK1; ribosome, transl 100.0 2.5E-34 8.7E-39 332.4 41.9 297 874-1178 12-341 (343)
42 3vl1_A 26S proteasome regulato 100.0 5.7E-35 2E-39 346.7 37.4 319 849-1177 66-419 (420)
43 2hes_X YDR267CP; beta-propelle 100.0 3.3E-34 1.1E-38 329.6 41.6 285 819-1119 6-327 (330)
44 1erj_A Transcriptional repress 100.0 3.1E-34 1.1E-38 338.3 42.3 299 763-1077 59-389 (393)
45 1gxr_A ESG1, transducin-like e 100.0 2.4E-34 8.4E-39 329.3 39.5 314 826-1175 8-335 (337)
46 2hes_X YDR267CP; beta-propelle 100.0 6.4E-34 2.2E-38 327.3 42.1 293 873-1178 4-329 (330)
47 1gxr_A ESG1, transducin-like e 100.0 1.1E-33 3.7E-38 323.9 43.8 314 767-1118 8-335 (337)
48 1erj_A Transcriptional repress 100.0 2.2E-33 7.6E-38 331.0 44.6 280 881-1177 62-389 (393)
49 3v7d_B Cell division control p 100.0 1.2E-32 4.1E-37 331.8 50.5 316 819-1174 113-460 (464)
50 3v7d_B Cell division control p 100.0 2.9E-33 9.9E-38 337.2 45.0 314 762-1116 115-459 (464)
51 2pm9_A Protein WEB1, protein t 100.0 1.8E-35 6.2E-40 350.1 23.9 324 768-1120 12-414 (416)
52 4aow_A Guanine nucleotide-bind 100.0 2.7E-33 9.2E-38 321.6 41.0 286 764-1078 34-338 (340)
53 2xzm_R RACK1; ribosome, transl 100.0 1.7E-33 5.7E-38 325.5 39.1 286 763-1077 16-340 (343)
54 3gre_A Serine/threonine-protei 100.0 3.9E-34 1.3E-38 342.0 34.9 336 775-1174 34-437 (437)
55 2j04_B YDR362CP, TAU91; beta p 100.0 5.2E-35 1.8E-39 355.7 25.2 334 826-1177 132-517 (524)
56 3zwl_B Eukaryotic translation 100.0 1.4E-32 4.8E-37 318.7 42.1 300 819-1178 24-347 (369)
57 3mkq_A Coatomer beta'-subunit; 100.0 1.9E-32 6.6E-37 354.1 46.3 340 819-1177 5-386 (814)
58 3vl1_A 26S proteasome regulato 100.0 2.4E-33 8E-38 332.8 33.5 313 772-1119 60-418 (420)
59 1k8k_C P40, ARP2/3 complex 41 100.0 4E-33 1.4E-37 324.4 34.2 323 822-1178 3-362 (372)
60 1p22_A F-BOX/WD-repeat protein 100.0 1.2E-32 4.1E-37 329.3 38.8 286 877-1178 127-415 (435)
61 1sq9_A Antiviral protein SKI8; 100.0 6.8E-33 2.3E-37 326.0 35.7 287 875-1179 8-397 (397)
62 3dm0_A Maltose-binding peripla 100.0 5.9E-32 2E-36 343.4 45.3 306 820-1177 375-693 (694)
63 3zwl_B Eukaryotic translation 100.0 7.9E-32 2.7E-36 312.4 41.5 289 754-1077 18-346 (369)
64 3odt_A Protein DOA1; ubiquitin 100.0 9.2E-32 3.1E-36 304.6 40.4 279 762-1078 12-297 (313)
65 1p22_A F-BOX/WD-repeat protein 100.0 4E-32 1.4E-36 324.8 37.8 281 820-1121 126-415 (435)
66 3k26_A Polycomb protein EED; W 100.0 4.6E-32 1.6E-36 314.2 34.0 289 821-1119 12-365 (366)
67 1sq9_A Antiviral protein SKI8; 100.0 7.6E-32 2.6E-36 317.1 34.5 284 819-1120 8-395 (397)
68 3ei3_B DNA damage-binding prot 100.0 1E-31 3.4E-36 315.0 35.4 277 763-1077 68-382 (383)
69 3odt_A Protein DOA1; ubiquitin 100.0 1E-30 3.5E-35 296.0 42.0 280 872-1178 7-297 (313)
70 3dm0_A Maltose-binding peripla 100.0 2.3E-31 7.8E-36 338.0 40.8 285 764-1077 378-693 (694)
71 3i2n_A WD repeat-containing pr 100.0 1.6E-31 5.4E-36 308.8 35.7 282 764-1077 14-353 (357)
72 4a11_B DNA excision repair pro 100.0 1.8E-31 6.2E-36 314.2 36.3 335 761-1119 36-404 (408)
73 3ei3_B DNA damage-binding prot 100.0 1.9E-31 6.4E-36 312.7 36.2 285 872-1177 62-382 (383)
74 3k26_A Polycomb protein EED; W 100.0 1.7E-31 5.8E-36 309.4 34.9 288 877-1177 12-366 (366)
75 4a11_B DNA excision repair pro 100.0 2.9E-31 9.9E-36 312.4 36.8 318 789-1178 24-366 (408)
76 3i2n_A WD repeat-containing pr 100.0 4.4E-31 1.5E-35 305.1 36.7 304 874-1178 9-354 (357)
77 1k8k_C P40, ARP2/3 complex 41 100.0 5.9E-31 2E-35 306.1 36.5 283 765-1077 5-361 (372)
78 3dwl_C Actin-related protein 2 100.0 1.5E-32 5.2E-37 321.0 22.4 327 821-1175 5-377 (377)
79 3gre_A Serine/threonine-protei 100.0 2E-31 6.9E-36 318.4 31.9 302 747-1074 35-437 (437)
80 4aez_A CDC20, WD repeat-contai 100.0 1.1E-30 3.9E-35 308.6 37.2 286 760-1079 83-382 (401)
81 2pm7_B Protein transport prote 100.0 1.2E-30 4.3E-35 295.0 35.6 253 820-1084 2-292 (297)
82 2j04_A TAU60, YPL007P, hypothe 100.0 2.6E-32 8.9E-37 323.4 22.2 308 769-1166 16-350 (588)
83 4e54_B DNA damage-binding prot 100.0 8.3E-32 2.9E-36 322.1 27.0 301 819-1179 111-432 (435)
84 2j04_B YDR362CP, TAU91; beta p 100.0 2.3E-32 7.9E-37 332.5 22.4 318 776-1120 169-517 (524)
85 4gga_A P55CDC, cell division c 100.0 2.8E-30 9.6E-35 307.3 39.0 271 773-1078 110-396 (420)
86 4aez_A CDC20, WD repeat-contai 100.0 2.9E-30 9.9E-35 305.1 37.6 266 851-1121 103-381 (401)
87 4ggc_A P55CDC, cell division c 100.0 8.1E-30 2.8E-34 289.5 39.5 271 772-1077 29-315 (318)
88 4h5i_A Guanine nucleotide-exch 100.0 7.8E-31 2.7E-35 306.0 31.6 293 827-1178 14-344 (365)
89 4e54_B DNA damage-binding prot 100.0 2E-31 6.9E-36 318.8 26.5 284 764-1079 115-432 (435)
90 3dwl_C Actin-related protein 2 100.0 1.3E-31 4.4E-36 313.1 22.6 279 766-1075 9-377 (377)
91 3jrp_A Fusion protein of prote 100.0 7.3E-30 2.5E-34 297.2 36.3 257 819-1087 3-297 (379)
92 4gga_A P55CDC, cell division c 100.0 3.7E-29 1.3E-33 297.6 41.3 272 830-1120 108-395 (420)
93 3f3f_A Nucleoporin SEH1; struc 100.0 3.3E-30 1.1E-34 295.3 30.9 303 763-1090 6-350 (351)
94 3bg1_A Protein SEC13 homolog; 100.0 1E-30 3.4E-35 298.6 25.6 257 821-1089 7-305 (316)
95 2pm7_B Protein transport prote 100.0 2.5E-29 8.6E-34 284.3 34.7 243 877-1119 3-284 (297)
96 1yfq_A Cell cycle arrest prote 100.0 3.1E-29 1.1E-33 288.1 34.5 280 820-1118 4-322 (342)
97 3f3f_A Nucleoporin SEH1; struc 100.0 2.1E-29 7E-34 288.6 32.7 284 877-1178 5-338 (351)
98 4h5i_A Guanine nucleotide-exch 100.0 1.2E-29 4.1E-34 295.9 30.1 296 768-1077 14-343 (365)
99 3mmy_A MRNA export factor; mRN 100.0 6.1E-29 2.1E-33 287.9 35.5 287 872-1175 28-344 (368)
100 1yfq_A Cell cycle arrest prote 100.0 7.2E-29 2.5E-33 285.1 34.8 273 877-1169 5-315 (342)
101 3dw8_B Serine/threonine-protei 100.0 7.6E-29 2.6E-33 296.4 34.8 291 882-1177 27-446 (447)
102 4ggc_A P55CDC, cell division c 100.0 9.8E-28 3.4E-32 272.3 42.1 271 830-1119 28-314 (318)
103 3bg1_A Protein SEC13 homolog; 100.0 1.2E-29 4.2E-34 289.6 26.3 248 918-1176 8-292 (316)
104 3dw8_B Serine/threonine-protei 100.0 9.2E-29 3.1E-33 295.7 32.4 289 765-1076 25-445 (447)
105 3mmy_A MRNA export factor; mRN 100.0 1.5E-28 5.1E-33 284.6 33.0 282 819-1119 31-345 (368)
106 3jro_A Fusion protein of prote 100.0 3E-29 1E-33 320.9 25.4 251 820-1082 2-290 (753)
107 3jrp_A Fusion protein of prote 100.0 5.6E-28 1.9E-32 281.2 33.8 255 913-1177 1-287 (379)
108 3vu4_A KMHSV2; beta-propeller 100.0 2.2E-27 7.5E-32 275.7 34.0 278 819-1119 11-335 (355)
109 2aq5_A Coronin-1A; WD40 repeat 100.0 8.9E-28 3.1E-32 283.7 29.6 276 773-1077 39-342 (402)
110 2aq5_A Coronin-1A; WD40 repeat 100.0 1E-27 3.4E-32 283.3 28.9 277 887-1178 40-343 (402)
111 2j04_A TAU60, YPL007P, hypothe 100.0 1.2E-28 4.2E-33 292.0 19.9 293 745-1109 20-350 (588)
112 3vu4_A KMHSV2; beta-propeller 100.0 5.5E-27 1.9E-31 272.3 32.0 292 873-1177 9-336 (355)
113 3bws_A Protein LP49; two-domai 100.0 2.4E-25 8.1E-30 265.1 44.9 300 856-1177 94-432 (433)
114 2w18_A PALB2, fancn, partner a 100.0 2.3E-26 8E-31 256.7 30.6 254 782-1075 56-355 (356)
115 2xyi_A Probable histone-bindin 100.0 3E-26 1E-30 273.4 33.2 246 820-1077 121-410 (430)
116 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3E-26 1E-30 275.0 33.3 295 769-1077 5-391 (450)
117 2vdu_B TRNA (guanine-N(7)-)-me 100.0 5.6E-26 1.9E-30 272.8 35.3 279 882-1176 5-390 (450)
118 3lrv_A PRE-mRNA-splicing facto 100.0 9.9E-27 3.4E-31 268.6 27.1 263 890-1176 45-332 (343)
119 4gq1_A NUP37; propeller, trans 99.9 5E-27 1.7E-31 276.7 20.9 249 888-1175 96-387 (393)
120 1l0q_A Surface layer protein; 99.9 1.1E-24 3.7E-29 255.6 40.6 261 852-1122 3-277 (391)
121 3bws_A Protein LP49; two-domai 99.9 9.9E-25 3.4E-29 259.8 40.5 280 819-1119 115-431 (433)
122 3lrv_A PRE-mRNA-splicing facto 99.9 4.1E-26 1.4E-30 263.4 27.3 270 775-1119 43-332 (343)
123 1l0q_A Surface layer protein; 99.9 2.6E-24 8.7E-29 252.5 42.6 297 781-1119 3-341 (391)
124 3jro_A Fusion protein of prote 99.9 3.4E-26 1.2E-30 292.6 28.8 252 916-1177 2-285 (753)
125 4gq1_A NUP37; propeller, trans 99.9 2.7E-26 9.2E-31 270.4 25.6 251 825-1076 67-388 (393)
126 2xyi_A Probable histone-bindin 99.9 6.2E-26 2.1E-30 270.7 28.0 271 905-1178 109-411 (430)
127 2w18_A PALB2, fancn, partner a 99.9 7.3E-25 2.5E-29 244.7 29.6 260 895-1176 56-356 (356)
128 1nir_A Nitrite reductase; hemo 99.9 3.2E-23 1.1E-27 253.8 37.7 315 849-1179 147-516 (543)
129 1k32_A Tricorn protease; prote 99.9 7.6E-24 2.6E-28 281.0 34.3 360 757-1178 41-462 (1045)
130 1nir_A Nitrite reductase; hemo 99.9 8.2E-23 2.8E-27 250.2 38.1 314 775-1121 144-515 (543)
131 1k32_A Tricorn protease; prote 99.9 5.9E-23 2E-27 272.5 38.5 399 757-1179 88-602 (1045)
132 2hqs_A Protein TOLB; TOLB, PAL 99.9 4.4E-22 1.5E-26 236.0 31.6 287 849-1159 72-410 (415)
133 2ecf_A Dipeptidyl peptidase IV 99.9 3E-21 1E-25 246.7 33.9 317 827-1177 36-459 (741)
134 2ecf_A Dipeptidyl peptidase IV 99.9 7.7E-21 2.6E-25 242.9 36.9 317 768-1121 36-460 (741)
135 2hqs_A Protein TOLB; TOLB, PAL 99.9 6.7E-21 2.3E-25 225.9 31.0 266 889-1178 70-388 (415)
136 1xfd_A DIP, dipeptidyl aminope 99.9 5.9E-21 2E-25 243.2 30.0 344 771-1165 19-428 (723)
137 3u4y_A Uncharacterized protein 99.8 1.5E-18 5.2E-23 198.2 34.6 279 889-1178 5-305 (331)
138 2z3z_A Dipeptidyl aminopeptida 99.8 7E-19 2.4E-23 223.4 33.0 272 828-1122 82-437 (706)
139 3vgz_A Uncharacterized protein 99.8 6.2E-18 2.1E-22 194.5 37.3 260 888-1167 47-334 (353)
140 2z3z_A Dipeptidyl aminopeptida 99.8 9.8E-19 3.4E-23 222.1 32.3 302 851-1178 35-436 (706)
141 1ri6_A Putative isomerase YBHE 99.8 2.4E-18 8.1E-23 196.9 31.7 267 895-1176 7-307 (343)
142 3vgz_A Uncharacterized protein 99.8 9.2E-18 3.1E-22 193.1 36.2 267 765-1068 37-335 (353)
143 3u4y_A Uncharacterized protein 99.8 7.7E-18 2.6E-22 192.3 33.8 267 850-1121 9-305 (331)
144 1pby_B Quinohemoprotein amine 99.8 4.7E-18 1.6E-22 193.9 30.5 262 894-1179 2-312 (337)
145 1ri6_A Putative isomerase YBHE 99.8 9.6E-18 3.3E-22 191.8 32.8 240 824-1077 34-308 (343)
146 2ojh_A Uncharacterized protein 99.8 1.4E-18 4.7E-23 193.7 24.5 251 899-1168 18-293 (297)
147 1xfd_A DIP, dipeptidyl aminope 99.8 9.4E-19 3.2E-23 222.8 26.3 303 848-1177 25-393 (723)
148 1pby_B Quinohemoprotein amine 99.8 2.2E-17 7.4E-22 188.3 29.7 259 852-1121 2-311 (337)
149 3o4h_A Acylamino-acid-releasin 99.8 6.7E-18 2.3E-22 209.3 25.7 263 769-1076 22-314 (582)
150 2ojh_A Uncharacterized protein 99.8 1.3E-17 4.3E-22 185.8 25.3 243 790-1068 24-293 (297)
151 3hfq_A Uncharacterized protein 99.8 1.9E-16 6.5E-21 182.3 34.2 265 902-1178 15-320 (347)
152 1z68_A Fibroblast activation p 99.8 1.5E-17 5.2E-22 211.6 24.9 313 848-1179 24-445 (719)
153 1z68_A Fibroblast activation p 99.8 1.5E-17 5.2E-22 211.6 22.9 313 773-1122 20-445 (719)
154 3scy_A Hypothetical bacterial 99.7 2.6E-15 9E-20 173.8 38.4 292 850-1155 12-360 (361)
155 1jmx_B Amine dehydrogenase; ox 99.7 4.1E-16 1.4E-20 178.8 28.2 259 889-1178 7-326 (349)
156 3o4h_A Acylamino-acid-releasin 99.7 2.8E-16 9.5E-21 194.8 27.5 263 883-1176 21-314 (582)
157 2oit_A Nucleoporin 214KDA; NH2 99.7 5.9E-16 2E-20 184.1 27.8 235 828-1076 37-332 (434)
158 3hfq_A Uncharacterized protein 99.7 3.6E-15 1.2E-19 171.6 33.2 240 824-1076 36-316 (347)
159 2oit_A Nucleoporin 214KDA; NH2 99.7 3.6E-16 1.2E-20 186.0 23.9 209 861-1078 23-279 (434)
160 3scy_A Hypothetical bacterial 99.7 6.4E-15 2.2E-19 170.6 33.9 268 894-1176 14-336 (361)
161 1jmx_B Amine dehydrogenase; ox 99.7 2.9E-15 9.9E-20 171.7 30.5 256 846-1121 6-326 (349)
162 3pe7_A Oligogalacturonate lyas 99.7 2.8E-15 9.5E-20 175.1 30.4 285 873-1176 20-381 (388)
163 4a5s_A Dipeptidyl peptidase 4 99.7 3.3E-15 1.1E-19 190.6 32.1 318 829-1178 18-450 (740)
164 3pe7_A Oligogalacturonate lyas 99.7 2.7E-15 9.3E-20 175.2 25.7 280 761-1076 23-381 (388)
165 2oiz_A Aromatic amine dehydrog 99.7 1.6E-14 5.6E-19 167.4 27.8 264 891-1178 13-335 (361)
166 1jof_A Carboxy-CIS,CIS-muconat 99.7 1.5E-14 5E-19 168.1 27.3 271 895-1178 4-342 (365)
167 3c5m_A Oligogalacturonate lyas 99.6 7.5E-15 2.6E-19 171.6 23.7 283 847-1175 43-380 (396)
168 2oiz_A Aromatic amine dehydrog 99.6 3.2E-13 1.1E-17 156.5 33.7 290 849-1159 13-360 (361)
169 4a5s_A Dipeptidyl peptidase 4 99.6 4.4E-14 1.5E-18 180.2 26.6 313 771-1121 19-450 (740)
170 3azo_A Aminopeptidase; POP fam 99.6 3.5E-14 1.2E-18 178.7 25.0 284 820-1122 16-371 (662)
171 3c5m_A Oligogalacturonate lyas 99.6 1.8E-14 6.2E-19 168.3 20.5 267 771-1076 38-381 (396)
172 1jof_A Carboxy-CIS,CIS-muconat 99.6 4E-13 1.4E-17 156.0 31.1 266 854-1120 5-341 (365)
173 3dsm_A Uncharacterized protein 99.6 6.8E-13 2.3E-17 151.6 29.3 256 901-1176 15-301 (328)
174 3azo_A Aminopeptidase; POP fam 99.5 2.3E-13 7.8E-18 171.2 25.2 283 759-1075 58-409 (662)
175 1qks_A Cytochrome CD1 nitrite 99.5 3.3E-11 1.1E-15 147.0 43.1 321 849-1179 165-540 (567)
176 1qks_A Cytochrome CD1 nitrite 99.5 3.1E-11 1E-15 147.3 40.4 306 782-1121 169-539 (567)
177 1q7f_A NHL, brain tumor CG1071 99.5 7.5E-12 2.5E-16 139.5 31.8 233 921-1177 27-280 (286)
178 3fvz_A Peptidyl-glycine alpha- 99.5 1.1E-11 3.6E-16 141.7 33.2 236 827-1077 23-322 (329)
179 3fvz_A Peptidyl-glycine alpha- 99.5 4.9E-12 1.7E-16 144.4 29.6 235 924-1177 24-322 (329)
180 1q7f_A NHL, brain tumor CG1071 99.5 2E-11 6.8E-16 136.0 33.3 233 825-1077 27-280 (286)
181 2gop_A Trilobed protease; beta 99.5 7.7E-12 2.6E-16 143.4 27.9 254 769-1076 15-330 (347)
182 2dg1_A DRP35, lactonase; beta 99.5 1.2E-11 4.1E-16 141.0 29.3 261 889-1167 13-300 (333)
183 2dg1_A DRP35, lactonase; beta 99.5 1.3E-11 4.4E-16 140.8 29.4 260 770-1068 7-301 (333)
184 2gop_A Trilobed protease; beta 99.5 1.4E-11 4.9E-16 141.1 29.9 246 892-1176 23-330 (347)
185 2mad_H Methylamine dehydrogena 99.5 1.2E-10 4.2E-15 135.1 37.4 268 890-1179 29-352 (373)
186 2xdw_A Prolyl endopeptidase; a 99.4 3.8E-11 1.3E-15 152.3 32.5 240 825-1079 122-416 (710)
187 2bkl_A Prolyl endopeptidase; m 99.4 7.3E-12 2.5E-16 158.4 24.8 241 825-1079 118-399 (695)
188 2xdw_A Prolyl endopeptidase; a 99.4 5E-11 1.7E-15 151.2 31.2 272 890-1179 80-416 (710)
189 2z2n_A Virginiamycin B lyase; 99.4 1.3E-09 4.5E-14 121.4 39.1 273 882-1178 13-296 (299)
190 2z2n_A Virginiamycin B lyase; 99.4 1.9E-09 6.3E-14 120.1 39.8 276 823-1120 10-295 (299)
191 3e5z_A Putative gluconolactona 99.4 6.1E-11 2.1E-15 132.9 27.5 240 914-1177 18-286 (296)
192 3sjl_D Methylamine dehydrogena 99.4 2E-10 6.7E-15 131.8 31.9 268 890-1179 41-365 (386)
193 3q7m_A Lipoprotein YFGL, BAMB; 99.4 4.5E-10 1.5E-14 130.5 33.8 295 851-1174 53-375 (376)
194 3no2_A Uncharacterized protein 99.3 2.3E-10 7.9E-15 127.0 28.2 209 849-1065 3-231 (276)
195 3no2_A Uncharacterized protein 99.3 1.5E-10 5E-15 128.5 26.3 214 932-1164 3-230 (276)
196 2bkl_A Prolyl endopeptidase; m 99.3 2.8E-11 9.6E-16 153.0 23.2 267 849-1122 77-399 (695)
197 3dsm_A Uncharacterized protein 99.3 3.8E-10 1.3E-14 128.7 30.3 252 859-1119 15-301 (328)
198 3e5z_A Putative gluconolactona 99.3 2.3E-10 7.8E-15 128.2 27.2 237 819-1077 19-286 (296)
199 1rwi_B Serine/threonine-protei 99.3 1.7E-10 5.7E-15 127.0 24.5 233 925-1177 25-264 (270)
200 3q7m_A Lipoprotein YFGL, BAMB; 99.3 1.3E-09 4.4E-14 126.6 32.9 258 850-1117 102-375 (376)
201 3c75_H MADH, methylamine dehyd 99.3 4.8E-10 1.6E-14 130.9 28.8 268 891-1179 82-404 (426)
202 1rwi_B Serine/threonine-protei 99.3 2.4E-10 8.3E-15 125.7 25.0 233 829-1077 25-264 (270)
203 1yr2_A Prolyl oligopeptidase; 99.3 2.2E-10 7.7E-15 145.8 26.9 237 826-1078 161-442 (741)
204 2mad_H Methylamine dehydrogena 99.3 8.7E-09 3E-13 119.4 36.6 263 775-1079 27-352 (373)
205 1yr2_A Prolyl oligopeptidase; 99.2 4.1E-10 1.4E-14 143.4 25.3 270 849-1122 116-443 (741)
206 2qc5_A Streptogramin B lactona 99.2 2.5E-08 8.7E-13 110.9 36.6 270 767-1075 18-298 (300)
207 3sjl_D Methylamine dehydrogena 99.2 8.8E-09 3E-13 118.1 32.0 267 773-1079 37-365 (386)
208 1kb0_A Quinohemoprotein alcoho 99.2 3E-09 1E-13 133.3 30.7 266 851-1121 77-508 (677)
209 2qc5_A Streptogramin B lactona 99.2 4.8E-08 1.6E-12 108.6 37.4 270 826-1118 18-298 (300)
210 1yiq_A Quinohemoprotein alcoho 99.2 4.4E-09 1.5E-13 132.0 29.8 264 851-1120 70-505 (689)
211 1pjx_A Dfpase, DIISOPROPYLFLUO 99.1 2.2E-08 7.5E-13 112.5 29.6 239 822-1077 12-299 (314)
212 3hrp_A Uncharacterized protein 99.1 1.7E-07 5.7E-12 110.1 37.9 248 924-1176 131-409 (409)
213 3c75_H MADH, methylamine dehyd 99.1 2.9E-08 9.8E-13 115.9 30.9 257 790-1087 101-409 (426)
214 1pjx_A Dfpase, DIISOPROPYLFLUO 99.1 1.6E-08 5.4E-13 113.7 27.9 226 888-1119 24-298 (314)
215 3hxj_A Pyrrolo-quinoline quino 99.1 1.5E-09 5E-14 123.2 19.2 292 775-1119 26-323 (330)
216 3hrp_A Uncharacterized protein 99.1 3.6E-08 1.2E-12 115.8 29.9 222 849-1075 140-408 (409)
217 3hxj_A Pyrrolo-quinoline quino 99.1 1.5E-09 5.3E-14 123.0 17.3 290 851-1176 30-323 (330)
218 1mda_H Methylamine dehydrogena 99.1 8.9E-09 3E-13 118.3 23.2 247 904-1179 47-348 (368)
219 1xip_A Nucleoporin NUP159; bet 99.1 3.1E-09 1.1E-13 122.4 19.1 172 883-1065 39-232 (388)
220 4a2l_A BT_4663, two-component 99.0 2E-06 6.7E-11 110.3 45.2 357 769-1178 88-481 (795)
221 1kb0_A Quinohemoprotein alcoho 99.0 5.7E-08 1.9E-12 121.6 30.0 267 850-1119 127-566 (677)
222 1yiq_A Quinohemoprotein alcoho 99.0 1.8E-08 6.3E-13 126.3 25.2 187 892-1080 69-341 (689)
223 3g4e_A Regucalcin; six bladed 99.0 2.6E-07 9E-12 103.3 32.2 226 921-1165 10-260 (297)
224 1xip_A Nucleoporin NUP159; bet 99.0 5.1E-09 1.7E-13 120.6 18.3 182 770-983 39-232 (388)
225 4a2l_A BT_4663, two-component 99.0 1.3E-06 4.6E-11 111.9 42.6 356 771-1178 133-527 (795)
226 3iuj_A Prolyl endopeptidase; h 99.0 2.7E-08 9.2E-13 125.5 25.7 237 826-1078 127-406 (693)
227 3g4e_A Regucalcin; six bladed 98.9 5.2E-07 1.8E-11 100.9 31.3 209 850-1066 24-261 (297)
228 3iuj_A Prolyl endopeptidase; h 98.9 5.1E-08 1.7E-12 122.9 24.6 238 922-1178 127-406 (693)
229 3dr2_A Exported gluconolactona 98.9 1.3E-07 4.5E-12 106.2 25.1 230 917-1171 38-301 (305)
230 2qe8_A Uncharacterized protein 98.9 1.1E-07 3.8E-12 108.8 24.5 249 888-1167 23-311 (343)
231 1kv9_A Type II quinohemoprotei 98.9 1.8E-07 6.1E-12 117.0 27.6 265 851-1121 66-489 (668)
232 2hz6_A Endoplasmic reticulum t 98.9 5.8E-10 2E-14 129.3 4.6 256 850-1119 8-278 (369)
233 2hz6_A Endoplasmic reticulum t 98.9 7.9E-10 2.7E-14 128.2 4.5 178 933-1119 8-191 (369)
234 2ghs_A AGR_C_1268P; regucalcin 98.8 2.3E-06 8E-11 97.0 31.8 209 849-1067 58-292 (326)
235 3dr2_A Exported gluconolactona 98.8 4.2E-07 1.4E-11 102.1 25.1 229 819-1069 36-299 (305)
236 2ghs_A AGR_C_1268P; regucalcin 98.8 2.7E-06 9.2E-11 96.5 30.8 213 888-1110 55-292 (326)
237 3v9f_A Two-component system se 98.8 6.2E-05 2.1E-09 96.1 45.6 356 769-1178 66-479 (781)
238 2ad6_A Methanol dehydrogenase 98.8 2.7E-06 9.2E-11 104.1 30.8 226 892-1120 114-494 (571)
239 1mda_H Methylamine dehydrogena 98.7 4E-07 1.4E-11 104.4 21.2 252 789-1089 47-355 (368)
240 3v9f_A Two-component system se 98.7 0.0002 6.9E-09 91.4 48.8 319 828-1178 66-437 (781)
241 2qe8_A Uncharacterized protein 98.7 6.1E-07 2.1E-11 102.6 22.6 232 828-1074 17-318 (343)
242 2ece_A 462AA long hypothetical 98.7 4.9E-06 1.7E-10 95.9 29.6 218 934-1165 95-399 (462)
243 1w6s_A Methanol dehydrogenase 98.7 5.3E-06 1.8E-10 101.5 30.1 265 851-1120 62-503 (599)
244 1kv9_A Type II quinohemoprotei 98.6 1.7E-06 6E-11 108.0 25.0 186 892-1080 65-336 (668)
245 1flg_A Protein (quinoprotein e 98.6 2.6E-05 8.7E-10 95.6 32.7 226 892-1120 116-516 (582)
246 2ece_A 462AA long hypothetical 98.6 1.8E-05 6.3E-10 91.2 28.6 218 891-1108 93-399 (462)
247 2ad6_A Methanol dehydrogenase 98.5 1.9E-05 6.4E-10 96.6 29.4 184 893-1080 62-338 (571)
248 1npe_A Nidogen, entactin; glyc 98.5 0.00011 3.7E-09 80.4 32.8 217 828-1059 36-263 (267)
249 1npe_A Nidogen, entactin; glyc 98.5 0.00012 4.3E-09 79.8 32.4 221 894-1120 2-238 (267)
250 1w6s_A Methanol dehydrogenase 98.5 3.9E-05 1.3E-09 93.8 30.4 186 893-1081 62-346 (599)
251 2iwa_A Glutamine cyclotransfer 98.5 1.1E-05 3.8E-10 87.5 22.6 186 888-1077 27-237 (266)
252 3nol_A Glutamine cyclotransfer 98.5 2.1E-05 7E-10 84.4 23.4 174 889-1066 50-244 (262)
253 1fwx_A Nitrous oxide reductase 98.5 1.8E-06 6.3E-11 102.9 16.6 265 891-1179 99-433 (595)
254 1flg_A Protein (quinoprotein e 98.4 0.00014 4.8E-09 89.0 32.3 186 893-1080 68-358 (582)
255 3mbr_X Glutamine cyclotransfer 98.3 0.00028 9.6E-09 75.0 27.0 189 874-1066 10-223 (243)
256 2iwa_A Glutamine cyclotransfer 98.3 0.00031 1.1E-08 76.1 27.7 203 913-1120 9-237 (266)
257 3nok_A Glutaminyl cyclase; bet 98.3 4E-05 1.4E-09 82.1 20.2 174 888-1065 59-253 (268)
258 1k3i_A Galactose oxidase precu 98.3 4E-05 1.4E-09 95.8 23.7 265 888-1166 192-530 (656)
259 3nol_A Glutamine cyclotransfer 98.2 0.00019 6.6E-09 76.9 24.0 192 914-1109 32-244 (262)
260 3nok_A Glutaminyl cyclase; bet 98.2 0.00013 4.4E-09 78.3 21.6 160 914-1079 44-212 (268)
261 1k3i_A Galactose oxidase precu 98.1 3.7E-05 1.2E-09 96.1 19.3 265 773-1066 190-530 (656)
262 3mbr_X Glutamine cyclotransfer 98.1 0.0006 2E-08 72.5 24.5 162 914-1079 10-181 (243)
263 1fwx_A Nitrous oxide reductase 98.1 0.00012 4E-09 87.5 20.7 231 849-1086 99-439 (595)
264 2p4o_A Hypothetical protein; p 98.1 0.0036 1.2E-07 69.7 31.8 233 913-1166 22-277 (306)
265 3s94_A LRP-6, low-density lipo 98.1 0.033 1.1E-06 68.4 42.7 349 768-1164 39-452 (619)
266 2fp8_A Strictosidine synthase; 98.0 0.001 3.4E-08 74.8 27.0 234 925-1177 20-313 (322)
267 3v64_C Agrin; beta propeller, 98.0 0.0056 1.9E-07 69.6 32.5 240 772-1044 37-284 (349)
268 2fp8_A Strictosidine synthase; 98.0 0.0019 6.4E-08 72.6 27.0 225 888-1119 25-312 (322)
269 2xbg_A YCF48-like protein; pho 98.0 0.011 3.7E-07 66.6 33.2 271 827-1118 35-320 (327)
270 3v65_B Low-density lipoprotein 97.9 0.0052 1.8E-07 71.0 30.6 247 774-1053 82-336 (386)
271 1ijq_A LDL receptor, low-densi 97.9 0.024 8.1E-07 63.4 34.4 221 942-1178 8-239 (316)
272 3v64_C Agrin; beta propeller, 97.9 0.014 5E-07 66.2 32.6 226 852-1082 45-280 (349)
273 3s94_A LRP-6, low-density lipo 97.9 0.12 4.3E-06 63.2 42.8 359 769-1177 84-510 (619)
274 2xe4_A Oligopeptidase B; hydro 97.8 0.00075 2.6E-08 85.4 23.4 235 770-1038 175-461 (751)
275 3v65_B Low-density lipoprotein 97.8 0.013 4.4E-07 67.6 31.7 230 851-1084 87-325 (386)
276 3tc9_A Hypothetical hydrolase; 97.8 0.027 9.2E-07 65.9 34.3 248 925-1176 138-429 (430)
277 1ijq_A LDL receptor, low-densi 97.8 0.048 1.6E-06 60.8 34.6 229 783-1043 4-246 (316)
278 3sov_A LRP-6, low-density lipo 97.8 0.021 7.2E-07 63.9 30.9 206 828-1044 35-247 (318)
279 3p5b_L Low density lipoprotein 97.7 0.047 1.6E-06 63.2 34.8 219 825-1054 109-339 (400)
280 2p4o_A Hypothetical protein; p 97.7 0.034 1.2E-06 61.7 32.0 221 828-1068 32-279 (306)
281 3p5b_L Low density lipoprotein 97.7 0.053 1.8E-06 62.7 33.3 223 895-1120 85-320 (400)
282 2xbg_A YCF48-like protein; pho 97.6 0.093 3.2E-06 58.8 34.3 271 767-1075 34-320 (327)
283 4hw6_A Hypothetical protein, I 97.6 0.11 3.7E-06 60.8 35.3 248 925-1176 140-432 (433)
284 3qqz_A Putative uncharacterize 97.6 0.026 8.8E-07 60.6 27.2 206 959-1176 21-252 (255)
285 2vpj_A Kelch-like protein 12; 97.6 0.0033 1.1E-07 69.7 20.6 215 944-1178 31-279 (301)
286 3ei3_A DNA damage-binding prot 97.6 0.52 1.8E-05 61.9 46.8 359 769-1177 554-999 (1158)
287 3ei3_A DNA damage-binding prot 97.5 0.45 1.5E-05 62.5 43.1 302 851-1178 523-914 (1158)
288 3ott_A Two-component system se 97.5 0.43 1.5E-05 60.1 44.5 313 828-1178 63-402 (758)
289 3sov_A LRP-6, low-density lipo 97.5 0.11 3.8E-06 58.0 32.1 224 860-1084 12-245 (318)
290 4a0p_A LRP6, LRP-6, low-densit 97.5 0.41 1.4E-05 58.6 48.7 195 768-997 36-239 (628)
291 2xn4_A Kelch-like protein 2; s 97.5 0.0088 3E-07 66.2 22.2 224 935-1178 17-277 (302)
292 2xzh_A Clathrin heavy chain 1; 97.4 0.13 4.3E-06 56.4 29.7 222 944-1179 49-292 (365)
293 2vpj_A Kelch-like protein 12; 97.4 0.0059 2E-07 67.6 20.2 225 850-1077 14-278 (301)
294 3ii7_A Kelch-like protein 7; p 97.4 0.0086 2.9E-07 66.5 21.5 223 936-1178 14-273 (306)
295 3kya_A Putative phosphatase; s 97.4 0.037 1.3E-06 65.2 27.4 252 925-1178 140-476 (496)
296 1bpo_A Protein (clathrin); cla 97.4 0.2 6.8E-06 57.0 31.1 224 943-1179 47-291 (494)
297 3ii7_A Kelch-like protein 7; p 97.3 0.018 6.2E-07 63.8 23.0 222 894-1120 13-272 (306)
298 2xn4_A Kelch-like protein 2; s 97.3 0.0094 3.2E-07 66.0 20.4 225 851-1077 16-276 (302)
299 2xzh_A Clathrin heavy chain 1; 97.3 0.29 1E-05 53.6 34.3 253 859-1121 47-333 (365)
300 2xe4_A Oligopeptidase B; hydro 97.3 0.016 5.6E-07 73.1 24.6 183 888-1075 180-398 (751)
301 3qqz_A Putative uncharacterize 97.3 0.074 2.5E-06 57.0 25.9 194 878-1074 21-250 (255)
302 1bpo_A Protein (clathrin); cla 97.2 0.47 1.6E-05 54.0 34.8 252 860-1121 47-332 (494)
303 4a0p_A LRP6, LRP-6, low-densit 97.2 0.8 2.7E-05 56.1 47.8 153 1008-1178 390-550 (628)
304 3amr_A 3-phytase; beta-propell 97.2 0.076 2.6E-06 59.2 25.2 181 891-1076 38-262 (355)
305 3m0c_C LDL receptor, low-densi 97.2 0.26 8.8E-06 62.0 33.1 208 826-1044 422-641 (791)
306 3tc9_A Hypothetical hydrolase; 97.2 0.049 1.7E-06 63.7 25.1 223 849-1076 146-429 (430)
307 3m0c_C LDL receptor, low-densi 97.2 0.34 1.2E-05 60.8 34.0 227 853-1084 397-639 (791)
308 3amr_A 3-phytase; beta-propell 97.1 0.078 2.7E-06 59.1 24.6 188 975-1176 39-262 (355)
309 2p9w_A MAL S 1 allergenic prot 97.0 0.13 4.3E-06 57.0 24.8 196 921-1118 10-263 (334)
310 4asc_A Kelch repeat and BTB do 97.0 0.037 1.3E-06 61.6 21.3 224 937-1178 8-278 (315)
311 1zgk_A Kelch-like ECH-associat 97.0 0.02 7E-07 63.5 18.9 226 933-1178 24-288 (308)
312 4asc_A Kelch repeat and BTB do 97.0 0.075 2.6E-06 59.1 23.2 218 896-1120 8-277 (315)
313 1zgk_A Kelch-like ECH-associat 96.9 0.029 9.9E-07 62.3 18.7 224 849-1077 23-287 (308)
314 3ott_A Two-component system se 96.8 2 6.7E-05 54.0 46.3 350 770-1178 192-587 (758)
315 2woz_A Kelch repeat and BTB do 96.7 0.16 5.5E-06 56.4 23.1 218 945-1178 25-288 (318)
316 4hw6_A Hypothetical protein, I 96.7 0.32 1.1E-05 56.8 26.3 185 888-1075 145-372 (433)
317 1n7d_A LDL receptor, low-densi 96.6 0.0074 2.5E-07 75.4 12.1 213 829-1053 407-632 (699)
318 2woz_A Kelch repeat and BTB do 96.5 0.16 5.3E-06 56.5 21.2 212 904-1120 25-287 (318)
319 2p9w_A MAL S 1 allergenic prot 96.4 0.13 4.4E-06 56.9 18.9 162 1004-1176 10-214 (334)
320 1n7d_A LDL receptor, low-densi 96.3 0.012 4E-07 73.5 11.2 221 942-1178 384-615 (699)
321 3kya_A Putative phosphatase; s 96.1 0.84 2.9E-05 53.7 25.0 222 851-1077 152-475 (496)
322 2ism_A Putative oxidoreductase 96.0 1.6 5.4E-05 49.2 26.7 72 923-996 30-115 (352)
323 2be1_A Serine/threonine-protei 96.0 0.078 2.7E-06 59.3 15.2 141 934-1074 10-181 (339)
324 2uvk_A YJHT; unknown function, 95.9 0.11 3.8E-06 58.8 16.5 227 850-1079 19-344 (357)
325 2be1_A Serine/threonine-protei 95.9 0.12 4.1E-06 57.8 15.9 185 851-1040 10-236 (339)
326 1xi4_A Clathrin heavy chain; a 95.8 0.27 9.3E-06 63.9 20.1 224 943-1179 47-291 (1630)
327 1xi4_A Clathrin heavy chain; a 95.6 0.41 1.4E-05 62.3 20.7 212 860-1078 47-290 (1630)
328 2uvk_A YJHT; unknown function, 95.5 0.19 6.5E-06 56.8 16.4 227 892-1121 19-343 (357)
329 2ism_A Putative oxidoreductase 95.5 2.2 7.5E-05 48.0 24.8 217 829-1065 32-333 (352)
330 3qhy_B Beta-lactamase inhibito 95.3 0.23 7.8E-06 54.3 15.1 221 885-1119 25-245 (282)
331 3kci_A Probable E3 ubiquitin-p 95.1 6.1 0.00021 44.9 30.6 245 926-1176 55-344 (389)
332 3sre_A PON1, serum paraoxonase 94.8 3.9 0.00013 45.9 23.7 172 942-1117 81-295 (355)
333 3a9g_A Putative uncharacterize 94.7 7.2 0.00025 43.7 28.9 228 923-1165 28-330 (354)
334 3qhy_B Beta-lactamase inhibito 94.6 0.62 2.1E-05 50.7 16.3 221 925-1176 25-245 (282)
335 2zwa_A Leucine carboxyl methyl 94.5 0.57 1.9E-05 58.3 17.7 190 850-1039 397-639 (695)
336 1cru_A Protein (soluble quinop 94.4 9.9 0.00034 44.2 26.9 61 923-983 26-98 (454)
337 3s25_A Hypothetical 7-bladed b 94.3 7.5 0.00026 42.5 25.0 241 849-1117 23-290 (302)
338 4d9s_A UVB-resistance protein 94.1 10 0.00035 43.3 37.3 286 882-1176 14-356 (406)
339 2zwa_A Leucine carboxyl methyl 93.8 1.3 4.5E-05 54.9 18.8 178 944-1121 412-636 (695)
340 3pbp_A Nucleoporin NUP82; beta 93.7 3 0.0001 47.4 19.6 137 933-1072 31-207 (452)
341 3sre_A PON1, serum paraoxonase 93.7 7.6 0.00026 43.5 23.0 185 966-1167 51-287 (355)
342 3pbp_A Nucleoporin NUP82; beta 93.0 3.2 0.00011 47.2 18.2 149 1015-1171 31-206 (452)
343 3s25_A Hypothetical 7-bladed b 92.4 15 0.00051 40.1 25.3 209 889-1119 21-254 (302)
344 2g8s_A Glucose/sorbosone dehyd 91.2 22 0.00074 39.7 26.9 71 924-995 18-107 (353)
345 1tl2_A L10, protein (tachylect 90.9 4 0.00014 42.1 14.5 169 936-1113 6-203 (236)
346 3sbq_A Nitrous-oxide reductase 89.1 18 0.00061 42.6 19.6 263 896-1165 73-453 (638)
347 3uc1_A DNA gyrase subunit A; D 88.8 32 0.0011 37.9 24.9 266 894-1168 4-321 (327)
348 3a9g_A Putative uncharacterize 88.6 34 0.0012 38.1 28.7 221 828-1065 29-330 (354)
349 2g8s_A Glucose/sorbosone dehyd 88.4 35 0.0012 37.9 26.4 57 1008-1064 272-340 (353)
350 3mvd_K Regulator of chromosome 88.3 40 0.0014 38.5 34.5 242 925-1176 76-373 (423)
351 1tl2_A L10, protein (tachylect 87.5 15 0.0005 38.0 15.8 175 976-1170 4-203 (236)
352 3kci_A Probable E3 ubiquitin-p 84.0 61 0.0021 36.5 33.7 232 885-1120 54-345 (389)
353 4d9s_A UVB-resistance protein 83.9 63 0.0022 36.6 38.4 264 851-1119 25-356 (406)
354 1cru_A Protein (soluble quinop 80.2 66 0.0023 37.1 19.7 103 964-1066 26-163 (454)
355 3b7f_A Glycosyl hydrolase, BNR 79.3 86 0.0029 35.1 27.9 172 893-1068 22-254 (394)
356 3mvd_K Regulator of chromosome 78.9 93 0.0032 35.3 40.7 221 851-1077 84-374 (423)
357 4hvt_A Ritya.17583.B, post-pro 72.9 1.8E+02 0.0062 35.6 23.7 172 860-1034 215-429 (711)
358 3b7f_A Glycosyl hydrolase, BNR 71.5 1.3E+02 0.0045 33.5 23.8 135 934-1071 22-202 (394)
359 3das_A Putative oxidoreductase 70.8 1.3E+02 0.0045 33.2 29.2 230 822-1065 26-326 (347)
360 3q6k_A 43.2 kDa salivary prote 68.8 1.5E+02 0.0052 33.1 23.3 169 986-1165 123-342 (381)
361 3of7_A Regulator of chromosome 66.3 1.9E+02 0.0065 33.3 32.0 232 884-1120 67-405 (473)
362 1suu_A DNA gyrase subunit A; t 66.0 1.5E+02 0.0052 32.1 27.2 230 933-1171 7-277 (312)
363 1v54_E Cytochrome C oxidase po 65.2 12 0.0004 33.2 5.9 50 624-677 46-96 (109)
364 1suu_A DNA gyrase subunit A; t 64.8 1.6E+02 0.0055 31.9 27.1 184 891-1077 6-231 (312)
365 3das_A Putative oxidoreductase 64.4 1.7E+02 0.006 32.2 29.8 237 917-1165 25-326 (347)
366 3of7_A Regulator of chromosome 63.3 2.1E+02 0.0073 32.8 26.3 149 965-1119 148-340 (473)
367 3sbq_A Nitrous-oxide reductase 59.1 2.8E+02 0.0095 32.8 25.5 231 891-1123 140-481 (638)
368 1wp5_A Topoisomerase IV; broke 57.6 2.2E+02 0.0074 31.0 25.0 235 933-1175 4-275 (323)
369 1wp5_A Topoisomerase IV; broke 54.1 2.4E+02 0.0084 30.6 25.1 229 891-1120 3-277 (323)
370 1zi0_A DNA gyrase subunit A; b 53.6 2.4E+02 0.0082 30.4 27.3 232 934-1175 3-275 (307)
371 1a12_A RCC1, regulator of chro 53.5 2.8E+02 0.0095 31.1 35.3 239 924-1176 59-364 (413)
372 2wg3_C Hedgehog-interacting pr 49.5 1.5E+02 0.0053 34.1 14.1 30 1047-1076 14-44 (463)
373 2y69_E Cytochrome C oxidase su 48.6 29 0.001 32.4 5.9 50 624-677 89-139 (152)
374 3v42_A Folliculin; tumor suppr 47.8 14 0.00047 38.1 4.1 96 205-306 7-104 (226)
375 4hvt_A Ritya.17583.B, post-pro 46.5 4.8E+02 0.016 31.8 24.9 227 888-1119 136-429 (711)
376 4gq2_M Nucleoporin NUP120; bet 44.3 1E+02 0.0035 39.4 12.4 38 965-1002 236-273 (950)
377 4gq2_M Nucleoporin NUP120; bet 44.3 81 0.0028 40.2 11.5 32 1147-1178 236-267 (950)
378 1zi0_A DNA gyrase subunit A; b 42.4 3.5E+02 0.012 29.0 29.3 228 891-1120 1-277 (307)
379 2ab9_A Pro-SFTI-1; protein, be 42.0 10 0.00035 24.2 1.2 13 53-65 18-30 (31)
380 3l6v_A GYRA, DNA gyrase subuni 37.6 4.6E+02 0.016 29.0 28.4 234 933-1175 6-314 (370)
381 3no0_A DNA gyrase subunit A; D 37.3 3.9E+02 0.013 28.1 24.4 186 933-1122 34-248 (276)
382 4fhn_B Nucleoporin NUP120; pro 35.3 8.5E+02 0.029 31.4 19.6 36 1048-1086 239-274 (1139)
383 3uc1_A DNA gyrase subunit A; D 35.0 4.7E+02 0.016 28.3 24.9 234 934-1175 3-277 (327)
384 2wg3_C Hedgehog-interacting pr 32.7 6.1E+02 0.021 29.0 16.6 103 965-1067 14-159 (463)
385 1a12_A RCC1, regulator of chro 29.0 6.3E+02 0.022 28.0 35.8 229 884-1119 59-364 (413)
386 4fhn_B Nucleoporin NUP120; pro 27.7 1.1E+02 0.0037 40.0 8.9 37 966-1002 239-275 (1139)
387 3f7f_A Nucleoporin NUP120; nuc 26.4 77 0.0026 38.6 6.4 37 885-921 223-259 (729)
388 3f7f_A Nucleoporin NUP120; nuc 21.5 1.1E+02 0.0038 37.2 6.5 38 1007-1044 222-259 (729)
389 3no0_A DNA gyrase subunit A; D 20.4 7.5E+02 0.026 25.8 24.1 200 964-1175 23-244 (276)
No 1
>3tw8_A DENN domain-containing protein 1B; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.2e-67 Score=602.27 Aligned_cols=373 Identities=23% Similarity=0.400 Sum_probs=288.8
Q ss_pred CcceEEEEEEccCCCccccCCCCCCCCCccccccccccccccCCCCCCCCCCCCCCcccCCCceEEeecCCCCCCCCCCC
Q 001039 2 ARVFEYFVVCGIGPEIRTLDGSKGYHGPEYYYLSSVLDQFPPLNHSLYTPPPPQLSTCVLPAGVQFYSSGFDSDDPSTFP 81 (1179)
Q Consensus 2 ~rl~dyfvvvG~~~~~~~~~~~~~~~~~~~~~~p~vl~~yP~~~~~~~~~~~~~~~~fc~P~g~~~~~~~~~~~~~~~~p 81 (1179)
.|+||+|++|+.+.. ..|.|+|+++||+ ++++. +.++.|+.||||+|+++... .+.+
T Consensus 11 ~~~f~~~~~v~~p~~--------------~~~~p~i~~~fP~-~~~d~-~~l~~ip~FCfP~~~~~~~~-------~~~~ 67 (391)
T 3tw8_A 11 DRTFDLVLKVKCHAS--------------ENEDPVVLWKFPE-DFGDQ-EILQSVPKFCFPFDVERVSQ-------NQVG 67 (391)
T ss_dssp SSSCSEEEEEEC-------------------CCCEEEEEEST-TCCCH-HHHHHHHHHHSCSCHHHHGG-------GCCS
T ss_pred hhhEEEEEEEeCCCC--------------CCCCCeeeEeCCC-Ccccc-hhhhccccccCCCccccCcc-------CCCC
Confidence 589999999995321 1278999999998 55543 35678999999999987442 1357
Q ss_pred ceeEEEEEcCCCCeEEEEEEEeccCCCHHHHHhccCCCCccCCeEEEEEcCCChHHHHHHHHHHHHHHhhccCCCCccHH
Q 001039 82 RTYPIVLTEGDGSKIYVSCISFRDPVSEDIAEAYRIPANSFADKCICLVSRSPSFRILRNALEEIYSLCFLSDGSSKPLW 161 (1179)
Q Consensus 82 ~~f~fvlT~~~g~~~Yg~cl~f~e~~~~~~~~~~~~~~~~~~~~~icllS~~p~~~~f~~~L~~i~~~~~~~~~~~~~~~ 161 (1179)
++|+|||||+||+|.||+|+.++ .++||||||||+|||++|+++|..||+++.. +...++|
T Consensus 68 ~~fsFVLTd~dG~r~yg~Cr~~~-----------------~~~k~icilS~lp~f~~F~k~L~~l~~~~~~--~~~~~le 128 (391)
T 3tw8_A 68 QHFTFVLTDIESKQRFGFCRLTS-----------------GGTICLCILSYLPWFEVYYKLLNTLADYLAK--ELENDLN 128 (391)
T ss_dssp EEEEEEEECTTSCEEEEEEEECT-----------------TSSEEEEEEESSCCHHHHHHHHHHHHHHHHT--TCHHHHH
T ss_pred ceEEEEEecCCCCEEEEEEEccC-----------------CCceEEEEEeCChHHHHHHHHHHHHHHHHhc--CCchHHH
Confidence 89999999999999999999653 3679999999999999999999999998664 3356788
Q ss_pred HHHHhhcccCCCCCCCCceEEeeeccceeEEeCCCCCCCCCCC--cchHHHhccCChhhHHHHHHHHhccccEEEEeCCc
Q 001039 162 DVISHLVSNVPLPTPGKNRVLFAIENCLLSVEAPPKEGLPHAD--ISFQPLVQLLDVDNLITLFTAVLLERRILLRSNKY 239 (1179)
Q Consensus 162 ~~i~~~l~~~p~P~pg~~~~~~~~~~~~~~~~~p~~~~lp~~~--~~~~~l~~~l~~~~~~~l~~~~L~E~~il~~s~~~ 239 (1179)
+++. .++++|+|.||++ +.+.... .++.|....+|..+ .++..||++|+++|++.+|+++|+|+||||+|+++
T Consensus 129 ~~~~-~l~~~P~P~pG~~-v~l~~~~---~~~~P~~~~Lp~~~~~~~~~~Lf~~L~~~~il~l~~~~LlE~rIl~~S~~~ 203 (391)
T 3tw8_A 129 ETLR-SLYNHPVPKANTP-VNLSVHS---YFIAPDVTGLPTIPESRNLTEYFVAVDVNNMLQLYASMLHERRIVIISSKL 203 (391)
T ss_dssp HHHH-HHHHSCCCCSCC--------------------CCCCBTTSHHHHHHHHHSCHHHHHHHHHHHTTTCEEEEEESCH
T ss_pred HHHH-HHhhCCCCCCCCe-EEEeccc---eeeCCCCCCCCCCCCCCCHHHHHHhCCHHHHHHHHHHHHhcCCEEEEeCCH
Confidence 8876 5789999999987 4444322 44578788888765 46899999999999999999999999999999999
Q ss_pred chHHHHHHHHHHcccccCCCceeecccchhhhhhccCCcceEEeccCCCCc--cccCCCcEEEEEcCCCeeeCC-CCCCC
Q 001039 240 SLLTLVSEAICHLIYPFRWQHVYIPLLFFSGVDYIDAPTPYMMGLHSGVDT--SNLAMDGVVVVDLEYNRICTT-EEIPP 316 (1179)
Q Consensus 240 ~~ls~~~~al~~ll~P~~w~~~~IP~lP~~l~~~l~aP~P~iiGi~~~~~~--~~~~~~~~~~vdlD~~~i~~~-~~~~~ 316 (1179)
++||.|++|+.+|||||+|+|+|||+||.+|+|+|+||+||||||+++... ...+.+|+++||||+|+|..+ ++++.
T Consensus 204 ~~Ls~~~~al~~Ll~Pf~w~~~~IPvLP~~l~d~l~aP~PfiiGv~~~~~~~~~~~~~~dvvvVDLD~~~i~~~~~d~~~ 283 (391)
T 3tw8_A 204 STLTACIHGSAALLYPMYWQHIYIPVLPPHLLDYCCAPMPYLIGIHSSLIERVKNKSLEDVVMLNVDTNTLESPFSDLNN 283 (391)
T ss_dssp HHHHHHHHHHHHTTTTSCCCSEEESSCCGGGGGGGGCSSCEEEEEETTTHHHHHTSCCCSCEEEETTTTEEECSCCTGGG
T ss_pred HHHHHHHHHHHHHhcCcccCcceEeecCHHHHhHhcCCCCEEEEecchhHHHhhccCCCCEEEEEcCCCeEeCCCccccc
Confidence 999999999999999999999999999999999999999999999998632 233578999999999999988 67899
Q ss_pred CCchhhhhhHHHHHHhcCCCcccccccCCCCCCcccccccCCCCchhhhHHHHHHHHHHHHHHHhhHHhccccc--Cccc
Q 001039 317 IPEPELSSLRGDILKLLYPNVVGIDRMNAGGSSEHYSKVCSKPWGEEHDLQLRFIFLKFLASILGGYRNFIENT--GTQV 394 (1179)
Q Consensus 317 lP~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~Fl~~~~~ll~~y~~~l~~~--~~~~ 394 (1179)
||++..+.|+++|++.. ...+..|++||++||++++++||+|++.. +...
T Consensus 284 LP~~~~~~L~~~L~~~~----------------------------~~~~~~v~~aFlrf~~~llg~Yr~~l~~~~~~~~~ 335 (391)
T 3tw8_A 284 LPSDVVSALKNKLKKQS----------------------------TATGDGVARAFLRAQAALFGSYRDALRYKPGEPIT 335 (391)
T ss_dssp SCHHHHHHHHHHHTSGG----------------------------GGSBTHHHHHHHHHHHHHHGGGCC---------CC
T ss_pred CCHHHHHHHHHHHhhcc----------------------------CchhhHHHHHHHHHHHHHHhHHHHhhccCCCCceE
Confidence 99998888888875321 01234699999999999999999999754 4678
Q ss_pred cChHHHhcccccCCCCCCchHHHHHHHHhHHHHHHHcccCCCCCchhHHHHHHHHhccC
Q 001039 395 FNAQAFLKKRSRSTNQPPDPMITQFLDSQGFLDYLERGLGSDENNSNLLDKLQDAIGRG 453 (1179)
Q Consensus 395 F~~~~Fl~~~~~~~~~~~~~F~~~f~~tq~F~~Fie~~~~~~~~~~~~~~~~~~~~~~~ 453 (1179)
||+++|+++|+++ .++|+++|++||||..|||+|+...+.+....|.+++|++.+
T Consensus 336 F~~~~Fl~~r~~~----~~~Fl~~~~~TQmF~~FI~eRl~~ln~~~~~~d~fe~ei~~~ 390 (391)
T 3tw8_A 336 FCEESFVKHRSSV----MKQFLETAINLQLFKQFIDGRLAKLNAGRGFSDVFEEEITSG 390 (391)
T ss_dssp CCHHHHSCCSSHH----HHHHHHHHTTCHHHHHHHHHHHHHTC----------------
T ss_pred ecHHHHhhccChh----hhHHHHHHHHhhHHHHHHHHHHHhhcCCCCCCcHHHHHhhcC
Confidence 9999999998876 679999999999999999999988877777888888888754
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=4e-45 Score=457.23 Aligned_cols=386 Identities=17% Similarity=0.260 Sum_probs=320.1
Q ss_pred ccc-cCCCCCC----CC-------CCC-CCCcccccCCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCC
Q 001039 744 NGM-PSPLSKD----AT-------NDD-QQPAEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQD 808 (1179)
Q Consensus 744 ~~~-fSP~g~~----~~-------~~~-~~~~~~~gh~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~ 808 (1179)
.++ |||+|+. .. ..+ .....+.+|...|.+++|||||+++|+|+.| |++||+.+++.
T Consensus 22 ~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~-------- 93 (611)
T 1nr0_A 22 VVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH-------- 93 (611)
T ss_dssp CCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC--------
T ss_pred eEEeeCCCCCEEEeCCCCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcc--------
Confidence 366 8999971 00 122 3344567899999999999999999999998 99999875441
Q ss_pred CCCCCcccccceEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCC----CcEEEEcCCCCCceeEEEeccccc
Q 001039 809 STAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTD----CLVKIWDPSLRGSELRATLKGHTR 884 (1179)
Q Consensus 809 ~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~D----g~I~lWd~~~~~~~~~~~l~~h~~ 884 (1179)
.....+.+|.++|.+++|+ ||+++|++++.+ ++|++||.. .....+.+|..
T Consensus 94 ---------~~~~~~~~~~~~v~~v~fs------------~dg~~l~~~~~~~~~~~~v~~wd~~----~~~~~l~gh~~ 148 (611)
T 1nr0_A 94 ---------ILKTTIPVFSGPVKDISWD------------SESKRIAAVGEGRERFGHVFLFDTG----TSNGNLTGQAR 148 (611)
T ss_dssp ---------CEEEEEECSSSCEEEEEEC------------TTSCEEEEEECCSSCSEEEEETTTC----CBCBCCCCCSS
T ss_pred ---------eeeEeecccCCceEEEEEC------------CCCCEEEEEECCCCceeEEEEeeCC----CCcceecCCCC
Confidence 1456789999999999998 899999999875 478999843 23456889999
Q ss_pred cEEE--EecCCC-EEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEe
Q 001039 885 TVRA--INSDRG-KVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATV 960 (1179)
Q Consensus 885 ~v~~--~s~d~~-~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~ 960 (1179)
.|.+ |+|++. .|++|+.|++|++||..+++....+.+|...|.+++|+ ++.++++|+.||+|++||..+++....+
T Consensus 149 ~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~ 228 (611)
T 1nr0_A 149 AMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVF 228 (611)
T ss_dssp CEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEC
T ss_pred CceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeee
Confidence 9986 578876 69999999999999999999999999999999999999 6889999999999999999999998888
Q ss_pred c-------cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE--------------------------------
Q 001039 961 G-------RCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHK-------------------------------- 1001 (1179)
Q Consensus 961 ~-------~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~-------------------------------- 1001 (1179)
. +|.+.|.+++|+|++++|++++.|++|++||+++++.+..
T Consensus 229 ~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~ 308 (611)
T 1nr0_A 229 EDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINF 308 (611)
T ss_dssp BCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEE
T ss_pred ccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEE
Confidence 4 6899999999999999999999999999999998765433
Q ss_pred -----------eecCCCCeEEEEEcC--CEEEEEeCCCcEEEEEccCCeeeEEe-e------------------------
Q 001039 1002 -----------FLGHTKWIRSIRMDR--DTVITGSDDWTARMWSISRGTCDAVL-A------------------------ 1043 (1179)
Q Consensus 1002 -----------~~~~~~~I~sl~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~-~------------------------ 1043 (1179)
+.+|...|+++++++ +++++++.||+|++||+.+++....+ .
T Consensus 309 ~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~ 388 (611)
T 1nr0_A 309 VNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDD 388 (611)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTT
T ss_pred EeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCC
Confidence 347888999999964 59999999999999998876543221 0
Q ss_pred ---------------------------------------------------------cCCcCEEEEEEecCCCEEEEEeC
Q 001039 1044 ---------------------------------------------------------CHAGPVQCVEYSSSDRGIITGSS 1066 (1179)
Q Consensus 1044 ---------------------------------------------------------~h~~~V~~l~~spdg~~l~sgs~ 1066 (1179)
.|...+.+++|+|||++|++|+.
T Consensus 389 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~ 468 (611)
T 1nr0_A 389 HLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQ 468 (611)
T ss_dssp EEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEET
T ss_pred ceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCC
Confidence 12345788999999999999999
Q ss_pred CCcEEEEEcCCCCcceEEEeecccCceEEEE--ecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeee--c
Q 001039 1067 DGLLRFWENDDAGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRT--P 1142 (1179)
Q Consensus 1067 Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~si--s~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~--~ 1142 (1179)
||+|++||+.+.. ...... .+|...|.++ +|+|++|++++.|++|++||+.+. + ++... .
T Consensus 469 D~~v~lwd~~~~~-~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~--------~------~~~~~~~~ 532 (611)
T 1nr0_A 469 DSKVHVYKLSGAS-VSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANN--------F------ELAHTNSW 532 (611)
T ss_dssp TSEEEEEEEETTE-EEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGT--------T------EESCCCCC
T ss_pred CCeEEEEEccCCc-eeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCC--------C------ceeeeeee
Confidence 9999999998732 233344 5788888665 899999999999999999998731 1 22222 3
Q ss_pred CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001039 1143 QKTVAVVRCIASDLERKRICSGGRNGLLRLWEATIN 1178 (1179)
Q Consensus 1143 ~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~tg 1178 (1179)
.+|...|++++|+|||++|||||.||+|++|+++++
T Consensus 533 ~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~ 568 (611)
T 1nr0_A 533 TFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKP 568 (611)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCT
T ss_pred eecccceeEEEECCCCCEEEEEECCCcEEEEECCCc
Confidence 459999999999999999999999999999999864
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=6.9e-44 Score=446.05 Aligned_cols=388 Identities=17% Similarity=0.229 Sum_probs=313.8
Q ss_pred cccccCcc-cc-cCCCCC-----CCCC-------CCCC---CcccccCCcceEEEEEccCCCceeeccCc------eEee
Q 001039 737 KGQSSLSN-GM-PSPLSK-----DATN-------DDQQ---PAEASGIGRSWVQSMFSREASSRSHSFSR------VRKW 793 (1179)
Q Consensus 737 ~~~~~~~~-~~-fSP~g~-----~~~~-------~~~~---~~~~~gh~~~i~~~~fSpdg~~las~~~d------I~vW 793 (1179)
+...-..+ ++ |||+|+ ..++ .+++ .....+|...|.+++|||||+.+|+++.+ |++|
T Consensus 55 ~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~w 134 (611)
T 1nr0_A 55 YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLF 134 (611)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEET
T ss_pred ecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEe
Confidence 33444455 67 999998 1111 1112 22456888999999999999999988753 6777
Q ss_pred eCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceeccccccCCCC-EEEEEeCCCcEEEEcCCCCC
Q 001039 794 TSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAG-FFISGSTDCLVKIWDPSLRG 872 (1179)
Q Consensus 794 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~-~Lasgs~Dg~I~lWd~~~~~ 872 (1179)
| ++. ....+.+|.+.|++++|+ |++. .|++|+.|++|++||.. .
T Consensus 135 d--~~~-------------------~~~~l~gh~~~v~~v~f~------------p~~~~~l~s~s~D~~v~lwd~~--~ 179 (611)
T 1nr0_A 135 D--TGT-------------------SNGNLTGQARAMNSVDFK------------PSRPFRIISGSDDNTVAIFEGP--P 179 (611)
T ss_dssp T--TCC-------------------BCBCCCCCSSCEEEEEEC------------SSSSCEEEEEETTSCEEEEETT--T
T ss_pred e--CCC-------------------CcceecCCCCCceEEEEC------------CCCCeEEEEEeCCCeEEEEECC--C
Confidence 6 333 345678999999999998 7776 69999999999999965 5
Q ss_pred ceeEEEeccccccEEE--EecCCCEEEEEeCCCcEEEEECCCCeEEEEee-------cCCCcEEEEEEe-CCCEEEEEEc
Q 001039 873 SELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLLEELK-------GHDAQVSCVRML-SGERVLTASH 942 (1179)
Q Consensus 873 ~~~~~~l~~h~~~v~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~-------~h~~~V~~l~~s-~~~~l~sgs~ 942 (1179)
.+....+.+|...|.+ ++|++++|++|+.||+|++||..+++.+..+. +|.+.|.+++|+ ++.++++|+.
T Consensus 180 ~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~ 259 (611)
T 1nr0_A 180 FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA 259 (611)
T ss_dssp BEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEET
T ss_pred CeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeC
Confidence 6677889999999986 58999999999999999999999999988884 799999999999 6889999999
Q ss_pred CCeEEEEeCCCCeEEEE-------------------------------------------eccCCCcEEEEEEcCCCCEE
Q 001039 943 DGTVKMWDVRTDTCVAT-------------------------------------------VGRCSSAVLCMEYDDSTGIL 979 (1179)
Q Consensus 943 dg~I~iwd~~~~~~~~~-------------------------------------------~~~~~~~v~~l~~sp~~~~l 979 (1179)
|++|++||+.+++++.+ +.+|...|.+++|+|+|+++
T Consensus 260 D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l 339 (611)
T 1nr0_A 260 DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTL 339 (611)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred CCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEE
Confidence 99999999998765543 34688899999999999999
Q ss_pred EEEeCCCeEEEEeCCCCceeEEe-ec------------------------------------------------------
Q 001039 980 AAGGRDAVANIWDIRAGRQMHKF-LG------------------------------------------------------ 1004 (1179)
Q Consensus 980 ~sgs~dg~I~iwD~~~~~~~~~~-~~------------------------------------------------------ 1004 (1179)
++++.||.|++||+.+++....+ .+
T Consensus 340 ~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (611)
T 1nr0_A 340 FSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAV 419 (611)
T ss_dssp EEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEE
T ss_pred EEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEE
Confidence 99999999999999876543221 01
Q ss_pred ---------------------------CCCCeEEEEEc--CCEEEEEeCCCcEEEEEccCCee--eEEeecCCcCEEEEE
Q 001039 1005 ---------------------------HTKWIRSIRMD--RDTVITGSDDWTARMWSISRGTC--DAVLACHAGPVQCVE 1053 (1179)
Q Consensus 1005 ---------------------------~~~~I~sl~~~--~~~l~sgs~dg~I~iwd~~~~~~--~~~~~~h~~~V~~l~ 1053 (1179)
|...+.+++++ ++++++|+.|++|++||+.++.. ... .+|...|++++
T Consensus 420 s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~ 498 (611)
T 1nr0_A 420 SADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVA 498 (611)
T ss_dssp CTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEE
T ss_pred eCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEE
Confidence 12345677775 45999999999999999987754 233 67999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEEcCCCCcceEEEe--ecccCceEEEE--ecCCCEEEEEECCCcEEEEeCCCCCcCcccCC
Q 001039 1054 YSSSDRGIITGSSDGLLRFWENDDAGGIKCVKN--VTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGT 1129 (1179)
Q Consensus 1054 ~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~--~~~h~~~i~si--s~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~ 1129 (1179)
|+|||++|++++.|++|++||+.+.. +.... ..+|...|.++ +|+|++||+|+.|++|++||+...
T Consensus 499 fspdg~~las~s~d~~v~~w~~~~~~--~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~-------- 568 (611)
T 1nr0_A 499 FSNNGAFLVATDQSRKVIPYSVANNF--ELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKP-------- 568 (611)
T ss_dssp ECTTSSEEEEEETTSCEEEEEGGGTT--EESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCT--------
T ss_pred ECCCCCEEEEEcCCCCEEEEEcCCCC--ceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCc--------
Confidence 99999999999999999999998632 22222 33488888665 799999999999999999999732
Q ss_pred CCccccceeeeecCCC-cccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001039 1130 GSKMSGWQLYRTPQKT-VAVVRCIASDLERKRICSGGRNGLLRLWEAT 1176 (1179)
Q Consensus 1130 g~~~~~~~~~~~~~~h-~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~ 1176 (1179)
.. .......+| ...|++++|+||++ |++|+.||+|++|++.
T Consensus 569 -~~----~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 569 -SD----HPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp -TS----CCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred -cc----ccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 10 112456688 89999999999998 9999999999999984
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.3e-42 Score=427.22 Aligned_cols=354 Identities=24% Similarity=0.462 Sum_probs=318.2
Q ss_pred cccccCCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeeccc
Q 001039 762 AEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKR 839 (1179)
Q Consensus 762 ~~~~gh~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~ 839 (1179)
....+|...+.+++|+|||+++++++.+ |++||.. ++ .+..+.+|...|++++|+
T Consensus 215 ~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~-~~-------------------~~~~~~~~~~~v~~v~~~--- 271 (577)
T 2ymu_A 215 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQ-------------------LLQTLTGHSSSVNGVAFR--- 271 (577)
T ss_dssp EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT-SC-------------------EEEEECCCSSCEEEEEEC---
T ss_pred EEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC-CC-------------------EEEEEecCCCCEEEEEEc---
Confidence 3457888999999999999999999988 9999964 22 577899999999999998
Q ss_pred ceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEE--EecCCCEEEEEeCCCcEEEEECCCCeEEE
Q 001039 840 EVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLLE 917 (1179)
Q Consensus 840 ~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~ 917 (1179)
|+++.+++++.|++|++||.. ......+.+|...|.+ ++|+++.+++++.||+|++||.. ++.+.
T Consensus 272 ---------~d~~~l~~~~~d~~i~~w~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~ 338 (577)
T 2ymu_A 272 ---------PDGQTIASASDDKTVKLWNRN---GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQ 338 (577)
T ss_dssp ---------TTSSEEEEEETTSCEEEEETT---SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEE
T ss_pred ---------CCCCEEEEEeCCCEEEEEeCC---CcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeE
Confidence 899999999999999999954 4556788999999985 58999999999999999999976 45667
Q ss_pred EeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 001039 918 ELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAG 996 (1179)
Q Consensus 918 ~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~ 996 (1179)
.+.+|...+.+++|+ ++..+++|+.||.|++||. +++.+..+..|...|.+++|+|+++++++++.|+.|++||. ++
T Consensus 339 ~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~ 416 (577)
T 2ymu_A 339 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NG 416 (577)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TC
T ss_pred EEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CC
Confidence 888999999999999 6889999999999999995 67788888899999999999999999999999999999995 67
Q ss_pred ceeEEeecCCCCeEEEEEcC--CEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEE
Q 001039 997 RQMHKFLGHTKWIRSIRMDR--DTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWE 1074 (1179)
Q Consensus 997 ~~~~~~~~~~~~I~sl~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd 1074 (1179)
+.+..+.+|...|++++|++ .++++++.|++|++||. +++.+..+.+|...|++++|+|++++|++++.|+.|++||
T Consensus 417 ~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~ 495 (577)
T 2ymu_A 417 QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 495 (577)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred CEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEc
Confidence 88889999999999999965 49999999999999995 5778888999999999999999999999999999999999
Q ss_pred cCCCCcceEEEeecccCceEEEE--ecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEE
Q 001039 1075 NDDAGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCI 1152 (1179)
Q Consensus 1075 ~~~~~~~~~~~~~~~h~~~i~si--s~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v 1152 (1179)
... +++..+.+|...|.++ +|+|++|++|+.||.|++||.. | +++..+.+|.+.|+++
T Consensus 496 ~~~----~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~----------~------~~~~~~~~h~~~v~~~ 555 (577)
T 2ymu_A 496 RNG----QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN----------G------QLLQTLTGHSSSVWGV 555 (577)
T ss_dssp TTS----CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT----------S------CEEEEEECCSSCEEEE
T ss_pred CCC----CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC----------C------CEEEEEcCCCCCEEEE
Confidence 643 6777888999998765 7999999999999999999964 2 4566778999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEE
Q 001039 1153 ASDLERKRICSGGRNGLLRLWE 1174 (1179)
Q Consensus 1153 ~fspdg~~Lasgs~Dg~I~vWd 1174 (1179)
+|+|||++|+|+|.||+|++||
T Consensus 556 ~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 556 AFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EECTTSSCEEEEETTSCEEEEC
T ss_pred EEcCCCCEEEEEeCCCEEEEeC
Confidence 9999999999999999999997
No 5
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=6.6e-41 Score=415.58 Aligned_cols=358 Identities=24% Similarity=0.455 Sum_probs=314.4
Q ss_pred CcccccCCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecc
Q 001039 761 PAEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTK 838 (1179)
Q Consensus 761 ~~~~~gh~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~ 838 (1179)
..++.||...|.+++|||||+++|+|+.| |++||. +++ .++.+.+|.+.|++++|+
T Consensus 9 ~~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~-------------------~~~~l~gh~~~V~~l~fs-- 66 (577)
T 2ymu_A 9 RNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQ-------------------LLQTLTGHSSSVWGVAFS-- 66 (577)
T ss_dssp EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSC-------------------EEEEEECCSSCEEEEEEC--
T ss_pred eeEECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCC-------------------EEEEEeCCCCCEEEEEEC--
Confidence 34578999999999999999999999998 999995 344 688999999999999998
Q ss_pred cceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEE--EecCCCEEEEEeCCCcEEEEECCCCe--
Q 001039 839 REVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQ-- 914 (1179)
Q Consensus 839 ~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~--~s~d~~~l~sgs~dg~I~iwd~~t~~-- 914 (1179)
||+++||+|+.|++|++||.. ......+.+|...|.+ ++|+++++++++.|+.+++|+.....
T Consensus 67 ----------pdg~~las~~~d~~i~vWd~~---~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~ 133 (577)
T 2ymu_A 67 ----------PDGQTIASASDDKTVKLWNRN---GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ 133 (577)
T ss_dssp ----------TTSSEEEEEETTSCEEEEETT---SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEE
T ss_pred ----------CCCCEEEEEeCCCEEEEEECC---CCEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceee
Confidence 899999999999999999954 4566889999999985 58999999999999999999865332
Q ss_pred --------------------------------------EEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCe
Q 001039 915 --------------------------------------LLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDT 955 (1179)
Q Consensus 915 --------------------------------------~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~ 955 (1179)
.......|...|.++.++ ++..+++++.||.|++||. +++
T Consensus 134 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~-~~~ 212 (577)
T 2ymu_A 134 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQ 212 (577)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSC
T ss_pred eccCCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeC-CCc
Confidence 122334566778888888 6788999999999999995 677
Q ss_pred EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcC--CEEEEEeCCCcEEEEEc
Q 001039 956 CVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR--DTVITGSDDWTARMWSI 1033 (1179)
Q Consensus 956 ~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~--~~l~sgs~dg~I~iwd~ 1033 (1179)
.+..+..|...|.+++|+|+++++++++.|+.|++||. +++.+..+.+|...|.++++++ ..+++++.|+.|++||.
T Consensus 213 ~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~ 291 (577)
T 2ymu_A 213 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR 291 (577)
T ss_dssp EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC
Confidence 88888899999999999999999999999999999995 5778888999999999999964 58999999999999995
Q ss_pred cCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEE--ecCCCEEEEEECCC
Q 001039 1034 SRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADN 1111 (1179)
Q Consensus 1034 ~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~si--s~dg~~lasgs~Dg 1111 (1179)
+++....+.+|...|++++|+|+++.+++++.||.|++||... ..+..+.+|...+.++ +|+++++++|+.||
T Consensus 292 -~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~----~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg 366 (577)
T 2ymu_A 292 -NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG----QHLQTLTGHSSSVWGVAFSPDGQTIASASDDK 366 (577)
T ss_dssp -TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS----CEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred -CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC----CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCC
Confidence 5677888899999999999999999999999999999999876 4556677888888665 79999999999999
Q ss_pred cEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001039 1112 SMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEAT 1176 (1179)
Q Consensus 1112 ~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~ 1176 (1179)
.|++||.. + +....+.+|...|++++|+|||++|++++.||.|++||.+
T Consensus 367 ~v~~~~~~----------~------~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~ 415 (577)
T 2ymu_A 367 TVKLWNRN----------G------QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 415 (577)
T ss_dssp EEEEEETT----------C------CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred EEEEEcCC----------C------CEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence 99999964 2 4556677899999999999999999999999999999964
No 6
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.2e-39 Score=404.32 Aligned_cols=373 Identities=16% Similarity=0.238 Sum_probs=306.5
Q ss_pred CCcccccCCcc-eEEEEEcc--CCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEE
Q 001039 760 QPAEASGIGRS-WVQSMFSR--EASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALH 834 (1179)
Q Consensus 760 ~~~~~~gh~~~-i~~~~fSp--dg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~ 834 (1179)
....+.+|... |.+++|+| ||+++|+++.| |++||+.++.... ......+..+.+|.+.|.+++
T Consensus 55 ~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~-----------~~~~~~~~~~~~~~~~v~~~~ 123 (615)
T 1pgu_A 55 PVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESN-----------SVEVNVKSEFQVLAGPISDIS 123 (615)
T ss_dssp SEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGT-----------EEEEEEEEEEECCSSCEEEEE
T ss_pred cceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccc-----------cccccccchhhcccccEEEEE
Confidence 45566889999 99999999 99999999988 9999997552000 001126778899999999999
Q ss_pred eecccceeccccccCCCCEEEEEeCC----CcEEEEcCCCCCceeEEEeccccccEEE--EecCCC-EEEEEeCCCcEEE
Q 001039 835 CVTKREVWDLVGDREDAGFFISGSTD----CLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRG-KVVSGSDDQSVLV 907 (1179)
Q Consensus 835 ~s~~~~~~~~~~~s~d~~~Lasgs~D----g~I~lWd~~~~~~~~~~~l~~h~~~v~~--~s~d~~-~l~sgs~dg~I~i 907 (1179)
|+ |++++|++++.| +.|++||. ......+.+|...|.+ +++++. .+++++.||.|++
T Consensus 124 ~s------------~~~~~l~~~~~~~~~~~~v~~~d~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~v 187 (615)
T 1pgu_A 124 WD------------FEGRRLCVVGEGRDNFGVFISWDS----GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVF 187 (615)
T ss_dssp EC------------TTSSEEEEEECCSSCSEEEEETTT----CCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEE
T ss_pred Ee------------CCCCEEEEeccCCCCccEEEEEEC----CCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEE
Confidence 98 899999999988 78999983 3456788999999986 478887 8999999999999
Q ss_pred EECCCCeEEEEeecCCC---cEEEEEEe-C-CCEEEEEEcCCeEEEEeCCCCeEEEEe-c---cCCCcEEEEEEcCCCCE
Q 001039 908 WDKQTSQLLEELKGHDA---QVSCVRML-S-GERVLTASHDGTVKMWDVRTDTCVATV-G---RCSSAVLCMEYDDSTGI 978 (1179)
Q Consensus 908 wd~~t~~~~~~~~~h~~---~V~~l~~s-~-~~~l~sgs~dg~I~iwd~~~~~~~~~~-~---~~~~~v~~l~~sp~~~~ 978 (1179)
||..+++.+..+.+|.. .|.+++|+ + ++++++++.||.|++||+++++.+..+ . .|...|.+++|+ ++++
T Consensus 188 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~ 266 (615)
T 1pgu_A 188 YQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQK 266 (615)
T ss_dssp EETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSE
T ss_pred EeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCE
Confidence 99999999999999999 99999999 5 789999999999999999999999998 6 899999999999 9999
Q ss_pred EEEEeCCCeEEEEeCCCCceeEEeecC---------------------------------------------CCCeE---
Q 001039 979 LAAGGRDAVANIWDIRAGRQMHKFLGH---------------------------------------------TKWIR--- 1010 (1179)
Q Consensus 979 l~sgs~dg~I~iwD~~~~~~~~~~~~~---------------------------------------------~~~I~--- 1010 (1179)
+++++.||.|++||+++++.+..+..+ ...|.
T Consensus 267 l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~ 346 (615)
T 1pgu_A 267 FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALT 346 (615)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEE
T ss_pred EEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEE
Confidence 999999999999999877655544332 22222
Q ss_pred ------------------------------EEEE----------------------------------------------
Q 001039 1011 ------------------------------SIRM---------------------------------------------- 1014 (1179)
Q Consensus 1011 ------------------------------sl~~---------------------------------------------- 1014 (1179)
++++
T Consensus 347 ~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 426 (615)
T 1pgu_A 347 VNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTND 426 (615)
T ss_dssp TTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETT
T ss_pred ecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCC
Confidence 2222
Q ss_pred ----------------------------cCCEEEEEeC-CCcEEEEEccCCeee-EEeecCCcCEEEEEEecCCCEEEEE
Q 001039 1015 ----------------------------DRDTVITGSD-DWTARMWSISRGTCD-AVLACHAGPVQCVEYSSSDRGIITG 1064 (1179)
Q Consensus 1015 ----------------------------~~~~l~sgs~-dg~I~iwd~~~~~~~-~~~~~h~~~V~~l~~spdg~~l~sg 1064 (1179)
+++.+++++. ||.|++||+.+++.. ..+.+|...|++++|+|++++|++|
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 506 (615)
T 1pgu_A 427 DDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAG 506 (615)
T ss_dssp SEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEE
T ss_pred CceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEc
Confidence 1233444444 555555555554443 4556788999999999999999999
Q ss_pred eCCCcEEEEEcCCCCcceEEEeecc-cCceEEEE--ec----------CCCEEEEEECCCcEEEEeCCCCCcCcccCCCC
Q 001039 1065 SSDGLLRFWENDDAGGIKCVKNVTI-HSSAILSI--NA----------GDHWLGIGAADNSMSLFHRPQERLGGFSGTGS 1131 (1179)
Q Consensus 1065 s~Dg~I~iwd~~~~~~~~~~~~~~~-h~~~i~si--s~----------dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~ 1131 (1179)
+.||.|++||+.+ .+.+..+.+ |...|.++ +| ++++|++|+.||.|++||+.+. .
T Consensus 507 ~~dg~i~iw~~~~---~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~---------~ 574 (615)
T 1pgu_A 507 DVMGKILLYDLQS---REVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP---------M 574 (615)
T ss_dssp ETTSCEEEEETTT---TEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT---------T
T ss_pred CCCCeEEEeeCCC---CcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCC---------c
Confidence 9999999999988 566777777 88888766 68 9999999999999999999732 1
Q ss_pred ccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001039 1132 KMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATIN 1178 (1179)
Q Consensus 1132 ~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~tg 1178 (1179)
++...+.+|...|++++|+||++ |++++.||+|++|+++++
T Consensus 575 -----~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~~ 615 (615)
T 1pgu_A 575 -----KIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVLE 615 (615)
T ss_dssp -----CCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC--
T ss_pred -----eechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeecC
Confidence 34566789999999999999999 999999999999999874
No 7
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2e-39 Score=439.47 Aligned_cols=382 Identities=19% Similarity=0.358 Sum_probs=316.8
Q ss_pred CCcccccCCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeec
Q 001039 760 QPAEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVT 837 (1179)
Q Consensus 760 ~~~~~~gh~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~ 837 (1179)
......+|...|.+++|||||+++|+|+.| |++||+.++. .+..+.+|.+.|++++|+
T Consensus 607 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~-------------------~~~~~~~h~~~v~~~~~s- 666 (1249)
T 3sfz_A 607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGE-------------------KLLDIKAHEDEVLCCAFS- 666 (1249)
T ss_dssp CSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-------------------EEEEECCCSSCEEEEEEC-
T ss_pred ceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCC-------------------EEEEeccCCCCEEEEEEe-
Confidence 344567899999999999999999999988 9999999887 788999999999999998
Q ss_pred ccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEE--ec--CCCEEEEEeCCCcEEEEECCCC
Q 001039 838 KREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NS--DRGKVVSGSDDQSVLVWDKQTS 913 (1179)
Q Consensus 838 ~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~--s~--d~~~l~sgs~dg~I~iwd~~t~ 913 (1179)
|++++|++|+.||+|++||+. +......+.+|...|.++ ++ ++..+++|+.||+|++||+.++
T Consensus 667 -----------~~~~~l~s~~~d~~v~vwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~ 733 (1249)
T 3sfz_A 667 -----------SDDSYIATCSADKKVKIWDSA--TGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK 733 (1249)
T ss_dssp -----------TTSSEEEEEETTSEEEEEETT--TCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSS
T ss_pred -----------cCCCEEEEEeCCCeEEEEECC--CCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCc
Confidence 899999999999999999976 556778899999999865 56 5568999999999999999999
Q ss_pred eEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEe--------------------------------
Q 001039 914 QLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATV-------------------------------- 960 (1179)
Q Consensus 914 ~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~-------------------------------- 960 (1179)
+.+..+.+|...|.+++|+ ++..+++|+.||+|++||+.+++....+
T Consensus 734 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 813 (1249)
T 3sfz_A 734 ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKI 813 (1249)
T ss_dssp SEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEE
T ss_pred chhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEE
Confidence 9999999999999999999 6889999999999999999877554332
Q ss_pred -----------------------ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcC-
Q 001039 961 -----------------------GRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR- 1016 (1179)
Q Consensus 961 -----------------------~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~- 1016 (1179)
.+|...+.+++|+|+++.+++++.||.|++||+.++..+..+.+|...|.+++|++
T Consensus 814 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spd 893 (1249)
T 3sfz_A 814 IVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPD 893 (1249)
T ss_dssp EEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred EEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCC
Confidence 15667889999999999999999999999999999999999999999999999954
Q ss_pred -CEEEEEeCCCcEEEEEcc-------------------------------------------------------------
Q 001039 1017 -DTVITGSDDWTARMWSIS------------------------------------------------------------- 1034 (1179)
Q Consensus 1017 -~~l~sgs~dg~I~iwd~~------------------------------------------------------------- 1034 (1179)
+.+++++.||+|++||+.
T Consensus 894 g~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g 973 (1249)
T 3sfz_A 894 GSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHL 973 (1249)
T ss_dssp SSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTS
T ss_pred CCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCC
Confidence 488889888888888853
Q ss_pred ------------------CCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEE
Q 001039 1035 ------------------RGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILS 1096 (1179)
Q Consensus 1035 ------------------~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~s 1096 (1179)
+++....+.+|.+.|++++|+|+|+++++++.||.|++||+.++ ... ....|...+.+
T Consensus 974 ~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~---~~~-~~~~~~~~v~~ 1049 (1249)
T 3sfz_A 974 EYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTG---DYV-FLQAHQETVKD 1049 (1249)
T ss_dssp SEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTT---EEE-CCBCCSSCEEE
T ss_pred CEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC---ceE-EEecCCCcEEE
Confidence 22334445678889999999999999999999999999999873 222 34466666665
Q ss_pred E--ecCCCEEEEEECCCcEEEEeCCCCCcC-------------cccCCCC---------ccccc-----eeeeecCCCcc
Q 001039 1097 I--NAGDHWLGIGAADNSMSLFHRPQERLG-------------GFSGTGS---------KMSGW-----QLYRTPQKTVA 1147 (1179)
Q Consensus 1097 i--s~dg~~lasgs~Dg~I~iwd~~~~~~~-------------~~~~~g~---------~~~~~-----~~~~~~~~h~~ 1147 (1179)
+ ++ +..+++++.||.|++||+.+++.. .++++|. .+..| .....+.+|.+
T Consensus 1050 ~~~~~-~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~ 1128 (1249)
T 3sfz_A 1050 FRLLQ-DSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNG 1128 (1249)
T ss_dssp EEECS-SSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSS
T ss_pred EEEcC-CCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCC
Confidence 5 34 345667777888888887654331 1112221 11112 34456678999
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 001039 1148 VVRCIASDLERKRICSGGRNGLLRLWEATINI 1179 (1179)
Q Consensus 1148 ~V~~v~fspdg~~Lasgs~Dg~I~vWdv~tg~ 1179 (1179)
.|++++|+|||++||+|+.||+|++||+.+|.
T Consensus 1129 ~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~ 1160 (1249)
T 3sfz_A 1129 CVRCSAFSLDGILLATGDDNGEIRIWNVSDGQ 1160 (1249)
T ss_dssp CEEEEEECSSSSEEEEEETTSCCCEEESSSSC
T ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEECCCCc
Confidence 99999999999999999999999999998863
No 8
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-39 Score=416.41 Aligned_cols=377 Identities=12% Similarity=0.085 Sum_probs=285.9
Q ss_pred cccCCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccce
Q 001039 764 ASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREV 841 (1179)
Q Consensus 764 ~~gh~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~ 841 (1179)
..||...|.+++|||||+++|+|+.| |++|+..+.+ ... ...|.++|++++|+
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~-------------------~~~-~~~~~~~V~~l~fs----- 67 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVE-------------------VVI-KLEDRSAIKEMRFV----- 67 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCE-------------------EEE-ECSSCCCEEEEEEE-----
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcE-------------------EEE-EcCCCCCEEEEEEc-----
Confidence 46899999999999999999999998 9999987544 222 34588999999998
Q ss_pred eccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEE--ecCCCEEEEEeCCCcEEEEECCCCeEE---
Q 001039 842 WDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQLL--- 916 (1179)
Q Consensus 842 ~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~--s~d~~~l~sgs~dg~I~iwd~~t~~~~--- 916 (1179)
+ +++|++++.|++|++||+. .......+. |...|+++ +|+++++++|+.||+|++||+.+++..
T Consensus 68 -------p-g~~L~S~s~D~~v~lWd~~--~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~ 136 (902)
T 2oaj_A 68 -------K-GIYLVVINAKDTVYVLSLY--SQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFK 136 (902)
T ss_dssp -------T-TTEEEEEETTCEEEEEETT--TCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred -------C-CCEEEEEECcCeEEEEECC--CCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccce
Confidence 7 7899999999999999987 344555564 66778765 799999999999999999999998764
Q ss_pred --------EEeecCCCcEEEEEEeC--CCEEEEEEcCCeEEEEeCCCCeEEEEeccC------------------CCcEE
Q 001039 917 --------EELKGHDAQVSCVRMLS--GERVLTASHDGTVKMWDVRTDTCVATVGRC------------------SSAVL 968 (1179)
Q Consensus 917 --------~~~~~h~~~V~~l~~s~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~------------------~~~v~ 968 (1179)
....+|.+.|.+++|++ +..+++|+.||.| +||+++++.+..+..+ ...|.
T Consensus 137 i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~ 215 (902)
T 2oaj_A 137 LDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVI 215 (902)
T ss_dssp ECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEE
T ss_pred eccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeE
Confidence 23367889999999995 3689999999999 9999999998888655 46799
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE--e---ec-------------CCCCeEEEEEc----C---CEEEEEe
Q 001039 969 CMEYDDSTGILAAGGRDAVANIWDIRAGRQMHK--F---LG-------------HTKWIRSIRMD----R---DTVITGS 1023 (1179)
Q Consensus 969 ~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~--~---~~-------------~~~~I~sl~~~----~---~~l~sgs 1023 (1179)
+++|+|+|++|++|+.||.|++||+++++.+.. + .. |...|.+++|. + ..+++|+
T Consensus 216 ~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~ 295 (902)
T 2oaj_A 216 QSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHK 295 (902)
T ss_dssp EEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEE
T ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCC
Confidence 999999999999999999999999999887653 2 11 23467888772 2 2455554
Q ss_pred CC----------------------------------------------------------------------------Cc
Q 001039 1024 DD----------------------------------------------------------------------------WT 1027 (1179)
Q Consensus 1024 ~d----------------------------------------------------------------------------g~ 1027 (1179)
.| |.
T Consensus 296 ~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~ 375 (902)
T 2oaj_A 296 SISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGE 375 (902)
T ss_dssp CSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSC
T ss_pred CCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCc
Confidence 33 34
Q ss_pred EEEEEccCCeeeEE-------eecCCcCEEE----------------------------------EEEecCCCEEEEEeC
Q 001039 1028 ARMWSISRGTCDAV-------LACHAGPVQC----------------------------------VEYSSSDRGIITGSS 1066 (1179)
Q Consensus 1028 I~iwd~~~~~~~~~-------~~~h~~~V~~----------------------------------l~~spdg~~l~sgs~ 1066 (1179)
|++||+.++..... +..|...|++ ++|+|++++|++|+.
T Consensus 376 l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~ 455 (902)
T 2oaj_A 376 IETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHS 455 (902)
T ss_dssp EEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEET
T ss_pred EEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecC
Confidence 44444433321111 1112233444 445788999999999
Q ss_pred CCcEEEEEcCCCCcc--eEEE-eec-----ccCceEEEE--ecCCCEEEEEECCCcEEEEeCCCCCcCcc----------
Q 001039 1067 DGLLRFWENDDAGGI--KCVK-NVT-----IHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGF---------- 1126 (1179)
Q Consensus 1067 Dg~I~iwd~~~~~~~--~~~~-~~~-----~h~~~i~si--s~dg~~lasgs~Dg~I~iwd~~~~~~~~~---------- 1126 (1179)
||+|++||+.++... ..+. .+. +|...|.++ +|+|++||+|+.||+|++||+.+.+....
T Consensus 456 DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~ 535 (902)
T 2oaj_A 456 NGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLE 535 (902)
T ss_dssp TSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC-------------
T ss_pred CCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccc
Confidence 999999999885321 1111 111 677778665 89999999999999999999975431000
Q ss_pred --------------------cCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001039 1127 --------------------SGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATIN 1178 (1179)
Q Consensus 1127 --------------------~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~tg 1178 (1179)
...+.....++++..+.+|.+.|++|+||||| +||+|+.||+|++||++++
T Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~ 606 (902)
T 2oaj_A 536 MNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGP 606 (902)
T ss_dssp --CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTT
T ss_pred eeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCC
Confidence 00000011235677888999999999999999 9999999999999998764
No 9
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=8.6e-38 Score=389.95 Aligned_cols=366 Identities=13% Similarity=0.201 Sum_probs=299.6
Q ss_pred ccCCcceEEEEEccCCCceeeccCc-eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCc-eEEEEeeccccee
Q 001039 765 SGIGRSWVQSMFSREASSRSHSFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGA-ITALHCVTKREVW 842 (1179)
Q Consensus 765 ~gh~~~i~~~~fSpdg~~las~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~-V~~v~~s~~~~~~ 842 (1179)
..|...+.+++|||||+++|+++.. |++||+.++... ....+.+.+|.+. |++++|+
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~---------------~~~~~~~~~h~~~~v~~~~~s------ 73 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSK---------------VPPVVQFTGHGSSVVTTVKFS------ 73 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCS---------------SCSEEEECTTTTSCEEEEEEC------
T ss_pred CCccCceeEEEECCCCCEEEEecCCeEEEEECCCCCCc---------------cccceEEecCCCceEEEEEEC------
Confidence 3567888999999999999999877 999999976200 0168889999999 9999998
Q ss_pred ccccccC--CCCEEEEEeCCCcEEEEcCCCC------CceeEEEeccccccEEE--EecCCCEEEEEeCC----CcEEEE
Q 001039 843 DLVGDRE--DAGFFISGSTDCLVKIWDPSLR------GSELRATLKGHTRTVRA--INSDRGKVVSGSDD----QSVLVW 908 (1179)
Q Consensus 843 ~~~~~s~--d~~~Lasgs~Dg~I~lWd~~~~------~~~~~~~l~~h~~~v~~--~s~d~~~l~sgs~d----g~I~iw 908 (1179)
| ++++|++|+.||+|++||+... .......+.+|...|.+ ++++++++++++.+ +.|++|
T Consensus 74 ------p~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~ 147 (615)
T 1pgu_A 74 ------PIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISW 147 (615)
T ss_dssp ------SSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEET
T ss_pred ------cCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEE
Confidence 8 9999999999999999997533 34666788889999985 58999999999988 688888
Q ss_pred ECCCCeEEEEeecCCCcEEEEEEeC-CC-EEEEEEcCCeEEEEeCCCCeEEEEeccCCC---cEEEEEEcCC-CCEEEEE
Q 001039 909 DKQTSQLLEELKGHDAQVSCVRMLS-GE-RVLTASHDGTVKMWDVRTDTCVATVGRCSS---AVLCMEYDDS-TGILAAG 982 (1179)
Q Consensus 909 d~~t~~~~~~~~~h~~~V~~l~~s~-~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~---~v~~l~~sp~-~~~l~sg 982 (1179)
| +++.+..+.+|...|.+++|++ +. .+++++.||.|++||..+++.+..+..|.. .|.+++|+|+ +++++++
T Consensus 148 d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 225 (615)
T 1pgu_A 148 D--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITV 225 (615)
T ss_dssp T--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEE
T ss_pred E--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEE
Confidence 7 6788899999999999999994 44 799999999999999999999999999988 9999999999 9999999
Q ss_pred eCCCeEEEEeCCCCceeEEe-e---cCCCCeEEEEE-cCCEEEEEeCCCcEEEEEccCCeeeEEeec-------------
Q 001039 983 GRDAVANIWDIRAGRQMHKF-L---GHTKWIRSIRM-DRDTVITGSDDWTARMWSISRGTCDAVLAC------------- 1044 (1179)
Q Consensus 983 s~dg~I~iwD~~~~~~~~~~-~---~~~~~I~sl~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~------------- 1044 (1179)
+.||.|++||+++++.+..+ . .|...|.+++| +++.+++++.||.|++||+++++....+..
T Consensus 226 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (615)
T 1pgu_A 226 GSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVV 305 (615)
T ss_dssp ETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEE
T ss_pred eCCCeEEEEECCCCCEeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEE
Confidence 99999999999999999998 6 89999999999 566999999999999999987765544432
Q ss_pred --------------------------------CCcCEEEEEEec---------------------------------CCC
Q 001039 1045 --------------------------------HAGPVQCVEYSS---------------------------------SDR 1059 (1179)
Q Consensus 1045 --------------------------------h~~~V~~l~~sp---------------------------------dg~ 1059 (1179)
|.+.|++++| | +++
T Consensus 306 ~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~ 384 (615)
T 1pgu_A 306 ATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQ 384 (615)
T ss_dssp EEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTT
T ss_pred eCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCc
Confidence 2223333332 2 133
Q ss_pred EEEEEeCCCcEEE-------------------------------------------------------------------
Q 001039 1060 GIITGSSDGLLRF------------------------------------------------------------------- 1072 (1179)
Q Consensus 1060 ~l~sgs~Dg~I~i------------------------------------------------------------------- 1072 (1179)
.+++++.||.|++
T Consensus 385 ~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 464 (615)
T 1pgu_A 385 EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLE 464 (615)
T ss_dssp CCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEET
T ss_pred EEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeec
Confidence 3444444333333
Q ss_pred -------EEcCCCCcceEE-EeecccCceEEEE--ecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeec
Q 001039 1073 -------WENDDAGGIKCV-KNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTP 1142 (1179)
Q Consensus 1073 -------wd~~~~~~~~~~-~~~~~h~~~i~si--s~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~ 1142 (1179)
||+.++ ... ..+.+|...+.++ +|++++|++|+.||.|++||+.+. +....+
T Consensus 465 ~d~~i~~~~~~~~---~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~---------------~~~~~~ 526 (615)
T 1pgu_A 465 EGNTIQVFKLSDL---EVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR---------------EVKTSR 526 (615)
T ss_dssp TTSCEEEEETTEE---EEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---------------EEEECC
T ss_pred CCCeEEEEECCCc---cccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCC---------------cceeEe
Confidence 333331 111 4456677777665 789999999999999999999733 556666
Q ss_pred CC-CcccEEEEEEcC----------CCCEEEEEeCCCcEEEEECCCC
Q 001039 1143 QK-TVAVVRCIASDL----------ERKRICSGGRNGLLRLWEATIN 1178 (1179)
Q Consensus 1143 ~~-h~~~V~~v~fsp----------dg~~Lasgs~Dg~I~vWdv~tg 1178 (1179)
.+ |...|++++|+| ++++||+|+.||+|++||+.++
T Consensus 527 ~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 573 (615)
T 1pgu_A 527 WAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP 573 (615)
T ss_dssp SCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT
T ss_pred ecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCC
Confidence 66 999999999999 9999999999999999999875
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-38 Score=414.08 Aligned_cols=387 Identities=12% Similarity=0.099 Sum_probs=291.1
Q ss_pred cc-cCCCCCC-----CCC-------CCCCCcccccCCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCC
Q 001039 745 GM-PSPLSKD-----ATN-------DDQQPAEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDS 809 (1179)
Q Consensus 745 ~~-fSP~g~~-----~~~-------~~~~~~~~~gh~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~ 809 (1179)
++ |||+|.. .++ .+.+.....+|...|.+++|+| |++|++++.| |++||+.+++
T Consensus 22 ~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~---------- 90 (902)
T 2oaj_A 22 AAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQK---------- 90 (902)
T ss_dssp EEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCS----------
T ss_pred EEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCc----------
Confidence 66 8999871 111 2333344456778899999999 8899999988 9999999776
Q ss_pred CCCCcccccceEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeE-----------EE
Q 001039 810 TAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELR-----------AT 878 (1179)
Q Consensus 810 ~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~-----------~~ 878 (1179)
.+..+. |.+.|++++|+ |++++|++|+.||+|++||+.. ..+. ..
T Consensus 91 ---------~~~~~~-~~~~V~~v~~s------------p~g~~l~sgs~dg~V~lwd~~~--~~~~~~~i~~~~~~~~~ 146 (902)
T 2oaj_A 91 ---------VLTTVF-VPGKITSIDTD------------ASLDWMLIGLQNGSMIVYDIDR--DQLSSFKLDNLQKSSFF 146 (902)
T ss_dssp ---------EEEEEE-CSSCEEEEECC------------TTCSEEEEEETTSCEEEEETTT--TEEEEEEECCHHHHHTC
T ss_pred ---------EEEEEc-CCCCEEEEEEC------------CCCCEEEEEcCCCcEEEEECCC--Cccccceeccccccccc
Confidence 566665 77899999998 8999999999999999999873 2221 23
Q ss_pred eccccccEEEE--ecC-CCEEEEEeCCCcEEEEECCCCeEEEEeecC------------------CCcEEEEEEe-CCCE
Q 001039 879 LKGHTRTVRAI--NSD-RGKVVSGSDDQSVLVWDKQTSQLLEELKGH------------------DAQVSCVRML-SGER 936 (1179)
Q Consensus 879 l~~h~~~v~~~--s~d-~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h------------------~~~V~~l~~s-~~~~ 936 (1179)
+.+|.+.|.++ +|+ +..+++|+.||+| +||+++++.+..+..| ...|.+++|+ ++.+
T Consensus 147 ~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~ 225 (902)
T 2oaj_A 147 PAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLH 225 (902)
T ss_dssp SSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSE
T ss_pred cccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCE
Confidence 46788888864 775 4789999999999 9999999999888766 4779999999 6889
Q ss_pred EEEEEcCCeEEEEeCCCCeEEEE--ec---c-------------CCCcEEEEEEc----CCC-CEEEEEeCC--------
Q 001039 937 VLTASHDGTVKMWDVRTDTCVAT--VG---R-------------CSSAVLCMEYD----DST-GILAAGGRD-------- 985 (1179)
Q Consensus 937 l~sgs~dg~I~iwd~~~~~~~~~--~~---~-------------~~~~v~~l~~s----p~~-~~l~sgs~d-------- 985 (1179)
+++|+.||+|++||+++++++.. +. . +...|.+++|+ |++ ..+++|+.+
T Consensus 226 lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v 305 (902)
T 2oaj_A 226 IITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSL 305 (902)
T ss_dssp EEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCE
T ss_pred EEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceE
Confidence 99999999999999999987654 21 1 24468899985 332 345555433
Q ss_pred --------------------------------------------------------------------CeEEEEeCCCCc
Q 001039 986 --------------------------------------------------------------------AVANIWDIRAGR 997 (1179)
Q Consensus 986 --------------------------------------------------------------------g~I~iwD~~~~~ 997 (1179)
|.|++||+.++.
T Consensus 306 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~ 385 (902)
T 2oaj_A 306 TMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGI 385 (902)
T ss_dssp EEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCC
T ss_pred EEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCC
Confidence 334444443332
Q ss_pred eeEE-------eecCCCCeEEEEE------------------------------------cCCEEEEEeCCCcEEEEEcc
Q 001039 998 QMHK-------FLGHTKWIRSIRM------------------------------------DRDTVITGSDDWTARMWSIS 1034 (1179)
Q Consensus 998 ~~~~-------~~~~~~~I~sl~~------------------------------------~~~~l~sgs~dg~I~iwd~~ 1034 (1179)
.... +..|...|+++++ +++.+++|+.||+|++||+.
T Consensus 386 ~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~ 465 (902)
T 2oaj_A 386 FTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDAS 465 (902)
T ss_dssp EECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESS
T ss_pred cccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECC
Confidence 1111 1122233444433 23489999999999999998
Q ss_pred CCeee----EE--ee-----cCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCc-----------------------
Q 001039 1035 RGTCD----AV--LA-----CHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGG----------------------- 1080 (1179)
Q Consensus 1035 ~~~~~----~~--~~-----~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~----------------------- 1080 (1179)
++... .. +. +|...|++++|+|||++||+|+.||+|++||+.++..
T Consensus 466 ~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (902)
T 2oaj_A 466 HGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNN 545 (902)
T ss_dssp CCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGG
T ss_pred CccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccC
Confidence 87421 11 11 7889999999999999999999999999999986421
Q ss_pred -------------------ceEEEeecccCceEEEE--ecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceee
Q 001039 1081 -------------------IKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLY 1139 (1179)
Q Consensus 1081 -------------------~~~~~~~~~h~~~i~si--s~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~ 1139 (1179)
..++..+.+|...|.++ +||| +||+|+.|++|++||+.+..+ +.. ...
T Consensus 546 ~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~---------~~~-~~~ 614 (902)
T 2oaj_A 546 TNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAI---------IYM-ENI 614 (902)
T ss_dssp SSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEE---------EEE-EEG
T ss_pred CccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeE---------EEE-eeh
Confidence 13567788899988766 7999 999999999999999874311 000 011
Q ss_pred eecC-CCcccEEEEEEc-----CCC---CEEEEEeCCCcEEEEEC---CCC
Q 001039 1140 RTPQ-KTVAVVRCIASD-----LER---KRICSGGRNGLLRLWEA---TIN 1178 (1179)
Q Consensus 1140 ~~~~-~h~~~V~~v~fs-----pdg---~~Lasgs~Dg~I~vWdv---~tg 1178 (1179)
..+. +|.+.|++|+|+ ||| ++|++|+.||+|++||+ .+|
T Consensus 615 ~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g 665 (902)
T 2oaj_A 615 REISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGG 665 (902)
T ss_dssp GGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGG
T ss_pred hHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCC
Confidence 3454 899999999999 886 89999999999999998 554
No 11
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.7e-38 Score=375.33 Aligned_cols=283 Identities=25% Similarity=0.496 Sum_probs=264.4
Q ss_pred CcccccCCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecc
Q 001039 761 PAEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTK 838 (1179)
Q Consensus 761 ~~~~~gh~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~ 838 (1179)
...+.||...|.+++|+|+|+++++|+.| |++||+.++. ..+.+.+|.+.|++++|+
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~-------------------~~~~l~~h~~~V~~v~~~-- 159 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD-------------------FERTLKGHTDSVQDISFD-- 159 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC-------------------CCEEECCCSSCEEEEEEC--
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-------------------EEEEEeccCCcEEEEEEc--
Confidence 34567999999999999999999999998 9999999877 678899999999999998
Q ss_pred cceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEE--ecCCCEEEEEeCCCcEEEEECCCCeEE
Q 001039 839 REVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQLL 916 (1179)
Q Consensus 839 ~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~--s~d~~~l~sgs~dg~I~iwd~~t~~~~ 916 (1179)
+++++|++|+.||+|++||+. +......+.+|...|.++ +|+++++++|+.||+|++||+.+++++
T Consensus 160 ----------~~~~~l~sgs~D~~i~iwd~~--~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~ 227 (410)
T 1vyh_C 160 ----------HSGKLLASCSADMTIKLWDFQ--GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV 227 (410)
T ss_dssp ----------TTSSEEEEEETTSCCCEEETT--SSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEE
T ss_pred ----------CCCCEEEEEeCCCeEEEEeCC--CCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 899999999999999999976 566778899999999864 789999999999999999999999999
Q ss_pred EEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCC--------------------
Q 001039 917 EELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDS-------------------- 975 (1179)
Q Consensus 917 ~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~-------------------- 975 (1179)
.++.+|...|.++.++ ++..+++|+.||+|++||+.++++...+..|...|.+++|+|+
T Consensus 228 ~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (410)
T 1vyh_C 228 KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKP 307 (410)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------
T ss_pred EEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCC
Confidence 9999999999999999 6889999999999999999999999999999999999999996
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcC--CEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEE
Q 001039 976 TGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR--DTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVE 1053 (1179)
Q Consensus 976 ~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~ 1053 (1179)
+.++++|+.||.|++||+++++++..+.+|...|.+++|++ .++++|+.||+|++||+.+++++..+.+|...|++++
T Consensus 308 g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~ 387 (410)
T 1vyh_C 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLD 387 (410)
T ss_dssp CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEE
Confidence 67899999999999999999999999999999999999964 5899999999999999999999999999999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEEcC
Q 001039 1054 YSSSDRGIITGSSDGLLRFWEND 1076 (1179)
Q Consensus 1054 ~spdg~~l~sgs~Dg~I~iwd~~ 1076 (1179)
|+|++.+|++|+.||+|++|+.+
T Consensus 388 ~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 388 FHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp ECSSSSCEEEEETTSEEEEEC--
T ss_pred EcCCCCEEEEEeCCCcEEEEeCC
Confidence 99999999999999999999863
No 12
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.8e-38 Score=360.20 Aligned_cols=290 Identities=22% Similarity=0.378 Sum_probs=263.0
Q ss_pred ceEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEE--ecCCCEE
Q 001039 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDRGKV 896 (1179)
Q Consensus 819 ~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~--s~d~~~l 896 (1179)
..+.+.+|.+.|++++|++... +++.+|+||+.||+|++||+..........+.+|...|.++ ++++..+
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~--------~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l 95 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKK--------ENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIA 95 (321)
T ss_dssp EEEETTSSSSCEEEEEEC---------------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEE
T ss_pred eeeecccCCCcEEEEEEecCCC--------CCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEE
Confidence 5567789999999999985221 46789999999999999998644445566789999999865 7899999
Q ss_pred EEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCC
Q 001039 897 VSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDS 975 (1179)
Q Consensus 897 ~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~ 975 (1179)
++++.||+|++||+.+++.+..+..|...+.+++|+ +++++++|+.||.|++||+++++....+..+...+.+++|+|+
T Consensus 96 ~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spd 175 (321)
T 3ow8_A 96 ASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPD 175 (321)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTT
T ss_pred EEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCC
Confidence 999999999999999999999999999999999999 6889999999999999999999999999889999999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcC--CEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEE
Q 001039 976 TGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR--DTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVE 1053 (1179)
Q Consensus 976 ~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~ 1053 (1179)
++++++|+.||.|++||+++++.+..+.+|...|.+++|++ .++++|+.||+|++||+++++....+.+|...|++++
T Consensus 176 g~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~ 255 (321)
T 3ow8_A 176 GKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVA 255 (321)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEE
Confidence 99999999999999999999999999999999999999965 4999999999999999999999999999999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEE--ecCCCEEEEEECCCcEEEEeCC
Q 001039 1054 YSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRP 1119 (1179)
Q Consensus 1054 ~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~si--s~dg~~lasgs~Dg~I~iwd~~ 1119 (1179)
|+|++++|++|+.||+|++||+.+ ..++..+.+|...|.++ ++++++|++++.||+|++||.+
T Consensus 256 ~sp~~~~l~s~s~D~~v~iwd~~~---~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 256 FCPDDTHFVSSSSDKSVKVWDVGT---RTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTT---TEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred ECCCCCEEEEEeCCCcEEEEeCCC---CEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 999999999999999999999988 57888888999998766 7899999999999999999974
No 13
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.6e-38 Score=430.71 Aligned_cols=396 Identities=19% Similarity=0.317 Sum_probs=316.5
Q ss_pred cCcc-cc-cCCCCC-----CCCC-------CCCC-CcccccCCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCC
Q 001039 741 SLSN-GM-PSPLSK-----DATN-------DDQQ-PAEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGT 803 (1179)
Q Consensus 741 ~~~~-~~-fSP~g~-----~~~~-------~~~~-~~~~~gh~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~ 803 (1179)
.+.+ ++ |||+|+ ..++ .+++ ...+.+|...|.+++|||||+++|+++.| |++||+.++.
T Consensus 615 ~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~---- 690 (1249)
T 3sfz_A 615 TDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGK---- 690 (1249)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC----
T ss_pred cccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCc----
Confidence 3455 67 999997 1111 2333 34457899999999999999999999988 9999999877
Q ss_pred CCCCCCCCCCcccccceEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEecccc
Q 001039 804 PRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHT 883 (1179)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~ 883 (1179)
.+..+.+|.+.|++++|++. .++.++++|+.||+|++||+. .......+.+|.
T Consensus 691 ---------------~~~~~~~~~~~v~~~~~~~~----------~~~~~l~sg~~d~~v~vwd~~--~~~~~~~~~~h~ 743 (1249)
T 3sfz_A 691 ---------------LVHTYDEHSEQVNCCHFTNK----------SNHLLLATGSNDFFLKLWDLN--QKECRNTMFGHT 743 (1249)
T ss_dssp ---------------EEEEEECCSSCEEEEEECSS----------SSCCEEEEEETTSCEEEEETT--SSSEEEEECCCS
T ss_pred ---------------eEEEEcCCCCcEEEEEEecC----------CCceEEEEEeCCCeEEEEECC--CcchhheecCCC
Confidence 78899999999999999831 266799999999999999976 556678889999
Q ss_pred ccEEE--EecCCCEEEEEeCCCcEEEEECCCCeEEEEee-----------------------------------------
Q 001039 884 RTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLLEELK----------------------------------------- 920 (1179)
Q Consensus 884 ~~v~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~----------------------------------------- 920 (1179)
..|.+ ++++++++++|+.||+|++||+.+++....+.
T Consensus 744 ~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~ 823 (1249)
T 3sfz_A 744 NSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLL 823 (1249)
T ss_dssp SCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEE
T ss_pred CCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEE
Confidence 99985 58999999999999999999998776544332
Q ss_pred --------------cCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC
Q 001039 921 --------------GHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRD 985 (1179)
Q Consensus 921 --------------~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~d 985 (1179)
+|...|.+++|+ ++..+++++.||.|++||+.++..+..+.+|...|.+++|+|+++.+++++.|
T Consensus 824 ~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~d 903 (1249)
T 3sfz_A 824 FDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDD 903 (1249)
T ss_dssp EETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCC
Confidence 677888999999 68899999999999999999999999999999999999999999999999998
Q ss_pred CeEEEEeCC-----------------------------------------------------------------------
Q 001039 986 AVANIWDIR----------------------------------------------------------------------- 994 (1179)
Q Consensus 986 g~I~iwD~~----------------------------------------------------------------------- 994 (1179)
|.|++||+.
T Consensus 904 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g 983 (1249)
T 3sfz_A 904 QTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDG 983 (1249)
T ss_dssp SCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTS
T ss_pred CeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCC
Confidence 888888743
Q ss_pred --------CCceeEEeecCCCCeEEEEEcC--CEEEEEeCCCcEEEEEccC-----------------------------
Q 001039 995 --------AGRQMHKFLGHTKWIRSIRMDR--DTVITGSDDWTARMWSISR----------------------------- 1035 (1179)
Q Consensus 995 --------~~~~~~~~~~~~~~I~sl~~~~--~~l~sgs~dg~I~iwd~~~----------------------------- 1035 (1179)
+++....+.+|...|.+++|++ +.+++++.||.|++||+.+
T Consensus 984 ~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~ 1063 (1249)
T 3sfz_A 984 AIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSF 1063 (1249)
T ss_dssp CCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEES
T ss_pred CEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEC
Confidence 2333344556777788888744 3677777777666666544
Q ss_pred -----------CeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEE--ecCCC
Q 001039 1036 -----------GTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSI--NAGDH 1102 (1179)
Q Consensus 1036 -----------~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~si--s~dg~ 1102 (1179)
++....+.+|.+.|++++|+|+++++++++.||.|++||+.++ .++..+.+|...|.++ +|+|+
T Consensus 1064 dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~---~~~~~l~~h~~~v~~~~~s~dg~ 1140 (1249)
T 3sfz_A 1064 DGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLL---SPLHELKGHNGCVRCSAFSLDGI 1140 (1249)
T ss_dssp SSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSS---SCSBCCCCCSSCEEEEEECSSSS
T ss_pred CCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCc---ceeeeeccCCCcEEEEEECCCCC
Confidence 4445556678889999999999999999999999999999884 4556677888888665 79999
Q ss_pred EEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001039 1103 WLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATIN 1178 (1179)
Q Consensus 1103 ~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~tg 1178 (1179)
+|++|+.||.|++||+.+++..... ..+.......+|.+.|++++|+|||++|++++ |+|++||+.+|
T Consensus 1141 ~lat~~~dg~i~vwd~~~~~~~~~~------~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g 1208 (1249)
T 3sfz_A 1141 LLATGDDNGEIRIWNVSDGQLLHSC------APISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATG 1208 (1249)
T ss_dssp EEEEEETTSCCCEEESSSSCCCCCC------CCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSC
T ss_pred EEEEEeCCCEEEEEECCCCceEEEe------ccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEECCCC
Confidence 9999999999999999854321110 01122223467899999999999999999986 89999999886
No 14
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.4e-38 Score=373.51 Aligned_cols=282 Identities=26% Similarity=0.478 Sum_probs=263.0
Q ss_pred eEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEE--EecCCCEEE
Q 001039 820 IRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVV 897 (1179)
Q Consensus 820 ~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~--~s~d~~~l~ 897 (1179)
...+.+|.++|++++|+ |++++|++|+.||+|++||+. .......+.+|...|.+ +++++++|+
T Consensus 101 ~~~l~gh~~~V~~~~~~------------p~~~~l~s~s~Dg~i~vwd~~--~~~~~~~l~~h~~~V~~v~~~~~~~~l~ 166 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFH------------PVFSVMVSASEDATIKVWDYE--TGDFERTLKGHTDSVQDISFDHSGKLLA 166 (410)
T ss_dssp SCEEECCSSCEEEEEEC------------SSSSEEEEEESSSCEEEEETT--TCCCCEEECCCSSCEEEEEECTTSSEEE
T ss_pred eEeecccCCcEEEEEEc------------CCCCEEEEEeCCCeEEEEECC--CCcEEEEEeccCCcEEEEEEcCCCCEEE
Confidence 45789999999999998 899999999999999999976 45667889999999986 478999999
Q ss_pred EEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCC
Q 001039 898 SGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDST 976 (1179)
Q Consensus 898 sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~ 976 (1179)
+|+.||+|++||+.+++++..+.+|...|.+++|+ +++.+++|+.|++|++||++++.++..+.+|...|.++++++++
T Consensus 167 sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g 246 (410)
T 1vyh_C 167 SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG 246 (410)
T ss_dssp EEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS
T ss_pred EEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCC
Confidence 99999999999999999999999999999999999 67899999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcC----------------------CEEEEEeCCCcEEEEEcc
Q 001039 977 GILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR----------------------DTVITGSDDWTARMWSIS 1034 (1179)
Q Consensus 977 ~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~----------------------~~l~sgs~dg~I~iwd~~ 1034 (1179)
.++++|+.||.|++||+++++....+.+|...|.+++|++ .++++|+.||+|++||++
T Consensus 247 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~ 326 (410)
T 1vyh_C 247 TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS 326 (410)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETT
T ss_pred CEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECC
Confidence 9999999999999999999999999999999999999964 479999999999999999
Q ss_pred CCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEE--ecCCCEEEEEECCCc
Q 001039 1035 RGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNS 1112 (1179)
Q Consensus 1035 ~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~si--s~dg~~lasgs~Dg~ 1112 (1179)
++.++..+.+|.+.|++++|+|+|++|++|+.||.|++||+.+ .+++..+.+|...|.++ +|++.+|++|+.||+
T Consensus 327 ~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~---~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~ 403 (410)
T 1vyh_C 327 TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN---KRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQT 403 (410)
T ss_dssp TTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTT---SCCCEEEECCSSCEEEEEECSSSSCEEEEETTSE
T ss_pred CCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC---CceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCc
Confidence 9999999999999999999999999999999999999999987 45666777899888776 689999999999999
Q ss_pred EEEEeC
Q 001039 1113 MSLFHR 1118 (1179)
Q Consensus 1113 I~iwd~ 1118 (1179)
|++|+.
T Consensus 404 i~vW~~ 409 (410)
T 1vyh_C 404 VKVWEC 409 (410)
T ss_dssp EEEEC-
T ss_pred EEEEeC
Confidence 999986
No 15
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=8.9e-37 Score=366.17 Aligned_cols=321 Identities=25% Similarity=0.508 Sum_probs=289.5
Q ss_pred ceEEEecccCce-EEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEEecCCCEEE
Q 001039 819 NIRIIRGHAGAI-TALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVV 897 (1179)
Q Consensus 819 ~~~~l~gH~~~V-~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~ 897 (1179)
..+.+.+|.+.| +++. +++++|++|+.||+|++||+. .......+.+|...|.++..+++.++
T Consensus 110 ~~~~l~~h~~~v~~~~~--------------~~g~~l~sg~~dg~i~vwd~~--~~~~~~~~~~h~~~v~~~~~~~~~l~ 173 (445)
T 2ovr_B 110 SPKVLKGHDDHVITCLQ--------------FCGNRIVSGSDDNTLKVWSAV--TGKCLRTLVGHTGGVWSSQMRDNIII 173 (445)
T ss_dssp CCEEEECSTTSCEEEEE--------------EETTEEEEEETTSCEEEEETT--TCCEEEECCCCSSCEEEEEEETTEEE
T ss_pred eeEEecccCCCcEEEEE--------------EcCCEEEEEECCCcEEEEECC--CCcEEEEEcCCCCCEEEEEecCCEEE
Confidence 467899999875 5544 458999999999999999976 55677889999999999988899999
Q ss_pred EEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCC
Q 001039 898 SGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTG 977 (1179)
Q Consensus 898 sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~ 977 (1179)
+|+.||+|++||+.+++.+..+.+|...|.++.++ ++.+++|+.||+|++||+.+++.+..+.+|...|.++++ +++
T Consensus 174 s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~ 250 (445)
T 2ovr_B 174 SGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH-EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGR 250 (445)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE-TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSS
T ss_pred EEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec-CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCC
Confidence 99999999999999999999999999999999996 678999999999999999999999999999999999999 788
Q ss_pred EEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcCCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecC
Q 001039 978 ILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSS 1057 (1179)
Q Consensus 978 ~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd 1057 (1179)
.+++|+.||.|++||+++++.+..+.+|...|.++.++++.+++|+.||.|++||+++++.+..+.+|...+.++.++
T Consensus 251 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~-- 328 (445)
T 2ovr_B 251 RVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK-- 328 (445)
T ss_dssp CEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--
T ss_pred EEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999988875
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCcceEEEeecc---cCceEEEEecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccc
Q 001039 1058 DRGIITGSSDGLLRFWENDDAGGIKCVKNVTI---HSSAILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMS 1134 (1179)
Q Consensus 1058 g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~---h~~~i~sis~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~ 1134 (1179)
++++++|+.||.|++||+.++ ..+..+.+ |...|.+++.+++++++|+.||.|++||+.++
T Consensus 329 ~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~------------- 392 (445)
T 2ovr_B 329 DNILVSGNADSTVKIWDIKTG---QCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTG------------- 392 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTC---CEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTC-------------
T ss_pred CCEEEEEeCCCeEEEEECCCC---cEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCC-------------
Confidence 779999999999999999884 45555554 88899999999999999999999999999843
Q ss_pred cceeeeec-----CCCcccEEEEEEcCCCCEEEEEeCCCc----EEEEECCCC
Q 001039 1135 GWQLYRTP-----QKTVAVVRCIASDLERKRICSGGRNGL----LRLWEATIN 1178 (1179)
Q Consensus 1135 ~~~~~~~~-----~~h~~~V~~v~fspdg~~Lasgs~Dg~----I~vWdv~tg 1178 (1179)
+..... .+|.+.|++++|+|+|.++|+|+.||+ |.|||++..
T Consensus 393 --~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 393 --EFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp --CEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred --ceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 222222 478899999999999999999999998 999999753
No 16
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=7.5e-37 Score=350.29 Aligned_cols=285 Identities=19% Similarity=0.317 Sum_probs=258.5
Q ss_pred eeEEEeccccccEEEE--ec----CCCEEEEEeCCCcEEEEECCCCeE--EEEeecCCCcEEEEEEe-CCCEEEEEEcCC
Q 001039 874 ELRATLKGHTRTVRAI--NS----DRGKVVSGSDDQSVLVWDKQTSQL--LEELKGHDAQVSCVRML-SGERVLTASHDG 944 (1179)
Q Consensus 874 ~~~~~l~~h~~~v~~~--s~----d~~~l~sgs~dg~I~iwd~~t~~~--~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg 944 (1179)
.+....++|.+.|.++ ++ ++.+|++|+.||+|++||+.+++. ...+.+|...|.+++++ ++..+++++.|+
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~ 102 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA 102 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred heeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCC
Confidence 3345678999999976 33 467999999999999999987754 45688999999999999 678999999999
Q ss_pred eEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcC--CEEEEE
Q 001039 945 TVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR--DTVITG 1022 (1179)
Q Consensus 945 ~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~--~~l~sg 1022 (1179)
+|++||+.+++.+..+..+...+.+++|+|+++++++|+.||.|++||+++++....+..+...+.+++|++ +++++|
T Consensus 103 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg 182 (321)
T 3ow8_A 103 HIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG 182 (321)
T ss_dssp EEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred cEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEE
Confidence 999999999999999988888999999999999999999999999999999999999999999999999965 599999
Q ss_pred eCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEE--ecC
Q 001039 1023 SDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSI--NAG 1100 (1179)
Q Consensus 1023 s~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~si--s~d 1100 (1179)
+.||.|++||+++++.+..+.+|...|++++|+|++++|++|+.||.|++||+.+ ......+.+|...|.++ +|+
T Consensus 183 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~---~~~~~~~~~h~~~v~~~~~sp~ 259 (321)
T 3ow8_A 183 AIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQH---ANLAGTLSGHASWVLNVAFCPD 259 (321)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTT---CCEEEEECCCSSCEEEEEECTT
T ss_pred cCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCC---cceeEEEcCCCCceEEEEECCC
Confidence 9999999999999999999999999999999999999999999999999999988 45677788999988665 789
Q ss_pred CCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001039 1101 DHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEAT 1176 (1179)
Q Consensus 1101 g~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~ 1176 (1179)
+.+|++|+.||+|++||+.+. +++..+.+|.+.|++++|+|+|++|++++.||+|++||..
T Consensus 260 ~~~l~s~s~D~~v~iwd~~~~---------------~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 260 DTHFVSSSSDKSVKVWDVGTR---------------TCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp SSEEEEEETTSCEEEEETTTT---------------EEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CCEEEEEeCCCcEEEEeCCCC---------------EEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 999999999999999999733 6777888999999999999999999999999999999974
No 17
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.8e-36 Score=350.07 Aligned_cols=282 Identities=24% Similarity=0.386 Sum_probs=257.2
Q ss_pred ceEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEE--EecCCCEE
Q 001039 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKV 896 (1179)
Q Consensus 819 ~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~--~s~d~~~l 896 (1179)
..+.+.||.+.|++++|+ +|+++|++|+.||+|++||.. .......+..|...|.+ ++|+++++
T Consensus 47 ~~~~l~gH~~~v~~~~~s------------~d~~~l~s~s~Dg~v~iWd~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l 112 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWG------------TDSRLLLSASQDGKLIIWDSY--TTNKVHAIPLRSSWVMTCAYAPSGNYV 112 (340)
T ss_dssp EEEEECCCSSCEEEEEEC------------TTSSEEEEEETTTEEEEEETT--TCCEEEEEECSSSCEEEEEECTTSSEE
T ss_pred hheeecCCCCceEEEEEC------------CCCCEEEEEeCCCcEEEEECC--CCCcceEeecCCccEEEEEECCCCCEE
Confidence 567899999999999998 899999999999999999976 45566778889988885 58999999
Q ss_pred EEEeCCCcEEEEECCCC----eEEEEeecCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEE
Q 001039 897 VSGSDDQSVLVWDKQTS----QLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEY 972 (1179)
Q Consensus 897 ~sgs~dg~I~iwd~~t~----~~~~~~~~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~ 972 (1179)
++|+.|+.|++||+.++ +....+.+|.+.|.++.|++++.+++++.||+|++||+++++.+..+.+|...|.+++|
T Consensus 113 ~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~ 192 (340)
T 1got_B 113 ACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSL 192 (340)
T ss_dssp EEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred EEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEE
Confidence 99999999999999875 46677889999999999998788999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcC--CEEEEEeCCCcEEEEEccCCeeeEEeec--CCcC
Q 001039 973 DDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR--DTVITGSDDWTARMWSISRGTCDAVLAC--HAGP 1048 (1179)
Q Consensus 973 sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~--h~~~ 1048 (1179)
+|+++++++|+.||.|++||+++++.+..+.+|...|.+++|++ +.+++|+.||+|++||+++++.+..+.. +...
T Consensus 193 ~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~ 272 (340)
T 1got_B 193 APDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG 272 (340)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSC
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccc
Confidence 99999999999999999999999999999999999999999965 5999999999999999999988777653 3357
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEE--ecCCCEEEEEECCCcEEEEe
Q 001039 1049 VQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFH 1117 (1179)
Q Consensus 1049 V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~si--s~dg~~lasgs~Dg~I~iwd 1117 (1179)
|++++|+|+|+++++|+.||.|++||+.+ ...+..+.+|...|.++ +++|.+|++|+.||+|++||
T Consensus 273 v~~~~~s~~g~~l~~g~~d~~i~vwd~~~---~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALK---ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTT---CCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred eEEEEECCCCCEEEEECCCCeEEEEEccc---CcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 99999999999999999999999999988 45667788999998766 78999999999999999997
No 18
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.2e-36 Score=349.39 Aligned_cols=281 Identities=21% Similarity=0.387 Sum_probs=256.1
Q ss_pred cccccCCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeeccc
Q 001039 762 AEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKR 839 (1179)
Q Consensus 762 ~~~~gh~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~ 839 (1179)
..+.||...|.+++|+|||+++++|+.| |++||+.++. .+..+.+|.+.|.+++|+
T Consensus 49 ~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~-------------------~~~~~~~~~~~v~~~~~s--- 106 (340)
T 1got_B 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN-------------------KVHAIPLRSSWVMTCAYA--- 106 (340)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC-------------------EEEEEECSSSCEEEEEEC---
T ss_pred eeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCC-------------------cceEeecCCccEEEEEEC---
Confidence 4467899999999999999999999999 9999998776 678899999999999998
Q ss_pred ceeccccccCCCCEEEEEeCCCcEEEEcCCCCC--ceeEEEeccccccEEEE--ecCCCEEEEEeCCCcEEEEECCCCeE
Q 001039 840 EVWDLVGDREDAGFFISGSTDCLVKIWDPSLRG--SELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQL 915 (1179)
Q Consensus 840 ~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~--~~~~~~l~~h~~~v~~~--s~d~~~l~sgs~dg~I~iwd~~t~~~ 915 (1179)
|++++|++|+.||.|++|++.... ......+.+|...|.++ +++ ..+++++.||+|++||+.+++.
T Consensus 107 ---------~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~l~s~s~d~~i~~wd~~~~~~ 176 (340)
T 1got_B 107 ---------PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQQ 176 (340)
T ss_dssp ---------TTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEET-TEEEEEETTSCEEEEETTTTEE
T ss_pred ---------CCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCC-CcEEEEECCCcEEEEECCCCcE
Confidence 899999999999999999987432 24556788999999865 455 4699999999999999999999
Q ss_pred EEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 001039 916 LEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIR 994 (1179)
Q Consensus 916 ~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~ 994 (1179)
+..+.+|...|.+++|+ ++..+++|+.||+|++||++++++...+.+|...|.+++|+|+++++++|+.||.|++||++
T Consensus 177 ~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~ 256 (340)
T 1got_B 177 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECC
Confidence 99999999999999999 67899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEeec--CCCCeEEEEEcC--CEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcE
Q 001039 995 AGRQMHKFLG--HTKWIRSIRMDR--DTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLL 1070 (1179)
Q Consensus 995 ~~~~~~~~~~--~~~~I~sl~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I 1070 (1179)
+++.+..+.. +...|.+++|++ .++++|+.||.|++||+.+++....+.+|.+.|++++|+|+|++|++|+.||.|
T Consensus 257 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i 336 (340)
T 1got_B 257 ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 336 (340)
T ss_dssp TTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCE
T ss_pred CCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccE
Confidence 9988777643 334799999964 599999999999999999999999999999999999999999999999999999
Q ss_pred EEEE
Q 001039 1071 RFWE 1074 (1179)
Q Consensus 1071 ~iwd 1074 (1179)
++||
T Consensus 337 ~iWd 340 (340)
T 1got_B 337 KIWN 340 (340)
T ss_dssp EEEC
T ss_pred EecC
Confidence 9996
No 19
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-36 Score=358.75 Aligned_cols=336 Identities=15% Similarity=0.233 Sum_probs=279.9
Q ss_pred EecccCceEEEEeecccceeccccccCCCC-EEEEEeCCCcEEEEcC----CCCCc----eeEEEecc----------cc
Q 001039 823 IRGHAGAITALHCVTKREVWDLVGDREDAG-FFISGSTDCLVKIWDP----SLRGS----ELRATLKG----------HT 883 (1179)
Q Consensus 823 l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~-~Lasgs~Dg~I~lWd~----~~~~~----~~~~~l~~----------h~ 883 (1179)
...|.+.|++++|+ |+++ +||+|+.||.|++||+ ..... .....+.. |.
T Consensus 41 ~~~~~~~v~~~~~s------------~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (425)
T 1r5m_A 41 EIVKLDNIVSSTWN------------PLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTT 108 (425)
T ss_dssp EEEECSCCSEEEEC------------SSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------C
T ss_pred eeeccCceEEEEEC------------CCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCC
Confidence 34566999999998 8899 9999999999999998 53221 02233333 67
Q ss_pred ccEEE--EecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEe
Q 001039 884 RTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATV 960 (1179)
Q Consensus 884 ~~v~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~ 960 (1179)
..|.+ +++++++|++|+.||.|++|| .+++.+..+.+|...|.+++|+ ++..+++++.||.|++||+.+++.+..+
T Consensus 109 ~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 187 (425)
T 1r5m_A 109 NQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHF 187 (425)
T ss_dssp BCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEE
T ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEe
Confidence 78875 589999999999999999999 7788899999999999999999 6889999999999999999999999988
Q ss_pred ccCCCc---------------EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEc--CCEEEEEe
Q 001039 961 GRCSSA---------------VLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMD--RDTVITGS 1023 (1179)
Q Consensus 961 ~~~~~~---------------v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~--~~~l~sgs 1023 (1179)
..+... +.+++|++++ .+++++.+|.|++||+++++.+..+.+|...|.+++|+ ++.+++++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 266 (425)
T 1r5m_A 188 ELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSAS 266 (425)
T ss_dssp CCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEE
T ss_pred eccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEc
Confidence 777666 8999999985 58889999999999999999999999999999999995 45899999
Q ss_pred CCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEE--ecCC
Q 001039 1024 DDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSI--NAGD 1101 (1179)
Q Consensus 1024 ~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~si--s~dg 1101 (1179)
.||.|++||+++++....+..|...|.+++|+|++ ++++++.||.|++||+.+ ...+..+..|...+.++ +|++
T Consensus 267 ~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~---~~~~~~~~~~~~~i~~~~~s~~~ 342 (425)
T 1r5m_A 267 DDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQ---NTLLALSIVDGVPIFAGRISQDG 342 (425)
T ss_dssp TTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTT---TEEEEEEECTTCCEEEEEECTTS
T ss_pred CCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCC---CcEeEecccCCccEEEEEEcCCC
Confidence 99999999999999999999999999999999999 999999999999999988 56777777888888665 7899
Q ss_pred CEEEEEECCCcEEEEeCCCCCcCcccCCCCc-----cccceeeeecCCCcc--cEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001039 1102 HWLGIGAADNSMSLFHRPQERLGGFSGTGSK-----MSGWQLYRTPQKTVA--VVRCIASDLERKRICSGGRNGLLRLWE 1174 (1179)
Q Consensus 1102 ~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~-----~~~~~~~~~~~~h~~--~V~~v~fspdg~~Lasgs~Dg~I~vWd 1174 (1179)
++|++|+.||.|++||+.+.........+.. ......+..+.+|.. .|++++|+|++++|++++.||.|++|+
T Consensus 343 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 422 (425)
T 1r5m_A 343 QKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVA 422 (425)
T ss_dssp SEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEE
T ss_pred CEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEe
Confidence 9999999999999999974321000000000 001126677788876 999999999999999999999999999
Q ss_pred CC
Q 001039 1175 AT 1176 (1179)
Q Consensus 1175 v~ 1176 (1179)
++
T Consensus 423 ~~ 424 (425)
T 1r5m_A 423 IP 424 (425)
T ss_dssp CC
T ss_pred ec
Confidence 86
No 20
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6e-36 Score=354.26 Aligned_cols=330 Identities=15% Similarity=0.222 Sum_probs=282.2
Q ss_pred cccccCCcceEEEEEccCCC-ceeeccCc--eEeeeC----CCCCCCCCCCCCCCCCCCcccccceEE----------Ee
Q 001039 762 AEASGIGRSWVQSMFSREAS-SRSHSFSR--VRKWTS----DAANENGTPRKQDSTAGGKKIQSNIRI----------IR 824 (1179)
Q Consensus 762 ~~~~gh~~~i~~~~fSpdg~-~las~~~d--I~vWd~----~~~~~~~~~~~~~~~~~~~~~~~~~~~----------l~ 824 (1179)
+....|...|.+++|+|||+ ++|+|+.| |++|++ .++...-. ...... ..
T Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~ 105 (425)
T 1r5m_A 39 LKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWK-------------LTIIAELRHPFALSASSG 105 (425)
T ss_dssp CEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEE-------------EEEEEEEECCCCCC----
T ss_pred eeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccc-------------cccccccccccccccccc
Confidence 33455668999999999999 99999988 999999 65541000 000112 23
Q ss_pred cccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEE--EecCCCEEEEEeCC
Q 001039 825 GHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDD 902 (1179)
Q Consensus 825 gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~--~s~d~~~l~sgs~d 902 (1179)
+|.+.|++++|+ |++++|++|+.||.|++||. .......+.+|...|.+ ++++++++++++.|
T Consensus 106 ~~~~~v~~~~~s------------~~~~~l~~~~~dg~i~i~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 170 (425)
T 1r5m_A 106 KTTNQVTCLAWS------------HDGNSIVTGVENGELRLWNK---TGALLNVLNFHRAPIVSVKWNKDGTHIISMDVE 170 (425)
T ss_dssp --CBCEEEEEEC------------TTSSEEEEEETTSCEEEEET---TSCEEEEECCCCSCEEEEEECTTSSEEEEEETT
T ss_pred CCCCceEEEEEc------------CCCCEEEEEeCCCeEEEEeC---CCCeeeeccCCCccEEEEEECCCCCEEEEEecC
Confidence 478899999998 89999999999999999993 35566788899999986 47899999999999
Q ss_pred CcEEEEECCCCeEEEEeecCCCc---------------EEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcE
Q 001039 903 QSVLVWDKQTSQLLEELKGHDAQ---------------VSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAV 967 (1179)
Q Consensus 903 g~I~iwd~~t~~~~~~~~~h~~~---------------V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v 967 (1179)
|.|++||+.+++.+..+..+... +.+++|+++..+++++.||.|++||+.+++.+..+..|...|
T Consensus 171 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i 250 (425)
T 1r5m_A 171 NVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPI 250 (425)
T ss_dssp CCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCE
T ss_pred CeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCce
Confidence 99999999999999999888777 899999988899999999999999999999999999999999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcCC-EEEEEeCCCcEEEEEccCCeeeEEeecCC
Q 001039 968 LCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD-TVITGSDDWTARMWSISRGTCDAVLACHA 1046 (1179)
Q Consensus 968 ~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~ 1046 (1179)
.+++|+|+++++++++.||.|++||+++++.+..+.+|...|.+++|+++ .+++++.||.|++||+++++.+..+..|.
T Consensus 251 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 330 (425)
T 1r5m_A 251 SVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDG 330 (425)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEECTT
T ss_pred EEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEecccCC
Confidence 99999999999999999999999999999999999999999999999765 99999999999999999999999999999
Q ss_pred cCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCC-----------------cceEEEeecccCc--eEEEE--ecCCCEEE
Q 001039 1047 GPVQCVEYSSSDRGIITGSSDGLLRFWENDDAG-----------------GIKCVKNVTIHSS--AILSI--NAGDHWLG 1105 (1179)
Q Consensus 1047 ~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~-----------------~~~~~~~~~~h~~--~i~si--s~dg~~la 1105 (1179)
..|++++|+|+++++++++.||.|++||+.+.. ....+..+.+|.. .|.++ ++++++|+
T Consensus 331 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 410 (425)
T 1r5m_A 331 VPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKIS 410 (425)
T ss_dssp CCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEE
T ss_pred ccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEE
Confidence 999999999999999999999999999998732 0116778888865 77655 78999999
Q ss_pred EEECCCcEEEEeCC
Q 001039 1106 IGAADNSMSLFHRP 1119 (1179)
Q Consensus 1106 sgs~Dg~I~iwd~~ 1119 (1179)
+|+.||.|++||++
T Consensus 411 ~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 411 VAYSLQEGSVVAIP 424 (425)
T ss_dssp EEESSSCCEEEECC
T ss_pred EEecCceEEEEeec
Confidence 99999999999985
No 21
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.2e-36 Score=354.08 Aligned_cols=314 Identities=13% Similarity=0.208 Sum_probs=229.3
Q ss_pred EEEccCCCceeeccCc-eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceeccccccCCCC
Q 001039 774 SMFSREASSRSHSFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAG 852 (1179)
Q Consensus 774 ~~fSpdg~~las~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~ 852 (1179)
+.+.+++.++.+.+.. ...|++.... ..+|++.|++++|+ |||+
T Consensus 11 ~d~g~~~~~~~~~g~~~~~~w~~p~~~-----------------------p~~H~~~V~~v~fS------------pDG~ 55 (357)
T 4g56_B 11 VDLGTENLYFQSNGSSKGSAWGRPVTA-----------------------PACMEVQIGAVRYR------------RDGA 55 (357)
T ss_dssp ----------------------------------------------------CCCSEEEEEEEC------------SSSC
T ss_pred CCCCccceEEecCCCccccccCCCCCC-----------------------cccccCCEEEEEEC------------CCCC
Confidence 3555666565555544 7777654322 23577778888877 7788
Q ss_pred EEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEEEeCCCcEEEEECCCCeEE----EEeecCCCcEEE
Q 001039 853 FFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLL----EELKGHDAQVSC 928 (1179)
Q Consensus 853 ~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~----~~~~~h~~~V~~ 928 (1179)
+||+|+.|+ +++|| |+|++|+..++... ....+|...|.+
T Consensus 56 ~las~s~d~-~~~wd-----------------------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~ 99 (357)
T 4g56_B 56 LLLAASSLS-SRTWG-----------------------------------GSIWVFKDPEGAPNESLCTAGVQTEAGVTD 99 (357)
T ss_dssp EEEEEECSS-SSSCC-----------------------------------EEEEEESSCC---CGGGCSEEEECSSCEEE
T ss_pred EEEEEcCCC-Ccccc-----------------------------------CeEEEEECCCCCcceeEecccCCCCCCEEE
Confidence 888887653 24443 44566665554332 233468888999
Q ss_pred EEEeCCCEEEEEEcCCeEEEEeCCCCeEEE----EeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeec
Q 001039 929 VRMLSGERVLTASHDGTVKMWDVRTDTCVA----TVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLG 1004 (1179)
Q Consensus 929 l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~----~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~ 1004 (1179)
++|++++.+++++.||+|++||+.+++... ...+|...|.+++|+|++++|++|+.||.|++||+++++.+..+.+
T Consensus 100 ~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~ 179 (357)
T 4g56_B 100 VAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNA 179 (357)
T ss_dssp EEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC
Confidence 999988889999999999999999887543 3347889999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEcC---CEEEEEeCCCcEEEEEccCCeeeEEee--cCCcCEEEEEEecC-CCEEEEEeCCCcEEEEEcCCC
Q 001039 1005 HTKWIRSIRMDR---DTVITGSDDWTARMWSISRGTCDAVLA--CHAGPVQCVEYSSS-DRGIITGSSDGLLRFWENDDA 1078 (1179)
Q Consensus 1005 ~~~~I~sl~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~--~h~~~V~~l~~spd-g~~l~sgs~Dg~I~iwd~~~~ 1078 (1179)
|...|.++++++ ..+++++.||+|++||+++++....+. .|...+++++|+|+ +.++++|+.|+.|++||+.+
T Consensus 180 h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~- 258 (357)
T 4g56_B 180 HSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN- 258 (357)
T ss_dssp CSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSC-
T ss_pred CCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCC-
Confidence 999999999954 379999999999999999988766554 56778999999997 56899999999999999998
Q ss_pred CcceEEEeecccCceEEEE--ecCC-CEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEc
Q 001039 1079 GGIKCVKNVTIHSSAILSI--NAGD-HWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASD 1155 (1179)
Q Consensus 1079 ~~~~~~~~~~~h~~~i~si--s~dg-~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fs 1155 (1179)
.+.+..+.+|...|.++ +|++ ++||+|+.||+|+|||+.++ +++.. .+|.+.|++|+|+
T Consensus 259 --~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~---------------~~~~~-~~H~~~V~~vafs 320 (357)
T 4g56_B 259 --PDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS---------------EVFRD-LSHRDFVTGVAWS 320 (357)
T ss_dssp --GGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC---------------EEEEE-CCCSSCEEEEEEC
T ss_pred --CcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC---------------cEeEE-CCCCCCEEEEEEe
Confidence 45666778898888766 6776 68999999999999998733 34443 4799999999999
Q ss_pred C-CCCEEEEEeCCCcEEEEECCC
Q 001039 1156 L-ERKRICSGGRNGLLRLWEATI 1177 (1179)
Q Consensus 1156 p-dg~~Lasgs~Dg~I~vWdv~t 1177 (1179)
| |+++|||||.||+|++|++.+
T Consensus 321 P~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 321 PLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp SSSTTEEEEEETTSCEEEEECC-
T ss_pred CCCCCEEEEEcCCCeEEEEECCC
Confidence 8 899999999999999999965
No 22
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.5e-35 Score=344.37 Aligned_cols=283 Identities=21% Similarity=0.355 Sum_probs=252.3
Q ss_pred eeEEEeccccccEEEE--ecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEe
Q 001039 874 ELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWD 950 (1179)
Q Consensus 874 ~~~~~l~~h~~~v~~~--s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd 950 (1179)
.....+.+|...|.++ ++++.+|++|+.||+|++||..+++....+..|...|.+++|+ ++..+++|+.|+.+++|+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence 4457889999999964 8999999999999999999999999999999999999999999 688999999999999999
Q ss_pred CCCC------eEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEc----CCEEE
Q 001039 951 VRTD------TCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMD----RDTVI 1020 (1179)
Q Consensus 951 ~~~~------~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~----~~~l~ 1020 (1179)
+... .....+..|...|.+++|+|++..+++++.||.|++||+++++.+..+.+|...|.++++. ++.++
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~ 214 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFV 214 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEE
T ss_pred EeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEE
Confidence 8654 2345666899999999999999999999999999999999999999999999999999984 35999
Q ss_pred EEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeeccc--CceE--EE
Q 001039 1021 TGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIH--SSAI--LS 1096 (1179)
Q Consensus 1021 sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h--~~~i--~s 1096 (1179)
+|+.||+|++||+++++++..+.+|...|++++|+|+++++++|+.||+|++||++.. ..+..+..+ ...+ .+
T Consensus 215 sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~---~~~~~~~~~~~~~~~~~~~ 291 (354)
T 2pbi_B 215 SGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD---REVAIYSKESIIFGASSVD 291 (354)
T ss_dssp EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCEEEEE
T ss_pred EEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC---cEEEEEcCCCcccceeEEE
Confidence 9999999999999999999999999999999999999999999999999999999873 334333332 2233 55
Q ss_pred EecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001039 1097 INAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWE 1174 (1179)
Q Consensus 1097 is~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWd 1174 (1179)
++++|+++++|+.|++|++||+.+ + ..+..+.+|.+.|++++|+|||++|++|+.||+|++|+
T Consensus 292 ~s~~g~~l~~g~~d~~i~vwd~~~---------~------~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 292 FSLSGRLLFAGYNDYTINVWDVLK---------G------SRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTT---------C------SEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EeCCCCEEEEEECCCcEEEEECCC---------C------ceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 689999999999999999999873 3 44566779999999999999999999999999999996
No 23
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.2e-35 Score=345.16 Aligned_cols=283 Identities=21% Similarity=0.381 Sum_probs=256.6
Q ss_pred CcccccCCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecc
Q 001039 761 PAEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTK 838 (1179)
Q Consensus 761 ~~~~~gh~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~ 838 (1179)
...+.||...|.+++|+|||+++++|+.| |++||..++. ..+.+..|...|.+++|+
T Consensus 57 ~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~-------------------~~~~~~~~~~~v~~~~~s-- 115 (354)
T 2pbi_B 57 RRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTN-------------------KEHAVTMPCTWVMACAYA-- 115 (354)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-------------------EEEEEECSSSCCCEEEEC--
T ss_pred EEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCC-------------------cceEEecCCCCEEEEEEC--
Confidence 34568999999999999999999999999 9999988766 677888999999999998
Q ss_pred cceeccccccCCCCEEEEEeCCCcEEEEcCCCCC----ceeEEEeccccccEEE--EecCCCEEEEEeCCCcEEEEECCC
Q 001039 839 REVWDLVGDREDAGFFISGSTDCLVKIWDPSLRG----SELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQT 912 (1179)
Q Consensus 839 ~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~----~~~~~~l~~h~~~v~~--~s~d~~~l~sgs~dg~I~iwd~~t 912 (1179)
|++.++++|+.|+.+++|++.... ......+.+|...|.+ +++++..+++|+.||+|++||+.+
T Consensus 116 ----------p~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~ 185 (354)
T 2pbi_B 116 ----------PSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVES 185 (354)
T ss_dssp ----------TTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred ----------CCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Confidence 899999999999999999975321 2345677889999885 578999999999999999999999
Q ss_pred CeEEEEeecCCCcEEEEEEe---CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEE
Q 001039 913 SQLLEELKGHDAQVSCVRML---SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVAN 989 (1179)
Q Consensus 913 ~~~~~~~~~h~~~V~~l~~s---~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~ 989 (1179)
++.+..+.+|...|.+++++ +++.+++|+.||+|++||+++++++..+..|...|.+++|+|+++.+++|+.|+.|+
T Consensus 186 ~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~ 265 (354)
T 2pbi_B 186 GQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCR 265 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEE
Confidence 99999999999999999997 357999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCceeEEeecC--CCCeEEEEEc--CCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEe
Q 001039 990 IWDIRAGRQMHKFLGH--TKWIRSIRMD--RDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGS 1065 (1179)
Q Consensus 990 iwD~~~~~~~~~~~~~--~~~I~sl~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs 1065 (1179)
+||+++++.+..+..+ ...+.+++|+ +.++++|+.|++|++||+.+++.+..+.+|.+.|++++|+|+|++|++|+
T Consensus 266 lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs 345 (354)
T 2pbi_B 266 LYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGS 345 (354)
T ss_dssp EEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEE
T ss_pred EEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEc
Confidence 9999998887776543 3478889985 55999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEE
Q 001039 1066 SDGLLRFWE 1074 (1179)
Q Consensus 1066 ~Dg~I~iwd 1074 (1179)
.||+|++|+
T Consensus 346 ~D~~v~vW~ 354 (354)
T 2pbi_B 346 WDHTLRVWA 354 (354)
T ss_dssp TTSEEEEEC
T ss_pred CCCCEEecC
Confidence 999999996
No 24
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4.2e-36 Score=388.37 Aligned_cols=382 Identities=17% Similarity=0.255 Sum_probs=314.7
Q ss_pred cccccCCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeeccc
Q 001039 762 AEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKR 839 (1179)
Q Consensus 762 ~~~~gh~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~ 839 (1179)
....+|...|.+++|||||+++|+++.+ |++||+.++. .++.+.+|.++|++++|+
T Consensus 7 ~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~-------------------~~~~~~~~~~~v~~~~~s--- 64 (814)
T 3mkq_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV-------------------EVRSIQVTETPVRAGKFI--- 64 (814)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-------------------EEEEEECCSSCEEEEEEE---
T ss_pred eeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCc-------------------eEEEEecCCCcEEEEEEe---
Confidence 3457899999999999999999999887 9999998877 788899999999999998
Q ss_pred ceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEE--EecCCCEEEEEeCCCcEEEEECCCC-eEE
Q 001039 840 EVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTS-QLL 916 (1179)
Q Consensus 840 ~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~--~s~d~~~l~sgs~dg~I~iwd~~t~-~~~ 916 (1179)
|++++|++|+.||.|++||+. +......+.+|...|.+ +++++.++++|+.||+|++||+.++ ...
T Consensus 65 ---------~~~~~l~~~~~dg~i~vw~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~ 133 (814)
T 3mkq_A 65 ---------ARKNWIIVGSDDFRIRVFNYN--TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE 133 (814)
T ss_dssp ---------GGGTEEEEEETTSEEEEEETT--TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEE
T ss_pred ---------CCCCEEEEEeCCCeEEEEECC--CCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEE
Confidence 799999999999999999976 55667788999999985 5899999999999999999999987 777
Q ss_pred EEeecCCCcEEEEEEeC--CCEEEEEEcCCeEEEEeCCCCeEEEEeccCC-CcEEEEEEcC--CCCEEEEEeCCCeEEEE
Q 001039 917 EELKGHDAQVSCVRMLS--GERVLTASHDGTVKMWDVRTDTCVATVGRCS-SAVLCMEYDD--STGILAAGGRDAVANIW 991 (1179)
Q Consensus 917 ~~~~~h~~~V~~l~~s~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~-~~v~~l~~sp--~~~~l~sgs~dg~I~iw 991 (1179)
..+.+|...|.+++|++ +..+++++.||+|++||+.+++....+..+. ..+.+++|+| ++.++++|+.||.|++|
T Consensus 134 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~ 213 (814)
T 3mkq_A 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213 (814)
T ss_dssp EEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEE
T ss_pred EEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 88899999999999995 6789999999999999999888777765544 8899999999 99999999999999999
Q ss_pred eCCCCceeEEeecCCCCeEEEEEcC--CEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCC--EEEEEeCC
Q 001039 992 DIRAGRQMHKFLGHTKWIRSIRMDR--DTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDR--GIITGSSD 1067 (1179)
Q Consensus 992 D~~~~~~~~~~~~~~~~I~sl~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~--~l~sgs~D 1067 (1179)
|+++++.+..+.+|...|.+++|++ +.+++++.||.|++||+.+++....+..|...+++++|+|+|+ +++++ .+
T Consensus 214 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~ 292 (814)
T 3mkq_A 214 DYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG-FD 292 (814)
T ss_dssp ETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEE-ET
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEE-eC
Confidence 9999999999999999999999965 4899999999999999999999999999999999999999987 45555 56
Q ss_pred CcEEEEEcCCCCcce-------EEE---------------------------------eecccCc--eEEEEecCCCEEE
Q 001039 1068 GLLRFWENDDAGGIK-------CVK---------------------------------NVTIHSS--AILSINAGDHWLG 1105 (1179)
Q Consensus 1068 g~I~iwd~~~~~~~~-------~~~---------------------------------~~~~h~~--~i~sis~dg~~la 1105 (1179)
+.+.+|++....... .+. ....+.. ...+++|+|++++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la 372 (814)
T 3mkq_A 293 NGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVT 372 (814)
T ss_dssp TEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEE
T ss_pred CCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEE
Confidence 668899876532111 111 0111222 3356689999999
Q ss_pred EEECCCcEEEEeCCCCCc--------CcccCCCCccc------cceeeeecCCCcccEEEEEEcCCC---CEEEEEeCCC
Q 001039 1106 IGAADNSMSLFHRPQERL--------GGFSGTGSKMS------GWQLYRTPQKTVAVVRCIASDLER---KRICSGGRNG 1168 (1179)
Q Consensus 1106 sgs~Dg~I~iwd~~~~~~--------~~~~~~g~~~~------~~~~~~~~~~h~~~V~~v~fspdg---~~Lasgs~Dg 1168 (1179)
+++ ||.+.+|++..... ..++++|..+. .........+|...+.+++|+||| +.|++++.||
T Consensus 373 ~~~-~~~~~i~~~~~~~~~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~ 451 (814)
T 3mkq_A 373 VVG-DGEYVIYTALAWRNKAFGKCQDFVWGPDSNSYALIDETGQIKYYKNFKEVTSWSVPMHSAIDRLFSGALLGVKSDG 451 (814)
T ss_dssp EEE-TTEEEEEETTTTEEEEEEECSEEEECTTSSCEEEECTTCCEEEEETTEECTTCCCCCSSCCCEEECSSSEEEEETT
T ss_pred Eec-CCEEEEEECccccccCCCceEEEEEeCCCCeEEEEeCCCcEEEEECCCCccceEEcCCcCccceecceEEEEecCC
Confidence 998 89999999764321 11222232111 123334556777788888888888 6788888888
Q ss_pred cEEEEECCCC
Q 001039 1169 LLRLWEATIN 1178 (1179)
Q Consensus 1169 ~I~vWdv~tg 1178 (1179)
+|++||+.+|
T Consensus 452 ~v~~~d~~~~ 461 (814)
T 3mkq_A 452 FVYFFDWDNG 461 (814)
T ss_dssp EEEEECTTTC
T ss_pred EEEEEECCcC
Confidence 8888888776
No 25
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.6e-35 Score=334.62 Aligned_cols=283 Identities=18% Similarity=0.358 Sum_probs=251.5
Q ss_pred ceEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEE--EecCCCEE
Q 001039 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKV 896 (1179)
Q Consensus 819 ~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~--~s~d~~~l 896 (1179)
..+++.+|.+.|++++|+ |++++|++|+.||+|++||+. .......+.+|...|.+ ++++++++
T Consensus 5 ~~~~~~~h~~~V~~~~fs------------p~~~~l~s~~~dg~v~lWd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l 70 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFH------------PTEPWVLTTLYSGRVELWNYE--TQVEVRSIQVTETPVRAGKFIARKNWI 70 (304)
T ss_dssp CEEEEEEECSCEEEEEEC------------SSSSEEEEEETTSEEEEEETT--TTEEEEEEECCSSCEEEEEEEGGGTEE
T ss_pred eEEeecCCCCceEEEEEC------------CCCCEEEEEcCCCcEEEEECC--CCceeEEeeccCCcEEEEEEeCCCCEE
Confidence 567899999999999998 899999999999999999976 55667888999998885 58999999
Q ss_pred EEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCC-eEEEEeccCCCcEEEEEEcC
Q 001039 897 VSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTD-TCVATVGRCSSAVLCMEYDD 974 (1179)
Q Consensus 897 ~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~-~~~~~~~~~~~~v~~l~~sp 974 (1179)
++|+.|++|++||+.+++.+..+.+|...|.+++|+ ++.++++|+.||+|++||++++ .....+.+|...|.+++|+|
T Consensus 71 ~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p 150 (304)
T 2ynn_A 71 IVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNP 150 (304)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECT
T ss_pred EEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECC
Confidence 999999999999999999999999999999999999 6789999999999999999887 55677889999999999999
Q ss_pred -CCCEEEEEeCCCeEEEEeCCCCceeEEee-cCCCCeEEEEEc----CCEEEEEeCCCcEEEEEccCCeeeEEeecCCcC
Q 001039 975 -STGILAAGGRDAVANIWDIRAGRQMHKFL-GHTKWIRSIRMD----RDTVITGSDDWTARMWSISRGTCDAVLACHAGP 1048 (1179)
Q Consensus 975 -~~~~l~sgs~dg~I~iwD~~~~~~~~~~~-~~~~~I~sl~~~----~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~ 1048 (1179)
++..+++|+.||.|++||++++.....+. +|...+..+.+. +.++++|+.||+|++||+++++++..+.+|...
T Consensus 151 ~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~ 230 (304)
T 2ynn_A 151 KDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSN 230 (304)
T ss_dssp TCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCC
Confidence 67899999999999999999887766654 566788888884 358999999999999999999999999999999
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEE--ecCCC--EEEEEECCCcEEEEeCC
Q 001039 1049 VQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSI--NAGDH--WLGIGAADNSMSLFHRP 1119 (1179)
Q Consensus 1049 V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~si--s~dg~--~lasgs~Dg~I~iwd~~ 1119 (1179)
|++++|+|++++|++|+.||+|++||..+ .+....+..|...+.++ +|++. ++++|+.| .+.+|++.
T Consensus 231 v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~-g~~~~~~~ 301 (304)
T 2ynn_A 231 VSFAVFHPTLPIIISGSEDGTLKIWNSST---YKVEKTLNVGLERSWCIATHPTGRKNYIASGFDN-GFTVLSLG 301 (304)
T ss_dssp EEEEEECSSSSEEEEEETTSCEEEEETTT---CCEEEEECCSSSSEEEEEECTTCGGGCEEEEETT-EEEEEECC
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEECCC---CceeeeccCCCccEEEEEECCCCCceEEEEecCC-ceEEEEec
Confidence 99999999999999999999999999988 56777778888887766 56664 57777655 57788775
No 26
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=3.5e-35 Score=336.05 Aligned_cols=293 Identities=20% Similarity=0.425 Sum_probs=248.9
Q ss_pred ceeEEEeccccccEEEE--ecC-CCEEEEEeCCCcEEEEECCC-----CeEEEEeecCCCcEEEEEEe-CCCEEEEEEcC
Q 001039 873 SELRATLKGHTRTVRAI--NSD-RGKVVSGSDDQSVLVWDKQT-----SQLLEELKGHDAQVSCVRML-SGERVLTASHD 943 (1179)
Q Consensus 873 ~~~~~~l~~h~~~v~~~--s~d-~~~l~sgs~dg~I~iwd~~t-----~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~d 943 (1179)
..+..++.+|.+.|.++ +++ +++|++|+.||+|++||+.+ +..+..+.+|...|.+++|+ ++.++++|+.|
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D 86 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWD 86 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCC
Confidence 34557899999999975 565 48999999999999999864 35677899999999999999 78899999999
Q ss_pred CeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcCC------
Q 001039 944 GTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD------ 1017 (1179)
Q Consensus 944 g~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~------ 1017 (1179)
++|++||+.+++.+..+.+|...|.+++|+|++.++++|+.|+.|++||++ ++.+..+.+|...|.++.+.+.
T Consensus 87 ~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 165 (319)
T 3frx_A 87 KTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDD 165 (319)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------
T ss_pred CEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCC
Confidence 999999999999999999999999999999999999999999999999996 5677888899999999999653
Q ss_pred --EEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEE
Q 001039 1018 --TVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAIL 1095 (1179)
Q Consensus 1018 --~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~ 1095 (1179)
.+++++.|++|++||+++++....+.+|...|++++|+|+|++|++|+.||.|++||+.+ .+.+..+..+ ..+.
T Consensus 166 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~-~~v~ 241 (319)
T 3frx_A 166 SVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA---KKAMYTLSAQ-DEVF 241 (319)
T ss_dssp CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTT---TEEEEEEECC-SCEE
T ss_pred ccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC---CcEEEEecCC-CcEE
Confidence 799999999999999999999999999999999999999999999999999999999998 4555555544 3454
Q ss_pred --EEecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 001039 1096 --SINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLW 1173 (1179)
Q Consensus 1096 --sis~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vW 1173 (1179)
+++|++.++++++.+ .+++|++........... ........|...+.+++|+|||++|++|+.||+|++|
T Consensus 242 ~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~-------~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vW 313 (319)
T 3frx_A 242 SLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRP-------EFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313 (319)
T ss_dssp EEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECC-------CCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCc-------cccccccCcCcceeEEEECCCCCEEEEeecCceEEEE
Confidence 458999999988765 599999874321000000 0001123466789999999999999999999999999
Q ss_pred ECCCC
Q 001039 1174 EATIN 1178 (1179)
Q Consensus 1174 dv~tg 1178 (1179)
|+.|+
T Consensus 314 d~~t~ 318 (319)
T 3frx_A 314 QVMTA 318 (319)
T ss_dssp EEEEC
T ss_pred EEeec
Confidence 99876
No 27
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=4.6e-35 Score=351.21 Aligned_cols=319 Identities=26% Similarity=0.508 Sum_probs=286.6
Q ss_pred CcccccCCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecc
Q 001039 761 PAEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTK 838 (1179)
Q Consensus 761 ~~~~~gh~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~ 838 (1179)
.....+|...++. +++++|+++++|+.| |++||+.++. .++.+.+|.+.|++++|+
T Consensus 111 ~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~-------------------~~~~~~~h~~~v~~~~~~-- 168 (445)
T 2ovr_B 111 PKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGK-------------------CLRTLVGHTGGVWSSQMR-- 168 (445)
T ss_dssp CEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCC-------------------EEEECCCCSSCEEEEEEE--
T ss_pred eEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCc-------------------EEEEEcCCCCCEEEEEec--
Confidence 3446788877655 477789999999999 9999999877 788899999999999985
Q ss_pred cceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 001039 839 REVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEE 918 (1179)
Q Consensus 839 ~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~ 918 (1179)
++++++|+.||+|++||+. ..+....+.+|...|.++..+++.+++|+.||+|++||+.+++.+..
T Consensus 169 ------------~~~l~s~~~dg~i~vwd~~--~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~ 234 (445)
T 2ovr_B 169 ------------DNIIISGSTDRTLKVWNAE--TGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHV 234 (445)
T ss_dssp ------------TTEEEEEETTSCEEEEETT--TTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEE
T ss_pred ------------CCEEEEEeCCCeEEEEECC--cCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEE
Confidence 6799999999999999976 55677889999999999988999999999999999999999999999
Q ss_pred eecCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Q 001039 919 LKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQ 998 (1179)
Q Consensus 919 ~~~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~ 998 (1179)
+.+|...|.++.+ +++.+++|+.||.|++||+++++.+..+..|...|.++++ ++..+++|+.||.|++||+++++.
T Consensus 235 ~~~~~~~v~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~ 311 (445)
T 2ovr_B 235 LMGHVAAVRCVQY-DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNC 311 (445)
T ss_dssp EECCSSCEEEEEE-CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCE
T ss_pred EcCCcccEEEEEE-CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCE
Confidence 9999999999999 7889999999999999999999999999999999999999 788999999999999999999999
Q ss_pred eEEeecCCCCeEEEEEcCCEEEEEeCCCcEEEEEccCCeeeEEeec---CCcCEEEEEEecCCCEEEEEeCCCcEEEEEc
Q 001039 999 MHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLAC---HAGPVQCVEYSSSDRGIITGSSDGLLRFWEN 1075 (1179)
Q Consensus 999 ~~~~~~~~~~I~sl~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~ 1075 (1179)
+..+.+|...+.++.++++.+++|+.||.|++||+++++.+..+.. |...|++++|+ ++++++|+.||.|++||+
T Consensus 312 ~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~ 389 (445)
T 2ovr_B 312 IHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDL 389 (445)
T ss_dssp EEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEET
T ss_pred EEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEEC
Confidence 9999999999999999999999999999999999999999999886 88899999995 689999999999999999
Q ss_pred CCCCcceEEEee--cccCceEEEE--ecCCCEEEEEECCCc----EEEEeCCC
Q 001039 1076 DDAGGIKCVKNV--TIHSSAILSI--NAGDHWLGIGAADNS----MSLFHRPQ 1120 (1179)
Q Consensus 1076 ~~~~~~~~~~~~--~~h~~~i~si--s~dg~~lasgs~Dg~----I~iwd~~~ 1120 (1179)
.+++....+... .+|...|.++ +|++.++++|+.||+ |.+||...
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 390 KTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp TTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 985433333222 4677778665 789999999999998 99999873
No 28
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=4.3e-35 Score=332.83 Aligned_cols=286 Identities=17% Similarity=0.316 Sum_probs=254.0
Q ss_pred eeEEEeccccccEEE--EecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEe
Q 001039 874 ELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWD 950 (1179)
Q Consensus 874 ~~~~~l~~h~~~v~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd 950 (1179)
....++.+|...|.+ ++|+++++++|+.||+|++||+.+++.+..+..|...|.+++|+ +++.+++|+.|++|++||
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence 345788999999996 58999999999999999999999999999999999999999999 788999999999999999
Q ss_pred CCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-ceeEEeecCCCCeEEEEEcC---CEEEEEeCCC
Q 001039 951 VRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAG-RQMHKFLGHTKWIRSIRMDR---DTVITGSDDW 1026 (1179)
Q Consensus 951 ~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~-~~~~~~~~~~~~I~sl~~~~---~~l~sgs~dg 1026 (1179)
+.+++.+..+.+|...|.+++|+|+++++++|+.||.|++||++++ .....+.+|...|.+++|++ ..+++|+.||
T Consensus 84 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~ 163 (304)
T 2ynn_A 84 YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR 163 (304)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTS
T ss_pred CCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCC
Confidence 9999999999999999999999999999999999999999999987 45567889999999999965 4899999999
Q ss_pred cEEEEEccCCeeeEEee-cCCcCEEEEEEec--CCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEE--ecCC
Q 001039 1027 TARMWSISRGTCDAVLA-CHAGPVQCVEYSS--SDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSI--NAGD 1101 (1179)
Q Consensus 1027 ~I~iwd~~~~~~~~~~~-~h~~~V~~l~~sp--dg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~si--s~dg 1101 (1179)
+|++||++++.....+. +|...+..++|+| +++++++|+.||+|++||+.+ ..++..+.+|...|.++ +|++
T Consensus 164 ~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~---~~~~~~~~~h~~~v~~~~~~p~~ 240 (304)
T 2ynn_A 164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT---KSCVATLEGHMSNVSFAVFHPTL 240 (304)
T ss_dssp EEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTT---TEEEEEEECCSSCEEEEEECSSS
T ss_pred eEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCC---CccceeeCCCCCCEEEEEECCCC
Confidence 99999998887666654 5668899999987 788999999999999999998 57888889999988655 7999
Q ss_pred CEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCC--EEEEEeCCCcEEEEECCCC
Q 001039 1102 HWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERK--RICSGGRNGLLRLWEATIN 1178 (1179)
Q Consensus 1102 ~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~--~Lasgs~Dg~I~vWdv~tg 1178 (1179)
.+|++|+.||+|++||+.+. ++...+..|...+++++|+|++. ++|+|+.|| +.+|++.+.
T Consensus 241 ~~l~s~s~Dg~i~iWd~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~~ 303 (304)
T 2ynn_A 241 PIIISGSEDGTLKIWNSSTY---------------KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGND 303 (304)
T ss_dssp SEEEEEETTSCEEEEETTTC---------------CEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC--
T ss_pred CEEEEEcCCCeEEEEECCCC---------------ceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEeccC
Confidence 99999999999999998733 56677788999999999999885 577777655 778887653
No 29
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.3e-35 Score=339.30 Aligned_cols=301 Identities=20% Similarity=0.324 Sum_probs=250.0
Q ss_pred CceeEEEeccccc-cEE--EEecCCCEEEEEeCCCcEEEEECCCCeEEE---EeecCCCcEEEEEEe-CCCEEEEEEcCC
Q 001039 872 GSELRATLKGHTR-TVR--AINSDRGKVVSGSDDQSVLVWDKQTSQLLE---ELKGHDAQVSCVRML-SGERVLTASHDG 944 (1179)
Q Consensus 872 ~~~~~~~l~~h~~-~v~--~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~---~~~~h~~~V~~l~~s-~~~~l~sgs~dg 944 (1179)
...++..+.+|.. .|. +++|+|++|++|+.||+|++||+.+++... ...+|...|.+++|+ ++++|++|+.|+
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~ 83 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA 83 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC
Confidence 3456678899987 676 569999999999999999999998886432 236899999999999 688999999999
Q ss_pred eEEEEeCCCC--eEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc---eeEEeecCCCCeEEEEEcC--C
Q 001039 945 TVKMWDVRTD--TCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGR---QMHKFLGHTKWIRSIRMDR--D 1017 (1179)
Q Consensus 945 ~I~iwd~~~~--~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~---~~~~~~~~~~~I~sl~~~~--~ 1017 (1179)
+|++||..++ +++..+.+|...|.+++|+|++++|++|+.|+.|++||++++. .+..+.+|...|.+++|++ +
T Consensus 84 ~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~ 163 (345)
T 3fm0_A 84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE 163 (345)
T ss_dssp CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS
T ss_pred cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC
Confidence 9999998876 4577888999999999999999999999999999999998764 4567789999999999965 5
Q ss_pred EEEEEeCCCcEEEEEccCCe--eeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCC------------cceE
Q 001039 1018 TVITGSDDWTARMWSISRGT--CDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAG------------GIKC 1083 (1179)
Q Consensus 1018 ~l~sgs~dg~I~iwd~~~~~--~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~------------~~~~ 1083 (1179)
++++|+.|++|++||.++++ +...+.+|...|++++|+|+|++|++|+.||+|++||....+ ...+
T Consensus 164 ~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~ 243 (345)
T 3fm0_A 164 LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKC 243 (345)
T ss_dssp CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEE
T ss_pred EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccce
Confidence 89999999999999998875 456788999999999999999999999999999999974322 1234
Q ss_pred EEeecc-cCceEEEE--ecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccce-eeeecCCCcccEEEEEEcCCC-
Q 001039 1084 VKNVTI-HSSAILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQ-LYRTPQKTVAVVRCIASDLER- 1158 (1179)
Q Consensus 1084 ~~~~~~-h~~~i~si--s~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~-~~~~~~~h~~~V~~v~fspdg- 1158 (1179)
+..+.+ |...|.++ ++++..+++++.|+.|++|+...... ....... ......+|...|++++|+|++
T Consensus 244 ~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~-------~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~ 316 (345)
T 3fm0_A 244 ICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSD-------PQQPTFSLTAHLHQAHSQDVNCVAWNPKEP 316 (345)
T ss_dssp EEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSC-------TTSCCEEEEEEETTSSSSCEEEEEECSSST
T ss_pred eEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCC-------cceeeEEEEeeecccccCcEeEeEEeCCCc
Confidence 445554 77778666 68999999999999999999864311 1111112 223456899999999999998
Q ss_pred CEEEEEeCCCcEEEEECCCCC
Q 001039 1159 KRICSGGRNGLLRLWEATINI 1179 (1179)
Q Consensus 1159 ~~Lasgs~Dg~I~vWdv~tg~ 1179 (1179)
.+|||||.||+|++|++.+++
T Consensus 317 ~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 317 GLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp TEEEEEETTSCEEEEEECC--
T ss_pred eEEEEcCCCCcEEEEEecCCC
Confidence 599999999999999998763
No 30
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.9e-35 Score=341.80 Aligned_cols=291 Identities=15% Similarity=0.182 Sum_probs=238.3
Q ss_pred ccCCcceEEEEEccCCCceeeccCc-eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceec
Q 001039 765 SGIGRSWVQSMFSREASSRSHSFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWD 843 (1179)
Q Consensus 765 ~gh~~~i~~~~fSpdg~~las~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~ 843 (1179)
..|.+.+.+++|||||+++++++++ +|+||........ .. .............|...|++++|+
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~-------~~-~~~~~~~~~~~~~~~~~v~~~~~s------- 91 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKD-------PC-AAPNEGFCSAGVQTEAGVADLTWV------- 91 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESS-------GG-GTTCGGGCSEEEEESSCEEEEEEE-------
T ss_pred ccccCCEEEEEECCCCCEEEEEeCCceEEeeceeeeecc-------cc-ccCCcceeeeeeccCCCEEEEEEe-------
Confidence 4566778889999999999998876 9999854221000 00 000111223345578899999998
Q ss_pred cccccCCCCEEEEEeCCCcEEEEcCCCCCce--eEEEeccccccEEE--EecCCCEEEEEeCCCcEEEEECCCCeEEEEe
Q 001039 844 LVGDREDAGFFISGSTDCLVKIWDPSLRGSE--LRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLLEEL 919 (1179)
Q Consensus 844 ~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~--~~~~l~~h~~~v~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~ 919 (1179)
+| +.|++|+.||+|+|||+...... ......+|...|.+ +++++++|++|+.||+|++||+.+++++..+
T Consensus 92 -----~d-~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~ 165 (344)
T 4gqb_B 92 -----GE-RGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSY 165 (344)
T ss_dssp -----TT-TEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred -----CC-CeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 66 57889999999999998743322 22345689999986 5899999999999999999999999999999
Q ss_pred ecCCCcEEEEEEe-CC-CEEEEEEcCCeEEEEeCCCCeEEEEec--cCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCC
Q 001039 920 KGHDAQVSCVRML-SG-ERVLTASHDGTVKMWDVRTDTCVATVG--RCSSAVLCMEYDD-STGILAAGGRDAVANIWDIR 994 (1179)
Q Consensus 920 ~~h~~~V~~l~~s-~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~--~~~~~v~~l~~sp-~~~~l~sgs~dg~I~iwD~~ 994 (1179)
.+|...|.+++|+ ++ ..+++|+.||+|++||+++++....+. .+...+.+++|+| +++++++|+.||.|++||++
T Consensus 166 ~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~ 245 (344)
T 4gqb_B 166 RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTK 245 (344)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESC
T ss_pred cCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECC
Confidence 9999999999998 44 578999999999999999999888774 3556799999999 46788999999999999999
Q ss_pred CCceeEEeecCCCCeEEEEEcC---CEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCC-EEEEEeCCCcE
Q 001039 995 AGRQMHKFLGHTKWIRSIRMDR---DTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDR-GIITGSSDGLL 1070 (1179)
Q Consensus 995 ~~~~~~~~~~~~~~I~sl~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~-~l~sgs~Dg~I 1070 (1179)
+++++..+.+|...|++++|++ .+|++|+.||+|++||+++++.. .+.+|.+.|++++|+|+++ ++++|+.||+|
T Consensus 246 ~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v 324 (344)
T 4gqb_B 246 STSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQV 324 (344)
T ss_dssp C--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCE
T ss_pred CCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeE
Confidence 9999999999999999999965 37999999999999999988765 4678999999999999986 56789999999
Q ss_pred EEEEcCC
Q 001039 1071 RFWENDD 1077 (1179)
Q Consensus 1071 ~iwd~~~ 1077 (1179)
++|++.+
T Consensus 325 ~~w~v~~ 331 (344)
T 4gqb_B 325 VHHVVPT 331 (344)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 9999987
No 31
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.9e-36 Score=354.07 Aligned_cols=302 Identities=19% Similarity=0.338 Sum_probs=256.4
Q ss_pred CcEEEEcCCCCCceeEEEeccccccEEE--EecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEE
Q 001039 861 CLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERV 937 (1179)
Q Consensus 861 g~I~lWd~~~~~~~~~~~l~~h~~~v~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l 937 (1179)
..+..|+.. .......+.+|.+.|.+ ++|++++|++|+.||+|++||..+++....+..|...|.+++|+ ++.++
T Consensus 46 ~~~~~~~~~--~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l 123 (380)
T 3iz6_a 46 RTAVSFNPT--DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSV 123 (380)
T ss_dssp GGCCCCCCC--CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEE
T ss_pred ccccccccc--eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEE
Confidence 344556643 55667889999999996 48999999999999999999999999999999999999999999 78899
Q ss_pred EEEEcCCeEEEEeCCCCe-------EEEEeccCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeEEe-----ec
Q 001039 938 LTASHDGTVKMWDVRTDT-------CVATVGRCSSAVLCMEYDDS-TGILAAGGRDAVANIWDIRAGRQMHKF-----LG 1004 (1179)
Q Consensus 938 ~sgs~dg~I~iwd~~~~~-------~~~~~~~~~~~v~~l~~sp~-~~~l~sgs~dg~I~iwD~~~~~~~~~~-----~~ 1004 (1179)
++|+.|+.+++||+.+.. ....+.+|.+.+.++.|+|+ +..+++|+.|+.|++||+++++.+..+ .+
T Consensus 124 as~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~ 203 (380)
T 3iz6_a 124 ACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSG 203 (380)
T ss_dssp EECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSS
T ss_pred EEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCC
Confidence 999999999999987532 33456789999999999996 457999999999999999999988877 67
Q ss_pred CCCCeEEEEEc---CCEEEEEeCCCcEEEEEcc-CCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCc
Q 001039 1005 HTKWIRSIRMD---RDTVITGSDDWTARMWSIS-RGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGG 1080 (1179)
Q Consensus 1005 ~~~~I~sl~~~---~~~l~sgs~dg~I~iwd~~-~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~ 1080 (1179)
|...|.+++++ ++.+++|+.||+|++||++ .++.+..+.+|.+.|++++|+|++++|++|+.||+|++||+.++
T Consensus 204 h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~-- 281 (380)
T 3iz6_a 204 HTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG-- 281 (380)
T ss_dssp CCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT--
T ss_pred CccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC--
Confidence 89999999994 5699999999999999998 55788889999999999999999999999999999999999984
Q ss_pred ceEEEeecccC---------ceEEEEecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEE
Q 001039 1081 IKCVKNVTIHS---------SAILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRC 1151 (1179)
Q Consensus 1081 ~~~~~~~~~h~---------~~i~sis~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~ 1151 (1179)
.++..+..+. ....+++|+|+++++|+.||.|++||+...+ ... .......+|.+.|++
T Consensus 282 -~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~---------~~~--~~~~~~~~h~~~v~~ 349 (380)
T 3iz6_a 282 -HQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAE---------MVL--NLGTLQNSHEGRISC 349 (380)
T ss_dssp -EEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCC---------EEE--EECCSCSSCCCCCCE
T ss_pred -cEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCc---------eEE--EEecccCCCCCceEE
Confidence 4444443322 2346678999999999999999999987331 110 111123689999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001039 1152 IASDLERKRICSGGRNGLLRLWEATIN 1178 (1179)
Q Consensus 1152 v~fspdg~~Lasgs~Dg~I~vWdv~tg 1178 (1179)
++|+|||++|+|||.||+|++|++..+
T Consensus 350 l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 350 LGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp EEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred EEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 999999999999999999999999865
No 32
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1e-35 Score=343.95 Aligned_cols=291 Identities=13% Similarity=0.219 Sum_probs=234.1
Q ss_pred cccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEEEeCCCc
Q 001039 825 GHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQS 904 (1179)
Q Consensus 825 gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~sgs~dg~ 904 (1179)
.|.+.|.+++|+ |||++|++++ |+++++||.. ...+...... +..
T Consensus 28 ~~~~~v~~~~fs------------~dG~~l~~~s-d~~~r~Wd~~------~~~~~~~~~~-----~~~----------- 72 (344)
T 4gqb_B 28 CMERQLEAARYR------------SDGALLLGAS-SLSGRCWAGS------LWLFKDPCAA-----PNE----------- 72 (344)
T ss_dssp SCCSEEEEEEEC------------TTSCEEEEEE-CCSSSCCCEE------EEEESSGGGT-----TCG-----------
T ss_pred cccCCEEEEEEC------------CCCCEEEEEe-CCceEEeece------eeeecccccc-----CCc-----------
Confidence 467778999987 8999988887 7788888721 0111100000 000
Q ss_pred EEEEECCCCeEEEEeecCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEE----eccCCCcEEEEEEcCCCCEEE
Q 001039 905 VLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVAT----VGRCSSAVLCMEYDDSTGILA 980 (1179)
Q Consensus 905 I~iwd~~t~~~~~~~~~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~----~~~~~~~v~~l~~sp~~~~l~ 980 (1179)
+.. .....+...|.+++|++++.+++|+.||+|++||+.+++.... ..+|.+.|.+++|+|+|++|+
T Consensus 73 --------~~~-~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~ 143 (344)
T 4gqb_B 73 --------GFC-SAGVQTEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAV 143 (344)
T ss_dssp --------GGC-SEEEEESSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred --------cee-eeeeccCCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEE
Confidence 000 1112245679999999888999999999999999999875543 347999999999999999999
Q ss_pred EEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcC---CEEEEEeCCCcEEEEEccCCeeeEEee--cCCcCEEEEEEe
Q 001039 981 AGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR---DTVITGSDDWTARMWSISRGTCDAVLA--CHAGPVQCVEYS 1055 (1179)
Q Consensus 981 sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~--~h~~~V~~l~~s 1055 (1179)
+|+.||.|++||+++++.+..+.+|...|.+++|++ ..+++|+.||+|++||+++++....+. .|...+++++|+
T Consensus 144 sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (344)
T 4gqb_B 144 SGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWH 223 (344)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEEC
T ss_pred EEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeec
Confidence 999999999999999999999999999999999954 378999999999999999999888764 456679999999
Q ss_pred cC-CCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEE--ecCC-CEEEEEECCCcEEEEeCCCCCcCcccCCCC
Q 001039 1056 SS-DRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSI--NAGD-HWLGIGAADNSMSLFHRPQERLGGFSGTGS 1131 (1179)
Q Consensus 1056 pd-g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~si--s~dg-~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~ 1131 (1179)
|+ ++++++|+.||.|++||+++ .+++..+.+|...|.++ +|++ ++|++|+.||+|++||+.++
T Consensus 224 p~~~~~l~sg~~dg~v~~wd~~~---~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~---------- 290 (344)
T 4gqb_B 224 PQQSEVFVFGDENGTVSLVDTKS---TSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS---------- 290 (344)
T ss_dssp SSCTTEEEEEETTSEEEEEESCC-----CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC----------
T ss_pred CCCCcceEEeccCCcEEEEECCC---CcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC----------
Confidence 95 67889999999999999998 45677788999998776 6787 58999999999999998732
Q ss_pred ccccceeeeecCCCcccEEEEEEcCCCC-EEEEEeCCCcEEEEECCCC
Q 001039 1132 KMSGWQLYRTPQKTVAVVRCIASDLERK-RICSGGRNGLLRLWEATIN 1178 (1179)
Q Consensus 1132 ~~~~~~~~~~~~~h~~~V~~v~fspdg~-~Lasgs~Dg~I~vWdv~tg 1178 (1179)
++. ...+|.+.|++++|+|+++ +|+|||.||+|++|++.+.
T Consensus 291 -----~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 291 -----ELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp -----EEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred -----cEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 333 3578999999999999986 5779999999999999764
No 33
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1e-34 Score=330.51 Aligned_cols=287 Identities=24% Similarity=0.504 Sum_probs=258.8
Q ss_pred CceeEEEeccccccEEE--EecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEE
Q 001039 872 GSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKM 948 (1179)
Q Consensus 872 ~~~~~~~l~~h~~~v~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~i 948 (1179)
.......+.+|...|.+ ++++++++++|+.||.|++||..+++....+.+|...|.+++|+ +++++++|+.||.|++
T Consensus 12 ~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~v 91 (312)
T 4ery_A 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKI 91 (312)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEE
Confidence 34566788999999986 58999999999999999999999999999999999999999999 6889999999999999
Q ss_pred EeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcC--CEEEEEeCCC
Q 001039 949 WDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR--DTVITGSDDW 1026 (1179)
Q Consensus 949 wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~--~~l~sgs~dg 1026 (1179)
||+++++.+..+.+|...|.+++|+|+++++++|+.||.|++||+++++.+..+..|...|.+++|++ +.+++|+.||
T Consensus 92 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 171 (312)
T 4ery_A 92 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 171 (312)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999954 5999999999
Q ss_pred cEEEEEccCCeeeEEee-cCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceE----EEE-ecC
Q 001039 1027 TARMWSISRGTCDAVLA-CHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAI----LSI-NAG 1100 (1179)
Q Consensus 1027 ~I~iwd~~~~~~~~~~~-~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i----~si-s~d 1100 (1179)
.|++||+++++.+..+. .+...+..++|+|+++++++++.||.|++||+.+ .+++..+.+|.... ..+ .++
T Consensus 172 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (312)
T 4ery_A 172 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK---GKCLKTYTGHKNEKYCIFANFSVTG 248 (312)
T ss_dssp CEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTT---TEEEEEECSSCCSSSCCCEEEECSS
T ss_pred cEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCC---CcEEEEEEecCCceEEEEEEEEeCC
Confidence 99999999998877764 4667899999999999999999999999999988 46677777776543 223 367
Q ss_pred CCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEe--CCCcEEEEECC
Q 001039 1101 DHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGG--RNGLLRLWEAT 1176 (1179)
Q Consensus 1101 g~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs--~Dg~I~vWdv~ 1176 (1179)
+.++++|+.||.|++||+.+. +....+.+|...|.+++|+|++++|++++ .||+|++|+.+
T Consensus 249 ~~~l~sg~~dg~i~vwd~~~~---------------~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 249 GKWIVSGSEDNLVYIWNLQTK---------------EIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp SCEEEECCTTSCEEEEETTTC---------------CEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred CcEEEEECCCCEEEEEECCCc---------------hhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 899999999999999999743 56677889999999999999999999997 69999999975
No 34
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=7.7e-35 Score=331.49 Aligned_cols=282 Identities=24% Similarity=0.433 Sum_probs=255.1
Q ss_pred cccccCCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeeccc
Q 001039 762 AEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKR 839 (1179)
Q Consensus 762 ~~~~gh~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~ 839 (1179)
..+.+|...|.+++|+|||+++++++.| |++|+..++. ..+.+.+|...|.+++|+
T Consensus 17 ~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~-------------------~~~~~~~h~~~v~~~~~~--- 74 (312)
T 4ery_A 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-------------------FEKTISGHKLGISDVAWS--- 74 (312)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-------------------EEEEECCCSSCEEEEEEC---
T ss_pred EEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc-------------------cchhhccCCCceEEEEEc---
Confidence 3457899999999999999999999988 9999998766 677899999999999998
Q ss_pred ceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEE--EecCCCEEEEEeCCCcEEEEECCCCeEEE
Q 001039 840 EVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLLE 917 (1179)
Q Consensus 840 ~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~ 917 (1179)
|++++|++|+.||.|++||+. .......+.+|...|.+ ++++++++++|+.||+|++||+.+++.+.
T Consensus 75 ---------~~~~~l~s~~~d~~i~vwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~ 143 (312)
T 4ery_A 75 ---------SDSNLLVSASDDKTLKIWDVS--SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 143 (312)
T ss_dssp ---------TTSSEEEEEETTSEEEEEETT--TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred ---------CCCCEEEEECCCCEEEEEECC--CCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEE
Confidence 899999999999999999976 45667888999999885 58999999999999999999999999999
Q ss_pred EeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEec-cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 001039 918 ELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVG-RCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRA 995 (1179)
Q Consensus 918 ~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~-~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~ 995 (1179)
.+..|...|.+++|+ ++..+++|+.||.|++||+++++.+..+. .+...+.+++|+|+++++++++.||.|++||+++
T Consensus 144 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 223 (312)
T 4ery_A 144 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 223 (312)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTT
T ss_pred EecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 999999999999999 68899999999999999999998887764 4567899999999999999999999999999999
Q ss_pred CceeEEeecCCCCeEEE--EE---cCCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEe--CCC
Q 001039 996 GRQMHKFLGHTKWIRSI--RM---DRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGS--SDG 1068 (1179)
Q Consensus 996 ~~~~~~~~~~~~~I~sl--~~---~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs--~Dg 1068 (1179)
++.+..+.+|.....++ .+ ++.++++|+.||.|++||+.+++.+..+.+|...|.+++|+|+++++++++ .|+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~ 303 (312)
T 4ery_A 224 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK 303 (312)
T ss_dssp TEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTC
T ss_pred CcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCc
Confidence 99999998887654322 22 456899999999999999999999999999999999999999999999987 699
Q ss_pred cEEEEEcC
Q 001039 1069 LLRFWEND 1076 (1179)
Q Consensus 1069 ~I~iwd~~ 1076 (1179)
.|++|+.+
T Consensus 304 ~i~~W~~d 311 (312)
T 4ery_A 304 TIKLWKSD 311 (312)
T ss_dssp CEEEEECC
T ss_pred cEEEecCC
Confidence 99999864
No 35
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.4e-35 Score=344.96 Aligned_cols=286 Identities=18% Similarity=0.233 Sum_probs=236.2
Q ss_pred cccCCcceEEEEEccCCCceeeccCc--------eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEe
Q 001039 764 ASGIGRSWVQSMFSREASSRSHSFSR--------VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHC 835 (1179)
Q Consensus 764 ~~gh~~~i~~~~fSpdg~~las~~~d--------I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~ 835 (1179)
...|.+.|.+++|||||++||+++.+ |++|+..++... ........+|.+.|++++|
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~---------------~~~~~~~~~~~~~V~~~~~ 102 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPN---------------ESLCTAGVQTEAGVTDVAW 102 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---C---------------GGGCSEEEECSSCEEEEEE
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcc---------------eeEecccCCCCCCEEEEEE
Confidence 35688999999999999999999974 666666555421 1134456789999999999
Q ss_pred ecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCcee--EEEeccccccEEE--EecCCCEEEEEeCCCcEEEEECC
Q 001039 836 VTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSEL--RATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQ 911 (1179)
Q Consensus 836 s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~--~~~l~~h~~~v~~--~s~d~~~l~sgs~dg~I~iwd~~ 911 (1179)
+ |++. +++++.||+|++||+....... .....+|...|.+ ++|++++|++|+.||+|++||+.
T Consensus 103 s------------~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~ 169 (357)
T 4g56_B 103 V------------SEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLS 169 (357)
T ss_dssp E------------TTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred c------------CCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence 8 6765 5567889999999987433222 2345689999986 58999999999999999999999
Q ss_pred CCeEEEEeecCCCcEEEEEEe-CC-CEEEEEEcCCeEEEEeCCCCeEEEEec--cCCCcEEEEEEcCC-CCEEEEEeCCC
Q 001039 912 TSQLLEELKGHDAQVSCVRML-SG-ERVLTASHDGTVKMWDVRTDTCVATVG--RCSSAVLCMEYDDS-TGILAAGGRDA 986 (1179)
Q Consensus 912 t~~~~~~~~~h~~~V~~l~~s-~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~--~~~~~v~~l~~sp~-~~~l~sgs~dg 986 (1179)
+++.+..+.+|...|.+++|+ ++ ..+++++.||+|++||+++++....+. .+...+.+++|+|+ +.++++|+.|+
T Consensus 170 ~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~ 249 (357)
T 4g56_B 170 QKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETG 249 (357)
T ss_dssp TTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSS
T ss_pred CCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeeccc
Confidence 999999999999999999998 33 478999999999999999988766553 46778999999997 56888999999
Q ss_pred eEEEEeCCCCceeEEeecCCCCeEEEEEcC---CEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEec-CCCEEE
Q 001039 987 VANIWDIRAGRQMHKFLGHTKWIRSIRMDR---DTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSS-SDRGII 1062 (1179)
Q Consensus 987 ~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l~ 1062 (1179)
.|++||+++++.+..+.+|...|++++|++ .+|++|+.||+|++||+++++.+..+ +|.+.|++++|+| ++++|+
T Consensus 250 ~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~ 328 (357)
T 4g56_B 250 NVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFT 328 (357)
T ss_dssp CEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEE
T ss_pred ceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEE
Confidence 999999999999999999999999999964 37999999999999999999887665 6999999999998 799999
Q ss_pred EEeCCCcEEEEEcCCC
Q 001039 1063 TGSSDGLLRFWENDDA 1078 (1179)
Q Consensus 1063 sgs~Dg~I~iwd~~~~ 1078 (1179)
+|+.||+|++||+.+.
T Consensus 329 s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 329 TVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EEETTSCEEEEECC--
T ss_pred EEcCCCeEEEEECCCC
Confidence 9999999999999763
No 36
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=6.4e-36 Score=351.08 Aligned_cols=285 Identities=20% Similarity=0.343 Sum_probs=253.5
Q ss_pred cccccCCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeeccc
Q 001039 762 AEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKR 839 (1179)
Q Consensus 762 ~~~~gh~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~ 839 (1179)
..+.||...|.+++|+|||+++++|+.| |++||+.++. ..+.+.+|...|.+++|+
T Consensus 60 ~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~-------------------~~~~~~~h~~~v~~~~~s--- 117 (380)
T 3iz6_a 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQ-------------------KTHAIKLHCPWVMECAFA--- 117 (380)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE-------------------EEEEEECCCTTCCCCEEC---
T ss_pred ecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-------------------cceEEecCCCCEEEEEEC---
Confidence 3467899999999999999999999999 9999998776 688899999999999998
Q ss_pred ceeccccccCCCCEEEEEeCCCcEEEEcCCCC-----CceeEEEeccccccEEEE--ecC-CCEEEEEeCCCcEEEEECC
Q 001039 840 EVWDLVGDREDAGFFISGSTDCLVKIWDPSLR-----GSELRATLKGHTRTVRAI--NSD-RGKVVSGSDDQSVLVWDKQ 911 (1179)
Q Consensus 840 ~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~-----~~~~~~~l~~h~~~v~~~--s~d-~~~l~sgs~dg~I~iwd~~ 911 (1179)
|++++|++|+.|+.|++||+... .......+.+|.+.+.++ +++ +..+++|+.|++|++||+.
T Consensus 118 ---------~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~ 188 (380)
T 3iz6_a 118 ---------PNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVT 188 (380)
T ss_dssp ---------TTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTT
T ss_pred ---------CCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcC
Confidence 89999999999999999998632 122445678999988754 554 5679999999999999999
Q ss_pred CCeEEEEe-----ecCCCcEEEEEEe--CCCEEEEEEcCCeEEEEeCC-CCeEEEEeccCCCcEEEEEEcCCCCEEEEEe
Q 001039 912 TSQLLEEL-----KGHDAQVSCVRML--SGERVLTASHDGTVKMWDVR-TDTCVATVGRCSSAVLCMEYDDSTGILAAGG 983 (1179)
Q Consensus 912 t~~~~~~~-----~~h~~~V~~l~~s--~~~~l~sgs~dg~I~iwd~~-~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs 983 (1179)
+++.+..+ .+|...|.+++++ +++.+++|+.||+|++||++ .++.+..+.+|...|.+++|+|+++++++|+
T Consensus 189 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s 268 (380)
T 3iz6_a 189 TGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGS 268 (380)
T ss_dssp TCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEEC
T ss_pred CCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEc
Confidence 99998887 6799999999997 57899999999999999998 4577888999999999999999999999999
Q ss_pred CCCeEEEEeCCCCceeEEeecCCC-------CeEEEEEc--CCEEEEEeCCCcEEEEEccCCeeeEEe----ecCCcCEE
Q 001039 984 RDAVANIWDIRAGRQMHKFLGHTK-------WIRSIRMD--RDTVITGSDDWTARMWSISRGTCDAVL----ACHAGPVQ 1050 (1179)
Q Consensus 984 ~dg~I~iwD~~~~~~~~~~~~~~~-------~I~sl~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~----~~h~~~V~ 1050 (1179)
.||.|++||+++++.+..+..+.. .|++++|+ +.++++|+.||.|++||+.+++....+ .+|.+.|+
T Consensus 269 ~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~ 348 (380)
T 3iz6_a 269 DDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRIS 348 (380)
T ss_dssp SSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCC
T ss_pred CCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceE
Confidence 999999999999999888765432 47889985 569999999999999999999888777 67999999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEcCC
Q 001039 1051 CVEYSSSDRGIITGSSDGLLRFWENDD 1077 (1179)
Q Consensus 1051 ~l~~spdg~~l~sgs~Dg~I~iwd~~~ 1077 (1179)
+++|+|+|++|++|+.||+|++|++..
T Consensus 349 ~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 349 CLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp EEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred EEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 999999999999999999999999876
No 37
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.8e-35 Score=338.87 Aligned_cols=289 Identities=21% Similarity=0.327 Sum_probs=243.3
Q ss_pred ccccCCc-ceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeeccc
Q 001039 763 EASGIGR-SWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKR 839 (1179)
Q Consensus 763 ~~~gh~~-~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~ 839 (1179)
.+.+|.. .+..++|||||++||+|+.| |++||+.++... .......+|.+.|++++|+
T Consensus 10 ~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~----------------~~~~~~~~h~~~v~~~~~s--- 70 (345)
T 3fm0_A 10 RVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWI----------------CKSVLSEGHQRTVRKVAWS--- 70 (345)
T ss_dssp EECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEE----------------EEEEECSSCSSCEEEEEEC---
T ss_pred eecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcce----------------eeeeeccccCCcEEEEEEC---
Confidence 3567877 78888999999999999998 999998865410 0122347899999999998
Q ss_pred ceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEE--EecCCCEEEEEeCCCcEEEEECCCC---e
Q 001039 840 EVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTS---Q 914 (1179)
Q Consensus 840 ~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~--~s~d~~~l~sgs~dg~I~iwd~~t~---~ 914 (1179)
|++++|++|+.|++|++||...........+.+|...|.+ ++|++++|++|+.||+|++||+.++ +
T Consensus 71 ---------p~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~ 141 (345)
T 3fm0_A 71 ---------PCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE 141 (345)
T ss_dssp ---------TTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEE
T ss_pred ---------CCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeE
Confidence 8999999999999999999875555667889999999986 5899999999999999999999876 4
Q ss_pred EEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCe--EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 001039 915 LLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDT--CVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIW 991 (1179)
Q Consensus 915 ~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~--~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iw 991 (1179)
++..+.+|...|.+++|+ ++.++++|+.|++|++||.++++ +...+.+|...|.+++|+|++++|++|+.||.|++|
T Consensus 142 ~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW 221 (345)
T 3fm0_A 142 CVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221 (345)
T ss_dssp EEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEe
Confidence 567788999999999999 68899999999999999998875 456788999999999999999999999999999999
Q ss_pred eCCCC---------------ceeEEeec-CCCCeEEEEEcC--CEEEEEeCCCcEEEEEccCCe---------eeEEeec
Q 001039 992 DIRAG---------------RQMHKFLG-HTKWIRSIRMDR--DTVITGSDDWTARMWSISRGT---------CDAVLAC 1044 (1179)
Q Consensus 992 D~~~~---------------~~~~~~~~-~~~~I~sl~~~~--~~l~sgs~dg~I~iwd~~~~~---------~~~~~~~ 1044 (1179)
|.... +++..+.+ |...|.+++|++ ..+++++.|+.|++|+...+. ......+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~ 301 (345)
T 3fm0_A 222 RQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQA 301 (345)
T ss_dssp EEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTS
T ss_pred ccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeeccc
Confidence 96432 23444544 888999999964 589999999999999987642 1122357
Q ss_pred CCcCEEEEEEecCC-CEEEEEeCCCcEEEEEcCCCC
Q 001039 1045 HAGPVQCVEYSSSD-RGIITGSSDGLLRFWENDDAG 1079 (1179)
Q Consensus 1045 h~~~V~~l~~spdg-~~l~sgs~Dg~I~iwd~~~~~ 1079 (1179)
|...|++++|+|++ .+|++|+.||+|++|++.+..
T Consensus 302 h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 302 HSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp SSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred ccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence 99999999999998 599999999999999998843
No 38
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=3.4e-34 Score=329.10 Aligned_cols=313 Identities=20% Similarity=0.342 Sum_probs=246.2
Q ss_pred EEeCCCcE--EEEcCCCCCceeEEEeccccccEEEE--ecC-CCEEEEEeCCCcEEEEECCCC-----eEEEEeecCCCc
Q 001039 856 SGSTDCLV--KIWDPSLRGSELRATLKGHTRTVRAI--NSD-RGKVVSGSDDQSVLVWDKQTS-----QLLEELKGHDAQ 925 (1179)
Q Consensus 856 sgs~Dg~I--~lWd~~~~~~~~~~~l~~h~~~v~~~--s~d-~~~l~sgs~dg~I~iwd~~t~-----~~~~~~~~h~~~ 925 (1179)
+|.+.|+. .++........+..+++||.+.|+++ +|+ +++|+||+.||+|++||+.++ .+...+.+|...
T Consensus 9 ~g~d~g~~~~~~~~~~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~ 88 (340)
T 4aow_A 9 SGVDLGTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHF 88 (340)
T ss_dssp -----------------CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSC
T ss_pred cccCCCCccEEEEEccCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCC
Confidence 45555653 33443333445667899999999975 676 689999999999999998764 456788999999
Q ss_pred EEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee-EEee
Q 001039 926 VSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQM-HKFL 1003 (1179)
Q Consensus 926 V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~-~~~~ 1003 (1179)
|.+++|+ ++.++++|+.||.|++|+...+........+...+....++++++.+++|+.|+.+++||....... ....
T Consensus 89 V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~ 168 (340)
T 4aow_A 89 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDE 168 (340)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSS
T ss_pred EEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEec
Confidence 9999999 6889999999999999999999998888888899999999999999999999999999999876543 3456
Q ss_pred cCCCCeEEEEEcC----CEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 001039 1004 GHTKWIRSIRMDR----DTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAG 1079 (1179)
Q Consensus 1004 ~~~~~I~sl~~~~----~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~ 1079 (1179)
+|...+..+++.. ..+++++.|+.|++||+++++....+.+|.+.|++++|+|++++|++|+.||.|++||+.+
T Consensus 169 ~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~-- 246 (340)
T 4aow_A 169 SHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE-- 246 (340)
T ss_dssp SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTT--
T ss_pred cccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEecc--
Confidence 7889999999853 3789999999999999999999999999999999999999999999999999999999998
Q ss_pred cceEEEeecccCceEEE--EecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCC
Q 001039 1080 GIKCVKNVTIHSSAILS--INAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLE 1157 (1179)
Q Consensus 1080 ~~~~~~~~~~h~~~i~s--is~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspd 1157 (1179)
...+..+..+ ..+.+ +++++.++ +++.|+.|++||+.+......... ........+|...|++++|+||
T Consensus 247 -~~~~~~~~~~-~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~------~~~~~~~~~h~~~v~~l~~s~d 317 (340)
T 4aow_A 247 -GKHLYTLDGG-DIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQ------EVISTSSKAEPPQCTSLAWSAD 317 (340)
T ss_dssp -TEEEEEEECS-SCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECC------C-------CCCCCEEEEEECTT
T ss_pred -CceeeeecCC-ceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccc------cceeeeccCCCCCEEEEEECCC
Confidence 4556655544 34444 46776555 566799999999975422111100 1222334578999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCC
Q 001039 1158 RKRICSGGRNGLLRLWEATINI 1179 (1179)
Q Consensus 1158 g~~Lasgs~Dg~I~vWdv~tg~ 1179 (1179)
|++||+|+.||+|+|||++||.
T Consensus 318 g~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 318 GQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp SSEEEEEETTSCEEEEEEEC--
T ss_pred CCEEEEEeCCCEEEEEeCCCcC
Confidence 9999999999999999999984
No 39
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-36 Score=358.85 Aligned_cols=335 Identities=13% Similarity=0.220 Sum_probs=276.2
Q ss_pred cCceEEEEeecccceeccccccCCCC-EEEEE----------eCCCcEEEEcCCCCCce-eEEEeccccccEEE--EecC
Q 001039 827 AGAITALHCVTKREVWDLVGDREDAG-FFISG----------STDCLVKIWDPSLRGSE-LRATLKGHTRTVRA--INSD 892 (1179)
Q Consensus 827 ~~~V~~v~~s~~~~~~~~~~~s~d~~-~Lasg----------s~Dg~I~lWd~~~~~~~-~~~~l~~h~~~v~~--~s~d 892 (1179)
...|.+++|+ |+++ ++++| +.||.|++||+...... .... ..|...|.+ ++++
T Consensus 12 ~~~v~~~~~s------------p~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~-~~~~~~v~~~~~s~~ 78 (416)
T 2pm9_A 12 FSRTATFAWS------------HDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS-LQVDSKFNDLDWSHN 78 (416)
T ss_dssp EEESCBCCBC------------SSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC-CCCSSCEEEEEECSS
T ss_pred hhhcceEeeC------------CCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE-EecCCceEEEEECCC
Confidence 3457777776 7886 99999 89999999998733221 2222 357888885 5899
Q ss_pred CCEEEEEeCCCcEEEEECCC----CeEEEEeecCCCcEEEEEEe-C-CCEEEEEEcCCeEEEEeCCCCe------EEEE-
Q 001039 893 RGKVVSGSDDQSVLVWDKQT----SQLLEELKGHDAQVSCVRML-S-GERVLTASHDGTVKMWDVRTDT------CVAT- 959 (1179)
Q Consensus 893 ~~~l~sgs~dg~I~iwd~~t----~~~~~~~~~h~~~V~~l~~s-~-~~~l~sgs~dg~I~iwd~~~~~------~~~~- 959 (1179)
+++|++|+.||.|++||+.+ .+.+..+.+|...|.+++|+ + +.++++++.||.|++||+.+++ ....
T Consensus 79 ~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 158 (416)
T 2pm9_A 79 NKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTP 158 (416)
T ss_dssp SSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCC
T ss_pred CCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccc
Confidence 99999999999999999987 45888999999999999999 4 7899999999999999999886 3322
Q ss_pred --eccCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeEEeecC------CCCeEEEEEcCC---EEEEEeCCC-
Q 001039 960 --VGRCSSAVLCMEYDDS-TGILAAGGRDAVANIWDIRAGRQMHKFLGH------TKWIRSIRMDRD---TVITGSDDW- 1026 (1179)
Q Consensus 960 --~~~~~~~v~~l~~sp~-~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~------~~~I~sl~~~~~---~l~sgs~dg- 1026 (1179)
...|...|.+++|+|+ +.++++++.||.|++||+++++.+..+..+ ...+.+++|+++ .+++++.|+
T Consensus 159 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 238 (416)
T 2pm9_A 159 GQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN 238 (416)
T ss_dssp CCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS
T ss_pred ccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCC
Confidence 3568889999999998 789999999999999999999999888776 789999999653 899999999
Q ss_pred --cEEEEEccCC-eeeEEee-cCCcCEEEEEEec-CCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEE--Eec
Q 001039 1027 --TARMWSISRG-TCDAVLA-CHAGPVQCVEYSS-SDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILS--INA 1099 (1179)
Q Consensus 1027 --~I~iwd~~~~-~~~~~~~-~h~~~V~~l~~sp-dg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~s--is~ 1099 (1179)
.|++||++++ .....+. +|...|++++|+| ++++|++++.||.|++||+.+ .+.+..+.+|...+.+ ++|
T Consensus 239 ~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~---~~~~~~~~~~~~~v~~~~~s~ 315 (416)
T 2pm9_A 239 DPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES---AEQLSQFPARGNWCFKTKFAP 315 (416)
T ss_dssp SCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSS---CCEEEEEECSSSCCCCEEECT
T ss_pred CceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCC---CccceeecCCCCceEEEEECC
Confidence 9999999986 6777787 8999999999999 999999999999999999988 4667777788887754 578
Q ss_pred CC-CEEEEEECCCcEEEEeCCCCCcCcccC---------------------CCCccccceeeeecCCCcccEEEEEEcCC
Q 001039 1100 GD-HWLGIGAADNSMSLFHRPQERLGGFSG---------------------TGSKMSGWQLYRTPQKTVAVVRCIASDLE 1157 (1179)
Q Consensus 1100 dg-~~lasgs~Dg~I~iwd~~~~~~~~~~~---------------------~g~~~~~~~~~~~~~~h~~~V~~v~fspd 1157 (1179)
++ .++++++.||.|++||+.+........ .+.....+.. .....|...+++++|+||
T Consensus 316 ~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~d 394 (416)
T 2pm9_A 316 EAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHL-QAPTWYGEPSPAAHWAFG 394 (416)
T ss_dssp TCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCC-CCCSTTCCCSCCCEEETT
T ss_pred CCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccc-cCCccccCCccceEEeeC
Confidence 88 899999999999999998654321110 0111111122 334457888999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCC
Q 001039 1158 RKRICSGGRNGLLRLWEATIN 1178 (1179)
Q Consensus 1158 g~~Lasgs~Dg~I~vWdv~tg 1178 (1179)
|++||+++.||+|+||++.|+
T Consensus 395 g~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 395 GKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp TEEECBCTTSSCBCCBCCCCC
T ss_pred CeEEEEeCCCCeEEEEEeccC
Confidence 999999999999999999886
No 40
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=5e-34 Score=326.47 Aligned_cols=285 Identities=19% Similarity=0.342 Sum_probs=247.7
Q ss_pred cceEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCC---ceeEEEeccccccEEE--EecC
Q 001039 818 SNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRG---SELRATLKGHTRTVRA--INSD 892 (1179)
Q Consensus 818 ~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~---~~~~~~l~~h~~~v~~--~s~d 892 (1179)
....++.||.+.|++++|+| .++++|+||+.||+|++|++.... ......+.+|...|.+ ++++
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~-----------~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~d 76 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSA-----------GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTAD 76 (319)
T ss_dssp EEEEEECCCSSCEEEEEECS-----------SCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTT
T ss_pred EEEEEEccccceEEEEEccC-----------CCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCC
Confidence 35678999999999999983 345899999999999999975222 2345778999999985 5899
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEE
Q 001039 893 RGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCME 971 (1179)
Q Consensus 893 ~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~ 971 (1179)
++++++|+.||+|++||+.+++.+..+.+|...|.+++|+ ++..+++|+.||+|++||++ ++++..+.+|...|.+++
T Consensus 77 g~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~ 155 (319)
T 3frx_A 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVR 155 (319)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEE
Confidence 9999999999999999999999999999999999999999 68899999999999999986 567778889999999999
Q ss_pred EcCC------CCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcC--CEEEEEeCCCcEEEEEccCCeeeEEee
Q 001039 972 YDDS------TGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR--DTVITGSDDWTARMWSISRGTCDAVLA 1043 (1179)
Q Consensus 972 ~sp~------~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~ 1043 (1179)
++|. +..+++++.|+.|++||+++++....+.+|...|.++++++ +++++|+.||+|++||+.+++.+..+.
T Consensus 156 ~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~ 235 (319)
T 3frx_A 156 VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS 235 (319)
T ss_dssp ECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred EccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec
Confidence 9985 44899999999999999999999999999999999999965 599999999999999999999998887
Q ss_pred cCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeec--------ccCceE--EEEecCCCEEEEEECCCcE
Q 001039 1044 CHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVT--------IHSSAI--LSINAGDHWLGIGAADNSM 1113 (1179)
Q Consensus 1044 ~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~--------~h~~~i--~sis~dg~~lasgs~Dg~I 1113 (1179)
. ...|.+++|+|++.++++++.++ +++|+++. ...+..+. .|...+ .+++|+|++|++|+.||.|
T Consensus 236 ~-~~~v~~~~~sp~~~~la~~~~~~-i~v~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i 310 (319)
T 3frx_A 236 A-QDEVFSLAFSPNRYWLAAATATG-IKVFSLDP---QYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVI 310 (319)
T ss_dssp C-CSCEEEEEECSSSSEEEEEETTE-EEEEEETT---EEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCE
T ss_pred C-CCcEEEEEEcCCCCEEEEEcCCC-cEEEEeCc---CeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceE
Confidence 5 56899999999999999887655 99999987 33333332 234445 4558999999999999999
Q ss_pred EEEeCC
Q 001039 1114 SLFHRP 1119 (1179)
Q Consensus 1114 ~iwd~~ 1119 (1179)
++||+.
T Consensus 311 ~vWd~~ 316 (319)
T 3frx_A 311 RVWQVM 316 (319)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 999986
No 41
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.5e-34 Score=332.42 Aligned_cols=297 Identities=19% Similarity=0.324 Sum_probs=240.8
Q ss_pred eeEEEeccccccEEEE-------ec-CCCEEEEEeCCCcEEEEECCC-------CeEEEEeecCCCcEEEEEEe-CCCEE
Q 001039 874 ELRATLKGHTRTVRAI-------NS-DRGKVVSGSDDQSVLVWDKQT-------SQLLEELKGHDAQVSCVRML-SGERV 937 (1179)
Q Consensus 874 ~~~~~l~~h~~~v~~~-------s~-d~~~l~sgs~dg~I~iwd~~t-------~~~~~~~~~h~~~V~~l~~s-~~~~l 937 (1179)
.....+.+|...|.++ ++ ++++|++|+.||+|++||+.+ +.....+.+|...|.+++|+ ++.++
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l 91 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA 91 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEE
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEE
Confidence 3457889999999976 34 889999999999999999874 35677889999999999999 67899
Q ss_pred EEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee---cCCCCeEEEEE
Q 001039 938 LTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFL---GHTKWIRSIRM 1014 (1179)
Q Consensus 938 ~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~---~~~~~I~sl~~ 1014 (1179)
++|+.|++|++||+++++.+..+.+|...|.+++|+|+++++++|+.|+.|++||+.. ....... +|...|.++++
T Consensus 92 ~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~ 170 (343)
T 2xzm_R 92 ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVRY 170 (343)
T ss_dssp EEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEEE
T ss_pred EEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeeee
Confidence 9999999999999999999999999999999999999999999999999999999984 3333333 68889999999
Q ss_pred cC------------CEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcce
Q 001039 1015 DR------------DTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIK 1082 (1179)
Q Consensus 1015 ~~------------~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~ 1082 (1179)
++ .++++++.||+|++|| .+++....+.+|...|++++|+|+|++|++|+.||.|++||+......
T Consensus 171 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~- 248 (343)
T 2xzm_R 171 SPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYP- 248 (343)
T ss_dssp CCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSC-
T ss_pred ccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCccc-
Confidence 65 4799999999999999 556777888999999999999999999999999999999999543322
Q ss_pred EEEee-cccCceEEEEecCCCEEEEEECCCcEEEEeCCCCCcCcccC-CCCccccceeeeecCCCcccEEEEEEcCCCCE
Q 001039 1083 CVKNV-TIHSSAILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSG-TGSKMSGWQLYRTPQKTVAVVRCIASDLERKR 1160 (1179)
Q Consensus 1083 ~~~~~-~~h~~~i~sis~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~-~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~ 1160 (1179)
...+ .++.....+++|++.++++| .|+.|++||+.+........ ..... .......+|...|++++|+|+|++
T Consensus 249 -~~~~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~sp~g~~ 323 (343)
T 2xzm_R 249 -QREFDAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPI---TKAEGQKGKNPQCTSLAWNALGKK 323 (343)
T ss_dssp -SEEEECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSG---GGBTTBCCSCCCEEEEEECSSSCC
T ss_pred -ceeecCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcc---hhhhhhcCCCCceEEEEECCCCCe
Confidence 1222 22333335558999888765 57789999997543211000 00000 001123478889999999999999
Q ss_pred EEEEeCCCcEEEEECCCC
Q 001039 1161 ICSGGRNGLLRLWEATIN 1178 (1179)
Q Consensus 1161 Lasgs~Dg~I~vWdv~tg 1178 (1179)
|++|+.||+|++|++.+|
T Consensus 324 l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 324 LFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp EEEEETTSEEEEEEEEEE
T ss_pred EEEecCCceEEEEEEEcc
Confidence 999999999999999876
No 42
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=5.7e-35 Score=346.74 Aligned_cols=319 Identities=15% Similarity=0.173 Sum_probs=265.2
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEE-EEecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEE
Q 001039 849 EDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR-AINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVS 927 (1179)
Q Consensus 849 ~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~-~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~ 927 (1179)
|++++|++|+.||.|++||.. .......+..|..... .+++++++|++|+.||.|++||+.+++....+.+|...|.
T Consensus 66 ~~g~~l~~~~~d~~v~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~ 143 (420)
T 3vl1_A 66 KVGSHLYKARLDGHDFLFNTI--IRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEIT 143 (420)
T ss_dssp EEETTEEEEEETTEEEEEECC--SEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEE
T ss_pred ecCCeEEEEEcCCcEEEEEec--ccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccE
Confidence 899999999999999999976 3333344555532222 4689999999999999999999999999998899999999
Q ss_pred EEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeec--
Q 001039 928 CVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLG-- 1004 (1179)
Q Consensus 928 ~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~-- 1004 (1179)
+++|+ +++++++|+.||+|++||+.+++.+..+.+|...|.+++|+|+++.+++++.||.|++||+++++.+..+..
T Consensus 144 ~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 223 (420)
T 3vl1_A 144 KLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKE 223 (420)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTT
T ss_pred EEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCC
Confidence 99999 678999999999999999999999999999999999999999999999999999999999999999988875
Q ss_pred -CCCCeEEEEE-----------------------cCCEEEEEeCCCcEEEEEccCCeeeEEee-cCCcCEEEEEEecCCC
Q 001039 1005 -HTKWIRSIRM-----------------------DRDTVITGSDDWTARMWSISRGTCDAVLA-CHAGPVQCVEYSSSDR 1059 (1179)
Q Consensus 1005 -~~~~I~sl~~-----------------------~~~~l~sgs~dg~I~iwd~~~~~~~~~~~-~h~~~V~~l~~spdg~ 1059 (1179)
+...+.++++ +++.+++|+.||.|++||+++++....+. .|...|++++|+|+++
T Consensus 224 ~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 303 (420)
T 3vl1_A 224 NPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNA 303 (420)
T ss_dssp BTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCT
T ss_pred CCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCC
Confidence 4456666665 34489999999999999999998777765 5889999999999999
Q ss_pred -EEEEEeCCCcEEEEEcCCCCcceEEEeecc-cCceEEEE-ecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccc
Q 001039 1060 -GIITGSSDGLLRFWENDDAGGIKCVKNVTI-HSSAILSI-NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGW 1136 (1179)
Q Consensus 1060 -~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~-h~~~i~si-s~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~ 1136 (1179)
++++|+.||.|++||+.++.. .+..+.. |...+.++ .+++++|++|+.||.|++||+..... .......
T Consensus 304 ~~l~~g~~dg~i~vwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~------~~~~~~~ 375 (420)
T 3vl1_A 304 NYIYAGYENGMLAQWDLRSPEC--PVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPES------ERPAIEF 375 (420)
T ss_dssp TEEEEEETTSEEEEEETTCTTS--CSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTC------CSCEECT
T ss_pred CEEEEEeCCCeEEEEEcCCCcC--chhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCC------Cccceec
Confidence 999999999999999998542 2333444 56666665 57889999999999999999875311 1111111
Q ss_pred eeeeecCCCcccEEEEEEcCCCC---EEEEEeCCCcEEEEECCC
Q 001039 1137 QLYRTPQKTVAVVRCIASDLERK---RICSGGRNGLLRLWEATI 1177 (1179)
Q Consensus 1137 ~~~~~~~~h~~~V~~v~fspdg~---~Lasgs~Dg~I~vWdv~t 1177 (1179)
........|.+.|.+++|+||++ .|++++.+|.+.+|++..
T Consensus 376 ~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 376 ETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp TSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred cCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 12223557889999999999999 788888899999999875
No 43
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-34 Score=329.64 Aligned_cols=285 Identities=24% Similarity=0.378 Sum_probs=233.9
Q ss_pred ceEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEe-cc-ccccEEE--EecCCC
Q 001039 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATL-KG-HTRTVRA--INSDRG 894 (1179)
Q Consensus 819 ~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l-~~-h~~~v~~--~s~d~~ 894 (1179)
.++.+.+|.++|++++|+ ++ +||+|+.||+|++||+..........+ .+ |...|.+ ++|+++
T Consensus 6 ~~~~~~~h~~~v~~~~~s------------~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 71 (330)
T 2hes_X 6 LIKSLKLYKEKIWSFDFS------------QG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTS 71 (330)
T ss_dssp EEEEEECCSSCEEEEEEE------------TT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSS
T ss_pred cceeeccCCCceeeeccC------------CC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCC
Confidence 678899999999999998 55 999999999999999874434455555 44 9999985 589999
Q ss_pred EEEEEeCCCcEEEEECCC-------CeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCC----CeEEEEecc
Q 001039 895 KVVSGSDDQSVLVWDKQT-------SQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRT----DTCVATVGR 962 (1179)
Q Consensus 895 ~l~sgs~dg~I~iwd~~t-------~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~----~~~~~~~~~ 962 (1179)
+|++|+.|++|++||+.. .+.+..+.+|...|.+++|+ ++.+|++|+.|++|++||++. .+++..+.+
T Consensus 72 ~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~ 151 (330)
T 2hes_X 72 LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQE 151 (330)
T ss_dssp EEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECC
T ss_pred EEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEecc
Confidence 999999999999999853 45677889999999999999 688999999999999999943 256778889
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--ceeEEeecCCCCeEEEEEcCC----EEEEEeCCCcEEEEEccCC
Q 001039 963 CSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAG--RQMHKFLGHTKWIRSIRMDRD----TVITGSDDWTARMWSISRG 1036 (1179)
Q Consensus 963 ~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~--~~~~~~~~~~~~I~sl~~~~~----~l~sgs~dg~I~iwd~~~~ 1036 (1179)
|...|.+++|+|++.+|++|+.|+.|++||..++ +++..+.+|...|.+++|+++ .+++|+.|++|++||++++
T Consensus 152 h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~ 231 (330)
T 2hes_X 152 HSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD 231 (330)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEE
T ss_pred CCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCC
Confidence 9999999999999999999999999999999876 678889999999999999764 7999999999999998765
Q ss_pred --------eeeEEeec-CCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEE-eecccCc-eEEEE--ec--CC
Q 001039 1037 --------TCDAVLAC-HAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVK-NVTIHSS-AILSI--NA--GD 1101 (1179)
Q Consensus 1037 --------~~~~~~~~-h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~~~~h~~-~i~si--s~--dg 1101 (1179)
.+...+.. |...|++++|++++ +|++++.||.|++||..++. ..... ...+|.. .|.++ +| ++
T Consensus 232 ~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~-~~~~~~~~~~h~~~~v~~v~~~~~~~~ 309 (330)
T 2hes_X 232 DEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGE-WKVFAKRALCHGVYEINVVKWLELNGK 309 (330)
T ss_dssp CTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTE-EEEEEEESCTTTTSCEEEEEEC-----
T ss_pred CccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCc-eEEEeccccccccceEEEEEEecCCCc
Confidence 34455554 89999999999665 89999999999999987632 22332 3356766 66655 56 68
Q ss_pred CEEEEEECCCcEEEEeCC
Q 001039 1102 HWLGIGAADNSMSLFHRP 1119 (1179)
Q Consensus 1102 ~~lasgs~Dg~I~iwd~~ 1119 (1179)
++|++|+.||+|++||+.
T Consensus 310 ~~las~s~Dg~v~~W~~~ 327 (330)
T 2hes_X 310 TILATGGDDGIVNFWSLE 327 (330)
T ss_dssp CCEEEEETTSEEEEEEC-
T ss_pred eEEEEecCCCcEEEEEec
Confidence 999999999999999986
No 44
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3.1e-34 Score=338.31 Aligned_cols=299 Identities=20% Similarity=0.337 Sum_probs=244.6
Q ss_pred ccccCCcceEEEEEccCCCceeeccCc-eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccce
Q 001039 763 EASGIGRSWVQSMFSREASSRSHSFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREV 841 (1179)
Q Consensus 763 ~~~gh~~~i~~~~fSpdg~~las~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~ 841 (1179)
...+|...|.+++|||||+++|+|+.+ +++|++.++.............. ............+...|++++|+
T Consensus 59 ~~~~h~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~v~~v~~s----- 132 (393)
T 1erj_A 59 KSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANK-DPENLNTSSSPSSDLYIRSVCFS----- 132 (393)
T ss_dssp EEEECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEEC-----
T ss_pred EecCCCCEEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCcccccc-ccccccccccCCCceeEEEEEEC-----
Confidence 345799999999999999999999877 99999988762111000000000 00000000111233458999997
Q ss_pred eccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEE--EecCCCEEEEEeCCCcEEEEECCCCeEEEEe
Q 001039 842 WDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLLEEL 919 (1179)
Q Consensus 842 ~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~ 919 (1179)
||+++|++|+.||+|++||+. +......+.+|...|.+ +++++++|++|+.||+|++||+.+++....+
T Consensus 133 -------~dg~~l~s~~~d~~i~iwd~~--~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~ 203 (393)
T 1erj_A 133 -------PDGKFLATGAEDRLIRIWDIE--NRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL 203 (393)
T ss_dssp -------TTSSEEEEEETTSCEEEEETT--TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred -------CCCCEEEEEcCCCeEEEEECC--CCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE
Confidence 899999999999999999976 56677889999999986 4799999999999999999999999988877
Q ss_pred ecCCCcEEEEEEe--CCCEEEEEEcCCeEEEEeCCCCeEEEEe-------ccCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 001039 920 KGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTDTCVATV-------GRCSSAVLCMEYDDSTGILAAGGRDAVANI 990 (1179)
Q Consensus 920 ~~h~~~V~~l~~s--~~~~l~sgs~dg~I~iwd~~~~~~~~~~-------~~~~~~v~~l~~sp~~~~l~sgs~dg~I~i 990 (1179)
. +...+.+++++ ++.++++|+.||+|++||+++++.+..+ .+|...|.+++|+|+++++++|+.||.|++
T Consensus 204 ~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~ 282 (393)
T 1erj_A 204 S-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKL 282 (393)
T ss_dssp E-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred E-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence 6 55679999998 5789999999999999999999887776 468889999999999999999999999999
Q ss_pred EeCCCC------------ceeEEeecCCCCeEEEEEc--CCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEec
Q 001039 991 WDIRAG------------RQMHKFLGHTKWIRSIRMD--RDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSS 1056 (1179)
Q Consensus 991 wD~~~~------------~~~~~~~~~~~~I~sl~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp 1056 (1179)
||+++. .+...+.+|...|.+++++ +.++++|+.||.|++||..+++.+..+.+|.+.|.+++|++
T Consensus 283 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~ 362 (393)
T 1erj_A 283 WNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVAN 362 (393)
T ss_dssp EEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS
T ss_pred EECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecC
Confidence 999763 3456778999999999995 45999999999999999999999999999999999999986
Q ss_pred ------CCCEEEEEeCCCcEEEEEcCC
Q 001039 1057 ------SDRGIITGSSDGLLRFWENDD 1077 (1179)
Q Consensus 1057 ------dg~~l~sgs~Dg~I~iwd~~~ 1077 (1179)
++++|++|+.||+|++|++..
T Consensus 363 ~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 363 GSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp SCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CcCcCCCCCEEEEECCCCcEEECcccc
Confidence 688999999999999999865
No 45
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.4e-34 Score=329.29 Aligned_cols=314 Identities=17% Similarity=0.264 Sum_probs=269.4
Q ss_pred ccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEE--EecCCCEEEEEeCCC
Q 001039 826 HAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQ 903 (1179)
Q Consensus 826 H~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~--~s~d~~~l~sgs~dg 903 (1179)
|.++|.+++|+ |||++++++..++.+..|+.. .........+|...|.+ ++++++++++++ ||
T Consensus 8 ~~~~v~~~~~s------------~dg~~~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg 72 (337)
T 1gxr_A 8 GSKPAYSFHVT------------ADGQMQPVPFPPDALIGPGIP--RHARQINTLNHGEVVCAVTISNPTRHVYTGG-KG 72 (337)
T ss_dssp EEEECCEEEEC------------SSSCEEECCCCTTSSSSTTCC--SEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BS
T ss_pred cCCceeEEEEC------------CCCCEEEeecCCCcEeccccC--CccccceeccCCCceEEEEEecCCcEEEEcC-CC
Confidence 56788999998 899999999988888777754 33333344579888875 589999999999 99
Q ss_pred cEEEEECCCCeE---EEEee--cCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCe--EEEEeccCCCcEEEEEEcCC
Q 001039 904 SVLVWDKQTSQL---LEELK--GHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDT--CVATVGRCSSAVLCMEYDDS 975 (1179)
Q Consensus 904 ~I~iwd~~t~~~---~~~~~--~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~--~~~~~~~~~~~v~~l~~sp~ 975 (1179)
.|++||+.+++. ...+. +|...|.+++|+ +++.+++++.||.|++||+.+++ ....+..|...+.+++|+|+
T Consensus 73 ~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~ 152 (337)
T 1gxr_A 73 CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD 152 (337)
T ss_dssp EEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTT
T ss_pred eEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCC
Confidence 999999987653 23333 789999999999 67889999999999999999887 56677788999999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcC--CEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEE
Q 001039 976 TGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR--DTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVE 1053 (1179)
Q Consensus 976 ~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~ 1053 (1179)
++++++++.||.|++||+++++.+..+.+|...+.+++|++ +.+++++.||.|++||+++++....+. +...+.+++
T Consensus 153 ~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~ 231 (337)
T 1gxr_A 153 SKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLG 231 (337)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEE
T ss_pred CCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEE
Confidence 99999999999999999999999999999999999999954 599999999999999999999888775 788999999
Q ss_pred EecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEE--ecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCC
Q 001039 1054 YSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGS 1131 (1179)
Q Consensus 1054 ~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~si--s~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~ 1131 (1179)
|+|+++++++++.||.|++||+.+.. ...+..|...+.++ +++++++++++.||.|++||+.+.+
T Consensus 232 ~s~~~~~l~~~~~~~~i~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~--------- 298 (337)
T 1gxr_A 232 YCPTGEWLAVGMESSNVEVLHVNKPD----KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA--------- 298 (337)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTSSC----EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC---------
T ss_pred ECCCCCEEEEEcCCCcEEEEECCCCC----eEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCe---------
Confidence 99999999999999999999998843 23556788888665 7899999999999999999997431
Q ss_pred ccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001039 1132 KMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEA 1175 (1179)
Q Consensus 1132 ~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv 1175 (1179)
.. ....|...|++++|+|++++|++++.||.|++|++
T Consensus 299 ------~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 299 ------SI-FQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp ------EE-EEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred ------EE-EEecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 12 12357889999999999999999999999999997
No 46
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.4e-34 Score=327.26 Aligned_cols=293 Identities=17% Similarity=0.313 Sum_probs=236.0
Q ss_pred ceeEEEeccccccEEEEecCCCEEEEEeCCCcEEEEECCCC--eEEEEe-ec-CCCcEEEEEEe-CCCEEEEEEcCCeEE
Q 001039 873 SELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTS--QLLEEL-KG-HDAQVSCVRML-SGERVLTASHDGTVK 947 (1179)
Q Consensus 873 ~~~~~~l~~h~~~v~~~s~d~~~l~sgs~dg~I~iwd~~t~--~~~~~~-~~-h~~~V~~l~~s-~~~~l~sgs~dg~I~ 947 (1179)
..+...+.+|...|.++..++.+|++|+.||+|++||+.++ +....+ .+ |...|.+++|+ ++.++++|+.|++|+
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~ 83 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVS 83 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred cccceeeccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 45667899999999988665669999999999999999875 455566 44 99999999999 688999999999999
Q ss_pred EEeCCC-------CeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----ceeEEeecCCCCeEEEEEcC
Q 001039 948 MWDVRT-------DTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAG----RQMHKFLGHTKWIRSIRMDR 1016 (1179)
Q Consensus 948 iwd~~~-------~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~----~~~~~~~~~~~~I~sl~~~~ 1016 (1179)
+||+.. .+.+..+.+|...|.+++|+|++++|++|+.|+.|++||++.. +.+..+.+|...|.+++|++
T Consensus 84 iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p 163 (330)
T 2hes_X 84 IWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP 163 (330)
T ss_dssp EEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS
T ss_pred EEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC
Confidence 999853 4567788899999999999999999999999999999999532 46777889999999999965
Q ss_pred --CEEEEEeCCCcEEEEEccCC--eeeEEeecCCcCEEEEEEecC--CCEEEEEeCCCcEEEEEcCCCCc-----ceEEE
Q 001039 1017 --DTVITGSDDWTARMWSISRG--TCDAVLACHAGPVQCVEYSSS--DRGIITGSSDGLLRFWENDDAGG-----IKCVK 1085 (1179)
Q Consensus 1017 --~~l~sgs~dg~I~iwd~~~~--~~~~~~~~h~~~V~~l~~spd--g~~l~sgs~Dg~I~iwd~~~~~~-----~~~~~ 1085 (1179)
+++++|+.|++|++||..++ +++..+.+|.+.|++++|+|+ +.++++|+.|++|++||+..... ..+..
T Consensus 164 ~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~ 243 (330)
T 2hes_X 164 SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEA 243 (330)
T ss_dssp SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEee
Confidence 59999999999999999876 678889999999999999998 77999999999999999875321 13444
Q ss_pred eecc-cCceEEEEec-CCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceee-eecCCCcc-cEEEEEEcC--CCC
Q 001039 1086 NVTI-HSSAILSINA-GDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLY-RTPQKTVA-VVRCIASDL--ERK 1159 (1179)
Q Consensus 1086 ~~~~-h~~~i~sis~-dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~-~~~~~h~~-~V~~v~fsp--dg~ 1159 (1179)
.+.. |...|.++.. .+.+|++|+.||.|++||..++ .|+.. ....+|.. .|++++|+| +++
T Consensus 244 ~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~-------------~~~~~~~~~~~h~~~~v~~v~~~~~~~~~ 310 (330)
T 2hes_X 244 ILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDG-------------EWKVFAKRALCHGVYEINVVKWLELNGKT 310 (330)
T ss_dssp ECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETT-------------EEEEEEEESCTTTTSCEEEEEEC-----C
T ss_pred ecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCC-------------ceEEEeccccccccceEEEEEEecCCCce
Confidence 4544 8888877742 3458999999999999997622 11222 23467877 899999999 789
Q ss_pred EEEEEeCCCcEEEEECCCC
Q 001039 1160 RICSGGRNGLLRLWEATIN 1178 (1179)
Q Consensus 1160 ~Lasgs~Dg~I~vWdv~tg 1178 (1179)
+|||||.||+|++|++++.
T Consensus 311 ~las~s~Dg~v~~W~~~~~ 329 (330)
T 2hes_X 311 ILATGGDDGIVNFWSLEKA 329 (330)
T ss_dssp CEEEEETTSEEEEEEC---
T ss_pred EEEEecCCCcEEEEEeccC
Confidence 9999999999999999764
No 47
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.1e-33 Score=323.93 Aligned_cols=314 Identities=17% Similarity=0.312 Sum_probs=266.6
Q ss_pred CCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceecc
Q 001039 767 IGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDL 844 (1179)
Q Consensus 767 h~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~ 844 (1179)
|...+.+++|||||++++++..+ +..|...... ......+|.+.|++++|+
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~h~~~v~~~~~~-------- 60 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHA-------------------RQINTLNHGEVVCAVTIS-------- 60 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEE-------------------EEEEEECCSSCCCEEEEC--------
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCcc-------------------ccceeccCCCceEEEEEe--------
Confidence 34678889999999999888766 6666544332 333445899999999998
Q ss_pred ccccCCCCEEEEEeCCCcEEEEcCCCCCc-eeEEEec--cccccEEE--EecCCCEEEEEeCCCcEEEEECCCCe--EEE
Q 001039 845 VGDREDAGFFISGSTDCLVKIWDPSLRGS-ELRATLK--GHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQ--LLE 917 (1179)
Q Consensus 845 ~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~-~~~~~l~--~h~~~v~~--~s~d~~~l~sgs~dg~I~iwd~~t~~--~~~ 917 (1179)
++++++++++ ||.|++||+..... .....+. +|...+.+ ++++++++++++.||.|++||+.+++ ...
T Consensus 61 ----~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 135 (337)
T 1gxr_A 61 ----NPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA 135 (337)
T ss_dssp ----SSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEE
T ss_pred ----cCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceee
Confidence 8999999999 99999999874321 1223333 78888885 58999999999999999999999887 667
Q ss_pred EeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 001039 918 ELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAG 996 (1179)
Q Consensus 918 ~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~ 996 (1179)
.+..|...+.+++|+ +++.+++++.||.|++||+++++.+..+..|...+.+++|+|+++.+++++.||.|++||++++
T Consensus 136 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 215 (337)
T 1gxr_A 136 ELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG 215 (337)
T ss_dssp EEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred ecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCC
Confidence 788999999999999 6789999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEeecCCCCeEEEEEcC--CEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEE
Q 001039 997 RQMHKFLGHTKWIRSIRMDR--DTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWE 1074 (1179)
Q Consensus 997 ~~~~~~~~~~~~I~sl~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd 1074 (1179)
+.+..+ .+...+.++++++ +.+++++.||.|++||+++++.. .+..|...|++++|+|+++++++++.||.|++||
T Consensus 216 ~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 293 (337)
T 1gxr_A 216 RQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293 (337)
T ss_dssp EEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ceEeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEE
Confidence 888776 5778899999954 59999999999999999988754 5677999999999999999999999999999999
Q ss_pred cCCCCcceEEEeecccCceEEEE--ecCCCEEEEEECCCcEEEEeC
Q 001039 1075 NDDAGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHR 1118 (1179)
Q Consensus 1075 ~~~~~~~~~~~~~~~h~~~i~si--s~dg~~lasgs~Dg~I~iwd~ 1118 (1179)
+.++. .+.. ..|...+.++ ++++++|++|+.||.|++|++
T Consensus 294 ~~~~~---~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 294 TPYGA---SIFQ-SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp TTTCC---EEEE-EECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCCCe---EEEE-ecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 99844 2222 3466666554 799999999999999999996
No 48
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.2e-33 Score=331.03 Aligned_cols=280 Identities=20% Similarity=0.371 Sum_probs=242.7
Q ss_pred cccccEEE--EecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCC------------------cEEEEEEe-CCCEEEE
Q 001039 881 GHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDA------------------QVSCVRML-SGERVLT 939 (1179)
Q Consensus 881 ~h~~~v~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~------------------~V~~l~~s-~~~~l~s 939 (1179)
+|...|.+ |+|+|++|++|+ ++++++|++.+++.+..+..+.. .|.+++|+ +++++++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 68888875 589999999976 78999999999998888765542 48999999 6889999
Q ss_pred EEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcC---
Q 001039 940 ASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR--- 1016 (1179)
Q Consensus 940 gs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~--- 1016 (1179)
|+.||+|++||+.+++.+..+.+|...|.+++|+|+++.+++|+.|+.|++||+++++....+. +...+.++++++
T Consensus 141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~ 219 (393)
T 1erj_A 141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDG 219 (393)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTC
T ss_pred EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCC
Confidence 9999999999999999999999999999999999999999999999999999999998887774 556788999854
Q ss_pred CEEEEEeCCCcEEEEEccCCeeeEEe-------ecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCc---------
Q 001039 1017 DTVITGSDDWTARMWSISRGTCDAVL-------ACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGG--------- 1080 (1179)
Q Consensus 1017 ~~l~sgs~dg~I~iwd~~~~~~~~~~-------~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~--------- 1080 (1179)
+++++|+.||.|++||+++++.+..+ .+|...|++++|+|+|++|++|+.||.|++||+.+...
T Consensus 220 ~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~ 299 (393)
T 1erj_A 220 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS 299 (393)
T ss_dssp CEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------------
T ss_pred CEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCC
Confidence 59999999999999999999887776 57899999999999999999999999999999976321
Q ss_pred ceEEEeecccCceEEEE--ecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcC--
Q 001039 1081 IKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDL-- 1156 (1179)
Q Consensus 1081 ~~~~~~~~~h~~~i~si--s~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fsp-- 1156 (1179)
..+...+.+|...|.++ ++++.+|++|+.||.|++||+.+ + +.+..+.+|.+.|.+++|++
T Consensus 300 ~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~---------~------~~~~~l~~h~~~v~~v~~~~~~ 364 (393)
T 1erj_A 300 GTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS---------G------NPLLMLQGHRNSVISVAVANGS 364 (393)
T ss_dssp -CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTT---------C------CEEEEEECCSSCEEEEEECSSC
T ss_pred CcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCC---------C------eEEEEECCCCCCEEEEEecCCc
Confidence 23556677898888766 68999999999999999999873 3 45667789999999999986
Q ss_pred ----CCCEEEEEeCCCcEEEEECCC
Q 001039 1157 ----ERKRICSGGRNGLLRLWEATI 1177 (1179)
Q Consensus 1157 ----dg~~Lasgs~Dg~I~vWdv~t 1177 (1179)
++++|||||.||+|++|++.+
T Consensus 365 ~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 365 SLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp TTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CcCCCCCEEEEECCCCcEEECcccc
Confidence 688999999999999999865
No 49
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.2e-32 Score=331.81 Aligned_cols=316 Identities=23% Similarity=0.414 Sum_probs=269.2
Q ss_pred ceEEEecccCce-EEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEE--ecCCCE
Q 001039 819 NIRIIRGHAGAI-TALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDRGK 895 (1179)
Q Consensus 819 ~~~~l~gH~~~V-~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~--s~d~~~ 895 (1179)
....+.+|.+.| +++.+ ++++|++|+.||+|++||+. ..+....+.+|...|.++ ++++ .
T Consensus 113 ~~~~l~~h~~~v~~~~~~--------------~~~~l~sgs~dg~i~vwd~~--~~~~~~~~~~h~~~V~~l~~~~~~-~ 175 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF--------------EDNYVITGADDKMIRVYDSI--NKKFLLQLSGHDGGVWALKYAHGG-I 175 (464)
T ss_dssp EEEEEECCSSSCEEEEEE--------------ETTEEEEEETTSCEEEEETT--TTEEEEEECCCSSCEEEEEECSTT-E
T ss_pred ceEEEcCCCCCcEEEEEE--------------CCCEEEEEcCCCcEEEEECC--CCcEEEEEeCCCcCEEEEEEcCCC-E
Confidence 567899999885 55554 47899999999999999976 566778899999999976 4555 9
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe---CCCEEEEEEcCCeEEEEeCCCCeE----------------
Q 001039 896 VVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML---SGERVLTASHDGTVKMWDVRTDTC---------------- 956 (1179)
Q Consensus 896 l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s---~~~~l~sgs~dg~I~iwd~~~~~~---------------- 956 (1179)
+++|+.||+|++||+.+++.+..+.+|...|.+++|+ ++..+++|+.||+|++||+.++..
T Consensus 176 l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 255 (464)
T 3v7d_B 176 LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHT 255 (464)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESC
T ss_pred EEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeec
Confidence 9999999999999999999999999999999999998 457899999999999999987752
Q ss_pred -------EEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcC--CEEEEEeCCCc
Q 001039 957 -------VATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR--DTVITGSDDWT 1027 (1179)
Q Consensus 957 -------~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~--~~l~sgs~dg~ 1027 (1179)
...+.+|...+.++ +++++++++|+.||.|++||+++++.+..+.+|...|.++++++ +.+++|+.||.
T Consensus 256 ~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~ 333 (464)
T 3v7d_B 256 PEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT 333 (464)
T ss_dssp GGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred cCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCc
Confidence 45667788888877 57789999999999999999999999999999999999999965 59999999999
Q ss_pred EEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEEecCCCEEEEE
Q 001039 1028 ARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIG 1107 (1179)
Q Consensus 1028 I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~lasg 1107 (1179)
|++||+++++.+..+.+|...|.+++|+ ++++++|+.||.|++||+.+.. ........+...+.+++++++++++|
T Consensus 334 i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~ 409 (464)
T 3v7d_B 334 IRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS--RKFSYHHTNLSAITTFYVSDNILVSG 409 (464)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC--EEEEEECTTCCCEEEEEECSSEEEEE
T ss_pred EEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCc--eeeeecCCCCccEEEEEeCCCEEEEe
Confidence 9999999999999999999999999997 6899999999999999999843 22222244556678889999999999
Q ss_pred ECCCcEEEEeCCCCCcCcccCCCCccccceeeee-cCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001039 1108 AADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRT-PQKTVAVVRCIASDLERKRICSGGRNGLLRLWE 1174 (1179)
Q Consensus 1108 s~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~-~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWd 1174 (1179)
+ ||.|++||+.++ +++.. ...|.+.|++++|+ ++.++++++.||.+.+|-
T Consensus 410 ~-dg~i~iwd~~~g---------------~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 410 S-ENQFNIYNLRSG---------------KLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp E-TTEEEEEETTTC---------------CEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred c-CCeEEEEECCCC---------------cEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 8 899999999843 34433 56788999999997 445566667787666554
No 50
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.9e-33 Score=337.20 Aligned_cols=314 Identities=23% Similarity=0.362 Sum_probs=272.0
Q ss_pred cccccCCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeeccc
Q 001039 762 AEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKR 839 (1179)
Q Consensus 762 ~~~~gh~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~ 839 (1179)
..+.+|...++. +++++++++++|+.| |++||+.+++ .+..+.+|.+.|++++|+
T Consensus 115 ~~l~~h~~~v~~-~~~~~~~~l~sgs~dg~i~vwd~~~~~-------------------~~~~~~~h~~~V~~l~~~--- 171 (464)
T 3v7d_B 115 TTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKK-------------------FLLQLSGHDGGVWALKYA--- 171 (464)
T ss_dssp EEEECCSSSCEE-EEEEETTEEEEEETTSCEEEEETTTTE-------------------EEEEECCCSSCEEEEEEC---
T ss_pred EEEcCCCCCcEE-EEEECCCEEEEEcCCCcEEEEECCCCc-------------------EEEEEeCCCcCEEEEEEc---
Confidence 346788888654 344477899999998 9999998877 788899999999999997
Q ss_pred ceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEE--e--cCCCEEEEEeCCCcEEEEECCCCe-
Q 001039 840 EVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--N--SDRGKVVSGSDDQSVLVWDKQTSQ- 914 (1179)
Q Consensus 840 ~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~--s--~d~~~l~sgs~dg~I~iwd~~t~~- 914 (1179)
+++ ++++|+.||+|++||+. .......+.+|...|.++ + +++.++++|+.||+|++||+.+++
T Consensus 172 ---------~~~-~l~s~s~dg~i~vwd~~--~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~ 239 (464)
T 3v7d_B 172 ---------HGG-ILVSGSTDRTVRVWDIK--KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS 239 (464)
T ss_dssp ---------STT-EEEEEETTSCEEEEETT--TTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCC
T ss_pred ---------CCC-EEEEEeCCCCEEEEECC--CCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcc
Confidence 556 99999999999999986 556778899999999865 4 577999999999999999998765
Q ss_pred ----------------------EEEEeecCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEE
Q 001039 915 ----------------------LLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEY 972 (1179)
Q Consensus 915 ----------------------~~~~~~~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~ 972 (1179)
.+..+.+|...+.++.. +++.+++|+.||.|++||+++++.+..+.+|...|.+++|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 318 (464)
T 3v7d_B 240 VPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG-HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIY 318 (464)
T ss_dssp C------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEE-ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred cccccccCCcceEeeccCCCeEEEEEccCccceEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEE
Confidence 35677889999988853 5789999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcCCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEE
Q 001039 973 DDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCV 1052 (1179)
Q Consensus 973 sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l 1052 (1179)
+|+++.+++|+.||.|++||+++++.+..+.+|...|.+++++++.+++|+.||+|++||++++....... +...+..+
T Consensus 319 ~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~ 397 (464)
T 3v7d_B 319 DHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAIT 397 (464)
T ss_dssp ETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEE
T ss_pred cCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEE
Confidence 99999999999999999999999999999999999999999999999999999999999999987766654 67788889
Q ss_pred EEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEe-ecccCceEEEEecCCCEEEEEE-CCCcEEEE
Q 001039 1053 EYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKN-VTIHSSAILSINAGDHWLGIGA-ADNSMSLF 1116 (1179)
Q Consensus 1053 ~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~-~~~h~~~i~sis~dg~~lasgs-~Dg~I~iw 1116 (1179)
+|+++++++++|+ ||.|++||+.++ +.+.. ...|...|.+++++++.+++++ .||.+.+|
T Consensus 398 ~~~~~~~~l~~~~-dg~i~iwd~~~g---~~~~~~~~~~~~~v~~v~~~~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 398 TFYVSDNILVSGS-ENQFNIYNLRSG---KLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp EEEECSSEEEEEE-TTEEEEEETTTC---CEEESCTTTTCSEEEEEEEETTEEEEEEEETTEEEEE
T ss_pred EEEeCCCEEEEec-CCeEEEEECCCC---cEEehhhccCCCcEEEEEecCCEEEEEEEeCCeEEEE
Confidence 9999999999998 899999999984 45543 5678899999987777666554 55555444
No 51
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-35 Score=350.15 Aligned_cols=324 Identities=12% Similarity=0.162 Sum_probs=271.6
Q ss_pred CcceEEEEEccCCC-ceeec----------cCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEE
Q 001039 768 GRSWVQSMFSREAS-SRSHS----------FSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALH 834 (1179)
Q Consensus 768 ~~~i~~~~fSpdg~-~las~----------~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~ 834 (1179)
...+.+++|||||+ +++++ +.| |++||+.++.... .+.. ..|.+.|++++
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~----------------~~~~-~~~~~~v~~~~ 74 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEK----------------PIAS-LQVDSKFNDLD 74 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCS----------------CSCC-CCCSSCEEEEE
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCc----------------EEEE-EecCCceEEEE
Confidence 35677789999997 88888 666 9999998765210 1222 25889999999
Q ss_pred eecccceeccccccCCCCEEEEEeCCCcEEEEcCCC--CCceeEEEeccccccEEE--EecC-CCEEEEEeCCCcEEEEE
Q 001039 835 CVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSL--RGSELRATLKGHTRTVRA--INSD-RGKVVSGSDDQSVLVWD 909 (1179)
Q Consensus 835 ~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~--~~~~~~~~l~~h~~~v~~--~s~d-~~~l~sgs~dg~I~iwd 909 (1179)
|+ +++++|++|+.||.|++||+.. .+......+.+|...|.+ ++++ ++++++++.||+|++||
T Consensus 75 ~s------------~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd 142 (416)
T 2pm9_A 75 WS------------HNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWD 142 (416)
T ss_dssp EC------------SSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCB
T ss_pred EC------------CCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEE
Confidence 98 8999999999999999999873 123467888999999886 4787 89999999999999999
Q ss_pred CCCCe------EEE---EeecCCCcEEEEEEeC--CCEEEEEEcCCeEEEEeCCCCeEEEEeccC------CCcEEEEEE
Q 001039 910 KQTSQ------LLE---ELKGHDAQVSCVRMLS--GERVLTASHDGTVKMWDVRTDTCVATVGRC------SSAVLCMEY 972 (1179)
Q Consensus 910 ~~t~~------~~~---~~~~h~~~V~~l~~s~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~------~~~v~~l~~ 972 (1179)
+.+++ ... ....|...|.+++|++ +..+++++.||.|++||+++++.+..+..+ ...+.+++|
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 222 (416)
T 2pm9_A 143 MNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEW 222 (416)
T ss_dssp TTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEE
T ss_pred CCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEE
Confidence 99886 332 3467899999999994 578999999999999999999999888776 788999999
Q ss_pred cCCC-CEEEEEeCCC---eEEEEeCCCC-ceeEEee-cCCCCeEEEEEcC---CEEEEEeCCCcEEEEEccCCeeeEEee
Q 001039 973 DDST-GILAAGGRDA---VANIWDIRAG-RQMHKFL-GHTKWIRSIRMDR---DTVITGSDDWTARMWSISRGTCDAVLA 1043 (1179)
Q Consensus 973 sp~~-~~l~sgs~dg---~I~iwD~~~~-~~~~~~~-~~~~~I~sl~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~ 1043 (1179)
+|++ .++++++.|+ .|++||++++ +.+..+. +|...|.+++|++ +++++++.||.|++||+++++.+..+.
T Consensus 223 ~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~ 302 (416)
T 2pm9_A 223 HPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFP 302 (416)
T ss_dssp CSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEE
T ss_pred CCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeec
Confidence 9997 6899999998 9999999987 6677777 8999999999964 599999999999999999999999999
Q ss_pred cCCcCEEEEEEecCC-CEEEEEeCCCcEEEEEcCCCCcceEEEe--------------------------------eccc
Q 001039 1044 CHAGPVQCVEYSSSD-RGIITGSSDGLLRFWENDDAGGIKCVKN--------------------------------VTIH 1090 (1179)
Q Consensus 1044 ~h~~~V~~l~~spdg-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~--------------------------------~~~h 1090 (1179)
+|...|++++|+|++ .++++++.||.|++||+.+......... ...|
T Consensus 303 ~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (416)
T 2pm9_A 303 ARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWY 382 (416)
T ss_dssp CSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTT
T ss_pred CCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccc
Confidence 999999999999999 8999999999999999987542211100 0113
Q ss_pred CceE--EEEecCCCEEEEEECCCcEEEEeCCC
Q 001039 1091 SSAI--LSINAGDHWLGIGAADNSMSLFHRPQ 1120 (1179)
Q Consensus 1091 ~~~i--~sis~dg~~lasgs~Dg~I~iwd~~~ 1120 (1179)
...+ .+++|+|++|++|+.||.|+||++.+
T Consensus 383 ~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 383 GEPSPAAHWAFGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp CCCSCCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred cCCccceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence 3333 67799999999999999999999874
No 52
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.7e-33 Score=321.58 Aligned_cols=286 Identities=20% Similarity=0.358 Sum_probs=246.4
Q ss_pred cccCCcceEEEEEccC-CCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccc
Q 001039 764 ASGIGRSWVQSMFSRE-ASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKRE 840 (1179)
Q Consensus 764 ~~gh~~~i~~~~fSpd-g~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~ 840 (1179)
+.||...|.+++|+|+ +++||||+.| |++||+.+.+.. ...+.+.+.+|.+.|++++|+
T Consensus 34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~--------------~~~~~~~l~~h~~~V~~~~~s---- 95 (340)
T 4aow_A 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN--------------YGIPQRALRGHSHFVSDVVIS---- 95 (340)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC--------------SEEEEEEECCCSSCEEEEEEC----
T ss_pred ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc--------------cceeeEEEeCCCCCEEEEEEC----
Confidence 5799999999999998 6899999998 999999875521 122567899999999999998
Q ss_pred eeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEE--EEecCCCEEEEEeCCCcEEEEECCCCeEE-E
Q 001039 841 VWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKVVSGSDDQSVLVWDKQTSQLL-E 917 (1179)
Q Consensus 841 ~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~--~~s~d~~~l~sgs~dg~I~iwd~~t~~~~-~ 917 (1179)
|++++|++|+.||.|++|+.. ..........+...+. .+++++..+++|+.||.+++||....... .
T Consensus 96 --------~dg~~l~s~~~d~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~ 165 (340)
T 4aow_A 96 --------SDGQFALSGSWDGTLRLWDLT--TGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTV 165 (340)
T ss_dssp --------TTSSEEEEEETTSEEEEEETT--TTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEE
T ss_pred --------CCCCEEEEEcccccceEEeec--ccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEE
Confidence 899999999999999999976 3444445555555555 45889999999999999999999876543 3
Q ss_pred EeecCCCcEEEEEEeC---CCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 001039 918 ELKGHDAQVSCVRMLS---GERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIR 994 (1179)
Q Consensus 918 ~~~~h~~~V~~l~~s~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~ 994 (1179)
...+|...+.+++|+. ...+++++.|+.|++||+++++.+..+.+|.+.|.+++|+|+++++++|+.||.|++||++
T Consensus 166 ~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~ 245 (340)
T 4aow_A 166 QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN 245 (340)
T ss_dssp CSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETT
T ss_pred EeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEec
Confidence 4578899999999982 4578899999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEeecCCCCeEEEEEcCC-EEEEEeCCCcEEEEEccCCeeeEEee---------cCCcCEEEEEEecCCCEEEEE
Q 001039 995 AGRQMHKFLGHTKWIRSIRMDRD-TVITGSDDWTARMWSISRGTCDAVLA---------CHAGPVQCVEYSSSDRGIITG 1064 (1179)
Q Consensus 995 ~~~~~~~~~~~~~~I~sl~~~~~-~l~sgs~dg~I~iwd~~~~~~~~~~~---------~h~~~V~~l~~spdg~~l~sg 1064 (1179)
+++.+..+..+ ..+.++.++++ .+++++.|+.|++||++++.....+. +|...|++++|+|+|++|++|
T Consensus 246 ~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sg 324 (340)
T 4aow_A 246 EGKHLYTLDGG-DIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAG 324 (340)
T ss_dssp TTEEEEEEECS-SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEE
T ss_pred cCceeeeecCC-ceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEE
Confidence 99998888654 57999999765 77888889999999999887766543 588899999999999999999
Q ss_pred eCCCcEEEEEcCCC
Q 001039 1065 SSDGLLRFWENDDA 1078 (1179)
Q Consensus 1065 s~Dg~I~iwd~~~~ 1078 (1179)
+.||.|++||+.++
T Consensus 325 s~Dg~v~iW~~~tG 338 (340)
T 4aow_A 325 YTDNLVRVWQVTIG 338 (340)
T ss_dssp ETTSCEEEEEEEC-
T ss_pred eCCCEEEEEeCCCc
Confidence 99999999999884
No 53
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.7e-33 Score=325.53 Aligned_cols=286 Identities=17% Similarity=0.281 Sum_probs=239.0
Q ss_pred ccccCCcceEEEEE-----cc-CCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEE
Q 001039 763 EASGIGRSWVQSMF-----SR-EASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALH 834 (1179)
Q Consensus 763 ~~~gh~~~i~~~~f-----Sp-dg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~ 834 (1179)
.+.||...|.+++| ++ ||++|++|+.| |++||+.+....+ ........+.+|.+.|++++
T Consensus 16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~------------~~~~~~~~l~~h~~~V~~~~ 83 (343)
T 2xzm_R 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNG------------YFGIPHKALTGHNHFVSDLA 83 (343)
T ss_dssp EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSS------------BSEEEEEEECCCSSCEEEEE
T ss_pred eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccc------------ccccccchhccCCCceEEEE
Confidence 46789999999999 77 99999999999 9999997654211 11225678999999999999
Q ss_pred eecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEE--EecCCCEEEEEeCCCcEEEEECCC
Q 001039 835 CVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQT 912 (1179)
Q Consensus 835 ~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~--~s~d~~~l~sgs~dg~I~iwd~~t 912 (1179)
|+ +++.++++|+.||+|++||+. .......+.+|...|.+ ++|+++++++|+.||+|++||+..
T Consensus 84 ~~------------~~~~~l~s~s~D~~v~lwd~~--~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~ 149 (343)
T 2xzm_R 84 LS------------QENCFAISSSWDKTLRLWDLR--TGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG 149 (343)
T ss_dssp EC------------SSTTEEEEEETTSEEEEEETT--SSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS
T ss_pred EC------------CCCCEEEEEcCCCcEEEEECC--CCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC
Confidence 98 899999999999999999976 45567789999999985 589999999999999999999984
Q ss_pred CeEEEEee---cCCCcEEEEEEeCC-----------CEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCE
Q 001039 913 SQLLEELK---GHDAQVSCVRMLSG-----------ERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGI 978 (1179)
Q Consensus 913 ~~~~~~~~---~h~~~V~~l~~s~~-----------~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~ 978 (1179)
+...... +|...|.+++|++. .++++++.||+|++|| .+++....+..|...|.+++|+|+|++
T Consensus 150 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~ 227 (343)
T 2xzm_R 150 -ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKY 227 (343)
T ss_dssp -CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSE
T ss_pred -CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCE
Confidence 3434433 78899999999843 6899999999999999 556777788899999999999999999
Q ss_pred EEEEeCCCeEEEEeCCCC-ceeEEeecCCCCeEEEEEcCC-EEEEEeCCCcEEEEEccCCeeeE--Eee-----------
Q 001039 979 LAAGGRDAVANIWDIRAG-RQMHKFLGHTKWIRSIRMDRD-TVITGSDDWTARMWSISRGTCDA--VLA----------- 1043 (1179)
Q Consensus 979 l~sgs~dg~I~iwD~~~~-~~~~~~~~~~~~I~sl~~~~~-~l~sgs~dg~I~iwd~~~~~~~~--~~~----------- 1043 (1179)
|++|+.||.|++||+++. .....+ .+...|.+++|+++ .+++++.|+.|++||+.+++... .+.
T Consensus 228 l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (343)
T 2xzm_R 228 IATGGKDKKLLIWDILNLTYPQREF-DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQK 306 (343)
T ss_dssp EEEEETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBC
T ss_pred EEEEcCCCeEEEEECCCCcccceee-cCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhc
Confidence 999999999999999544 344443 45567999999765 44456678899999998876543 333
Q ss_pred cCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 001039 1044 CHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDD 1077 (1179)
Q Consensus 1044 ~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~ 1077 (1179)
+|...|++++|+|+|++|++|+.||.|++|++.+
T Consensus 307 ~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 307 GKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp CSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred CCCCceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence 6788999999999999999999999999999875
No 54
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-34 Score=341.95 Aligned_cols=336 Identities=16% Similarity=0.223 Sum_probs=259.6
Q ss_pred EEccCCCceeeccCceEeeeCCCCCCCCCCCCCCCCCCCcccccceEEE-ecccCceEEEEeecccceeccccccC-CCC
Q 001039 775 MFSREASSRSHSFSRVRKWTSDAANENGTPRKQDSTAGGKKIQSNIRII-RGHAGAITALHCVTKREVWDLVGDRE-DAG 852 (1179)
Q Consensus 775 ~fSpdg~~las~~~dI~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~gH~~~V~~v~~s~~~~~~~~~~~s~-d~~ 852 (1179)
.|+|+|+.+++++ .|+.. +. .+..+ .+|.+.|++++|+ | +++
T Consensus 34 ~f~~~~~~~~~~~----~w~~~-g~-------------------~~~~~~~~h~~~V~~~~~s------------~~~~~ 77 (437)
T 3gre_A 34 EFGPIQEIVRSPN----MGNLR-GK-------------------LIATLMENEPNSITSSAVS------------PGETP 77 (437)
T ss_dssp GGCCCCCCCCCCC----GGGCC-CC-------------------EEEEECTTTTSCEEEEEEE------------CSSSC
T ss_pred hcCCccccccccc----ccccc-ce-------------------EEeeeccCCCCceEEEEEC------------CCCCC
Confidence 5899999888876 58744 33 57777 8999999999998 7 999
Q ss_pred EEEEEeCCCcEEEEcCCC---CC-ceeEEEeccccccEEEE--ecCCCEEEEEeCCCcEEEEECC---CCeEEEEeec--
Q 001039 853 FFISGSTDCLVKIWDPSL---RG-SELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQ---TSQLLEELKG-- 921 (1179)
Q Consensus 853 ~Lasgs~Dg~I~lWd~~~---~~-~~~~~~l~~h~~~v~~~--s~d~~~l~sgs~dg~I~iwd~~---t~~~~~~~~~-- 921 (1179)
+|++|+.||+|++||+.. .. ......+ +|...|.++ ++++++|++|+.||+|++||+. +++......+
T Consensus 78 ~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 156 (437)
T 3gre_A 78 YLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCEC 156 (437)
T ss_dssp EEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccce
Confidence 999999999999999752 11 1112222 588899864 7899999999999999999994 5554443332
Q ss_pred ----------CCCcEEEEEEe---CCCEEEEEEcCCeEEEEeCCCCeEEEEecc--CCCcEEEEEEcCCCCEEEEEeCCC
Q 001039 922 ----------HDAQVSCVRML---SGERVLTASHDGTVKMWDVRTDTCVATVGR--CSSAVLCMEYDDSTGILAAGGRDA 986 (1179)
Q Consensus 922 ----------h~~~V~~l~~s---~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--~~~~v~~l~~sp~~~~l~sgs~dg 986 (1179)
+...+.++.+. ++..+++|+.||.|++||+++++.+..+.. |...|.+++|+|+++++++|+.||
T Consensus 157 i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg 236 (437)
T 3gre_A 157 IRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRG 236 (437)
T ss_dssp EEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTS
T ss_pred eEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCC
Confidence 45566676643 578899999999999999999999999987 789999999999999999999999
Q ss_pred eEEEEeCCCCceeEEee-cCCCCeEEEEEcCC------EEEEEeCCCcEEEEEccCCeeeEEeec---------------
Q 001039 987 VANIWDIRAGRQMHKFL-GHTKWIRSIRMDRD------TVITGSDDWTARMWSISRGTCDAVLAC--------------- 1044 (1179)
Q Consensus 987 ~I~iwD~~~~~~~~~~~-~~~~~I~sl~~~~~------~l~sgs~dg~I~iwd~~~~~~~~~~~~--------------- 1044 (1179)
.|++||+++++.+..+. .|...|.++++.+. ++++|+.||.|++||++++++...+.+
T Consensus 237 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (437)
T 3gre_A 237 IIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEK 316 (437)
T ss_dssp CEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCS
T ss_pred eEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceeccccc
Confidence 99999999999998886 78889999977543 899999999999999999998887764
Q ss_pred -----------CCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEE-----EecCCCEEEEEE
Q 001039 1045 -----------HAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILS-----INAGDHWLGIGA 1108 (1179)
Q Consensus 1045 -----------h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~s-----is~dg~~lasgs 1108 (1179)
|...|++++|+ ++++|++|+.||.|++||+.++. ....+.+|...... ++++..+++..
T Consensus 317 ~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 391 (437)
T 3gre_A 317 GLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELS---SSKAVISPSRFSDVFIPTQVTANLTMLLRK- 391 (437)
T ss_dssp SGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGG---GCEEEECC--CCCEEEEEEEETTEEEEEEE-
T ss_pred ccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcc---cceEEecccccCceEEEEEeecceEEEEEe-
Confidence 44568889999 78999999999999999999844 34444454332222 23333333332
Q ss_pred CCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCC--CCEEEEEeCCCcEEEEE
Q 001039 1109 ADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLE--RKRICSGGRNGLLRLWE 1174 (1179)
Q Consensus 1109 ~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspd--g~~Lasgs~Dg~I~vWd 1174 (1179)
|+.. .+ ........|...|++++|+++ +.+|+||+.||+|+||+
T Consensus 392 -------~~~~---------~~------~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 392 -------MKRT---------ST------HSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp -------CC----------------------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred -------cccc---------cc------cccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 2211 11 122334579999999999998 88999999999999995
No 55
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-35 Score=355.73 Aligned_cols=334 Identities=13% Similarity=0.081 Sum_probs=238.7
Q ss_pred ccCceEEEEeeccc---------ceecccc-------ccCCCCEEEEEeCCCcEEEEcCCCCCcee--EEEeccccccEE
Q 001039 826 HAGAITALHCVTKR---------EVWDLVG-------DREDAGFFISGSTDCLVKIWDPSLRGSEL--RATLKGHTRTVR 887 (1179)
Q Consensus 826 H~~~V~~v~~s~~~---------~~~~~~~-------~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~--~~~l~~h~~~v~ 887 (1179)
+.+.|++++|+|.. ....+.. .+|+++.+++|+.||+|+|||+....... ...+.+|.+.|.
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~ 211 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW 211 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence 57788888888764 2222211 35677888999999999999976332211 244677888887
Q ss_pred E--EecC------CCEEEEEeCCCcEEEEECCCCeE-----------EEEeecCCCcEEEEEEeCCCEEEEEEcCCeEEE
Q 001039 888 A--INSD------RGKVVSGSDDQSVLVWDKQTSQL-----------LEELKGHDAQVSCVRMLSGERVLTASHDGTVKM 948 (1179)
Q Consensus 888 ~--~s~d------~~~l~sgs~dg~I~iwd~~t~~~-----------~~~~~~h~~~V~~l~~s~~~~l~sgs~dg~I~i 948 (1179)
+ ++|+ +.+|++|+.||+|++||+.+++. ...+.+|...|++++|++++.|++|+.||+|++
T Consensus 212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~l 291 (524)
T 2j04_B 212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAE 291 (524)
T ss_dssp EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEE
T ss_pred EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEE
Confidence 5 5665 57999999999999999987632 246788999999999997789999999999999
Q ss_pred EeCCCCe-EEEEeccCCCcEEEE--EEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEeecCCC--CeEEEEEcCC--EEE
Q 001039 949 WDVRTDT-CVATVGRCSSAVLCM--EYDDST-GILAAGGRDAVANIWDIRAGRQMHKFLGHTK--WIRSIRMDRD--TVI 1020 (1179)
Q Consensus 949 wd~~~~~-~~~~~~~~~~~v~~l--~~sp~~-~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~--~I~sl~~~~~--~l~ 1020 (1179)
||++++. ....+..|...|.++ +|++++ ++|++|+.||+|++||+++++....+.+|.. .|.+++|+++ .++
T Consensus 292 WD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~ 371 (524)
T 2j04_B 292 FDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYI 371 (524)
T ss_dssp EETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEE
T ss_pred EECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEE
Confidence 9999764 455678899999999 568887 8999999999999999999888777777654 5788999764 899
Q ss_pred EEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEee--cccCceEEEE-
Q 001039 1021 TGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNV--TIHSSAILSI- 1097 (1179)
Q Consensus 1021 sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~--~~h~~~i~si- 1097 (1179)
+++.|++|++||++++.+...+.+|.+.|++++|+|+|++|++|+.||+|++||.... ........ ..+...+.++
T Consensus 372 s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~ 450 (524)
T 2j04_B 372 YSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWD 450 (524)
T ss_dssp EECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECB
T ss_pred EeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEec
Confidence 9999999999999999988889999999999999999999999999999999998652 11111100 0111234444
Q ss_pred -ecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCC---EEEEEeCCCcEEEE
Q 001039 1098 -NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERK---RICSGGRNGLLRLW 1173 (1179)
Q Consensus 1098 -s~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~---~Lasgs~Dg~I~vW 1173 (1179)
+|++..+. ... .+.+|+.. .+| .+...+.+|.+.|++|+|+|++. ++|+|+.||+|+||
T Consensus 451 ~sp~g~~~~-~~~--~~~~~~~~--------~~g------~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw 513 (524)
T 2j04_B 451 YSIKDDKYR-IDS--SYEVYPLT--------VND------VSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLE 513 (524)
T ss_dssp CCSSSCEEE-ECC--CCCCCC---------------------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEE
T ss_pred cCCCCCeEE-ccC--Cceecccc--------cCC------cceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEE
Confidence 67777442 212 22233221 012 35566789999999999999964 99999999999999
Q ss_pred ECCC
Q 001039 1174 EATI 1177 (1179)
Q Consensus 1174 dv~t 1177 (1179)
++.-
T Consensus 514 ~l~~ 517 (524)
T 2j04_B 514 YLSL 517 (524)
T ss_dssp ECSC
T ss_pred Eccc
Confidence 9863
No 56
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-32 Score=318.68 Aligned_cols=300 Identities=19% Similarity=0.266 Sum_probs=256.7
Q ss_pred ceEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEE--EecCCCEE
Q 001039 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKV 896 (1179)
Q Consensus 819 ~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~--~s~d~~~l 896 (1179)
....+.+|.+.|++++|+ +++++|++|+.||.|++||+. .......+.+|...|.+ +++++++|
T Consensus 24 ~~~~l~~h~~~v~~~~~s------------~~~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l 89 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYN------------KEGDLLFSCSKDSSASVWYSL--NGERLGTLDGHTGTIWSIDVDCFTKYC 89 (369)
T ss_dssp EEEEEECCSSCEEEEEEC------------TTSCEEEEEESSSCEEEEETT--TCCEEEEECCCSSCEEEEEECTTSSEE
T ss_pred ccEEEEEeeceEEEEEEc------------CCCCEEEEEeCCCEEEEEeCC--CchhhhhhhhcCCcEEEEEEcCCCCEE
Confidence 456799999999999998 899999999999999999976 55677889999999986 47899999
Q ss_pred EEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcC-----CeEEEEeCCCCe-----------EEEE
Q 001039 897 VSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHD-----GTVKMWDVRTDT-----------CVAT 959 (1179)
Q Consensus 897 ~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~d-----g~I~iwd~~~~~-----------~~~~ 959 (1179)
++++.||+|++||+.+++.+..+. +...+.+++|+ ++..+++++.+ |.|.+||+.++. ....
T Consensus 90 ~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~ 168 (369)
T 3zwl_B 90 VTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHK 168 (369)
T ss_dssp EEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeee
Confidence 999999999999999999999888 88899999999 68899999998 999999987653 2333
Q ss_pred eccCCC--cEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-CceeEEeecCCCCeEEEEEc--CCEEEEEeCCCcEEEEEcc
Q 001039 960 VGRCSS--AVLCMEYDDSTGILAAGGRDAVANIWDIRA-GRQMHKFLGHTKWIRSIRMD--RDTVITGSDDWTARMWSIS 1034 (1179)
Q Consensus 960 ~~~~~~--~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~-~~~~~~~~~~~~~I~sl~~~--~~~l~sgs~dg~I~iwd~~ 1034 (1179)
+..+.. .+.+++|+|+++++++++.||.|++||+++ ++.+..+..|...|.+++|+ ++.+++++.||.|++||++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~ 248 (369)
T 3zwl_B 169 IITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVS 248 (369)
T ss_dssp EECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred ccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECC
Confidence 444555 899999999999999999999999999999 78888899999999999995 4589999999999999999
Q ss_pred CCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEEecCCCEEEEEECCCcEE
Q 001039 1035 RGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIGAADNSMS 1114 (1179)
Q Consensus 1035 ~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~lasgs~Dg~I~ 1114 (1179)
+++....+. +...+.+++|+|+++++++++.++...+|..... .....++
T Consensus 249 ~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----------------------------~~~~~i~ 298 (369)
T 3zwl_B 249 TLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSAN-----------------------------EGKFEAR 298 (369)
T ss_dssp TCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC------------------------------------------CEEE
T ss_pred CCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecC-----------------------------CCcceeE
Confidence 999988887 7889999999999999999999998877765441 1234689
Q ss_pred EEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001039 1115 LFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATIN 1178 (1179)
Q Consensus 1115 iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~tg 1178 (1179)
+||..+. +....+.+|.+.|++++|+|||++|++|+.||.|++|+++++
T Consensus 299 ~~d~~~~---------------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 299 FYHKIFE---------------EEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp EEETTTC---------------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred EEecCCC---------------cchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 9998733 456667789999999999999999999999999999998753
No 57
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.9e-32 Score=354.11 Aligned_cols=340 Identities=17% Similarity=0.303 Sum_probs=282.8
Q ss_pred ceEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEE--EecCCCEE
Q 001039 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKV 896 (1179)
Q Consensus 819 ~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~--~s~d~~~l 896 (1179)
..+.+.+|.+.|++++|+ |++++|++|+.||+|++||+. .......+.+|...|.+ +++++++|
T Consensus 5 ~~~~~~~h~~~v~~i~~s------------p~~~~la~~~~~g~v~iwd~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l 70 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFH------------PTEPWVLTTLYSGRVEIWNYE--TQVEVRSIQVTETPVRAGKFIARKNWI 70 (814)
T ss_dssp CEEEEEEECSCEEEEEEC------------SSSSEEEEEETTSEEEEEETT--TTEEEEEEECCSSCEEEEEEEGGGTEE
T ss_pred cceeeecCCCceEEEEEC------------CCCCEEEEEeCCCEEEEEECC--CCceEEEEecCCCcEEEEEEeCCCCEE
Confidence 567899999999999998 899999999999999999976 56677888899999985 58999999
Q ss_pred EEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCC-eEEEEeccCCCcEEEEEEcC
Q 001039 897 VSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTD-TCVATVGRCSSAVLCMEYDD 974 (1179)
Q Consensus 897 ~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~-~~~~~~~~~~~~v~~l~~sp 974 (1179)
++|+.||.|++||+.+++.+..+.+|...|++++|+ ++..+++|+.||.|++||+.++ .....+..|...|.+++|+|
T Consensus 71 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p 150 (814)
T 3mkq_A 71 IVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNP 150 (814)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEET
T ss_pred EEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEc
Confidence 999999999999999999999999999999999999 6789999999999999999987 67778888999999999999
Q ss_pred -CCCEEEEEeCCCeEEEEeCCCCceeEEeecCC-CCeEEEEEc----CCEEEEEeCCCcEEEEEccCCeeeEEeecCCcC
Q 001039 975 -STGILAAGGRDAVANIWDIRAGRQMHKFLGHT-KWIRSIRMD----RDTVITGSDDWTARMWSISRGTCDAVLACHAGP 1048 (1179)
Q Consensus 975 -~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~-~~I~sl~~~----~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~ 1048 (1179)
+++.+++++.||.|++||+++++....+..+. ..+.+++|+ +..+++|+.||.|++||+.+++....+.+|.+.
T Consensus 151 ~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~ 230 (814)
T 3mkq_A 151 KDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSN 230 (814)
T ss_dssp TEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCC
Confidence 88999999999999999999988887776655 889999994 459999999999999999999999999999999
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEE--ecCCC--EEEEEECCCcEEEEeCCCCCc-
Q 001039 1049 VQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSI--NAGDH--WLGIGAADNSMSLFHRPQERL- 1123 (1179)
Q Consensus 1049 V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~si--s~dg~--~lasgs~Dg~I~iwd~~~~~~- 1123 (1179)
|++++|+|+++++++|+.||.|++||+.+ ......+..|...+.++ +|++. ++++| .|+.+.+|++.....
T Consensus 231 v~~~~~~~~~~~l~~~~~dg~v~vwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 306 (814)
T 3mkq_A 231 VSFAVFHPTLPIIISGSEDGTLKIWNSST---YKVEKTLNVGLERSWCIATHPTGRKNYIASG-FDNGFTVLSLGNDEPT 306 (814)
T ss_dssp EEEEEECSSSSEEEEEETTSCEEEEETTT---CSEEEEECCSSSSEEEEEECTTCGGGEEEEE-ETTEEEEEECSCCSCC
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCC---CcEEEEeecCCCcEEEEEEccCCCceEEEEE-eCCCEEEEEcCCCCce
Confidence 99999999999999999999999999988 45666777777777666 67776 45555 466788888764321
Q ss_pred CcccCCCCccc-----------------------c----ceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001039 1124 GGFSGTGSKMS-----------------------G----WQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEAT 1176 (1179)
Q Consensus 1124 ~~~~~~g~~~~-----------------------~----~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~ 1176 (1179)
..+.++|..+. . .........+...+++++|+|||+++++++ ||.+.+|++.
T Consensus 307 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~ 385 (814)
T 3mkq_A 307 LSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTAL 385 (814)
T ss_dssp EEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETT
T ss_pred eEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECc
Confidence 11111111000 0 000112234555678888888888888877 7888888865
Q ss_pred C
Q 001039 1177 I 1177 (1179)
Q Consensus 1177 t 1177 (1179)
.
T Consensus 386 ~ 386 (814)
T 3mkq_A 386 A 386 (814)
T ss_dssp T
T ss_pred c
Confidence 3
No 58
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.4e-33 Score=332.83 Aligned_cols=313 Identities=16% Similarity=0.232 Sum_probs=257.6
Q ss_pred EEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceeccccccC
Q 001039 772 VQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDRE 849 (1179)
Q Consensus 772 ~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~ 849 (1179)
..++|+|||+++++++.| |++||+.++.. ...+.+| ..+....|+ +
T Consensus 60 ~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~-------------------~~~~~~~-~~~~~~~~~------------~ 107 (420)
T 3vl1_A 60 KGNTFEKVGSHLYKARLDGHDFLFNTIIRDG-------------------SKMLKRA-DYTAVDTAK------------L 107 (420)
T ss_dssp TTCEEEEEETTEEEEEETTEEEEEECCSEET-------------------TTTSCSC-CEEEEEEEC------------S
T ss_pred cceeeeecCCeEEEEEcCCcEEEEEecccce-------------------eeEEecC-CceEEEEEe------------c
Confidence 357999999999999988 99999987662 2223445 333333444 8
Q ss_pred CCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEE--EecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEE
Q 001039 850 DAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVS 927 (1179)
Q Consensus 850 d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~ 927 (1179)
++++|++|+.||.|++||+. .......+.+|...|.+ +++++++|++|+.||+|++||+.+++.+..+.+|...|.
T Consensus 108 ~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~ 185 (420)
T 3vl1_A 108 QMRRFILGTTEGDIKVLDSN--FNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVT 185 (420)
T ss_dssp SSCEEEEEETTSCEEEECTT--SCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEE
T ss_pred CCCEEEEEECCCCEEEEeCC--CcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEE
Confidence 99999999999999999976 55666777899999986 488999999999999999999999999999999999999
Q ss_pred EEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEecc---CCCcEEEEE---------------------EcCCCCEEEEE
Q 001039 928 CVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGR---CSSAVLCME---------------------YDDSTGILAAG 982 (1179)
Q Consensus 928 ~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---~~~~v~~l~---------------------~sp~~~~l~sg 982 (1179)
+++|+ ++..+++|+.||+|++||+++++.+..+.. +...+.+++ |+|+++++++|
T Consensus 186 ~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 265 (420)
T 3vl1_A 186 DIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAG 265 (420)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEE
T ss_pred EEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEE
Confidence 99999 688999999999999999999999988864 344455554 57889999999
Q ss_pred eCCCeEEEEeCCCCceeEEee-cCCCCeEEEEEcCC---EEEEEeCCCcEEEEEccCCee-eEEeec-CCcCEEEEEEec
Q 001039 983 GRDAVANIWDIRAGRQMHKFL-GHTKWIRSIRMDRD---TVITGSDDWTARMWSISRGTC-DAVLAC-HAGPVQCVEYSS 1056 (1179)
Q Consensus 983 s~dg~I~iwD~~~~~~~~~~~-~~~~~I~sl~~~~~---~l~sgs~dg~I~iwd~~~~~~-~~~~~~-h~~~V~~l~~sp 1056 (1179)
+.||.|++||+++++.+..+. .|...|.+++|+++ ++++|+.||.|++||+++++. +..+.. |...|+++.+ +
T Consensus 266 ~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~ 344 (420)
T 3vl1_A 266 HVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-A 344 (420)
T ss_dssp ETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-E
T ss_pred cCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-C
Confidence 999999999999998877764 57889999999655 899999999999999998754 677776 6677888855 5
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCcceEE------EeecccCceE--EEEecCCC---EEEEEECCCcEEEEeCC
Q 001039 1057 SDRGIITGSSDGLLRFWENDDAGGIKCV------KNVTIHSSAI--LSINAGDH---WLGIGAADNSMSLFHRP 1119 (1179)
Q Consensus 1057 dg~~l~sgs~Dg~I~iwd~~~~~~~~~~------~~~~~h~~~i--~sis~dg~---~lasgs~Dg~I~iwd~~ 1119 (1179)
+++++++++.||.|++||+........+ ..+..|...+ .+++|+++ .+++++.+|.+.+|++.
T Consensus 345 ~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 345 AGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp TTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred CCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence 7889999999999999999874332222 1234555555 45579998 77777889999999986
No 59
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=4e-33 Score=324.41 Aligned_cols=323 Identities=16% Similarity=0.196 Sum_probs=256.8
Q ss_pred EEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEE--EecCCCEEEEE
Q 001039 822 IIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSG 899 (1179)
Q Consensus 822 ~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~--~s~d~~~l~sg 899 (1179)
.+..|.++|++++|+ |++++|++|+.||.|++||+..........+.+|...|.+ +++++++++++
T Consensus 3 ~~~~~~~~i~~~~~s------------~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 70 (372)
T 1k8k_C 3 YHSFLVEPISCHAWN------------KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 70 (372)
T ss_dssp EEESCSSCCCEEEEC------------TTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEE
T ss_pred eecccCCCeEEEEEC------------CCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEE
Confidence 356699999999998 8999999999999999999763323377888999999986 48999999999
Q ss_pred eCCCcEEEEECCCCeEEEE--eecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeE---E-EEeccCCCcEEEEEE
Q 001039 900 SDDQSVLVWDKQTSQLLEE--LKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTC---V-ATVGRCSSAVLCMEY 972 (1179)
Q Consensus 900 s~dg~I~iwd~~t~~~~~~--~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~---~-~~~~~~~~~v~~l~~ 972 (1179)
+.||.|++||+.+++.... +..|...|.+++|+ ++.++++|+.||.|++||+++++. . .....|...|.+++|
T Consensus 71 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~ 150 (372)
T 1k8k_C 71 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDW 150 (372)
T ss_dssp ETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEE
T ss_pred cCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEE
Confidence 9999999999998876544 46789999999999 688999999999999999988762 2 333567899999999
Q ss_pred cCCCCEEEEEeCCCeEEEEeC------------------CCCceeEEeecCCCCeEEEEEcC--CEEEEEeCCCcEEEEE
Q 001039 973 DDSTGILAAGGRDAVANIWDI------------------RAGRQMHKFLGHTKWIRSIRMDR--DTVITGSDDWTARMWS 1032 (1179)
Q Consensus 973 sp~~~~l~sgs~dg~I~iwD~------------------~~~~~~~~~~~~~~~I~sl~~~~--~~l~sgs~dg~I~iwd 1032 (1179)
+|+++++++++.||.|++||+ .+++.+..+.+|...|.+++|++ +.+++++.||.|++||
T Consensus 151 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d 230 (372)
T 1k8k_C 151 HPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLAD 230 (372)
T ss_dssp CTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred cCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 999999999999999999995 46788888989999999999954 5999999999999999
Q ss_pred ccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCC-cceEEEeecccCceEEEEecCCCEEEEEECCC
Q 001039 1033 ISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAG-GIKCVKNVTIHSSAILSINAGDHWLGIGAADN 1111 (1179)
Q Consensus 1033 ~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~-~~~~~~~~~~h~~~i~sis~dg~~lasgs~Dg 1111 (1179)
+++++.+..+..|...|++++|+|+++++++| .||.|++|++.+.. ....+..+..+... ..+...
T Consensus 231 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~ 297 (372)
T 1k8k_C 231 ADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQS------------SQRGLT 297 (372)
T ss_dssp GGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------------------C
T ss_pred CCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccc------------hhhhcc
Confidence 99999999999999999999999999988888 99999999998721 12333332222111 122234
Q ss_pred cEEEE---eCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEc-CCC---CEEEEEeCCCcEEEEECCCC
Q 001039 1112 SMSLF---HRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASD-LER---KRICSGGRNGLLRLWEATIN 1178 (1179)
Q Consensus 1112 ~I~iw---d~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fs-pdg---~~Lasgs~Dg~I~vWdv~tg 1178 (1179)
.+++| +........ ++ .......+|.+.|++++|+ ++| ++|+||+.||+|++|++.++
T Consensus 298 ~~~~~~~~~~~~~~~~~--~~-------~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~ 362 (372)
T 1k8k_C 298 ARERFQNLDKKASSEGS--AA-------AGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 362 (372)
T ss_dssp HHHHHHHCCCCC------------------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred hhhhhhhcccccccccC--cc-------ccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence 56666 332110000 00 0012234899999999966 777 99999999999999998653
No 60
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.2e-32 Score=329.31 Aligned_cols=286 Identities=23% Similarity=0.435 Sum_probs=254.1
Q ss_pred EEeccccccEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeE
Q 001039 877 ATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTC 956 (1179)
Q Consensus 877 ~~l~~h~~~v~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~ 956 (1179)
....+|...|.+++++++++++|+.||+|++||+.+++....+.+|...|.+++| +++.+++|+.||+|++||+.+++.
T Consensus 127 ~~~~~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~-~~~~l~sg~~dg~i~vwd~~~~~~ 205 (435)
T 1p22_A 127 HCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY-DERVIITGSSDSTVRVWDVNTGEM 205 (435)
T ss_dssp ECCCSSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC-CSSEEEEEETTSCEEEEESSSCCE
T ss_pred ecccCCCCcEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE-CCCEEEEEcCCCeEEEEECCCCcE
Confidence 3345677889999999999999999999999999999999999999999999999 788999999999999999999999
Q ss_pred EEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee---EEeecCCCCeEEEEEcCCEEEEEeCCCcEEEEEc
Q 001039 957 VATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQM---HKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSI 1033 (1179)
Q Consensus 957 ~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~---~~~~~~~~~I~sl~~~~~~l~sgs~dg~I~iwd~ 1033 (1179)
+..+..|...|.+++|+ ++.+++|+.||.|++||+++++.. ..+.+|...|.+++++++.+++|+.||.|++||+
T Consensus 206 ~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~ 283 (435)
T 1p22_A 206 LNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNT 283 (435)
T ss_dssp EEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEET
T ss_pred EEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEEC
Confidence 99999999999999997 458999999999999999988765 6678999999999999999999999999999999
Q ss_pred cCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEEecCCCEEEEEECCCcE
Q 001039 1034 SRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIGAADNSM 1113 (1179)
Q Consensus 1034 ~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~lasgs~Dg~I 1113 (1179)
++++.+..+.+|...|.+++++ ++++++|+.||.|++||+.+ ..++..+.+|...+.++..++.++++|+.||.|
T Consensus 284 ~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~---~~~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i 358 (435)
T 1p22_A 284 STCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIEC---GACLRVLEGHEELVRCIRFDNKRIVSGAYDGKI 358 (435)
T ss_dssp TTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTT---CCEEEEECCCSSCEEEEECCSSEEEEEETTSCE
T ss_pred CcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCC---CCEEEEEeCCcCcEEEEEecCCEEEEEeCCCcE
Confidence 9999999999999999999995 78999999999999999998 467778889999999999999999999999999
Q ss_pred EEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001039 1114 SLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATIN 1178 (1179)
Q Consensus 1114 ~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~tg 1178 (1179)
++||+....... ......+.....+|.+.|++++| ++++|++|+.||+|++||+.++
T Consensus 359 ~vwd~~~~~~~~------~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 359 KVWDLVAALDPR------APAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLND 415 (435)
T ss_dssp EEEEHHHHTSTT------SCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC----
T ss_pred EEEECCCCCCcc------ccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCC
Confidence 999986432100 00111356777899999999999 7889999999999999999764
No 61
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=6.8e-33 Score=326.02 Aligned_cols=287 Identities=14% Similarity=0.186 Sum_probs=249.8
Q ss_pred eEEEeccccccEEEEecCCCEEEEEeCCCcEEEEECCCCe------EEEEeecCCCcEEEEEEe-C----C---CEEEEE
Q 001039 875 LRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQ------LLEELKGHDAQVSCVRML-S----G---ERVLTA 940 (1179)
Q Consensus 875 ~~~~l~~h~~~v~~~s~d~~~l~sgs~dg~I~iwd~~t~~------~~~~~~~h~~~V~~l~~s-~----~---~~l~sg 940 (1179)
....+.+|...|.++..+.++|++|+.||+|++||+.+++ .+..+.+|...|.+++|+ + + .+++++
T Consensus 8 ~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~ 87 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT 87 (397)
T ss_dssp EEEESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred hhhhhhhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEE
Confidence 4567889999999886666999999999999999999987 788889999999999999 5 6 799999
Q ss_pred EcCCeEEEEeCCCCeE-----EEEeccC-----CCcEEEEEEc----CCCCE-EEEEeCCCeEEEEeCCC------Ccee
Q 001039 941 SHDGTVKMWDVRTDTC-----VATVGRC-----SSAVLCMEYD----DSTGI-LAAGGRDAVANIWDIRA------GRQM 999 (1179)
Q Consensus 941 s~dg~I~iwd~~~~~~-----~~~~~~~-----~~~v~~l~~s----p~~~~-l~sgs~dg~I~iwD~~~------~~~~ 999 (1179)
+.||.|++||+.+++. ...+..| ...|.+++|+ |+++. +++++.||.|++||+++ ++.+
T Consensus 88 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 167 (397)
T 1sq9_A 88 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL 167 (397)
T ss_dssp ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred cCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccccee
Confidence 9999999999998886 7888888 5899999999 99999 99999999999999998 7666
Q ss_pred E-----Eee-------cCCCCeEEEEEcCC-EEEEEeCCCcEEEEEccCCeeeEEeec---C---CcCEEEEEEecCCCE
Q 001039 1000 H-----KFL-------GHTKWIRSIRMDRD-TVITGSDDWTARMWSISRGTCDAVLAC---H---AGPVQCVEYSSSDRG 1060 (1179)
Q Consensus 1000 ~-----~~~-------~~~~~I~sl~~~~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~---h---~~~V~~l~~spdg~~ 1060 (1179)
. .+. .|...|.+++|+++ .+++++.||.|++||+++++.+..+.. | ...|++++|+|++++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~ 247 (397)
T 1sq9_A 168 NWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSL 247 (397)
T ss_dssp CCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTE
T ss_pred eccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCE
Confidence 6 774 48889999999644 999999999999999999999999998 9 999999999999999
Q ss_pred EEEEeCC---CcEEEEEcCCCCcceEEEeecc-------------cCceEEEE--ecCCCEEEEEECCCcEEEEeCCCCC
Q 001039 1061 IITGSSD---GLLRFWENDDAGGIKCVKNVTI-------------HSSAILSI--NAGDHWLGIGAADNSMSLFHRPQER 1122 (1179)
Q Consensus 1061 l~sgs~D---g~I~iwd~~~~~~~~~~~~~~~-------------h~~~i~si--s~dg~~lasgs~Dg~I~iwd~~~~~ 1122 (1179)
|++++.| |.|++||+.+ .+.+..+.+ |...|.++ +|++++|++|+.||.|++||+.+.
T Consensus 248 l~~~~~d~~~g~i~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~- 323 (397)
T 1sq9_A 248 LAIAHDSNSFGCITLYETEF---GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK- 323 (397)
T ss_dssp EEEEEEETTEEEEEEEETTT---CCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-
T ss_pred EEEEecCCCCceEEEEECCC---CcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC-
Confidence 9999999 9999999988 456666767 88888666 689999999999999999999743
Q ss_pred cCcccCCCCccccceeeeecC------CC---------------cccEEEEEEcCCC----------CEEEEEeCCCcEE
Q 001039 1123 LGGFSGTGSKMSGWQLYRTPQ------KT---------------VAVVRCIASDLER----------KRICSGGRNGLLR 1171 (1179)
Q Consensus 1123 ~~~~~~~g~~~~~~~~~~~~~------~h---------------~~~V~~v~fspdg----------~~Lasgs~Dg~I~ 1171 (1179)
+....+. +| ...|++++|+|+| ++|++|+.||.|+
T Consensus 324 --------------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~ 389 (397)
T 1sq9_A 324 --------------ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIR 389 (397)
T ss_dssp --------------EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEE
T ss_pred --------------ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEE
Confidence 3334444 55 8999999999999 7999999999999
Q ss_pred EEECCCCC
Q 001039 1172 LWEATINI 1179 (1179)
Q Consensus 1172 vWdv~tg~ 1179 (1179)
+|++.+|+
T Consensus 390 iw~~~~g~ 397 (397)
T 1sq9_A 390 WFREAGGK 397 (397)
T ss_dssp EEEEEC--
T ss_pred EEEcCCCC
Confidence 99999985
No 62
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=5.9e-32 Score=343.36 Aligned_cols=306 Identities=18% Similarity=0.362 Sum_probs=248.0
Q ss_pred eEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCC---ceeEEEeccccccEEE--EecCCC
Q 001039 820 IRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRG---SELRATLKGHTRTVRA--INSDRG 894 (1179)
Q Consensus 820 ~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~---~~~~~~l~~h~~~v~~--~s~d~~ 894 (1179)
...+++|++.|++++|++ .++++|+||+.||+|++||+.... ......+.+|...|.+ ++++++
T Consensus 375 ~~~l~~H~~~V~~v~~~~-----------~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~ 443 (694)
T 3dm0_A 375 KGTMRAHTDMVTAIATPI-----------DNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQ 443 (694)
T ss_dssp EEEEECCSSCEEEEECCT-----------TCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSS
T ss_pred hhhcccCCceeEEEEecC-----------CCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCC
Confidence 456899999999999983 346899999999999999986432 2345678999999985 589999
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEe---ccCCCcEEEE
Q 001039 895 KVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATV---GRCSSAVLCM 970 (1179)
Q Consensus 895 ~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~---~~~~~~v~~l 970 (1179)
+|++|+.||+|++||+.+++....+.+|...|.+++|+ ++..+++|+.|++|++||.......... .+|...|.++
T Consensus 444 ~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~ 523 (694)
T 3dm0_A 444 FALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCV 523 (694)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEE
T ss_pred EEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEE
Confidence 99999999999999999999999999999999999999 6889999999999999998765444333 3578889999
Q ss_pred EEcCCC--CEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcC--CEEEEEeCCCcEEEEEccCCeeeEEeecCC
Q 001039 971 EYDDST--GILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR--DTVITGSDDWTARMWSISRGTCDAVLACHA 1046 (1179)
Q Consensus 971 ~~sp~~--~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~ 1046 (1179)
+|+|++ ..+++|+.||.|++||+++++....+.+|...|+++++++ +++++|+.||+|++||+++++.+..+. +.
T Consensus 524 ~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~ 602 (694)
T 3dm0_A 524 RFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE-AN 602 (694)
T ss_dssp EECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB-CS
T ss_pred EEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec-CC
Confidence 999986 5899999999999999999999999999999999999964 599999999999999999999888776 45
Q ss_pred cCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEEecCCCEEEEEECCCcEEEEeCCCCCcCcc
Q 001039 1047 GPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRPQERLGGF 1126 (1179)
Q Consensus 1047 ~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~lasgs~Dg~I~iwd~~~~~~~~~ 1126 (1179)
..|.+++|+|++.++++++ |+.|++||+.+ ...+..+..+...... ..+.
T Consensus 603 ~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~---~~~~~~~~~~~~~~~~------------------~~~~-------- 652 (694)
T 3dm0_A 603 SVIHALCFSPNRYWLCAAT-EHGIKIWDLES---KSIVEDLKVDLKAEAE------------------KADN-------- 652 (694)
T ss_dssp SCEEEEEECSSSSEEEEEE-TTEEEEEETTT---TEEEEEECCCCC----------------------------------
T ss_pred CcEEEEEEcCCCcEEEEEc-CCCEEEEECCC---CCChhhhccccccccc------------------cccc--------
Confidence 6899999999999888775 55699999998 4444444332211000 0000
Q ss_pred cCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001039 1127 SGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATI 1177 (1179)
Q Consensus 1127 ~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~t 1177 (1179)
.+ ......+...+++++|||||++|+||+.||+|++|++..
T Consensus 653 --~~--------~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 653 --SG--------PAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp ------------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred --cc--------cccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence 00 000112334588999999999999999999999999863
No 63
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.9e-32 Score=312.36 Aligned_cols=289 Identities=17% Similarity=0.282 Sum_probs=257.4
Q ss_pred CCCCCCCCcccccCCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceE
Q 001039 754 ATNDDQQPAEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAIT 831 (1179)
Q Consensus 754 ~~~~~~~~~~~~gh~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~ 831 (1179)
..|...+...+.+|...|.+++|+|||+++++++.+ |++||+.++. .+..+.+|.+.|+
T Consensus 18 ~~G~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-------------------~~~~~~~h~~~v~ 78 (369)
T 3zwl_B 18 FQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE-------------------RLGTLDGHTGTIW 78 (369)
T ss_dssp SSCCSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCC-------------------EEEEECCCSSCEE
T ss_pred EeccccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch-------------------hhhhhhhcCCcEE
Confidence 345666778889999999999999999999999988 9999998776 7889999999999
Q ss_pred EEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEE--EecCCCEEEEEeCC-----Cc
Q 001039 832 ALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDD-----QS 904 (1179)
Q Consensus 832 ~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~--~s~d~~~l~sgs~d-----g~ 904 (1179)
+++|+ +++++|++|+.||+|++||+. .......+. |...+.+ ++++++++++++.+ |.
T Consensus 79 ~~~~~------------~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~ 143 (369)
T 3zwl_B 79 SIDVD------------CFTKYCVTGSADYSIKLWDVS--NGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGS 143 (369)
T ss_dssp EEEEC------------TTSSEEEEEETTTEEEEEETT--TCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCE
T ss_pred EEEEc------------CCCCEEEEEeCCCeEEEEECC--CCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCE
Confidence 99998 899999999999999999986 444555555 7777774 58999999999999 99
Q ss_pred EEEEECCCCe-----------EEEEeecCCC--cEEEEEEe-CCCEEEEEEcCCeEEEEeCCC-CeEEEEeccCCCcEEE
Q 001039 905 VLVWDKQTSQ-----------LLEELKGHDA--QVSCVRML-SGERVLTASHDGTVKMWDVRT-DTCVATVGRCSSAVLC 969 (1179)
Q Consensus 905 I~iwd~~t~~-----------~~~~~~~h~~--~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~-~~~~~~~~~~~~~v~~ 969 (1179)
|++||+.++. ....+..|.. .+.+++|+ ++..+++++.||.|++||+++ ++.+..+..|...|.+
T Consensus 144 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~ 223 (369)
T 3zwl_B 144 INIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISD 223 (369)
T ss_dssp EEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEE
T ss_pred EEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeE
Confidence 9999987653 3344555666 89999999 688999999999999999999 7888889899999999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcC--CEEEEEeCCC--------------cEEEEEc
Q 001039 970 MEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR--DTVITGSDDW--------------TARMWSI 1033 (1179)
Q Consensus 970 l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~--~~l~sgs~dg--------------~I~iwd~ 1033 (1179)
++|+|+++++++++.||.|++||+++++.+..+. +...+.++++++ ..+++++.++ .+++||.
T Consensus 224 ~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~ 302 (369)
T 3zwl_B 224 MQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHK 302 (369)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEET
T ss_pred EEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEec
Confidence 9999999999999999999999999999988886 778899999954 5899998888 8999999
Q ss_pred cCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 001039 1034 SRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDD 1077 (1179)
Q Consensus 1034 ~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~ 1077 (1179)
.+++.+..+.+|.+.|++++|+|++++|++|+.||.|++|+++.
T Consensus 303 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 303 IFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp TTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred CCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence 99999999999999999999999999999999999999999986
No 64
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.2e-32 Score=304.63 Aligned_cols=279 Identities=24% Similarity=0.391 Sum_probs=253.7
Q ss_pred cccccCCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeeccc
Q 001039 762 AEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKR 839 (1179)
Q Consensus 762 ~~~~gh~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~ 839 (1179)
..+.+|...|.+++| |+|+++++++.| |++||+.++. ....+.+|.+.|++++|+
T Consensus 12 ~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~-------------------~~~~~~~~~~~v~~~~~~--- 68 (313)
T 3odt_A 12 ATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQW-------------------LGTVVYTGQGFLNSVCYD--- 68 (313)
T ss_dssp EEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSE-------------------EEEEEEECSSCEEEEEEE---
T ss_pred HHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCE-------------------EEEEeecCCccEEEEEEC---
Confidence 346789999999999 999999999998 9999998765 678899999999999998
Q ss_pred ceeccccccCCCCEEEEEeCCCcEEEEcCCCC-CceeEEEeccccccEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 001039 840 EVWDLVGDREDAGFFISGSTDCLVKIWDPSLR-GSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEE 918 (1179)
Q Consensus 840 ~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~-~~~~~~~l~~h~~~v~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~ 918 (1179)
|+++++++|+.||.|++|++... .......+.+|...|.+++.+++.+++++.||.|++|| .++....
T Consensus 69 ---------~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~~~~~~ 137 (313)
T 3odt_A 69 ---------SEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EGSLVYN 137 (313)
T ss_dssp ---------TTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE--TTEEEEE
T ss_pred ---------CCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc--CCcEEEe
Confidence 89999999999999999998632 23456778899999999988999999999999999999 7788889
Q ss_pred eecCCCcEEEEEEe--CCCEEEEEEcCCeEEEEeCCCCeEEEEecc-CCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 001039 919 LKGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTDTCVATVGR-CSSAVLCMEYDDSTGILAAGGRDAVANIWDIRA 995 (1179)
Q Consensus 919 ~~~h~~~V~~l~~s--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~ 995 (1179)
+..|...+.++.+. +++.+++++.||.|++|| .++....+.. +...+.+++|+|++. +++++.||.|++||+++
T Consensus 138 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~ 214 (313)
T 3odt_A 138 LQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHT 214 (313)
T ss_dssp EECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTT
T ss_pred cccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCc
Confidence 99999999999987 588999999999999999 5666777766 889999999999998 89999999999999999
Q ss_pred CceeEEeecCCCCeEEEEEcCC-EEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEE
Q 001039 996 GRQMHKFLGHTKWIRSIRMDRD-TVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWE 1074 (1179)
Q Consensus 996 ~~~~~~~~~~~~~I~sl~~~~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd 1074 (1179)
++.+..+.+|...|.+++++++ .+++++.||.|++||+++++....+..|...|++++|+|+++ +++++.||.|++||
T Consensus 215 ~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~ 293 (313)
T 3odt_A 215 GDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFS 293 (313)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEE
T ss_pred hhhhhhhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEe
Confidence 9999999999999999999765 899999999999999999999999999999999999999998 66799999999999
Q ss_pred cCCC
Q 001039 1075 NDDA 1078 (1179)
Q Consensus 1075 ~~~~ 1078 (1179)
+.++
T Consensus 294 ~~~~ 297 (313)
T 3odt_A 294 QEKS 297 (313)
T ss_dssp SCGG
T ss_pred CCCC
Confidence 9874
No 65
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=4e-32 Score=324.78 Aligned_cols=281 Identities=24% Similarity=0.478 Sum_probs=253.1
Q ss_pred eEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEEE
Q 001039 820 IRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSG 899 (1179)
Q Consensus 820 ~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~sg 899 (1179)
+....+|...|+++++ +++++++|+.||+|++||.. +.+....+.+|...|.++..+++.+++|
T Consensus 126 ~~~~~~~~~~v~~~~~--------------d~~~l~~g~~dg~i~iwd~~--~~~~~~~~~~h~~~v~~l~~~~~~l~sg 189 (435)
T 1p22_A 126 IHCRSETSKGVYCLQY--------------DDQKIVSGLRDNTIKIWDKN--TLECKRILTGHTGSVLCLQYDERVIITG 189 (435)
T ss_dssp EECCCSSCCCEEEEEC--------------CSSEEEEEESSSCEEEEESS--SCCEEEEECCCSSCEEEEECCSSEEEEE
T ss_pred EecccCCCCcEEEEEE--------------CCCEEEEEeCCCeEEEEeCC--CCeEEEEEcCCCCcEEEEEECCCEEEEE
Confidence 3344567788998874 68999999999999999976 5667788999999999999999999999
Q ss_pred eCCCcEEEEECCCCeEEEEeecCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEE---EEeccCCCcEEEEEEcCCC
Q 001039 900 SDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCV---ATVGRCSSAVLCMEYDDST 976 (1179)
Q Consensus 900 s~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~---~~~~~~~~~v~~l~~sp~~ 976 (1179)
+.||+|++||+.+++.+..+.+|...|.+++|+ ++.+++|+.||.|++||+.+++.. ..+.+|...|.++++ ++
T Consensus 190 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~ 266 (435)
T 1p22_A 190 SSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN-NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DD 266 (435)
T ss_dssp ETTSCEEEEESSSCCEEEEECCCCSCEEEEECC-TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ET
T ss_pred cCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc-CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CC
Confidence 999999999999999999999999999999997 569999999999999999987755 667789999999999 78
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcCCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEec
Q 001039 977 GILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSS 1056 (1179)
Q Consensus 977 ~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp 1056 (1179)
+++++|+.||.|++||+++++.+..+.+|...|.++.++++.+++|+.||.|++||+++++++..+.+|...|++++|
T Consensus 267 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~-- 344 (435)
T 1p22_A 267 KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF-- 344 (435)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--
T ss_pred CEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCc------ceEEEeecccCceEEEEecCCCEEEEEECCCcEEEEeCCCC
Q 001039 1057 SDRGIITGSSDGLLRFWENDDAGG------IKCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRPQE 1121 (1179)
Q Consensus 1057 dg~~l~sgs~Dg~I~iwd~~~~~~------~~~~~~~~~h~~~i~sis~dg~~lasgs~Dg~I~iwd~~~~ 1121 (1179)
+++++++|+.||.|++||+.++.. ..++..+.+|...|.++..++.+|++|+.||+|++||+.+.
T Consensus 345 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 345 DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLND 415 (435)
T ss_dssp CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC----
T ss_pred cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeCCCEEEEEeCCCEEEEEECCCC
Confidence 789999999999999999876321 12777888999999999899999999999999999999743
No 66
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=4.6e-32 Score=314.25 Aligned_cols=289 Identities=16% Similarity=0.232 Sum_probs=243.9
Q ss_pred EEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEecc-----ccccEEE--EecC-
Q 001039 821 RIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKG-----HTRTVRA--INSD- 892 (1179)
Q Consensus 821 ~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~-----h~~~v~~--~s~d- 892 (1179)
....+|.++|++++|+|... .....+++++.++.|++||+. .......+.. |...|.+ ++++
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~--------~~~~~~~~~~~~~~v~vw~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 81 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSK--------EGDPLVFATVGSNRVTLYECH--SQGEIRLLQSYVDADADENFYTCAWTYDS 81 (366)
T ss_dssp EEECTTCSCEEEEEECTTCC--------TTSCEEEEEEETTEEEEEEEC--GGGCEEEEEEEECSCTTCCEEEEEEEECT
T ss_pred EeecCCCCceEEEEEecccC--------CCCceEEEECCCCEEEEEEcC--CCcEEEeeeeccccCCCCcEEEEEeccCC
Confidence 45669999999999984100 134566666667799999976 3333344443 4566775 5777
Q ss_pred ---CCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe--CCCEEEEEEcCCeEEEEeCCCCeEEEEe---ccCC
Q 001039 893 ---RGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTDTCVATV---GRCS 964 (1179)
Q Consensus 893 ---~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s--~~~~l~sgs~dg~I~iwd~~~~~~~~~~---~~~~ 964 (1179)
+.++++|+.||.|++||+.+++.+..+.+|...|.+++|+ ++..+++|+.||.|++||+++++.+..+ ..|.
T Consensus 82 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 161 (366)
T 3k26_A 82 NTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHR 161 (366)
T ss_dssp TTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCS
T ss_pred CCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccccccc
Confidence 6799999999999999999999999999999999999998 4788999999999999999999999888 6799
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee----------------------------cCCCCeEEEEEcC
Q 001039 965 SAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFL----------------------------GHTKWIRSIRMDR 1016 (1179)
Q Consensus 965 ~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~----------------------------~~~~~I~sl~~~~ 1016 (1179)
..|.+++|+|+++++++++.||.|++||+++++....+. +|...|.+++|++
T Consensus 162 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 241 (366)
T 3k26_A 162 DEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLG 241 (366)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEET
T ss_pred CceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcC
Confidence 999999999999999999999999999999876544333 3899999999999
Q ss_pred CEEEEEeCCCcEEEEEccCCee--------------eEEeecCCcCEEEEEEecC--CCEEEEEeCCCcEEEEEcCCCCc
Q 001039 1017 DTVITGSDDWTARMWSISRGTC--------------DAVLACHAGPVQCVEYSSS--DRGIITGSSDGLLRFWENDDAGG 1080 (1179)
Q Consensus 1017 ~~l~sgs~dg~I~iwd~~~~~~--------------~~~~~~h~~~V~~l~~spd--g~~l~sgs~Dg~I~iwd~~~~~~ 1080 (1179)
+++++++.||.|++||+.++.. +..+..|...|++++|+|+ +++|++|+.||.|++||+.++..
T Consensus 242 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~ 321 (366)
T 3k26_A 242 DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDP 321 (366)
T ss_dssp TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSG
T ss_pred CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCC
Confidence 9999999999999999988744 7778889999999999999 99999999999999999998654
Q ss_pred ce-EEEeeccc--CceEEEE--ecCCCEEEEEECCCcEEEEeCC
Q 001039 1081 IK-CVKNVTIH--SSAILSI--NAGDHWLGIGAADNSMSLFHRP 1119 (1179)
Q Consensus 1081 ~~-~~~~~~~h--~~~i~si--s~dg~~lasgs~Dg~I~iwd~~ 1119 (1179)
.. ....+.+| ...|.++ ++++++|++|+.||.|++||+.
T Consensus 322 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 322 HKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp GGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 33 45566666 6777655 7899999999999999999985
No 67
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=7.6e-32 Score=317.06 Aligned_cols=284 Identities=15% Similarity=0.232 Sum_probs=250.0
Q ss_pred ceEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCC----ceeEEEeccccccEEEE--ecC
Q 001039 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRG----SELRATLKGHTRTVRAI--NSD 892 (1179)
Q Consensus 819 ~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~----~~~~~~l~~h~~~v~~~--s~d 892 (1179)
..+.+.+|.+.|++++|+ + ++|++|+.||+|++||+.... ......+.+|...|.++ +++
T Consensus 8 ~~~~~~~h~~~i~~~~~~------------~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 73 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSAC------------N--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQA 73 (397)
T ss_dssp EEEESSCSSSCEEEEEEC------------S--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEE
T ss_pred hhhhhhhhhcCeEEEEec------------C--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecc
Confidence 567788999999999997 5 799999999999999987333 23567888999999864 788
Q ss_pred ----C---CEEEEEeCCCcEEEEECCCCeE-----EEEeecC-----CCcEEEEEEe----C-CCE-EEEEEcCCeEEEE
Q 001039 893 ----R---GKVVSGSDDQSVLVWDKQTSQL-----LEELKGH-----DAQVSCVRML----S-GER-VLTASHDGTVKMW 949 (1179)
Q Consensus 893 ----~---~~l~sgs~dg~I~iwd~~t~~~-----~~~~~~h-----~~~V~~l~~s----~-~~~-l~sgs~dg~I~iw 949 (1179)
+ .+|++++.||.|++||+.+++. ...+..| ...|.+++|+ + +.. +++|+.||.|++|
T Consensus 74 ~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 153 (397)
T 1sq9_A 74 IERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIW 153 (397)
T ss_dssp EETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEE
T ss_pred cccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEE
Confidence 8 9999999999999999998886 8888888 5999999999 4 677 9999999999999
Q ss_pred eCCC------CeEEE-----Ee-------ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeec---C---
Q 001039 950 DVRT------DTCVA-----TV-------GRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLG---H--- 1005 (1179)
Q Consensus 950 d~~~------~~~~~-----~~-------~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~---~--- 1005 (1179)
|+.+ ++.+. .+ ..|...|.+++|+|++ .+++++.||.|++||+++++.+..+.. |
T Consensus 154 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~ 232 (397)
T 1sq9_A 154 KFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINN 232 (397)
T ss_dssp EEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CC
T ss_pred eCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEecccccccc
Confidence 9988 66555 55 4478899999999999 999999999999999999999999988 8
Q ss_pred CCCeEEEEEc--CCEEEEEeCC---CcEEEEEccCCeeeEEeec-------------CCcCEEEEEEecCCCEEEEEeCC
Q 001039 1006 TKWIRSIRMD--RDTVITGSDD---WTARMWSISRGTCDAVLAC-------------HAGPVQCVEYSSSDRGIITGSSD 1067 (1179)
Q Consensus 1006 ~~~I~sl~~~--~~~l~sgs~d---g~I~iwd~~~~~~~~~~~~-------------h~~~V~~l~~spdg~~l~sgs~D 1067 (1179)
...|.+++|+ ++++++++.| |.|++||+++++.+..+.+ |...|++++|+|++++|++|+.|
T Consensus 233 ~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 312 (397)
T 1sq9_A 233 SNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD 312 (397)
T ss_dssp CCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETT
T ss_pred CCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCC
Confidence 9999999995 4599999999 9999999999999999998 99999999999999999999999
Q ss_pred CcEEEEEcCCCCcceEEEeec------cc---------------CceEEEE--ecCC----------CEEEEEECCCcEE
Q 001039 1068 GLLRFWENDDAGGIKCVKNVT------IH---------------SSAILSI--NAGD----------HWLGIGAADNSMS 1114 (1179)
Q Consensus 1068 g~I~iwd~~~~~~~~~~~~~~------~h---------------~~~i~si--s~dg----------~~lasgs~Dg~I~ 1114 (1179)
|.|++||+.+ .+.+..+. +| ...|.++ ++++ ++|++|+.||.|+
T Consensus 313 g~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~ 389 (397)
T 1sq9_A 313 GKLRFWDVKT---KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIR 389 (397)
T ss_dssp SEEEEEETTT---TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEE
T ss_pred CeEEEEEcCC---CceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEE
Confidence 9999999988 46666676 66 7778666 6888 7999999999999
Q ss_pred EEeCCC
Q 001039 1115 LFHRPQ 1120 (1179)
Q Consensus 1115 iwd~~~ 1120 (1179)
+||+.+
T Consensus 390 iw~~~~ 395 (397)
T 1sq9_A 390 WFREAG 395 (397)
T ss_dssp EEEEEC
T ss_pred EEEcCC
Confidence 999863
No 68
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1e-31 Score=315.05 Aligned_cols=277 Identities=16% Similarity=0.197 Sum_probs=232.8
Q ss_pred ccccCCcceEEEEEccCC-CceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEE--ecccCceEEEEeec
Q 001039 763 EASGIGRSWVQSMFSREA-SSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRII--RGHAGAITALHCVT 837 (1179)
Q Consensus 763 ~~~gh~~~i~~~~fSpdg-~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~gH~~~V~~v~~s~ 837 (1179)
...+|...|.+++|+|+| +++++|+.| |++||+.++. ....+ .+|.+.|++++|+
T Consensus 68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-------------------~~~~~~~~~h~~~v~~~~~~- 127 (383)
T 3ei3_B 68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQN-------------------KTSFIQGMGPGDAITGMKFN- 127 (383)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTT-------------------CEEEECCCSTTCBEEEEEEE-
T ss_pred eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcc-------------------cceeeecCCcCCceeEEEeC-
Confidence 356888999999999999 999999988 9999999766 34444 4799999999998
Q ss_pred ccceeccccccC-CCCEEEEEeCCCcEEEEcCCCCCceeEEEecc---ccccEEE--EecCCCEEEEEeCCCcEEEEECC
Q 001039 838 KREVWDLVGDRE-DAGFFISGSTDCLVKIWDPSLRGSELRATLKG---HTRTVRA--INSDRGKVVSGSDDQSVLVWDKQ 911 (1179)
Q Consensus 838 ~~~~~~~~~~s~-d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~---h~~~v~~--~s~d~~~l~sgs~dg~I~iwd~~ 911 (1179)
| ++++|++|+.||+|++||+.. .....+.. |...|.+ ++++++++++|+.||.|++||+
T Consensus 128 -----------~~~~~~l~s~~~d~~i~iwd~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~- 192 (383)
T 3ei3_B 128 -----------QFNTNQLFVSSIRGATTLRDFSG---SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL- 192 (383)
T ss_dssp -----------TTEEEEEEEEETTTEEEEEETTS---CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-
T ss_pred -----------CCCCCEEEEEeCCCEEEEEECCC---CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-
Confidence 6 789999999999999999872 33344433 4466775 5899999999999999999999
Q ss_pred CCeEEEEeecCCCcEEEEEEe-CCC-EEEEEEcCCeEEEEeCCC----CeEEEEeccCCCcEEEEEEcC-CCCEEEEEeC
Q 001039 912 TSQLLEELKGHDAQVSCVRML-SGE-RVLTASHDGTVKMWDVRT----DTCVATVGRCSSAVLCMEYDD-STGILAAGGR 984 (1179)
Q Consensus 912 t~~~~~~~~~h~~~V~~l~~s-~~~-~l~sgs~dg~I~iwd~~~----~~~~~~~~~~~~~v~~l~~sp-~~~~l~sgs~ 984 (1179)
+++.+..+.+|...|.+++|+ ++. .+++|+.||.|++||+++ +..+..+ .|...|.+++|+| +++++++++.
T Consensus 193 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~ 271 (383)
T 3ei3_B 193 DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQ 271 (383)
T ss_dssp TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEES
T ss_pred CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcC
Confidence 588889999999999999999 455 899999999999999998 6677766 6899999999999 9999999999
Q ss_pred CCeEEEEeCCCCceeEEeecCC-------C----------CeEEEEEcCC-EEEEEeCCCcEEEEEccCCeeeEEeec--
Q 001039 985 DAVANIWDIRAGRQMHKFLGHT-------K----------WIRSIRMDRD-TVITGSDDWTARMWSISRGTCDAVLAC-- 1044 (1179)
Q Consensus 985 dg~I~iwD~~~~~~~~~~~~~~-------~----------~I~sl~~~~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~-- 1044 (1179)
||.|++||+++++....+.+|. . .+..++++++ .+ +|+.||.|++||+.+++.+..+.+
T Consensus 272 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~ 350 (383)
T 3ei3_B 272 RNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPN 350 (383)
T ss_dssp SSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTT
T ss_pred CCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCceeeeecCCC
Confidence 9999999999988877776553 2 2223444222 22 667899999999999999999987
Q ss_pred CCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 001039 1045 HAGPVQCVEYSSSDRGIITGSSDGLLRFWENDD 1077 (1179)
Q Consensus 1045 h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~ 1077 (1179)
|.+.+.+++|+|++++|++|+ ||.|++||+++
T Consensus 351 ~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 351 AAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp BCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 567788889999999999997 99999999875
No 69
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-30 Score=296.05 Aligned_cols=280 Identities=19% Similarity=0.296 Sum_probs=247.4
Q ss_pred CceeEEEeccccccEEEEe-cCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEE
Q 001039 872 GSELRATLKGHTRTVRAIN-SDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMW 949 (1179)
Q Consensus 872 ~~~~~~~l~~h~~~v~~~s-~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iw 949 (1179)
+.+....+.+|...|.++. ++++++++|+.||.|++||+.+++....+..|...|.+++|+ ++..+++|+.||.|++|
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGV 86 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEEEETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred cHHHHHHhhCCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEE
Confidence 4567788999999999753 889999999999999999999999999999999999999999 68899999999999999
Q ss_pred eCCCC---eEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEE---cCCEEEEEe
Q 001039 950 DVRTD---TCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM---DRDTVITGS 1023 (1179)
Q Consensus 950 d~~~~---~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~---~~~~l~sgs 1023 (1179)
++... +....+..|...|.+++| +++.+++++.||.|++|| .++....+..|...+.++.+ +++.+++++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 162 (313)
T 3odt_A 87 PLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTAS 162 (313)
T ss_dssp ETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEE
T ss_pred EeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEE
Confidence 98764 567778889999999999 577999999999999999 77788889999999999988 467999999
Q ss_pred CCCcEEEEEccCCeeeEEeec-CCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEE--ecC
Q 001039 1024 DDWTARMWSISRGTCDAVLAC-HAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSI--NAG 1100 (1179)
Q Consensus 1024 ~dg~I~iwd~~~~~~~~~~~~-h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~si--s~d 1100 (1179)
.||.|++|| .++....+.. |...+.+++|+|++. +++++.||.|++||+.+ .+.+..+.+|...+.++ +++
T Consensus 163 ~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~i~~~~~~~~ 236 (313)
T 3odt_A 163 ADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHT---GDVLRTYEGHESFVYCIKLLPN 236 (313)
T ss_dssp TTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTT---CCEEEEEECCSSCEEEEEECTT
T ss_pred CCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCc---hhhhhhhhcCCceEEEEEEecC
Confidence 999999999 5666777776 899999999999998 99999999999999988 45677777899888776 677
Q ss_pred CCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001039 1101 DHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATIN 1178 (1179)
Q Consensus 1101 g~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~tg 1178 (1179)
+ .+++|+.||.|++||+.+. +.......|...|++++|+|+++ +++++.||.|++||+.++
T Consensus 237 ~-~l~~~~~dg~v~iwd~~~~---------------~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~ 297 (313)
T 3odt_A 237 G-DIVSCGEDRTVRIWSKENG---------------SLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKS 297 (313)
T ss_dssp S-CEEEEETTSEEEEECTTTC---------------CEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGG
T ss_pred C-CEEEEecCCEEEEEECCCC---------------ceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCC
Confidence 7 6899999999999999733 45666778889999999999998 667999999999999875
No 70
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.3e-31 Score=337.96 Aligned_cols=285 Identities=19% Similarity=0.357 Sum_probs=242.5
Q ss_pred cccCCcceEEEEEccCC-CceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccc
Q 001039 764 ASGIGRSWVQSMFSREA-SSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKRE 840 (1179)
Q Consensus 764 ~~gh~~~i~~~~fSpdg-~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~ 840 (1179)
+.+|...|.+++|+|++ .+++||+.| |++|++.+.... .....+.+.+|.+.|++++|+
T Consensus 378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~--------------~~~~~~~~~~h~~~v~~v~~s---- 439 (694)
T 3dm0_A 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA--------------YGVAQRRLTGHSHFVEDVVLS---- 439 (694)
T ss_dssp EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTC--------------SCEEEEEEECCSSCEEEEEEC----
T ss_pred cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcc--------------cccccceecCCCCcEEEEEEC----
Confidence 56899999999999975 689999998 999999864421 112467899999999999998
Q ss_pred eeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEE--EecCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 001039 841 VWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLLEE 918 (1179)
Q Consensus 841 ~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~ 918 (1179)
+++++|+||+.||+|++||+. .......+.+|...|.+ +++++++|++|+.|++|++||.........
T Consensus 440 --------~~g~~l~sgs~Dg~v~vwd~~--~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~ 509 (694)
T 3dm0_A 440 --------SDGQFALSGSWDGELRLWDLA--AGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTI 509 (694)
T ss_dssp --------TTSSEEEEEETTSEEEEEETT--TTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEE
T ss_pred --------CCCCEEEEEeCCCcEEEEECC--CCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceee
Confidence 899999999999999999976 55667788999999986 589999999999999999999876544333
Q ss_pred e---ecCCCcEEEEEEeCC---CEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 001039 919 L---KGHDAQVSCVRMLSG---ERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWD 992 (1179)
Q Consensus 919 ~---~~h~~~V~~l~~s~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD 992 (1179)
. .+|...|.+++|+++ ..+++|+.||+|++||+++++....+.+|.+.|.+++|+|+++++++|+.||.|++||
T Consensus 510 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd 589 (694)
T 3dm0_A 510 SEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWD 589 (694)
T ss_dssp CSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEE
T ss_pred ccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 2 468899999999943 5799999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEeecCCCCeEEEEEcCC-EEEEEeCCCcEEEEEccCCeeeEEeecCC-------------------cCEEEE
Q 001039 993 IRAGRQMHKFLGHTKWIRSIRMDRD-TVITGSDDWTARMWSISRGTCDAVLACHA-------------------GPVQCV 1052 (1179)
Q Consensus 993 ~~~~~~~~~~~~~~~~I~sl~~~~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~-------------------~~V~~l 1052 (1179)
+++++.+..+.. ...+.+++|+++ .+++++.++.|++||+++++.+..+..+. ..++++
T Consensus 590 ~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 668 (694)
T 3dm0_A 590 LAEGKKLYSLEA-NSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSL 668 (694)
T ss_dssp TTTTEEEECCBC-SSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEE
T ss_pred CCCCceEEEecC-CCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeE
Confidence 999998877754 567999999765 44455567779999999998887765321 237899
Q ss_pred EEecCCCEEEEEeCCCcEEEEEcCC
Q 001039 1053 EYSSSDRGIITGSSDGLLRFWENDD 1077 (1179)
Q Consensus 1053 ~~spdg~~l~sgs~Dg~I~iwd~~~ 1077 (1179)
+|+|+|++|++|+.||.|++||+..
T Consensus 669 ~~spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 669 NWSADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp EECTTSSEEEEEETTSEEEEEEC--
T ss_pred EEcCCCCEEEEEcCCCeEEEEeccC
Confidence 9999999999999999999999853
No 71
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.6e-31 Score=308.80 Aligned_cols=282 Identities=16% Similarity=0.245 Sum_probs=240.0
Q ss_pred cccCCcceEEEEEccCCCce-eeccC---c--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeec
Q 001039 764 ASGIGRSWVQSMFSREASSR-SHSFS---R--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVT 837 (1179)
Q Consensus 764 ~~gh~~~i~~~~fSpdg~~l-as~~~---d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~ 837 (1179)
..+|...|.+++|+|+|..+ ++|+. | |++||+.++.. ......+|.+.|++++|+
T Consensus 14 ~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~------------------~~~~~~~~~~~v~~~~~~- 74 (357)
T 3i2n_A 14 QKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDL------------------KLLREIEKAKPIKCGTFG- 74 (357)
T ss_dssp EEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSE------------------EEEEEEEESSCEEEEECT-
T ss_pred ccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcc------------------cceeeecccCcEEEEEEc-
Confidence 36799999999999999655 56654 5 99999997661 122344899999999998
Q ss_pred ccceeccccccCC---CCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEE--------ecCCCEEEEEeCCCcEE
Q 001039 838 KREVWDLVGDRED---AGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--------NSDRGKVVSGSDDQSVL 906 (1179)
Q Consensus 838 ~~~~~~~~~~s~d---~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~--------s~d~~~l~sgs~dg~I~ 906 (1179)
++ +++|++|+.||.|++||+.. .......+.+|...|.++ +++++++++|+.||.|+
T Consensus 75 -----------~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~ 142 (357)
T 3i2n_A 75 -----------ATSLQQRYLATGDFGGNLHIWNLEA-PEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVK 142 (357)
T ss_dssp -----------TCCTTTCCEEEEETTSCEEEECTTS-CSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEE
T ss_pred -----------CCCCCCceEEEecCCCeEEEEeCCC-CCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEE
Confidence 55 79999999999999999873 233567889999999976 58899999999999999
Q ss_pred EEECCCCe-EEEEeecCCC----cEEEEEE----e-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcC--
Q 001039 907 VWDKQTSQ-LLEELKGHDA----QVSCVRM----L-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDD-- 974 (1179)
Q Consensus 907 iwd~~t~~-~~~~~~~h~~----~V~~l~~----s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp-- 974 (1179)
+||+.+++ .+..+..|.+ .+.+++| + ++..+++++.||.|++||+++++.... ..+...|.+++|+|
T Consensus 143 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~ 221 (357)
T 3i2n_A 143 VWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKD 221 (357)
T ss_dssp EECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSS
T ss_pred EEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCC
Confidence 99999886 6777766554 8999984 4 688999999999999999999987555 46788999999999
Q ss_pred -CCCEEEEEeCCCeEEEEeCCCCceeEEee-----cCCCCeEEEEEcCC---EEEEEeCCCcEEEEEccCC---------
Q 001039 975 -STGILAAGGRDAVANIWDIRAGRQMHKFL-----GHTKWIRSIRMDRD---TVITGSDDWTARMWSISRG--------- 1036 (1179)
Q Consensus 975 -~~~~l~sgs~dg~I~iwD~~~~~~~~~~~-----~~~~~I~sl~~~~~---~l~sgs~dg~I~iwd~~~~--------- 1036 (1179)
+++.+++|+.||.|++||+++++....+. +|...|.+++|+++ ++++|+.||.|++||++++
T Consensus 222 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 301 (357)
T 3i2n_A 222 ISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSE 301 (357)
T ss_dssp SSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTT
T ss_pred CCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCC
Confidence 99999999999999999999877665554 89999999999765 7999999999999999854
Q ss_pred ----------eeeEEeecCCcCEEEEEEecCCCEEE-EEeCCCcEEEEEcCC
Q 001039 1037 ----------TCDAVLACHAGPVQCVEYSSSDRGII-TGSSDGLLRFWENDD 1077 (1179)
Q Consensus 1037 ----------~~~~~~~~h~~~V~~l~~spdg~~l~-sgs~Dg~I~iwd~~~ 1077 (1179)
+.+..+.+|...|++++|+|++++++ +|+.||.|++||+.+
T Consensus 302 g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~ 353 (357)
T 3i2n_A 302 GIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK 353 (357)
T ss_dssp SCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred CCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence 45677889999999999999999998 899999999999987
No 72
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.8e-31 Score=314.17 Aligned_cols=335 Identities=17% Similarity=0.202 Sum_probs=236.0
Q ss_pred CcccccCCcceEEEEEcc-CCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeec
Q 001039 761 PAEASGIGRSWVQSMFSR-EASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVT 837 (1179)
Q Consensus 761 ~~~~~gh~~~i~~~~fSp-dg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~ 837 (1179)
.....+|...|.+++|+| +|+++++|+.| |++||+.++........... .........+|.+.|++++|+|
T Consensus 36 ~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~ 109 (408)
T 4a11_B 36 RDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAV------CSIGRDHPDVHRYSVETVQWYP 109 (408)
T ss_dssp EEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEE------EEECTTCTTCCSSCEEEEEECT
T ss_pred eeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccc------ccccccccccCCCcEEEEEEcc
Confidence 344567999999999999 99999999988 99999998763221000000 0000001136999999999983
Q ss_pred ccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEE--Eec---CCCEEEEEeCCCcEEEEECCC
Q 001039 838 KREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INS---DRGKVVSGSDDQSVLVWDKQT 912 (1179)
Q Consensus 838 ~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~--~s~---d~~~l~sgs~dg~I~iwd~~t 912 (1179)
.++++|++|+.||.|++||+. .......+. +...+.+ +++ ++..+++|+.||.|++||+.+
T Consensus 110 -----------~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 175 (408)
T 4a11_B 110 -----------HDTGMFTSSSFDKTLKVWDTN--TLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS 175 (408)
T ss_dssp -----------TCTTCEEEEETTSEEEEEETT--TTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS
T ss_pred -----------CCCcEEEEEeCCCeEEEeeCC--CCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC
Confidence 278899999999999999986 344444444 5555554 344 566999999999999999999
Q ss_pred CeEEEEeecCCCcEEEEEEe-CCC-EEEEEEcCCeEEEEeCCCCe-EEEEe---------------ccCCCcEEEEEEcC
Q 001039 913 SQLLEELKGHDAQVSCVRML-SGE-RVLTASHDGTVKMWDVRTDT-CVATV---------------GRCSSAVLCMEYDD 974 (1179)
Q Consensus 913 ~~~~~~~~~h~~~V~~l~~s-~~~-~l~sgs~dg~I~iwd~~~~~-~~~~~---------------~~~~~~v~~l~~sp 974 (1179)
++.+..+.+|...|.+++|+ ++. .+++|+.||.|++||++++. ....+ ..|...|.+++|+|
T Consensus 176 ~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 255 (408)
T 4a11_B 176 GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS 255 (408)
T ss_dssp SCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT
T ss_pred cceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC
Confidence 99999999999999999999 455 58899999999999998775 44444 46788999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEeecCCC------CeEEEEE-cCCEEEEEeCCCcEEEEEccCCeeeEEeecCCc
Q 001039 975 STGILAAGGRDAVANIWDIRAGRQMHKFLGHTK------WIRSIRM-DRDTVITGSDDWTARMWSISRGTCDAVLACHAG 1047 (1179)
Q Consensus 975 ~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~------~I~sl~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~ 1047 (1179)
+++++++++.||.|++||+++++.......+.. ....... ....+++++.|+.|++||+.+++.+..+.+|.+
T Consensus 256 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~ 335 (408)
T 4a11_B 256 DGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYK 335 (408)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSS
T ss_pred CCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCC
Confidence 999999999999999999999877655433211 1112222 344777788899999999999999999999999
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEEe-cCCCEEEEEECCCcEEEEeCC
Q 001039 1048 PVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSIN-AGDHWLGIGAADNSMSLFHRP 1119 (1179)
Q Consensus 1048 ~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis-~dg~~lasgs~Dg~I~iwd~~ 1119 (1179)
.|++++|+|++++|++|+.||.|++||+.+.+ .+.....+.. ...+. .......+++.|+.+++|+.+
T Consensus 336 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 336 TVDCCVFQSNFQELYSGSRDCNILAWVPSLYE---PVPDDDETTT-KSQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEEECC-------------------------------------------
T ss_pred eEEEEEEcCCCCEEEEECCCCeEEEEeCCCCC---ccCCCCceEe-ccccccccceeecccCccCceeecCCc
Confidence 99999999999999999999999999999843 3332222221 12232 344556677789999999875
No 73
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.9e-31 Score=312.75 Aligned_cols=285 Identities=14% Similarity=0.237 Sum_probs=235.2
Q ss_pred CceeEEEeccccccEEEE--ecCC-CEEEEEeCCCcEEEEECCCCeEEEEee--cCCCcEEEEEEeC--CCEEEEEEcCC
Q 001039 872 GSELRATLKGHTRTVRAI--NSDR-GKVVSGSDDQSVLVWDKQTSQLLEELK--GHDAQVSCVRMLS--GERVLTASHDG 944 (1179)
Q Consensus 872 ~~~~~~~l~~h~~~v~~~--s~d~-~~l~sgs~dg~I~iwd~~t~~~~~~~~--~h~~~V~~l~~s~--~~~l~sgs~dg 944 (1179)
.......+.+|...|.++ ++++ +++++|+.||+|++||+.+++....+. +|...|.+++|++ +..+++++.||
T Consensus 62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~ 141 (383)
T 3ei3_B 62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRG 141 (383)
T ss_dssp TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTT
T ss_pred ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCC
Confidence 345567889999999965 7888 899999999999999999888777765 6999999999995 47899999999
Q ss_pred eEEEEeCCCCeEEEEecc---CCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcCC---E
Q 001039 945 TVKMWDVRTDTCVATVGR---CSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD---T 1018 (1179)
Q Consensus 945 ~I~iwd~~~~~~~~~~~~---~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~---~ 1018 (1179)
.|++||+++ .....+.. +...|.+++|+|+++++++|+.||.|++||+ +++.+..+.+|...|.+++|+++ .
T Consensus 142 ~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~ 219 (383)
T 3ei3_B 142 ATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWL 219 (383)
T ss_dssp EEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTE
T ss_pred EEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCE
Confidence 999999986 44444433 3478999999999999999999999999999 57888899999999999999654 8
Q ss_pred EEEEeCCCcEEEEEccC----CeeeEEeecCCcCEEEEEEec-CCCEEEEEeCCCcEEEEEcCCCCcceEEEeec----c
Q 001039 1019 VITGSDDWTARMWSISR----GTCDAVLACHAGPVQCVEYSS-SDRGIITGSSDGLLRFWENDDAGGIKCVKNVT----I 1089 (1179)
Q Consensus 1019 l~sgs~dg~I~iwd~~~----~~~~~~~~~h~~~V~~l~~sp-dg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~----~ 1089 (1179)
+++|+.||.|++||+++ +..+..+ +|...|++++|+| ++++|++++.||.|++||+.+......+.... .
T Consensus 220 l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 298 (383)
T 3ei3_B 220 MATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQ 298 (383)
T ss_dssp EEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCT
T ss_pred EEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccc
Confidence 99999999999999998 6666666 6999999999999 99999999999999999999855433332111 1
Q ss_pred cCc----------eE--EEEecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCC--CcccEEEEEEc
Q 001039 1090 HSS----------AI--LSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQK--TVAVVRCIASD 1155 (1179)
Q Consensus 1090 h~~----------~i--~sis~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~--h~~~V~~v~fs 1155 (1179)
|.. .+ .++++++++ +|+.||.|++||+.+. +++..+.+ |.+.+.+++|+
T Consensus 299 ~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~---------------~~~~~l~~~~~~~~~~~~~~s 361 (383)
T 3ei3_B 299 HLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSG---------------GLVHQLRDPNAAGIISLNKFS 361 (383)
T ss_dssp TSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTC---------------CEEEEECBTTBCSCCCEEEEC
T ss_pred cccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCC---------------ceeeeecCCCCCceEEEEEEe
Confidence 111 11 333566666 7779999999999733 34444544 56788888999
Q ss_pred CCCCEEEEEeCCCcEEEEECCC
Q 001039 1156 LERKRICSGGRNGLLRLWEATI 1177 (1179)
Q Consensus 1156 pdg~~Lasgs~Dg~I~vWdv~t 1177 (1179)
|||++|++|+ ||.|++||+++
T Consensus 362 ~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 362 PTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp TTSSEEEEEE-TTEEEEEECC-
T ss_pred cCccEEEEec-CCcEEEEecCC
Confidence 9999999997 99999999986
No 74
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.7e-31 Score=309.43 Aligned_cols=288 Identities=13% Similarity=0.236 Sum_probs=241.8
Q ss_pred EEeccccccEEEE--ecC----CCEEEEEeCCCcEEEEECCCCeEEEEeec-----CCCcEEEEEEe-C----CCEEEEE
Q 001039 877 ATLKGHTRTVRAI--NSD----RGKVVSGSDDQSVLVWDKQTSQLLEELKG-----HDAQVSCVRML-S----GERVLTA 940 (1179)
Q Consensus 877 ~~l~~h~~~v~~~--s~d----~~~l~sgs~dg~I~iwd~~t~~~~~~~~~-----h~~~V~~l~~s-~----~~~l~sg 940 (1179)
....+|...|.++ +|+ ...+++++.++.|++||+.+++.+..+.. |...|.+++|+ + +.++++|
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 3456899999975 663 56677777788999999998877766653 55789999999 4 4689999
Q ss_pred EcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEe---ecCCCCeEEEEEcC
Q 001039 941 SHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDD-STGILAAGGRDAVANIWDIRAGRQMHKF---LGHTKWIRSIRMDR 1016 (1179)
Q Consensus 941 s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp-~~~~l~sgs~dg~I~iwD~~~~~~~~~~---~~~~~~I~sl~~~~ 1016 (1179)
+.||.|++||+.+++.+..+..|...|.+++|+| +++++++|+.||.|++||+++++.+..+ .+|...|.+++|++
T Consensus 92 ~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 171 (366)
T 3k26_A 92 GSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL 171 (366)
T ss_dssp ETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECT
T ss_pred cCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECC
Confidence 9999999999999999999999999999999999 9999999999999999999999998888 68999999999964
Q ss_pred --CEEEEEeCCCcEEEEEccCCeeeEEee----------------------------cCCcCEEEEEEecCCCEEEEEeC
Q 001039 1017 --DTVITGSDDWTARMWSISRGTCDAVLA----------------------------CHAGPVQCVEYSSSDRGIITGSS 1066 (1179)
Q Consensus 1017 --~~l~sgs~dg~I~iwd~~~~~~~~~~~----------------------------~h~~~V~~l~~spdg~~l~sgs~ 1066 (1179)
+.+++++.||.|++||+++++....+. .|...|.+++|+ ++++++++.
T Consensus 172 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~ 249 (366)
T 3k26_A 172 LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSC 249 (366)
T ss_dssp TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECS
T ss_pred CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEec
Confidence 599999999999999998876543333 399999999999 789999999
Q ss_pred CCcEEEEEcCCCCc-----------ceEEEeecccCceEEEE--ecC--CCEEEEEECCCcEEEEeCCCCCcCcccCCCC
Q 001039 1067 DGLLRFWENDDAGG-----------IKCVKNVTIHSSAILSI--NAG--DHWLGIGAADNSMSLFHRPQERLGGFSGTGS 1131 (1179)
Q Consensus 1067 Dg~I~iwd~~~~~~-----------~~~~~~~~~h~~~i~si--s~d--g~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~ 1131 (1179)
||.|++||+.+... ...+..+..|...+.++ +++ +++|++|+.||.|++||+.+.+
T Consensus 250 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~--------- 320 (366)
T 3k26_A 250 ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVED--------- 320 (366)
T ss_dssp SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSS---------
T ss_pred CCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCC---------
Confidence 99999999987432 24567777888777554 788 9999999999999999998432
Q ss_pred ccccceeeeecCCC--cccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001039 1132 KMSGWQLYRTPQKT--VAVVRCIASDLERKRICSGGRNGLLRLWEATI 1177 (1179)
Q Consensus 1132 ~~~~~~~~~~~~~h--~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~t 1177 (1179)
... .....+.+| ...|++++|+|++++|++|+.||.|++||+.+
T Consensus 321 ~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 321 PHK--AKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp GGG--CEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred Ccc--ccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 111 233345566 79999999999999999999999999999865
No 75
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.9e-31 Score=312.42 Aligned_cols=318 Identities=17% Similarity=0.288 Sum_probs=251.9
Q ss_pred ceEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceeccccccC-CCCEEEEEeCCCcEEEEc
Q 001039 789 RVRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDRE-DAGFFISGSTDCLVKIWD 867 (1179)
Q Consensus 789 dI~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~-d~~~Lasgs~Dg~I~lWd 867 (1179)
++++|+.+.+. ....+.+|.+.|++++|+ | ++++|++|+.||.|++||
T Consensus 24 ~~~v~~~~~~~-------------------~~~~~~~h~~~v~~~~~s------------~~~~~~l~~~~~dg~i~iw~ 72 (408)
T 4a11_B 24 TRRVLGLELNK-------------------DRDVERIHGGGINTLDIE------------PVEGRYMLSGGSDGVIVLYD 72 (408)
T ss_dssp HHHHHTEEECT-------------------TEEECCCCSSCEEEEEEC------------TTTCCEEEEEETTSCEEEEE
T ss_pred cceeeccccCc-------------------ceeeeeccCCcEEEEEEe------------cCCCCEEEEEcCCCeEEEEE
Confidence 38899988766 678899999999999998 7 999999999999999999
Q ss_pred CCCCCceeEEEe-----------ccccccEEEE--ec-CCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEeC
Q 001039 868 PSLRGSELRATL-----------KGHTRTVRAI--NS-DRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLS 933 (1179)
Q Consensus 868 ~~~~~~~~~~~l-----------~~h~~~v~~~--s~-d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s~ 933 (1179)
+........... .+|...|.++ ++ ++..+++++.||.|++||+.+++....+. +...+.++.+.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~ 151 (408)
T 4a11_B 73 LENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSP 151 (408)
T ss_dssp CCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECS
T ss_pred CCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeec
Confidence 874333222211 3588899865 67 77899999999999999999999988877 677899999872
Q ss_pred ----CCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCc-eeEEeecCCC
Q 001039 934 ----GERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTG-ILAAGGRDAVANIWDIRAGR-QMHKFLGHTK 1007 (1179)
Q Consensus 934 ----~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~sgs~dg~I~iwD~~~~~-~~~~~~~~~~ 1007 (1179)
+..+++|+.||.|++||+++++.+..+..|...|.+++|+|+++ .+++|+.||.|++||++++. .+..+..+..
T Consensus 152 ~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 231 (408)
T 4a11_B 152 VSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNG 231 (408)
T ss_dssp SCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTT
T ss_pred CCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccccc
Confidence 44899999999999999999999999999999999999999998 58899999999999998875 3333333222
Q ss_pred CeEEEEEcCCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEee
Q 001039 1008 WIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNV 1087 (1179)
Q Consensus 1008 ~I~sl~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~ 1087 (1179)
. ...........|...|++++|+|+++++++++.||.|++||+.++.........
T Consensus 232 ~-------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 286 (408)
T 4a11_B 232 K-------------------------KSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGK 286 (408)
T ss_dssp C-------------------------SCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCC
T ss_pred c-------------------------cceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecccc
Confidence 1 011112233568899999999999999999999999999999985432211110
Q ss_pred ---cccCceEEEE-ecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEE
Q 001039 1088 ---TIHSSAILSI-NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICS 1163 (1179)
Q Consensus 1088 ---~~h~~~i~si-s~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Las 1163 (1179)
.......... ...+..+++++.|+.|++||+.+ + +....+.+|.+.|++++|+|++++|++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~---------~------~~~~~~~~~~~~v~~~~~s~~~~~l~s 351 (408)
T 4a11_B 287 VCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYS---------G------EQITMLKGHYKTVDCCVFQSNFQELYS 351 (408)
T ss_dssp CCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTT---------C------CEEEEECCCSSCEEEEEEETTTTEEEE
T ss_pred ccccccccceeEEecCCCceEEEEecCCEEEEEECcC---------C------cceeeeccCCCeEEEEEEcCCCCEEEE
Confidence 0011111222 34456677778899999999973 3 566777899999999999999999999
Q ss_pred EeCCCcEEEEECCCC
Q 001039 1164 GGRNGLLRLWEATIN 1178 (1179)
Q Consensus 1164 gs~Dg~I~vWdv~tg 1178 (1179)
|+.||.|++||+.++
T Consensus 352 ~~~dg~i~iw~~~~~ 366 (408)
T 4a11_B 352 GSRDCNILAWVPSLY 366 (408)
T ss_dssp EETTSCEEEEEECC-
T ss_pred ECCCCeEEEEeCCCC
Confidence 999999999999875
No 76
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=4.4e-31 Score=305.11 Aligned_cols=304 Identities=13% Similarity=0.185 Sum_probs=246.2
Q ss_pred eeEEEeccccccEEE--EecCCCEEE-EEeC---CCcEEEEECCCCeEEEEe-ecCCCcEEEEEEeC----CCEEEEEEc
Q 001039 874 ELRATLKGHTRTVRA--INSDRGKVV-SGSD---DQSVLVWDKQTSQLLEEL-KGHDAQVSCVRMLS----GERVLTASH 942 (1179)
Q Consensus 874 ~~~~~l~~h~~~v~~--~s~d~~~l~-sgs~---dg~I~iwd~~t~~~~~~~-~~h~~~V~~l~~s~----~~~l~sgs~ 942 (1179)
.......+|...|.+ ++|++..++ +|+. ||.|++||+.+++..... .+|...|.+++|++ +..+++|+.
T Consensus 9 ~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~ 88 (357)
T 3i2n_A 9 IIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDF 88 (357)
T ss_dssp EEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEET
T ss_pred HhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecC
Confidence 344566889999996 478886655 5554 899999999998876543 37899999999994 489999999
Q ss_pred CCeEEEEeCCCCe-EEEEeccCCCcEEEEEE------cCCCCEEEEEeCCCeEEEEeCCCCc-eeEEeecCCC----CeE
Q 001039 943 DGTVKMWDVRTDT-CVATVGRCSSAVLCMEY------DDSTGILAAGGRDAVANIWDIRAGR-QMHKFLGHTK----WIR 1010 (1179)
Q Consensus 943 dg~I~iwd~~~~~-~~~~~~~~~~~v~~l~~------sp~~~~l~sgs~dg~I~iwD~~~~~-~~~~~~~~~~----~I~ 1010 (1179)
||.|++||+.+++ .+..+..|...|.+++| +++++.+++++.||.|++||+++++ .+..+..+.+ .+.
T Consensus 89 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~ 168 (357)
T 3i2n_A 89 GGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCW 168 (357)
T ss_dssp TSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEE
T ss_pred CCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceE
Confidence 9999999999988 88889999999999955 6799999999999999999999987 6777766554 788
Q ss_pred EEEE------cCCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEec---CCCEEEEEeCCCcEEEEEcCCCCcc
Q 001039 1011 SIRM------DRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSS---SDRGIITGSSDGLLRFWENDDAGGI 1081 (1179)
Q Consensus 1011 sl~~------~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp---dg~~l~sgs~Dg~I~iwd~~~~~~~ 1081 (1179)
++++ +++.+++++.||.|++||+++++.... ..|...|++++|+| +++++++|+.||.|++||+.+....
T Consensus 169 ~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 247 (357)
T 3i2n_A 169 TVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPT 247 (357)
T ss_dssp EEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETT
T ss_pred EEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcc
Confidence 8883 566999999999999999999987554 56889999999999 9999999999999999999874333
Q ss_pred eEEE--eecccCceEEEE--ecCCC-EEEEEECCCcEEEEeCCCCCcCc-ccCCCCcc---ccceeeeecCCCcccEEEE
Q 001039 1082 KCVK--NVTIHSSAILSI--NAGDH-WLGIGAADNSMSLFHRPQERLGG-FSGTGSKM---SGWQLYRTPQKTVAVVRCI 1152 (1179)
Q Consensus 1082 ~~~~--~~~~h~~~i~si--s~dg~-~lasgs~Dg~I~iwd~~~~~~~~-~~~~g~~~---~~~~~~~~~~~h~~~V~~v 1152 (1179)
..+. ...+|...|.++ +|++. ++++|+.||.|++||+....... ....|... ..+..+....+|.+.|+++
T Consensus 248 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~ 327 (357)
T 3i2n_A 248 KGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSL 327 (357)
T ss_dssp TEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEE
T ss_pred cceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEE
Confidence 3222 344788888766 78888 89999999999999987543211 11111111 1235677788999999999
Q ss_pred EEcCCCCEEE-EEeCCCcEEEEECCCC
Q 001039 1153 ASDLERKRIC-SGGRNGLLRLWEATIN 1178 (1179)
Q Consensus 1153 ~fspdg~~La-sgs~Dg~I~vWdv~tg 1178 (1179)
+|+|+|++|+ +|+.||.|++||+.+.
T Consensus 328 ~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 328 DWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp EECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred EEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 9999999998 8999999999999864
No 77
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=5.9e-31 Score=306.13 Aligned_cols=283 Identities=13% Similarity=0.141 Sum_probs=241.9
Q ss_pred ccCCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeeccccee
Q 001039 765 SGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVW 842 (1179)
Q Consensus 765 ~gh~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~ 842 (1179)
..|...|.+++|+|||+++++++.+ |++||+.+++. ..+..+.+|.+.|++++|+
T Consensus 5 ~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~-----------------~~~~~~~~h~~~v~~~~~~------ 61 (372)
T 1k8k_C 5 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-----------------VQVHELKEHNGQVTGVDWA------ 61 (372)
T ss_dssp ESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE-----------------EEEEEEECCSSCEEEEEEE------
T ss_pred cccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE-----------------EeeeeecCCCCcccEEEEe------
Confidence 3478899999999999999999877 99999986531 1467889999999999998
Q ss_pred ccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEE--EecCCCEEEEEeCCCcEEEEECCCCe----EE
Q 001039 843 DLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQ----LL 916 (1179)
Q Consensus 843 ~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~--~s~d~~~l~sgs~dg~I~iwd~~t~~----~~ 916 (1179)
|++++|++|+.||.|++||+..........+.+|...|.+ ++++++++++|+.||.|++||+.+++ ..
T Consensus 62 ------~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~ 135 (372)
T 1k8k_C 62 ------PDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK 135 (372)
T ss_dssp ------TTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE
T ss_pred ------CCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeee
Confidence 8999999999999999999863333334455778888885 57999999999999999999998876 23
Q ss_pred EEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeC------------------CCCeEEEEeccCCCcEEEEEEcCCCC
Q 001039 917 EELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDV------------------RTDTCVATVGRCSSAVLCMEYDDSTG 977 (1179)
Q Consensus 917 ~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~------------------~~~~~~~~~~~~~~~v~~l~~sp~~~ 977 (1179)
.....|...|.+++|+ ++..+++|+.||.|++||+ .+++.+..+..|...|.+++|+|+++
T Consensus 136 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 215 (372)
T 1k8k_C 136 HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS 215 (372)
T ss_dssp EECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS
T ss_pred eeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCC
Confidence 3346789999999999 6789999999999999995 46788888989999999999999999
Q ss_pred EEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcCC--EEEEEeCCCcEEEEEccC--Cee---------------
Q 001039 978 ILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISR--GTC--------------- 1038 (1179)
Q Consensus 978 ~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~--~l~sgs~dg~I~iwd~~~--~~~--------------- 1038 (1179)
++++++.||.|++||+++++.+..+..|...|.+++|+++ ++++| .||.|++||+++ ++.
T Consensus 216 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (372)
T 1k8k_C 216 RVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQR 294 (372)
T ss_dssp EEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC------
T ss_pred EEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhh
Confidence 9999999999999999999999999999999999999643 55555 999999999988 421
Q ss_pred -----------------e------EEe-ecCCcCEEEEEEe-cCC---CEEEEEeCCCcEEEEEcCC
Q 001039 1039 -----------------D------AVL-ACHAGPVQCVEYS-SSD---RGIITGSSDGLLRFWENDD 1077 (1179)
Q Consensus 1039 -----------------~------~~~-~~h~~~V~~l~~s-pdg---~~l~sgs~Dg~I~iwd~~~ 1077 (1179)
. ..+ .+|.+.|++++|+ ++| ++|++|+.||.|++||+.+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 295 GLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp --CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred hcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence 0 222 4899999999976 666 9999999999999999876
No 78
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-32 Score=321.01 Aligned_cols=327 Identities=12% Similarity=0.181 Sum_probs=235.4
Q ss_pred EEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEE--EecCCCEEEE
Q 001039 821 RIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVS 898 (1179)
Q Consensus 821 ~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~--~s~d~~~l~s 898 (1179)
.....|.++|++++|+ |++++|++|+.||+|++||+..........+.+|...|.+ +++++++|++
T Consensus 5 ~~~~~~~~~v~~~~~s------------~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s 72 (377)
T 3dwl_C 5 QVLHILPKPSYEHAFN------------SQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVT 72 (377)
T ss_dssp EEEEECSSCCSCCEEC------------SSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEE
T ss_pred eeEecCCCcEEEEEEC------------CCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEE
Confidence 4456678899999998 8999999999999999999873322667788999999986 5899999999
Q ss_pred EeCCCcEEEEECCCCe---EEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCe---EEEEecc-CCCcEEEE
Q 001039 899 GSDDQSVLVWDKQTSQ---LLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDT---CVATVGR-CSSAVLCM 970 (1179)
Q Consensus 899 gs~dg~I~iwd~~t~~---~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~---~~~~~~~-~~~~v~~l 970 (1179)
|+.||+|++||+.+++ ....+.+|...|.+++|+ +++.+++|+.||.|++||+++++ ....+.. |...|.++
T Consensus 73 ~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~ 152 (377)
T 3dwl_C 73 CSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSL 152 (377)
T ss_dssp EETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEE
T ss_pred EeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEE
Confidence 9999999999999887 677788999999999999 68899999999999999999887 3677777 99999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCC------------------CCceeEEeecCCCCeEEEEEcC--CEEEEEeCCCcEEE
Q 001039 971 EYDDSTGILAAGGRDAVANIWDIR------------------AGRQMHKFLGHTKWIRSIRMDR--DTVITGSDDWTARM 1030 (1179)
Q Consensus 971 ~~sp~~~~l~sgs~dg~I~iwD~~------------------~~~~~~~~~~~~~~I~sl~~~~--~~l~sgs~dg~I~i 1030 (1179)
+|+|+++++++|+.||.|++||++ .++.+..+ +|...|.+++|++ +++++++.||+|++
T Consensus 153 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~i 231 (377)
T 3dwl_C 153 DWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTI 231 (377)
T ss_dssp EECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-
T ss_pred EEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEE
Confidence 999999999999999999999985 34556666 8999999999965 58999999999999
Q ss_pred EEccCCee----eEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEEe-cC-----
Q 001039 1031 WSISRGTC----DAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSIN-AG----- 1100 (1179)
Q Consensus 1031 wd~~~~~~----~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis-~d----- 1100 (1179)
||+++++. +..+.+|...|++++|+|++++|++|+.++.+ +|+....+ ......+........... .+
T Consensus 232 wd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (377)
T 3dwl_C 232 AYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESG-WAHTRDLDAGTSKTSFTHTGNTGEGR 309 (377)
T ss_dssp CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC----CCSBCCCSCCCCCCBSSSSSBCCCC
T ss_pred EECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCc-eEEEeeeccccccccccccccccccc
Confidence 99999987 77888999999999999999999999776655 77665422 111211111110000000 00
Q ss_pred CCEEEE--EECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCC-C---EEEEEeCCCcEEEEE
Q 001039 1101 DHWLGI--GAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLER-K---RICSGGRNGLLRLWE 1174 (1179)
Q Consensus 1101 g~~las--gs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg-~---~Lasgs~Dg~I~vWd 1174 (1179)
+..-+. .......+..+.... .. ........|.+.|+++++.+++ . .|+|||.||.|++||
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~g~----------~~---~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWd 376 (377)
T 3dwl_C 310 EEEGPVSFTALRSTFRNMDLKGS----------SQ---SISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWT 376 (377)
T ss_dssp CC--------------------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEEC
T ss_pred ccccccccccccccccchhhccc----------cc---cccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEec
Confidence 000000 000011111121100 00 1122345799999999976543 3 699999999999998
Q ss_pred C
Q 001039 1175 A 1175 (1179)
Q Consensus 1175 v 1175 (1179)
+
T Consensus 377 l 377 (377)
T 3dwl_C 377 L 377 (377)
T ss_dssp C
T ss_pred C
Confidence 6
No 79
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-31 Score=318.41 Aligned_cols=302 Identities=13% Similarity=0.205 Sum_probs=242.2
Q ss_pred cCCCCCCCC-----CCCCCCcc-c-ccCCcceEEEEEcc-CCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCccc
Q 001039 747 PSPLSKDAT-----NDDQQPAE-A-SGIGRSWVQSMFSR-EASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKI 816 (1179)
Q Consensus 747 fSP~g~~~~-----~~~~~~~~-~-~gh~~~i~~~~fSp-dg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~ 816 (1179)
|+|++.... ...++.+. + .+|...|.+++|+| ||+++|+|+.| |++||+.+......
T Consensus 35 f~~~~~~~~~~~~w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~------------- 101 (437)
T 3gre_A 35 FGPIQEIVRSPNMGNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEV------------- 101 (437)
T ss_dssp GCCCCCCCCCCCGGGCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCC-------------
T ss_pred cCCccccccccccccccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcc-------------
Confidence 678777321 12334333 3 56778999999999 99999999998 99999986221000
Q ss_pred ccceEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCC-CceeEEEecc------------cc
Q 001039 817 QSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLR-GSELRATLKG------------HT 883 (1179)
Q Consensus 817 ~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~-~~~~~~~l~~------------h~ 883 (1179)
......+ +|.+.|++++|+ +++++|++|+.||+|++||+... .........+ +.
T Consensus 102 ~~~~~~~-~h~~~v~~~~~~------------~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 168 (437)
T 3gre_A 102 YSSSLTY-DCSSTVTQITMI------------PNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKN 168 (437)
T ss_dssp CSCSEEE-ECSSCEEEEEEC------------TTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSC
T ss_pred cceeeec-cCCCCEEEEEEe------------CCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccc
Confidence 0012233 599999999998 89999999999999999997411 1222222222 33
Q ss_pred ccEEEE----ecCCCEEEEEeCCCcEEEEECCCCeEEEEeec--CCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeE
Q 001039 884 RTVRAI----NSDRGKVVSGSDDQSVLVWDKQTSQLLEELKG--HDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTC 956 (1179)
Q Consensus 884 ~~v~~~----s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~--h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~ 956 (1179)
..+.++ ++++.++++|+.||+|++||+.+++.+..+.+ |...|++++|+ ++.++++|+.||+|++||+++++.
T Consensus 169 ~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 248 (437)
T 3gre_A 169 EYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVL 248 (437)
T ss_dssp CCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEE
T ss_pred cCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccE
Confidence 444443 47899999999999999999999999999988 89999999999 688999999999999999999999
Q ss_pred EEEec-cCCCcEEEEEEcC----CCCEEEEEeCCCeEEEEeCCCCceeEEeecC--------------------------
Q 001039 957 VATVG-RCSSAVLCMEYDD----STGILAAGGRDAVANIWDIRAGRQMHKFLGH-------------------------- 1005 (1179)
Q Consensus 957 ~~~~~-~~~~~v~~l~~sp----~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~-------------------------- 1005 (1179)
+..+. .+...|.+++|+| ++.++++|+.||.|++||+++++.+..+.+|
T Consensus 249 ~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 328 (437)
T 3gre_A 249 IRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRS 328 (437)
T ss_dssp EEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCS
T ss_pred EEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceeccccc
Confidence 99886 7788999996664 6779999999999999999999988877644
Q ss_pred CCCeEEEEEcC-CEEEEEeCCCcEEEEEccCCeeeEEeec-------------------------------------CCc
Q 001039 1006 TKWIRSIRMDR-DTVITGSDDWTARMWSISRGTCDAVLAC-------------------------------------HAG 1047 (1179)
Q Consensus 1006 ~~~I~sl~~~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~-------------------------------------h~~ 1047 (1179)
...|+++++++ +++++|+.||.|++||+.+++....+.+ |..
T Consensus 329 ~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 408 (437)
T 3gre_A 329 LNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHD 408 (437)
T ss_dssp GGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CC
T ss_pred CCceEEEEECCceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCccccccc
Confidence 44577888864 4899999999999999999887776665 889
Q ss_pred CEEEEEEecC--CCEEEEEeCCCcEEEEE
Q 001039 1048 PVQCVEYSSS--DRGIITGSSDGLLRFWE 1074 (1179)
Q Consensus 1048 ~V~~l~~spd--g~~l~sgs~Dg~I~iwd 1074 (1179)
.|++++|+++ +.+|++|+.||.|++|+
T Consensus 409 ~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 409 IINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp CEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 9999999998 88999999999999995
No 80
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-30 Score=308.58 Aligned_cols=286 Identities=21% Similarity=0.338 Sum_probs=241.8
Q ss_pred CCcccccCCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEec-ccCceEEEEee
Q 001039 760 QPAEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRG-HAGAITALHCV 836 (1179)
Q Consensus 760 ~~~~~~gh~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g-H~~~V~~v~~s 836 (1179)
+.....+|...+...++++++..+++++.+ |++||+.++. ....+.. |.+.|++++|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~-------------------~~~~~~~~~~~~v~~v~~s 143 (401)
T 4aez_A 83 RVLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGS-------------------VSALAETDESTYVASVKWS 143 (401)
T ss_dssp EEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCC-------------------EEEEEECCTTCCEEEEEEC
T ss_pred eeeeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCc-------------------EeEeeecCCCCCEEEEEEC
Confidence 334445666654443334344556666666 9999999876 4555555 89999999998
Q ss_pred cccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEEEeCCCcEEEEECC-CCeE
Q 001039 837 TKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQ-TSQL 915 (1179)
Q Consensus 837 ~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~sgs~dg~I~iwd~~-t~~~ 915 (1179)
|++++|++|+.||.|++||+. .......+.+|...|.+++.+++.+++|+.||.|++||+. .+..
T Consensus 144 ------------~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 209 (401)
T 4aez_A 144 ------------HDGSFLSVGLGNGLVDIYDVE--SQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQ 209 (401)
T ss_dssp ------------TTSSEEEEEETTSCEEEEETT--TCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCE
T ss_pred ------------CCCCEEEEECCCCeEEEEECc--CCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcce
Confidence 899999999999999999976 4566788899999999998899999999999999999998 5677
Q ss_pred EEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCC-EEEEEe--CCCeEEEE
Q 001039 916 LEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTG-ILAAGG--RDAVANIW 991 (1179)
Q Consensus 916 ~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~sgs--~dg~I~iw 991 (1179)
+..+.+|...|.+++|+ ++..+++|+.||.|++||+++++....+..|...|.+++|+|++. ++++|+ .||.|++|
T Consensus 210 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~ 289 (401)
T 4aez_A 210 IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFW 289 (401)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEE
T ss_pred eeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEE
Confidence 88899999999999999 688999999999999999999999999999999999999999765 555554 69999999
Q ss_pred eCCCCceeEEeecCCCCeEEEEEcC--CEEEE--EeCCCcEEEEEccCCeeeEE--eecCCcCEEEEEEecCCCEEEEEe
Q 001039 992 DIRAGRQMHKFLGHTKWIRSIRMDR--DTVIT--GSDDWTARMWSISRGTCDAV--LACHAGPVQCVEYSSSDRGIITGS 1065 (1179)
Q Consensus 992 D~~~~~~~~~~~~~~~~I~sl~~~~--~~l~s--gs~dg~I~iwd~~~~~~~~~--~~~h~~~V~~l~~spdg~~l~sgs 1065 (1179)
|+++++.+..+. +...+.+++|++ ..+++ |+.||.|++||+.+++.... +.+|.+.|++++|+|+|++|++++
T Consensus 290 d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~ 368 (401)
T 4aez_A 290 NAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAA 368 (401)
T ss_dssp ETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEEC
T ss_pred ECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEe
Confidence 999999988884 667899999954 47777 44899999999999765544 668999999999999999999999
Q ss_pred CCCcEEEEEcCCCC
Q 001039 1066 SDGLLRFWENDDAG 1079 (1179)
Q Consensus 1066 ~Dg~I~iwd~~~~~ 1079 (1179)
.||.|++||+.+++
T Consensus 369 ~dg~i~iw~~~~~~ 382 (401)
T 4aez_A 369 SDENLKFWRVYDGD 382 (401)
T ss_dssp TTSEEEEEECCC--
T ss_pred CCCcEEEEECCCCc
Confidence 99999999999854
No 81
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.2e-30 Score=294.98 Aligned_cols=253 Identities=19% Similarity=0.302 Sum_probs=216.4
Q ss_pred eEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEE--ec--CCCE
Q 001039 820 IRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NS--DRGK 895 (1179)
Q Consensus 820 ~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~--s~--d~~~ 895 (1179)
+..+.+|.+.|++++|+ ++|++||+|+.||+|++||+..........+.+|...|.++ ++ ++++
T Consensus 2 ~~~~~~h~~~V~~~~~s------------~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~ 69 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMD------------YYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTI 69 (297)
T ss_dssp CEECCSCSSCEEEEEEC------------TTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSE
T ss_pred ceeccCCcCceEEEEEC------------CCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCE
Confidence 34678999999999998 89999999999999999998644456778899999999976 44 3899
Q ss_pred EEEEeCCCcEEEEECCCCe--EEEEeecCCCcEEEEEEeC---CCEEEEEEcCCeEEEEeCCCCe--EEEEeccCCCcEE
Q 001039 896 VVSGSDDQSVLVWDKQTSQ--LLEELKGHDAQVSCVRMLS---GERVLTASHDGTVKMWDVRTDT--CVATVGRCSSAVL 968 (1179)
Q Consensus 896 l~sgs~dg~I~iwd~~t~~--~~~~~~~h~~~V~~l~~s~---~~~l~sgs~dg~I~iwd~~~~~--~~~~~~~~~~~v~ 968 (1179)
|++|+.||+|++||+.+++ .+..+.+|...|.+++|++ +.++++|+.||+|++||++++. ....+.+|...|.
T Consensus 70 l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~ 149 (297)
T 2pm7_B 70 LASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVN 149 (297)
T ss_dssp EEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEE
T ss_pred EEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccc
Confidence 9999999999999999874 5667888999999999984 6899999999999999998763 2356678999999
Q ss_pred EEEEcCC-------------CCEEEEEeCCCeEEEEeCCCCc----eeEEeecCCCCeEEEEEcC-----CEEEEEeCCC
Q 001039 969 CMEYDDS-------------TGILAAGGRDAVANIWDIRAGR----QMHKFLGHTKWIRSIRMDR-----DTVITGSDDW 1026 (1179)
Q Consensus 969 ~l~~sp~-------------~~~l~sgs~dg~I~iwD~~~~~----~~~~~~~~~~~I~sl~~~~-----~~l~sgs~dg 1026 (1179)
+++|+|+ +++|++|+.|+.|++||+++++ ....+.+|...|.+++|++ .++++|+.|+
T Consensus 150 ~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~ 229 (297)
T 2pm7_B 150 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDR 229 (297)
T ss_dssp EEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS
T ss_pred eEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCC
Confidence 9999997 5799999999999999998876 5667889999999999976 4799999999
Q ss_pred cEEEEEccCCe---eeEEe--ecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEE
Q 001039 1027 TARMWSISRGT---CDAVL--ACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCV 1084 (1179)
Q Consensus 1027 ~I~iwd~~~~~---~~~~~--~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~ 1084 (1179)
+|++||++++. ....+ ..|...|.+++|+|+|++|++++.||.|++|+....+...++
T Consensus 230 ~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~g~w~~~ 292 (297)
T 2pm7_B 230 TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPA 292 (297)
T ss_dssp CEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEC
T ss_pred cEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCCCcEEec
Confidence 99999998743 22233 467889999999999999999999999999998754434433
No 82
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-32 Score=323.38 Aligned_cols=308 Identities=8% Similarity=0.075 Sum_probs=250.2
Q ss_pred cceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceecccc
Q 001039 769 RSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVG 846 (1179)
Q Consensus 769 ~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~ 846 (1179)
..+.+++|||||+++||++.| |+ |...++ .+.||.+.|++++|+
T Consensus 16 ~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~----------------------~l~gh~~~v~~V~Fs---------- 61 (588)
T 2j04_A 16 DWKNNLTWARDGTLYLTTFPDISIG--QPKYAK----------------------DINCNSKNLFHVKEF---------- 61 (588)
T ss_dssp SSSCCEEECTTSCEEEECSSSEEEE--EECCCS----------------------CCSSBGGGTEEEEEE----------
T ss_pred ccEEEEEECCCCCEEEEEcCCceee--cccccc----------------------eecCCCccEEEEEEC----------
Confidence 456778999999999999999 77 633322 237899999999998
Q ss_pred ccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEE--EecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCC
Q 001039 847 DREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDA 924 (1179)
Q Consensus 847 ~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~ 924 (1179)
|+| .++++.+|+.+ ......+ .|...|.+ +||+|.+||+++.||+|++||.++ ++..+. |..
T Consensus 62 --Pdg-------~~~~~~~~~~~---~~~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~ 125 (588)
T 2j04_A 62 --PLE-------FENKLDFELAQ---QNGLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKG 125 (588)
T ss_dssp --CCC-------CCCTTTTSCCC---SSCSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSS
T ss_pred --CCC-------CcceEEEEeCC---CceEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCC
Confidence 777 57776676643 2221222 45677774 699999999999999999999654 666677 665
Q ss_pred -----cEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCe-------EEEEe----ccCCCcEEEEEEcCCCCEEEEEeCCCe
Q 001039 925 -----QVSCVRML-SGERVLTASHDGTVKMWDVRTDT-------CVATV----GRCSSAVLCMEYDDSTGILAAGGRDAV 987 (1179)
Q Consensus 925 -----~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~-------~~~~~----~~~~~~v~~l~~sp~~~~l~sgs~dg~ 987 (1179)
.+.+++|+ +|++|++|+.||+|++||+.++. .+.++ .+|.+.|.+++|+|+| +++++.|+.
T Consensus 126 ~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~t 203 (588)
T 2j04_A 126 NLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNS 203 (588)
T ss_dssp CSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCC
T ss_pred ccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCe
Confidence 49999999 79999999999999999999885 35665 5677899999999999 888899999
Q ss_pred EEEEeCCCCce---eEEe-ecCCCCeEEEEEcCCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEE--ecCCCEE
Q 001039 988 ANIWDIRAGRQ---MHKF-LGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEY--SSSDRGI 1061 (1179)
Q Consensus 988 I~iwD~~~~~~---~~~~-~~~~~~I~sl~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~--spdg~~l 1061 (1179)
|++||+.+++. ..++ .+|...|.+++|+++.+++++ +|+|++||+.+++......+|.+.|+.++| +|++..+
T Consensus 204 VrlWd~~~~~~~~~~~tL~~~h~~~V~svaFsg~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~L 282 (588)
T 2j04_A 204 VFSMTVSASSHQPVSRMIQNASRRKITDLKIVDYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTIL 282 (588)
T ss_dssp EEEECCCSSSSCCCEEEEECCCSSCCCCEEEETTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEE
T ss_pred EEEEECCCCccccceeeecccccCcEEEEEEECCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEE
Confidence 99999988774 3556 478899999999878888887 699999999988875555489999999999 9999999
Q ss_pred EEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEEecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeee
Q 001039 1062 ITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRT 1141 (1179)
Q Consensus 1062 ~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~ 1141 (1179)
++++.||+ ++|..+. .+++||+..+++. |+++++|+...+. ...
T Consensus 283 a~a~edG~-klw~~d~-----------------~~~spd~~l~a~~--d~~v~lW~~~g~~----------------l~~ 326 (588)
T 2j04_A 283 LMSNKTSY-KVLLEDE-----------------LHVTADNIIAPYL--EKKFKKWSTIWNE----------------FNN 326 (588)
T ss_dssp EECSSCEE-EEEESSS-----------------EEEECCCSSHHHH--HHHHHHTTTTTTS----------------SSS
T ss_pred EEEcCCCC-EEEeecc-----------------EEECCCceEEEEc--CCEEEEEECCCCc----------------eee
Confidence 99999999 9999771 3478999888875 9999999985331 112
Q ss_pred cCCCcccEEEEEEcCCCCEEEEEeC
Q 001039 1142 PQKTVAVVRCIASDLERKRICSGGR 1166 (1179)
Q Consensus 1142 ~~~h~~~V~~v~fspdg~~Lasgs~ 1166 (1179)
..+ ...|.+++|||||+.+|+++.
T Consensus 327 ~~~-~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 327 YET-TLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp SCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred ecc-ceEEEEEEECCCCCEEEEEEe
Confidence 333 667999999999999999863
No 83
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=8.3e-32 Score=322.08 Aligned_cols=301 Identities=13% Similarity=0.148 Sum_probs=234.2
Q ss_pred ceEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEE--ec-CCCE
Q 001039 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NS-DRGK 895 (1179)
Q Consensus 819 ~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~--s~-d~~~ 895 (1179)
......+|...|+||+|+| .++++||+|+.||+|+|||+..........+.+|.+.|.++ +| ++++
T Consensus 111 ~~~~~~~~~~~V~~l~~~P-----------~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~ 179 (435)
T 4e54_B 111 ILQKAAPFDRRATSLAWHP-----------THPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQ 179 (435)
T ss_dssp SCCEEEECSSCEEEEEECS-----------SCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTE
T ss_pred ecccCCCCCCCEEEEEEeC-----------CCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCE
Confidence 3456788999999999994 36789999999999999998755555566778999999865 65 6889
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEeec--CCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEE
Q 001039 896 VVSGSDDQSVLVWDKQTSQLLEELKG--HDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEY 972 (1179)
Q Consensus 896 l~sgs~dg~I~iwd~~t~~~~~~~~~--h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~ 972 (1179)
|++|+.||+|++||++++........ +...+.+++|+ ++.++++|+.||.|++||++ ++.+..+..|...|.+++|
T Consensus 180 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~ 258 (435)
T 4e54_B 180 FYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVAL 258 (435)
T ss_dssp EEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEE
T ss_pred EEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeee
Confidence 99999999999999987655443333 34457889998 78899999999999999986 4566778889999999999
Q ss_pred cCCCC-EEEEEeCCCeEEEEeCCCCceeEE---eecCCCCeEEEEEcC--CEEEEEeCCCcEEEEEccCCeeeEEeecCC
Q 001039 973 DDSTG-ILAAGGRDAVANIWDIRAGRQMHK---FLGHTKWIRSIRMDR--DTVITGSDDWTARMWSISRGTCDAVLACHA 1046 (1179)
Q Consensus 973 sp~~~-~l~sgs~dg~I~iwD~~~~~~~~~---~~~~~~~I~sl~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~ 1046 (1179)
+|++. ++++|+.|+.|++||+++++.... ..+|...|++++|++ .+|++|+.||+|++||+.++.....+..|.
T Consensus 259 ~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~ 338 (435)
T 4e54_B 259 NPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHP 338 (435)
T ss_dssp CTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCC
T ss_pred cCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccc
Confidence 99876 678899999999999998765443 357899999999964 599999999999999999998888777664
Q ss_pred cC------EEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEEecCCCEEE-EEECCCcEEEEeCC
Q 001039 1047 GP------VQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLG-IGAADNSMSLFHRP 1119 (1179)
Q Consensus 1047 ~~------V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~la-sgs~Dg~I~iwd~~ 1119 (1179)
.. +....|+|++..+++++. +++..++ ++..++.|++||..
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~d~~~~~~~~~~~~~i~iwd~~ 386 (435)
T 4e54_B 339 HRHFQHLTPIKAAWHPRYNLIVVGRY--------------------------------PDPNFKSCTPYELRTIDVFDGN 386 (435)
T ss_dssp CCCCSSSCCCBCEECSSSSCEEEECC--------------------------------CCTTSCCSSTTCCCCEEEECSS
T ss_pred ccccccceeEEEEEcCCCCEEEEEEc--------------------------------CCCCeEEEEecCCCEEEEEECC
Confidence 32 334566666666665532 2222222 23345689999987
Q ss_pred CCCcCcccCCCCccccceeeee-cCCCcccEEEE-EEcCCCCEEEEEeCCCcEEEEECCCCC
Q 001039 1120 QERLGGFSGTGSKMSGWQLYRT-PQKTVAVVRCI-ASDLERKRICSGGRNGLLRLWEATINI 1179 (1179)
Q Consensus 1120 ~~~~~~~~~~g~~~~~~~~~~~-~~~h~~~V~~v-~fspdg~~Lasgs~Dg~I~vWdv~tg~ 1179 (1179)
+ | +.+.. ..+|...|.++ +|+|||++||+|+ |++|+||++++|+
T Consensus 387 ~---------g------~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk 432 (435)
T 4e54_B 387 S---------G------KMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEAR 432 (435)
T ss_dssp S---------C------CEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC---
T ss_pred C---------C------cEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCe
Confidence 3 3 23333 45788888887 6999999999876 8899999999875
No 84
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-32 Score=332.48 Aligned_cols=318 Identities=13% Similarity=0.051 Sum_probs=226.9
Q ss_pred EccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceeccccccCCCCE
Q 001039 776 FSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGF 853 (1179)
Q Consensus 776 fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~ 853 (1179)
.+|+++.+|+++.| |++|++++++.. ......+.+|.+.|++++|+|.. ..++++++
T Consensus 169 ~~~~~~~laS~s~D~tI~iWd~~~~~~~---------------~~~~~~l~~~~~~V~~v~wsp~~------~~~~~~~~ 227 (524)
T 2j04_B 169 LNEHLEMFDKEKHSSCIQIFKMNTSTLH---------------CVKVQTIVHSFGEVWDLKWHEGC------HAPHLVGC 227 (524)
T ss_dssp -------------CEEEEEEEEETTTCC---------------EEEEEEEEECCCSEEEEEECSSC------CCSSSSCE
T ss_pred cchhhhhhccCCCCceEEEEEccCCCCC---------------ceEEEEEEecCCcEEEEEECCCC------CCCCCCce
Confidence 57888889999888 999999875510 00234578899999999999531 11245789
Q ss_pred EEEEeCCCcEEEEcCCCCCc---------eeEEEeccccccEEEEec-CCCEEEEEeCCCcEEEEECCCC-eEEEEeecC
Q 001039 854 FISGSTDCLVKIWDPSLRGS---------ELRATLKGHTRTVRAINS-DRGKVVSGSDDQSVLVWDKQTS-QLLEELKGH 922 (1179)
Q Consensus 854 Lasgs~Dg~I~lWd~~~~~~---------~~~~~l~~h~~~v~~~s~-d~~~l~sgs~dg~I~iwd~~t~-~~~~~~~~h 922 (1179)
||+|+.||+|++||+..... .....+.+|...|.++.. .+..|++|+.||+|++||+.++ .....+.+|
T Consensus 228 LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H 307 (524)
T 2j04_B 228 LSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVH 307 (524)
T ss_dssp EEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECS
T ss_pred EEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecc
Confidence 99999999999999863321 123467889999997642 2458999999999999999976 345668899
Q ss_pred CCcEEEE--EEeC-C-CEEEEEEcCCeEEEEeCCCCeEEEEeccCC--CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 001039 923 DAQVSCV--RMLS-G-ERVLTASHDGTVKMWDVRTDTCVATVGRCS--SAVLCMEYDDSTGILAAGGRDAVANIWDIRAG 996 (1179)
Q Consensus 923 ~~~V~~l--~~s~-~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~--~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~ 996 (1179)
...|.++ +|++ + .++++|+.||+|++||++++++...+.+|. ..|.+++|+|+++.+++++.|++|++||++++
T Consensus 308 ~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~ 387 (524)
T 2j04_B 308 DSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAA 387 (524)
T ss_dssp SSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCT
T ss_pred cccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccc
Confidence 9999999 4564 5 789999999999999999888766665554 35789999999999999999999999999999
Q ss_pred ceeEEeecCCCCeEEEEEcC--CEEEEEeCCCcEEEEEccCCeeeEEeec-----CCcCEEEEEEecCCCEEEEEeCCCc
Q 001039 997 RQMHKFLGHTKWIRSIRMDR--DTVITGSDDWTARMWSISRGTCDAVLAC-----HAGPVQCVEYSSSDRGIITGSSDGL 1069 (1179)
Q Consensus 997 ~~~~~~~~~~~~I~sl~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~-----h~~~V~~l~~spdg~~l~sgs~Dg~ 1069 (1179)
.++..+.+|.+.|++++|++ ..+++|+.||+|++||+..+ ....... +...+++++|+|+|+.+. ...+
T Consensus 388 ~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~~-- 463 (524)
T 2j04_B 388 FAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDSS-- 463 (524)
T ss_dssp TCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEE-ECCC--
T ss_pred ccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEE-ccCC--
Confidence 99889999999999999965 48999999999999998654 2211111 122578999999998552 2222
Q ss_pred EEEEEcCCCCcceEEEeecccCceEEEE--ecCC---CEEEEEECCCcEEEEeCCC
Q 001039 1070 LRFWENDDAGGIKCVKNVTIHSSAILSI--NAGD---HWLGIGAADNSMSLFHRPQ 1120 (1179)
Q Consensus 1070 I~iwd~~~~~~~~~~~~~~~h~~~i~si--s~dg---~~lasgs~Dg~I~iwd~~~ 1120 (1179)
+.+|+.... ..++..+.+|...|.++ +|++ .++|+|+.||.|+||++..
T Consensus 464 ~~~~~~~~~--g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 464 YEVYPLTVN--DVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp CCCCC---------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred ceecccccC--CcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 334433211 24566777888888555 7774 4999999999999999863
No 85
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2.8e-30 Score=307.27 Aligned_cols=271 Identities=18% Similarity=0.329 Sum_probs=235.2
Q ss_pred EEEEccCCCceeeccCc-eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEE--ecccCceEEEEeecccceeccccccC
Q 001039 773 QSMFSREASSRSHSFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRII--RGHAGAITALHCVTKREVWDLVGDRE 849 (1179)
Q Consensus 773 ~~~fSpdg~~las~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~gH~~~V~~v~~s~~~~~~~~~~~s~ 849 (1179)
.++||++ +.||+|.+. |++||+.+++ ..+.+ .+|.+.|++|+|+ |
T Consensus 110 ~l~wS~~-n~lAvgld~tV~lWd~~tg~-------------------~~~~~~~~~~~~~V~sv~fs------------p 157 (420)
T 4gga_A 110 LVDWSSG-NVLAVALDNSVYLWSASSGD-------------------ILQLLQMEQPGEYISSVAWI------------K 157 (420)
T ss_dssp CEEECTT-SEEEEEETTEEEEEETTTCC-------------------EEEEEECCSTTCCEEEEEEC------------T
T ss_pred eEEECCC-CEEEEEeCCEEEEEECCCCC-------------------EEEEEEecCCCCcEEEEEEC------------C
Confidence 4699986 488888766 9999999887 45544 5788899999998 8
Q ss_pred CCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEEEeCCCcEEEEECCCC-eEEEEeecCCCcEEE
Q 001039 850 DAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTS-QLLEELKGHDAQVSC 928 (1179)
Q Consensus 850 d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~sgs~dg~I~iwd~~t~-~~~~~~~~h~~~V~~ 928 (1179)
||++||+|+.||+|++||+. ....+..+.+|...+.+++.++..+++|+.|+.+++||.... ..+..+.+|...+..
T Consensus 158 dg~~lasgs~Dg~v~iWd~~--~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~ 235 (420)
T 4gga_A 158 EGNYLAVGTSSAEVQLWDVQ--QQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCG 235 (420)
T ss_dssp TSSEEEEEETTSCEEEEETT--TTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEE
T ss_pred CCCEEEEEECCCeEEEEEcC--CCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceee
Confidence 99999999999999999976 566778899999999999999999999999999999998764 566788999999999
Q ss_pred EEEe-CCCEEEEEEcCCeEEEEeCCCCe----EEEEeccCCCcEEEEEEcCCCC-EEEEE--eCCCeEEEEeCCCCceeE
Q 001039 929 VRML-SGERVLTASHDGTVKMWDVRTDT----CVATVGRCSSAVLCMEYDDSTG-ILAAG--GRDAVANIWDIRAGRQMH 1000 (1179)
Q Consensus 929 l~~s-~~~~l~sgs~dg~I~iwd~~~~~----~~~~~~~~~~~v~~l~~sp~~~-~l~sg--s~dg~I~iwD~~~~~~~~ 1000 (1179)
+.++ ++..+++++.||.+++||..+++ .+.....|...|.+++|+|.+. .++++ +.|+.|++||+++++...
T Consensus 236 ~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~ 315 (420)
T 4gga_A 236 LRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS 315 (420)
T ss_dssp EEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEE
T ss_pred eeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccce
Confidence 9999 78899999999999999998775 3456678899999999999654 55543 479999999999999988
Q ss_pred EeecCCCCeEEEEEc--CCEEEEEe--CCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 001039 1001 KFLGHTKWIRSIRMD--RDTVITGS--DDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWEND 1076 (1179)
Q Consensus 1001 ~~~~~~~~I~sl~~~--~~~l~sgs--~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~ 1076 (1179)
.+..+ ..+.++.+. ++.+++++ .||.|++||+.+++++.++.+|.+.|++++|+|||++|++|+.||+|++||+.
T Consensus 316 ~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~ 394 (420)
T 4gga_A 316 AVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF 394 (420)
T ss_dssp EEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred eeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 88655 467777774 44666554 79999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 001039 1077 DA 1078 (1179)
Q Consensus 1077 ~~ 1078 (1179)
..
T Consensus 395 ~~ 396 (420)
T 4gga_A 395 EL 396 (420)
T ss_dssp CS
T ss_pred CC
Confidence 73
No 86
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.98 E-value=2.9e-30 Score=305.12 Aligned_cols=266 Identities=19% Similarity=0.343 Sum_probs=232.0
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCceeEEEecc-ccccEEE--EecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEE
Q 001039 851 AGFFISGSTDCLVKIWDPSLRGSELRATLKG-HTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVS 927 (1179)
Q Consensus 851 ~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~-h~~~v~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~ 927 (1179)
++.+++++.||.|++||+. +......+.. |...|.+ +++++++|++|+.||.|++||+.+++.+..+.+|...|.
T Consensus 103 ~~~l~~~~~d~~v~lw~~~--~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 180 (401)
T 4aez_A 103 NLNVVAVALERNVYVWNAD--SGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVG 180 (401)
T ss_dssp TTSEEEEEETTEEEEEETT--TCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred CCCEEEEECCCeEEEeeCC--CCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceE
Confidence 4558888899999999987 3333344443 7888885 589999999999999999999999999999999999999
Q ss_pred EEEEeCCCEEEEEEcCCeEEEEeCC-CCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCC
Q 001039 928 CVRMLSGERVLTASHDGTVKMWDVR-TDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHT 1006 (1179)
Q Consensus 928 ~l~~s~~~~l~sgs~dg~I~iwd~~-~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~ 1006 (1179)
+++| +++.+++|+.||.|++||++ .+.....+..|...|.+++|+|+++++++|+.||.|++||+++++.+..+.+|.
T Consensus 181 ~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 259 (401)
T 4aez_A 181 CLSW-NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHN 259 (401)
T ss_dssp EEEE-ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCS
T ss_pred EEEE-CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCc
Confidence 9999 56799999999999999999 566778888999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEcC---CEEEEEe--CCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEE--eCCCcEEEEEcCCCC
Q 001039 1007 KWIRSIRMDR---DTVITGS--DDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITG--SSDGLLRFWENDDAG 1079 (1179)
Q Consensus 1007 ~~I~sl~~~~---~~l~sgs--~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sg--s~Dg~I~iwd~~~~~ 1079 (1179)
..|.+++|++ ..+++|+ .||.|++||+.+++....+. +...|++++|+|++++++++ +.||.|++||+.++.
T Consensus 260 ~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~ 338 (401)
T 4aez_A 260 AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG 338 (401)
T ss_dssp SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTE
T ss_pred ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcc
Confidence 9999999975 3677765 79999999999999988886 67889999999999999994 489999999998733
Q ss_pred cceEEEeecccCceEEE--EecCCCEEEEEECCCcEEEEeCCCC
Q 001039 1080 GIKCVKNVTIHSSAILS--INAGDHWLGIGAADNSMSLFHRPQE 1121 (1179)
Q Consensus 1080 ~~~~~~~~~~h~~~i~s--is~dg~~lasgs~Dg~I~iwd~~~~ 1121 (1179)
......+.+|...|.+ ++|++++|++|+.||.|++||+.+.
T Consensus 339 -~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 339 -LTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDG 381 (401)
T ss_dssp -EEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-
T ss_pred -ceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 3444456788888755 4799999999999999999999843
No 87
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.98 E-value=8.1e-30 Score=289.55 Aligned_cols=271 Identities=17% Similarity=0.308 Sum_probs=233.0
Q ss_pred EEEEEccCCCceeeccCc-eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEE--ecccCceEEEEeecccceecccccc
Q 001039 772 VQSMFSREASSRSHSFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRII--RGHAGAITALHCVTKREVWDLVGDR 848 (1179)
Q Consensus 772 ~~~~fSpdg~~las~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~gH~~~V~~v~~s~~~~~~~~~~~s 848 (1179)
..++||+++ +||+|.+. |++||+.+++ .++.+ .+|...|++++|+
T Consensus 29 ~~l~WS~~~-~lAvg~D~tV~iWd~~tg~-------------------~~~~~~~~~~~~~V~~v~~~------------ 76 (318)
T 4ggc_A 29 NLVDWSSGN-VLAVALDNSVYLWSASSGD-------------------ILQLLQMEQPGEYISSVAWI------------ 76 (318)
T ss_dssp BCEEECTTS-EEEEEETTEEEEEETTTCC-------------------EEEEEECCSTTCCEEEEEEC------------
T ss_pred eEEEECCCC-EEEEEeCCEEEEEECCCCC-------------------EEEEEEecCCCCeEEEEEEC------------
Confidence 346999987 78887655 9999999887 55655 4688899999998
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEEEeCCCcEEEEECCCC-eEEEEeecCCCcEE
Q 001039 849 EDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTS-QLLEELKGHDAQVS 927 (1179)
Q Consensus 849 ~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~sgs~dg~I~iwd~~t~-~~~~~~~~h~~~V~ 927 (1179)
+++++|++|+.||+|++||+. ..+....+.+|...+.+++.++..+++|+.++.+++|+..++ ..+..+.+|...+.
T Consensus 77 ~~~~~l~sgs~Dg~v~iw~~~--~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (318)
T 4ggc_A 77 KEGNYLAVGTSSAEVQLWDVQ--QQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVC 154 (318)
T ss_dssp TTSSEEEEEETTSEEEEEETT--TTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEE
T ss_pred CCCCEEEEEECCCcEEEeecC--CceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceE
Confidence 899999999999999999976 567778899999999999999999999999999999998875 56678889999999
Q ss_pred EEEEe-CCCEEEEEEcCCeEEEEeCCCCeE----EEEeccCCCcEEEEEEcCCCCEE---EEEeCCCeEEEEeCCCCcee
Q 001039 928 CVRML-SGERVLTASHDGTVKMWDVRTDTC----VATVGRCSSAVLCMEYDDSTGIL---AAGGRDAVANIWDIRAGRQM 999 (1179)
Q Consensus 928 ~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~----~~~~~~~~~~v~~l~~sp~~~~l---~sgs~dg~I~iwD~~~~~~~ 999 (1179)
.+.+. ++..+++++.||+|++||+++++. ......+.+.|.++++++++..+ ++++.++.|++||.+.....
T Consensus 155 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~ 234 (318)
T 4ggc_A 155 GLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 234 (318)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE
T ss_pred EEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc
Confidence 99998 788999999999999999988653 34556678899999999976543 35667899999999988776
Q ss_pred EEeecCCCCeEEEEEcC--CEEEEE--eCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEc
Q 001039 1000 HKFLGHTKWIRSIRMDR--DTVITG--SDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWEN 1075 (1179)
Q Consensus 1000 ~~~~~~~~~I~sl~~~~--~~l~sg--s~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~ 1075 (1179)
... .+...+..+.+.+ +.++++ +.||.|++||+++++++.++.+|.+.|++++|+|+|++|++|+.||+|++||+
T Consensus 235 ~~~-~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~ 313 (318)
T 4ggc_A 235 SAV-DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC 313 (318)
T ss_dssp EEE-ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred ccc-cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 654 5666788888854 455544 47999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 001039 1076 DD 1077 (1179)
Q Consensus 1076 ~~ 1077 (1179)
.+
T Consensus 314 ~~ 315 (318)
T 4ggc_A 314 FE 315 (318)
T ss_dssp SC
T ss_pred CC
Confidence 76
No 88
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.98 E-value=7.8e-31 Score=305.97 Aligned_cols=293 Identities=11% Similarity=0.119 Sum_probs=224.2
Q ss_pred cCceEEEEeecccceeccccccCCCCEEEEEeCCC-------cEEEEcCCCCCce--------eEEEeccccccEEEEec
Q 001039 827 AGAITALHCVTKREVWDLVGDREDAGFFISGSTDC-------LVKIWDPSLRGSE--------LRATLKGHTRTVRAINS 891 (1179)
Q Consensus 827 ~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg-------~I~lWd~~~~~~~--------~~~~l~~h~~~v~~~s~ 891 (1179)
.-||++++|+ ||+++||+||.|. .|++|++...... ....+.+|...+.++++
T Consensus 14 g~PV~sv~fs------------~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~ 81 (365)
T 4h5i_A 14 GYPAYGAKFL------------NNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDA 81 (365)
T ss_dssp SSCEEEEEEE------------ETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEE
T ss_pred CCCEEEEEEe------------CCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEe
Confidence 3589999998 8999999998643 5999997643321 12356788889999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeE----EEE-----ecc
Q 001039 892 DRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTC----VAT-----VGR 962 (1179)
Q Consensus 892 d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~----~~~-----~~~ 962 (1179)
+++.+++|+.++..++|+. +.|+.+++|++.+... ... ...
T Consensus 82 ~~~~~~~g~~~~~~~l~s~------------------------------~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 131 (365)
T 4h5i_A 82 SKGIILVGCNENSTKITQG------------------------------KGNKHLRKFKYDKVNDQLEFLTSVDFDASTN 131 (365)
T ss_dssp ETTEEEEECCCCHHHHHHT------------------------------SCCCCEEEEEEETTTTEEEEEEEECSSCCCC
T ss_pred CCCEEEEEECCCccEEEEe------------------------------cCCCcEEEEEecCCCceEEEeeeeceeecCC
Confidence 9999998877655544433 2334444444433211 111 123
Q ss_pred CCCcEEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCceeEEeecCCCCeEEEEEcCC--EEEEEeCCCcEEEEEccCCee
Q 001039 963 CSSAVLCMEYDDSTGILAAGG--RDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRGTC 1038 (1179)
Q Consensus 963 ~~~~v~~l~~sp~~~~l~sgs--~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~--~l~sgs~dg~I~iwd~~~~~~ 1038 (1179)
+...+.+++|+|||+++++++ .|+.|++||+++++.+..+. |...|.+++|+++ ++++++ ++.+++|+..+++.
T Consensus 132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~ 209 (365)
T 4h5i_A 132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSC 209 (365)
T ss_dssp TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTCCE
T ss_pred cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecc-ceeEEEEEeccCcc
Confidence 345688999999999987655 68999999999999988874 7788999999654 788877 55677777777766
Q ss_pred eEE--eecCCcCEEEEEEecCCCEEEEEeCCC----cEEEEEcCCCCc-ceEEEeecccCceEEEE--ecCCCEEEEEEC
Q 001039 1039 DAV--LACHAGPVQCVEYSSSDRGIITGSSDG----LLRFWENDDAGG-IKCVKNVTIHSSAILSI--NAGDHWLGIGAA 1109 (1179)
Q Consensus 1039 ~~~--~~~h~~~V~~l~~spdg~~l~sgs~Dg----~I~iwd~~~~~~-~~~~~~~~~h~~~i~si--s~dg~~lasgs~ 1109 (1179)
... ...|...|.+++|+|+++++++++.|+ .+++|++..... ......+.+|...|.++ +|+|++||+|+.
T Consensus 210 ~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~ 289 (365)
T 4h5i_A 210 IARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASN 289 (365)
T ss_dssp EEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEET
T ss_pred eeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcC
Confidence 543 446888999999999999999999887 588898876321 22345667888888665 899999999999
Q ss_pred CCcEEEEeCCCCCcCcccCCCCccccceeeee-cCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001039 1110 DNSMSLFHRPQERLGGFSGTGSKMSGWQLYRT-PQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATIN 1178 (1179)
Q Consensus 1110 Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~-~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~tg 1178 (1179)
|++|+|||+.+ + +++.. +.+|...|++|+|||||++|||||.|++|+||++.++
T Consensus 290 D~~V~iwd~~~---------~------~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 290 DNSIALVKLKD---------L------SMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp TSCEEEEETTT---------T------EEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CCEEEEEECCC---------C------cEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99999999973 3 55555 5799999999999999999999999999999999754
No 89
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.98 E-value=2e-31 Score=318.76 Aligned_cols=284 Identities=16% Similarity=0.188 Sum_probs=225.0
Q ss_pred cccCCcceEEEEEcc-CCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccc
Q 001039 764 ASGIGRSWVQSMFSR-EASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKRE 840 (1179)
Q Consensus 764 ~~gh~~~i~~~~fSp-dg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~ 840 (1179)
..+|.+.|.+++|+| ++++||+|+.| |++||+.++.. .....+.+|.+.|++|+|+|
T Consensus 115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~-----------------~~~~~~~gH~~~V~~l~f~p--- 174 (435)
T 4e54_B 115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDK-----------------PTFIKGIGAGGSITGLKFNP--- 174 (435)
T ss_dssp EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSC-----------------CEEECCCSSSCCCCEEEECS---
T ss_pred CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCc-----------------eeEEEccCCCCCEEEEEEeC---
Confidence 456778899999999 56799999988 99999987652 13445679999999999984
Q ss_pred eeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEecccc--ccEE--EEecCCCEEEEEeCCCcEEEEECCCCeEE
Q 001039 841 VWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHT--RTVR--AINSDRGKVVSGSDDQSVLVWDKQTSQLL 916 (1179)
Q Consensus 841 ~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~--~~v~--~~s~d~~~l~sgs~dg~I~iwd~~t~~~~ 916 (1179)
.++++|+||+.||+|++||++ +.........|. ..+. ++++++.+|++|+.||+|++||+. ++.+
T Consensus 175 --------~~~~~l~s~s~D~~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~ 243 (435)
T 4e54_B 175 --------LNTNQFYASSMEGTTRLQDFK--GNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKEL 243 (435)
T ss_dssp --------SCTTEEEEECSSSCEEEEETT--SCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBC
T ss_pred --------CCCCEEEEEeCCCEEEEeecc--CCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-ccee
Confidence 378999999999999999986 333322233333 3333 568999999999999999999986 5667
Q ss_pred EEeecCCCcEEEEEEeC-C-CEEEEEEcCCeEEEEeCCCCeEEEEe---ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 001039 917 EELKGHDAQVSCVRMLS-G-ERVLTASHDGTVKMWDVRTDTCVATV---GRCSSAVLCMEYDDSTGILAAGGRDAVANIW 991 (1179)
Q Consensus 917 ~~~~~h~~~V~~l~~s~-~-~~l~sgs~dg~I~iwd~~~~~~~~~~---~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iw 991 (1179)
..+.+|...|.+++|++ + ..+++|+.||+|++||+++++....+ .+|...|.+++|+|+|++|++|+.||.|++|
T Consensus 244 ~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iw 323 (435)
T 4e54_B 244 WNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVY 323 (435)
T ss_dssp CCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEE
T ss_pred EEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEE
Confidence 78899999999999993 3 47889999999999999887654333 4688999999999999999999999999999
Q ss_pred eCCCCceeEEeecCCCC------eEEEEEcC--CEEEEEe------------CCCcEEEEEccCCeeeEEee-cCCcCEE
Q 001039 992 DIRAGRQMHKFLGHTKW------IRSIRMDR--DTVITGS------------DDWTARMWSISRGTCDAVLA-CHAGPVQ 1050 (1179)
Q Consensus 992 D~~~~~~~~~~~~~~~~------I~sl~~~~--~~l~sgs------------~dg~I~iwd~~~~~~~~~~~-~h~~~V~ 1050 (1179)
|+++++....+..|... +....+++ +.+++++ .++.|++||..+++.+..+. +|...|.
T Consensus 324 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~ 403 (435)
T 4e54_B 324 SASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGIS 403 (435)
T ss_dssp ESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCC
T ss_pred ECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEE
Confidence 99999888777665431 22334432 3444443 34679999999999888764 6888898
Q ss_pred EE-EEecCCCEEEEEeCCCcEEEEEcCCCC
Q 001039 1051 CV-EYSSSDRGIITGSSDGLLRFWENDDAG 1079 (1179)
Q Consensus 1051 ~l-~~spdg~~l~sgs~Dg~I~iwd~~~~~ 1079 (1179)
++ +|+|+|++|++|+ |+.|+|||+++++
T Consensus 404 s~~~fspdg~~lasg~-d~~i~iW~~~~gk 432 (435)
T 4e54_B 404 SLNEFNPMGDTLASAM-GYHILIWSQQEAR 432 (435)
T ss_dssp CEEEECTTSSCEEEEC-SSEEEECCCC---
T ss_pred EEEEECCCCCEEEEEc-CCcEEEEECCcCe
Confidence 87 6999999999876 8899999998843
No 90
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1.3e-31 Score=313.12 Aligned_cols=279 Identities=13% Similarity=0.143 Sum_probs=223.4
Q ss_pred cCCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceec
Q 001039 766 GIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWD 843 (1179)
Q Consensus 766 gh~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~ 843 (1179)
.|...|.+++|+|||+++|+++.| |++||+.++.. ..++.+.+|.+.|++++|+
T Consensus 9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~-----------------~~~~~~~~h~~~v~~~~~s------- 64 (377)
T 3dwl_C 9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW-----------------KHARTFSDHDKIVTCVDWA------- 64 (377)
T ss_dssp ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE-----------------EECCCBCCCSSCEEEEEEC-------
T ss_pred cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce-----------------EEEEEEecCCceEEEEEEe-------
Confidence 355788899999999999999888 99999987620 1566788999999999998
Q ss_pred cccccCCCCEEEEEeCCCcEEEEcCCCCC-ceeEEEeccccccEEEE--ecCCCEEEEEeCCCcEEEEECCCCe---EEE
Q 001039 844 LVGDREDAGFFISGSTDCLVKIWDPSLRG-SELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQ---LLE 917 (1179)
Q Consensus 844 ~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~-~~~~~~l~~h~~~v~~~--s~d~~~l~sgs~dg~I~iwd~~t~~---~~~ 917 (1179)
|++++|++|+.||+|++||+.... ......+.+|...|.++ ++++++|++|+.||+|++||+.+++ ...
T Consensus 65 -----~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 139 (377)
T 3dwl_C 65 -----PKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSK 139 (377)
T ss_dssp -----TTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCE
T ss_pred -----CCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeee
Confidence 889999999999999999987433 23566788899999865 7899999999999999999999887 367
Q ss_pred Eeec-CCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCC------------------CCeEEEEeccCCCcEEEEEEcCCCC
Q 001039 918 ELKG-HDAQVSCVRML-SGERVLTASHDGTVKMWDVR------------------TDTCVATVGRCSSAVLCMEYDDSTG 977 (1179)
Q Consensus 918 ~~~~-h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~------------------~~~~~~~~~~~~~~v~~l~~sp~~~ 977 (1179)
.+.+ |...|.+++|+ ++.++++|+.||+|++||+. .++.+..+ .|...|.+++|+|+++
T Consensus 140 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~ 218 (377)
T 3dwl_C 140 HLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGN 218 (377)
T ss_dssp EECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSS
T ss_pred EeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCC
Confidence 7777 99999999999 67899999999999999985 35566666 8899999999999999
Q ss_pred EEEEEeCCCeEEEEeCCCCce----eEEeecCCCCeEEEEEcC--CEEEEEeCCCcEEEEEccCCe--------------
Q 001039 978 ILAAGGRDAVANIWDIRAGRQ----MHKFLGHTKWIRSIRMDR--DTVITGSDDWTARMWSISRGT-------------- 1037 (1179)
Q Consensus 978 ~l~sgs~dg~I~iwD~~~~~~----~~~~~~~~~~I~sl~~~~--~~l~sgs~dg~I~iwd~~~~~-------------- 1037 (1179)
++++++.||.|++||+++++. +..+.+|...|.+++|++ .++++|+.++.+ +|+...+.
T Consensus 219 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 297 (377)
T 3dwl_C 219 ALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKT 297 (377)
T ss_dssp CEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCC
T ss_pred EEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccccc
Confidence 999999999999999999987 788899999999999954 477777665555 67654211
Q ss_pred ------------e-e---------EEe----------------ecCCcCEEEEEEecCC-C---EEEEEeCCCcEEEEEc
Q 001039 1038 ------------C-D---------AVL----------------ACHAGPVQCVEYSSSD-R---GIITGSSDGLLRFWEN 1075 (1179)
Q Consensus 1038 ------------~-~---------~~~----------------~~h~~~V~~l~~spdg-~---~l~sgs~Dg~I~iwd~ 1075 (1179)
. . ..+ ..|.+.|+++++.+.+ . .++||+.||.|++||+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 298 SFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp CBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0 0 001 1289999999976543 3 6999999999999985
No 91
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.3e-30 Score=297.20 Aligned_cols=257 Identities=20% Similarity=0.309 Sum_probs=220.8
Q ss_pred ceEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEE--ecC--CC
Q 001039 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSD--RG 894 (1179)
Q Consensus 819 ~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~--s~d--~~ 894 (1179)
.+..+.+|.+.|++++|+ +++++|++|+.||.|++||+..........+.+|...|.++ +++ ++
T Consensus 3 ~~~~~~~h~~~v~~~~~s------------~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 70 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLD------------YYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGT 70 (379)
T ss_dssp --CCEEECCCCEEEEEEC------------SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCS
T ss_pred ccEEecCCcccEEEEEEc------------CCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCC
Confidence 566789999999999998 89999999999999999998644567778899999999876 455 89
Q ss_pred EEEEEeCCCcEEEEECCCCe--EEEEeecCCCcEEEEEEe-C--CCEEEEEEcCCeEEEEeCCCCe--EEEEeccCCCcE
Q 001039 895 KVVSGSDDQSVLVWDKQTSQ--LLEELKGHDAQVSCVRML-S--GERVLTASHDGTVKMWDVRTDT--CVATVGRCSSAV 967 (1179)
Q Consensus 895 ~l~sgs~dg~I~iwd~~t~~--~~~~~~~h~~~V~~l~~s-~--~~~l~sgs~dg~I~iwd~~~~~--~~~~~~~~~~~v 967 (1179)
+|++|+.||.|++||+.+++ .+..+..|...|.+++|+ + +..+++++.||.|++||++++. ....+..|...|
T Consensus 71 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v 150 (379)
T 3jrp_A 71 ILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGV 150 (379)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCE
T ss_pred EEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCce
Confidence 99999999999999999987 777888999999999999 4 7899999999999999999873 344566889999
Q ss_pred EEEEEcC-------------CCCEEEEEeCCCeEEEEeCCCCc----eeEEeecCCCCeEEEEEc-----CCEEEEEeCC
Q 001039 968 LCMEYDD-------------STGILAAGGRDAVANIWDIRAGR----QMHKFLGHTKWIRSIRMD-----RDTVITGSDD 1025 (1179)
Q Consensus 968 ~~l~~sp-------------~~~~l~sgs~dg~I~iwD~~~~~----~~~~~~~~~~~I~sl~~~-----~~~l~sgs~d 1025 (1179)
.+++|+| ++..+++|+.||.|++||++++. ....+.+|...|.+++|+ ++++++++.|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d 230 (379)
T 3jrp_A 151 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD 230 (379)
T ss_dssp EEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT
T ss_pred EEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCC
Confidence 9999999 69999999999999999998765 446678899999999996 4589999999
Q ss_pred CcEEEEEccCCe---eeEEe--ecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEee
Q 001039 1026 WTARMWSISRGT---CDAVL--ACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNV 1087 (1179)
Q Consensus 1026 g~I~iwd~~~~~---~~~~~--~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~ 1087 (1179)
|.|++||++++. ..... ..|...|++++|+|+|++|++++.||.|++||+........+...
T Consensus 231 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 297 (379)
T 3jrp_A 231 RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGEV 297 (379)
T ss_dssp SCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEEEEEEEE
T ss_pred CEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCccccccce
Confidence 999999999874 22222 348889999999999999999999999999999875544444433
No 92
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=3.7e-29 Score=297.57 Aligned_cols=272 Identities=20% Similarity=0.368 Sum_probs=233.2
Q ss_pred eEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEE--EecCCCEEEEEeCCCcEEE
Q 001039 830 ITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLV 907 (1179)
Q Consensus 830 V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~--~s~d~~~l~sgs~dg~I~i 907 (1179)
.+.|+|| + +++||+|. |++|+|||...........+.+|...|++ |+++|++|++|+.||+|++
T Consensus 108 ~~~l~wS------------~-~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~i 173 (420)
T 4gga_A 108 LNLVDWS------------S-GNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQL 173 (420)
T ss_dssp CBCEEEC------------T-TSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ceeEEEC------------C-CCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEE
Confidence 5667776 4 45787776 99999999874333333445678888885 5899999999999999999
Q ss_pred EECCCCeEEEEeecCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCC-eEEEEeccCCCcEEEEEEcCCCCEEEEEeCCC
Q 001039 908 WDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTD-TCVATVGRCSSAVLCMEYDDSTGILAAGGRDA 986 (1179)
Q Consensus 908 wd~~t~~~~~~~~~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg 986 (1179)
||+.+++.+..+.+|...+.++.++ +..+++|+.|+.+++||.... ..+..+.+|...+..+.++++++++++++.||
T Consensus 174 Wd~~~~~~~~~~~~h~~~v~~~s~~-~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~ 252 (420)
T 4gga_A 174 WDVQQQKRLRNMTSHSARVGSLSWN-SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDN 252 (420)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEE-TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEcCCCcEEEEEeCCCCceEEEeeC-CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccc
Confidence 9999999999999999999999875 678999999999999998874 45677889999999999999999999999999
Q ss_pred eEEEEeCCCCc----eeEEeecCCCCeEEEEEcC---CEEEE--EeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecC
Q 001039 987 VANIWDIRAGR----QMHKFLGHTKWIRSIRMDR---DTVIT--GSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSS 1057 (1179)
Q Consensus 987 ~I~iwD~~~~~----~~~~~~~~~~~I~sl~~~~---~~l~s--gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd 1057 (1179)
.+++||..+++ .+.....|...|.+++|.+ +.+++ |+.|++|++||+.++++...+.. ...+.++.|+++
T Consensus 253 ~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~-~~~v~~~~~~~~ 331 (420)
T 4gga_A 253 LVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA-HSQVCSILWSPH 331 (420)
T ss_dssp CEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEEC-SSCEEEEEEETT
T ss_pred cceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecc-ccceeeeeecCC
Confidence 99999998765 3566778999999999964 35555 45799999999999999988875 467899999999
Q ss_pred CCEEEEEe--CCCcEEEEEcCCCCcceEEEeecccCceEEEE--ecCCCEEEEEECCCcEEEEeCCC
Q 001039 1058 DRGIITGS--SDGLLRFWENDDAGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQ 1120 (1179)
Q Consensus 1058 g~~l~sgs--~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~si--s~dg~~lasgs~Dg~I~iwd~~~ 1120 (1179)
++.+++++ .||.|++||+.+ ..++..+.+|...|.++ +|+|++|++|+.||+|++||+.+
T Consensus 332 ~~~lv~~sg~~d~~I~iwd~~~---~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 332 YKELISGHGFAQNQLVIWKYPT---MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 395 (420)
T ss_dssp TTEEEEEECTTTCCEEEEETTT---CCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred CCeEEEEEecCCCEEEEEECCC---CcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 99998875 799999999988 56788889999999776 79999999999999999999864
No 93
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=3.3e-30 Score=295.28 Aligned_cols=303 Identities=15% Similarity=0.164 Sum_probs=230.7
Q ss_pred ccccCCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccc
Q 001039 763 EASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKRE 840 (1179)
Q Consensus 763 ~~~gh~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~ 840 (1179)
...||...|.+++|+|||+++|+|+.| |++||+.++... ......+.+|.+.|++++|+|.
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~---------------~~~~~~~~~~~~~v~~~~~~~~-- 68 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSN---------------WELSDSWRAHDSSIVAIDWASP-- 68 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCC---------------EEEEEEEECCSSCEEEEEECCG--
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCc---------------ceecceeccCCCcEEEEEEcCC--
Confidence 357899999999999999999999988 999999865421 1256788999999999999830
Q ss_pred eeccccccCCCCEEEEEeCCCcEEEEcCCCCCc-------eeEEEeccccccEEEE--ecC--CCEEEEEeCCCcEEEEE
Q 001039 841 VWDLVGDREDAGFFISGSTDCLVKIWDPSLRGS-------ELRATLKGHTRTVRAI--NSD--RGKVVSGSDDQSVLVWD 909 (1179)
Q Consensus 841 ~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~-------~~~~~l~~h~~~v~~~--s~d--~~~l~sgs~dg~I~iwd 909 (1179)
.|+++|++|+.||+|++||+..... .....+.+|...|.++ +++ +.++++++.||.|++||
T Consensus 69 --------~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd 140 (351)
T 3f3f_A 69 --------EYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYD 140 (351)
T ss_dssp --------GGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEE
T ss_pred --------CCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEec
Confidence 1699999999999999999874321 4567888999999865 777 99999999999999999
Q ss_pred CCCCeEEEEee-------------cCCCcEEEEEEeC----CCEEEEEEcCCeEEEEeCCCCeE--EEEeccCCCcEEEE
Q 001039 910 KQTSQLLEELK-------------GHDAQVSCVRMLS----GERVLTASHDGTVKMWDVRTDTC--VATVGRCSSAVLCM 970 (1179)
Q Consensus 910 ~~t~~~~~~~~-------------~h~~~V~~l~~s~----~~~l~sgs~dg~I~iwd~~~~~~--~~~~~~~~~~v~~l 970 (1179)
+.+++.+..+. .|...+.+++|++ +..+++++.|+.+.+|+...++. +..+.+|...|.++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~ 220 (351)
T 3f3f_A 141 ALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSI 220 (351)
T ss_dssp CSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEE
T ss_pred CCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEE
Confidence 98876443322 5788999999984 78999999999999998888765 67778899999999
Q ss_pred EEcCCC----CEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcC------CEEEEEeCCCcEEEEEccCCeeeE
Q 001039 971 EYDDST----GILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR------DTVITGSDDWTARMWSISRGTCDA 1040 (1179)
Q Consensus 971 ~~sp~~----~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~------~~l~sgs~dg~I~iwd~~~~~~~~ 1040 (1179)
+|+|++ +++++|+.||.|++||++++........+........... .....+...+.+.+|+..+.+.+.
T Consensus 221 ~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (351)
T 3f3f_A 221 SWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLS 300 (351)
T ss_dssp EECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEE
T ss_pred EECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEE
Confidence 999998 8999999999999999987755444333333222222211 122334455667778877888889
Q ss_pred EeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeeccc
Q 001039 1041 VLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIH 1090 (1179)
Q Consensus 1041 ~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h 1090 (1179)
.+.+|.+.|++++|+|++++|++|+.||.|++||+.+++...++..+..|
T Consensus 301 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~ 350 (351)
T 3f3f_A 301 EHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMSVITAQ 350 (351)
T ss_dssp EECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEEEEC--
T ss_pred EEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhheeehccc
Confidence 99999999999999999999999999999999999997777887776554
No 94
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=1e-30 Score=298.60 Aligned_cols=257 Identities=21% Similarity=0.331 Sum_probs=211.3
Q ss_pred EEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEE--ec--CCCEE
Q 001039 821 RIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NS--DRGKV 896 (1179)
Q Consensus 821 ~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~--s~--d~~~l 896 (1179)
..+.+|.+.|++++|+ ++|++||+|+.|++|++||+..........+.+|...|.++ ++ ++++|
T Consensus 7 ~~~~~H~~~V~~v~~s------------~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l 74 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMD------------YYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNIL 74 (316)
T ss_dssp -------CCEEEEEEC------------GGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCE
T ss_pred eecccccCeEEEeeEc------------CCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEE
Confidence 3567999999999998 79999999999999999998633334567899999999976 33 48999
Q ss_pred EEEeCCCcEEEEECCCC--eEEEEeecCCCcEEEEEEeC---CCEEEEEEcCCeEEEEeCCCCeE---EEEeccCCCcEE
Q 001039 897 VSGSDDQSVLVWDKQTS--QLLEELKGHDAQVSCVRMLS---GERVLTASHDGTVKMWDVRTDTC---VATVGRCSSAVL 968 (1179)
Q Consensus 897 ~sgs~dg~I~iwd~~t~--~~~~~~~~h~~~V~~l~~s~---~~~l~sgs~dg~I~iwd~~~~~~---~~~~~~~~~~v~ 968 (1179)
++|+.|++|++||+.++ +....+.+|...|.+++|++ +.++++|+.||+|++||++++.. ...+..|...+.
T Consensus 75 ~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~ 154 (316)
T 3bg1_A 75 ASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCN 154 (316)
T ss_dssp EEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBC
T ss_pred EEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcc
Confidence 99999999999999987 46678889999999999994 67899999999999999987632 344567888999
Q ss_pred EEEEcCC-----------------CCEEEEEeCCCeEEEEeCCCC---ceeEEeecCCCCeEEEEEcC------CEEEEE
Q 001039 969 CMEYDDS-----------------TGILAAGGRDAVANIWDIRAG---RQMHKFLGHTKWIRSIRMDR------DTVITG 1022 (1179)
Q Consensus 969 ~l~~sp~-----------------~~~l~sgs~dg~I~iwD~~~~---~~~~~~~~~~~~I~sl~~~~------~~l~sg 1022 (1179)
+++|+|+ ++++++|+.|+.|++||++++ +.+..+.+|...|.+++|++ ..+++|
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~ 234 (316)
T 3bg1_A 155 AVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASC 234 (316)
T ss_dssp CCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEE
T ss_pred eEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEE
Confidence 9999997 478999999999999999765 45677889999999999965 479999
Q ss_pred eCCCcEEEEEccCC---e-eeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecc
Q 001039 1023 SDDWTARMWSISRG---T-CDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTI 1089 (1179)
Q Consensus 1023 s~dg~I~iwd~~~~---~-~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~ 1089 (1179)
+.||+|++||+++. . ....+..|...|++++|+|++++|++|+.||.|++|+....+...++..+..
T Consensus 235 s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~g~~~~~~~~~~ 305 (316)
T 3bg1_A 235 SQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVNK 305 (316)
T ss_dssp ETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECTTSCEEEEEECC-
T ss_pred cCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECCCCcEEEeeeccC
Confidence 99999999998763 1 2334567899999999999999999999999999999875444555655543
No 95
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.97 E-value=2.5e-29 Score=284.26 Aligned_cols=243 Identities=16% Similarity=0.280 Sum_probs=208.7
Q ss_pred EEeccccccEEE--EecCCCEEEEEeCCCcEEEEECCC--CeEEEEeecCCCcEEEEEEe-C--CCEEEEEEcCCeEEEE
Q 001039 877 ATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQT--SQLLEELKGHDAQVSCVRML-S--GERVLTASHDGTVKMW 949 (1179)
Q Consensus 877 ~~l~~h~~~v~~--~s~d~~~l~sgs~dg~I~iwd~~t--~~~~~~~~~h~~~V~~l~~s-~--~~~l~sgs~dg~I~iw 949 (1179)
..+.+|...|.+ ++++|++|++|+.||+|++||+.+ ++.+.++.+|.+.|.+++|+ + ++++++|+.||+|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 457899999985 589999999999999999999974 46788999999999999997 3 7899999999999999
Q ss_pred eCCCCe--EEEEeccCCCcEEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCce--eEEeecCCCCeEEEEEcC-------
Q 001039 950 DVRTDT--CVATVGRCSSAVLCMEYDDS--TGILAAGGRDAVANIWDIRAGRQ--MHKFLGHTKWIRSIRMDR------- 1016 (1179)
Q Consensus 950 d~~~~~--~~~~~~~~~~~v~~l~~sp~--~~~l~sgs~dg~I~iwD~~~~~~--~~~~~~~~~~I~sl~~~~------- 1016 (1179)
|+++++ .+..+..|...|.+++|+|+ +.++++|+.||.|++||++++.. ...+.+|...|.+++|++
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 162 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence 999874 56677789999999999997 88999999999999999987642 456789999999999976
Q ss_pred --------CEEEEEeCCCcEEEEEccCCe----eeEEeecCCcCEEEEEEecCC---CEEEEEeCCCcEEEEEcCCCCcc
Q 001039 1017 --------DTVITGSDDWTARMWSISRGT----CDAVLACHAGPVQCVEYSSSD---RGIITGSSDGLLRFWENDDAGGI 1081 (1179)
Q Consensus 1017 --------~~l~sgs~dg~I~iwd~~~~~----~~~~~~~h~~~V~~l~~spdg---~~l~sgs~Dg~I~iwd~~~~~~~ 1081 (1179)
+.+++|+.|++|++||+++++ ....+.+|...|++++|+|++ ++|++|+.|++|++||+++....
T Consensus 163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~ 242 (297)
T 2pm7_B 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP 242 (297)
T ss_dssp -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc
Confidence 389999999999999998875 567788999999999999985 89999999999999999874322
Q ss_pred eEEEee--cccCceEEEE--ecCCCEEEEEECCCcEEEEeCC
Q 001039 1082 KCVKNV--TIHSSAILSI--NAGDHWLGIGAADNSMSLFHRP 1119 (1179)
Q Consensus 1082 ~~~~~~--~~h~~~i~si--s~dg~~lasgs~Dg~I~iwd~~ 1119 (1179)
.....+ ..|...+.++ +|+|++||+|+.||+|++|+..
T Consensus 243 ~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 243 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp CEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred cceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 122222 4566777554 7999999999999999999975
No 96
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=3.1e-29 Score=288.09 Aligned_cols=280 Identities=15% Similarity=0.231 Sum_probs=241.6
Q ss_pred eEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCC-ceeEEEeccccccEEE--EecCCC-E
Q 001039 820 IRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRG-SELRATLKGHTRTVRA--INSDRG-K 895 (1179)
Q Consensus 820 ~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~-~~~~~~l~~h~~~v~~--~s~d~~-~ 895 (1179)
+....+|.+.|++++|+ |++++|++|+.||.|++||+.... ........+|...|.+ ++++++ +
T Consensus 4 ~~~~~~h~~~v~~~~~s------------~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 71 (342)
T 1yfq_A 4 VQIEQAPKDYISDIKII------------PSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQ 71 (342)
T ss_dssp EECSSCCSSCEEEEEEE------------GGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEE
T ss_pred eecccCCCCcEEEEEEc------------CCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcE
Confidence 34456899999999998 789999999999999999986333 1223455689999885 478999 9
Q ss_pred EEEEeCCCcEEEEEC-CCCeEEEEeec--CCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCC---------CeEEEEeccC
Q 001039 896 VVSGSDDQSVLVWDK-QTSQLLEELKG--HDAQVSCVRMLSGERVLTASHDGTVKMWDVRT---------DTCVATVGRC 963 (1179)
Q Consensus 896 l~sgs~dg~I~iwd~-~t~~~~~~~~~--h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~---------~~~~~~~~~~ 963 (1179)
+++|+.||.|++||+ .+++. ..+.+ |...|.+++|++++.+++++.||.|++||+++ ++.+..+. +
T Consensus 72 l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~ 149 (342)
T 1yfq_A 72 IYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-V 149 (342)
T ss_dssp EEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-S
T ss_pred EEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-e
Confidence 999999999999999 87765 77788 99999999999888999999999999999987 66666665 8
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-Cce--eEEeecCCCCeEEEEEcC---CEEEEEeCCCcEEEEEccCC-
Q 001039 964 SSAVLCMEYDDSTGILAAGGRDAVANIWDIRA-GRQ--MHKFLGHTKWIRSIRMDR---DTVITGSDDWTARMWSISRG- 1036 (1179)
Q Consensus 964 ~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~-~~~--~~~~~~~~~~I~sl~~~~---~~l~sgs~dg~I~iwd~~~~- 1036 (1179)
...+.+++|++++ +++++.||.|++||+++ +.. ......|...+.+++|++ +.+++++.||.|++||++..
T Consensus 150 ~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~ 227 (342)
T 1yfq_A 150 KNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQG 227 (342)
T ss_dssp CCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTC
T ss_pred CCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCC
Confidence 8899999999988 99999999999999998 553 334557888999999976 59999999999999999887
Q ss_pred -----eeeEEeecCCc---------CEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeeccc-CceEEEEecCC
Q 001039 1037 -----TCDAVLACHAG---------PVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIH-SSAILSINAGD 1101 (1179)
Q Consensus 1037 -----~~~~~~~~h~~---------~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h-~~~i~sis~dg 1101 (1179)
+....+..|.. .|++++|+|++++|++|+.||.|++||+.+ .+.+..+.+| ...|.++.+++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~---~~~~~~~~~~h~~~v~~~~~~~ 304 (342)
T 1yfq_A 228 DDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT---RKKIKNFAKFNEDSVVKIACSD 304 (342)
T ss_dssp CSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTT---TEEEEECCCCSSSEEEEEEECS
T ss_pred cccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCcc---HhHhhhhhcccCCCceEecCCC
Confidence 77888888865 999999999999999999999999999998 5677788888 99998888999
Q ss_pred CEEEEEECCCc-EEEEeC
Q 001039 1102 HWLGIGAADNS-MSLFHR 1118 (1179)
Q Consensus 1102 ~~lasgs~Dg~-I~iwd~ 1118 (1179)
++|++|+.||+ .+.|..
T Consensus 305 ~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 305 NILCLATSDDTFKTNAAI 322 (342)
T ss_dssp SEEEEEEECTHHHHCSSS
T ss_pred CeEEEEecCCcccccccc
Confidence 99999999998 555553
No 97
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=2.1e-29 Score=288.63 Aligned_cols=284 Identities=19% Similarity=0.261 Sum_probs=221.1
Q ss_pred EEeccccccEEEE--ecCCCEEEEEeCCCcEEEEECCCC----eEEEEeecCCCcEEEEEEeC---CCEEEEEEcCCeEE
Q 001039 877 ATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTS----QLLEELKGHDAQVSCVRMLS---GERVLTASHDGTVK 947 (1179)
Q Consensus 877 ~~l~~h~~~v~~~--s~d~~~l~sgs~dg~I~iwd~~t~----~~~~~~~~h~~~V~~l~~s~---~~~l~sgs~dg~I~ 947 (1179)
..+.+|...|.++ ++++++|++|+.||+|++||+.++ +....+.+|...|.+++|++ +.++++|+.||.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 4578999999965 799999999999999999999876 57778899999999999984 88999999999999
Q ss_pred EEeCCCC---------eEEEEeccCCCcEEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCceeEEee-------------
Q 001039 948 MWDVRTD---------TCVATVGRCSSAVLCMEYDDS--TGILAAGGRDAVANIWDIRAGRQMHKFL------------- 1003 (1179)
Q Consensus 948 iwd~~~~---------~~~~~~~~~~~~v~~l~~sp~--~~~l~sgs~dg~I~iwD~~~~~~~~~~~------------- 1003 (1179)
+||++++ +.+..+..|...|.+++|+|+ ++++++++.||.|++||+++++.+..+.
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 9999887 567888899999999999999 9999999999999999999887654332
Q ss_pred cCCCCeEEEEEc-----CCEEEEEeCCCcEEEEEccCCee--eEEeecCCcCEEEEEEecCC----CEEEEEeCCCcEEE
Q 001039 1004 GHTKWIRSIRMD-----RDTVITGSDDWTARMWSISRGTC--DAVLACHAGPVQCVEYSSSD----RGIITGSSDGLLRF 1072 (1179)
Q Consensus 1004 ~~~~~I~sl~~~-----~~~l~sgs~dg~I~iwd~~~~~~--~~~~~~h~~~V~~l~~spdg----~~l~sgs~Dg~I~i 1072 (1179)
.|...+.+++|+ ++.+++++.|+.+.+|+...++. ...+.+|...|++++|+|++ ++|++|+.||.|++
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i 244 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI 244 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence 577889999995 55999999999998888877765 66778899999999999998 89999999999999
Q ss_pred EEcCCCCcceEEEeecccCceE--EEEecCCCEEEEEEC----CCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCc
Q 001039 1073 WENDDAGGIKCVKNVTIHSSAI--LSINAGDHWLGIGAA----DNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTV 1146 (1179)
Q Consensus 1073 wd~~~~~~~~~~~~~~~h~~~i--~sis~dg~~lasgs~----Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~ 1146 (1179)
||+........ ...+.... ...++.....+.+.. .+.+.+|+.. ..+....+.+|.
T Consensus 245 wd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~h~ 306 (351)
T 3f3f_A 245 FKITEKLSPLA---SEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNL---------------QVELLSEHDDHN 306 (351)
T ss_dssp EEEEECC------------------------------------------CCSE---------------EEEEEEEECTTS
T ss_pred EeCCCCcCccc---cCCcccceeccCCCcccccccccccccccceeeeecccc---------------cccEEEEEeccc
Confidence 99987432111 11111111 112233333343332 2333344332 126677788999
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001039 1147 AVVRCIASDLERKRICSGGRNGLLRLWEATIN 1178 (1179)
Q Consensus 1147 ~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~tg 1178 (1179)
+.|++++|+|++++|++|+.||.|++|++.++
T Consensus 307 ~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 307 GEVWSVSWNLTGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp SCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred ccEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence 99999999999999999999999999999876
No 98
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=1.2e-29 Score=295.91 Aligned_cols=296 Identities=12% Similarity=0.098 Sum_probs=223.3
Q ss_pred CcceEEEEEccCCCceeeccCc---------eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecc
Q 001039 768 GRSWVQSMFSREASSRSHSFSR---------VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTK 838 (1179)
Q Consensus 768 ~~~i~~~~fSpdg~~las~~~d---------I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~ 838 (1179)
+-+|.+++|+|||++|++|+.+ |++|+++.+...... .........+.+|...|.++++...
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~---------~~~~~~~~~l~~~~~~v~s~~~~~~ 84 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKE---------QFHILSEFALEDNDDSPTAIDASKG 84 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHH---------HEEEEEEEECCTTSCCCCEEEEETT
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceee---------eeeeeeEEEccCCCCceEEEEeCCC
Confidence 4679999999999999998642 899999865421000 0000012357789999999987521
Q ss_pred cceeccccccCCCCEEEEEeCCCcEEEEcCCCCCcee--EEEec-----cccc--cEEEEecCCCEEEEEe--CCCcEEE
Q 001039 839 REVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSEL--RATLK-----GHTR--TVRAINSDRGKVVSGS--DDQSVLV 907 (1179)
Q Consensus 839 ~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~--~~~l~-----~h~~--~v~~~s~d~~~l~sgs--~dg~I~i 907 (1179)
. -+++.+.++..|++|+.|+++++|++....... ..... .+.. .+.+|+|||+++++++ .|++|++
T Consensus 85 ~---~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~i 161 (365)
T 4h5i_A 85 I---ILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRI 161 (365)
T ss_dssp E---EEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEE
T ss_pred E---EEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEE
Confidence 1 111222333444455678899999976333222 11111 1222 2457899999987554 6899999
Q ss_pred EECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEE--eccCCCcEEEEEEcCCCCEEEEEeC
Q 001039 908 WDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVAT--VGRCSSAVLCMEYDDSTGILAAGGR 984 (1179)
Q Consensus 908 wd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~--~~~~~~~v~~l~~sp~~~~l~sgs~ 984 (1179)
||+.+++++..+. |...|.+++|+ ++.++++++. +.+.+|+..+++.... ...|...|.+++|+|+++.+++++.
T Consensus 162 wd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~ 239 (365)
T 4h5i_A 162 IDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASL 239 (365)
T ss_dssp EETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEE
T ss_pred eECCCCcEEEEeC-CCCceEEEEEccCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEec
Confidence 9999999998886 77889999999 6777777774 5567777777766543 3467889999999999999999998
Q ss_pred CC----eEEEEeCCCCce----eEEeecCCCCeEEEEEcC--CEEEEEeCCCcEEEEEccCCeeeEEe-ecCCcCEEEEE
Q 001039 985 DA----VANIWDIRAGRQ----MHKFLGHTKWIRSIRMDR--DTVITGSDDWTARMWSISRGTCDAVL-ACHAGPVQCVE 1053 (1179)
Q Consensus 985 dg----~I~iwD~~~~~~----~~~~~~~~~~I~sl~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~-~~h~~~V~~l~ 1053 (1179)
|+ .++.||+..+.. ...+.+|...|++++|++ ++|++|+.|++|++||+++++++..+ .+|...|++++
T Consensus 240 d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~ 319 (365)
T 4h5i_A 240 KKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVT 319 (365)
T ss_dssp SSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEE
T ss_pred CCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEE
Confidence 87 688999877653 345778999999999965 59999999999999999999999875 78999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEEcCC
Q 001039 1054 YSSSDRGIITGSSDGLLRFWENDD 1077 (1179)
Q Consensus 1054 ~spdg~~l~sgs~Dg~I~iwd~~~ 1077 (1179)
|+|||++|++||.|++|+|||+..
T Consensus 320 fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 320 ISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp ECTTSCEEEEEETTSEEEEEECCT
T ss_pred ECCCCCEEEEEeCCCeEEEEEcCC
Confidence 999999999999999999999965
No 99
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=6.1e-29 Score=287.90 Aligned_cols=287 Identities=14% Similarity=0.178 Sum_probs=241.3
Q ss_pred CceeEEEeccccccEEEE--ecC---CCEEEEEeCCCcEEEEECCC-CeEE-EEeecCCCcEEEEEEe-CCCEEEEEEcC
Q 001039 872 GSELRATLKGHTRTVRAI--NSD---RGKVVSGSDDQSVLVWDKQT-SQLL-EELKGHDAQVSCVRML-SGERVLTASHD 943 (1179)
Q Consensus 872 ~~~~~~~l~~h~~~v~~~--s~d---~~~l~sgs~dg~I~iwd~~t-~~~~-~~~~~h~~~V~~l~~s-~~~~l~sgs~d 943 (1179)
.......+.+|...|.++ +++ |++|++|+.||.|++||+.+ ++.+ ..+.+|...|.+++|+ +++++++|+.|
T Consensus 28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 107 (368)
T 3mmy_A 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCD 107 (368)
T ss_dssp TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCC
Confidence 445667889999999965 787 59999999999999999997 5555 7888999999999999 68899999999
Q ss_pred CeEEEEeCCCCeEEEEeccCCCcEEEEEE--cCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcCCEEEE
Q 001039 944 GTVKMWDVRTDTCVATVGRCSSAVLCMEY--DDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVIT 1021 (1179)
Q Consensus 944 g~I~iwd~~~~~~~~~~~~~~~~v~~l~~--sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~~l~s 1021 (1179)
|.|++||+++++.... ..|...|.+++| +++++++++++.||.|++||+++++.+..+..+. .+.++.+.++.+++
T Consensus 108 g~v~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 185 (368)
T 3mmy_A 108 KTAKMWDLSSNQAIQI-AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIYPMAVV 185 (368)
T ss_dssp SEEEEEETTTTEEEEE-EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEETTEEEE
T ss_pred CcEEEEEcCCCCceee-ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecCCeeEE
Confidence 9999999999987764 478999999999 8999999999999999999999999998887665 67888888899999
Q ss_pred EeCCCcEEEEEccCCeeeEEee--cCCcCEEEEEEecCCCE----EEEEeCCCcEEEEEcCCCCcceEEEeecccCc---
Q 001039 1022 GSDDWTARMWSISRGTCDAVLA--CHAGPVQCVEYSSSDRG----IITGSSDGLLRFWENDDAGGIKCVKNVTIHSS--- 1092 (1179)
Q Consensus 1022 gs~dg~I~iwd~~~~~~~~~~~--~h~~~V~~l~~spdg~~----l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~--- 1092 (1179)
++.++.+++||++......... .+...+.++++.+++.. +++|+.||.|++||++..........+.+|..
T Consensus 186 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~ 265 (368)
T 3mmy_A 186 ATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGT 265 (368)
T ss_dssp EEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC--
T ss_pred EeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccc
Confidence 9999999999998765443322 34456677777766655 99999999999999998543355556666654
Q ss_pred ---------eEEE--EecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEE
Q 001039 1093 ---------AILS--INAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRI 1161 (1179)
Q Consensus 1093 ---------~i~s--is~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~L 1161 (1179)
.|.+ ++|++++|++|+.||.|++||+.+ + +++..+.+|...|++++|+|||++|
T Consensus 266 ~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~---------~------~~~~~~~~~~~~v~~~~~s~~g~~l 330 (368)
T 3mmy_A 266 NTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDA---------R------TKLKTSEQLDQPISACCFNHNGNIF 330 (368)
T ss_dssp --CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTT---------T------EEEEECCCCSSCEEEEEECTTSSCE
T ss_pred cccccccccceEEEEEecCCCEEEEEccCCeEEEEECCC---------C------cEEEEecCCCCCceEEEECCCCCeE
Confidence 4655 479999999999999999999973 3 6677788999999999999999999
Q ss_pred EEEeCCCcEEEEEC
Q 001039 1162 CSGGRNGLLRLWEA 1175 (1179)
Q Consensus 1162 asgs~Dg~I~vWdv 1175 (1179)
++|+.|+..+.|++
T Consensus 331 ~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 331 AYASSYDWSKGHEF 344 (368)
T ss_dssp EEEECCCSTTCGGG
T ss_pred EEEecccccccccc
Confidence 99999986555543
No 100
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=7.2e-29 Score=285.06 Aligned_cols=273 Identities=13% Similarity=0.120 Sum_probs=233.5
Q ss_pred EEeccccccEEE--EecCCCEEEEEeCCCcEEEEECCCCe---EEEEeecCCCcEEEEEEe-CCC-EEEEEEcCCeEEEE
Q 001039 877 ATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQ---LLEELKGHDAQVSCVRML-SGE-RVLTASHDGTVKMW 949 (1179)
Q Consensus 877 ~~l~~h~~~v~~--~s~d~~~l~sgs~dg~I~iwd~~t~~---~~~~~~~h~~~V~~l~~s-~~~-~l~sgs~dg~I~iw 949 (1179)
....+|...|.+ +++++++|++++.||.|++||+.+++ ....+.+|...|.+++|+ ++. .+++|+.||.|++|
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w 84 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV 84 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEE
Confidence 345689999986 58999999999999999999998876 345566899999999999 788 89999999999999
Q ss_pred eC-CCCeEEEEecc--CCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC---------CceeEEeecCCCCeEEEEEcCC
Q 001039 950 DV-RTDTCVATVGR--CSSAVLCMEYDDSTGILAAGGRDAVANIWDIRA---------GRQMHKFLGHTKWIRSIRMDRD 1017 (1179)
Q Consensus 950 d~-~~~~~~~~~~~--~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~---------~~~~~~~~~~~~~I~sl~~~~~ 1017 (1179)
|+ .+++. ..+.. |...|.+++|+| ++.+++++.||.|++||+++ ++.+..+. |...+.+++++++
T Consensus 85 d~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~ 161 (342)
T 1yfq_A 85 DLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSS 161 (342)
T ss_dssp CSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSS
T ss_pred EeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCC
Confidence 99 87765 66777 999999999999 99999999999999999988 77666665 8889999999999
Q ss_pred EEEEEeCCCcEEEEEccC-Ce--eeEEeecCCcCEEEEEEec-CCCEEEEEeCCCcEEEEEcCCCCc---ceEEEeeccc
Q 001039 1018 TVITGSDDWTARMWSISR-GT--CDAVLACHAGPVQCVEYSS-SDRGIITGSSDGLLRFWENDDAGG---IKCVKNVTIH 1090 (1179)
Q Consensus 1018 ~l~sgs~dg~I~iwd~~~-~~--~~~~~~~h~~~V~~l~~sp-dg~~l~sgs~Dg~I~iwd~~~~~~---~~~~~~~~~h 1090 (1179)
.+++++.||.|++||+++ +. .......|...+.+++|+| +++++++|+.||.|++|+++..+. ......+..|
T Consensus 162 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~ 241 (342)
T 1yfq_A 162 RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH 241 (342)
T ss_dssp EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred cEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecc
Confidence 999999999999999988 54 3344556888999999999 999999999999999999987510 1333445555
Q ss_pred Cc---------eEEEE--ecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCC-cccEEEEEEcCCC
Q 001039 1091 SS---------AILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKT-VAVVRCIASDLER 1158 (1179)
Q Consensus 1091 ~~---------~i~si--s~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h-~~~V~~v~fspdg 1158 (1179)
.. .|.++ +|++++|++|+.||.|++||+.+. +....+.+| .+.|++++ |+|
T Consensus 242 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~---------------~~~~~~~~~h~~~v~~~~--~~~ 304 (342)
T 1yfq_A 242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR---------------KKIKNFAKFNEDSVVKIA--CSD 304 (342)
T ss_dssp CCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT---------------EEEEECCCCSSSEEEEEE--ECS
T ss_pred cccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH---------------hHhhhhhcccCCCceEec--CCC
Confidence 43 66555 789999999999999999999733 566777888 99999999 999
Q ss_pred CEEEEEeCCCc
Q 001039 1159 KRICSGGRNGL 1169 (1179)
Q Consensus 1159 ~~Lasgs~Dg~ 1169 (1179)
++|++|+.||+
T Consensus 305 ~~l~s~s~Dg~ 315 (342)
T 1yfq_A 305 NILCLATSDDT 315 (342)
T ss_dssp SEEEEEEECTH
T ss_pred CeEEEEecCCc
Confidence 99999999999
No 101
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=7.6e-29 Score=296.39 Aligned_cols=291 Identities=14% Similarity=0.241 Sum_probs=227.6
Q ss_pred ccccEEE--EecCCCEEEEEeCCCcEEEEECCCCe-----------EEEEeecCC------------CcEEEEEEeC-C-
Q 001039 882 HTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQ-----------LLEELKGHD------------AQVSCVRMLS-G- 934 (1179)
Q Consensus 882 h~~~v~~--~s~d~~~l~sgs~dg~I~iwd~~t~~-----------~~~~~~~h~------------~~V~~l~~s~-~- 934 (1179)
|.+.|.+ ++++|++|++|+.||.|++||+.+++ ....+.+|. ..|.+++|++ +
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 5677775 58999999999999999999999877 578889998 8899999994 4
Q ss_pred -CEEEEEEcCCeEEEEeCCCCeEE---------------------------------------EE-eccCCCcEEEEEEc
Q 001039 935 -ERVLTASHDGTVKMWDVRTDTCV---------------------------------------AT-VGRCSSAVLCMEYD 973 (1179)
Q Consensus 935 -~~l~sgs~dg~I~iwd~~~~~~~---------------------------------------~~-~~~~~~~v~~l~~s 973 (1179)
..+++++.||+|++||+.+++.. .. ..+|...|.+++|+
T Consensus 107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 186 (447)
T 3dw8_B 107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN 186 (447)
T ss_dssp SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence 68999999999999998765432 12 35789999999999
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCC-ceeE-------EeecCCCCeEEEEEcC---CEEEEEeCCCcEEEEEccCCee----
Q 001039 974 DSTGILAAGGRDAVANIWDIRAG-RQMH-------KFLGHTKWIRSIRMDR---DTVITGSDDWTARMWSISRGTC---- 1038 (1179)
Q Consensus 974 p~~~~l~sgs~dg~I~iwD~~~~-~~~~-------~~~~~~~~I~sl~~~~---~~l~sgs~dg~I~iwd~~~~~~---- 1038 (1179)
|+++++++| .||.|++||++++ +.+. .+.+|...|.+++|++ +.+++|+.||.|++||+++++.
T Consensus 187 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 265 (447)
T 3dw8_B 187 SDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRH 265 (447)
T ss_dssp TTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTT
T ss_pred CCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccce
Confidence 999999998 7999999999954 3443 2558999999999964 5899999999999999999887
Q ss_pred eEEeecCCc------------CEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceE------------
Q 001039 1039 DAVLACHAG------------PVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAI------------ 1094 (1179)
Q Consensus 1039 ~~~~~~h~~------------~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i------------ 1094 (1179)
...+..|.. .|++++|+|+|++|++++. |.|++||+.+.+ ..+..+.+|...+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~i 342 (447)
T 3dw8_B 266 SKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMEN--RPVETYQVHEYLRSKLCSLYENDCI 342 (447)
T ss_dssp CEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCS--SCSCCEESCGGGTTTHHHHHHTSGG
T ss_pred eeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCc--cccceeecccccccccccccccccc
Confidence 788888876 8999999999999999999 999999998622 3344455554311
Q ss_pred -----EEEecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccc-----------------cceeeeecCCCcccEEEE
Q 001039 1095 -----LSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMS-----------------GWQLYRTPQKTVAVVRCI 1152 (1179)
Q Consensus 1095 -----~sis~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~-----------------~~~~~~~~~~h~~~V~~v 1152 (1179)
.+++|++++|++|+.||.|++||+.+++...+........ ..........+...|.++
T Consensus 343 ~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 422 (447)
T 3dw8_B 343 FDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHT 422 (447)
T ss_dssp GCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEE
T ss_pred ccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEE
Confidence 6789999999999999999999998665432211110000 000111122455679999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCC
Q 001039 1153 ASDLERKRICSGGRNGLLRLWEATI 1177 (1179)
Q Consensus 1153 ~fspdg~~Lasgs~Dg~I~vWdv~t 1177 (1179)
+|+|+|++||+++.|+ +++|..+.
T Consensus 423 ~~~p~~~~la~~~~~~-~~~~~~~~ 446 (447)
T 3dw8_B 423 AWHPKENIIAVATTNN-LYIFQDKV 446 (447)
T ss_dssp EECSSSSEEEEECSSC-EEEEECCC
T ss_pred EECCCCCEEEEEecce-eeeecccc
Confidence 9999999999998876 88887653
No 102
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=9.8e-28 Score=272.32 Aligned_cols=271 Identities=20% Similarity=0.343 Sum_probs=227.8
Q ss_pred eEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEE--EecCCCEEEEEeCCCcEEE
Q 001039 830 ITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLV 907 (1179)
Q Consensus 830 V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~--~s~d~~~l~sgs~dg~I~i 907 (1179)
.++|+|| +++ +||+|. |++|+|||+..........+.+|...|.+ ++++++++++|+.||+|++
T Consensus 28 ~~~l~WS------------~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~i 93 (318)
T 4ggc_A 28 LNLVDWS------------SGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQL 93 (318)
T ss_dssp CBCEEEC------------TTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred ceEEEEC------------CCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEE
Confidence 4667886 554 777765 99999999873322223345578888886 5899999999999999999
Q ss_pred EECCCCeEEEEeecCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCC-eEEEEeccCCCcEEEEEEcCCCCEEEEEeCCC
Q 001039 908 WDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTD-TCVATVGRCSSAVLCMEYDDSTGILAAGGRDA 986 (1179)
Q Consensus 908 wd~~t~~~~~~~~~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg 986 (1179)
||+.+++.+..+.+|...+.++.+. +..+++|+.++.+++|+..++ ..+..+.+|...+.++.++++++++++++.||
T Consensus 94 w~~~~~~~~~~~~~h~~~~~~~~~~-~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~ 172 (318)
T 4ggc_A 94 WDVQQQKRLRNMTSHSARVGSLSWN-SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDN 172 (318)
T ss_dssp EETTTTEEEEEEECCSSCEEEEEEE-TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred eecCCceeEEEecCccceEEEeecC-CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCc
Confidence 9999999999999999998877654 678999999999999998876 45667788999999999999999999999999
Q ss_pred eEEEEeCCCCce----eEEeecCCCCeEEEEEcCC-----EEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecC
Q 001039 987 VANIWDIRAGRQ----MHKFLGHTKWIRSIRMDRD-----TVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSS 1057 (1179)
Q Consensus 987 ~I~iwD~~~~~~----~~~~~~~~~~I~sl~~~~~-----~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd 1057 (1179)
.|++||+++++. ......+.+.|.++.+.+. .+++++.+++|++||........... +...+..+.|+++
T Consensus 173 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~ 251 (318)
T 4ggc_A 173 LVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPH 251 (318)
T ss_dssp CEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETT
T ss_pred ceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeeccc
Confidence 999999998753 3455678889999998543 34567788999999999887766654 7788999999999
Q ss_pred CCEEEEEe--CCCcEEEEEcCCCCcceEEEeecccCceEEEE--ecCCCEEEEEECCCcEEEEeCC
Q 001039 1058 DRGIITGS--SDGLLRFWENDDAGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRP 1119 (1179)
Q Consensus 1058 g~~l~sgs--~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~si--s~dg~~lasgs~Dg~I~iwd~~ 1119 (1179)
++.+++++ .||.|++||+.+ .+++..+.+|...|.++ +|+|++|++|+.||+|++||+.
T Consensus 252 ~~~~~~~sg~~d~~i~iwd~~~---~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 252 YKELISGHGFAQNQLVIWKYPT---MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF 314 (318)
T ss_dssp TTEEEEEECTTTCCEEEEETTT---CCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred ccceEEEEEcCCCEEEEEECCC---CcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 99988765 799999999998 56778889999999776 7899999999999999999986
No 103
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=1.2e-29 Score=289.57 Aligned_cols=248 Identities=19% Similarity=0.311 Sum_probs=205.3
Q ss_pred EeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCe--EEEEeccCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEe
Q 001039 918 ELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDT--CVATVGRCSSAVLCMEYDD--STGILAAGGRDAVANIWD 992 (1179)
Q Consensus 918 ~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~--~~~~~~~~~~~v~~l~~sp--~~~~l~sgs~dg~I~iwD 992 (1179)
.+.+|.+.|++++|+ ++++|++|+.|++|++||+.+++ .+..+.+|...|.+++|++ ++++|++|+.|+.|++||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 456899999999999 78999999999999999998875 4677889999999999986 489999999999999999
Q ss_pred CCCCc--eeEEeecCCCCeEEEEEcC----CEEEEEeCCCcEEEEEccCCee---eEEeecCCcCEEEEEEecC------
Q 001039 993 IRAGR--QMHKFLGHTKWIRSIRMDR----DTVITGSDDWTARMWSISRGTC---DAVLACHAGPVQCVEYSSS------ 1057 (1179)
Q Consensus 993 ~~~~~--~~~~~~~~~~~I~sl~~~~----~~l~sgs~dg~I~iwd~~~~~~---~~~~~~h~~~V~~l~~spd------ 1057 (1179)
+++++ ....+.+|...|.+++|++ .++++|+.||+|++||++++.. ...+.+|...|.+++|+|+
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence 99874 5677889999999999965 3899999999999999987632 3445689999999999997
Q ss_pred -----------CCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEE--ecCC----CEEEEEECCCcEEEEeCCC
Q 001039 1058 -----------DRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSI--NAGD----HWLGIGAADNSMSLFHRPQ 1120 (1179)
Q Consensus 1058 -----------g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~si--s~dg----~~lasgs~Dg~I~iwd~~~ 1120 (1179)
+++|++|+.|+.|++||+...+....+..+.+|...|.++ +|++ .+|++|+.||+|++||+..
T Consensus 168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 4789999999999999997644456777888999999877 5665 8999999999999999874
Q ss_pred CCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001039 1121 ERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEAT 1176 (1179)
Q Consensus 1121 ~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~ 1176 (1179)
.. .+. + .......|.+.|.+++|+|+|++||+|+.||+|++|+..
T Consensus 248 ~~------~~~----~-~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 248 AS------SNT----W-SPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp TT------CCC----C-BCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred cc------ccc----h-hhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 21 010 0 111234678899999999999999999999999999975
No 104
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=9.2e-29 Score=295.65 Aligned_cols=289 Identities=14% Similarity=0.227 Sum_probs=227.7
Q ss_pred ccCCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEeccc------------Cce
Q 001039 765 SGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHA------------GAI 830 (1179)
Q Consensus 765 ~gh~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~------------~~V 830 (1179)
..|...|.+++|||||++||+|+.| |++||+.++....... .........+.+|. +.|
T Consensus 25 ~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~--------~~~~~~~~~~~~h~~~~~~~~~~~~~~~V 96 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHS--------RGEYNVYSTFQSHEPEFDYLKSLEIEEKI 96 (447)
T ss_dssp CCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCC--------CCCEEEEEEEECCCCEEEGGGTEEECCCC
T ss_pred ccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCccc--------ccceeEecccccccccccccccccccCce
Confidence 4456889999999999999999988 9999998765211100 01112467889998 889
Q ss_pred EEEEeecccceeccccccCCC--CEEEEEeCCCcEEEEcCCCCCce----------------------------------
Q 001039 831 TALHCVTKREVWDLVGDREDA--GFFISGSTDCLVKIWDPSLRGSE---------------------------------- 874 (1179)
Q Consensus 831 ~~v~~s~~~~~~~~~~~s~d~--~~Lasgs~Dg~I~lWd~~~~~~~---------------------------------- 874 (1179)
++++|+ |++ ..|++|+.||+|++||+......
T Consensus 97 ~~l~~~------------~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 164 (447)
T 3dw8_B 97 NKIRWL------------PQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMV 164 (447)
T ss_dssp CEEEEC------------CCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEE
T ss_pred EEEEEc------------CCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheee
Confidence 999998 666 79999999999999997521110
Q ss_pred ---eEEE-eccccccEEE--EecCCCEEEEEeCCCcEEEEECCC-CeEEE-------EeecCCCcEEEEEEeC-C-CEEE
Q 001039 875 ---LRAT-LKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQT-SQLLE-------ELKGHDAQVSCVRMLS-G-ERVL 938 (1179)
Q Consensus 875 ---~~~~-l~~h~~~v~~--~s~d~~~l~sgs~dg~I~iwd~~t-~~~~~-------~~~~h~~~V~~l~~s~-~-~~l~ 938 (1179)
.... ..+|...|.+ ++++++++++| .||+|++||+.+ ++.+. .+.+|...|.+++|++ + ..++
T Consensus 165 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 243 (447)
T 3dw8_B 165 EASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFV 243 (447)
T ss_dssp EEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEE
T ss_pred eccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEE
Confidence 0112 4679888875 58999999998 799999999984 44444 2568999999999994 5 7999
Q ss_pred EEEcCCeEEEEeCCCCeE----EEEeccCCC------------cEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-CceeEE
Q 001039 939 TASHDGTVKMWDVRTDTC----VATVGRCSS------------AVLCMEYDDSTGILAAGGRDAVANIWDIRA-GRQMHK 1001 (1179)
Q Consensus 939 sgs~dg~I~iwd~~~~~~----~~~~~~~~~------------~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~-~~~~~~ 1001 (1179)
+|+.||.|++||+++++. ...+..+.. .|.+++|+|+++++++++. |.|++||+++ ++.+..
T Consensus 244 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~ 322 (447)
T 3dw8_B 244 YSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVET 322 (447)
T ss_dssp EEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCC
T ss_pred EEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccce
Confidence 999999999999999886 678877775 8999999999999999998 9999999997 888888
Q ss_pred eecCCCC---------------eEEEEEc--CCEEEEEeCCCcEEEEEccCCeeeEEee---------------------
Q 001039 1002 FLGHTKW---------------IRSIRMD--RDTVITGSDDWTARMWSISRGTCDAVLA--------------------- 1043 (1179)
Q Consensus 1002 ~~~~~~~---------------I~sl~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~--------------------- 1043 (1179)
+.+|... +..++|+ ++++++|+.||.|++||+.+++.+....
T Consensus 323 ~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (447)
T 3dw8_B 323 YQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGK 402 (447)
T ss_dssp EESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSC
T ss_pred eeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCC
Confidence 8888642 2237775 4589999999999999999987653211
Q ss_pred -----------cCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 001039 1044 -----------CHAGPVQCVEYSSSDRGIITGSSDGLLRFWEND 1076 (1179)
Q Consensus 1044 -----------~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~ 1076 (1179)
.+...|..++|+|++++|++++.++ +++|..+
T Consensus 403 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 403 RKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp CCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred cccccccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 2345688999999999999998877 7788644
No 105
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=1.5e-28 Score=284.60 Aligned_cols=282 Identities=19% Similarity=0.275 Sum_probs=234.5
Q ss_pred ceEEEecccCceEEEEeecccceeccccccCC---CCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEE--EecCC
Q 001039 819 NIRIIRGHAGAITALHCVTKREVWDLVGDRED---AGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDR 893 (1179)
Q Consensus 819 ~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d---~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~--~s~d~ 893 (1179)
.++.+.+|.+.|++++|+ |+ |++|++|+.||.|++||+...+......+.+|...|.+ +++++
T Consensus 31 ~~~~~~~h~~~v~~~~~~------------~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 98 (368)
T 3mmy_A 31 DIEVTSSPDDSIGCLSFS------------PPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDG 98 (368)
T ss_dssp CEECSSCCSSCEEEEEEC------------CTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTS
T ss_pred eeEeccCCCCceEEEEEc------------CCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCC
Confidence 677889999999999998 66 69999999999999999874455555788999999986 58899
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEE--e-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEE
Q 001039 894 GKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRM--L-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCM 970 (1179)
Q Consensus 894 ~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~--s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l 970 (1179)
++|++|+.||.|++||+.+++.+. +.+|...|.+++| + ++..+++++.||.|++||+++++.+..+..+. .+.++
T Consensus 99 ~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~ 176 (368)
T 3mmy_A 99 SKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCA 176 (368)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEE
T ss_pred CEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEE
Confidence 999999999999999999998776 5669999999999 5 56789999999999999999999888886654 56666
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee--cCCCCeEE--EEEcCC----EEEEEeCCCcEEEEEccCC---eee
Q 001039 971 EYDDSTGILAAGGRDAVANIWDIRAGRQMHKFL--GHTKWIRS--IRMDRD----TVITGSDDWTARMWSISRG---TCD 1039 (1179)
Q Consensus 971 ~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~--~~~~~I~s--l~~~~~----~l~sgs~dg~I~iwd~~~~---~~~ 1039 (1179)
.+.+ ..+++++.++.+.+||++......... .+...+.+ +..++. .+++++.||.|++||++.. ...
T Consensus 177 ~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~ 254 (368)
T 3mmy_A 177 DVIY--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDN 254 (368)
T ss_dssp EEET--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHS
T ss_pred EecC--CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccc
Confidence 6654 478889999999999998765443322 22233444 444443 4999999999999999887 567
Q ss_pred EEeecCCc------------CEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEE--ecCCCEEE
Q 001039 1040 AVLACHAG------------PVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSI--NAGDHWLG 1105 (1179)
Q Consensus 1040 ~~~~~h~~------------~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~si--s~dg~~la 1105 (1179)
..+.+|.. .|++++|+|++++|++|+.||.|++||+.+ ..++..+.+|...|.++ +|+|++|+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~s~~g~~l~ 331 (368)
T 3mmy_A 255 FTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDA---RTKLKTSEQLDQPISACCFNHNGNIFA 331 (368)
T ss_dssp EEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTT---TEEEEECCCCSSCEEEEEECTTSSCEE
T ss_pred eeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCC---CcEEEEecCCCCCceEEEECCCCCeEE
Confidence 77777776 799999999999999999999999999998 57778888899888665 79999999
Q ss_pred EEECCCcEEEEeCC
Q 001039 1106 IGAADNSMSLFHRP 1119 (1179)
Q Consensus 1106 sgs~Dg~I~iwd~~ 1119 (1179)
+|+.|+..+.|++.
T Consensus 332 ~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 332 YASSYDWSKGHEFY 345 (368)
T ss_dssp EEECCCSTTCGGGC
T ss_pred EEeccccccccccc
Confidence 99999866666543
No 106
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3e-29 Score=320.88 Aligned_cols=251 Identities=20% Similarity=0.298 Sum_probs=215.4
Q ss_pred eEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEE--ecC--CCE
Q 001039 820 IRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSD--RGK 895 (1179)
Q Consensus 820 ~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~--s~d--~~~ 895 (1179)
+.++.||.+.|++++|+ |++++|++|+.||+|++||+..........+.+|...|.++ +++ +++
T Consensus 2 ~~~l~gH~~~V~~l~~s------------~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~ 69 (753)
T 3jro_A 2 VVIANAHNELIHDAVLD------------YYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTI 69 (753)
T ss_dssp ------CCCCEEEECCC------------SSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSE
T ss_pred eeecccCcceeEEEEEC------------CCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCE
Confidence 35688999999999998 89999999999999999998644567778899999999875 566 899
Q ss_pred EEEEeCCCcEEEEECCCCe--EEEEeecCCCcEEEEEEe-C--CCEEEEEEcCCeEEEEeCCCCe--EEEEeccCCCcEE
Q 001039 896 VVSGSDDQSVLVWDKQTSQ--LLEELKGHDAQVSCVRML-S--GERVLTASHDGTVKMWDVRTDT--CVATVGRCSSAVL 968 (1179)
Q Consensus 896 l~sgs~dg~I~iwd~~t~~--~~~~~~~h~~~V~~l~~s-~--~~~l~sgs~dg~I~iwd~~~~~--~~~~~~~~~~~v~ 968 (1179)
+++|+.||+|++||+.+++ .+..+.+|...|.+++|+ + ++.+++|+.||.|++||++++. ....+..|...|.
T Consensus 70 l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~ 149 (753)
T 3jro_A 70 LASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVN 149 (753)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEE
T ss_pred EEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceE
Confidence 9999999999999999987 777888999999999999 4 7899999999999999998873 3455668899999
Q ss_pred EEEEcC-------------CCCEEEEEeCCCeEEEEeCCCC----ceeEEeecCCCCeEEEEEc-----CCEEEEEeCCC
Q 001039 969 CMEYDD-------------STGILAAGGRDAVANIWDIRAG----RQMHKFLGHTKWIRSIRMD-----RDTVITGSDDW 1026 (1179)
Q Consensus 969 ~l~~sp-------------~~~~l~sgs~dg~I~iwD~~~~----~~~~~~~~~~~~I~sl~~~-----~~~l~sgs~dg 1026 (1179)
+++|+| ++..+++|+.||.|++||++++ .....+.+|...|++++|+ ++.+++|+.||
T Consensus 150 ~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg 229 (753)
T 3jro_A 150 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR 229 (753)
T ss_dssp EEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSS
T ss_pred EEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCC
Confidence 999999 5899999999999999999887 4566788999999999996 45899999999
Q ss_pred cEEEEEccCCe-----eeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcce
Q 001039 1027 TARMWSISRGT-----CDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIK 1082 (1179)
Q Consensus 1027 ~I~iwd~~~~~-----~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~ 1082 (1179)
.|++||+++++ .......|.+.|++++|+|+|+++++|+.||.|++||+...+...
T Consensus 230 ~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~~~~ 290 (753)
T 3jro_A 230 TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWE 290 (753)
T ss_dssp CEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSSCCB
T ss_pred EEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCCCcc
Confidence 99999998864 233344588999999999999999999999999999998754333
No 107
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.6e-28 Score=281.21 Aligned_cols=255 Identities=18% Similarity=0.290 Sum_probs=216.8
Q ss_pred CeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCC--CCeEEEEeccCCCcEEEEEEcCC--CCEEEEEeCCCe
Q 001039 913 SQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVR--TDTCVATVGRCSSAVLCMEYDDS--TGILAAGGRDAV 987 (1179)
Q Consensus 913 ~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~--~~~~~~~~~~~~~~v~~l~~sp~--~~~l~sgs~dg~ 987 (1179)
|+++..+.+|...|.+++|+ ++.++++|+.||.|++||+. +++.+..+..|...|.+++|+++ ++++++|+.||.
T Consensus 1 G~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 80 (379)
T ss_dssp ----CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred CCccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence 35567788999999999999 68899999999999999998 56777888899999999999987 999999999999
Q ss_pred EEEEeCCCCc--eeEEeecCCCCeEEEEEc----CCEEEEEeCCCcEEEEEccCCe--eeEEeecCCcCEEEEEEec---
Q 001039 988 ANIWDIRAGR--QMHKFLGHTKWIRSIRMD----RDTVITGSDDWTARMWSISRGT--CDAVLACHAGPVQCVEYSS--- 1056 (1179)
Q Consensus 988 I~iwD~~~~~--~~~~~~~~~~~I~sl~~~----~~~l~sgs~dg~I~iwd~~~~~--~~~~~~~h~~~V~~l~~sp--- 1056 (1179)
|++||+++++ .+..+..|...|.+++|+ ++.+++++.||.|++||++++. ....+..|...|++++|+|
T Consensus 81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 160 (379)
T 3jrp_A 81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI 160 (379)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-
T ss_pred EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccc
Confidence 9999999987 677788899999999995 4589999999999999998873 4456778999999999999
Q ss_pred ----------CCCEEEEEeCCCcEEEEEcCCCCcc-eEEEeecccCceEEEE--ecC---CCEEEEEECCCcEEEEeCCC
Q 001039 1057 ----------SDRGIITGSSDGLLRFWENDDAGGI-KCVKNVTIHSSAILSI--NAG---DHWLGIGAADNSMSLFHRPQ 1120 (1179)
Q Consensus 1057 ----------dg~~l~sgs~Dg~I~iwd~~~~~~~-~~~~~~~~h~~~i~si--s~d---g~~lasgs~Dg~I~iwd~~~ 1120 (1179)
++.++++|+.||.|++||+.++... .....+.+|...|.++ +|+ +++|++|+.||.|++||+..
T Consensus 161 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~ 240 (379)
T 3jrp_A 161 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 240 (379)
T ss_dssp ---------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred cccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence 6999999999999999999875432 4556778899888766 688 89999999999999999974
Q ss_pred CCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001039 1121 ERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATI 1177 (1179)
Q Consensus 1121 ~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~t 1177 (1179)
.. ... .........|...|++++|+|+|++|++++.||.|++|++.+
T Consensus 241 ~~---------~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 241 EQ---------GPW-KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp TT---------SCC-EEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred CC---------ccc-eeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 31 100 022333456889999999999999999999999999999874
No 108
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=2.2e-27 Score=275.68 Aligned_cols=278 Identities=14% Similarity=0.118 Sum_probs=213.7
Q ss_pred ceEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEEecCCCEE-E
Q 001039 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKV-V 897 (1179)
Q Consensus 819 ~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l-~ 897 (1179)
.+....+|.+.|++++|+ |||++|++|+.|| +++||.+ ..........+...+.++.++++.+ +
T Consensus 11 ~~~~~~~h~~~V~~v~fs------------~dg~~la~g~~~~-~~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (355)
T 3vu4_A 11 PIVPENHVSNPVTDYEFN------------QDQSCLILSTLKS-FEIYNVH--PVAHIMSQEMRHLSKVRMLHRTNYVAF 75 (355)
T ss_dssp --------CCCCCEEEEC------------TTSSEEEEECSSE-EEEEEET--TEEEEEEEECSCCCEEEECTTSSEEEE
T ss_pred CccccccCCCceEEEEEC------------CCCCEEEEEcCCE-EEEEecC--CcceeeeeecCCeEEEEEcCCCCEEEE
Confidence 556678999999999998 8999999998775 7899976 3333333333345556778888877 5
Q ss_pred EEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCC-eEEEEeccCCCcEEEEEEcCCC
Q 001039 898 SGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTD-TCVATVGRCSSAVLCMEYDDST 976 (1179)
Q Consensus 898 sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~~ 976 (1179)
+|+.|++|++||..+++.+..+. +...|.++.++++. ++++ .|+.|++||+.++ +.+..+.. ....+++++
T Consensus 76 ~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~-~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~-- 147 (355)
T 3vu4_A 76 VTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF-IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN-- 147 (355)
T ss_dssp ECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE-EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--
T ss_pred EECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE-EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--
Confidence 67788999999999999999887 66789999998554 3333 4789999999988 66555543 445566676
Q ss_pred CEEEE--EeCCCeEEEEeCCCCc----------------eeEEeecCCCCeEEEEEcC--CEEEEEeCCCc-EEEEEccC
Q 001039 977 GILAA--GGRDAVANIWDIRAGR----------------QMHKFLGHTKWIRSIRMDR--DTVITGSDDWT-ARMWSISR 1035 (1179)
Q Consensus 977 ~~l~s--gs~dg~I~iwD~~~~~----------------~~~~~~~~~~~I~sl~~~~--~~l~sgs~dg~-I~iwd~~~ 1035 (1179)
..+++ |+.||.|++||+++++ .+..+.+|...|.+++|++ +++++|+.||+ |++||+++
T Consensus 148 ~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~ 227 (355)
T 3vu4_A 148 GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTED 227 (355)
T ss_dssp TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTT
T ss_pred cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence 56666 5789999999999875 2678899999999999965 59999999998 99999999
Q ss_pred CeeeEEee-c-CCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEE-------------------Eeecc---cC
Q 001039 1036 GTCDAVLA-C-HAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCV-------------------KNVTI---HS 1091 (1179)
Q Consensus 1036 ~~~~~~~~-~-h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~-------------------~~~~~---h~ 1091 (1179)
++++..+. + |.+.|++++|+|+|++|++|+.||+|++||+......+.. ..+.. ..
T Consensus 228 ~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (355)
T 3vu4_A 228 GVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVR 307 (355)
T ss_dssp CCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCC
T ss_pred CcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCC
Confidence 99999998 5 9999999999999999999999999999999764311100 00111 11
Q ss_pred ceEEEEecCCCEEEEEECCCcEEEEeCC
Q 001039 1092 SAILSINAGDHWLGIGAADNSMSLFHRP 1119 (1179)
Q Consensus 1092 ~~i~sis~dg~~lasgs~Dg~I~iwd~~ 1119 (1179)
..+.+++++|+.+++++.||.+++|++.
T Consensus 308 ~~~~a~~~d~~~l~~~~~dg~~~~~~~~ 335 (355)
T 3vu4_A 308 GCKIAWISESSLVVVWPHTRMIETFKVV 335 (355)
T ss_dssp CCEEEESSSSEEEEEETTTTEEEEEEEE
T ss_pred ceEEEEeCCCCEEEEEeCCCeEEEEEEE
Confidence 2567889999999999999999999986
No 109
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.96 E-value=8.9e-28 Score=283.70 Aligned_cols=276 Identities=19% Similarity=0.264 Sum_probs=229.4
Q ss_pred EEEEccCCCcee-eccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceeccccccC
Q 001039 773 QSMFSREASSRS-HSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDRE 849 (1179)
Q Consensus 773 ~~~fSpdg~~la-s~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~ 849 (1179)
.++++|+...++ +++.+ |++|++...... ...+..+.+|.+.|++++|+ |
T Consensus 39 ~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~---------------~~~~~~~~~h~~~V~~~~~~------------p 91 (402)
T 2aq5_A 39 FCAVNPKFMALICEASGGGAFLVLPLGKTGRV---------------DKNVPLVCGHTAPVLDIAWC------------P 91 (402)
T ss_dssp SEEECSSEEEEEBCCSSSCCEEEEETTCCEEC---------------CTTCCCBCCCSSCEEEEEEC------------T
T ss_pred cEEECCCeEEEEEEEcCCCEEEEEECccCCCC---------------CCCCceEecCCCCEEEEEeC------------C
Confidence 478999886554 45555 999999754311 11455688999999999998 6
Q ss_pred -CCCEEEEEeCCCcEEEEcCCCCCc-----eeEEEeccccccEEEE--ecCC-CEEEEEeCCCcEEEEECCCCeEEEEe-
Q 001039 850 -DAGFFISGSTDCLVKIWDPSLRGS-----ELRATLKGHTRTVRAI--NSDR-GKVVSGSDDQSVLVWDKQTSQLLEEL- 919 (1179)
Q Consensus 850 -d~~~Lasgs~Dg~I~lWd~~~~~~-----~~~~~l~~h~~~v~~~--s~d~-~~l~sgs~dg~I~iwd~~t~~~~~~~- 919 (1179)
++++|++|+.||+|++||+...+. .....+.+|...|.++ ++++ +.+++|+.||+|++||+.+++.+..+
T Consensus 92 ~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 171 (402)
T 2aq5_A 92 HNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG 171 (402)
T ss_dssp TCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred CCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEe
Confidence 899999999999999999874322 4567889999999864 7887 69999999999999999999999999
Q ss_pred -ecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEe-ccCCCc-EEEEEEcCCCCEEEEE---eCCCeEEEEe
Q 001039 920 -KGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATV-GRCSSA-VLCMEYDDSTGILAAG---GRDAVANIWD 992 (1179)
Q Consensus 920 -~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~-~~~~~~-v~~l~~sp~~~~l~sg---s~dg~I~iwD 992 (1179)
.+|...|.+++|+ ++..+++++.||.|++||+++++.+..+ ..|.+. +.+++|+|+++++++| +.|+.|++||
T Consensus 172 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd 251 (402)
T 2aq5_A 172 PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWD 251 (402)
T ss_dssp TTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEE
T ss_pred cCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEc
Confidence 8899999999999 6889999999999999999999999888 677665 8999999999999999 7899999999
Q ss_pred CCCCce-eEEee-cCCCCeEEEEEcCC--EEE-EEeCCCcEEEEEccCCee-eEEeec--CCcCEEEEEEecCCCEEEEE
Q 001039 993 IRAGRQ-MHKFL-GHTKWIRSIRMDRD--TVI-TGSDDWTARMWSISRGTC-DAVLAC--HAGPVQCVEYSSSDRGIITG 1064 (1179)
Q Consensus 993 ~~~~~~-~~~~~-~~~~~I~sl~~~~~--~l~-sgs~dg~I~iwd~~~~~~-~~~~~~--h~~~V~~l~~spdg~~l~sg 1064 (1179)
+++++. +.... .+...+.+++|+++ .++ +|+.||.|++||+.+++. +..+.. |...|++++|+|++.++++
T Consensus 252 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s- 330 (402)
T 2aq5_A 252 TKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN- 330 (402)
T ss_dssp TTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG-
T ss_pred CccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee-
Confidence 998765 33332 57778999999654 665 566899999999998874 444443 5689999999999998774
Q ss_pred eCCCcEEEEEcCC
Q 001039 1065 SSDGLLRFWENDD 1077 (1179)
Q Consensus 1065 s~Dg~I~iwd~~~ 1077 (1179)
.++.+++|++.+
T Consensus 331 -~~~~~~~~~l~~ 342 (402)
T 2aq5_A 331 -KCEIARFYKLHE 342 (402)
T ss_dssp -GTEEEEEEEEET
T ss_pred -cceeEEEEEcCC
Confidence 567999999987
No 110
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.96 E-value=1e-27 Score=283.30 Aligned_cols=277 Identities=18% Similarity=0.233 Sum_probs=226.0
Q ss_pred EEEecCCCEE-EEEeCCCcEEEEECCCCe----EEEEeecCCCcEEEEEEe--CCCEEEEEEcCCeEEEEeCCCC-----
Q 001039 887 RAINSDRGKV-VSGSDDQSVLVWDKQTSQ----LLEELKGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTD----- 954 (1179)
Q Consensus 887 ~~~s~d~~~l-~sgs~dg~I~iwd~~t~~----~~~~~~~h~~~V~~l~~s--~~~~l~sgs~dg~I~iwd~~~~----- 954 (1179)
.+++++...+ ++++.||.|++||+.+.. .+..+.+|.+.|.+++|+ +++++++|+.||+|++||+.++
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~ 119 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLP 119 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSC
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccc
Confidence 3455555443 357889999999996643 244577899999999999 4789999999999999999988
Q ss_pred --eEEEEeccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEe--ecCCCCeEEEEEc--CCEEEEEeCCCc
Q 001039 955 --TCVATVGRCSSAVLCMEYDDST-GILAAGGRDAVANIWDIRAGRQMHKF--LGHTKWIRSIRMD--RDTVITGSDDWT 1027 (1179)
Q Consensus 955 --~~~~~~~~~~~~v~~l~~sp~~-~~l~sgs~dg~I~iwD~~~~~~~~~~--~~~~~~I~sl~~~--~~~l~sgs~dg~ 1027 (1179)
+.+..+.+|...|.+++|+|++ +++++|+.||.|++||+++++.+..+ .+|...|.+++|+ ++.+++++.||.
T Consensus 120 ~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 199 (402)
T 2aq5_A 120 LREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKR 199 (402)
T ss_dssp BCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSE
T ss_pred cCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCc
Confidence 5678888999999999999998 69999999999999999999999999 7899999999995 459999999999
Q ss_pred EEEEEccCCeeeEEe-ecCCcC-EEEEEEecCCCEEEEE---eCCCcEEEEEcCCCCcceEEEeecccCceE--EEEecC
Q 001039 1028 ARMWSISRGTCDAVL-ACHAGP-VQCVEYSSSDRGIITG---SSDGLLRFWENDDAGGIKCVKNVTIHSSAI--LSINAG 1100 (1179)
Q Consensus 1028 I~iwd~~~~~~~~~~-~~h~~~-V~~l~~spdg~~l~sg---s~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i--~sis~d 1100 (1179)
|++||+++++.+..+ .+|.+. +.+++|+|+++++++| +.|+.|++||+.+.......... .+...+ .+++++
T Consensus 200 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~ 278 (402)
T 2aq5_A 200 VRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL-DTSSGVLLPFFDPD 278 (402)
T ss_dssp EEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC-CCCSSCEEEEEETT
T ss_pred EEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec-cCCCceeEEEEcCC
Confidence 999999999999988 688776 8999999999999999 79999999999885532223322 344444 455899
Q ss_pred CCEEEE-EECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001039 1101 DHWLGI-GAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATIN 1178 (1179)
Q Consensus 1101 g~~las-gs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~tg 1178 (1179)
++++++ |+.||.|++||+.+.+ .. ...+.... |...|++++|+|++.++++ .|+.+++|++.++
T Consensus 279 ~~~l~~~g~~dg~i~i~d~~~~~---------~~--~~~l~~~~-~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~ 343 (402)
T 2aq5_A 279 TNIVYLCGKGDSSIRYFEITSEA---------PF--LHYLSMFS-SKESQRGMGYMPKRGLEVN--KCEIARFYKLHER 343 (402)
T ss_dssp TTEEEEEETTCSCEEEEEECSST---------TC--EEEEEEEC-CSSCCSEEEECCGGGSCGG--GTEEEEEEEEETT
T ss_pred CCEEEEEEcCCCeEEEEEecCCC---------cc--eEeecccc-cCCcccceEEeccccccee--cceeEEEEEcCCC
Confidence 999975 5579999999997432 10 02222222 6689999999999998874 5779999999775
No 111
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.2e-28 Score=292.00 Aligned_cols=293 Identities=8% Similarity=0.032 Sum_probs=227.1
Q ss_pred cc-cCCCCC-CCC---C----CCCCCcccccCCcceEEEEEccCCCceeeccCceEeeeCCCCCCCCCCCCCCCCCCCcc
Q 001039 745 GM-PSPLSK-DAT---N----DDQQPAEASGIGRSWVQSMFSREASSRSHSFSRVRKWTSDAANENGTPRKQDSTAGGKK 815 (1179)
Q Consensus 745 ~~-fSP~g~-~~~---~----~~~~~~~~~gh~~~i~~~~fSpdg~~las~~~dI~vWd~~~~~~~~~~~~~~~~~~~~~ 815 (1179)
++ |||||+ ... + +........||...+.+++||||| .++.|++.+++.
T Consensus 20 sv~~SpDG~~iASas~D~TV~d~~~~~~l~gh~~~v~~V~FsPdg--------~~~~~~~~~~~~--------------- 76 (588)
T 2j04_A 20 NLTWARDGTLYLTTFPDISIGQPKYAKDINCNSKNLFHVKEFPLE--------FENKLDFELAQQ--------------- 76 (588)
T ss_dssp CEEECTTSCEEEECSSSEEEEEECCCSCCSSBGGGTEEEEEECCC--------CCCTTTTSCCCS---------------
T ss_pred EEEECCCCCEEEEEcCCceeecccccceecCCCccEEEEEECCCC--------CcceEEEEeCCC---------------
Confidence 77 999998 111 0 112222336899999999999999 234555554331
Q ss_pred cccceEEEe-cccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccc-----cEE--
Q 001039 816 IQSNIRIIR-GHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTR-----TVR-- 887 (1179)
Q Consensus 816 ~~~~~~~l~-gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~-----~v~-- 887 (1179)
...+. +|...|++++|| |||++||+++.||+|++||.+ + +...+. |.. .+.
T Consensus 77 ----~~~~~~~~~~~V~~vawS------------PdG~~LAs~s~dg~V~iwd~~--~--~l~~l~-~~~~~~~~sv~sv 135 (588)
T 2j04_A 77 ----NGLLNSQPVCYPRVCKPS------------PIDDWMAVLSNNGNVSVFKDN--K--MLTNLD-SKGNLSSRTYHCF 135 (588)
T ss_dssp ----SCSSTTSCSCCEEEEEEC------------SSSSCEEEEETTSCEEEEETT--E--EEEECC-CSSCSTTTCEEEE
T ss_pred ----ceEeecCCCCcEEEEEEC------------CCCCEEEEEeCCCcEEEEeCC--c--eeeecc-CCCccccccEEEE
Confidence 11122 568899999998 899999999999999999944 2 555666 664 366
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCe-------EEEEe----ecCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeE
Q 001039 888 AINSDRGKVVSGSDDQSVLVWDKQTSQ-------LLEEL----KGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTC 956 (1179)
Q Consensus 888 ~~s~d~~~l~sgs~dg~I~iwd~~t~~-------~~~~~----~~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~ 956 (1179)
+|||||++|++|+.||+|++||+.++. .+.++ .+|.+.|.+++|+++. +++++.|++|++||+.+++.
T Consensus 136 afSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~ 214 (588)
T 2j04_A 136 EWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSH 214 (588)
T ss_dssp EECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSS
T ss_pred EEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCcc
Confidence 468999999999999999999999885 36776 6778899999999766 99999999999999988773
Q ss_pred ---EEEe-ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEE--cCC--EEEEEeCCCcE
Q 001039 957 ---VATV-GRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM--DRD--TVITGSDDWTA 1028 (1179)
Q Consensus 957 ---~~~~-~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~--~~~--~l~sgs~dg~I 1028 (1179)
..++ .+|...|.+++|+ |+.+++++ ++.|++||+.+++......+|...+.++++ +++ .++++++||+
T Consensus 215 ~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~- 290 (588)
T 2j04_A 215 QPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY- 290 (588)
T ss_dssp CCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-
T ss_pred ccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-
Confidence 3556 4778899999999 68888887 699999999988774444489999999999 766 7999999999
Q ss_pred EEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEE--EEecCCCEEEE
Q 001039 1029 RMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAIL--SINAGDHWLGI 1106 (1179)
Q Consensus 1029 ~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~--sis~dg~~las 1106 (1179)
++|..+ .++++||+..+++. |+++++|+...+. +..+.+ ...|. +++|||+.+|+
T Consensus 291 klw~~d----------------~~~~spd~~l~a~~--d~~v~lW~~~g~~----l~~~~~-~~~I~~va~SPdG~~lA~ 347 (588)
T 2j04_A 291 KVLLED----------------ELHVTADNIIAPYL--EKKFKKWSTIWNE----FNNYET-TLVIHGISLSPDGYSIAI 347 (588)
T ss_dssp EEEESS----------------SEEEECCCSSHHHH--HHHHHHTTTTTTS----SSSSCC-EEEEEEEEECTTSSEEEE
T ss_pred EEEeec----------------cEEECCCceEEEEc--CCEEEEEECCCCc----eeeecc-ceEEEEEEECCCCCEEEE
Confidence 999977 26699999887764 9999999876522 223333 44554 45899999999
Q ss_pred EEC
Q 001039 1107 GAA 1109 (1179)
Q Consensus 1107 gs~ 1109 (1179)
++.
T Consensus 348 ~~~ 350 (588)
T 2j04_A 348 VYD 350 (588)
T ss_dssp EEE
T ss_pred EEe
Confidence 864
No 112
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=5.5e-27 Score=272.31 Aligned_cols=292 Identities=11% Similarity=0.153 Sum_probs=212.9
Q ss_pred ceeEEEeccccccEEE--EecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEE-EEEEcCCeEEE
Q 001039 873 SELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERV-LTASHDGTVKM 948 (1179)
Q Consensus 873 ~~~~~~l~~h~~~v~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l-~sgs~dg~I~i 948 (1179)
...+....+|...|.+ |++||++|++|+.+| +++||..+++.......+ .+..+++. +++.+ ++|+.|++|++
T Consensus 9 ~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~v~i 85 (355)
T 3vu4_A 9 RNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLHRTNYVAFVTGVKEVVHI 85 (355)
T ss_dssp ----------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECTTSSEEEEECSSTTEEEE
T ss_pred cCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcCCCCEEEEEECCccEEEE
Confidence 3444566889888885 589999999998775 789999988776655433 36666666 45555 67788899999
Q ss_pred EeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-ceeEEeecCCCCeEEEEEcCCEEEE--EeCC
Q 001039 949 WDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAG-RQMHKFLGHTKWIRSIRMDRDTVIT--GSDD 1025 (1179)
Q Consensus 949 wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~-~~~~~~~~~~~~I~sl~~~~~~l~s--gs~d 1025 (1179)
||..+++.+..+. +...|.+++++++. ++++ .++.|++||+.++ +.+..+.. ....++++++.+++ |+.|
T Consensus 86 Wd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~~~la~~sg~~~ 158 (355)
T 3vu4_A 86 WDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSNGLLVYSNEFNL 158 (355)
T ss_dssp EETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEETTEEEEEESSCT
T ss_pred EECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEccEEEEeCCCcC
Confidence 9999999998885 66789999998864 4444 4789999999988 66666554 33344455577776 5899
Q ss_pred CcEEEEEccCCe----------------eeEEeecCCcCEEEEEEecCCCEEEEEeCCCc-EEEEEcCCCCcceEEEeec
Q 001039 1026 WTARMWSISRGT----------------CDAVLACHAGPVQCVEYSSSDRGIITGSSDGL-LRFWENDDAGGIKCVKNVT 1088 (1179)
Q Consensus 1026 g~I~iwd~~~~~----------------~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~-I~iwd~~~~~~~~~~~~~~ 1088 (1179)
|.|++||++++. ....+.+|.+.|++++|+|+|++|++|+.||+ |++||+.+ .+++..+.
T Consensus 159 g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~---~~~~~~~~ 235 (355)
T 3vu4_A 159 GQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTED---GVLVREFR 235 (355)
T ss_dssp TCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTT---CCEEEEEE
T ss_pred cEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCC---CcEEEEEE
Confidence 999999999865 26788999999999999999999999999998 99999998 45666666
Q ss_pred -c-cCceEEEE--ecCCCEEEEEECCCcEEEEeCCCCCcCcccCC-C-----Cccccce--eeeecCCCcccEEEEEEcC
Q 001039 1089 -I-HSSAILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGT-G-----SKMSGWQ--LYRTPQKTVAVVRCIASDL 1156 (1179)
Q Consensus 1089 -~-h~~~i~si--s~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~-g-----~~~~~~~--~~~~~~~h~~~V~~v~fsp 1156 (1179)
+ |...|.++ +|+|++|++|+.|++|++||+..........- + .....|. .......+......++|++
T Consensus 236 ~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 315 (355)
T 3vu4_A 236 RGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWIS 315 (355)
T ss_dssp CTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESS
T ss_pred cCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeC
Confidence 4 88888665 79999999999999999999975422110000 0 0000111 1111222333456799999
Q ss_pred CCCEEEEEeCCCcEEEEECCC
Q 001039 1157 ERKRICSGGRNGLLRLWEATI 1177 (1179)
Q Consensus 1157 dg~~Lasgs~Dg~I~vWdv~t 1177 (1179)
||+.|++++.||.+++|++.+
T Consensus 316 d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 316 ESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp SSEEEEEETTTTEEEEEEEEE
T ss_pred CCCEEEEEeCCCeEEEEEEEc
Confidence 999999999999999999865
No 113
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=2.4e-25 Score=265.11 Aligned_cols=300 Identities=9% Similarity=0.095 Sum_probs=234.2
Q ss_pred EEeCCCcEEEEcCCC--CCceeEEEeccccccE-EEEecCCCEEEEEeCCCcEEEEECCCCeEEE-----EeecCCCcEE
Q 001039 856 SGSTDCLVKIWDPSL--RGSELRATLKGHTRTV-RAINSDRGKVVSGSDDQSVLVWDKQTSQLLE-----ELKGHDAQVS 927 (1179)
Q Consensus 856 sgs~Dg~I~lWd~~~--~~~~~~~~l~~h~~~v-~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~-----~~~~h~~~V~ 927 (1179)
+++.|+.+++|.++. ........+..+.... .++++++..+++++.+++|++||+.+++... .+.+|...|.
T Consensus 94 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~ 173 (433)
T 3bws_A 94 RKPEELNEKLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVE 173 (433)
T ss_dssp SSGGGGTTCEEECCBTTCSEEEEEEEECSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEE
T ss_pred cccCCCceEEEEECCCCCcceEEEEEcCCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCcee
Confidence 455566555555543 2224555555554332 3678877778888889999999999999887 3457888999
Q ss_pred EEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeEEeecC
Q 001039 928 CVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGG-RDAVANIWDIRAGRQMHKFLGH 1005 (1179)
Q Consensus 928 ~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs-~dg~I~iwD~~~~~~~~~~~~~ 1005 (1179)
+++|+ ++..+++++.|+.|++||+++++.+..+..+...+.+++|+|+++.+++++ .|+.|++||+++++.+..+..+
T Consensus 174 ~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 253 (433)
T 3bws_A 174 TISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI 253 (433)
T ss_dssp EEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC
T ss_pred EEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC
Confidence 99998 577788999999999999999999999888889999999999999886555 7999999999999888877654
Q ss_pred CCCeEEEEEcC--CEEEEEe--------CCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEE-EEEeCCCcEEEEE
Q 001039 1006 TKWIRSIRMDR--DTVITGS--------DDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGI-ITGSSDGLLRFWE 1074 (1179)
Q Consensus 1006 ~~~I~sl~~~~--~~l~sgs--------~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l-~sgs~Dg~I~iwd 1074 (1179)
..+.++++++ +.+++++ .||.|++||+.+++....+. |...+.+++|+|+++.+ ++++.|+.|++||
T Consensus 254 -~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d 331 (433)
T 3bws_A 254 -GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYD 331 (433)
T ss_dssp -SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEE
T ss_pred -CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEE
Confidence 4588999964 4787777 58899999999998777663 56689999999999765 5668999999999
Q ss_pred cCCCCcceEEEeecccCceE--EEEecCCCEEEEEEC---------------CCcEEEEeCCCCCcCcccCCCCccccce
Q 001039 1075 NDDAGGIKCVKNVTIHSSAI--LSINAGDHWLGIGAA---------------DNSMSLFHRPQERLGGFSGTGSKMSGWQ 1137 (1179)
Q Consensus 1075 ~~~~~~~~~~~~~~~h~~~i--~sis~dg~~lasgs~---------------Dg~I~iwd~~~~~~~~~~~~g~~~~~~~ 1137 (1179)
+.++ +....+. +...+ .+++++|+++++++. ||.|++||+.+. +
T Consensus 332 ~~~~---~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~---------------~ 392 (433)
T 3bws_A 332 LKEK---KVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD---------------T 392 (433)
T ss_dssp TTTT---EEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT---------------E
T ss_pred CCCC---cEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCC---------------c
Confidence 9873 4444443 33444 455899999998877 579999998733 3
Q ss_pred eeeecCCCcccEEEEEEcCCCCEEEEEeC-CCcEEEEECCC
Q 001039 1138 LYRTPQKTVAVVRCIASDLERKRICSGGR-NGLLRLWEATI 1177 (1179)
Q Consensus 1138 ~~~~~~~h~~~V~~v~fspdg~~Lasgs~-Dg~I~vWdv~t 1177 (1179)
....... ...+.+++|+|||++|++++. |++|++|+++.
T Consensus 393 ~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 393 VKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred EEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 3333333 456899999999999998875 99999999863
No 114
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=2.3e-26 Score=256.73 Aligned_cols=254 Identities=13% Similarity=0.117 Sum_probs=199.2
Q ss_pred ceeeccCc-eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccc-------------eeccccc
Q 001039 782 SRSHSFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKRE-------------VWDLVGD 847 (1179)
Q Consensus 782 ~las~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~-------------~~~~~~~ 847 (1179)
.+++++.. |++|+...+.. .+.++++.+|+.+|..|.+.|+.. ....+++
T Consensus 56 ~~~~~~~~~v~lw~~~~~~~----------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~ 119 (356)
T 2w18_A 56 CIITACEDVVSLWKALDAWQ----------------WEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFC 119 (356)
T ss_dssp EEEEEESSEEEEEEESSSSB----------------EEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC
T ss_pred EEEEeccceEEEcccCCCcc----------------ceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEE
Confidence 57777888 99999987621 127899999999999999987321 2334556
Q ss_pred cCC----CCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEEEe--CCCcEEEEEC-CCCeEEEEee
Q 001039 848 RED----AGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGS--DDQSVLVWDK-QTSQLLEELK 920 (1179)
Q Consensus 848 s~d----~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~sgs--~dg~I~iwd~-~t~~~~~~~~ 920 (1179)
+|| ++++++++.+ +++|+ + ++++.+.+++ .|++|++|++ .+|+.+..+.
T Consensus 120 spd~~~~~~~l~s~g~~--~~v~~---------------------l-~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~ 175 (356)
T 2w18_A 120 SSDDESEKQVLLKSGNI--KAVLG---------------------L-TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQF 175 (356)
T ss_dssp ------CCEEEEEEEEE--EEEEE---------------------E-TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEE
T ss_pred CCCccccccEEEeCCCe--EEEEe---------------------c-CCCcEEEecccCCCCcEEEEEECCCCceeeeec
Confidence 666 6666666633 55553 2 3444455533 5999999999 5588888888
Q ss_pred cCCCcEEEEEEe----CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCC---CcEEEEEEcCCCCEE------------EE
Q 001039 921 GHDAQVSCVRML----SGERVLTASHDGTVKMWDVRTDTCVATVGRCS---SAVLCMEYDDSTGIL------------AA 981 (1179)
Q Consensus 921 ~h~~~V~~l~~s----~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~---~~v~~l~~sp~~~~l------------~s 981 (1179)
+|...+..++|+ ++..+++|+.|++|++||+.+|++++++.+|. ..+.+++|+|+|.++ ++
T Consensus 176 ~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laS 255 (356)
T 2w18_A 176 LMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESL 255 (356)
T ss_dssp ECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC----------
T ss_pred cCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeec
Confidence 898888888887 35899999999999999999999999997643 367788999999876 56
Q ss_pred EeCCCeEEEEeCCCCceeEEe-----ecCCCCeEEEEEcCCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEE-EEEEe
Q 001039 982 GGRDAVANIWDIRAGRQMHKF-----LGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQ-CVEYS 1055 (1179)
Q Consensus 982 gs~dg~I~iwD~~~~~~~~~~-----~~~~~~I~sl~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~-~l~~s 1055 (1179)
|+.|++|++||..+++.+..+ .+|...+.+..+++..+++|+.||+|++||+.+++++.++.+|...+. +++|+
T Consensus 256 Gs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafS 335 (356)
T 2w18_A 256 RSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWS 335 (356)
T ss_dssp --CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEEC
T ss_pred cCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEEC
Confidence 788999999999999987765 367666767777788999999999999999999999999999987655 58999
Q ss_pred cCCCEEEEEeCCCcEEEEEc
Q 001039 1056 SSDRGIITGSSDGLLRFWEN 1075 (1179)
Q Consensus 1056 pdg~~l~sgs~Dg~I~iwd~ 1075 (1179)
|||++|++|+.|++|++||.
T Consensus 336 PDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 336 GTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp SSSSEEEEECTTSCEEEEEE
T ss_pred CCCCEEEEEECCCcEEEecC
Confidence 99999999999999999985
No 115
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.95 E-value=3e-26 Score=273.44 Aligned_cols=246 Identities=20% Similarity=0.375 Sum_probs=214.2
Q ss_pred eEEEecccCceEEEEeecccceeccccccCC-CCEEEEEeCCCcEEEEcCCC--------CCceeEEEeccccccEEE--
Q 001039 820 IRIIRGHAGAITALHCVTKREVWDLVGDRED-AGFFISGSTDCLVKIWDPSL--------RGSELRATLKGHTRTVRA-- 888 (1179)
Q Consensus 820 ~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d-~~~Lasgs~Dg~I~lWd~~~--------~~~~~~~~l~~h~~~v~~-- 888 (1179)
.....+|.+.|++++|+ |+ +.+|++|+.||.|++||+.. ........+.+|...+.+
T Consensus 121 ~~~~~~h~~~v~~l~~~------------p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 188 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYM------------PQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLS 188 (430)
T ss_dssp EEEEEEESSCCSEEEEE------------TTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEE
T ss_pred EEEEEcCCCcEEEEEEC------------CCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEE
Confidence 45677899999999998 55 78999999999999999863 114556778899988875
Q ss_pred EecCCC-EEEEEeCCCcEEEEECCCCeE-------EEEeecCCCcEEEEEEeC--CCEEEEEEcCCeEEEEeCCCC---e
Q 001039 889 INSDRG-KVVSGSDDQSVLVWDKQTSQL-------LEELKGHDAQVSCVRMLS--GERVLTASHDGTVKMWDVRTD---T 955 (1179)
Q Consensus 889 ~s~d~~-~l~sgs~dg~I~iwd~~t~~~-------~~~~~~h~~~V~~l~~s~--~~~l~sgs~dg~I~iwd~~~~---~ 955 (1179)
+++++. +|++|+.||+|++||+.++.. ...+.+|...|.+++|++ +..+++++.||.|++||++++ +
T Consensus 189 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~ 268 (430)
T 2xyi_A 189 WNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK 268 (430)
T ss_dssp ECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSS
T ss_pred eCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCc
Confidence 578887 999999999999999987321 456778999999999984 678999999999999999987 5
Q ss_pred EEEEeccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEeCCC-CceeEEeecCCCCeEEEEEcCC---EEEEEeCCCcEEE
Q 001039 956 CVATVGRCSSAVLCMEYDDSTG-ILAAGGRDAVANIWDIRA-GRQMHKFLGHTKWIRSIRMDRD---TVITGSDDWTARM 1030 (1179)
Q Consensus 956 ~~~~~~~~~~~v~~l~~sp~~~-~l~sgs~dg~I~iwD~~~-~~~~~~~~~~~~~I~sl~~~~~---~l~sgs~dg~I~i 1030 (1179)
.+..+..|...|.+++|+|++. ++++|+.||.|++||+++ +..+..+.+|...|.+++|+++ .+++++.||.|++
T Consensus 269 ~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~i 348 (430)
T 2xyi_A 269 PSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV 348 (430)
T ss_dssp CSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEE
T ss_pred ceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEE
Confidence 6777778999999999999887 688999999999999998 5678889999999999999653 6999999999999
Q ss_pred EEccC--------------CeeeEEeecCCcCEEEEEEecCCC-EEEEEeCCCcEEEEEcCC
Q 001039 1031 WSISR--------------GTCDAVLACHAGPVQCVEYSSSDR-GIITGSSDGLLRFWENDD 1077 (1179)
Q Consensus 1031 wd~~~--------------~~~~~~~~~h~~~V~~l~~spdg~-~l~sgs~Dg~I~iwd~~~ 1077 (1179)
||+.. .+.+....+|...|++++|+|+++ ++++++.||.|++|++..
T Consensus 349 wd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 349 WDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp EEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred EeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 99987 356777888999999999999999 899999999999999875
No 116
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3e-26 Score=275.04 Aligned_cols=295 Identities=13% Similarity=0.091 Sum_probs=226.3
Q ss_pred cceEEEEEccCCCceeeccCc-eEeeeCCCCC---CCCCCCCCCC--------------------CC-------------
Q 001039 769 RSWVQSMFSREASSRSHSFSR-VRKWTSDAAN---ENGTPRKQDS--------------------TA------------- 811 (1179)
Q Consensus 769 ~~i~~~~fSpdg~~las~~~d-I~vWd~~~~~---~~~~~~~~~~--------------------~~------------- 811 (1179)
.++.+++|||||++++++..+ |++||+.+++ .......... ..
T Consensus 5 ~p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSI 84 (450)
T ss_dssp CCCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC------------------------------------
T ss_pred ccEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccc
Confidence 467788999999988887766 9999998877 2111000000 00
Q ss_pred --CCcccccceEEEecccCceEEEEeecccceeccccccCCCCEE-EEEeCCCcEEEEcCCCCCceeEEEec--cccccE
Q 001039 812 --GGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFF-ISGSTDCLVKIWDPSLRGSELRATLK--GHTRTV 886 (1179)
Q Consensus 812 --~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~L-asgs~Dg~I~lWd~~~~~~~~~~~l~--~h~~~v 886 (1179)
...+.........+|.+.|++++|+ |++++| ++|+.||+|++||+..........+. .|...|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~v~~~~~s------------~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v 152 (450)
T 2vdu_B 85 KRTAAKVPSPGLGAPPIYSYIRNLRLT------------SDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRP 152 (450)
T ss_dssp ---------------CCCCCEEEEEEC------------TTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCE
T ss_pred cccCccccCCCCCCCccCCceEEEEEc------------CCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCc
Confidence 0000011122345788899999998 899996 89999999999997632344555555 566777
Q ss_pred EE--EecCCCEEEEEeCCCcEEEEECCCCeEEE----EeecCCCcEEEEEEe-C---CCEEEEEEcCCeEEEEeCCCCeE
Q 001039 887 RA--INSDRGKVVSGSDDQSVLVWDKQTSQLLE----ELKGHDAQVSCVRML-S---GERVLTASHDGTVKMWDVRTDTC 956 (1179)
Q Consensus 887 ~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~----~~~~h~~~V~~l~~s-~---~~~l~sgs~dg~I~iwd~~~~~~ 956 (1179)
.+ +++++++|++|+.||.|++|++.+++... .+.+|...|.+++|+ + +.++++|+.|++|++||+.+++.
T Consensus 153 ~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~ 232 (450)
T 2vdu_B 153 NAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFI 232 (450)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTC
T ss_pred eEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCce
Confidence 75 58999999999999999999998877544 778899999999999 5 66899999999999999999988
Q ss_pred EEE-eccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeec-------------------------CCCCeE
Q 001039 957 VAT-VGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLG-------------------------HTKWIR 1010 (1179)
Q Consensus 957 ~~~-~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~-------------------------~~~~I~ 1010 (1179)
+.. +.+|...|.+++|+ +++++++|+.|+.|++||+++++.+..+.. ....|.
T Consensus 233 ~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 311 (450)
T 2vdu_B 233 VDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVS 311 (450)
T ss_dssp EEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEE
T ss_pred eeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEE
Confidence 877 55899999999999 999999999999999999999998887753 234688
Q ss_pred EEEEc--CCEEEEEe-CCCcEEEEEc--cCC---eeeEEeecCCcCEEEEEEecCCCEEEEEeC------CCcEEEEEcC
Q 001039 1011 SIRMD--RDTVITGS-DDWTARMWSI--SRG---TCDAVLACHAGPVQCVEYSSSDRGIITGSS------DGLLRFWEND 1076 (1179)
Q Consensus 1011 sl~~~--~~~l~sgs-~dg~I~iwd~--~~~---~~~~~~~~h~~~V~~l~~spdg~~l~sgs~------Dg~I~iwd~~ 1076 (1179)
++++. ++++++++ .|+.|++||+ .++ +.+..+..| +.|.+++|+|++.++++++. +..|.+|.++
T Consensus 312 ~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 312 KIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp EEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence 88885 45888888 8999999999 666 677778877 89999999996544443333 4568999876
Q ss_pred C
Q 001039 1077 D 1077 (1179)
Q Consensus 1077 ~ 1077 (1179)
.
T Consensus 391 ~ 391 (450)
T 2vdu_B 391 L 391 (450)
T ss_dssp T
T ss_pred c
Confidence 5
No 117
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5.6e-26 Score=272.76 Aligned_cols=279 Identities=11% Similarity=0.122 Sum_probs=221.6
Q ss_pred ccccEEEEecCCCEEEEEeCCCcEEEEECCCCe---EEEEeecC------------------------------------
Q 001039 882 HTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQ---LLEELKGH------------------------------------ 922 (1179)
Q Consensus 882 h~~~v~~~s~d~~~l~sgs~dg~I~iwd~~t~~---~~~~~~~h------------------------------------ 922 (1179)
|.-...+++++|++++++ .++.|++||+.+|+ .+..+..+
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 333445679999966665 57899999999998 66665533
Q ss_pred ------------------CCcEEEEEEe-CCCEE-EEEEcCCeEEEEeCC--CCeEEEEec--cCCCcEEEEEEcCCCCE
Q 001039 923 ------------------DAQVSCVRML-SGERV-LTASHDGTVKMWDVR--TDTCVATVG--RCSSAVLCMEYDDSTGI 978 (1179)
Q Consensus 923 ------------------~~~V~~l~~s-~~~~l-~sgs~dg~I~iwd~~--~~~~~~~~~--~~~~~v~~l~~sp~~~~ 978 (1179)
.+.|++++|+ ++..+ ++|+.||.|++||+. +++.+..+. .+...|.+++|+|++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 163 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT 163 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence 3369999999 67775 888899999999999 888888775 56789999999999999
Q ss_pred EEEEeCCCeEEEEeCCCCceeE----EeecCCCCeEEEEEcCC-----EEEEEeCCCcEEEEEccCCeeeEE-eecCCcC
Q 001039 979 LAAGGRDAVANIWDIRAGRQMH----KFLGHTKWIRSIRMDRD-----TVITGSDDWTARMWSISRGTCDAV-LACHAGP 1048 (1179)
Q Consensus 979 l~sgs~dg~I~iwD~~~~~~~~----~~~~~~~~I~sl~~~~~-----~l~sgs~dg~I~iwd~~~~~~~~~-~~~h~~~ 1048 (1179)
|++|+.+|.+++||+.+++... .+.+|...|.+++|+++ ++++|+.|++|++||+++++.+.. +.+|.+.
T Consensus 164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~ 243 (450)
T 2vdu_B 164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHF 243 (450)
T ss_dssp EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSC
T ss_pred EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCc
Confidence 9999999999999999887554 67889999999999654 899999999999999999988877 5689999
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecc-------------------------cCceEE--EEecCC
Q 001039 1049 VQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTI-------------------------HSSAIL--SINAGD 1101 (1179)
Q Consensus 1049 V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~-------------------------h~~~i~--sis~dg 1101 (1179)
|++++|+ ++++|++|+.|+.|++||+.++. ++..+.. ....+. ++++++
T Consensus 244 v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 319 (450)
T 2vdu_B 244 VSSICCG-KDYLLLSAGGDDKIFAWDWKTGK---NLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNL 319 (450)
T ss_dssp EEEEEEC-STTEEEEEESSSEEEEEETTTCC---EEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSS
T ss_pred eEEEEEC-CCCEEEEEeCCCeEEEEECCCCc---EeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCC
Confidence 9999999 99999999999999999999854 3333321 123344 447899
Q ss_pred CEEEEEE-CCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeC------CCcEEEEE
Q 001039 1102 HWLGIGA-ADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGR------NGLLRLWE 1174 (1179)
Q Consensus 1102 ~~lasgs-~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~------Dg~I~vWd 1174 (1179)
+++++++ .|+.|++|++... .+. .+.....+..| +.|.+++|+|++.++++++. +..|.+|.
T Consensus 320 ~~l~~~~~~d~~i~iw~~~~~-------~~~---~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~ 388 (450)
T 2vdu_B 320 PFVAFFVEATKCIIILEMSEK-------QKG---DLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIE 388 (450)
T ss_dssp SEEEEEETTCSEEEEEEECSS-------STT---CEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEE
T ss_pred CEEEEEECCCCeEEEEEeccC-------CCC---ceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEE
Confidence 9999999 8999999999211 111 12455566667 88999999996544444343 55689997
Q ss_pred CC
Q 001039 1175 AT 1176 (1179)
Q Consensus 1175 v~ 1176 (1179)
++
T Consensus 389 ~~ 390 (450)
T 2vdu_B 389 YN 390 (450)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 118
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=9.9e-27 Score=268.61 Aligned_cols=263 Identities=8% Similarity=0.059 Sum_probs=211.1
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCC---------CCeEEEEe
Q 001039 890 NSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVR---------TDTCVATV 960 (1179)
Q Consensus 890 s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~---------~~~~~~~~ 960 (1179)
..++..+++|+.||+|++||+.+++.+..+. ...|.++.+++. +++++.|++|++|+.. +++.+...
T Consensus 45 ~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~ 120 (343)
T 3lrv_A 45 YYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSKTNKVLREI 120 (343)
T ss_dssp SEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred cCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeecCCcceeEEe
Confidence 4678899999999999999999999888776 456677777765 9999999999999665 55545444
Q ss_pred c-cCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEeCCCCceeEEeec-CCCCeEEEEEcC--CEEEEEeCCCcEEEEEcc
Q 001039 961 G-RCSSAVLCMEYDD--STGILAAGGRDAVANIWDIRAGRQMHKFLG-HTKWIRSIRMDR--DTVITGSDDWTARMWSIS 1034 (1179)
Q Consensus 961 ~-~~~~~v~~l~~sp--~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~-~~~~I~sl~~~~--~~l~sgs~dg~I~iwd~~ 1034 (1179)
. .|...|.+++|+| +++++++|+.||.|++||+++++....... +...+.+++|++ .++++|+.||.|++||++
T Consensus 121 ~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~ 200 (343)
T 3lrv_A 121 EVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLS 200 (343)
T ss_dssp ECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESS
T ss_pred ecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence 3 5668899999999 999999999999999999999998776644 455899999965 599999999999999999
Q ss_pred CCeee-EEeec-CCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCc----eEEEEecCCCEEEEEE
Q 001039 1035 RGTCD-AVLAC-HAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSS----AILSINAGDHWLGIGA 1108 (1179)
Q Consensus 1035 ~~~~~-~~~~~-h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~----~i~sis~dg~~lasgs 1108 (1179)
+++.. ..+.. |.+.|++++|+|+|.+|++++ |+.|++||+++......+..+..|.. ...+++|+|++|++|+
T Consensus 201 ~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s 279 (343)
T 3lrv_A 201 SPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYS 279 (343)
T ss_dssp CTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEE
T ss_pred CCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEec
Confidence 99887 78887 999999999999999999999 55999999998654333333222322 2467799999999999
Q ss_pred C-CCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcC---CCCEEEEEeCCCcEEEEECC
Q 001039 1109 A-DNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDL---ERKRICSGGRNGLLRLWEAT 1176 (1179)
Q Consensus 1109 ~-Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fsp---dg~~Lasgs~Dg~I~vWdv~ 1176 (1179)
. |+.|++|++.... ..|.. ..+..++|++ +++.+++++.||.+.+|-..
T Consensus 280 ~~d~~i~v~~~~~~~-----------~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 280 NESNSLTIYKFDKKT-----------KNWTK--------DEESALCLQSDTADFTDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp TTTTEEEEEEECTTT-----------CSEEE--------EEEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred CCCCcEEEEEEcccc-----------cceEe--------cCceeEecCccccccceeEEEecCCceEEEEec
Confidence 8 9999999986321 12332 4678888988 88999999999999988543
No 119
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=5e-27 Score=276.69 Aligned_cols=249 Identities=11% Similarity=0.082 Sum_probs=178.6
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCeEEE-----EeecCCCcEEEEEEe---------CCCEEEEEEcCCeEEEEeCCC
Q 001039 888 AINSDRGKVVSGSDDQSVLVWDKQTSQLLE-----ELKGHDAQVSCVRML---------SGERVLTASHDGTVKMWDVRT 953 (1179)
Q Consensus 888 ~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~-----~~~~h~~~V~~l~~s---------~~~~l~sgs~dg~I~iwd~~~ 953 (1179)
++++++..+++|+.|++|++||..+++... .+.+|.+.|++++|+ ++++|++|+.|++|++||+++
T Consensus 96 ~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~ 175 (393)
T 4gq1_A 96 SSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD 175 (393)
T ss_dssp -CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET
T ss_pred ecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCC
Confidence 346778899999999999999999886543 357899999999997 467899999999999999999
Q ss_pred CeEEEEeccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEE-------------------------eecCCC
Q 001039 954 DTCVATVGRCSSAVLCMEYDDST-GILAAGGRDAVANIWDIRAGRQMHK-------------------------FLGHTK 1007 (1179)
Q Consensus 954 ~~~~~~~~~~~~~v~~l~~sp~~-~~l~sgs~dg~I~iwD~~~~~~~~~-------------------------~~~~~~ 1007 (1179)
+.....+..|...+.+++|+|++ .++++|+.||.|++||+++++.... ..+|..
T Consensus 176 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 255 (393)
T 4gq1_A 176 EGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIAS 255 (393)
T ss_dssp TEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSS
T ss_pred CceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccc
Confidence 98888888899999999999987 4799999999999999998764332 135677
Q ss_pred CeEEEEE---cCCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEE
Q 001039 1008 WIRSIRM---DRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCV 1084 (1179)
Q Consensus 1008 ~I~sl~~---~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~ 1084 (1179)
.+.++.| ++..+++++.|+++++||+..++....+..|...+..+.+.|+++.+.......
T Consensus 256 ~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 319 (393)
T 4gq1_A 256 SLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLL---------------- 319 (393)
T ss_dssp SCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSS----------------
T ss_pred cceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcce----------------
Confidence 7888887 456999999999999999999988888888888887777777654332111100
Q ss_pred EeecccCceEEEEecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEE
Q 001039 1085 KNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSG 1164 (1179)
Q Consensus 1085 ~~~~~h~~~i~sis~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasg 1164 (1179)
..+..-..++.++++|+.||+|++||+.++ .......+|...|++++|||||++||++
T Consensus 320 -------~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~---------------~~~~~~~~~~~~V~svafspdG~~LA~a 377 (393)
T 4gq1_A 320 -------GACPHPRYMDYFATAHSQHGLIQLINTYEK---------------DSNSIPIQLGMPIVDFCWHQDGSHLAIA 377 (393)
T ss_dssp -------CCEECSSCTTEEEEEETTTTEEEEEETTCT---------------TCCEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred -------eEEEccCCCCEEEEEECCCCEEEEEECCCC---------------cEEEEecCCCCcEEEEEEcCCCCEEEEE
Confidence 001111235667888899999999999743 2334455788899999999999999999
Q ss_pred eCCCcEEEEEC
Q 001039 1165 GRNGLLRLWEA 1175 (1179)
Q Consensus 1165 s~Dg~I~vWdv 1175 (1179)
++|| +.+|++
T Consensus 378 s~~G-v~lvrL 387 (393)
T 4gq1_A 378 TEGS-VLLTRL 387 (393)
T ss_dssp ESSE-EEEEEE
T ss_pred eCCC-eEEEEE
Confidence 9777 555554
No 120
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.95 E-value=1.1e-24 Score=255.64 Aligned_cols=261 Identities=12% Similarity=0.143 Sum_probs=213.1
Q ss_pred CEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEE--EEecCCCEE-EEEeCCCcEEEEECCCCeEEEEeecCCCcEEE
Q 001039 852 GFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKV-VSGSDDQSVLVWDKQTSQLLEELKGHDAQVSC 928 (1179)
Q Consensus 852 ~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~--~~s~d~~~l-~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~ 928 (1179)
.++++++.|++|++||+. ..+....+.+|.. +. +++++++++ ++++.|++|++||..+++.+..+..+. .+.+
T Consensus 3 ~l~vs~~~d~~v~v~d~~--~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~ 78 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVT--SNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQG 78 (391)
T ss_dssp EEEEEETTTTEEEEEETT--TTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEE
T ss_pred EEEEEcCCCCEEEEEECC--CCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccc
Confidence 467899999999999976 4566677777755 44 568999987 567789999999999999999888665 8999
Q ss_pred EEEe-CCCEEEEE-EcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCceeEEeecC
Q 001039 929 VRML-SGERVLTA-SHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGIL-AAGGRDAVANIWDIRAGRQMHKFLGH 1005 (1179)
Q Consensus 929 l~~s-~~~~l~sg-s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l-~sgs~dg~I~iwD~~~~~~~~~~~~~ 1005 (1179)
++|+ +++.++++ +.++.|++||+.+++.+..+.. ...+.+++|+|+++.+ ++++.++.|++||+++++.+..+..+
T Consensus 79 ~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~ 157 (391)
T 1l0q_A 79 VAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG 157 (391)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred eEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC
Confidence 9999 57766544 4679999999999998888754 4578999999999977 67778999999999999988888665
Q ss_pred CCCeEEEEEcCC--EE-EEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEe---CCCcEEEEEcCCCC
Q 001039 1006 TKWIRSIRMDRD--TV-ITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGS---SDGLLRFWENDDAG 1079 (1179)
Q Consensus 1006 ~~~I~sl~~~~~--~l-~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs---~Dg~I~iwd~~~~~ 1079 (1179)
..+.+++++++ .+ ++++.++.|++||+++++....+. +...+.+++|+|+|+++++++ .++.|++||+.+
T Consensus 158 -~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~-- 233 (391)
T 1l0q_A 158 -RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT-- 233 (391)
T ss_dssp -SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT--
T ss_pred -CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCC--
Confidence 45688888644 55 677889999999999998887776 566899999999999999888 689999999988
Q ss_pred cceEEEeecccCce-EEEEecCCCEE-EEEECCCcEEEEeCCCCC
Q 001039 1080 GIKCVKNVTIHSSA-ILSINAGDHWL-GIGAADNSMSLFHRPQER 1122 (1179)
Q Consensus 1080 ~~~~~~~~~~h~~~-i~sis~dg~~l-asgs~Dg~I~iwd~~~~~ 1122 (1179)
.+.+..+..+... ..+++++++++ ++++.|+.|++||+.+.+
T Consensus 234 -~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~ 277 (391)
T 1l0q_A 234 -NKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNT 277 (391)
T ss_dssp -TEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred -CeEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCc
Confidence 3555556555543 24568999877 566889999999998543
No 121
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=9.9e-25 Score=259.77 Aligned_cols=280 Identities=10% Similarity=0.063 Sum_probs=226.3
Q ss_pred ceEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEE-----EeccccccEEE--Eec
Q 001039 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRA-----TLKGHTRTVRA--INS 891 (1179)
Q Consensus 819 ~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~-----~l~~h~~~v~~--~s~ 891 (1179)
.+..+..+. .+.+++|+ |++.++++++.|++|++||+. +.+... .+.+|...+.+ +++
T Consensus 115 ~~~~~~~~~-~~~~~~~s------------~~~~~~~~~~~~~~i~~~d~~--~g~~~~~~~~~~~~~~~~~v~~~~~~~ 179 (433)
T 3bws_A 115 FISRFKTGF-QPKSVRFI------------DNTRLAIPLLEDEGMDVLDIN--SGQTVRLSPPEKYKKKLGFVETISIPE 179 (433)
T ss_dssp EEEEEECSS-CBCCCEES------------SSSEEEEEBTTSSSEEEEETT--TCCEEEECCCHHHHTTCCEEEEEEEGG
T ss_pred EEEEEcCCC-CceEEEEe------------CCCeEEEEeCCCCeEEEEECC--CCeEeeecCcccccccCCceeEEEEcC
Confidence 344455544 35578876 777888888889999999976 333334 34578888875 478
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEE-EEcCCeEEEEeCCCCeEEEEeccCCCcEEE
Q 001039 892 DRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLT-ASHDGTVKMWDVRTDTCVATVGRCSSAVLC 969 (1179)
Q Consensus 892 d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~s-gs~dg~I~iwd~~~~~~~~~~~~~~~~v~~ 969 (1179)
++..+++++.|+.|++||+.+++.+..+..|...+.+++|+ ++..+++ ++.|+.|++||+++++.+..+.. ...+.+
T Consensus 180 ~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~ 258 (433)
T 3bws_A 180 HNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRG 258 (433)
T ss_dssp GTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEE
T ss_pred CCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceE
Confidence 89999999999999999999999999999999999999999 5666754 44799999999999998888765 456999
Q ss_pred EEEcCCCCEEEEEe--------CCCeEEEEeCCCCceeEEeecCCCCeEEEEEcCC---EEEEEeCCCcEEEEEccCCee
Q 001039 970 MEYDDSTGILAAGG--------RDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD---TVITGSDDWTARMWSISRGTC 1038 (1179)
Q Consensus 970 l~~sp~~~~l~sgs--------~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~---~l~sgs~dg~I~iwd~~~~~~ 1038 (1179)
++|+|+++.+++++ .||.|++||+++++.+..+ .+...+.+++|+++ .+++++.|+.|++||+.+++.
T Consensus 259 ~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~ 337 (433)
T 3bws_A 259 LLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKV 337 (433)
T ss_dssp EEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEE
T ss_pred EEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcE
Confidence 99999999999888 4889999999999877665 45557888999653 557778999999999999988
Q ss_pred eEEeecCCcCEEEEEEecCCCEEEEEeC---------------CCcEEEEEcCCCCcceEEEeecccCc-eEEEEecCCC
Q 001039 1039 DAVLACHAGPVQCVEYSSSDRGIITGSS---------------DGLLRFWENDDAGGIKCVKNVTIHSS-AILSINAGDH 1102 (1179)
Q Consensus 1039 ~~~~~~h~~~V~~l~~spdg~~l~sgs~---------------Dg~I~iwd~~~~~~~~~~~~~~~h~~-~i~sis~dg~ 1102 (1179)
...+. +...+.+++|+|+|+++++++. ||.|++||..+ .+.+..+..+.. ...+++|+|+
T Consensus 338 ~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~---~~~~~~~~~~~~~~~~~~s~dg~ 413 (433)
T 3bws_A 338 QKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT---DTVKEFWEAGNQPTGLDVSPDNR 413 (433)
T ss_dssp EEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT---TEEEEEEECSSSEEEEEECTTSC
T ss_pred EEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCC---CcEEEEecCCCCCceEEEcCCCC
Confidence 88776 7788999999999999988876 57999999988 345555544332 2345689999
Q ss_pred EEEEEEC-CCcEEEEeCC
Q 001039 1103 WLGIGAA-DNSMSLFHRP 1119 (1179)
Q Consensus 1103 ~lasgs~-Dg~I~iwd~~ 1119 (1179)
+|++++. |+.|++|++.
T Consensus 414 ~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 414 YLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEEEETTTTEEEEEEET
T ss_pred EEEEEECCCCeEEEEEec
Confidence 9998875 9999999985
No 122
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=4.1e-26 Score=263.40 Aligned_cols=270 Identities=11% Similarity=0.107 Sum_probs=208.2
Q ss_pred EEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceeccccccCCCC
Q 001039 775 MFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAG 852 (1179)
Q Consensus 775 ~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~ 852 (1179)
.+.+|++.+++|+.| |++||+.++. .+..+. .+.|.++.|+ |+
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~-------------------~~~~~~--~~~v~~~~~~------------~~-- 87 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSK-------------------TITTIT--TPNPRTGGEH------------PA-- 87 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSS-------------------CEEEEE--EECCCTTCCC------------CS--
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCc-------------------EEEEEe--cCCceeeeeC------------Cc--
Confidence 556678888888888 8888887766 344444 4556666665 44
Q ss_pred EEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEee-cCCCcEEEEEE
Q 001039 853 FFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELK-GHDAQVSCVRM 931 (1179)
Q Consensus 853 ~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~-~h~~~V~~l~~ 931 (1179)
+++|+.|++|++|+.. + .+.+||..+++.+.... +|.+.|.+++|
T Consensus 88 -~~s~s~D~~i~~w~~~--~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 133 (343)
T 3lrv_A 88 -IISRGPCNRLLLLYPG--N-------------------------------QITILDSKTNKVLREIEVDSANEIIYMYG 133 (343)
T ss_dssp -EEEECSTTEEEEEETT--T-------------------------------EEEEEETTTCCEEEEEECCCSSCEEEEEC
T ss_pred -eEEecCCCeEEEEEcc--C-------------------------------ceEEeecCCcceeEEeecCCCCCEEEEEc
Confidence 8888888888888854 1 46678888888776665 77789999999
Q ss_pred eC---CCEEEEEEcCCeEEEEeCCCCeEEEEec-cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee-EEeec-C
Q 001039 932 LS---GERVLTASHDGTVKMWDVRTDTCVATVG-RCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQM-HKFLG-H 1005 (1179)
Q Consensus 932 s~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~-~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~-~~~~~-~ 1005 (1179)
++ ++++++|+.||+|++||+++++...... .+...+.+++|+|++.++++|+.||.|++||+++++.+ ..+.+ |
T Consensus 134 ~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h 213 (343)
T 3lrv_A 134 HNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDE 213 (343)
T ss_dssp CC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCT
T ss_pred CCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccC
Confidence 85 6789999999999999999999877664 45568999999999999999999999999999999988 78888 9
Q ss_pred CCCeEEEEEcCC--EEEEEeCCCcEEEEEccCCeeeEEeec---CCcCEE--EEEEecCCCEEEEEeC-CCcEEEEEcCC
Q 001039 1006 TKWIRSIRMDRD--TVITGSDDWTARMWSISRGTCDAVLAC---HAGPVQ--CVEYSSSDRGIITGSS-DGLLRFWENDD 1077 (1179)
Q Consensus 1006 ~~~I~sl~~~~~--~l~sgs~dg~I~iwd~~~~~~~~~~~~---h~~~V~--~l~~spdg~~l~sgs~-Dg~I~iwd~~~ 1077 (1179)
...|++++|+++ ++++++ |+.|++||+++++....+.. |...+. +++|+|+|++|++++. |+.|++|++..
T Consensus 214 ~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~ 292 (343)
T 3lrv_A 214 EAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDK 292 (343)
T ss_dssp TSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred CCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcc
Confidence 999999999654 899998 55999999999876655443 334443 6999999999999998 99999999976
Q ss_pred CCcceEEEeecccCceEEEEec---CCCEEEEEECCCcEEEEeCC
Q 001039 1078 AGGIKCVKNVTIHSSAILSINA---GDHWLGIGAADNSMSLFHRP 1119 (1179)
Q Consensus 1078 ~~~~~~~~~~~~h~~~i~sis~---dg~~lasgs~Dg~I~iwd~~ 1119 (1179)
....... .......+.+ ++..+++++.||.+.++-..
T Consensus 293 ~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 293 KTKNWTK-----DEESALCLQSDTADFTDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp TTCSEEE-----EEEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred cccceEe-----cCceeEecCccccccceeEEEecCCceEEEEec
Confidence 4322211 1112233345 77899999999999988643
No 123
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.94 E-value=2.6e-24 Score=252.46 Aligned_cols=297 Identities=10% Similarity=0.045 Sum_probs=231.8
Q ss_pred CceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceeccccccCCCCEE-EEE
Q 001039 781 SSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFF-ISG 857 (1179)
Q Consensus 781 ~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~L-asg 857 (1179)
..+++++.+ |++||+.+++ .++.+.+|.. +.+++|+ ++++++ +++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~-------------------~~~~~~~~~~-~~~~~~s------------~dg~~l~~~~ 50 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNK-------------------VTATIPVGSN-PMGAVIS------------PDGTKVYVAN 50 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTE-------------------EEEEEECSSS-EEEEEEC------------TTSSEEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCe-------------------EEEEeecCCC-cceEEEC------------CCCCEEEEEC
Confidence 356667666 9999999876 6777887765 8999998 889876 677
Q ss_pred eCCCcEEEEcCCCCCceeEEEeccccccEE--EEecCCCEEEEEe-CCCcEEEEECCCCeEEEEeecCCCcEEEEEEe-C
Q 001039 858 STDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKVVSGS-DDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-S 933 (1179)
Q Consensus 858 s~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~--~~s~d~~~l~sgs-~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~ 933 (1179)
+.|++|++||+. +.+....+..+. .+. +++++++++++++ .++.|++||+.+++.+..+..+ ..+.+++|+ +
T Consensus 51 ~~d~~i~v~d~~--~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~d 126 (391)
T 1l0q_A 51 AHSNDVSIIDTA--TNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPD 126 (391)
T ss_dssp GGGTEEEEEETT--TTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTT
T ss_pred CCCCeEEEEECC--CCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCC
Confidence 789999999976 455556666554 555 5689999886554 6799999999999998888755 468999999 5
Q ss_pred CCEE-EEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCceeEEeecCCCCeEE
Q 001039 934 GERV-LTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGIL-AAGGRDAVANIWDIRAGRQMHKFLGHTKWIRS 1011 (1179)
Q Consensus 934 ~~~l-~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l-~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~s 1011 (1179)
++.+ ++++.|+.|++||+.+++.+..+..+ ..+.+++|+|+++.+ ++++.++.|++||+++++.+..+. +...+.+
T Consensus 127 g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~ 204 (391)
T 1l0q_A 127 GKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSG 204 (391)
T ss_dssp SSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEE
T ss_pred CCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccc
Confidence 6666 67788999999999999988887654 567999999999987 567788999999999998877764 4567888
Q ss_pred EEEcC--CEEEEEe---CCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEE-EEEeCCCcEEEEEcCCCCcceEEE
Q 001039 1012 IRMDR--DTVITGS---DDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGI-ITGSSDGLLRFWENDDAGGIKCVK 1085 (1179)
Q Consensus 1012 l~~~~--~~l~sgs---~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l-~sgs~Dg~I~iwd~~~~~~~~~~~ 1085 (1179)
+++++ +.+++++ .++.|++||+.+++.+..+..|. .+.+++|+|+|+++ ++++.|+.|++||+.+ .+.+.
T Consensus 205 ~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~---~~~~~ 280 (391)
T 1l0q_A 205 IAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTAT---NTITA 280 (391)
T ss_dssp EEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTT---TEEEE
T ss_pred eEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCC---CcEEE
Confidence 99964 4777777 68999999999999988888654 57899999999988 5678899999999998 34454
Q ss_pred eecccCceE-----------------EEEecC--------C--CEEEEEECCCcEEEEeCC
Q 001039 1086 NVTIHSSAI-----------------LSINAG--------D--HWLGIGAADNSMSLFHRP 1119 (1179)
Q Consensus 1086 ~~~~h~~~i-----------------~sis~d--------g--~~lasgs~Dg~I~iwd~~ 1119 (1179)
.+..+..+. ..++.+ . ..+...+.|...++||..
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~ 341 (391)
T 1l0q_A 281 TMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFG 341 (391)
T ss_dssp EEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECS
T ss_pred EEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECC
Confidence 444443321 112211 1 345566678899999986
No 124
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.4e-26 Score=292.61 Aligned_cols=252 Identities=18% Similarity=0.288 Sum_probs=213.8
Q ss_pred EEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCC--CCeEEEEeccCCCcEEEEEEcCC--CCEEEEEeCCCeEEE
Q 001039 916 LEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVR--TDTCVATVGRCSSAVLCMEYDDS--TGILAAGGRDAVANI 990 (1179)
Q Consensus 916 ~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~--~~~~~~~~~~~~~~v~~l~~sp~--~~~l~sgs~dg~I~i 990 (1179)
+..+.+|.+.|++++|+ +++++++|+.||+|++||+. +++....+.+|.+.|.+++|+++ ++++++|+.||.|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 34678999999999999 68899999999999999998 55677888899999999999988 999999999999999
Q ss_pred EeCCCCc--eeEEeecCCCCeEEEEEc----CCEEEEEeCCCcEEEEEccCC--eeeEEeecCCcCEEEEEEec------
Q 001039 991 WDIRAGR--QMHKFLGHTKWIRSIRMD----RDTVITGSDDWTARMWSISRG--TCDAVLACHAGPVQCVEYSS------ 1056 (1179)
Q Consensus 991 wD~~~~~--~~~~~~~~~~~I~sl~~~----~~~l~sgs~dg~I~iwd~~~~--~~~~~~~~h~~~V~~l~~sp------ 1056 (1179)
||+++++ .+..+.+|...|.+++|+ ++.+++|+.||.|++||++++ .....+.+|...|++++|+|
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~ 161 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC----
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccc
Confidence 9999987 677788999999999995 559999999999999999887 34556778999999999999
Q ss_pred -------CCCEEEEEeCCCcEEEEEcCCCCcc-eEEEeecccCceEEEE--ecC---CCEEEEEECCCcEEEEeCCCCCc
Q 001039 1057 -------SDRGIITGSSDGLLRFWENDDAGGI-KCVKNVTIHSSAILSI--NAG---DHWLGIGAADNSMSLFHRPQERL 1123 (1179)
Q Consensus 1057 -------dg~~l~sgs~Dg~I~iwd~~~~~~~-~~~~~~~~h~~~i~si--s~d---g~~lasgs~Dg~I~iwd~~~~~~ 1123 (1179)
+++++++|+.||.|++||+.++... .....+.+|...|.++ +|+ ++++++|+.||.|++||+.....
T Consensus 162 ~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~ 241 (753)
T 3jro_A 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG 241 (753)
T ss_dssp -----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSS
T ss_pred cccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCC
Confidence 5899999999999999999875432 5667788899998776 688 89999999999999999974311
Q ss_pred CcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001039 1124 GGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATI 1177 (1179)
Q Consensus 1124 ~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~t 1177 (1179)
. .........+|.+.|++++|+|+|++|++|+.||.|++|++.+
T Consensus 242 ---------~-~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 242 ---------P-WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp ---------C-CBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred ---------c-ceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 0 0012233457889999999999999999999999999999985
No 125
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.94 E-value=2.7e-26 Score=270.41 Aligned_cols=251 Identities=9% Similarity=0.065 Sum_probs=181.8
Q ss_pred cccCceEEEEeecccc--------eeccccccCCCCEEEEEeCCCcEEEEcCCCCCc---eeEEEeccccccEEEE--ec
Q 001039 825 GHAGAITALHCVTKRE--------VWDLVGDREDAGFFISGSTDCLVKIWDPSLRGS---ELRATLKGHTRTVRAI--NS 891 (1179)
Q Consensus 825 gH~~~V~~v~~s~~~~--------~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~---~~~~~l~~h~~~v~~~--s~ 891 (1179)
.|...+.++.|++... ......+++++.+|++|+.|++|++||...... .....+.||.+.|.++ +|
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p 146 (393)
T 4gq1_A 67 QTGLPTLHLSFSSSCSYSENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIAD 146 (393)
T ss_dssp ECSSCEEEEEECTTCEEECC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEE
T ss_pred ecCCCeeeEeecCCccccccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEcc
Confidence 3455666666654321 112334457788999999999999999763322 1233578999999965 54
Q ss_pred --------CCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEeC-C-CEEEEEEcCCeEEEEeCCCCeEEEEe-
Q 001039 892 --------DRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLS-G-ERVLTASHDGTVKMWDVRTDTCVATV- 960 (1179)
Q Consensus 892 --------d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s~-~-~~l~sgs~dg~I~iwd~~~~~~~~~~- 960 (1179)
|+++|++|+.|++|+|||+.++..+..+.+|...+.+++|++ + .++++|+.||+|++||+++++.....
T Consensus 147 ~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~ 226 (393)
T 4gq1_A 147 VYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENS 226 (393)
T ss_dssp EECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC------
T ss_pred ccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCccccccc
Confidence 789999999999999999999988888888999999999994 3 47999999999999999887643322
Q ss_pred ------------------------ccCCCcEEEEEEc-CCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEc
Q 001039 961 ------------------------GRCSSAVLCMEYD-DSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMD 1015 (1179)
Q Consensus 961 ------------------------~~~~~~v~~l~~s-p~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~ 1015 (1179)
.+|...+.++.|+ ++++.+++++.|+.+++||+.+++....+..|...+..+.+.
T Consensus 227 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~ 306 (393)
T 4gq1_A 227 QTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLL 306 (393)
T ss_dssp ----CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCS
T ss_pred ccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEc
Confidence 2456678888886 799999999999999999999887776666555444433221
Q ss_pred ----------------------CCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEE
Q 001039 1016 ----------------------RDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFW 1073 (1179)
Q Consensus 1016 ----------------------~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iw 1073 (1179)
+.++++|+.||+|++||+.+++.......|..+|++++|+|||++||+++.+| +.+|
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lv 385 (393)
T 4gq1_A 307 PNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLT 385 (393)
T ss_dssp CSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEE
T ss_pred cccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEE
Confidence 12677888999999999999999888888999999999999999999998777 6666
Q ss_pred EcC
Q 001039 1074 END 1076 (1179)
Q Consensus 1074 d~~ 1076 (1179)
.+.
T Consensus 386 rL~ 388 (393)
T 4gq1_A 386 RLM 388 (393)
T ss_dssp EEG
T ss_pred EEe
Confidence 654
No 126
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.94 E-value=6.2e-26 Score=270.70 Aligned_cols=271 Identities=14% Similarity=0.245 Sum_probs=214.3
Q ss_pred EEEEECCCCeE-EEEeecCCCcEEEEEEeC--CCEEEEEEcCCeEEEEeCCC----------CeEEEEeccCCCcEEEEE
Q 001039 905 VLVWDKQTSQL-LEELKGHDAQVSCVRMLS--GERVLTASHDGTVKMWDVRT----------DTCVATVGRCSSAVLCME 971 (1179)
Q Consensus 905 I~iwd~~t~~~-~~~~~~h~~~V~~l~~s~--~~~l~sgs~dg~I~iwd~~~----------~~~~~~~~~~~~~v~~l~ 971 (1179)
+..+...+++. ......|.+.|++++|++ +.++++++.||.|++||+.+ .+....+.+|...+.+++
T Consensus 109 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 188 (430)
T 2xyi_A 109 FGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLS 188 (430)
T ss_dssp ---------CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEE
T ss_pred cccccCCCCceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEE
Confidence 33343344433 244567899999999995 46899999999999999986 567788889999999999
Q ss_pred EcCCCC-EEEEEeCCCeEEEEeCCCCce-------eEEeecCCCCeEEEEEcC---CEEEEEeCCCcEEEEEccCC---e
Q 001039 972 YDDSTG-ILAAGGRDAVANIWDIRAGRQ-------MHKFLGHTKWIRSIRMDR---DTVITGSDDWTARMWSISRG---T 1037 (1179)
Q Consensus 972 ~sp~~~-~l~sgs~dg~I~iwD~~~~~~-------~~~~~~~~~~I~sl~~~~---~~l~sgs~dg~I~iwd~~~~---~ 1037 (1179)
|+|++. ++++|+.||.|++||+.++.. ...+.+|...|.+++|++ ..+++++.||.|++||++++ +
T Consensus 189 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~ 268 (430)
T 2xyi_A 189 WNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK 268 (430)
T ss_dssp ECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSS
T ss_pred eCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCc
Confidence 999988 999999999999999987432 456778999999999965 48999999999999999987 5
Q ss_pred eeEEeecCCcCEEEEEEecCCC-EEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEE--ecCC-CEEEEEECCCcE
Q 001039 1038 CDAVLACHAGPVQCVEYSSSDR-GIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSI--NAGD-HWLGIGAADNSM 1113 (1179)
Q Consensus 1038 ~~~~~~~h~~~V~~l~~spdg~-~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~si--s~dg-~~lasgs~Dg~I 1113 (1179)
....+..|...|++++|+|+++ .+++|+.||.|++||+++.. ..+..+..|...|.++ +|++ .++++|+.||.|
T Consensus 269 ~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~--~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i 346 (430)
T 2xyi_A 269 PSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK--LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 346 (430)
T ss_dssp CSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT--SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCC
T ss_pred ceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC--CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcE
Confidence 7778889999999999999987 68899999999999998743 3455666788888766 6777 579999999999
Q ss_pred EEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCC-EEEEEeCCCcEEEEECCCC
Q 001039 1114 SLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERK-RICSGGRNGLLRLWEATIN 1178 (1179)
Q Consensus 1114 ~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~-~Lasgs~Dg~I~vWdv~tg 1178 (1179)
++||+........... ..-....++....+|...|++++|+|+++ +|++++.||.|++|++.++
T Consensus 347 ~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 347 HVWDLSKIGEEQSTED-AEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EEEEGGGTTCCCCHHH-HHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EEEeCCCCccccCccc-cccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 9999974211000000 00000145667789999999999999999 8999999999999998753
No 127
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.94 E-value=7.3e-25 Score=244.73 Aligned_cols=260 Identities=11% Similarity=0.096 Sum_probs=187.2
Q ss_pred EEEEEeCCCcEEEEECCCC---eEEEEeecCCCcEEEEEEeCC--CEEEEEEcC---CeEEEEeCCCC----eEEEEecc
Q 001039 895 KVVSGSDDQSVLVWDKQTS---QLLEELKGHDAQVSCVRMLSG--ERVLTASHD---GTVKMWDVRTD----TCVATVGR 962 (1179)
Q Consensus 895 ~l~sgs~dg~I~iwd~~t~---~~~~~~~~h~~~V~~l~~s~~--~~l~sgs~d---g~I~iwd~~~~----~~~~~~~~ 962 (1179)
.++++++ ..|++|+..++ +.+.++..|+.+|..+.+.++ +.+.++-.+ +.|+..-+... .......+
T Consensus 56 ~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g 134 (356)
T 2w18_A 56 CIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSG 134 (356)
T ss_dssp EEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEE
T ss_pred EEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCC
Confidence 4666665 68999999999 899999999999999998852 222222111 11111111111 11111122
Q ss_pred CCCcEEEEEEcCCCCEEEEEe--CCCeEEEEeC-CCCceeEEeecCCCCeEEEEEc-----CCEEEEEeCCCcEEEEEcc
Q 001039 963 CSSAVLCMEYDDSTGILAAGG--RDAVANIWDI-RAGRQMHKFLGHTKWIRSIRMD-----RDTVITGSDDWTARMWSIS 1034 (1179)
Q Consensus 963 ~~~~v~~l~~sp~~~~l~sgs--~dg~I~iwD~-~~~~~~~~~~~~~~~I~sl~~~-----~~~l~sgs~dg~I~iwd~~ 1034 (1179)
+...+.++ ++++.+.+++ .|+.|++|++ .+|+.+..+.+|...+..++|+ ++.+++|+.|++|++||++
T Consensus 135 ~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~ 211 (356)
T 2w18_A 135 NIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLK 211 (356)
T ss_dssp EEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETT
T ss_pred CeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECC
Confidence 33334443 5666555543 5999999999 4588888888888877776664 3699999999999999999
Q ss_pred CCeeeEEeecCC---cCEEEEEEecCCCEE------------EEEeCCCcEEEEEcCCCCcceEEEee-----cccCceE
Q 001039 1035 RGTCDAVLACHA---GPVQCVEYSSSDRGI------------ITGSSDGLLRFWENDDAGGIKCVKNV-----TIHSSAI 1094 (1179)
Q Consensus 1035 ~~~~~~~~~~h~---~~V~~l~~spdg~~l------------~sgs~Dg~I~iwd~~~~~~~~~~~~~-----~~h~~~i 1094 (1179)
+|++++++.+|. ..+.+++|+|+|+++ ++|+.|++|++||..++ +.+..+ .+|....
T Consensus 212 TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tg---k~l~v~~~~~p~Gh~~~~ 288 (356)
T 2w18_A 212 TGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTT---LSVGVMLYCLPPGQAGRF 288 (356)
T ss_dssp TCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTT---EEEEEEEECCCTTCCCCE
T ss_pred CCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCC---EEEEEEEeeccCCCccee
Confidence 999999998654 367788999999986 56888999999999884 443332 4676666
Q ss_pred EEEecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEE-EEEEcCCCCEEEEEeCCCcEEEE
Q 001039 1095 LSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVR-CIASDLERKRICSGGRNGLLRLW 1173 (1179)
Q Consensus 1095 ~sis~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~-~v~fspdg~~Lasgs~Dg~I~vW 1173 (1179)
.+.+.++.++|+|+.||+|+|||+.+ | +++.++.+|...+. +++|||||++|+||+.|++|+||
T Consensus 289 lsg~~sg~~lASgS~DgTIkIWDl~t---------G------k~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklW 353 (356)
T 2w18_A 289 LEGDVKDHCAAAILTSGTIAIWDLLL---------G------QCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVY 353 (356)
T ss_dssp EEEEEETTEEEEEETTSCEEEEETTT---------C------SEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEE
T ss_pred EccccCCCEEEEEcCCCcEEEEECCC---------C------cEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEe
Confidence 66667789999999999999999984 3 67778888887655 68999999999999999999999
Q ss_pred ECC
Q 001039 1174 EAT 1176 (1179)
Q Consensus 1174 dv~ 1176 (1179)
|+.
T Consensus 354 d~~ 356 (356)
T 2w18_A 354 HYS 356 (356)
T ss_dssp EEC
T ss_pred cCC
Confidence 963
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.93 E-value=3.2e-23 Score=253.81 Aligned_cols=315 Identities=9% Similarity=0.055 Sum_probs=243.3
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCCceeEEEec-cccccEEEEecCCCEEEEEeCCCcEEEEEC--CCCeEEEEeecCCCc
Q 001039 849 EDAGFFISGSTDCLVKIWDPSLRGSELRATLK-GHTRTVRAINSDRGKVVSGSDDQSVLVWDK--QTSQLLEELKGHDAQ 925 (1179)
Q Consensus 849 ~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~-~h~~~v~~~s~d~~~l~sgs~dg~I~iwd~--~t~~~~~~~~~h~~~ 925 (1179)
+++.++++++.|++|.+||.. ..++...+. ++.....+++|||+++++++.|++|.+||+ .+++.+.++.. ...
T Consensus 147 p~~~~~vs~~~d~~V~v~D~~--t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~ 223 (543)
T 1nir_A 147 LPNLFSVTLRDAGQIALVDGD--SKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIE 223 (543)
T ss_dssp GGGEEEEEEGGGTEEEEEETT--TCCEEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSE
T ss_pred CCCEEEEEEcCCCeEEEEECC--CceEEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCC
Confidence 788899999999999999976 455667776 454233357999999999999999999999 88999988884 556
Q ss_pred EEEEEEeC-----CCEEEEEE-cCCeEEEEeCCCCeEEEEeccC-----------CCcEEEEEEcCCCCE-EEEEeCCCe
Q 001039 926 VSCVRMLS-----GERVLTAS-HDGTVKMWDVRTDTCVATVGRC-----------SSAVLCMEYDDSTGI-LAAGGRDAV 987 (1179)
Q Consensus 926 V~~l~~s~-----~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~-----------~~~v~~l~~sp~~~~-l~sgs~dg~ 987 (1179)
+..++|++ ++++++++ .+++|.+||..+++++..+..+ ...+.++.+++++.. +++...++.
T Consensus 224 p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~ 303 (543)
T 1nir_A 224 ARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGK 303 (543)
T ss_dssp EEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred cceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCe
Confidence 79999984 77888887 4899999999999998887542 237899999997665 556667899
Q ss_pred EEEEeCCCCceeE--EeecCCCCeEEEEEcCC--EEE-EEeCCCcEEEEEccCCeeeEEeec----CCcCEEEEEEecC-
Q 001039 988 ANIWDIRAGRQMH--KFLGHTKWIRSIRMDRD--TVI-TGSDDWTARMWSISRGTCDAVLAC----HAGPVQCVEYSSS- 1057 (1179)
Q Consensus 988 I~iwD~~~~~~~~--~~~~~~~~I~sl~~~~~--~l~-sgs~dg~I~iwd~~~~~~~~~~~~----h~~~V~~l~~spd- 1057 (1179)
|.+||..+++.+. .+ .+...+..+.|+++ +++ ++..+++|.+||..++++...+.. |.+....+ ++|+
T Consensus 304 i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~ 381 (543)
T 1nir_A 304 VLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKY 381 (543)
T ss_dssp EEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTT
T ss_pred EEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCC
Confidence 9999998876544 33 45667888888654 555 455689999999999999888874 55444443 5787
Q ss_pred CCEEEEEe-CCCcEEEEEcCCCCc----ceEEEeecccCceE--EEEecCCCEEEEEE-------CCCcEEEEeCCCCCc
Q 001039 1058 DRGIITGS-SDGLLRFWENDDAGG----IKCVKNVTIHSSAI--LSINAGDHWLGIGA-------ADNSMSLFHRPQERL 1123 (1179)
Q Consensus 1058 g~~l~sgs-~Dg~I~iwd~~~~~~----~~~~~~~~~h~~~i--~sis~dg~~lasgs-------~Dg~I~iwd~~~~~~ 1123 (1179)
|..++++. .|++|.+||+.+.+. .+++..+.+|...+ ..++|++++|++++ .+++|.+||+.+.+.
T Consensus 382 g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~ 461 (543)
T 1nir_A 382 GPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDA 461 (543)
T ss_dssp EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTS
T ss_pred ccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCC
Confidence 56666665 689999999987432 67888888887654 45589999999987 278999999985431
Q ss_pred CcccCCCCccccceee-----eecCCCcccEEEEEEcCCCCEEEEEe-----CCCcEEEEECCCCC
Q 001039 1124 GGFSGTGSKMSGWQLY-----RTPQKTVAVVRCIASDLERKRICSGG-----RNGLLRLWEATINI 1179 (1179)
Q Consensus 1124 ~~~~~~g~~~~~~~~~-----~~~~~h~~~V~~v~fspdg~~Lasgs-----~Dg~I~vWdv~tg~ 1179 (1179)
. .+.+ ..+..+...+..++|+|||+.++++. .|+.|.|||.+|++
T Consensus 462 ---------~--~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~ 516 (543)
T 1nir_A 462 ---------K--YQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLK 516 (543)
T ss_dssp ---------C--CEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred ---------C--eEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCce
Confidence 1 0111 01245677899999999999988762 48999999999974
No 129
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.93 E-value=7.6e-24 Score=281.03 Aligned_cols=360 Identities=8% Similarity=0.034 Sum_probs=269.0
Q ss_pred CCCCCcccccCCcceEEEEEccCCCceeeccC------c--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccC
Q 001039 757 DDQQPAEASGIGRSWVQSMFSREASSRSHSFS------R--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAG 828 (1179)
Q Consensus 757 ~~~~~~~~~gh~~~i~~~~fSpdg~~las~~~------d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~ 828 (1179)
.+++...+.+|...+.+++|||||++||+++. + |++|++.++. .+.+.+|.+
T Consensus 41 ~gg~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~--------------------~~~lt~~~~ 100 (1045)
T 1k32_A 41 KSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE--------------------IKRITYFSG 100 (1045)
T ss_dssp TTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE--------------------EEECCCCCE
T ss_pred CCCcEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC--------------------eEEcccCCC
Confidence 45667778889899999999999999997742 2 9999988654 466788888
Q ss_pred ce-------EEEEeecccceeccccccCCCCEEEEEeCC----C--cEEEEcCCCCCceeEEEeccccccEEEEecCCCE
Q 001039 829 AI-------TALHCVTKREVWDLVGDREDAGFFISGSTD----C--LVKIWDPSLRGSELRATLKGHTRTVRAINSDRGK 895 (1179)
Q Consensus 829 ~V-------~~v~~s~~~~~~~~~~~s~d~~~Lasgs~D----g--~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~ 895 (1179)
.+ .+++|+ |||+++++++.+ + .|++|++. +... ..+..+.....++++ | .
T Consensus 101 ~~~~~~~~~~~~~~S------------pDg~ll~~~~~~~~~~~~~~l~~~~~~--~g~~-~~l~~~~~~~~~~sp-G-~ 163 (1045)
T 1k32_A 101 KSTGRRMFTDVAGFD------------PDGNLIISTDAMQPFSSMTCLYRVEND--GINF-VPLNLGPATHILFAD-G-R 163 (1045)
T ss_dssp EEETTEECSEEEEEC------------TTCCEEEEECTTSSSTTCCEEEEEEGG--GTEE-EECCSCSCSEEEEET-T-E
T ss_pred cccccccccccccCC------------CCCEEEEEECCcCCCcccceEEEEECC--CCCe-EEecCCCcceeeeCC-C-E
Confidence 88 889987 899977787755 3 47777754 3333 334444444556888 7 8
Q ss_pred EEEEeC------------CCcEEEEECCCCeEEEEeecCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCC-CeEEEEecc
Q 001039 896 VVSGSD------------DQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRT-DTCVATVGR 962 (1179)
Q Consensus 896 l~sgs~------------dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~-~~~~~~~~~ 962 (1179)
+++++. +....+|....+.....+.+|...+.++.|+++..+++++.||++.+|++.. +.....+..
T Consensus 164 l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~ 243 (1045)
T 1k32_A 164 RVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTS 243 (1045)
T ss_dssp EEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCC
T ss_pred EEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecC
Confidence 888753 3455666543334455568999999999999766667778889999998653 334455544
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeec-----------CCCCeEEEEEc-CC--EEEEEeCCCcE
Q 001039 963 CSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLG-----------HTKWIRSIRMD-RD--TVITGSDDWTA 1028 (1179)
Q Consensus 963 ~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~-----------~~~~I~sl~~~-~~--~l~sgs~dg~I 1028 (1179)
+. .+...+|+|+|+.++.+. ++.|.+||+... .+..+.+ |...+.+++|+ ++ .+++++ ++.|
T Consensus 244 ~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~-~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i 319 (1045)
T 1k32_A 244 FT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDTE-KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQA 319 (1045)
T ss_dssp CC-SSCEEEEEESSSCEEEEE-TTEEEEECTTTC-CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEE
T ss_pred CC-CcceeeEcCCCCEEEEEe-CCEEEEecCCce-EeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEE
Confidence 44 456779999999998874 899999999543 4445544 23467888888 65 677776 8899
Q ss_pred EEEEccCCeeeEEeecCCc-CEEEEEEecCCCEEEEEeCCCcEE-EEEcCCCCcceEEEeecccCceE--EEEecCCCEE
Q 001039 1029 RMWSISRGTCDAVLACHAG-PVQCVEYSSSDRGIITGSSDGLLR-FWENDDAGGIKCVKNVTIHSSAI--LSINAGDHWL 1104 (1179)
Q Consensus 1029 ~iwd~~~~~~~~~~~~h~~-~V~~l~~spdg~~l~sgs~Dg~I~-iwd~~~~~~~~~~~~~~~h~~~i--~sis~dg~~l 1104 (1179)
.+|+..+++... +..|.. .+..++|+ ||+.+++++.++.+. +||..++. . ..+.+|...+ .+++|||++|
T Consensus 320 ~~~~~~~~~~~~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~-~---~~l~~~~~~~~~~~~SpDG~~l 393 (1045)
T 1k32_A 320 FIQDVSGTYVLK-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK-A---EKFEENLGNVFAMGVDRNGKFA 393 (1045)
T ss_dssp EEECTTSSBEEE-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC-E---EECCCCCCSEEEEEECTTSSEE
T ss_pred EEEcCCCCceEE-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC-c---eEecCCccceeeeEECCCCCEE
Confidence 999998876544 556777 89999999 999999999888888 89987732 2 2233555555 4568999999
Q ss_pred EEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCC----------cEEEEE
Q 001039 1105 GIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNG----------LLRLWE 1174 (1179)
Q Consensus 1105 asgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg----------~I~vWd 1174 (1179)
++++.++.|++||+.++ +......+|.+.+.+++|||||++|++++.++ .|++||
T Consensus 394 a~~~~~~~v~~~d~~tg---------------~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d 458 (1045)
T 1k32_A 394 VVANDRFEIMTVDLETG---------------KPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYD 458 (1045)
T ss_dssp EEEETTSEEEEEETTTC---------------CEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEE
T ss_pred EEECCCCeEEEEECCCC---------------ceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEE
Confidence 99999999999999743 23333446888899999999999999987754 899999
Q ss_pred CCCC
Q 001039 1175 ATIN 1178 (1179)
Q Consensus 1175 v~tg 1178 (1179)
+.++
T Consensus 459 ~~~g 462 (1045)
T 1k32_A 459 MEGR 462 (1045)
T ss_dssp TTTT
T ss_pred CCCC
Confidence 9876
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.92 E-value=8.2e-23 Score=250.24 Aligned_cols=314 Identities=7% Similarity=0.036 Sum_probs=241.6
Q ss_pred EEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceeccccccCCCC
Q 001039 775 MFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAG 852 (1179)
Q Consensus 775 ~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~ 852 (1179)
+|+|+|..+++++.+ |.+||..+++ .++++..+.. +.+++|+ |||+
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~-------------------~~~~i~~g~~-~~~v~~s------------pdg~ 191 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKK-------------------IVKVIDTGYA-VHISRMS------------ASGR 191 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCC-------------------EEEEEECSTT-EEEEEEC------------TTSC
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCce-------------------EEEEEecCcc-cceEEEC------------CCCC
Confidence 489999888888877 9999999887 6777773333 8888887 8999
Q ss_pred EEEEEeCCCcEEEEcCCCCCceeEEEeccccccE-EEEec----CCCEEEEEeC-CCcEEEEECCCCeEEEEeecC----
Q 001039 853 FFISGSTDCLVKIWDPSLRGSELRATLKGHTRTV-RAINS----DRGKVVSGSD-DQSVLVWDKQTSQLLEELKGH---- 922 (1179)
Q Consensus 853 ~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v-~~~s~----d~~~l~sgs~-dg~I~iwd~~t~~~~~~~~~h---- 922 (1179)
+|++++.|++|++||+...+......+..+..+. .+++| +|+++++++. +++|.+||..+++++.++..+
T Consensus 192 ~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~ 271 (543)
T 1nir_A 192 YLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTV 271 (543)
T ss_dssp EEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECS
T ss_pred EEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCccc
Confidence 9999999999999998312455556666443332 25799 9999999884 899999999999999888652
Q ss_pred -------CCcEEEEEEeC-CC-EEEEEEcCCeEEEEeCCCCeEEE--EeccCCCcEEEEEEcCCCCEEEEEe-CCCeEEE
Q 001039 923 -------DAQVSCVRMLS-GE-RVLTASHDGTVKMWDVRTDTCVA--TVGRCSSAVLCMEYDDSTGILAAGG-RDAVANI 990 (1179)
Q Consensus 923 -------~~~V~~l~~s~-~~-~l~sgs~dg~I~iwd~~~~~~~~--~~~~~~~~v~~l~~sp~~~~l~sgs-~dg~I~i 990 (1179)
...+..+.+++ +. .+++...+++|.+||..+++.+. .+ .+...+..++|+|+|+++++++ .++.|.+
T Consensus 272 ~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v 350 (543)
T 1nir_A 272 DTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAV 350 (543)
T ss_dssp SSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEE
T ss_pred CccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEE
Confidence 23688899983 44 46677789999999998876443 34 3456688899999999877655 5889999
Q ss_pred EeCCCCceeEEeec----CCCCeEEEEE-c-CCEEEEEe-CCCcEEEEEccC-------CeeeEEeecCCcCEEEEEEec
Q 001039 991 WDIRAGRQMHKFLG----HTKWIRSIRM-D-RDTVITGS-DDWTARMWSISR-------GTCDAVLACHAGPVQCVEYSS 1056 (1179)
Q Consensus 991 wD~~~~~~~~~~~~----~~~~I~sl~~-~-~~~l~sgs-~dg~I~iwd~~~-------~~~~~~~~~h~~~V~~l~~sp 1056 (1179)
||..+++.+..+.. |.+....+.. + +..++++. .|++|.+||+.+ ++++.++.+|.+.+..++++|
T Consensus 351 ~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~p 430 (543)
T 1nir_A 351 IDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP 430 (543)
T ss_dssp EETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCT
T ss_pred EECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCC
Confidence 99999999888764 5544444432 2 33566665 689999999998 899999999999999999999
Q ss_pred CCCEEEEEe-------CCCcEEEEEcCCCCcc-eEEEe-----ecccCceEEE--EecCCCEEEEEE-----CCCcEEEE
Q 001039 1057 SDRGIITGS-------SDGLLRFWENDDAGGI-KCVKN-----VTIHSSAILS--INAGDHWLGIGA-----ADNSMSLF 1116 (1179)
Q Consensus 1057 dg~~l~sgs-------~Dg~I~iwd~~~~~~~-~~~~~-----~~~h~~~i~s--is~dg~~lasgs-----~Dg~I~iw 1116 (1179)
+|++|++++ .+++|.+||+.+.+.. +.+.. +..+...+.. ++++|+.++++. .|+.|.||
T Consensus 431 dg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~ 510 (543)
T 1nir_A 431 KSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVV 510 (543)
T ss_dssp TCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEE
T ss_pred CCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEE
Confidence 999999987 2779999999986544 22211 1234455544 489999999763 37999999
Q ss_pred eCCCC
Q 001039 1117 HRPQE 1121 (1179)
Q Consensus 1117 d~~~~ 1121 (1179)
|..+.
T Consensus 511 D~~t~ 515 (543)
T 1nir_A 511 DDKTL 515 (543)
T ss_dssp ETTTT
T ss_pred ECCCc
Confidence 99844
No 131
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.92 E-value=5.9e-23 Score=272.46 Aligned_cols=399 Identities=14% Similarity=0.111 Sum_probs=283.7
Q ss_pred CCCCCcccccCCcce-------EEEEEccCCCceeeccCc--------eEeeeCCCCCCCCCCCCCCC------------
Q 001039 757 DDQQPAEASGIGRSW-------VQSMFSREASSRSHSFSR--------VRKWTSDAANENGTPRKQDS------------ 809 (1179)
Q Consensus 757 ~~~~~~~~~gh~~~i-------~~~~fSpdg~~las~~~d--------I~vWd~~~~~~~~~~~~~~~------------ 809 (1179)
.+++...+.+|...+ ..++|||||+.+++++.+ |++|++.++...........
T Consensus 88 ~~g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~ 167 (1045)
T 1k32_A 88 ENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIG 167 (1045)
T ss_dssp TTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEE
T ss_pred CCCCeEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEe
Confidence 345556667777777 788999999977776632 77888776542110000000
Q ss_pred -----C------CCC-------cccccceEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCC
Q 001039 810 -----T------AGG-------KKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLR 871 (1179)
Q Consensus 810 -----~------~~~-------~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~ 871 (1179)
. .+. .........+.+|.+.+.++.|+ ++ .++++++.||++++|.++..
T Consensus 168 ~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s------------~d-~l~~~~~~dg~~~l~~~~~~ 234 (1045)
T 1k32_A 168 RNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIV------------GH-RIYFITDIDGFGQIYSTDLD 234 (1045)
T ss_dssp ESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEE------------TT-EEEEEECTTSSCEEEEEETT
T ss_pred ccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEe------------CC-EEEEEEeccCceEEEEEeCC
Confidence 0 000 00012345568899999999997 55 67778888999999986533
Q ss_pred CceeEEEeccccc-cEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeec-----------CCCcEEEEEEe-C-CCEE
Q 001039 872 GSELRATLKGHTR-TVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKG-----------HDAQVSCVRML-S-GERV 937 (1179)
Q Consensus 872 ~~~~~~~l~~h~~-~v~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~-----------h~~~V~~l~~s-~-~~~l 937 (1179)
+... ..+..|.. ...++++||+.++++. ++.|.+||....+. ..+.+ |...+.+++|+ + +..+
T Consensus 235 g~~~-~~l~~~~~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~l-~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~l 311 (1045)
T 1k32_A 235 GKDL-RKHTSFTDYYPRHLNTDGRRILFSK-GGSIYIFNPDTEKI-EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLI 311 (1045)
T ss_dssp SCSC-EECCCCCSSCEEEEEESSSCEEEEE-TTEEEEECTTTCCE-EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCE
T ss_pred CCcc-eEecCCCCcceeeEcCCCCEEEEEe-CCEEEEecCCceEe-eeeccCcccccccccccccccceeeecCCCCCEE
Confidence 3333 44545543 3558899999998885 89999999955444 35554 33468899998 5 5667
Q ss_pred EEEEcCCeEEEEeCCCCeEEEEeccCCC-cEEEEEEcCCCCEEEEEeCCCeEE-EEeCCCCceeEEeecCCCCeEEEEEc
Q 001039 938 LTASHDGTVKMWDVRTDTCVATVGRCSS-AVLCMEYDDSTGILAAGGRDAVAN-IWDIRAGRQMHKFLGHTKWIRSIRMD 1015 (1179)
Q Consensus 938 ~sgs~dg~I~iwd~~~~~~~~~~~~~~~-~v~~l~~sp~~~~l~sgs~dg~I~-iwD~~~~~~~~~~~~~~~~I~sl~~~ 1015 (1179)
++++ ++.|.+|+..+++... +..+.. .+.+++|+ +|+.++.++.++.+. +||+.+++.. .+.+|...+.+++|+
T Consensus 312 a~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~S 387 (1045)
T 1k32_A 312 AFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVD 387 (1045)
T ss_dssp EEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEEC
T ss_pred EEEE-cCEEEEEcCCCCceEE-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCCccceeeeEEC
Confidence 7776 8899999998887554 556666 89999999 999999999888898 9999877654 444788889999996
Q ss_pred C--CEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCC----------cEEEEEcCCCCcceE
Q 001039 1016 R--DTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDG----------LLRFWENDDAGGIKC 1083 (1179)
Q Consensus 1016 ~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg----------~I~iwd~~~~~~~~~ 1083 (1179)
+ +.+++++.++.|++||+.+++......+|.+.+.+++|+|||++|++++.++ .|++||+.++ .
T Consensus 388 pDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g---~- 463 (1045)
T 1k32_A 388 RNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR---K- 463 (1045)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT---E-
T ss_pred CCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCC---c-
Confidence 5 5899999999999999999998888878999999999999999999887654 8999999873 3
Q ss_pred EEeecccCceE--EEEecCCCEEEEEECCCcEEEEeCCCCCcCc----------ccCCCCcc-----------------c
Q 001039 1084 VKNVTIHSSAI--LSINAGDHWLGIGAADNSMSLFHRPQERLGG----------FSGTGSKM-----------------S 1134 (1179)
Q Consensus 1084 ~~~~~~h~~~i--~sis~dg~~lasgs~Dg~I~iwd~~~~~~~~----------~~~~g~~~-----------------~ 1134 (1179)
...+..|...+ .+++|||++|++++.++...+|+........ +...+... .
T Consensus 464 ~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 543 (1045)
T 1k32_A 464 IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLN 543 (1045)
T ss_dssp EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCT
T ss_pred EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCcccccccccccc
Confidence 44555565555 4468999999999999888888764322100 00000000 0
Q ss_pred c-ceeeeecCCCcccEEEEEEcCCCCEEEE-------------EeCCCcEEEEECCCCC
Q 001039 1135 G-WQLYRTPQKTVAVVRCIASDLERKRICS-------------GGRNGLLRLWEATINI 1179 (1179)
Q Consensus 1135 ~-~~~~~~~~~h~~~V~~v~fspdg~~Las-------------gs~Dg~I~vWdv~tg~ 1179 (1179)
. ......+..|.+.+.+++++|||+++++ .+.++.|.+||+.+++
T Consensus 544 g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~ 602 (1045)
T 1k32_A 544 DMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK 602 (1045)
T ss_dssp TGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC
T ss_pred CHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCc
Confidence 0 0112334457788999999999988875 1235578888888763
No 132
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.90 E-value=4.4e-22 Score=236.03 Aligned_cols=287 Identities=10% Similarity=0.021 Sum_probs=218.7
Q ss_pred CCC-CEEEEEe----CCC----cEEEEcC--CCCCceeEEEeccccccEEEE--ec--------------CCCEEEEEeC
Q 001039 849 EDA-GFFISGS----TDC----LVKIWDP--SLRGSELRATLKGHTRTVRAI--NS--------------DRGKVVSGSD 901 (1179)
Q Consensus 849 ~d~-~~Lasgs----~Dg----~I~lWd~--~~~~~~~~~~l~~h~~~v~~~--s~--------------d~~~l~sgs~ 901 (1179)
+.| +++++|+ .|| +|++||+ ..........+.+|...+..+ ++ .+..++.++.
T Consensus 72 ~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~ 151 (415)
T 2hqs_A 72 ALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQ 151 (415)
T ss_dssp TTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEE
T ss_pred hcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEe
Confidence 444 5777886 468 8999998 533322235688888776643 21 2667777665
Q ss_pred C------CcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCC---eEEEEeCCCCeEEEEeccCCCcEEEEE
Q 001039 902 D------QSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDG---TVKMWDVRTDTCVATVGRCSSAVLCME 971 (1179)
Q Consensus 902 d------g~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg---~I~iwd~~~~~~~~~~~~~~~~v~~l~ 971 (1179)
+ ++|++||+.. .....+.+|...+.+++|+ +++.+++++.++ .|++||+.+++... +..+...+.+++
T Consensus 152 ~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~-l~~~~~~~~~~~ 229 (415)
T 2hqs_A 152 TNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPA 229 (415)
T ss_dssp CSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-EECCSSCEEEEE
T ss_pred cCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE-eecCCCcccCEE
Confidence 4 7999999974 4567777899999999999 688999999875 99999999998764 556778899999
Q ss_pred EcCCCCEEE-EEeCCC--eEEEEeCCCCceeEEeecCCCCeEEEEEcC--CEEEEEeC-CC--cEEEEEccCCeeeEEee
Q 001039 972 YDDSTGILA-AGGRDA--VANIWDIRAGRQMHKFLGHTKWIRSIRMDR--DTVITGSD-DW--TARMWSISRGTCDAVLA 1043 (1179)
Q Consensus 972 ~sp~~~~l~-sgs~dg--~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~--~~l~sgs~-dg--~I~iwd~~~~~~~~~~~ 1043 (1179)
|+|+|+.|+ +++.++ .|++||+++++. ..+..|...+.+++|++ +.+++++. ++ .|++||+.+++. ..+.
T Consensus 230 ~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~ 307 (415)
T 2hqs_A 230 FSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRIT 307 (415)
T ss_dssp ECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECC
T ss_pred EcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEe
Confidence 999999888 555555 499999998875 56778888999999965 47777775 45 678889888764 4455
Q ss_pred cCCcCEEEEEEecCCCEEEEEeCC---CcEEEEEcCCCCcceEEEeeccc-CceEEEEecCCCEEEEEECCC---cEEEE
Q 001039 1044 CHAGPVQCVEYSSSDRGIITGSSD---GLLRFWENDDAGGIKCVKNVTIH-SSAILSINAGDHWLGIGAADN---SMSLF 1116 (1179)
Q Consensus 1044 ~h~~~V~~l~~spdg~~l~sgs~D---g~I~iwd~~~~~~~~~~~~~~~h-~~~i~sis~dg~~lasgs~Dg---~I~iw 1116 (1179)
.+...+.+++|+|||++|++++.+ +.|++||+.++.. ..+..+ .....+++|+|++|++++.++ .|++|
T Consensus 308 ~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~----~~l~~~~~~~~~~~spdg~~l~~~s~~~~~~~l~~~ 383 (415)
T 2hqs_A 308 WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV----QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLV 383 (415)
T ss_dssp CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE----EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEE
T ss_pred cCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE----EEecCCCCcCCeEEcCCCCEEEEEEcCCCccEEEEE
Confidence 677789999999999999988764 5899999988432 223333 233456789999999988877 79999
Q ss_pred eCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCC
Q 001039 1117 HRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERK 1159 (1179)
Q Consensus 1117 d~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~ 1159 (1179)
|+.+ .....+..|.+.|++++|+|...
T Consensus 384 d~~g----------------~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 384 STDG----------------RFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp ETTS----------------CCEEECCCSSSEEEEEEECCCCC
T ss_pred ECCC----------------CcEEEeeCCCCCCcCCccccccc
Confidence 9863 23456778899999999999754
No 133
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.89 E-value=3e-21 Score=246.75 Aligned_cols=317 Identities=8% Similarity=0.057 Sum_probs=234.0
Q ss_pred cCceEEEEeecccceeccccccCCCCEEEEEeC-CC-----cEEEEcCCCCCceeEEEecccccc---------------
Q 001039 827 AGAITALHCVTKREVWDLVGDREDAGFFISGST-DC-----LVKIWDPSLRGSELRATLKGHTRT--------------- 885 (1179)
Q Consensus 827 ~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~-Dg-----~I~lWd~~~~~~~~~~~l~~h~~~--------------- 885 (1179)
...|.+++|+ |||++|++++. || +|++||+.. .+....+..+...
T Consensus 36 ~~~~~~~~~S------------pdG~~la~~~~~d~~~~~~~i~~~d~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (741)
T 2ecf_A 36 GPTLMKPKVA------------PDGSRVTFLRGKDSDRNQLDLWSYDIGS--GQTRLLVDSKVVLPGTETLSDEEKARRE 101 (741)
T ss_dssp CCCCEEEEEC------------TTSSEEEEEECCSSCTTEEEEEEEETTT--CCEEEEECGGGTC---------------
T ss_pred CCCCCCceEe------------cCCCEEEEEeccCCCCcccEEEEEECCC--CceeEccchhhcccccccccchhhhhhh
Confidence 4568899998 89999999998 88 899999863 3333444433221
Q ss_pred ---------EE--EEecCCCEEEEEeCCCcEEEEECCCCe--EEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeC
Q 001039 886 ---------VR--AINSDRGKVVSGSDDQSVLVWDKQTSQ--LLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDV 951 (1179)
Q Consensus 886 ---------v~--~~s~d~~~l~sgs~dg~I~iwd~~t~~--~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~ 951 (1179)
+. +++|||++|++++. ++|++||+.+++ ....+..+...+.+++|+ +|++++.++ ++.|.+||+
T Consensus 102 ~~~~~~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~ 179 (741)
T 2ecf_A 102 RQRIAAMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDL 179 (741)
T ss_dssp -----CCEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEET
T ss_pred hhhhccccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEec
Confidence 32 68999999999987 999999999873 345567788889999999 677788776 569999999
Q ss_pred CCCeEEEEeccCCCc----------------EEEEEEcCCCCEEEEEeCCC-----------------------------
Q 001039 952 RTDTCVATVGRCSSA----------------VLCMEYDDSTGILAAGGRDA----------------------------- 986 (1179)
Q Consensus 952 ~~~~~~~~~~~~~~~----------------v~~l~~sp~~~~l~sgs~dg----------------------------- 986 (1179)
.+++.......+... +.+++|+|||++|++++.|+
T Consensus 180 ~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~ 259 (741)
T 2ecf_A 180 ASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDA 259 (741)
T ss_dssp TTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSC
T ss_pred CCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCC
Confidence 998876655443332 47799999999999987765
Q ss_pred ----eEEEEeCCC-CceeEEee--cCCCCeEEEEE-cCCEEEEEeC-----CCcEEEEEccCCeeeEEeecCCc----CE
Q 001039 987 ----VANIWDIRA-GRQMHKFL--GHTKWIRSIRM-DRDTVITGSD-----DWTARMWSISRGTCDAVLACHAG----PV 1049 (1179)
Q Consensus 987 ----~I~iwD~~~-~~~~~~~~--~~~~~I~sl~~-~~~~l~sgs~-----dg~I~iwd~~~~~~~~~~~~h~~----~V 1049 (1179)
.|.+||+.+ ++...... .|...+.+++| +++.|++++. ++.|++||+.+++....+..+.. .+
T Consensus 260 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~ 339 (741)
T 2ecf_A 260 NVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNWRDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLH 339 (741)
T ss_dssp CCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEEEETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCC
T ss_pred CCeeEEEEEECCCCCceEEecCCCCcceEEEEEEeCCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcC
Confidence 899999998 77654433 36677888887 3346766543 56899999999988777765543 45
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEE---EEecCCCEEEE-EECCC--cEEEEeCCCCCc
Q 001039 1050 QCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAIL---SINAGDHWLGI-GAADN--SMSLFHRPQERL 1123 (1179)
Q Consensus 1050 ~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~---sis~dg~~las-gs~Dg--~I~iwd~~~~~~ 1123 (1179)
.+++|+|||+++++++.||.+++|.++..+. ...+..+...+. .++++|+.|+. ++.++ .+++|++...
T Consensus 340 ~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~---~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~-- 414 (741)
T 2ecf_A 340 NSLRFLDDGSILWSSERTGFQHLYRIDSKGK---AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQ-- 414 (741)
T ss_dssp SCCEECTTSCEEEEECTTSSCEEEEECSSSC---EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETT--
T ss_pred CceEECCCCeEEEEecCCCccEEEEEcCCCC---eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcC--
Confidence 6899999999999999999888888764322 455556665553 47899987765 44455 8999998521
Q ss_pred CcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCC----CcEEEEECCC
Q 001039 1124 GGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRN----GLLRLWEATI 1177 (1179)
Q Consensus 1124 ~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~D----g~I~vWdv~t 1177 (1179)
| .....+.. ...+.+++|||||++|+....+ +.+.+|+..+
T Consensus 415 ------g------~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~ 459 (741)
T 2ecf_A 415 ------G------GQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANG 459 (741)
T ss_dssp ------C------CCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTS
T ss_pred ------C------CCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCC
Confidence 2 11122323 4567899999999998876443 4688888754
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.89 E-value=7.7e-21 Score=242.89 Aligned_cols=317 Identities=9% Similarity=0.016 Sum_probs=232.0
Q ss_pred CcceEEEEEccCCCceeeccC--------ceEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEeccc------------
Q 001039 768 GRSWVQSMFSREASSRSHSFS--------RVRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHA------------ 827 (1179)
Q Consensus 768 ~~~i~~~~fSpdg~~las~~~--------dI~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~------------ 827 (1179)
...+..++|||||+++++++. .|++||+++++ ..+.+.+|.
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~-------------------~~~~~~~~~~~~~~~~~~~~~ 96 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQ-------------------TRLLVDSKVVLPGTETLSDEE 96 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCC-------------------EEEEECGGGTC----------
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCc-------------------eeEccchhhcccccccccchh
Confidence 456888999999999998765 39999998876 233333332
Q ss_pred ------------CceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEE--EEecCC
Q 001039 828 ------------GAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDR 893 (1179)
Q Consensus 828 ------------~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~--~~s~d~ 893 (1179)
..|.+++|| |||++|++++. +.|++||+..........+..|...+. +++|||
T Consensus 97 ~~~~~~~~~~~~~~v~~~~~S------------pDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG 163 (741)
T 2ecf_A 97 KARRERQRIAAMTGIVDYQWS------------PDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKG 163 (741)
T ss_dssp ----------CCEESCCCEEC------------TTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTS
T ss_pred hhhhhhhhhccccCcceeEEC------------CCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCC
Confidence 236677776 99999999986 999999987321002244666766666 579999
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEeecCCCc----------------EEEEEEe-CCCEEEEEEcCC------------
Q 001039 894 GKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQ----------------VSCVRML-SGERVLTASHDG------------ 944 (1179)
Q Consensus 894 ~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~----------------V~~l~~s-~~~~l~sgs~dg------------ 944 (1179)
++|++++. +.|++||+.+++.......+... +.+++|+ +++.|++++.|+
T Consensus 164 ~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~ 242 (741)
T 2ecf_A 164 GFVSFIRG-RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVY 242 (741)
T ss_dssp SEEEEEET-TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEEC
T ss_pred CEEEEEeC-CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCC
Confidence 99999884 69999999998877655544432 3678999 788888887765
Q ss_pred ---------------------eEEEEeCCC-CeEEEEec--cCCCcEEEEEEcCCCCEEEEEeC-----CCeEEEEeCCC
Q 001039 945 ---------------------TVKMWDVRT-DTCVATVG--RCSSAVLCMEYDDSTGILAAGGR-----DAVANIWDIRA 995 (1179)
Q Consensus 945 ---------------------~I~iwd~~~-~~~~~~~~--~~~~~v~~l~~sp~~~~l~sgs~-----dg~I~iwD~~~ 995 (1179)
.|.+||+.+ ++...... .+...+.+++| |||+.|++++. ++.|++||+.+
T Consensus 243 p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~ 321 (741)
T 2ecf_A 243 ADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLAS 321 (741)
T ss_dssp SSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTT
T ss_pred CCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCC
Confidence 889999998 87655443 36678999999 99999987764 56899999999
Q ss_pred CceeEEeecCCC----CeEEEEEc--CCEEEEEeCCCcEEEEEcc-CCeeeEEeecCCcCEEEE-EEecCCCEEEEE-eC
Q 001039 996 GRQMHKFLGHTK----WIRSIRMD--RDTVITGSDDWTARMWSIS-RGTCDAVLACHAGPVQCV-EYSSSDRGIITG-SS 1066 (1179)
Q Consensus 996 ~~~~~~~~~~~~----~I~sl~~~--~~~l~sgs~dg~I~iwd~~-~~~~~~~~~~h~~~V~~l-~~spdg~~l~sg-s~ 1066 (1179)
++....+..+.. .+.+++|+ ++++++++.||.+++|.++ ++. ...+..|...+.++ .|+|+|+.++.. +.
T Consensus 322 g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~ 400 (741)
T 2ecf_A 322 NQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGI 400 (741)
T ss_dssp CCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECS
T ss_pred CceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeC
Confidence 988776655543 34577774 4588889999988888775 445 77788888889887 599999987654 44
Q ss_pred CC--cEEEEEcCCCC-cceEEEeecccCceEEEEecCCCEEEEEECC----CcEEEEeCCCC
Q 001039 1067 DG--LLRFWENDDAG-GIKCVKNVTIHSSAILSINAGDHWLGIGAAD----NSMSLFHRPQE 1121 (1179)
Q Consensus 1067 Dg--~I~iwd~~~~~-~~~~~~~~~~h~~~i~sis~dg~~lasgs~D----g~I~iwd~~~~ 1121 (1179)
++ .+++|++...+ ....+.. .......+++|||+.++....+ +.+.+|+..++
T Consensus 401 ~~~~~~~l~~~~~~g~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 401 ESARESQIYAVPLQGGQPQRLSK--APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp SCTTCBEEEEEETTCCCCEECCC--SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred CCCceEEEEEEEcCCCCeeeccc--CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 55 89999987532 2233322 1122345678999998876544 56889987654
No 135
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.88 E-value=6.7e-21 Score=225.88 Aligned_cols=266 Identities=10% Similarity=0.064 Sum_probs=205.5
Q ss_pred EecCC-CEEEEEe----CCC----cEEEEEC--CCCeEE--EEeecCCCcEEEEEEeC---------------CCEEEEE
Q 001039 889 INSDR-GKVVSGS----DDQ----SVLVWDK--QTSQLL--EELKGHDAQVSCVRMLS---------------GERVLTA 940 (1179)
Q Consensus 889 ~s~d~-~~l~sgs----~dg----~I~iwd~--~t~~~~--~~~~~h~~~V~~l~~s~---------------~~~l~sg 940 (1179)
+.+.| ..+++|+ .|| ++++||+ .+++.+ ..+.+|...+..+++.. +..++.+
T Consensus 70 w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~ 149 (415)
T 2hqs_A 70 WSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYV 149 (415)
T ss_dssp HHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEE
T ss_pred HHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEE
Confidence 44555 4566775 567 8999999 899887 45888888777766652 6677777
Q ss_pred EcC------CeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCC---eEEEEeCCCCceeEEeecCCCCeEE
Q 001039 941 SHD------GTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDA---VANIWDIRAGRQMHKFLGHTKWIRS 1011 (1179)
Q Consensus 941 s~d------g~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg---~I~iwD~~~~~~~~~~~~~~~~I~s 1011 (1179)
+.+ ++|++||+.. .....+..|...+.+++|+|+|+.+++++.++ .|++||+++++.. .+..+...+.+
T Consensus 150 s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~ 227 (415)
T 2hqs_A 150 VQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGA 227 (415)
T ss_dssp EECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEE
T ss_pred EecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccC
Confidence 664 7999999974 44566667888999999999999999999875 9999999998775 56678889999
Q ss_pred EEEcCC--EEE-EEeCCCc--EEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeC-CC--cEEEEEcCCCCcceE
Q 001039 1012 IRMDRD--TVI-TGSDDWT--ARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSS-DG--LLRFWENDDAGGIKC 1083 (1179)
Q Consensus 1012 l~~~~~--~l~-sgs~dg~--I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~-Dg--~I~iwd~~~~~~~~~ 1083 (1179)
++|+++ .++ +++.|+. |++||+.+++. ..+..|...+.+++|+|||++|++++. +| .|++||+.++.
T Consensus 228 ~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~---- 302 (415)
T 2hqs_A 228 PAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA---- 302 (415)
T ss_dssp EEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC----
T ss_pred EEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC----
Confidence 999654 566 6666655 99999998876 567778889999999999999998886 45 67777887743
Q ss_pred EEeecccCceE--EEEecCCCEEEEEECC---CcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCC
Q 001039 1084 VKNVTIHSSAI--LSINAGDHWLGIGAAD---NSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLER 1158 (1179)
Q Consensus 1084 ~~~~~~h~~~i--~sis~dg~~lasgs~D---g~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg 1158 (1179)
...+..+...+ .+++|+|++|++++.+ +.|++||+.++ +. ..+..|. .+.+++|+|||
T Consensus 303 ~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~---------------~~-~~l~~~~-~~~~~~~spdg 365 (415)
T 2hqs_A 303 PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG---------------GV-QVLSSTF-LDETPSLAPNG 365 (415)
T ss_dssp CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC---------------CE-EECCCSS-SCEEEEECTTS
T ss_pred EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCC---------------CE-EEecCCC-CcCCeEEcCCC
Confidence 22233444445 4568999999988764 58999999743 12 2233443 78999999999
Q ss_pred CEEEEEeCCC---cEEEEECCCC
Q 001039 1159 KRICSGGRNG---LLRLWEATIN 1178 (1179)
Q Consensus 1159 ~~Lasgs~Dg---~I~vWdv~tg 1178 (1179)
++|++++.|+ .|++||++++
T Consensus 366 ~~l~~~s~~~~~~~l~~~d~~g~ 388 (415)
T 2hqs_A 366 TMVIYSSSQGMGSVLNLVSTDGR 388 (415)
T ss_dssp SEEEEEEEETTEEEEEEEETTSC
T ss_pred CEEEEEEcCCCccEEEEEECCCC
Confidence 9999998887 7999998765
No 136
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.87 E-value=5.9e-21 Score=243.21 Aligned_cols=344 Identities=8% Similarity=0.043 Sum_probs=233.8
Q ss_pred eEEEEEccCCCceeeccCc-eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccC---ceEEEEeecccceecccc
Q 001039 771 WVQSMFSREASSRSHSFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAG---AITALHCVTKREVWDLVG 846 (1179)
Q Consensus 771 i~~~~fSpdg~~las~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~---~V~~v~~s~~~~~~~~~~ 846 (1179)
...++|||||++++++.+. |++||+.+++ ....+.+|.. .|.+++||
T Consensus 19 ~~~~~~spdg~~~~~~~dg~i~~~d~~~g~-------------------~~~~~~~~~~~~~~v~~~~~S---------- 69 (723)
T 1xfd_A 19 DPEAKWISDTEFIYREQKGTVRLWNVETNT-------------------STVLIEGKKIESLRAIRYEIS---------- 69 (723)
T ss_dssp CCCCCBSSSSCBCCCCSSSCEEEBCGGGCC-------------------CEEEECTTTTTTTTCSEEEEC----------
T ss_pred ccccEEcCCCcEEEEeCCCCEEEEECCCCc-------------------EEEEeccccccccccceEEEC----------
Confidence 4567999999988774333 9999999887 5667777765 49999998
Q ss_pred ccCCCCEEEEEeCC---------CcEEEEcCCCCCceeEEEeccccccEE--EEecCCCEEEEEeCCCcEEEEECCCCeE
Q 001039 847 DREDAGFFISGSTD---------CLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKVVSGSDDQSVLVWDKQTSQL 915 (1179)
Q Consensus 847 ~s~d~~~Lasgs~D---------g~I~lWd~~~~~~~~~~~l~~h~~~v~--~~s~d~~~l~sgs~dg~I~iwd~~t~~~ 915 (1179)
|||++|++++.+ +.|++||+.......+....+|...+. ++||||+.|+.++. +.|++||+.+++.
T Consensus 70 --pDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~ 146 (723)
T 1xfd_A 70 --PDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA 146 (723)
T ss_dssp --TTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC
T ss_pred --CCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCce
Confidence 899999999875 778899987332212222233443343 57999999999986 7999999999887
Q ss_pred EEEeecCCCcE------------------EEEEEe-CCCEEEEEEcC-CeEEEEeCCCCeEEEEeccCCCcEEEEEEcCC
Q 001039 916 LEELKGHDAQV------------------SCVRML-SGERVLTASHD-GTVKMWDVRTDTCVATVGRCSSAVLCMEYDDS 975 (1179)
Q Consensus 916 ~~~~~~h~~~V------------------~~l~~s-~~~~l~sgs~d-g~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~ 975 (1179)
......+...+ .+++|+ +++.|++++.| +.+.+|++.... ..+...+..+.|.++
T Consensus 147 ~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 221 (723)
T 1xfd_A 147 IRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYT-----GSIYPTVKPYHYPKA 221 (723)
T ss_dssp EEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCS-----SSSSCCCEEEECCBT
T ss_pred EEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccC-----CcCCCcceeccCCCC
Confidence 76665544333 789999 67888887754 567778764322 112345788888887
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEeecC------CCCeEEEEEcCC--EEEEEeC----CCcEEEEEccCCeeeEEee
Q 001039 976 TGILAAGGRDAVANIWDIRAGRQMHKFLGH------TKWIRSIRMDRD--TVITGSD----DWTARMWSISRGTCDAVLA 1043 (1179)
Q Consensus 976 ~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~------~~~I~sl~~~~~--~l~sgs~----dg~I~iwd~~~~~~~~~~~ 1043 (1179)
|.. ..+..|++||+.+++....+..+ ...+.+++|+++ .+++.+. +..|++||+.+++....+.
T Consensus 222 G~~----~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~ 297 (723)
T 1xfd_A 222 GSE----NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHE 297 (723)
T ss_dssp TSC----CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEE
T ss_pred CCC----CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEE
Confidence 763 33458999999998866666554 567889999665 6655543 3579999999998776654
Q ss_pred c-CCcCEE----EEEEecCCCEEEE--EeCCC------cEEEEEcCCCCcceEEEeecccCce---EEEEecCCCEEEEE
Q 001039 1044 C-HAGPVQ----CVEYSSSDRGIIT--GSSDG------LLRFWENDDAGGIKCVKNVTIHSSA---ILSINAGDHWLGIG 1107 (1179)
Q Consensus 1044 ~-h~~~V~----~l~~spdg~~l~s--gs~Dg------~I~iwd~~~~~~~~~~~~~~~h~~~---i~sis~dg~~lasg 1107 (1179)
. +.+.+. .++|+|||+.|+. +..++ .|.+||...++...+...+..+... +.+++|||+.|+..
T Consensus 298 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~ 377 (723)
T 1xfd_A 298 DESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFL 377 (723)
T ss_dssp EECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEE
T ss_pred eccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEE
Confidence 3 344443 7899999997775 44666 4666763232220012223222222 24689999999876
Q ss_pred ECC---CcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEe
Q 001039 1108 AAD---NSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGG 1165 (1179)
Q Consensus 1108 s~D---g~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs 1165 (1179)
+.+ +.+++|++... .+... ..+.....|...+..++|||||++|+...
T Consensus 378 ~~~~~~~~~~l~~~~~~-------~~~~~---~~l~~~~~~~~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 378 STEDLPRRRQLYSANTV-------GNFNR---QCLSCDLVENCTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp ESSSCTTCCEEEEECSS-------TTCCC---BCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred EcCCCCcceEEEEEeCC-------CCCCc---ceecccccCCCCeEEEEECCCCCEEEEEc
Confidence 655 78999998632 11000 11110012567788999999999888653
No 137
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.84 E-value=1.5e-18 Score=198.16 Aligned_cols=279 Identities=7% Similarity=0.038 Sum_probs=197.0
Q ss_pred EecCCCE-EEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEc-CCeEEEEeCCCCeE-EEEeccCC
Q 001039 889 INSDRGK-VVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASH-DGTVKMWDVRTDTC-VATVGRCS 964 (1179)
Q Consensus 889 ~s~d~~~-l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~-dg~I~iwd~~~~~~-~~~~~~~~ 964 (1179)
+..+++. +++++.++.|.+||..+++....+..+...+ +++|+ +++.+++++. ++.|.+||..+++. ...+..+.
T Consensus 5 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 83 (331)
T 3u4y_A 5 FQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQ 83 (331)
T ss_dssp --CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECS
T ss_pred EcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCC
Confidence 3444444 6777889999999999999988888777777 99998 5776666665 89999999999987 66666666
Q ss_pred CcEEEEEEcCCCCEEEEEeCCC---eEEEEeCCCCceeEEeecCCCCeEEEEEcCC---EEEEEeCCCc-EEEEEccCCe
Q 001039 965 SAVLCMEYDDSTGILAAGGRDA---VANIWDIRAGRQMHKFLGHTKWIRSIRMDRD---TVITGSDDWT-ARMWSISRGT 1037 (1179)
Q Consensus 965 ~~v~~l~~sp~~~~l~sgs~dg---~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~---~l~sgs~dg~-I~iwd~~~~~ 1037 (1179)
....+++|+|+|++++++..++ .|.+||+.+++.+..+..+ ....+++|+++ .++++..++. |.+|++....
T Consensus 84 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g 162 (331)
T 3u4y_A 84 SSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADG 162 (331)
T ss_dssp SCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTC
T ss_pred CCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCC
Confidence 6655599999999999655553 8999999999988877544 45688999655 4555566688 9999987643
Q ss_pred ee----EEeecCCcCEEEEEEecCCCEEEEE-eCCCcEEEEEcCCCCcceEEEeecccC-ceEEEEecCCCEEEEEE-CC
Q 001039 1038 CD----AVLACHAGPVQCVEYSSSDRGIITG-SSDGLLRFWENDDAGGIKCVKNVTIHS-SAILSINAGDHWLGIGA-AD 1110 (1179)
Q Consensus 1038 ~~----~~~~~h~~~V~~l~~spdg~~l~sg-s~Dg~I~iwd~~~~~~~~~~~~~~~h~-~~i~sis~dg~~lasgs-~D 1110 (1179)
.+ ...........+++|+|+|++++++ ..++.|++||+.++.....+..+..+. ..-.+++|+|+++++++ .+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~ 242 (331)
T 3u4y_A 163 VLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTEST 242 (331)
T ss_dssp CEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSE
T ss_pred cEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCC
Confidence 32 1222345568999999999976555 468999999998865422244444332 23367799999776665 57
Q ss_pred CcEEEEeCCCCCcCcccCCCCccccceeeeec---CCCcccEEEEEEcCCCCEEEEEe-CCCcEEEEECCCC
Q 001039 1111 NSMSLFHRPQERLGGFSGTGSKMSGWQLYRTP---QKTVAVVRCIASDLERKRICSGG-RNGLLRLWEATIN 1178 (1179)
Q Consensus 1111 g~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~---~~h~~~V~~v~fspdg~~Lasgs-~Dg~I~vWdv~tg 1178 (1179)
+.|.+||+.+.++.... ...... ........+++|+|||++|++++ .++.|.+||+.+.
T Consensus 243 ~~i~~~d~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 243 VDVFNFNQLSGTLSFVK---------SFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp EEEEEEETTTTEEEEEE---------EEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred CEEEEEECCCCceeeec---------ccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 88999999754321000 001110 11112236689999999886555 5679999999764
No 138
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.83 E-value=7e-19 Score=223.45 Aligned_cols=272 Identities=8% Similarity=0.023 Sum_probs=197.0
Q ss_pred CceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEE--EEecCCCEEEEEeCCCcE
Q 001039 828 GAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKVVSGSDDQSV 905 (1179)
Q Consensus 828 ~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~--~~s~d~~~l~sgs~dg~I 905 (1179)
..|.+++|+ || +.++.+. |++|++||+. +.... .+..+...+. +++|||++|+++ .|+.|
T Consensus 82 ~~v~~~~~s------------pd-~~~~~~~-~~~i~~~d~~--~~~~~-~l~~~~~~~~~~~~SpdG~~la~~-~~~~i 143 (706)
T 2z3z_A 82 FPSFRTLDA------------GR-GLVVLFT-QGGLVGFDML--ARKVT-YLFDTNEETASLDFSPVGDRVAYV-RNHNL 143 (706)
T ss_dssp CCCEEEEET------------TT-TEEEEEE-TTEEEEEETT--TTEEE-EEECCTTCCTTCEECTTSSEEEEE-ETTEE
T ss_pred cCceeEEEC------------CC-CeEEEEE-CCEEEEEECC--CCceE-EccCCcccccCCcCCCCCCEEEEE-ECCeE
Confidence 568999998 78 6665554 5999999986 33332 3334444443 689999999995 67999
Q ss_pred EEEECCC-----CeEEEEeecCCCc--------------EEEEEEe-CCCEEEEEE------------------------
Q 001039 906 LVWDKQT-----SQLLEELKGHDAQ--------------VSCVRML-SGERVLTAS------------------------ 941 (1179)
Q Consensus 906 ~iwd~~t-----~~~~~~~~~h~~~--------------V~~l~~s-~~~~l~sgs------------------------ 941 (1179)
++||+.+ ++.......+... +.+++|+ ++++|++++
T Consensus 144 ~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~ 223 (706)
T 2z3z_A 144 YIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPL 223 (706)
T ss_dssp EEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEE
T ss_pred EEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEe
Confidence 9999998 8776544444433 4789999 788888887
Q ss_pred ---------cCCeEEEEeCCCCeEEEEec--cCCCcEEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCceeEEee--
Q 001039 942 ---------HDGTVKMWDVRTDTCVATVG--RCSSAVLCMEYDDSTGILAAGGRDA-----VANIWDIRAGRQMHKFL-- 1003 (1179)
Q Consensus 942 ---------~dg~I~iwd~~~~~~~~~~~--~~~~~v~~l~~sp~~~~l~sgs~dg-----~I~iwD~~~~~~~~~~~-- 1003 (1179)
.++.|.+||+.+++...... .+...+.+++|+|||+.+++++.++ .|.+||+.+++....+.
T Consensus 224 ~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~ 303 (706)
T 2z3z_A 224 YYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVE 303 (706)
T ss_dssp CCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEE
T ss_pred eCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEc
Confidence 44679999999988655442 4567799999999999999987765 89999999984443332
Q ss_pred cCCC---CeEEEEEcC----CEEEEEeCCCcEEEEEcc-CCeeeEEeecCCcCEEE-EEEecCCCEEEEEeCC-C----c
Q 001039 1004 GHTK---WIRSIRMDR----DTVITGSDDWTARMWSIS-RGTCDAVLACHAGPVQC-VEYSSSDRGIITGSSD-G----L 1069 (1179)
Q Consensus 1004 ~~~~---~I~sl~~~~----~~l~sgs~dg~I~iwd~~-~~~~~~~~~~h~~~V~~-l~~spdg~~l~sgs~D-g----~ 1069 (1179)
.+.. .+.+++|++ +++++++.||.+++|+++ ++.....+..+...+.+ ++|+|+|+.|+.++.+ + .
T Consensus 304 ~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~ 383 (706)
T 2z3z_A 304 TDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERH 383 (706)
T ss_dssp ECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBE
T ss_pred cCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEE
Confidence 2222 235667755 488888899999999887 67777888888888887 7999999988766544 3 5
Q ss_pred EEEEEcCCCCcceEEEeecccCceE--EEEecCCCEEEEEECC----CcEEEEeCCCCC
Q 001039 1070 LRFWENDDAGGIKCVKNVTIHSSAI--LSINAGDHWLGIGAAD----NSMSLFHRPQER 1122 (1179)
Q Consensus 1070 I~iwd~~~~~~~~~~~~~~~h~~~i--~sis~dg~~lasgs~D----g~I~iwd~~~~~ 1122 (1179)
|..||..++. ...+. +...+ .+++|||++++.++.+ +.|++||+.+++
T Consensus 384 l~~~d~~~~~-~~~l~----~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 384 FYCIDIKGGK-TKDLT----PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EEEEETTCCC-CEESC----CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred EEEEEcCCCC-ceecc----CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 6666766532 22221 33334 5568999998877544 569999987553
No 139
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.83 E-value=6.2e-18 Score=194.55 Aligned_cols=260 Identities=10% Similarity=0.045 Sum_probs=201.6
Q ss_pred EEecCCCEEEEEeC-------CCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEE-EEcCCeEEEEeCCCCeEEE
Q 001039 888 AINSDRGKVVSGSD-------DQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLT-ASHDGTVKMWDVRTDTCVA 958 (1179)
Q Consensus 888 ~~s~d~~~l~sgs~-------dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~s-gs~dg~I~iwd~~~~~~~~ 958 (1179)
+++++++++++++. ++.|.+||..+++.+..+... ..+..++++ +++.+++ +..++.|.+||..+++.+.
T Consensus 47 ~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~ 125 (353)
T 3vgz_A 47 AYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKG 125 (353)
T ss_dssp EEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEE
T ss_pred EECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEE
Confidence 67999999988874 568999999999998888753 346788888 5665554 4557999999999999888
Q ss_pred EeccCCC---------cEEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCceeEEeecCCCCeEEEEEc--CCEEEEEeCC
Q 001039 959 TVGRCSS---------AVLCMEYDDSTGILAAGG--RDAVANIWDIRAGRQMHKFLGHTKWIRSIRMD--RDTVITGSDD 1025 (1179)
Q Consensus 959 ~~~~~~~---------~v~~l~~sp~~~~l~sgs--~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~--~~~l~sgs~d 1025 (1179)
.+..+.. .+.+++|+|+++.+++++ .++.|.+||..+++.+..+..+...+.+++++ ++.+++++.+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 205 (353)
T 3vgz_A 126 RLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNAD 205 (353)
T ss_dssp EEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTT
T ss_pred EEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCC
Confidence 7765432 278999999999887776 47899999999999988887566667777774 5689999999
Q ss_pred CcEEEEEccCCeeeEEeec----CCcCEEEEEEecCCCEEEEEeC-CCcEEEEEcCCCCcceEEEeecccCceEEEEecC
Q 001039 1026 WTARMWSISRGTCDAVLAC----HAGPVQCVEYSSSDRGIITGSS-DGLLRFWENDDAGGIKCVKNVTIHSSAILSINAG 1100 (1179)
Q Consensus 1026 g~I~iwd~~~~~~~~~~~~----h~~~V~~l~~spdg~~l~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~d 1100 (1179)
+.|.+||..+++....+.. +...+.+++|+|+|+++++++. ++.|.+||..+++ .+..+......-.+++++
T Consensus 206 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~---~~~~~~~~~~~~~~~s~d 282 (353)
T 3vgz_A 206 GELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGN---ILAKVAAPESLAVLFNPA 282 (353)
T ss_dssp SEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCC---EEEEEECSSCCCEEEETT
T ss_pred CeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCc---EEEEEEcCCCceEEECCC
Confidence 9999999999998887764 4567889999999998777665 5899999998844 333333344445778999
Q ss_pred CCEEEEEE-CCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCC
Q 001039 1101 DHWLGIGA-ADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRN 1167 (1179)
Q Consensus 1101 g~~lasgs-~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~D 1167 (1179)
|+++++++ .++.|.+||..+. +....... ...+.+++|+|||++|+.++.+
T Consensus 283 g~~l~v~~~~~~~v~~~d~~~~---------------~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 283 RNEAYVTHRQAGKVSVIDAKSY---------------KVVKTFDT-PTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp TTEEEEEETTTTEEEEEETTTT---------------EEEEEEEC-CSEEEEEEECTTSCEEEEEEEC
T ss_pred CCEEEEEECCCCeEEEEECCCC---------------eEEEEEec-CCCCCeEEEcCCCCEEEEEEcc
Confidence 99766665 6899999998733 23332222 2367899999999977776655
No 140
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.83 E-value=9.8e-19 Score=222.11 Aligned_cols=302 Identities=9% Similarity=0.060 Sum_probs=211.1
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCceeEEEecccc-----------------ccEE--EEecCCCEEEEEeCCCcEEEEECC
Q 001039 851 AGFFISGSTDCLVKIWDPSLRGSELRATLKGHT-----------------RTVR--AINSDRGKVVSGSDDQSVLVWDKQ 911 (1179)
Q Consensus 851 ~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~-----------------~~v~--~~s~d~~~l~sgs~dg~I~iwd~~ 911 (1179)
|+.+++++.|| | +||+..... ....+..|. ..+. +++|| +.++.+. +++|++||+.
T Consensus 35 g~~~~~~~~~~-i-~~d~~tg~~-~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~~i~~~d~~ 109 (706)
T 2z3z_A 35 GDNYVFIEGDD-L-VFNKANGKS-AQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QGGLVGFDML 109 (706)
T ss_dssp TTEEEEEETTE-E-EEEC--------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TTEEEEEETT
T ss_pred CCeEEEEeCCc-E-EEECCCCcE-eeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CCEEEEEECC
Confidence 56777788888 8 999873332 001222222 2344 56899 6666664 5999999999
Q ss_pred CCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCC-----CeEEEEeccCCCc--------------EEEEE
Q 001039 912 TSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRT-----DTCVATVGRCSSA--------------VLCME 971 (1179)
Q Consensus 912 t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~-----~~~~~~~~~~~~~--------------v~~l~ 971 (1179)
+++.... ..+...+.+++|+ +++.+++ +.++.|.+||+.+ ++.......+... +.+++
T Consensus 110 ~~~~~~l-~~~~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~ 187 (706)
T 2z3z_A 110 ARKVTYL-FDTNEETASLDFSPVGDRVAY-VRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTF 187 (706)
T ss_dssp TTEEEEE-ECCTTCCTTCEECTTSSEEEE-EETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEE
T ss_pred CCceEEc-cCCcccccCCcCCCCCCEEEE-EECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEE
Confidence 8876544 4466778889999 6777777 4789999999998 7766544433332 47899
Q ss_pred EcCCCCEEEEEe---------------------------------CCCeEEEEeCCCCceeEEee--cCCCCeEEEEEcC
Q 001039 972 YDDSTGILAAGG---------------------------------RDAVANIWDIRAGRQMHKFL--GHTKWIRSIRMDR 1016 (1179)
Q Consensus 972 ~sp~~~~l~sgs---------------------------------~dg~I~iwD~~~~~~~~~~~--~~~~~I~sl~~~~ 1016 (1179)
|+|||++|++++ .++.|.+||+.+++...... .+...+.+++|++
T Consensus 188 ~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp 267 (706)
T 2z3z_A 188 WSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSP 267 (706)
T ss_dssp ECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECT
T ss_pred ECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEEC
Confidence 999999999987 44689999999887654432 4667789999965
Q ss_pred --CEEEEEeCCC-----cEEEEEccCCeeeEE-ee-cCCc---CEEEEEEec--CCCEEEEEeCCCcEEEEEcCCCCcce
Q 001039 1017 --DTVITGSDDW-----TARMWSISRGTCDAV-LA-CHAG---PVQCVEYSS--SDRGIITGSSDGLLRFWENDDAGGIK 1082 (1179)
Q Consensus 1017 --~~l~sgs~dg-----~I~iwd~~~~~~~~~-~~-~h~~---~V~~l~~sp--dg~~l~sgs~Dg~I~iwd~~~~~~~~ 1082 (1179)
+.+++++.++ .|++||+.+++.... .. .+.. .+.+++|+| ||+++++++.||.+++|+++.. ..
T Consensus 268 dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~--~~ 345 (706)
T 2z3z_A 268 DENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTT--GR 345 (706)
T ss_dssp TSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETT--SC
T ss_pred CCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECC--CC
Confidence 4788877665 899999999843333 32 2222 246789999 9999999999999999988732 23
Q ss_pred EEEeecccCceE---EEEecCCCEEEEEECC-C----cEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEE
Q 001039 1083 CVKNVTIHSSAI---LSINAGDHWLGIGAAD-N----SMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIAS 1154 (1179)
Q Consensus 1083 ~~~~~~~h~~~i---~sis~dg~~lasgs~D-g----~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~f 1154 (1179)
.+..+..+...+ .+++++|+.|+.++.+ + .|+.||..++.. .. + .|...+.+++|
T Consensus 346 ~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~-------------~~---l-~~~~~~~~~~~ 408 (706)
T 2z3z_A 346 LIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT-------------KD---L-TPESGMHRTQL 408 (706)
T ss_dssp EEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC-------------EE---S-CCSSSEEEEEE
T ss_pred EEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc-------------ee---c-cCCCceEEEEE
Confidence 445555665545 4678999988766554 3 566666652210 11 1 25566899999
Q ss_pred cCCCCEEEEEeCC----CcEEEEECCCC
Q 001039 1155 DLERKRICSGGRN----GLLRLWEATIN 1178 (1179)
Q Consensus 1155 spdg~~Lasgs~D----g~I~vWdv~tg 1178 (1179)
||||++|+.++.+ +.|++||++++
T Consensus 409 spdg~~l~~~~~~~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 409 SPDGSAIIDIFQSPTVPRKVTVTNIGKG 436 (706)
T ss_dssp CTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred CCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence 9999998876544 56999999876
No 141
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.83 E-value=2.4e-18 Score=196.89 Aligned_cols=267 Identities=12% Similarity=0.159 Sum_probs=185.4
Q ss_pred EEEEEeCCCcEEEEECC-CC--eEEEEeecCCCcEEEEEEe-CCCEEEEEEcC-CeEEEEeCC--CCe--EEEEeccCCC
Q 001039 895 KVVSGSDDQSVLVWDKQ-TS--QLLEELKGHDAQVSCVRML-SGERVLTASHD-GTVKMWDVR--TDT--CVATVGRCSS 965 (1179)
Q Consensus 895 ~l~sgs~dg~I~iwd~~-t~--~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~d-g~I~iwd~~--~~~--~~~~~~~~~~ 965 (1179)
.+++++.|+.|++||+. ++ +.+..+ .+...+.+++|+ +++++++++.+ +.|.+|++. +++ .+..+..+.
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~- 84 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG- 84 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-
Confidence 34444789999999995 34 333343 467788899999 67778888876 999999997 555 334443333
Q ss_pred cEEEEEEcCCCCEEEEEeC-CCeEEEEeCC---CCceeEEeecCCCCeEEEEEcC--CEEEEEe-CCCcEEEEEccC-Ce
Q 001039 966 AVLCMEYDDSTGILAAGGR-DAVANIWDIR---AGRQMHKFLGHTKWIRSIRMDR--DTVITGS-DDWTARMWSISR-GT 1037 (1179)
Q Consensus 966 ~v~~l~~sp~~~~l~sgs~-dg~I~iwD~~---~~~~~~~~~~~~~~I~sl~~~~--~~l~sgs-~dg~I~iwd~~~-~~ 1037 (1179)
.+..++|+|+++++++++. ++.|.+||+. +.+.+..+..+ ..+.+++|++ +.+++++ .++.|++||+.+ ++
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~ 163 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGH 163 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCc
Confidence 7889999999998877664 8899999994 33444444433 4577888865 4677766 899999999987 65
Q ss_pred eeE----Eeec-CCcCEEEEEEecCCCEEEEEe-CCCcEEEEEcCCC-CcceEEEeec---cc-C--ce--EEEEecCCC
Q 001039 1038 CDA----VLAC-HAGPVQCVEYSSSDRGIITGS-SDGLLRFWENDDA-GGIKCVKNVT---IH-S--SA--ILSINAGDH 1102 (1179)
Q Consensus 1038 ~~~----~~~~-h~~~V~~l~~spdg~~l~sgs-~Dg~I~iwd~~~~-~~~~~~~~~~---~h-~--~~--i~sis~dg~ 1102 (1179)
... .... ....+.+++|+|+|+++++++ .++.|.+||++.. +......... .. . .. -.+++|+|+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~ 243 (343)
T 1ri6_A 164 LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGR 243 (343)
T ss_dssp EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSS
T ss_pred eeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCC
Confidence 432 2232 345788999999999776555 7899999999642 2222232222 11 1 12 366789998
Q ss_pred EEEEEE-CCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEe-CCCcEEEEECC
Q 001039 1103 WLGIGA-ADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGG-RNGLLRLWEAT 1176 (1179)
Q Consensus 1103 ~lasgs-~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs-~Dg~I~vWdv~ 1176 (1179)
++++++ .++.|.+||+... .+ ..+.......+.. +.+++|+|||++|++++ .|+.|.+|+++
T Consensus 244 ~l~v~~~~~~~i~v~d~~~~-------~~----~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 244 HLYACDRTASLITVFSVSED-------GS----VLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EEEEEETTTTEEEEEEECTT-------SC----CEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred EEEEEecCCCEEEEEEEcCC-------CC----ceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 887554 7899999998721 11 0133333333333 88999999999888887 68999999554
No 142
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.82 E-value=9.2e-18 Score=193.12 Aligned_cols=267 Identities=10% Similarity=0.093 Sum_probs=204.9
Q ss_pred ccCCcceEEEEEccCCCceeecc--------Cc-eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEe
Q 001039 765 SGIGRSWVQSMFSREASSRSHSF--------SR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHC 835 (1179)
Q Consensus 765 ~gh~~~i~~~~fSpdg~~las~~--------~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~ 835 (1179)
.........++|||||+++++++ .. |.+||..+++ .++.+.. ...+.+++|
T Consensus 37 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~-------------------~~~~~~~-~~~~~~~~~ 96 (353)
T 3vgz_A 37 KAVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLE-------------------VTQAIHN-DLKPFGATI 96 (353)
T ss_dssp EEEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCC-------------------EEEEEEE-SSCCCSEEE
T ss_pred hhhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCe-------------------EEEEEec-CCCcceEEE
Confidence 33456678899999999887766 23 9999998776 4455543 334677888
Q ss_pred ecccceeccccccCCCCEEE-EEeCCCcEEEEcCCCCCceeEEEecccccc---------E--EEEecCCCEEEEEe--C
Q 001039 836 VTKREVWDLVGDREDAGFFI-SGSTDCLVKIWDPSLRGSELRATLKGHTRT---------V--RAINSDRGKVVSGS--D 901 (1179)
Q Consensus 836 s~~~~~~~~~~~s~d~~~La-sgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~---------v--~~~s~d~~~l~sgs--~ 901 (1179)
+ ++|++++ ++..++.|.+||.. +.+....+..+... . .+++++++++++++ .
T Consensus 97 s------------~dg~~l~v~~~~~~~v~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~ 162 (353)
T 3vgz_A 97 N------------NTTQTLWFGNTVNSAVTAIDAK--TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK 162 (353)
T ss_dssp E------------TTTTEEEEEETTTTEEEEEETT--TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS
T ss_pred C------------CCCCEEEEEecCCCEEEEEeCC--CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC
Confidence 7 8888554 55557999999976 34444555443321 2 36799999888776 4
Q ss_pred CCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEecc----CCCcEEEEEEcCCC
Q 001039 902 DQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGR----CSSAVLCMEYDDST 976 (1179)
Q Consensus 902 dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~----~~~~v~~l~~sp~~ 976 (1179)
++.|.+||..+++.+..+..+...+.+++|+ +++.+++++.++.|.+||..+++....+.. +...+.+++|+|++
T Consensus 163 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg 242 (353)
T 3vgz_A 163 ESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTAR 242 (353)
T ss_dssp SCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTT
T ss_pred CceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCC
Confidence 7899999999999999888666678889998 688899999999999999999998877654 45568899999999
Q ss_pred CEEEEEeC-CCeEEEEeCCCCceeEEeecCCCCeEEEEE--cCCEEEE-EeCCCcEEEEEccCCeeeEEeecCCcCEEEE
Q 001039 977 GILAAGGR-DAVANIWDIRAGRQMHKFLGHTKWIRSIRM--DRDTVIT-GSDDWTARMWSISRGTCDAVLACHAGPVQCV 1052 (1179)
Q Consensus 977 ~~l~sgs~-dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~--~~~~l~s-gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l 1052 (1179)
+.+++++. ++.|.+||..+++.+..+..... ..+++ +++.+++ ...++.|.+||..+++.+..+.. ...+.++
T Consensus 243 ~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~ 319 (353)
T 3vgz_A 243 QRAFITDSKAAEVLVVDTRNGNILAKVAAPES--LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT-PTHPNSL 319 (353)
T ss_dssp TEEEEEESSSSEEEEEETTTCCEEEEEECSSC--CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC-CSEEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC--ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec-CCCCCeE
Confidence 98777765 48999999999998887765443 44666 4555544 44789999999999998888774 3478999
Q ss_pred EEecCCCEEEEEeCCC
Q 001039 1053 EYSSSDRGIITGSSDG 1068 (1179)
Q Consensus 1053 ~~spdg~~l~sgs~Dg 1068 (1179)
+|+|+|++++++..++
T Consensus 320 ~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 320 ALSADGKTLYVSVKQK 335 (353)
T ss_dssp EECTTSCEEEEEEECC
T ss_pred EEcCCCCEEEEEEccc
Confidence 9999999887776654
No 143
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.82 E-value=7.7e-18 Score=192.28 Aligned_cols=267 Identities=11% Similarity=0.061 Sum_probs=192.9
Q ss_pred CCCEEEEEeCCCcEEEEcCCCCCceeEEEecccccc-EEEEecCCCEEEEEeC-CCcEEEEECCCCeE-EEEeecCCCcE
Q 001039 850 DAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRT-VRAINSDRGKVVSGSD-DQSVLVWDKQTSQL-LEELKGHDAQV 926 (1179)
Q Consensus 850 d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~-v~~~s~d~~~l~sgs~-dg~I~iwd~~t~~~-~~~~~~h~~~V 926 (1179)
.+..+++++.++.|++||.. +.+....+..+... ..+++++++++++++. ++.|.+||..+++. ...+..+..+.
T Consensus 9 ~~~~~v~~~~~~~v~~~d~~--~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 86 (331)
T 3u4y_A 9 SNFGIVVEQHLRRISFFSTD--TLEILNQITLGYDFVDTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSM 86 (331)
T ss_dssp CCEEEEEEGGGTEEEEEETT--TCCEEEEEECCCCEEEEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCC
T ss_pred CCEEEEEecCCCeEEEEeCc--ccceeeeEEccCCcceEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCc
Confidence 34557888889999999976 33444444433333 3467999997777665 89999999999987 77777777766
Q ss_pred EEEEEe-CCCEEEEEEcCC---eEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEE-eCCCe-EEEEeCCCCcee-
Q 001039 927 SCVRML-SGERVLTASHDG---TVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAG-GRDAV-ANIWDIRAGRQM- 999 (1179)
Q Consensus 927 ~~l~~s-~~~~l~sgs~dg---~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sg-s~dg~-I~iwD~~~~~~~- 999 (1179)
.+++|+ ++++++++..++ .|.+||+.+++.+..+.. .....+++|+|+|++++++ ..++. +.+|++.....+
T Consensus 87 ~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~ 165 (331)
T 3u4y_A 87 ADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLF 165 (331)
T ss_dssp CCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEE
T ss_pred cceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEe
Confidence 668998 677787555553 899999999998887754 4456899999999866555 45578 999998764433
Q ss_pred ---EEeecCCCCeEEEEEcCC--EE-EEEeCCCcEEEEEccCCee---eEEeecCCcCEEEEEEecCCCEEEEEe-CCCc
Q 001039 1000 ---HKFLGHTKWIRSIRMDRD--TV-ITGSDDWTARMWSISRGTC---DAVLACHAGPVQCVEYSSSDRGIITGS-SDGL 1069 (1179)
Q Consensus 1000 ---~~~~~~~~~I~sl~~~~~--~l-~sgs~dg~I~iwd~~~~~~---~~~~~~h~~~V~~l~~spdg~~l~sgs-~Dg~ 1069 (1179)
............++++++ .+ +++..++.|++||+.+++. +..+.. ...+.+++|+|||+++++++ .++.
T Consensus 166 ~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~ 244 (331)
T 3u4y_A 166 DTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVD 244 (331)
T ss_dssp EEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEE
T ss_pred ecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEEcCCCE
Confidence 122234456788888654 44 5555789999999999887 777764 46678999999999876655 5788
Q ss_pred EEEEEcCCCCcceEEEeeccc----Cce-----EEEEecCCCEEEEEEC-CCcEEEEeCCCC
Q 001039 1070 LRFWENDDAGGIKCVKNVTIH----SSA-----ILSINAGDHWLGIGAA-DNSMSLFHRPQE 1121 (1179)
Q Consensus 1070 I~iwd~~~~~~~~~~~~~~~h----~~~-----i~sis~dg~~lasgs~-Dg~I~iwd~~~~ 1121 (1179)
|.+||..++. ...+..+..+ ... -.+++|+|++|++++. ++.|.+||+...
T Consensus 245 i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 245 VFNFNQLSGT-LSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp EEEEETTTTE-EEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred EEEEECCCCc-eeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 9999998743 2223333222 111 2588999998876655 569999999754
No 144
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.81 E-value=4.7e-18 Score=193.87 Aligned_cols=262 Identities=10% Similarity=0.047 Sum_probs=195.6
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEeecCCC--cEEEEEEe-CCCEEE-EEEcCCeEEEEeCCCCeEEEEeccC-----C
Q 001039 894 GKVVSGSDDQSVLVWDKQTSQLLEELKGHDA--QVSCVRML-SGERVL-TASHDGTVKMWDVRTDTCVATVGRC-----S 964 (1179)
Q Consensus 894 ~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~--~V~~l~~s-~~~~l~-sgs~dg~I~iwd~~~~~~~~~~~~~-----~ 964 (1179)
+++++++.+++|.+||..+++.+..+..... .+..++|+ +++.++ +++.++.|.+||+.+++.+..+... .
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 4789999999999999999999888764332 47889999 565654 5556789999999999988766432 1
Q ss_pred CcEEEEEEcCCCCEEEEEe------------CCCeEEEEeCCCCceeEEeecCCCCeEEEEEcC--CEEEEEeCCCcEEE
Q 001039 965 SAVLCMEYDDSTGILAAGG------------RDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR--DTVITGSDDWTARM 1030 (1179)
Q Consensus 965 ~~v~~l~~sp~~~~l~sgs------------~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~--~~l~sgs~dg~I~i 1030 (1179)
..+.+++|+|+|+.+++++ .++.|.+||+.+++.+..+.. ...+.++++++ +.++++ ++.|++
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~ 158 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHV 158 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEE
Confidence 2567899999999998886 579999999999988877754 44567778854 467766 689999
Q ss_pred EEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCC------------------------cEEEEEcCCCCcceEEEe
Q 001039 1031 WSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDG------------------------LLRFWENDDAGGIKCVKN 1086 (1179)
Q Consensus 1031 wd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg------------------------~I~iwd~~~~~~~~~~~~ 1086 (1179)
||+.+++....+..+.. ...+.|+|+|+.++..+.++ .|.+||..++.. . ...
T Consensus 159 ~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-~-~~~ 235 (337)
T 1pby_B 159 MDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM-A-MRE 235 (337)
T ss_dssp EETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE-E-EEE
T ss_pred EECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCc-e-Eee
Confidence 99999998877764431 11237899998776554332 468999988542 2 223
Q ss_pred ecccCceE--EEEecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEE
Q 001039 1087 VTIHSSAI--LSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSG 1164 (1179)
Q Consensus 1087 ~~~h~~~i--~sis~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasg 1164 (1179)
...+...+ .+++|+|++++++ ++.|++||+.+. +....... ...+.+++|+|||++|+++
T Consensus 236 ~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~---------------~~~~~~~~-~~~~~~~~~s~dg~~l~~~ 297 (337)
T 1pby_B 236 VRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKN---------------ASIKRVPL-PHSYYSVNVSTDGSTVWLG 297 (337)
T ss_dssp EEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTT---------------EEEEEEEC-SSCCCEEEECTTSCEEEEE
T ss_pred cCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCC---------------cCcceecC-CCceeeEEECCCCCEEEEE
Confidence 33444444 5668999999988 799999998733 22222221 2357899999999999999
Q ss_pred eCCCcEEEEECCCCC
Q 001039 1165 GRNGLLRLWEATINI 1179 (1179)
Q Consensus 1165 s~Dg~I~vWdv~tg~ 1179 (1179)
+.|+.|++||+.+++
T Consensus 298 ~~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 298 GALGDLAAYDAETLE 312 (337)
T ss_dssp SBSSEEEEEETTTCC
T ss_pred cCCCcEEEEECcCCc
Confidence 999999999998874
No 145
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.81 E-value=9.6e-18 Score=191.79 Aligned_cols=240 Identities=12% Similarity=0.159 Sum_probs=171.5
Q ss_pred ecccCceEEEEeecccceeccccccCCCCEEEEEeCC-CcEEEEcCCC--CCceeEEEecccc-ccEEEEecCCCEEEEE
Q 001039 824 RGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTD-CLVKIWDPSL--RGSELRATLKGHT-RTVRAINSDRGKVVSG 899 (1179)
Q Consensus 824 ~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~D-g~I~lWd~~~--~~~~~~~~l~~h~-~~v~~~s~d~~~l~sg 899 (1179)
..|...+.+++|+ |++++|++++.+ +.|++|+++. ........+..+. ..-.++++++++++++
T Consensus 34 ~~~~~~~~~~~~s------------pdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 101 (343)
T 1ri6_A 34 VDVPGQVQPMVVS------------PDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVG 101 (343)
T ss_dssp EECSSCCCCEEEC------------TTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEE
T ss_pred EecCCCCceEEEC------------CCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEE
Confidence 3577788899987 899999988886 9999999862 2333334444333 2333679999988777
Q ss_pred eC-CCcEEEEECC---CCeEEEEeecCCCcEEEEEEe-CCCEEEEEE-cCCeEEEEeCCC-CeEEE----Eec-cCCCcE
Q 001039 900 SD-DQSVLVWDKQ---TSQLLEELKGHDAQVSCVRML-SGERVLTAS-HDGTVKMWDVRT-DTCVA----TVG-RCSSAV 967 (1179)
Q Consensus 900 s~-dg~I~iwd~~---t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs-~dg~I~iwd~~~-~~~~~----~~~-~~~~~v 967 (1179)
+. ++.|.+||+. +++....+..+ ..+.+++|+ +++.+++++ .++.|.+||+.+ ++... ... .....+
T Consensus 102 ~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~ 180 (343)
T 1ri6_A 102 SYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGP 180 (343)
T ss_dssp ETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCE
T ss_pred ecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCc
Confidence 65 8899999994 44455555543 458889999 577788777 899999999987 65432 222 234578
Q ss_pred EEEEEcCCCCEEEEEe-CCCeEEEEeCCC--Cce--eEEee---cC---CCCeEEEEEcCC--EEE-EEeCCCcEEEEEc
Q 001039 968 LCMEYDDSTGILAAGG-RDAVANIWDIRA--GRQ--MHKFL---GH---TKWIRSIRMDRD--TVI-TGSDDWTARMWSI 1033 (1179)
Q Consensus 968 ~~l~~sp~~~~l~sgs-~dg~I~iwD~~~--~~~--~~~~~---~~---~~~I~sl~~~~~--~l~-sgs~dg~I~iwd~ 1033 (1179)
.+++|+|+++++++++ .++.|.+||+.. ++. ..... .. ...+..++|+++ .++ ++..++.|.+||+
T Consensus 181 ~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~ 260 (343)
T 1ri6_A 181 RHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSV 260 (343)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEE
Confidence 8999999999776655 789999999953 433 22222 11 235667888654 555 5557999999999
Q ss_pred c--CC--eeeEEeecCCcCEEEEEEecCCCEEEEEe-CCCcEEEEEcCC
Q 001039 1034 S--RG--TCDAVLACHAGPVQCVEYSSSDRGIITGS-SDGLLRFWENDD 1077 (1179)
Q Consensus 1034 ~--~~--~~~~~~~~h~~~V~~l~~spdg~~l~sgs-~Dg~I~iwd~~~ 1077 (1179)
. ++ +.+..+..+.. +.+++|+|+|+++++++ .++.|.+|+++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~ 308 (343)
T 1ri6_A 261 SEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVG 308 (343)
T ss_dssp CTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred cCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence 8 33 44445554444 88999999999988887 689999996653
No 146
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.81 E-value=1.4e-18 Score=193.68 Aligned_cols=251 Identities=11% Similarity=0.048 Sum_probs=187.0
Q ss_pred EeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCC-CeEEEEeccC-CCcEEEEEEcCC
Q 001039 899 GSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRT-DTCVATVGRC-SSAVLCMEYDDS 975 (1179)
Q Consensus 899 gs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~-~~~~~~~~~~-~~~v~~l~~sp~ 975 (1179)
++.|++|++||+.+++... +..|...+.+++|+ +++++++++ ++.|.+||+.+ ++.......+ ...+.+++|+|+
T Consensus 18 ~~~~~~i~~~d~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd 95 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMRV-VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPD 95 (297)
T ss_dssp CCCCEEEEEEETTTTEEEE-EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTT
T ss_pred CCcceeEEEEeCCCCceee-eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCC
Confidence 4578999999999988764 45588899999999 677777765 88999999999 8777666555 367889999999
Q ss_pred CCEEEEEeC--C--CeEEEEeCCCCceeEEeecCCCCeEEEEEcCC--EEE-EEeCCCcEEEEEccC-CeeeEEeecCCc
Q 001039 976 TGILAAGGR--D--AVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD--TVI-TGSDDWTARMWSISR-GTCDAVLACHAG 1047 (1179)
Q Consensus 976 ~~~l~sgs~--d--g~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~--~l~-sgs~dg~I~iwd~~~-~~~~~~~~~h~~ 1047 (1179)
++++++++. + ..|..||..+++ ...+..+. .+..++|+++ .++ +++.++.+++|+++. +.....+..+..
T Consensus 96 g~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 173 (297)
T 2ojh_A 96 GALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEG 173 (297)
T ss_dssp SSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSS
T ss_pred CCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCC
Confidence 999999983 3 455555555554 34443333 4888888654 555 788899999998642 334456667888
Q ss_pred CEEEEEEecCCCEEEEEe-CCCcEEEEEcCCCCcceEEEeecccCceEE--EEecCCCEEEEEECC-----------CcE
Q 001039 1048 PVQCVEYSSSDRGIITGS-SDGLLRFWENDDAGGIKCVKNVTIHSSAIL--SINAGDHWLGIGAAD-----------NSM 1113 (1179)
Q Consensus 1048 ~V~~l~~spdg~~l~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~--sis~dg~~lasgs~D-----------g~I 1113 (1179)
.+.+++|+|+|++++.++ .++.+++|+++... .....+..+...+. +++|+|++|++++.+ +.|
T Consensus 174 ~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l 251 (297)
T 2ojh_A 174 RNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG--SSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRV 251 (297)
T ss_dssp CEEEEEECTTSSEEEEEECTTSSCEEEEEETTS--SCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEE
T ss_pred ccccceECCCCCEEEEEecCCCCccEEEECCCC--CCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEE
Confidence 999999999999888766 58999999987322 23344555555554 458999999988876 569
Q ss_pred EEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCC
Q 001039 1114 SLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNG 1168 (1179)
Q Consensus 1114 ~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg 1168 (1179)
++||+.+++. ..+....+|...+.+++|+|||++|++++.|.
T Consensus 252 ~~~d~~~~~~-------------~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 252 QLMDMDGGNV-------------ETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEETTSCSC-------------EEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EEEecCCCCc-------------eeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 9999874321 33334456778899999999999999887664
No 147
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.81 E-value=9.4e-19 Score=222.84 Aligned_cols=303 Identities=10% Similarity=0.077 Sum_probs=204.9
Q ss_pred cCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccc---cE--EEEecCCCEEEEEeCC---------CcEEEEECCCC
Q 001039 848 REDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTR---TV--RAINSDRGKVVSGSDD---------QSVLVWDKQTS 913 (1179)
Q Consensus 848 s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~---~v--~~~s~d~~~l~sgs~d---------g~I~iwd~~t~ 913 (1179)
+|||+++++ +.||+|++||+. +.+....+.+|.. .+ .++||||++|++++.+ +.+.+||+.++
T Consensus 25 spdg~~~~~-~~dg~i~~~d~~--~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 101 (723)
T 1xfd_A 25 ISDTEFIYR-EQKGTVRLWNVE--TNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG 101 (723)
T ss_dssp SSSSCBCCC-CSSSCEEEBCGG--GCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred cCCCcEEEE-eCCCCEEEEECC--CCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCC
Confidence 389997776 789999999976 3444556666653 23 3689999999999874 78889999988
Q ss_pred eEEEEee---cCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCc------------------EEEEE
Q 001039 914 QLLEELK---GHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSA------------------VLCME 971 (1179)
Q Consensus 914 ~~~~~~~---~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~------------------v~~l~ 971 (1179)
+. ..+. +|...+..++|+ +|+.++.++. +.|++||+.+++.......+... +.+++
T Consensus 102 ~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~ 179 (723)
T 1xfd_A 102 DP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHW 179 (723)
T ss_dssp CC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEE
T ss_pred ce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEE
Confidence 76 3333 344458889999 6778888876 79999999998877665543332 37899
Q ss_pred EcCCCCEEEEEeCC-CeEEEEeCCCCceeEEeecCCCCeEEEEEcCCEEEEEeCCCcEEEEEccCCeeeEEeecC-----
Q 001039 972 YDDSTGILAAGGRD-AVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACH----- 1045 (1179)
Q Consensus 972 ~sp~~~~l~sgs~d-g~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h----- 1045 (1179)
|+|||+.|++++.+ +.+.+|++..... .+...+..+.+...-- ...+..|++||+.+++....+..+
T Consensus 180 ~SpDg~~la~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~G~--~~~~~~l~~~d~~~~~~~~~l~~~~~~~~ 252 (723)
T 1xfd_A 180 WSPDGTRLAYAAINDSRVPIMELPTYTG-----SIYPTVKPYHYPKAGS--ENPSISLHVIGLNGPTHDLEMMPPDDPRM 252 (723)
T ss_dssp ECTTSSEEEEEEEECTTSCEEEECCCSS-----SSSCCCEEEECCBTTS--CCCEEEEEEEESSSSCCCEECCCCCCGGG
T ss_pred ECCCCCEEEEEEECCCccceEEeeccCC-----cCCCcceeccCCCCCC--CCCeeEEEEEECCCCceeEEeeCCccCCC
Confidence 99999999988754 4677777643221 1223455666532100 023458999999998866666654
Q ss_pred -CcCEEEEEEecCCCEEEEEeC----CCcEEEEEcCCCCcceEEEeecccCc------eEEEEecCCCEEEE--EECCC-
Q 001039 1046 -AGPVQCVEYSSSDRGIITGSS----DGLLRFWENDDAGGIKCVKNVTIHSS------AILSINAGDHWLGI--GAADN- 1111 (1179)
Q Consensus 1046 -~~~V~~l~~spdg~~l~sgs~----Dg~I~iwd~~~~~~~~~~~~~~~h~~------~i~sis~dg~~las--gs~Dg- 1111 (1179)
...+.+++|+|||+++++.+. ++.|++||+.++........ .+.. .-..++|||+.|+. +..++
T Consensus 253 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~--~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~ 330 (723)
T 1xfd_A 253 REYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHED--ESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGG 330 (723)
T ss_dssp SSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE--ECSSCCCCCCCCCEECTTSCSEEEEEEECCSS
T ss_pred ccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEe--ccCCEEeccCCCceEcCCCCeEEEEEecccCC
Confidence 677999999999999877653 35799999988542222211 1222 13577999997775 45666
Q ss_pred -----cEEEEe-CCCCCcCcccCCCCccccceeeeecCCCcccEE-EEEEcCCCCEEEEEeCC---CcEEEEECCC
Q 001039 1112 -----SMSLFH-RPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVR-CIASDLERKRICSGGRN---GLLRLWEATI 1177 (1179)
Q Consensus 1112 -----~I~iwd-~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~-~v~fspdg~~Lasgs~D---g~I~vWdv~t 1177 (1179)
.|++|| ..++. . .+...+..+...+. .++|||||+.|+..+.+ +.+++|+++.
T Consensus 331 ~~~~~~l~~~d~~~~~~---------~----~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 331 RGKFYHITVSSSQPNSS---------N----DNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp SSCEEEEEEECSSCCSS---------S----CCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECS
T ss_pred CcceeEEEEEeccCCCC---------c----cceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeC
Confidence 566677 33221 0 00112222223344 47999999999876655 8899999864
No 148
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.79 E-value=2.2e-17 Score=188.31 Aligned_cols=259 Identities=10% Similarity=0.070 Sum_probs=191.4
Q ss_pred CEEEEEeCCCcEEEEcCCCCCceeEEEec-cc---cccEEEEecCCCEEE-EEeCCCcEEEEECCCCeEEEEeecCC---
Q 001039 852 GFFISGSTDCLVKIWDPSLRGSELRATLK-GH---TRTVRAINSDRGKVV-SGSDDQSVLVWDKQTSQLLEELKGHD--- 923 (1179)
Q Consensus 852 ~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~-~h---~~~v~~~s~d~~~l~-sgs~dg~I~iwd~~t~~~~~~~~~h~--- 923 (1179)
+++++++.+++|++||.. +.+....+. ++ ...-.++++++++++ +++.++.|.+||+.+++.+..+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~--~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~ 79 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTE--KMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE 79 (337)
T ss_dssp EEEEEEETTTEEEEEETT--TTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred cEEEEcCCCCeEEEEECC--CCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccc
Confidence 478999999999999976 344444444 33 233447899998765 55567899999999999887776321
Q ss_pred --CcEEEEEEe-CCCEEEEEE------------cCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeE
Q 001039 924 --AQVSCVRML-SGERVLTAS------------HDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVA 988 (1179)
Q Consensus 924 --~~V~~l~~s-~~~~l~sgs------------~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I 988 (1179)
..+.+++|+ +++.+++++ .++.|.+||+.+++....+.. ...+.+++|+|++++++++ ++.|
T Consensus 80 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i 156 (337)
T 1pby_B 80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDL 156 (337)
T ss_dssp EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSE
T ss_pred ccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeE
Confidence 256778898 577888776 579999999999988877754 4567889999999988887 6889
Q ss_pred EEEeCCCCceeEEeecCC--CCeEEEEEcCCEEEEEeC-CC-----------------------cEEEEEccCCeee-EE
Q 001039 989 NIWDIRAGRQMHKFLGHT--KWIRSIRMDRDTVITGSD-DW-----------------------TARMWSISRGTCD-AV 1041 (1179)
Q Consensus 989 ~iwD~~~~~~~~~~~~~~--~~I~sl~~~~~~l~sgs~-dg-----------------------~I~iwd~~~~~~~-~~ 1041 (1179)
.+||+.+++....+..+. ..+ .+..++..++..+. ++ .|.+||+.+++.. ..
T Consensus 157 ~~~d~~~~~~~~~~~~~~~~~~~-~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~ 235 (337)
T 1pby_B 157 HVMDPEAGTLVEDKPIQSWEAET-YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMRE 235 (337)
T ss_dssp EEEETTTTEEEEEECSTTTTTTT-BCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEE
T ss_pred EEEECCCCcEeeeeeccccCCCc-eeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEee
Confidence 999999998887775443 222 22334443333322 22 4789999998764 22
Q ss_pred eecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeec-ccCceEEEEecCCCEEEEEECCCcEEEEeCCC
Q 001039 1042 LACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVT-IHSSAILSINAGDHWLGIGAADNSMSLFHRPQ 1120 (1179)
Q Consensus 1042 ~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~-~h~~~i~sis~dg~~lasgs~Dg~I~iwd~~~ 1120 (1179)
+..+...+.+++|+|+|++++++ ++.|.+||+.++ +.+..+. ++...-.+++++|+++++++.++.|.+||+.+
T Consensus 236 ~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~---~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~ 310 (337)
T 1pby_B 236 VRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKN---ASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAET 310 (337)
T ss_dssp EEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTT---EEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTT
T ss_pred cCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCC---cCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEECcC
Confidence 44566788999999999999988 799999999883 3444333 23334467789999999999999999999974
Q ss_pred C
Q 001039 1121 E 1121 (1179)
Q Consensus 1121 ~ 1121 (1179)
.
T Consensus 311 ~ 311 (337)
T 1pby_B 311 L 311 (337)
T ss_dssp C
T ss_pred C
Confidence 3
No 149
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.78 E-value=6.7e-18 Score=209.34 Aligned_cols=263 Identities=8% Similarity=-0.045 Sum_probs=197.0
Q ss_pred cceEEEEEccCCCceeeccC-c--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEeccc-CceEEEEeecccceecc
Q 001039 769 RSWVQSMFSREASSRSHSFS-R--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHA-GAITALHCVTKREVWDL 844 (1179)
Q Consensus 769 ~~i~~~~fSpdg~~las~~~-d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~-~~V~~v~~s~~~~~~~~ 844 (1179)
..+..++|||||+.+|+++. + +++|+++++. .+.+..|. ..|.+++|+
T Consensus 22 ~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~--------------------~~~lt~~~~~~~~~~~~s-------- 73 (582)
T 3o4h_A 22 VEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGE--------------------TVKLNREPINSVLDPHYG-------- 73 (582)
T ss_dssp SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTE--------------------EEECCSSCCSEECEECTT--------
T ss_pred cchheeecCCCCCeEEEEEccCCceeEEEEcCCC--------------------cEeeecccccccccccCC--------
Confidence 45788899999999999876 4 9999986554 34455555 688998887
Q ss_pred ccccCCCCEEEEEeC---CCcEEEEcCCC--CCceeEEEeccccccEEEEecCCCE-EEEEeCCCcEEEEECCCCeEEEE
Q 001039 845 VGDREDAGFFISGST---DCLVKIWDPSL--RGSELRATLKGHTRTVRAINSDRGK-VVSGSDDQSVLVWDKQTSQLLEE 918 (1179)
Q Consensus 845 ~~~s~d~~~Lasgs~---Dg~I~lWd~~~--~~~~~~~~l~~h~~~v~~~s~d~~~-l~sgs~dg~I~iwd~~t~~~~~~ 918 (1179)
|| +++++++. +...++|.++. .+... .....+...+.+++++++. +++++.++.+.+||+.+++....
T Consensus 74 ----pd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l 147 (582)
T 3o4h_A 74 ----VG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLREL 147 (582)
T ss_dssp ----CS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEE
T ss_pred ----CC-eEEEEeccCCCCcceEEEEEeccCCCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEe
Confidence 77 77887775 45566765543 23322 2222333346688999864 34444555566999999987665
Q ss_pred eecCCCcEEEEEEe-CCCEEEEEEcC----CeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCC--eEEEE
Q 001039 919 LKGHDAQVSCVRML-SGERVLTASHD----GTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDA--VANIW 991 (1179)
Q Consensus 919 ~~~h~~~V~~l~~s-~~~~l~sgs~d----g~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg--~I~iw 991 (1179)
...+. .+++|+ +|+.+++++.+ +.|++||+.+++.. .+..+...+..++|+|||+.|+++..+| .|++|
T Consensus 148 ~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~ 223 (582)
T 3o4h_A 148 ARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTV 223 (582)
T ss_dssp EEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEE
T ss_pred ecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEE
Confidence 54443 778888 79999988877 78999999988865 5667788899999999999999888888 89999
Q ss_pred eCCCCceeEEeecCCCCeEEEE--------EcC--CEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEE
Q 001039 992 DIRAGRQMHKFLGHTKWIRSIR--------MDR--DTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGI 1061 (1179)
Q Consensus 992 D~~~~~~~~~~~~~~~~I~sl~--------~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l 1061 (1179)
|+.+++.. .+.++...+..++ |++ ..+++++.||++++|++ ++... ...+.+.+++|+ +++.+
T Consensus 224 d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l 296 (582)
T 3o4h_A 224 DPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLV 296 (582)
T ss_dssp CTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEE
T ss_pred cCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEE
Confidence 99998877 7777777666666 754 48889999999999999 66544 345778999999 99999
Q ss_pred EEEeCCCc---EEEEEcC
Q 001039 1062 ITGSSDGL---LRFWEND 1076 (1179)
Q Consensus 1062 ~sgs~Dg~---I~iwd~~ 1076 (1179)
++++.+.. +.+||..
T Consensus 297 ~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 297 TSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp EEEEETTEEEEEEEETTC
T ss_pred EEEcCCCCCCeEEEEcCC
Confidence 98887754 5566554
No 150
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.78 E-value=1.3e-17 Score=185.81 Aligned_cols=243 Identities=10% Similarity=0.079 Sum_probs=183.3
Q ss_pred eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCC
Q 001039 790 VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPS 869 (1179)
Q Consensus 790 I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~ 869 (1179)
|++||+.++. ...+..|.+.|.+++|+ ||+++|++++ ++.|++||+.
T Consensus 24 i~~~d~~~~~--------------------~~~~~~~~~~v~~~~~s------------pdg~~l~~~~-~~~i~~~d~~ 70 (297)
T 2ojh_A 24 IEIFNIRTRK--------------------MRVVWQTPELFEAPNWS------------PDGKYLLLNS-EGLLYRLSLA 70 (297)
T ss_dssp EEEEETTTTE--------------------EEEEEEESSCCEEEEEC------------TTSSEEEEEE-TTEEEEEESS
T ss_pred EEEEeCCCCc--------------------eeeeccCCcceEeeEEC------------CCCCEEEEEc-CCeEEEEeCC
Confidence 9999998765 34566799999999998 8999999987 7899999986
Q ss_pred CCCceeEEEecccc-ccE--EEEecCCCEEEEEe--CCCcEEE--EECCCCeEEEEeecCCCcEEEEEEe-CCCEEE-EE
Q 001039 870 LRGSELRATLKGHT-RTV--RAINSDRGKVVSGS--DDQSVLV--WDKQTSQLLEELKGHDAQVSCVRML-SGERVL-TA 940 (1179)
Q Consensus 870 ~~~~~~~~~l~~h~-~~v--~~~s~d~~~l~sgs--~dg~I~i--wd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~-sg 940 (1179)
. .........+|. ..+ .+++++++++++++ .++...+ |+..+++ ...+..+. .+..++|+ +++.++ ++
T Consensus 71 ~-~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~ 147 (297)
T 2ojh_A 71 G-DPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPDGKSFTYCG 147 (297)
T ss_dssp S-CCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECTTSSEEEEEE
T ss_pred C-CCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECCCCCEEEEEE
Confidence 3 034444455553 344 36899999999999 3344555 4555555 34444333 48889999 677666 78
Q ss_pred EcCCeEEEEeCCC-CeEEEEeccCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEeCC-CCceeEEeecCCCCeEEEEEcC-
Q 001039 941 SHDGTVKMWDVRT-DTCVATVGRCSSAVLCMEYDDSTGILAAGG-RDAVANIWDIR-AGRQMHKFLGHTKWIRSIRMDR- 1016 (1179)
Q Consensus 941 s~dg~I~iwd~~~-~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs-~dg~I~iwD~~-~~~~~~~~~~~~~~I~sl~~~~- 1016 (1179)
+.++.+++|++.. +.....+..+...+.+++|+|+++.++.++ .++.+.+|++. .+.....+..+...+.+++|++
T Consensus 148 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~d 227 (297)
T 2ojh_A 148 IRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPS 227 (297)
T ss_dssp EETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTT
T ss_pred CCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCC
Confidence 8899999998532 233455667778899999999999888766 58899999986 5666777878888899999954
Q ss_pred -CEEEEEeCC-----------CcEEEEEccCCeee--EEeecCCcCEEEEEEecCCCEEEEEeCCC
Q 001039 1017 -DTVITGSDD-----------WTARMWSISRGTCD--AVLACHAGPVQCVEYSSSDRGIITGSSDG 1068 (1179)
Q Consensus 1017 -~~l~sgs~d-----------g~I~iwd~~~~~~~--~~~~~h~~~V~~l~~spdg~~l~sgs~Dg 1068 (1179)
+.+++++.+ +.|++||+.+++.. ..+.+|...+.+++|+|+|++|++++.+.
T Consensus 228 g~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 228 GDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp SSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred CCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 477777665 56999999888653 34447888999999999999999887654
No 151
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.77 E-value=1.9e-16 Score=182.27 Aligned_cols=265 Identities=13% Similarity=0.171 Sum_probs=179.3
Q ss_pred CCcEEEEEC--CCCeEEE-EeecCCCcEEEEEEeCCCEEEEEEc---CCeEEEEeCCCCe--EEEEeccCCCcEEEEEEc
Q 001039 902 DQSVLVWDK--QTSQLLE-ELKGHDAQVSCVRMLSGERVLTASH---DGTVKMWDVRTDT--CVATVGRCSSAVLCMEYD 973 (1179)
Q Consensus 902 dg~I~iwd~--~t~~~~~-~~~~h~~~V~~l~~s~~~~l~sgs~---dg~I~iwd~~~~~--~~~~~~~~~~~v~~l~~s 973 (1179)
++.|.+|++ .+++... ....+...+..++|+++..+++++. ++.|.+||+.+++ .+..+..+...+..++|+
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~s 94 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVD 94 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEEC
Confidence 456777655 4566543 2334556677899995443666654 6899999998776 334444466778899999
Q ss_pred CCCCEEEEEe-CCCeEEEEeCCC-C--ceeEEeecC---------CCCeEEEEEcC--CEEEEEeCCCcEEEEEcc-CCe
Q 001039 974 DSTGILAAGG-RDAVANIWDIRA-G--RQMHKFLGH---------TKWIRSIRMDR--DTVITGSDDWTARMWSIS-RGT 1037 (1179)
Q Consensus 974 p~~~~l~sgs-~dg~I~iwD~~~-~--~~~~~~~~~---------~~~I~sl~~~~--~~l~sgs~dg~I~iwd~~-~~~ 1037 (1179)
|+|+++++++ .++.+.+||+.. + +.+..+... ...+.++++++ +.+++...++.|++||+. +++
T Consensus 95 pdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~ 174 (347)
T 3hfq_A 95 EARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQ 174 (347)
T ss_dssp TTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSC
T ss_pred CCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCc
Confidence 9999888888 779999999963 3 223333221 22477888854 466666778899999998 554
Q ss_pred eeE--EeecC-CcCEEEEEEecCCCEEEE-EeCCCcEEEEEcCCC-CcceEEEeecccC------ceE--EEEecCCCEE
Q 001039 1038 CDA--VLACH-AGPVQCVEYSSSDRGIIT-GSSDGLLRFWENDDA-GGIKCVKNVTIHS------SAI--LSINAGDHWL 1104 (1179)
Q Consensus 1038 ~~~--~~~~h-~~~V~~l~~spdg~~l~s-gs~Dg~I~iwd~~~~-~~~~~~~~~~~h~------~~i--~sis~dg~~l 1104 (1179)
... .+..+ ...+..++|+|||+++++ +..++.|.+|+++.. +....+....... ..+ .+++|||++|
T Consensus 175 ~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l 254 (347)
T 3hfq_A 175 LSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFL 254 (347)
T ss_dssp EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEE
T ss_pred EEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEE
Confidence 332 22222 336788999999997665 557889999998752 2233333332222 123 5678999987
Q ss_pred -EEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCC-CcEEEE--ECCCC
Q 001039 1105 -GIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRN-GLLRLW--EATIN 1178 (1179)
Q Consensus 1105 -asgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~D-g~I~vW--dv~tg 1178 (1179)
+++..++.|.+|++... | ..........+...+.+++|+|||++|++++.+ +.|.+| |..+|
T Consensus 255 ~v~~~~~~~v~v~~~~~~--------g----~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg 320 (347)
T 3hfq_A 255 YVSNRGYNTLAVFAVTAD--------G----HLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSG 320 (347)
T ss_dssp EEEEETTTEEEEEEECGG--------G----CEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred EEEeCCCCEEEEEEECCC--------C----cEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCC
Confidence 45566899999998621 1 113444445556678899999999998888764 899999 44555
No 152
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.76 E-value=1.5e-17 Score=211.59 Aligned_cols=313 Identities=9% Similarity=0.043 Sum_probs=210.3
Q ss_pred cCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccc-----cEEEEecCCCEEEEEeC---------CCcEEEEECCCC
Q 001039 848 REDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTR-----TVRAINSDRGKVVSGSD---------DQSVLVWDKQTS 913 (1179)
Q Consensus 848 s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~-----~v~~~s~d~~~l~sgs~---------dg~I~iwd~~t~ 913 (1179)
+|||+++++ +.||+|++||+. +......+.+|.. ...++||||++|++++. +++|++||+.++
T Consensus 24 s~dg~~~~~-~~d~~i~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g 100 (719)
T 1z68_A 24 ISGQEYLHQ-SADNNIVLYNIE--TGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNG 100 (719)
T ss_dssp SSSSEEEEE-CTTSCEEEEESS--SCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT
T ss_pred CCCCeEEEE-cCCCCEEEEEcC--CCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCC
Confidence 388965555 469999999976 4444455555532 33468999999999876 789999999998
Q ss_pred eEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEe-ccCCCcE-----------------EEEEEcC
Q 001039 914 QLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATV-GRCSSAV-----------------LCMEYDD 974 (1179)
Q Consensus 914 ~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~-~~~~~~v-----------------~~l~~sp 974 (1179)
+.+.... ....+..++|+ +|+.|+.+. ++.|++||+.+++..... .++...+ .+++|+|
T Consensus 101 ~~~~~~~-l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP 178 (719)
T 1z68_A 101 EFVRGNE-LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP 178 (719)
T ss_dssp EECCSSC-CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT
T ss_pred cccccee-cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC
Confidence 7731111 12468889999 677888775 789999999988765433 2222222 4899999
Q ss_pred CCCEEEEEeCCC----------------------------------eEEEEeCCCCcee--------EEeecCCCCeEEE
Q 001039 975 STGILAAGGRDA----------------------------------VANIWDIRAGRQM--------HKFLGHTKWIRSI 1012 (1179)
Q Consensus 975 ~~~~l~sgs~dg----------------------------------~I~iwD~~~~~~~--------~~~~~~~~~I~sl 1012 (1179)
||+.|++++.|. .|++||+.+++.. ..+.+|...+.++
T Consensus 179 DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (719)
T 1z68_A 179 NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWL 258 (719)
T ss_dssp TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEE
T ss_pred CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEe
Confidence 999999987552 7899999988753 1133577889999
Q ss_pred EEcCC--EEEEEeCC----CcEEEEE----ccCCeeeEEe----ecCCcCEE-----EEEEecCCCEEEE--EeCCCc--
Q 001039 1013 RMDRD--TVITGSDD----WTARMWS----ISRGTCDAVL----ACHAGPVQ-----CVEYSSSDRGIIT--GSSDGL-- 1069 (1179)
Q Consensus 1013 ~~~~~--~l~sgs~d----g~I~iwd----~~~~~~~~~~----~~h~~~V~-----~l~~spdg~~l~s--gs~Dg~-- 1069 (1179)
+|+++ .+++.... ..|.+|| ..++++...+ .+|.+.+. .+.|+|||+.++. +..+|.
T Consensus 259 ~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~ 338 (719)
T 1z68_A 259 TWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKH 338 (719)
T ss_dssp EESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEE
T ss_pred EEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceE
Confidence 99765 44443322 2488899 8777765555 46777776 8899999996554 445664
Q ss_pred EEEEEcCCCCcceEEEeecccCceEEE--EecCCCEEEEEECC-----CcEEEEeCCCCCcCcccCCCCccccceeee-e
Q 001039 1070 LRFWENDDAGGIKCVKNVTIHSSAILS--INAGDHWLGIGAAD-----NSMSLFHRPQERLGGFSGTGSKMSGWQLYR-T 1141 (1179)
Q Consensus 1070 I~iwd~~~~~~~~~~~~~~~h~~~i~s--is~dg~~lasgs~D-----g~I~iwd~~~~~~~~~~~~g~~~~~~~~~~-~ 1141 (1179)
|.+||+.++. ...+..+...+.. .+ +++.|+..+.+ +..++|.+... .|.. ..+++. .
T Consensus 339 l~~~~~~~~~----~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~-------~g~~--~~~~l~~~ 404 (719)
T 1z68_A 339 IHYIKDTVEN----AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIG-------SYPP--SKKCVTCH 404 (719)
T ss_dssp EEEESSCSTT----CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECS-------SSSC--CEEESSTT
T ss_pred EEEEECCCCc----eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCC-------CCCC--CceeccCc
Confidence 6666765532 2233344443433 24 77777776655 88999987531 1110 001111 1
Q ss_pred cCCCcccEEEEEEcCCCCEEEE-EeCC--CcEEEEECCCCC
Q 001039 1142 PQKTVAVVRCIASDLERKRICS-GGRN--GLLRLWEATINI 1179 (1179)
Q Consensus 1142 ~~~h~~~V~~v~fspdg~~Las-gs~D--g~I~vWdv~tg~ 1179 (1179)
+.+|...+..+.|+|||++++. ++.+ ..+.+||+.+|.
T Consensus 405 ~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 405 LRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp TTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred cCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCC
Confidence 2336677889999999998774 4433 468899987763
No 153
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.76 E-value=1.5e-17 Score=211.63 Aligned_cols=313 Identities=9% Similarity=0.055 Sum_probs=214.4
Q ss_pred EEEEccCCCceeeccCc-eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccC---ceEEEEeecccceecccccc
Q 001039 773 QSMFSREASSRSHSFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAG---AITALHCVTKREVWDLVGDR 848 (1179)
Q Consensus 773 ~~~fSpdg~~las~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~---~V~~v~~s~~~~~~~~~~~s 848 (1179)
.++|||||++++++.+. |++||+.+++ ....+.+|.. .|.+++||
T Consensus 20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~-------------------~~~~~~~~~~~~~~~~~~~~S------------ 68 (719)
T 1z68_A 20 FPNWISGQEYLHQSADNNIVLYNIETGQ-------------------SYTILSNRTMKSVNASNYGLS------------ 68 (719)
T ss_dssp CCEESSSSEEEEECTTSCEEEEESSSCC-------------------EEEEECHHHHHTTTCSEEEEC------------
T ss_pred ccEECCCCeEEEEcCCCCEEEEEcCCCc-------------------EEEEEccccccccceeeEEEC------------
Confidence 56999999877776544 9999999877 5566666655 48899998
Q ss_pred CCCCEEEEEeC---------CCcEEEEcCCCCCceeE--EEeccccccEEEEecCCCEEEEEeCCCcEEEEECCCCeEEE
Q 001039 849 EDAGFFISGST---------DCLVKIWDPSLRGSELR--ATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLE 917 (1179)
Q Consensus 849 ~d~~~Lasgs~---------Dg~I~lWd~~~~~~~~~--~~l~~h~~~v~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~ 917 (1179)
|||++|++++. |++|++||+.. .+.. ..+. ....-.++||||+.|+.+. +++|++||+.+++...
T Consensus 69 pDg~~la~~~~~~~~~~~s~~~~i~~~d~~~--g~~~~~~~l~-~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~ 144 (719)
T 1z68_A 69 PDRQFVYLESDYSKLWRYSYTATYYIYDLSN--GEFVRGNELP-RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQ 144 (719)
T ss_dssp TTSSEEEEEEEEEECSSSCEEEEEEEEETTT--TEECCSSCCC-SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEE
T ss_pred CCCCeEEEEecCceeEEeecceEEEEEECCC--CccccceecC-cccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEE
Confidence 89999999876 78999999863 3221 1122 1222247899999999986 7899999999887654
Q ss_pred Ee-ecCCCcE-----------------EEEEEe-CCCEEEEEEcCC----------------------------------
Q 001039 918 EL-KGHDAQV-----------------SCVRML-SGERVLTASHDG---------------------------------- 944 (1179)
Q Consensus 918 ~~-~~h~~~V-----------------~~l~~s-~~~~l~sgs~dg---------------------------------- 944 (1179)
.. .++...+ .+++|+ +|+.|++++.|.
T Consensus 145 l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~ 224 (719)
T 1z68_A 145 ITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVV 224 (719)
T ss_dssp CCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEE
T ss_pred EecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCee
Confidence 33 2333322 479999 688899887652
Q ss_pred eEEEEeCCCCeEE--EE------eccCCCcEEEEEEcCCCCEEEEEeCC----CeEEEEe----CCCCceeEEe----ec
Q 001039 945 TVKMWDVRTDTCV--AT------VGRCSSAVLCMEYDDSTGILAAGGRD----AVANIWD----IRAGRQMHKF----LG 1004 (1179)
Q Consensus 945 ~I~iwd~~~~~~~--~~------~~~~~~~v~~l~~sp~~~~l~sgs~d----g~I~iwD----~~~~~~~~~~----~~ 1004 (1179)
.|++||+.+++.. .. +..+...+.+++|+||++++++.... ..|.+|| ..+++....+ .+
T Consensus 225 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~ 304 (719)
T 1z68_A 225 RIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEES 304 (719)
T ss_dssp EEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEEC
T ss_pred EEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEeccccc
Confidence 7889999988752 11 23577789999999998877764432 2488999 8877765444 36
Q ss_pred CCCCeE-----EEEEcC--CEEE--EEeCCC--cEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCC-----C
Q 001039 1005 HTKWIR-----SIRMDR--DTVI--TGSDDW--TARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSD-----G 1068 (1179)
Q Consensus 1005 ~~~~I~-----sl~~~~--~~l~--sgs~dg--~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~D-----g 1068 (1179)
|...+. .+.|++ +.++ ++..+| .|.+||+.+++ ...+..+...+..+.++ +++.++..+.+ +
T Consensus 305 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~ 382 (719)
T 1z68_A 305 RTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPG 382 (719)
T ss_dssp SSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTT
T ss_pred CCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCc
Confidence 666666 677754 4333 344555 57777877766 45566566678888888 88888777665 8
Q ss_pred cEEEEEcCCCCc---ceEEEe-ecccCce--EEEEecCCCEEEEE-ECC--CcEEEEeCCCCC
Q 001039 1069 LLRFWENDDAGG---IKCVKN-VTIHSSA--ILSINAGDHWLGIG-AAD--NSMSLFHRPQER 1122 (1179)
Q Consensus 1069 ~I~iwd~~~~~~---~~~~~~-~~~h~~~--i~sis~dg~~lasg-s~D--g~I~iwd~~~~~ 1122 (1179)
..++|.+..... ..++.. +.++... ..++++++++++.. +.+ ..+.+||+.+++
T Consensus 383 ~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 383 RRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp CBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred eEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCC
Confidence 899998765211 122211 1123333 35568888877754 333 468899886543
No 154
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.75 E-value=2.6e-15 Score=173.80 Aligned_cols=292 Identities=14% Similarity=0.133 Sum_probs=191.4
Q ss_pred CCCEEEEEe----CCCcEEEEcCCCCCcee--EEEeccccccEEEEecCCCEEEEEeCC----CcEEEEECCC--Ce--E
Q 001039 850 DAGFFISGS----TDCLVKIWDPSLRGSEL--RATLKGHTRTVRAINSDRGKVVSGSDD----QSVLVWDKQT--SQ--L 915 (1179)
Q Consensus 850 d~~~Lasgs----~Dg~I~lWd~~~~~~~~--~~~l~~h~~~v~~~s~d~~~l~sgs~d----g~I~iwd~~t--~~--~ 915 (1179)
+..+++.|+ .++.|.+|+++..+..+ ..........-.+++|+|++|++++.+ +.|.+|++.. ++ .
T Consensus 12 ~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~ 91 (361)
T 3scy_A 12 SELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHL 91 (361)
T ss_dssp GEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEE
T ss_pred CceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEE
Confidence 344556664 46789999875333332 223322222234789999999999886 7999998765 54 3
Q ss_pred EEEeecCCCcEEEEEEeCCCEEEEEE-cCCeEEEEeCCCCeEEEEe------cc--------CCCcEEEEEEcCCCCEEE
Q 001039 916 LEELKGHDAQVSCVRMLSGERVLTAS-HDGTVKMWDVRTDTCVATV------GR--------CSSAVLCMEYDDSTGILA 980 (1179)
Q Consensus 916 ~~~~~~h~~~V~~l~~s~~~~l~sgs-~dg~I~iwd~~~~~~~~~~------~~--------~~~~v~~l~~sp~~~~l~ 980 (1179)
+.....+......+++ +++.+++++ .++.|.+|++.....+... .+ +...+.+++|+|+|++++
T Consensus 92 ~~~~~~~~~~p~~~~~-dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~ 170 (361)
T 3scy_A 92 LNTQKTMGADPCYLTT-NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLL 170 (361)
T ss_dssp EEEEECSSSCEEEEEE-CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEE
T ss_pred eeEeccCCCCcEEEEE-CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEE
Confidence 3444545667777888 888777776 5889999999754322111 11 123468899999999776
Q ss_pred EEe-CCCeEEEEeCCCCce------e-------EEeecCCCCeEEEEEcCC--EEEEEe-CCCcEEEEEccCCee--eEE
Q 001039 981 AGG-RDAVANIWDIRAGRQ------M-------HKFLGHTKWIRSIRMDRD--TVITGS-DDWTARMWSISRGTC--DAV 1041 (1179)
Q Consensus 981 sgs-~dg~I~iwD~~~~~~------~-------~~~~~~~~~I~sl~~~~~--~l~sgs-~dg~I~iwd~~~~~~--~~~ 1041 (1179)
+++ .++.|.+|++..... + .....+......++|+++ ++++++ .++.|.+||+.+++. ...
T Consensus 171 ~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~ 250 (361)
T 3scy_A 171 ADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQT 250 (361)
T ss_dssp EEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEE
T ss_pred EEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEE
Confidence 665 478999998875431 1 112234556788999654 666666 689999999987754 222
Q ss_pred ee---cCCcCEEEEEEecCCCEEEEEeC--CCcEEEEEcCC-CCcceEEEeecc-cCceEEEEecCCCEEEEEE-CCCcE
Q 001039 1042 LA---CHAGPVQCVEYSSSDRGIITGSS--DGLLRFWENDD-AGGIKCVKNVTI-HSSAILSINAGDHWLGIGA-ADNSM 1113 (1179)
Q Consensus 1042 ~~---~h~~~V~~l~~spdg~~l~sgs~--Dg~I~iwd~~~-~~~~~~~~~~~~-h~~~i~sis~dg~~lasgs-~Dg~I 1113 (1179)
+. .+.....+++|+|||++|+++.. ++.|.+|+++. .+....+..+.. ....-.+++|+|++|++++ .++.|
T Consensus 251 ~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v 330 (361)
T 3scy_A 251 VAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVI 330 (361)
T ss_dssp EESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEE
T ss_pred EecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCE
Confidence 32 23355789999999999877665 48999999972 233444444433 2334467899999998888 67999
Q ss_pred EEEeCCCCCcCcccCCCCccccceeeeec-CCCcccEEEEEEc
Q 001039 1114 SLFHRPQERLGGFSGTGSKMSGWQLYRTP-QKTVAVVRCIASD 1155 (1179)
Q Consensus 1114 ~iwd~~~~~~~~~~~~g~~~~~~~~~~~~-~~h~~~V~~v~fs 1155 (1179)
.+|++... +| ++.... ..+...+.|++|.
T Consensus 331 ~v~~~d~~-------~g------~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 331 QIFERDQA-------TG------LLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEEEECTT-------TC------CEEECSCCEECSSEEEEEEE
T ss_pred EEEEEECC-------CC------cEeecceeeeCCCCeEEEEc
Confidence 99766522 23 121111 2344568899886
No 155
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.73 E-value=4.1e-16 Score=178.78 Aligned_cols=259 Identities=11% Similarity=0.068 Sum_probs=180.0
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCC-CcEEEEEEe-CCCEEE-EEEcCCeEEEEeCCCCeEEEEeccCC-
Q 001039 889 INSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHD-AQVSCVRML-SGERVL-TASHDGTVKMWDVRTDTCVATVGRCS- 964 (1179)
Q Consensus 889 ~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~-~~V~~l~~s-~~~~l~-sgs~dg~I~iwd~~~~~~~~~~~~~~- 964 (1179)
+++++..+++++.+++|.+||..+++.+..+..+. ..+..++|+ +++.++ ++..++.|.+||+.+++....+....
T Consensus 7 ~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~ 86 (349)
T 1jmx_B 7 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSV 86 (349)
T ss_dssp CCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCS
T ss_pred ccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccc
Confidence 56778889999999999999999999988887554 256788888 566554 55578999999999999887765332
Q ss_pred -----CcEEEEEEcCCCCEEEEEeCC------------CeEEEEeCCCCce---eEEeecCCCCeEEEEEcCC-EEEEEe
Q 001039 965 -----SAVLCMEYDDSTGILAAGGRD------------AVANIWDIRAGRQ---MHKFLGHTKWIRSIRMDRD-TVITGS 1023 (1179)
Q Consensus 965 -----~~v~~l~~sp~~~~l~sgs~d------------g~I~iwD~~~~~~---~~~~~~~~~~I~sl~~~~~-~l~sgs 1023 (1179)
..+.+++|+|+|+++++++.+ +.|.+||+.+++. +..+. +...+.+++++++ .+++++
T Consensus 87 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~l~~~~ 165 (349)
T 1jmx_B 87 PGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGSLYVAG 165 (349)
T ss_dssp TTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSCEEEES
T ss_pred cccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCcEEEcc
Confidence 236789999999999998865 8999999988543 33343 3345778888543 255554
Q ss_pred CCCcEEEEEccCCeeeEEeecCCc------------------------CEEEEEEecCCCEE-----------EEEeCCC
Q 001039 1024 DDWTARMWSISRGTCDAVLACHAG------------------------PVQCVEYSSSDRGI-----------ITGSSDG 1068 (1179)
Q Consensus 1024 ~dg~I~iwd~~~~~~~~~~~~h~~------------------------~V~~l~~spdg~~l-----------~sgs~Dg 1068 (1179)
+.|.+||..+++....+..+.. ...++++++++... .....++
T Consensus 166 --~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
T 1jmx_B 166 --PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTG 243 (349)
T ss_dssp --SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTC
T ss_pred --CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCC
Confidence 3499999999988877654320 34456666554221 1222334
Q ss_pred cEEEEEcCCCCcceEEEeecccCceEEEEec-CCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcc
Q 001039 1069 LLRFWENDDAGGIKCVKNVTIHSSAILSINA-GDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVA 1147 (1179)
Q Consensus 1069 ~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~-dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~ 1147 (1179)
.+++|+... .+....-.+++| ++++++++ ++.|.+||+.+. +...... ...
T Consensus 244 ~~~~~~~~~----------~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~---------------~~~~~~~-~~~ 295 (349)
T 1jmx_B 244 KTHTQEFAD----------LTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQR---------------KLIKAAN-LDH 295 (349)
T ss_dssp CEEEEEEEE----------CSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTT---------------EEEEEEE-CSS
T ss_pred cEEeccccc----------CCCcceeeEecCCCCCEEEEE--cCeEEEEECccC---------------eEEEEEc-CCC
Confidence 444444321 112222355689 99999988 889999999743 2222222 123
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001039 1148 VVRCIASDLERKRICSGGRNGLLRLWEATIN 1178 (1179)
Q Consensus 1148 ~V~~v~fspdg~~Lasgs~Dg~I~vWdv~tg 1178 (1179)
.+.+++|+|||++|++++.++.|++||++++
T Consensus 296 ~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 296 TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp CCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred CccceEECCCCCEEEEecCCCeEEEEecccc
Confidence 4678999999999999999999999999876
No 156
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.73 E-value=2.8e-16 Score=194.78 Aligned_cols=263 Identities=9% Similarity=-0.023 Sum_probs=186.1
Q ss_pred cccEE--EEecCCCEEEEEeC-CCcEEEEECCCCeEEEEeecCCCcEEEEEEeCCCEEEEEEc---CCeEEEEeCCC---
Q 001039 883 TRTVR--AINSDRGKVVSGSD-DQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASH---DGTVKMWDVRT--- 953 (1179)
Q Consensus 883 ~~~v~--~~s~d~~~l~sgs~-dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s~~~~l~sgs~---dg~I~iwd~~~--- 953 (1179)
..+|. ++++||++|++++. ||++.||++.+++..+....+...+..++|+++..+++++. +....+|.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~ 100 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRP 100 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETTST
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCCeEEEEeccCCCCcceEEEEEeccCC
Confidence 34455 46899999999887 99999999977766544333336899999996656666664 45455654432
Q ss_pred CeEEEEeccCCCcEEEEEEcCCCCE-EEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEE--cCCEEEEEeCC----C
Q 001039 954 DTCVATVGRCSSAVLCMEYDDSTGI-LAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM--DRDTVITGSDD----W 1026 (1179)
Q Consensus 954 ~~~~~~~~~~~~~v~~l~~sp~~~~-l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~--~~~~l~sgs~d----g 1026 (1179)
+... .+.... .+...+|+|+|+. +++.+.++.+.+||+.+++.......+. .+++| +++.+++++.+ +
T Consensus 101 g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~ 175 (582)
T 3o4h_A 101 GEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRV 175 (582)
T ss_dssp TCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEE
T ss_pred Cccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCe
Confidence 3222 333322 3446688888753 3334445556699999887655544333 45555 67799988777 7
Q ss_pred cEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCC--cEEEEEcCCCCcceEEEeecccCceE--EE------
Q 001039 1027 TARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDG--LLRFWENDDAGGIKCVKNVTIHSSAI--LS------ 1096 (1179)
Q Consensus 1027 ~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg--~I~iwd~~~~~~~~~~~~~~~h~~~i--~s------ 1096 (1179)
.|++||+.+++.. .+..|.+.+..++|||||++|++++.+| .|++||+.++. .. .+.+|...+ ..
T Consensus 176 ~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~---~~-~~~~~~~~~~~~~~~~~~~ 250 (582)
T 3o4h_A 176 SLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGS---VE-DLELPSKDFSSYRPTAITW 250 (582)
T ss_dssp EEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCC---EE-ECCCSCSHHHHHCCSEEEE
T ss_pred EEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCc---EE-EccCCCcChhhhhhccccc
Confidence 8999999888765 5677888999999999999999888888 89999998743 22 344454333 23
Q ss_pred --EecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCc---EE
Q 001039 1097 --INAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGL---LR 1171 (1179)
Q Consensus 1097 --is~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~---I~ 1171 (1179)
++|||.++++++.||++++|++ + +... .+.+.|.+++|+ ||+++++++.+.+ +.
T Consensus 251 ~~~spdg~~~~~~~~~g~~~l~~~--g---------------~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~ 309 (582)
T 3o4h_A 251 LGYLPDGRLAVVARREGRSAVFID--G---------------ERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIV 309 (582)
T ss_dssp EEECTTSCEEEEEEETTEEEEEET--T---------------EEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred eeEcCCCcEEEEEEcCCcEEEEEE--C---------------Ceec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEE
Confidence 8899999999999999999998 2 1222 223568899999 9999999888754 66
Q ss_pred EEECC
Q 001039 1172 LWEAT 1176 (1179)
Q Consensus 1172 vWdv~ 1176 (1179)
+|+..
T Consensus 310 ~~d~~ 314 (582)
T 3o4h_A 310 SLPSG 314 (582)
T ss_dssp EETTC
T ss_pred EEcCC
Confidence 66654
No 157
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.72 E-value=5.9e-16 Score=184.15 Aligned_cols=235 Identities=12% Similarity=0.084 Sum_probs=166.3
Q ss_pred CceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCC------C---ceeEE----EeccccccEE--EEecC
Q 001039 828 GAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLR------G---SELRA----TLKGHTRTVR--AINSD 892 (1179)
Q Consensus 828 ~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~------~---~~~~~----~l~~h~~~v~--~~s~d 892 (1179)
..++.++++ +++.++++|+.|| +++|+.... . ..... ....+...|. +++++
T Consensus 37 ~~~n~lavs------------~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spd 103 (434)
T 2oit_A 37 ERSSLLAVS------------NKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCD 103 (434)
T ss_dssp SCCBCEEEE------------TTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTT
T ss_pred CCccEEEEe------------cCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCC
Confidence 346778877 7899999999988 899873200 0 01100 0112445566 46899
Q ss_pred CCEEE----EEeCCCcEEEEECCCC--------e---EEEEeecCCCcEEEEEEeC--CCEEEEEEcCCeEEEEeCCCCe
Q 001039 893 RGKVV----SGSDDQSVLVWDKQTS--------Q---LLEELKGHDAQVSCVRMLS--GERVLTASHDGTVKMWDVRTDT 955 (1179)
Q Consensus 893 ~~~l~----sgs~dg~I~iwd~~t~--------~---~~~~~~~h~~~V~~l~~s~--~~~l~sgs~dg~I~iwd~~~~~ 955 (1179)
+++|+ +|+.|++|++||+.++ + .+..+.+|...|.+++|++ +..+++++.||+|++||++++.
T Consensus 104 g~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~ 183 (434)
T 2oit_A 104 NLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETV 183 (434)
T ss_dssp SCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSE
T ss_pred CCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCc
Confidence 99999 7888999999998654 2 2456678999999999994 6789999999999999999997
Q ss_pred EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCC-------CCeEEEEEcCC--EE-EEEeCC
Q 001039 956 CVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHT-------KWIRSIRMDRD--TV-ITGSDD 1025 (1179)
Q Consensus 956 ~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~-------~~I~sl~~~~~--~l-~sgs~d 1025 (1179)
.......|...|.+++|+|+|++|++|+.||.|++||++ ++....+..|. ..+.+++|+++ ++ +.++.|
T Consensus 184 ~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~d 262 (434)
T 2oit_A 184 KVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAAD 262 (434)
T ss_dssp EEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETT
T ss_pred ceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCC
Confidence 776666788899999999999999999999999999998 66655554432 37899999766 22 234445
Q ss_pred Cc------EEEEEccCCee-----eEEee-------cCCcCEEEEEEecCCCEEEEEeC-CCcEEEEEcC
Q 001039 1026 WT------ARMWSISRGTC-----DAVLA-------CHAGPVQCVEYSSSDRGIITGSS-DGLLRFWEND 1076 (1179)
Q Consensus 1026 g~------I~iwd~~~~~~-----~~~~~-------~h~~~V~~l~~spdg~~l~sgs~-Dg~I~iwd~~ 1076 (1179)
|. +++|++++.+. ...+. +...+-..+.+-++.+++++++. .+.|.+....
T Consensus 263 g~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~ 332 (434)
T 2oit_A 263 GTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQ 332 (434)
T ss_dssp CCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred CccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEec
Confidence 43 89999986521 11111 12223334445577777766654 4446666543
No 158
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.72 E-value=3.6e-15 Score=171.58 Aligned_cols=240 Identities=9% Similarity=0.067 Sum_probs=165.6
Q ss_pred ecccCceEEEEeecccceeccccccCCCCEEEEEeC---CCcEEEEcCCCCCceeEEEeccccccE--EEEecCCCEEEE
Q 001039 824 RGHAGAITALHCVTKREVWDLVGDREDAGFFISGST---DCLVKIWDPSLRGSELRATLKGHTRTV--RAINSDRGKVVS 898 (1179)
Q Consensus 824 ~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~---Dg~I~lWd~~~~~~~~~~~l~~h~~~v--~~~s~d~~~l~s 898 (1179)
..+...+..++|+ |||+ |++++. ++.|++|++.......+..+..+...+ .+++++|+++++
T Consensus 36 ~~~~~~p~~~a~s------------pdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~ 102 (347)
T 3hfq_A 36 LAATQNPTYLALS------------AKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYS 102 (347)
T ss_dssp EEECSCCCCEEEC------------TTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEE
T ss_pred eeccCCcceEEEc------------cCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEE
Confidence 4455677788887 8898 555543 689999998533333444434444333 367999999988
Q ss_pred Ee-CCCcEEEEECC-CC--eEEEEeec---------CCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCC-CCeEEE--Eec
Q 001039 899 GS-DDQSVLVWDKQ-TS--QLLEELKG---------HDAQVSCVRML-SGERVLTASHDGTVKMWDVR-TDTCVA--TVG 961 (1179)
Q Consensus 899 gs-~dg~I~iwd~~-t~--~~~~~~~~---------h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~-~~~~~~--~~~ 961 (1179)
++ .+++|.+|++. ++ +.+..+.. +...+.+++|+ +++.+++...++.|.+||+. +++... .+.
T Consensus 103 ~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~ 182 (347)
T 3hfq_A 103 ANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLT 182 (347)
T ss_dssp EETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEE
T ss_pred EeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEE
Confidence 88 77999999996 33 33333332 12348889999 56655555568899999998 554332 222
Q ss_pred c-CCCcEEEEEEcCCCCEEEE-EeCCCeEEEEeCCC--Cce--eEEeecCC------CCeEEEEEcCC--EE-EEEeCCC
Q 001039 962 R-CSSAVLCMEYDDSTGILAA-GGRDAVANIWDIRA--GRQ--MHKFLGHT------KWIRSIRMDRD--TV-ITGSDDW 1026 (1179)
Q Consensus 962 ~-~~~~v~~l~~sp~~~~l~s-gs~dg~I~iwD~~~--~~~--~~~~~~~~------~~I~sl~~~~~--~l-~sgs~dg 1026 (1179)
. ....+..++|+|+|+++++ +..++.+.+|++.. ++. +..+.... ..+..++++++ ++ +++..++
T Consensus 183 ~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~ 262 (347)
T 3hfq_A 183 MEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYN 262 (347)
T ss_dssp CCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTT
T ss_pred cCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCC
Confidence 2 3346788999999996666 45678999999874 443 22333222 35778888654 55 5666789
Q ss_pred cEEEEEccC---CeeeEEeecCCcCEEEEEEecCCCEEEEEeCC-CcEEEEEcC
Q 001039 1027 TARMWSISR---GTCDAVLACHAGPVQCVEYSSSDRGIITGSSD-GLLRFWEND 1076 (1179)
Q Consensus 1027 ~I~iwd~~~---~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~D-g~I~iwd~~ 1076 (1179)
.|.+||+.. .+.+..+..+...+.+++|+|||++|++++.+ +.|.+|+++
T Consensus 263 ~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 263 TLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp EEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 999999973 24555666667778999999999998888764 899999654
No 159
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.71 E-value=3.6e-16 Score=186.04 Aligned_cols=209 Identities=14% Similarity=0.161 Sum_probs=160.3
Q ss_pred CcEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEEEeCCCcEEEEECCCC-----------eEEE----EeecCCCc
Q 001039 861 CLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTS-----------QLLE----ELKGHDAQ 925 (1179)
Q Consensus 861 g~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~sgs~dg~I~iwd~~t~-----------~~~~----~~~~h~~~ 925 (1179)
+.+++|+.. .. +........++++++.++++++.+| +++|+.... .... ....+...
T Consensus 23 ~~vri~~~~--~~-----~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 2oit_A 23 KKVRIFDSP--EE-----LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP 94 (434)
T ss_dssp CEEECSCCC--SS-----CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred eeEEecCCc--cc-----cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence 578998743 11 2223455668899999999999988 888875311 1110 11235667
Q ss_pred EEEEEEe-CCCEEE----EEEcCCeEEEEeCCCC--------e---EEEEeccCCCcEEEEEEcCC-CCEEEEEeCCCeE
Q 001039 926 VSCVRML-SGERVL----TASHDGTVKMWDVRTD--------T---CVATVGRCSSAVLCMEYDDS-TGILAAGGRDAVA 988 (1179)
Q Consensus 926 V~~l~~s-~~~~l~----sgs~dg~I~iwd~~~~--------~---~~~~~~~~~~~v~~l~~sp~-~~~l~sgs~dg~I 988 (1179)
|.+++|+ ++++++ +|+.|++|++||+.++ + ....+.+|...|.+++|+|+ ++++++++.||.|
T Consensus 95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v 174 (434)
T 2oit_A 95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSI 174 (434)
T ss_dssp EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCE
T ss_pred ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeE
Confidence 9999999 688888 6788999999998654 2 24555678899999999997 8899999999999
Q ss_pred EEEeCCCCceeEEeecCCCCeEEEEEc--CCEEEEEeCCCcEEEEEccCCeeeEEeecC-------CcCEEEEEEecCCC
Q 001039 989 NIWDIRAGRQMHKFLGHTKWIRSIRMD--RDTVITGSDDWTARMWSISRGTCDAVLACH-------AGPVQCVEYSSSDR 1059 (1179)
Q Consensus 989 ~iwD~~~~~~~~~~~~~~~~I~sl~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h-------~~~V~~l~~spdg~ 1059 (1179)
++||++++..+....+|...|.+++|+ ++++++|+.||+|++||.+ ++....+..| ...|.+++|++++.
T Consensus 175 ~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~ 253 (434)
T 2oit_A 175 AVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYV 253 (434)
T ss_dssp EEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTE
T ss_pred EEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCce
Confidence 999999997777777889999999996 4599999999999999998 6666655443 23899999999988
Q ss_pred EEEEEe-CCCc------EEEEEcCCC
Q 001039 1060 GIITGS-SDGL------LRFWENDDA 1078 (1179)
Q Consensus 1060 ~l~sgs-~Dg~------I~iwd~~~~ 1078 (1179)
++++.+ .||. +++|++...
T Consensus 254 ~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 254 FAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred EEEEEccCCCccCCCCceEEEEeccC
Confidence 876533 4433 899999864
No 160
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.71 E-value=6.4e-15 Score=170.55 Aligned_cols=268 Identities=9% Similarity=0.104 Sum_probs=177.4
Q ss_pred CEEEEEe----CCCcEEEEEC--CCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcC----CeEEEEeCCC--CeE--EE
Q 001039 894 GKVVSGS----DDQSVLVWDK--QTSQLLEELKGHDAQVSCVRML-SGERVLTASHD----GTVKMWDVRT--DTC--VA 958 (1179)
Q Consensus 894 ~~l~sgs----~dg~I~iwd~--~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~d----g~I~iwd~~~--~~~--~~ 958 (1179)
.+++.|+ .++.|.+|++ .+++.......+......++|+ +++++++++.+ +.|.+|++.. ++. +.
T Consensus 14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~ 93 (361)
T 3scy_A 14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLN 93 (361)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEE
T ss_pred eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEee
Confidence 4555553 4568889866 5565433222266777889999 67888888875 7999998765 443 33
Q ss_pred EeccCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeEEe------ec--------CCCCeEEEEEcC--CEEEE
Q 001039 959 TVGRCSSAVLCMEYDDSTGILAAGG-RDAVANIWDIRAGRQMHKF------LG--------HTKWIRSIRMDR--DTVIT 1021 (1179)
Q Consensus 959 ~~~~~~~~v~~l~~sp~~~~l~sgs-~dg~I~iwD~~~~~~~~~~------~~--------~~~~I~sl~~~~--~~l~s 1021 (1179)
....+......+++ +++++++++ .++.+.+|++.....+... .+ +...+.++++++ +++++
T Consensus 94 ~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~ 171 (361)
T 3scy_A 94 TQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLA 171 (361)
T ss_dssp EEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEE
T ss_pred EeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEE
Confidence 33345566777888 788777766 6789999999754332211 11 122357788865 45554
Q ss_pred E-eCCCcEEEEEccCCee------e-------EEeecCCcCEEEEEEecCCCEEEEEe-CCCcEEEEEcCCCCcceEEEe
Q 001039 1022 G-SDDWTARMWSISRGTC------D-------AVLACHAGPVQCVEYSSSDRGIITGS-SDGLLRFWENDDAGGIKCVKN 1086 (1179)
Q Consensus 1022 g-s~dg~I~iwd~~~~~~------~-------~~~~~h~~~V~~l~~spdg~~l~sgs-~Dg~I~iwd~~~~~~~~~~~~ 1086 (1179)
+ ..++.|.+|++..... + .....+...+..++|+|||+++++++ .++.|.+||+.++ ....+..
T Consensus 172 ~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g-~~~~~~~ 250 (361)
T 3scy_A 172 DDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADG-MLDEIQT 250 (361)
T ss_dssp EETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETT-EEEEEEE
T ss_pred EeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCC-ceEEeEE
Confidence 4 4588999999875431 1 11223456688999999999888777 6899999999863 2333433
Q ss_pred ecccC---c--eEEEEecCCCEEEEEECC--CcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCC
Q 001039 1087 VTIHS---S--AILSINAGDHWLGIGAAD--NSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERK 1159 (1179)
Q Consensus 1087 ~~~h~---~--~i~sis~dg~~lasgs~D--g~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~ 1159 (1179)
..... . .-.+++|||++|++++.+ +.|.+|++... +|. +..+..... ...+.+++|+|||+
T Consensus 251 ~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~-------~g~----~~~~~~~~~-g~~~~~~~~spdg~ 318 (361)
T 3scy_A 251 VAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDET-------NGT----LTKVGYQLT-GIHPRNFIITPNGK 318 (361)
T ss_dssp EESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTT-------TCC----EEEEEEEEC-SSCCCEEEECTTSC
T ss_pred EecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCC-------CCc----EEEeeEecC-CCCCceEEECCCCC
Confidence 32221 2 245679999998776654 89999998621 221 122332222 45678999999999
Q ss_pred EEEEEe-CCCcEEEEECC
Q 001039 1160 RICSGG-RNGLLRLWEAT 1176 (1179)
Q Consensus 1160 ~Lasgs-~Dg~I~vWdv~ 1176 (1179)
+|++++ .++.|.+|+++
T Consensus 319 ~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 319 YLLVACRDTNVIQIFERD 336 (361)
T ss_dssp EEEEEETTTTEEEEEEEC
T ss_pred EEEEEECCCCCEEEEEEE
Confidence 988887 67899996554
No 161
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.71 E-value=2.9e-15 Score=171.69 Aligned_cols=256 Identities=11% Similarity=0.048 Sum_probs=180.2
Q ss_pred cccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEecccc---ccEEEEecCCCEEE-EEeCCCcEEEEECCCCeEEEEeec
Q 001039 846 GDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHT---RTVRAINSDRGKVV-SGSDDQSVLVWDKQTSQLLEELKG 921 (1179)
Q Consensus 846 ~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~---~~v~~~s~d~~~l~-sgs~dg~I~iwd~~t~~~~~~~~~ 921 (1179)
++++++.++++++.+++|++||.. +.+....+..+. ..-.++++++++++ ++..++.|.+||+.+++.+..+..
T Consensus 6 ~~~~~~~~~v~~~~~~~v~~~d~~--~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 6 ALKAGHEYMIVTNYPNNLHVVDVA--SDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCTTCEEEEEEETTTEEEEEETT--TTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccCCCEEEEEeCCCCeEEEEECC--CCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 345889999999999999999976 445555555443 23346899998765 455789999999999998887764
Q ss_pred CC------CcEEEEEEe-CCCEEEEEEcC------------CeEEEEeCCCCeE---EEEeccCCCcEEEEEEcCCCCEE
Q 001039 922 HD------AQVSCVRML-SGERVLTASHD------------GTVKMWDVRTDTC---VATVGRCSSAVLCMEYDDSTGIL 979 (1179)
Q Consensus 922 h~------~~V~~l~~s-~~~~l~sgs~d------------g~I~iwd~~~~~~---~~~~~~~~~~v~~l~~sp~~~~l 979 (1179)
+. ..+.+++|+ +++++++++.+ +.|.+||+.+++. +.... +...+.+++|+|+|+ +
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l 161 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-L 161 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-E
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-E
Confidence 32 236788898 67788888865 9999999988543 33333 334688999999999 6
Q ss_pred EEEeCCCeEEEEeCCCCceeEEeecCCC------------------------CeEEEEEcCC-------------EEEEE
Q 001039 980 AAGGRDAVANIWDIRAGRQMHKFLGHTK------------------------WIRSIRMDRD-------------TVITG 1022 (1179)
Q Consensus 980 ~sgs~dg~I~iwD~~~~~~~~~~~~~~~------------------------~I~sl~~~~~-------------~l~sg 1022 (1179)
++++. .|.+||..+++.+..+..+.. ....+++.++ ++...
T Consensus 162 ~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 239 (349)
T 1jmx_B 162 YVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 239 (349)
T ss_dssp EEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred EEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEe
Confidence 56543 499999999988877654320 1223333211 11122
Q ss_pred eCCCcEEEEEccCCeeeEEeecCCcCEEEEEEec-CCCEEEEEeCCCcEEEEEcCCCCcceEEEeec-ccCceEEEEecC
Q 001039 1023 SDDWTARMWSISRGTCDAVLACHAGPVQCVEYSS-SDRGIITGSSDGLLRFWENDDAGGIKCVKNVT-IHSSAILSINAG 1100 (1179)
Q Consensus 1023 s~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~-~h~~~i~sis~d 1100 (1179)
..++.+++|+. ..+...+.+++++| +|++++++ ++.|.+||+.++ +.+..+. ++...-.+++++
T Consensus 240 ~~~~~~~~~~~---------~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~---~~~~~~~~~~~~~~~~~s~d 305 (349)
T 1jmx_B 240 LKTGKTHTQEF---------ADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQR---KLIKAANLDHTYYCVAFDKK 305 (349)
T ss_dssp TTTCCEEEEEE---------EECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTT---EEEEEEECSSCCCEEEECSS
T ss_pred ccCCcEEeccc---------ccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccC---eEEEEEcCCCCccceEECCC
Confidence 23344444443 23566789999999 99999988 889999999883 4433332 333445677899
Q ss_pred CCEEEEEECCCcEEEEeCCCC
Q 001039 1101 DHWLGIGAADNSMSLFHRPQE 1121 (1179)
Q Consensus 1101 g~~lasgs~Dg~I~iwd~~~~ 1121 (1179)
|++|++++.++.|++||+.+.
T Consensus 306 g~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 306 GDKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp SSCEEEESBSSEEEEEETTTT
T ss_pred CCEEEEecCCCeEEEEecccc
Confidence 999998888999999999743
No 162
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.71 E-value=2.8e-15 Score=175.08 Aligned_cols=285 Identities=12% Similarity=0.036 Sum_probs=196.7
Q ss_pred ceeEEEeccccccEE-------EEecCCCEEEEEeC-CC--cEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEE
Q 001039 873 SELRATLKGHTRTVR-------AINSDRGKVVSGSD-DQ--SVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTAS 941 (1179)
Q Consensus 873 ~~~~~~l~~h~~~v~-------~~s~d~~~l~sgs~-dg--~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs 941 (1179)
......+..|..... +++|||++|+.++. +| .|.+||+.+++......++...+..+.|+ +++.|+.++
T Consensus 20 g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~ 99 (388)
T 3pe7_A 20 GAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVK 99 (388)
T ss_dssp CCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEE
T ss_pred CcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEe
Confidence 334456666665544 47999999999987 66 48889999998887777776666567788 788999999
Q ss_pred cCCeEEEEeCCCCeEEEEeccCCCcEEEEE--EcCCCCEEEEEe----------------------CCCeEEEEeCCCCc
Q 001039 942 HDGTVKMWDVRTDTCVATVGRCSSAVLCME--YDDSTGILAAGG----------------------RDAVANIWDIRAGR 997 (1179)
Q Consensus 942 ~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~--~sp~~~~l~sgs----------------------~dg~I~iwD~~~~~ 997 (1179)
.++.|.+||+.+++.......+...+.... ++++++.++... .++.|.+||+.+++
T Consensus 100 ~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~ 179 (388)
T 3pe7_A 100 DGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE 179 (388)
T ss_dssp TTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC
T ss_pred CCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc
Confidence 999999999999987766665555554443 489999887432 34689999999886
Q ss_pred eeEEeecCCCCeEEEEEcC-C--EEEEEeCC------CcEEEEEccCCeeeEEeecCC--cCEEEEEEecCCCEEEEEeC
Q 001039 998 QMHKFLGHTKWIRSIRMDR-D--TVITGSDD------WTARMWSISRGTCDAVLACHA--GPVQCVEYSSSDRGIITGSS 1066 (1179)
Q Consensus 998 ~~~~~~~~~~~I~sl~~~~-~--~l~sgs~d------g~I~iwd~~~~~~~~~~~~h~--~~V~~l~~spdg~~l~sgs~ 1066 (1179)
.. .+..+...+..+.|++ + .++.++.+ ..|.++|...+.. ..+..+. ..+...+|+|||+.|+..+.
T Consensus 180 ~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~ 257 (388)
T 3pe7_A 180 ST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSY 257 (388)
T ss_dssp EE-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEE
T ss_pred eE-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEec
Confidence 54 4445666788888877 4 66666543 3788888766544 3444344 35788999999998866543
Q ss_pred -CC----cEEEEEcCCCCcceEEEeecccCce-----EEEEecCCCEEEEE---------ECCCcEEEEeCCCCCcCccc
Q 001039 1067 -DG----LLRFWENDDAGGIKCVKNVTIHSSA-----ILSINAGDHWLGIG---------AADNSMSLFHRPQERLGGFS 1127 (1179)
Q Consensus 1067 -Dg----~I~iwd~~~~~~~~~~~~~~~h~~~-----i~sis~dg~~lasg---------s~Dg~I~iwd~~~~~~~~~~ 1127 (1179)
++ .|++||+.++. .+.+....++... -..++|||+.|+.. ..+..|++||+.+++.
T Consensus 258 ~~~~~~~~l~~~d~~~g~-~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~---- 332 (388)
T 3pe7_A 258 LKGSPDRFIYSADPETLE-NRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ---- 332 (388)
T ss_dssp ETTCCCEEEEEECTTTCC-EEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE----
T ss_pred CCCCCcceEEEEecCCCc-eEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce----
Confidence 22 39999998854 3444444331111 12578999988854 4567899999974322
Q ss_pred CCCCccccceeeeecCCCcc-----------cEEEEEEcCCCCEEEEEe-CCCcEEEEECC
Q 001039 1128 GTGSKMSGWQLYRTPQKTVA-----------VVRCIASDLERKRICSGG-RNGLLRLWEAT 1176 (1179)
Q Consensus 1128 ~~g~~~~~~~~~~~~~~h~~-----------~V~~v~fspdg~~Lasgs-~Dg~I~vWdv~ 1176 (1179)
..+..|.. .+.+++|+|||+.|+.++ .+|...||.++
T Consensus 333 ------------~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 333 ------------HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp ------------EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ------------EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 11222222 477889999999888765 57777777653
No 163
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.70 E-value=3.3e-15 Score=190.64 Aligned_cols=318 Identities=9% Similarity=0.051 Sum_probs=207.1
Q ss_pred ceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEecccccc-----E--EEEecCCCEEEEEeC
Q 001039 829 AITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRT-----V--RAINSDRGKVVSGSD 901 (1179)
Q Consensus 829 ~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~-----v--~~~s~d~~~l~sgs~ 901 (1179)
...+++|+ +||++++++ ||+|++||+.. ......+.+|... . .++||||++|+.++.
T Consensus 18 ~~~~~~w~------------~dg~~~~~~--~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~ 81 (740)
T 4a5s_A 18 KLYSLRWI------------SDHEYLYKQ--ENNILVFNAEY--GNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYN 81 (740)
T ss_dssp CCCCEEEC------------SSSEEEEEE--TTEEEEEETTT--CCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEE
T ss_pred cccccEEC------------CCCcEEEEc--CCcEEEEECCC--CceEEEEechhhhhhcccccceEECCCCCEEEEEEC
Confidence 34567777 899999987 99999999873 3344556666532 2 467999999999987
Q ss_pred C---------CcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEec-cCCCcE---
Q 001039 902 D---------QSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVG-RCSSAV--- 967 (1179)
Q Consensus 902 d---------g~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~-~~~~~v--- 967 (1179)
+ +.+.+||+.+++.. .+..+...+...+|+ +|+.|+.+ .++.|.+||..+++..+... ++...+
T Consensus 82 ~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g 159 (740)
T 4a5s_A 82 YVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNG 159 (740)
T ss_dssp EEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEES
T ss_pred CeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecC
Confidence 6 56779999999864 466677889999999 67778777 57899999999887554322 222222
Q ss_pred --------------EEEEEcCCCCEEEEEeCCC------------------------------------eEEEEeCCC--
Q 001039 968 --------------LCMEYDDSTGILAAGGRDA------------------------------------VANIWDIRA-- 995 (1179)
Q Consensus 968 --------------~~l~~sp~~~~l~sgs~dg------------------------------------~I~iwD~~~-- 995 (1179)
..+.|||||+.|+.++.|. .|++||+.+
T Consensus 160 ~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~ 239 (740)
T 4a5s_A 160 ITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLS 239 (740)
T ss_dssp BCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCC
T ss_pred cccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCC
Confidence 3489999999999875321 588899988
Q ss_pred -Cc--eeEEee------cCCCCeEEEEEcCC--EEEEEe----CCCcEEEEEccCCe----eeE--Ee--ecCCcCEE--
Q 001039 996 -GR--QMHKFL------GHTKWIRSIRMDRD--TVITGS----DDWTARMWSISRGT----CDA--VL--ACHAGPVQ-- 1050 (1179)
Q Consensus 996 -~~--~~~~~~------~~~~~I~sl~~~~~--~l~sgs----~dg~I~iwd~~~~~----~~~--~~--~~h~~~V~-- 1050 (1179)
++ ....+. ++...+..++|+++ .++... .+..|++||+.+++ +.. .+ .+|.+.|.
T Consensus 240 ~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~ 319 (740)
T 4a5s_A 240 SVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRF 319 (740)
T ss_dssp SSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSS
T ss_pred CCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccC
Confidence 73 233343 37778899999654 444443 23479999999887 221 11 44666554
Q ss_pred ---EEEEecCCCEEE-EEe-CCC--cEEEEEcCCCCcceEEEeecccCceEEEE-ecCCCEEEEEECC-----CcEEEEe
Q 001039 1051 ---CVEYSSSDRGII-TGS-SDG--LLRFWENDDAGGIKCVKNVTIHSSAILSI-NAGDHWLGIGAAD-----NSMSLFH 1117 (1179)
Q Consensus 1051 ---~l~~spdg~~l~-sgs-~Dg--~I~iwd~~~~~~~~~~~~~~~h~~~i~si-s~dg~~lasgs~D-----g~I~iwd 1117 (1179)
..+|+|||+.++ ..+ .+| .|++||..++. .. .+......+..+ .+|++.|+..+.. +...||.
T Consensus 320 ~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~-~~---~lT~g~~~v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~ 395 (740)
T 4a5s_A 320 RPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD-CT---FITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYK 395 (740)
T ss_dssp SCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS-CE---ESCCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEE
T ss_pred cCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc-eE---ecccCCEEEEEEEEEeCCEEEEEEecCCCCCceeEEEE
Confidence 789999999877 665 344 57788887632 22 222333344433 4667766655443 3445554
Q ss_pred CCCCCcCcccCCCCccccceeeee-cCCCcccEEEEEEcCCCCEEEEEeCC---CcEEEEECCCC
Q 001039 1118 RPQERLGGFSGTGSKMSGWQLYRT-PQKTVAVVRCIASDLERKRICSGGRN---GLLRLWEATIN 1178 (1179)
Q Consensus 1118 ~~~~~~~~~~~~g~~~~~~~~~~~-~~~h~~~V~~v~fspdg~~Lasgs~D---g~I~vWdv~tg 1178 (1179)
+... .+ .. -.++.. ..+....+..+.|||||++++..... ..+.+++..++
T Consensus 396 v~~~-------g~-~~--~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~ 450 (740)
T 4a5s_A 396 IQLI-------DY-TK--VTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVND 450 (740)
T ss_dssp EETT-------EE-EE--EEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTT
T ss_pred EECC-------CC-Cc--ceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCC
Confidence 4311 11 00 001110 11234568899999999987654332 35777777654
No 164
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.68 E-value=2.7e-15 Score=175.16 Aligned_cols=280 Identities=10% Similarity=-0.007 Sum_probs=187.6
Q ss_pred CcccccCCcceEE-----EEEccCCCceeeccC-c----eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCce
Q 001039 761 PAEASGIGRSWVQ-----SMFSREASSRSHSFS-R----VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAI 830 (1179)
Q Consensus 761 ~~~~~gh~~~i~~-----~~fSpdg~~las~~~-d----I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V 830 (1179)
...+..|...... .+|||||++++.++. + |.+||+++++ ..+...+|...+
T Consensus 23 ~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~-------------------~~~lt~~~~~~~ 83 (388)
T 3pe7_A 23 VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQV-------------------ATQLTEGRGDNT 83 (388)
T ss_dssp EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCE-------------------EEECCCSSCBCS
T ss_pred eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCc-------------------eEEeeeCCCCCc
Confidence 3444445444444 689999999998876 3 7888888766 445556666666
Q ss_pred EEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEE----EEecCCCEEEEE-------
Q 001039 831 TALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR----AINSDRGKVVSG------- 899 (1179)
Q Consensus 831 ~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~----~~s~d~~~l~sg------- 899 (1179)
.+++|+ |||+.|+.++.++.|++||+... +.......+...+. .+++++..++..
T Consensus 84 ~~~~~s------------pdg~~l~~~~~~~~l~~~d~~~g--~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~ 149 (388)
T 3pe7_A 84 FGGFLS------------PDDDALFYVKDGRNLMRVDLATL--EENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDW 149 (388)
T ss_dssp SSCEEC------------TTSSEEEEEETTTEEEEEETTTC--CEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGC
T ss_pred cceEEc------------CCCCEEEEEeCCCeEEEEECCCC--cceeeeechhhcccccceeECCCCCeeccccccCccc
Confidence 566777 89999999999999999998743 33333444444332 347899988743
Q ss_pred ---------------eCCCcEEEEECCCCeEEEEeecCCCcEEEEEEeC--CCEEEEEEcC------CeEEEEeCCCCeE
Q 001039 900 ---------------SDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLS--GERVLTASHD------GTVKMWDVRTDTC 956 (1179)
Q Consensus 900 ---------------s~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s~--~~~l~sgs~d------g~I~iwd~~~~~~ 956 (1179)
+.++.|.+||+.+++... +..+...+..+.|++ ++.++.++.+ ..|.++|..+++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~ 228 (388)
T 3pe7_A 150 VPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM 228 (388)
T ss_dssp CCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC
T ss_pred ccccccchhhhhhccCCcceEEEEECCCCceEE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce
Confidence 244789999999987644 444667789999986 5567666653 3788888876654
Q ss_pred EEEeccCC--CcEEEEEEcCCCCEEEEEeC-CC----eEEEEeCCCCceeE--EeecCCC-----CeEEEEEcCCEEEEE
Q 001039 957 VATVGRCS--SAVLCMEYDDSTGILAAGGR-DA----VANIWDIRAGRQMH--KFLGHTK-----WIRSIRMDRDTVITG 1022 (1179)
Q Consensus 957 ~~~~~~~~--~~v~~l~~sp~~~~l~sgs~-dg----~I~iwD~~~~~~~~--~~~~~~~-----~I~sl~~~~~~l~sg 1022 (1179)
. .+..+. ..+...+|+|+|+.|+..+. ++ .|++||+.+++... .+.++.. .-..++.+++.++..
T Consensus 229 ~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~ 307 (388)
T 3pe7_A 229 R-KVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVD 307 (388)
T ss_dssp E-ESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC---
T ss_pred E-EeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeE
Confidence 3 343333 35788999999998765443 22 39999999887432 3322100 001344456655543
Q ss_pred ---------eCCCcEEEEEccCCeeeEEeecCCc-----------CEEEEEEecCCCEEEEEe-CCCcEEEEEcC
Q 001039 1023 ---------SDDWTARMWSISRGTCDAVLACHAG-----------PVQCVEYSSSDRGIITGS-SDGLLRFWEND 1076 (1179)
Q Consensus 1023 ---------s~dg~I~iwd~~~~~~~~~~~~h~~-----------~V~~l~~spdg~~l~sgs-~Dg~I~iwd~~ 1076 (1179)
..+..|++||+.+++.. .+..+.. .+.+++|+|||+.|+.++ .+|...+|.++
T Consensus 308 ~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 308 VQDDSGYKIENDPFLYVFNMKNGTQH-RVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp ---------CCCCEEEEEETTTTEEE-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred eeeccccccCCCCEEEEEeccCCceE-EeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 45678999999987753 4444555 578899999999888766 46777777654
No 165
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.65 E-value=1.6e-14 Score=167.40 Aligned_cols=264 Identities=10% Similarity=0.088 Sum_probs=190.1
Q ss_pred cCCCEEEEEe------CCCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEE----------cCCeEEEEeCCC
Q 001039 891 SDRGKVVSGS------DDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTAS----------HDGTVKMWDVRT 953 (1179)
Q Consensus 891 ~d~~~l~sgs------~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs----------~dg~I~iwd~~~ 953 (1179)
++++++++.. .|+.|.+||..+++.+..+..+..+ .++++ +++++++++ .++.|.+||..+
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t 90 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK 90 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC
Confidence 3556666553 3789999999999999888876555 88999 678888876 367899999999
Q ss_pred CeEEEEeccC------CCcEEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCceeEE-eecCCCCeEEEEEc---CCEEEE
Q 001039 954 DTCVATVGRC------SSAVLCMEYDDSTGILAAGGR--DAVANIWDIRAGRQMHK-FLGHTKWIRSIRMD---RDTVIT 1021 (1179)
Q Consensus 954 ~~~~~~~~~~------~~~v~~l~~sp~~~~l~sgs~--dg~I~iwD~~~~~~~~~-~~~~~~~I~sl~~~---~~~l~s 1021 (1179)
++.+.++... ......++++|+|++++++.. ++.|.+||+.+++.+.. +.... ...+.+. +..+++
T Consensus 91 ~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~--~~~v~~~p~~~~~~~~ 168 (361)
T 2oiz_A 91 LTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG--CWSVIPQPNRPRSFMT 168 (361)
T ss_dssp CCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT--EEEEEECTTSSSEEEE
T ss_pred CcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC--cceeEEcCCCCeeEEE
Confidence 9988877532 234677999999999998874 57999999999988877 54322 1223332 247888
Q ss_pred EeCCCcEEEEEccC-CeeeEE------eecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecc-----
Q 001039 1022 GSDDWTARMWSISR-GTCDAV------LACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTI----- 1089 (1179)
Q Consensus 1022 gs~dg~I~iwd~~~-~~~~~~------~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~----- 1089 (1179)
.+.||.+.+|+... ++.... +..+..++ .+.+++++..++..+.++.|.+||+.... ......+..
T Consensus 169 ~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~-~~~~~~~~~~~~~~ 246 (361)
T 2oiz_A 169 ICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDE-VKVDGPWSLLNDED 246 (361)
T ss_dssp EETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSS-CEEEEEEESCCHHH
T ss_pred ECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCC-ceecccccccCccc
Confidence 99999999999865 554422 11222222 33447788888888889999999987633 222222111
Q ss_pred -------cCceEEEEecCCCEEEEEEC-----------CCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEE
Q 001039 1090 -------HSSAILSINAGDHWLGIGAA-----------DNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRC 1151 (1179)
Q Consensus 1090 -------h~~~i~sis~dg~~lasgs~-----------Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~ 1151 (1179)
......+++++++.++++.. ++.|.+||+.+. +.+.++..+. +.+
T Consensus 247 ~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~---------------~~v~~i~~~~--p~~ 309 (361)
T 2oiz_A 247 KAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK---------------QRVARIPGRD--ALS 309 (361)
T ss_dssp HHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT---------------EEEEEEECTT--CCE
T ss_pred cccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC---------------cEEEEEecCC--eeE
Confidence 11223678999888877653 358999998743 4555555555 899
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001039 1152 IASDLERKRICSGGRNGLLRLWEATIN 1178 (1179)
Q Consensus 1152 v~fspdg~~Lasgs~Dg~I~vWdv~tg 1178 (1179)
++|+|||++|++++. ++|.+||..|+
T Consensus 310 ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 310 MTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp EEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred EEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 999999999999887 99999999987
No 166
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.65 E-value=1.5e-14 Score=168.10 Aligned_cols=271 Identities=10% Similarity=0.061 Sum_probs=178.9
Q ss_pred EEEEEeCC--CcEEEEEC--CCCeEEE--Eee-cCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCC-CCeEEEEecc-CC
Q 001039 895 KVVSGSDD--QSVLVWDK--QTSQLLE--ELK-GHDAQVSCVRML-SGERVLTASHDGTVKMWDVR-TDTCVATVGR-CS 964 (1179)
Q Consensus 895 ~l~sgs~d--g~I~iwd~--~t~~~~~--~~~-~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~-~~~~~~~~~~-~~ 964 (1179)
++++|+.. +.|.+|++ .+++... ... .....+..++++ +++++++++.+ .|.+||+. +++....... ..
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 45566543 56877664 5665432 221 233467789998 67788888887 99999997 7776543321 11
Q ss_pred CcEEEEEEcCCCCE--EEEEe-------------CCCeEEEEeCC-CCceeEEee----cCCCCeEEEEEcCC--EEEEE
Q 001039 965 SAVLCMEYDDSTGI--LAAGG-------------RDAVANIWDIR-AGRQMHKFL----GHTKWIRSIRMDRD--TVITG 1022 (1179)
Q Consensus 965 ~~v~~l~~sp~~~~--l~sgs-------------~dg~I~iwD~~-~~~~~~~~~----~~~~~I~sl~~~~~--~l~sg 1022 (1179)
+...+++++|+|++ +++++ .+|.+.+|++. +++....+. .+...+.+++|+++ +++++
T Consensus 83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~ 162 (365)
T 1jof_A 83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA 162 (365)
T ss_dssp SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE
Confidence 23556899999994 44543 68999999997 466544433 24567889999654 67666
Q ss_pred e-CCCcEEEEEcc-CCeee--EEee--cCCcCEEEEEEecCCCEEEEEeC-CCcEEEEEcCCC-Ccce----EEEeec--
Q 001039 1023 S-DDWTARMWSIS-RGTCD--AVLA--CHAGPVQCVEYSSSDRGIITGSS-DGLLRFWENDDA-GGIK----CVKNVT-- 1088 (1179)
Q Consensus 1023 s-~dg~I~iwd~~-~~~~~--~~~~--~h~~~V~~l~~spdg~~l~sgs~-Dg~I~iwd~~~~-~~~~----~~~~~~-- 1088 (1179)
+ .++.|++||+. +++.. ..+. .|...+..++|+|||+++++++. ++.|.+|+++.. +... .+..+.
T Consensus 163 ~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 242 (365)
T 1jof_A 163 DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPG 242 (365)
T ss_dssp ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTT
T ss_pred cCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCC
Confidence 5 46899999998 67643 2333 24567999999999999988775 789999987631 2121 122222
Q ss_pred --ccC--------ceEEE-EecCCCEEEEEECCC------cEEEEeCCCCCcCcccCCCCccccceeee-ecCCCcccEE
Q 001039 1089 --IHS--------SAILS-INAGDHWLGIGAADN------SMSLFHRPQERLGGFSGTGSKMSGWQLYR-TPQKTVAVVR 1150 (1179)
Q Consensus 1089 --~h~--------~~i~s-is~dg~~lasgs~Dg------~I~iwd~~~~~~~~~~~~g~~~~~~~~~~-~~~~h~~~V~ 1150 (1179)
+|. ..-.+ ++|||++|++++.+. +|.+|++.. +|. + .... ....+...+.
T Consensus 243 ~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~--------~g~-~---~~~~~~~~~~~~~~~ 310 (365)
T 1jof_A 243 IPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRD--------CGS-I---EKQLFLSPTPTSGGH 310 (365)
T ss_dssp CCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECT--------TSC-E---EEEEEEEECSSCCTT
T ss_pred cCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECC--------CCC-E---EEeeeeeecCCCCcc
Confidence 222 22356 789999988776432 899999852 121 0 1111 1222334456
Q ss_pred EEEEcC---CCCEEEEEeCC-CcEEEEECCCC
Q 001039 1151 CIASDL---ERKRICSGGRN-GLLRLWEATIN 1178 (1179)
Q Consensus 1151 ~v~fsp---dg~~Lasgs~D-g~I~vWdv~tg 1178 (1179)
.++|+| ||++|++++.+ ++|.+|+++.+
T Consensus 311 ~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 311 SNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp CCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred cceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 789999 89999999865 89999998653
No 167
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.64 E-value=7.5e-15 Score=171.57 Aligned_cols=283 Identities=9% Similarity=-0.030 Sum_probs=184.0
Q ss_pred ccCCCCEEEEEeCC---CcEEEEcCCCCCceeEEEeccccccE--EEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeec
Q 001039 847 DREDAGFFISGSTD---CLVKIWDPSLRGSELRATLKGHTRTV--RAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKG 921 (1179)
Q Consensus 847 ~s~d~~~Lasgs~D---g~I~lWd~~~~~~~~~~~l~~h~~~v--~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~ 921 (1179)
+||||++|+.++.+ ..|.+||+. +.+......++.... ..++|||++|+.++.++.|++||+.+++.......
T Consensus 43 ~SpdG~~l~~~~~~~g~~~l~~~d~~--~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~ 120 (396)
T 3c5m_A 43 FTQDGKKLLFAGDFDGNRNYYLLNLE--TQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTV 120 (396)
T ss_dssp BCTTSCEEEEEECTTSSCEEEEEETT--TTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred CCCCCCEEEEEEecCCCceEEEEECC--CCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEec
Confidence 34999998877653 368888865 344333333332222 46899999999999999999999999887666554
Q ss_pred CCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEE-----eCCCeEEEEeCCC
Q 001039 922 HDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAG-----GRDAVANIWDIRA 995 (1179)
Q Consensus 922 h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sg-----s~dg~I~iwD~~~ 995 (1179)
+.. |+ ++..++..+.++...+|+ ..+.++|+++.++.+ ..+..|.+||+.+
T Consensus 121 ~~~------~~~~g~~l~~~~~~~~~~~~~-----------------~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~ 177 (396)
T 3c5m_A 121 DEE------WKGYGTWVANSDCTKLVGIEI-----------------LKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIET 177 (396)
T ss_dssp CTT------EEEEEEEEECTTSSEEEEEEE-----------------EGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTT
T ss_pred ccc------cCCCCCEEEeccCCccccccc-----------------cccccCCCCcceeeeeeccCCCcceEEEEECCC
Confidence 443 33 344555544444444442 124578888877654 3567899999998
Q ss_pred CceeEEeecCCCCeEEEEEcC-C--EEEEEeCC------CcEEEEEccCCeeeEEeecC-CcCEEEEEEecCCCEEEEEe
Q 001039 996 GRQMHKFLGHTKWIRSIRMDR-D--TVITGSDD------WTARMWSISRGTCDAVLACH-AGPVQCVEYSSSDRGIITGS 1065 (1179)
Q Consensus 996 ~~~~~~~~~~~~~I~sl~~~~-~--~l~sgs~d------g~I~iwd~~~~~~~~~~~~h-~~~V~~l~~spdg~~l~sgs 1065 (1179)
++..... .+...+..+.|++ + .++..+.+ ..|.+||+.+++........ ...+..++|+|||++|+.++
T Consensus 178 g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~ 256 (396)
T 3c5m_A 178 GELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVS 256 (396)
T ss_dssp CCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEE
T ss_pred CcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEe
Confidence 8765444 5566788888876 3 46555543 46888998766543333211 23588899999999887776
Q ss_pred CC-----CcEEEEEcCCCCcceEEEeecccCceEEEEec-CCCEEEEEE----------------CCCcEEEEeCCCCCc
Q 001039 1066 SD-----GLLRFWENDDAGGIKCVKNVTIHSSAILSINA-GDHWLGIGA----------------ADNSMSLFHRPQERL 1123 (1179)
Q Consensus 1066 ~D-----g~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~-dg~~lasgs----------------~Dg~I~iwd~~~~~~ 1123 (1179)
.+ +.|++||+.++. ...+....++. ..+++ +|+++++++ .++.|++||+.+++.
T Consensus 257 ~~~~~~~~~l~~~d~~~g~-~~~l~~~~~~~---~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (396)
T 3c5m_A 257 YFKGQTDRVIYKANPETLE-NEEVMVMPPCS---HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA 332 (396)
T ss_dssp EETTTCCEEEEEECTTTCC-EEEEEECCSEE---EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC
T ss_pred cCCCCccceEEEEECCCCC-eEEeeeCCCCC---CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce
Confidence 54 449999998743 33333333322 66788 999988765 347899999874422
Q ss_pred CcccCCCCccccceeeeecCCCcc-----------cEEEEEEcCCCCEEEEEeC-CCcEEEEEC
Q 001039 1124 GGFSGTGSKMSGWQLYRTPQKTVA-----------VVRCIASDLERKRICSGGR-NGLLRLWEA 1175 (1179)
Q Consensus 1124 ~~~~~~g~~~~~~~~~~~~~~h~~-----------~V~~v~fspdg~~Lasgs~-Dg~I~vWdv 1175 (1179)
. . +..+.. .+..++|+|||+.|+.++. ++...+|.+
T Consensus 333 ~-------------~---l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 333 Q-------------K---LCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp C-------------E---EEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred E-------------E---ccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 1 1 111221 2456789999999887764 566555544
No 168
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.62 E-value=3.2e-13 Score=156.47 Aligned_cols=290 Identities=11% Similarity=0.056 Sum_probs=199.8
Q ss_pred CCCCEEEEEe------CCCcEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEEEeC----------CCcEEEEECCC
Q 001039 849 EDAGFFISGS------TDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSD----------DQSVLVWDKQT 912 (1179)
Q Consensus 849 ~d~~~Lasgs------~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~sgs~----------dg~I~iwd~~t 912 (1179)
+++++++... .|++|.+||.. ..+....+..+..+-.+++||++++++++. +++|.+||..+
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~--t~~~~~~i~~g~~p~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t 90 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYT--NGKFLGMVPTAFNGHVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK 90 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETT--TCCEEEEEECCEEEEEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT
T ss_pred CCCCEEEEECCCCCccccCeEEEEECC--CCeEEEEecCCCCCceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC
Confidence 4566666553 37899999975 444556666665554478999999999863 67899999999
Q ss_pred CeEEEEeecC------CCcEEEEEEe-CCCEEEEEEc--CCeEEEEeCCCCeEEEE-eccCCCcEEEEEEcCCC-CEEEE
Q 001039 913 SQLLEELKGH------DAQVSCVRML-SGERVLTASH--DGTVKMWDVRTDTCVAT-VGRCSSAVLCMEYDDST-GILAA 981 (1179)
Q Consensus 913 ~~~~~~~~~h------~~~V~~l~~s-~~~~l~sgs~--dg~I~iwd~~~~~~~~~-~~~~~~~v~~l~~sp~~-~~l~s 981 (1179)
++.+.++... ......++++ ++++++++.. +++|.+||+.+++.+.. +... ....+.+.|++ ..+++
T Consensus 91 ~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~~~~~~ 168 (361)
T 2oiz_A 91 LTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQPNRPRSFMT 168 (361)
T ss_dssp CCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECTTSSSEEEE
T ss_pred CcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcCCCCeeEEE
Confidence 9998887643 2445678888 6888888764 68999999999998887 6432 22335667765 67788
Q ss_pred EeCCCeEEEEeCCC-CceeEEe------ecCCCCeE-EEEEcCCEEEEEeCCCcEEEEEccCCee--eEEeec------C
Q 001039 982 GGRDAVANIWDIRA-GRQMHKF------LGHTKWIR-SIRMDRDTVITGSDDWTARMWSISRGTC--DAVLAC------H 1045 (1179)
Q Consensus 982 gs~dg~I~iwD~~~-~~~~~~~------~~~~~~I~-sl~~~~~~l~sgs~dg~I~iwd~~~~~~--~~~~~~------h 1045 (1179)
.+.||.+.+|+... ++..... .....++. ....++..++..+.++.|.++|+..+.. ...+.. +
T Consensus 169 ~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~ 248 (361)
T 2oiz_A 169 ICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKA 248 (361)
T ss_dssp EETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHH
T ss_pred ECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccc
Confidence 88999999999865 5544221 11112211 1123456677777899999999875532 222211 1
Q ss_pred C----cCEEEEEEecCCCEEEEEeC-----------CCcEEEEEcCCCCcceEEEeecccCceEEEEecCCCEEEEEECC
Q 001039 1046 A----GPVQCVEYSSSDRGIITGSS-----------DGLLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIGAAD 1110 (1179)
Q Consensus 1046 ~----~~V~~l~~spdg~~l~sgs~-----------Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~lasgs~D 1110 (1179)
. .....++++|+++.++++.. ++.|.+||..+ .+.+..+..+...-.+++|||++|++++.
T Consensus 249 ~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t---~~~v~~i~~~~p~~ia~spdg~~l~v~n~- 324 (361)
T 2oiz_A 249 KNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT---KQRVARIPGRDALSMTIDQQRNLMLTLDG- 324 (361)
T ss_dssp TTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTT---TEEEEEEECTTCCEEEEETTTTEEEEECS-
T ss_pred cccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCC---CcEEEEEecCCeeEEEECCCCCEEEEeCC-
Confidence 1 11123789999888877643 34799999988 56677666655444667999999999887
Q ss_pred CcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCC
Q 001039 1111 NSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERK 1159 (1179)
Q Consensus 1111 g~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~ 1159 (1179)
++|.+||..+..+ +.+.....+......++++|||+
T Consensus 325 ~~v~v~D~~t~~l-------------~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 325 GNVNVYDISQPEP-------------KLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp SCEEEEECSSSSC-------------EEEEEETTSCSSEEEEEECCCSC
T ss_pred CeEEEEECCCCcc-------------eeeEEeccCCCCcEEEEecCCCC
Confidence 9999999874311 34444445566778999999986
No 169
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.60 E-value=4.4e-14 Score=180.20 Aligned_cols=313 Identities=10% Similarity=0.072 Sum_probs=202.3
Q ss_pred eEEEEEccCCCceeeccCceEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCce-----EEEEeecccceeccc
Q 001039 771 WVQSMFSREASSRSHSFSRVRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAI-----TALHCVTKREVWDLV 845 (1179)
Q Consensus 771 i~~~~fSpdg~~las~~~dI~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V-----~~v~~s~~~~~~~~~ 845 (1179)
...++|+|||++++++...|++||+.+++ +...+.+|.... ..++||
T Consensus 19 ~~~~~w~~dg~~~~~~~~~i~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~S--------- 70 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQENNILVFNAEYGN-------------------SSVFLENSTFDEFGHSINDYSIS--------- 70 (740)
T ss_dssp CCCEEECSSSEEEEEETTEEEEEETTTCC-------------------EEEEECTTTTTTCCSCCCEEEEC---------
T ss_pred ccccEECCCCcEEEEcCCcEEEEECCCCc-------------------eEEEEechhhhhhcccccceEEC---------
Confidence 34689999999999972239999999887 566777776543 234555
Q ss_pred cccCCCCEEEEEeCC---------CcEEEEcCCCCCceeEEEeccccccEE--EEecCCCEEEEEeCCCcEEEEECCCCe
Q 001039 846 GDREDAGFFISGSTD---------CLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKVVSGSDDQSVLVWDKQTSQ 914 (1179)
Q Consensus 846 ~~s~d~~~Lasgs~D---------g~I~lWd~~~~~~~~~~~l~~h~~~v~--~~s~d~~~l~sgs~dg~I~iwd~~t~~ 914 (1179)
|||++|+.++.+ +.+.+||+. +.+. ..+..|...+. ++||||+.|+.+. ++.|++||..+++
T Consensus 71 ---pdg~~l~~~~~~~~~~r~~~~~~~~~~d~~--~~~~-~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~ 143 (740)
T 4a5s_A 71 ---PDGQFILLEYNYVKQWRHSYTASYDIYDLN--KRQL-ITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLP 143 (740)
T ss_dssp ---TTSSEEEEEEEEEECSSSCEEEEEEEEETT--TTEE-CCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSC
T ss_pred ---CCCCEEEEEECCeeeEEEccceEEEEEECC--CCcE-EEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCc
Confidence 999999999876 566799987 3333 34566666665 5799999999885 6899999999887
Q ss_pred EEEE-eecCCCcE-----------------EEEEEe-CCCEEEEEEcCC-------------------------------
Q 001039 915 LLEE-LKGHDAQV-----------------SCVRML-SGERVLTASHDG------------------------------- 944 (1179)
Q Consensus 915 ~~~~-~~~h~~~V-----------------~~l~~s-~~~~l~sgs~dg------------------------------- 944 (1179)
..+. ..++...+ ..+.|+ ||+.|+.++.|.
T Consensus 144 ~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~ 223 (740)
T 4a5s_A 144 SYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGA 223 (740)
T ss_dssp CEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTS
T ss_pred eEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcC
Confidence 6542 22333323 248899 688888775321
Q ss_pred -----eEEEEeCCC---Ce--EEEEec------cCCCcEEEEEEcCCCCEEEEEeC----CCeEEEEeCCCCc----ee-
Q 001039 945 -----TVKMWDVRT---DT--CVATVG------RCSSAVLCMEYDDSTGILAAGGR----DAVANIWDIRAGR----QM- 999 (1179)
Q Consensus 945 -----~I~iwd~~~---~~--~~~~~~------~~~~~v~~l~~sp~~~~l~sgs~----dg~I~iwD~~~~~----~~- 999 (1179)
+|.+||+.+ ++ ....+. ++...+..++|+|||+.++.... +..|.+||+.+++ +.
T Consensus 224 ~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~ 303 (740)
T 4a5s_A 224 VNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLV 303 (740)
T ss_dssp CCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECG
T ss_pred cCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeE
Confidence 588899988 73 223333 26778999999999997666543 2379999999887 22
Q ss_pred -EEe--ecCCCCeE-----EEEEcC--CEEE-EEe-CCC--cEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEe
Q 001039 1000 -HKF--LGHTKWIR-----SIRMDR--DTVI-TGS-DDW--TARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGS 1065 (1179)
Q Consensus 1000 -~~~--~~~~~~I~-----sl~~~~--~~l~-sgs-~dg--~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs 1065 (1179)
..+ .++...+. ...|++ +.++ ..+ .+| .|++||..+++.. .+......+..+.. +|++.++..+
T Consensus 304 ~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-~lT~g~~~v~~~~~-~d~~~i~f~~ 381 (740)
T 4a5s_A 304 ARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT-FITKGTWEVIGIEA-LTSDYLYYIS 381 (740)
T ss_dssp GGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE-ESCCSSSCEEEEEE-ECSSEEEEEE
T ss_pred EEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE-ecccCCEEEEEEEE-EeCCEEEEEE
Confidence 222 45555554 567754 4555 554 344 5888898776654 34434555666542 4466665544
Q ss_pred CC-----CcEEEEEcCCCCcceEEEeecc------cCceEEEEecCCCEEEEEECC---CcEEEEeCCCC
Q 001039 1066 SD-----GLLRFWENDDAGGIKCVKNVTI------HSSAILSINAGDHWLGIGAAD---NSMSLFHRPQE 1121 (1179)
Q Consensus 1066 ~D-----g~I~iwd~~~~~~~~~~~~~~~------h~~~i~sis~dg~~lasgs~D---g~I~iwd~~~~ 1121 (1179)
.. +...+|.++..+ ......+.. ....-.++++++++++....+ ..+.+++..+.
T Consensus 382 ~~~~~~~~~~~ly~v~~~g-~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~ 450 (740)
T 4a5s_A 382 NEYKGMPGGRNLYKIQLID-YTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVND 450 (740)
T ss_dssp SCGGGCTTCBEEEEEETTE-EEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTT
T ss_pred ecCCCCCceeEEEEEECCC-CCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCC
Confidence 33 445566554322 111112221 122335678999987765543 46777887643
No 170
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.60 E-value=3.5e-14 Score=178.68 Aligned_cols=284 Identities=8% Similarity=0.002 Sum_probs=196.0
Q ss_pred eEEEecccCceEEEEeecccceeccccccCCCCEEEEE--eCCCcEEEEcCCCCCceeEEEeccccccEE----------
Q 001039 820 IRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISG--STDCLVKIWDPSLRGSELRATLKGHTRTVR---------- 887 (1179)
Q Consensus 820 ~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasg--s~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~---------- 887 (1179)
...+.+|...|..++++ +++-+++++ +.++...||... .+.. ...+..|...+.
T Consensus 16 ~~~~~~~~~~~~~~~~s------------~~~~~~~~~~~~~~~~~~l~~~~-~~~~-~~~l~~~~~~~~~~~~~~~~~~ 81 (662)
T 3azo_A 16 AALVASRSGRPACVGAV------------GDEVWWVAPRPAEAGRATLVRRR-ADGA-EESALPAPWNVRNRVFEYSGFP 81 (662)
T ss_dssp HHHHHHTCSCCEEEEEE------------TTEEEEEEEETTTTTEEEEEEEC-TTSC-EEESSCTTCCBCCCGGGTCCCC
T ss_pred HHHHhhcCCccceeEEc------------CCeEEEEecCcccCCcEEEEEEC-CCCC-cceeCCCCccccccccccCCcc
Confidence 34577899999999997 666667777 568889999853 2333 345555543322
Q ss_pred -EE--ecCCCE-EEEEeC-CCcEEEEECC--C-CeEEEEeec-----CCCcEEEEEEe-CCCEEEEEEcC----------
Q 001039 888 -AI--NSDRGK-VVSGSD-DQSVLVWDKQ--T-SQLLEELKG-----HDAQVSCVRML-SGERVLTASHD---------- 943 (1179)
Q Consensus 888 -~~--s~d~~~-l~sgs~-dg~I~iwd~~--t-~~~~~~~~~-----h~~~V~~l~~s-~~~~l~sgs~d---------- 943 (1179)
.+ ||||+. |+.++. +..|.+|+.. + ++ ...+.. |...+..++|+ +|+.|++++.+
T Consensus 82 ~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~ 160 (662)
T 3azo_A 82 WAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVR 160 (662)
T ss_dssp EEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEE
T ss_pred ceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCce
Confidence 24 399998 776654 5667777765 3 43 445554 66788899999 78889888876
Q ss_pred CeEEEEeCCC------CeEEEEec-cCCCcEEEEEEcCCCCEEEEEeCC--------CeEEEEeCC-CC---ceeEEeec
Q 001039 944 GTVKMWDVRT------DTCVATVG-RCSSAVLCMEYDDSTGILAAGGRD--------AVANIWDIR-AG---RQMHKFLG 1004 (1179)
Q Consensus 944 g~I~iwd~~~------~~~~~~~~-~~~~~v~~l~~sp~~~~l~sgs~d--------g~I~iwD~~-~~---~~~~~~~~ 1004 (1179)
..|.+||+.+ ++. ..+. .+...+..++|+|||++|+.++.+ ..|++||+. ++ +......+
T Consensus 161 ~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~ 239 (662)
T 3azo_A 161 RFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG 239 (662)
T ss_dssp EEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE
T ss_pred eEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC
Confidence 5899999988 554 4554 556678889999999999987754 379999999 56 44444445
Q ss_pred CCCCeEEEEEc--CCEEEEEeCCC--cEEEEEccCCeeeEEeecCCcC--------EEEEEEecCCCEEEEEeCCCcEEE
Q 001039 1005 HTKWIRSIRMD--RDTVITGSDDW--TARMWSISRGTCDAVLACHAGP--------VQCVEYSSSDRGIITGSSDGLLRF 1072 (1179)
Q Consensus 1005 ~~~~I~sl~~~--~~~l~sgs~dg--~I~iwd~~~~~~~~~~~~h~~~--------V~~l~~spdg~~l~sgs~Dg~I~i 1072 (1179)
+...+..+.|+ ++++++++.++ .|.+||..+++.......+... +.+++|+++++++++++. +.+++
T Consensus 240 ~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l 318 (662)
T 3azo_A 240 PEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVL 318 (662)
T ss_dssp TTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEE
T ss_pred CCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEE
Confidence 67889999995 45777888888 5666776677654444333222 567899999999999998 99999
Q ss_pred EEcCCCCcceEEEeecccCceEEEE-ecCCCEEE--EEECCC--cEEEEeCCCCC
Q 001039 1073 WENDDAGGIKCVKNVTIHSSAILSI-NAGDHWLG--IGAADN--SMSLFHRPQER 1122 (1179)
Q Consensus 1073 wd~~~~~~~~~~~~~~~h~~~i~si-s~dg~~la--sgs~Dg--~I~iwd~~~~~ 1122 (1179)
|.++... ..+..+..+...+..+ +++++.++ +++.+. .|.+||+.+++
T Consensus 319 ~~~d~~~--~~~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~ 371 (662)
T 3azo_A 319 GILDPES--GELVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGR 371 (662)
T ss_dssp EEEETTT--TEEEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEEECCC--CcEEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 9544321 1245566677777777 77766444 344454 45555665443
No 171
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.60 E-value=1.8e-14 Score=168.32 Aligned_cols=267 Identities=9% Similarity=-0.025 Sum_probs=173.4
Q ss_pred eEEEEEccCCCceeeccCc-----eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCc-eEEEEeecccceecc
Q 001039 771 WVQSMFSREASSRSHSFSR-----VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGA-ITALHCVTKREVWDL 844 (1179)
Q Consensus 771 i~~~~fSpdg~~las~~~d-----I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~-V~~v~~s~~~~~~~~ 844 (1179)
+..++|||||++++.+... |.+||+++++ . ..+..+... ...+.|+
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~-------------------~-~~l~~~~~~~~~~~~~s-------- 89 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQ-------------------A-VQLTEGKGDNTFGGFIS-------- 89 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTE-------------------E-EECCCSSCBCTTTCEEC--------
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCc-------------------E-EEeecCCCCccccceEC--------
Confidence 4557999999998766432 8888887665 2 222222222 2225555
Q ss_pred ccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEE---------------------EEecCCCEEEEE----
Q 001039 845 VGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR---------------------AINSDRGKVVSG---- 899 (1179)
Q Consensus 845 ~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~---------------------~~s~d~~~l~sg---- 899 (1179)
|||+.|+.++.++.|++||+.. .+.......+..... +++|+++.++.+
T Consensus 90 ----pdg~~l~~~~~~~~l~~~d~~~--~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~ 163 (396)
T 3c5m_A 90 ----TDERAFFYVKNELNLMKVDLET--LEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYH 163 (396)
T ss_dssp ----TTSSEEEEEETTTEEEEEETTT--CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHH
T ss_pred ----CCCCEEEEEEcCCcEEEEECCC--CCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeecc
Confidence 9999999999999999999763 333333333332211 235566655543
Q ss_pred -eCCCcEEEEECCCCeEEEEeecCCCcEEEEEEeC--CCEEEEEEcC------CeEEEEeCCCCeEEEEeccC-CCcEEE
Q 001039 900 -SDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLS--GERVLTASHD------GTVKMWDVRTDTCVATVGRC-SSAVLC 969 (1179)
Q Consensus 900 -s~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s~--~~~l~sgs~d------g~I~iwd~~~~~~~~~~~~~-~~~v~~ 969 (1179)
..++.|.+||+.+++..... .+...+..+.|++ +..++.++.+ ..|.+||+.+++........ ...+..
T Consensus 164 ~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~ 242 (396)
T 3c5m_A 164 TNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTH 242 (396)
T ss_dssp TCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEE
T ss_pred CCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccc
Confidence 35678999999988765544 4667788999986 5557666543 46889998766543333221 335888
Q ss_pred EEEcCCCCEEEEEeCC-----CeEEEEeCCCCceeEEeecCCCCeEEEEE---cCCEEEEEe----------------CC
Q 001039 970 MEYDDSTGILAAGGRD-----AVANIWDIRAGRQMHKFLGHTKWIRSIRM---DRDTVITGS----------------DD 1025 (1179)
Q Consensus 970 l~~sp~~~~l~sgs~d-----g~I~iwD~~~~~~~~~~~~~~~~I~sl~~---~~~~l~sgs----------------~d 1025 (1179)
++|+|+|+.|+.++.+ +.|++||+.+++........ . .. ..| +++.+++++ .+
T Consensus 243 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~ 319 (396)
T 3c5m_A 243 EFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP-P-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIEND 319 (396)
T ss_dssp EEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC-S-EE-EEEECSSSSEEEEEECCC----------CCCCC
T ss_pred eEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC-C-CC-CCccCCCCceEEEecCCcceeeccccccccCCC
Confidence 9999999988777543 45999999988654332222 1 22 555 445666654 34
Q ss_pred CcEEEEEccCCeeeEEeecCCc-----------CEEEEEEecCCCEEEEEeC-CCcEEEEEcC
Q 001039 1026 WTARMWSISRGTCDAVLACHAG-----------PVQCVEYSSSDRGIITGSS-DGLLRFWEND 1076 (1179)
Q Consensus 1026 g~I~iwd~~~~~~~~~~~~h~~-----------~V~~l~~spdg~~l~sgs~-Dg~I~iwd~~ 1076 (1179)
+.|++||+.+++.. .+..+.. .+..++|+|||+.|+.++. ++...+|.++
T Consensus 320 ~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 320 PFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp CEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred CcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence 78999999888754 3444443 2567899999999887764 5555555543
No 172
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.59 E-value=4e-13 Score=155.96 Aligned_cols=266 Identities=9% Similarity=0.049 Sum_probs=174.1
Q ss_pred EEEEeCC--CcEEEEcCCCCCcee--EEEec-cc--cccEEEEecCCCEEEEEeCCCcEEEEECC-CCeEEEEeecC-CC
Q 001039 854 FISGSTD--CLVKIWDPSLRGSEL--RATLK-GH--TRTVRAINSDRGKVVSGSDDQSVLVWDKQ-TSQLLEELKGH-DA 924 (1179)
Q Consensus 854 Lasgs~D--g~I~lWd~~~~~~~~--~~~l~-~h--~~~v~~~s~d~~~l~sgs~dg~I~iwd~~-t~~~~~~~~~h-~~ 924 (1179)
++.|+.. +.|.+|+++..+..+ ..... ++ ...-.+++++++++++++.+ .|.+|++. +++........ .+
T Consensus 5 ~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g 83 (365)
T 1jof_A 5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGG 83 (365)
T ss_dssp EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCS
T ss_pred EEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCC
Confidence 4555543 568887754333333 22221 12 22234689999999999888 99999997 78765433211 12
Q ss_pred cEEEEEEeC-CCE--EEEEE-------------cCCeEEEEeCC-CCeEEEEec----cCCCcEEEEEEcCCCCEEEEEe
Q 001039 925 QVSCVRMLS-GER--VLTAS-------------HDGTVKMWDVR-TDTCVATVG----RCSSAVLCMEYDDSTGILAAGG 983 (1179)
Q Consensus 925 ~V~~l~~s~-~~~--l~sgs-------------~dg~I~iwd~~-~~~~~~~~~----~~~~~v~~l~~sp~~~~l~sgs 983 (1179)
...++++++ ++. +++++ .+|++.+|++. +++....+. .+...+.+++|+|+|+++++++
T Consensus 84 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 163 (365)
T 1jof_A 84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD 163 (365)
T ss_dssp SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEc
Confidence 244577774 553 34442 68999999997 466544433 2456799999999999888776
Q ss_pred C-CCeEEEEeCC-CCcee--EEee--cCCCCeEEEEEcCC--EEEEEeC-CCcEEEEEcc--CCeee---EEeec-----
Q 001039 984 R-DAVANIWDIR-AGRQM--HKFL--GHTKWIRSIRMDRD--TVITGSD-DWTARMWSIS--RGTCD---AVLAC----- 1044 (1179)
Q Consensus 984 ~-dg~I~iwD~~-~~~~~--~~~~--~~~~~I~sl~~~~~--~l~sgs~-dg~I~iwd~~--~~~~~---~~~~~----- 1044 (1179)
. ++.|.+||+. +++.. ..+. .+...+..++|+++ ++++++. ++.|.+|+++ +++.. ..+..
T Consensus 164 ~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~ 243 (365)
T 1jof_A 164 LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGI 243 (365)
T ss_dssp TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTC
T ss_pred CCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCc
Confidence 4 6799999998 67643 3333 23567888999654 6766664 7899999875 46542 12221
Q ss_pred --CCc------CEEEEE-EecCCCEEEEEeCCC------cEEEEEcCCCCcceEEEe-eccc--CceEEEEec---CCCE
Q 001039 1045 --HAG------PVQCVE-YSSSDRGIITGSSDG------LLRFWENDDAGGIKCVKN-VTIH--SSAILSINA---GDHW 1103 (1179)
Q Consensus 1045 --h~~------~V~~l~-~spdg~~l~sgs~Dg------~I~iwd~~~~~~~~~~~~-~~~h--~~~i~sis~---dg~~ 1103 (1179)
|.. .+..++ |+|||++|++++.++ .|.+|+++..+....+.. ...+ ...-.+++| +|++
T Consensus 244 ~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~ 323 (365)
T 1jof_A 244 PDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEW 323 (365)
T ss_dssp CCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTE
T ss_pred CCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCE
Confidence 122 588999 999999988776432 899999973232332221 2222 223356789 8999
Q ss_pred EEEEECC-CcEEEEeCCC
Q 001039 1104 LGIGAAD-NSMSLFHRPQ 1120 (1179)
Q Consensus 1104 lasgs~D-g~I~iwd~~~ 1120 (1179)
|++++.+ +.|.+|++..
T Consensus 324 l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 324 MAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp EEEECSSSCEEEEEEEET
T ss_pred EEEEEcCCCeEEEEEEch
Confidence 9999865 8999999863
No 173
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.57 E-value=6.8e-13 Score=151.57 Aligned_cols=256 Identities=7% Similarity=-0.059 Sum_probs=185.5
Q ss_pred CCCcEEEEECCCCeEEEEee------cCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcC
Q 001039 901 DDQSVLVWDKQTSQLLEELK------GHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDD 974 (1179)
Q Consensus 901 ~dg~I~iwd~~t~~~~~~~~------~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp 974 (1179)
.+++|.+||..+++....+. ........+.+.++..+++...++.|.+||..+++.+.++. .......+++++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~ 93 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLS 93 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeC
Confidence 37899999999998876542 12244677877666666666678999999999999988884 346788999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEeecCC-----CCeEEEEEcCCEEEEEe--CCCcEEEEEccCCeeeEEeecCCc
Q 001039 975 STGILAAGGRDAVANIWDIRAGRQMHKFLGHT-----KWIRSIRMDRDTVITGS--DDWTARMWSISRGTCDAVLACHAG 1047 (1179)
Q Consensus 975 ~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~-----~~I~sl~~~~~~l~sgs--~dg~I~iwd~~~~~~~~~~~~h~~ 1047 (1179)
+++.+++...++.|.+||..+++....+.... .....++++++.++++. .++.|.+||..+++....+... .
T Consensus 94 ~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~ 172 (328)
T 3dsm_A 94 DEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-I 172 (328)
T ss_dssp TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-S
T ss_pred CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-C
Confidence 88544444378999999999998887765433 14556666777666665 4889999999999988877643 3
Q ss_pred CEEEEEEecCCCEEEEEeCC----------CcEEEEEcCCCCcceEEEeec---ccCceEEEEecCCCEEEEEECCCcEE
Q 001039 1048 PVQCVEYSSSDRGIITGSSD----------GLLRFWENDDAGGIKCVKNVT---IHSSAILSINAGDHWLGIGAADNSMS 1114 (1179)
Q Consensus 1048 ~V~~l~~spdg~~l~sgs~D----------g~I~iwd~~~~~~~~~~~~~~---~h~~~i~sis~dg~~lasgs~Dg~I~ 1114 (1179)
....++++|+|++++++..+ +.|.+||..+. +....+. +....-++++++++.+.++.. .|.
T Consensus 173 ~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~---~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~ 247 (328)
T 3dsm_A 173 QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF---TVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIW 247 (328)
T ss_dssp CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT---EEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEE
T ss_pred CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC---eEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEE
Confidence 45788999999977776655 78999999873 3333332 223445677899999988765 899
Q ss_pred EEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcC-CCCEEEEE----eCCCcEEEEECC
Q 001039 1115 LFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDL-ERKRICSG----GRNGLLRLWEAT 1176 (1179)
Q Consensus 1115 iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fsp-dg~~Lasg----s~Dg~I~vWdv~ 1176 (1179)
+||..+.++... . ....+.....+++++| ++.+.++. ..++.|.+||.+
T Consensus 248 ~~d~~t~~~~~~----------~---~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 248 RMPVEADRVPVR----------P---FLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp EEETTCSSCCSS----------C---SBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred EEECCCCceeee----------e---eecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 999875432100 0 0111245688999999 55566665 578999999987
No 174
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.55 E-value=2.3e-13 Score=171.24 Aligned_cols=283 Identities=11% Similarity=0.025 Sum_probs=182.7
Q ss_pred CCCcccccCCcceE---------EEEEc--cCCCc-eeeccCc---eEeeeCC--CCCCCCCCCCCCCCCCCcccccceE
Q 001039 759 QQPAEASGIGRSWV---------QSMFS--REASS-RSHSFSR---VRKWTSD--AANENGTPRKQDSTAGGKKIQSNIR 821 (1179)
Q Consensus 759 ~~~~~~~gh~~~i~---------~~~fS--pdg~~-las~~~d---I~vWd~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 821 (1179)
++...+.+|..++. ...|+ |||+. ++.++.. |.+|+++ ++. ..+
T Consensus 58 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~-------------------~~~ 118 (662)
T 3azo_A 58 GAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGA-------------------VPR 118 (662)
T ss_dssp SCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCC-------------------CCE
T ss_pred CCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCC-------------------CCE
Confidence 44445555555544 44454 99999 8877654 5555554 202 233
Q ss_pred EEec-----ccCceEEEEeecccceeccccccCCCCEEEEEeCC----------CcEEEEcCCCCC----ceeEEEec-c
Q 001039 822 IIRG-----HAGAITALHCVTKREVWDLVGDREDAGFFISGSTD----------CLVKIWDPSLRG----SELRATLK-G 881 (1179)
Q Consensus 822 ~l~g-----H~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~D----------g~I~lWd~~~~~----~~~~~~l~-~ 881 (1179)
.+.. |...+.+++|+ |||+.|++++.| ..|++||+.... ... ..+. .
T Consensus 119 ~l~~~~~~~~~~~~~~~~~s------------pDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~ 185 (662)
T 3azo_A 119 PLTPVSAVGGGLRWADPVLL------------PERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDD 185 (662)
T ss_dssp ECSCCCCSTTCEEEEEEEEE------------TTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCS
T ss_pred eccCCccCCCCccccCcEEC------------CCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEec
Confidence 4444 67788899998 899999999877 589999986310 333 3444 4
Q ss_pred ccccEE--EEecCCCEEEEEeCC--------CcEEEEECC-CC---eEEEEeecCCCcEEEEEEe-CCCEEEEEEcCC--
Q 001039 882 HTRTVR--AINSDRGKVVSGSDD--------QSVLVWDKQ-TS---QLLEELKGHDAQVSCVRML-SGERVLTASHDG-- 944 (1179)
Q Consensus 882 h~~~v~--~~s~d~~~l~sgs~d--------g~I~iwd~~-t~---~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg-- 944 (1179)
+...+. +++|||++|+.++.+ ..|++||+. ++ +......++...+..+.|+ +++.+++++.+|
T Consensus 186 ~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~ 265 (662)
T 3azo_A 186 AHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWW 265 (662)
T ss_dssp CSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSC
T ss_pred CCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCe
Confidence 444444 689999999988755 379999999 57 4544455567889999999 677777777788
Q ss_pred eEEEEeCCCCeEEEEeccCCCc--------EEEEEEcCCCCEEEEEeCCCeEEEE--eCCCCceeEEeecCCCCeEEE-E
Q 001039 945 TVKMWDVRTDTCVATVGRCSSA--------VLCMEYDDSTGILAAGGRDAVANIW--DIRAGRQMHKFLGHTKWIRSI-R 1013 (1179)
Q Consensus 945 ~I~iwd~~~~~~~~~~~~~~~~--------v~~l~~sp~~~~l~sgs~dg~I~iw--D~~~~~~~~~~~~~~~~I~sl-~ 1013 (1179)
.|.+||..+++.......+... +.+++++++++++++++. +.+++| |..+++ +..+..+...+..+ +
T Consensus 266 ~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s 343 (662)
T 3azo_A 266 NLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLT 343 (662)
T ss_dssp EEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEE
T ss_pred EEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEe
Confidence 6777777677655443332222 567899999999999988 998898 655554 67777788888888 8
Q ss_pred EcCCE--EEEEeCCC--cEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEc
Q 001039 1014 MDRDT--VITGSDDW--TARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWEN 1075 (1179)
Q Consensus 1014 ~~~~~--l~sgs~dg--~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~ 1075 (1179)
++++. +++++.+. .|..||+.+++.......+...+....+.+.....+.+..+..+..|-.
T Consensus 344 ~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~dg~~i~~~~~ 409 (662)
T 3azo_A 344 VSGTRAVGVAASPRTAYEVVELDTVTGRARTIGARHTDPVDPAYYPEPQIRTFTAPDGREIHAHIY 409 (662)
T ss_dssp EETTEEEEEEEETTEEEEEEEEETTTCCEEEEESCCCCSSCGGGSCCCEEEEEECTTSCEEEEEEE
T ss_pred cCCCEEEEEEcCCCCCCEEEEEECCCCceEEeecCCcccCCccccCcceEEEEEcCCCCEEEEEEE
Confidence 88773 33444454 4566677777765444444433332223322222333323335655543
No 175
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.54 E-value=3.3e-11 Score=147.05 Aligned_cols=321 Identities=11% Similarity=0.054 Sum_probs=219.0
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccc-cEEEEecCCCEEEEEeCCCcEEEEECC--CCeEEEEeecCCCc
Q 001039 849 EDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTR-TVRAINSDRGKVVSGSDDQSVLVWDKQ--TSQLLEELKGHDAQ 925 (1179)
Q Consensus 849 ~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~-~v~~~s~d~~~l~sgs~dg~I~iwd~~--t~~~~~~~~~h~~~ 925 (1179)
+++.++++...+++|.+||.. +.+.+..+..... ....+++||+++++++.|+.|.+||+. +++.+.++.... .
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~--t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~ 241 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGS--TYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-E 241 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETT--TCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-E
T ss_pred CCceEEEEeCCCCeEEEEECC--CCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-C
Confidence 445677788889999999976 4455555543322 234679999999999999999999996 888888887543 4
Q ss_pred EEEEEEe-----CCCEEEEEE-cCCeEEEEeCCCCeEEEEeccC-----------CCcEEEEEEcCCCCEEE-EEeCCCe
Q 001039 926 VSCVRML-----SGERVLTAS-HDGTVKMWDVRTDTCVATVGRC-----------SSAVLCMEYDDSTGILA-AGGRDAV 987 (1179)
Q Consensus 926 V~~l~~s-----~~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~-----------~~~v~~l~~sp~~~~l~-sgs~dg~ 987 (1179)
...++++ +|+++++++ .+++|.++|..+.+.+..+... ...+..+..++++..++ ....+|.
T Consensus 242 P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~ 321 (567)
T 1qks_A 242 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK 321 (567)
T ss_dssp EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe
Confidence 6788898 677777665 5699999999999988876421 22678888888766544 4456799
Q ss_pred EEEEeCCCCceeEEe-ecCCCCeEEEEEcC--CEEEE-EeCCCcEEEEEccCCeeeEEeec-----CCcCEEEEEEecCC
Q 001039 988 ANIWDIRAGRQMHKF-LGHTKWIRSIRMDR--DTVIT-GSDDWTARMWSISRGTCDAVLAC-----HAGPVQCVEYSSSD 1058 (1179)
Q Consensus 988 I~iwD~~~~~~~~~~-~~~~~~I~sl~~~~--~~l~s-gs~dg~I~iwd~~~~~~~~~~~~-----h~~~V~~l~~spdg 1058 (1179)
|.++|..+.+..... .........+.|++ +++++ ...+++|.++|+.+++....+.. |.+.-..+ ++|++
T Consensus 322 v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~ 400 (567)
T 1qks_A 322 ILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTF 400 (567)
T ss_dssp EEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTT
T ss_pred EEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCC
Confidence 999999876433221 13344566777855 45544 45688999999999988776654 33222222 58885
Q ss_pred CEEE-EEe-CCCcEEEEEcCCCCc----ceEEEeecccCc--eEEEEecCCCEEEEEEC-------CCcEEEEeCCCCCc
Q 001039 1059 RGII-TGS-SDGLLRFWENDDAGG----IKCVKNVTIHSS--AILSINAGDHWLGIGAA-------DNSMSLFHRPQERL 1123 (1179)
Q Consensus 1059 ~~l~-sgs-~Dg~I~iwd~~~~~~----~~~~~~~~~h~~--~i~sis~dg~~lasgs~-------Dg~I~iwd~~~~~~ 1123 (1179)
..++ ++. .++.|.++|..+.+. ++.+..+..... .....+|+++++.+... .++|.++|+.+.+.
T Consensus 401 g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~ 480 (567)
T 1qks_A 401 GPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTG 480 (567)
T ss_dssp EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCC
T ss_pred CcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccc
Confidence 5554 443 468999999987332 456666654322 22556899999998763 46999999974311
Q ss_pred CcccCCCCccccceeee-----ecCCCcccEEEEEEcCCCCEEEEEe-----CCCcEEEEECCCCC
Q 001039 1124 GGFSGTGSKMSGWQLYR-----TPQKTVAVVRCIASDLERKRICSGG-----RNGLLRLWEATINI 1179 (1179)
Q Consensus 1124 ~~~~~~g~~~~~~~~~~-----~~~~h~~~V~~v~fspdg~~Lasgs-----~Dg~I~vWdv~tg~ 1179 (1179)
+|... .++.+. .+......+..+.|+|||+.+..+. .++.|.|+|.+|++
T Consensus 481 -----~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~ 540 (567)
T 1qks_A 481 -----DGSDP-EFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLE 540 (567)
T ss_dssp -----SSSCC-CEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred -----cccCC-CcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCce
Confidence 11110 111111 0112245789999999999877663 37999999998864
No 176
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.52 E-value=3.1e-11 Score=147.35 Aligned_cols=306 Identities=8% Similarity=0.033 Sum_probs=208.4
Q ss_pred ceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceeccccccCCCCEEEEEeC
Q 001039 782 SRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGST 859 (1179)
Q Consensus 782 ~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~ 859 (1179)
.+++...+ |.+||.++++ .+..+.... .+..+.++ |||+++++++.
T Consensus 169 ~~V~~~~~~~V~viD~~t~~-------------------v~~~i~~g~-~p~~v~~S------------pDGr~lyv~~~ 216 (567)
T 1qks_A 169 FSVTLRDAGQIALIDGSTYE-------------------IKTVLDTGY-AVHISRLS------------ASGRYLFVIGR 216 (567)
T ss_dssp EEEEETTTTEEEEEETTTCC-------------------EEEEEECSS-CEEEEEEC------------TTSCEEEEEET
T ss_pred EEEEeCCCCeEEEEECCCCe-------------------EEEEEeCCC-CccceEEC------------CCCCEEEEEcC
Confidence 34444433 9999999877 555555332 45678887 89999999999
Q ss_pred CCcEEEEcCCCCCceeEEEeccccccE-EEEe----cCCCEEEEEeC-CCcEEEEECCCCeEEEEeecC-----------
Q 001039 860 DCLVKIWDPSLRGSELRATLKGHTRTV-RAIN----SDRGKVVSGSD-DQSVLVWDKQTSQLLEELKGH----------- 922 (1179)
Q Consensus 860 Dg~I~lWd~~~~~~~~~~~l~~h~~~v-~~~s----~d~~~l~sgs~-dg~I~iwd~~t~~~~~~~~~h----------- 922 (1179)
|+.|.+||+...+.+....+.....+. .+++ |||+++++++. ++++.++|..+.+.+..+...
T Consensus 217 dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p 296 (567)
T 1qks_A 217 DGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHP 296 (567)
T ss_dssp TSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEES
T ss_pred CCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccC
Confidence 999999997422344455554433333 3678 69999887765 599999999999998876532
Q ss_pred CCcEEEEEEeC-CC-EEEEEEcCCeEEEEeCCCCeEEE--EeccCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCc
Q 001039 923 DAQVSCVRMLS-GE-RVLTASHDGTVKMWDVRTDTCVA--TVGRCSSAVLCMEYDDSTGILAAGG-RDAVANIWDIRAGR 997 (1179)
Q Consensus 923 ~~~V~~l~~s~-~~-~l~sgs~dg~I~iwd~~~~~~~~--~~~~~~~~v~~l~~sp~~~~l~sgs-~dg~I~iwD~~~~~ 997 (1179)
...+..+..++ +. .++....+|.|.++|..+.+... .+ ........+.|+|+|++++++. .++.|.++|+.+++
T Consensus 297 ~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~k 375 (567)
T 1qks_A 297 EPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK 375 (567)
T ss_dssp CCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE
T ss_pred CCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCc
Confidence 12567777773 33 45555677999999998764322 22 2344677889999999987766 57899999999998
Q ss_pred eeEEeec-----CCCCeEEEEEcC--C-EEEEEe-CCCcEEEEEccC-------CeeeEEeecCCcCEEEEEEecCCCEE
Q 001039 998 QMHKFLG-----HTKWIRSIRMDR--D-TVITGS-DDWTARMWSISR-------GTCDAVLACHAGPVQCVEYSSSDRGI 1061 (1179)
Q Consensus 998 ~~~~~~~-----~~~~I~sl~~~~--~-~l~sgs-~dg~I~iwd~~~-------~~~~~~~~~h~~~V~~l~~spdg~~l 1061 (1179)
.+..+.. |.+.-..+ +++ . ..+++. .+++|.++|..+ .+.+.++......-..+..+|+++++
T Consensus 376 l~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l 454 (567)
T 1qks_A 376 LVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYL 454 (567)
T ss_dssp EEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEE
T ss_pred EEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeE
Confidence 8776643 32212222 343 3 444443 568999999987 56777777554443457789999999
Q ss_pred EEEeC-------CCcEEEEEcCCCCc---ceEEEeec--------ccCceE--EEEecCCCEEEEEEC-----CCcEEEE
Q 001039 1062 ITGSS-------DGLLRFWENDDAGG---IKCVKNVT--------IHSSAI--LSINAGDHWLGIGAA-----DNSMSLF 1116 (1179)
Q Consensus 1062 ~sgs~-------Dg~I~iwd~~~~~~---~~~~~~~~--------~h~~~i--~sis~dg~~lasgs~-----Dg~I~iw 1116 (1179)
.+... .++|.++|+.+.+. ...+..+. .....+ ..++++|+.+..+.+ ++.|.|+
T Consensus 455 ~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~ 534 (567)
T 1qks_A 455 YVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVV 534 (567)
T ss_dssp EEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEE
T ss_pred EEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEE
Confidence 98763 45899999987510 11222221 112233 455899998887643 7999999
Q ss_pred eCCCC
Q 001039 1117 HRPQE 1121 (1179)
Q Consensus 1117 d~~~~ 1121 (1179)
|..+.
T Consensus 535 D~~t~ 539 (567)
T 1qks_A 535 DDKTL 539 (567)
T ss_dssp ETTTT
T ss_pred ECCCc
Confidence 98854
No 177
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.52 E-value=7.5e-12 Score=139.47 Aligned_cols=233 Identities=11% Similarity=0.139 Sum_probs=167.1
Q ss_pred cCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEecc------CCCcEEEEEEc-CCCCEEEEEeC-CCeEEEE
Q 001039 921 GHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGR------CSSAVLCMEYD-DSTGILAAGGR-DAVANIW 991 (1179)
Q Consensus 921 ~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~------~~~~v~~l~~s-p~~~~l~sgs~-dg~I~iw 991 (1179)
++-....+++++ ++..+++.+.++.|.+||.. ++.+..+.. +...+..++++ ++++++++... ++.|.+|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 344678899998 56666677788999999987 666665532 23568899994 67766666543 8899999
Q ss_pred eCCCCceeEEeec-CCCCeEEEEEcC--CEEEEEeCCCcEEEEEccCCeeeEEee--cCCcCEEEEEEecCCCEEEEEeC
Q 001039 992 DIRAGRQMHKFLG-HTKWIRSIRMDR--DTVITGSDDWTARMWSISRGTCDAVLA--CHAGPVQCVEYSSSDRGIITGSS 1066 (1179)
Q Consensus 992 D~~~~~~~~~~~~-~~~~I~sl~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~--~h~~~V~~l~~spdg~~l~sgs~ 1066 (1179)
| .+++.+..+.. +...+.++++++ +.+++...++.|.+||. +++....+. .+...+.+++++++|+.+++.+.
T Consensus 106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~ 183 (286)
T 1q7f_A 106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR 183 (286)
T ss_dssp C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG
T ss_pred C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCCEEEEECC
Confidence 9 66777766643 345788899854 46777777899999995 455555554 34567899999999998888888
Q ss_pred CCcEEEEEcCCCCcceEEEeeccc--CceE--EEEecCCCEEEEEECCC-cEEEEeCCCCCcCcccCCCCccccceeeee
Q 001039 1067 DGLLRFWENDDAGGIKCVKNVTIH--SSAI--LSINAGDHWLGIGAADN-SMSLFHRPQERLGGFSGTGSKMSGWQLYRT 1141 (1179)
Q Consensus 1067 Dg~I~iwd~~~~~~~~~~~~~~~h--~~~i--~sis~dg~~lasgs~Dg-~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~ 1141 (1179)
++.|++||... ..+..+..+ ...+ .+++++|+++++...++ .|.+||.... .+..
T Consensus 184 ~~~i~~~~~~g----~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~----------------~~~~ 243 (286)
T 1q7f_A 184 AHCVKVFNYEG----QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ----------------LISA 243 (286)
T ss_dssp GTEEEEEETTC----CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSC----------------EEEE
T ss_pred CCEEEEEcCCC----CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCC----------------EEEE
Confidence 99999999754 334444322 2333 45578999888888776 9999996422 1111
Q ss_pred cC--CCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001039 1142 PQ--KTVAVVRCIASDLERKRICSGGRNGLLRLWEATI 1177 (1179)
Q Consensus 1142 ~~--~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~t 1177 (1179)
.. .....+.+++++|+|+++++ +.|++|++|+...
T Consensus 244 ~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 244 LESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp EEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred EcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 21 22234789999999987777 6799999999865
No 178
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.51 E-value=1.1e-11 Score=141.66 Aligned_cols=236 Identities=12% Similarity=0.102 Sum_probs=177.6
Q ss_pred cCceEEEEeecccceeccccccCCCCEEEEEeCC------------------------CcEEEEcCCCCCceeEEEec-c
Q 001039 827 AGAITALHCVTKREVWDLVGDREDAGFFISGSTD------------------------CLVKIWDPSLRGSELRATLK-G 881 (1179)
Q Consensus 827 ~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~D------------------------g~I~lWd~~~~~~~~~~~l~-~ 881 (1179)
-+.|.+|+++ ++|+++++.+.+ ++|.+||.. +........ +
T Consensus 23 l~~v~~va~d------------~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~--~g~~~~~~~~~ 88 (329)
T 3fvz_A 23 PGQVSGVALD------------SKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPN--NAEILQSSGKN 88 (329)
T ss_dssp CSCEEEEEEC------------TTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTT--TCCEEEEECTT
T ss_pred cCCceEEEEC------------CCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECC--CCeEEeccCCC
Confidence 4678999987 889999988877 479999965 333444333 3
Q ss_pred ccccEE--EEecCCCEEEEEeCCCcEEEEECCCCe-EEEEe---------ecCCCcEEEEEEeC--CCEEEEEE-cCCeE
Q 001039 882 HTRTVR--AINSDRGKVVSGSDDQSVLVWDKQTSQ-LLEEL---------KGHDAQVSCVRMLS--GERVLTAS-HDGTV 946 (1179)
Q Consensus 882 h~~~v~--~~s~d~~~l~sgs~dg~I~iwd~~t~~-~~~~~---------~~h~~~V~~l~~s~--~~~l~sgs-~dg~I 946 (1179)
+-.... +++++|+.+++...++.|++||..... .+..+ .++-.....+++++ +..+++.+ .++.|
T Consensus 89 ~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I 168 (329)
T 3fvz_A 89 LFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRI 168 (329)
T ss_dssp TCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEE
T ss_pred ccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeE
Confidence 333333 568899988888889999999986542 44555 23445688999984 45555554 58999
Q ss_pred EEEeCCCCeEEEEeccCC----------CcEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeEEee--cCCCCeEEEE
Q 001039 947 KMWDVRTDTCVATVGRCS----------SAVLCMEYDDS-TGILAAGGRDAVANIWDIRAGRQMHKFL--GHTKWIRSIR 1013 (1179)
Q Consensus 947 ~iwd~~~~~~~~~~~~~~----------~~v~~l~~sp~-~~~l~sgs~dg~I~iwD~~~~~~~~~~~--~~~~~I~sl~ 1013 (1179)
++|| .+++.+..+.... .....++++|+ +.++++...++.|++||..+++.+..+. .+...+.+++
T Consensus 169 ~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~ 247 (329)
T 3fvz_A 169 VQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAIS 247 (329)
T ss_dssp EEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEE
T ss_pred EEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceee
Confidence 9999 5677777664322 23889999998 7777777788999999999898888874 4556788888
Q ss_pred EcCCEEEEE--------eCCCcEEEEEccCCeeeEEee---cCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 001039 1014 MDRDTVITG--------SDDWTARMWSISRGTCDAVLA---CHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDD 1077 (1179)
Q Consensus 1014 ~~~~~l~sg--------s~dg~I~iwd~~~~~~~~~~~---~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~ 1077 (1179)
+.+..++.. ..+..|++||..+++.+..+. ++...+.+++++|+|..+++...++.|++|++..
T Consensus 248 ~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 248 YIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred ecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 877544433 234589999999999988874 5677899999999998888888999999999865
No 179
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.51 E-value=4.9e-12 Score=144.44 Aligned_cols=235 Identities=9% Similarity=0.045 Sum_probs=167.8
Q ss_pred CcEEEEEEe-CCCEEEEEEcC------------------------CeEEEEeCCCCeEEEEec-cCCCcEEEEEEcCCCC
Q 001039 924 AQVSCVRML-SGERVLTASHD------------------------GTVKMWDVRTDTCVATVG-RCSSAVLCMEYDDSTG 977 (1179)
Q Consensus 924 ~~V~~l~~s-~~~~l~sgs~d------------------------g~I~iwd~~~~~~~~~~~-~~~~~v~~l~~sp~~~ 977 (1179)
+.+.+++++ +++.+++...+ ++|.+||..+++...... .+-.....++++++|+
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~ 103 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN 103 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC
Confidence 467888887 46666555555 479999999999877664 3445789999999999
Q ss_pred EEEEEeCCCeEEEEeCCCCc-eeEEe---------ecCCCCeEEEEEcC---CEEEEEe-CCCcEEEEEccCCeeeEEee
Q 001039 978 ILAAGGRDAVANIWDIRAGR-QMHKF---------LGHTKWIRSIRMDR---DTVITGS-DDWTARMWSISRGTCDAVLA 1043 (1179)
Q Consensus 978 ~l~sgs~dg~I~iwD~~~~~-~~~~~---------~~~~~~I~sl~~~~---~~l~sgs-~dg~I~iwd~~~~~~~~~~~ 1043 (1179)
++++...++.|++||..... .+..+ .++......+++++ +.+++.+ .++.|++|| .+++.+..+.
T Consensus 104 l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~ 182 (329)
T 3fvz_A 104 YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWG 182 (329)
T ss_dssp EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEEC
T ss_pred EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEec
Confidence 88888889999999986542 45555 23445788999975 3566665 689999999 5677776664
Q ss_pred cCC----------cCEEEEEEecC-CCEEEEEeCCCcEEEEEcCCCCcceEEEee--cccCceEEE--Eec------CCC
Q 001039 1044 CHA----------GPVQCVEYSSS-DRGIITGSSDGLLRFWENDDAGGIKCVKNV--TIHSSAILS--INA------GDH 1102 (1179)
Q Consensus 1044 ~h~----------~~V~~l~~spd-g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~--~~h~~~i~s--is~------dg~ 1102 (1179)
... .....++++|+ +..+++...++.|++||..++ +.+..+ ..+...+.+ ++| +|+
T Consensus 183 ~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G---~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~ 259 (329)
T 3fvz_A 183 EESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK---EFVREIKHASFGRNVFAISYIPGFLFAVNGK 259 (329)
T ss_dssp EECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC---CEEEEECCTTTTTCEEEEEEETTEEEEEECC
T ss_pred cCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC---cEEEEEeccccCCCcceeeecCCEEEEeCCC
Confidence 222 34899999998 777777778999999999863 333333 233334443 356 333
Q ss_pred EEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeec---CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001039 1103 WLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTP---QKTVAVVRCIASDLERKRICSGGRNGLLRLWEATI 1177 (1179)
Q Consensus 1103 ~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~---~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~t 1177 (1179)
..++...++.|++||..+. +.+..+ .++...+.+++++|||.++++...++.|++|+++.
T Consensus 260 ~~v~~~~~~~v~~~~~~~g---------------~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 260 PYFGDQEPVQGFVMNFSSG---------------EIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CCTTCSCCCCEEEEETTTC---------------CEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EEeccCCCcEEEEEEcCCC---------------eEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 3333334568999998743 222222 45667799999999998889999999999999754
No 180
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.50 E-value=2e-11 Score=135.98 Aligned_cols=233 Identities=11% Similarity=0.203 Sum_probs=168.4
Q ss_pred cccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEec------cccccEEE--Ee-cCCCE
Q 001039 825 GHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLK------GHTRTVRA--IN-SDRGK 895 (1179)
Q Consensus 825 gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~------~h~~~v~~--~s-~d~~~ 895 (1179)
+|-....+++++ ++++++++.+.++.|.+||.+ + .....+. +|.....+ +. +++..
T Consensus 27 g~~~~p~~v~~~------------~~g~l~v~~~~~~~i~~~d~~--g-~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l 91 (286)
T 1q7f_A 27 GQFTEPSGVAVN------------AQNDIIVADTNNHRIQIFDKE--G-RFKFQFGECGKRDSQLLYPNRVAVVRNSGDI 91 (286)
T ss_dssp TCBSCEEEEEEC------------TTCCEEEEEGGGTEEEEECTT--S-CEEEEECCBSSSTTCBSSEEEEEEETTTTEE
T ss_pred CccCCCceEEEC------------CCCCEEEEECCCCEEEEECCC--C-cEEEEecccCCCcccccCceEEEEEcCCCeE
Confidence 455678888887 789988888889999999965 2 2333332 23334444 43 45554
Q ss_pred EEEEeC-CCcEEEEECCCCeEEEEeec-CCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEec--cCCCcEEEE
Q 001039 896 VVSGSD-DQSVLVWDKQTSQLLEELKG-HDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVG--RCSSAVLCM 970 (1179)
Q Consensus 896 l~sgs~-dg~I~iwd~~t~~~~~~~~~-h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~--~~~~~v~~l 970 (1179)
+++... ++.|.+|| .+++.+..+.. +...+.++++. +++.+++...++.|.+||.. ++.+..+. .+...+.++
T Consensus 92 ~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i 169 (286)
T 1q7f_A 92 IVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGV 169 (286)
T ss_dssp EEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEE
T ss_pred EEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEE
Confidence 544433 88999999 66777776643 34578899998 56666666678999999964 55555553 344578999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecC--CCCeEEEEEcC--CEEEEEeCCC-cEEEEEccCCeeeEEeecC
Q 001039 971 EYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGH--TKWIRSIRMDR--DTVITGSDDW-TARMWSISRGTCDAVLACH 1045 (1179)
Q Consensus 971 ~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~--~~~I~sl~~~~--~~l~sgs~dg-~I~iwd~~~~~~~~~~~~h 1045 (1179)
+++++|+++++...++.|.+||. +++.+..+..+ ...+..+++++ +++++...++ .|.+||. +++.+..+..+
T Consensus 170 ~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~ 247 (286)
T 1q7f_A 170 VVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESK 247 (286)
T ss_dssp EECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEES
T ss_pred EECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEccc
Confidence 99999998887778899999997 45666666443 35788999964 4667766675 9999995 56666666654
Q ss_pred C--cCEEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 001039 1046 A--GPVQCVEYSSSDRGIITGSSDGLLRFWENDD 1077 (1179)
Q Consensus 1046 ~--~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~ 1077 (1179)
. ..+.+++++|+|+.+++ +.|+.|++|+...
T Consensus 248 ~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 248 VKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp SCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred CCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 3 34789999999987776 6799999999865
No 181
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.47 E-value=7.7e-12 Score=143.40 Aligned_cols=254 Identities=11% Similarity=0.060 Sum_probs=170.9
Q ss_pred cceEEEEEccCCCceeecc---------Cc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeec
Q 001039 769 RSWVQSMFSREASSRSHSF---------SR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVT 837 (1179)
Q Consensus 769 ~~i~~~~fSpdg~~las~~---------~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~ 837 (1179)
..+...++ ||+.++... .+ |.+||+++++ . +.+ ..+.+++|+
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~-------------------~-~~l----~~~~~~~~S- 67 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNA-------------------R-RFI----ENATMPRIS- 67 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCC-------------------E-EEE----ESCEEEEEC-
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCc-------------------e-EEc----ccCCCeEEC-
Confidence 44556677 998887642 12 8899988765 2 223 457788887
Q ss_pred ccceeccccccCCCCEEEEEeCC---Cc--EEEEcCCCCCceeEEEeccccccEE--EEecCCCEEEEEeCC--------
Q 001039 838 KREVWDLVGDREDAGFFISGSTD---CL--VKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKVVSGSDD-------- 902 (1179)
Q Consensus 838 ~~~~~~~~~~s~d~~~Lasgs~D---g~--I~lWd~~~~~~~~~~~l~~h~~~v~--~~s~d~~~l~sgs~d-------- 902 (1179)
|||++|+.++.+ +. |.+||+. +.+.......+. +. +++|||+.|+.++.+
T Consensus 68 -----------pDg~~la~~~~~~~~~~~~l~~~~~~--~g~~~~l~~~~~--~~~~~wspdg~~l~~~~~~~~~~~~~~ 132 (347)
T 2gop_A 68 -----------PDGKKIAFMRANEEKKVSEIWVADLE--TLSSKKILEAKN--IRSLEWNEDSRKLLIVGFKRREDEDFI 132 (347)
T ss_dssp -----------TTSSEEEEEEEETTTTEEEEEEEETT--TTEEEEEEEESE--EEEEEECTTSSEEEEEEECCCC-----
T ss_pred -----------CCCCEEEEEEeccCCCcceEEEEECC--CCceEEEEcCCC--ccceeECCCCCEEEEEEccCCCcCCcE
Confidence 899999988754 33 7777765 333333333232 44 568999999888642
Q ss_pred -------------------CcEEEEECCCCeEEEEeecCCCcEEEEEEeCCCEEEEEEcCC-------eEEEEeCCCCeE
Q 001039 903 -------------------QSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDG-------TVKMWDVRTDTC 956 (1179)
Q Consensus 903 -------------------g~I~iwd~~t~~~~~~~~~h~~~V~~l~~s~~~~l~sgs~dg-------~I~iwd~~~~~~ 956 (1179)
..|.+||+.+++.+..+.. . .+..+.|+++..+++++.++ ...+|.+.+++.
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 210 (347)
T 2gop_A 133 FEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWEDGKE 210 (347)
T ss_dssp ----CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEETTEE
T ss_pred EEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCeEEEEEecccccccccccccEEEeCCCce
Confidence 5799999999887455554 3 78888999544666665542 334444335554
Q ss_pred EEEeccCCCcEEEEEEcCCCCEEEEEeCC--------CeEEEEeCCCCceeEEeecCCCCeEE-EEEcCCEEEEEeCCCc
Q 001039 957 VATVGRCSSAVLCMEYDDSTGILAAGGRD--------AVANIWDIRAGRQMHKFLGHTKWIRS-IRMDRDTVITGSDDWT 1027 (1179)
Q Consensus 957 ~~~~~~~~~~v~~l~~sp~~~~l~sgs~d--------g~I~iwD~~~~~~~~~~~~~~~~I~s-l~~~~~~l~sgs~dg~ 1027 (1179)
.. +..+ ..+..+ +|+|+.++.++.+ ..|.+|| +++......++...+.. +.|+...+++++.++.
T Consensus 211 ~~-l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~sdg~~~~~~~~~~ 284 (347)
T 2gop_A 211 EK-MFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKDGKVYFTLFEEGS 284 (347)
T ss_dssp EE-EEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEETTEEEEEEEETTE
T ss_pred EE-eccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEcCcEEEEEecCCc
Confidence 33 3333 455544 9999998887744 4788888 55544444455677775 7886227888899999
Q ss_pred EEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcE-EEEEcC
Q 001039 1028 ARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLL-RFWEND 1076 (1179)
Q Consensus 1028 I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I-~iwd~~ 1076 (1179)
+++| +.+++... +..+.+.|.+++|+| ..+++++.++.. .+|.++
T Consensus 285 ~~l~-~~~g~~~~-~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 285 VNLY-IWDGEIKP-IAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEE-EESSSEEE-EECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred EEEE-EcCCceEE-EecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 9999 88666543 444578899999999 677777777765 777765
No 182
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.47 E-value=1.2e-11 Score=141.02 Aligned_cols=261 Identities=9% Similarity=0.004 Sum_probs=176.5
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcE
Q 001039 889 INSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAV 967 (1179)
Q Consensus 889 ~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v 967 (1179)
+++++..++..+.++.++.| .++....+..+...+.+++|+ ++..++++..++.|.+||..+++.......+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~ 89 (333)
T 2dg1_A 13 YSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANP 89 (333)
T ss_dssp SCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSE
T ss_pred ecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCc
Confidence 45556666666778889999 456667777777788999998 56666677788999999999887665544556789
Q ss_pred EEEEEcCCCCEEEEEeCC----CeEEEEeCCCCceeEEee--cCCCCeEEEEEcCC--EEEEEeC------CCcEEEEEc
Q 001039 968 LCMEYDDSTGILAAGGRD----AVANIWDIRAGRQMHKFL--GHTKWIRSIRMDRD--TVITGSD------DWTARMWSI 1033 (1179)
Q Consensus 968 ~~l~~sp~~~~l~sgs~d----g~I~iwD~~~~~~~~~~~--~~~~~I~sl~~~~~--~l~sgs~------dg~I~iwd~ 1033 (1179)
.+++++++|++++++..+ +.|.+||..+++....+. .+...+.+++++++ .+++... .+.|..||.
T Consensus 90 ~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~ 169 (333)
T 2dg1_A 90 AAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSP 169 (333)
T ss_dssp EEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECT
T ss_pred ceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeC
Confidence 999999999988777666 689999998876543332 23457888998654 5554433 355666666
Q ss_pred cCCeeeEEeecCCcCEEEEEEecCCCEEEE-EeCCCcEEEEEcCCC-CcceEE-----EeecccCceE--EEEecCCCEE
Q 001039 1034 SRGTCDAVLACHAGPVQCVEYSSSDRGIIT-GSSDGLLRFWENDDA-GGIKCV-----KNVTIHSSAI--LSINAGDHWL 1104 (1179)
Q Consensus 1034 ~~~~~~~~~~~h~~~V~~l~~spdg~~l~s-gs~Dg~I~iwd~~~~-~~~~~~-----~~~~~h~~~i--~sis~dg~~l 1104 (1179)
.+++.... ..+...+..++|+|+|+.++. .+.++.|.+||..+. .....+ ....++ ..+ .+++++|++.
T Consensus 170 ~~~~~~~~-~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~ 247 (333)
T 2dg1_A 170 DFRTVTPI-IQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLY 247 (333)
T ss_dssp TSCCEEEE-EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEE
T ss_pred CCCEEEEe-ecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEE
Confidence 55554332 223446889999999986654 456789999999642 222211 111222 223 4557889988
Q ss_pred EEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeec---CCCcccEEEEEEcCCCCEEEEEeCC
Q 001039 1105 GIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTP---QKTVAVVRCIASDLERKRICSGGRN 1167 (1179)
Q Consensus 1105 asgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~---~~h~~~V~~v~fspdg~~Lasgs~D 1167 (1179)
++...++.|.+||.....+ ..+... .+|...+.+++|+||++.|+.++.+
T Consensus 248 v~~~~~~~v~~~d~~g~~~-------------~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 248 VAMYGQGRVLVFNKRGYPI-------------GQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEEETTTEEEEECTTSCEE-------------EEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred EEEcCCCEEEEECCCCCEE-------------EEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 8887889999999742211 111111 1233368899999998877766555
No 183
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.47 E-value=1.3e-11 Score=140.81 Aligned_cols=260 Identities=14% Similarity=0.105 Sum_probs=178.5
Q ss_pred ceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceeccccc
Q 001039 770 SWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGD 847 (1179)
Q Consensus 770 ~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~ 847 (1179)
.+..++|++++..++..+.+ ++.|. +. ....+.++...+.+++|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-------------------~~~~~~~~~~~~~~~~~~----------- 53 (333)
T 2dg1_A 7 DLPTLFYSGKSNSAVPIISESELQTIT---AE-------------------PWLEISKKGLQLEGLNFD----------- 53 (333)
T ss_dssp CCCBCCSCGGGGCSSCCCCGGGSCEEE---CE-------------------EEEEEESSCCCEEEEEEC-----------
T ss_pred ccceeeecCCccceeEEeecccCcccc---cc-------------------eeEEEeccCccccCcEEC-----------
Confidence 35567899999888776555 88893 22 456677777788999987
Q ss_pred cCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEE--EecCCCEEEEEeCC----CcEEEEECCCCeEEEEee-
Q 001039 848 REDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDD----QSVLVWDKQTSQLLEELK- 920 (1179)
Q Consensus 848 s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~--~s~d~~~l~sgs~d----g~I~iwd~~t~~~~~~~~- 920 (1179)
++|++++++..++.|.+||.. +.........+...+.+ ++++|+.++++..+ +.|.+||..+++....+.
T Consensus 54 -~~g~l~~~~~~~~~i~~~d~~--~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 130 (333)
T 2dg1_A 54 -RQGQLFLLDVFEGNIFKINPE--TKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIED 130 (333)
T ss_dssp -TTSCEEEEETTTCEEEEECTT--TCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECS
T ss_pred -CCCCEEEEECCCCEEEEEeCC--CCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEcc
Confidence 789988888889999999976 33333333244555664 47888877777666 689999998876543333
Q ss_pred -cCCCcEEEEEEeC-CCEEEEEEc------CCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEE-eCCCeEEEE
Q 001039 921 -GHDAQVSCVRMLS-GERVLTASH------DGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAG-GRDAVANIW 991 (1179)
Q Consensus 921 -~h~~~V~~l~~s~-~~~l~sgs~------dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sg-s~dg~I~iw 991 (1179)
.+...+.++++.+ +..+++... .+.|..+|..+++..... .....+..++|+|+++.++.+ +.++.|.+|
T Consensus 131 ~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~ 209 (333)
T 2dg1_A 131 LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVTETTANRLHRI 209 (333)
T ss_dssp SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEE
T ss_pred CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEee-cCCCcccceEECCCCCEEEEEeCCCCeEEEE
Confidence 2445788999984 554444432 356777777665544332 223457899999999866544 467899999
Q ss_pred eCCC-CceeEE--------eecCCCCeEEEEEc--CCEEEEEeCCCcEEEEEccCCeeeEEeecCCc------CEEEEEE
Q 001039 992 DIRA-GRQMHK--------FLGHTKWIRSIRMD--RDTVITGSDDWTARMWSISRGTCDAVLACHAG------PVQCVEY 1054 (1179)
Q Consensus 992 D~~~-~~~~~~--------~~~~~~~I~sl~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~------~V~~l~~ 1054 (1179)
|..+ +..... +.++ ..+..++++ ++++++...++.|.+||. +++....+..+.. .+.+++|
T Consensus 210 d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~ 287 (333)
T 2dg1_A 210 ALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQF 287 (333)
T ss_dssp EECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEE
T ss_pred EecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEE
Confidence 9964 333221 1112 356778885 446666677899999998 5666666654433 6899999
Q ss_pred ecCCCEEEEEeCCC
Q 001039 1055 SSSDRGIITGSSDG 1068 (1179)
Q Consensus 1055 spdg~~l~sgs~Dg 1068 (1179)
++|++.|+.++.++
T Consensus 288 ~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 288 IPGTNQLIICSNDI 301 (333)
T ss_dssp CTTSCEEEEEEECG
T ss_pred CCCCCEEEEEeCcc
Confidence 99988887666553
No 184
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.47 E-value=1.4e-11 Score=141.09 Aligned_cols=246 Identities=11% Similarity=0.072 Sum_probs=166.7
Q ss_pred CCCEEEEEe---------CCCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcC---C--eEEEEeCCCCeE
Q 001039 892 DRGKVVSGS---------DDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHD---G--TVKMWDVRTDTC 956 (1179)
Q Consensus 892 d~~~l~sgs---------~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~d---g--~I~iwd~~~~~~ 956 (1179)
||++++... .++.|.+||+.+++... + ..+..+.|+ +|+.++.++.+ + .|.+||+.+++.
T Consensus 23 dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~ 97 (347)
T 2gop_A 23 KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSS 97 (347)
T ss_dssp ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEE
T ss_pred CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCce
Confidence 676666542 25789999999887543 3 467889999 67888877654 3 488889988876
Q ss_pred EEEeccCCCcEEEEEEcCCCCEEEEEeCC---------------------------CeEEEEeCCCCceeEEeecCCCCe
Q 001039 957 VATVGRCSSAVLCMEYDDSTGILAAGGRD---------------------------AVANIWDIRAGRQMHKFLGHTKWI 1009 (1179)
Q Consensus 957 ~~~~~~~~~~v~~l~~sp~~~~l~sgs~d---------------------------g~I~iwD~~~~~~~~~~~~~~~~I 1009 (1179)
....... . +..++|+|+|+.|+.++.+ ..|.+||+.+++.+..+.. . .+
T Consensus 98 ~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~ 173 (347)
T 2gop_A 98 KKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RF 173 (347)
T ss_dssp EEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TT
T ss_pred EEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-Cc
Confidence 6555433 3 9999999999998887632 5799999998877455544 3 77
Q ss_pred EEEEEcCC-EEEEEeCCC-------cEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCC--------CcEEEE
Q 001039 1010 RSIRMDRD-TVITGSDDW-------TARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSD--------GLLRFW 1073 (1179)
Q Consensus 1010 ~sl~~~~~-~l~sgs~dg-------~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~D--------g~I~iw 1073 (1179)
..+.|+++ .++++..++ ...+|.+++++. ..+..+ ..+..+ +|||++|+.++.+ ..|.+|
T Consensus 174 ~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~ 249 (347)
T 2gop_A 174 SSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIY 249 (347)
T ss_dssp CEEEEETTEEEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEE
T ss_pred ccccCCCCeEEEEEecccccccccccccEEEeCCCce-EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEE
Confidence 78888665 555665442 345554445554 334434 555554 9999999887754 367777
Q ss_pred EcCCCCcceEEEeecccCceEE---EEecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEE
Q 001039 1074 ENDDAGGIKCVKNVTIHSSAIL---SINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVR 1150 (1179)
Q Consensus 1074 d~~~~~~~~~~~~~~~h~~~i~---sis~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~ 1150 (1179)
| + + ........+...+. .++ ++ ++++++.++.+++| +.+ | +.. ....+.+.|.
T Consensus 250 d--~-~--~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~---------g------~~~-~~~~~~~~v~ 305 (347)
T 2gop_A 250 D--G-K--EVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWD---------G------EIK-PIAKGRHWIM 305 (347)
T ss_dssp C--S-S--CEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EES---------S------SEE-EEECSSSEEE
T ss_pred C--C-C--ceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcC---------C------ceE-EEecCCCeEE
Confidence 7 3 2 22222334444554 346 77 88999999999999 862 2 111 1223467899
Q ss_pred EEEEcCCCCEEEEEeCCCcE-EEEECC
Q 001039 1151 CIASDLERKRICSGGRNGLL-RLWEAT 1176 (1179)
Q Consensus 1151 ~v~fspdg~~Lasgs~Dg~I-~vWdv~ 1176 (1179)
+++|+| .++++++.++.. ++|.++
T Consensus 306 ~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 306 GFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEESS--SEEEEEECSSSCCEEEEES
T ss_pred eeeeeC--cEEEEEcCCCChHHheEeC
Confidence 999999 677788777765 888764
No 185
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.46 E-value=1.2e-10 Score=135.06 Aligned_cols=268 Identities=10% Similarity=-0.031 Sum_probs=184.2
Q ss_pred ecCCCEEEEEeC--CC---cEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEE----------cCCeEEEEeCCC
Q 001039 890 NSDRGKVVSGSD--DQ---SVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTAS----------HDGTVKMWDVRT 953 (1179)
Q Consensus 890 s~d~~~l~sgs~--dg---~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs----------~dg~I~iwd~~~ 953 (1179)
.++++++++... .+ +|.+||..+++.+.++.....+ .++++ +++.++++. .++.|.+||..+
T Consensus 29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t 106 (373)
T 2mad_H 29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT 106 (373)
T ss_pred CCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC
Confidence 367777666653 22 8899999999998888755444 88898 677777775 367899999999
Q ss_pred CeEEEEeccC-------CCcEEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCceeEE-eecCCCCeEEEEEcCCEEEEEe
Q 001039 954 DTCVATVGRC-------SSAVLCMEYDDSTGILAAGGR--DAVANIWDIRAGRQMHK-FLGHTKWIRSIRMDRDTVITGS 1023 (1179)
Q Consensus 954 ~~~~~~~~~~-------~~~v~~l~~sp~~~~l~sgs~--dg~I~iwD~~~~~~~~~-~~~~~~~I~sl~~~~~~l~sgs 1023 (1179)
.+.+..+... ......++++|+|+++++++. ++.|.++| .+++.+.. +... ..+......+..+++.+
T Consensus 107 ~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~~~~~~~~~~~~~~~~~ 184 (373)
T 2mad_H 107 FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-TCYHIHPGAPSTFYLLC 184 (373)
T ss_pred CcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-ceEEEEeCCCceEEEEc
Confidence 8887776432 123458999999999998874 47899999 99988877 5432 22322223445777888
Q ss_pred CCCcEEEEEccCCeeeEEee-----cCCcC-EEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeec---------
Q 001039 1024 DDWTARMWSISRGTCDAVLA-----CHAGP-VQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVT--------- 1088 (1179)
Q Consensus 1024 ~dg~I~iwd~~~~~~~~~~~-----~h~~~-V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~--------- 1088 (1179)
.||.+.++|. +++...... ....+ .....+.+++..++..+.++.+.+.|+.... ...+..+.
T Consensus 185 ~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~-~~v~~~~~~~~~~~~~~ 262 (373)
T 2mad_H 185 AQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAG-ATNKAPIDALSGGRKAD 262 (373)
T ss_pred CCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCc-ceEeeeeeecCCccccc
Confidence 9999999999 877663322 11122 2334567776665555578899999987532 22222221
Q ss_pred ---ccCceEEEEecCCCEEEEEEC----------CCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEc
Q 001039 1089 ---IHSSAILSINAGDHWLGIGAA----------DNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASD 1155 (1179)
Q Consensus 1089 ---~h~~~i~sis~dg~~lasgs~----------Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fs 1155 (1179)
........++++++.+.++.. ++.|.++|..+. +...++. -.....+++|+
T Consensus 263 ~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~---------------~vv~~i~-~g~~p~~i~~s 326 (373)
T 2mad_H 263 TWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG---------------QTSSQIS-LGHDVDAISVA 326 (373)
T ss_pred ceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC---------------EEEEEEE-CCCCcCeEEEC
Confidence 111223567889888887653 357999998743 3333332 12247899999
Q ss_pred CCCC-EEEEEe-CCCcEEEEECCCCC
Q 001039 1156 LERK-RICSGG-RNGLLRLWEATINI 1179 (1179)
Q Consensus 1156 pdg~-~Lasgs-~Dg~I~vWdv~tg~ 1179 (1179)
|||+ +++++. .++.|.+||+.|++
T Consensus 327 ~Dg~~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 327 QDGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred CCCCeEEEEEcCCCCeEEEEECCCCC
Confidence 9999 788777 58999999999874
No 186
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.43 E-value=3.8e-11 Score=152.31 Aligned_cols=240 Identities=12% Similarity=0.075 Sum_probs=169.2
Q ss_pred cccCceEEEEeecccceeccccccCCCCEEEEEeCCC-----cEEEEcCCCCCceeEE-EeccccccEEEEecCCCEEEE
Q 001039 825 GHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDC-----LVKIWDPSLRGSELRA-TLKGHTRTVRAINSDRGKVVS 898 (1179)
Q Consensus 825 gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg-----~I~lWd~~~~~~~~~~-~l~~h~~~v~~~s~d~~~l~s 898 (1179)
+|...+.+++|| |||++||.++.++ +|++||+. +.+... .+......-.+|+|||+.|+.
T Consensus 122 ~~~~~~~~~~~S------------PDg~~la~~~~~~G~~~~~i~v~d~~--tg~~~~~~~~~~~~~~~~wspDg~~l~~ 187 (710)
T 2xdw_A 122 DGTVALRGYAFS------------EDGEYFAYGLSASGSDWVTIKFMKVD--GAKELPDVLERVKFSCMAWTHDGKGMFY 187 (710)
T ss_dssp TSCEEEEEEEEC------------TTSSEEEEEEEETTCSCEEEEEEETT--TTEEEEEEEEEECSCCEEECTTSSEEEE
T ss_pred CCCEEEEEEEEC------------CCCCEEEEEEcCCCCceEEEEEEECC--CCCCCcccccCcccceEEEEeCCCEEEE
Confidence 344567888887 8999999776543 89999987 333333 233222233478999999999
Q ss_pred EeCCCc----------------EEEEECCCCe----EEEEeecCCCcEEEEEEe-CCCEEEEEEc-----CCeEEEEeCC
Q 001039 899 GSDDQS----------------VLVWDKQTSQ----LLEELKGHDAQVSCVRML-SGERVLTASH-----DGTVKMWDVR 952 (1179)
Q Consensus 899 gs~dg~----------------I~iwd~~t~~----~~~~~~~h~~~V~~l~~s-~~~~l~sgs~-----dg~I~iwd~~ 952 (1179)
++.++. |++|++.+++ .+.....+...+..+.|+ ++++++.++. +..|.+||+.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~ 267 (710)
T 2xdw_A 188 NAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQ 267 (710)
T ss_dssp EECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGG
T ss_pred EEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECc
Confidence 988766 9999998875 222323345667889999 6788877665 5789999998
Q ss_pred C------Ce-EEEEeccCCCcEEEEEEcCCCCEEEEEeCC----CeEEEEeCCCCc--eeEEeecCCC--CeEEEEEc-C
Q 001039 953 T------DT-CVATVGRCSSAVLCMEYDDSTGILAAGGRD----AVANIWDIRAGR--QMHKFLGHTK--WIRSIRMD-R 1016 (1179)
Q Consensus 953 ~------~~-~~~~~~~~~~~v~~l~~sp~~~~l~sgs~d----g~I~iwD~~~~~--~~~~~~~~~~--~I~sl~~~-~ 1016 (1179)
+ +. ....+..+...+.. .|+++|+.++..+.. +.|.+||+.++. ....+..+.. .+.++++. +
T Consensus 268 ~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 346 (710)
T 2xdw_A 268 QESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRS 346 (710)
T ss_dssp GSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETT
T ss_pred ccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcC
Confidence 6 43 34445455444444 488888888776653 369999998874 2345555544 67778886 4
Q ss_pred C-EEEEEeCCCc--EEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEe----CCCcEEEEEcCCCC
Q 001039 1017 D-TVITGSDDWT--ARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGS----SDGLLRFWENDDAG 1079 (1179)
Q Consensus 1017 ~-~l~sgs~dg~--I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs----~Dg~I~iwd~~~~~ 1079 (1179)
+ ++++...|+. |.+||+.+|+....+..+.+.+..++++|+++.++... ..+.|+.||+.++.
T Consensus 347 ~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 347 NFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp TEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 4 6677777874 56677767887788887888899999999998766432 35789999998754
No 187
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.42 E-value=7.3e-12 Score=158.44 Aligned_cols=241 Identities=7% Similarity=-0.053 Sum_probs=164.4
Q ss_pred cccCceEEEEeecccceeccccccCCCCEEE-----EEeCCCcEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEEE
Q 001039 825 GHAGAITALHCVTKREVWDLVGDREDAGFFI-----SGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSG 899 (1179)
Q Consensus 825 gH~~~V~~v~~s~~~~~~~~~~~s~d~~~La-----sgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~sg 899 (1179)
+|...+.+++|| |||++|| +|+.+.+|++||+..........+.+....-.+|++||+.|+.+
T Consensus 118 ~~~~~~~~~~~S------------PDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~ 185 (695)
T 2bkl_A 118 DGTVSLGTWAVS------------WDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYE 185 (695)
T ss_dssp SSCEEEEEEEEC------------TTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEE
T ss_pred CCCEEEEEEEEC------------CCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEE
Confidence 466678888887 8999998 44556789999987332210112222221334789999999999
Q ss_pred eCCCc-------------EEEEECCCCe----EEEEeecCCCcEEEEEEe-CCCEEEEEEcCC----eEEEEeCCCCeEE
Q 001039 900 SDDQS-------------VLVWDKQTSQ----LLEELKGHDAQVSCVRML-SGERVLTASHDG----TVKMWDVRTDTCV 957 (1179)
Q Consensus 900 s~dg~-------------I~iwd~~t~~----~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg----~I~iwd~~~~~~~ 957 (1179)
+.|+. |++|++.+++ .+.....+...+..+.|+ +|++++.++.++ .|.+||..+++..
T Consensus 186 ~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~ 265 (695)
T 2bkl_A 186 WLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR 265 (695)
T ss_dssp ECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCE
T ss_pred EecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceE
Confidence 98876 9999998875 343444455678899999 688888777665 6788877666543
Q ss_pred EEeccCCCcEEEEEEcCCCCEEEEEe---CCCeEEEEeCCCCce--eEEeecC--CCCeEEEEEcCC-EEEEEeCCCcEE
Q 001039 958 ATVGRCSSAVLCMEYDDSTGILAAGG---RDAVANIWDIRAGRQ--MHKFLGH--TKWIRSIRMDRD-TVITGSDDWTAR 1029 (1179)
Q Consensus 958 ~~~~~~~~~v~~l~~sp~~~~l~sgs---~dg~I~iwD~~~~~~--~~~~~~~--~~~I~sl~~~~~-~l~sgs~dg~I~ 1029 (1179)
. +..+...+....+ ++|++++.+. .++.|.+||+.+++. ...+..+ ...+.++++.++ ++++...|+..+
T Consensus 266 ~-l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~ 343 (695)
T 2bkl_A 266 L-LVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSE 343 (695)
T ss_dssp E-EEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEE
T ss_pred E-eecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEE
Confidence 3 3344444555556 5555444443 258999999987753 2333333 446777888655 677888899888
Q ss_pred EEEcc-CCeeeEEeecC-CcCEEEEEEecCCCEEEEEe----CCCcEEEEEcCCCC
Q 001039 1030 MWSIS-RGTCDAVLACH-AGPVQCVEYSSSDRGIITGS----SDGLLRFWENDDAG 1079 (1179)
Q Consensus 1030 iwd~~-~~~~~~~~~~h-~~~V~~l~~spdg~~l~sgs----~Dg~I~iwd~~~~~ 1079 (1179)
+|.++ +++....+..+ .+.+..++++|+++.++... ..++|++||+.+++
T Consensus 344 l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 344 VRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 88765 46556666655 66788889999998777433 35789999998744
No 188
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.40 E-value=5e-11 Score=151.18 Aligned_cols=272 Identities=11% Similarity=-0.019 Sum_probs=178.4
Q ss_pred ecCCCEEEEEeCCC-----cEEEEECCCCeEEEEee------cCCCcEEEEEEe-CCCEEEEEEcCC-----eEEEEeCC
Q 001039 890 NSDRGKVVSGSDDQ-----SVLVWDKQTSQLLEELK------GHDAQVSCVRML-SGERVLTASHDG-----TVKMWDVR 952 (1179)
Q Consensus 890 s~d~~~l~sgs~dg-----~I~iwd~~t~~~~~~~~------~h~~~V~~l~~s-~~~~l~sgs~dg-----~I~iwd~~ 952 (1179)
.++|++++....++ .+.+.+..+++....+. +|...+..++|+ +|++++.++.++ .|++||+.
T Consensus 80 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~ 159 (710)
T 2xdw_A 80 FKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD 159 (710)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT
T ss_pred EEECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECC
Confidence 47888776554321 34444444444322221 233468889999 678887665543 89999999
Q ss_pred CCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCe----------------EEEEeCCCCcee--EEee--cCCCCeEEE
Q 001039 953 TDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAV----------------ANIWDIRAGRQM--HKFL--GHTKWIRSI 1012 (1179)
Q Consensus 953 ~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~----------------I~iwD~~~~~~~--~~~~--~~~~~I~sl 1012 (1179)
+++.......+ ..+..++|+|||+.|+.++.++. |++|++.+++.. ..+. .+...+.++
T Consensus 160 tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~ 238 (710)
T 2xdw_A 160 GAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGA 238 (710)
T ss_dssp TTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEE
T ss_pred CCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEE
Confidence 99876543221 22567999999999999887765 999999887632 2222 245567788
Q ss_pred EEcC--CEEEEEeC-----CCcEEEEEccC------Ce-eeEEeecCCcCEEEEEEecCCCEEEEEeCC----CcEEEEE
Q 001039 1013 RMDR--DTVITGSD-----DWTARMWSISR------GT-CDAVLACHAGPVQCVEYSSSDRGIITGSSD----GLLRFWE 1074 (1179)
Q Consensus 1013 ~~~~--~~l~sgs~-----dg~I~iwd~~~------~~-~~~~~~~h~~~V~~l~~spdg~~l~sgs~D----g~I~iwd 1074 (1179)
.|++ ++++.++. +..|++||+.+ +. ....+..+...+.. .|+++|+.|+..+.+ +.|.+||
T Consensus 239 ~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d 317 (710)
T 2xdw_A 239 ELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINID 317 (710)
T ss_dssp EECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEE
T ss_pred EEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEe
Confidence 8854 46666554 56899999987 53 45566666666655 588999988877653 3599999
Q ss_pred cCCCCcceEEEeecccCc--eEEEE--ecCCCEEEEEECCCcE--EEEeCCCCCcCcccCCCCccccceeeeecCCCccc
Q 001039 1075 NDDAGGIKCVKNVTIHSS--AILSI--NAGDHWLGIGAADNSM--SLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAV 1148 (1179)
Q Consensus 1075 ~~~~~~~~~~~~~~~h~~--~i~si--s~dg~~lasgs~Dg~I--~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~ 1148 (1179)
+.++... ....+..+.. .+..+ ++++.+++++..|+.. ++||+. +| +....+..+.+.
T Consensus 318 ~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~---------~g------~~~~~l~~~~~~ 381 (710)
T 2xdw_A 318 FTDPEES-KWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLA---------TG------ALLKIFPLEVGS 381 (710)
T ss_dssp TTSCCGG-GCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT---------TC------CEEEEECCCSSE
T ss_pred CCCCCcc-cceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECC---------CC------CEEEecCCCCce
Confidence 9874311 1222333332 44433 5577788888888854 555653 23 233344456778
Q ss_pred EEEEEEcCCCCEEEEE----eCCCcEEEEECCCCC
Q 001039 1149 VRCIASDLERKRICSG----GRNGLLRLWEATINI 1179 (1179)
Q Consensus 1149 V~~v~fspdg~~Lasg----s~Dg~I~vWdv~tg~ 1179 (1179)
|..++++|+++.++.. ...++|+.||+.+|.
T Consensus 382 v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 382 VVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 9999999999876633 245789999998763
No 189
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.40 E-value=1.3e-09 Score=121.37 Aligned_cols=273 Identities=11% Similarity=0.019 Sum_probs=181.6
Q ss_pred ccccEEEE--ecCCCEEEEEeCCCcEEEEECCCCeEEEE-eecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEE
Q 001039 882 HTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQLLEE-LKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCV 957 (1179)
Q Consensus 882 h~~~v~~~--s~d~~~l~sgs~dg~I~iwd~~t~~~~~~-~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~ 957 (1179)
+...+.++ .++|+..++...++.|.+||.. ++.... ...+...+.++++. ++..+++...++.|..||.. ++..
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~ 90 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIK 90 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEE
Confidence 33445544 6788877766668899999988 654332 23345678899997 45555555558899999986 4332
Q ss_pred -EEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE-eecCCCCeEEEEEcCC--EEEEEeCCCcEEEEEc
Q 001039 958 -ATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHK-FLGHTKWIRSIRMDRD--TVITGSDDWTARMWSI 1033 (1179)
Q Consensus 958 -~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~-~~~~~~~I~sl~~~~~--~l~sgs~dg~I~iwd~ 1033 (1179)
.........+.+++++++|+++++...++.|..||. +++.... .......+..++++++ .+++...++.|..||.
T Consensus 91 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~ 169 (299)
T 2z2n_A 91 EYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE 169 (299)
T ss_dssp EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred EEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC
Confidence 222234567899999999988887777889999998 5544332 2334557888888643 5555556789999998
Q ss_pred cCCeeeEE-eecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEE--ecCCCEEEEEECC
Q 001039 1034 SRGTCDAV-LACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAAD 1110 (1179)
Q Consensus 1034 ~~~~~~~~-~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~si--s~dg~~lasgs~D 1110 (1179)
+++.... ...+...+.+++++++|+..++...++.|.+||. ++. ...+ ....+...+.++ +++|++.++...+
T Consensus 170 -~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~-~~~~-~~~~~~~~~~~i~~~~~g~l~v~~~~~ 245 (299)
T 2z2n_A 170 -SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE-ITEF-KIPTPNARPHAITAGAGIDLWFTEWGA 245 (299)
T ss_dssp -TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC-EEEE-ECSSTTCCEEEEEECSTTCEEEEETTT
T ss_pred -CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCc-EEEE-ECCCCCCCceeEEECCCCCEEEeccCC
Confidence 6665433 3334567889999999997777767889999998 432 2222 222233445444 6788866666577
Q ss_pred CcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001039 1111 NSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATIN 1178 (1179)
Q Consensus 1111 g~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~tg 1178 (1179)
+.|..||.. ..+ ... ....+...+.++++ ++|++.++.+ .+.|..++.+++
T Consensus 246 ~~i~~~d~~-g~~-------------~~~-~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 246 NKIGRLTSN-NII-------------EEY-PIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp TEEEEEETT-TEE-------------EEE-ECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred ceEEEECCC-Cce-------------EEE-eCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 899999973 211 111 12234567899999 8888777665 566777777664
No 190
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.39 E-value=1.9e-09 Score=120.14 Aligned_cols=276 Identities=8% Similarity=-0.010 Sum_probs=182.3
Q ss_pred EecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEE--EecCCCEEEEEe
Q 001039 823 IRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGS 900 (1179)
Q Consensus 823 l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~--~s~d~~~l~sgs 900 (1179)
+..+...+.++++. ++|+++++...++.|.+||.. +.........+...+.+ +.++|...++..
T Consensus 10 ~~~~~~~~~~i~~d------------~~g~l~v~~~~~~~v~~~d~~--~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~ 75 (299)
T 2z2n_A 10 LTNQDTGPYGITVS------------DKGKVWITQHKANMISCINLD--GKITEYPLPTPDAKVMCLTISSDGEVWFTEN 75 (299)
T ss_dssp CCSSSCCEEEEEEC------------TTSCEEEEETTTTEEEEECTT--CCEEEEECSSTTCCEEEEEECTTSCEEEEET
T ss_pred CCCcCCCccceEEC------------CCCCEEEEecCCCcEEEEcCC--CCeEEecCCcccCceeeEEECCCCCEEEeCC
Confidence 33455678888886 788888777768899999965 22222222233445554 467888777777
Q ss_pred CCCcEEEEECCCCeEE-EEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEE-eccCCCcEEEEEEcCCCC
Q 001039 901 DDQSVLVWDKQTSQLL-EELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVAT-VGRCSSAVLCMEYDDSTG 977 (1179)
Q Consensus 901 ~dg~I~iwd~~t~~~~-~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~-~~~~~~~v~~l~~sp~~~ 977 (1179)
.++.|..||.. ++.. .........+.++++. ++..+++...++.|..||. +++.... .......+..++++++|+
T Consensus 76 ~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~ 153 (299)
T 2z2n_A 76 AANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNA 153 (299)
T ss_dssp TTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSC
T ss_pred CCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCC
Confidence 78899999986 4432 2222345678889988 4555555556889999998 5554433 233456789999999998
Q ss_pred EEEEEeCCCeEEEEeCCCCceeEE-eecCCCCeEEEEEcC--CEEEEEeCCCcEEEEEccCCeeeEE-eecCCcCEEEEE
Q 001039 978 ILAAGGRDAVANIWDIRAGRQMHK-FLGHTKWIRSIRMDR--DTVITGSDDWTARMWSISRGTCDAV-LACHAGPVQCVE 1053 (1179)
Q Consensus 978 ~l~sgs~dg~I~iwD~~~~~~~~~-~~~~~~~I~sl~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~-~~~h~~~V~~l~ 1053 (1179)
.+++...++.|..||. +++.... .......+.++++++ +..++...++.|..||. +++.... ...+...+.+++
T Consensus 154 l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~ 231 (299)
T 2z2n_A 154 LWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAIT 231 (299)
T ss_dssp EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEE
T ss_pred EEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEE
Confidence 8777767789999998 6655432 333455688888864 45555556789999998 6654332 233456799999
Q ss_pred EecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEEe-cCCCEEEEEECCCcEEEEeCCC
Q 001039 1054 YSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSIN-AGDHWLGIGAADNSMSLFHRPQ 1120 (1179)
Q Consensus 1054 ~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis-~dg~~lasgs~Dg~I~iwd~~~ 1120 (1179)
++++|+..++...++.|..||... ....+ ....+...+.++. ++|.+.++. ..+.+..++..+
T Consensus 232 ~~~~g~l~v~~~~~~~i~~~d~~g--~~~~~-~~~~~~~~~~~i~~~~g~l~v~~-~~~~l~~~~~~~ 295 (299)
T 2z2n_A 232 AGAGIDLWFTEWGANKIGRLTSNN--IIEEY-PIQIKSAEPHGICFDGETIWFAM-ECDKIGKLTLIK 295 (299)
T ss_dssp ECSTTCEEEEETTTTEEEEEETTT--EEEEE-ECSSSSCCEEEEEECSSCEEEEE-TTTEEEEEEEC-
T ss_pred ECCCCCEEEeccCCceEEEECCCC--ceEEE-eCCCCCCccceEEecCCCEEEEe-cCCcEEEEEcCc
Confidence 999999777666788999999832 12222 1223333343332 666655554 467777777753
No 191
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.39 E-value=6.1e-11 Score=132.90 Aligned_cols=240 Identities=7% Similarity=-0.028 Sum_probs=163.8
Q ss_pred eEEEEeecCCCcEEEEEEe-CCC-EEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 001039 914 QLLEELKGHDAQVSCVRML-SGE-RVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIW 991 (1179)
Q Consensus 914 ~~~~~~~~h~~~V~~l~~s-~~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iw 991 (1179)
..+..+..+.....+++|+ +++ .++++..++.|..||..++ ...+..+...+.+++++++|+++++...++.|.+|
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQ 95 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEE
T ss_pred CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEE
Confidence 3344455556677889998 566 6778888999999999887 55665677789999999999988777677899999
Q ss_pred eCCCCceeEEeecC----CCCeEEEEEcC--CEEEE----Ee-------------CCCcEEEEEccCCeeeEEeecCCcC
Q 001039 992 DIRAGRQMHKFLGH----TKWIRSIRMDR--DTVIT----GS-------------DDWTARMWSISRGTCDAVLACHAGP 1048 (1179)
Q Consensus 992 D~~~~~~~~~~~~~----~~~I~sl~~~~--~~l~s----gs-------------~dg~I~iwd~~~~~~~~~~~~h~~~ 1048 (1179)
|..+++........ ...+..+++++ +++++ |+ ..+.|..++.. ++ ...+..+...
T Consensus 96 d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~ 173 (296)
T 3e5z_A 96 REPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVK 173 (296)
T ss_dssp CSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSS
T ss_pred cCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCC
Confidence 99888754433221 22456677754 46665 22 13455556554 44 3444556677
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcc-eEEEeecccCce--EEEEecCCCEEEEEECCCcEEEEeCCCCCcCc
Q 001039 1049 VQCVEYSSSDRGIITGSSDGLLRFWENDDAGGI-KCVKNVTIHSSA--ILSINAGDHWLGIGAADNSMSLFHRPQERLGG 1125 (1179)
Q Consensus 1049 V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~-~~~~~~~~h~~~--i~sis~dg~~lasgs~Dg~I~iwd~~~~~~~~ 1125 (1179)
...++|+|+|+.+++.+.++.|.+||+...+.. .....+..+... -.+++++|++.++. ++.|.+||...
T Consensus 174 ~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~g----- 246 (296)
T 3e5z_A 174 PNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPDG----- 246 (296)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTTS-----
T ss_pred CccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCCC-----
Confidence 899999999999977778899999999732323 112222222222 25678899876665 78999999752
Q ss_pred ccCCCCccccceeeeecCCCcccEEEEEE-cCCCCEEEEEeCCCcEEEEECCC
Q 001039 1126 FSGTGSKMSGWQLYRTPQKTVAVVRCIAS-DLERKRICSGGRNGLLRLWEATI 1177 (1179)
Q Consensus 1126 ~~~~g~~~~~~~~~~~~~~h~~~V~~v~f-spdg~~Lasgs~Dg~I~vWdv~t 1177 (1179)
+.......+.. +++++| +||++.|++++.+| +.-++.++
T Consensus 247 -----------~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~ 286 (296)
T 3e5z_A 247 -----------DELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNV 286 (296)
T ss_dssp -----------CEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSC
T ss_pred -----------CEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEccc
Confidence 23333444555 889999 68999999888775 33344444
No 192
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.39 E-value=2e-10 Score=131.80 Aligned_cols=268 Identities=11% Similarity=0.014 Sum_probs=188.6
Q ss_pred ecCCCEEEEEeC-----CCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEE----------cCCeEEEEeCCC
Q 001039 890 NSDRGKVVSGSD-----DQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTAS----------HDGTVKMWDVRT 953 (1179)
Q Consensus 890 s~d~~~l~sgs~-----dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs----------~dg~I~iwd~~~ 953 (1179)
.|+++.+++... ++.|.+.|..+++.+.++.....+ . ++++ +++++++++ .++.|.+||..+
T Consensus 41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t 118 (386)
T 3sjl_D 41 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT 118 (386)
T ss_dssp CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred CCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCC
Confidence 689999888876 689999999999999999865555 4 8888 677777665 367899999999
Q ss_pred CeEEEEeccCC-------CcEEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCceeEEeecCCCCeEEEEE-cCCEEEEEe
Q 001039 954 DTCVATVGRCS-------SAVLCMEYDDSTGILAAGGR--DAVANIWDIRAGRQMHKFLGHTKWIRSIRM-DRDTVITGS 1023 (1179)
Q Consensus 954 ~~~~~~~~~~~-------~~v~~l~~sp~~~~l~sgs~--dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~-~~~~l~sgs 1023 (1179)
++.+.++.-.. .....++++|||++++++.. ++.|.++|+.+++.+.++..... ..+.. ....+++.+
T Consensus 119 ~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~~~~~ 196 (386)
T 3sjl_D 119 LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTFFMHC 196 (386)
T ss_dssp CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEE
T ss_pred CeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc--ceeecCCCceeEEEC
Confidence 99888874321 24567999999999998874 68999999999999988854321 22222 455778889
Q ss_pred CCCcEEEEEccC-CeeeEEeecC----CcCEE-EEEEe-cCCCEEEEEeCCCcEEEEEcCCCCcceEEEeec--------
Q 001039 1024 DDWTARMWSISR-GTCDAVLACH----AGPVQ-CVEYS-SSDRGIITGSSDGLLRFWENDDAGGIKCVKNVT-------- 1088 (1179)
Q Consensus 1024 ~dg~I~iwd~~~-~~~~~~~~~h----~~~V~-~l~~s-pdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~-------- 1088 (1179)
.||++.+.++.+ ++.......+ ..++. ...|. ++|++++ .+.+|.|++.|..+.. ......+.
T Consensus 197 ~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~-~~v~~~~~~~~~~~~~ 274 (386)
T 3sjl_D 197 RDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGD-AKFLPAVEALTEAERA 274 (386)
T ss_dssp TTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSS-CEECCCEESSCHHHHH
T ss_pred CCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCc-ceeecceecccccccc
Confidence 999999999976 5543322111 12221 24665 5776555 5568999999987632 22222221
Q ss_pred ----ccCceEEEEecCCCEEEEEEC----------CCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEE
Q 001039 1089 ----IHSSAILSINAGDHWLGIGAA----------DNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIAS 1154 (1179)
Q Consensus 1089 ----~h~~~i~sis~dg~~lasgs~----------Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~f 1154 (1179)
.......+++++++.+++... .+.|.+.|+.+.+ .+..+.- ...++++++
T Consensus 275 ~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k---------------v~~~i~v-g~~~~~lav 338 (386)
T 3sjl_D 275 DGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE---------------RLAKFEM-GHEIDSINV 338 (386)
T ss_dssp TTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC---------------EEEEEEE-EEEECEEEE
T ss_pred ccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCe---------------EEEEEEC-CCCcceEEE
Confidence 223345777899988888653 2578999988442 2222211 125789999
Q ss_pred cCCCC-EEEEE-eCCCcEEEEECCCCC
Q 001039 1155 DLERK-RICSG-GRNGLLRLWEATINI 1179 (1179)
Q Consensus 1155 spdg~-~Lasg-s~Dg~I~vWdv~tg~ 1179 (1179)
++|++ +|+++ ..++.|.++|..|++
T Consensus 339 s~D~~~~ly~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 339 SQDEKPLLYALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp CSSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred CCCCCeEEEEEcCCCCeEEEEECCCCc
Confidence 99997 66664 558999999999885
No 193
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.37 E-value=4.5e-10 Score=130.51 Aligned_cols=295 Identities=11% Similarity=0.040 Sum_probs=192.0
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCceeEEEeccc---------cccE-EEEecCCCEEEEEeCCCcEEEEECCCCeEEEEee
Q 001039 851 AGFFISGSTDCLVKIWDPSLRGSELRATLKGH---------TRTV-RAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELK 920 (1179)
Q Consensus 851 ~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h---------~~~v-~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~ 920 (1179)
+..++.++.++.|..+|... .+.+...... ...+ .....++..+++++.++.|..+|..+|+.+....
T Consensus 53 ~~~v~~~~~~g~v~a~d~~t--G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADD--GKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp TTEEEEECTTSEEEEEETTT--CCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEcCCCeEEEEEccC--CceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 66777888889999999762 3333333221 1222 2345567889999999999999999999988776
Q ss_pred cCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcE-----EEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 001039 921 GHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAV-----LCMEYDDSTGILAAGGRDAVANIWDIRA 995 (1179)
Q Consensus 921 ~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v-----~~l~~sp~~~~l~sgs~dg~I~iwD~~~ 995 (1179)
........... .++.+++++.++.|..+|..+|+.+.......... ...... +..+++++.+|.+..+|..+
T Consensus 131 ~~~~~~~~p~~-~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~t 207 (376)
T 3q7m_A 131 VAGEALSRPVV-SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQ 207 (376)
T ss_dssp CSSCCCSCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTT
T ss_pred CCCceEcCCEE-ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCC
Confidence 54332222222 35688889999999999999999887765432111 112222 45677888899999999999
Q ss_pred CceeEEeecCCCC----------e-EEEEEcCCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEE
Q 001039 996 GRQMHKFLGHTKW----------I-RSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITG 1064 (1179)
Q Consensus 996 ~~~~~~~~~~~~~----------I-~sl~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sg 1064 (1179)
|+.+......... + ......++.++.++.++.+..+|.++|+.+..... .....+.. ++..++.+
T Consensus 208 G~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~ 283 (376)
T 3q7m_A 208 GQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLV 283 (376)
T ss_dssp CCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ETTEEEEE
T ss_pred CcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE--ECCEEEEE
Confidence 9988776432110 1 12233567888888999999999999998776552 33444444 36788888
Q ss_pred eCCCcEEEEEcCCCCcceEEEeec-ccCceEEEEecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecC
Q 001039 1065 SSDGLLRFWENDDAGGIKCVKNVT-IHSSAILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQ 1143 (1179)
Q Consensus 1065 s~Dg~I~iwd~~~~~~~~~~~~~~-~h~~~i~sis~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~ 1143 (1179)
+.+|.+..+|..+++. ..... .......+....+..|++++.+|.++.+|..+++ .+ |. ..
T Consensus 284 ~~~g~l~~~d~~tG~~---~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~---------~~--~~----~~ 345 (376)
T 3q7m_A 284 DQNDRVMALTIDGGVT---LWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGR---------FV--AQ----QK 345 (376)
T ss_dssp ETTCCEEEEETTTCCE---EEEECTTTTSCCCCCEEETTEEEEECTTSEEEEEETTTCC---------EE--EE----EE
T ss_pred cCCCeEEEEECCCCcE---EEeecccCCCcccCCEEECCEEEEEeCCCeEEEEECCCCc---------EE--EE----Ee
Confidence 8999999999988542 22222 1111122222346788889999999999987432 11 11 11
Q ss_pred CCcccEE-EEEEcCCCCEEEEEeCCCcEEEEE
Q 001039 1144 KTVAVVR-CIASDLERKRICSGGRNGLLRLWE 1174 (1179)
Q Consensus 1144 ~h~~~V~-~v~fspdg~~Lasgs~Dg~I~vWd 1174 (1179)
.....+. .... .+..|+.++.||.|..|+
T Consensus 346 ~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 346 VDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp CCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred cCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 1111111 1111 255788899999999987
No 194
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.35 E-value=2.3e-10 Score=126.95 Aligned_cols=209 Identities=9% Similarity=-0.008 Sum_probs=161.0
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCCceeEEEecccc-ccE--EEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCC-C
Q 001039 849 EDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHT-RTV--RAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHD-A 924 (1179)
Q Consensus 849 ~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~-~~v--~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~-~ 924 (1179)
..+++|++++.|+.|.+||.. +.+.+..+..+. ..+ ..++++|+.++ +.++.|..||. +|+.+..+..+. .
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~--tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~ 77 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKD--TKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGC 77 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETT--TTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTC
T ss_pred CCCcEEEeeCCCCEEEEEECC--CCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCc
Confidence 457899999999999999964 455666776654 222 35689999888 45788999999 899999998753 4
Q ss_pred cEEEEEEe-CCCEEEEEEc-CCeEEEEeCCCCeEEEEecc------CCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 001039 925 QVSCVRML-SGERVLTASH-DGTVKMWDVRTDTCVATVGR------CSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAG 996 (1179)
Q Consensus 925 ~V~~l~~s-~~~~l~sgs~-dg~I~iwd~~~~~~~~~~~~------~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~ 996 (1179)
.+.++.+. +++.+++.+. ++.|..+|. +|+.+..+.. +......++..++|+++++...++.|..||.. |
T Consensus 78 ~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G 155 (276)
T 3no2_A 78 EMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G 155 (276)
T ss_dssp EEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred cccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C
Confidence 67778777 7888888777 788888885 6777766532 11234566789999999999999999999988 9
Q ss_pred ceeEEeecCCCCeEEEEE--cCCEEEEEeCCCcEEEEEccCCeeeEEeecCC------cCEEEEEEecCCCEEEEEe
Q 001039 997 RQMHKFLGHTKWIRSIRM--DRDTVITGSDDWTARMWSISRGTCDAVLACHA------GPVQCVEYSSSDRGIITGS 1065 (1179)
Q Consensus 997 ~~~~~~~~~~~~I~sl~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~------~~V~~l~~spdg~~l~sgs 1065 (1179)
+.+.++.... ...++.. +++.+++++.++.|..+|..+|+.+.++..+. ..+.+++..++|+.+++..
T Consensus 156 ~~~w~~~~~~-~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 156 QLLNSVKLSG-TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp CEEEEEECSS-CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred CEEEEEECCC-CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 9998886653 3444444 56688888888899999999999999887432 2378888889998888764
No 195
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.34 E-value=1.5e-10 Score=128.53 Aligned_cols=214 Identities=7% Similarity=-0.007 Sum_probs=157.3
Q ss_pred eCCCEEEEEEcCCeEEEEeCCCCeEEEEeccCC-CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCC-CCe
Q 001039 932 LSGERVLTASHDGTVKMWDVRTDTCVATVGRCS-SAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHT-KWI 1009 (1179)
Q Consensus 932 s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~-~~I 1009 (1179)
++++.+++++.++.|.+||.++|+.+.++..+. ..+.++.++|+|++++ +.++.|..||. +++.+.++..+. ..+
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 367889999999999999999999999987765 4788999999999888 45788999998 899999887653 467
Q ss_pred EEEEE--cCCEEEEEeC-CCcEEEEEccCCeeeEEeec------CCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCc
Q 001039 1010 RSIRM--DRDTVITGSD-DWTARMWSISRGTCDAVLAC------HAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGG 1080 (1179)
Q Consensus 1010 ~sl~~--~~~~l~sgs~-dg~I~iwd~~~~~~~~~~~~------h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~ 1080 (1179)
.++.+ +++.+++.+. ++.|..+|. +|+.+..+.. +......++..++|+++++.+.++.|..||.+ ++.
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~ 157 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQL 157 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCE
Confidence 77776 5668888777 788888885 6777766642 22345567789999999999999999999987 443
Q ss_pred ceEEEeecccC-ceEEEEecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeee-cC-CCcccEEEEEEcCC
Q 001039 1081 IKCVKNVTIHS-SAILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRT-PQ-KTVAVVRCIASDLE 1157 (1179)
Q Consensus 1081 ~~~~~~~~~h~-~~i~sis~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~-~~-~h~~~V~~v~fspd 1157 (1179)
+..+.... ..-....++|+.+++++.++.|..+|..+ |+.+ |+.-.. .. .....+.+++..++
T Consensus 158 ---~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~t---------G~~~--w~~~~~~~~~~~l~~~~~~~~~~~ 223 (276)
T 3no2_A 158 ---LNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLES---------NRIV--RRVNANDIEGVQLFFVAQLFPLQN 223 (276)
T ss_dssp ---EEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTT---------CCEE--EEEEGGGSBSCCCSEEEEEEECTT
T ss_pred ---EEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcC---------CcEE--EEecCCCCCCccccccccceEcCC
Confidence 33333222 11234468899999998888999999873 3221 222111 01 12234778888888
Q ss_pred CCEEEEE
Q 001039 1158 RKRICSG 1164 (1179)
Q Consensus 1158 g~~Lasg 1164 (1179)
|+.+++.
T Consensus 224 G~i~v~~ 230 (276)
T 3no2_A 224 GGLYICN 230 (276)
T ss_dssp SCEEEEE
T ss_pred CCEEEEe
Confidence 8888776
No 196
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.34 E-value=2.8e-11 Score=153.05 Aligned_cols=267 Identities=9% Similarity=-0.036 Sum_probs=173.5
Q ss_pred CCCCEEEEEeCCC---cEEEEcCCCCCceeEEEec------cccccEE--EEecCCCEEEE-----EeCCCcEEEEECCC
Q 001039 849 EDAGFFISGSTDC---LVKIWDPSLRGSELRATLK------GHTRTVR--AINSDRGKVVS-----GSDDQSVLVWDKQT 912 (1179)
Q Consensus 849 ~d~~~Lasgs~Dg---~I~lWd~~~~~~~~~~~l~------~h~~~v~--~~s~d~~~l~s-----gs~dg~I~iwd~~t 912 (1179)
++|++++....++ .-.+|-....+......+. +|...+. ++||||++|+. |+.+.+|++||+.+
T Consensus 77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t 156 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS 156 (695)
T ss_dssp EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC
Confidence 7888887766544 3444543222232222222 3443444 57999999984 44457899999999
Q ss_pred CeEEEEeecCCCcE--EEEEEe-CCCEEEEEEcCCe-------------EEEEeCCCCe----EEEEeccCCCcEEEEEE
Q 001039 913 SQLLEELKGHDAQV--SCVRML-SGERVLTASHDGT-------------VKMWDVRTDT----CVATVGRCSSAVLCMEY 972 (1179)
Q Consensus 913 ~~~~~~~~~h~~~V--~~l~~s-~~~~l~sgs~dg~-------------I~iwd~~~~~----~~~~~~~~~~~v~~l~~ 972 (1179)
++.+. ..+...+ ..++|+ +++.|+.++.|.. |++|++.++. .+.....+...+.++.|
T Consensus 157 g~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~ 234 (695)
T 2bkl_A 157 GEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDL 234 (695)
T ss_dssp CCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEE
T ss_pred CCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEE
Confidence 88641 1122222 678899 6788998888776 9999998876 23333345567899999
Q ss_pred cCCCCEEEEEeCCC----eEEEEeCCCCceeEEeecCCCCeEEEEE-cCCEEEEEeC----CCcEEEEEccCCee---eE
Q 001039 973 DDSTGILAAGGRDA----VANIWDIRAGRQMHKFLGHTKWIRSIRM-DRDTVITGSD----DWTARMWSISRGTC---DA 1040 (1179)
Q Consensus 973 sp~~~~l~sgs~dg----~I~iwD~~~~~~~~~~~~~~~~I~sl~~-~~~~l~sgs~----dg~I~iwd~~~~~~---~~ 1040 (1179)
+|||++++.++.++ .|.+||..+++ ...+..+...+....+ +++ ++..+. ++.|.+||+.++.. ..
T Consensus 235 SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~ 312 (695)
T 2bkl_A 235 SRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKE 312 (695)
T ss_dssp CTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEEETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEE
T ss_pred CCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeE
Confidence 99999998887666 77888766554 3444455555554444 555 444443 58899999988753 33
Q ss_pred EeecC-CcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeeccc-CceEEEE--ecCCCEEEEEE----CCCc
Q 001039 1041 VLACH-AGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIH-SSAILSI--NAGDHWLGIGA----ADNS 1112 (1179)
Q Consensus 1041 ~~~~h-~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h-~~~i~si--s~dg~~lasgs----~Dg~ 1112 (1179)
.+..+ ...+..++++ ++..+++...|+..++|.++..+ .....+..+ ...+..+ +++++.++... ..++
T Consensus 313 l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g--~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~ 389 (695)
T 2bkl_A 313 IVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKG--KPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQ 389 (695)
T ss_dssp EECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC--CEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEE
T ss_pred EecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC--CeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCE
Confidence 33333 4568888998 77788889999998888766322 233444443 4445444 67887776433 3478
Q ss_pred EEEEeCCCCC
Q 001039 1113 MSLFHRPQER 1122 (1179)
Q Consensus 1113 I~iwd~~~~~ 1122 (1179)
|++||+.+++
T Consensus 390 v~~~d~~~g~ 399 (695)
T 2bkl_A 390 IYKTSVSTGK 399 (695)
T ss_dssp EEEEETTTCC
T ss_pred EEEEECCCCc
Confidence 9999997543
No 197
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.34 E-value=3.8e-10 Score=128.66 Aligned_cols=252 Identities=8% Similarity=-0.012 Sum_probs=170.1
Q ss_pred CCCcEEEEcCCCCCceeEEEec------cccccEEEEecCCCEEE-EEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEE
Q 001039 859 TDCLVKIWDPSLRGSELRATLK------GHTRTVRAINSDRGKVV-SGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRM 931 (1179)
Q Consensus 859 ~Dg~I~lWd~~~~~~~~~~~l~------~h~~~v~~~s~d~~~l~-sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~ 931 (1179)
.+++|.+||.. +.+....+. ........+..+++.++ +...++.|.+||..+++.+.++.. ......+++
T Consensus 15 ~~~~l~~~d~~--t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~ 91 (328)
T 3dsm_A 15 SNATLSYYDPA--TCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHF 91 (328)
T ss_dssp CCBEEEEEETT--TTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEE
T ss_pred CCceEEEEECC--CCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEE
Confidence 48899999976 333332221 11122344444455554 445578999999999999988863 466888999
Q ss_pred eCCCEEEEEE-cCCeEEEEeCCCCeEEEEeccCC-----CcEEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCceeEEee
Q 001039 932 LSGERVLTAS-HDGTVKMWDVRTDTCVATVGRCS-----SAVLCMEYDDSTGILAAGG--RDAVANIWDIRAGRQMHKFL 1003 (1179)
Q Consensus 932 s~~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~~-----~~v~~l~~sp~~~~l~sgs--~dg~I~iwD~~~~~~~~~~~ 1003 (1179)
+++..++++. .++.|.+||..+++....+.... .....+++ ++..+.+++ .++.|.+||..+++.+..+.
T Consensus 92 ~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~ 169 (328)
T 3dsm_A 92 LSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELT 169 (328)
T ss_dssp EETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEE
T ss_pred eCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEE
Confidence 6434666666 89999999999999887765322 14456677 344555554 48899999999998887775
Q ss_pred cCCCCeEEEEEcC--CEEEEEeCC----------CcEEEEEccCCeeeEEeecC-CcCEEEEEEecCCCEEEEEeCCCcE
Q 001039 1004 GHTKWIRSIRMDR--DTVITGSDD----------WTARMWSISRGTCDAVLACH-AGPVQCVEYSSSDRGIITGSSDGLL 1070 (1179)
Q Consensus 1004 ~~~~~I~sl~~~~--~~l~sgs~d----------g~I~iwd~~~~~~~~~~~~h-~~~V~~l~~spdg~~l~sgs~Dg~I 1070 (1179)
.. .....+.+++ ++++++..+ +.|.+||..+++....+... ......++++|+++.++++.. .|
T Consensus 170 ~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v 246 (328)
T 3dsm_A 170 IG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DI 246 (328)
T ss_dssp CS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SE
T ss_pred cC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EE
Confidence 43 3345677754 344444443 78999999999887776533 246899999999999988765 89
Q ss_pred EEEEcCCCCcceEEEeec--ccCceEEEEec-CCCEEEEE----ECCCcEEEEeCC
Q 001039 1071 RFWENDDAGGIKCVKNVT--IHSSAILSINA-GDHWLGIG----AADNSMSLFHRP 1119 (1179)
Q Consensus 1071 ~iwd~~~~~~~~~~~~~~--~h~~~i~sis~-dg~~lasg----s~Dg~I~iwd~~ 1119 (1179)
.+||..++.... ..... +....-.+++| ++.+.++. ..++.|.+||..
T Consensus 247 ~~~d~~t~~~~~-~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 247 WRMPVEADRVPV-RPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp EEEETTCSSCCS-SCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred EEEECCCCceee-eeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 999998744211 11111 11222356677 55555555 578999999986
No 198
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.33 E-value=2.3e-10 Score=128.16 Aligned_cols=237 Identities=9% Similarity=-0.002 Sum_probs=166.8
Q ss_pred ceEEEecccCceEEEEeecccceeccccccCCCC-EEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEE--EecCCCE
Q 001039 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAG-FFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGK 895 (1179)
Q Consensus 819 ~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~-~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~--~s~d~~~ 895 (1179)
.+..+..+.....+++|+ ++++ +++++..++.|..||... . ...+..+...+.+ ++++|+.
T Consensus 19 ~~~~l~~~~~~~eg~~~d------------~~g~~l~~~~~~~~~i~~~~~~~--~--~~~~~~~~~~~~~l~~~~dg~l 82 (296)
T 3e5z_A 19 EARRLADGFTWTEGPVYV------------PARSAVIFSDVRQNRTWAWSDDG--Q--LSPEMHPSHHQNGHCLNKQGHL 82 (296)
T ss_dssp CCEEEECCCSSEEEEEEE------------GGGTEEEEEEGGGTEEEEEETTS--C--EEEEESSCSSEEEEEECTTCCE
T ss_pred cEEEEecCCccccCCeEe------------CCCCEEEEEeCCCCEEEEEECCC--C--eEEEECCCCCcceeeECCCCcE
Confidence 456666777778889987 7887 788888899999999762 2 3445555555654 5788988
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEeecC----CCcEEEEEEe-CCCEEEE----EE-------------cCCeEEEEeCCC
Q 001039 896 VVSGSDDQSVLVWDKQTSQLLEELKGH----DAQVSCVRML-SGERVLT----AS-------------HDGTVKMWDVRT 953 (1179)
Q Consensus 896 l~sgs~dg~I~iwd~~t~~~~~~~~~h----~~~V~~l~~s-~~~~l~s----gs-------------~dg~I~iwd~~~ 953 (1179)
+++...++.|.+||..+++........ ...+..+++. +|..+++ |+ ..+.|..+|..
T Consensus 83 ~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~- 161 (296)
T 3e5z_A 83 IACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD- 161 (296)
T ss_dssp EEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-
T ss_pred EEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-
Confidence 777777789999999888765443221 1245678888 5666665 32 13466666665
Q ss_pred CeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCce---eEEeecCCCCeEEEEEcCC-EEEEEeCCCcE
Q 001039 954 DTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIR-AGRQ---MHKFLGHTKWIRSIRMDRD-TVITGSDDWTA 1028 (1179)
Q Consensus 954 ~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~-~~~~---~~~~~~~~~~I~sl~~~~~-~l~sgs~dg~I 1028 (1179)
++. ..+..+......++|+|+++.+++.+.++.|.+||+. +++. ...+..+...+..++++++ .+.++. ++.|
T Consensus 162 g~~-~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v 239 (296)
T 3e5z_A 162 GTL-SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGV 239 (296)
T ss_dssp SCE-EEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEE
T ss_pred CCE-EEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeE
Confidence 443 3344555677899999999988777778999999987 4544 2333334455677888643 344444 8899
Q ss_pred EEEEccCCeeeEEeecCCcCEEEEEE-ecCCCEEEEEeCCCcEEEEEcCC
Q 001039 1029 RMWSISRGTCDAVLACHAGPVQCVEY-SSSDRGIITGSSDGLLRFWENDD 1077 (1179)
Q Consensus 1029 ~iwd~~~~~~~~~~~~h~~~V~~l~~-spdg~~l~sgs~Dg~I~iwd~~~ 1077 (1179)
.+||.. ++.+..+..+.. +++++| +|+++.|++++.++ +.-++..+
T Consensus 240 ~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~ 286 (296)
T 3e5z_A 240 HVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNV 286 (296)
T ss_dssp EEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSC
T ss_pred EEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEccc
Confidence 999976 777788877777 999999 58999999988765 44555555
No 199
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.32 E-value=1.7e-10 Score=127.00 Aligned_cols=233 Identities=9% Similarity=-0.007 Sum_probs=156.5
Q ss_pred cEEEEEEe-CCCEEE-EEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEe
Q 001039 925 QVSCVRML-SGERVL-TASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKF 1002 (1179)
Q Consensus 925 ~V~~l~~s-~~~~l~-sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~ 1002 (1179)
...++++. ++..++ +.+.++.|..||..++............+.+++++++|+++++.. ++.|.+||...... ..+
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-TVL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-EEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-eee
Confidence 67788887 455555 336789999999766543322223335678899999999666555 88999999876543 333
Q ss_pred e-cCCCCeEEEEEcC--CEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 001039 1003 L-GHTKWIRSIRMDR--DTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAG 1079 (1179)
Q Consensus 1003 ~-~~~~~I~sl~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~ 1079 (1179)
. .....+..+++++ +.+++...++.|.+|+..+.............+.+++++++|+.+++...++.|.+||.....
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~ 182 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN 182 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCC
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCc
Confidence 2 2335788898864 466666678899999866554433222333467899999999977777778899999987632
Q ss_pred cceEEEeecccCceE--EEEecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCC
Q 001039 1080 GIKCVKNVTIHSSAI--LSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLE 1157 (1179)
Q Consensus 1080 ~~~~~~~~~~h~~~i--~sis~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspd 1157 (1179)
.......+...+ .+++++|.+.++...++.|.+||..+... ......+...+.+++++++
T Consensus 183 ---~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~---------------~~~~~~~~~~p~~i~~~~~ 244 (270)
T 1rwi_B 183 ---QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS---------------TVLPFTGLNTPLAVAVDSD 244 (270)
T ss_dssp ---EEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC---------------EECCCCSCSCEEEEEECTT
T ss_pred ---eEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc---------------eeeccCCCCCceeEEECCC
Confidence 111111221333 45578887777777788999999863311 1111223356899999999
Q ss_pred CCEEEEEeCCCcEEEEECCC
Q 001039 1158 RKRICSGGRNGLLRLWEATI 1177 (1179)
Q Consensus 1158 g~~Lasgs~Dg~I~vWdv~t 1177 (1179)
|+++++...++.|++++...
T Consensus 245 g~l~v~~~~~~~v~~~~~~~ 264 (270)
T 1rwi_B 245 RTVYVADRGNDRVVKLTSLE 264 (270)
T ss_dssp CCEEEEEGGGTEEEEECCCG
T ss_pred CCEEEEECCCCEEEEEcCCC
Confidence 99889999999999998864
No 200
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.31 E-value=1.3e-09 Score=126.62 Aligned_cols=258 Identities=14% Similarity=0.100 Sum_probs=171.7
Q ss_pred CCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcE---
Q 001039 850 DAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQV--- 926 (1179)
Q Consensus 850 d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V--- 926 (1179)
++..++.++.++.|..+|.. +.+..................+..++.++.++.+..+|..+|+.+..........
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~--tG~~~W~~~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~ 179 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTS--DGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR 179 (376)
T ss_dssp ETTEEEEEETTSEEEEEETT--TCCEEEEEECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred eCCEEEEEcCCCEEEEEECC--CCCEEEEEeCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence 46678888899999999976 3333333332221111111235688889999999999999999988876533221
Q ss_pred --EEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCc----EE---EEEEcC--CCCEEEEEeCCCeEEEEeCCC
Q 001039 927 --SCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSA----VL---CMEYDD--STGILAAGGRDAVANIWDIRA 995 (1179)
Q Consensus 927 --~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~----v~---~l~~sp--~~~~l~sgs~dg~I~iwD~~~ 995 (1179)
..... .++.+++++.+|.+..+|..+|+.+......... +. .+...| .+..+++++.++.+..+|.++
T Consensus 180 ~~~~~~~-~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~t 258 (376)
T 3q7m_A 180 GESAPTT-AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRS 258 (376)
T ss_dssp CCCCCEE-ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTT
T ss_pred CCCCcEE-ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCC
Confidence 11122 2567888889999999999999988776432110 00 011111 245677888899999999999
Q ss_pred CceeEEeecCCCCeEEEEEcCCEEEEEeCCCcEEEEEccCCeeeEEeec-CCcCEEEEEEecCCCEEEEEeCCCcEEEEE
Q 001039 996 GRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLAC-HAGPVQCVEYSSSDRGIITGSSDGLLRFWE 1074 (1179)
Q Consensus 996 ~~~~~~~~~~~~~I~sl~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd 1074 (1179)
++.+..... .....+..+++.++.++.++.|..+|..+++....... ....+...... +..++.++.+|.+..+|
T Consensus 259 G~~~w~~~~--~~~~~~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~~g~l~~~d 334 (376)
T 3q7m_A 259 GQIMWKREL--GSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGDSEGYLHWIN 334 (376)
T ss_dssp CCEEEEECC--CCEEEEEEETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEECTTSEEEEEE
T ss_pred CcEEeeccC--CCCCCceEECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEEEEeCCCeEEEEE
Confidence 998766542 34566777888999999999999999999998877652 22223333332 57888999999999999
Q ss_pred cCCCCcceEEEeecccCceEE-EEecCCCEEEEEECCCcEEEEe
Q 001039 1075 NDDAGGIKCVKNVTIHSSAIL-SINAGDHWLGIGAADNSMSLFH 1117 (1179)
Q Consensus 1075 ~~~~~~~~~~~~~~~h~~~i~-sis~dg~~lasgs~Dg~I~iwd 1117 (1179)
..+++ .+.........+. .....+..|++++.+|.|+.|+
T Consensus 335 ~~tG~---~~~~~~~~~~~~~~~~~~~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 335 VEDGR---FVAQQKVDSSGFQTEPVAADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp TTTCC---EEEEEECCTTCBCSCCEEETTEEEEEBTTSCEEEEE
T ss_pred CCCCc---EEEEEecCCCcceeCCEEECCEEEEEeCCCEEEEEe
Confidence 98854 2322222122221 1122466788899999999987
No 201
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.31 E-value=4.8e-10 Score=130.94 Aligned_cols=268 Identities=9% Similarity=-0.008 Sum_probs=189.2
Q ss_pred cCCCEEEEEeCC-----CcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEE----------cCCeEEEEeCCCC
Q 001039 891 SDRGKVVSGSDD-----QSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTAS----------HDGTVKMWDVRTD 954 (1179)
Q Consensus 891 ~d~~~l~sgs~d-----g~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs----------~dg~I~iwd~~~~ 954 (1179)
++++.++++... ++|.++|..+++.+.++.....+ .++++ ++++++++. .++.|.++|..++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 567777766553 69999999999999999866666 78998 677777665 4678999999999
Q ss_pred eEEEEeccC-------CCcEEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCceeEEeecCCCCeEEEEE-cCCEEEEEeC
Q 001039 955 TCVATVGRC-------SSAVLCMEYDDSTGILAAGGR--DAVANIWDIRAGRQMHKFLGHTKWIRSIRM-DRDTVITGSD 1024 (1179)
Q Consensus 955 ~~~~~~~~~-------~~~v~~l~~sp~~~~l~sgs~--dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~-~~~~l~sgs~ 1024 (1179)
+.+.++.-. ......+.++|||++++++.. ++.|.++|+.+++.+.++..... ..+.. ....+++.+.
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~--~~~~p~g~~~~v~~~~ 237 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC--YHIFPASPTVFYMNCR 237 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEET
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc--eeeccCCCcEEEEEcC
Confidence 988877422 123457899999999999874 57899999999999888764322 22333 3457778888
Q ss_pred CCcEEEEEccCCeeeEEe----ecCCcCE-EEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeec-----------
Q 001039 1025 DWTARMWSISRGTCDAVL----ACHAGPV-QCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVT----------- 1088 (1179)
Q Consensus 1025 dg~I~iwd~~~~~~~~~~----~~h~~~V-~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~----------- 1088 (1179)
||++.+.+..+++..... .....++ ..+.++++++.++..+..|.|.+.|..... ...+..+.
T Consensus 238 dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~-~~v~~~~~~~~~~~i~~g~ 316 (426)
T 3c75_H 238 DGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEG-ATFRAPIEALTEAERADDW 316 (426)
T ss_dssp TSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSC-EEECCCEESSCTTTGGGTE
T ss_pred CCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCc-eEEeeeeeecccccccccc
Confidence 999999998666554321 1111221 235678999988888888999999986532 11111111
Q ss_pred -ccCceEEEEecCCCEEEEEEC----------CCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCC
Q 001039 1089 -IHSSAILSINAGDHWLGIGAA----------DNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLE 1157 (1179)
Q Consensus 1089 -~h~~~i~sis~dg~~lasgs~----------Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspd 1157 (1179)
........++++++.+++... ++.|.+.|..+.+ .+.++.. .....+++|+||
T Consensus 317 ~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k---------------vv~~I~v-g~~P~gia~spD 380 (426)
T 3c75_H 317 RPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE---------------RINKIEL-GHEIDSINVSQD 380 (426)
T ss_dssp EECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC---------------EEEEEEE-EEEECEEEECCS
T ss_pred ccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCe---------------EEEEEEC-CCCcCeEEEccC
Confidence 111123578999887777642 3579999998442 2222211 124789999999
Q ss_pred CC-EEEEEe-CCCcEEEEECCCCC
Q 001039 1158 RK-RICSGG-RNGLLRLWEATINI 1179 (1179)
Q Consensus 1158 g~-~Lasgs-~Dg~I~vWdv~tg~ 1179 (1179)
|+ +++++. .++.|.|+|+.|++
T Consensus 381 g~~~lyv~n~~s~~VsVID~~t~k 404 (426)
T 3c75_H 381 AEPLLYALSAGTQTLHIYDAATGE 404 (426)
T ss_dssp SSCEEEEEETTTTEEEEEETTTCC
T ss_pred CCEEEEEEcCCCCeEEEEECCCCC
Confidence 99 888887 59999999999875
No 202
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.30 E-value=2.4e-10 Score=125.68 Aligned_cols=233 Identities=8% Similarity=-0.037 Sum_probs=159.2
Q ss_pred ceEEEEeecccceeccccccCCCCEEE-EEeCCCcEEEEcCCCCCceeEEEeccccccE--EEEecCCCEEEEEeCCCcE
Q 001039 829 AITALHCVTKREVWDLVGDREDAGFFI-SGSTDCLVKIWDPSLRGSELRATLKGHTRTV--RAINSDRGKVVSGSDDQSV 905 (1179)
Q Consensus 829 ~V~~v~~s~~~~~~~~~~~s~d~~~La-sgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v--~~~s~d~~~l~sgs~dg~I 905 (1179)
...++++. ++|++++ +.+.++.|.+||.. +.........+...+ .+++++|+.+++.. ++.|
T Consensus 25 ~p~~i~~~------------~~g~l~v~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i 89 (270)
T 1rwi_B 25 SPSGVAVD------------SAGNVYVTSEGMYGRVVKLATG--STGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRV 89 (270)
T ss_dssp CEEEEEEC------------TTCCEEEEECSSSCEEEEECC-------EECCCCSCCSCCCEEECTTCCEEEEET-TTEE
T ss_pred CccceEEC------------CCCCEEEEccCCCCcEEEecCC--CcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEE
Confidence 55677776 7888777 54778999999964 222211111221222 35678888555555 8899
Q ss_pred EEEECCCCeEEEEee-cCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEe
Q 001039 906 LVWDKQTSQLLEELK-GHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGG 983 (1179)
Q Consensus 906 ~iwd~~t~~~~~~~~-~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs 983 (1179)
.+||..++... .+. .....+.++++. ++..+++...++.|.+|+..+.............+.+++++++|+++++..
T Consensus 90 ~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~ 168 (270)
T 1rwi_B 90 VTLAAGSNNQT-VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDT 168 (270)
T ss_dssp EEECTTCSCCE-ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEG
T ss_pred EEEeCCCceEe-eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEEC
Confidence 99998765543 332 233578899998 566566656788999998765544332223334678899999999777776
Q ss_pred CCCeEEEEeCCCCceeEEeecCCCCeEEEEEcCC--EEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEE
Q 001039 984 RDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGI 1061 (1179)
Q Consensus 984 ~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~--~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l 1061 (1179)
.++.|.+||..+.........+...+.+++++++ .+++...++.|.+||............+...+.+++++++|+.+
T Consensus 169 ~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~ 248 (270)
T 1rwi_B 169 DNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVY 248 (270)
T ss_dssp GGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEE
T ss_pred CCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEE
Confidence 7889999998876654433334467888999654 55555668899999987654433222334678999999999988
Q ss_pred EEEeCCCcEEEEEcCC
Q 001039 1062 ITGSSDGLLRFWENDD 1077 (1179)
Q Consensus 1062 ~sgs~Dg~I~iwd~~~ 1077 (1179)
++...++.|++++...
T Consensus 249 v~~~~~~~v~~~~~~~ 264 (270)
T 1rwi_B 249 VADRGNDRVVKLTSLE 264 (270)
T ss_dssp EEEGGGTEEEEECCCG
T ss_pred EEECCCCEEEEEcCCC
Confidence 8888999999999876
No 203
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.29 E-value=2.2e-10 Score=145.84 Aligned_cols=237 Identities=14% Similarity=0.030 Sum_probs=157.9
Q ss_pred ccCceEEEEeecccceeccccccCCCCEEEEEeCC-----CcEEEEcCCCCCceeEEE-eccccccEEEEecCCCEEEEE
Q 001039 826 HAGAITALHCVTKREVWDLVGDREDAGFFISGSTD-----CLVKIWDPSLRGSELRAT-LKGHTRTVRAINSDRGKVVSG 899 (1179)
Q Consensus 826 H~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~D-----g~I~lWd~~~~~~~~~~~-l~~h~~~v~~~s~d~~~l~sg 899 (1179)
|...+.+++|| |||++||.++.+ .+|++||+.. .+.... ..+....-.+|++| +.|+.+
T Consensus 161 ~~~~~~~~~~S------------PDG~~la~~~~~~G~e~~~i~v~dl~t--g~~~~~~~~~~~~~~~~wspD-~~l~~~ 225 (741)
T 1yr2_A 161 GATALDAWAAS------------DDGRLLAYSVQDGGSDWRTVKFVGVAD--GKPLADELKWVKFSGLAWLGN-DALLYS 225 (741)
T ss_dssp --EEEEEEEEC------------TTSSEEEEEEEETTCSEEEEEEEETTT--CCEEEEEEEEEESCCCEESTT-SEEEEE
T ss_pred CCEEEEeEEEC------------CCCCEEEEEEcCCCCceEEEEEEECCC--CCCCCccCCCceeccEEEECC-CEEEEE
Confidence 44467788887 899999887654 3599999873 333222 21111122368999 999988
Q ss_pred eCCCc--------------EEEEECCCCe----EEEEeecCCCcEEEEEEe-CCCEEEEEEcCC-----eEEEEeCCCC-
Q 001039 900 SDDQS--------------VLVWDKQTSQ----LLEELKGHDAQVSCVRML-SGERVLTASHDG-----TVKMWDVRTD- 954 (1179)
Q Consensus 900 s~dg~--------------I~iwd~~t~~----~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg-----~I~iwd~~~~- 954 (1179)
+.++. |++|++.++. .+.....+...+..+.|+ +|++++..+.++ .|.+||+.++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~ 305 (741)
T 1yr2_A 226 RFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGK 305 (741)
T ss_dssp ECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTE
T ss_pred EecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCC
Confidence 87654 8999998765 222222333458889999 677888777544 8999999887
Q ss_pred -eEEEEeccCCCcEEEEEEcCCCCEEEEEeC----CCeEEEEeCCCC--ceeEEeecCCCCeEEEEEcCC-EEEEEeCCC
Q 001039 955 -TCVATVGRCSSAVLCMEYDDSTGILAAGGR----DAVANIWDIRAG--RQMHKFLGHTKWIRSIRMDRD-TVITGSDDW 1026 (1179)
Q Consensus 955 -~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~----dg~I~iwD~~~~--~~~~~~~~~~~~I~sl~~~~~-~l~sgs~dg 1026 (1179)
++...+..+...+... ++++|+.|+..+. ++.|.+||+.++ +....+..+...+.++++.++ ++++...|+
T Consensus 306 ~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg 384 (741)
T 1yr2_A 306 IGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAGNRLFASYIHDA 384 (741)
T ss_dssp ECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEBTEEEEEEEETT
T ss_pred CcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEECCEEEEEEEECC
Confidence 4134444444444444 3488888888775 346999999875 333334445556667777655 677788898
Q ss_pred cEEEEEcc-CCeeeEEeec-CCcCEEEEEEecCCCEEEEEe----CCCcEEEEEcCCC
Q 001039 1027 TARMWSIS-RGTCDAVLAC-HAGPVQCVEYSSSDRGIITGS----SDGLLRFWENDDA 1078 (1179)
Q Consensus 1027 ~I~iwd~~-~~~~~~~~~~-h~~~V~~l~~spdg~~l~sgs----~Dg~I~iwd~~~~ 1078 (1179)
..++|.++ +++....+.. +.+.+..+.++|+++.++... ..++|++||+.++
T Consensus 385 ~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 442 (741)
T 1yr2_A 385 KSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATA 442 (741)
T ss_dssp EEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTT
T ss_pred EEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 87777654 4555666654 367788999999988666332 3578999999874
No 204
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.27 E-value=8.7e-09 Score=119.42 Aligned_cols=263 Identities=8% Similarity=-0.002 Sum_probs=173.7
Q ss_pred EEccCCCceeeccC-------ceEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceeccccc
Q 001039 775 MFSREASSRSHSFS-------RVRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGD 847 (1179)
Q Consensus 775 ~fSpdg~~las~~~-------dI~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~ 847 (1179)
...||++++..+.. .|.++|..+++ .+..+.....+ .++++
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~-------------------~~~~i~~g~~p--~i~~s----------- 74 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGS-------------------ILGHVNGGFLP--NPVAA----------- 74 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCe-------------------EEEEecCCCCC--CeEEC-----------
Confidence 44577766555543 36889988766 34455443444 77787
Q ss_pred cCCCCEEEEEe----------CCCcEEEEcCCCCCceeEEEecc---------ccccEEEEecCCCEEEEEeC--CCcEE
Q 001039 848 REDAGFFISGS----------TDCLVKIWDPSLRGSELRATLKG---------HTRTVRAINSDRGKVVSGSD--DQSVL 906 (1179)
Q Consensus 848 s~d~~~Lasgs----------~Dg~I~lWd~~~~~~~~~~~l~~---------h~~~v~~~s~d~~~l~sgs~--dg~I~ 906 (1179)
|||++++.+. .++.|.+||.. ..+....+.- ....-..++|||++|+++.. +++|.
T Consensus 75 -pDg~~lyv~n~~~~~~~rg~~~~~v~viD~~--t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~ 151 (373)
T 2mad_H 75 -HSGSEFALASTSFSRIAKGKRTDYVEVFDPV--TFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVG 151 (373)
T ss_pred -CCCCEEEEEeccccccccCCCCCeEEEEECC--CCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEE
Confidence 8999998886 36789999976 3333333321 11223468999999999874 57899
Q ss_pred EEECCCCeEEEE-eecCCCcEEEEEE-e-CCCEEEEEEcCCeEEEEeCCCCeEEEEec-----cCCCc-EEEEEEcCCCC
Q 001039 907 VWDKQTSQLLEE-LKGHDAQVSCVRM-L-SGERVLTASHDGTVKMWDVRTDTCVATVG-----RCSSA-VLCMEYDDSTG 977 (1179)
Q Consensus 907 iwd~~t~~~~~~-~~~h~~~V~~l~~-s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~-----~~~~~-v~~l~~sp~~~ 977 (1179)
++| .+++.+.. +..... +.+ . ....+++.+.||.+.++|. +++...... ....+ .....+.+++.
T Consensus 152 viD-~t~~~~~~~i~~~~~----~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 225 (373)
T 2mad_H 152 LVV-QGGSSDDQLLSSPTC----YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSG 225 (373)
T ss_pred EEE-CCCCEEeEEcCCCce----EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCC
Confidence 999 99998887 653322 222 2 3456777888999999999 887664322 11112 23345666666
Q ss_pred EEEEEeCCCeEEEEeCCCCc--eeEEeecC----------CCCeEEEEE--cCCEEEEEeC----------CCcEEEEEc
Q 001039 978 ILAAGGRDAVANIWDIRAGR--QMHKFLGH----------TKWIRSIRM--DRDTVITGSD----------DWTARMWSI 1033 (1179)
Q Consensus 978 ~l~sgs~dg~I~iwD~~~~~--~~~~~~~~----------~~~I~sl~~--~~~~l~sgs~----------dg~I~iwd~ 1033 (1179)
.++..+..+.+.+.|+.++. .+..+... ......+.+ +++.++++.. ++.|.++|.
T Consensus 226 ~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~ 305 (373)
T 2mad_H 226 RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTG 305 (373)
T ss_pred EEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEEC
Confidence 55555578899999997653 22222111 112223445 4455555432 357999999
Q ss_pred cCCeeeEEeecCCcCEEEEEEecCCC-EEEEEe-CCCcEEEEEcCCCC
Q 001039 1034 SRGTCDAVLACHAGPVQCVEYSSSDR-GIITGS-SDGLLRFWENDDAG 1079 (1179)
Q Consensus 1034 ~~~~~~~~~~~h~~~V~~l~~spdg~-~l~sgs-~Dg~I~iwd~~~~~ 1079 (1179)
.+++.+..+.. .....+++|+|||+ .++++. .++.|.+||..+.+
T Consensus 306 ~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 306 LVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred CCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCC
Confidence 99999888863 44689999999999 777776 58999999999843
No 205
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.23 E-value=4.1e-10 Score=143.42 Aligned_cols=270 Identities=12% Similarity=0.075 Sum_probs=170.9
Q ss_pred CCCCEEEEEeCCCc---EEEEcCCCC---CceeEEEe------ccccccEE--EEecCCCEEEEEeCC-----CcEEEEE
Q 001039 849 EDAGFFISGSTDCL---VKIWDPSLR---GSELRATL------KGHTRTVR--AINSDRGKVVSGSDD-----QSVLVWD 909 (1179)
Q Consensus 849 ~d~~~Lasgs~Dg~---I~lWd~~~~---~~~~~~~l------~~h~~~v~--~~s~d~~~l~sgs~d-----g~I~iwd 909 (1179)
|||++++....++. -.+|..... +......+ .+|...+. ++||||++|+.++.+ .+|++||
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d 195 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG 195 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence 78888876665443 555654322 22222211 22322333 579999999887654 4699999
Q ss_pred CCCCeEEEEeecCCCcEEEEEEeCCCEEEEEEcCCe--------------EEEEeCCCCeE--EEEec--cCCCcEEEEE
Q 001039 910 KQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGT--------------VKMWDVRTDTC--VATVG--RCSSAVLCME 971 (1179)
Q Consensus 910 ~~t~~~~~~~~~h~~~V~~l~~s~~~~l~sgs~dg~--------------I~iwd~~~~~~--~~~~~--~~~~~v~~l~ 971 (1179)
+.+++.+... .+...+..++|++++.|+.++.++. |.+|++.++.. ...+. .+...+..+.
T Consensus 196 l~tg~~~~~~-~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~ 274 (741)
T 1yr2_A 196 VADGKPLADE-LKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGAS 274 (741)
T ss_dssp TTTCCEEEEE-EEEEESCCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEE
T ss_pred CCCCCCCCcc-CCCceeccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEE
Confidence 9999876531 1222235788984488888876654 89999987752 22232 2334588999
Q ss_pred EcCCCCEEEEEeCCC-----eEEEEeCCCC--ceeEEeecCCCCeEE-EEEcCCEEEEEeCC----CcEEEEEccCC--e
Q 001039 972 YDDSTGILAAGGRDA-----VANIWDIRAG--RQMHKFLGHTKWIRS-IRMDRDTVITGSDD----WTARMWSISRG--T 1037 (1179)
Q Consensus 972 ~sp~~~~l~sgs~dg-----~I~iwD~~~~--~~~~~~~~~~~~I~s-l~~~~~~l~sgs~d----g~I~iwd~~~~--~ 1037 (1179)
|+|||++|+..+.++ .|++||+.++ +....+..+...+.. +..+++.++..+.+ +.|.+||+.++ .
T Consensus 275 ~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~ 354 (741)
T 1yr2_A 275 VSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPR 354 (741)
T ss_dssp ECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCE
T ss_pred ECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccc
Confidence 999999988877544 8999999877 314555555444333 34477777777653 45999999874 3
Q ss_pred eeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecc-cCceEEEE--ecCCCEEEEEE----CC
Q 001039 1038 CDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTI-HSSAILSI--NAGDHWLGIGA----AD 1110 (1179)
Q Consensus 1038 ~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~-h~~~i~si--s~dg~~lasgs----~D 1110 (1179)
....+..+...+..++++ ++..+++...|+..++|.++..+ .....+.. +...+..+ +++++.++... ..
T Consensus 355 ~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g--~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P 431 (741)
T 1yr2_A 355 FDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDG--KPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQP 431 (741)
T ss_dssp EEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTS--CEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEE
T ss_pred cEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC--CceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCC
Confidence 444445555567778887 56778888889988887665322 23344433 24455544 67887665332 34
Q ss_pred CcEEEEeCCCCC
Q 001039 1111 NSMSLFHRPQER 1122 (1179)
Q Consensus 1111 g~I~iwd~~~~~ 1122 (1179)
++|++||+.+++
T Consensus 432 ~~i~~~d~~tg~ 443 (741)
T 1yr2_A 432 ATVLALDPATAK 443 (741)
T ss_dssp EEEEEEETTTTE
T ss_pred CEEEEEECCCCc
Confidence 789999987543
No 206
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.23 E-value=2.5e-08 Score=110.87 Aligned_cols=270 Identities=5% Similarity=-0.053 Sum_probs=178.7
Q ss_pred CCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceecc
Q 001039 767 IGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDL 844 (1179)
Q Consensus 767 h~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~ 844 (1179)
.......++++++|+..++...+ |.+||.. +.. ....+..+...+.++++.
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~------------------~~~~~~~~~~~~~~i~~~-------- 70 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRI------------------KEFEVPTPDAKVMCLIVS-------- 70 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE------------------EEEECSSTTCCEEEEEEC--------
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cce------------------EEEECCCCCCcceeEEEC--------
Confidence 34567788999999977766543 9999876 331 011122334567888876
Q ss_pred ccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEE--EecCCCEEEEEeCCCcEEEEECCCCeEEE-Eeec
Q 001039 845 VGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLLE-ELKG 921 (1179)
Q Consensus 845 ~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~-~~~~ 921 (1179)
+++++.++...++.|..||.. +.............+.+ +.++++..++...++.|..||.. ++... .+..
T Consensus 71 ----~~g~l~v~~~~~~~v~~~d~~--g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~ 143 (300)
T 2qc5_A 71 ----SLGDIWFTENGANKIGKLSKK--GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPN 143 (300)
T ss_dssp ----TTSCEEEEETTTTEEEEECTT--SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSS
T ss_pred ----CCCCEEEEecCCCeEEEECCC--CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCC
Confidence 788888877778899999965 22222223223344444 46778877777778899999987 65543 2333
Q ss_pred CCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEE-eccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Q 001039 922 HDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVAT-VGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQM 999 (1179)
Q Consensus 922 h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~-~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~ 999 (1179)
....+.++++. +++.+++...++.|..||. +++.... .......+..++++++|++.++...++.|..||. +++..
T Consensus 144 ~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~ 221 (300)
T 2qc5_A 144 KGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEIS 221 (300)
T ss_dssp TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE
T ss_pred CCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEE
Confidence 45678889887 4665555555789999998 5554432 2234457899999999987777666778999998 55443
Q ss_pred EE-eecCCCCeEEEEEcC--CEEEEEeCCCcEEEEEccCCeeeE-EeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEc
Q 001039 1000 HK-FLGHTKWIRSIRMDR--DTVITGSDDWTARMWSISRGTCDA-VLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWEN 1075 (1179)
Q Consensus 1000 ~~-~~~~~~~I~sl~~~~--~~l~sgs~dg~I~iwd~~~~~~~~-~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~ 1075 (1179)
.. .......+.++++++ +..++...++.|..||. +++... .+......+.+++++++|+..++.. . .|..+|.
T Consensus 222 ~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 222 EYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred EEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 32 333456788898864 35555556789999998 454332 2333456688999999998666554 4 6666664
No 207
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.21 E-value=8.8e-09 Score=118.12 Aligned_cols=267 Identities=12% Similarity=0.052 Sum_probs=178.9
Q ss_pred EEEEccCCCceeeccC------c-eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceeccc
Q 001039 773 QSMFSREASSRSHSFS------R-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLV 845 (1179)
Q Consensus 773 ~~~fSpdg~~las~~~------d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~ 845 (1179)
.....|||+.+..... + |.+.|..+++ .+..+..-..+ .++++
T Consensus 37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~-------------------v~~~I~vG~~P--~va~s--------- 86 (386)
T 3sjl_D 37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGR-------------------VIGMIDGGFLP--NPVVA--------- 86 (386)
T ss_dssp CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTE-------------------EEEEEEECSSC--EEEEC---------
T ss_pred eeccCCCCCEEEEEcCcccCCCCEEEEEECCCCe-------------------EEEEEECCCCC--cEEEC---------
Confidence 3466788887665532 3 8899988777 55666554555 38887
Q ss_pred cccCCCCEEEEEe----------CCCcEEEEcCCCCCceeEEEecc---------ccccEEEEecCCCEEEEEeC--CCc
Q 001039 846 GDREDAGFFISGS----------TDCLVKIWDPSLRGSELRATLKG---------HTRTVRAINSDRGKVVSGSD--DQS 904 (1179)
Q Consensus 846 ~~s~d~~~Lasgs----------~Dg~I~lWd~~~~~~~~~~~l~~---------h~~~v~~~s~d~~~l~sgs~--dg~ 904 (1179)
|||++++.++ .++.|.+||.. +.+....+.- ....-..+++||++++++.. ++.
T Consensus 87 ---pDG~~lyVan~~~~r~~~G~~~~~VsviD~~--t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~ 161 (386)
T 3sjl_D 87 ---DDGSFIAHASTVFSRIARGERTDYVEVFDPV--TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA 161 (386)
T ss_dssp ---TTSSCEEEEEEEEEETTEEEEEEEEEEECTT--TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred ---CCCCEEEEEcccccccccCCCCCEEEEEECC--CCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCe
Confidence 8999887765 36789999976 4444444431 12333578999999998874 689
Q ss_pred EEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCC-CeEEEEeccC----CCcEE-EEEEc-CCC
Q 001039 905 VLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRT-DTCVATVGRC----SSAVL-CMEYD-DST 976 (1179)
Q Consensus 905 I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~-~~~~~~~~~~----~~~v~-~l~~s-p~~ 976 (1179)
|.++|+.+++.+.++.... .. ..+. ....+++.+.||++.+.++.+ ++........ ...+. ...|. ++|
T Consensus 162 VsVID~~t~~vv~tI~v~g--~~-~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG 238 (386)
T 3sjl_D 162 VGVVDLEGKAFKRMLDVPD--CY-HIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAG 238 (386)
T ss_dssp EEEEETTTTEEEEEEECCS--EE-EEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTT
T ss_pred EEEEECCCCcEEEEEECCC--cc-eeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCC
Confidence 9999999999999986433 12 2234 456788899999999999976 5653322111 12221 24554 577
Q ss_pred CEEEEEeCCCeEEEEeCCCCc--eeEEee------------cCCCCeEEEEEcCCEEEEEeC----------CCcEEEEE
Q 001039 977 GILAAGGRDAVANIWDIRAGR--QMHKFL------------GHTKWIRSIRMDRDTVITGSD----------DWTARMWS 1032 (1179)
Q Consensus 977 ~~l~sgs~dg~I~iwD~~~~~--~~~~~~------------~~~~~I~sl~~~~~~l~sgs~----------dg~I~iwd 1032 (1179)
++++ .+.+|.+.+.|..++. ....+. ........+.-+++.++.... .++|.+.|
T Consensus 239 ~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD 317 (386)
T 3sjl_D 239 RLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLD 317 (386)
T ss_dssp EEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEE
T ss_pred cEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEE
Confidence 5554 5668999999997654 233222 111122333334455555432 25799999
Q ss_pred ccCCeeeEEeecCCcCEEEEEEecCCC-EEEEE-eCCCcEEEEEcCCCC
Q 001039 1033 ISRGTCDAVLACHAGPVQCVEYSSSDR-GIITG-SSDGLLRFWENDDAG 1079 (1179)
Q Consensus 1033 ~~~~~~~~~~~~h~~~V~~l~~spdg~-~l~sg-s~Dg~I~iwd~~~~~ 1079 (1179)
+.+++.+..+.. ...++++++++|++ +|+++ ..++.|.++|..+++
T Consensus 318 ~~t~kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 318 AKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp TTTCCEEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred CCCCeEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCc
Confidence 999999988873 24688999999997 66665 458999999999854
No 208
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.21 E-value=3e-09 Score=133.29 Aligned_cols=266 Identities=13% Similarity=0.135 Sum_probs=179.2
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCceeEEEeccccc----------cE-EEEecCCCEEEEEeCCCcEEEEECCCCeEEEEe
Q 001039 851 AGFFISGSTDCLVKIWDPSLRGSELRATLKGHTR----------TV-RAINSDRGKVVSGSDDQSVLVWDKQTSQLLEEL 919 (1179)
Q Consensus 851 ~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~----------~v-~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~ 919 (1179)
+..++.++.++.|..+|.. +.+.+........ .+ ..+..++..+++++.|+.+..+|..+|+.+..+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~--tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTR--TGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETT--TTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECC--CCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 4556666777888888865 3444444432211 01 122336788999999999999999999999988
Q ss_pred ecC-C----CcEEEEEEeCCCEEEEEEc------CCeEEEEeCCCCeEEEEeccCCCc----------------------
Q 001039 920 KGH-D----AQVSCVRMLSGERVLTASH------DGTVKMWDVRTDTCVATVGRCSSA---------------------- 966 (1179)
Q Consensus 920 ~~h-~----~~V~~l~~s~~~~l~sgs~------dg~I~iwd~~~~~~~~~~~~~~~~---------------------- 966 (1179)
..+ . ..+.+.-...++.+++++. +|.|..+|..+|+.+..+......
T Consensus 155 ~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~ 234 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGK 234 (677)
T ss_dssp ETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGC
T ss_pred cCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCc
Confidence 765 2 1222111113556666654 699999999999998877432111
Q ss_pred ----------EEEEEEcCCCCEEEEEeCCC-------------------eEEEEeCCCCceeEEeec--CC--------C
Q 001039 967 ----------VLCMEYDDSTGILAAGGRDA-------------------VANIWDIRAGRQMHKFLG--HT--------K 1007 (1179)
Q Consensus 967 ----------v~~l~~sp~~~~l~sgs~dg-------------------~I~iwD~~~~~~~~~~~~--~~--------~ 1007 (1179)
...+++++++..++.++.++ .|..+|.++|+.+..++. |. .
T Consensus 235 ~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~ 314 (677)
T 1kb0_A 235 WWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQP 314 (677)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCC
Confidence 13578899999998887664 599999999999887654 21 1
Q ss_pred C-eEEEEEcC---CEEEEEeCCCcEEEEEccCCeeeEEeecCCc-----------CE-----------------------
Q 001039 1008 W-IRSIRMDR---DTVITGSDDWTARMWSISRGTCDAVLACHAG-----------PV----------------------- 1049 (1179)
Q Consensus 1008 ~-I~sl~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~-----------~V----------------------- 1049 (1179)
+ +.....++ +.++.++.+|.++++|..+|+.+........ ++
T Consensus 315 p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~ 394 (677)
T 1kb0_A 315 MILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHN 394 (677)
T ss_dssp CEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSC
T ss_pred cEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccC
Confidence 1 22233356 5799999999999999999998876652210 01
Q ss_pred -EEEEEecCCCEEEEEeCC-------------------------------------------CcEEEEEcCCCCcceEEE
Q 001039 1050 -QCVEYSSSDRGIITGSSD-------------------------------------------GLLRFWENDDAGGIKCVK 1085 (1179)
Q Consensus 1050 -~~l~~spdg~~l~sgs~D-------------------------------------------g~I~iwd~~~~~~~~~~~ 1085 (1179)
..++++|++..+++...+ |.|..||+.+++ .+.
T Consensus 395 w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~---~~W 471 (677)
T 1kb0_A 395 WHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQK---AAW 471 (677)
T ss_dssp SSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTE---EEE
T ss_pred CCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCc---EEe
Confidence 156889998888876432 779999998854 333
Q ss_pred eecccC-ceEEEEecCCCEEEEEECCCcEEEEeCCCC
Q 001039 1086 NVTIHS-SAILSINAGDHWLGIGAADNSMSLFHRPQE 1121 (1179)
Q Consensus 1086 ~~~~h~-~~i~sis~dg~~lasgs~Dg~I~iwd~~~~ 1121 (1179)
...... ..-..++.++.++++|+.||.+++||..++
T Consensus 472 ~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG 508 (677)
T 1kb0_A 472 SVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATG 508 (677)
T ss_dssp EEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred ecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCC
Confidence 322211 111235677888999999999999999843
No 209
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.21 E-value=4.8e-08 Score=108.63 Aligned_cols=270 Identities=8% Similarity=-0.010 Sum_probs=176.9
Q ss_pred ccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEE--EecCCCEEEEEeCCC
Q 001039 826 HAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQ 903 (1179)
Q Consensus 826 H~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~--~s~d~~~l~sgs~dg 903 (1179)
....+.++++. ++|++.++...++.|.+||.. ... ....+..+...+.+ +.+++...++...++
T Consensus 18 ~~~~p~~i~~d------------~~g~l~v~~~~~~~v~~~~~~-~~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~ 83 (300)
T 2qc5_A 18 PDSGPYGITSS------------EDGKVWFTQHKANKISSLDQS-GRI-KEFEVPTPDAKVMCLIVSSLGDIWFTENGAN 83 (300)
T ss_dssp TTCCEEEEEEC------------TTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTT
T ss_pred CCCCcceeeEC------------CCCCEEEEcCCCCeEEEECCC-Cce-EEEECCCCCCcceeEEECCCCCEEEEecCCC
Confidence 34567788876 788888877778999999965 222 22223333344554 467787777766688
Q ss_pred cEEEEECCCCeEEE-EeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEE-eccCCCcEEEEEEcCCCCEEE
Q 001039 904 SVLVWDKQTSQLLE-ELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVAT-VGRCSSAVLCMEYDDSTGILA 980 (1179)
Q Consensus 904 ~I~iwd~~t~~~~~-~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~-~~~~~~~v~~l~~sp~~~~l~ 980 (1179)
.|..||.. ++... ........+.++++. ++..+++...++.|..||.. ++.... +......+.++++++++++.+
T Consensus 84 ~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v 161 (300)
T 2qc5_A 84 KIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWF 161 (300)
T ss_dssp EEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEE
T ss_pred eEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEE
Confidence 99999988 65532 222244678889888 45555555557899999987 655432 333456789999999999766
Q ss_pred EEeCCCeEEEEeCCCCceeEE-eecCCCCeEEEEEcC--CEEEEEeCCCcEEEEEccCCeeeEE-eecCCcCEEEEEEec
Q 001039 981 AGGRDAVANIWDIRAGRQMHK-FLGHTKWIRSIRMDR--DTVITGSDDWTARMWSISRGTCDAV-LACHAGPVQCVEYSS 1056 (1179)
Q Consensus 981 sgs~dg~I~iwD~~~~~~~~~-~~~~~~~I~sl~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~-~~~h~~~V~~l~~sp 1056 (1179)
+...++.|..+|. +++.... ...+...+..+++++ +..++....+.|.+||. +++.... ...+...+.++++++
T Consensus 162 ~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~ 239 (300)
T 2qc5_A 162 TENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGK 239 (300)
T ss_dssp EETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECS
T ss_pred EecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECC
Confidence 6666789999998 5554432 223445688888864 35555556678999998 5544332 333456789999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceE--EEEecCCCEEEEEECCCcEEEEeC
Q 001039 1057 SDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAI--LSINAGDHWLGIGAADNSMSLFHR 1118 (1179)
Q Consensus 1057 dg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i--~sis~dg~~lasgs~Dg~I~iwd~ 1118 (1179)
+|+..++...++.|..||... . .... ........+ ..++++|++.++.. + .|..+|.
T Consensus 240 ~g~l~v~~~~~~~i~~~~~~g-~-~~~~-~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 240 NSEIWFTEWGANQIGRITNDN-T-IQEY-QLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp TTCEEEEETTTTEEEEECTTS-C-EEEE-ECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred CCCEEEeccCCCeEEEECCCC-c-EEEE-ECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 999777666678999999832 2 2222 122122223 34467777655544 4 6766664
No 210
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.17 E-value=4.4e-09 Score=132.00 Aligned_cols=264 Identities=14% Similarity=0.148 Sum_probs=176.4
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCceeEEEeccccc----------cE-EEEecCCCEEEEEeCCCcEEEEECCCCeEEEEe
Q 001039 851 AGFFISGSTDCLVKIWDPSLRGSELRATLKGHTR----------TV-RAINSDRGKVVSGSDDQSVLVWDKQTSQLLEEL 919 (1179)
Q Consensus 851 ~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~----------~v-~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~ 919 (1179)
+..++.++.++.|..+|.. +.+.+.....+.. .+ .....++..+++++.|+.|..+|..+|+.+..+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~--tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDAR--DGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETT--TCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECC--CCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 5566677778889999975 3344444432211 01 112335778999999999999999999999887
Q ss_pred ecC-C-C---cEEE-EEEeCCCEEEEEE------cCCeEEEEeCCCCeEEEEeccCC-----------------------
Q 001039 920 KGH-D-A---QVSC-VRMLSGERVLTAS------HDGTVKMWDVRTDTCVATVGRCS----------------------- 964 (1179)
Q Consensus 920 ~~h-~-~---~V~~-l~~s~~~~l~sgs------~dg~I~iwd~~~~~~~~~~~~~~----------------------- 964 (1179)
... . . .+.+ .... ++.+++++ .+|.|..||.++|+.+..+....
T Consensus 148 ~~~~~~~~~~~~~~sP~v~-~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 226 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVV-NGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA 226 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred cCcCCCCCCccccCCcEEE-CCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence 653 1 1 1111 1112 45555554 36899999999999987764210
Q ss_pred --------CcEEEEEEcCCCCEEEEEeCCCe-------------------EEEEeCCCCceeEEeec--CC-------CC
Q 001039 965 --------SAVLCMEYDDSTGILAAGGRDAV-------------------ANIWDIRAGRQMHKFLG--HT-------KW 1008 (1179)
Q Consensus 965 --------~~v~~l~~sp~~~~l~sgs~dg~-------------------I~iwD~~~~~~~~~~~~--~~-------~~ 1008 (1179)
.....+++++++..++.++.++. |..+|.++|+.+..++. |. ..
T Consensus 227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~ 306 (689)
T 1yiq_A 227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQH 306 (689)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCC
Confidence 01125788998899999887764 99999999999887764 22 11
Q ss_pred e--EEEEEcCC---EEEEEeCCCcEEEEEccCCeeeEEeecCC-cC----------------------------------
Q 001039 1009 I--RSIRMDRD---TVITGSDDWTARMWSISRGTCDAVLACHA-GP---------------------------------- 1048 (1179)
Q Consensus 1009 I--~sl~~~~~---~l~sgs~dg~I~iwd~~~~~~~~~~~~h~-~~---------------------------------- 1048 (1179)
. ..+.+++. .++.++.+|.++++|.++|+.+....... .+
T Consensus 307 ~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~ 386 (689)
T 1yiq_A 307 MILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFW 386 (689)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTT
T ss_pred cEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcc
Confidence 1 12334554 78899999999999999999875432111 00
Q ss_pred ----EEEEEEecCCCEEEEEeC---------------------------------------------CCcEEEEEcCCCC
Q 001039 1049 ----VQCVEYSSSDRGIITGSS---------------------------------------------DGLLRFWENDDAG 1079 (1179)
Q Consensus 1049 ----V~~l~~spdg~~l~sgs~---------------------------------------------Dg~I~iwd~~~~~ 1079 (1179)
-..++++|+...+++... +|.|+.||+.+++
T Consensus 387 Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~ 466 (689)
T 1yiq_A 387 GAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQ 466 (689)
T ss_dssp CSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTE
T ss_pred cccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCC
Confidence 112788998888877632 3779999999843
Q ss_pred cceEEEeecccCceE-EEEecCCCEEEEEECCCcEEEEeCCC
Q 001039 1080 GIKCVKNVTIHSSAI-LSINAGDHWLGIGAADNSMSLFHRPQ 1120 (1179)
Q Consensus 1080 ~~~~~~~~~~h~~~i-~sis~dg~~lasgs~Dg~I~iwd~~~ 1120 (1179)
.+.....+.... -.++..+.++++|+.||.++.||..+
T Consensus 467 ---~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~t 505 (689)
T 1yiq_A 467 ---AAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADT 505 (689)
T ss_dssp ---EEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred ---eEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCC
Confidence 333333222111 24566788999999999999999983
No 211
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.12 E-value=2.2e-08 Score=112.53 Aligned_cols=239 Identities=10% Similarity=0.087 Sum_probs=158.1
Q ss_pred EEecccCceEEEEeecccceeccccccCCCCEEEE-------EeCCCcEEEEcCCCCCceeEEEec----cccccEEE--
Q 001039 822 IIRGHAGAITALHCVTKREVWDLVGDREDAGFFIS-------GSTDCLVKIWDPSLRGSELRATLK----GHTRTVRA-- 888 (1179)
Q Consensus 822 ~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Las-------gs~Dg~I~lWd~~~~~~~~~~~l~----~h~~~v~~-- 888 (1179)
.+.+.-....+++|. ++++++++ +..++.|.+||... ........ ++...+.+
T Consensus 12 ~~~~~~~~~~~~~~~------------~~g~l~~~~~~~~~~~~~~~~i~~~d~~~--g~~~~~~~~~~~~~~~~~~~i~ 77 (314)
T 1pjx_A 12 KVTEDIPGAEGPVFD------------KNGDFYIVAPEVEVNGKPAGEILRIDLKT--GKKTVICKPEVNGYGGIPAGCQ 77 (314)
T ss_dssp EEECCCTTCEEEEEC------------TTSCEEEEETTCEETTEECCEEEEECTTT--CCEEEEECCEETTEECCEEEEE
T ss_pred hhhccCCCccCceEC------------CCCCEEEEEeccccCCCCCCEEEEEeCCC--CcEEEEEecccCCCCCCCceEE
Confidence 334444456788886 78888887 57789999999652 22221111 23344554
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCeEEEE-eec----CCCcEEEEEEe-CCCEEEEEEcC---------------CeEE
Q 001039 889 INSDRGKVVSGSDDQSVLVWDKQTSQLLEE-LKG----HDAQVSCVRML-SGERVLTASHD---------------GTVK 947 (1179)
Q Consensus 889 ~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~-~~~----h~~~V~~l~~s-~~~~l~sgs~d---------------g~I~ 947 (1179)
+++++..++.++.++.|.+||.+ ++.... ... ....+.++++. ++..+++...+ +.|.
T Consensus 78 ~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~ 156 (314)
T 1pjx_A 78 CDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIY 156 (314)
T ss_dssp ECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEE
T ss_pred EecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEE
Confidence 46673455555555579999998 776433 221 12357889888 45555555444 5788
Q ss_pred EEeCCCCeEEEEeccCCCcEEEEEEc----CCCCEEEEE-eCCCeEEEEeCC-CCce-----eEEeecCC-CCeEEEEEc
Q 001039 948 MWDVRTDTCVATVGRCSSAVLCMEYD----DSTGILAAG-GRDAVANIWDIR-AGRQ-----MHKFLGHT-KWIRSIRMD 1015 (1179)
Q Consensus 948 iwd~~~~~~~~~~~~~~~~v~~l~~s----p~~~~l~sg-s~dg~I~iwD~~-~~~~-----~~~~~~~~-~~I~sl~~~ 1015 (1179)
.||.. ++..... ........++++ ++++.++++ ..++.|.+||.. +++. ...+.++. ..+..++++
T Consensus 157 ~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d 234 (314)
T 1pjx_A 157 CFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD 234 (314)
T ss_dssp EECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB
T ss_pred EECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEEC
Confidence 88866 5543332 233456889999 999766555 467899999986 4432 22233333 567788885
Q ss_pred --CCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEE-eCCCcEEEEEcCC
Q 001039 1016 --RDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITG-SSDGLLRFWENDD 1077 (1179)
Q Consensus 1016 --~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sg-s~Dg~I~iwd~~~ 1077 (1179)
++.+++...++.|.+||.++++....+..+...+.+++++++|+.|+.+ ..++.|..|+...
T Consensus 235 ~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 235 EDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 4466666678999999998787777777777889999999999955544 4567899999875
No 212
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.12 E-value=1.7e-07 Score=110.12 Aligned_cols=248 Identities=7% Similarity=0.010 Sum_probs=159.9
Q ss_pred CcEEEEEEeC-CCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCC--eEEEEeCCCCceeE
Q 001039 924 AQVSCVRMLS-GERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDA--VANIWDIRAGRQMH 1000 (1179)
Q Consensus 924 ~~V~~l~~s~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg--~I~iwD~~~~~~~~ 1000 (1179)
.....+++.+ ++.+++...++.|+.||..++........... .. ++|+++++.++++..++ .|.+||...+....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 3578899984 55455555678999999998877665544333 33 99999999998888766 89999987665544
Q ss_pred Ee----ecCCCCeEEEEEcC--CEEEEEeCCCcEEEEEccCCeeeEE----eecCCcCE--EEEEEecC-CCEEEEEeCC
Q 001039 1001 KF----LGHTKWIRSIRMDR--DTVITGSDDWTARMWSISRGTCDAV----LACHAGPV--QCVEYSSS-DRGIITGSSD 1067 (1179)
Q Consensus 1001 ~~----~~~~~~I~sl~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~----~~~h~~~V--~~l~~spd-g~~l~sgs~D 1067 (1179)
.+ ......+.++++++ ..|+.+..++.|+.||..++..... ..++...- ..++|+|+ +..+++...+
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~ 288 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL 288 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence 43 22456677888876 3666677789999999987764332 22222222 39999995 5555566678
Q ss_pred CcEEEEEcCCCCcceEEEeec---c-----------cCceEEEEecCCCEEEEEE-CCCcEEEEeCCCCCcCcccCCCCc
Q 001039 1068 GLLRFWENDDAGGIKCVKNVT---I-----------HSSAILSINAGDHWLGIGA-ADNSMSLFHRPQERLGGFSGTGSK 1132 (1179)
Q Consensus 1068 g~I~iwd~~~~~~~~~~~~~~---~-----------h~~~i~sis~dg~~lasgs-~Dg~I~iwd~~~~~~~~~~~~g~~ 1132 (1179)
+.|+.|+.+.. ...+.... + ....-.+++++|+++++-+ .++.|+.|++.++.+..+.+.+..
T Consensus 289 ~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~ 366 (409)
T 3hrp_A 289 SSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDV 366 (409)
T ss_dssp TEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTC
T ss_pred CEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCC
Confidence 88999987652 22221110 0 1122256688999877777 789999999764433222221100
Q ss_pred cccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001039 1133 MSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEAT 1176 (1179)
Q Consensus 1133 ~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~ 1176 (1179)
..+.--......-....+++++++|.++++-..++.|+.++++
T Consensus 367 -~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 367 -ASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp -BSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred -CCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence 0000000001122458899999999888888888999988753
No 213
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.12 E-value=2.9e-08 Score=115.93 Aligned_cols=257 Identities=13% Similarity=0.035 Sum_probs=174.5
Q ss_pred eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceeccccccCCCCEEEEEe----------C
Q 001039 790 VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGS----------T 859 (1179)
Q Consensus 790 I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs----------~ 859 (1179)
|.+.|..+.+ .+..+..-..+ .++++ |||++++.+. .
T Consensus 101 VsVID~~t~~-------------------vv~~I~vG~~P--gia~S------------pDgk~lyVan~~~~~~~~G~~ 147 (426)
T 3c75_H 101 QFVIDGSTGR-------------------ILGMTDGGFLP--HPVAA------------EDGSFFAQASTVFERIARGKR 147 (426)
T ss_dssp EEEEETTTTE-------------------EEEEEEECSSC--EEEEC------------TTSSCEEEEEEEEEETTEEEE
T ss_pred EEEEECCCCE-------------------EEEEEECCCCC--ceEEC------------CCCCEEEEEeccccccccCCC
Confidence 8899998877 55556544455 78887 8999888776 4
Q ss_pred CCcEEEEcCCCCCceeEEEecc---------ccccEEEEecCCCEEEEEeC--CCcEEEEECCCCeEEEEeecCCCcEEE
Q 001039 860 DCLVKIWDPSLRGSELRATLKG---------HTRTVRAINSDRGKVVSGSD--DQSVLVWDKQTSQLLEELKGHDAQVSC 928 (1179)
Q Consensus 860 Dg~I~lWd~~~~~~~~~~~l~~---------h~~~v~~~s~d~~~l~sgs~--dg~I~iwd~~t~~~~~~~~~h~~~V~~ 928 (1179)
++.|.++|.. +.+....+.- ....-..+++||++++++.. +++|.+.|..+++.+.++..... ..
T Consensus 148 ~~~VsviD~~--t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~--~~ 223 (426)
T 3c75_H 148 TDYVEVFDPV--TFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC--YH 223 (426)
T ss_dssp EEEEEEECTT--TCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EE
T ss_pred CCEEEEEECC--CCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc--ee
Confidence 6789999976 4444444421 11122368999999999874 57899999999999998875332 12
Q ss_pred EEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEe----ccCCCc-EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee--EE
Q 001039 929 VRMLSGERVLTASHDGTVKMWDVRTDTCVATV----GRCSSA-VLCMEYDDSTGILAAGGRDAVANIWDIRAGRQM--HK 1001 (1179)
Q Consensus 929 l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~----~~~~~~-v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~--~~ 1001 (1179)
+.-.....+++.+.||++.+.+..+++..... .....+ ...+.+++++..++..+..+.+.+.|....... ..
T Consensus 224 ~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~ 303 (426)
T 3c75_H 224 IFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAP 303 (426)
T ss_dssp EEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCC
T ss_pred eccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeee
Confidence 22123466778888999999998766655321 111111 123567898888888788899999998755421 11
Q ss_pred ee------------cCCCCeEEEEEcCCEEEEEeC----------CCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCC
Q 001039 1002 FL------------GHTKWIRSIRMDRDTVITGSD----------DWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDR 1059 (1179)
Q Consensus 1002 ~~------------~~~~~I~sl~~~~~~l~sgs~----------dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~ 1059 (1179)
+. ........+..+++.+++... ++.|.++|..+.+.+..+... ....+++|+|||+
T Consensus 304 ~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~ 382 (426)
T 3c75_H 304 IEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAE 382 (426)
T ss_dssp EESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSS
T ss_pred eeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCC
Confidence 11 011111233335555555432 357999999999999888632 3588999999999
Q ss_pred -EEEEEe-CCCcEEEEEcCCCCcceEEEee
Q 001039 1060 -GIITGS-SDGLLRFWENDDAGGIKCVKNV 1087 (1179)
Q Consensus 1060 -~l~sgs-~Dg~I~iwd~~~~~~~~~~~~~ 1087 (1179)
++++.. .++.|.++|..+ .+.++++
T Consensus 383 ~~lyv~n~~s~~VsVID~~t---~kvv~tI 409 (426)
T 3c75_H 383 PLLYALSAGTQTLHIYDAAT---GEELRSV 409 (426)
T ss_dssp CEEEEEETTTTEEEEEETTT---CCEEEEE
T ss_pred EEEEEEcCCCCeEEEEECCC---CCEEEEe
Confidence 888887 599999999999 4555554
No 214
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.11 E-value=1.6e-08 Score=113.67 Aligned_cols=226 Identities=8% Similarity=0.053 Sum_probs=153.4
Q ss_pred EEecCCCEEEE-------EeCCCcEEEEECCCCeEEEEee----cCCCcEEEEEEeCC-CEEEEEEcCCeEEEEeCCCCe
Q 001039 888 AINSDRGKVVS-------GSDDQSVLVWDKQTSQLLEELK----GHDAQVSCVRMLSG-ERVLTASHDGTVKMWDVRTDT 955 (1179)
Q Consensus 888 ~~s~d~~~l~s-------gs~dg~I~iwd~~t~~~~~~~~----~h~~~V~~l~~s~~-~~l~sgs~dg~I~iwd~~~~~ 955 (1179)
++++++..+++ +..++.|.+||..+++...... ++...+.++++.++ ..++.++..+.|.+||.. ++
T Consensus 24 ~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~ 102 (314)
T 1pjx_A 24 VFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD-GT 102 (314)
T ss_dssp EECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT-SC
T ss_pred eECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEEEEeCC-CC
Confidence 46778877777 5678899999988887643322 24467889999855 666667666689999988 76
Q ss_pred EEEE-ecc----CCCcEEEEEEcCCCCEEEEEeCC---------------CeEEEEeCCCCceeEEeecCCCCeEEEEEc
Q 001039 956 CVAT-VGR----CSSAVLCMEYDDSTGILAAGGRD---------------AVANIWDIRAGRQMHKFLGHTKWIRSIRMD 1015 (1179)
Q Consensus 956 ~~~~-~~~----~~~~v~~l~~sp~~~~l~sgs~d---------------g~I~iwD~~~~~~~~~~~~~~~~I~sl~~~ 1015 (1179)
.... ... ....+.+++++++|+++++...+ +.|..||.. ++... +..+......++++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~-~~~~~~~~~~i~~~ 180 (314)
T 1pjx_A 103 FEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ-VDTAFQFPNGIAVR 180 (314)
T ss_dssp EEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE-EEEEESSEEEEEEE
T ss_pred EEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE-eccCCCCcceEEEe
Confidence 5433 221 12357899999999887776654 578888866 54433 22333456777777
Q ss_pred ----CC--EEEEE-eCCCcEEEEEcc-CCee-----eEEeecCC-cCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcc
Q 001039 1016 ----RD--TVITG-SDDWTARMWSIS-RGTC-----DAVLACHA-GPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGI 1081 (1179)
Q Consensus 1016 ----~~--~l~sg-s~dg~I~iwd~~-~~~~-----~~~~~~h~-~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~ 1081 (1179)
++ .++.+ ..++.|.+||.+ +++. ...+..+. ..+..++++++|+..++...++.|.+||.+++...
T Consensus 181 ~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~ 260 (314)
T 1pjx_A 181 HMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPK 260 (314)
T ss_dssp ECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCS
T ss_pred cccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEe
Confidence 65 44444 567899999986 4542 22333333 56889999999998888888899999998853322
Q ss_pred eEEEeecccCceEEEE--ecCCCEEEEE-ECCCcEEEEeCC
Q 001039 1082 KCVKNVTIHSSAILSI--NAGDHWLGIG-AADNSMSLFHRP 1119 (1179)
Q Consensus 1082 ~~~~~~~~h~~~i~si--s~dg~~lasg-s~Dg~I~iwd~~ 1119 (1179)
. .+..+...+.++ +++++.|+++ ..++.|..|++.
T Consensus 261 ~---~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 261 M---RIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp E---EEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred E---EEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence 2 233343444444 6899855544 456899999986
No 215
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.11 E-value=1.5e-09 Score=123.18 Aligned_cols=292 Identities=13% Similarity=0.047 Sum_probs=186.4
Q ss_pred EEccCCCceeeccCc-eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceeccccccCCCCE
Q 001039 775 MFSREASSRSHSFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGF 853 (1179)
Q Consensus 775 ~fSpdg~~las~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~ 853 (1179)
....+|...+.+... |..|| .++. .......+...+.++... +++.
T Consensus 26 ~~d~~g~l~v~t~~~~l~~~d-~~g~-------------------~~~~~~~~~~~~~~~~~~------------~~g~- 72 (330)
T 3hxj_A 26 ILAKNGTIYLGSSNKNLYAIN-TDGS-------------------VKWFFKSGEIIECRPSIG------------KDGT- 72 (330)
T ss_dssp EECTTSCEECSSTTTTTEEEC-TTSC-------------------EEESSCGGGEEEECCEET------------TTTE-
T ss_pred eEccCCeEEEEcCCCEEEEEC-CCCc-------------------EEEEEecCCCcccceEEe------------cCCc-
Confidence 666777655544344 88888 6555 111122233334444442 3444
Q ss_pred EEEEeCCCcEEEEcCCCCCceeEEEeccccccE--EEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEE
Q 001039 854 FISGSTDCLVKIWDPSLRGSELRATLKGHTRTV--RAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRM 931 (1179)
Q Consensus 854 Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v--~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~ 931 (1179)
++.|+.+ |..+|.. +. .......+.... ..+. +..+..++.++.+..+|.. ++.......+...+.++..
T Consensus 73 l~v~t~~--l~~~d~~--g~-~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~ 144 (330)
T 3hxj_A 73 IYFGSDK--VYAINPD--GT-EKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIV 144 (330)
T ss_dssp ECCSSCE--EEEECCC--GG-GGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEE
T ss_pred EEEecCc--EEEECCC--Cc-EEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEE
Confidence 5555544 8888843 22 211121111111 1223 6778889889999999988 8887777666655666666
Q ss_pred eCCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEE
Q 001039 932 LSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRS 1011 (1179)
Q Consensus 932 s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~s 1011 (1179)
.++..++.++.++.+..+|.. ++...........+.++..++++...+ ++ +.+..+| .+++...........+.+
T Consensus 145 ~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~ 219 (330)
T 3hxj_A 145 SEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTR 219 (330)
T ss_dssp CTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSC
T ss_pred cCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceec
Confidence 655668888888999999998 877776655556677777877887554 44 8899999 788877777666667888
Q ss_pred EEEcCC-EEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeeccc
Q 001039 1012 IRMDRD-TVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIH 1090 (1179)
Q Consensus 1012 l~~~~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h 1090 (1179)
+..+++ .+..++.++.|..+| .+++....+......+.++...+++ .|..++.+|.|..+|. ++. .+......
T Consensus 220 ~~~~~~g~l~v~t~~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~---~~~~~~~~ 293 (330)
T 3hxj_A 220 PAISEDGTIYVTSLDGHLYAIN-PDGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGT---EKWNFETG 293 (330)
T ss_dssp CEECTTSCEEEEETTTEEEEEC-TTSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSC---EEEEEECS
T ss_pred eEECCCCeEEEEcCCCeEEEEC-CCCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC-CCc---EEEEEEcC
Confidence 888765 888888889999998 4566666665444444555665555 5667888888999985 422 22222222
Q ss_pred CceEEEE--ecCCCEEEEEECCCcEEEEeCC
Q 001039 1091 SSAILSI--NAGDHWLGIGAADNSMSLFHRP 1119 (1179)
Q Consensus 1091 ~~~i~si--s~dg~~lasgs~Dg~I~iwd~~ 1119 (1179)
...+.++ ..+|. |..|+.+|.+++...+
T Consensus 294 ~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 294 SWIIATPVIDENGT-IYFGTRNGKFYALFNL 323 (330)
T ss_dssp SCCCSCCEECTTCC-EEEECTTSCEEEEEC-
T ss_pred CccccceEEcCCCE-EEEEcCCCeEEEEecc
Confidence 3333333 34554 6668899999998765
No 216
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.08 E-value=3.6e-08 Score=115.81 Aligned_cols=222 Identities=12% Similarity=0.101 Sum_probs=154.0
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEEEeCCC--cEEEEECCCCeEEEEe----ecC
Q 001039 849 EDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQ--SVLVWDKQTSQLLEEL----KGH 922 (1179)
Q Consensus 849 ~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~sgs~dg--~I~iwd~~t~~~~~~~----~~h 922 (1179)
++++++++...++.|++||.. +..+............+++++++.++++..++ .|.+|+..++.....+ ...
T Consensus 140 ~~g~lyv~d~~~~~I~~id~~--~g~~~~~~~~~~~~~ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~ 217 (409)
T 3hrp_A 140 GNNTVLAYQRDDPRVRLISVD--DNKVTTVHPGFKGGKPAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTF 217 (409)
T ss_dssp STTEEEEEETTTTEEEEEETT--TTEEEEEEETCCBCBCEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTS
T ss_pred CCCCEEEEecCCCcEEEEECC--CCEEEEeeccCCCCceeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchh
Confidence 888888888888999999976 33333333322222267899999999998866 7999998766543333 224
Q ss_pred CCcEEEEEEeC-CCEEEEEEcCCeEEEEeCCCCeEEEE----eccCCCcE--EEEEEcCC-CCEEEEEeCCCeEEEEeCC
Q 001039 923 DAQVSCVRMLS-GERVLTASHDGTVKMWDVRTDTCVAT----VGRCSSAV--LCMEYDDS-TGILAAGGRDAVANIWDIR 994 (1179)
Q Consensus 923 ~~~V~~l~~s~-~~~l~sgs~dg~I~iwd~~~~~~~~~----~~~~~~~v--~~l~~sp~-~~~l~sgs~dg~I~iwD~~ 994 (1179)
...+.++++++ +..++++..++.|..||..++..... ..+....- ..++++|+ +.++++-..++.|+.||..
T Consensus 218 ~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~ 297 (409)
T 3hrp_A 218 SGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPD 297 (409)
T ss_dssp CSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred cCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecC
Confidence 56678889885 67777777889999999987764332 21222222 28999995 5555555677899999976
Q ss_pred CCceeEEeecCC---------------CCeEEEEEcC--CEEEEEe-CCCcEEEEEccCCeeeEEeecC-----------
Q 001039 995 AGRQMHKFLGHT---------------KWIRSIRMDR--DTVITGS-DDWTARMWSISRGTCDAVLACH----------- 1045 (1179)
Q Consensus 995 ~~~~~~~~~~~~---------------~~I~sl~~~~--~~l~sgs-~dg~I~iwd~~~~~~~~~~~~h----------- 1045 (1179)
.. +..+.++. .....+++++ +++++-+ .++.|+.||..++.. ..+.++
T Consensus 298 g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~ 374 (409)
T 3hrp_A 298 GE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQVDVASQIDGTP 374 (409)
T ss_dssp CC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEECTTCBSCCCBST
T ss_pred CC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCCh
Confidence 43 33333332 3477888864 4666666 789999999877764 344333
Q ss_pred ----CcCEEEEEEecCCCEEEEEeCCCcEEEEEc
Q 001039 1046 ----AGPVQCVEYSSSDRGIITGSSDGLLRFWEN 1075 (1179)
Q Consensus 1046 ----~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~ 1075 (1179)
-.....++++++|.++++-..++.|+.+++
T Consensus 375 ~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 375 LEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred hceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 245889999999888888888888888765
No 217
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.07 E-value=1.5e-09 Score=122.99 Aligned_cols=290 Identities=14% Similarity=0.057 Sum_probs=183.8
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEEec-CCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEE
Q 001039 851 AGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINS-DRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCV 929 (1179)
Q Consensus 851 ~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~-d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l 929 (1179)
+..++.|+.++.|..|| . ..+.......+...+.++.. .+..+..++.+ +..+|. +++....+..........
T Consensus 30 ~g~l~v~t~~~~l~~~d-~--~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~ 103 (330)
T 3hxj_A 30 NGTIYLGSSNKNLYAIN-T--DGSVKWFFKSGEIIECRPSIGKDGTIYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDF 103 (330)
T ss_dssp TSCEECSSTTTTTEEEC-T--TSCEEESSCGGGEEEECCEETTTTEECCSSCE--EEEECC-CGGGGGGSCC-----CCE
T ss_pred CCeEEEEcCCCEEEEEC-C--CCcEEEEEecCCCcccceEEecCCcEEEecCc--EEEECC-CCcEEEEEECCCCcccCc
Confidence 44566777788899999 4 23333333333333444433 24566666655 888886 565444333222222223
Q ss_pred EEeCCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCe
Q 001039 930 RMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWI 1009 (1179)
Q Consensus 930 ~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I 1009 (1179)
... ++.+++++.++.+..+|.. ++...........+.++...+++. +..++.++.|..+|.. ++....+......+
T Consensus 104 ~~~-~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~ 179 (330)
T 3hxj_A 104 TIF-EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAIT 179 (330)
T ss_dssp EEE-TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCC
T ss_pred eEE-CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCce
Confidence 333 6778889889999999988 777766655555566677777776 5567788999999998 88777776666667
Q ss_pred EEEEEc-CCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeec
Q 001039 1010 RSIRMD-RDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVT 1088 (1179)
Q Consensus 1010 ~sl~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~ 1088 (1179)
.++..+ ...+..++ +.|..+| .+++...........+.++..+++|. +..++.++.+..+|... . .+....
T Consensus 180 ~~~~~d~~g~l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~g-~---~~~~~~ 251 (330)
T 3hxj_A 180 SAASIGKDGTIYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPDG-T---EKWRFK 251 (330)
T ss_dssp SCCEECTTCCEEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTTS-C---EEEEEE
T ss_pred eeeEEcCCCEEEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECCCC-C---EeEEee
Confidence 777774 44566666 8899999 77877777766666788888888875 55566777888887433 2 222222
Q ss_pred ccCceE--EEEecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeC
Q 001039 1089 IHSSAI--LSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGR 1166 (1179)
Q Consensus 1089 ~h~~~i--~sis~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~ 1166 (1179)
.....+ ..+.. +..|.+|+.+|.|..+|.... ...........+.++..+++|+ |..++.
T Consensus 252 ~~~~~~~~~~~~~-~g~l~v~t~~ggl~~~d~~g~----------------~~~~~~~~~~~~~~~~~d~~g~-l~~gt~ 313 (330)
T 3hxj_A 252 TGKRIESSPVIGN-TDTIYFGSYDGHLYAINPDGT----------------EKWNFETGSWIIATPVIDENGT-IYFGTR 313 (330)
T ss_dssp CSSCCCSCCEECT-TSCEEEECTTCEEEEECTTSC----------------EEEEEECSSCCCSCCEECTTCC-EEEECT
T ss_pred CCCCccccceEcC-CCeEEEecCCCCEEEECCCCc----------------EEEEEEcCCccccceEEcCCCE-EEEEcC
Confidence 222211 12233 446777888889999985311 1111112244566777778886 555889
Q ss_pred CCcEEEEECC
Q 001039 1167 NGLLRLWEAT 1176 (1179)
Q Consensus 1167 Dg~I~vWdv~ 1176 (1179)
+|.+++...+
T Consensus 314 ~G~~~~~~~~ 323 (330)
T 3hxj_A 314 NGKFYALFNL 323 (330)
T ss_dssp TSCEEEEEC-
T ss_pred CCeEEEEecc
Confidence 9999987654
No 218
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.06 E-value=8.9e-09 Score=118.26 Aligned_cols=247 Identities=13% Similarity=-0.009 Sum_probs=167.1
Q ss_pred cEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEE----------cCCeEEEEeCCCCeEEEEeccC-------CC
Q 001039 904 SVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTAS----------HDGTVKMWDVRTDTCVATVGRC-------SS 965 (1179)
Q Consensus 904 ~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs----------~dg~I~iwd~~~~~~~~~~~~~-------~~ 965 (1179)
+|.++|..+++.+.++.....+ .+.++ ++.+++++. .++.|.+||..+++.+.++... ..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 8889999999999999866666 78898 677777775 3789999999999999887533 12
Q ss_pred cEEEEEEcCCCCEEEEEeC--CCeEEE--EeCCCCceeEEeecCCCCeEEEEEcC-CEEEEEeCCCcEEEEEccC-----
Q 001039 966 AVLCMEYDDSTGILAAGGR--DAVANI--WDIRAGRQMHKFLGHTKWIRSIRMDR-DTVITGSDDWTARMWSISR----- 1035 (1179)
Q Consensus 966 ~v~~l~~sp~~~~l~sgs~--dg~I~i--wD~~~~~~~~~~~~~~~~I~sl~~~~-~~l~sgs~dg~I~iwd~~~----- 1035 (1179)
....++++|||++++++.. ++.+.+ +|..+ +..+.... . ..+..++ ..+++.+.||.+.+.|+.+
T Consensus 125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~-~-~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~ 199 (368)
T 1mda_H 125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS-C-FHIHPGAAATHYLGSCPASLAASDLAAAPAAA 199 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS-C-CCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC-c-eEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence 3568999999999999874 467888 99877 44443211 1 1123333 3566777899999999876
Q ss_pred CeeeEE----eecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeec------------ccCceEEEEec
Q 001039 1036 GTCDAV----LACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVT------------IHSSAILSINA 1099 (1179)
Q Consensus 1036 ~~~~~~----~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~------------~h~~~i~sis~ 1099 (1179)
++.... +.....+. . ++++..++..+. +.+.+.|..+.. ...+..+. ........+++
T Consensus 200 ~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~-~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~ 273 (368)
T 1mda_H 200 GIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAG-ATMKAAIDGNESGRKADNFRSAGFQMVAKLK 273 (368)
T ss_dssp EECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSC-CEEECCCCSSCTHHHHTTEEECSSSCEEEET
T ss_pred CeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCc-ceEEEEEEeccccccccccccCcceeeEEcC
Confidence 433211 11122333 3 677777766667 899999986522 22222221 11122257899
Q ss_pred CCCEEEEEEC---------CCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCC-EEEEEe-CCC
Q 001039 1100 GDHWLGIGAA---------DNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERK-RICSGG-RNG 1168 (1179)
Q Consensus 1100 dg~~lasgs~---------Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~-~Lasgs-~Dg 1168 (1179)
+++.+.++.. ++.+.++|+.+. +.+..+... ....+++|+|||+ .+++.. .++
T Consensus 274 dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~---------------~vv~~i~vg-~~p~gi~~s~Dg~~l~va~~~~~~ 337 (368)
T 1mda_H 274 NTDGIMILTVEHSRSCLAAAENTSSVTASVG---------------QTSGPISNG-HDSDAIIAAQDGASDNYANSAGTE 337 (368)
T ss_dssp TTTEEEEEEEECSSCTTSCEEEEEEEESSSC---------------CEEECCEEE-EEECEEEECCSSSCEEEEEETTTT
T ss_pred CCCEEEEEeccccCcccccCCCEEEEECCCC---------------eEEEEEECC-CCcceEEECCCCCEEEEEccCCCC
Confidence 9998887643 235679999844 222222211 1478999999998 456666 599
Q ss_pred cEEEEECCCCC
Q 001039 1169 LLRLWEATINI 1179 (1179)
Q Consensus 1169 ~I~vWdv~tg~ 1179 (1179)
+|.++|+.|++
T Consensus 338 ~VsVID~~t~k 348 (368)
T 1mda_H 338 VLDIYDAASDQ 348 (368)
T ss_dssp EEEEEESSSCE
T ss_pred eEEEEECCCCc
Confidence 99999999864
No 219
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.06 E-value=3.1e-09 Score=122.38 Aligned_cols=172 Identities=14% Similarity=0.085 Sum_probs=136.3
Q ss_pred cccEEEEecCCCEEEEEeCCCcEEEEECCCCe-----------EEEEeecCCCcEEEEEEeCCCEEEEEEcCCeEEEEeC
Q 001039 883 TRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQ-----------LLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDV 951 (1179)
Q Consensus 883 ~~~v~~~s~d~~~l~sgs~dg~I~iwd~~t~~-----------~~~~~~~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~ 951 (1179)
.....++++..+.+++|+.++ +.+|++++.+ ..... .+.. |+.++| ++..++++ .+|.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f-d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF-HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE-ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE-CCCEEEEE-cCCcEEEEEc
Confidence 345557899999999999985 6669865332 11222 2455 999999 88999988 8899999999
Q ss_pred CCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcCCEEEEEeCCCcEEEE
Q 001039 952 RTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMW 1031 (1179)
Q Consensus 952 ~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~~l~sgs~dg~I~iw 1031 (1179)
.+.........+...+.++.+.+.. +++++.||.|.+||+.++.... +...|++++|+++-++.|..||++++|
T Consensus 114 ~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG~~vg~~dg~i~~~ 187 (388)
T 1xip_A 114 EELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQLAVLLKDRSFQSF 187 (388)
T ss_dssp SSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSEEEEEETTSCEEEE
T ss_pred hhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCceEEEEcCCcEEEE
Confidence 8876655666667778888776553 8888999999999999887643 345899999999889999999999999
Q ss_pred EccCCee--eEEe------e---cCCcCEEEEEEecCCCEEEEEe
Q 001039 1032 SISRGTC--DAVL------A---CHAGPVQCVEYSSSDRGIITGS 1065 (1179)
Q Consensus 1032 d~~~~~~--~~~~------~---~h~~~V~~l~~spdg~~l~sgs 1065 (1179)
+...++. ..++ . +|...|.++.|.+++.++++-+
T Consensus 188 ~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 188 AWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred cCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 9888775 5566 2 3778999999999999988743
No 220
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.02 E-value=2e-06 Score=110.33 Aligned_cols=357 Identities=12% Similarity=0.117 Sum_probs=218.1
Q ss_pred cceEEEEEccCCCceeeccCceEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccC----ceEEEEeecccceecc
Q 001039 769 RSWVQSMFSREASSRSHSFSRVRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAG----AITALHCVTKREVWDL 844 (1179)
Q Consensus 769 ~~i~~~~fSpdg~~las~~~dI~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~----~V~~v~~s~~~~~~~~ 844 (1179)
..|.++...++|..-+.+...+..||..++. ...+..... .|+++...
T Consensus 88 n~I~~i~~d~~g~lWigT~~Gl~~yd~~~~~--------------------f~~~~~~~~~~~~~i~~i~~d-------- 139 (795)
T 4a2l_A 88 DISRIVKTDSQGRVWIGTRDGLSRYDEEKDI--------------------FQNFFYEKNGKHLQVNGIEEI-------- 139 (795)
T ss_dssp SCEEEEEECTTSCEEEEESSCEEEEETTTTE--------------------EEEECCEETTEECCCCEEEEE--------
T ss_pred cceeEEEECCCCCEEEEeCCchheeCCCCCe--------------------EEeccccccCCCceEEEEEEC--------
Confidence 4577778899997655444339999976543 112221111 17777664
Q ss_pred ccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccc-ccc-EEEEecC-CCEEEEEeCCCcEEEEECCCCeEEEEe-e
Q 001039 845 VGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGH-TRT-VRAINSD-RGKVVSGSDDQSVLVWDKQTSQLLEEL-K 920 (1179)
Q Consensus 845 ~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h-~~~-v~~~s~d-~~~l~sgs~dg~I~iwd~~t~~~~~~~-~ 920 (1179)
++|.+.+ |+. +.|..||.. .........++ ... |.++..+ +..+..|+.++.+..||..+++..... .
T Consensus 140 ----~~g~lwi-~t~-~gl~~~~~~--~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~ 211 (795)
T 4a2l_A 140 ----SPEQLLI-STP-EGLIMFDIK--ESKFIDDSFSTAMHKTIASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIPI 211 (795)
T ss_dssp ----ETTEEEE-EET-TEEEEEETT--TTEEECSSSCHHHHTCCEEEEEEETTEEEEEESSSCEEEEETTTCCEEECC--
T ss_pred ----CCCCEEE-EEC-CceEEEECC--CCEEEeccCCCCCCcceEEEEECCCCCEEEEECCCCEEEEeCCCCeEEEecCC
Confidence 4565554 444 458889864 22221111111 112 6655322 345666776656899998877654321 1
Q ss_pred cCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEecc-------CCCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 001039 921 GHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGR-------CSSAVLCMEYDDSTGILAAGGRDAVANIWDI 993 (1179)
Q Consensus 921 ~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-------~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~ 993 (1179)
.+...|.++.....+.+..|+.++-+..||..+++....... ....|.++..+++|.+.+ |+.+ -|.+||.
T Consensus 212 ~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~ 289 (795)
T 4a2l_A 212 LGTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHE 289 (795)
T ss_dssp --CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEET
T ss_pred CCCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcC
Confidence 234568888777666777788766689999888765443321 245699999998887554 5555 5889998
Q ss_pred CCCceeEEeec-------CCCCeEEEEEcCC-EEEEEeCCCcEEEEEccCCeeeEEee------cCCcCEEEEEEecCCC
Q 001039 994 RAGRQMHKFLG-------HTKWIRSIRMDRD-TVITGSDDWTARMWSISRGTCDAVLA------CHAGPVQCVEYSSSDR 1059 (1179)
Q Consensus 994 ~~~~~~~~~~~-------~~~~I~sl~~~~~-~l~sgs~dg~I~iwd~~~~~~~~~~~------~h~~~V~~l~~spdg~ 1059 (1179)
.+++....... ....|.++..+.+ .+..|+.++-|..|+..++....... .....|.++..+++|.
T Consensus 290 ~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~ 369 (795)
T 4a2l_A 290 GTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN 369 (795)
T ss_dssp TTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC
T ss_pred CCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC
Confidence 77654432211 2357889988654 77888888889999876654322211 1245699999988887
Q ss_pred EEEEEeCCCcEEEEEcCCCCcceEEEeec------ccCceEEEE--ecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCC
Q 001039 1060 GIITGSSDGLLRFWENDDAGGIKCVKNVT------IHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGS 1131 (1179)
Q Consensus 1060 ~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~------~h~~~i~si--s~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~ 1131 (1179)
|..|+.++-|..||..++. ........ .....|.++ ..+|+.|.+|+.++-|..||..+++...+...
T Consensus 370 -lWiGt~~~Gl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~-- 445 (795)
T 4a2l_A 370 -LWIGTNDGGLNLYNPITQR-FTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQR-- 445 (795)
T ss_dssp -EEEEESSSCEEEECTTTCC-EEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTT--
T ss_pred -EEEEECCCCeEEEcCCCCc-EEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecC--
Confidence 5557777679999987632 22221110 123456676 45676577788888899999875432111110
Q ss_pred ccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001039 1132 KMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATIN 1178 (1179)
Q Consensus 1132 ~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~tg 1178 (1179)
....+...|.++...++|.+.+.. .+ -+.+|+.+++
T Consensus 446 ---------~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~~ 481 (795)
T 4a2l_A 446 ---------NSQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQR 481 (795)
T ss_dssp ---------TSCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTTT
T ss_pred ---------CCCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCCC
Confidence 001234579999999988866544 44 4888887764
No 221
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.02 E-value=5.7e-08 Score=121.64 Aligned_cols=267 Identities=11% Similarity=0.092 Sum_probs=173.1
Q ss_pred CCCEEEEEeCCCcEEEEcCCCCCceeEEEeccc-c----ccEE-EEecCCCEEEEEeC------CCcEEEEECCCCeEEE
Q 001039 850 DAGFFISGSTDCLVKIWDPSLRGSELRATLKGH-T----RTVR-AINSDRGKVVSGSD------DQSVLVWDKQTSQLLE 917 (1179)
Q Consensus 850 d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h-~----~~v~-~~s~d~~~l~sgs~------dg~I~iwd~~t~~~~~ 917 (1179)
++..++.++.|+.|..+|.. +.+.+.....+ . ..+. +-...+..+++++. +|.|+.+|..+|+.+.
T Consensus 127 ~~~~v~v~~~dg~l~alD~~--tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W 204 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAA--TGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKW 204 (677)
T ss_dssp ETTEEEEECTTSEEEEEETT--TCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred ECCEEEEEcCCCEEEEEECC--CCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEE
Confidence 36678888999999999976 34444444433 1 1111 11113455666553 7999999999999998
Q ss_pred EeecCCCc--------------------------------EEEEEEe-CCCEEEEEEcCC-------------------e
Q 001039 918 ELKGHDAQ--------------------------------VSCVRML-SGERVLTASHDG-------------------T 945 (1179)
Q Consensus 918 ~~~~h~~~--------------------------------V~~l~~s-~~~~l~sgs~dg-------------------~ 945 (1179)
.+...... ...+++. +++.++.++.++ .
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~s 284 (677)
T 1kb0_A 205 RWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLAS 284 (677)
T ss_dssp EEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred EeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEE
Confidence 87643211 0234555 567788777654 5
Q ss_pred EEEEeCCCCeEEEEecc--CC-------CcEEEEEEcCCC---CEEEEEeCCCeEEEEeCCCCceeEEeecCC-CC----
Q 001039 946 VKMWDVRTDTCVATVGR--CS-------SAVLCMEYDDST---GILAAGGRDAVANIWDIRAGRQMHKFLGHT-KW---- 1008 (1179)
Q Consensus 946 I~iwd~~~~~~~~~~~~--~~-------~~v~~l~~sp~~---~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~-~~---- 1008 (1179)
|..+|.++|+.+..++. +. .....+....+| ..++.++.+|.++++|.++|+.+....... ..
T Consensus 285 v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~ 364 (677)
T 1kb0_A 285 IVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGY 364 (677)
T ss_dssp EEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEE
T ss_pred EEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCccccc
Confidence 99999999999887653 21 122333344467 678899999999999999999887654221 00
Q ss_pred ------e------------------------EEEEEcC--CEEEEEeC--------------------------------
Q 001039 1009 ------I------------------------RSIRMDR--DTVITGSD-------------------------------- 1024 (1179)
Q Consensus 1009 ------I------------------------~sl~~~~--~~l~sgs~-------------------------------- 1024 (1179)
+ ..+++++ .++++...
T Consensus 365 d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~ 444 (677)
T 1kb0_A 365 DKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAK 444 (677)
T ss_dssp CTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCE
T ss_pred CCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccccc
Confidence 1 1345554 35555432
Q ss_pred -----------CCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCce
Q 001039 1025 -----------DWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSA 1093 (1179)
Q Consensus 1025 -----------dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~ 1093 (1179)
.|.|..||+.+++.+.... +..++.+..+..++..++.++.||.+++||..+++....+..-.+....
T Consensus 445 ~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~ 523 (677)
T 1kb0_A 445 FFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAA 523 (677)
T ss_dssp EECSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC
T ss_pred ccccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccC
Confidence 2789999999999988876 3344555667778889999999999999999995543333322222223
Q ss_pred EEEEecCCC-EEEEEEC----------------CCcEEEEeCC
Q 001039 1094 ILSINAGDH-WLGIGAA----------------DNSMSLFHRP 1119 (1179)
Q Consensus 1094 i~sis~dg~-~lasgs~----------------Dg~I~iwd~~ 1119 (1179)
......+|+ ++++.+. .+.+.+|.+.
T Consensus 524 p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~ 566 (677)
T 1kb0_A 524 PSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVG 566 (677)
T ss_dssp CEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEET
T ss_pred CEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEecc
Confidence 344457776 4444333 3567777765
No 222
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.01 E-value=1.8e-08 Score=126.33 Aligned_cols=187 Identities=12% Similarity=0.126 Sum_probs=127.3
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCc----------E-EEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEe
Q 001039 892 DRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQ----------V-SCVRMLSGERVLTASHDGTVKMWDVRTDTCVATV 960 (1179)
Q Consensus 892 d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~----------V-~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~ 960 (1179)
.+..+++++.++.|..+|..+|+.+.++...... + ..+.. .+..+++++.|+.|..+|..+|+.+...
T Consensus 69 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 69 VDGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV-WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp ETTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred ECCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE-ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 3677888888999999999999999988643321 1 11222 3678889999999999999999998776
Q ss_pred ccC--CCcEEEEEEcC---CCCEEEEEe------CCCeEEEEeCCCCceeEEeecCC---C-------------------
Q 001039 961 GRC--SSAVLCMEYDD---STGILAAGG------RDAVANIWDIRAGRQMHKFLGHT---K------------------- 1007 (1179)
Q Consensus 961 ~~~--~~~v~~l~~sp---~~~~l~sgs------~dg~I~iwD~~~~~~~~~~~~~~---~------------------- 1007 (1179)
... ......+..+| ++ .+++++ .+|.|..||.++|+.+.++.... .
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 226 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA 226 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred cCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence 542 11101111112 44 444443 36899999999999987764210 0
Q ss_pred --------C-eEEEEEc--CCEEEEEeCCCc-------------------EEEEEccCCeeeEEeec--CC-------cC
Q 001039 1008 --------W-IRSIRMD--RDTVITGSDDWT-------------------ARMWSISRGTCDAVLAC--HA-------GP 1048 (1179)
Q Consensus 1008 --------~-I~sl~~~--~~~l~sgs~dg~-------------------I~iwd~~~~~~~~~~~~--h~-------~~ 1048 (1179)
. -..++++ .+.++.++.++. |..||.++|+.+..++. |. ..
T Consensus 227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~ 306 (689)
T 1yiq_A 227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQH 306 (689)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCC
Confidence 0 0145564 458888887764 99999999999988764 22 12
Q ss_pred EEEEEEecCCC---EEEEEeCCCcEEEEEcCCCCc
Q 001039 1049 VQCVEYSSSDR---GIITGSSDGLLRFWENDDAGG 1080 (1179)
Q Consensus 1049 V~~l~~spdg~---~l~sgs~Dg~I~iwd~~~~~~ 1080 (1179)
........+|+ .++.++.+|.++++|..+++.
T Consensus 307 ~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 341 (689)
T 1yiq_A 307 MILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL 341 (689)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred cEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE
Confidence 22223334665 788999999999999998653
No 223
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.01 E-value=2.6e-07 Score=103.31 Aligned_cols=226 Identities=10% Similarity=0.020 Sum_probs=143.1
Q ss_pred cCCCcEEEEEEeC-C-CEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Q 001039 921 GHDAQVSCVRMLS-G-ERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQ 998 (1179)
Q Consensus 921 ~h~~~V~~l~~s~-~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~ 998 (1179)
....-..+..|++ + ..+++...++.|..||..+++.. .+ .....+.+++++++|+++++ . ++.|.+||..+++.
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~ 85 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSA 85 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEE
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcE
Confidence 3344556778883 3 45556667899999999887653 23 33567999999999995554 4 56899999988765
Q ss_pred eEEeec----CCCCeEEEEEcCC--EEEEEeC---------CCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEE-
Q 001039 999 MHKFLG----HTKWIRSIRMDRD--TVITGSD---------DWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGII- 1062 (1179)
Q Consensus 999 ~~~~~~----~~~~I~sl~~~~~--~l~sgs~---------dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~- 1062 (1179)
...... ....+..++++++ ++++... ...-.+|.+........+..+....+.++|+||++.++
T Consensus 86 ~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv 165 (297)
T 3g4e_A 86 VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYY 165 (297)
T ss_dssp EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEE
T ss_pred EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEE
Confidence 433222 1235778888654 4443322 12345555443222222333445678999999999775
Q ss_pred EEeCCCcEEEEEcC-CCCcc---eEEEeecccCceE--EEEecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccc
Q 001039 1063 TGSSDGLLRFWEND-DAGGI---KCVKNVTIHSSAI--LSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGW 1136 (1179)
Q Consensus 1063 sgs~Dg~I~iwd~~-~~~~~---~~~~~~~~h~~~i--~sis~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~ 1136 (1179)
+.+.++.|.+||++ ..+.. +.+..+..+.... ++++++|++.++...++.|..||..+ |
T Consensus 166 ~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~t---------G------ 230 (297)
T 3g4e_A 166 IDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVT---------G------ 230 (297)
T ss_dssp EEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTT---------C------
T ss_pred ecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCC---------c------
Confidence 45567889999974 22222 2222332222333 45578898888877888999999863 3
Q ss_pred eeeeecCCCcccEEEEEEc-CCCCEEEEEe
Q 001039 1137 QLYRTPQKTVAVVRCIASD-LERKRICSGG 1165 (1179)
Q Consensus 1137 ~~~~~~~~h~~~V~~v~fs-pdg~~Lasgs 1165 (1179)
+.......+...+++++|+ ||++.|..++
T Consensus 231 ~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 231 KRLQTVKLPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp CEEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred eEEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence 3444444555679999998 8988765554
No 224
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.01 E-value=5.1e-09 Score=120.58 Aligned_cols=182 Identities=10% Similarity=-0.014 Sum_probs=134.3
Q ss_pred ceEEEEEccCCCceeeccCc-eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceecccccc
Q 001039 770 SWVQSMFSREASSRSHSFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDR 848 (1179)
Q Consensus 770 ~i~~~~fSpdg~~las~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s 848 (1179)
++..+++++++.++++|+.+ +++|+++.......... .... .. ....+.+ |+.++|
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~-------~~~~-~~-~~~~lp~-V~~l~f------------- 95 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDS-------TPLT-FK-WEKEIPD-VIFVCF------------- 95 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSS-------CCCC-CS-EEEECTT-EEEEEE-------------
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhcccc-------cccc-ce-EEeeCCC-eeEEEE-------------
Confidence 46678999999999999988 88999875431000000 0011 11 2224666 998887
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEE
Q 001039 849 EDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSC 928 (1179)
Q Consensus 849 ~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~ 928 (1179)
|+++|+++ .+|.|++||+... ........|...+.++.+-...+++++.||++.+||+.++.... +...|+|
T Consensus 96 -d~~~L~v~-~~~~l~v~dv~sl--~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~ 167 (388)
T 1xip_A 96 -HGDQVLVS-TRNALYSLDLEEL--SEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ----LAQNVTS 167 (388)
T ss_dssp -ETTEEEEE-ESSEEEEEESSST--TCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE----EEESEEE
T ss_pred -CCCEEEEE-cCCcEEEEEchhh--hccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcccc----ccCCceE
Confidence 48899998 7899999997632 23345566777787775555559999999999999999887653 3468999
Q ss_pred EEEeCCCEEEEEEcCCeEEEEeCCCCeE--EEEe------c---cCCCcEEEEEEcCCCCEEEEEe
Q 001039 929 VRMLSGERVLTASHDGTVKMWDVRTDTC--VATV------G---RCSSAVLCMEYDDSTGILAAGG 983 (1179)
Q Consensus 929 l~~s~~~~l~sgs~dg~I~iwd~~~~~~--~~~~------~---~~~~~v~~l~~sp~~~~l~sgs 983 (1179)
++|++.. ++.|..||++++|+...++. ..++ . +|...|.++.|.+++.++++=+
T Consensus 168 v~WSpkG-~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 168 FDVTNSQ-LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEECSSE-EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEEcCCc-eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 9999655 78899999999999988875 5566 2 3678899999999998887633
No 225
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.00 E-value=1.3e-06 Score=111.88 Aligned_cols=356 Identities=10% Similarity=0.089 Sum_probs=216.9
Q ss_pred eEEEEEccCCCceeeccCceEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEe-cc-cCc-eEEEEeecccceeccccc
Q 001039 771 WVQSMFSREASSRSHSFSRVRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIR-GH-AGA-ITALHCVTKREVWDLVGD 847 (1179)
Q Consensus 771 i~~~~fSpdg~~las~~~dI~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-gH-~~~-V~~v~~s~~~~~~~~~~~ 847 (1179)
|.++...++|...+.+...+..|+..++.. ..+. ++ ... |.++...
T Consensus 133 i~~i~~d~~g~lwi~t~~gl~~~~~~~~~~--------------------~~~~~~~~~~~~i~~i~~d----------- 181 (795)
T 4a2l_A 133 VNGIEEISPEQLLISTPEGLIMFDIKESKF--------------------IDDSFSTAMHKTIASTLYR----------- 181 (795)
T ss_dssp CCEEEEEETTEEEEEETTEEEEEETTTTEE--------------------ECSSSCHHHHTCCEEEEEE-----------
T ss_pred EEEEEECCCCCEEEEECCceEEEECCCCEE--------------------EeccCCCCCCcceEEEEEC-----------
Confidence 667778888877665554488888765431 0000 11 122 7777664
Q ss_pred cCCCCEEEEEeCCCcEEEEcCCCCCceeEEE-eccccccEEEEec-CCCEEEEEeCCCcEEEEECCCCeEEEEeec----
Q 001039 848 REDAGFFISGSTDCLVKIWDPSLRGSELRAT-LKGHTRTVRAINS-DRGKVVSGSDDQSVLVWDKQTSQLLEELKG---- 921 (1179)
Q Consensus 848 s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~-l~~h~~~v~~~s~-d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~---- 921 (1179)
+++. +..|+.++.|..|+.... ..... ...+...|.++.. ....+..|+.++-+..||..+++.......
T Consensus 182 -~~g~-lwigt~~~Gl~~~~~~~~--~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~ 257 (795)
T 4a2l_A 182 -QGDQ-IYIGTSTDGLYTYSITQK--TFEKVIPILGTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNP 257 (795)
T ss_dssp -ETTE-EEEEESSSCEEEEETTTC--CEEECC----CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCT
T ss_pred -CCCC-EEEEECCCCEEEEeCCCC--eEEEecCCCCCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCc
Confidence 4554 444666555888986522 22111 1123455666643 234566666554589999888765443222
Q ss_pred ---CCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEecc-------CCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 001039 922 ---HDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGR-------CSSAVLCMEYDDSTGILAAGGRDAVANIW 991 (1179)
Q Consensus 922 ---h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-------~~~~v~~l~~sp~~~~l~sgs~dg~I~iw 991 (1179)
....|.++.......+..|+.+ -|.+||..+++....... ....|.++..+++|. +..|+.++-|..|
T Consensus 258 ~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~ 335 (795)
T 4a2l_A 258 KSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYY 335 (795)
T ss_dssp TSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEE
T ss_pred cccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEe
Confidence 1356888888766667777776 588999887765443211 235799999999887 5567777788999
Q ss_pred eCCCCceeEEeec-------CCCCeEEEEEcCC-EEEEEeCCCcEEEEEccCCeeeEEeec--------CCcCEEEEEEe
Q 001039 992 DIRAGRQMHKFLG-------HTKWIRSIRMDRD-TVITGSDDWTARMWSISRGTCDAVLAC--------HAGPVQCVEYS 1055 (1179)
Q Consensus 992 D~~~~~~~~~~~~-------~~~~I~sl~~~~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~--------h~~~V~~l~~s 1055 (1179)
|..++... .+.. ....|.++..+.+ .+..|+.++-|..||..+++....... ....|.+++.+
T Consensus 336 ~~~~~~~~-~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d 414 (795)
T 4a2l_A 336 HPIRNRFK-NIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVD 414 (795)
T ss_dssp CGGGGSSE-EECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEE
T ss_pred CCCcccce-EEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEc
Confidence 87655432 2211 2346889988654 677888888899999887765433211 24679999999
Q ss_pred cCCCEEEEEeCCCcEEEEEcCCCCcceEEEeec--ccCceEEEEe--cCCCEEEEEECCCcEEEEeCCCCCcCcccCCCC
Q 001039 1056 SSDRGIITGSSDGLLRFWENDDAGGIKCVKNVT--IHSSAILSIN--AGDHWLGIGAADNSMSLFHRPQERLGGFSGTGS 1131 (1179)
Q Consensus 1056 pdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~--~h~~~i~sis--~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~ 1131 (1179)
++|+.|..|+.++-|..||..++. ...+.... .....|.++. .+|.+ ..|+. +.+.+||..+++...+....
T Consensus 415 ~~g~~lWigt~~~Gl~~~d~~~~~-~~~~~~~~~~l~~~~v~~i~~d~~g~l-wigt~-~Gl~~~~~~~~~~~~~~~~~- 490 (795)
T 4a2l_A 415 EKKSLVYIGTHAGGLSILHRNSGQ-VENFNQRNSQLVNENVYAILPDGEGNL-WLGTL-SALVRFNPEQRSFTTIEKEK- 490 (795)
T ss_dssp TTTTEEEEEETTTEEEEEETTTCC-EEEECTTTSCCSCSCEEEEEECSSSCE-EEEES-SCEEEEETTTTEEEECCBCT-
T ss_pred CCCCEEEEEeCcCceeEEeCCCCc-EEEeecCCCCcCCCeeEEEEECCCCCE-EEEec-CceeEEeCCCCeEEEccccc-
Confidence 999867778777779999987732 22221100 1234677774 44554 44555 45888997643221111000
Q ss_pred ccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001039 1132 KMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATIN 1178 (1179)
Q Consensus 1132 ~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~tg 1178 (1179)
.....+...|.++..+++|.+.+... +-|..|+..++
T Consensus 491 --------~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~ 527 (795)
T 4a2l_A 491 --------DGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGL 527 (795)
T ss_dssp --------TCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETT
T ss_pred --------cccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCC
Confidence 00011235799999999998666444 45777876553
No 226
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.99 E-value=2.7e-08 Score=125.49 Aligned_cols=237 Identities=13% Similarity=0.058 Sum_probs=154.2
Q ss_pred ccCceEEEEeecccceeccccccCCCCEEEEE-----eCCCcEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEEEe
Q 001039 826 HAGAITALHCVTKREVWDLVGDREDAGFFISG-----STDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGS 900 (1179)
Q Consensus 826 H~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasg-----s~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~sgs 900 (1179)
|...+.+++|| |||++||-+ +.+.+|++||+.... .....+.+....-.+|+ |++.|+.++
T Consensus 127 ~~~~l~~~~~S------------pDg~~lAy~~~~~G~~~~~i~v~dl~tg~-~~~~~~~~~k~~~~~Ws-Dg~~l~y~~ 192 (693)
T 3iuj_A 127 GTTALDQLSFS------------RDGRILAYSLSLAGSDWREIHLMDVESKQ-PLETPLKDVKFSGISWL-GNEGFFYSS 192 (693)
T ss_dssp SCCEEEEEEEC------------TTSSEEEEEEECSSCCEEEEEEEETTTCS-EEEEEEEEEESCCCEEE-TTTEEEEEE
T ss_pred CcEEEEEEEEC------------CCCCEEEEEEecCCCceEEEEEEECCCCC-CCccccCCceeccEEEe-CCCEEEEEE
Confidence 55567788887 899998843 334579999987332 22223333222233688 999999988
Q ss_pred CCCc-------------EEEEECCCCe----EEEEeec-CCCcEEEEEEe-CCCEEEEEEc----CCeEEEEeCCCCe-E
Q 001039 901 DDQS-------------VLVWDKQTSQ----LLEELKG-HDAQVSCVRML-SGERVLTASH----DGTVKMWDVRTDT-C 956 (1179)
Q Consensus 901 ~dg~-------------I~iwd~~t~~----~~~~~~~-h~~~V~~l~~s-~~~~l~sgs~----dg~I~iwd~~~~~-~ 956 (1179)
.+.. |++|++.++. .+..... |......+.|+ ++++++.... ++.|.++|+.++. .
T Consensus 193 ~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~ 272 (693)
T 3iuj_A 193 YDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAP 272 (693)
T ss_dssp SSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCC
T ss_pred ecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCc
Confidence 7743 9999998764 3333333 44557788898 6777654432 3589999998763 3
Q ss_pred EEEeccCCCcEEEEEEcCCCCEEEEEeC----CCeEEEEeCCCCce--eEEeecCCCCeEEEEEcCCEEEEEeC-CC--c
Q 001039 957 VATVGRCSSAVLCMEYDDSTGILAAGGR----DAVANIWDIRAGRQ--MHKFLGHTKWIRSIRMDRDTVITGSD-DW--T 1027 (1179)
Q Consensus 957 ~~~~~~~~~~v~~l~~sp~~~~l~sgs~----dg~I~iwD~~~~~~--~~~~~~~~~~I~sl~~~~~~l~sgs~-dg--~ 1027 (1179)
...+..+....... ++++|..++..+. .+.|..+|+.++.. ...+..+...+.+++.+++.|+.... ++ .
T Consensus 273 ~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~s~~g~~lv~~~~~~g~~~ 351 (693)
T 3iuj_A 273 LLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVLTVHSGSGYLFAEYMVDATAR 351 (693)
T ss_dssp CEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEETTEEEEEEEETTEEE
T ss_pred eEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEEEEEEECCEEEEEEEECCeeE
Confidence 34444444444444 5666666555443 36899999988754 34555555544477778887766654 44 6
Q ss_pred EEEEEccCCeeeEEee-cCCcCEEEEEEecCCCEEEEEeCC----CcEEEEEcCCC
Q 001039 1028 ARMWSISRGTCDAVLA-CHAGPVQCVEYSSSDRGIITGSSD----GLLRFWENDDA 1078 (1179)
Q Consensus 1028 I~iwd~~~~~~~~~~~-~h~~~V~~l~~spdg~~l~sgs~D----g~I~iwd~~~~ 1078 (1179)
|++||+..+.. ..+. ...+.+..+.++++++.++....+ +.+..||+.++
T Consensus 352 l~~~d~~g~~~-~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 352 VEQFDYEGKRV-REVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp EEEECTTSCEE-EEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred EEEEECCCCee-EEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 89999875543 4443 345567788888888877766554 78999998774
No 227
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.94 E-value=5.2e-07 Score=100.88 Aligned_cols=209 Identities=7% Similarity=0.021 Sum_probs=136.7
Q ss_pred CCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEE--EEecCCCEEEEEeCCCcEEEEECCCCeEEEEeec----CC
Q 001039 850 DAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKG----HD 923 (1179)
Q Consensus 850 d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~--~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~----h~ 923 (1179)
++.++++...++.|..||... ... ..+. ....+. +++++|+++++ . ++.|.+||..+++....... ..
T Consensus 24 ~~~l~~~d~~~~~i~~~d~~~--~~~-~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~ 97 (297)
T 3g4e_A 24 SNSLLFVDIPAKKVCRWDSFT--KQV-QRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKN 97 (297)
T ss_dssp TTEEEEEETTTTEEEEEETTT--CCE-EEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSS
T ss_pred CCEEEEEECCCCEEEEEECCC--CcE-EEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCC
Confidence 456777777889999999763 222 2221 233444 45788885544 4 56899999988876443322 12
Q ss_pred CcEEEEEEe-CCCEEEEEEc-----------CCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEE-EeCCCeEEE
Q 001039 924 AQVSCVRML-SGERVLTASH-----------DGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAA-GGRDAVANI 990 (1179)
Q Consensus 924 ~~V~~l~~s-~~~~l~sgs~-----------dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s-gs~dg~I~i 990 (1179)
..+..+++. ++..+++... .+.|..+|.. ++... +.........++|+|+++.++. .+.++.|..
T Consensus 98 ~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~ 175 (297)
T 3g4e_A 98 NRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDA 175 (297)
T ss_dssp EEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-EEEEESBEEEEEECTTSCEEEEEEGGGTEEEE
T ss_pred CCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE-EeeccccccceEEcCCCCEEEEecCCCCcEEE
Confidence 457888888 4554443322 1334444432 33322 2233345688999999987754 455789999
Q ss_pred EeC--CCCcee-----EEeecCCCCeEEEEEc--CCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEe-cCCCE
Q 001039 991 WDI--RAGRQM-----HKFLGHTKWIRSIRMD--RDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYS-SSDRG 1060 (1179)
Q Consensus 991 wD~--~~~~~~-----~~~~~~~~~I~sl~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s-pdg~~ 1060 (1179)
||+ .++... ..+..+......++++ +++.++...++.|..||..+++.+..+..+...+++++|. |+++.
T Consensus 176 ~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~ 255 (297)
T 3g4e_A 176 FDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSE 255 (297)
T ss_dssp EEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCE
T ss_pred EeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCE
Confidence 987 455432 2222334567788885 4466666778889999999999999888777889999998 88887
Q ss_pred EEEEeC
Q 001039 1061 IITGSS 1066 (1179)
Q Consensus 1061 l~sgs~ 1066 (1179)
|+.++.
T Consensus 256 L~vt~~ 261 (297)
T 3g4e_A 256 MYVTCA 261 (297)
T ss_dssp EEEEEB
T ss_pred EEEEcC
Confidence 766654
No 228
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.93 E-value=5.1e-08 Score=122.93 Aligned_cols=238 Identities=8% Similarity=0.064 Sum_probs=152.5
Q ss_pred CCCcEEEEEEe-CCCEEEEEE-----cCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCC---------
Q 001039 922 HDAQVSCVRML-SGERVLTAS-----HDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDA--------- 986 (1179)
Q Consensus 922 h~~~V~~l~~s-~~~~l~sgs-----~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg--------- 986 (1179)
+...+..++|+ ++++++-+. ...+|++||+.+++.+... ........++|+ ||+.|+.++.+.
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence 44567888899 677776432 2357999999999865432 111113567899 999999888774
Q ss_pred ----eEEEEeCCCCce--eEEe--ec-CCCCeEEEEEcCC--EEE-EEeC---CCcEEEEEccCCe-eeEEeecCCcCEE
Q 001039 987 ----VANIWDIRAGRQ--MHKF--LG-HTKWIRSIRMDRD--TVI-TGSD---DWTARMWSISRGT-CDAVLACHAGPVQ 1050 (1179)
Q Consensus 987 ----~I~iwD~~~~~~--~~~~--~~-~~~~I~sl~~~~~--~l~-sgs~---dg~I~iwd~~~~~-~~~~~~~h~~~V~ 1050 (1179)
.|++|++.++.. ...+ .. +.....++.++++ +++ +.+. ++.|+++|+.++. ....+..+.....
T Consensus 205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~ 284 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADV 284 (693)
T ss_dssp CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCE
T ss_pred CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceE
Confidence 399999987653 2222 23 3445677888544 543 3332 3589999998764 4455665666655
Q ss_pred EEEEecCCCEEEEEeC-C---CcEEEEEcCCCCcceEEEeecccCceEEEEecCCCEEEEEECCC---cEEEEeCCCCCc
Q 001039 1051 CVEYSSSDRGIITGSS-D---GLLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIGAADN---SMSLFHRPQERL 1123 (1179)
Q Consensus 1051 ~l~~spdg~~l~sgs~-D---g~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~lasgs~Dg---~I~iwd~~~~~~ 1123 (1179)
.. ++++|+.|+..+. + +.|..||+.++... ....+..|...+.+++++++.|+....++ .|++||+.++
T Consensus 285 ~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~-~~~~l~~~~~~~~~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-- 360 (693)
T 3iuj_A 285 SL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA-HWRDLIPERQQVLTVHSGSGYLFAEYMVDATARVEQFDYEGK-- 360 (693)
T ss_dssp EE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG-GCEEEECCCSSCEEEEEETTEEEEEEEETTEEEEEEECTTSC--
T ss_pred EE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc-ccEEEecCCCCEEEEEEECCEEEEEEEECCeeEEEEEECCCC--
Confidence 55 6677776655443 3 57999999875421 11223334333348899998887766544 6888887632
Q ss_pred CcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCC----CcEEEEECCCC
Q 001039 1124 GGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRN----GLLRLWEATIN 1178 (1179)
Q Consensus 1124 ~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~D----g~I~vWdv~tg 1178 (1179)
........+.+.+..+.+++|++.|+....+ ++|..||+.++
T Consensus 361 -------------~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 361 -------------RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp -------------EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred -------------eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 1111122344567788889998877766544 88999998776
No 229
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.92 E-value=1.3e-07 Score=106.21 Aligned_cols=230 Identities=9% Similarity=0.045 Sum_probs=145.7
Q ss_pred EEeecCCCcEEEEEEe-CCC-EEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 001039 917 EELKGHDAQVSCVRML-SGE-RVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIR 994 (1179)
Q Consensus 917 ~~~~~h~~~V~~l~~s-~~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~ 994 (1179)
..+...........|+ +++ .++++..++.|..|+. +++ ...+......+..++++++|+++++...++.|..||..
T Consensus 38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~ 115 (305)
T 3dr2_A 38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD 115 (305)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC
Confidence 3344445566778888 566 5667777899999998 454 34444556778999999999977666566889999986
Q ss_pred CCceeEEeecC----CCCeEEEEEcC--CEEEE----EeC-------------CCcEEEEEccCCeeeEEeecCCcCEEE
Q 001039 995 AGRQMHKFLGH----TKWIRSIRMDR--DTVIT----GSD-------------DWTARMWSISRGTCDAVLACHAGPVQC 1051 (1179)
Q Consensus 995 ~~~~~~~~~~~----~~~I~sl~~~~--~~l~s----gs~-------------dg~I~iwd~~~~~~~~~~~~h~~~V~~ 1051 (1179)
++........ ...+..+++++ +.+++ |.. .+.|..||..+++..... .....+.
T Consensus 116 -g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~g 192 (305)
T 3dr2_A 116 -GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNG 192 (305)
T ss_dssp -SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEE
T ss_pred -CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcc
Confidence 5432221111 12456677754 45554 332 256778887667654433 3456788
Q ss_pred EEEecCCCEEEEEeCC------CcEEEEEcCCCCcceEEEeec-ccC--ceEEEEecCCCEEEEEECCCcEEEEeCCCCC
Q 001039 1052 VEYSSSDRGIITGSSD------GLLRFWENDDAGGIKCVKNVT-IHS--SAILSINAGDHWLGIGAADNSMSLFHRPQER 1122 (1179)
Q Consensus 1052 l~~spdg~~l~sgs~D------g~I~iwd~~~~~~~~~~~~~~-~h~--~~i~sis~dg~~lasgs~Dg~I~iwd~~~~~ 1122 (1179)
++|+||++.|+.+... +.|.+|++...+ ......+. ... ..-+.++++|++. +++.+ .|.+|+....
T Consensus 193 l~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~lw-v~~~~-gv~~~~~~g~- 268 (305)
T 3dr2_A 193 LAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWLW-SSSGT-GVCVFDSDGQ- 268 (305)
T ss_dssp EEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCEE-ECCSS-EEEEECTTSC-
T ss_pred eEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCEE-EecCC-cEEEECCCCC-
Confidence 9999999988877665 689999987632 21111111 011 1125667888844 44444 4999987422
Q ss_pred cCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEE
Q 001039 1123 LGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLR 1171 (1179)
Q Consensus 1123 ~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~ 1171 (1179)
.......+. .+.+++|+++++.|..++.++..+
T Consensus 269 ---------------~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 269 ---------------LLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp ---------------EEEEEECSS-CCCEEEECTTSCEEEEEETTEEEE
T ss_pred ---------------EEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 222222222 478999999999988888775443
No 230
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.91 E-value=1.1e-07 Score=108.84 Aligned_cols=249 Identities=11% Similarity=0.030 Sum_probs=158.8
Q ss_pred EEecCCCEEEEEe--CCCcEEEEECCCCeEEEEee-------cCCCcEEEEEEeCCCEEEEEEc------CCeEEEEeCC
Q 001039 888 AINSDRGKVVSGS--DDQSVLVWDKQTSQLLEELK-------GHDAQVSCVRMLSGERVLTASH------DGTVKMWDVR 952 (1179)
Q Consensus 888 ~~s~d~~~l~sgs--~dg~I~iwd~~t~~~~~~~~-------~h~~~V~~l~~s~~~~l~sgs~------dg~I~iwd~~ 952 (1179)
+++++|+.+++.. .++.++||.+.+++.. .+. .+-..+..+++.+...|+.+.. ++.|.+||+.
T Consensus 23 a~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~ 101 (343)
T 2qe8_A 23 TLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTL 101 (343)
T ss_dssp EECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETT
T ss_pred EECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECC
Confidence 4678898888864 2343555555456543 221 2446789999985455555443 5799999999
Q ss_pred CCeEEEEeccC------CCcEEEEEEcCCCCEE-EEEe---CCCeEEEEeCCCCceeEEeecCCCCe---EEEEEcCCEE
Q 001039 953 TDTCVATVGRC------SSAVLCMEYDDSTGIL-AAGG---RDAVANIWDIRAGRQMHKFLGHTKWI---RSIRMDRDTV 1019 (1179)
Q Consensus 953 ~~~~~~~~~~~------~~~v~~l~~sp~~~~l-~sgs---~dg~I~iwD~~~~~~~~~~~~~~~~I---~sl~~~~~~l 1019 (1179)
+++.+..+... ...+..+++++++..+ ++.. .++.|.+||..+++....+.+|.... ..+..++..+
T Consensus 102 tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~ 181 (343)
T 2qe8_A 102 NNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPV 181 (343)
T ss_dssp TTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEEC
T ss_pred CCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEE
Confidence 99877666422 2356889999865554 4444 57899999999888776665542211 2334456566
Q ss_pred EEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCC----Cc---ce---EEEeecc
Q 001039 1020 ITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDA----GG---IK---CVKNVTI 1089 (1179)
Q Consensus 1020 ~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~----~~---~~---~~~~~~~ 1089 (1179)
.+.+.+|.++.|. ..+..++|+|+|+.|+.+..++. ++|.+... .. .+ .+... +
T Consensus 182 ~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~-g 245 (343)
T 2qe8_A 182 QIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNLQLTDAELGSKIERY-S 245 (343)
T ss_dssp BEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCTTCCHHHHHTTCEEE-E
T ss_pred EeccCCCceecee--------------cccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCCCCChhhhhcceEec-c
Confidence 6677787776653 24678999999999998887763 44444320 00 00 00111 1
Q ss_pred c--CceEEEEecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCC
Q 001039 1090 H--SSAILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRN 1167 (1179)
Q Consensus 1090 h--~~~i~sis~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~D 1167 (1179)
+ ...-++++++|.+.++...++.|.+||..+ |. ...+... .+....++++|+++|+++++.+..
T Consensus 246 ~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~---------G~----~~~~~~~-~~~~~p~~va~~~~g~l~v~~~~~ 311 (343)
T 2qe8_A 246 EKPICDGISIDKDHNIYVGDLAHSAIGVITSAD---------RA----YKLLVTD-EKLSWTDSFNFGSDGYLYFDCNQL 311 (343)
T ss_dssp ECCSCSCEEECTTCCEEEEEGGGTEEEEEETTT---------TE----EEEEEEC-GGGSCEEEEEECTTSCEEEEECCG
T ss_pred cCCCCceEEECCCCCEEEEccCCCeEEEEECCC---------CC----EEEEEEC-CceecCCeeEECCCCcEEEEeCcc
Confidence 1 122357788999999988999999999832 21 0112111 134568999999999988887644
No 231
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.89 E-value=1.8e-07 Score=117.00 Aligned_cols=265 Identities=14% Similarity=0.144 Sum_probs=172.3
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCceeEEEeccccc----------cE-EEEecCCCEEEEEeCCCcEEEEECCCCeEEEEe
Q 001039 851 AGFFISGSTDCLVKIWDPSLRGSELRATLKGHTR----------TV-RAINSDRGKVVSGSDDQSVLVWDKQTSQLLEEL 919 (1179)
Q Consensus 851 ~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~----------~v-~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~ 919 (1179)
+..++.++.++.|..+|.. +.+.+........ .+ .....++..++.++.|+.|..+|..+|+.+..+
T Consensus 66 ~g~vyv~~~~~~v~AlD~~--tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAA--SGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETT--TCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECC--CChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 4556666777888888865 3333333332211 01 112235678899999999999999999999887
Q ss_pred ecCC----CcEEE-EEEeCCCEEEEEEc------CCeEEEEeCCCCeEEEEeccCC---C--------------------
Q 001039 920 KGHD----AQVSC-VRMLSGERVLTASH------DGTVKMWDVRTDTCVATVGRCS---S-------------------- 965 (1179)
Q Consensus 920 ~~h~----~~V~~-l~~s~~~~l~sgs~------dg~I~iwd~~~~~~~~~~~~~~---~-------------------- 965 (1179)
.... ..+.+ ... .++.+++++. +|.|..+|.++|+.+..+.... .
T Consensus 144 ~~~~~~~~~~~~~~P~v-~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~ 222 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRV-VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQY 222 (668)
T ss_dssp ECSCTTSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCH
T ss_pred ccCCCCCcceecCCCEE-ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccce
Confidence 6531 11111 111 2456666543 5899999999999988774210 0
Q ss_pred --------cEEEEEEcCCCCEEEEEeCCC-------------------eEEEEeCCCCceeEEeec--CC-------CCe
Q 001039 966 --------AVLCMEYDDSTGILAAGGRDA-------------------VANIWDIRAGRQMHKFLG--HT-------KWI 1009 (1179)
Q Consensus 966 --------~v~~l~~sp~~~~l~sgs~dg-------------------~I~iwD~~~~~~~~~~~~--~~-------~~I 1009 (1179)
....+++++++..++.++.++ .|..+|.++|+.+..++. |. .+.
T Consensus 223 w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~ 302 (668)
T 1kv9_A 223 WKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQI 302 (668)
T ss_dssp HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCE
T ss_pred eeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCc
Confidence 112468888888888888766 399999999999888764 22 122
Q ss_pred --EEEEEcCC---EEEEEeCCCcEEEEEccCCeeeEEeecCC------------cCE-----------------------
Q 001039 1010 --RSIRMDRD---TVITGSDDWTARMWSISRGTCDAVLACHA------------GPV----------------------- 1049 (1179)
Q Consensus 1010 --~sl~~~~~---~l~sgs~dg~I~iwd~~~~~~~~~~~~h~------------~~V----------------------- 1049 (1179)
..+..+++ .++.++.+|.++++|..+|+.+....... .++
T Consensus 303 ~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~ 382 (668)
T 1kv9_A 303 TLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHN 382 (668)
T ss_dssp EEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSC
T ss_pred EEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccC
Confidence 23345664 68899999999999999999875433211 000
Q ss_pred -EEEEEecCCCEEEEEe------------------------------------CCCcEEEEEcCCCCcceEEEeecccCc
Q 001039 1050 -QCVEYSSSDRGIITGS------------------------------------SDGLLRFWENDDAGGIKCVKNVTIHSS 1092 (1179)
Q Consensus 1050 -~~l~~spdg~~l~sgs------------------------------------~Dg~I~iwd~~~~~~~~~~~~~~~h~~ 1092 (1179)
..++++|+...++... .+|.|..||..+++ .+.....+..
T Consensus 383 w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~---~~W~~~~~~~ 459 (668)
T 1kv9_A 383 WHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQK---AAWKVPYPTH 459 (668)
T ss_dssp SSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTE---EEEEEEESSS
T ss_pred CCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCc---EEEEccCCCC
Confidence 1267888777665421 24789999998854 3222222211
Q ss_pred -eEEEEecCCCEEEEEECCCcEEEEeCCCC
Q 001039 1093 -AILSINAGDHWLGIGAADNSMSLFHRPQE 1121 (1179)
Q Consensus 1093 -~i~sis~dg~~lasgs~Dg~I~iwd~~~~ 1121 (1179)
.-..+...+.++++|+.||.++.||..++
T Consensus 460 ~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG 489 (668)
T 1kv9_A 460 WNGGTLSTAGNLVFQGTAAGQMHAYSADKG 489 (668)
T ss_dssp CCCCEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred CcCceeEeCCCEEEEECCcccchhhhhhcC
Confidence 11344567889999999999999999843
No 232
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.89 E-value=5.8e-10 Score=129.33 Aligned_cols=256 Identities=11% Similarity=0.022 Sum_probs=139.8
Q ss_pred CCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEE--EEecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCc-E
Q 001039 850 DAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQ-V 926 (1179)
Q Consensus 850 d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~--~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~-V 926 (1179)
++..+++++.||.|+.||.. +.+.+..+.. ..+. .+..++..+++++.||.|+.||..+|+.+..+..+... +
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~--tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~ 83 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKR--TGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV 83 (369)
T ss_dssp CTTEEEEEETTSEEEEEETT--TCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHH
T ss_pred eCCEEEEEcCCCEEEEEECC--CCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccc
Confidence 57899999999999999976 4444455544 2332 23466777888889999999999999887766543211 1
Q ss_pred E-EEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecC
Q 001039 927 S-CVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGH 1005 (1179)
Q Consensus 927 ~-~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~ 1005 (1179)
. +.....++.+++|+.|+.+..||..+|+.+..+..+. ...++|++..+++++.|+.|+.||.++|+.+..+..+
T Consensus 84 ~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~ 159 (369)
T 2hz6_A 84 QASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYF 159 (369)
T ss_dssp TTCSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEE
T ss_pred ccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecc
Confidence 0 1111245678888999999999999999888775543 2345668888999999999999999999877665422
Q ss_pred CCCeEEEEEcC-----CEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEE-EEEecCCCEE----EEEeCCCcEEEEEc
Q 001039 1006 TKWIRSIRMDR-----DTVITGSDDWTARMWSISRGTCDAVLACHAGPVQC-VEYSSSDRGI----ITGSSDGLLRFWEN 1075 (1179)
Q Consensus 1006 ~~~I~sl~~~~-----~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~-l~~spdg~~l----~sgs~Dg~I~iwd~ 1075 (1179)
. .....+++ +.+++++.||.|+.||.++|+.+..... .+++.. ..++++|... +.+ ++.++.+|.
T Consensus 160 ~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~pv~~~~~~~~dg~~~v~~~~~~--~~~l~~ld~ 234 (369)
T 2hz6_A 160 D--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY-ASPVVAFYVWQREGLRKVMHINVA--VETLRYLTF 234 (369)
T ss_dssp E--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC-SSCEEEEEECTTSSCEEECCEEEE--HHHHHHHHH
T ss_pred c--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC-CCceEEEEEecCCceEeccceeec--ccceeeeeh
Confidence 1 12223333 5788899999999999999998887763 344443 3445555432 112 334455554
Q ss_pred CCCCcce-EEEeecccCceEEEEecCCCEEEEEECCCcEEEEeCC
Q 001039 1076 DDAGGIK-CVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRP 1119 (1179)
Q Consensus 1076 ~~~~~~~-~~~~~~~h~~~i~sis~dg~~lasgs~Dg~I~iwd~~ 1119 (1179)
.+++... .+...... ..+.+....+..+++++.||.++.++..
T Consensus 235 ~tG~~~~~~~W~~~~~-~~~~sp~~~~g~lyv~~~~G~l~al~~~ 278 (369)
T 2hz6_A 235 MSGEVGRITKWKYPFP-KETEAKSKLTPTLYVGKYSTSLYASPSM 278 (369)
T ss_dssp HHHHHHHHHTSCCCCC-CHHHHHHHSEEEECBEECSSCEECCEEE
T ss_pred hcCCcccceeeeeccC-ccccccccccceEEEecccCCEEecCcc
Confidence 4321000 00000000 0010111235677888889999888875
No 233
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.87 E-value=7.9e-10 Score=128.22 Aligned_cols=178 Identities=10% Similarity=0.007 Sum_probs=103.8
Q ss_pred CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCC-CeE-
Q 001039 933 SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTK-WIR- 1010 (1179)
Q Consensus 933 ~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~-~I~- 1010 (1179)
+++.+++++.||.|..||..+|+.+..+.. +.+.+..+..++..+++++.||.|+.||..+|+.+..+..+.. .+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 578899999999999999999999988765 4455555566777888888999999999999988776644321 110
Q ss_pred EEEE-cCCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecc
Q 001039 1011 SIRM-DRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTI 1089 (1179)
Q Consensus 1011 sl~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~ 1089 (1179)
+... .++.+++|+.|+.|+.||.++|+.+..+..+. ...++|++..+++++.|+.|+.||..+++....... ..
T Consensus 86 sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~ 160 (369)
T 2hz6_A 86 SPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATY-FD 160 (369)
T ss_dssp CSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEE-EE
T ss_pred CceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEec-cc
Confidence 1111 45578888899999999999999888776543 234567888999999999999999998654333321 11
Q ss_pred cCceEEEEecCC---CEEEEEECCCcEEEEeCC
Q 001039 1090 HSSAILSINAGD---HWLGIGAADNSMSLFHRP 1119 (1179)
Q Consensus 1090 h~~~i~sis~dg---~~lasgs~Dg~I~iwd~~ 1119 (1179)
... ..++.+. ..+++++.||.|+.||..
T Consensus 161 ~~~--~~~~~~~~~~~~v~~~~~dg~v~a~d~~ 191 (369)
T 2hz6_A 161 YAA--SLPEDDVDYKMSHFVSNGDGLVVTVDSE 191 (369)
T ss_dssp ECC--BCCCCCTTCCCCEEEEETSCEEEEECTT
T ss_pred ccC--ccccCCccccceEEEECCCCEEEEEECC
Confidence 111 1122221 567778999999999987
No 234
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.83 E-value=2.3e-06 Score=97.00 Aligned_cols=209 Identities=10% Similarity=-0.003 Sum_probs=134.6
Q ss_pred CC-CCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEE--EecCCCEEEEEeCCCcEEEEECCCCeEEEEeec----
Q 001039 849 ED-AGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLLEELKG---- 921 (1179)
Q Consensus 849 ~d-~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~---- 921 (1179)
++ +.+++++..++.|..||.. +.... .+. ....+.+ ++++|+++++. .+ .|.+||..+++.......
T Consensus 58 ~~~~~l~~~d~~~~~i~~~d~~--~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~ 131 (326)
T 2ghs_A 58 PASGTAWWFNILERELHELHLA--SGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDL 131 (326)
T ss_dssp TTTTEEEEEEGGGTEEEEEETT--TTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTC
T ss_pred CCCCEEEEEECCCCEEEEEECC--CCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCC
Confidence 55 5566777778999999976 22222 222 2334554 47888766654 44 499999988876433221
Q ss_pred CCCcEEEEEEe-CCCEEEEEEc------CCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEE-eCCCeEEEEeC
Q 001039 922 HDAQVSCVRML-SGERVLTASH------DGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAG-GRDAVANIWDI 993 (1179)
Q Consensus 922 h~~~V~~l~~s-~~~~l~sgs~------dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sg-s~dg~I~iwD~ 993 (1179)
....+.++++. ++..+++... .+.|..+| +++..... ........++|+++++.++.+ +.++.|.+||+
T Consensus 132 ~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~-~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~ 208 (326)
T 2ghs_A 132 PGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLF-ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPL 208 (326)
T ss_dssp TTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEE-EEESSEEEEEECTTSCEEEEEETTTCEEEEEEB
T ss_pred CCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEee-CCCcccCCeEEcCCCCEEEEEECCCCEEEEEEc
Confidence 12357888888 4554443332 24566666 55543322 223456789999999877555 45689999998
Q ss_pred C--CC-ce-----eEEeecCCCCeEEEEEc--CCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEe-cCCCEEE
Q 001039 994 R--AG-RQ-----MHKFLGHTKWIRSIRMD--RDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYS-SSDRGII 1062 (1179)
Q Consensus 994 ~--~~-~~-----~~~~~~~~~~I~sl~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s-pdg~~l~ 1062 (1179)
. ++ +. ...+.........++++ +++.++...++.|..||. +++....+..+...+++++|+ ++++.|+
T Consensus 209 ~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~ 287 (326)
T 2ghs_A 209 DARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLL 287 (326)
T ss_dssp CTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEE
T ss_pred ccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEE
Confidence 6 55 32 22222334556778885 446666666789999998 677777777777789999998 8888776
Q ss_pred EEeCC
Q 001039 1063 TGSSD 1067 (1179)
Q Consensus 1063 sgs~D 1067 (1179)
.++..
T Consensus 288 vt~~~ 292 (326)
T 2ghs_A 288 VTSAR 292 (326)
T ss_dssp EEEBC
T ss_pred EEecC
Confidence 65543
No 235
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.83 E-value=4.2e-07 Score=102.07 Aligned_cols=229 Identities=10% Similarity=0.037 Sum_probs=148.3
Q ss_pred ceEEEecccCceEEEEeecccceeccccccCCCC-EEEEEeCCCcEEEEcCCCCCceeEEEeccccccEE--EEecCCCE
Q 001039 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAG-FFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGK 895 (1179)
Q Consensus 819 ~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~-~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~--~~s~d~~~ 895 (1179)
.+..+..+.....+..|+ ++++ +++++..++.|..|+.. +. ...+..+...+. +++++|+.
T Consensus 36 ~~~~l~~~~~~~egp~~~------------~~g~~l~~~d~~~~~i~~~~~~--g~--~~~~~~~~~~~~gl~~d~dG~l 99 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWW------------EAQRTLVWSDLVGRRVLGWRED--GT--VDVLLDATAFTNGNAVDAQQRL 99 (305)
T ss_dssp CCEEEECCCSSEEEEEEE------------GGGTEEEEEETTTTEEEEEETT--SC--EEEEEESCSCEEEEEECTTSCE
T ss_pred ceEEEecCCcCccCCeEe------------CCCCEEEEEECCCCEEEEEeCC--CC--EEEEeCCCCccceeeECCCCCE
Confidence 345555566667788887 7787 66777788999999863 22 233333444444 45788886
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEeecC----CCcEEEEEEe-CCCEEEE----EEc-------------CCeEEEEeCCC
Q 001039 896 VVSGSDDQSVLVWDKQTSQLLEELKGH----DAQVSCVRML-SGERVLT----ASH-------------DGTVKMWDVRT 953 (1179)
Q Consensus 896 l~sgs~dg~I~iwd~~t~~~~~~~~~h----~~~V~~l~~s-~~~~l~s----gs~-------------dg~I~iwd~~~ 953 (1179)
+++...++.|.+|+.+ ++........ ...+..+++. +|..+++ |.. .+.|..||..+
T Consensus 100 ~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~ 178 (305)
T 3dr2_A 100 VHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG 178 (305)
T ss_dssp EEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS
T ss_pred EEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCC
Confidence 6665566889999986 6543222111 1345678888 5665554 321 35688888877
Q ss_pred CeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC------CeEEEEeCCCCcee--EEe-ecCCCCeEEEEEcCC-EEEEEe
Q 001039 954 DTCVATVGRCSSAVLCMEYDDSTGILAAGGRD------AVANIWDIRAGRQM--HKF-LGHTKWIRSIRMDRD-TVITGS 1023 (1179)
Q Consensus 954 ~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~d------g~I~iwD~~~~~~~--~~~-~~~~~~I~sl~~~~~-~l~sgs 1023 (1179)
++..... .......++|+|+++.++.+... +.|.+||+..+... ..+ .........++++++ .+.+++
T Consensus 179 g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~ 256 (305)
T 3dr2_A 179 SPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS 256 (305)
T ss_dssp CCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC
T ss_pred CcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec
Confidence 7654433 33456789999999988877665 78999998765411 111 112233455677533 355555
Q ss_pred CCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCc
Q 001039 1024 DDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGL 1069 (1179)
Q Consensus 1024 ~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~ 1069 (1179)
.+ .|.+||. +++....+..+. .+.+++|+++++.|+.++.++.
T Consensus 257 ~~-gv~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 257 GT-GVCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp SS-EEEEECT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEE
T ss_pred CC-cEEEECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeE
Confidence 44 4999997 577777776554 5889999999999988887653
No 236
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.80 E-value=2.7e-06 Score=96.47 Aligned_cols=213 Identities=10% Similarity=-0.005 Sum_probs=137.6
Q ss_pred EEecCCC-EEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEecc----
Q 001039 888 AINSDRG-KVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGR---- 962 (1179)
Q Consensus 888 ~~s~d~~-~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---- 962 (1179)
.++++++ .+++...++.|..||..+++.. .+. ....+.++++.++..++.++.+ .|.+||..+++.......
T Consensus 55 ~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~~~~~~~~~~~ 131 (326)
T 2ghs_A 55 TFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELESDL 131 (326)
T ss_dssp EEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSSTTC
T ss_pred eEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEECC-CEEEEECCCCcEEEEeeCCCCC
Confidence 4678754 5556667889999999887653 333 3467899999854555555544 599999988876443321
Q ss_pred CCCcEEEEEEcCCCCEEEEEeC------CCeEEEEeCCCCceeEEeecCCCCeEEEEEcCC--EE-EEEeCCCcEEEEEc
Q 001039 963 CSSAVLCMEYDDSTGILAAGGR------DAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD--TV-ITGSDDWTARMWSI 1033 (1179)
Q Consensus 963 ~~~~v~~l~~sp~~~~l~sgs~------dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~--~l-~sgs~dg~I~iwd~ 1033 (1179)
....+..++++++|+++++... .+.|..+| +++.. .+.........++|+++ .+ ++.+.++.|.+||+
T Consensus 132 ~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~ 208 (326)
T 2ghs_A 132 PGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPL 208 (326)
T ss_dssp TTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEB
T ss_pred CCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEc
Confidence 1246889999999997665442 25666666 45433 33233345678888644 45 44456789999998
Q ss_pred c--CC-ee-----eEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEE--e-cCCC
Q 001039 1034 S--RG-TC-----DAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSI--N-AGDH 1102 (1179)
Q Consensus 1034 ~--~~-~~-----~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~si--s-~dg~ 1102 (1179)
. ++ .. ...+........+++++++|++.++...++.|..||... +.+..+..+...+.++ + ++++
T Consensus 209 ~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g----~~~~~i~~~~~~~~~~af~g~d~~ 284 (326)
T 2ghs_A 209 DARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDG----NHIARYEVPGKQTTCPAFIGPDAS 284 (326)
T ss_dssp CTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTC----CEEEEEECSCSBEEEEEEESTTSC
T ss_pred ccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCC----CEEEEEECCCCCcEEEEEecCCCC
Confidence 6 55 31 222323345678899999999887776778899999842 3334444444445444 4 6777
Q ss_pred EEEEEECC
Q 001039 1103 WLGIGAAD 1110 (1179)
Q Consensus 1103 ~lasgs~D 1110 (1179)
.|++++..
T Consensus 285 ~L~vt~~~ 292 (326)
T 2ghs_A 285 RLLVTSAR 292 (326)
T ss_dssp EEEEEEBC
T ss_pred EEEEEecC
Confidence 66655543
No 237
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.77 E-value=6.2e-05 Score=96.13 Aligned_cols=356 Identities=10% Similarity=0.056 Sum_probs=211.1
Q ss_pred cceEEEEEccCCC-ceeeccC-ceEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEe--------cccCceEEEEeecc
Q 001039 769 RSWVQSMFSREAS-SRSHSFS-RVRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIR--------GHAGAITALHCVTK 838 (1179)
Q Consensus 769 ~~i~~~~fSpdg~-~las~~~-dI~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--------gH~~~V~~v~~s~~ 838 (1179)
..|.++.-.++|. .-+.+.. .+..||..++.. ..+. -....|+++...
T Consensus 66 n~I~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~f--------------------~~~~~~~~~~~~l~~~~i~~i~~d-- 123 (781)
T 3v9f_A 66 NELNEVYTDPVQPVIWIATQRAGLNAYNYETQSF--------------------SVYQYNPEDPQSLITNDVTHITSS-- 123 (781)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTTEE--------------------EEECCCTTCSSSCSCSCEEEEEEC--
T ss_pred cccceEEEcCCCCEEEEEeCCCCcceECCCCCeE--------------------EeeccccCCCCCcccCcceEEEec--
Confidence 4577788888888 5444444 488999776541 1110 012357777653
Q ss_pred cceeccccccC-CCCEEEEEeCCCcEEEEcCCCCCceeEEEecc------ccccEEEEecC-CCEEEEEeCCCcEEEEEC
Q 001039 839 REVWDLVGDRE-DAGFFISGSTDCLVKIWDPSLRGSELRATLKG------HTRTVRAINSD-RGKVVSGSDDQSVLVWDK 910 (1179)
Q Consensus 839 ~~~~~~~~~s~-d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~------h~~~v~~~s~d-~~~l~sgs~dg~I~iwd~ 910 (1179)
. +...|..|+.++.|..||.. ..... .+.. ....|.++..+ ...+..|+.++-+..||.
T Consensus 124 ----------~~~~g~lwi~t~~~gl~~~~~~--~~~~~-~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~ 190 (781)
T 3v9f_A 124 ----------VQAGKGLWVCTYYRGIEYLDIA--TGKFT-HYNKSTVPALPSEQTWTATEAEDGKLYIGHVEGGLSILSL 190 (781)
T ss_dssp ----------SSTTSEEEEEESSSCEEEEETT--TTEEE-EESTTTCTTCSCCCEEEEEEEETTEEEEEETTTEEEEEET
T ss_pred ----------CccCCCEEEEECCCCeeEEECC--CCeEE-eeccCcccCCCccceEEEEECCCCCEEEEecCCCeEEEcC
Confidence 3 03445567645558888865 22222 2211 12456676543 556777777766899998
Q ss_pred CCCeEEEEee-------cCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEec-------cCCCcEEEEEEcCCC
Q 001039 911 QTSQLLEELK-------GHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVG-------RCSSAVLCMEYDDST 976 (1179)
Q Consensus 911 ~t~~~~~~~~-------~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~-------~~~~~v~~l~~sp~~ 976 (1179)
.+++...... .....|.++.......+..|+.+ -+.+||..+++...... .....|.++..+++|
T Consensus 191 ~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g 269 (781)
T 3v9f_A 191 NDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDN 269 (781)
T ss_dssp TTTEEEEECC--------CCSSEEEEEECTTCCEEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTS
T ss_pred CCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCC
Confidence 8876543211 12356888877755667777766 68999987776443211 124579999998888
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeEEee--------------cCCCCeEEEEEcCC-EEEEEeCCCcEEEEEccCCeeeEE
Q 001039 977 GILAAGGRDAVANIWDIRAGRQMHKFL--------------GHTKWIRSIRMDRD-TVITGSDDWTARMWSISRGTCDAV 1041 (1179)
Q Consensus 977 ~~l~sgs~dg~I~iwD~~~~~~~~~~~--------------~~~~~I~sl~~~~~-~l~sgs~dg~I~iwd~~~~~~~~~ 1041 (1179)
. +..|+..+-|.++|..+++...... .....|.++..+.+ .+..|+.++-|..++..++.....
T Consensus 270 ~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~ 348 (781)
T 3v9f_A 270 K-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTW 348 (781)
T ss_dssp E-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEE
T ss_pred C-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceee
Confidence 6 4456665668889987765322111 12357888888654 677888788899999776543322
Q ss_pred ee---------cCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEe-ecccCceEEEEecC-CCEEEEEECC
Q 001039 1042 LA---------CHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKN-VTIHSSAILSINAG-DHWLGIGAAD 1110 (1179)
Q Consensus 1042 ~~---------~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~-~~~h~~~i~sis~d-g~~lasgs~D 1110 (1179)
.. .....|.+++..++|. |..|+.++-|..||..+.. ...+.. .......|.++..+ ...|..|+.+
T Consensus 349 ~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~-~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~ 426 (781)
T 3v9f_A 349 SYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRV-AIYNKENRELLSNSVLCSLKDSEGNLWFGTYL 426 (781)
T ss_dssp C----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEE-EECC-----CCCSBEEEEEECTTSCEEEEETT
T ss_pred ccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCe-EEEccCCCCCCCcceEEEEECCCCCEEEEecc
Confidence 11 1235699999888876 4556656668889876521 111100 01234567777543 3445667777
Q ss_pred CcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001039 1111 NSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATIN 1178 (1179)
Q Consensus 1111 g~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~tg 1178 (1179)
+.+..+|..+++.. ...........|.++...++|.+.+ |+. +-|..||..++
T Consensus 427 ~Gl~~~~~~~~~~~-------------~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~ 479 (781)
T 3v9f_A 427 GNISYYNTRLKKFQ-------------IIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASK 479 (781)
T ss_dssp EEEEEECSSSCEEE-------------ECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSS
T ss_pred CCEEEEcCCCCcEE-------------EeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCC
Confidence 78999987643221 1110012345789999988887554 444 45888887764
No 238
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.75 E-value=2.7e-06 Score=104.15 Aligned_cols=226 Identities=12% Similarity=0.111 Sum_probs=149.2
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeecCCC----cEEE-EEEeCCCEEEEEEc------CCeEEEEeCCCCeEEEEe
Q 001039 892 DRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDA----QVSC-VRMLSGERVLTASH------DGTVKMWDVRTDTCVATV 960 (1179)
Q Consensus 892 d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~----~V~~-l~~s~~~~l~sgs~------dg~I~iwd~~~~~~~~~~ 960 (1179)
++..++.++.|+.+..+|..+|+.+........ .+.+ ... .++.+++++. +|.|..+|.++|+.+..+
T Consensus 114 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 114 GAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV-AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred ECCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEE-ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 567888999999999999999999987653221 1211 111 2456666665 799999999999998876
Q ss_pred ccCCCc--------------------------------------EEEEEEcCCCCEEEEEeCC----------------C
Q 001039 961 GRCSSA--------------------------------------VLCMEYDDSTGILAAGGRD----------------A 986 (1179)
Q Consensus 961 ~~~~~~--------------------------------------v~~l~~sp~~~~l~sgs~d----------------g 986 (1179)
...... ...++++++...+..++.+ +
T Consensus 193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~ 272 (571)
T 2ad6_A 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM 272 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence 432110 0235677776777776542 3
Q ss_pred eEEEEeCCCCceeEEeecC--C--------CCeE-EEEEcCC---EEEEEeCCCcEEEEEccCCeeeEEeecCC------
Q 001039 987 VANIWDIRAGRQMHKFLGH--T--------KWIR-SIRMDRD---TVITGSDDWTARMWSISRGTCDAVLACHA------ 1046 (1179)
Q Consensus 987 ~I~iwD~~~~~~~~~~~~~--~--------~~I~-sl~~~~~---~l~sgs~dg~I~iwd~~~~~~~~~~~~h~------ 1046 (1179)
.|..+|.++|+.+..++.. . .++. ....+++ .++.++.+|.++++|..+|+.+.......
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~ 352 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFK 352 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccc
Confidence 6999999999998877532 1 1221 1223453 57788899999999999999887764221
Q ss_pred -------cCE--------------------------EEEEEecCCCEEEEEe----------------------------
Q 001039 1047 -------GPV--------------------------QCVEYSSSDRGIITGS---------------------------- 1065 (1179)
Q Consensus 1047 -------~~V--------------------------~~l~~spdg~~l~sgs---------------------------- 1065 (1179)
.++ ..++++|+...+++.+
T Consensus 353 ~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~ 432 (571)
T 2ad6_A 353 KVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMY 432 (571)
T ss_dssp EECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred cccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceec
Confidence 111 2467888887777654
Q ss_pred ---------CCCcEEEEEcCCCCcceEEEeecccCceEEEEecCCCEEEEEECCCcEEEEeCCC
Q 001039 1066 ---------SDGLLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRPQ 1120 (1179)
Q Consensus 1066 ---------~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~lasgs~Dg~I~iwd~~~ 1120 (1179)
.+|.|..||..+++.......- ....-..+...+..+++++.||.|+.||..+
T Consensus 433 ~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~--~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~t 494 (571)
T 2ad6_A 433 PGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK--FAAWGGTLYTKGGLVWYATLDGYLKALDNKD 494 (571)
T ss_dssp ECTTSTTSCCCEEEEEECTTTCCEEEEEEES--SCCCSBCEEETTTEEEEECTTSEEEEEETTT
T ss_pred cCccccCCCCCCeEEEEECCCCCEEEEecCC--CCccceeEEECCCEEEEEcCCCeEEEEECCC
Confidence 3478999999885433332211 1111112234567788899999999999983
No 239
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.73 E-value=4e-07 Score=104.45 Aligned_cols=252 Identities=10% Similarity=-0.030 Sum_probs=163.0
Q ss_pred ceEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceeccccccCCCCEEEEEe----------
Q 001039 789 RVRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGS---------- 858 (1179)
Q Consensus 789 dI~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs---------- 858 (1179)
.|.+.|.++++ .+.++..-..+ .+.++ ||+++++.+.
T Consensus 47 ~vsvID~~t~~-------------------v~~~i~vG~~P--~i~~s------------pDg~~lyVan~~~~r~~~G~ 93 (368)
T 1mda_H 47 ENWVSCAGCGV-------------------TLGHSLGAFLS--LAVAG------------HSGSDFALASTSFARSAKGK 93 (368)
T ss_dssp EEEEEETTTTE-------------------EEEEEEECTTC--EEEEC------------TTSSCEEEEEEEETTTTSSS
T ss_pred eEEEEECCCCe-------------------EEEEEeCCCCC--ceEEC------------CCCCEEEEEcccccccccCC
Confidence 36788988777 56666554556 68887 8999988886
Q ss_pred CCCcEEEEcCCCCCceeEEEecc---------ccccEEEEecCCCEEEEEeC--CCcEEE--EECCCCeEEEEeecCCCc
Q 001039 859 TDCLVKIWDPSLRGSELRATLKG---------HTRTVRAINSDRGKVVSGSD--DQSVLV--WDKQTSQLLEELKGHDAQ 925 (1179)
Q Consensus 859 ~Dg~I~lWd~~~~~~~~~~~l~~---------h~~~v~~~s~d~~~l~sgs~--dg~I~i--wd~~t~~~~~~~~~h~~~ 925 (1179)
.+++|.+||.. +.+....+.. +...-..++|||++++++.. +..+.+ +|..+ +.++.....
T Consensus 94 ~~~~VsviD~~--T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~- 167 (368)
T 1mda_H 94 RTDYVEVFDPV--TFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC- 167 (368)
T ss_dssp EEEEEEEECTT--TCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC-
T ss_pred CCCEEEEEECC--CCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc-
Confidence 37889999976 4555555532 23344578999999999875 467888 99877 455542211
Q ss_pred EEEEEEeCCCEEEEEEcCCeEEEEeCCC-----CeEEEE----eccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 001039 926 VSCVRMLSGERVLTASHDGTVKMWDVRT-----DTCVAT----VGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAG 996 (1179)
Q Consensus 926 V~~l~~s~~~~l~sgs~dg~I~iwd~~~-----~~~~~~----~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~ 996 (1179)
..+.......+++.+.||.+.+.|..+ ++.... +.....+. . ++++..++..+. +.+.+.|..+.
T Consensus 168 -~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~ 241 (368)
T 1mda_H 168 -FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAA 241 (368)
T ss_dssp -CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSS
T ss_pred -eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCC
Confidence 112222345566777899998899887 443211 11112333 3 666666666666 99999998654
Q ss_pred c--eeEEeec------------CCCCeEEEEEcCCEEEEEeC---------CCcEEEEEccCCeeeEEeecCCcCEEEEE
Q 001039 997 R--QMHKFLG------------HTKWIRSIRMDRDTVITGSD---------DWTARMWSISRGTCDAVLACHAGPVQCVE 1053 (1179)
Q Consensus 997 ~--~~~~~~~------------~~~~I~sl~~~~~~l~sgs~---------dg~I~iwd~~~~~~~~~~~~h~~~V~~l~ 1053 (1179)
. .+..+.. .......+..+++.++++.. ++.+.++|+.+++.+..+.... ...+++
T Consensus 242 ~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~ 320 (368)
T 1mda_H 242 GATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAII 320 (368)
T ss_dssp CCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEE
T ss_pred cceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEE
Confidence 2 2222211 11111233345566665432 2356699999999888876433 688999
Q ss_pred EecCCC-EEEEEe-CCCcEEEEEcCCCCcceEEEeecc
Q 001039 1054 YSSSDR-GIITGS-SDGLLRFWENDDAGGIKCVKNVTI 1089 (1179)
Q Consensus 1054 ~spdg~-~l~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~ 1089 (1179)
|+|||+ .+++.. .++.|.++|+.+ .+.+..+..
T Consensus 321 ~s~Dg~~l~va~~~~~~~VsVID~~t---~kvv~~I~v 355 (368)
T 1mda_H 321 AAQDGASDNYANSAGTEVLDIYDAAS---DQDQSSVEL 355 (368)
T ss_dssp ECCSSSCEEEEEETTTTEEEEEESSS---CEEEEECCC
T ss_pred ECCCCCEEEEEccCCCCeEEEEECCC---CcEEEEEEC
Confidence 999998 456666 599999999999 566666553
No 240
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.73 E-value=0.0002 Score=91.36 Aligned_cols=319 Identities=11% Similarity=0.087 Sum_probs=195.7
Q ss_pred CceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEec-----c---ccccEEEEecC---CCEE
Q 001039 828 GAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLK-----G---HTRTVRAINSD---RGKV 896 (1179)
Q Consensus 828 ~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~-----~---h~~~v~~~s~d---~~~l 896 (1179)
..|.++... .+|..|..|+.++-+..||... ... ..+. . ....|.++..+ ...+
T Consensus 66 n~I~~i~~d------------~~g~~lWigt~~~Gl~~~d~~~--~~f-~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~l 130 (781)
T 3v9f_A 66 NELNEVYTD------------PVQPVIWIATQRAGLNAYNYET--QSF-SVYQYNPEDPQSLITNDVTHITSSVQAGKGL 130 (781)
T ss_dssp SCEEEEEEC------------SSSSEEEEEESSSCEEEEETTT--TEE-EEECCCTTCSSSCSCSCEEEEEECSSTTSEE
T ss_pred cccceEEEc------------CCCCEEEEEeCCCCcceECCCC--CeE-EeeccccCCCCCcccCcceEEEecCccCCCE
Confidence 357887653 5566466777775699999652 222 2221 0 12357777544 3667
Q ss_pred EEEeCCCcEEEEECCCCeEEEEee-----cCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEec-------cCC
Q 001039 897 VSGSDDQSVLVWDKQTSQLLEELK-----GHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVG-------RCS 964 (1179)
Q Consensus 897 ~sgs~dg~I~iwd~~t~~~~~~~~-----~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~-------~~~ 964 (1179)
..++.++.+..+|..+++...... .....|.++....+..+..|+.++-+..||..+++...... ...
T Consensus 131 wi~t~~~gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~ 210 (781)
T 3v9f_A 131 WVCTYYRGIEYLDIATGKFTHYNKSTVPALPSEQTWTATEAEDGKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPG 210 (781)
T ss_dssp EEEESSSCEEEEETTTTEEEEESTTTCTTCSCCCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEECC--------CC
T ss_pred EEEECCCCeeEEECCCCeEEeeccCcccCCCccceEEEEECCCCCEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCC
Confidence 777755668899988776543311 12345788777656677788887679999988876543211 123
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee-------cCCCCeEEEEEcCC-EEEEEeCCCcEEEEEccCC
Q 001039 965 SAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFL-------GHTKWIRSIRMDRD-TVITGSDDWTARMWSISRG 1036 (1179)
Q Consensus 965 ~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~-------~~~~~I~sl~~~~~-~l~sgs~dg~I~iwd~~~~ 1036 (1179)
..|.++..+++|.+.+ |+.+ .+.+||..+++...... .....|.++..+.+ .+..|+..+-|.++|..++
T Consensus 211 ~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~ 288 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWI-GTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATELNGIMILDLQQN 288 (781)
T ss_dssp SSEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEESSSCEEEEETTCC
T ss_pred CceeEEEEcCCCCEEE-EeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCCCCeEEECCCCC
Confidence 5689999988887554 4555 68999987765432211 12456888888644 7788887677899998776
Q ss_pred eeeEEee--------------cCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEee-------cccCceEE
Q 001039 1037 TCDAVLA--------------CHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNV-------TIHSSAIL 1095 (1179)
Q Consensus 1037 ~~~~~~~--------------~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~-------~~h~~~i~ 1095 (1179)
....... .....|.++..+++|. |..|+.++-|..++..+.. ...+... ......|.
T Consensus 289 ~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~v~ 366 (781)
T 3v9f_A 289 QFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPT-FHTWSYSPTQMNESSLSNKVVS 366 (781)
T ss_dssp ---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCS-CEEEC----CCCSSCCSSSCEE
T ss_pred eeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCc-ceeeccCccccccCCCCCcceE
Confidence 5332211 1345799999998886 5567766678899877632 2222110 11234577
Q ss_pred EEecCC-CEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001039 1096 SINAGD-HWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWE 1174 (1179)
Q Consensus 1096 sis~dg-~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWd 1174 (1179)
++..+. ..|..|+.++-|..||..+.....+. .........|.+++..++|.+.+ |+.++-+..++
T Consensus 367 ~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~------------~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~ 433 (781)
T 3v9f_A 367 SVCDDGQGKLWIGTDGGGINVFENGKRVAIYNK------------ENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYN 433 (781)
T ss_dssp EEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----------------CCCSBEEEEEECTTSCEEE-EETTEEEEEEC
T ss_pred EEEEcCCCCEEEEeCCCcEEEEECCCCeEEEcc------------CCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEc
Confidence 775442 45667777777999997643221110 00012346799999988887555 66666688888
Q ss_pred CCCC
Q 001039 1175 ATIN 1178 (1179)
Q Consensus 1175 v~tg 1178 (1179)
..++
T Consensus 434 ~~~~ 437 (781)
T 3v9f_A 434 TRLK 437 (781)
T ss_dssp SSSC
T ss_pred CCCC
Confidence 7654
No 241
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.73 E-value=6.1e-07 Score=102.62 Aligned_cols=232 Identities=9% Similarity=-0.003 Sum_probs=149.6
Q ss_pred CceEEEEeecccceeccccccCCCCEEEEEe--CCCcEEEEcCCCCCceeEEEe-------ccccccEEE--EecCCCEE
Q 001039 828 GAITALHCVTKREVWDLVGDREDAGFFISGS--TDCLVKIWDPSLRGSELRATL-------KGHTRTVRA--INSDRGKV 896 (1179)
Q Consensus 828 ~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs--~Dg~I~lWd~~~~~~~~~~~l-------~~h~~~v~~--~s~d~~~l 896 (1179)
.....++++ ++|+++++.. .++.++||.+. . ..+ ..+ .+|-..+.. ++++++..
T Consensus 17 ~~p~~va~~------------~~g~~~v~~~~~~~~~~~l~~~~-~-g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~ 81 (343)
T 2qe8_A 17 LAPGNITLT------------PDGRLFLSLHQFYQPEMQVAELT-Q-DGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVW 81 (343)
T ss_dssp SCEEEEEEC------------TTSCEEEEECGGGCCSCSEEEEE-T-TEE-EESCCCCSSCCCCCSCEEEEEECSSSEEE
T ss_pred CCcceEEEC------------CCCCEEEEeCCCCCCceEEEEEC-C-CCe-ecCCCcccCcccceeEeeEEEEcCCCcEE
Confidence 678889887 8899988864 23436666654 2 222 222 123345554 46776655
Q ss_pred EEEeC-----CCcEEEEECCCCeEEEEeecC------CCcEEEEEEe-CCCEE-EEEE---cCCeEEEEeCCCCeEEEEe
Q 001039 897 VSGSD-----DQSVLVWDKQTSQLLEELKGH------DAQVSCVRML-SGERV-LTAS---HDGTVKMWDVRTDTCVATV 960 (1179)
Q Consensus 897 ~sgs~-----dg~I~iwd~~t~~~~~~~~~h------~~~V~~l~~s-~~~~l-~sgs---~dg~I~iwd~~~~~~~~~~ 960 (1179)
++-.. ++.|.+||..+++.+..+... ......+++. ++..+ ++.. .++.|.+||..+++..+.+
T Consensus 82 v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~ 161 (343)
T 2qe8_A 82 MLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVL 161 (343)
T ss_dssp EEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEEC
T ss_pred EEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEe
Confidence 54433 578999999999987776532 2346788888 44454 4444 6789999999988876665
Q ss_pred ccC-----------------------------CCcEEEEEEcCCCCEEEEEeCCC-eEEEEeCC---CCc-----eeE--
Q 001039 961 GRC-----------------------------SSAVLCMEYDDSTGILAAGGRDA-VANIWDIR---AGR-----QMH-- 1000 (1179)
Q Consensus 961 ~~~-----------------------------~~~v~~l~~sp~~~~l~sgs~dg-~I~iwD~~---~~~-----~~~-- 1000 (1179)
..| ...+..++++|+++.++.+..++ .+..++.. .+. ...
T Consensus 162 ~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
T 2qe8_A 162 QGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKI 241 (343)
T ss_dssp TTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTC
T ss_pred cCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcce
Confidence 331 12368899999999888887666 55555532 111 000
Q ss_pred EeecCCCCeEEEEEc--CCEEEEEeCCCcEEEEEccCCeeeEEeec-CCcCEEEEEEecCCCEEEEEeCCCcEEEEE
Q 001039 1001 KFLGHTKWIRSIRMD--RDTVITGSDDWTARMWSISRGTCDAVLAC-HAGPVQCVEYSSSDRGIITGSSDGLLRFWE 1074 (1179)
Q Consensus 1001 ~~~~~~~~I~sl~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd 1074 (1179)
...++......++++ +.++++...++.|.+||..+++....... +....+++++.++|+++++.+..+.+.+|.
T Consensus 242 ~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 242 ERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp EEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred EecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccccccc
Confidence 111333345567775 45788888889999999856764433332 245689999999998888877665554443
No 242
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.72 E-value=4.9e-06 Score=95.95 Aligned_cols=218 Identities=7% Similarity=0.049 Sum_probs=144.1
Q ss_pred CCEE-EEEEcCCeEEEEeCCCC----eEEEEec-------cCCCcEEEEEEcCCCCEEEEEeCC------CeEEEEeCCC
Q 001039 934 GERV-LTASHDGTVKMWDVRTD----TCVATVG-------RCSSAVLCMEYDDSTGILAAGGRD------AVANIWDIRA 995 (1179)
Q Consensus 934 ~~~l-~sgs~dg~I~iwd~~~~----~~~~~~~-------~~~~~v~~l~~sp~~~~l~sgs~d------g~I~iwD~~~ 995 (1179)
.+++ +.|..+++|.++|+.+. +..+++. .....-..+..+|+| +++++..+ |.|.++|..+
T Consensus 95 r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T 173 (462)
T 2ece_A 95 RRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYS 173 (462)
T ss_dssp SCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTT
T ss_pred CCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCC
Confidence 4454 45667899999999766 6666663 122345678889999 66665555 7899999999
Q ss_pred CceeEEeecCCC---CeEEEEE--cCCEEEEEe-------------------CCCcEEEEEccCCeeeEEeecC-C-cCE
Q 001039 996 GRQMHKFLGHTK---WIRSIRM--DRDTVITGS-------------------DDWTARMWSISRGTCDAVLACH-A-GPV 1049 (1179)
Q Consensus 996 ~~~~~~~~~~~~---~I~sl~~--~~~~l~sgs-------------------~dg~I~iwd~~~~~~~~~~~~h-~-~~V 1049 (1179)
++.+.++..... .-..+.| +.+.+++.. .+.+|.+||+.+++.+.++... . ...
T Consensus 174 ~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P 253 (462)
T 2ece_A 174 FEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMA 253 (462)
T ss_dssp CCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEE
T ss_pred CeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCcc
Confidence 999998863322 2334555 455677664 3689999999999888887743 2 234
Q ss_pred EEEEE--ecCCCEEEEEe------CCCcEEEEEcCCCCcceEEEee--c------------------ccCceEEEEecCC
Q 001039 1050 QCVEY--SSSDRGIITGS------SDGLLRFWENDDAGGIKCVKNV--T------------------IHSSAILSINAGD 1101 (1179)
Q Consensus 1050 ~~l~~--spdg~~l~sgs------~Dg~I~iwd~~~~~~~~~~~~~--~------------------~h~~~i~sis~dg 1101 (1179)
..+.| +|+++++.+++ .+++|.+|..+. +.......+ . +....-..+++||
T Consensus 254 ~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~-g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DG 332 (462)
T 2ece_A 254 LELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED-GKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDD 332 (462)
T ss_dssp EEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET-TEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTS
T ss_pred ceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC-CceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCC
Confidence 55655 99999988777 466888877665 323333321 0 0112235679999
Q ss_pred CEEEEEEC-CCcEEEEeCCCCCcCcccCCCCccccceeeeec-CC-------C------cccEEEEEEcCCCCEEEEEe
Q 001039 1102 HWLGIGAA-DNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTP-QK-------T------VAVVRCIASDLERKRICSGG 1165 (1179)
Q Consensus 1102 ~~lasgs~-Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~-~~-------h------~~~V~~v~fspdg~~Lasgs 1165 (1179)
++|.++.. .+.|.+||+.... +. ++.... .+ | .+.-..+++||||++|+++.
T Consensus 333 rfLYVSnrg~d~VavfdV~d~~------~~------~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 333 KFLYLSLWGIGEVRQYDISNPF------KP------VLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CEEEEEETTTTEEEEEECSSTT------SC------EEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CEEEEEeCCCCEEEEEEecCCC------Cc------EEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 99988875 6899999986221 00 111111 01 1 11357899999999999988
No 243
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.68 E-value=5.3e-06 Score=101.48 Aligned_cols=265 Identities=12% Similarity=0.059 Sum_probs=164.4
Q ss_pred CCEEEEEeC-CCcEEEEcC-CCCCceeEEEeccccc-------------cEEEEecCCCE----EEEEeCCCcEEEEECC
Q 001039 851 AGFFISGST-DCLVKIWDP-SLRGSELRATLKGHTR-------------TVRAINSDRGK----VVSGSDDQSVLVWDKQ 911 (1179)
Q Consensus 851 ~~~Lasgs~-Dg~I~lWd~-~~~~~~~~~~l~~h~~-------------~v~~~s~d~~~----l~sgs~dg~I~iwd~~ 911 (1179)
+..++.++. ++.|.-+|. . +.+.+........ .-.++++.+.. ++.++.|+.+..+|..
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~--tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~ 139 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDD--PGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAE 139 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTC--TTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETT
T ss_pred CCEEEEEeCCCCEEEEEeCCC--CCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECC
Confidence 445555555 677777776 4 2222232221110 00134334444 8889999999999999
Q ss_pred CCeEEEEeecCCC----cEEE-EEEeCCCEEEEEE------cCCeEEEEeCCCCeEEEEeccCCCc--------------
Q 001039 912 TSQLLEELKGHDA----QVSC-VRMLSGERVLTAS------HDGTVKMWDVRTDTCVATVGRCSSA-------------- 966 (1179)
Q Consensus 912 t~~~~~~~~~h~~----~V~~-l~~s~~~~l~sgs------~dg~I~iwd~~~~~~~~~~~~~~~~-------------- 966 (1179)
+|+.+........ .+.+ .... ++.+++++ .+|.|..+|.++|+.+..+......
T Consensus 140 TG~~~W~~~~~~~~~~~~~~ssP~v~-~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~ 218 (599)
T 1w6s_A 140 TGETVWKVENSDIKVGSTLTIAPYVV-KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNP 218 (599)
T ss_dssp TCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred CCCEEEeecCCCCCccceeecCCEEE-CCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccc
Confidence 9999887654321 1211 1122 45666665 3899999999999998776432211
Q ss_pred -----------------------E-EEEEEcCCCCEEEEEeCC----------------CeEEEEeCCCCceeEEeecCC
Q 001039 967 -----------------------V-LCMEYDDSTGILAAGGRD----------------AVANIWDIRAGRQMHKFLGHT 1006 (1179)
Q Consensus 967 -----------------------v-~~l~~sp~~~~l~sgs~d----------------g~I~iwD~~~~~~~~~~~~~~ 1006 (1179)
+ ..+++++....++.++.+ +.|.-+|.++|+.+..++...
T Consensus 219 ~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~ 298 (599)
T 1w6s_A 219 HYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTP 298 (599)
T ss_dssp GGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESST
T ss_pred cccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCC
Confidence 0 135677777888887765 389999999999987776432
Q ss_pred C----------CeE-EEE-EcC---CEEEEEeCCCcEEEEEccCCeeeEEeecCC-------------cCE---------
Q 001039 1007 K----------WIR-SIR-MDR---DTVITGSDDWTARMWSISRGTCDAVLACHA-------------GPV--------- 1049 (1179)
Q Consensus 1007 ~----------~I~-sl~-~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~-------------~~V--------- 1049 (1179)
. ++. .+. .++ ..++.++.+|.++++|.++|+.+....... .++
T Consensus 299 ~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~ 378 (599)
T 1w6s_A 299 HDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRM 378 (599)
T ss_dssp TCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCT
T ss_pred CccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCC
Confidence 1 121 111 245 367778999999999999999887654211 111
Q ss_pred -----------------EEEEEecCCCEEEEEe---------------------------------------CCCcEEEE
Q 001039 1050 -----------------QCVEYSSSDRGIITGS---------------------------------------SDGLLRFW 1073 (1179)
Q Consensus 1050 -----------------~~l~~spdg~~l~sgs---------------------------------------~Dg~I~iw 1073 (1179)
..++++|+.+.+++.. .+|.+..|
T Consensus 379 ~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~ 458 (599)
T 1w6s_A 379 DHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAY 458 (599)
T ss_dssp TCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEE
T ss_pred CCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEE
Confidence 2456777766665432 34678888
Q ss_pred EcCCCCcceEEEeecccCceEEEEecCCCEEEEEECCCcEEEEeCCC
Q 001039 1074 ENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRPQ 1120 (1179)
Q Consensus 1074 d~~~~~~~~~~~~~~~h~~~i~sis~dg~~lasgs~Dg~I~iwd~~~ 1120 (1179)
|+.+++....... +....--.+...+.+++.|+.||.++.||..+
T Consensus 459 D~~tG~~~W~~~~--~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~t 503 (599)
T 1w6s_A 459 NAITGDYKWEKME--RFAVWGGTMATAGDLVFYGTLDGYLKARDSDT 503 (599)
T ss_dssp CTTTCCEEEEEEE--SSCCCSBCEEETTTEEEEECTTSEEEEEETTT
T ss_pred ECCCCCEEeEecC--CCCccCcceEecCCEEEEECCCCeEEEEECCC
Confidence 8888543222221 11111012345677888899999999999983
No 244
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.64 E-value=1.7e-06 Score=108.01 Aligned_cols=186 Identities=13% Similarity=0.180 Sum_probs=127.0
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCc----------E-EEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEe
Q 001039 892 DRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQ----------V-SCVRMLSGERVLTASHDGTVKMWDVRTDTCVATV 960 (1179)
Q Consensus 892 d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~----------V-~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~ 960 (1179)
.+..+++++.++.|..+|..+|+.+.++...... + ..+.+ .++.+++++.|+.|..+|..+|+.+...
T Consensus 65 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 65 HDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL-WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp ETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE-EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred ECCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE-ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 3667788888899999999999999988643221 0 11222 3567888999999999999999998877
Q ss_pred ccCC----CcEEE-EEEcCCCCEEEEEeC------CCeEEEEeCCCCceeEEeecCC---C-------------------
Q 001039 961 GRCS----SAVLC-MEYDDSTGILAAGGR------DAVANIWDIRAGRQMHKFLGHT---K------------------- 1007 (1179)
Q Consensus 961 ~~~~----~~v~~-l~~sp~~~~l~sgs~------dg~I~iwD~~~~~~~~~~~~~~---~------------------- 1007 (1179)
.... ..+.+ ..+ .+..++++.. +|.|..+|.++|+.+.++.... .
T Consensus 144 ~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 221 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ 221 (668)
T ss_dssp ECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred ccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccc
Confidence 5421 11111 011 1334555543 5899999999999988775311 0
Q ss_pred ---------CeEEEEEc--CCEEEEEeCCC-------------------cEEEEEccCCeeeEEeec--CC-------cC
Q 001039 1008 ---------WIRSIRMD--RDTVITGSDDW-------------------TARMWSISRGTCDAVLAC--HA-------GP 1048 (1179)
Q Consensus 1008 ---------~I~sl~~~--~~~l~sgs~dg-------------------~I~iwd~~~~~~~~~~~~--h~-------~~ 1048 (1179)
....++++ .+.++.++.++ .|..+|.++|+.+..++. |. .+
T Consensus 222 ~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~ 301 (668)
T 1kv9_A 222 YWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQ 301 (668)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCC
Confidence 01134554 45788887766 399999999999888764 32 23
Q ss_pred EEEEEEecCCC---EEEEEeCCCcEEEEEcCCCCc
Q 001039 1049 VQCVEYSSSDR---GIITGSSDGLLRFWENDDAGG 1080 (1179)
Q Consensus 1049 V~~l~~spdg~---~l~sgs~Dg~I~iwd~~~~~~ 1080 (1179)
.....+..+|+ .++.++.+|.++++|..+++.
T Consensus 302 ~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 336 (668)
T 1kv9_A 302 ITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL 336 (668)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred cEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE
Confidence 33334445675 688999999999999998653
No 245
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.59 E-value=2.6e-05 Score=95.55 Aligned_cols=226 Identities=14% Similarity=0.084 Sum_probs=146.1
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeecCCC----cEE-EEEEeCC----C-EEEEEEc------CCeEEEEeCCCCe
Q 001039 892 DRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDA----QVS-CVRMLSG----E-RVLTASH------DGTVKMWDVRTDT 955 (1179)
Q Consensus 892 d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~----~V~-~l~~s~~----~-~l~sgs~------dg~I~iwd~~~~~ 955 (1179)
.+..++.++.|+.+..+|..+|+.+........ .+. .....++ . .+++++. +|.|..+|..+|+
T Consensus 116 ~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~ 195 (582)
T 1flg_A 116 YGDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGE 195 (582)
T ss_dssp ETTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCC
T ss_pred ECCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCC
Confidence 567888899999999999999999988764321 111 1111222 2 5666653 7899999999999
Q ss_pred EEEEeccCCCcE-----------------------------------------EEEEEcCCCCEEEEEeC----------
Q 001039 956 CVATVGRCSSAV-----------------------------------------LCMEYDDSTGILAAGGR---------- 984 (1179)
Q Consensus 956 ~~~~~~~~~~~v-----------------------------------------~~l~~sp~~~~l~sgs~---------- 984 (1179)
.+.........+ ..++++++...++.+..
T Consensus 196 ~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r 275 (582)
T 1flg_A 196 EIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWAR 275 (582)
T ss_dssp EEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGG
T ss_pred EEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCccc
Confidence 887653321100 13567777777777663
Q ss_pred ----------C----CeEEEEeCCCCceeEEeec--CC--------CCeEEEE---EcCC---EEEEEeCCCcEEEEEcc
Q 001039 985 ----------D----AVANIWDIRAGRQMHKFLG--HT--------KWIRSIR---MDRD---TVITGSDDWTARMWSIS 1034 (1179)
Q Consensus 985 ----------d----g~I~iwD~~~~~~~~~~~~--~~--------~~I~sl~---~~~~---~l~sgs~dg~I~iwd~~ 1034 (1179)
| +.|.-+|.++|+.+..++. |. .++. +. .+++ .++.++.+|.++++|..
T Consensus 276 ~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~ 354 (582)
T 1flg_A 276 TAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRS 354 (582)
T ss_dssp SCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETT
T ss_pred ccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECC
Confidence 2 5899999999999887753 22 1222 22 2443 78889999999999999
Q ss_pred CCeeeEEeecCCc--CE-------------------------------------------EEEEEecCCCEEEEEe----
Q 001039 1035 RGTCDAVLACHAG--PV-------------------------------------------QCVEYSSSDRGIITGS---- 1065 (1179)
Q Consensus 1035 ~~~~~~~~~~h~~--~V-------------------------------------------~~l~~spdg~~l~sgs---- 1065 (1179)
+|+.+........ .. ..++++|+...+++..
T Consensus 355 tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~ 434 (582)
T 1flg_A 355 NGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWK 434 (582)
T ss_dssp TCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEE
T ss_pred CCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcc
Confidence 9998876553210 00 1345666655554432
Q ss_pred -----------------------------CCCcEEEEEcCCCCcceEEEeecccCceEEEEecCCCEEEEEECCCcEEEE
Q 001039 1066 -----------------------------SDGLLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLF 1116 (1179)
Q Consensus 1066 -----------------------------~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~lasgs~Dg~I~iw 1116 (1179)
.+|.|..||..+++........ ....-..+...+.++++|+.||.++.|
T Consensus 435 ~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~--~~~~~g~~~tagglvf~g~~dg~l~A~ 512 (582)
T 1flg_A 435 EDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH--LPLWAGVLATAGNLVFTGTGDGYFKAF 512 (582)
T ss_dssp EEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES--SCCCSCCEEETTTEEEEECTTSEEEEE
T ss_pred eeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCC--CCCcccceEeCCCEEEEECCCCcEEEE
Confidence 2578999999885533322211 111111223457788889999999999
Q ss_pred eCCC
Q 001039 1117 HRPQ 1120 (1179)
Q Consensus 1117 d~~~ 1120 (1179)
|..+
T Consensus 513 D~~t 516 (582)
T 1flg_A 513 DAKS 516 (582)
T ss_dssp ETTT
T ss_pred ECCC
Confidence 9983
No 246
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.58 E-value=1.8e-05 Score=91.16 Aligned_cols=218 Identities=12% Similarity=0.160 Sum_probs=148.3
Q ss_pred cCCCEEEE-EeCCCcEEEEECCCC----eEEEEee-------cCCCcEEEEEEeCCCEEEEEEcC------CeEEEEeCC
Q 001039 891 SDRGKVVS-GSDDQSVLVWDKQTS----QLLEELK-------GHDAQVSCVRMLSGERVLTASHD------GTVKMWDVR 952 (1179)
Q Consensus 891 ~d~~~l~s-gs~dg~I~iwd~~t~----~~~~~~~-------~h~~~V~~l~~s~~~~l~sgs~d------g~I~iwd~~ 952 (1179)
.++++|+. |..+++|.++|+.+. +..+++. .....-..+...++..++++..+ |.|.++|..
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~ 172 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHY 172 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEECC
Confidence 66777665 456789999999765 6777763 11123344555544466666555 789999999
Q ss_pred CCeEEEEeccCCC---cEEEEEEcCCCCEEEEEe-------------------CCCeEEEEeCCCCceeEEeecC-C-CC
Q 001039 953 TDTCVATVGRCSS---AVLCMEYDDSTGILAAGG-------------------RDAVANIWDIRAGRQMHKFLGH-T-KW 1008 (1179)
Q Consensus 953 ~~~~~~~~~~~~~---~v~~l~~sp~~~~l~sgs-------------------~dg~I~iwD~~~~~~~~~~~~~-~-~~ 1008 (1179)
+++.+.++..... --..+.|+|+++.+++.. .+..|.+||+.+++.+.++... . ..
T Consensus 173 T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~ 252 (462)
T 2ece_A 173 SFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRM 252 (462)
T ss_dssp TCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEE
T ss_pred CCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCc
Confidence 9999998863222 234578899999888874 3689999999998888877653 2 23
Q ss_pred eEEEEE--cCC--EEEEEe------CCCcEEEEEccCCeee--EEe--ecC----------------CcCEEEEEEecCC
Q 001039 1009 IRSIRM--DRD--TVITGS------DDWTARMWSISRGTCD--AVL--ACH----------------AGPVQCVEYSSSD 1058 (1179)
Q Consensus 1009 I~sl~~--~~~--~l~sgs------~dg~I~iwd~~~~~~~--~~~--~~h----------------~~~V~~l~~spdg 1058 (1179)
...+.+ +++ ++.+++ .+++|.+|..+.++.. +.+ ... ......+.+|+||
T Consensus 253 P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DG 332 (462)
T 2ece_A 253 ALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDD 332 (462)
T ss_dssp EEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTS
T ss_pred cceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCC
Confidence 445555 544 544444 6778888776655321 111 110 2356789999999
Q ss_pred CEEEEEeC-CCcEEEEEcCCCCcceEEEeeccc----------------CceEEEEecCCCEEEEEE
Q 001039 1059 RGIITGSS-DGLLRFWENDDAGGIKCVKNVTIH----------------SSAILSINAGDHWLGIGA 1108 (1179)
Q Consensus 1059 ~~l~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~h----------------~~~i~sis~dg~~lasgs 1108 (1179)
++|.++.. .+.|.++|+.+....+.+..+... .-.-..+++||++|+++.
T Consensus 333 rfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 333 KFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 99987764 688999999755545655555332 134578899999999987
No 247
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.54 E-value=1.9e-05 Score=96.62 Aligned_cols=184 Identities=11% Similarity=0.106 Sum_probs=120.8
Q ss_pred CCEEEEEeC-CCcEEEEEC-CCCeEEEEeecCCCc----------E-EEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEE
Q 001039 893 RGKVVSGSD-DQSVLVWDK-QTSQLLEELKGHDAQ----------V-SCVRMLSGERVLTASHDGTVKMWDVRTDTCVAT 959 (1179)
Q Consensus 893 ~~~l~sgs~-dg~I~iwd~-~t~~~~~~~~~h~~~----------V-~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~ 959 (1179)
+..++.++. ++.|..+|. .+|+.+..+...... + ..++. .+..+++++.|+.+..+|..+|+.+..
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~~~dg~l~alD~~tG~~~W~ 140 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY-GAGQIVKKQANGHLLALDAKTGKINWE 140 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE-ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE-ECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence 566777777 899999999 899999887543210 0 11222 366888889999999999999998877
Q ss_pred eccCC----CcEEE-EEEcCCCCEEEEEeC------CCeEEEEeCCCCceeEEeecCCCC--------------------
Q 001039 960 VGRCS----SAVLC-MEYDDSTGILAAGGR------DAVANIWDIRAGRQMHKFLGHTKW-------------------- 1008 (1179)
Q Consensus 960 ~~~~~----~~v~~-l~~sp~~~~l~sgs~------dg~I~iwD~~~~~~~~~~~~~~~~-------------------- 1008 (1179)
..... ..+.+ ... .+..+++++. +|.|..+|.++|+.+.++......
T Consensus 141 ~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~ 218 (571)
T 2ad6_A 141 VEVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFG 218 (571)
T ss_dssp EECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSS
T ss_pred ecCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccc
Confidence 64321 01111 111 1345556654 799999999999998776532110
Q ss_pred -----------------e-EEEEEcC--CEEEEEeCC----------------CcEEEEEccCCeeeEEeecC--C----
Q 001039 1009 -----------------I-RSIRMDR--DTVITGSDD----------------WTARMWSISRGTCDAVLACH--A---- 1046 (1179)
Q Consensus 1009 -----------------I-~sl~~~~--~~l~sgs~d----------------g~I~iwd~~~~~~~~~~~~h--~---- 1046 (1179)
+ ..+++++ +.++.++.+ +.|..+|.++|+.+..++.. .
T Consensus 219 ~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~ 298 (571)
T 2ad6_A 219 LGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDF 298 (571)
T ss_dssp HHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCC
T ss_pred cccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCccccc
Confidence 0 1244443 466666532 35999999999998887632 1
Q ss_pred ----cCEEEEEEecCCC---EEEEEeCCCcEEEEEcCCCCc
Q 001039 1047 ----GPVQCVEYSSSDR---GIITGSSDGLLRFWENDDAGG 1080 (1179)
Q Consensus 1047 ----~~V~~l~~spdg~---~l~sgs~Dg~I~iwd~~~~~~ 1080 (1179)
.++ -+....+|+ .++.++.+|.++++|..+++.
T Consensus 299 ~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 338 (571)
T 2ad6_A 299 AGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNL 338 (571)
T ss_dssp CCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCE
T ss_pred ccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCE
Confidence 122 122334774 577888999999999988653
No 248
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.53 E-value=0.00011 Score=80.36 Aligned_cols=217 Identities=6% Similarity=-0.069 Sum_probs=136.9
Q ss_pred CceEEEEeecccceeccccccCCCC-EEEEEeCCCcEEEEcCCCCCceeEEEeccccccEE--EEecCCCEEEEE-eCCC
Q 001039 828 GAITALHCVTKREVWDLVGDREDAG-FFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKVVSG-SDDQ 903 (1179)
Q Consensus 828 ~~V~~v~~s~~~~~~~~~~~s~d~~-~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~--~~s~d~~~l~sg-s~dg 903 (1179)
....+++|. ++++ ++++-..++.|..++.+ +............... +++++++.++.+ ...+
T Consensus 36 ~~~~gi~~d------------~~~~~ly~~d~~~~~I~~~~~~--g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~ 101 (267)
T 1npe_A 36 KVIIGLAFD------------CVDKVVYWTDISEPSIGRASLH--GGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLD 101 (267)
T ss_dssp EEEEEEEEE------------TTTTEEEEEETTTTEEEEEESS--SCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTT
T ss_pred CcEEEEEEe------------cCCCEEEEEECCCCEEEEEecC--CCCcEEEEECCCCCccEEEEEecCCeEEEEECCCC
Confidence 456788887 5554 45555567899999976 2222222222112223 567776666555 4567
Q ss_pred cEEEEECCCCeEEEEeecCCCcEEEEEEeC-CCEEEEEEc---CCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEE
Q 001039 904 SVLVWDKQTSQLLEELKGHDAQVSCVRMLS-GERVLTASH---DGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGIL 979 (1179)
Q Consensus 904 ~I~iwd~~t~~~~~~~~~h~~~V~~l~~s~-~~~l~sgs~---dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l 979 (1179)
.|.+++.+.................+++.+ +..++.+.. .+.|..++...................++++++++.|
T Consensus 102 ~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~l 181 (267)
T 1npe_A 102 RIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQL 181 (267)
T ss_dssp EEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEE
T ss_pred EEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEE
Confidence 899999875432222222224678889985 677666654 3688888876433222222333567899999987766
Q ss_pred EEEe-CCCeEEEEeCCCCceeEEeecCCCCeEEEEEcCCEEEEEe-CCCcEEEEEccCCeeeEEeecCC-cCEEEEEEec
Q 001039 980 AAGG-RDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGS-DDWTARMWSISRGTCDAVLACHA-GPVQCVEYSS 1056 (1179)
Q Consensus 980 ~sgs-~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~h~-~~V~~l~~sp 1056 (1179)
..+. ..+.|..+|........... .......++.+++.++.+. .++.|..+|..+++.+..+.... .....+++.|
T Consensus 182 yv~d~~~~~I~~~~~~g~~~~~~~~-~~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~ 260 (267)
T 1npe_A 182 CWVDAGTHRAECLNPAQPGRRKVLE-GLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIAL 260 (267)
T ss_dssp EEEETTTTEEEEEETTEEEEEEEEE-CCCSEEEEEEETTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred EEEECCCCEEEEEecCCCceEEEec-CCCCceEEEEeCCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecC
Confidence 5554 56799999987654333333 2334567777777665555 56899999999999888876433 2467888888
Q ss_pred CCC
Q 001039 1057 SDR 1059 (1179)
Q Consensus 1057 dg~ 1059 (1179)
++.
T Consensus 261 ~~~ 263 (267)
T 1npe_A 261 SQC 263 (267)
T ss_dssp SCC
T ss_pred ccC
Confidence 764
No 249
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.51 E-value=0.00012 Score=79.84 Aligned_cols=221 Identities=6% Similarity=-0.074 Sum_probs=134.4
Q ss_pred CEEEEEeCCCcEEEEECCCCeE-----EEEeecCCCcEEEEEEeC-CCEEEEE-EcCCeEEEEeCCCCeEEEEeccCCCc
Q 001039 894 GKVVSGSDDQSVLVWDKQTSQL-----LEELKGHDAQVSCVRMLS-GERVLTA-SHDGTVKMWDVRTDTCVATVGRCSSA 966 (1179)
Q Consensus 894 ~~l~sgs~dg~I~iwd~~t~~~-----~~~~~~h~~~V~~l~~s~-~~~l~sg-s~dg~I~iwd~~~~~~~~~~~~~~~~ 966 (1179)
.+|+.+.. +.|+.++++.... ...+......+..+++.+ ++.++.+ ..++.|..+|...+............
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 34555543 4788888765432 111222234567888883 5555554 45789999998776544444333357
Q ss_pred EEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcC--CEEEEEeC---CCcEEEEEccCCeeeE
Q 001039 967 VLCMEYDDSTGILAAG-GRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR--DTVITGSD---DWTARMWSISRGTCDA 1040 (1179)
Q Consensus 967 v~~l~~sp~~~~l~sg-s~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~--~~l~sgs~---dg~I~iwd~~~~~~~~ 1040 (1179)
...+++++++..+..+ ..++.|.++|...................+++++ ..+..+.. .+.|..++++... ..
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~ 159 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RR 159 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CE
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cE
Confidence 7899999976555554 4567999999865432222222235678888875 45555543 4688888876433 33
Q ss_pred Eee-cCCcCEEEEEEecCCCEEEEEe-CCCcEEEEEcCCCCcceEEEeecccCceEEEEecCCCEEEEEE-CCCcEEEEe
Q 001039 1041 VLA-CHAGPVQCVEYSSSDRGIITGS-SDGLLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIGA-ADNSMSLFH 1117 (1179)
Q Consensus 1041 ~~~-~h~~~V~~l~~spdg~~l~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~lasgs-~Dg~I~iwd 1117 (1179)
.+. ..-.....++++++++.|..+. ..+.|.++|.+.. ........ ......+..++..+..+. .++.|.++|
T Consensus 160 ~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~---~~~~~~~~-~~~P~gi~~d~~~lyva~~~~~~v~~~d 235 (267)
T 1npe_A 160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP---GRRKVLEG-LQYPFAVTSYGKNLYYTDWKTNSVIAMD 235 (267)
T ss_dssp EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE---EEEEEEEC-CCSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred EEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC---ceEEEecC-CCCceEEEEeCCEEEEEECCCCeEEEEe
Confidence 332 3345688999999877665554 5678999998752 11111222 122345555566666655 458999999
Q ss_pred CCC
Q 001039 1118 RPQ 1120 (1179)
Q Consensus 1118 ~~~ 1120 (1179)
..+
T Consensus 236 ~~~ 238 (267)
T 1npe_A 236 LAI 238 (267)
T ss_dssp TTT
T ss_pred CCC
Confidence 873
No 250
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.49 E-value=3.9e-05 Score=93.84 Aligned_cols=186 Identities=11% Similarity=0.101 Sum_probs=122.7
Q ss_pred CCEEEEEeC-CCcEEEEEC-CCCeEEEEeecCCCc-----------EEEEEEe-CCCE----EEEEEcCCeEEEEeCCCC
Q 001039 893 RGKVVSGSD-DQSVLVWDK-QTSQLLEELKGHDAQ-----------VSCVRML-SGER----VLTASHDGTVKMWDVRTD 954 (1179)
Q Consensus 893 ~~~l~sgs~-dg~I~iwd~-~t~~~~~~~~~h~~~-----------V~~l~~s-~~~~----l~sgs~dg~I~iwd~~~~ 954 (1179)
+..+++++. ++.|..+|. .+|+.+.++...... ...+++. .+.. +++++.|+.+..+|..+|
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 567777777 889999999 899999887643221 1234442 2334 888899999999999999
Q ss_pred eEEEEeccCCC----cEEE-EEEcCCCCEEEEEe------CCCeEEEEeCCCCceeEEeecCCCC---------------
Q 001039 955 TCVATVGRCSS----AVLC-MEYDDSTGILAAGG------RDAVANIWDIRAGRQMHKFLGHTKW--------------- 1008 (1179)
Q Consensus 955 ~~~~~~~~~~~----~v~~-l~~sp~~~~l~sgs------~dg~I~iwD~~~~~~~~~~~~~~~~--------------- 1008 (1179)
+.+........ .+.+ -.+ .++ .+++++ .+|.|+-+|.++|+.+.++......
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~ 219 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH 219 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred CEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence 98877643220 1111 111 134 455554 3799999999999998776432211
Q ss_pred ----------------------eE-EEEE--cCCEEEEEeCC----------------CcEEEEEccCCeeeEEeecCCc
Q 001039 1009 ----------------------IR-SIRM--DRDTVITGSDD----------------WTARMWSISRGTCDAVLACHAG 1047 (1179)
Q Consensus 1009 ----------------------I~-sl~~--~~~~l~sgs~d----------------g~I~iwd~~~~~~~~~~~~h~~ 1047 (1179)
++ ..++ ..+.++.++.+ +.|..+|.++|+.+..++....
T Consensus 220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~ 299 (599)
T 1w6s_A 220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPH 299 (599)
T ss_dssp GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTT
T ss_pred ccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCC
Confidence 01 2333 34577777665 3899999999999888764221
Q ss_pred ----------CEEEEEEe-cCC---CEEEEEeCCCcEEEEEcCCCCcc
Q 001039 1048 ----------PVQCVEYS-SSD---RGIITGSSDGLLRFWENDDAGGI 1081 (1179)
Q Consensus 1048 ----------~V~~l~~s-pdg---~~l~sgs~Dg~I~iwd~~~~~~~ 1081 (1179)
++. +... .+| +.++.++.+|.++++|..+++..
T Consensus 300 d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 346 (599)
T 1w6s_A 300 DEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALV 346 (599)
T ss_dssp CSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred ccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEe
Confidence 121 2222 567 46778899999999999886533
No 251
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.49 E-value=1.1e-05 Score=87.50 Aligned_cols=186 Identities=12% Similarity=-0.008 Sum_probs=132.0
Q ss_pred EEecCCCEEEEE-eC--CCcEEEEECCCCeEEEEeecCCC-cEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEeccC
Q 001039 888 AINSDRGKVVSG-SD--DQSVLVWDKQTSQLLEELKGHDA-QVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRC 963 (1179)
Q Consensus 888 ~~s~d~~~l~sg-s~--dg~I~iwd~~t~~~~~~~~~h~~-~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~ 963 (1179)
.+++++ .|+.+ +. ++.|.++|..+++.+..+..... ....+++.++...++.-.++.+.++|..+++.+.++...
T Consensus 27 ~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g 105 (266)
T 2iwa_A 27 VYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ 105 (266)
T ss_dssp EECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECC
T ss_pred EEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECC
Confidence 457775 55544 32 58999999999999988763222 234566654444445556899999999999999888533
Q ss_pred -CCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCC-----CCeEEEEEcCCEEEEEe-CCCcEEEEEccCC
Q 001039 964 -SSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHT-----KWIRSIRMDRDTVITGS-DDWTARMWSISRG 1036 (1179)
Q Consensus 964 -~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~-----~~I~sl~~~~~~l~sgs-~dg~I~iwd~~~~ 1036 (1179)
.. ...++++|+.++++..++.|.++|..+.+.+..+.-.. ...+.+.+.+..+.+.. .++.|.+.|..++
T Consensus 106 ~~~---g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~~~~~~V~vID~~tg 182 (266)
T 2iwa_A 106 MKD---GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANIWQTDCIARISAKDG 182 (266)
T ss_dssp SSS---CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEEEEETTTC
T ss_pred CCC---eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEecCCCCeEEEEECCCC
Confidence 22 23355678878777788999999999998887765321 13566666544454444 6789999999999
Q ss_pred eeeEEeecC-------------CcCEEEEEEecCCCEEE-EEeCCCcEEEEEcCC
Q 001039 1037 TCDAVLACH-------------AGPVQCVEYSSSDRGII-TGSSDGLLRFWENDD 1077 (1179)
Q Consensus 1037 ~~~~~~~~h-------------~~~V~~l~~spdg~~l~-sgs~Dg~I~iwd~~~ 1077 (1179)
+.+..+... ....+.++|+|+++.++ ++...+++...++..
T Consensus 183 ~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 183 TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 998887632 13568999999987654 555778888888765
No 252
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.46 E-value=2.1e-05 Score=84.41 Aligned_cols=174 Identities=7% Similarity=0.047 Sum_probs=122.9
Q ss_pred EecCCCEEEEEeCCC--cEEEEECCCCeEEEEeecCCCcE-EEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCC
Q 001039 889 INSDRGKVVSGSDDQ--SVLVWDKQTSQLLEELKGHDAQV-SCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSS 965 (1179)
Q Consensus 889 ~s~d~~~l~sgs~dg--~I~iwd~~t~~~~~~~~~h~~~V-~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~ 965 (1179)
++ ++....+++.+| .|+++|+.+++.+..+....... -.++..++...++...++.+.+||..+.+.+.++.....
T Consensus 50 ~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~e 128 (262)
T 3nol_A 50 YR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGE 128 (262)
T ss_dssp EE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSC
T ss_pred EE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCC
Confidence 45 565566666665 89999999999999886543322 335554444444444689999999999999998864332
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecC--C---CCeEEEEEcCCEEEEEe-CCCcEEEEEccCCeee
Q 001039 966 AVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGH--T---KWIRSIRMDRDTVITGS-DDWTARMWSISRGTCD 1039 (1179)
Q Consensus 966 ~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~--~---~~I~sl~~~~~~l~sgs-~dg~I~iwd~~~~~~~ 1039 (1179)
. ..++++++.|+.+..++.|.++|..+.+.+.++... . ..++.+.+....+.+.. .++.|.+.|.++++.+
T Consensus 129 G---~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w~~~~I~vIDp~tG~V~ 205 (262)
T 3nol_A 129 G---WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVWQTNKIVRIDPETGKVT 205 (262)
T ss_dssp C---CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEEEECTTTCBEE
T ss_pred c---eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEccCCeEEEEECCCCcEE
Confidence 1 233356777777776789999999999988876542 1 23445666444444444 6889999999999998
Q ss_pred EEeecC------------CcCEEEEEEecCCCEEEEEeC
Q 001039 1040 AVLACH------------AGPVQCVEYSSSDRGIITGSS 1066 (1179)
Q Consensus 1040 ~~~~~h------------~~~V~~l~~spdg~~l~sgs~ 1066 (1179)
..+... ....+.++|+|+++.|...+.
T Consensus 206 ~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 206 GIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 887642 135689999999888777664
No 253
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.45 E-value=1.8e-06 Score=102.87 Aligned_cols=265 Identities=7% Similarity=-0.047 Sum_probs=168.2
Q ss_pred cCCCEEEEEeC-CCcEEEEECCCCeEEEEeecC-CCcEEEEEE---eCCCEEEEEE------------------cCCeEE
Q 001039 891 SDRGKVVSGSD-DQSVLVWDKQTSQLLEELKGH-DAQVSCVRM---LSGERVLTAS------------------HDGTVK 947 (1179)
Q Consensus 891 ~d~~~l~sgs~-dg~I~iwd~~t~~~~~~~~~h-~~~V~~l~~---s~~~~l~sgs------------------~dg~I~ 947 (1179)
+||++++.... ++.|.+.|+.+.++...+.-. ......+++ .++.++++++ .++.+.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 48888887765 457999999999988855432 345778887 4688888875 246899
Q ss_pred EEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCC---------------eEEEEeCCCCceeEEeecCCCCeEEE
Q 001039 948 MWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDA---------------VANIWDIRAGRQMHKFLGHTKWIRSI 1012 (1179)
Q Consensus 948 iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg---------------~I~iwD~~~~~~~~~~~~~~~~I~sl 1012 (1179)
++|..+.+...++.-.. ....++++|+|+++++.+.+. .+.+.|....+..
T Consensus 179 vID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~------------- 244 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKA------------- 244 (595)
T ss_dssp EEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHH-------------
T ss_pred EEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEe-------------
Confidence 99999999988875433 456788999999999988653 2333332221110
Q ss_pred EEcCCEEEEEeCCCcEEEEEccC--Cee-eEEeecCCcCEEEEEEecCCCEEEEEe-CCCcEEEEEcCCCCc--------
Q 001039 1013 RMDRDTVITGSDDWTARMWSISR--GTC-DAVLACHAGPVQCVEYSSSDRGIITGS-SDGLLRFWENDDAGG-------- 1080 (1179)
Q Consensus 1013 ~~~~~~l~sgs~dg~I~iwd~~~--~~~-~~~~~~h~~~V~~l~~spdg~~l~sgs-~Dg~I~iwd~~~~~~-------- 1080 (1179)
.-+++.... +.|.+.|.++ ++. +..+.. .....++.++|||+++++++ .+.+|.++|+.+...
T Consensus 245 v~~Gk~~~i----~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~ 319 (595)
T 1fwx_A 245 IAAGDYQEL----NGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADP 319 (595)
T ss_dssp HHHTCSEEE----TTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCG
T ss_pred ccCCCeeEE----CcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCc
Confidence 002332222 5599999998 555 445542 23567899999999887766 688999999986210
Q ss_pred -ceEEEeec-ccCceEEEEecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCccc-----EEEEE
Q 001039 1081 -IKCVKNVT-IHSSAILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAV-----VRCIA 1153 (1179)
Q Consensus 1081 -~~~~~~~~-~h~~~i~sis~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~-----V~~v~ 1153 (1179)
........ +..-.-++++++|....+..-|+.|.+||+.... ..+ .|.. .++.+.+...|..+ -.++.
T Consensus 320 ~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~-~~~--~g~~--~~~vi~kidV~yqpGh~~~~~g~t 394 (595)
T 1fwx_A 320 RSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAI-RAY--AGEK--VDPIKDKLDVHYQPGHLKTVMGET 394 (595)
T ss_dssp GGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHH-HHH--HTCS--CCCEEEEEECSSCEEEEEETTTTS
T ss_pred ccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhh-hhh--cccc--cceeEEEeecccccccceeccceE
Confidence 01233333 3333447889999544566679999999986310 000 0111 11334444333322 12335
Q ss_pred EcCCCCEEEEEe---CCCcE----------EEEECCCCC
Q 001039 1154 SDLERKRICSGG---RNGLL----------RLWEATINI 1179 (1179)
Q Consensus 1154 fspdg~~Lasgs---~Dg~I----------~vWdv~tg~ 1179 (1179)
.+|||++|+++. .|+.+ .+.|+++++
T Consensus 395 ~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 395 LDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp TTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred eCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 689999999884 35432 778876553
No 254
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.41 E-value=0.00014 Score=89.01 Aligned_cols=186 Identities=14% Similarity=0.139 Sum_probs=119.0
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcE---------EEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEeccC
Q 001039 893 RGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQV---------SCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRC 963 (1179)
Q Consensus 893 ~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V---------~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~ 963 (1179)
+..++.++.++.|..+|..+|+.+.++....... ..++. .++.+++++.|+.|..+|..+|+.+......
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~-~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI-YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE-ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE-ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 4556666664459999999999998876443210 12222 3667888999999999999999998776432
Q ss_pred CC----cEE---EEEEc-CCCC-EEEEEeC------CCeEEEEeCCCCceeEEeecCCCCe-------------------
Q 001039 964 SS----AVL---CMEYD-DSTG-ILAAGGR------DAVANIWDIRAGRQMHKFLGHTKWI------------------- 1009 (1179)
Q Consensus 964 ~~----~v~---~l~~s-p~~~-~l~sgs~------dg~I~iwD~~~~~~~~~~~~~~~~I------------------- 1009 (1179)
.. .+. .+.-. .+++ .+++++. +|.|.-+|.++|+.+.........+
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w 226 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence 21 111 11111 1233 5656543 7899999999999877653321000
Q ss_pred ----------------------EEEEEc--CCEEEEEeC--------------------C----CcEEEEEccCCeeeEE
Q 001039 1010 ----------------------RSIRMD--RDTVITGSD--------------------D----WTARMWSISRGTCDAV 1041 (1179)
Q Consensus 1010 ----------------------~sl~~~--~~~l~sgs~--------------------d----g~I~iwd~~~~~~~~~ 1041 (1179)
...+++ .+.++.+.. | +.|..+|.++|+.+..
T Consensus 227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~ 306 (582)
T 1flg_A 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF 306 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence 123343 346665553 2 6899999999999888
Q ss_pred eec--CCc--------CEEEEEEe-cCCC---EEEEEeCCCcEEEEEcCCCCc
Q 001039 1042 LAC--HAG--------PVQCVEYS-SSDR---GIITGSSDGLLRFWENDDAGG 1080 (1179)
Q Consensus 1042 ~~~--h~~--------~V~~l~~s-pdg~---~l~sgs~Dg~I~iwd~~~~~~ 1080 (1179)
++. |.. ++. +... .+|+ .++.++.+|.++++|..+++.
T Consensus 307 ~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 358 (582)
T 1flg_A 307 YQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKL 358 (582)
T ss_dssp EESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCE
T ss_pred EeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCE
Confidence 753 321 121 1222 4674 788899999999999988653
No 255
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.29 E-value=0.00028 Score=74.97 Aligned_cols=189 Identities=11% Similarity=0.059 Sum_probs=128.5
Q ss_pred eeEEEecccccc--EEEEecCCCEE-EEEeCC--CcEEEEECCCCeEEEEeecCCCcE-EEEEEeCCCEEEEEEcCCeEE
Q 001039 874 ELRATLKGHTRT--VRAINSDRGKV-VSGSDD--QSVLVWDKQTSQLLEELKGHDAQV-SCVRMLSGERVLTASHDGTVK 947 (1179)
Q Consensus 874 ~~~~~l~~h~~~--v~~~s~d~~~l-~sgs~d--g~I~iwd~~t~~~~~~~~~h~~~V-~~l~~s~~~~l~sgs~dg~I~ 947 (1179)
+.+..+ .|... ...+..++..| .+.+.+ +.|+.+|+.+++.+..+....... -.++..++........++.+.
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~ 88 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGF 88 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEE
T ss_pred EEEEEc-CCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEE
Confidence 444555 34433 22443333444 444554 489999999999999886543322 344555555555555789999
Q ss_pred EEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCC-----CCeEEEEEcCCEEEEE
Q 001039 948 MWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHT-----KWIRSIRMDRDTVITG 1022 (1179)
Q Consensus 948 iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~-----~~I~sl~~~~~~l~sg 1022 (1179)
+||..+.+.+.++...... ..++ ++++.|+.+..++.|.++|..+.+.+.++.... ..++.+.+.+..+.+.
T Consensus 89 v~D~~tl~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyan 165 (243)
T 3mbr_X 89 VYDLATLTPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLAN 165 (243)
T ss_dssp EEETTTTEEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEE
T ss_pred EEECCcCcEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEE
Confidence 9999999999988654322 3443 567777777778999999999999888775422 3456677755544444
Q ss_pred e-CCCcEEEEEccCCeeeEEeecC-------------CcCEEEEEEecCCCEEEEEeC
Q 001039 1023 S-DDWTARMWSISRGTCDAVLACH-------------AGPVQCVEYSSSDRGIITGSS 1066 (1179)
Q Consensus 1023 s-~dg~I~iwd~~~~~~~~~~~~h-------------~~~V~~l~~spdg~~l~sgs~ 1066 (1179)
. .+..|.+.|.++|+.+..+... ..-.+.++++|+++.|...+.
T Consensus 166 vw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 166 VWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp ETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred ECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 4 6789999999999998887621 135689999998877766654
No 256
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.28 E-value=0.00031 Score=76.10 Aligned_cols=203 Identities=8% Similarity=-0.057 Sum_probs=137.0
Q ss_pred CeEEEEeecCCC--cEEEEEEeCCCEEEEEEc---CCeEEEEeCCCCeEEEEeccCC-CcEEEEEEcCCCCEEEEE-eCC
Q 001039 913 SQLLEELKGHDA--QVSCVRMLSGERVLTASH---DGTVKMWDVRTDTCVATVGRCS-SAVLCMEYDDSTGILAAG-GRD 985 (1179)
Q Consensus 913 ~~~~~~~~~h~~--~V~~l~~s~~~~l~sgs~---dg~I~iwd~~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~sg-s~d 985 (1179)
.+.+.++. |.. ....+.++++..++.++. ++.|.++|+.+++.+..+.-.. .....++++ ++.+..+ -.+
T Consensus 9 ~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~ 85 (266)
T 2iwa_A 9 VEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLK 85 (266)
T ss_dssp EEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTC
T ss_pred ceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecC
Confidence 34566664 443 368899986346665543 5899999999999988874322 223345554 4455444 467
Q ss_pred CeEEEEeCCCCceeEEeecCCCCeEEEEEcCCEEEEEeCCCcEEEEEccCCeeeEEeecCC-----cCEEEEEEecCCCE
Q 001039 986 AVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHA-----GPVQCVEYSSSDRG 1060 (1179)
Q Consensus 986 g~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~-----~~V~~l~~spdg~~ 1060 (1179)
+.+.++|..+.+.+.++......-..++.+++.++++..++.|.++|..+.+....+.-.. ..++.+.|. +|..
T Consensus 86 ~~v~viD~~t~~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~l 164 (266)
T 2iwa_A 86 NIGFIYDRRTLSNIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEV 164 (266)
T ss_dssp SEEEEEETTTTEEEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEE
Confidence 8999999999999988854323335688888877777788999999999988887776321 246788888 7755
Q ss_pred EEEEeCCCcEEEEEcCCCCcceEEEeeccc-------------CceEEEEecCCCEE-EEEECCCcEEEEeCCC
Q 001039 1061 IITGSSDGLLRFWENDDAGGIKCVKNVTIH-------------SSAILSINAGDHWL-GIGAADNSMSLFHRPQ 1120 (1179)
Q Consensus 1061 l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h-------------~~~i~sis~dg~~l-asgs~Dg~I~iwd~~~ 1120 (1179)
.+....++.|.+.|..+++....+.. .+. .-.-.+++++++.+ +++...+.+.+.++..
T Consensus 165 yvn~~~~~~V~vID~~tg~V~~~I~~-~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 165 WANIWQTDCIARISAKDGTLLGWILL-PNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp EEEETTSSEEEEEETTTCCEEEEEEC-HHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred EEecCCCCeEEEEECCCCcEEEEEEC-CCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 55555688999999999543333321 110 11235567887654 5555678898888764
No 257
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.28 E-value=4e-05 Score=82.14 Aligned_cols=174 Identities=7% Similarity=-0.027 Sum_probs=123.1
Q ss_pred EEec-CCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCc-EEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCC
Q 001039 888 AINS-DRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQ-VSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSS 965 (1179)
Q Consensus 888 ~~s~-d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~-V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~ 965 (1179)
.+.. ++....+.+.+|.|+++|+++++.+..+ -.... --.++..++...++...++.+.+||..+.+.+.++.....
T Consensus 59 GL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~e 137 (268)
T 3nok_A 59 GLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSGE 137 (268)
T ss_dssp EEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECSSC
T ss_pred eEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCCc
Confidence 4433 3445566677889999999999988877 32221 2346665565566666789999999999999998864332
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecC--C---CCeEEEEEcCCEEEEEe-CCCcEEEEEccCCeee
Q 001039 966 AVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGH--T---KWIRSIRMDRDTVITGS-DDWTARMWSISRGTCD 1039 (1179)
Q Consensus 966 ~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~--~---~~I~sl~~~~~~l~sgs-~dg~I~iwd~~~~~~~ 1039 (1179)
. ..++ ++++.|+.+..++.|.++|..+.+.+.++... . ..++.+.+....+.+.. .++.|.+.|.++++.+
T Consensus 138 G-wGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s~~I~vIDp~TG~V~ 214 (268)
T 3nok_A 138 G-WGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIWHSSDVLEIDPATGTVV 214 (268)
T ss_dssp C-CCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTCSEEEEECTTTCBEE
T ss_pred e-eEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEECCCCeEEEEeCCCCcEE
Confidence 2 3333 56788888777899999999999988876532 2 24456677444444444 6889999999999998
Q ss_pred EEeecC-------------CcCEEEEEEecCCCEEEEEe
Q 001039 1040 AVLACH-------------AGPVQCVEYSSSDRGIITGS 1065 (1179)
Q Consensus 1040 ~~~~~h-------------~~~V~~l~~spdg~~l~sgs 1065 (1179)
..+... ..-.+.|+++|+++.|+..+
T Consensus 215 ~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 215 GVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 887632 13578999999876665554
No 258
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.28 E-value=4e-05 Score=95.76 Aligned_cols=265 Identities=11% Similarity=0.063 Sum_probs=150.8
Q ss_pred EEec-CCCEEEEEeCCC-----------cEEEEECCCCeEE--EEeec-CCCcEEEEEEe-CCCEEEEEEc-CCeEEEEe
Q 001039 888 AINS-DRGKVVSGSDDQ-----------SVLVWDKQTSQLL--EELKG-HDAQVSCVRML-SGERVLTASH-DGTVKMWD 950 (1179)
Q Consensus 888 ~~s~-d~~~l~sgs~dg-----------~I~iwd~~t~~~~--~~~~~-h~~~V~~l~~s-~~~~l~sgs~-dg~I~iwd 950 (1179)
++.+ +++.++.|+.++ .+.+||..+++.. ..+.. +.....++++. ++..++.|+. ++.+.+||
T Consensus 192 av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd 271 (656)
T 1k3i_A 192 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYD 271 (656)
T ss_dssp EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEE
T ss_pred EEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEec
Confidence 5566 888888887543 5889999887532 22221 22333345555 7888888874 56899999
Q ss_pred CCCCeEEEEeccCC-CcEEEEEEcCCCCEEEEEe-CC-----CeEEEEeCCCCceeEEe-----ecCCCCeEEE-EEcCC
Q 001039 951 VRTDTCVATVGRCS-SAVLCMEYDDSTGILAAGG-RD-----AVANIWDIRAGRQMHKF-----LGHTKWIRSI-RMDRD 1017 (1179)
Q Consensus 951 ~~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~sgs-~d-----g~I~iwD~~~~~~~~~~-----~~~~~~I~sl-~~~~~ 1017 (1179)
..+++....-.... ..-.+++..+++++++.|+ .+ ..+.+||..+++-...- ......-.++ ..++.
T Consensus 272 ~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~ 351 (656)
T 1k3i_A 272 SSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNH 351 (656)
T ss_dssp GGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCS
T ss_pred CcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCc
Confidence 98876543322111 1123455667899999988 34 46999999876543220 0000000001 12333
Q ss_pred EEEEEeCC---------CcEEEEEccCCeeeEEeecCC---------cCEEEEEEec-CCCEEEEEeCCC----------
Q 001039 1018 TVITGSDD---------WTARMWSISRGTCDAVLACHA---------GPVQCVEYSS-SDRGIITGSSDG---------- 1068 (1179)
Q Consensus 1018 ~l~sgs~d---------g~I~iwd~~~~~~~~~~~~h~---------~~V~~l~~sp-dg~~l~sgs~Dg---------- 1068 (1179)
.++.|+.+ ..+..||..+.........+. ..-.++.+.. +++.++.|+.++
T Consensus 352 iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~ 431 (656)
T 1k3i_A 352 AWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNA 431 (656)
T ss_dssp CCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCE
T ss_pred eEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcc
Confidence 44444433 456788888776443332221 1234455544 677888887543
Q ss_pred -cEEEEEcCCCCcceEEE--eecccCc-eEEEEecCCCEEEEEECC-----------CcEEEEeCCCCCcCcccCCCCcc
Q 001039 1069 -LLRFWENDDAGGIKCVK--NVTIHSS-AILSINAGDHWLGIGAAD-----------NSMSLFHRPQERLGGFSGTGSKM 1133 (1179)
Q Consensus 1069 -~I~iwd~~~~~~~~~~~--~~~~h~~-~i~sis~dg~~lasgs~D-----------g~I~iwd~~~~~~~~~~~~g~~~ 1133 (1179)
.+.+||..+.. ...+. .+..... ....+.+++++++.|+.+ ..+.+||..+.
T Consensus 432 ~~v~~yd~~~~~-W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~------------ 498 (656)
T 1k3i_A 432 HIITLGEPGTSP-NTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQD------------ 498 (656)
T ss_dssp EEEECCSTTSCC-EEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGT------------
T ss_pred eEEEcCCCCCCC-eeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCC------------
Confidence 57788877632 22222 2211111 223345799999999864 46889998643
Q ss_pred ccceeeeecCCCcccEEEEEEcCCCCEEEEEeC
Q 001039 1134 SGWQLYRTPQKTVAVVRCIASDLERKRICSGGR 1166 (1179)
Q Consensus 1134 ~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~ 1166 (1179)
.|..............+..+.|||+.++.||.
T Consensus 499 -~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 499 -TFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp -EEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred -ceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 23333322222222334557799999999985
No 259
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.22 E-value=0.00019 Score=76.89 Aligned_cols=192 Identities=10% Similarity=0.083 Sum_probs=128.3
Q ss_pred eEEEEeecCCCc--EEEEEEeCCCEEEEEEcCC--eEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEe-CCCeE
Q 001039 914 QLLEELKGHDAQ--VSCVRMLSGERVLTASHDG--TVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGG-RDAVA 988 (1179)
Q Consensus 914 ~~~~~~~~h~~~--V~~l~~s~~~~l~sgs~dg--~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs-~dg~I 988 (1179)
+.+.++. |... ...+.|+++..+.+.+.+| .|+.+|+.+++.+..+.-.. ........++++.+.... .++.+
T Consensus 32 ~vv~~~p-hd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v 109 (262)
T 3nol_A 32 QIVHSYP-HDTKAFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLG 109 (262)
T ss_dssp EEEEEEE-CCTTCEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEE
T ss_pred EEEEEec-CCCCcccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEE
Confidence 3455663 4433 4788888766666777766 89999999999988875432 333322233344555544 58899
Q ss_pred EEEeCCCCceeEEeecCCCCeEEEEEcCCEEEEEeCCCcEEEEEccCCeeeEEeecC--C---cCEEEEEEecCCCEEEE
Q 001039 989 NIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACH--A---GPVQCVEYSSSDRGIIT 1063 (1179)
Q Consensus 989 ~iwD~~~~~~~~~~~~~~~~I~sl~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h--~---~~V~~l~~spdg~~l~s 1063 (1179)
.+||..+.+.+.++.... .-..++.+++.++.+..++.|.++|..+.+....+... . ..++.+.|. +|+..+.
T Consensus 110 ~v~D~~t~~~~~ti~~~~-eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan 187 (262)
T 3nol_A 110 FVWNIRNLRQVRSFNYDG-EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFAN 187 (262)
T ss_dssp EEEETTTCCEEEEEECSS-CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEE
T ss_pred EEEECccCcEEEEEECCC-CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEE
Confidence 999999999999886533 33577788887777777888999999999888876642 1 345667887 6765555
Q ss_pred EeCCCcEEEEEcCCCCcceEEEe--eccc-------Cc--eEEEEecCCCEEEEEEC
Q 001039 1064 GSSDGLLRFWENDDAGGIKCVKN--VTIH-------SS--AILSINAGDHWLGIGAA 1109 (1179)
Q Consensus 1064 gs~Dg~I~iwd~~~~~~~~~~~~--~~~h-------~~--~i~sis~dg~~lasgs~ 1109 (1179)
.-.++.|.+.|..+++....+.. +... .. .-.+++|+++.|.+.+.
T Consensus 188 ~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 188 VWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp ETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 54688999999998543333322 1100 01 12556787777777665
No 260
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.19 E-value=0.00013 Score=78.25 Aligned_cols=160 Identities=8% Similarity=-0.013 Sum_probs=116.4
Q ss_pred eEEEEeecCC--CcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcE--EEEEEcCCCCEEEEEeCCCeEE
Q 001039 914 QLLEELKGHD--AQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAV--LCMEYDDSTGILAAGGRDAVAN 989 (1179)
Q Consensus 914 ~~~~~~~~h~--~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v--~~l~~sp~~~~l~sgs~dg~I~ 989 (1179)
+.+.++. |. .-...+.|.++..+.+.+.+|.|+++|+.+++.+..+ - .... ..++... ++...+.-.++.+.
T Consensus 44 ~Vv~~~p-hd~~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~g-~~Ly~ltw~~~~v~ 119 (268)
T 3nok_A 44 HIIREYP-HATNAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASDG-ERLYQLTWTEGLLF 119 (268)
T ss_dssp EEEEEEE-CCTTCCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEECS-SCEEEEESSSCEEE
T ss_pred EEEEEEc-CCCccccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEeC-CEEEEEEccCCEEE
Confidence 4555553 43 3347888887777778888899999999999988877 2 2233 3355443 23444445688999
Q ss_pred EEeCCCCceeEEeecCCCCeEEEEEcCCEEEEEeCCCcEEEEEccCCeeeEEeecCC-----cCEEEEEEecCCCEEEEE
Q 001039 990 IWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHA-----GPVQCVEYSSSDRGIITG 1064 (1179)
Q Consensus 990 iwD~~~~~~~~~~~~~~~~I~sl~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~-----~~V~~l~~spdg~~l~sg 1064 (1179)
+||..+.+.+.++... ..-+.++.+++.++.+..++.|.++|..+.+.+..+.... ..++.+.|. +|+..+..
T Consensus 120 V~D~~Tl~~~~ti~~~-~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanv 197 (268)
T 3nok_A 120 TWSGMPPQRERTTRYS-GEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANI 197 (268)
T ss_dssp EEETTTTEEEEEEECS-SCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred EEECCcCcEEEEEeCC-CceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEE
Confidence 9999999999988653 3346778889988888889999999999998888776322 245777887 67655444
Q ss_pred eCCCcEEEEEcCCCC
Q 001039 1065 SSDGLLRFWENDDAG 1079 (1179)
Q Consensus 1065 s~Dg~I~iwd~~~~~ 1079 (1179)
-.++.|.+.|..+++
T Consensus 198 w~s~~I~vIDp~TG~ 212 (268)
T 3nok_A 198 WHSSDVLEIDPATGT 212 (268)
T ss_dssp TTCSEEEEECTTTCB
T ss_pred CCCCeEEEEeCCCCc
Confidence 467889999999854
No 261
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.14 E-value=3.7e-05 Score=96.07 Aligned_cols=265 Identities=12% Similarity=0.044 Sum_probs=149.3
Q ss_pred EEEEcc-CCCceeeccC-------------ceEeeeCCCCCCCCCCCCCCCCCCCcccccceEEE-ecccCceEEEEeec
Q 001039 773 QSMFSR-EASSRSHSFS-------------RVRKWTSDAANENGTPRKQDSTAGGKKIQSNIRII-RGHAGAITALHCVT 837 (1179)
Q Consensus 773 ~~~fSp-dg~~las~~~-------------dI~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~gH~~~V~~v~~s~ 837 (1179)
.+++.+ +|+.++.|+. ++.+||..+++.. .+..+ ..+.....++++.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~-----------------~~~~~~~~~~~~~~~~~~~- 251 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVS-----------------DRTVTVTKHDMFCPGISMD- 251 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBC-----------------CCEEEECSCCCSSCEEEEC-
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEE-----------------eCcccCCCCCCccccccCC-
Confidence 456777 8888887642 2778888876531 11222 1222222334444
Q ss_pred ccceeccccccCCCCEEEEEeC-CCcEEEEcCCCCCceeEEEeccccccEE-EEecCCCEEEEEe-CC-----CcEEEEE
Q 001039 838 KREVWDLVGDREDAGFFISGST-DCLVKIWDPSLRGSELRATLKGHTRTVR-AINSDRGKVVSGS-DD-----QSVLVWD 909 (1179)
Q Consensus 838 ~~~~~~~~~~s~d~~~Lasgs~-Dg~I~lWd~~~~~~~~~~~l~~h~~~v~-~~s~d~~~l~sgs-~d-----g~I~iwd 909 (1179)
.++++++.|+. ++.+.+||...........+........ ++.++++.++.|+ .+ ..+.+||
T Consensus 252 -----------~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd 320 (656)
T 1k3i_A 252 -----------GNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYS 320 (656)
T ss_dssp -----------TTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEE
T ss_pred -----------CCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeC
Confidence 78999999984 5689999976433333222222222222 3456899999988 34 5799999
Q ss_pred CCCCeEEEEe-----ecCCCcEEEEEEeCCCEEEEEEcC---------CeEEEEeCCCCeEEEEeccCC---------Cc
Q 001039 910 KQTSQLLEEL-----KGHDAQVSCVRMLSGERVLTASHD---------GTVKMWDVRTDTCVATVGRCS---------SA 966 (1179)
Q Consensus 910 ~~t~~~~~~~-----~~h~~~V~~l~~s~~~~l~sgs~d---------g~I~iwd~~~~~~~~~~~~~~---------~~ 966 (1179)
..+++-...- ......-.++...++..++.|+.+ ..+..||..+........... ..
T Consensus 321 ~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~ 400 (656)
T 1k3i_A 321 PSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMC 400 (656)
T ss_dssp TTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBT
T ss_pred CCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCC
Confidence 9887654320 000000000111134444455444 457889988776544332211 12
Q ss_pred EEEEEEcC-CCCEEEEEeCCC-----------eEEEEeCCCCceeEEe--ecCCC--CeEEEEE-cCCEEEEEeCC----
Q 001039 967 VLCMEYDD-STGILAAGGRDA-----------VANIWDIRAGRQMHKF--LGHTK--WIRSIRM-DRDTVITGSDD---- 1025 (1179)
Q Consensus 967 v~~l~~sp-~~~~l~sgs~dg-----------~I~iwD~~~~~~~~~~--~~~~~--~I~sl~~-~~~~l~sgs~d---- 1025 (1179)
-.++.+.. ++++++.|+.++ .+.+||..+....... ..+.. ...++.. ++..++.|+.+
T Consensus 401 ~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~ 480 (656)
T 1k3i_A 401 GNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIP 480 (656)
T ss_dssp CEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCT
T ss_pred CceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcC
Confidence 24444543 677888887543 6888898776544332 11222 2334445 77788888754
Q ss_pred -------CcEEEEEccCCeeeEE--eecCCcCEEEEEEecCCCEEEEEeC
Q 001039 1026 -------WTARMWSISRGTCDAV--LACHAGPVQCVEYSSSDRGIITGSS 1066 (1179)
Q Consensus 1026 -------g~I~iwd~~~~~~~~~--~~~h~~~V~~l~~spdg~~l~sgs~ 1066 (1179)
..+.+||..+++.... +........+..+.++|+.++.|+.
T Consensus 481 ~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 481 FEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp TCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred cCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 4689999987654332 1111222334556789999999985
No 262
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.10 E-value=0.0006 Score=72.46 Aligned_cols=162 Identities=9% Similarity=0.014 Sum_probs=114.4
Q ss_pred eEEEEeecCC--CcEEEEEEeCCCEEEEEEcC--CeEEEEeCCCCeEEEEeccCCCc-EEEEEEcCCCCEEEEEeCCCeE
Q 001039 914 QLLEELKGHD--AQVSCVRMLSGERVLTASHD--GTVKMWDVRTDTCVATVGRCSSA-VLCMEYDDSTGILAAGGRDAVA 988 (1179)
Q Consensus 914 ~~~~~~~~h~--~~V~~l~~s~~~~l~sgs~d--g~I~iwd~~~~~~~~~~~~~~~~-v~~l~~sp~~~~l~sgs~dg~I 988 (1179)
+.+.++. |. .-...+.|+++..+.+.+.+ +.|+.+|+.+++.+....-.... -..++.. .++.....-.++.+
T Consensus 10 ~v~~~~p-hd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v 87 (243)
T 3mbr_X 10 RVVKRYP-HDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEG 87 (243)
T ss_dssp EEEEEEE-CCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEE
T ss_pred EEEEEcC-CCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEE
Confidence 4555553 44 44678999886656666665 48999999999998887543221 1233443 23334444568899
Q ss_pred EEEeCCCCceeEEeecCCCCeEEEEEcCCEEEEEeCCCcEEEEEccCCeeeEEeecCC-----cCEEEEEEecCCCEEEE
Q 001039 989 NIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHA-----GPVQCVEYSSSDRGIIT 1063 (1179)
Q Consensus 989 ~iwD~~~~~~~~~~~~~~~~I~sl~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~-----~~V~~l~~spdg~~l~s 1063 (1179)
.+||..+.+.+.++.... .-+.++.+++.++.+..++.|.++|..+.+.+..+.-.. ..++.+.+. +|+..+.
T Consensus 88 ~v~D~~tl~~~~ti~~~~-~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyan 165 (243)
T 3mbr_X 88 FVYDLATLTPRARFRYPG-EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLAN 165 (243)
T ss_dssp EEEETTTTEEEEEEECSS-CCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEE
T ss_pred EEEECCcCcEEEEEeCCC-CceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEE
Confidence 999999999999886543 346788888877777789999999999998888776422 345677776 6665555
Q ss_pred EeCCCcEEEEEcCCCC
Q 001039 1064 GSSDGLLRFWENDDAG 1079 (1179)
Q Consensus 1064 gs~Dg~I~iwd~~~~~ 1079 (1179)
.-.+..|.+.|..+++
T Consensus 166 vw~s~~I~vIDp~tG~ 181 (243)
T 3mbr_X 166 VWLTSRIARIDPASGK 181 (243)
T ss_dssp ETTTTEEEEECTTTCB
T ss_pred ECCCCeEEEEECCCCC
Confidence 5467889999999854
No 263
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.08 E-value=0.00012 Score=87.50 Aligned_cols=231 Identities=11% Similarity=0.043 Sum_probs=153.0
Q ss_pred CCCCEEEEEeC-CCcEEEEcCCCCCceeEE--EeccccccEE--EE-e-cCCCEEEEEe------------------CCC
Q 001039 849 EDAGFFISGST-DCLVKIWDPSLRGSELRA--TLKGHTRTVR--AI-N-SDRGKVVSGS------------------DDQ 903 (1179)
Q Consensus 849 ~d~~~Lasgs~-Dg~I~lWd~~~~~~~~~~--~l~~h~~~v~--~~-s-~d~~~l~sgs------------------~dg 903 (1179)
+||+++..... ++.|.+.|+. ..++.. .+.... ... ++ + |+++++++++ .++
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~--t~~~~~ii~ip~g~-~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~ 175 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCD--VMKCDAILEIPNAK-GIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN 175 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETT--TTEEEEEEECSSCC-SEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECC--CceEeeEEeCCCCC-CCcceeeeecCCCcEEEEecccccccCCCCcccccccccCc
Confidence 57888877665 5569999976 445444 332212 233 33 4 8999999885 246
Q ss_pred cEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCC--------------------------------------
Q 001039 904 SVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDG-------------------------------------- 944 (1179)
Q Consensus 904 ~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg-------------------------------------- 944 (1179)
.+.++|.++.+...++.... .-..++.+ +++++++.+.+.
T Consensus 176 ~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~ 254 (595)
T 1fwx_A 176 VFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN 254 (595)
T ss_dssp EEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred eEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEEC
Confidence 89999999999988876433 33445566 677777766443
Q ss_pred eEEEEeCCC--CeE-EEEeccCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCc------------eeEEeecCCCC
Q 001039 945 TVKMWDVRT--DTC-VATVGRCSSAVLCMEYDDSTGILAAGG-RDAVANIWDIRAGR------------QMHKFLGHTKW 1008 (1179)
Q Consensus 945 ~I~iwd~~~--~~~-~~~~~~~~~~v~~l~~sp~~~~l~sgs-~dg~I~iwD~~~~~------------~~~~~~~~~~~ 1008 (1179)
.|.+.|.++ ++. +..+.. .....++.++|||+++++++ .+.+|.++|+.+.+ ..... .-...
T Consensus 255 ~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v-~vG~g 332 (595)
T 1fwx_A 255 GVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP-ELGLG 332 (595)
T ss_dssp TEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC-BCCSC
T ss_pred cEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc-CCCCC
Confidence 477777776 444 444432 23456799999999887766 57899999998653 22222 33345
Q ss_pred eEEEEEcCC--EEEEEeCCCcEEEEEccC----------CeeeEEeecCCcCE-----EEEEEecCCCEEEEEeC---CC
Q 001039 1009 IRSIRMDRD--TVITGSDDWTARMWSISR----------GTCDAVLACHAGPV-----QCVEYSSSDRGIITGSS---DG 1068 (1179)
Q Consensus 1009 I~sl~~~~~--~l~sgs~dg~I~iwd~~~----------~~~~~~~~~h~~~V-----~~l~~spdg~~l~sgs~---Dg 1068 (1179)
...++|+++ ..++...|++|.+||+.+ .+.+..+..|..+- .++..+|||++|+++.. |+
T Consensus 333 P~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr 412 (595)
T 1fwx_A 333 PLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDR 412 (595)
T ss_dssp EEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTS
T ss_pred cceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccc
Confidence 777888654 455677899999999987 55677776665432 12245899999998763 43
Q ss_pred c----------EEEEEcCCCCcceEEEe
Q 001039 1069 L----------LRFWENDDAGGIKCVKN 1086 (1179)
Q Consensus 1069 ~----------I~iwd~~~~~~~~~~~~ 1086 (1179)
. -.++|+.. +..+.+..
T Consensus 413 ~~~~gp~~~~~~ql~dis~-~~m~lv~d 439 (595)
T 1fwx_A 413 FLNVGPLKPENDQLIDISG-DKMVLVHD 439 (595)
T ss_dssp SCCCCSSCCEEEEEEECSS-SSCEEEEE
T ss_pred cccCCCCCCCcceEEEcCC-CcEEEEEE
Confidence 2 17899954 44555543
No 264
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.06 E-value=0.0036 Score=69.73 Aligned_cols=233 Identities=8% Similarity=0.003 Sum_probs=136.8
Q ss_pred CeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC--CeEE
Q 001039 913 SQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRD--AVAN 989 (1179)
Q Consensus 913 ~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~d--g~I~ 989 (1179)
.+.+..+... .....++|. ++..+++-..++.|..||.... ....+ ........++++++|+++++.... ..|.
T Consensus 22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~-~~~~~p~gia~~~dG~l~vad~~~~~~~v~ 98 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHA-TVEGKVSGLAFTSNGDLVATGWNADSIPVV 98 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEE-ECSSEEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEE-eCCCCceeEEEcCCCcEEEEeccCCcceEE
Confidence 4455555432 457788887 4555555557899999998754 33333 234568899999999966655432 2477
Q ss_pred EEeCCCCceeEEeec-CCCCeEEEEE-cCCEEEEEe-CCCcEEEEEccCCee-eEEee---------cCCcCEEEEEEec
Q 001039 990 IWDIRAGRQMHKFLG-HTKWIRSIRM-DRDTVITGS-DDWTARMWSISRGTC-DAVLA---------CHAGPVQCVEYSS 1056 (1179)
Q Consensus 990 iwD~~~~~~~~~~~~-~~~~I~sl~~-~~~~l~sgs-~dg~I~iwd~~~~~~-~~~~~---------~h~~~V~~l~~sp 1056 (1179)
.+|..+++....... .......++. .+..++... .++.|..+|..+++. +.... ..-...+.+ ++
T Consensus 99 ~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~ 176 (306)
T 2p4o_A 99 SLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KR 176 (306)
T ss_dssp EEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EE
T ss_pred EEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--Cc
Confidence 788777765432221 1222334443 344444444 588999999776532 21111 111234555 88
Q ss_pred CCCEEEEEe-CCCcEEEEEcCCCCcc---eEEEeecccCceEEEEecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCc
Q 001039 1057 SDRGIITGS-SDGLLRFWENDDAGGI---KCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSK 1132 (1179)
Q Consensus 1057 dg~~l~sgs-~Dg~I~iwd~~~~~~~---~~~~~~~~h~~~i~sis~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~ 1132 (1179)
+++.|+.+. ..+.|..++++..+.. ..+... ....-++++++|++.++....+.|.++|.... .
T Consensus 177 dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~--~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G~----------~ 244 (306)
T 2p4o_A 177 FGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ--TNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS----------T 244 (306)
T ss_dssp ETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES--CCCSSEEEBTTCCEEEECBTTCCEEEECTTCC----------E
T ss_pred CCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc--CCCCCeEECCCCCEEEEeCCCCeEEEECCCCC----------E
Confidence 887766554 5778999998752211 222211 12223677889988777767789999986421 0
Q ss_pred cccceeeeecCCCcccEEEEEEc---CCCCEEEEEeC
Q 001039 1133 MSGWQLYRTPQKTVAVVRCIASD---LERKRICSGGR 1166 (1179)
Q Consensus 1133 ~~~~~~~~~~~~h~~~V~~v~fs---pdg~~Lasgs~ 1166 (1179)
..+..........++++|. ||++.|..++.
T Consensus 245 ----~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 245 ----TIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp ----EEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred ----EEEeecccccCCceEEEEecccCCCCEEEEECC
Confidence 1111122223458999998 89887766654
No 265
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.05 E-value=0.033 Score=68.40 Aligned_cols=349 Identities=7% Similarity=-0.045 Sum_probs=180.3
Q ss_pred CcceEEEEEccCCCceeeccCc---eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceecc
Q 001039 768 GRSWVQSMFSREASSRSHSFSR---VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDL 844 (1179)
Q Consensus 768 ~~~i~~~~fSpdg~~las~~~d---I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~ 844 (1179)
......++|++.+..+..+... |..++.++... ....+..--.....+++.
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~------------------~~~v~~~~~~~P~GlAvD-------- 92 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES------------------VQNVVVSGLLSPDGLACD-------- 92 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----------------------CEEEECSSCSCEEEEEEE--------
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCc------------------eEEEEeCCCCCcCeEEEE--------
Confidence 3557788999977666554332 88888765420 112233323456788876
Q ss_pred ccccC-CCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEEEeC--CCcEEEEECCCCeEEEEeec
Q 001039 845 VGDRE-DAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSD--DQSVLVWDKQTSQLLEELKG 921 (1179)
Q Consensus 845 ~~~s~-d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~sgs~--dg~I~iwd~~t~~~~~~~~~ 921 (1179)
. .+++.++-...+.|.+.+.+......+..-......-.++.|.+..|+.+.. .+.|...+++..........
T Consensus 93 ----~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~ 168 (619)
T 3s94_A 93 ----WLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS 168 (619)
T ss_dssp ----TTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred ----ecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeC
Confidence 4 4555566666789999997622221111111122223357787666666553 35677777664333233333
Q ss_pred CCCcEEEEEEe-CCCEEEEE-EcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Q 001039 922 HDAQVSCVRML-SGERVLTA-SHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQM 999 (1179)
Q Consensus 922 h~~~V~~l~~s-~~~~l~sg-s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~ 999 (1179)
.-.....+++. +++.|+.+ ...+.|...|+..................+++..+ ..+++-..++.|...|..+++..
T Consensus 169 ~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~ 247 (619)
T 3s94_A 169 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGL 247 (619)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCC
T ss_pred CCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCccc
Confidence 44567888888 45555554 45678999998754433322212223346666655 34444445678888888776543
Q ss_pred EEeecCCCC--------------------------------------eEEEEEc--------------CC-EEEEEeCCC
Q 001039 1000 HKFLGHTKW--------------------------------------IRSIRMD--------------RD-TVITGSDDW 1026 (1179)
Q Consensus 1000 ~~~~~~~~~--------------------------------------I~sl~~~--------------~~-~l~sgs~dg 1026 (1179)
..+...... -.|.+.. ++ +|+.+ ..+
T Consensus 248 ~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~-~~~ 326 (619)
T 3s94_A 248 REIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLA-RRT 326 (619)
T ss_dssp EECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEE-ESS
T ss_pred EEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEE-ccc
Confidence 332111000 1111110 01 22222 234
Q ss_pred cEEEEEccCCeeeE-Eee-cCCcCEEEEEEecCCCEEEEEe-CCCcEEEEEcCCCCcceEEEeecccCceEEEEecC-CC
Q 001039 1027 TARMWSISRGTCDA-VLA-CHAGPVQCVEYSSSDRGIITGS-SDGLLRFWENDDAGGIKCVKNVTIHSSAILSINAG-DH 1102 (1179)
Q Consensus 1027 ~I~iwd~~~~~~~~-~~~-~h~~~V~~l~~spdg~~l~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~d-g~ 1102 (1179)
.|+..++....... .+. ..-..+.+++|++.+..|+.+. ..+.|+.++.+... ...+.........-+++.+. ++
T Consensus 327 ~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~-~~~v~~~~~~~p~GlAvD~~~~~ 405 (619)
T 3s94_A 327 DLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSG-SQFVVTAQIAHPDGIAVDWVARN 405 (619)
T ss_dssp CEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSCCCEEEEETTTTE
T ss_pred ceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCc-cEEEEECCCCCcCceEEecccCc
Confidence 56666665543211 111 1234578899998665555444 57789889887633 22222211122334566664 44
Q ss_pred EEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEE
Q 001039 1103 WLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSG 1164 (1179)
Q Consensus 1103 ~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasg 1164 (1179)
+.++-+..+.|.+.++.+... +.+. ...-...+++++.|....|..+
T Consensus 406 lY~tD~~~~~I~v~~~~G~~~-------------~~l~--~~~l~~P~~iavdp~~G~ly~t 452 (619)
T 3s94_A 406 LYWTDTGTDRIEVTRLNGTMR-------------KILI--SEDLEEPRAIVLDPMVGYMYWT 452 (619)
T ss_dssp EEEEETTTTEEEEEETTSCSC-------------EEEE--CTTCCSEEEEEEETTTTEEEEE
T ss_pred EEEEeCCCCcEEEEeCCCCeE-------------EEEE--ECCCCCeeeEEEEcCCCcEEEe
Confidence 555555678898888764311 1111 1123456788888864444433
No 266
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.05 E-value=0.001 Score=74.82 Aligned_cols=234 Identities=10% Similarity=0.034 Sum_probs=137.2
Q ss_pred cEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEec-c------------------CCCcEEEEEEcC-CCCEEEEEe
Q 001039 925 QVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVG-R------------------CSSAVLCMEYDD-STGILAAGG 983 (1179)
Q Consensus 925 ~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~-~------------------~~~~v~~l~~sp-~~~~l~sgs 983 (1179)
...++++. +++.++++..++.|..||..+++...... . ....+..+++++ +++ |+++.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d 98 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVD 98 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEE
Confidence 45567777 55668888889999999987765432111 0 013578899998 555 55555
Q ss_pred CCCeEEEEeCCCCceeEEeec-----CCCCeEEEEEcC-C-EEEEEeC------------------CCcEEEEEccCCee
Q 001039 984 RDAVANIWDIRAGRQMHKFLG-----HTKWIRSIRMDR-D-TVITGSD------------------DWTARMWSISRGTC 1038 (1179)
Q Consensus 984 ~dg~I~iwD~~~~~~~~~~~~-----~~~~I~sl~~~~-~-~l~sgs~------------------dg~I~iwd~~~~~~ 1038 (1179)
..+.+..+|..+++. ..+.. .......+++++ + .+..+.. +|.|..||..+++.
T Consensus 99 ~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 177 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET 177 (322)
T ss_dssp TTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred CCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence 556688999776542 22211 113467788866 3 3333332 36788888877764
Q ss_pred eEEeecCCcCEEEEEEecCCCEEEEE-eCCCcEEEEEcCCCC--cceEEEeecccCceEEEEecCCCEEEEEEC------
Q 001039 1039 DAVLACHAGPVQCVEYSSSDRGIITG-SSDGLLRFWENDDAG--GIKCVKNVTIHSSAILSINAGDHWLGIGAA------ 1109 (1179)
Q Consensus 1039 ~~~~~~h~~~V~~l~~spdg~~l~sg-s~Dg~I~iwd~~~~~--~~~~~~~~~~h~~~i~sis~dg~~lasgs~------ 1109 (1179)
..... .-...+.++++++|+.|+.+ +.++.|..|++.... ..+.+....+ ..-+++.++|++.++...
T Consensus 178 ~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g--P~gi~~d~~G~l~va~~~~~~~~~ 254 (322)
T 2fp8_A 178 TLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN--PGNIKRNADGHFWVSSSEELDGNM 254 (322)
T ss_dssp EEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS--EEEEEECTTSCEEEEEEEETTSST
T ss_pred EEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC--CCCeEECCCCCEEEEecCcccccc
Confidence 33322 12345679999999976655 556889999987532 1223322222 222456788886666544
Q ss_pred ----CCcEEEEeCCCCCcCcccCCCCccccceeeeecCCC-cccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001039 1110 ----DNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKT-VAVVRCIASDLERKRICSGGRNGLLRLWEATI 1177 (1179)
Q Consensus 1110 ----Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h-~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~t 1177 (1179)
.+.|..+|..... + ..+....+. ...++++++ .++++.++...++.|.+++++.
T Consensus 255 ~~~~~~~v~~~d~~G~~----------~---~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 255 HGRVDPKGIKFDEFGNI----------L---EVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp TSCEEEEEEEECTTSCE----------E---EEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred cCCCccEEEEECCCCCE----------E---EEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 4567777754221 1 111111111 234566666 4666666666788899998763
No 267
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.01 E-value=0.0056 Score=69.64 Aligned_cols=240 Identities=8% Similarity=-0.074 Sum_probs=139.6
Q ss_pred EEEEEccCCCceeeccCceEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceeccccccCCC
Q 001039 772 VQSMFSREASSRSHSFSRVRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDA 851 (1179)
Q Consensus 772 ~~~~fSpdg~~las~~~dI~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~ 851 (1179)
.+.+..+++.++.+....|+..+.++.. ....+.+ .....+++|.+ .++
T Consensus 37 ~C~~~~~~~~ll~~~~~~I~~i~~~g~~-------------------~~~~~~~-~~~~~~l~~d~-----------~~~ 85 (349)
T 3v64_C 37 SCKALGPEPVLLFANRIDIRQVLPHRSE-------------------YTLLLNN-LENAIALDFHH-----------RRE 85 (349)
T ss_dssp CEEESSSCCEEEEECBSCEEEECTTSCC-------------------EEEEECS-CSCEEEEEEET-----------TTT
T ss_pred cccccccCceeEeecccceEEEeCCCCe-------------------eEEeecC-CCceEEEEEec-----------ccc
Confidence 3445555444444444447777766433 2222333 33478888873 345
Q ss_pred CEEEEEeCCCcEEEEcCCCCCceeEEEecc--ccccEEEEecCCCEE-EEEeCCCcEEEEECCCCeEEEEeecCCCcEEE
Q 001039 852 GFFISGSTDCLVKIWDPSLRGSELRATLKG--HTRTVRAINSDRGKV-VSGSDDQSVLVWDKQTSQLLEELKGHDAQVSC 928 (1179)
Q Consensus 852 ~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~--h~~~v~~~s~d~~~l-~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~ 928 (1179)
.++++-...+.|..++.+.. ........ ....-.++.+.+..| ++-...+.|.+.+.+.......+...-.....
T Consensus 86 ~ly~~D~~~~~I~r~~~~g~--~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~ 163 (349)
T 3v64_C 86 LVFWSDVTLDRILRANLNGS--NVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRA 163 (349)
T ss_dssp EEEEEETTTTEEEEEETTSC--SCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEE
T ss_pred EEEEEeccCCceEEEecCCC--CceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcce
Confidence 55556666788999997632 22222221 122223667655555 45556788999998755433333334456788
Q ss_pred EEEeC-CCEEEEE-EcC-CeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeEEeec
Q 001039 929 VRMLS-GERVLTA-SHD-GTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGG-RDAVANIWDIRAGRQMHKFLG 1004 (1179)
Q Consensus 929 l~~s~-~~~l~sg-s~d-g~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs-~dg~I~iwD~~~~~~~~~~~~ 1004 (1179)
+++.+ +..++.. ..+ +.|..+++............-.....+++++++..|..+. ..+.|..+|+........+..
T Consensus 164 iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~ 243 (349)
T 3v64_C 164 IALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQ 243 (349)
T ss_dssp EEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred EEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeC
Confidence 88883 5555444 444 7888888764433222223345678999998776666554 567899999875433333333
Q ss_pred CCCCeEEEEEcCCE-EEEEeCCCcEEEEEccCCeeeEEeec
Q 001039 1005 HTKWIRSIRMDRDT-VITGSDDWTARMWSISRGTCDAVLAC 1044 (1179)
Q Consensus 1005 ~~~~I~sl~~~~~~-l~sgs~dg~I~iwd~~~~~~~~~~~~ 1044 (1179)
.......++++.+. +++-...+.|..+|..+|+....+..
T Consensus 244 ~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~ 284 (349)
T 3v64_C 244 GLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRN 284 (349)
T ss_dssp SCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred CCCCceEEEEECCEEEEecCCCCeEEEEEccCCCccEEecc
Confidence 44556677776554 44444567788888666766555543
No 268
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.96 E-value=0.0019 Score=72.57 Aligned_cols=225 Identities=6% Similarity=-0.029 Sum_probs=137.2
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCeEEEEeec--------------------CCCcEEEEEEeC-CCEEEEEEcCCeE
Q 001039 888 AINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKG--------------------HDAQVSCVRMLS-GERVLTASHDGTV 946 (1179)
Q Consensus 888 ~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~--------------------h~~~V~~l~~s~-~~~l~sgs~dg~I 946 (1179)
++.++++.++++..++.|..||..+++.. .+.. .......+++.+ +..++++...+.|
T Consensus 25 ~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~~i 103 (322)
T 2fp8_A 25 TFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHL 103 (322)
T ss_dssp ECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETTTEE
T ss_pred EEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECCCCE
Confidence 46778887888888999999998776543 2211 013478888884 7778888777778
Q ss_pred EEEeCCCCeEEEEecc----CCCcEEEEEEcC-CCCEEEEEeC-----------------CCeEEEEeCCCCceeEEeec
Q 001039 947 KMWDVRTDTCVATVGR----CSSAVLCMEYDD-STGILAAGGR-----------------DAVANIWDIRAGRQMHKFLG 1004 (1179)
Q Consensus 947 ~iwd~~~~~~~~~~~~----~~~~v~~l~~sp-~~~~l~sgs~-----------------dg~I~iwD~~~~~~~~~~~~ 1004 (1179)
..+|..+++....... .......+++++ +|++.++-.. +|.|..||..+++..... .
T Consensus 104 ~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~ 182 (322)
T 2fp8_A 104 SVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLL-K 182 (322)
T ss_dssp EEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEE-E
T ss_pred EEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEec-c
Confidence 9999776543221111 123468899999 8986665432 367899998776543222 1
Q ss_pred CCCCeEEEEEcC--CEEEEE-eCCCcEEEEEccCCe--eeEEeecCCcCEEEEEEecCCCEEEEEeC----------CCc
Q 001039 1005 HTKWIRSIRMDR--DTVITG-SDDWTARMWSISRGT--CDAVLACHAGPVQCVEYSSSDRGIITGSS----------DGL 1069 (1179)
Q Consensus 1005 ~~~~I~sl~~~~--~~l~sg-s~dg~I~iwd~~~~~--~~~~~~~h~~~V~~l~~spdg~~l~sgs~----------Dg~ 1069 (1179)
.......+++++ +.++.+ +.++.|..|++.... ....+....+ ...++++++|++.++... .+.
T Consensus 183 ~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~ 261 (322)
T 2fp8_A 183 ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPK 261 (322)
T ss_dssp EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEE
T ss_pred CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccE
Confidence 123345677864 445544 566899999987521 1122221233 788999999987766544 456
Q ss_pred EEEEEcCCCCcceEEEeeccc----CceEEEE-ecCCCEEEEEECCCcEEEEeCC
Q 001039 1070 LRFWENDDAGGIKCVKNVTIH----SSAILSI-NAGDHWLGIGAADNSMSLFHRP 1119 (1179)
Q Consensus 1070 I~iwd~~~~~~~~~~~~~~~h----~~~i~si-s~dg~~lasgs~Dg~I~iwd~~ 1119 (1179)
|..+|... +.+..+... -..+.++ ..++++.++...++.|..+++.
T Consensus 262 v~~~d~~G----~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 262 GIKFDEFG----NILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp EEEECTTS----CEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC-
T ss_pred EEEECCCC----CEEEEEECCCCCccccceEEEEeCCEEEEeecCCCceEEEecc
Confidence 77777642 223323221 1222223 2455555555567888888875
No 269
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.95 E-value=0.011 Score=66.61 Aligned_cols=271 Identities=9% Similarity=0.040 Sum_probs=141.4
Q ss_pred cCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEE-e--ccccccEEEEecCCCEEEEEeCCC
Q 001039 827 AGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRAT-L--KGHTRTVRAINSDRGKVVSGSDDQ 903 (1179)
Q Consensus 827 ~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~-l--~~h~~~v~~~s~d~~~l~sgs~dg 903 (1179)
...+.+|.|. +++..++ ++.+|.|.... + .+..-... . ......+.++..+++.++.++.+|
T Consensus 35 ~~~~~~v~~~------------~~~~~~~-~G~~g~i~~s~-D-gG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~g 99 (327)
T 2xbg_A 35 TATILDMSFI------------DRHHGWL-VGVNATLMETR-D-GGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGEPP 99 (327)
T ss_dssp SSCEEEEEES------------SSSCEEE-EETTTEEEEES-S-TTSSCEECCCCCSCCCCEEEEEEEETTEEEEEEETT
T ss_pred CCcEEEEEEC------------CCCcEEE-EcCCCeEEEeC-C-CCCCCeECCCCCCCCCccEEEEEecCCeEEEEECCC
Confidence 4568888875 4556666 45677664332 2 22211111 1 112334555533335555566667
Q ss_pred cEEEEECCCCeEEEEee---cCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEE-eccCCCcEEEEEEcCCCCEE
Q 001039 904 SVLVWDKQTSQLLEELK---GHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVAT-VGRCSSAVLCMEYDDSTGIL 979 (1179)
Q Consensus 904 ~I~iwd~~t~~~~~~~~---~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~-~~~~~~~v~~l~~sp~~~~l 979 (1179)
.|.. ..+.|+.-.... .+...+..+.+.++..++.++.+|.|..- ...|+.-.. .......+..+++.+++.++
T Consensus 100 ~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~ 177 (327)
T 2xbg_A 100 IMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPSGEYV 177 (327)
T ss_dssp EEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTTSCEE
T ss_pred eEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCCccEEEE-cCCCCCCEEeecCCCcceEEEEEcCCCcEE
Confidence 5544 333343322222 12345677777644455555666654322 223433222 23445678899999998877
Q ss_pred EEEeCCCeEEEEeC--CCCceeEEeecCCCCeEEEEEcCC-EEEEEeCCCcEEEEEccCCeeeEEee-c---CCcCEEEE
Q 001039 980 AAGGRDAVANIWDI--RAGRQMHKFLGHTKWIRSIRMDRD-TVITGSDDWTARMWSISRGTCDAVLA-C---HAGPVQCV 1052 (1179)
Q Consensus 980 ~sgs~dg~I~iwD~--~~~~~~~~~~~~~~~I~sl~~~~~-~l~sgs~dg~I~iwd~~~~~~~~~~~-~---h~~~V~~l 1052 (1179)
+++...+..+-+|- .+.+.+. ......+..+.++++ .++.++.+|.+++.+.+.++.-..+. . +...+.++
T Consensus 178 ~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v 255 (327)
T 2xbg_A 178 AVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDL 255 (327)
T ss_dssp EEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEE
T ss_pred EEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEE
Confidence 76654444444442 2223331 234557778887443 56666778888877533343322222 1 22358899
Q ss_pred EEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEEec-CCCEEEEEECCCcEEEEeC
Q 001039 1053 EYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINA-GDHWLGIGAADNSMSLFHR 1118 (1179)
Q Consensus 1053 ~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~-dg~~lasgs~Dg~I~iwd~ 1118 (1179)
++.+++..++++ .+|.+ .+..+.+.....+.........+.++.. ++..+++++.+|.|.-++-
T Consensus 256 ~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 256 AYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYVT 320 (327)
T ss_dssp EESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEECC
T ss_pred EecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcCCceEEEEcC
Confidence 999888776665 46766 4555554434433221112223333321 3445666678888776653
No 270
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.92 E-value=0.0052 Score=70.99 Aligned_cols=247 Identities=8% Similarity=-0.075 Sum_probs=143.9
Q ss_pred EEEccCCCceeeccCceEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceeccccccCCCCE
Q 001039 774 SMFSREASSRSHSFSRVRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGF 853 (1179)
Q Consensus 774 ~~fSpdg~~las~~~dI~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~ 853 (1179)
.+..+++.++.+....|+..++++.. ...... ......+++|.+ .++.+
T Consensus 82 ~~~~~~~~l~~~~~~~I~~i~~~~~~-------------------~~~~~~-~~~~~~gl~~d~-----------~~~~l 130 (386)
T 3v65_B 82 KALGPEPVLLFANRIDIRQVLPHRSE-------------------YTLLLN-NLENAIALDFHH-----------RRELV 130 (386)
T ss_dssp EECSSCCEEEEECBSCEEEECTTSCC-------------------CEEEEC-SCSCEEEEEEET-----------TTTEE
T ss_pred CCccccceeEeecCccceeeccCCCc-------------------EEEEec-CCCccEEEEEec-----------CCCeE
Confidence 34445443444434348888876543 222233 334567888872 34555
Q ss_pred EEEEeCCCcEEEEcCCCCCceeEEEeccc--cccEEEEecCCCEEE-EEeCCCcEEEEECCCCeEEEEeecCCCcEEEEE
Q 001039 854 FISGSTDCLVKIWDPSLRGSELRATLKGH--TRTVRAINSDRGKVV-SGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVR 930 (1179)
Q Consensus 854 Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h--~~~v~~~s~d~~~l~-sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~ 930 (1179)
+++-...+.|..++.+. ......+... ...-.++.+.+..|+ +-...+.|.+.+.+.......+...-.....++
T Consensus 131 y~~D~~~~~I~r~~~~g--~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~gia 208 (386)
T 3v65_B 131 FWSDVTLDRILRANLNG--SNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIA 208 (386)
T ss_dssp EEEETTTTEEEEEETTS--CCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEE
T ss_pred EEEeCCCCcEEEEecCC--CCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEE
Confidence 56666778899999763 2222222211 112236676555554 445567888888775443333343445678888
Q ss_pred Ee-CCCEEEEEE-cC-CeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeEEeecCC
Q 001039 931 ML-SGERVLTAS-HD-GTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGG-RDAVANIWDIRAGRQMHKFLGHT 1006 (1179)
Q Consensus 931 ~s-~~~~l~sgs-~d-g~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs-~dg~I~iwD~~~~~~~~~~~~~~ 1006 (1179)
+. .+..++.+. .. +.|..++.............-.....+++++++..|..+. ..+.|..+|+........+....
T Consensus 209 vdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~ 288 (386)
T 3v65_B 209 LHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGL 288 (386)
T ss_dssp EETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSC
T ss_pred EEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCC
Confidence 88 355555444 44 7888888765443333333345678999998766665554 56789999987544333333344
Q ss_pred CCeEEEEEcCC-EEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEE
Q 001039 1007 KWIRSIRMDRD-TVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVE 1053 (1179)
Q Consensus 1007 ~~I~sl~~~~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~ 1053 (1179)
.....++++.+ .+++....+.|..+|..+|+....+.........++
T Consensus 289 ~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~ 336 (386)
T 3v65_B 289 PHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIH 336 (386)
T ss_dssp SSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEE
T ss_pred CCceEEEEECCEEEEeeCCCCeEEEEECCCCcceEEEccCCCCCceEE
Confidence 56677777655 445555677888888767766666554333333443
No 271
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.89 E-value=0.024 Score=63.39 Aligned_cols=221 Identities=8% Similarity=-0.066 Sum_probs=130.4
Q ss_pred cCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEE-eCCCeEEEEeCCC---CceeEE-eecCCCCeEEEEEc-
Q 001039 942 HDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAG-GRDAVANIWDIRA---GRQMHK-FLGHTKWIRSIRMD- 1015 (1179)
Q Consensus 942 ~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sg-s~dg~I~iwD~~~---~~~~~~-~~~~~~~I~sl~~~- 1015 (1179)
....|+..|+.+.+....+. .......++|++.++.++.+ ..++.|..+|+.. +..... +.........++++
T Consensus 8 ~~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~ 86 (316)
T 1ijq_A 8 NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 86 (316)
T ss_dssp CBSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred CCCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEee
Confidence 34568899998877655553 34567899999876655554 4568999999876 122222 32222345677764
Q ss_pred -CC-EEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCC--CcEEEEEcCCCCcceEEEeecccC
Q 001039 1016 -RD-TVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSD--GLLRFWENDDAGGIKCVKNVTIHS 1091 (1179)
Q Consensus 1016 -~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~D--g~I~iwd~~~~~~~~~~~~~~~h~ 1091 (1179)
++ ..++-..++.|.+.|...................++++|.+..++.+... +.|...+++... ...+.......
T Consensus 87 ~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-~~~~~~~~~~~ 165 (316)
T 1ijq_A 87 IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQW 165 (316)
T ss_dssp TTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEECSSCSC
T ss_pred cCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-eEEEEECCCCC
Confidence 34 44555677899999987554433344344678999999977666555443 678888876422 22222111222
Q ss_pred ceEEEEecCCCEEEEEE-CCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcE
Q 001039 1092 SAILSINAGDHWLGIGA-ADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLL 1170 (1179)
Q Consensus 1092 ~~i~sis~dg~~lasgs-~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I 1170 (1179)
..-+++++++..|..+. ..+.|..+|...... +.+...........++++. ++...++-...+.|
T Consensus 166 P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~-------------~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V 231 (316)
T 1ijq_A 166 PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-------------KTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAI 231 (316)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------------EEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEE
T ss_pred ceEEEEeccCCEEEEEECCCCeEEEEecCCCce-------------EEEeecCCccCCcEEEEEE-CCEEEEEECCCCeE
Confidence 23466777766666554 557899999863211 1121111112234567774 35555566667788
Q ss_pred EEEECCCC
Q 001039 1171 RLWEATIN 1178 (1179)
Q Consensus 1171 ~vWdv~tg 1178 (1179)
..++..+|
T Consensus 232 ~~~~~~~g 239 (316)
T 1ijq_A 232 FSANRLTG 239 (316)
T ss_dssp EEEETTTC
T ss_pred EEEeCCCC
Confidence 88887655
No 272
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.87 E-value=0.014 Score=66.19 Aligned_cols=226 Identities=8% Similarity=-0.009 Sum_probs=133.8
Q ss_pred CEEEEEeCCCcEEEEcCCCCCceeEEEeccccccE-EEEecCCCEEEEE-eCCCcEEEEECCCCeEEEEeecCCCcEEEE
Q 001039 852 GFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTV-RAINSDRGKVVSG-SDDQSVLVWDKQTSQLLEELKGHDAQVSCV 929 (1179)
Q Consensus 852 ~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v-~~~s~d~~~l~sg-s~dg~I~iwd~~t~~~~~~~~~h~~~V~~l 929 (1179)
.+|+.+. ...|+..++. +........+...++ .++.+.++.|+.+ ...+.|..++...+.....+.........+
T Consensus 45 ~~ll~~~-~~~I~~i~~~--g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~gl 121 (349)
T 3v64_C 45 PVLLFAN-RIDIRQVLPH--RSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGL 121 (349)
T ss_dssp CEEEEEC-BSCEEEECTT--SCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEE
T ss_pred ceeEeec-ccceEEEeCC--CCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEE
Confidence 3444443 3458888865 333333333333322 2556665655544 467889999988765444333333445667
Q ss_pred EEe--CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEe-CC-CeEEEEeCCCCceeEEe-ec
Q 001039 930 RML--SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGG-RD-AVANIWDIRAGRQMHKF-LG 1004 (1179)
Q Consensus 930 ~~s--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs-~d-g~I~iwD~~~~~~~~~~-~~ 1004 (1179)
++. .+..+++-...+.|.+.+.........+.........++++|.+..+..+. .+ +.|..+++.... ...+ ..
T Consensus 122 avd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~ 200 (349)
T 3v64_C 122 AVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIADT 200 (349)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEESCCS
T ss_pred EEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC-cEEEEEC
Confidence 776 344455556678999999876544433434445678999999666555544 34 788888876433 3332 23
Q ss_pred CCCCeEEEEEcC--CEE-EEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcc
Q 001039 1005 HTKWIRSIRMDR--DTV-ITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGI 1081 (1179)
Q Consensus 1005 ~~~~I~sl~~~~--~~l-~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~ 1081 (1179)
.-.....+++++ +.| ++-+..+.|..+|++.......+........++++. .+...++-...+.|..++..+++..
T Consensus 201 ~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~ 279 (349)
T 3v64_C 201 HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQ 279 (349)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSC
T ss_pred CCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCcc
Confidence 344678889863 344 444556789999987544333343344566788873 4555555556777777775554433
Q ss_pred e
Q 001039 1082 K 1082 (1179)
Q Consensus 1082 ~ 1082 (1179)
.
T Consensus 280 ~ 280 (349)
T 3v64_C 280 E 280 (349)
T ss_dssp E
T ss_pred E
Confidence 3
No 273
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.86 E-value=0.12 Score=63.20 Aligned_cols=359 Identities=8% Similarity=-0.041 Sum_probs=183.0
Q ss_pred cceEEEEEccCCCceeeccCc---eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceeccc
Q 001039 769 RSWVQSMFSREASSRSHSFSR---VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLV 845 (1179)
Q Consensus 769 ~~i~~~~fSpdg~~las~~~d---I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~ 845 (1179)
.....+++.+.+..+..+... |.+-+.++.. ....+.+.-..-.+|++.
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~-------------------~~~l~~~~l~~P~~Iavd--------- 135 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-------------------RKVLFWQELDQPRAIALD--------- 135 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-------------------CEEEECSSCSCCCCEEEE---------
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC-------------------EEEEEeCCCCCCceEEEe---------
Confidence 345677999876655554433 8888877543 111222333344567765
Q ss_pred cccCCCCEEEEEeC--CCcEEEEcCCCCCceeEEEeccccccE--EEEecCCCEEEEEe-CCCcEEEEECCCCeEEEEee
Q 001039 846 GDREDAGFFISGST--DCLVKIWDPSLRGSELRATLKGHTRTV--RAINSDRGKVVSGS-DDQSVLVWDKQTSQLLEELK 920 (1179)
Q Consensus 846 ~~s~d~~~Lasgs~--Dg~I~lWd~~~~~~~~~~~l~~h~~~v--~~~s~d~~~l~sgs-~dg~I~iwd~~t~~~~~~~~ 920 (1179)
|.+..|..+.. .+.|...+++ +..........-..- .+++++++.|+.+. ..+.|...|++.........
T Consensus 136 ---p~~g~ly~tD~g~~~~I~r~~~d--G~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~ 210 (619)
T 3s94_A 136 ---PSSGFMYWTDWGEVPKIERAGMD--GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK 210 (619)
T ss_dssp ---TTTTEEEEEECSSSCEEEEEETT--SCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC----
T ss_pred ---cCCCeEEEeccCCCCEEEEEECC--CCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEe
Confidence 55444444432 3566666655 222222222122222 35677666666654 56788888887543322222
Q ss_pred cCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCC-------------------------cEEEEEE---
Q 001039 921 GHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSS-------------------------AVLCMEY--- 972 (1179)
Q Consensus 921 ~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~-------------------------~v~~l~~--- 972 (1179)
+.......+++..+..+++-..++.|...|..+++....+..... ....+++
T Consensus 211 ~~~~~P~gi~~~~~~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~ 290 (619)
T 3s94_A 211 GSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSP 290 (619)
T ss_dssp -----CCCEEESSSEEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECS
T ss_pred CCCCCceEEEEeCCEEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCC
Confidence 122223455655454444445677888888877654333211000 0001111
Q ss_pred --------cC-------CC--------CEEEEEeCCCeEEEEeCCCCceeE-Eee-cCCCCeEEEEEcC--CEEE-EEeC
Q 001039 973 --------DD-------ST--------GILAAGGRDAVANIWDIRAGRQMH-KFL-GHTKWIRSIRMDR--DTVI-TGSD 1024 (1179)
Q Consensus 973 --------sp-------~~--------~~l~sgs~dg~I~iwD~~~~~~~~-~~~-~~~~~I~sl~~~~--~~l~-sgs~ 1024 (1179)
.| ++ .+|+.+ ..+.|+..++....... .+. ..-..+.++++++ +.++ +-..
T Consensus 291 ~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~-~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~ 369 (619)
T 3s94_A 291 VKPFYQCACPTGVKLLENGKTCKDGATELLLLA-RRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDE 369 (619)
T ss_dssp STTSEEEECCTTCCBCTTSSCBCSSCSEEEEEE-ESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETT
T ss_pred CCCCceEeCCchheecccCcccCCCCceEEEEE-cccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCC
Confidence 11 11 122222 23456666665543211 111 1224567888864 3444 4445
Q ss_pred CCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCC-EEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEEecCCCE
Q 001039 1025 DWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDR-GIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHW 1103 (1179)
Q Consensus 1025 dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~-~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~ 1103 (1179)
.+.|+.++.+.......+...-.....++++..++ ..++-+..+.|.+.+++... .+.+..-......-.++.|....
T Consensus 370 ~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~-~~~l~~~~l~~P~~iavdp~~G~ 448 (619)
T 3s94_A 370 VRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM-RKILISEDLEEPRAIVLDPMVGY 448 (619)
T ss_dssp TTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECTTCCSEEEEEEETTTTE
T ss_pred CCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe-EEEEEECCCCCeeeEEEEcCCCc
Confidence 78899998876544444443345678899997554 55555567889999887632 22222111122233556776444
Q ss_pred EEEEEC--CCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeC-CCcEEEEECCC
Q 001039 1104 LGIGAA--DNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGR-NGLLRLWEATI 1177 (1179)
Q Consensus 1104 lasgs~--Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~-Dg~I~vWdv~t 1177 (1179)
|..... .+.|...++... .. ..+ ....-...+.++++++++.|..+.. .+.|...+++.
T Consensus 449 ly~tD~g~~~~I~r~~~dG~----------~~---~~l--~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG 510 (619)
T 3s94_A 449 MYWTDWGEIPKIERAALDGS----------DR---VVL--VNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDG 510 (619)
T ss_dssp EEEEECSSSCEEEEEETTSC----------SC---EEE--ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSS
T ss_pred EEEecCCCCCEEEEEccCCC----------cc---EEE--EeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCC
Confidence 444433 356666666422 11 111 1122345788999987777766643 45677777643
No 274
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.84 E-value=0.00075 Score=85.43 Aligned_cols=235 Identities=11% Similarity=-0.029 Sum_probs=128.2
Q ss_pred ceEEEEEc-cCCCceeecc-----Cc--eEeeeCCCC-CCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccc
Q 001039 770 SWVQSMFS-REASSRSHSF-----SR--VRKWTSDAA-NENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKRE 840 (1179)
Q Consensus 770 ~i~~~~fS-pdg~~las~~-----~d--I~vWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~ 840 (1179)
.+...+|| |||+++|.+. .. |+++|++++ +... .. +.+ ...+++|+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~---------------~~---~~~---~~~~~~Ws---- 229 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA---------------DK---VSG---TNGEIVWG---- 229 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC---------------CC---EEE---ECSCCEEC----
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC---------------cc---ccC---ceeeEEEe----
Confidence 45667999 9999988432 22 999999887 4100 01 111 12345565
Q ss_pred eeccccccCCCCEEEEEeCC-----CcEEEEcCCCCCceeEEEecc-ccccEE--EEecCCCEEEEEeC---CCcEEEEE
Q 001039 841 VWDLVGDREDAGFFISGSTD-----CLVKIWDPSLRGSELRATLKG-HTRTVR--AINSDRGKVVSGSD---DQSVLVWD 909 (1179)
Q Consensus 841 ~~~~~~~s~d~~~Lasgs~D-----g~I~lWd~~~~~~~~~~~l~~-h~~~v~--~~s~d~~~l~sgs~---dg~I~iwd 909 (1179)
|||+.|+....| ..|++|++..........+.. +..... .+++||++|+..+. ...|.++|
T Consensus 230 --------pDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d 301 (751)
T 2xe4_A 230 --------PDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLD 301 (751)
T ss_dssp --------SSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEE
T ss_pred --------cCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEE
Confidence 899888777655 257888876332222222222 222222 57999999887653 34688889
Q ss_pred CCCC--eE--EEEeecCCCcEEEEEEeCCCEEEEEEcC-----CeEEEEeCCCC-eEEE-EeccC-CCcEEEEEEcCCCC
Q 001039 910 KQTS--QL--LEELKGHDAQVSCVRMLSGERVLTASHD-----GTVKMWDVRTD-TCVA-TVGRC-SSAVLCMEYDDSTG 977 (1179)
Q Consensus 910 ~~t~--~~--~~~~~~h~~~V~~l~~s~~~~l~sgs~d-----g~I~iwd~~~~-~~~~-~~~~~-~~~v~~l~~sp~~~ 977 (1179)
+.++ +. .............+.|+.++.++..+.. ..|..+|+.++ +... .+... ...+..+.+. .+.
T Consensus 302 ~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~ 380 (751)
T 2xe4_A 302 LRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNY 380 (751)
T ss_dssp SSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSE
T ss_pred CCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCE
Confidence 8875 33 2223344556677777767776655443 36777787653 2222 22221 2244555554 334
Q ss_pred EEEEEeCCCe--EEEEeC-------CCCceeEEeecCC-CCeEEEE------EcCC-EEEEEeCC---CcEEEEEccCCe
Q 001039 978 ILAAGGRDAV--ANIWDI-------RAGRQMHKFLGHT-KWIRSIR------MDRD-TVITGSDD---WTARMWSISRGT 1037 (1179)
Q Consensus 978 ~l~sgs~dg~--I~iwD~-------~~~~~~~~~~~~~-~~I~sl~------~~~~-~l~sgs~d---g~I~iwd~~~~~ 1037 (1179)
++++...+|. |.++|+ .+++....+.... ..+..+. ++++ .+++.+.. +.+..+|+.+++
T Consensus 381 lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 460 (751)
T 2xe4_A 381 LVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS 460 (751)
T ss_dssp EEEEEEETTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred EEEEEEeCCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 4555666775 556665 3333134432211 2233442 2333 44443332 457777877765
Q ss_pred e
Q 001039 1038 C 1038 (1179)
Q Consensus 1038 ~ 1038 (1179)
.
T Consensus 461 ~ 461 (751)
T 2xe4_A 461 R 461 (751)
T ss_dssp E
T ss_pred E
Confidence 3
No 275
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.83 E-value=0.013 Score=67.61 Aligned_cols=230 Identities=9% Similarity=-0.008 Sum_probs=137.3
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccE-EEEecCCCEEE-EEeCCCcEEEEECCCCeEEEEeecCCCcEEE
Q 001039 851 AGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTV-RAINSDRGKVV-SGSDDQSVLVWDKQTSQLLEELKGHDAQVSC 928 (1179)
Q Consensus 851 ~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v-~~~s~d~~~l~-sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~ 928 (1179)
..+|+.+. ...|+..++. +........+...++ .++.+.++.|+ +-...+.|..++...+.....+.........
T Consensus 87 ~~~l~~~~-~~~I~~i~~~--~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~g 163 (386)
T 3v65_B 87 EPVLLFAN-RIDIRQVLPH--RSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGG 163 (386)
T ss_dssp CCEEEEEC-BSCEEEECTT--SCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCC
T ss_pred cceeEeec-CccceeeccC--CCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccE
Confidence 33444443 4568888876 333333333333322 24566555555 4456788999998876544444333334456
Q ss_pred EEEe--CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeC-C-CeEEEEeCCCCceeEEeec
Q 001039 929 VRML--SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGR-D-AVANIWDIRAGRQMHKFLG 1004 (1179)
Q Consensus 929 l~~s--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~-d-g~I~iwD~~~~~~~~~~~~ 1004 (1179)
+++. .+..+++-...+.|.+.++........+.........++++|.+..|+.+.. + +.|..+++...........
T Consensus 164 lavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~ 243 (386)
T 3v65_B 164 LAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADT 243 (386)
T ss_dssp EEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred EEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEEC
Confidence 6666 3444555566788999988755444444444466799999997766665543 3 6888888765433333333
Q ss_pred CCCCeEEEEEc--CCE-EEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcc
Q 001039 1005 HTKWIRSIRMD--RDT-VITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGI 1081 (1179)
Q Consensus 1005 ~~~~I~sl~~~--~~~-l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~ 1081 (1179)
.......++++ +.. .++-+..+.|..+|+........+........++++. .+..+++-...+.|..++..++...
T Consensus 244 ~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~ 322 (386)
T 3v65_B 244 HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQ 322 (386)
T ss_dssp SCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSC
T ss_pred CCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CCEEEEeeCCCCeEEEEECCCCcce
Confidence 44567888886 344 4455566789999987544433444344567788883 4555566666777888875554433
Q ss_pred eEE
Q 001039 1082 KCV 1084 (1179)
Q Consensus 1082 ~~~ 1084 (1179)
..+
T Consensus 323 ~~i 325 (386)
T 3v65_B 323 EII 325 (386)
T ss_dssp EEE
T ss_pred EEE
Confidence 333
No 276
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.80 E-value=0.027 Score=65.93 Aligned_cols=248 Identities=8% Similarity=0.020 Sum_probs=136.1
Q ss_pred cEEEEEEe--CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC-C----eEEEEeCCCCc
Q 001039 925 QVSCVRML--SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRD-A----VANIWDIRAGR 997 (1179)
Q Consensus 925 ~V~~l~~s--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~d-g----~I~iwD~~~~~ 997 (1179)
....++++ ++..|+++...+.|..+|..++...... ........++++++++.++++... + .+..++. .+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCc
Confidence 34677887 3566777766688999999877655444 345668899999999966666542 1 3433443 332
Q ss_pred ee--EEeecCCCCeEEEEEcC---CEEEEEeCCCcEEEEEccCCeeeEEeec-CCcCEEEEEEecCCCEEEEE-eCCCcE
Q 001039 998 QM--HKFLGHTKWIRSIRMDR---DTVITGSDDWTARMWSISRGTCDAVLAC-HAGPVQCVEYSSSDRGIITG-SSDGLL 1070 (1179)
Q Consensus 998 ~~--~~~~~~~~~I~sl~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~-h~~~V~~l~~spdg~~l~sg-s~Dg~I 1070 (1179)
.. ..+. .......+++++ .++++-..++.|..+|..++........ .......++|+|+|++|+.+ ...+.|
T Consensus 216 ~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I 294 (430)
T 3tc9_A 216 FKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI 294 (430)
T ss_dssp SCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred eeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence 22 2222 123445667755 3555555778999999887664332221 22457899999999955544 467789
Q ss_pred EEEEcCCC-Ccc---eEEEeeccc-------------Cce--EEEEe--------cCCCEEEEEECCCcEEEEeCCCCCc
Q 001039 1071 RFWENDDA-GGI---KCVKNVTIH-------------SSA--ILSIN--------AGDHWLGIGAADNSMSLFHRPQERL 1123 (1179)
Q Consensus 1071 ~iwd~~~~-~~~---~~~~~~~~h-------------~~~--i~sis--------~dg~~lasgs~Dg~I~iwd~~~~~~ 1123 (1179)
..++.+.. +.. ..+....+. ..+ ...+. .+|.+.++-...+.|+.++.. +.+
T Consensus 295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~-G~v 373 (430)
T 3tc9_A 295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQ-GRV 373 (430)
T ss_dssp EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECTT-SEE
T ss_pred EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECCC-CcE
Confidence 99887642 111 111111000 001 22232 234455554556677777732 222
Q ss_pred CcccCCCCc-cccceee-eecCCCcccEEEEEEcCC-CCEEEEEeCCCcEEEEECC
Q 001039 1124 GGFSGTGSK-MSGWQLY-RTPQKTVAVVRCIASDLE-RKRICSGGRNGLLRLWEAT 1176 (1179)
Q Consensus 1124 ~~~~~~g~~-~~~~~~~-~~~~~h~~~V~~v~fspd-g~~Lasgs~Dg~I~vWdv~ 1176 (1179)
..+.+.|.. ...+.-- ......-..-..++++|+ |.++++-..+..|+..+++
T Consensus 374 ~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 374 TTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 211111100 0000000 000011235789999995 6666665667788887764
No 277
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.78 E-value=0.048 Score=60.84 Aligned_cols=229 Identities=12% Similarity=-0.001 Sum_probs=134.4
Q ss_pred eeeccCc-eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCC
Q 001039 783 RSHSFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDC 861 (1179)
Q Consensus 783 las~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg 861 (1179)
|+.+..+ |+..|+++.. ....+. .-....+++|.+ .++.+.++-..++
T Consensus 4 ll~~~~~~I~~i~~~~~~-------------------~~~~~~-~~~~p~g~~~d~-----------~~~~ly~~D~~~~ 52 (316)
T 1ijq_A 4 LFFTNRHEVRKMTLDRSE-------------------YTSLIP-NLRNVVALDTEV-----------ASNRIYWSDLSQR 52 (316)
T ss_dssp EEEECBSSEEEEETTSCC-------------------CEEEEC-SCSSEEEEEEET-----------TTTEEEEEETTTT
T ss_pred EEEECCCeEEEEECCCcc-------------------eEehhc-CCCceEEEEEEe-----------CCCEEEEEECCCC
Confidence 3333344 8888887654 222332 334567888872 2345556666678
Q ss_pred cEEEEcCCCC--CceeEEEecc--ccccEEEEecCCCEEE-EEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCC
Q 001039 862 LVKIWDPSLR--GSELRATLKG--HTRTVRAINSDRGKVV-SGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGE 935 (1179)
Q Consensus 862 ~I~lWd~~~~--~~~~~~~l~~--h~~~v~~~s~d~~~l~-sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~ 935 (1179)
.|..++.+.. +......+.. ....-.++.+.++.|+ +-...+.|.+.+.+.......+.........+++. .+.
T Consensus 53 ~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g 132 (316)
T 1ijq_A 53 MICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHG 132 (316)
T ss_dssp EEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTT
T ss_pred cEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCC
Confidence 9999997631 0122222221 1222335666555554 44667899999987554433344344567888888 356
Q ss_pred EEEEEEcC--CeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeEEe-ec--CCCCe
Q 001039 936 RVLTASHD--GTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGG-RDAVANIWDIRAGRQMHKF-LG--HTKWI 1009 (1179)
Q Consensus 936 ~l~sgs~d--g~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs-~dg~I~iwD~~~~~~~~~~-~~--~~~~I 1009 (1179)
.++.+... +.|...++............-.....+++++++..|..+. ..+.|..+|..... ...+ .. .....
T Consensus 133 ~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P 211 (316)
T 1ijq_A 133 FMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHP 211 (316)
T ss_dssp EEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSE
T ss_pred EEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEeecCCccCCc
Confidence 65555543 6888888754332222223345678999999877666655 55789999987433 3333 21 23456
Q ss_pred EEEEEcCCE-EEEEeCCCcEEEEEccCCeeeEEee
Q 001039 1010 RSIRMDRDT-VITGSDDWTARMWSISRGTCDAVLA 1043 (1179)
Q Consensus 1010 ~sl~~~~~~-l~sgs~dg~I~iwd~~~~~~~~~~~ 1043 (1179)
..++++++. +++-...+.|..+|..+++....+.
T Consensus 212 ~giav~~~~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 212 FSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EEEEEETTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EEEEEECCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 677776664 4444566788888877776655554
No 278
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.75 E-value=0.021 Score=63.90 Aligned_cols=206 Identities=9% Similarity=-0.061 Sum_probs=125.1
Q ss_pred CceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEecc-ccccEEEEecCCCEE-EEEeCCCcE
Q 001039 828 GAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKG-HTRTVRAINSDRGKV-VSGSDDQSV 905 (1179)
Q Consensus 828 ~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~-h~~~v~~~s~d~~~l-~sgs~dg~I 905 (1179)
....+++|.+ .++.+.++-...+.|..++.+...........+ ....-.++.+.+..| ++-...+.|
T Consensus 35 ~~~~~ld~d~-----------~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I 103 (318)
T 3sov_A 35 EDAAAVDFVF-----------SHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRI 103 (318)
T ss_dssp EEEEEEEEEG-----------GGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred CccEEEEEEe-----------CCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEE
Confidence 3466888873 345666676678889999976332111111111 122223567655554 454567889
Q ss_pred EEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEc--CCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEE
Q 001039 906 LVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASH--DGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAG 982 (1179)
Q Consensus 906 ~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~--dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sg 982 (1179)
.+++.+.................+++. .+..++.+.. .+.|...+.............-.....+++++++..|..+
T Consensus 104 ~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~a 183 (318)
T 3sov_A 104 EVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWA 183 (318)
T ss_dssp EEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred EEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEE
Confidence 999987543333333444567888887 3555555542 5788888876433322333334567899999977666665
Q ss_pred e-CCCeEEEEeCCCCceeEEeecCCCCeEEEEEcCCE-EEEEeCCCcEEEEEccCCeeeEEeec
Q 001039 983 G-RDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDT-VITGSDDWTARMWSISRGTCDAVLAC 1044 (1179)
Q Consensus 983 s-~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~~-l~sgs~dg~I~iwd~~~~~~~~~~~~ 1044 (1179)
. ..+.|..+|+..........+.......++++.+. +++-...+.|..+|..+|+....+..
T Consensus 184 D~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~~~~~i~~ 247 (318)
T 3sov_A 184 DAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHS 247 (318)
T ss_dssp ETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred ECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCCceEEEeC
Confidence 4 56789999986433322233345566778877664 44555667899999877776665543
No 279
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.75 E-value=0.047 Score=63.17 Aligned_cols=219 Identities=10% Similarity=-0.036 Sum_probs=133.6
Q ss_pred cccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCC--ceeEEEeccccccE--EEEecCCCEE-EEE
Q 001039 825 GHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRG--SELRATLKGHTRTV--RAINSDRGKV-VSG 899 (1179)
Q Consensus 825 gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~--~~~~~~l~~h~~~v--~~~s~d~~~l-~sg 899 (1179)
.....+.+++|.+ .++.+.++-..++.|+.++++... .............. .++.+.++.| ++-
T Consensus 109 ~~~~~~~~l~~d~-----------~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d 177 (400)
T 3p5b_L 109 PNLRNVVALDTEV-----------ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTD 177 (400)
T ss_dssp CSCSCEEEEEEET-----------TTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred cccCcceEEeeee-----------ccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEE
Confidence 3455678899872 345555565667889999876211 11222222222222 3566644444 455
Q ss_pred eCCCcEEEEECCCCeEEEEeecCCCcEEEEEEeC-CCEEEEEEc--CCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCC
Q 001039 900 SDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLS-GERVLTASH--DGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDST 976 (1179)
Q Consensus 900 s~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s~-~~~l~sgs~--dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~ 976 (1179)
...+.|.+.+++.......+.........+++.+ +..++.... .+.|...++............-.....+++++++
T Consensus 178 ~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~ 257 (400)
T 3p5b_L 178 SVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLS 257 (400)
T ss_dssp TTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTT
T ss_pred CCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCC
Confidence 5678899999886655444444445678888884 555555543 3788888886544444443444678999999887
Q ss_pred CEEEEEe-CCCeEEEEeCCCCceeEEeec--CCCCeEEEEEcCC-EEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEE
Q 001039 977 GILAAGG-RDAVANIWDIRAGRQMHKFLG--HTKWIRSIRMDRD-TVITGSDDWTARMWSISRGTCDAVLACHAGPVQCV 1052 (1179)
Q Consensus 977 ~~l~sgs-~dg~I~iwD~~~~~~~~~~~~--~~~~I~sl~~~~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l 1052 (1179)
..|..+. ..+.|..+|+........... ......++++.++ .+++-...+.|..+|..+|+.+..+........++
T Consensus 258 ~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i 337 (400)
T 3p5b_L 258 GRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDM 337 (400)
T ss_dssp TEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEE
T ss_pred CEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceE
Confidence 7776665 467899999865433322222 2345667777666 45555567889999987887777666444445555
Q ss_pred EE
Q 001039 1053 EY 1054 (1179)
Q Consensus 1053 ~~ 1054 (1179)
..
T Consensus 338 ~v 339 (400)
T 3p5b_L 338 VL 339 (400)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 280
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.72 E-value=0.034 Score=61.67 Aligned_cols=221 Identities=13% Similarity=0.073 Sum_probs=130.1
Q ss_pred CceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEE--EEecCCCEEEEEeCCC--
Q 001039 828 GAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKVVSGSDDQ-- 903 (1179)
Q Consensus 828 ~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~--~~s~d~~~l~sgs~dg-- 903 (1179)
....+++|. ++++++++-..++.|..||.. +. ....... ..... ++.++|+.+++....+
T Consensus 32 ~~pegia~~------------~~g~lyv~d~~~~~I~~~d~~--g~-~~~~~~~-~~~p~gia~~~dG~l~vad~~~~~~ 95 (306)
T 2p4o_A 32 TFLENLASA------------PDGTIFVTNHEVGEIVSITPD--GN-QQIHATV-EGKVSGLAFTSNGDLVATGWNADSI 95 (306)
T ss_dssp CCEEEEEEC------------TTSCEEEEETTTTEEEEECTT--CC-EEEEEEC-SSEEEEEEECTTSCEEEEEECTTSC
T ss_pred CCcceEEEC------------CCCCEEEEeCCCCeEEEECCC--Cc-eEEEEeC-CCCceeEEEcCCCcEEEEeccCCcc
Confidence 445677776 788877777788999999965 22 2222211 12233 4678888666554332
Q ss_pred cEEEEECCCCeEEEEeec-CCCcEEEEEEeCCCEEEEEE-cCCeEEEEeCCCCeE-EEEec---------cCCCcEEEEE
Q 001039 904 SVLVWDKQTSQLLEELKG-HDAQVSCVRMLSGERVLTAS-HDGTVKMWDVRTDTC-VATVG---------RCSSAVLCME 971 (1179)
Q Consensus 904 ~I~iwd~~t~~~~~~~~~-h~~~V~~l~~s~~~~l~sgs-~dg~I~iwd~~~~~~-~~~~~---------~~~~~v~~l~ 971 (1179)
.|..+|..+++....... .......++..++..++++. .++.|..+|..+++. +.... ..-.....+
T Consensus 96 ~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi- 174 (306)
T 2p4o_A 96 PVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL- 174 (306)
T ss_dssp EEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE-
T ss_pred eEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc-
Confidence 477778778876433321 12233445544455555444 588999999876532 21110 111234555
Q ss_pred EcCCCCEEEEEe-CCCeEEEEeCCC-Cce--eEEeecCCCCeEEEEEc--CCEEEEEeCCCcEEEEEccCCeeeE--Eee
Q 001039 972 YDDSTGILAAGG-RDAVANIWDIRA-GRQ--MHKFLGHTKWIRSIRMD--RDTVITGSDDWTARMWSISRGTCDA--VLA 1043 (1179)
Q Consensus 972 ~sp~~~~l~sgs-~dg~I~iwD~~~-~~~--~~~~~~~~~~I~sl~~~--~~~l~sgs~dg~I~iwd~~~~~~~~--~~~ 1043 (1179)
+++++.+..+. ..+.|..+|+.. ++. ...+.. ......++++ ++++++....+.|.++|.. ++... .+.
T Consensus 175 -s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~ 251 (306)
T 2p4o_A 175 -KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE 251 (306)
T ss_dssp -EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG
T ss_pred -CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecc
Confidence 78887665554 567999999875 321 111111 1234456664 4566666667899999965 65432 233
Q ss_pred cCCcCEEEEEEe---cCCCEEEEEeCCC
Q 001039 1044 CHAGPVQCVEYS---SSDRGIITGSSDG 1068 (1179)
Q Consensus 1044 ~h~~~V~~l~~s---pdg~~l~sgs~Dg 1068 (1179)
......++++|. ++++.|+.++..+
T Consensus 252 ~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 252 QGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp GTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred cccCCceEEEEecccCCCCEEEEECCCC
Confidence 334568999998 8888877766544
No 281
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.65 E-value=0.053 Score=62.73 Aligned_cols=223 Identities=8% Similarity=-0.037 Sum_probs=137.8
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEE-EcCCeEEEEeCCCC----eEEEEeccCCCcEE
Q 001039 895 KVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTA-SHDGTVKMWDVRTD----TCVATVGRCSSAVL 968 (1179)
Q Consensus 895 ~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sg-s~dg~I~iwd~~~~----~~~~~~~~~~~~v~ 968 (1179)
+|+.+. ...|+..++.......... ....+..++|. .++.|+.+ ...+.|..+++... .....+........
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 444443 4678888887665544443 44567899998 45555544 45788999998752 23333433455678
Q ss_pred EEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcC--CEEEEEe--CCCcEEEEEccCCeeeEEee
Q 001039 969 CMEYDDS-TGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR--DTVITGS--DDWTARMWSISRGTCDAVLA 1043 (1179)
Q Consensus 969 ~l~~sp~-~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~--~~l~sgs--~dg~I~iwd~~~~~~~~~~~ 1043 (1179)
.+++++. +++.++-...+.|.+.|+........+.........+++++ ..|+... ..+.|...+++.........
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~ 242 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 242 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE
Confidence 9999984 44555555678999999876554444444455678889875 3454444 24788888876544433334
Q ss_pred cCCcCEEEEEEecCCCEEEEEe-CCCcEEEEEcCCCCcceEEEeecccCceEEEEec-CCCEEEEEECCCcEEEEeCCC
Q 001039 1044 CHAGPVQCVEYSSSDRGIITGS-SDGLLRFWENDDAGGIKCVKNVTIHSSAILSINA-GDHWLGIGAADNSMSLFHRPQ 1120 (1179)
Q Consensus 1044 ~h~~~V~~l~~spdg~~l~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~-dg~~lasgs~Dg~I~iwd~~~ 1120 (1179)
..-...+.+++++++..|..+. ..+.|..+|++... .+.+......-....+++. .+.++++....+.|..+|..+
T Consensus 243 ~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~ 320 (400)
T 3p5b_L 243 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLT 320 (400)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC-CEEEEECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSS
T ss_pred CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCc-cEEEEeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCC
Confidence 3446789999998877776665 46789999987533 3333322122223344443 344555555668888888553
No 282
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.64 E-value=0.093 Score=58.78 Aligned_cols=271 Identities=8% Similarity=-0.021 Sum_probs=142.0
Q ss_pred CCcceEEEEEccCCCceeeccCceEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceecccc
Q 001039 767 IGRSWVQSMFSREASSRSHSFSRVRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVG 846 (1179)
Q Consensus 767 h~~~i~~~~fSpdg~~las~~~dI~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~ 846 (1179)
....+..+.|.+++..++.+.....++..+.+..-... ..........+.+|.+.
T Consensus 34 ~~~~~~~v~~~~~~~~~~~G~~g~i~~s~DgG~tW~~~---------------~~~~~~~~~~~~~i~~~---------- 88 (327)
T 2xbg_A 34 TTATILDMSFIDRHHGWLVGVNATLMETRDGGQTWEPR---------------TLVLDHSDYRFNSVSFQ---------- 88 (327)
T ss_dssp CSSCEEEEEESSSSCEEEEETTTEEEEESSTTSSCEEC---------------CCCCSCCCCEEEEEEEE----------
T ss_pred CCCcEEEEEECCCCcEEEEcCCCeEEEeCCCCCCCeEC---------------CCCCCCCCccEEEEEec----------
Confidence 34578888999888888765544434555544310000 00001123467788775
Q ss_pred ccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEe--ccccccEEEE--ecCCCEEEEEeCCCcEEEEECCCCeE-EEEeec
Q 001039 847 DREDAGFFISGSTDCLVKIWDPSLRGSELRATL--KGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQL-LEELKG 921 (1179)
Q Consensus 847 ~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l--~~h~~~v~~~--s~d~~~l~sgs~dg~I~iwd~~t~~~-~~~~~~ 921 (1179)
+ +..++ ++.+|.|..-+ ..+..-.... ..+...+..+ ..++..+ .++.+|.|.. ..+.|+. ......
T Consensus 89 --~-~~~~~-~g~~g~i~~S~--DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~g~v~~-S~DgG~tW~~~~~~ 160 (327)
T 2xbg_A 89 --G-NEGWI-VGEPPIMLHTT--DGGQSWSQIPLDPKLPGSPRLIKALGNGSAE-MITNVGAIYR-TKDSGKNWQALVQE 160 (327)
T ss_dssp --T-TEEEE-EEETTEEEEES--STTSSCEECCCCTTCSSCEEEEEEEETTEEE-EEETTCCEEE-ESSTTSSEEEEECS
T ss_pred --C-CeEEE-EECCCeEEEEC--CCCCCceECccccCCCCCeEEEEEECCCCEE-EEeCCccEEE-EcCCCCCCEEeecC
Confidence 3 34444 44566554432 1222211111 1122334444 3444444 4455665432 2233322 222234
Q ss_pred CCCcEEEEEEeCCCEEEEEEcCCeEEE-EeC--CCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Q 001039 922 HDAQVSCVRMLSGERVLTASHDGTVKM-WDV--RTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQ 998 (1179)
Q Consensus 922 h~~~V~~l~~s~~~~l~sgs~dg~I~i-wd~--~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~ 998 (1179)
....+..+.+.++..++.++.+|.+.. +|- .+-+.+ -......+..+.+++++..+ .++.+|.+++.+...++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~--~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~t 237 (327)
T 2xbg_A 161 AIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPH--NRTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSEN 237 (327)
T ss_dssp CCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEE--ECCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEE
T ss_pred CCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeEC--CCCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCe
Confidence 456788888885444555555565544 332 122222 12345678899999988765 455678887764333433
Q ss_pred eEEeec----CCCCeEEEEEcC-CEEEEEeCCCcEEEEEccCCeeeEEeec---CCcCEEEEEEecCCCEEEEEeCCCcE
Q 001039 999 MHKFLG----HTKWIRSIRMDR-DTVITGSDDWTARMWSISRGTCDAVLAC---HAGPVQCVEYSSSDRGIITGSSDGLL 1070 (1179)
Q Consensus 999 ~~~~~~----~~~~I~sl~~~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~---h~~~V~~l~~spdg~~l~sgs~Dg~I 1070 (1179)
-..+.. ....+.++.+.+ ..+++++.+|.| .+..+.|+.-..+.. ....+.++.|.+++. +++++.+|.|
T Consensus 238 W~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i 315 (327)
T 2xbg_A 238 WGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGIL 315 (327)
T ss_dssp ECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEE
T ss_pred eEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceE
Confidence 222221 223578888853 345555567777 455555655444432 245688898886554 6666788977
Q ss_pred EEEEc
Q 001039 1071 RFWEN 1075 (1179)
Q Consensus 1071 ~iwd~ 1075 (1179)
.-++-
T Consensus 316 ~~~~~ 320 (327)
T 2xbg_A 316 LRYVT 320 (327)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 66653
No 283
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.61 E-value=0.11 Score=60.80 Aligned_cols=248 Identities=7% Similarity=-0.010 Sum_probs=136.2
Q ss_pred cEEEEEEeC---CCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCC
Q 001039 925 QVSCVRMLS---GERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDA-----VANIWDIRAG 996 (1179)
Q Consensus 925 ~V~~l~~s~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg-----~I~iwD~~~~ 996 (1179)
....+++.+ +..|+.+...+.|+.+|..+++..... ........++++++|+ |+.+...+ .+...+...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC
Confidence 356788874 466776665589999999888765544 3455689999999999 54444322 2333333222
Q ss_pred cee-EEeecCCCCeEEEEEcC---CEEEEEeCCCcEEEEEccCCeeeEEe-e-cCCcCEEEEEEecCCCEEEEEe-CCCc
Q 001039 997 RQM-HKFLGHTKWIRSIRMDR---DTVITGSDDWTARMWSISRGTCDAVL-A-CHAGPVQCVEYSSSDRGIITGS-SDGL 1069 (1179)
Q Consensus 997 ~~~-~~~~~~~~~I~sl~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~-~-~h~~~V~~l~~spdg~~l~sgs-~Dg~ 1069 (1179)
... ..+ ........+++++ .++++-..++.|+.+|..++.....+ . +....-..++++|+|++|+.+. ..+.
T Consensus 218 ~~~~~~~-~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~ 296 (433)
T 4hw6_A 218 FTERLSL-CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC 296 (433)
T ss_dssp TCCEEEE-EECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred eeccccc-cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence 110 111 1223345566654 34445556788999998877653322 2 1223345799999999655554 5678
Q ss_pred EEEEEcCCC-Ccc---eEEEeeccc--------------CceEEEE---------ecCCCEEEEEECCCcEEEEeCCCCC
Q 001039 1070 LRFWENDDA-GGI---KCVKNVTIH--------------SSAILSI---------NAGDHWLGIGAADNSMSLFHRPQER 1122 (1179)
Q Consensus 1070 I~iwd~~~~-~~~---~~~~~~~~h--------------~~~i~si---------s~dg~~lasgs~Dg~I~iwd~~~~~ 1122 (1179)
|+.++.+.. +.. ..+....+. ...-.++ ..+|.+.++-...+.|+.++.. +.
T Consensus 297 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~-G~ 375 (433)
T 4hw6_A 297 IYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPE-GR 375 (433)
T ss_dssp EEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTT-SE
T ss_pred EEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCC-CC
Confidence 999887631 111 111111000 0111444 4455566665566788888753 23
Q ss_pred cCcccCCCCc-cccceee-eecCCCcccEEEEEEc-CCCCEEEEEeCCCcEEEEECC
Q 001039 1123 LGGFSGTGSK-MSGWQLY-RTPQKTVAVVRCIASD-LERKRICSGGRNGLLRLWEAT 1176 (1179)
Q Consensus 1123 ~~~~~~~g~~-~~~~~~~-~~~~~h~~~V~~v~fs-pdg~~Lasgs~Dg~I~vWdv~ 1176 (1179)
+..+.+.+.. ...+.-- ......-.....|+++ ++|.++++-..+..|+..+++
T Consensus 376 v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 376 VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 3222222210 0000000 0001112346889999 677776666677888888764
No 284
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.60 E-value=0.026 Score=60.64 Aligned_cols=206 Identities=10% Similarity=0.100 Sum_probs=123.4
Q ss_pred EeccCCCcEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeec-CCCCeEEEEEcCC--EEEEEeCCCcEEEEEcc
Q 001039 959 TVGRCSSAVLCMEYDDSTGILA-AGGRDAVANIWDIRAGRQMHKFLG-HTKWIRSIRMDRD--TVITGSDDWTARMWSIS 1034 (1179)
Q Consensus 959 ~~~~~~~~v~~l~~sp~~~~l~-sgs~dg~I~iwD~~~~~~~~~~~~-~~~~I~sl~~~~~--~l~sgs~dg~I~iwd~~ 1034 (1179)
.+.+....+..++++|+++.|+ +...++.|...|.. ++.+..+.- .....-.+++.++ ++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 4455667899999999766555 57788899999998 888877642 2245677787543 44554567789999876
Q ss_pred CCee---eEEee------cCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCC---CCcceEEEe------ecccCceEEE
Q 001039 1035 RGTC---DAVLA------CHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDD---AGGIKCVKN------VTIHSSAILS 1096 (1179)
Q Consensus 1035 ~~~~---~~~~~------~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~---~~~~~~~~~------~~~h~~~i~s 1096 (1179)
.... ..... ..+.....++|+|+++.|+++.......+|.++. ......... .......-.+
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 5442 22221 1344578999999998888887766666666542 111122111 0111223345
Q ss_pred Eec-CCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeee---cCCCcccEEEEEEcCCCCEEEEEeCCCcEEE
Q 001039 1097 INA-GDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRT---PQKTVAVVRCIASDLERKRICSGGRNGLLRL 1172 (1179)
Q Consensus 1097 is~-dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~---~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~v 1172 (1179)
++| .+++++....++.+.++|...+. +..+.+... +...-..-..|+|.++|++.++ ++...+++
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~g~~----------~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~ 248 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLVGEV----------IGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYR 248 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTTCCE----------EEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEEcCCCCE----------EEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEE
Confidence 555 45666666677888888875331 111111110 0011235689999999985555 66665555
Q ss_pred EECC
Q 001039 1173 WEAT 1176 (1179)
Q Consensus 1173 Wdv~ 1176 (1179)
+.-.
T Consensus 249 f~~~ 252 (255)
T 3qqz_A 249 FTPQ 252 (255)
T ss_dssp EEC-
T ss_pred EEec
Confidence 5443
No 285
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.57 E-value=0.0033 Score=69.73 Aligned_cols=215 Identities=13% Similarity=0.115 Sum_probs=117.5
Q ss_pred CeEEEEeCCCCeEEEEec--cCCCcEEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCc---eeE--EeecCCCCeEE
Q 001039 944 GTVKMWDVRTDTCVATVG--RCSSAVLCMEYDDSTGILAAGGRD-----AVANIWDIRAGR---QMH--KFLGHTKWIRS 1011 (1179)
Q Consensus 944 g~I~iwd~~~~~~~~~~~--~~~~~v~~l~~sp~~~~l~sgs~d-----g~I~iwD~~~~~---~~~--~~~~~~~~I~s 1011 (1179)
..+..||..+++....-. ........+. -++..++.|+.+ ..+.+||..+.+ -.. .+........+
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~ 108 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGA 108 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeE
Confidence 468899998876443221 1111112222 356677777754 468999988765 222 22222233344
Q ss_pred EEEcCCEEEEEeCC-----CcEEEEEccCCeeeEEe--ecCCcCEEEEEEecCCCEEEEEeCC-----CcEEEEEcCCCC
Q 001039 1012 IRMDRDTVITGSDD-----WTARMWSISRGTCDAVL--ACHAGPVQCVEYSSSDRGIITGSSD-----GLLRFWENDDAG 1079 (1179)
Q Consensus 1012 l~~~~~~l~sgs~d-----g~I~iwd~~~~~~~~~~--~~h~~~V~~l~~spdg~~l~sgs~D-----g~I~iwd~~~~~ 1079 (1179)
+..++..++.|+.+ ..+.+||..+.+-...- ......-.++. -+++.++.|+.+ ..+.+||..+.
T Consensus 109 ~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~- 185 (301)
T 2vpj_A 109 TTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTG- 185 (301)
T ss_dssp EEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTT-
T ss_pred EEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCC-
Confidence 44566667777643 35888998876543322 21111112222 267777777754 45889998773
Q ss_pred cceEEEeecccCceEEEEecCCCEEEEEECC-----CcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEE
Q 001039 1080 GIKCVKNVTIHSSAILSINAGDHWLGIGAAD-----NSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIAS 1154 (1179)
Q Consensus 1080 ~~~~~~~~~~h~~~i~sis~dg~~lasgs~D-----g~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~f 1154 (1179)
....+...........++..++++++.|+.+ ..+.+||+.+. .|..+...........++.+
T Consensus 186 ~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~-------------~W~~~~~~p~~r~~~~~~~~ 252 (301)
T 2vpj_A 186 HWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTD-------------SWTTVTSMTTPRCYVGATVL 252 (301)
T ss_dssp EEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT-------------EEEEECCCSSCCBSCEEEEE
T ss_pred cEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCC-------------cEEECCCCCCcccceeEEEE
Confidence 2444433322222223344577888888764 46889998743 24433322211112223333
Q ss_pred cCCCCEEEEEeCC-----CcEEEEECCCC
Q 001039 1155 DLERKRICSGGRN-----GLLRLWEATIN 1178 (1179)
Q Consensus 1155 spdg~~Lasgs~D-----g~I~vWdv~tg 1178 (1179)
++++++.||.+ ..+.+||..++
T Consensus 253 --~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 253 --RGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp --TTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred --CCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 67788888766 35788888765
No 286
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.56 E-value=0.52 Score=61.90 Aligned_cols=359 Identities=11% Similarity=0.056 Sum_probs=195.9
Q ss_pred cceEEEEEccC------CCceeeccC-c--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeeccc
Q 001039 769 RSWVQSMFSRE------ASSRSHSFS-R--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKR 839 (1179)
Q Consensus 769 ~~i~~~~fSpd------g~~las~~~-d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~ 839 (1179)
..|.|+++.|. +.++|.|.. | |+++++.+.+.. ..+.+.+ .....++.+..
T Consensus 554 ~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~-----------------~~~~L~~-~~~p~si~l~~-- 613 (1158)
T 3ei3_A 554 HEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELL-----------------HKEMLGG-EIIPRSILMTT-- 613 (1158)
T ss_dssp SCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEE-----------------EEEECCS-SCCEEEEEEEE--
T ss_pred CceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeE-----------------EEEECCC-CCCCcEEEEEE--
Confidence 45777787763 367888875 5 999999753310 1111211 12334444431
Q ss_pred ceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeE---EEeccccccEE--EEecCCCEEEEEeCCCcEEEEECCCCe
Q 001039 840 EVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELR---ATLKGHTRTVR--AINSDRGKVVSGSDDQSVLVWDKQTSQ 914 (1179)
Q Consensus 840 ~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~---~~l~~h~~~v~--~~s~d~~~l~sgs~dg~I~iwd~~t~~ 914 (1179)
+ ....+|..|-.||.+.-+.++..++.+. ...-|. .++. .+...+..-+.+..+....++.-+ ++
T Consensus 614 -------~-~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~-~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~ 683 (1158)
T 3ei3_A 614 -------F-ESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGT-QPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HK 683 (1158)
T ss_dssp -------E-TTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCS-SCCEEEEEESSSCEEEEEESSSCEEEEESS-SS
T ss_pred -------e-CCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCC-CceEEEEEeeCCceeEEEECCCCEEEEEcC-Cc
Confidence 1 2346888999999986666543232222 123332 2332 344444433333334455555433 33
Q ss_pred EEEEeecCCCcE-EEEEEeC---CCEEEEEEcCCeEEEEeCCCCe--EEEEeccCCCcEEEEEEcCCCCEEEEEeCC---
Q 001039 915 LLEELKGHDAQV-SCVRMLS---GERVLTASHDGTVKMWDVRTDT--CVATVGRCSSAVLCMEYDDSTGILAAGGRD--- 985 (1179)
Q Consensus 915 ~~~~~~~h~~~V-~~l~~s~---~~~l~sgs~dg~I~iwd~~~~~--~~~~~~~~~~~v~~l~~sp~~~~l~sgs~d--- 985 (1179)
.... .-....+ ....|+. .+-++.. .++.++|..+.+.. .++++ .-...+..++++|+.+.++.+..+
T Consensus 684 l~~s-~l~~~~v~~~~~F~se~~~~g~v~~-~~~~LrI~~i~~~~~~~~~~i-pL~~Tprri~y~~~~~~~~v~~~~~~~ 760 (1158)
T 3ei3_A 684 LVFS-NVNLKEVNYMCPLNSDGYPDSLALA-NNSTLTIGTIDEIQKLHIRTV-PLYESPRKICYQEVSQCFGVLSSRIEV 760 (1158)
T ss_dssp EEEE-EBSSSCCCEEEEECCSSSTTEEEEE-CSSCEEEEEECCSSSEEEEEE-ECSSEEEEEEEEGGGTEEEEEEEEEEE
T ss_pred eEEe-ccChHHhceEeccCcccCCCcEEEE-cCCceEEEEecccCCeeEEEE-eCCCCceEEEEcCCCCEEEEEEEeccc
Confidence 3222 1122233 3334442 2334433 34568888765432 22333 234567888888877665544311
Q ss_pred ----------------------------------------------CeEEEEeCCCCceeEEeecCC-CCeEEEEE---c
Q 001039 986 ----------------------------------------------AVANIWDIRAGRQMHKFLGHT-KWIRSIRM---D 1015 (1179)
Q Consensus 986 ----------------------------------------------g~I~iwD~~~~~~~~~~~~~~-~~I~sl~~---~ 1015 (1179)
+.|++.|..+.+.+..+.-.. ..+.+++. .
T Consensus 761 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~ 840 (1158)
T 3ei3_A 761 QDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLG 840 (1158)
T ss_dssp ECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCT
T ss_pred cccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEc
Confidence 246777777777666554322 34445543 2
Q ss_pred ---CCEEEEEe----------CCCcEEEEEccCCeeeEEee-cCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcc
Q 001039 1016 ---RDTVITGS----------DDWTARMWSISRGTCDAVLA-CHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGI 1081 (1179)
Q Consensus 1016 ---~~~l~sgs----------~dg~I~iwd~~~~~~~~~~~-~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~ 1081 (1179)
..++++|+ ..|.|.+|++.+++.....+ ...++|++++-- +| +|++| ...+|++|++...+..
T Consensus 841 ~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g-~Lla~-ig~~l~vy~l~~~~~L 917 (1158)
T 3ei3_A 841 KDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NG-KLLAS-INSTVRLYEWTTEKEL 917 (1158)
T ss_dssp TCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TT-EEEEE-ETTEEEEEEECTTSCE
T ss_pred cCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CC-EEEEE-cCCEEEEEECCCCceE
Confidence 24788876 35789999997554322221 246789998754 35 45544 3478999999874433
Q ss_pred eEEEeecccCceEEEEecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEE
Q 001039 1082 KCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRI 1161 (1179)
Q Consensus 1082 ~~~~~~~~h~~~i~sis~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~L 1161 (1179)
++-...-.+ ..+..+...++++++|+.-..|.++..+.. .+ .+ ..+. -..+..+++++.+-.++ .+
T Consensus 918 ~~~~~~~~~-i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~-------~~-~L---~~~a-~D~~~~~vta~~~ld~~-t~ 983 (1158)
T 3ei3_A 918 RTECNHYNN-IMALYLKTKGDFILVGDLMRSVLLLAYKPM-------EG-NF---EEIA-RDFNPNWMSAVEILDDD-NF 983 (1158)
T ss_dssp EEEEEECCC-SCEEEEEEETTEEEEEESSBCEEEEEEETT-------TT-EE---EEEE-ECCSCBCEEEEEEEETT-EE
T ss_pred EEEeecccc-EEEEEEeccCCEEEEEEhhheEEEEEEEcC-------CC-eE---EEEE-eecccccEEEEEEEccC-cE
Confidence 321111111 123456667889999998888887654321 11 11 1121 12345678888886554 67
Q ss_pred EEEeCCCcEEEEECCC
Q 001039 1162 CSGGRNGLLRLWEATI 1177 (1179)
Q Consensus 1162 asgs~Dg~I~vWdv~t 1177 (1179)
+.++.+|.+.+.....
T Consensus 984 l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 984 LGAENAFNLFVCQKDS 999 (1158)
T ss_dssp EEEETTSEEEEEEECT
T ss_pred EEEcCCCcEEEEecCC
Confidence 7799999999887643
No 287
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.54 E-value=0.45 Score=62.50 Aligned_cols=302 Identities=12% Similarity=0.080 Sum_probs=159.0
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEEe--c------CCCEEEEEeC-CCcEEEEECCCCeEEEEeec
Q 001039 851 AGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAIN--S------DRGKVVSGSD-DQSVLVWDKQTSQLLEELKG 921 (1179)
Q Consensus 851 ~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s--~------d~~~l~sgs~-dg~I~iwd~~t~~~~~~~~~ 921 (1179)
+.+++.++ ++.+.+++++.......... .-...|.|++ + .+.+++.|.. |++++|+++.+.+.+....-
T Consensus 523 ~~~vvva~-g~~l~~fel~~~~L~~~~~~-~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L 600 (1158)
T 3ei3_A 523 SSQVVVAV-GRALYYLQIHPQELRQISHT-EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEML 600 (1158)
T ss_dssp SSEEEEEE-TTEEEEEEEETTEEEEEEEE-ECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEE-CCEEEEEEeeCCceeeeccc-CCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEEC
Confidence 34566665 67788877652211111111 1244677764 2 2478999996 99999999998776654332
Q ss_pred C-CCcEEEEEEe---CCCEEEEEEcCCeEEEEe--CCCCeEEEE--eccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 001039 922 H-DAQVSCVRML---SGERVLTASHDGTVKMWD--VRTDTCVAT--VGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDI 993 (1179)
Q Consensus 922 h-~~~V~~l~~s---~~~~l~sgs~dg~I~iwd--~~~~~~~~~--~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~ 993 (1179)
. .....++... ...++..|-.||.+.-+. ..+|+.... ..-...++.-..+...|..-+.+..+.-..++.-
T Consensus 601 ~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~ 680 (1158)
T 3ei3_A 601 GGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSS 680 (1158)
T ss_dssp CSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEES
T ss_pred CCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEc
Confidence 1 2234445443 345688888999976554 445544322 1112334544444444443333333444444443
Q ss_pred CCCceeEEeecCCCCeEEEE-Ec----CCEEEEEeCCCcEEEEEccCCe--eeEEeecCCcCEEEEEEecCCCEEEEEeC
Q 001039 994 RAGRQMHKFLGHTKWIRSIR-MD----RDTVITGSDDWTARMWSISRGT--CDAVLACHAGPVQCVEYSSSDRGIITGSS 1066 (1179)
Q Consensus 994 ~~~~~~~~~~~~~~~I~sl~-~~----~~~l~sgs~dg~I~iwd~~~~~--~~~~~~~h~~~V~~l~~spdg~~l~sgs~ 1066 (1179)
+ ++.... .-....+..++ |+ ++-++..+ ++.++|..+.+-. .++++. -...+..++++|+.+.++.+..
T Consensus 681 ~-~~l~~s-~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~ 756 (1158)
T 3ei3_A 681 N-HKLVFS-NVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSS 756 (1158)
T ss_dssp S-SSEEEE-EBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEE
T ss_pred C-CceEEe-ccChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEE
Confidence 3 332211 11222333333 32 44566444 4569988875432 223333 3457788888888776555432
Q ss_pred C-------------------------------------------------CcEEEEEcCCCCcceEEEeecc-cCceEEE
Q 001039 1067 D-------------------------------------------------GLLRFWENDDAGGIKCVKNVTI-HSSAILS 1096 (1179)
Q Consensus 1067 D-------------------------------------------------g~I~iwd~~~~~~~~~~~~~~~-h~~~i~s 1096 (1179)
+ +.|++.|-.+ ...+..+.- ....+.+
T Consensus 757 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t---~~~i~~~~l~~nE~~~s 833 (1158)
T 3ei3_A 757 RIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHT---FEVLHAHQFLQNEYALS 833 (1158)
T ss_dssp EEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTT---CCEEEEEECCTTEEEEE
T ss_pred eccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCC---CeEEEEEeCCCCcceEE
Confidence 1 1244555444 222222221 1223333
Q ss_pred E---e---cCCCEEEEEE----------CCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCE
Q 001039 1097 I---N---AGDHWLGIGA----------ADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKR 1160 (1179)
Q Consensus 1097 i---s---~dg~~lasgs----------~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~ 1160 (1179)
+ . ....++++|+ ..|.|++|++.+.+ .+.+... ...++|++++-- +|++
T Consensus 834 v~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~k-------------L~lv~~~-~v~g~v~al~~~-~g~L 898 (1158)
T 3ei3_A 834 LVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGK-------------LQTVAEK-EVKGAVYSMVEF-NGKL 898 (1158)
T ss_dssp EEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTE-------------EEEEEEE-EESSCEEEEEEE-TTEE
T ss_pred EEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCE-------------EEEEEEE-EcCCcCEEEeee-CCEE
Confidence 3 1 1247888887 34789999885221 1333322 235678888733 4544
Q ss_pred EEEEeCCCcEEEEECCCC
Q 001039 1161 ICSGGRNGLLRLWEATIN 1178 (1179)
Q Consensus 1161 Lasgs~Dg~I~vWdv~tg 1178 (1179)
||+. .++|++|++...
T Consensus 899 la~i--g~~l~vy~l~~~ 914 (1158)
T 3ei3_A 899 LASI--NSTVRLYEWTTE 914 (1158)
T ss_dssp EEEE--TTEEEEEEECTT
T ss_pred EEEc--CCEEEEEECCCC
Confidence 4433 478999998753
No 288
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.52 E-value=0.43 Score=60.09 Aligned_cols=313 Identities=10% Similarity=0.109 Sum_probs=171.5
Q ss_pred CceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEEEeCCCcEEE
Q 001039 828 GAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLV 907 (1179)
Q Consensus 828 ~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~sgs~dg~I~i 907 (1179)
..|.++... . ...|..|+.+| +..||... .............|.++..++..+..|+.+ -+..
T Consensus 63 ~~i~~i~~d------------~-~g~lWigT~~G-l~~yd~~~--~~f~~~~~~~~~~i~~i~~~~g~lWigt~~-Gl~~ 125 (758)
T 3ott_A 63 TRIYCGVII------------D-NTYLYMGTDNG-ILVYNYRA--DRYEQPETDFPTDVRTMALQGDTLWLGALN-GLYT 125 (758)
T ss_dssp SCEEEEEEE------------T-TTEEEEEETTE-EEEEETTT--TEECCCSCCCCSCEEEEEEETTEEEEEETT-EEEE
T ss_pred ceEEEEEEc------------C-CCcEEEEeCCC-eEEEeCCC--CEEECcccCCCceEEEEEecCCcEEEEcCC-ccee
Confidence 457777643 3 44677777666 78898652 222111111223466554445577777776 5888
Q ss_pred EECCCCeEEEEee----cCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEecc-----CCCcEEEEEEcCCCCE
Q 001039 908 WDKQTSQLLEELK----GHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGR-----CSSAVLCMEYDDSTGI 978 (1179)
Q Consensus 908 wd~~t~~~~~~~~----~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-----~~~~v~~l~~sp~~~~ 978 (1179)
+|..+++...... .....|.++....+..+..|+.+ -+..+|..+++....... ....|.++..+.++..
T Consensus 126 ~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~ 204 (758)
T 3ott_A 126 YQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYVGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQC 204 (758)
T ss_dssp EETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEEEETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTE
T ss_pred EeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEEEeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCE
Confidence 9987766433211 12346777776655556667765 477888877664322111 1234888888887776
Q ss_pred EEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcC-CEEEEEeCCCcEEEEEccCCeeeEEee-------cCCcCEE
Q 001039 979 LAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR-DTVITGSDDWTARMWSISRGTCDAVLA-------CHAGPVQ 1050 (1179)
Q Consensus 979 l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~-------~h~~~V~ 1050 (1179)
|..|+. +.+..+|..+++...........|.++..+. ..+..|+. +-+.+++..+++...... -....|.
T Consensus 205 lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~ 282 (758)
T 3ott_A 205 VWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIW 282 (758)
T ss_dssp EEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEE
T ss_pred EEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEE
Confidence 556664 4688899877654322111234577887764 36666665 458888877654432211 1234589
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeec----ccCceEEEEe--cCCCEEEEEECCCcEEEEeCCCCCcC
Q 001039 1051 CVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVT----IHSSAILSIN--AGDHWLGIGAADNSMSLFHRPQERLG 1124 (1179)
Q Consensus 1051 ~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~----~h~~~i~sis--~dg~~lasgs~Dg~I~iwd~~~~~~~ 1124 (1179)
++..+.+|. |..|+..| +.++.... ......... .....|.++. .+|. |..|+.+| +..++..++...
T Consensus 283 ~i~~D~~g~-lWiGT~~G-l~~~~~~~--~~~~~~~~~~~~~~~~~~v~~i~~D~~g~-lWiGt~~G-l~~~~~~~~~~~ 356 (758)
T 3ott_A 283 NIFADQEHN-IWLGTDYG-ISLSRYNS--ALQFIPISQITGTGDGNQFYSLFRDSKGF-YWFGGANG-LIRFTDPAGERH 356 (758)
T ss_dssp EEEECTTCC-EEEEESSS-EEEECCCC---CEEEEHHHHSCSCCCCBEEEEEECTTCC-EEEEETTE-EEEESCTTSSCC
T ss_pred EEEEcCCCC-EEEEeCCc-ccccccCC--ceeEEecccCCCCCCCceEEEEEEcCCCC-EEEeeCCc-ceeecccccccc
Confidence 998888776 45565666 55443321 122221100 1123566664 3344 44555554 666665432110
Q ss_pred cccCCCCccccceeeee----cCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001039 1125 GFSGTGSKMSGWQLYRT----PQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATIN 1178 (1179)
Q Consensus 1125 ~~~~~g~~~~~~~~~~~----~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~tg 1178 (1179)
.+ ..... ..-....|.++.-..+|++-+ |+ ++-+..++.+++
T Consensus 357 ~~----------~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~ 402 (758)
T 3ott_A 357 DA----------IWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDYATR 402 (758)
T ss_dssp CC----------EEECTTCSSSCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEETTTT
T ss_pred ee----------EEeccCCcCCCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCcCCC
Confidence 00 00100 001234688888888887544 44 345888887664
No 289
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.50 E-value=0.11 Score=57.96 Aligned_cols=224 Identities=8% Similarity=-0.005 Sum_probs=131.2
Q ss_pred CCcEEEEcCCCCCceeEEEeccccccE-EEEecCCCEE-EEEeCCCcEEEEECCCCeEE-EEeecCCCcEEEEEEe--CC
Q 001039 860 DCLVKIWDPSLRGSELRATLKGHTRTV-RAINSDRGKV-VSGSDDQSVLVWDKQTSQLL-EELKGHDAQVSCVRML--SG 934 (1179)
Q Consensus 860 Dg~I~lWd~~~~~~~~~~~l~~h~~~v-~~~s~d~~~l-~sgs~dg~I~iwd~~t~~~~-~~~~~h~~~V~~l~~s--~~ 934 (1179)
...|+..+++.........+.+-...+ .++.+.++.| ++-...+.|..++...+... ..+...-.....+++. .+
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g 91 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE 91 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence 457888887743212222222222222 2456544444 45456788999998765321 1222222345566766 34
Q ss_pred CEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCceeEEeecCCCCeEEE
Q 001039 935 ERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGR--DAVANIWDIRAGRQMHKFLGHTKWIRSI 1012 (1179)
Q Consensus 935 ~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~--dg~I~iwD~~~~~~~~~~~~~~~~I~sl 1012 (1179)
..+++-...+.|.+++...................++++|.+..++.+.. .+.|...++............-.....+
T Consensus 92 ~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pngl 171 (318)
T 3sov_A 92 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGL 171 (318)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEE
T ss_pred eEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEE
Confidence 45555566789999998755433333344556789999997666666653 5788888876433222222334567788
Q ss_pred EEcC--CEE-EEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEE
Q 001039 1013 RMDR--DTV-ITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCV 1084 (1179)
Q Consensus 1013 ~~~~--~~l-~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~ 1084 (1179)
++++ ..| ++-+..+.|..+|++................++++.. +..+++-...+.|..++..+++....+
T Consensus 172 avd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 172 TLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREI 245 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred EEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEE
Confidence 8874 344 4445678899999875433333333445667788763 445555556778888888765443333
No 290
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.47 E-value=0.41 Score=58.64 Aligned_cols=195 Identities=4% Similarity=-0.095 Sum_probs=109.7
Q ss_pred CcceEEEEEccCCCceeeccCc---eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceecc
Q 001039 768 GRSWVQSMFSREASSRSHSFSR---VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDL 844 (1179)
Q Consensus 768 ~~~i~~~~fSpdg~~las~~~d---I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~ 844 (1179)
-.....++|++++..+..+... |+.++.++.. ....+..-......+++.+
T Consensus 36 ~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~-------------------~~~v~~~g~~~P~GlAvD~------- 89 (628)
T 4a0p_A 36 VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSA-------------------LEHVVEFGLDYPEGMAVDW------- 89 (628)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-------------------CEEEECSSCSCCCEEEEET-------
T ss_pred CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCC-------------------cEEEEeCCCCCcceEEEEe-------
Confidence 3567889999977666554332 8778776543 1222222223456676641
Q ss_pred ccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccc--cEEEEecCCCEEEEEeC--CCcEEEEECCCCeEEEEee
Q 001039 845 VGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTR--TVRAINSDRGKVVSGSD--DQSVLVWDKQTSQLLEELK 920 (1179)
Q Consensus 845 ~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~--~v~~~s~d~~~l~sgs~--dg~I~iwd~~t~~~~~~~~ 920 (1179)
..+++.++-...+.|.+.+++...... .....-. .-.++.|....|+.+.. .+.|...+++........
T Consensus 90 ----~~~~LY~tD~~~~~I~v~~~dG~~~~~--l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~- 162 (628)
T 4a0p_A 90 ----LGKNLYWADTGTNRIEVSKLDGQHRQV--LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV- 162 (628)
T ss_dssp ----TTTEEEEEETTTTEEEEEETTSTTCEE--EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-
T ss_pred ----CCCEEEEEECCCCEEEEEecCCCcEEE--EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE-
Confidence 235555666667889999876322222 1212112 22256776666666653 567888887654332222
Q ss_pred cCCCcEEEEEEe-CCCEEEEE-EcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q 001039 921 GHDAQVSCVRML-SGERVLTA-SHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGR 997 (1179)
Q Consensus 921 ~h~~~V~~l~~s-~~~~l~sg-s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~ 997 (1179)
..-.....+++. +++.|+.+ ...+.|...|+..... ..+.........+++.. +..+++-...+.|...|..+++
T Consensus 163 ~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 163 PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence 344567888888 45665555 4567899999865443 23333334455677654 3333333346677777755543
No 291
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.45 E-value=0.0088 Score=66.24 Aligned_cols=224 Identities=11% Similarity=0.122 Sum_probs=120.1
Q ss_pred CEEEEEEcC----CeEEEEeCCCCeEEEEec--cCCCcEEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCceeEE--
Q 001039 935 ERVLTASHD----GTVKMWDVRTDTCVATVG--RCSSAVLCMEYDDSTGILAAGGRD-----AVANIWDIRAGRQMHK-- 1001 (1179)
Q Consensus 935 ~~l~sgs~d----g~I~iwd~~~~~~~~~~~--~~~~~v~~l~~sp~~~~l~sgs~d-----g~I~iwD~~~~~~~~~-- 1001 (1179)
..++.|+.+ ..+..||..+.+....-. .....-..+. -++..++.|+.+ ..+.+||..+.+-...
T Consensus 17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~ 94 (302)
T 2xn4_A 17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVY--MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN 94 (302)
T ss_dssp EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEE--ECCEEEEEeCcCCCccccceEEECCCCCceeeCCC
Confidence 344455533 457889988876443311 1111112222 266677777654 3588999887653322
Q ss_pred eecCCCCeEEEEEcCCEEEEEeCCC-----cEEEEEccCCeeeEEee--cCCcCEEEEEEecCCCEEEEEeCC-------
Q 001039 1002 FLGHTKWIRSIRMDRDTVITGSDDW-----TARMWSISRGTCDAVLA--CHAGPVQCVEYSSSDRGIITGSSD------- 1067 (1179)
Q Consensus 1002 ~~~~~~~I~sl~~~~~~l~sgs~dg-----~I~iwd~~~~~~~~~~~--~h~~~V~~l~~spdg~~l~sgs~D------- 1067 (1179)
+.........+..++..++.|+.++ .+.+||..+.+-...-. ...... +++. -+++.++.|+.+
T Consensus 95 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~ 172 (302)
T 2xn4_A 95 MRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSV-GVGV-VGGLLYAVGGYDVASRQCL 172 (302)
T ss_dssp CSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEECCEETTTTEEC
T ss_pred CCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCc-eEEE-ECCEEEEEeCCCCCCCccc
Confidence 2222223344455677777777553 47788887765433311 111111 2222 256677776643
Q ss_pred CcEEEEEcCCCCcceEEEeecccCceEEEEecCCCEEEEEECC-----CcEEEEeCCCCCcCcccCCCCccccceeeeec
Q 001039 1068 GLLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIGAAD-----NSMSLFHRPQERLGGFSGTGSKMSGWQLYRTP 1142 (1179)
Q Consensus 1068 g~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~lasgs~D-----g~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~ 1142 (1179)
..+.+||..+. ....+............+..++++++.|+.+ ..+.+||..+. .|..+...
T Consensus 173 ~~~~~yd~~~~-~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~-------------~W~~~~~~ 238 (302)
T 2xn4_A 173 STVECYNATTN-EWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTN-------------AWRQVADM 238 (302)
T ss_dssp CCEEEEETTTT-EEEEECCCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTT-------------EEEEECCC
T ss_pred cEEEEEeCCCC-cEEECCCCccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCC-------------CEeeCCCC
Confidence 35888998773 2444333322222223334577888888764 46888888743 24433322
Q ss_pred CCCcccEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCC
Q 001039 1143 QKTVAVVRCIASDLERKRICSGGRNG-----LLRLWEATIN 1178 (1179)
Q Consensus 1143 ~~h~~~V~~v~fspdg~~Lasgs~Dg-----~I~vWdv~tg 1178 (1179)
......-..+.+ ++++++.||.++ .+.+||..++
T Consensus 239 ~~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 239 NMCRRNAGVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp SSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CCccccCeEEEE--CCEEEEECCcCCCcccccEEEEcCCCC
Confidence 211111122222 677888887664 4899998775
No 292
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.44 E-value=0.13 Score=56.39 Aligned_cols=222 Identities=9% Similarity=0.123 Sum_probs=146.4
Q ss_pred CeEEEEeCCCCeEEEEe-ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEE-cCCEEEE
Q 001039 944 GTVKMWDVRTDTCVATV-GRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM-DRDTVIT 1021 (1179)
Q Consensus 944 g~I~iwd~~~~~~~~~~-~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~-~~~~l~s 1021 (1179)
..|.+.|+.++...... -..+ +.-.+|..+.+|.-. ...+.++|+++...++.+.-. ..|.--.| +++.|+.
T Consensus 49 ~~VvIiDl~n~~~~~Rrpi~Ad----sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~-e~VvfWkWis~~~L~l 122 (365)
T 2xzh_A 49 AQVVIIDMNDPSNPIRRPISAD----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNTVAL 122 (365)
T ss_dssp EEEEEEETTSTTSCEEEECCCS----EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCEEEEEECSSSEEEE
T ss_pred CEEEEEECCCCCCccccccccc----eeeeCCCccEEEEec-CCeEEEechHHhhhhcceecC-CccEEEEecCCCeEEE
Confidence 47888898876543221 1222 344589888887765 679999999999988887654 45666677 6777666
Q ss_pred EeCCCcEEEEEccC-CeeeEEeecCC----cCEEEEEEecCCCEEEEEe-------CCCcEEEEEcCCCCcceEEEeecc
Q 001039 1022 GSDDWTARMWSISR-GTCDAVLACHA----GPVQCVEYSSSDRGIITGS-------SDGLLRFWENDDAGGIKCVKNVTI 1089 (1179)
Q Consensus 1022 gs~dg~I~iwd~~~-~~~~~~~~~h~----~~V~~l~~spdg~~l~sgs-------~Dg~I~iwd~~~~~~~~~~~~~~~ 1089 (1179)
.+ +..|+-|++.. ..+.+.+..|. ..|..-..+++.++++..+ -.|.+.+|..+. +.-+.+.+
T Consensus 123 VT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er----~~sQ~ieG 197 (365)
T 2xzh_A 123 VT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR----KVSQPIEG 197 (365)
T ss_dssp EE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT----TEEEEECC
T ss_pred Ec-CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc----cccceeee
Confidence 65 55799999974 45666666553 4677778899999977554 247788999886 55566778
Q ss_pred cCceEEEEecCC-----CEEEEEEC---CCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEE
Q 001039 1090 HSSAILSINAGD-----HWLGIGAA---DNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRI 1161 (1179)
Q Consensus 1090 h~~~i~sis~dg-----~~lasgs~---Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~L 1161 (1179)
|...-..+..+| .+++.+.. .+.++|-++....... ..-.....+.........+---++..|+.-..+
T Consensus 198 haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~---~~f~kk~vdi~fppea~~DFPVamqvs~kygvi 274 (365)
T 2xzh_A 198 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN---QPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVV 274 (365)
T ss_dssp SEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTC---CCCCCEEEEECCCTTCTTCCEEEEEEETTTTEE
T ss_pred eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCC---CCcccccceeeCCccccCCceEEEEecccCCEE
Confidence 877766664333 23443332 2689999985321000 000000112222233344555688888888889
Q ss_pred EEEeCCCcEEEEECCCCC
Q 001039 1162 CSGGRNGLLRLWEATINI 1179 (1179)
Q Consensus 1162 asgs~Dg~I~vWdv~tg~ 1179 (1179)
..-+.-|.|+++|+.||.
T Consensus 275 yviTK~G~ihlyDleTgt 292 (365)
T 2xzh_A 275 FLITKYGYIHLYDLETGT 292 (365)
T ss_dssp EEEETTSEEEEEETTTCC
T ss_pred EEEeCCcEEEEEEcccCc
Confidence 999999999999999984
No 293
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.42 E-value=0.0059 Score=67.59 Aligned_cols=225 Identities=13% Similarity=0.121 Sum_probs=121.5
Q ss_pred CCCEEEEEe-CC-----CcEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEEEeCC-----CcEEEEECCCCe---E
Q 001039 850 DAGFFISGS-TD-----CLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDD-----QSVLVWDKQTSQ---L 915 (1179)
Q Consensus 850 d~~~Lasgs-~D-----g~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~sgs~d-----g~I~iwd~~t~~---~ 915 (1179)
++.+++.|+ .+ ..+.+||+..........+........+...++..++.|+.+ ..+.+||..+++ -
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W 93 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVW 93 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCee
Confidence 455666666 33 368888876433333222222222222344567777777754 468999988765 3
Q ss_pred EEE--eecCCCcEEEEEEeCCCEEEEEEcC-----CeEEEEeCCCCeEEEEe--ccCCCcEEEEEEcCCCCEEEEEeCC-
Q 001039 916 LEE--LKGHDAQVSCVRMLSGERVLTASHD-----GTVKMWDVRTDTCVATV--GRCSSAVLCMEYDDSTGILAAGGRD- 985 (1179)
Q Consensus 916 ~~~--~~~h~~~V~~l~~s~~~~l~sgs~d-----g~I~iwd~~~~~~~~~~--~~~~~~v~~l~~sp~~~~l~sgs~d- 985 (1179)
... +...... .+++..++..++.|+.+ ..+.+||..+++....- ........++.+ +++.++.|+.+
T Consensus 94 ~~~~~~p~~r~~-~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~ 170 (301)
T 2vpj_A 94 YSVAPMNVRRGL-AGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDG 170 (301)
T ss_dssp EEECCCSSCCBS-CEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCS
T ss_pred EECCCCCCCccc-eeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCC
Confidence 222 2211111 22333366667777653 36889999887654332 211122222222 66777777654
Q ss_pred ----CeEEEEeCCCCceeEE--eecCCCCeEEEEEcCCEEEEEeCC-----CcEEEEEccCCeeeEEeecCCcCEEEEEE
Q 001039 986 ----AVANIWDIRAGRQMHK--FLGHTKWIRSIRMDRDTVITGSDD-----WTARMWSISRGTCDAVLACHAGPVQCVEY 1054 (1179)
Q Consensus 986 ----g~I~iwD~~~~~~~~~--~~~~~~~I~sl~~~~~~l~sgs~d-----g~I~iwd~~~~~~~~~~~~h~~~V~~l~~ 1054 (1179)
..+.+||+.+.+-... +.........+..++..++.|+.+ ..+.+||..+.+-...-..........+.
T Consensus 171 ~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~ 250 (301)
T 2vpj_A 171 LNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGAT 250 (301)
T ss_dssp SCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred CcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEE
Confidence 4688999887654332 222222334455566677777654 46899999887654332111111111112
Q ss_pred ecCCCEEEEEeCC-----CcEEEEEcCC
Q 001039 1055 SSSDRGIITGSSD-----GLLRFWENDD 1077 (1179)
Q Consensus 1055 spdg~~l~sgs~D-----g~I~iwd~~~ 1077 (1179)
.-+++.++.|+.+ ..+.+||..+
T Consensus 251 ~~~~~i~v~GG~~~~~~~~~v~~yd~~~ 278 (301)
T 2vpj_A 251 VLRGRLYAIAGYDGNSLLSSIECYDPII 278 (301)
T ss_dssp EETTEEEEECCBCSSSBEEEEEEEETTT
T ss_pred EECCEEEEEcCcCCCcccccEEEEcCCC
Confidence 2267777777755 3577888876
No 294
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.41 E-value=0.0086 Score=66.46 Aligned_cols=223 Identities=8% Similarity=0.093 Sum_probs=122.8
Q ss_pred EEEEEEc--CCeEEEEeCCCCeEEEEec--cCCCcEEEEEEcCCCCEEEEEeCC----CeEEEEeCCCCceeEE--eecC
Q 001039 936 RVLTASH--DGTVKMWDVRTDTCVATVG--RCSSAVLCMEYDDSTGILAAGGRD----AVANIWDIRAGRQMHK--FLGH 1005 (1179)
Q Consensus 936 ~l~sgs~--dg~I~iwd~~~~~~~~~~~--~~~~~v~~l~~sp~~~~l~sgs~d----g~I~iwD~~~~~~~~~--~~~~ 1005 (1179)
.++.|+. ...+..||..+++....-. .......++. -++..++.|+.+ ..+.+||..+.+-... +...
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 91 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP 91 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence 3445554 3678999998876543221 1111222222 356677777754 6788999988754322 2222
Q ss_pred CCCeEEEEEcCCEEEEEeCC------CcEEEEEccCCeeeEEeecC--CcCEEEEEEecCCCEEEEEeC---------CC
Q 001039 1006 TKWIRSIRMDRDTVITGSDD------WTARMWSISRGTCDAVLACH--AGPVQCVEYSSSDRGIITGSS---------DG 1068 (1179)
Q Consensus 1006 ~~~I~sl~~~~~~l~sgs~d------g~I~iwd~~~~~~~~~~~~h--~~~V~~l~~spdg~~l~sgs~---------Dg 1068 (1179)
......+..++..++.|+.+ ..+.+||..+.+-...-... ...-..+ .-+++.++.|+. -.
T Consensus 92 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~ 169 (306)
T 3ii7_A 92 RDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMV--EANGLIYVCGGSLGNNVSGRVLN 169 (306)
T ss_dssp CBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEE--EETTEEEEECCEESCTTTCEECC
T ss_pred ccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEE--EECCEEEEECCCCCCCCcccccc
Confidence 23334445566677777755 45889998887643331111 1111222 235667777663 34
Q ss_pred cEEEEEcCCCCcceEEEeecccCceEEEEecCCCEEEEEECC-----CcEEEEeCCCCCcCcccCCCCccccceeeeecC
Q 001039 1069 LLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIGAAD-----NSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQ 1143 (1179)
Q Consensus 1069 ~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~lasgs~D-----g~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~ 1143 (1179)
.+.+||..+. ....+............+..++++++.|+.+ ..+.+||..+. .|..+....
T Consensus 170 ~~~~yd~~~~-~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~-------------~W~~~~~~p 235 (306)
T 3ii7_A 170 SCEVYDPATE-TWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLN-------------EWKMVSPMP 235 (306)
T ss_dssp CEEEEETTTT-EEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTT-------------EEEECCCCS
T ss_pred eEEEeCCCCC-eEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCC-------------cEEECCCCC
Confidence 5889998873 2444433322222223334477777777654 46888888743 244433322
Q ss_pred CCcccEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCC
Q 001039 1144 KTVAVVRCIASDLERKRICSGGRN-----GLLRLWEATIN 1178 (1179)
Q Consensus 1144 ~h~~~V~~v~fspdg~~Lasgs~D-----g~I~vWdv~tg 1178 (1179)
.......++.+ ++++++.||.+ ..+.+||..++
T Consensus 236 ~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 236 WKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp CCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred CCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 22222233333 67788888854 46888888775
No 295
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.41 E-value=0.037 Score=65.25 Aligned_cols=252 Identities=6% Similarity=-0.004 Sum_probs=143.2
Q ss_pred cEEEEEEeC--CCEEEEEEc-CCeEEEEeCCCCeEEEEeccC---CCcEEEEEE-------cCCCCEEEEEeCCC-----
Q 001039 925 QVSCVRMLS--GERVLTASH-DGTVKMWDVRTDTCVATVGRC---SSAVLCMEY-------DDSTGILAAGGRDA----- 986 (1179)
Q Consensus 925 ~V~~l~~s~--~~~l~sgs~-dg~I~iwd~~~~~~~~~~~~~---~~~v~~l~~-------sp~~~~l~sgs~dg----- 986 (1179)
....|++.+ ++.|+++.. .+.|++.|..++......... ......++| +++++.++++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 456788884 445555544 477999999888776555332 235899999 99999777766554
Q ss_pred --eEEEEeCCC-Ccee-----EEeecCCCCeEEEEEcC---CEEEEEeCCCcEEEEEcc-------CCee----------
Q 001039 987 --VANIWDIRA-GRQM-----HKFLGHTKWIRSIRMDR---DTVITGSDDWTARMWSIS-------RGTC---------- 1038 (1179)
Q Consensus 987 --~I~iwD~~~-~~~~-----~~~~~~~~~I~sl~~~~---~~l~sgs~dg~I~iwd~~-------~~~~---------- 1038 (1179)
.|.+++... +... ..+.. ......++.++ .++++-..++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 366776443 2221 12211 12334566654 356666688889999987 5543
Q ss_pred -eEE-ee-cCCcCEEEEEEecCCCEEEEE-eCCCcEEEEEcCCCCc-c---eEEEeecccC-------------ce--EE
Q 001039 1039 -DAV-LA-CHAGPVQCVEYSSSDRGIITG-SSDGLLRFWENDDAGG-I---KCVKNVTIHS-------------SA--IL 1095 (1179)
Q Consensus 1039 -~~~-~~-~h~~~V~~l~~spdg~~l~sg-s~Dg~I~iwd~~~~~~-~---~~~~~~~~h~-------------~~--i~ 1095 (1179)
... +. +.......++|+|+|++|..+ +..+.|+.++.+.... . ..+....+.. .+ ..
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv 378 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV 378 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence 112 22 223456899999999965554 4567788866543211 1 1121110100 11 23
Q ss_pred EEe-------cCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCcc-----c--cceee-eecCCCcccEEEEEEcCC-CC
Q 001039 1096 SIN-------AGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKM-----S--GWQLY-RTPQKTVAVVRCIASDLE-RK 1159 (1179)
Q Consensus 1096 sis-------~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~-----~--~~~~~-~~~~~h~~~V~~v~fspd-g~ 1159 (1179)
.+. .+|.+.++-..++.|+.++. ++.+..+.+.|... . .+.-- ......-..-..|+++++ |.
T Consensus 379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~ 457 (496)
T 3kya_A 379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEM 457 (496)
T ss_dssp EEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTE
T ss_pred EEccccccccCCCeEEEEECCCCEEEEEeC-CCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCE
Confidence 343 45666666667788888884 33343333332210 0 00000 000112234689999997 77
Q ss_pred EEEEEeCCCcEEEEECCCC
Q 001039 1160 RICSGGRNGLLRLWEATIN 1178 (1179)
Q Consensus 1160 ~Lasgs~Dg~I~vWdv~tg 1178 (1179)
+.++=..+..||.++++..
T Consensus 458 lyVaD~~N~rIrki~~~~~ 476 (496)
T 3kya_A 458 FYVHDQVGHTIRTISMEQE 476 (496)
T ss_dssp EEEEETTTTEEEEEEECCC
T ss_pred EEEEeCCCCEEEEEECCCC
Confidence 6666667789999988654
No 296
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.36 E-value=0.2 Score=56.95 Aligned_cols=224 Identities=9% Similarity=0.117 Sum_probs=148.1
Q ss_pred CCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEE-cCCEEEE
Q 001039 943 DGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM-DRDTVIT 1021 (1179)
Q Consensus 943 dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~-~~~~l~s 1021 (1179)
+..|.|.|+.++..+....- ..-+.-.+|..+.+|.-. ...+.++|+.+...++.+.-.. .|.--.| +++.++.
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi---~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~~~l~l 121 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVAL 121 (494)
T ss_dssp CCEEEEEETTSTTSCEEEEC---CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEETTEEEE
T ss_pred CCeEEEEECCCCCcceeccc---ccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCCCeEEE
Confidence 34788888887654322111 112455788888887765 6899999999999988876655 4555566 7777776
Q ss_pred EeCCCcEEEEEccC-CeeeEEeecC----CcCEEEEEEecCCCEEEEEe-------CCCcEEEEEcCCCCcceEEEeecc
Q 001039 1022 GSDDWTARMWSISR-GTCDAVLACH----AGPVQCVEYSSSDRGIITGS-------SDGLLRFWENDDAGGIKCVKNVTI 1089 (1179)
Q Consensus 1022 gs~dg~I~iwd~~~-~~~~~~~~~h----~~~V~~l~~spdg~~l~sgs-------~Dg~I~iwd~~~~~~~~~~~~~~~ 1089 (1179)
.+ +..|+-|++.. ..+.+.+..| ...|..-..+++.++++..+ -.|.+.+|..+. +.-..+.+
T Consensus 122 VT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er----~~sQ~ieG 196 (494)
T 1bpo_A 122 VT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR----KVSQPIEG 196 (494)
T ss_dssp EC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT----CCEEEECC
T ss_pred Ec-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc----cccchhee
Confidence 65 56899999974 3566666655 34677778899999987544 247788999886 44556778
Q ss_pred cCceEEEEecCC-----CEEEEEECC---CcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEE
Q 001039 1090 HSSAILSINAGD-----HWLGIGAAD---NSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRI 1161 (1179)
Q Consensus 1090 h~~~i~sis~dg-----~~lasgs~D---g~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~L 1161 (1179)
|...-..+..+| .+++.+... +.++|-++....... ..-.....+....+....+--.++..|+.-..+
T Consensus 197 haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~---~~f~kk~vdv~fppe~~~DFPvamqvs~kygvi 273 (494)
T 1bpo_A 197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN---QPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVV 273 (494)
T ss_dssp SEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTC---CCCCCEEEECCCCTTSTTCCEEEEEEETTTTEE
T ss_pred eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCC---CCccceeeeeeCCcccccCceeEEEecccCCEE
Confidence 877776664433 244444443 789999985321000 000000111222223334555688889988899
Q ss_pred EEEeCCCcEEEEECCCCC
Q 001039 1162 CSGGRNGLLRLWEATINI 1179 (1179)
Q Consensus 1162 asgs~Dg~I~vWdv~tg~ 1179 (1179)
..-+.-|.|+++|+.||.
T Consensus 274 yviTK~G~i~lyDleTgt 291 (494)
T 1bpo_A 274 FLITKYGYIHLYDLETGT 291 (494)
T ss_dssp EEEETTSEEEEEETTTCC
T ss_pred EEEecCceEEEEecccce
Confidence 999999999999999984
No 297
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.34 E-value=0.018 Score=63.80 Aligned_cols=222 Identities=9% Similarity=0.098 Sum_probs=122.0
Q ss_pred CEEEEEeC--CCcEEEEECCCCeEEEE--eecCCCcEEEEEEeCCCEEEEEEcC----CeEEEEeCCCCeEEEEecc--C
Q 001039 894 GKVVSGSD--DQSVLVWDKQTSQLLEE--LKGHDAQVSCVRMLSGERVLTASHD----GTVKMWDVRTDTCVATVGR--C 963 (1179)
Q Consensus 894 ~~l~sgs~--dg~I~iwd~~t~~~~~~--~~~h~~~V~~l~~s~~~~l~sgs~d----g~I~iwd~~~~~~~~~~~~--~ 963 (1179)
..++.|+. ...+.+||..+++-... +...... .+++..++..++.|+.+ ..+.+||..+++....-.. .
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 91 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRD-AACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP 91 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBS-CEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccce-eEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence 34455554 35788999988764432 1111111 22233466677777755 6789999988865443221 1
Q ss_pred CCcEEEEEEcCCCCEEEEEeCC------CeEEEEeCCCCceeEE--eecCCCCeEEEEEcCCEEEEEeC---------CC
Q 001039 964 SSAVLCMEYDDSTGILAAGGRD------AVANIWDIRAGRQMHK--FLGHTKWIRSIRMDRDTVITGSD---------DW 1026 (1179)
Q Consensus 964 ~~~v~~l~~sp~~~~l~sgs~d------g~I~iwD~~~~~~~~~--~~~~~~~I~sl~~~~~~l~sgs~---------dg 1026 (1179)
......+.+ +++.++.|+.+ ..+.+||..+.+-... +........++..++..++.|+. -.
T Consensus 92 r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 169 (306)
T 3ii7_A 92 RDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLN 169 (306)
T ss_dssp CBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECC
T ss_pred ccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccc
Confidence 122222222 66777777755 4689999987654332 22222233344456666666653 34
Q ss_pred cEEEEEccCCeeeEEeecCCcCE-EEEEEecCCCEEEEEeCC-----CcEEEEEcCCCCcceEEEeecccCceEEEEecC
Q 001039 1027 TARMWSISRGTCDAVLACHAGPV-QCVEYSSSDRGIITGSSD-----GLLRFWENDDAGGIKCVKNVTIHSSAILSINAG 1100 (1179)
Q Consensus 1027 ~I~iwd~~~~~~~~~~~~h~~~V-~~l~~spdg~~l~sgs~D-----g~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~d 1100 (1179)
.+.+||..+.+-...-....... .+++. -+++.++.|+.+ ..+.+||..+. ....+..+........++..+
T Consensus 170 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~~~~-~W~~~~~~p~~r~~~~~~~~~ 247 (306)
T 3ii7_A 170 SCEVYDPATETWTELCPMIEARKNHGLVF-VKDKIFAVGGQNGLGGLDNVEYYDIKLN-EWKMVSPMPWKGVTVKCAAVG 247 (306)
T ss_dssp CEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTEEBCCEEEEETTTT-EEEECCCCSCCBSCCEEEEET
T ss_pred eEEEeCCCCCeEEECCCccchhhcceEEE-ECCEEEEEeCCCCCCCCceEEEeeCCCC-cEEECCCCCCCccceeEEEEC
Confidence 58899998875433321111111 12222 267777777653 45889998873 244443333222222333447
Q ss_pred CCEEEEEECC-----CcEEEEeCCC
Q 001039 1101 DHWLGIGAAD-----NSMSLFHRPQ 1120 (1179)
Q Consensus 1101 g~~lasgs~D-----g~I~iwd~~~ 1120 (1179)
+++++.|+.+ ..+.+||..+
T Consensus 248 ~~i~v~GG~~~~~~~~~~~~yd~~~ 272 (306)
T 3ii7_A 248 SIVYVLAGFQGVGRLGHILEYNTET 272 (306)
T ss_dssp TEEEEEECBCSSSBCCEEEEEETTT
T ss_pred CEEEEEeCcCCCeeeeeEEEEcCCC
Confidence 8888888754 5688888864
No 298
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.32 E-value=0.0094 Score=66.00 Aligned_cols=225 Identities=12% Similarity=0.095 Sum_probs=118.4
Q ss_pred CCEEEEEeCC----CcEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEEEeCC-----CcEEEEECCCCeEEEEeec
Q 001039 851 AGFFISGSTD----CLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDD-----QSVLVWDKQTSQLLEELKG 921 (1179)
Q Consensus 851 ~~~Lasgs~D----g~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~sgs~d-----g~I~iwd~~t~~~~~~~~~ 921 (1179)
+.+++.|+.+ ..+.+||+..........+......-.+...++..++.|+.+ ..+.+||..+.+-...-..
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~ 95 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANM 95 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCC
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCC
Confidence 4455666543 357888876433322222221111112233466677777654 3588999988764433211
Q ss_pred CCC-cEEEEEEeCCCEEEEEEcCC-----eEEEEeCCCCeEEEEec--cCCCcEEEEEEcCCCCEEEEEeCC-------C
Q 001039 922 HDA-QVSCVRMLSGERVLTASHDG-----TVKMWDVRTDTCVATVG--RCSSAVLCMEYDDSTGILAAGGRD-------A 986 (1179)
Q Consensus 922 h~~-~V~~l~~s~~~~l~sgs~dg-----~I~iwd~~~~~~~~~~~--~~~~~v~~l~~sp~~~~l~sgs~d-------g 986 (1179)
... .-.+++..++..++.|+.++ .+.+||..+.+....-. .......++. -+++.++.|+.+ .
T Consensus 96 p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~ 173 (302)
T 2xn4_A 96 RDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV--VGGLLYAVGGYDVASRQCLS 173 (302)
T ss_dssp SSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEETTTTEECC
T ss_pred CccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE--ECCEEEEEeCCCCCCCcccc
Confidence 111 11223334677777777653 57889998876544321 1111122222 256666666542 4
Q ss_pred eEEEEeCCCCceeEE--eecCCCCeEEEEEcCCEEEEEeCC-----CcEEEEEccCCeeeEEeecCCcCEEEEEEecCCC
Q 001039 987 VANIWDIRAGRQMHK--FLGHTKWIRSIRMDRDTVITGSDD-----WTARMWSISRGTCDAVLACHAGPVQCVEYSSSDR 1059 (1179)
Q Consensus 987 ~I~iwD~~~~~~~~~--~~~~~~~I~sl~~~~~~l~sgs~d-----g~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~ 1059 (1179)
.+.+||+.+.+-... +.........+..++.+++.|+.+ ..+.+||..+.+-...-..........+..-+++
T Consensus 174 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~ 253 (302)
T 2xn4_A 174 TVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGL 253 (302)
T ss_dssp CEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTE
T ss_pred EEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEECCE
Confidence 588999987654332 222222334445566677777654 3688999987754432211111111111223677
Q ss_pred EEEEEeCCC-----cEEEEEcCC
Q 001039 1060 GIITGSSDG-----LLRFWENDD 1077 (1179)
Q Consensus 1060 ~l~sgs~Dg-----~I~iwd~~~ 1077 (1179)
.++.|+.++ .+.+||..+
T Consensus 254 i~v~GG~~~~~~~~~v~~yd~~~ 276 (302)
T 2xn4_A 254 LYVVGGDDGSCNLASVEYYNPTT 276 (302)
T ss_dssp EEEECCBCSSSBCCCEEEEETTT
T ss_pred EEEECCcCCCcccccEEEEcCCC
Confidence 777777553 477888776
No 299
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.32 E-value=0.29 Score=53.57 Aligned_cols=253 Identities=9% Similarity=0.123 Sum_probs=162.6
Q ss_pred CCCcEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEeCCCEEE
Q 001039 859 TDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVL 938 (1179)
Q Consensus 859 ~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s~~~~l~ 938 (1179)
.+..|.|-|+........+...+ ...| ++|..+.+|.-. ..++.++|+++.+.++...-. ..|.--.|.+.+.++
T Consensus 47 ~~~~VvIiDl~n~~~~~Rrpi~A-dsAI--MnP~~~ViALra-g~~LQiFnletK~klks~~~~-e~VvfWkWis~~~L~ 121 (365)
T 2xzh_A 47 EQAQVVIIDMNDPSNPIRRPISA-DSAI--MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNTVA 121 (365)
T ss_dssp TEEEEEEEETTSTTSCEEEECCC-SEEE--ECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCEEEEEECSSSEEE
T ss_pred CCCEEEEEECCCCCCcccccccc-ceee--eCCCccEEEEec-CCeEEEechHHhhhhcceecC-CccEEEEecCCCeEE
Confidence 34478888887443332222222 2222 488888777766 689999999999998887754 566666777777777
Q ss_pred EEEcCCeEEEEeCCC-CeEEEEeccC----CCcEEEEEEcCCCCEEEEEeC-------CCeEEEEeCCCCceeEEeecCC
Q 001039 939 TASHDGTVKMWDVRT-DTCVATVGRC----SSAVLCMEYDDSTGILAAGGR-------DAVANIWDIRAGRQMHKFLGHT 1006 (1179)
Q Consensus 939 sgs~dg~I~iwd~~~-~~~~~~~~~~----~~~v~~l~~sp~~~~l~sgs~-------dg~I~iwD~~~~~~~~~~~~~~ 1006 (1179)
..+. ..|.-|++.. ..+.+.+..| ...|..-..+++.+|++..+- .|.+.+|..+.+ .-+.+.||.
T Consensus 122 lVT~-taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGha 199 (365)
T 2xzh_A 122 LVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHA 199 (365)
T ss_dssp EEES-SEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSE
T ss_pred EEcC-CcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccceeeeee
Confidence 6664 5799999975 3455666544 456888888999998876552 367889987654 445567777
Q ss_pred CCeEEEEEcCC-----EEEEEeC---CCcEEEEEccCC---ee-----eEE-e-e--cCCcCEEEEEEecCCCEEEEEeC
Q 001039 1007 KWIRSIRMDRD-----TVITGSD---DWTARMWSISRG---TC-----DAV-L-A--CHAGPVQCVEYSSSDRGIITGSS 1066 (1179)
Q Consensus 1007 ~~I~sl~~~~~-----~l~sgs~---dg~I~iwd~~~~---~~-----~~~-~-~--~h~~~V~~l~~spdg~~l~sgs~ 1066 (1179)
..-..+..+++ .++.+.. .+++++-++... .. ... + . ...+-..++..|+.-..+..-+.
T Consensus 200 a~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK 279 (365)
T 2xzh_A 200 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK 279 (365)
T ss_dssp EEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEET
T ss_pred eeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeC
Confidence 66656655543 2232222 258999988442 11 111 1 1 12445678888998889999999
Q ss_pred CCcEEEEEcCCCCcceEEEeecccCceEEEE--ecCCCEEEEEECCCcEEEEeCCCC
Q 001039 1067 DGLLRFWENDDAGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQE 1121 (1179)
Q Consensus 1067 Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~si--s~dg~~lasgs~Dg~I~iwd~~~~ 1121 (1179)
-|.+++||+.+ ..++..-+-....|..- +....=+++-...|.|.--.+...
T Consensus 280 ~G~ihlyDleT---gt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 280 YGYIHLYDLET---GTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp TSEEEEEETTT---CCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTT
T ss_pred CcEEEEEEccc---CcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEECcc
Confidence 99999999999 45555544444444332 233333444446666666665543
No 300
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.30 E-value=0.016 Score=73.08 Aligned_cols=183 Identities=11% Similarity=0.073 Sum_probs=107.7
Q ss_pred EEe-cCCCEEEEEeC-CC----cEEEEECCCC-eEEE-EeecCCCcEEEEEEe-CCCEEEEEEcC-----CeEEEEeCCC
Q 001039 888 AIN-SDRGKVVSGSD-DQ----SVLVWDKQTS-QLLE-ELKGHDAQVSCVRML-SGERVLTASHD-----GTVKMWDVRT 953 (1179)
Q Consensus 888 ~~s-~d~~~l~sgs~-dg----~I~iwd~~t~-~~~~-~~~~h~~~V~~l~~s-~~~~l~sgs~d-----g~I~iwd~~~ 953 (1179)
++| |||++++.+.. +| +|+++|+.++ +.+. .+. .....+.|+ +++.|+....+ ..|..+++.+
T Consensus 180 ~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt 256 (751)
T 2xe4_A 180 KPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGK 256 (751)
T ss_dssp EECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTS
T ss_pred EecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCC
Confidence 679 99998886543 23 5999999998 6321 111 113457788 66777766654 3688888877
Q ss_pred CeE--EEEec-cCCCcEEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCc-ee--EEee-cCCCCeEEEEE-cCCEEEEE
Q 001039 954 DTC--VATVG-RCSSAVLCMEYDDSTGILAAGGR---DAVANIWDIRAGR-QM--HKFL-GHTKWIRSIRM-DRDTVITG 1022 (1179)
Q Consensus 954 ~~~--~~~~~-~~~~~v~~l~~sp~~~~l~sgs~---dg~I~iwD~~~~~-~~--~~~~-~~~~~I~sl~~-~~~~l~sg 1022 (1179)
+.. ...+. ........+.|+|||++|+..+. ...|.++|+.++. .. ..+. .......++.| .++.++..
T Consensus 257 ~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~ 336 (751)
T 2xe4_A 257 LQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVIL 336 (751)
T ss_dssp CGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEE
T ss_pred CchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEE
Confidence 642 22222 22345678899999999887663 3478899998762 22 3332 34455666663 46655444
Q ss_pred e-CC----CcEEEEEccCCeeeEE-eecCCc--CEEEEEEecCCCE-EEEEeCCCcEE--EEEc
Q 001039 1023 S-DD----WTARMWSISRGTCDAV-LACHAG--PVQCVEYSSSDRG-IITGSSDGLLR--FWEN 1075 (1179)
Q Consensus 1023 s-~d----g~I~iwd~~~~~~~~~-~~~h~~--~V~~l~~spdg~~-l~sgs~Dg~I~--iwd~ 1075 (1179)
+ .+ ..|..+|+.++..... +..+.. .+..+.+. ++. +++...+|..+ ++|+
T Consensus 337 t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 337 TNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp ECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEEEEC
T ss_pred eCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEEec
Confidence 3 33 3577777765322222 233433 34455554 444 45566677644 4554
No 301
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.29 E-value=0.074 Score=57.02 Aligned_cols=194 Identities=6% Similarity=0.112 Sum_probs=123.6
Q ss_pred EeccccccEEE--EecCCCEEE-EEeCCCcEEEEECCCCeEEEEeec-CCCcEEEEEEeCCCEEEEEE-cCCeEEEEeCC
Q 001039 878 TLKGHTRTVRA--INSDRGKVV-SGSDDQSVLVWDKQTSQLLEELKG-HDAQVSCVRMLSGERVLTAS-HDGTVKMWDVR 952 (1179)
Q Consensus 878 ~l~~h~~~v~~--~s~d~~~l~-sgs~dg~I~iwd~~t~~~~~~~~~-h~~~V~~l~~s~~~~l~sgs-~dg~I~iwd~~ 952 (1179)
.+.+-...+.. ++++++.|+ +...++.|...|.. ++.++.+.- .....-.+++..++.++.++ .++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 45555556664 467666555 46778899999988 888887742 23567788888555554444 56788888876
Q ss_pred CCeE---EEEec------cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC---CCceeEEee-------cCCCCeEEEE
Q 001039 953 TDTC---VATVG------RCSSAVLCMEYDDSTGILAAGGRDAVANIWDIR---AGRQMHKFL-------GHTKWIRSIR 1013 (1179)
Q Consensus 953 ~~~~---~~~~~------~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~---~~~~~~~~~-------~~~~~I~sl~ 1013 (1179)
.... +.... ..+.....++|+|.++.|.++.......+|.++ ....+.... .+...+.+++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 5432 22221 134457899999999877777765544444443 111222221 1233567888
Q ss_pred EcCC---EEEEEeCCCcEEEEEccCCeeeEEeecCC---------cCEEEEEEecCCCEEEEEeCCCcEEEEE
Q 001039 1014 MDRD---TVITGSDDWTARMWSISRGTCDAVLACHA---------GPVQCVEYSSSDRGIITGSSDGLLRFWE 1074 (1179)
Q Consensus 1014 ~~~~---~l~sgs~dg~I~iwd~~~~~~~~~~~~h~---------~~V~~l~~spdg~~l~sgs~Dg~I~iwd 1074 (1179)
+++. +++....++.+..+|.. |+.+..+.-.. ..-..|+|.++|+..++ ++-+.++.+.
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFT 250 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEE
Confidence 8654 67777788889999965 55665554322 25789999999985555 6666655554
No 302
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.22 E-value=0.47 Score=53.98 Aligned_cols=252 Identities=10% Similarity=0.131 Sum_probs=162.7
Q ss_pred CCcEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEeCCCEEEE
Q 001039 860 DCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLT 939 (1179)
Q Consensus 860 Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s~~~~l~s 939 (1179)
+..|.|-|+........+...+ ... -++|..+.++.-. ..++.|+|+++.+.++...-.+ .|.--.|.+.+.++.
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~A-dsA--IMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~~~l~l 121 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPISA-DSA--IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVAL 121 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECCC-SEE--EECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEETTEEEE
T ss_pred CCeEEEEECCCCCcceeccccc-cee--eeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCCCeEEE
Confidence 3478888877433332222222 112 2578887777665 6899999999999988877544 455556667777766
Q ss_pred EEcCCeEEEEeCCC-CeEEEEeccC----CCcEEEEEEcCCCCEEEEEe-------CCCeEEEEeCCCCceeEEeecCCC
Q 001039 940 ASHDGTVKMWDVRT-DTCVATVGRC----SSAVLCMEYDDSTGILAAGG-------RDAVANIWDIRAGRQMHKFLGHTK 1007 (1179)
Q Consensus 940 gs~dg~I~iwd~~~-~~~~~~~~~~----~~~v~~l~~sp~~~~l~sgs-------~dg~I~iwD~~~~~~~~~~~~~~~ 1007 (1179)
.+ +..|.-|++.. ..+.+.+..| ...|..-..+++.+|++..+ -.|.+.+|..+.+ .-+.+.||..
T Consensus 122 VT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa 199 (494)
T 1bpo_A 122 VT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAA 199 (494)
T ss_dssp EC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEE
T ss_pred Ec-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeee
Confidence 65 46899999974 3455666544 45788888899999987654 2467889987654 4456778877
Q ss_pred CeEEEEEcCC-----EEEEEeCC---CcEEEEEccCC---e-----eeEEe--e--cCCcCEEEEEEecCCCEEEEEeCC
Q 001039 1008 WIRSIRMDRD-----TVITGSDD---WTARMWSISRG---T-----CDAVL--A--CHAGPVQCVEYSSSDRGIITGSSD 1067 (1179)
Q Consensus 1008 ~I~sl~~~~~-----~l~sgs~d---g~I~iwd~~~~---~-----~~~~~--~--~h~~~V~~l~~spdg~~l~sgs~D 1067 (1179)
.-..+..+++ .++.+... +.+++.++... . ....+ . ...+-..++..|+....+..-+.-
T Consensus 200 ~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~ 279 (494)
T 1bpo_A 200 SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKY 279 (494)
T ss_dssp EEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETT
T ss_pred eeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecC
Confidence 7766766554 33434332 78999998543 1 11111 1 123456788899999999999999
Q ss_pred CcEEEEEcCCCCcceEEEeecccCceEEEE--ecCCCEEEEEECCCcEEEEeCCCC
Q 001039 1068 GLLRFWENDDAGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQE 1121 (1179)
Q Consensus 1068 g~I~iwd~~~~~~~~~~~~~~~h~~~i~si--s~dg~~lasgs~Dg~I~iwd~~~~ 1121 (1179)
|.++++|+.+ ..++..-+-....|..- +....=++.....|.|.--.+...
T Consensus 280 G~i~lyDleT---gt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 280 GYIHLYDLET---GTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp SEEEEEETTT---CCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred ceEEEEeccc---ceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 9999999999 45555444444444332 333334444446676666666544
No 303
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.19 E-value=0.8 Score=56.07 Aligned_cols=153 Identities=7% Similarity=-0.066 Sum_probs=82.9
Q ss_pred CeEEEEEc---CCEEEEEeCCCcEEEEEccCCeeeEEe-ecCCcCEEEEEEec-CCCEEEEEeCCC--cEEEEEcCCCCc
Q 001039 1008 WIRSIRMD---RDTVITGSDDWTARMWSISRGTCDAVL-ACHAGPVQCVEYSS-SDRGIITGSSDG--LLRFWENDDAGG 1080 (1179)
Q Consensus 1008 ~I~sl~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~-~~h~~~V~~l~~sp-dg~~l~sgs~Dg--~I~iwd~~~~~~ 1080 (1179)
.+..++++ +++.++-+..+.|.+.+++ |+....+ ........+++++| .|.++++-.... .|...+++...
T Consensus 390 ~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~- 467 (628)
T 4a0p_A 390 QPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTE- 467 (628)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCS-
T ss_pred CcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCC-
Confidence 45667765 2355666677889999876 4444333 33456789999999 455555543332 45555555422
Q ss_pred ceEEEeecccCceEEEEecCCCEEEEEEC-CCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCC
Q 001039 1081 IKCVKNVTIHSSAILSINAGDHWLGIGAA-DNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERK 1159 (1179)
Q Consensus 1081 ~~~~~~~~~h~~~i~sis~dg~~lasgs~-Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~ 1159 (1179)
...+..-......-++++++++.|..+.. .+.|...++.+... +.+.. .......+++... +.
T Consensus 468 ~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r-------------~~~~~--~~~~~P~glav~~-~~ 531 (628)
T 4a0p_A 468 REVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANR-------------IVLED--SNILQPVGLTVFE-NW 531 (628)
T ss_dssp CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------------EEEEC--SSCSCEEEEEEET-TE
T ss_pred cEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCce-------------EEEEc--CCCCCcEEEEEEC-CE
Confidence 22232211112223556777666666654 57888888853211 11111 1122345666644 44
Q ss_pred EEEEEeCCCcEEEEECCCC
Q 001039 1160 RICSGGRNGLLRLWEATIN 1178 (1179)
Q Consensus 1160 ~Lasgs~Dg~I~vWdv~tg 1178 (1179)
...+-...+.|...|..+|
T Consensus 532 ly~tD~~~~~i~~~~k~~G 550 (628)
T 4a0p_A 532 LYWIDKQQQMIEKIDMTGR 550 (628)
T ss_dssp EEEEETTTTEEEEEETTSS
T ss_pred EEEEECCCCeEEEEECcCC
Confidence 4444445566666666554
No 304
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.18 E-value=0.076 Score=59.22 Aligned_cols=181 Identities=11% Similarity=0.277 Sum_probs=118.5
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEeC-----CCE--EEEEE--c--CCeEEEEeC--CCCeEE
Q 001039 891 SDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLS-----GER--VLTAS--H--DGTVKMWDV--RTDTCV 957 (1179)
Q Consensus 891 ~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s~-----~~~--l~sgs--~--dg~I~iwd~--~~~~~~ 957 (1179)
|....++.....+-+.+||+ +|+.+..+.. +.++.+..-+ +.. ++.++ . +++|.+|++ .+++ +
T Consensus 38 p~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l 113 (355)
T 3amr_A 38 PQNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-L 113 (355)
T ss_dssp GGGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-E
T ss_pred CCccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-e
Confidence 34566777778889999999 7999888864 4566655542 222 33333 3 578999966 4443 4
Q ss_pred EEecc------CC-CcEEEEEE--cCC-CC-EEEEEeCCCeEEEEeCC-------CCceeEEeecCCCCeEEEEEcC--C
Q 001039 958 ATVGR------CS-SAVLCMEY--DDS-TG-ILAAGGRDAVANIWDIR-------AGRQMHKFLGHTKWIRSIRMDR--D 1017 (1179)
Q Consensus 958 ~~~~~------~~-~~v~~l~~--sp~-~~-~l~sgs~dg~I~iwD~~-------~~~~~~~~~~~~~~I~sl~~~~--~ 1017 (1179)
..+.. .. ..+..+++ ++. +. ++++...+|.+..|++. +++.++++... +.+-.+..++ .
T Consensus 114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g 192 (355)
T 3amr_A 114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYG 192 (355)
T ss_dssp EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTT
T ss_pred eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCCC
Confidence 44422 11 45556666 774 43 67788889999999883 33556666443 4677777764 4
Q ss_pred EEEEEeCCCcEEEEEcc-----CCeeeEEee-cC-CcCEEEEEEe--cCCC-EEEEEe-CCCcEEEEEcC
Q 001039 1018 TVITGSDDWTARMWSIS-----RGTCDAVLA-CH-AGPVQCVEYS--SSDR-GIITGS-SDGLLRFWEND 1076 (1179)
Q Consensus 1018 ~l~sgs~dg~I~iwd~~-----~~~~~~~~~-~h-~~~V~~l~~s--pdg~-~l~sgs-~Dg~I~iwd~~ 1076 (1179)
.|+.+-++.-|..+|.+ +++.+..+. ++ ...+..|++- ++++ +|++++ .+++..+||..
T Consensus 193 ~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 193 RLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred eEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 89999998777666754 344555442 22 2468888884 5555 666665 67789999997
No 305
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.17 E-value=0.26 Score=61.97 Aligned_cols=208 Identities=11% Similarity=-0.034 Sum_probs=127.8
Q ss_pred ccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCC--ceeEEEecc--ccccEEEEecCCCEEEE-Ee
Q 001039 826 HAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRG--SELRATLKG--HTRTVRAINSDRGKVVS-GS 900 (1179)
Q Consensus 826 H~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~--~~~~~~l~~--h~~~v~~~s~d~~~l~s-gs 900 (1179)
....+.+|+|.+ .++.++++-...+.|+.+++.... ......+.. ....-.++.+.++.|+. -.
T Consensus 422 ~~~~~~gl~~d~-----------~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~ 490 (791)
T 3m0c_C 422 NLRNVVALDTEV-----------ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS 490 (791)
T ss_dssp SCSSEEEEEEET-----------TTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEET
T ss_pred CCCceEEEeecc-----------cCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEec
Confidence 345667888872 345566666667889999876211 112222221 22223467776755554 45
Q ss_pred CCCcEEEEECCCCeEEEEeecCCCcEEEEEEeC-CCEEEEEEc-C-CeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCC
Q 001039 901 DDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLS-GERVLTASH-D-GTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTG 977 (1179)
Q Consensus 901 ~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s~-~~~l~sgs~-d-g~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~ 977 (1179)
..+.|.+.+++.......+.........|++.+ +..|+.+.. + +.|...++........+...-.....|++++.+.
T Consensus 491 ~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~ 570 (791)
T 3m0c_C 491 VLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSG 570 (791)
T ss_dssp TTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTT
T ss_pred CCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCC
Confidence 678999999886554444444455678899883 455555543 3 7899999875554444444446789999998777
Q ss_pred EEEEEe-CCCeEEEEeCCCCceeEEeec--CCCCeEEEEEcCCEEEEE-eCCCcEEEEEccCCeeeEEeec
Q 001039 978 ILAAGG-RDAVANIWDIRAGRQMHKFLG--HTKWIRSIRMDRDTVITG-SDDWTARMWSISRGTCDAVLAC 1044 (1179)
Q Consensus 978 ~l~sgs-~dg~I~iwD~~~~~~~~~~~~--~~~~I~sl~~~~~~l~sg-s~dg~I~iwd~~~~~~~~~~~~ 1044 (1179)
.|+.+. ..+.|...|+........+.. .-....+|++.++.|+.+ ...+.|...|..+|+.+..+..
T Consensus 571 ~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG~~~~~l~~ 641 (791)
T 3m0c_C 571 RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAE 641 (791)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred eEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCCcceEEeec
Confidence 666665 456899999865444333332 223456777766655544 4567888888777776666543
No 306
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.17 E-value=0.049 Score=63.73 Aligned_cols=223 Identities=10% Similarity=0.067 Sum_probs=120.6
Q ss_pred C-CCCEEEEEeCCCcEEEEcCCCCCceeEEEecccc-ccEEEEecCCCEEEEEeCC-C----cEEEEECCCCeEE--EEe
Q 001039 849 E-DAGFFISGSTDCLVKIWDPSLRGSELRATLKGHT-RTVRAINSDRGKVVSGSDD-Q----SVLVWDKQTSQLL--EEL 919 (1179)
Q Consensus 849 ~-d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~-~~v~~~s~d~~~l~sgs~d-g----~I~iwd~~t~~~~--~~~ 919 (1179)
| ++..|..+...+.|+.+|.. +..+......-. ..-.++++++++|+.+... + .+...+. .+... ..+
T Consensus 146 p~~~g~Lyv~d~~~~I~~id~~--~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l 222 (430)
T 3tc9_A 146 PKNHNHLYLVGEQHPTRLIDFE--KEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITEL 222 (430)
T ss_dssp TTEEEEEEEEEBTEEEEEEETT--TTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEE
T ss_pred CCCCCeEEEEeCCCcEEEEECC--CCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeee
Confidence 5 35556666555788999875 333322222222 2223678999966666542 2 2333343 22211 222
Q ss_pred ecCCCcEEEEEEeC-CCEEE-EEEcCCeEEEEeCCCCeEEEEec-cCCCcEEEEEEcCCCCEEEEE-eCCCeEEEEeCCC
Q 001039 920 KGHDAQVSCVRMLS-GERVL-TASHDGTVKMWDVRTDTCVATVG-RCSSAVLCMEYDDSTGILAAG-GRDAVANIWDIRA 995 (1179)
Q Consensus 920 ~~h~~~V~~l~~s~-~~~l~-sgs~dg~I~iwd~~~~~~~~~~~-~~~~~v~~l~~sp~~~~l~sg-s~dg~I~iwD~~~ 995 (1179)
.. ......+++.+ +..++ +-..++.|..+|..++....... ........++++|+|+++..+ ..++.|..+|...
T Consensus 223 ~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 223 TK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp EE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred cc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 21 23345667774 44444 44567899999998776532222 222456889999999955554 4677899987653
Q ss_pred --Cce--eEEeecC---------------CCCeE-EEEEc----------CCEEEEEeCCCcEEEEEccCCeeeEEeec-
Q 001039 996 --GRQ--MHKFLGH---------------TKWIR-SIRMD----------RDTVITGSDDWTARMWSISRGTCDAVLAC- 1044 (1179)
Q Consensus 996 --~~~--~~~~~~~---------------~~~I~-sl~~~----------~~~l~sgs~dg~I~iwd~~~~~~~~~~~~- 1044 (1179)
++. ...+.+. -.... .++.+ ++++++-...+.|+.++ .+|........
T Consensus 302 ~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~v~~~~g~g 380 (430)
T 3tc9_A 302 KTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGRVTTFAGRG 380 (430)
T ss_dssp TTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSEEEEEEECC
T ss_pred ccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCcEEEEEeCC
Confidence 221 2222221 01122 34442 23444444567788887 44543332211
Q ss_pred ---C----C---------cCEEEEEEecC-CCEEEEEeCCCcEEEEEcC
Q 001039 1045 ---H----A---------GPVQCVEYSSS-DRGIITGSSDGLLRFWEND 1076 (1179)
Q Consensus 1045 ---h----~---------~~V~~l~~spd-g~~l~sgs~Dg~I~iwd~~ 1076 (1179)
. . .....++++++ +..+++-..++.|+.++.+
T Consensus 381 ~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 381 SNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp TTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 0 1 15788999985 5555555556777777653
No 307
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.15 E-value=0.34 Score=60.83 Aligned_cols=227 Identities=11% Similarity=0.025 Sum_probs=131.1
Q ss_pred EEEEEeCCCcEEEEcCCCCCceeEEEeccccccEE--EEecCCCEEE-EEeCCCcEEEEECCCC----eEEEEeecCCCc
Q 001039 853 FFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKVV-SGSDDQSVLVWDKQTS----QLLEELKGHDAQ 925 (1179)
Q Consensus 853 ~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~--~~s~d~~~l~-sgs~dg~I~iwd~~t~----~~~~~~~~h~~~ 925 (1179)
+|+.+. ...|+..++.. ........+. ..+. ++.+.++.|+ +-...+.|+.+++... .....+......
T Consensus 397 ~Ll~an-~~~Ir~i~l~~--~~~~~l~~~~-~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~ 472 (791)
T 3m0c_C 397 YLFFTN-RHEVRKMTLDR--SEYTSLIPNL-RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA 472 (791)
T ss_dssp EEEEEC-BSSEEEECTTS--CCCEEEECSC-SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSC
T ss_pred cccccc-ccceeEeeccC--CcceeeecCC-CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCC
Confidence 444333 45688888652 2332333333 2333 4566455554 4455678888888753 222333333445
Q ss_pred EEEEEEe--CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCceeEE
Q 001039 926 VSCVRML--SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGR--DAVANIWDIRAGRQMHK 1001 (1179)
Q Consensus 926 V~~l~~s--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~--dg~I~iwD~~~~~~~~~ 1001 (1179)
...|++. .++++++-...+.|.+.++........+.........|+++|.+..|+.+.. .+.|...++........
T Consensus 473 P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~l 552 (791)
T 3m0c_C 473 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL 552 (791)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE
T ss_pred cceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEE
Confidence 5677776 3455556667889999998765544444444456899999998666666553 26899999865444333
Q ss_pred eecCCCCeEEEEEc--CCEEEEE-eCCCcEEEEEccCCeeeEEeecC--CcCEEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 001039 1002 FLGHTKWIRSIRMD--RDTVITG-SDDWTARMWSISRGTCDAVLACH--AGPVQCVEYSSSDRGIITGSSDGLLRFWEND 1076 (1179)
Q Consensus 1002 ~~~~~~~I~sl~~~--~~~l~sg-s~dg~I~iwd~~~~~~~~~~~~h--~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~ 1076 (1179)
+...-.....|+++ ...|+.+ ...+.|...++............ -....+|++.. +..+++-...+.|...|..
T Consensus 553 v~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~ 631 (791)
T 3m0c_C 553 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRL 631 (791)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETT
T ss_pred EeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCC
Confidence 44444678889987 3444444 45678999998655444444322 23455666643 3344444456777777766
Q ss_pred CCCcceEE
Q 001039 1077 DAGGIKCV 1084 (1179)
Q Consensus 1077 ~~~~~~~~ 1084 (1179)
++.....+
T Consensus 632 tG~~~~~l 639 (791)
T 3m0c_C 632 TGSDVNLL 639 (791)
T ss_dssp TCCCCEEE
T ss_pred CCcceEEe
Confidence 65444433
No 308
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.13 E-value=0.078 Score=59.13 Aligned_cols=188 Identities=12% Similarity=0.187 Sum_probs=116.4
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcC------C---EEEEEe-C--CCcEEEEEcc--CCeeeE
Q 001039 975 STGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR------D---TVITGS-D--DWTARMWSIS--RGTCDA 1040 (1179)
Q Consensus 975 ~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~------~---~l~sgs-~--dg~I~iwd~~--~~~~~~ 1040 (1179)
...+++.....+.+.+||+ +|+.+..+.. +.++.+..-+ . ++++.. . +++|++|++. +++ +.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~ 114 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ 114 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence 4456666777889999999 8999888754 4555555433 2 223333 3 5789999773 343 44
Q ss_pred Eeec------CC-cCEEEEEE--ecC-CC-EEEEEeCCCcEEEEEcCCCC----cceEEEeecccCceE-EEEecCCCEE
Q 001039 1041 VLAC------HA-GPVQCVEY--SSS-DR-GIITGSSDGLLRFWENDDAG----GIKCVKNVTIHSSAI-LSINAGDHWL 1104 (1179)
Q Consensus 1041 ~~~~------h~-~~V~~l~~--spd-g~-~l~sgs~Dg~I~iwd~~~~~----~~~~~~~~~~h~~~i-~sis~dg~~l 1104 (1179)
.+.. .. ..+..+|+ +|. ++ ++++...+|.+..|++...+ ..+.++++......- +.+.+....|
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~L 194 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRL 194 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEE
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeE
Confidence 4421 12 56677887 664 44 68888899999999985421 235556655443333 3446778899
Q ss_pred EEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeec-CCC-cccEEEEEE--cCCCC-EEEEEe-CCCcEEEEECC
Q 001039 1105 GIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTP-QKT-VAVVRCIAS--DLERK-RICSGG-RNGLLRLWEAT 1176 (1179)
Q Consensus 1105 asgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~-~~h-~~~V~~v~f--spdg~-~Lasgs-~Dg~I~vWdv~ 1176 (1179)
..+-++..|..++.... .+.. .+.+... .++ ...+..|+. .++|+ +|++++ .+.+..|||..
T Consensus 195 yv~eEd~GIw~~da~p~-------~~~~---~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 195 YIAEEDEAIWKFSAEPD-------GGSN---GTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEETTTEEEEEECSTT-------SCSC---CEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EEecccceEEEEeCCcC-------CCCC---ceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 99999877666665421 1111 0223222 222 236888887 56666 555555 67799999986
No 309
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.03 E-value=0.13 Score=56.98 Aligned_cols=196 Identities=8% Similarity=0.025 Sum_probs=121.5
Q ss_pred cCCCcEEEEEEe-CCCEEEEEE-cCCeEEEEeCCCCeEEEE-ecc----C--CCcEEEEEE---cCCCCEEEEEe-----
Q 001039 921 GHDAQVSCVRML-SGERVLTAS-HDGTVKMWDVRTDTCVAT-VGR----C--SSAVLCMEY---DDSTGILAAGG----- 983 (1179)
Q Consensus 921 ~h~~~V~~l~~s-~~~~l~sgs-~dg~I~iwd~~~~~~~~~-~~~----~--~~~v~~l~~---sp~~~~l~sgs----- 983 (1179)
.....-.++.|. .+..++.++ ..|+|..||...+..... +.. . ...+..+.+ +++++++++..
T Consensus 10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af 89 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSF 89 (334)
T ss_dssp CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTT
T ss_pred CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccc
Confidence 334445577887 456666666 789999999976644333 221 1 124689999 68877777544
Q ss_pred --------CCCeEEEEeCC---CCceeEEee--c-----------CCCCeEEEEEc--CCEEEEEeCC-CcEEEEEccCC
Q 001039 984 --------RDAVANIWDIR---AGRQMHKFL--G-----------HTKWIRSIRMD--RDTVITGSDD-WTARMWSISRG 1036 (1179)
Q Consensus 984 --------~dg~I~iwD~~---~~~~~~~~~--~-----------~~~~I~sl~~~--~~~l~sgs~d-g~I~iwd~~~~ 1036 (1179)
.+..+..+|+. +++.+.... . .......++.+ ++..++++.. +.|...+....
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~ 169 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK 169 (334)
T ss_dssp CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC
T ss_pred cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC
Confidence 26789999999 787765543 1 11246777775 5677878877 88777775533
Q ss_pred eeeEEee------cCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeec-c------cCceEEEEecCCCE
Q 001039 1037 TCDAVLA------CHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVT-I------HSSAILSINAGDHW 1103 (1179)
Q Consensus 1037 ~~~~~~~------~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~-~------h~~~i~sis~dg~~ 1103 (1179)
....+. ......+.|+++|+|+.|++...+|.+..+|+...... .+..-. + ....+.....+|+.
T Consensus 170 -~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~-~v~~~~~G~~~~~~~~dgilp~~~~G~v 247 (334)
T 2p9w_A 170 -TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAW-PEPVKINGDFGTLSGTEKIVTVPVGNES 247 (334)
T ss_dssp -CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCC-CEECEESSCCCCCTTEEEEEEEEETTEE
T ss_pred -EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcce-eecccccCCcccccCcccccccccCCEE
Confidence 333221 11223679999999999998888999999998852210 122110 1 11222333457777
Q ss_pred -EEEEECCCcEEEEeC
Q 001039 1104 -LGIGAADNSMSLFHR 1118 (1179)
Q Consensus 1104 -lasgs~Dg~I~iwd~ 1118 (1179)
+++.+..+.+.+.+.
T Consensus 248 llV~~~~~~~~~l~S~ 263 (334)
T 2p9w_A 248 VLVGARAPYAISFRSW 263 (334)
T ss_dssp EEEEEETTEEEEEECS
T ss_pred EEEEcCCCCEEEEECC
Confidence 444445555555554
No 310
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.02 E-value=0.037 Score=61.56 Aligned_cols=224 Identities=8% Similarity=0.030 Sum_probs=119.0
Q ss_pred EEEEEcCCeEEEEeCCCCeEEEE-eccCCCcEEEEEEcCCCCEEEEEeC-----C------CeEEEEeCCCCceeEE--e
Q 001039 937 VLTASHDGTVKMWDVRTDTCVAT-VGRCSSAVLCMEYDDSTGILAAGGR-----D------AVANIWDIRAGRQMHK--F 1002 (1179)
Q Consensus 937 l~sgs~dg~I~iwd~~~~~~~~~-~~~~~~~v~~l~~sp~~~~l~sgs~-----d------g~I~iwD~~~~~~~~~--~ 1002 (1179)
++.|+ ..+..||..+++.... +..........+...++..++.|+. . ..+..||..+.+-... +
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~ 85 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPL 85 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCB
T ss_pred EEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCC
Confidence 34444 5789999998875431 1111122333334457788888873 1 1278889887653221 1
Q ss_pred ecCCCCeEEEEEcCCEEEEEeCC--------CcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeC-C-----C
Q 001039 1003 LGHTKWIRSIRMDRDTVITGSDD--------WTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSS-D-----G 1068 (1179)
Q Consensus 1003 ~~~~~~I~sl~~~~~~l~sgs~d--------g~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~-D-----g 1068 (1179)
.........+..++..++.|+.+ ..+.+||..+.+-...-..........+..-+++.++.|+. + .
T Consensus 86 p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~ 165 (315)
T 4asc_A 86 PSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLN 165 (315)
T ss_dssp SSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCC
T ss_pred CcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccc
Confidence 11111223344456666666632 45889998876533221111111111122245667777765 2 4
Q ss_pred cEEEEEcCCCCcceEEEeecccCceEEEEecCCCEEEEEECCC-----cEEEEeCCCCCcCcccCCCCccccceeeeecC
Q 001039 1069 LLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIGAADN-----SMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQ 1143 (1179)
Q Consensus 1069 ~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~lasgs~Dg-----~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~ 1143 (1179)
.+.+||..+. ....+...........+...++++++.|+.++ .+.+||..+. .|..+....
T Consensus 166 ~~~~yd~~~~-~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~-------------~W~~~~~~p 231 (315)
T 4asc_A 166 KMCVYDPKKF-EWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDN-------------KWAPFEAFP 231 (315)
T ss_dssp CEEEEETTTT-EEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTT-------------EEEEECCCS
T ss_pred eEEEEeCCCC-eEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCC-------------eEEECCCCC
Confidence 6889998873 23333333222222233445778888887654 4788888643 344443322
Q ss_pred CCcccEEEEEEcCCCCEEEEEeCCC--------------cEEEEECCCC
Q 001039 1144 KTVAVVRCIASDLERKRICSGGRNG--------------LLRLWEATIN 1178 (1179)
Q Consensus 1144 ~h~~~V~~v~fspdg~~Lasgs~Dg--------------~I~vWdv~tg 1178 (1179)
.......++.+ ++++++.||.++ .+.+||+.++
T Consensus 232 ~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 232 QERSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK 278 (315)
T ss_dssp SCCBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred CcccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence 22222223333 667888887642 3678888765
No 311
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.00 E-value=0.02 Score=63.53 Aligned_cols=226 Identities=11% Similarity=0.071 Sum_probs=120.1
Q ss_pred CCCEEEEEEc----CCeEEEEeCCCCeEEEEec--cCCCcEEEEEEcCCCCEEEEEeC----C-----CeEEEEeCCCCc
Q 001039 933 SGERVLTASH----DGTVKMWDVRTDTCVATVG--RCSSAVLCMEYDDSTGILAAGGR----D-----AVANIWDIRAGR 997 (1179)
Q Consensus 933 ~~~~l~sgs~----dg~I~iwd~~~~~~~~~~~--~~~~~v~~l~~sp~~~~l~sgs~----d-----g~I~iwD~~~~~ 997 (1179)
++..++.|+. -..+.+||..+++....-. ........+. -++.+++.|+. + ..+.+||..+.+
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~ 101 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV--VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ 101 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE--ECCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence 4555566653 2468899988876543211 1111112222 25666666665 2 468899988765
Q ss_pred eeEE--eecCCCCeEEEEEcCCEEEEEeCC-----CcEEEEEccCCeeeEEe--ecCCcCEEEEEEecCCCEEEEEeCC-
Q 001039 998 QMHK--FLGHTKWIRSIRMDRDTVITGSDD-----WTARMWSISRGTCDAVL--ACHAGPVQCVEYSSSDRGIITGSSD- 1067 (1179)
Q Consensus 998 ~~~~--~~~~~~~I~sl~~~~~~l~sgs~d-----g~I~iwd~~~~~~~~~~--~~h~~~V~~l~~spdg~~l~sgs~D- 1067 (1179)
-... +.........+..++..++.|+.+ ..+.+||..+.+-...- ......-..+.+ +++.++.|+.+
T Consensus 102 W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~ 179 (308)
T 1zgk_A 102 WSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDG 179 (308)
T ss_dssp EEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCS
T ss_pred EeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCC
Confidence 3221 222222334445566667776643 35888998876543321 111111122222 67777777654
Q ss_pred ----CcEEEEEcCCCCcceEEEeecccCceEEEEecCCCEEEEEECC-----CcEEEEeCCCCCcCcccCCCCcccccee
Q 001039 1068 ----GLLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIGAAD-----NSMSLFHRPQERLGGFSGTGSKMSGWQL 1138 (1179)
Q Consensus 1068 ----g~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~lasgs~D-----g~I~iwd~~~~~~~~~~~~g~~~~~~~~ 1138 (1179)
..+.+||..+. ....+...........++..++++++.|+.+ ..+.+||+.+. .|..
T Consensus 180 ~~~~~~~~~yd~~~~-~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~-------------~W~~ 245 (308)
T 1zgk_A 180 TNRLNSAECYYPERN-EWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETE-------------TWTF 245 (308)
T ss_dssp SCBCCCEEEEETTTT-EEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT-------------EEEE
T ss_pred CCcCceEEEEeCCCC-eEeeCCCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCC-------------cEEE
Confidence 45888998773 2333332222222223334477888888764 56889998743 2443
Q ss_pred eeecCCCcccEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCC
Q 001039 1139 YRTPQKTVAVVRCIASDLERKRICSGGRN-----GLLRLWEATIN 1178 (1179)
Q Consensus 1139 ~~~~~~h~~~V~~v~fspdg~~Lasgs~D-----g~I~vWdv~tg 1178 (1179)
+............+.. ++++++.||.+ ..+.+||+.++
T Consensus 246 ~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 246 VAPMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp CCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCCCCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 3322211111222222 67788888754 35788888765
No 312
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.96 E-value=0.075 Score=59.06 Aligned_cols=218 Identities=8% Similarity=0.044 Sum_probs=117.5
Q ss_pred EEEEeCCCcEEEEECCCCeEEE-EeecC-CCcEEEEEEeCCCEEEEEEc----C-------CeEEEEeCCCCeEEEEecc
Q 001039 896 VVSGSDDQSVLVWDKQTSQLLE-ELKGH-DAQVSCVRMLSGERVLTASH----D-------GTVKMWDVRTDTCVATVGR 962 (1179)
Q Consensus 896 l~sgs~dg~I~iwd~~t~~~~~-~~~~h-~~~V~~l~~s~~~~l~sgs~----d-------g~I~iwd~~~~~~~~~~~~ 962 (1179)
++.|+ ..+.+||..+++-.. .+... ...-.+++..++..++.|+. + ..+..||..+++.... ..
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~-~~ 84 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM-PP 84 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC-CC
T ss_pred EEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEEC-CC
Confidence 34444 578999999887543 12111 12223334447777888874 1 1278899988765332 11
Q ss_pred CCCcE--EEEEEcCCCCEEEEEeCC--------CeEEEEeCCCCceeE--EeecCCCCeEEEEEcCCEEEEEeC-C----
Q 001039 963 CSSAV--LCMEYDDSTGILAAGGRD--------AVANIWDIRAGRQMH--KFLGHTKWIRSIRMDRDTVITGSD-D---- 1025 (1179)
Q Consensus 963 ~~~~v--~~l~~sp~~~~l~sgs~d--------g~I~iwD~~~~~~~~--~~~~~~~~I~sl~~~~~~l~sgs~-d---- 1025 (1179)
...+- .+++. -++..++.|+.+ ..+.+||..+.+-.. .+........++..++..++.|+. +
T Consensus 85 ~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~ 163 (315)
T 4asc_A 85 LPSPRCLFGLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKC 163 (315)
T ss_dssp BSSCEESCEEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCB
T ss_pred CCcchhceeEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcc
Confidence 11111 11122 256666676632 458899998764322 222222333444556667777765 2
Q ss_pred -CcEEEEEccCCeeeEEee--cCCcCEEEEEEecCCCEEEEEeCCC-----cEEEEEcCCCCcceEEEeecccCceEEEE
Q 001039 1026 -WTARMWSISRGTCDAVLA--CHAGPVQCVEYSSSDRGIITGSSDG-----LLRFWENDDAGGIKCVKNVTIHSSAILSI 1097 (1179)
Q Consensus 1026 -g~I~iwd~~~~~~~~~~~--~h~~~V~~l~~spdg~~l~sgs~Dg-----~I~iwd~~~~~~~~~~~~~~~h~~~i~si 1097 (1179)
..+.+||..+.+-...-. .....-.++ .-+++.++.|+.++ .+.+||..+. ....+............+
T Consensus 164 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~yd~~~~-~W~~~~~~p~~r~~~~~~ 240 (315)
T 4asc_A 164 LNKMCVYDPKKFEWKELAPMQTARSLFGAT--VHDGRIIVAAGVTDTGLTSSAEVYSITDN-KWAPFEAFPQERSSLSLV 240 (315)
T ss_dssp CCCEEEEETTTTEEEECCCCSSCCBSCEEE--EETTEEEEEEEECSSSEEEEEEEEETTTT-EEEEECCCSSCCBSCEEE
T ss_pred cceEEEEeCCCCeEEECCCCCCchhceEEE--EECCEEEEEeccCCCCccceEEEEECCCC-eEEECCCCCCcccceeEE
Confidence 468899988765433211 111111222 22677777777654 4788898773 244443332222222334
Q ss_pred ecCCCEEEEEECCC--------------cEEEEeCCC
Q 001039 1098 NAGDHWLGIGAADN--------------SMSLFHRPQ 1120 (1179)
Q Consensus 1098 s~dg~~lasgs~Dg--------------~I~iwd~~~ 1120 (1179)
..++++++.|+.++ .+.+||+.+
T Consensus 241 ~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~ 277 (315)
T 4asc_A 241 SLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEE 277 (315)
T ss_dssp EETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTT
T ss_pred EECCEEEEECCccccCcCCccccccccCcEEEecCCC
Confidence 45778888887642 367788764
No 313
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.87 E-value=0.029 Score=62.27 Aligned_cols=224 Identities=12% Similarity=0.057 Sum_probs=119.0
Q ss_pred CCCCEEEEEeCC----CcEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEEEeC----C-----CcEEEEECCCCeE
Q 001039 849 EDAGFFISGSTD----CLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSD----D-----QSVLVWDKQTSQL 915 (1179)
Q Consensus 849 ~d~~~Lasgs~D----g~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~sgs~----d-----g~I~iwd~~t~~~ 915 (1179)
-++.+++.|+.+ ..+.+||........+..+........+...++..++.|+. + ..+.+||..+.+-
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W 102 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW 102 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEE
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeE
Confidence 456777777742 36888887643333222222111111223346666666665 2 4688999888764
Q ss_pred EEEe--ecCCCcEEEEEEeCCCEEEEEEcC-----CeEEEEeCCCCeEEEEec--cCCCcEEEEEEcCCCCEEEEEeCC-
Q 001039 916 LEEL--KGHDAQVSCVRMLSGERVLTASHD-----GTVKMWDVRTDTCVATVG--RCSSAVLCMEYDDSTGILAAGGRD- 985 (1179)
Q Consensus 916 ~~~~--~~h~~~V~~l~~s~~~~l~sgs~d-----g~I~iwd~~~~~~~~~~~--~~~~~v~~l~~sp~~~~l~sgs~d- 985 (1179)
...- ...... .+++..++..++.|+.+ ..+.+||..+.+....-. .......++.+ ++++++.|+.+
T Consensus 103 ~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~ 179 (308)
T 1zgk_A 103 SPCAPMSVPRNR-IGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDG 179 (308)
T ss_dssp EECCCCSSCCBT-CEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCS
T ss_pred eECCCCCcCccc-cEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCC
Confidence 3321 111111 22233366666676643 468899998876543321 11112222222 56777777654
Q ss_pred ----CeEEEEeCCCCceeEE--eecCCCCeEEEEEcCCEEEEEeCC-----CcEEEEEccCCeeeEEee--cCCcCEEEE
Q 001039 986 ----AVANIWDIRAGRQMHK--FLGHTKWIRSIRMDRDTVITGSDD-----WTARMWSISRGTCDAVLA--CHAGPVQCV 1052 (1179)
Q Consensus 986 ----g~I~iwD~~~~~~~~~--~~~~~~~I~sl~~~~~~l~sgs~d-----g~I~iwd~~~~~~~~~~~--~h~~~V~~l 1052 (1179)
..+.+||+.+.+-... +........++..++..++.|+.+ ..+.+||+.+.+-...-. ........+
T Consensus 180 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~ 259 (308)
T 1zgk_A 180 TNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGIT 259 (308)
T ss_dssp SCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEE
T ss_pred CCcCceEEEEeCCCCeEeeCCCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEE
Confidence 4688999887643321 222222333445566677777654 468999988775433211 111111222
Q ss_pred EEecCCCEEEEEeCC-----CcEEEEEcCC
Q 001039 1053 EYSSSDRGIITGSSD-----GLLRFWENDD 1077 (1179)
Q Consensus 1053 ~~spdg~~l~sgs~D-----g~I~iwd~~~ 1077 (1179)
. -+++.++.|+.+ ..+.+||..+
T Consensus 260 ~--~~~~i~v~GG~~~~~~~~~v~~yd~~~ 287 (308)
T 1zgk_A 260 V--HQGRIYVLGGYDGHTFLDSVECYDPDT 287 (308)
T ss_dssp E--ETTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred E--ECCEEEEEcCcCCCcccceEEEEcCCC
Confidence 2 257777777744 3477888776
No 314
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.79 E-value=2 Score=53.99 Aligned_cols=350 Identities=8% Similarity=0.016 Sum_probs=182.1
Q ss_pred ceEEEEEccCCCceeeccCc-eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceecccccc
Q 001039 770 SWVQSMFSREASSRSHSFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDR 848 (1179)
Q Consensus 770 ~i~~~~fSpdg~~las~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s 848 (1179)
.|.++...++|..+-.|... +..++..++... ....+ ....|.++...
T Consensus 192 ~i~~i~~d~~~~~lWigt~~Gl~~~~~~~~~~~-----------------~~~~l--~~~~i~~i~~d------------ 240 (758)
T 3ott_A 192 FVNSLLEDTTRQCVWIGTEGYLFQYFPSTGQIK-----------------QTEAF--HNNSIKSLALD------------ 240 (758)
T ss_dssp CEEEEEEETTTTEEEEEEEEEEEEEETTTTEEE-----------------EEEEE--EEEEEEEEEEC------------
T ss_pred eeEEEEEECCCCEEEEEECCCCeEEcCCCCeEE-----------------eccCC--CCCeEEEEEEc------------
Confidence 36666677766533333334 777876644310 11111 12346666643
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCCceeEEEecc--------ccccEEEEecC-CCEEEEEeCCCcEEEEECCCCeEEEEe
Q 001039 849 EDAGFFISGSTDCLVKIWDPSLRGSELRATLKG--------HTRTVRAINSD-RGKVVSGSDDQSVLVWDKQTSQLLEEL 919 (1179)
Q Consensus 849 ~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~--------h~~~v~~~s~d-~~~l~sgs~dg~I~iwd~~t~~~~~~~ 919 (1179)
.+|.+. .|+.+ -+.+++... .... .+.. ....|.++..| ...|..|+..| +.++.....-.....
T Consensus 241 ~~g~lW-igT~~-Gl~~~~~~~--~~~~-~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT~~G-l~~~~~~~~~~~~~~ 314 (758)
T 3ott_A 241 GNGDLL-AGTDN-GLYVYHNDT--TPLQ-HIIHDSRNIQSLTNNIIWNIFADQEHNIWLGTDYG-ISLSRYNSALQFIPI 314 (758)
T ss_dssp TTCCEE-EEETT-EEEEECCTT--SCCE-EECCCTTCTTSCSCSCEEEEEECTTCCEEEEESSS-EEEECCCC-CEEEEH
T ss_pred CCCCEE-EEeCC-ceeEEecCC--CcEE-EEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEeCCc-ccccccCCceeEEec
Confidence 455544 45544 478888652 2221 1211 12357777544 33566677667 554433221111111
Q ss_pred e-----cCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCe--EEEEec-------cCCCcEEEEEEcCCCCEEEEEeCC
Q 001039 920 K-----GHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDT--CVATVG-------RCSSAVLCMEYDDSTGILAAGGRD 985 (1179)
Q Consensus 920 ~-----~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~--~~~~~~-------~~~~~v~~l~~sp~~~~l~sgs~d 985 (1179)
. .....|.++.-.....+..|+.+| +..++..+++ ....+. -....|.++.-+.+|++. .|+ +
T Consensus 315 ~~~~~~~~~~~v~~i~~D~~g~lWiGt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt-~ 391 (758)
T 3ott_A 315 SQITGTGDGNQFYSLFRDSKGFYWFGGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLW-IAT-D 391 (758)
T ss_dssp HHHSCSCCCCBEEEEEECTTCCEEEEETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEE-EEE-T
T ss_pred ccCCCCCCCceEEEEEEcCCCCEEEeeCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEE-EEe-C
Confidence 1 123457777766566677777654 6667665532 122221 113468899888888754 455 4
Q ss_pred CeEEEEeCCCCceeEEee-c-----CCCCeEEEEEcC-CEEEEEeCCCcEEEEEccCC-----eee---EEeec----CC
Q 001039 986 AVANIWDIRAGRQMHKFL-G-----HTKWIRSIRMDR-DTVITGSDDWTARMWSISRG-----TCD---AVLAC----HA 1046 (1179)
Q Consensus 986 g~I~iwD~~~~~~~~~~~-~-----~~~~I~sl~~~~-~~l~sgs~dg~I~iwd~~~~-----~~~---~~~~~----h~ 1046 (1179)
+-+..+|..+++...-.. . ....|.++..+. ..|..|+..+-+..+|..+. ... ..+.. ..
T Consensus 392 ~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 471 (758)
T 3ott_A 392 GSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSG 471 (758)
T ss_dssp TEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSC
T ss_pred CcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceeccccccccccccc
Confidence 679999988775433211 1 224678888765 47888887777888886531 111 11111 12
Q ss_pred cCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeec-ccCceEEEE--ecCCCEEEEEECCCcEEEEeCCCCCc
Q 001039 1047 GPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVT-IHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQERL 1123 (1179)
Q Consensus 1047 ~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~-~h~~~i~si--s~dg~~lasgs~Dg~I~iwd~~~~~~ 1123 (1179)
..|.++...++|+.-+.++..+-+..+|..+.. ...+..-. .....+.++ ..+|.+. .|+.+ -+..+|..+...
T Consensus 472 ~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~-~~~~~~~~~~~~~~~~~i~~d~~g~lW-igt~~-Gl~~~~~~~~~~ 548 (758)
T 3ott_A 472 MFINQIIPDNEGNVWVLLYNNKGIDKINPRTRE-VTKLFADELTGEKSPNYLLCDEDGLLW-VGFHG-GVMRINPKDESQ 548 (758)
T ss_dssp SCEEEEEECTTSCEEEEETTCSSEEEEETTTTE-EEEECTTTSCGGGCEEEEEECTTSCEE-EEETT-EEEEECC--CCC
T ss_pred ceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCc-eEEecCCCcCCCcccceEEECCCCCEE-EEecC-ceEEEecCCCce
Confidence 358999999999876544444458888887621 22111000 012345555 3445544 45554 488888765433
Q ss_pred CcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001039 1124 GGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATIN 1178 (1179)
Q Consensus 1124 ~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~tg 1178 (1179)
..+...| -....|.++... +|. |..++.+| |..+|.+++
T Consensus 549 ~~~~~~g-------------l~~~~i~~i~~~-~g~-lWi~t~~G-l~~~~~~~~ 587 (758)
T 3ott_A 549 QSISFGS-------------FSNNEILSMTCV-KNS-IWVSTTNG-LWIIDRKTM 587 (758)
T ss_dssp CBCCCCC----------------CCEEEEEEE-TTE-EEEEESSC-EEEEETTTC
T ss_pred EEecccC-------------CCccceEEEEEC-CCC-EEEECCCC-eEEEcCCCc
Confidence 2221111 112447777664 554 44455555 556666553
No 315
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.69 E-value=0.16 Score=56.37 Aligned_cols=218 Identities=9% Similarity=0.036 Sum_probs=114.3
Q ss_pred eEEEEeCCCCeEEEE-eccCCCcEEEEEEcCCCCEEEEEeC----CC-------eEEEEeCCCCceeEE--eecCCCCeE
Q 001039 945 TVKMWDVRTDTCVAT-VGRCSSAVLCMEYDDSTGILAAGGR----DA-------VANIWDIRAGRQMHK--FLGHTKWIR 1010 (1179)
Q Consensus 945 ~I~iwd~~~~~~~~~-~~~~~~~v~~l~~sp~~~~l~sgs~----dg-------~I~iwD~~~~~~~~~--~~~~~~~I~ 1010 (1179)
.+..||..+++.... ...........+...++..++.|+. ++ .+..||..+.+-... +........
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 104 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFG 104 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCE
T ss_pred ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccc
Confidence 478999998875442 1111122223334557778888873 12 277889877654321 222222333
Q ss_pred EEEEcCCEEEEEeCC-------CcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeC------CCcEEEEEcCC
Q 001039 1011 SIRMDRDTVITGSDD-------WTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSS------DGLLRFWENDD 1077 (1179)
Q Consensus 1011 sl~~~~~~l~sgs~d-------g~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~------Dg~I~iwd~~~ 1077 (1179)
....++..++.|+.+ ..+.+||..+.+-...-..........+...+++.++.|+. -..+.+||..+
T Consensus 105 ~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~ 184 (318)
T 2woz_A 105 LGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKK 184 (318)
T ss_dssp EEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTT
T ss_pred eEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCC
Confidence 444566677777754 24788888876543321111110111112246777777764 23588999887
Q ss_pred CCcceEEEeecccCceEEEEecCCCEEEEEECC-----CcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEE
Q 001039 1078 AGGIKCVKNVTIHSSAILSINAGDHWLGIGAAD-----NSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCI 1152 (1179)
Q Consensus 1078 ~~~~~~~~~~~~h~~~i~sis~dg~~lasgs~D-----g~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v 1152 (1179)
. ....+...........+...++++++.|+.+ ..+.+||..+. .|..+............+
T Consensus 185 ~-~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~-------------~W~~~~~~p~~r~~~~~~ 250 (318)
T 2woz_A 185 G-DWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTN-------------KWEVMTEFPQERSSISLV 250 (318)
T ss_dssp T-EEEEECCCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTC-------------CEEECCCCSSCCBSCEEE
T ss_pred C-EEEECCCCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCC-------------eEEECCCCCCcccceEEE
Confidence 3 2444433322222223334577888887754 35678887643 244333222211122222
Q ss_pred EEcCCCCEEEEEeCC--------------CcEEEEECCCC
Q 001039 1153 ASDLERKRICSGGRN--------------GLLRLWEATIN 1178 (1179)
Q Consensus 1153 ~fspdg~~Lasgs~D--------------g~I~vWdv~tg 1178 (1179)
.+ ++++++.||.+ ..+.+||+.++
T Consensus 251 ~~--~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 288 (318)
T 2woz_A 251 SL--AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK 288 (318)
T ss_dssp EE--TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred EE--CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence 22 56777877754 35788888765
No 316
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.67 E-value=0.32 Score=56.76 Aligned_cols=185 Identities=7% Similarity=-0.018 Sum_probs=109.4
Q ss_pred EEecC--CCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCC-----eEEEEeCCCCeE-EE
Q 001039 888 AINSD--RGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDG-----TVKMWDVRTDTC-VA 958 (1179)
Q Consensus 888 ~~s~d--~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg-----~I~iwd~~~~~~-~~ 958 (1179)
+++++ +..|+.+...+.|+.+|..+++..... ........+++. +++ ++.+...+ .+...+...+.. ..
T Consensus 145 avd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~ 222 (433)
T 4hw6_A 145 MFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERL 222 (433)
T ss_dssp EECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEE
T ss_pred EEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeeccc
Confidence 56663 456666655589999999887765443 345568899998 566 55554422 233333222111 01
Q ss_pred EeccCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEee--cCCCCeEEEEEcC--C-EEEEEeCCCcEEEEE
Q 001039 959 TVGRCSSAVLCMEYDD-STGILAAGGRDAVANIWDIRAGRQMHKFL--GHTKWIRSIRMDR--D-TVITGSDDWTARMWS 1032 (1179)
Q Consensus 959 ~~~~~~~~v~~l~~sp-~~~~l~sgs~dg~I~iwD~~~~~~~~~~~--~~~~~I~sl~~~~--~-~l~sgs~dg~I~iwd 1032 (1179)
.+. .......+++++ ++.+.++-..++.|+.+|..++.....+. +....-..+++++ + ++++-...+.|+.++
T Consensus 223 ~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~ 301 (433)
T 4hw6_A 223 SLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVD 301 (433)
T ss_dssp EEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEe
Confidence 111 123446688999 66666565567899999998776633322 2222334678854 4 445555678899988
Q ss_pred cc--CCee--eEEeecC---------------CcCEEEEEE---------ecCCCEEEEEeCCCcEEEEEc
Q 001039 1033 IS--RGTC--DAVLACH---------------AGPVQCVEY---------SSSDRGIITGSSDGLLRFWEN 1075 (1179)
Q Consensus 1033 ~~--~~~~--~~~~~~h---------------~~~V~~l~~---------spdg~~l~sgs~Dg~I~iwd~ 1075 (1179)
.+ ++.. ...+.+. -.....+++ .++|.+.++-...+.|+.++.
T Consensus 302 ~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 302 YNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP 372 (433)
T ss_dssp BCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred CCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence 65 2321 1222221 123677898 677777777667788888874
No 317
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.58 E-value=0.0074 Score=75.40 Aligned_cols=213 Identities=10% Similarity=-0.062 Sum_probs=115.8
Q ss_pred ceEEEEeecccceeccccccCCCCEE-EEEeCCCcEEEEcCCCC--CceeEEEeccc--cccEEEEecCCCE-EEEEeCC
Q 001039 829 AITALHCVTKREVWDLVGDREDAGFF-ISGSTDCLVKIWDPSLR--GSELRATLKGH--TRTVRAINSDRGK-VVSGSDD 902 (1179)
Q Consensus 829 ~V~~v~~s~~~~~~~~~~~s~d~~~L-asgs~Dg~I~lWd~~~~--~~~~~~~l~~h--~~~v~~~s~d~~~-l~sgs~d 902 (1179)
.+.+++|. ++++.| ++-...+.|+.+++... .......+... ...-.++.+.++. +++-...
T Consensus 407 ~p~gla~d------------~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~ 474 (699)
T 1n7d_A 407 NVVALDTE------------VASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVL 474 (699)
T ss_dssp TCCCCEEE------------TTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTT
T ss_pred ceEEEccc------------cccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccC
Confidence 34567776 444444 44445678988887621 01111111111 1111245544444 4444567
Q ss_pred CcEEEEECCCCeEEEEeecCCCcEEEEEEeC-CCEEEEEE-cC-CeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEE
Q 001039 903 QSVLVWDKQTSQLLEELKGHDAQVSCVRMLS-GERVLTAS-HD-GTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGIL 979 (1179)
Q Consensus 903 g~I~iwd~~t~~~~~~~~~h~~~V~~l~~s~-~~~l~sgs-~d-g~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l 979 (1179)
+.|.+++.........+.........+++.+ +..|+.+. .. +.|..+++............-.....|++++++..|
T Consensus 475 ~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~L 554 (699)
T 1n7d_A 475 GTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRL 554 (699)
T ss_dssp SCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCE
T ss_pred CeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEE
Confidence 8899999876544443333334456777763 44444333 22 678887765433222222223456789999876655
Q ss_pred EEE-eCCCeEEEEeCCCCceeEEee--cCCCCeEEEEEcCCE-EEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEE
Q 001039 980 AAG-GRDAVANIWDIRAGRQMHKFL--GHTKWIRSIRMDRDT-VITGSDDWTARMWSISRGTCDAVLACHAGPVQCVE 1053 (1179)
Q Consensus 980 ~sg-s~dg~I~iwD~~~~~~~~~~~--~~~~~I~sl~~~~~~-l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~ 1053 (1179)
+.+ +..+.|..+|+........+. ........++++++. +++....+.|..+|..+|+.+..+.......+.|+
T Consensus 555 Y~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~ 632 (699)
T 1n7d_A 555 YWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMV 632 (699)
T ss_dssp EEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEECCCTTCSSCCCCC
T ss_pred EEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCceEEeecCCCCCcEEE
Confidence 554 456789999986433322222 122344566676664 44555668899999888877766653333333443
No 318
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.49 E-value=0.16 Score=56.50 Aligned_cols=212 Identities=10% Similarity=0.071 Sum_probs=112.3
Q ss_pred cEEEEECCCCeEEEE-eec-CCCcEEEEEEeCCCEEEEEEc----CC-------eEEEEeCCCCeEEEEec--cCCCcEE
Q 001039 904 SVLVWDKQTSQLLEE-LKG-HDAQVSCVRMLSGERVLTASH----DG-------TVKMWDVRTDTCVATVG--RCSSAVL 968 (1179)
Q Consensus 904 ~I~iwd~~t~~~~~~-~~~-h~~~V~~l~~s~~~~l~sgs~----dg-------~I~iwd~~~~~~~~~~~--~~~~~v~ 968 (1179)
.+..||..+++-... ... ....-.+++..++..++.|+. ++ .+..||..+++....-. .......
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 104 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFG 104 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCE
T ss_pred ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccc
Confidence 478999988875442 111 112223444446777777773 12 27788988876543211 1111112
Q ss_pred EEEEcCCCCEEEEEeCC-------CeEEEEeCCCCceeEE--eecCCCCeEEEEEcCCEEEEEeC------CCcEEEEEc
Q 001039 969 CMEYDDSTGILAAGGRD-------AVANIWDIRAGRQMHK--FLGHTKWIRSIRMDRDTVITGSD------DWTARMWSI 1033 (1179)
Q Consensus 969 ~l~~sp~~~~l~sgs~d-------g~I~iwD~~~~~~~~~--~~~~~~~I~sl~~~~~~l~sgs~------dg~I~iwd~ 1033 (1179)
.+.+ +++.++.|+.+ ..+.+||..+.+-... +........++..++..++.|+. -..+.+||.
T Consensus 105 ~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~ 182 (318)
T 2woz_A 105 LGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNP 182 (318)
T ss_dssp EEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEET
T ss_pred eEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcC
Confidence 2222 56777777753 3588899887654322 11111122334456666666653 235899999
Q ss_pred cCCeeeEEee--cCCcCEEEEEEecCCCEEEEEeCC-----CcEEEEEcCCCCcceEEEeecccCceEEEEecCCCEEEE
Q 001039 1034 SRGTCDAVLA--CHAGPVQCVEYSSSDRGIITGSSD-----GLLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGI 1106 (1179)
Q Consensus 1034 ~~~~~~~~~~--~h~~~V~~l~~spdg~~l~sgs~D-----g~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~las 1106 (1179)
.+.+-...-. ...... +++. -+++.++.|+.+ ..+.+||..+.. ...+............+..++++++.
T Consensus 183 ~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~~~~~i~v~ 259 (318)
T 2woz_A 183 KKGDWKDLAPMKTPRSMF-GVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNK-WEVMTEFPQERSSISLVSLAGSLYAI 259 (318)
T ss_dssp TTTEEEEECCCSSCCBSC-EEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCC-EEECCCCSSCCBSCEEEEETTEEEEE
T ss_pred CCCEEEECCCCCCCcccc-eEEE-ECCEEEEEcCcCCCCccceEEEEECCCCe-EEECCCCCCcccceEEEEECCEEEEE
Confidence 8875433321 111111 2222 257777777653 347788887732 44443333222222334457777777
Q ss_pred EECC--------------CcEEEEeCCC
Q 001039 1107 GAAD--------------NSMSLFHRPQ 1120 (1179)
Q Consensus 1107 gs~D--------------g~I~iwd~~~ 1120 (1179)
|+.+ ..+.+||..+
T Consensus 260 GG~~~~~~~~~~~~~~~~~~v~~yd~~~ 287 (318)
T 2woz_A 260 GGFAMIQLESKEFAPTEVNDIWKYEDDK 287 (318)
T ss_dssp CCBCCBC----CCBCCBCCCEEEEETTT
T ss_pred CCeeccCCCCceeccceeeeEEEEeCCC
Confidence 7654 3577778763
No 319
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.37 E-value=0.13 Score=56.87 Aligned_cols=162 Identities=9% Similarity=0.000 Sum_probs=102.4
Q ss_pred cCCCCeEEEEEcC--CEEEEEe-CCCcEEEEEccCCeeeEEeecC-----C--cCEEEEEE---ecCCCEEEEEe-----
Q 001039 1004 GHTKWIRSIRMDR--DTVITGS-DDWTARMWSISRGTCDAVLACH-----A--GPVQCVEY---SSSDRGIITGS----- 1065 (1179)
Q Consensus 1004 ~~~~~I~sl~~~~--~~l~sgs-~dg~I~iwd~~~~~~~~~~~~h-----~--~~V~~l~~---spdg~~l~sgs----- 1065 (1179)
.......++.|+. ..+..++ ..|+|..||...+......... . ..+..+.| .|+++++++..
T Consensus 10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af 89 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSF 89 (334)
T ss_dssp CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTT
T ss_pred CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccc
Confidence 3444455788865 4666665 7899999998766443332211 1 13678999 68887777544
Q ss_pred --------CCCcEEEEEcC---CCCcceEEEeecccC-----------ceE--EEEecCCCEEEEEECC-CcEEEEeCCC
Q 001039 1066 --------SDGLLRFWEND---DAGGIKCVKNVTIHS-----------SAI--LSINAGDHWLGIGAAD-NSMSLFHRPQ 1120 (1179)
Q Consensus 1066 --------~Dg~I~iwd~~---~~~~~~~~~~~~~h~-----------~~i--~sis~dg~~lasgs~D-g~I~iwd~~~ 1120 (1179)
.+..|..+|+. +++..... .+.... ... +.+.++|+.-++++.. +.|...+..
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~-dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd- 167 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLPLSENSKPVWSV-NFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD- 167 (334)
T ss_dssp CTTSCCSSSCCEEEEEESSCCTTCCCSEEE-ESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT-
T ss_pred cccccccCCCCEEEEEcCCcCCCCCEEEEe-cCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC-
Confidence 26779999998 54433222 222111 123 4447889998888887 887777664
Q ss_pred CCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001039 1121 ERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEAT 1176 (1179)
Q Consensus 1121 ~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~ 1176 (1179)
|.....|.............+.++++|||+.|+....+|.+..+|+.
T Consensus 168 ---------G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 168 ---------GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp ---------SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred ---------CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 33333332211112223346799999999999988779999998865
No 320
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.26 E-value=0.012 Score=73.53 Aligned_cols=221 Identities=7% Similarity=-0.051 Sum_probs=119.9
Q ss_pred cCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEeCCC----CceeEEeecCCCCeEEEEEc-
Q 001039 942 HDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGG-RDAVANIWDIRA----GRQMHKFLGHTKWIRSIRMD- 1015 (1179)
Q Consensus 942 ~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs-~dg~I~iwD~~~----~~~~~~~~~~~~~I~sl~~~- 1015 (1179)
..+.|+..++.+.+....+.. ...+..++|++.+..|+.+. ..+.|+.+++.. ......+.........++++
T Consensus 384 ~~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~ 462 (699)
T 1n7d_A 384 NRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 462 (699)
T ss_dssp CTTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCC
T ss_pred CccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEe
Confidence 345778888877665444332 34567889998776666554 457899999875 22222221122234456654
Q ss_pred -C-CEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeC--CCcEEEEEcCCCCcceEEEeecccC
Q 001039 1016 -R-DTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSS--DGLLRFWENDDAGGIKCVKNVTIHS 1091 (1179)
Q Consensus 1016 -~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~--Dg~I~iwd~~~~~~~~~~~~~~~h~ 1091 (1179)
+ +++++-...+.|.++++........+.........++++|.+.+|+.+.. .+.|..++++... ...+.......
T Consensus 463 ~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l~~~~l~~ 541 (699)
T 1n7d_A 463 IHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQW 541 (699)
T ss_dssp SSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEESCSSCSS
T ss_pred eCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEEEeCCCCC
Confidence 3 34555556788999998765444443333345678899997665554442 2678777776422 22221111122
Q ss_pred ceEEEEecCCCEEE-EEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcE
Q 001039 1092 SAILSINAGDHWLG-IGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLL 1170 (1179)
Q Consensus 1092 ~~i~sis~dg~~la-sgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I 1170 (1179)
..-+++++++..|+ +-+..+.|.++++..... ..+...........+|++..+ .++++....+.|
T Consensus 542 PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~-------------~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V 607 (699)
T 1n7d_A 542 PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-------------KTILEDEKRLAHPFSLAVFED-KVFWTDIINEAI 607 (699)
T ss_dssp CCCEEECTTTCCEEEEETTTTEEEEECSSSSCC-------------EEECCCSSSCSSCCCCEEETT-EEEEECSTTTCE
T ss_pred ccEEEEeccCCEEEEEecCCCeEEEEccCCCce-------------EEEEecCCcCCCceEeEEECC-EEEEEeCCCCeE
Confidence 23367777655444 444567899998863211 111111111112234444443 344455566788
Q ss_pred EEEECCCC
Q 001039 1171 RLWEATIN 1178 (1179)
Q Consensus 1171 ~vWdv~tg 1178 (1179)
..++..+|
T Consensus 608 ~~~d~~~G 615 (699)
T 1n7d_A 608 FSANRLTG 615 (699)
T ss_dssp EEEETTTE
T ss_pred EEEEccCC
Confidence 88886554
No 321
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.08 E-value=0.84 Score=53.66 Aligned_cols=222 Identities=12% Similarity=0.069 Sum_probs=120.7
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCceeEEEecccc-----ccEEEE-------ecCCCEEEEEeCCC-------cEEEEECC
Q 001039 851 AGFFISGSTDCLVKIWDPSLRGSELRATLKGHT-----RTVRAI-------NSDRGKVVSGSDDQ-------SVLVWDKQ 911 (1179)
Q Consensus 851 ~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~-----~~v~~~-------s~d~~~l~sgs~dg-------~I~iwd~~ 911 (1179)
++++++....+.|++.|.. +..+........ ..-.++ ++++++++++...+ .|.+.+..
T Consensus 152 ~~Lyv~~~~~~~i~~ID~~--~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~ 229 (496)
T 3kya_A 152 DHLYICYDGHKAIQLIDLK--NRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRN 229 (496)
T ss_dssp EEEEEEEETEEEEEEEETT--TTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECC
T ss_pred CEEEEEECCCCeEEEEECC--CCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecC
Confidence 4444444445678888865 333333222211 122356 78998777776654 25666533
Q ss_pred C-CeEE-----EEeecCCCcEEEEEEeC--CCEEEEEEcCCeEEEEeCC-------CCeE-----------EEE-ec-cC
Q 001039 912 T-SQLL-----EELKGHDAQVSCVRMLS--GERVLTASHDGTVKMWDVR-------TDTC-----------VAT-VG-RC 963 (1179)
Q Consensus 912 t-~~~~-----~~~~~h~~~V~~l~~s~--~~~l~sgs~dg~I~iwd~~-------~~~~-----------~~~-~~-~~ 963 (1179)
. ++.. ..+... .....++.++ +.++++-..++.|..+|+. ++.. ... +. ..
T Consensus 230 ~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~ 308 (496)
T 3kya_A 230 ADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIAD 308 (496)
T ss_dssp TTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSS
T ss_pred CCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCC
Confidence 3 2211 112111 1234556664 4455566678889999987 5543 112 11 22
Q ss_pred CCcEEEEEEcCCCCEEEEE-eCCCeEEEEeCC--CCce--eEEeecC---C------------CCeE-EEEEc-------
Q 001039 964 SSAVLCMEYDDSTGILAAG-GRDAVANIWDIR--AGRQ--MHKFLGH---T------------KWIR-SIRMD------- 1015 (1179)
Q Consensus 964 ~~~v~~l~~sp~~~~l~sg-s~dg~I~iwD~~--~~~~--~~~~~~~---~------------~~I~-sl~~~------- 1015 (1179)
......++++|+|+.+..+ +..+.|+.+|.. ++.. ...+.+. . .... .+..+
T Consensus 309 ~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~ 388 (496)
T 3kya_A 309 PSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGE 388 (496)
T ss_dssp SSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSS
T ss_pred CCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEcccccccc
Confidence 3456899999999965554 456788886543 3321 1222221 1 1233 34443
Q ss_pred --CCEEEEEeCCCcEEEEEccCCeeeEEeecC------------------------CcCEEEEEEecC-CCEEEEEeCCC
Q 001039 1016 --RDTVITGSDDWTARMWSISRGTCDAVLACH------------------------AGPVQCVEYSSS-DRGIITGSSDG 1068 (1179)
Q Consensus 1016 --~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h------------------------~~~V~~l~~spd-g~~l~sgs~Dg 1068 (1179)
++++++-..++.|+.++ .+|. +.++.+. -.....++++++ |.+.++=....
T Consensus 389 ~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~ 466 (496)
T 3kya_A 389 EEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGH 466 (496)
T ss_dssp CCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTT
T ss_pred CCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCC
Confidence 23555555677888888 4553 3344322 023567888886 55555555667
Q ss_pred cEEEEEcCC
Q 001039 1069 LLRFWENDD 1077 (1179)
Q Consensus 1069 ~I~iwd~~~ 1077 (1179)
.|+.++++.
T Consensus 467 rIrki~~~~ 475 (496)
T 3kya_A 467 TIRTISMEQ 475 (496)
T ss_dssp EEEEEEECC
T ss_pred EEEEEECCC
Confidence 777777765
No 322
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.05 E-value=1.6 Score=49.18 Aligned_cols=72 Identities=13% Similarity=0.080 Sum_probs=46.7
Q ss_pred CCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeE--EEEec---cCCCcEEEEEEcCC---CCEEEEEeC-C-----CeE
Q 001039 923 DAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTC--VATVG---RCSSAVLCMEYDDS---TGILAAGGR-D-----AVA 988 (1179)
Q Consensus 923 ~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~--~~~~~---~~~~~v~~l~~sp~---~~~l~sgs~-d-----g~I 988 (1179)
-...+.++|.++..++++..+|.|.+++ +++. +..+. ........++++|+ +..+.++.. + +.|
T Consensus 30 l~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp CSCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 3456789998544567777889999998 4442 22221 12456899999998 555555443 2 678
Q ss_pred EEEeCCCC
Q 001039 989 NIWDIRAG 996 (1179)
Q Consensus 989 ~iwD~~~~ 996 (1179)
..++...+
T Consensus 108 ~r~~~~~~ 115 (352)
T 2ism_A 108 VRLRHLGE 115 (352)
T ss_dssp EEEEECSS
T ss_pred EEEEeCCC
Confidence 88887643
No 323
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.04 E-value=0.078 Score=59.31 Aligned_cols=141 Identities=14% Similarity=0.071 Sum_probs=87.8
Q ss_pred CCEEEEEEcCCeEEEEeCCCCeEEEEeccC-CCcEEEEEE--cCCCCEEEEE--eCCCeEEEEeCCCCceeEEeec----
Q 001039 934 GERVLTASHDGTVKMWDVRTDTCVATVGRC-SSAVLCMEY--DDSTGILAAG--GRDAVANIWDIRAGRQMHKFLG---- 1004 (1179)
Q Consensus 934 ~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~-~~~v~~l~~--sp~~~~l~sg--s~dg~I~iwD~~~~~~~~~~~~---- 1004 (1179)
++.+++++.||.|.-+|..+|+...++... ..++....- .+.+..++.+ +.||.|..+|..+|.....+..
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 457899999999999999999999998654 122222110 0112234444 5899999999988865544321
Q ss_pred CCCCeEE---EEE-------cCCEEEEEeCCCcEEEEEccCCeeeEEeecCCc--C-----EEEEEEe-----cCCCEEE
Q 001039 1005 HTKWIRS---IRM-------DRDTVITGSDDWTARMWSISRGTCDAVLACHAG--P-----VQCVEYS-----SSDRGII 1062 (1179)
Q Consensus 1005 ~~~~I~s---l~~-------~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~--~-----V~~l~~s-----pdg~~l~ 1062 (1179)
...++.. ... .++.+++|+.+|.+...|+.+|+.+..+..... . ..|.... ..+..++
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ 169 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV 169 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence 1222221 011 456889999999999999999999998864321 0 0111110 1245677
Q ss_pred EEeCCCcEEEEE
Q 001039 1063 TGSSDGLLRFWE 1074 (1179)
Q Consensus 1063 sgs~Dg~I~iwd 1074 (1179)
.|..+..+.+.+
T Consensus 170 ig~~~y~v~~~~ 181 (339)
T 2be1_A 170 IGKTIFELGIHS 181 (339)
T ss_dssp EEEEEEECEECC
T ss_pred EecceEEEEEEC
Confidence 777777776666
No 324
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.94 E-value=0.11 Score=58.78 Aligned_cols=227 Identities=10% Similarity=0.017 Sum_probs=112.2
Q ss_pred CCCEEEEEeCC-CcEEEEcCCC--CCceeEEEec-cccccEEEEecCCCEEEEEeC-C---------CcEEEEECCCCeE
Q 001039 850 DAGFFISGSTD-CLVKIWDPSL--RGSELRATLK-GHTRTVRAINSDRGKVVSGSD-D---------QSVLVWDKQTSQL 915 (1179)
Q Consensus 850 d~~~Lasgs~D-g~I~lWd~~~--~~~~~~~~l~-~h~~~v~~~s~d~~~l~sgs~-d---------g~I~iwd~~t~~~ 915 (1179)
++.+++.|+.+ ..+.++|... .....+..+. .......+...++..++.|+. + ..+.+||..+.+-
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W 98 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSW 98 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEE
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcE
Confidence 46666777643 4688888752 2232222222 111112223346666677665 2 4688999988764
Q ss_pred EEEeecC-CC-cEEEEEEeCCCEEEEEEcC---------------------------------------CeEEEEeCCCC
Q 001039 916 LEELKGH-DA-QVSCVRMLSGERVLTASHD---------------------------------------GTVKMWDVRTD 954 (1179)
Q Consensus 916 ~~~~~~h-~~-~V~~l~~s~~~~l~sgs~d---------------------------------------g~I~iwd~~~~ 954 (1179)
...-... .. .-.++...++..++.|+.+ ..+.+||..+.
T Consensus 99 ~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~ 178 (357)
T 2uvk_A 99 VKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQ 178 (357)
T ss_dssp EECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTT
T ss_pred EECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCC
Confidence 4322111 11 1122233567777778754 57899999887
Q ss_pred eEEEEeccC--CCcEEEEEEcCCCCEEEEEeC------CCeEEEEeC--CCCceeE--EeecCCC--CeEEEEEcCCEEE
Q 001039 955 TCVATVGRC--SSAVLCMEYDDSTGILAAGGR------DAVANIWDI--RAGRQMH--KFLGHTK--WIRSIRMDRDTVI 1020 (1179)
Q Consensus 955 ~~~~~~~~~--~~~v~~l~~sp~~~~l~sgs~------dg~I~iwD~--~~~~~~~--~~~~~~~--~I~sl~~~~~~l~ 1020 (1179)
+....-... ...-.+++.. ++++++.|+. ...+..||+ .+.+-.. .+..... ...++..++.+++
T Consensus 179 ~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv 257 (357)
T 2uvk_A 179 QWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIF 257 (357)
T ss_dssp EEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEE
T ss_pred cEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEEEE
Confidence 654332111 1110222222 5566666653 345777876 4332211 1111111 2224455666777
Q ss_pred EEeCC----------------------CcEEEEEccCCeee--EEeecCCcCEEEEEEecCCCEEEEEeCCC------cE
Q 001039 1021 TGSDD----------------------WTARMWSISRGTCD--AVLACHAGPVQCVEYSSSDRGIITGSSDG------LL 1070 (1179)
Q Consensus 1021 sgs~d----------------------g~I~iwd~~~~~~~--~~~~~h~~~V~~l~~spdg~~l~sgs~Dg------~I 1070 (1179)
.|+.+ ..+.+||+.+.+-. ..+......-. +..-+++.++.|+.++ .|
T Consensus 258 ~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~--~~~~~~~i~v~GG~~~~~~~~~~v 335 (357)
T 2uvk_A 258 AGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGV--SLPWNNSLLIIGGETAGGKAVTDS 335 (357)
T ss_dssp ECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSE--EEEETTEEEEEEEECGGGCEEEEE
T ss_pred EcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccce--eEEeCCEEEEEeeeCCCCCEeeeE
Confidence 77632 25778998765433 22322222222 2334678888888543 35
Q ss_pred EEEEcCCCC
Q 001039 1071 RFWENDDAG 1079 (1179)
Q Consensus 1071 ~iwd~~~~~ 1079 (1179)
.++++++++
T Consensus 336 ~~l~~~~~~ 344 (357)
T 2uvk_A 336 VLITVKDNK 344 (357)
T ss_dssp EEEEC-CCS
T ss_pred EEEEEcCcE
Confidence 555777643
No 325
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.88 E-value=0.12 Score=57.76 Aligned_cols=185 Identities=10% Similarity=0.070 Sum_probs=108.2
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCceeEEEeccc-cccEEEEe----cCCCEEEEE--eCCCcEEEEECCCCeEEEEeec--
Q 001039 851 AGFFISGSTDCLVKIWDPSLRGSELRATLKGH-TRTVRAIN----SDRGKVVSG--SDDQSVLVWDKQTSQLLEELKG-- 921 (1179)
Q Consensus 851 ~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h-~~~v~~~s----~d~~~l~sg--s~dg~I~iwd~~t~~~~~~~~~-- 921 (1179)
+..++.++.||.|.-.|.. +++....++.. ..+..... +.+..++.+ +.||.+..+|..+|.....+..
T Consensus 10 ~~~V~v~t~dG~l~Ald~~--tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~ 87 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRR--NGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQ 87 (339)
T ss_dssp EEEEEEEETTSCEEEEETT--TTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHH
T ss_pred CCEEEEEeCCCeEEEEECC--CCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccc
Confidence 5578899999999999965 45555665543 12222221 123344444 5899999999999866654432
Q ss_pred --CCCcEEE---EEE------eCCCEEEEEEcCCeEEEEeCCCCeEEEEeccCC--Cc-----EEEEEEc-----CCCCE
Q 001039 922 --HDAQVSC---VRM------LSGERVLTASHDGTVKMWDVRTDTCVATVGRCS--SA-----VLCMEYD-----DSTGI 978 (1179)
Q Consensus 922 --h~~~V~~---l~~------s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~--~~-----v~~l~~s-----p~~~~ 978 (1179)
...++.. ... +.+..+++|+.+|.+...|..+|+.+..+.... .. ..|.... ..+..
T Consensus 88 lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~ 167 (339)
T 2be1_A 88 LVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENM 167 (339)
T ss_dssp HHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCE
T ss_pred ceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCe
Confidence 1122221 001 256788999999999999999999999885432 10 1111111 12456
Q ss_pred EEEEeCCCeEEEEeCCCCceeEEe-----ecCCCC--eE---EEEEcCCEEEEEeCCCcEEEEEccCCeeeE
Q 001039 979 LAAGGRDAVANIWDIRAGRQMHKF-----LGHTKW--IR---SIRMDRDTVITGSDDWTARMWSISRGTCDA 1040 (1179)
Q Consensus 979 l~sgs~dg~I~iwD~~~~~~~~~~-----~~~~~~--I~---sl~~~~~~l~sgs~dg~I~iwd~~~~~~~~ 1040 (1179)
++.|..+..+.+.+ ++|+ +... ...... +. .+..++.. +.++.||.|..+|..+|+.+.
T Consensus 168 v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 168 IVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred EEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 77777777777766 4553 2111 111000 00 00011333 568899999999998888765
No 326
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.78 E-value=0.27 Score=63.89 Aligned_cols=224 Identities=9% Similarity=0.123 Sum_probs=138.3
Q ss_pred CCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEE-cCCEEEE
Q 001039 943 DGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM-DRDTVIT 1021 (1179)
Q Consensus 943 dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~-~~~~l~s 1021 (1179)
...|.|.|+.++..+..- .-.--+.-.+|..+.+|.-. ..++.|+|+.+...++.+.-.. .|.--.| +++.++.
T Consensus 47 ~~~vvIidl~~~~~~~rr---pi~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e-~VvfWkWis~~~l~l 121 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRR---PISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVAL 121 (1630)
T ss_pred CceEEEEECCCCCCcccc---cccchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCC-CceEEEecCCCeeEE
Confidence 347888898876644221 11223445678888777664 6899999999888877765444 4556666 6776666
Q ss_pred EeCCCcEEEEEccC-CeeeEEeecC----CcCEEEEEEecCCCEEEEEe-------CCCcEEEEEcCCCCcceEEEeecc
Q 001039 1022 GSDDWTARMWSISR-GTCDAVLACH----AGPVQCVEYSSSDRGIITGS-------SDGLLRFWENDDAGGIKCVKNVTI 1089 (1179)
Q Consensus 1022 gs~dg~I~iwd~~~-~~~~~~~~~h----~~~V~~l~~spdg~~l~sgs-------~Dg~I~iwd~~~~~~~~~~~~~~~ 1089 (1179)
.+ +..|+-|++.. ..+.+.+..| ...|..-..+++.+|++..| -.|.+.+|+.+. +.-..+.|
T Consensus 122 VT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er----~~sQ~ieg 196 (1630)
T 1xi4_A 122 VT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR----KVSQPIEG 196 (1630)
T ss_pred Ec-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc----ccchhhhH
Confidence 54 55799999964 3444444444 45677778899999987544 357888998876 33444566
Q ss_pred cCceEEEEec----C-CCEEEEEEC---CCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEE
Q 001039 1090 HSSAILSINA----G-DHWLGIGAA---DNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRI 1161 (1179)
Q Consensus 1090 h~~~i~sis~----d-g~~lasgs~---Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~L 1161 (1179)
|...-..+.. . ...++.+.. .+.++|-++....... .+... ...+....+.....--.++..|+.-..+
T Consensus 197 ha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~-~~f~k--k~~~~~~~~~~~~Dfpv~~~vs~k~g~i 273 (1630)
T 1xi4_A 197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN-QPFPK--KAVDVFFPPEAQNDFPVAMQISEKHDVV 273 (1630)
T ss_pred hHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCC-CCCcc--ccccccCCcccccCcceEEEeccccCEE
Confidence 6655544421 1 223332222 3789999985431100 00000 0111122222233344577788888888
Q ss_pred EEEeCCCcEEEEECCCCC
Q 001039 1162 CSGGRNGLLRLWEATINI 1179 (1179)
Q Consensus 1162 asgs~Dg~I~vWdv~tg~ 1179 (1179)
..-+.-|.|.++|+.||.
T Consensus 274 y~itk~G~~~~~d~~t~~ 291 (1630)
T 1xi4_A 274 FLITKYGYIHLYDLETGT 291 (1630)
T ss_pred EEEecCceEEEEecccch
Confidence 889999999999999974
No 327
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.60 E-value=0.41 Score=62.26 Aligned_cols=212 Identities=10% Similarity=0.173 Sum_probs=131.0
Q ss_pred CCcEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEeCCCEEEE
Q 001039 860 DCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLT 939 (1179)
Q Consensus 860 Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s~~~~l~s 939 (1179)
..+|.|-|+..+.....+...+ ...| ++|..+.++.-. ..++.|+|+++...++...-. ..|.--.|.+.+.++.
T Consensus 47 ~~~vvIidl~~~~~~~rrpi~A-dsAI--MnP~~~iiALra-g~~lQiFnl~~k~klks~~~~-e~VvfWkWis~~~l~l 121 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPISA-DSAI--MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNTVAL 121 (1630)
T ss_pred CceEEEEECCCCCCcccccccc-hhhc--cCCCcceEEEec-CCeEEEeehHHhhhhcccccC-CCceEEEecCCCeeEE
Confidence 3478888876333221111111 1111 477777666554 789999999998887776643 3565556667777666
Q ss_pred EEcCCeEEEEeCCCC-eEEEEeccC----CCcEEEEEEcCCCCEEEEEe-------CCCeEEEEeCCCCceeEEeecCCC
Q 001039 940 ASHDGTVKMWDVRTD-TCVATVGRC----SSAVLCMEYDDSTGILAAGG-------RDAVANIWDIRAGRQMHKFLGHTK 1007 (1179)
Q Consensus 940 gs~dg~I~iwd~~~~-~~~~~~~~~----~~~v~~l~~sp~~~~l~sgs-------~dg~I~iwD~~~~~~~~~~~~~~~ 1007 (1179)
.+. ..|.-|++... .+.+.+..| +..|..-..+++.+|++..| -.|.+.+|....+ ..+.+.||.+
T Consensus 122 VT~-~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~ 199 (1630)
T 1xi4_A 122 VTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAA 199 (1630)
T ss_pred EcC-CeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHh
Confidence 554 57999999642 344444333 45677888899999887654 3478888887644 2334556665
Q ss_pred CeEEEEEcCC----EEEE-Ee---CCCcEEEEEccCC---eeeE------E-ee--cCCcCEEEEEEecCCCEEEEEeCC
Q 001039 1008 WIRSIRMDRD----TVIT-GS---DDWTARMWSISRG---TCDA------V-LA--CHAGPVQCVEYSSSDRGIITGSSD 1067 (1179)
Q Consensus 1008 ~I~sl~~~~~----~l~s-gs---~dg~I~iwd~~~~---~~~~------~-~~--~h~~~V~~l~~spdg~~l~sgs~D 1067 (1179)
.-..+..+++ .+++ +. ..+.++|-++... .... . +. ....-..++..++....+..-+.-
T Consensus 200 ~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~ 279 (1630)
T 1xi4_A 200 SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKY 279 (1630)
T ss_pred hhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecC
Confidence 5555554332 2222 21 1268888888543 1100 0 11 112334577788888888889999
Q ss_pred CcEEEEEcCCC
Q 001039 1068 GLLRFWENDDA 1078 (1179)
Q Consensus 1068 g~I~iwd~~~~ 1078 (1179)
|.|+++|+.++
T Consensus 280 G~~~~~d~~t~ 290 (1630)
T 1xi4_A 280 GYIHLYDLETG 290 (1630)
T ss_pred ceEEEEecccc
Confidence 99999999994
No 328
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.54 E-value=0.19 Score=56.78 Aligned_cols=227 Identities=9% Similarity=0.042 Sum_probs=114.3
Q ss_pred CCCEEEEEeC-CCcEEEEECCC--CeEEE--EeecCCCcEEEEEEeCCCEEEEEEc-C---------CeEEEEeCCCCeE
Q 001039 892 DRGKVVSGSD-DQSVLVWDKQT--SQLLE--ELKGHDAQVSCVRMLSGERVLTASH-D---------GTVKMWDVRTDTC 956 (1179)
Q Consensus 892 d~~~l~sgs~-dg~I~iwd~~t--~~~~~--~~~~h~~~V~~l~~s~~~~l~sgs~-d---------g~I~iwd~~~~~~ 956 (1179)
++..++.|+. ...+.++|..+ .+-.. .+......-.+++..++..++.|+. + ..+.+||..+.+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W 98 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSW 98 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEE
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcE
Confidence 4444555543 34678888764 32221 1110111112333346666777765 2 4689999988765
Q ss_pred EEEeccC---CCcEEEEEEcCCCCEEEEEeCC---------------------------------------CeEEEEeCC
Q 001039 957 VATVGRC---SSAVLCMEYDDSTGILAAGGRD---------------------------------------AVANIWDIR 994 (1179)
Q Consensus 957 ~~~~~~~---~~~v~~l~~sp~~~~l~sgs~d---------------------------------------g~I~iwD~~ 994 (1179)
...-... .....++. .++++++.|+.+ ..+.+||..
T Consensus 99 ~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~ 176 (357)
T 2uvk_A 99 VKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPS 176 (357)
T ss_dssp EECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETT
T ss_pred EECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCC
Confidence 4332111 11222222 567777888754 578999998
Q ss_pred CCceeEE--eecCCCC-eEEEEEcCCEEEEEeC------CCcEEEEEc--cCCeeeEE--eecCCcCEEEEEEecCCCEE
Q 001039 995 AGRQMHK--FLGHTKW-IRSIRMDRDTVITGSD------DWTARMWSI--SRGTCDAV--LACHAGPVQCVEYSSSDRGI 1061 (1179)
Q Consensus 995 ~~~~~~~--~~~~~~~-I~sl~~~~~~l~sgs~------dg~I~iwd~--~~~~~~~~--~~~h~~~V~~l~~spdg~~l 1061 (1179)
+.+-... +...... ...+..++.+++.|+. ...+..||+ .+.+-... +..........+...+++.+
T Consensus 177 ~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iy 256 (357)
T 2uvk_A 177 TQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLI 256 (357)
T ss_dssp TTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEEE
T ss_pred CCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEEE
Confidence 7654332 2211112 3334445556666653 345777876 43332211 11111111112233456777
Q ss_pred EEEeCC----------------------CcEEEEEcCCCCcceEEEeecccCceEEEEecCCCEEEEEECCC------cE
Q 001039 1062 ITGSSD----------------------GLLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIGAADN------SM 1113 (1179)
Q Consensus 1062 ~sgs~D----------------------g~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~lasgs~Dg------~I 1113 (1179)
+.|+.+ ..+.+||..+. ....+..+........++..++++++.|+.++ .|
T Consensus 257 v~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~-~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~v 335 (357)
T 2uvk_A 257 FAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNG-KWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDS 335 (357)
T ss_dssp EECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC----CEEEEECSSCCBSSEEEEETTEEEEEEEECGGGCEEEEE
T ss_pred EEcCccccCCcccccccceeccccccceeeEEEEecCCC-ceeeCCCCCCCcccceeEEeCCEEEEEeeeCCCCCEeeeE
Confidence 777632 25778998873 35555554433333344557888888888653 35
Q ss_pred EEEeCCCC
Q 001039 1114 SLFHRPQE 1121 (1179)
Q Consensus 1114 ~iwd~~~~ 1121 (1179)
.++++.++
T Consensus 336 ~~l~~~~~ 343 (357)
T 2uvk_A 336 VLITVKDN 343 (357)
T ss_dssp EEEEC-CC
T ss_pred EEEEEcCc
Confidence 55576643
No 329
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=95.47 E-value=2.2 Score=47.97 Aligned_cols=217 Identities=10% Similarity=0.058 Sum_probs=109.9
Q ss_pred ceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEec---cccccEE--EEecC---CCEEEEEe
Q 001039 829 AITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLK---GHTRTVR--AINSD---RGKVVSGS 900 (1179)
Q Consensus 829 ~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~---~h~~~v~--~~s~d---~~~l~sgs 900 (1179)
.-++++|. +||+++++ ..+|.|++++ . .....+..+. ....... +++++ +..|+.+.
T Consensus 32 ~P~~ia~~------------pdG~l~V~-e~~g~I~~i~-~-g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~ 96 (352)
T 2ism_A 32 VPWALAFL------------PDGGMLIA-ERPGRIRLFR-E-GRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYR 96 (352)
T ss_dssp CEEEEEEC------------TTSCEEEE-ETTTEEEEEE-T-TEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEE
T ss_pred CceEEEEc------------CCCeEEEE-eCCCeEEEEE-C-CCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEE
Confidence 34677776 88986555 5669999998 3 2222222221 1112223 56777 55665554
Q ss_pred CC------CcEEEEECCCCe-----EE-EEee---cCCCcEEEEEEe-CCCEEEEEEc-------------CCeEEEEeC
Q 001039 901 DD------QSVLVWDKQTSQ-----LL-EELK---GHDAQVSCVRML-SGERVLTASH-------------DGTVKMWDV 951 (1179)
Q Consensus 901 ~d------g~I~iwd~~t~~-----~~-~~~~---~h~~~V~~l~~s-~~~~l~sgs~-------------dg~I~iwd~ 951 (1179)
.. +.|..|+...++ .+ ..+. +.......++|. ++..+++.+. .|.|.-+|.
T Consensus 97 ~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~ 176 (352)
T 2ism_A 97 TVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTP 176 (352)
T ss_dssp EECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECT
T ss_pred ecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcC
Confidence 32 678888876542 11 1233 111223578887 4544444322 145666665
Q ss_pred CCC--------------eEEEEeccCCCcEEEEEEcC-CCCEEEEEeCCCe--------EEEEeCCCCc-----------
Q 001039 952 RTD--------------TCVATVGRCSSAVLCMEYDD-STGILAAGGRDAV--------ANIWDIRAGR----------- 997 (1179)
Q Consensus 952 ~~~--------------~~~~~~~~~~~~v~~l~~sp-~~~~l~sgs~dg~--------I~iwD~~~~~----------- 997 (1179)
... ..+... ++ .....++|+| ++.++++-...+. |.+.. .+.
T Consensus 177 dG~~p~~npf~~~~~~~~~i~a~-G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~--~G~nyGwp~~~g~~ 252 (352)
T 2ism_A 177 EGEPAPGNPFLGRRGARPEVYSL-GH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIV--PGGNYGWPRVVGRG 252 (352)
T ss_dssp TSSBCTTCTTTTCTTSCTTEEEE-CC-SEECCCEECTTTCCEEEEEECC------CCCEEEEEC--TTCBCCTTTCCSCC
T ss_pred CCCCCCCCcccCCCCCCccEEEE-cC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEec--cCCcCCCCcccCCC
Confidence 420 011111 11 2356789999 5665544333222 33332 221
Q ss_pred -------eeEEeecCCCCeEEEEE-cCCEEEEEeCCCcEEEEEccCCee------eEEeecCCcCEEEEEEecCCCEEEE
Q 001039 998 -------QMHKFLGHTKWIRSIRM-DRDTVITGSDDWTARMWSISRGTC------DAVLACHAGPVQCVEYSSSDRGIIT 1063 (1179)
Q Consensus 998 -------~~~~~~~~~~~I~sl~~-~~~~l~sgs~dg~I~iwd~~~~~~------~~~~~~h~~~V~~l~~spdg~~l~s 1063 (1179)
++..+ .+......+++ .++.+++....+.|...+++.... ...+......+..+++.|||...++
T Consensus 253 ~~~~~~~p~~~~-~~~~ap~G~~~~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~ 331 (352)
T 2ism_A 253 NDPRYRDPLYFW-PQGFPPGNLAFFRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVT 331 (352)
T ss_dssp CCTTSCCCSEEC-TTCCCEEEEEEETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEE
T ss_pred CCCCCcCCeEec-CCCCCCcceEEECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEE
Confidence 12222 22223455665 454555555666777777654321 1222223467889999999977666
Q ss_pred Ee
Q 001039 1064 GS 1065 (1179)
Q Consensus 1064 gs 1065 (1179)
..
T Consensus 332 ~~ 333 (352)
T 2ism_A 332 TS 333 (352)
T ss_dssp EC
T ss_pred Ee
Confidence 54
No 330
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=95.25 E-value=0.23 Score=54.26 Aligned_cols=221 Identities=14% Similarity=0.068 Sum_probs=122.6
Q ss_pred cEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEeccCC
Q 001039 885 TVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCS 964 (1179)
Q Consensus 885 ~v~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~ 964 (1179)
.|..++....+.+.-. ||.|..|-....-.+..-......|..++......++. . ||.|..|-....-.+..-....
T Consensus 25 ~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l-~-~G~v~~wG~n~~Gqlg~P~~~~ 101 (282)
T 3qhy_B 25 GVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLAL-K-DGEVIAWGGNEDGQTTVPAEAR 101 (282)
T ss_dssp SCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEE-E-TTEEEEEECCTTSTTCCCGGGS
T ss_pred CCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEE-E-CCEEEEeeCCCCCCCCCCcccC
Confidence 5666766666655556 89999997554211111111223566666655555555 5 9999999765422211111123
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcCCEEEEEeCCCcEEEEEccCCeeeEEeec
Q 001039 965 SAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLAC 1044 (1179)
Q Consensus 965 ~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 1044 (1179)
..|..++...+. .++-. ||.|+.|-....-.+..-......|..++......+.-. ||.|..|-......+..-..
T Consensus 102 ~~v~~ia~G~~h--s~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~p~~ 177 (282)
T 3qhy_B 102 SGVDAIAAGAWA--SYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTVPAE 177 (282)
T ss_dssp SSEEEEEEETTE--EEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSCCGG
T ss_pred CCeEEEECcCCE--EEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCCcee
Confidence 467777765443 33344 899999976543222111122346778877666555555 89999997654221111111
Q ss_pred CCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEEecCCCEEEEEECCCcEEEEeCC
Q 001039 1045 HAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRP 1119 (1179)
Q Consensus 1045 h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~lasgs~Dg~I~iwd~~ 1119 (1179)
-...|..++...+ ..+.- .||.|+.|-....++... .......|..++......++-. ||.|+.|-..
T Consensus 178 ~~~~v~~i~~G~~--hs~al-~~G~v~~wG~n~~gqlg~---p~~~~~~v~~i~~G~~h~~al~-~g~v~~wG~n 245 (282)
T 3qhy_B 178 AQSGVDDVAGGIF--HSLAL-KDGKVIAWGDNRYKQTTV---PTEALSGVSAIASGEWYSLALK-NGKVIAWGSS 245 (282)
T ss_dssp GGSSEEEEEECSS--EEEEE-ETTEEEEEECCTTSTTCC---CGGGGSSCCEEEECSSCEEEEE-TTEEEEESTT
T ss_pred cCCCeEEEEecCC--EEEEE-ECCeEEEEECCCCCCCCC---CcccCCCceEEEcCCCEEEEEE-CCEEEEecCC
Confidence 1345777765433 22333 599999998765433221 1112234667765555444445 9999999755
No 331
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=95.08 E-value=6.1 Score=44.94 Aligned_cols=245 Identities=9% Similarity=0.070 Sum_probs=135.7
Q ss_pred EEEEEEeCCCEEEEEEcCCeEEEEeCCCC--------e---EEEEecc-CCCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 001039 926 VSCVRMLSGERVLTASHDGTVKMWDVRTD--------T---CVATVGR-CSSAVLCMEYDDSTGILAAGGRDAVANIWDI 993 (1179)
Q Consensus 926 V~~l~~s~~~~l~sgs~dg~I~iwd~~~~--------~---~~~~~~~-~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~ 993 (1179)
+..++. .....+.-..||.|..|-.... . ....+.. ....+..++++......++-+.||.|+.|-.
T Consensus 55 i~~i~~-G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~ 133 (389)
T 3kci_A 55 PVQLIG-GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGE 133 (389)
T ss_dssp EEEEEE-ETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEEC
T ss_pred eEEEEe-CCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeC
Confidence 444432 3455666678999999964321 1 1112221 2334566777777777777788999999965
Q ss_pred CCCc-----------eeEEeec-CCCCeEEEEEcCCEEEEEeCCCcEEEEEccCC-e----------eeEEee-cCCcCE
Q 001039 994 RAGR-----------QMHKFLG-HTKWIRSIRMDRDTVITGSDDWTARMWSISRG-T----------CDAVLA-CHAGPV 1049 (1179)
Q Consensus 994 ~~~~-----------~~~~~~~-~~~~I~sl~~~~~~l~sgs~dg~I~iwd~~~~-~----------~~~~~~-~h~~~V 1049 (1179)
...- ....+.. ....|..++......++-..||.|+.|-.... + ....+. .....|
T Consensus 134 n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v 213 (389)
T 3kci_A 134 AEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRV 213 (389)
T ss_dssp CGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCE
T ss_pred CCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeE
Confidence 4210 1111211 22367888888888888889999999965321 0 111111 123456
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEEcCCCCcc--------eEEEeec-ccCceEEEEecCCCEEEEEECCCcEEEEeCCC
Q 001039 1050 QCVEYSSSDRGIITGSSDGLLRFWENDDAGGI--------KCVKNVT-IHSSAILSINAGDHWLGIGAADNSMSLFHRPQ 1120 (1179)
Q Consensus 1050 ~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~--------~~~~~~~-~h~~~i~sis~dg~~lasgs~Dg~I~iwd~~~ 1120 (1179)
..++........+.-..||.|+.|-....+++ .....+. .....|..++......++-..||.|+.|-...
T Consensus 214 ~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~ 293 (389)
T 3kci_A 214 VDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGD 293 (389)
T ss_dssp EEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCG
T ss_pred EEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCC
Confidence 67766543456667778999999975432211 1111111 12235777777777777778999999997643
Q ss_pred CCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001039 1121 ERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEAT 1176 (1179)
Q Consensus 1121 ~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~ 1176 (1179)
.-.. +.+.......+..........|..++.... ..+....||.|..|-..
T Consensus 294 ~GqL---G~g~~~~~~~P~~v~~l~~~~v~~ia~G~~--h~~al~~~G~v~~wG~n 344 (389)
T 3kci_A 294 YHRL---GHGSDDHVRRPRQVQGLQGKKVIAIATGSL--HCVCCTEDGEVYTWGDN 344 (389)
T ss_dssp GGTT---CSSSCCCEEEEEECGGGTTCCEEEEEECSS--EEEEEETTCCEEEEECC
T ss_pred CCCC---CCCCCccccCCeEeccCCCCCEEEEEeccC--eEEEECCCCCEEEeeCC
Confidence 2111 111111111111111112234666665432 33445788999999654
No 332
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=94.77 E-value=3.9 Score=45.85 Aligned_cols=172 Identities=7% Similarity=0.043 Sum_probs=92.3
Q ss_pred cCCeEEEEeCCC--CeEEE-Eecc-----CCCcEEEEEEcC--CCC-EEEEEe-C--CCeEEEEeCCCCc----eeEEee
Q 001039 942 HDGTVKMWDVRT--DTCVA-TVGR-----CSSAVLCMEYDD--STG-ILAAGG-R--DAVANIWDIRAGR----QMHKFL 1003 (1179)
Q Consensus 942 ~dg~I~iwd~~~--~~~~~-~~~~-----~~~~v~~l~~sp--~~~-~l~sgs-~--dg~I~iwD~~~~~----~~~~~~ 1003 (1179)
.+|.|.++|..+ ++... .+.+ ..-....+.+.+ ++. +|+++. . +..|.+|++.... .+..+.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 689999999874 33211 1222 123566777755 343 344443 2 4677787765432 123333
Q ss_pred cC-CCCeEEEEEcC--CEEEEEe-----------------CCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEE
Q 001039 1004 GH-TKWIRSIRMDR--DTVITGS-----------------DDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIIT 1063 (1179)
Q Consensus 1004 ~~-~~~I~sl~~~~--~~l~sgs-----------------~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s 1063 (1179)
+. -...+.+.+++ .+.++.. ..|.|.-+|. ++.. .+...-..-+.++|+||++.++.
T Consensus 161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~-~~~~~l~~pNGia~spDg~~lYv 237 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVR-VVAEGFDFANGINISPDGKYVYI 237 (355)
T ss_dssp CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCE-EEEEEESSEEEEEECTTSSEEEE
T ss_pred cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEE-EeecCCcccCcceECCCCCEEEE
Confidence 32 23567777744 3444433 1244544543 4322 23223356789999999988877
Q ss_pred Ee-CCCcEEEEEcCCCCcceEEEeecccCceE--EEEec-CCCEEEEEECC-CcEEEEe
Q 001039 1064 GS-SDGLLRFWENDDAGGIKCVKNVTIHSSAI--LSINA-GDHWLGIGAAD-NSMSLFH 1117 (1179)
Q Consensus 1064 gs-~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i--~sis~-dg~~lasgs~D-g~I~iwd 1117 (1179)
+. ..+.|..|+++..+.......+.. .... .++.. +|++.+++..+ +.|..|+
T Consensus 238 adt~~~~I~~~~~~~~g~l~~~~~~~~-~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~ 295 (355)
T 3sre_A 238 AELLAHKIHVYEKHANWTLTPLRVLSF-DTLVDNISVDPVTGDLWVGCHPNGMRIFFYD 295 (355)
T ss_dssp EEGGGTEEEEEEECTTSCEEEEEEEEC-SSEEEEEEECTTTCCEEEEEESCHHHHHSCC
T ss_pred EeCCCCeEEEEEECCCCcEecCEEEeC-CCCCceEEEeCCCCcEEEEecCCceEEEEEC
Confidence 65 578899999875433333333311 2222 45566 47776655543 3444443
No 333
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=94.66 E-value=7.2 Score=43.73 Aligned_cols=228 Identities=11% Similarity=0.014 Sum_probs=116.3
Q ss_pred CCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCe-EEEEec---cCCCcEEEEEEcCC---CCEEEEEeC----C----Ce
Q 001039 923 DAQVSCVRMLSGERVLTASHDGTVKMWDVRTDT-CVATVG---RCSSAVLCMEYDDS---TGILAAGGR----D----AV 987 (1179)
Q Consensus 923 ~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~-~~~~~~---~~~~~v~~l~~sp~---~~~l~sgs~----d----g~ 987 (1179)
-...+.++|.++..++++..+|.|.++| .+++ .+..+. ........++++|+ +..|.++.. + +.
T Consensus 28 l~~P~~ia~~pdG~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp CSCEEEEEEEETTEEEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCCeEEEEcCCCeEEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 3457888998655677788889999997 4554 222221 12356889999997 555555443 2 56
Q ss_pred EEEEeCCCC--c-----ee-EEeec-CCCCeEEEEEcC--CEEEEEeC-------------CCcEEEEEccCC-------
Q 001039 988 ANIWDIRAG--R-----QM-HKFLG-HTKWIRSIRMDR--DTVITGSD-------------DWTARMWSISRG------- 1036 (1179)
Q Consensus 988 I~iwD~~~~--~-----~~-~~~~~-~~~~I~sl~~~~--~~l~sgs~-------------dg~I~iwd~~~~------- 1036 (1179)
|..|+.... . .+ ..+.. .......+++++ .++++.+. .|.|.-++.+..
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf 186 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPF 186 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSS
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCC
Confidence 778876644 1 11 11221 111234577744 34444322 245555554321
Q ss_pred -eeeEEeecCCcCEEEEEEec-CCCEEEEEeCCC---cEEEEEcCCCCc---------------ceEEEee-cccCceE-
Q 001039 1037 -TCDAVLACHAGPVQCVEYSS-SDRGIITGSSDG---LLRFWENDDAGG---------------IKCVKNV-TIHSSAI- 1094 (1179)
Q Consensus 1037 -~~~~~~~~h~~~V~~l~~sp-dg~~l~sgs~Dg---~I~iwd~~~~~~---------------~~~~~~~-~~h~~~i- 1094 (1179)
.......++. ....++|+| +|+..++-...+ .|.+. ..+.. ...+..+ ..+..+.
T Consensus 187 ~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G 263 (354)
T 3a9g_A 187 PNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNII--LKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSG 263 (354)
T ss_dssp TTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEE
T ss_pred CCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcc
Confidence 0111112332 346899999 566555433222 13332 22110 0112222 1122111
Q ss_pred EEE-------ecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEe
Q 001039 1095 LSI-------NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGG 1165 (1179)
Q Consensus 1095 ~si-------s~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs 1165 (1179)
..+ ..+|.++++.-..+.|...++... |. .. .....+.+....+.++++.|||.+.++..
T Consensus 264 ~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~--------g~-~~--~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 264 ASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDN--------ME-VR--KISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEECCSSSCGGGTTEEEEEETTTTEEEEEEECGG--------GC-EE--EEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred eEEECCCCCcccCCcEEEEEcCCCEEEEEEECCC--------Cc-cc--ceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 222 146767666666677877777531 11 10 01111222345789999999998777664
No 334
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=94.60 E-value=0.62 Score=50.74 Aligned_cols=221 Identities=14% Similarity=0.097 Sum_probs=119.3
Q ss_pred cEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeec
Q 001039 925 QVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLG 1004 (1179)
Q Consensus 925 ~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~ 1004 (1179)
.|..++......++. . ||.|..|-....-.+..-......|..++...+.. ++. . ||.++.|-....-.+..-..
T Consensus 25 ~i~~ia~G~~h~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gqlg~P~~ 99 (282)
T 3qhy_B 25 GVDAIAGGYFHGLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQTTVPAE 99 (282)
T ss_dssp SCCEEEECSSEEEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEE-EEE-E-TTEEEEEECCTTSTTCCCGG
T ss_pred CCcEEEeCCCeEEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCCCCCCcc
Confidence 466666554444444 5 89999997654321111111233566666654432 333 4 89999997654322211111
Q ss_pred CCCCeEEEEEcCCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEE
Q 001039 1005 HTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCV 1084 (1179)
Q Consensus 1005 ~~~~I~sl~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~ 1084 (1179)
-...|..++......+.-. ||.|+.|-....-.+..-......|..++...+ ..+.-. ||.|..|-....++...
T Consensus 100 ~~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~~gqlg~- 174 (282)
T 3qhy_B 100 ARSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVY--TALAVK-NGGVIAWGDNYFGQTTV- 174 (282)
T ss_dssp GSSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEEE-TTEEEEEECCTTSTTSC-
T ss_pred cCCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccC--EEEEEE-CCEEEEecCCCCCCCCC-
Confidence 1346888888777766667 999999976542211111112345666665432 333334 79999998766433321
Q ss_pred EeecccCceEEEEecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEE
Q 001039 1085 KNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSG 1164 (1179)
Q Consensus 1085 ~~~~~h~~~i~sis~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasg 1164 (1179)
.......|..++......++- .||.|+.|-....-. -|. +......|..++-..+. .+|..
T Consensus 175 --p~~~~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gq-----lg~----------p~~~~~~v~~i~~G~~h-~~al~ 235 (282)
T 3qhy_B 175 --PAEAQSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQ-----TTV----------PTEALSGVSAIASGEWY-SLALK 235 (282)
T ss_dssp --CGGGGSSEEEEEECSSEEEEE-ETTEEEEEECCTTST-----TCC----------CGGGGSSCCEEEECSSC-EEEEE
T ss_pred --ceecCCCeEEEEecCCEEEEE-ECCeEEEEECCCCCC-----CCC----------CcccCCCceEEEcCCCE-EEEEE
Confidence 111234677887665555555 699999997653210 110 00111246666654433 33333
Q ss_pred eCCCcEEEEECC
Q 001039 1165 GRNGLLRLWEAT 1176 (1179)
Q Consensus 1165 s~Dg~I~vWdv~ 1176 (1179)
||.|..|--.
T Consensus 236 --~g~v~~wG~n 245 (282)
T 3qhy_B 236 --NGKVIAWGSS 245 (282)
T ss_dssp --TTEEEEESTT
T ss_pred --CCEEEEecCC
Confidence 8888888543
No 335
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.51 E-value=0.57 Score=58.25 Aligned_cols=190 Identities=13% Similarity=0.103 Sum_probs=106.9
Q ss_pred CCCEEEEEeCC----CcEEEEcCCCCCceeEE-E-----eccccccEEEEec--CCCEEEEEeCC------CcEEEEECC
Q 001039 850 DAGFFISGSTD----CLVKIWDPSLRGSELRA-T-----LKGHTRTVRAINS--DRGKVVSGSDD------QSVLVWDKQ 911 (1179)
Q Consensus 850 d~~~Lasgs~D----g~I~lWd~~~~~~~~~~-~-----l~~h~~~v~~~s~--d~~~l~sgs~d------g~I~iwd~~ 911 (1179)
++.+++.||.+ ..+.+||.......... . .........+..- ++..++.||.+ ..+.+||..
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~ 476 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMK 476 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETT
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCC
Confidence 46677777753 46888887654444333 1 1111111112223 77777777643 357889988
Q ss_pred CCeEEEE--eecCCCcEEEEEEeCCCEEEEEEcCC--eEEEEeCCCCeEEEEec-----cCCCcEEEEEEcCC-CCEEEE
Q 001039 912 TSQLLEE--LKGHDAQVSCVRMLSGERVLTASHDG--TVKMWDVRTDTCVATVG-----RCSSAVLCMEYDDS-TGILAA 981 (1179)
Q Consensus 912 t~~~~~~--~~~h~~~V~~l~~s~~~~l~sgs~dg--~I~iwd~~~~~~~~~~~-----~~~~~v~~l~~sp~-~~~l~s 981 (1179)
+.+-... +......-.++.+.++..++.|+.++ .+.+||..+++....-. .......++.+..+ ++.++.
T Consensus 477 t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~ 556 (695)
T 2zwa_A 477 TREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIIL 556 (695)
T ss_dssp TTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEE
T ss_pred CCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEE
Confidence 8654332 11111122223224777888887655 69999998876543321 11222233555555 667777
Q ss_pred EeC--C-----CeEEEEeCCCCce-----eEEee----cCCCCeEEEEEc-CCEEEEEeC--------CCcEEEEEccCC
Q 001039 982 GGR--D-----AVANIWDIRAGRQ-----MHKFL----GHTKWIRSIRMD-RDTVITGSD--------DWTARMWSISRG 1036 (1179)
Q Consensus 982 gs~--d-----g~I~iwD~~~~~~-----~~~~~----~~~~~I~sl~~~-~~~l~sgs~--------dg~I~iwd~~~~ 1036 (1179)
|+. + +.+.+||+.+... ...+. .......++.++ +..++.|+. ...+.+||..+.
T Consensus 557 GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~ 636 (695)
T 2zwa_A 557 GGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSE 636 (695)
T ss_dssp CCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTT
T ss_pred CCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCC
Confidence 765 2 4689999988761 12221 122233455566 667777764 346899999887
Q ss_pred eee
Q 001039 1037 TCD 1039 (1179)
Q Consensus 1037 ~~~ 1039 (1179)
+-.
T Consensus 637 ~W~ 639 (695)
T 2zwa_A 637 TLT 639 (695)
T ss_dssp EEE
T ss_pred eEE
Confidence 654
No 336
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.35 E-value=9.9 Score=44.25 Aligned_cols=61 Identities=5% Similarity=0.047 Sum_probs=38.2
Q ss_pred CCcEEEEEEeCCCEEEEEEcCC-eEEEEeCCCCeEE--EEecc------CCCcEEEEEEcCC---CCEEEEEe
Q 001039 923 DAQVSCVRMLSGERVLTASHDG-TVKMWDVRTDTCV--ATVGR------CSSAVLCMEYDDS---TGILAAGG 983 (1179)
Q Consensus 923 ~~~V~~l~~s~~~~l~sgs~dg-~I~iwd~~~~~~~--~~~~~------~~~~v~~l~~sp~---~~~l~sgs 983 (1179)
-...+.++|.++..++++...| .|.+++..+++.. ..+.. .......|+++|+ +..|.++.
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~ 98 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG 98 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence 3456789998544566666665 7988886655432 22221 2456789999995 55555544
No 337
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.31 E-value=7.5 Score=42.49 Aligned_cols=241 Identities=12% Similarity=0.075 Sum_probs=128.3
Q ss_pred CCCCEEEEEe--CCCcEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEEEeCC--------------CcEEEEECCC
Q 001039 849 EDAGFFISGS--TDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDD--------------QSVLVWDKQT 912 (1179)
Q Consensus 849 ~d~~~Lasgs--~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~sgs~d--------------g~I~iwd~~t 912 (1179)
.+++++.-.. .++.|...+.+ +... ..+.. ..+..++++|++|+-+... ..|+..+++.
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~d--g~~~-~~l~~--~~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg 97 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNID--GSNI-HKLSN--DTAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG 97 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETT--SCSC-EEEEE--EEEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTS
T ss_pred EeCCEEEEEeCCCCceEEEEcCC--CCCC-EEccC--CceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCC
Confidence 4566666554 24556656644 3332 22222 2345678999998877543 4677778776
Q ss_pred CeEEEEeecCCCcEEEEEEe-CCCEEEEEE----cCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeC-CC
Q 001039 913 SQLLEELKGHDAQVSCVRML-SGERVLTAS----HDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGR-DA 986 (1179)
Q Consensus 913 ~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs----~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~-dg 986 (1179)
++....... ... .++ .++.|+-.. .+..|...++..... ..+..+.. .+++++++.|.-.+. ..
T Consensus 98 ~~~~~l~~~---~~~--~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~-~~lt~~~~----~~~~~~g~~iy~t~~g~~ 167 (302)
T 3s25_A 98 HGSTVLDPD---PCI--YASLIGNYIYYLHYDTQTATSLYRIRIDGEEK-KKIKNHYL----FTCNTSDRYFYYNNPKNG 167 (302)
T ss_dssp CCCEEEECS---CEE--EEEEETTEEEEEEESSSSCEEEEEEETTSCCC-EEEESSCC----CCSEEETTEEEEECTTTC
T ss_pred CcceEeecC---Ccc--EEEEeCCEEEEEeecCCCCceEEEEECCCCCe-EEEeCCCc----eEeeEECCEEEEEeCCCc
Confidence 653332221 122 333 566666554 345566667664433 33333322 456778888876654 57
Q ss_pred eEEEEeCCCCceeEEeecCCCCeEEEEEcCCEEEEEeCC--CcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEE
Q 001039 987 VANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDD--WTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITG 1064 (1179)
Q Consensus 987 ~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~~l~sgs~d--g~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sg 1064 (1179)
.|...++..+.....+.+.. . ..+..+++.|+-...+ ..|..-++..+. ...+. ...+ ..|+|++++|.-+
T Consensus 168 ~Iy~~~l~g~~~~~l~~~~~-~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt--~~~~--~~~~~~g~~Iy~~ 240 (302)
T 3s25_A 168 QLYRYDTASQSEALFYDCNC-Y-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLT--EANI--EHYNVYGSLIFYQ 240 (302)
T ss_dssp CEEEEETTTTEEEEEECSCE-E-EEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECS--CSCE--EEEEEETTEEEEE
T ss_pred eEEEEECCCCCEEEEeCCCc-c-ceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEe--CCCc--ceEEECCCEEEEE
Confidence 88888887665443333211 1 1233366666655433 356666665544 33333 2233 3478889988765
Q ss_pred eC--CCcEEEEEcCCCCcceEEEeecccCceEEEEecCCCEEEEEEC-CCcEEEEe
Q 001039 1065 SS--DGLLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIGAA-DNSMSLFH 1117 (1179)
Q Consensus 1065 s~--Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~lasgs~-Dg~I~iwd 1117 (1179)
+. .+.|..-+++... .+.+.. + .+..+++.+.+|+-... .+.|..-+
T Consensus 241 ~~~~~~~i~~~~~DG~~-r~~l~~--~---~~~~i~i~~d~Iy~td~~~~~i~~~~ 290 (302)
T 3s25_A 241 RGGDNPALCVVKNDGTG-FKELAK--G---EFCNINVTSQYVYFTDFVSNKEYCTS 290 (302)
T ss_dssp ECSSSCEEEEEETTSCC-CEEEEE--S---CEEEEEECSSEEEEEETTTCCEEEEE
T ss_pred ECCCCcEEEEEECCCCc-cEEeeC--C---ccceEEEeCCEEEEEECCCCeEEEEE
Confidence 43 3455555655422 222221 1 24466667777665552 34444333
No 338
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=94.13 E-value=10 Score=43.33 Aligned_cols=286 Identities=13% Similarity=0.087 Sum_probs=155.2
Q ss_pred ccccEEEEecCCCEEEEEeCCCcEEEEECCC-C----------eEEEEeec-CCCcEEEEEEeCCCEEEEEEcCCeEEEE
Q 001039 882 HTRTVRAINSDRGKVVSGSDDQSVLVWDKQT-S----------QLLEELKG-HDAQVSCVRMLSGERVLTASHDGTVKMW 949 (1179)
Q Consensus 882 h~~~v~~~s~d~~~l~sgs~dg~I~iwd~~t-~----------~~~~~~~~-h~~~V~~l~~s~~~~l~sgs~dg~I~iw 949 (1179)
-...|..++..+.+.++-..||.|..|=... + .....+.. ....|..++......++....++.|..|
T Consensus 14 ~~~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~w 93 (406)
T 4d9s_A 14 PPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSW 93 (406)
T ss_dssp -CCCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEE
T ss_pred CccceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEE
Confidence 3456777887788888888899999995432 1 11112221 2235666665444444443334589999
Q ss_pred eCCCC---------e--EEEEecc-CCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-----------eEEeec-C
Q 001039 950 DVRTD---------T--CVATVGR-CSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQ-----------MHKFLG-H 1005 (1179)
Q Consensus 950 d~~~~---------~--~~~~~~~-~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~-----------~~~~~~-~ 1005 (1179)
-.... . ....+.. ....|..++.. ....++-..+|.|+.|-....-+ ...+.. .
T Consensus 94 G~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G--~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~ 171 (406)
T 4d9s_A 94 GWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACG--DSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFE 171 (406)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGT
T ss_pred cCCCCcCCCCCCCCccccceEecccCCCCEEEEEEC--hhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccC
Confidence 64321 0 1111111 22356666654 34455667899999997543111 111211 2
Q ss_pred CCCeEEEEEcCCEEEEEeCCCcEEEEEccCC----------ee-eEEeec-CCcCEEEEEEecCCCEEEEEeCCCcEEEE
Q 001039 1006 TKWIRSIRMDRDTVITGSDDWTARMWSISRG----------TC-DAVLAC-HAGPVQCVEYSSSDRGIITGSSDGLLRFW 1073 (1179)
Q Consensus 1006 ~~~I~sl~~~~~~l~sgs~dg~I~iwd~~~~----------~~-~~~~~~-h~~~V~~l~~spdg~~l~sgs~Dg~I~iw 1073 (1179)
...|..++......++-..||.|+.|-.... .. ...+.. ....|..++.. ..+.+.-+.+|.|+.|
T Consensus 172 ~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G--~~ht~~l~~~G~v~~w 249 (406)
T 4d9s_A 172 GIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACG--WRHTISVSYSGALYTY 249 (406)
T ss_dssp TCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEEC--SSEEEEEETTCCEEEE
T ss_pred CCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEEC--CCcEEEEcCCCCEEEe
Confidence 2368888888888888889999999964321 00 111111 12345555543 4455566789999999
Q ss_pred EcCCCCcc-------e-EEEeec-ccCceEEEEecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCC
Q 001039 1074 ENDDAGGI-------K-CVKNVT-IHSSAILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQK 1144 (1179)
Q Consensus 1074 d~~~~~~~-------~-~~~~~~-~h~~~i~sis~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~ 1144 (1179)
-....+++ . ....+. .....|..++......++-..||.|+.|-....-.. +.+..............
T Consensus 250 G~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqL---G~g~~~~~~~p~~v~~~ 326 (406)
T 4d9s_A 250 GWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQV---GVGNNLDQCSPVQVRFP 326 (406)
T ss_dssp ECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTT---CSSSSSCEEEEEEECCG
T ss_pred eCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCC---CCCCCCCCccCEEEecc
Confidence 76543211 1 111111 123457788877777777889999999976532111 11211111122222212
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001039 1145 TVAVVRCIASDLERKRICSGGRNGLLRLWEAT 1176 (1179)
Q Consensus 1145 h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~ 1176 (1179)
....|..++...+ .-+.-..||.|..|--.
T Consensus 327 ~~~~v~~va~G~~--hs~alt~~G~v~~wG~n 356 (406)
T 4d9s_A 327 DDQKVVQVSCGWR--HTLAVTERNNVFAWGRG 356 (406)
T ss_dssp GGCCEEEEEECSS--EEEEEETTSCEEEEECC
T ss_pred CCCcEEEEEeCCC--eEEEEeCCCCEEEecCC
Confidence 2345666665432 33445678899999653
No 339
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.76 E-value=1.3 Score=54.93 Aligned_cols=178 Identities=13% Similarity=0.131 Sum_probs=96.0
Q ss_pred CeEEEEeCCCCeEEEEe-c-------cCCCcEEEEEEcCCCCEEEEEeCC------CeEEEEeCCCCceeE--EeecCCC
Q 001039 944 GTVKMWDVRTDTCVATV-G-------RCSSAVLCMEYDDSTGILAAGGRD------AVANIWDIRAGRQMH--KFLGHTK 1007 (1179)
Q Consensus 944 g~I~iwd~~~~~~~~~~-~-------~~~~~v~~l~~sp~~~~l~sgs~d------g~I~iwD~~~~~~~~--~~~~~~~ 1007 (1179)
..+.+||..+++....- . .....-.++.+..+++.++.||.+ ..+.+||..+.+-.. .+.....
T Consensus 412 ~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~ 491 (695)
T 2zwa_A 412 NEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRF 491 (695)
T ss_dssp CCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCB
T ss_pred CcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcc
Confidence 34677777766544332 1 111122233332267777777743 358889988754322 2222223
Q ss_pred CeEEEEE-cCCEEEEEeCCC--cEEEEEccCCeeeEEee-----cCCcCEEEEEEecC-CCEEEEEeC--C-----CcEE
Q 001039 1008 WIRSIRM-DRDTVITGSDDW--TARMWSISRGTCDAVLA-----CHAGPVQCVEYSSS-DRGIITGSS--D-----GLLR 1071 (1179)
Q Consensus 1008 ~I~sl~~-~~~~l~sgs~dg--~I~iwd~~~~~~~~~~~-----~h~~~V~~l~~spd-g~~l~sgs~--D-----g~I~ 1071 (1179)
...++.+ ++..++.|+.++ .+.+||..+.+-...-. .......++.+..+ ++.++.|+. + +.+.
T Consensus 492 ~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~ 571 (695)
T 2zwa_A 492 RHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAI 571 (695)
T ss_dssp SCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEE
T ss_pred cceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEE
Confidence 3344554 667777777654 68999988875433221 11122233555655 667777765 2 3588
Q ss_pred EEEcCCCCc-----ceEEEeec-ccCceEEEEecC-CCEEEEEEC--------CCcEEEEeCCCC
Q 001039 1072 FWENDDAGG-----IKCVKNVT-IHSSAILSINAG-DHWLGIGAA--------DNSMSLFHRPQE 1121 (1179)
Q Consensus 1072 iwd~~~~~~-----~~~~~~~~-~h~~~i~sis~d-g~~lasgs~--------Dg~I~iwd~~~~ 1121 (1179)
+||+.+..- +..+.... .......++..+ +++++.|+. ...+.+||..+.
T Consensus 572 ~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~ 636 (695)
T 2zwa_A 572 IFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSE 636 (695)
T ss_dssp EEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTT
T ss_pred EEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCC
Confidence 999888541 33333311 111112222333 788888874 346889998754
No 340
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=93.74 E-value=3 Score=47.45 Aligned_cols=137 Identities=15% Similarity=0.190 Sum_probs=93.4
Q ss_pred CCCEEEEEEcCCeEEEEeCCCCeEEEEeccC----CCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-----------
Q 001039 933 SGERVLTASHDGTVKMWDVRTDTCVATVGRC----SSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGR----------- 997 (1179)
Q Consensus 933 ~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~----~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~----------- 997 (1179)
++..++.+- ++.||.-++..+...+.+... -..+..+..+|+|++||..+ +..|.|..+..+.
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHT
T ss_pred CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccc
Confidence 555555543 367787777644444444332 23678899999999998886 4688888887321
Q ss_pred -eeEEeec------CCCCeEEEEEcC-----CEEEEEeCCCcEEEEEccCCe--eeEEee---------cCCcCEEEEEE
Q 001039 998 -QMHKFLG------HTKWIRSIRMDR-----DTVITGSDDWTARMWSISRGT--CDAVLA---------CHAGPVQCVEY 1054 (1179)
Q Consensus 998 -~~~~~~~------~~~~I~sl~~~~-----~~l~sgs~dg~I~iwd~~~~~--~~~~~~---------~h~~~V~~l~~ 1054 (1179)
..+.+.- ...+|..+.|+| ..|++-..|++|++||+.... +. .+. .....|.+++|
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~F 187 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEF 187 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEE
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEE
Confidence 1123321 256799999965 489999999999999998632 22 222 22357899999
Q ss_pred ecCCCEEEEEe--CCCcEEE
Q 001039 1055 SSSDRGIITGS--SDGLLRF 1072 (1179)
Q Consensus 1055 spdg~~l~sgs--~Dg~I~i 1072 (1179)
..++-.|...+ ..|.|+-
T Consensus 188 g~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 188 SKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp CTTSSCEEEEECTTSCEEEE
T ss_pred cCCCcEEEEEecCCCCCEEE
Confidence 99888777755 7788764
No 341
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=93.65 E-value=7.6 Score=43.51 Aligned_cols=185 Identities=8% Similarity=0.095 Sum_probs=102.8
Q ss_pred cEEEEEEcCCCCEEEEE------------eCCCeEEEEeCCCCc-eeEE--eec-----CCCCeEEEEE----cCC-EEE
Q 001039 966 AVLCMEYDDSTGILAAG------------GRDAVANIWDIRAGR-QMHK--FLG-----HTKWIRSIRM----DRD-TVI 1020 (1179)
Q Consensus 966 ~v~~l~~sp~~~~l~sg------------s~dg~I~iwD~~~~~-~~~~--~~~-----~~~~I~sl~~----~~~-~l~ 1020 (1179)
....++..++|..++++ ..+|.|.++|..+.. .... +.+ ..-....+.+ ++. +|+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 44566677877554444 268999999987421 1222 222 1225556665 233 344
Q ss_pred EE-eC--CCcEEEEEccCCe----eeEEeecC-CcCEEEEEEecCCCEEEEEeC-----------------CCcEEEEEc
Q 001039 1021 TG-SD--DWTARMWSISRGT----CDAVLACH-AGPVQCVEYSSSDRGIITGSS-----------------DGLLRFWEN 1075 (1179)
Q Consensus 1021 sg-s~--dg~I~iwd~~~~~----~~~~~~~h-~~~V~~l~~spdg~~l~sgs~-----------------Dg~I~iwd~ 1075 (1179)
++ .. +.+|.+|++..+. .+..+.+. -...+.+.+.++|.+.++... .|.|.-+|.
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~ 210 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 210 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence 43 33 4678888776532 22233322 246889999999998777641 234444443
Q ss_pred CCCCcceEEEeecccCceEEEEecCCCEEEEEE-CCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEE
Q 001039 1076 DDAGGIKCVKNVTIHSSAILSINAGDHWLGIGA-ADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIAS 1154 (1179)
Q Consensus 1076 ~~~~~~~~~~~~~~h~~~i~sis~dg~~lasgs-~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~f 1154 (1179)
++ .+.+.. ......-.+++||++.+.++. ..+.|+.|++.. +|. +...+.. ...+..-.++.
T Consensus 211 --~~-~~~~~~-~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~--------~g~-l~~~~~~----~~~g~PDGi~v 273 (355)
T 3sre_A 211 --ND-VRVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHA--------NWT-LTPLRVL----SFDTLVDNISV 273 (355)
T ss_dssp --TC-CEEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT--------TSC-EEEEEEE----ECSSEEEEEEE
T ss_pred --Ce-EEEeec-CCcccCcceECCCCCEEEEEeCCCCeEEEEEECC--------CCc-EecCEEE----eCCCCCceEEE
Confidence 21 232211 112233467899998877765 568999999862 121 1111112 11355678888
Q ss_pred cC-CCCEEEEEeCC
Q 001039 1155 DL-ERKRICSGGRN 1167 (1179)
Q Consensus 1155 sp-dg~~Lasgs~D 1167 (1179)
.+ +|++.+++..+
T Consensus 274 D~e~G~lwva~~~~ 287 (355)
T 3sre_A 274 DPVTGDLWVGCHPN 287 (355)
T ss_dssp CTTTCCEEEEEESC
T ss_pred eCCCCcEEEEecCC
Confidence 88 58877766533
No 342
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=92.96 E-value=3.2 Score=47.23 Aligned_cols=149 Identities=10% Similarity=0.012 Sum_probs=89.7
Q ss_pred cCCEEEEEeCCCcEEEEEccCCeeeEEeecC----CcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCC---c-------
Q 001039 1015 DRDTVITGSDDWTARMWSISRGTCDAVLACH----AGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAG---G------- 1080 (1179)
Q Consensus 1015 ~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h----~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~---~------- 1080 (1179)
++..++.+- ++.||.-++......+.+... -..|..+..+|+|++||..+.. .|.|-.+..+. .
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHHHT
T ss_pred CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC-eEEEEEecCccccCcccccccc
Confidence 444444443 467887777755445555432 2367889999999999988554 68888887321 0
Q ss_pred ceEEEeecc------cCceEEEE--ec---CCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccE
Q 001039 1081 IKCVKNVTI------HSSAILSI--NA---GDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVV 1149 (1179)
Q Consensus 1081 ~~~~~~~~~------h~~~i~si--s~---dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V 1149 (1179)
.+ .+.+.- ....|..+ +| .+..|++-..|+.|++||+....-.. . .+...........+...|
T Consensus 109 ~q-~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P---~--~L~k~~~~fg~d~~~~ev 182 (452)
T 3pbp_A 109 FQ-IFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKP---I--VLNKPNNSFGLDARVNDI 182 (452)
T ss_dssp TE-EEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCC---E--EESCCCSEEESCSSCCCE
T ss_pred cc-eeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCC---c--chhccccccCCCcccceE
Confidence 11 122221 23456555 43 57899999999999999998421000 0 000000001223344679
Q ss_pred EEEEEcCCCCEEEEEe--CCCcEE
Q 001039 1150 RCIASDLERKRICSGG--RNGLLR 1171 (1179)
Q Consensus 1150 ~~v~fspdg~~Lasgs--~Dg~I~ 1171 (1179)
.+++|+.+|-.|...+ .+|-|+
T Consensus 183 ~S~~Fg~~~lTLYvl~~t~~GDIY 206 (452)
T 3pbp_A 183 TDLEFSKDGLTLYCLNTTEGGDIF 206 (452)
T ss_dssp EEEEECTTSSCEEEEECTTSCEEE
T ss_pred EEEEEcCCCcEEEEEecCCCCCEE
Confidence 9999999887777655 778775
No 343
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=92.38 E-value=15 Score=40.11 Aligned_cols=209 Identities=7% Similarity=-0.008 Sum_probs=113.3
Q ss_pred EecCCCEEEEEe--CCCcEEEEECCCCeEEEEeecCCCcEEEEEEeCCCEEEEEEc--------------CCeEEEEeCC
Q 001039 889 INSDRGKVVSGS--DDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASH--------------DGTVKMWDVR 952 (1179)
Q Consensus 889 ~s~d~~~l~sgs--~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s~~~~l~sgs~--------------dg~I~iwd~~ 952 (1179)
++.++.+++... .++.|...+.+.... ..+.. ..+..+. .+++.|+-+.. ...|+..++.
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~~-~~l~~--~~~~~i~-~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d 96 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDGSNI-HKLSN--DTAMYIN-ADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN 96 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTSCSC-EEEEE--EEEEEEE-ECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCCCCC-EEccC--CceeeEE-EcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence 345666665553 245566666543332 22221 1122221 14566554443 2467777877
Q ss_pred CCeEEEEeccCCCcEEEEEEcCCCCEEEEEe----CCCeEEEEeCCCCceeEEeecCCCCeEEEEEcCCEEEEEeC-CCc
Q 001039 953 TDTCVATVGRCSSAVLCMEYDDSTGILAAGG----RDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSD-DWT 1027 (1179)
Q Consensus 953 ~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs----~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~~l~sgs~-dg~ 1027 (1179)
.++...... .. +..++++++.|+-.. .+..|...++... ....+..+.. ..+.|+++.|+-.+. ...
T Consensus 97 g~~~~~l~~-~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs-~~~~lt~~~~--~~~~~~g~~iy~t~~g~~~ 168 (302)
T 3s25_A 97 GHGSTVLDP-DP----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGE-EKKKIKNHYL--FTCNTSDRYFYYNNPKNGQ 168 (302)
T ss_dssp SCCCEEEEC-SC----EEEEEEETTEEEEEEESSSSCEEEEEEETTSC-CCEEEESSCC--CCSEEETTEEEEECTTTCC
T ss_pred CCcceEeec-CC----ccEEEEeCCEEEEEeecCCCCceEEEEECCCC-CeEEEeCCCc--eEeeEECCEEEEEeCCCce
Confidence 665433322 11 236777888888765 3446666777643 3444444433 345777776665554 678
Q ss_pred EEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCC--cEEEEEcCCCCcceEEEeecccCceEEEEecCCCEEE
Q 001039 1028 ARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDG--LLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLG 1105 (1179)
Q Consensus 1028 I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg--~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~la 1105 (1179)
|..-++..+.....+. +... ..++|++++|+-...++ .|..-+++... ...+ . ...+..++|++.+|.
T Consensus 169 Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~L---t--~~~~~~~~~~g~~Iy 238 (302)
T 3s25_A 169 LYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVL---T--EANIEHYNVYGSLIF 238 (302)
T ss_dssp EEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEEC---S--CSCEEEEEEETTEEE
T ss_pred EEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEE---e--CCCcceEEECCCEEE
Confidence 8888887766544433 2222 34679999988766443 45555555422 2222 1 223456889999888
Q ss_pred EEEC--CCcEEEEeCC
Q 001039 1106 IGAA--DNSMSLFHRP 1119 (1179)
Q Consensus 1106 sgs~--Dg~I~iwd~~ 1119 (1179)
-++. .+.|..-++.
T Consensus 239 ~~~~~~~~~i~~~~~D 254 (302)
T 3s25_A 239 YQRGGDNPALCVVKND 254 (302)
T ss_dssp EEECSSSCEEEEEETT
T ss_pred EEECCCCcEEEEEECC
Confidence 6543 3556666654
No 344
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=91.21 E-value=22 Score=39.66 Aligned_cols=71 Identities=8% Similarity=0.133 Sum_probs=43.2
Q ss_pred CcEEEEEEeCCCE-EEEEEcCCeEEEEeCCCCeEEEEe-------ccCCCcEEEEEEcCC---CCEEEEEe-C-------
Q 001039 924 AQVSCVRMLSGER-VLTASHDGTVKMWDVRTDTCVATV-------GRCSSAVLCMEYDDS---TGILAAGG-R------- 984 (1179)
Q Consensus 924 ~~V~~l~~s~~~~-l~sgs~dg~I~iwd~~~~~~~~~~-------~~~~~~v~~l~~sp~---~~~l~sgs-~------- 984 (1179)
...+.++|.++.. ++++...|.|++++.. ++....+ .........++++|+ +..+.++. .
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 3567888885444 7777788999999853 4322111 112346789999996 45554443 2
Q ss_pred CCeEEEEeCCC
Q 001039 985 DAVANIWDIRA 995 (1179)
Q Consensus 985 dg~I~iwD~~~ 995 (1179)
...|..|+...
T Consensus 97 ~~~v~r~~~~~ 107 (353)
T 2g8s_A 97 GTAVGYGRLSD 107 (353)
T ss_dssp EEEEEEEEECT
T ss_pred eeEEEEEEECC
Confidence 23566666643
No 345
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=90.90 E-value=4 Score=42.14 Aligned_cols=169 Identities=6% Similarity=-0.075 Sum_probs=89.9
Q ss_pred EEEEEEcCCeEEEEeCCCCe------EEEEecc-CCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee------EEe
Q 001039 936 RVLTASHDGTVKMWDVRTDT------CVATVGR-CSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQM------HKF 1002 (1179)
Q Consensus 936 ~l~sgs~dg~I~iwd~~~~~------~~~~~~~-~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~------~~~ 1002 (1179)
+|++...| +++.=...++. ...++.. .=..+..++|+|+|.+.++ .+|.++-.+..+.... ..+
T Consensus 6 ~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~I 82 (236)
T 1tl2_A 6 MLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKI 82 (236)
T ss_dssp CEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEE
T ss_pred EEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEe
Confidence 45555565 55554444433 1223322 1236779999999986666 6788887776552211 111
Q ss_pred ecCC--CCeEEEEEcCC-EEEEEeCCCcEEEEEccCCee-------eEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEE
Q 001039 1003 LGHT--KWIRSIRMDRD-TVITGSDDWTARMWSISRGTC-------DAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRF 1072 (1179)
Q Consensus 1003 ~~~~--~~I~sl~~~~~-~l~sgs~dg~I~iwd~~~~~~-------~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~i 1072 (1179)
+.. ..-.++.++++ .|.++ .||.|+-++-.+... ...-.+--..+..+.+.|+|.+.+.. ||.++-
T Consensus 83 -G~~Gw~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr 158 (236)
T 1tl2_A 83 -GNGGWNQFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYK 158 (236)
T ss_dssp -ECSCGGGCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEE
T ss_pred -cccccccceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEe
Confidence 111 11357778766 33333 679998887533111 11111112467999999999877766 777543
Q ss_pred EEcCCCC------cceEEEeecccCceEEEEecCCCEEEEEECCCcE
Q 001039 1073 WENDDAG------GIKCVKNVTIHSSAILSINAGDHWLGIGAADNSM 1113 (1179)
Q Consensus 1073 wd~~~~~------~~~~~~~~~~h~~~i~sis~dg~~lasgs~Dg~I 1113 (1179)
+...... ....+..-..|.-.++.+.+++.+.++. +|.+
T Consensus 159 ~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 159 ALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKF 203 (236)
T ss_dssp ECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred cCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeE
Confidence 3322211 0111111122333445567788777766 6643
No 346
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=89.10 E-value=18 Score=42.56 Aligned_cols=263 Identities=10% Similarity=0.027 Sum_probs=139.4
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEeecCC-------------------------CcE--EEEEEeC----CCEEEEEE-cC
Q 001039 896 VVSGSDDQSVLVWDKQTSQLLEELKGHD-------------------------AQV--SCVRMLS----GERVLTAS-HD 943 (1179)
Q Consensus 896 l~sgs~dg~I~iwd~~t~~~~~~~~~h~-------------------------~~V--~~l~~s~----~~~l~sgs-~d 943 (1179)
+.||+..|.|+|+-+-+++.+..+.... +.. ..+.+.+ |.+++.-. .+
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 7788999999999999999888764211 111 1344443 45566655 46
Q ss_pred CeEEEEeCCCCeEEEEecc-CCCcEEEEEEc--CCCCEEEEEeC-------CCeEEEEeCCCCceeEE---eecCCCCe-
Q 001039 944 GTVKMWDVRTDTCVATVGR-CSSAVLCMEYD--DSTGILAAGGR-------DAVANIWDIRAGRQMHK---FLGHTKWI- 1009 (1179)
Q Consensus 944 g~I~iwd~~~~~~~~~~~~-~~~~v~~l~~s--p~~~~l~sgs~-------dg~I~iwD~~~~~~~~~---~~~~~~~I- 1009 (1179)
..|...+++..++-+.+.- ....+..+.+- |+..++++++. ||.. .++...+.-.. +.+.+-.|
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~--~~~~~~~~y~~f~~iD~~tm~v~ 230 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKV--FDLQDENSYTMYNAIDAETMEMA 230 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSC--CCTTSTTEEEEEEEEETTTCSEE
T ss_pred cceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcc--cccCChhhceEEEEEcCCccEEE
Confidence 7788888888887666543 34667888886 68888888874 2321 10011111111 11111111
Q ss_pred EEEEEc-----------CCEEEEEeCC---------------CcEEEEE-------------------------ccC---
Q 001039 1010 RSIRMD-----------RDTVITGSDD---------------WTARMWS-------------------------ISR--- 1035 (1179)
Q Consensus 1010 ~sl~~~-----------~~~l~sgs~d---------------g~I~iwd-------------------------~~~--- 1035 (1179)
+.+..+ +.+.++.+.+ ..+.+++ .+.
T Consensus 231 ~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~ 310 (638)
T 3sbq_A 231 FQVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDG 310 (638)
T ss_dssp EEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTT
T ss_pred EEEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccccccc
Confidence 111111 2233333211 1233333 322
Q ss_pred -CeeeEEeecCCcCEEEEEEecCCCEEEEEe-CCCcEEEEEcCCC------C---c-ceEEEeec-ccCceEEEEecCCC
Q 001039 1036 -GTCDAVLACHAGPVQCVEYSSSDRGIITGS-SDGLLRFWENDDA------G---G-IKCVKNVT-IHSSAILSINAGDH 1102 (1179)
Q Consensus 1036 -~~~~~~~~~h~~~V~~l~~spdg~~l~sgs-~Dg~I~iwd~~~~------~---~-~~~~~~~~-~h~~~i~sis~dg~ 1102 (1179)
+.....+-.-......+..+|||+++++++ .+.++.++|++.- + . ........ +-...-+.+.++|.
T Consensus 311 ~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~ 390 (638)
T 3sbq_A 311 KDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGN 390 (638)
T ss_dssp BCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSE
T ss_pred cCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCc
Confidence 111111111223345788899999988776 5888999998841 1 0 01122222 22223367778886
Q ss_pred EEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEE-----EcCCCCEEEEEe
Q 001039 1103 WLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIA-----SDLERKRICSGG 1165 (1179)
Q Consensus 1103 ~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~-----fspdg~~Lasgs 1165 (1179)
...+-.-|..|.-|++... ...+ .|.. .+..+....-|-.+-...+ -.+||++|++..
T Consensus 391 aYTtlfidSqvvkWni~~a-~~~~--~g~~--~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 391 AYTTLFIDSQVVKWNMEEA-VRAY--KGEK--VNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEEEETTTTEEEEEEHHHH-HHHH--TTCC--CCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred eEeeeeecceEEEEeccHH-HHHh--cCcc--CCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence 5566668999999998631 0111 1222 1234444443433221111 257888888873
No 347
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=88.78 E-value=32 Score=37.90 Aligned_cols=266 Identities=12% Similarity=0.037 Sum_probs=134.5
Q ss_pred CEEEEEeCCCcEEEEECCC-------CeEEE--EeecCCCcEEEEEE-eCCCEEEEEEcCCeEEEEe---CCC------C
Q 001039 894 GKVVSGSDDQSVLVWDKQT-------SQLLE--ELKGHDAQVSCVRM-LSGERVLTASHDGTVKMWD---VRT------D 954 (1179)
Q Consensus 894 ~~l~sgs~dg~I~iwd~~t-------~~~~~--~~~~h~~~V~~l~~-s~~~~l~sgs~dg~I~iwd---~~~------~ 954 (1179)
..+++.+.+|.|+--.+.+ |+-+. .++. .+.+..+.. +..+.++.-+..|.+.-.. +.. |
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke-~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G 82 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQ-DDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARG 82 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCCCG-GGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCC
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCC-CCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCC
Confidence 4567778888888665321 11111 1222 233433333 3667777778888765543 332 2
Q ss_pred eEEEEec--cCCCcEEEEEEcC---CCCEEEEEeCCCeEEEEeCCCC-------ceeEEeecCCCCeEEEEE-cCCEEEE
Q 001039 955 TCVATVG--RCSSAVLCMEYDD---STGILAAGGRDAVANIWDIRAG-------RQMHKFLGHTKWIRSIRM-DRDTVIT 1021 (1179)
Q Consensus 955 ~~~~~~~--~~~~~v~~l~~sp---~~~~l~sgs~dg~I~iwD~~~~-------~~~~~~~~~~~~I~sl~~-~~~~l~s 1021 (1179)
..+..+- .....|.++..-+ +..+++..+.+|.++-..+..- .....+.....-+..... ..+.++.
T Consensus 83 ~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill 162 (327)
T 3uc1_A 83 QHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLL 162 (327)
T ss_dssp EEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEE
T ss_pred EEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEE
Confidence 2221111 1234455554433 5778999999999999876542 222223333333333333 3457888
Q ss_pred EeCCCcEEEEEcc--C---------CeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCc----ceEEE-
Q 001039 1022 GSDDWTARMWSIS--R---------GTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGG----IKCVK- 1085 (1179)
Q Consensus 1022 gs~dg~I~iwd~~--~---------~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~----~~~~~- 1085 (1179)
.+.+|.+..+... . |.....+. ....|.++...+++.+++..+..|.++.-.+..-.. .+-+.
T Consensus 163 ~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~ 241 (327)
T 3uc1_A 163 VSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLT 241 (327)
T ss_dssp EETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEES
T ss_pred EECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEE
Confidence 8899998888766 2 11111122 345677777766777899999999998887654210 11121
Q ss_pred -eecccCceEEEE--ecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcC-CCCEE
Q 001039 1086 -NVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDL-ERKRI 1161 (1179)
Q Consensus 1086 -~~~~h~~~i~si--s~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fsp-dg~~L 1161 (1179)
.+......+..+ ..+...++..+.+|.+..++...-+..+....|. ..+ .+. ....|.+++..+ +..-+
T Consensus 242 ~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i~~~gR~a~GV-----~~i-~l~-~~d~vv~~~~~~~~~~~~ 314 (327)
T 3uc1_A 242 VMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGV-----RLM-NLG-EGDTLLAIARNAEESGDD 314 (327)
T ss_dssp SCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGSCBCCTTSCCE-----ECT-TCC-TTCCEEEEEECC------
T ss_pred EEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhhccccCCCCCCe-----EeE-ecC-CCCEEEEEEEcCCCcceE
Confidence 121112233332 2345567777888888888876443322222331 111 111 234566665543 34456
Q ss_pred EEEeCCC
Q 001039 1162 CSGGRNG 1168 (1179)
Q Consensus 1162 asgs~Dg 1168 (1179)
.+.+.+|
T Consensus 315 ~~~~~~g 321 (327)
T 3uc1_A 315 NAVDANG 321 (327)
T ss_dssp -------
T ss_pred EEEecCC
Confidence 6666555
No 348
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=88.62 E-value=34 Score=38.07 Aligned_cols=221 Identities=12% Similarity=0.058 Sum_probs=112.0
Q ss_pred CceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEec---cccccEE--EEecC---CCEEEEE
Q 001039 828 GAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLK---GHTRTVR--AINSD---RGKVVSG 899 (1179)
Q Consensus 828 ~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~---~h~~~v~--~~s~d---~~~l~sg 899 (1179)
..-++++|. +||+++++ ..+|.|++++.. +...+..+. ....... +++|+ +..|+.+
T Consensus 29 ~~P~~ia~~------------pdG~l~V~-e~~g~I~~~d~~--G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~ 93 (354)
T 3a9g_A 29 EVPWSIAPL------------GGGRYLVT-ERPGRLVLISPS--GKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLY 93 (354)
T ss_dssp SCEEEEEEE------------ETTEEEEE-ETTTEEEEECSS--CEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEE
T ss_pred CCCeEEEEc------------CCCeEEEE-eCCCEEEEEeCC--CceEeeccceeecCCCceeeEEeCCCCCcCCEEEEE
Confidence 345778776 78875554 556999999733 222222221 1112233 56776 5566555
Q ss_pred eC----C----CcEEEEECCCC-------eEE-EEeec-CCCcEEEEEEe-CCCEEEEEEc-------------CCeEEE
Q 001039 900 SD----D----QSVLVWDKQTS-------QLL-EELKG-HDAQVSCVRML-SGERVLTASH-------------DGTVKM 948 (1179)
Q Consensus 900 s~----d----g~I~iwd~~t~-------~~~-~~~~~-h~~~V~~l~~s-~~~~l~sgs~-------------dg~I~i 948 (1179)
.. + +.|..|+...+ +.+ ..+.. .......++|. ++.++++.+. .|.|.-
T Consensus 94 ~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~r 173 (354)
T 3a9g_A 94 ASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILR 173 (354)
T ss_dssp EEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEE
T ss_pred EeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEE
Confidence 43 2 56777876654 111 11221 11123567887 5554444332 245555
Q ss_pred EeCCCC---------eEEEEeccCCCcEEEEEEcC-CCCEEEEEeCCC---eEEEEeCCC--------C--------cee
Q 001039 949 WDVRTD---------TCVATVGRCSSAVLCMEYDD-STGILAAGGRDA---VANIWDIRA--------G--------RQM 999 (1179)
Q Consensus 949 wd~~~~---------~~~~~~~~~~~~v~~l~~sp-~~~~l~sgs~dg---~I~iwD~~~--------~--------~~~ 999 (1179)
++.... ..+... ++ .....++|+| ++.++++-...+ .|.+..... + .++
T Consensus 174 i~~dG~~p~~npf~~~~i~a~-G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~ 251 (354)
T 3a9g_A 174 VDEEGRPPADNPFPNSPIWSY-GH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPV 251 (354)
T ss_dssp ECTTSCCCTTSSSTTCCEEEE-CC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCS
T ss_pred EcCCCCCCCCCCCCCCcEEEE-cc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCE
Confidence 555321 011111 22 2346799999 566544432221 244332111 0 122
Q ss_pred EEeecCCCCeEEEEE---------cCCEEEEEeCCCcEEEEEccCC-eee--EEee-cCCcCEEEEEEecCCCEEEEEe
Q 001039 1000 HKFLGHTKWIRSIRM---------DRDTVITGSDDWTARMWSISRG-TCD--AVLA-CHAGPVQCVEYSSSDRGIITGS 1065 (1179)
Q Consensus 1000 ~~~~~~~~~I~sl~~---------~~~~l~sgs~dg~I~iwd~~~~-~~~--~~~~-~h~~~V~~l~~spdg~~l~sgs 1065 (1179)
..+.........+++ +++++++....+.|...++... +.. ..+. +....+..+++.|||...++..
T Consensus 252 ~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 252 IDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred eecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 222112234566666 3445555556678888888753 222 2222 2245789999999997666654
No 349
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=88.39 E-value=35 Score=37.92 Aligned_cols=57 Identities=7% Similarity=0.019 Sum_probs=37.3
Q ss_pred CeEEEEEc---------CCEEEEEeCCCcEEEEEccCCeeeEE--e-ecCCcCEEEEEEecCCCEEEEE
Q 001039 1008 WIRSIRMD---------RDTVITGSDDWTARMWSISRGTCDAV--L-ACHAGPVQCVEYSSSDRGIITG 1064 (1179)
Q Consensus 1008 ~I~sl~~~---------~~~l~sgs~dg~I~iwd~~~~~~~~~--~-~~h~~~V~~l~~spdg~~l~sg 1064 (1179)
....+.+. ++++++....+.|...+++.++.... + ......+..+++.|||.+.++.
T Consensus 272 ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~t 340 (353)
T 2g8s_A 272 AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLT 340 (353)
T ss_dssp CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEE
T ss_pred CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEE
Confidence 45566662 44666666778888888876654332 2 2234578999999999866654
No 350
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=88.35 E-value=40 Score=38.48 Aligned_cols=242 Identities=13% Similarity=0.088 Sum_probs=130.5
Q ss_pred cEEEEEEeCCCEEEEEEcCCeEEEEeCCCC-e------------EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 001039 925 QVSCVRMLSGERVLTASHDGTVKMWDVRTD-T------------CVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIW 991 (1179)
Q Consensus 925 ~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~-~------------~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iw 991 (1179)
.|..++. .+.+.+.-..||.|..|-.... + ....+ .....|..++.. ....++-..||.|+.|
T Consensus 76 ~v~~va~-G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v-~~~~~i~~va~G--~~hs~al~~~G~v~~w 151 (423)
T 3mvd_K 76 DAVDISA-GGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLI-DLPGKALCISAG--DSHSACLLEDGRVFAW 151 (423)
T ss_dssp SEEEEEE-CSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEEC-CCSSCEEEEEEC--SSEEEEEETTSCEEEE
T ss_pred CceEEee-CCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEE-cCCCCEEEEEcC--cCeEEEEeCCCeEEEE
Confidence 4555543 3456667788999999965431 1 01111 123356665553 3445555788999999
Q ss_pred eC--CC-Cce---------eEEeecCCCCeEEEEEcCCEEEEEeCCCcEEEEEccCC-----------------------
Q 001039 992 DI--RA-GRQ---------MHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRG----------------------- 1036 (1179)
Q Consensus 992 D~--~~-~~~---------~~~~~~~~~~I~sl~~~~~~l~sgs~dg~I~iwd~~~~----------------------- 1036 (1179)
-. .. ++. ..........|..++......++-..||.|+.|-....
T Consensus 152 G~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~ 231 (423)
T 3mvd_K 152 GSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLL 231 (423)
T ss_dssp ECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTS
T ss_pred eCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCccccccccccccccccc
Confidence 75 22 211 11111234468888887888888889999999964321
Q ss_pred eeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcc--------eEEEeecccCceEEEEecCCCEEEEEE
Q 001039 1037 TCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGI--------KCVKNVTIHSSAILSINAGDHWLGIGA 1108 (1179)
Q Consensus 1037 ~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~--------~~~~~~~~h~~~i~sis~dg~~lasgs 1108 (1179)
.+..........|..++... ...++.-..||.|..|-....+++ ............|..++......++-.
T Consensus 232 ~p~~v~~~~~~~v~~i~~g~-~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G~~ht~alt 310 (423)
T 3mvd_K 232 RPTQLIITRAKPFEAIWATN-YCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQHHTVILT 310 (423)
T ss_dssp SCEEECCTTCCCEEEEEEET-TEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEECSSEEEEEE
T ss_pred CCeEEeecCCccEEEEEECC-cEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEcccCeEEEEe
Confidence 11111111233456665442 222333368899999975542211 111111122446778888778878888
Q ss_pred CCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001039 1109 ADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEAT 1176 (1179)
Q Consensus 1109 ~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~ 1176 (1179)
.||.|+.|-....-..+ .+..............-...|..|+...+ .-+.-..||.|+.|-..
T Consensus 311 ~~G~v~~wG~n~~GqLG---~g~~~~~~~~p~~v~~l~~~v~~ia~G~~--hs~alt~~G~v~~wG~n 373 (423)
T 3mvd_K 311 TDLKCSVVGRPEYGRLG---LGDVKDVVEKPTIVKKLTEKIVSVGCGEV--CSYAVTIDGKLYSWGSG 373 (423)
T ss_dssp TTCCEEEEECCGGGTTC---SSSCCSCEEEEEECTTCCSCEEEEEEETT--EEEEEETTSCEEEEECC
T ss_pred CCCcEEEEECCCCCCCC---CCCccccccCceEeccCCCCEEEEEcCCC--eEEEEcCCCCEEEECCC
Confidence 99999999764321111 11111111111122222226777776543 23334688999999654
No 351
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=87.50 E-value=15 Score=37.98 Aligned_cols=175 Identities=7% Similarity=-0.064 Sum_probs=92.0
Q ss_pred CCEEEEEeCCCeEEEEeCCCCc------eeEEeecC--CCCeEEEEEcCC-EEEEEeCCCcEEEEEccCCee------eE
Q 001039 976 TGILAAGGRDAVANIWDIRAGR------QMHKFLGH--TKWIRSIRMDRD-TVITGSDDWTARMWSISRGTC------DA 1040 (1179)
Q Consensus 976 ~~~l~sgs~dg~I~iwD~~~~~------~~~~~~~~--~~~I~sl~~~~~-~l~sgs~dg~I~iwd~~~~~~------~~ 1040 (1179)
...|++...| +++.=...++. ...++ +. -..+..++++|+ .|.+. .+|.++-.+..++.. -.
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~i-G~~gw~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t 80 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLI-GKGGWSNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAK 80 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEE-ESSSCTTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCE
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhcccc-CccccccceeEEECCCccEEEE-eCCeEEEECCCCCCccccccccc
Confidence 3456666666 65554444433 12222 22 236778999766 34444 677776666544211 11
Q ss_pred Eee--cCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcc------eEEEeecccCceEEEEecCCCEEEEEECCCc
Q 001039 1041 VLA--CHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGI------KCVKNVTIHSSAILSINAGDHWLGIGAADNS 1112 (1179)
Q Consensus 1041 ~~~--~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~------~~~~~~~~h~~~i~sis~dg~~lasgs~Dg~ 1112 (1179)
.+- +.. ...++.|.|+|.+.++ .||.|+-++-.+.+.. ..+..-....-..+.+.|+|.+-++. |+.
T Consensus 81 ~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ 155 (236)
T 1tl2_A 81 KIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQ 155 (236)
T ss_dssp EEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTE
T ss_pred Eecccccc-cceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCc
Confidence 111 111 1478899999988877 5699888876442211 11111111222445557899888877 777
Q ss_pred EEEEeCCCCCcCcccCCCCccccceeeee--cCCCcccEEEEEEcCCCCEEEEEeCCCcE
Q 001039 1113 MSLFHRPQERLGGFSGTGSKMSGWQLYRT--PQKTVAVVRCIASDLERKRICSGGRNGLL 1170 (1179)
Q Consensus 1113 I~iwd~~~~~~~~~~~~g~~~~~~~~~~~--~~~h~~~V~~v~fspdg~~Lasgs~Dg~I 1170 (1179)
++-+..+.. .+ ..|-...+ -......-+-+.|+++|.+.+.. +|.+
T Consensus 156 lyr~~~P~~-------~~---~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 156 FYKALPPVS-------NQ---DNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKF 203 (236)
T ss_dssp EEEECCCSS-------TT---CCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred EEecCCCCC-------CC---cccccccceeccCCcceEEEEEECCCCcEEEEe--CCeE
Confidence 654443321 11 11110011 11222345557899999877766 7643
No 352
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=83.99 E-value=61 Score=36.46 Aligned_cols=232 Identities=13% Similarity=0.109 Sum_probs=131.0
Q ss_pred cEEEEecCCCEEEEEeCCCcEEEEECCCC-----------eEEEEeec-CCCcEEEEEEe-CCCEEEEEEcCCeEEEEeC
Q 001039 885 TVRAINSDRGKVVSGSDDQSVLVWDKQTS-----------QLLEELKG-HDAQVSCVRML-SGERVLTASHDGTVKMWDV 951 (1179)
Q Consensus 885 ~v~~~s~d~~~l~sgs~dg~I~iwd~~t~-----------~~~~~~~~-h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~ 951 (1179)
.+..++......+.-..||.|..|-.... .....+.. ....+..++.+ .....+.-..||.|..|-.
T Consensus 54 ~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~ 133 (389)
T 3kci_A 54 RPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGE 133 (389)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEEC
T ss_pred ceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeC
Confidence 45566666777777888999999964321 11112221 22345555665 4556677788999999965
Q ss_pred CCC-----------eEEEEecc-CCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-c----------eeEEee-cCCC
Q 001039 952 RTD-----------TCVATVGR-CSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAG-R----------QMHKFL-GHTK 1007 (1179)
Q Consensus 952 ~~~-----------~~~~~~~~-~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~-~----------~~~~~~-~~~~ 1007 (1179)
... .....+.. ....|..++.. ....++...+|.|+.|-.... + ....+. ....
T Consensus 134 n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~ 211 (389)
T 3kci_A 134 AEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGH 211 (389)
T ss_dssp CGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTS
T ss_pred CCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCC
Confidence 321 11112222 12356666554 344556678899999975431 1 011111 1233
Q ss_pred CeEEEEEcC--CEEEEEeCCCcEEEEEccCC-----------eeeEEeec-CCcCEEEEEEecCCCEEEEEeCCCcEEEE
Q 001039 1008 WIRSIRMDR--DTVITGSDDWTARMWSISRG-----------TCDAVLAC-HAGPVQCVEYSSSDRGIITGSSDGLLRFW 1073 (1179)
Q Consensus 1008 ~I~sl~~~~--~~l~sgs~dg~I~iwd~~~~-----------~~~~~~~~-h~~~V~~l~~spdg~~l~sgs~Dg~I~iw 1073 (1179)
.|..++... ...++-..||.|+.|-.... .....+.. ....|..++.. ....++-..||.|+.|
T Consensus 212 ~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~alt~~G~v~~w 289 (389)
T 3kci_A 212 RVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG--SQFSVALTKSGAVYTW 289 (389)
T ss_dssp CEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE--TTEEEEEETTSCEEEE
T ss_pred eEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC--CCEEEEEeCCCeEEEE
Confidence 567777642 56777788999999964321 01111221 12246666554 3445555789999999
Q ss_pred EcCCCCcc--------eEEEeec-ccCceEEEEecCCCEEEEEECCCcEEEEeCCC
Q 001039 1074 ENDDAGGI--------KCVKNVT-IHSSAILSINAGDHWLGIGAADNSMSLFHRPQ 1120 (1179)
Q Consensus 1074 d~~~~~~~--------~~~~~~~-~h~~~i~sis~dg~~lasgs~Dg~I~iwd~~~ 1120 (1179)
-....+++ .....+. .....|..++......++-..||.|+.|-...
T Consensus 290 G~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 290 GKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTCCEEEEECCT
T ss_pred eCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEeccCeEEEECCCCCEEEeeCCC
Confidence 76432111 1111111 12345778877777777778999999997653
No 353
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=83.89 E-value=63 Score=36.58 Aligned_cols=264 Identities=13% Similarity=0.111 Sum_probs=145.7
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCc---------eeEEEecc-ccccEEEEecCCCEEEEEeCCC-cEEEEECCCC------
Q 001039 851 AGFFISGSTDCLVKIWDPSLRGS---------ELRATLKG-HTRTVRAINSDRGKVVSGSDDQ-SVLVWDKQTS------ 913 (1179)
Q Consensus 851 ~~~Lasgs~Dg~I~lWd~~~~~~---------~~~~~l~~-h~~~v~~~s~d~~~l~sgs~dg-~I~iwd~~t~------ 913 (1179)
+.+.+.-..||.|..|-....+. ..-..+.. ....|..++....+.++-..++ .|..|-....
T Consensus 25 ~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG~n~~GqLG~g 104 (406)
T 4d9s_A 25 ASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHG 104 (406)
T ss_dssp SSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEECCGGGTTCSS
T ss_pred CCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEEcCCCCcCCCCC
Confidence 44555566788888886432111 01111111 2235777777776766666664 9999954321
Q ss_pred ---eE--EEEeec-CCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCC-e----------EEEEecc-CCCcEEEEEEcCC
Q 001039 914 ---QL--LEELKG-HDAQVSCVRMLSGERVLTASHDGTVKMWDVRTD-T----------CVATVGR-CSSAVLCMEYDDS 975 (1179)
Q Consensus 914 ---~~--~~~~~~-h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~-~----------~~~~~~~-~~~~v~~l~~sp~ 975 (1179)
.. ...+.. ....|..++.. ....++-..||.|..|-.... + ....+.. ....|..++..
T Consensus 105 ~~~~~~~p~~v~~l~~~~i~~ia~G-~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G-- 181 (406)
T 4d9s_A 105 NSSDLFTPLPIKALHGIRIKQIACG-DSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAG-- 181 (406)
T ss_dssp SCCCEEEEEECGGGTTCCEEEEEEC-SSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--
T ss_pred CCCccccceEecccCCCCEEEEEEC-hhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCcEEEEecC--
Confidence 11 111111 22356666543 445566678999999975431 1 1111211 12356666554
Q ss_pred CCEEEEEeCCCeEEEEeCCCCc----------e-eEEee-cCCCCeEEEEEcCCEEEEEeCCCcEEEEEccCCe------
Q 001039 976 TGILAAGGRDAVANIWDIRAGR----------Q-MHKFL-GHTKWIRSIRMDRDTVITGSDDWTARMWSISRGT------ 1037 (1179)
Q Consensus 976 ~~~l~sgs~dg~I~iwD~~~~~----------~-~~~~~-~~~~~I~sl~~~~~~l~sgs~dg~I~iwd~~~~~------ 1037 (1179)
....++-..+|.|+.|-....- . ...+. .....|..++......++-..+|.|+.|-....-
T Consensus 182 ~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~v~~wG~n~~GqlG~g~ 261 (406)
T 4d9s_A 182 AEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGD 261 (406)
T ss_dssp SSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSS
T ss_pred CCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcEEEEcCCCCEEEeeCCCCCCCCCCC
Confidence 3445556788999999644211 0 11111 1224677788777777778899999999753311
Q ss_pred -----eeEEeec-CCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcc---------eEEEeecccCceEEEEecCCC
Q 001039 1038 -----CDAVLAC-HAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGI---------KCVKNVTIHSSAILSINAGDH 1102 (1179)
Q Consensus 1038 -----~~~~~~~-h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~---------~~~~~~~~h~~~i~sis~dg~ 1102 (1179)
....+.. ....|..++.. ..+.++-..||.|+.|-....+++ ............|..++....
T Consensus 262 ~~~~~~p~~v~~~~~~~v~~i~~G--~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~va~G~~ 339 (406)
T 4d9s_A 262 LEDHLIPHKLEALSNSFISQISGG--WRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWR 339 (406)
T ss_dssp CCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEEEEECSS
T ss_pred CcCccccEEecccCCCCEEEEEec--CCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEEEEeCCC
Confidence 0111111 12346555543 445556678999999976543211 111111123346778887777
Q ss_pred EEEEEECCCcEEEEeCC
Q 001039 1103 WLGIGAADNSMSLFHRP 1119 (1179)
Q Consensus 1103 ~lasgs~Dg~I~iwd~~ 1119 (1179)
..++-..||.|+.|=..
T Consensus 340 hs~alt~~G~v~~wG~n 356 (406)
T 4d9s_A 340 HTLAVTERNNVFAWGRG 356 (406)
T ss_dssp EEEEEETTSCEEEEECC
T ss_pred eEEEEeCCCCEEEecCC
Confidence 77778899999999764
No 354
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=80.25 E-value=66 Score=37.12 Aligned_cols=103 Identities=6% Similarity=-0.047 Sum_probs=60.6
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee--EEeec------CCCCeEEEEEcC-----CEEEEEeC------
Q 001039 964 SSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQM--HKFLG------HTKWIRSIRMDR-----DTVITGSD------ 1024 (1179)
Q Consensus 964 ~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~--~~~~~------~~~~I~sl~~~~-----~~l~sgs~------ 1024 (1179)
-...+.|+|.|+|+++++-...+.|++++..+++.. ..+.. .......+++++ ..|..+..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 346689999999997766544357998887655432 22221 235677899985 34443332
Q ss_pred -------CCcEEEEEccCC--e-----eeE-Eee-cCCcCEEEEEEecCCCEEEEEeC
Q 001039 1025 -------DWTARMWSISRG--T-----CDA-VLA-CHAGPVQCVEYSSSDRGIITGSS 1066 (1179)
Q Consensus 1025 -------dg~I~iwd~~~~--~-----~~~-~~~-~h~~~V~~l~~spdg~~l~sgs~ 1066 (1179)
...|.-|+...+ + .+. .+. ........++|.|||.+.++.+.
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 234555655432 1 111 122 12235789999999998777553
No 355
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=79.29 E-value=86 Score=35.07 Aligned_cols=172 Identities=15% Similarity=0.046 Sum_probs=88.0
Q ss_pred CCEEEEEeCCCcEEEEECCC-CeEEEEe--ecCCCcEEEEEEeC--CCEEEEEEcCC----eEEEEeCCCCeEEEEecc-
Q 001039 893 RGKVVSGSDDQSVLVWDKQT-SQLLEEL--KGHDAQVSCVRMLS--GERVLTASHDG----TVKMWDVRTDTCVATVGR- 962 (1179)
Q Consensus 893 ~~~l~sgs~dg~I~iwd~~t-~~~~~~~--~~h~~~V~~l~~s~--~~~l~sgs~dg----~I~iwd~~~~~~~~~~~~- 962 (1179)
...|++|+..| +.+++... ++.-... ......|.++++.+ .+.+.+++..| .|...+ ..++.-..+..
T Consensus 22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~ 99 (394)
T 3b7f_A 22 PVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRP 99 (394)
T ss_dssp CCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBC
T ss_pred CCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCcc
Confidence 34677777776 44444332 2211111 12345688998874 66677776665 444432 33332222211
Q ss_pred -------------CCCcEEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCceeEEeec-------------------CCCC
Q 001039 963 -------------CSSAVLCMEYDDS--TGILAAGGRDAVANIWDIRAGRQMHKFLG-------------------HTKW 1008 (1179)
Q Consensus 963 -------------~~~~v~~l~~sp~--~~~l~sgs~dg~I~iwD~~~~~~~~~~~~-------------------~~~~ 1008 (1179)
....|.+++++|. ...+.+++..+.|...+- .++.-..+.. ....
T Consensus 100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~ 178 (394)
T 3b7f_A 100 PAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPK 178 (394)
T ss_dssp CCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----CCCCE
T ss_pred ccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCCCCCc
Confidence 1125778999872 455666666666655432 2332222211 1235
Q ss_pred eEEEEEcC---CEEEEEeCCCcEEEEEccCCeeeEEeec-----C--------CcCEEEEEEecC-CCEEEEEeCCC
Q 001039 1009 IRSIRMDR---DTVITGSDDWTARMWSISRGTCDAVLAC-----H--------AGPVQCVEYSSS-DRGIITGSSDG 1068 (1179)
Q Consensus 1009 I~sl~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~-----h--------~~~V~~l~~spd-g~~l~sgs~Dg 1068 (1179)
+.++.+++ +.+..+..++.|...+ +.++.-..+.. + ...+.+++++|+ ...++.+...|
T Consensus 179 i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 179 MHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp EEEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred eeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence 77888864 4566665555444432 22332222211 0 134889999986 45677776555
No 356
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=78.92 E-value=93 Score=35.27 Aligned_cols=221 Identities=8% Similarity=0.009 Sum_probs=123.7
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCc------------eeEEEeccccccEEEEecCCCEEEEEeCCCcEEEEEC--C-CCeE
Q 001039 851 AGFFISGSTDCLVKIWDPSLRGS------------ELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDK--Q-TSQL 915 (1179)
Q Consensus 851 ~~~Lasgs~Dg~I~lWd~~~~~~------------~~~~~l~~h~~~v~~~s~d~~~l~sgs~dg~I~iwd~--~-t~~~ 915 (1179)
+.+.+.-..||.|+.|-.+..+. .+ ..+. -...|..++....+.++-..||.|..|-. . .++.
T Consensus 84 ~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P-~~v~-~~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~Gql 161 (423)
T 3mvd_K 84 GMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKP-DLID-LPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNM 161 (423)
T ss_dssp SSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSC-EECC-CSSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEE
T ss_pred CCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCC-eEEc-CCCCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCc
Confidence 45666667789999996432111 11 1111 23457778777788888889999999975 2 2221
Q ss_pred ---------EEEeecCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCC-----------------------eEEEEeccC
Q 001039 916 ---------LEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTD-----------------------TCVATVGRC 963 (1179)
Q Consensus 916 ---------~~~~~~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~-----------------------~~~~~~~~~ 963 (1179)
..........|..++.. ....++-..||.|..|-.... .+.......
T Consensus 162 G~~~~~~~~~p~~~~~~~~i~~va~G-~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~ 240 (423)
T 3mvd_K 162 GLTIDGNKRTPIDLMEGTVCCSIASG-ADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITR 240 (423)
T ss_dssp ESBTTBCEEEEEESSTTCCEEEEEEC-SSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTT
T ss_pred CcCCCCCCceeeEecCCCcEEEEecC-CCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecC
Confidence 11111123346666543 445566678999999964321 111111112
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-----------ceeEEeecCCCCeEEEEEcCCEEEEEeCCCcEEEEE
Q 001039 964 SSAVLCMEYDDSTGILAAGGRDAVANIWDIRAG-----------RQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWS 1032 (1179)
Q Consensus 964 ~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~-----------~~~~~~~~~~~~I~sl~~~~~~l~sgs~dg~I~iwd 1032 (1179)
...|..++.... ..++.-..+|.++.|-.... ............|..++......++-..||.|+.|=
T Consensus 241 ~~~v~~i~~g~~-~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G~~ht~alt~~G~v~~wG 319 (423)
T 3mvd_K 241 AKPFEAIWATNY-CTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQHHTVILTTDLKCSVVG 319 (423)
T ss_dssp CCCEEEEEEETT-EEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEECSSEEEEEETTCCEEEEE
T ss_pred CccEEEEEECCc-EEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEcccCeEEEEeCCCcEEEEE
Confidence 234555554422 22333357888888864421 111111122456788888777777888999999996
Q ss_pred ccCC------------eeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 001039 1033 ISRG------------TCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDD 1077 (1179)
Q Consensus 1033 ~~~~------------~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~ 1077 (1179)
.... .....+..-...|..++.. ....++-..||.|+.|=...
T Consensus 320 ~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G--~~hs~alt~~G~v~~wG~n~ 374 (423)
T 3mvd_K 320 RPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCG--EVCSYAVTIDGKLYSWGSGV 374 (423)
T ss_dssp CCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEE--TTEEEEEETTSCEEEEECCT
T ss_pred CCCCCCCCCCCccccccCceEeccCCCCEEEEEcC--CCeEEEEcCCCCEEEECCCC
Confidence 4321 1112222223367777665 33444557899999997665
No 357
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=72.85 E-value=1.8e+02 Score=35.61 Aligned_cols=172 Identities=8% Similarity=0.043 Sum_probs=86.9
Q ss_pred CCcEEEEcCCCCCceeEEEeccccccE--EE-EecCCC-----EEEEEeCC---CcEEEEECCC--CeEEEEeecCCCcE
Q 001039 860 DCLVKIWDPSLRGSELRATLKGHTRTV--RA-INSDRG-----KVVSGSDD---QSVLVWDKQT--SQLLEELKGHDAQV 926 (1179)
Q Consensus 860 Dg~I~lWd~~~~~~~~~~~l~~h~~~v--~~-~s~d~~-----~l~sgs~d---g~I~iwd~~t--~~~~~~~~~h~~~V 926 (1179)
...|+.|...+...+-...+.+....+ .. .+.+++ .+++.+.+ ..+.+.|... ++.. .+.......
T Consensus 215 ~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~ 293 (711)
T 4hvt_A 215 PNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQ-KINMPSDAT 293 (711)
T ss_dssp BCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEE-ECCSCTTCE
T ss_pred CCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcce-EeecCCcce
Confidence 357999987644334444454433333 22 355665 24444322 4456666553 4322 332222211
Q ss_pred EEEEEeCCCEEEEE----------EcCCeEEEEeCCCCe-------EEEE-e-ccCCCcEEEEEEcCCCCEEEEEeCCC-
Q 001039 927 SCVRMLSGERVLTA----------SHDGTVKMWDVRTDT-------CVAT-V-GRCSSAVLCMEYDDSTGILAAGGRDA- 986 (1179)
Q Consensus 927 ~~l~~s~~~~l~sg----------s~dg~I~iwd~~~~~-------~~~~-~-~~~~~~v~~l~~sp~~~~l~sgs~dg- 986 (1179)
-+....+..++.. ...+.|...|+.++. .... + ......+..+.+..+ .++++...++
T Consensus 294 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~ 371 (711)
T 4hvt_A 294 -LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNVV 371 (711)
T ss_dssp -EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETTE
T ss_pred -EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECCE
Confidence 1223344333321 246778899887631 1222 3 234456778888876 5666666676
Q ss_pred -eEEEEeCCCCc-eeEE-eecC-CCCeEEEEE--cCC-EEEEEeC---CCcEEEEEcc
Q 001039 987 -VANIWDIRAGR-QMHK-FLGH-TKWIRSIRM--DRD-TVITGSD---DWTARMWSIS 1034 (1179)
Q Consensus 987 -~I~iwD~~~~~-~~~~-~~~~-~~~I~sl~~--~~~-~l~sgs~---dg~I~iwd~~ 1034 (1179)
.+.++|+.+++ .... +... .+.+..... +++ .+++.+. -+.+..+|+.
T Consensus 372 ~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 372 AKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 46777776664 2333 2222 234554444 333 4444443 3567778776
No 358
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=71.47 E-value=1.3e+02 Score=33.46 Aligned_cols=135 Identities=10% Similarity=0.007 Sum_probs=68.0
Q ss_pred CCEEEEEEcCCeEEEEeCCC-CeEEEEe--ccCCCcEEEEEEcC-CCCEEEEEeCCC----eEEEEeCCCCceeEEeec-
Q 001039 934 GERVLTASHDGTVKMWDVRT-DTCVATV--GRCSSAVLCMEYDD-STGILAAGGRDA----VANIWDIRAGRQMHKFLG- 1004 (1179)
Q Consensus 934 ~~~l~sgs~dg~I~iwd~~~-~~~~~~~--~~~~~~v~~l~~sp-~~~~l~sgs~dg----~I~iwD~~~~~~~~~~~~- 1004 (1179)
...|++|+..| +.+++... ++.-... ......|.+++++| +...+.+++..| .|...+ ..++.-..+..
T Consensus 22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~ 99 (394)
T 3b7f_A 22 PVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRP 99 (394)
T ss_dssp CCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBC
T ss_pred CCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCcc
Confidence 45677888777 44444332 2222211 12346799999998 333444555454 444432 22332222211
Q ss_pred -------------CCCCeEEEEEc----CCEEEEEeCCCcEEEEEccCCeeeEEeec-------------------CCcC
Q 001039 1005 -------------HTKWIRSIRMD----RDTVITGSDDWTARMWSISRGTCDAVLAC-------------------HAGP 1048 (1179)
Q Consensus 1005 -------------~~~~I~sl~~~----~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-------------------h~~~ 1048 (1179)
....|.+++++ ++.+.+++..+.|...+ +.++.-..+.. ....
T Consensus 100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~ 178 (394)
T 3b7f_A 100 PAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPK 178 (394)
T ss_dssp CCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCE
T ss_pred ccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCc
Confidence 11247778885 56777776666655543 22332222211 1235
Q ss_pred EEEEEEecC-CCEEEEEeCCCcEE
Q 001039 1049 VQCVEYSSS-DRGIITGSSDGLLR 1071 (1179)
Q Consensus 1049 V~~l~~spd-g~~l~sgs~Dg~I~ 1071 (1179)
+.++.++|. ...++.+..++.|.
T Consensus 179 i~~i~~d~~~~~~l~vg~~~ggl~ 202 (394)
T 3b7f_A 179 MHSILVDPRDPKHLYIGMSSGGVF 202 (394)
T ss_dssp EEEEEECTTCTTCEEEEEETBEEE
T ss_pred eeEEEECCCCCCEEEEEECCCCEE
Confidence 788999873 34455554444333
No 359
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=70.85 E-value=1.3e+02 Score=33.17 Aligned_cols=230 Identities=11% Similarity=0.075 Sum_probs=116.6
Q ss_pred EEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEec----cccccEE--EEecC---
Q 001039 822 IIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLK----GHTRTVR--AINSD--- 892 (1179)
Q Consensus 822 ~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~----~h~~~v~--~~s~d--- 892 (1179)
++...-..-+.++|. |||+++++--..|.|++++........+..+. ....... +++|+
T Consensus 26 ~va~gL~~P~~ia~~------------pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~ 93 (347)
T 3das_A 26 TVATGLNSPWGLAPL------------PGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYAS 93 (347)
T ss_dssp EEECCCSSEEEEEEC------------TTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHH
T ss_pred EeecCCCCceEEEEc------------CCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEecccccc
Confidence 333333455788886 89998877766899999985422222222221 1222333 55664
Q ss_pred CCEEEEE---eCCCcEEEEECCCC----------eEEE-Eee-cCCCcEEEEEEe-CCCEEEEEEc-------------C
Q 001039 893 RGKVVSG---SDDQSVLVWDKQTS----------QLLE-ELK-GHDAQVSCVRML-SGERVLTASH-------------D 943 (1179)
Q Consensus 893 ~~~l~sg---s~dg~I~iwd~~t~----------~~~~-~~~-~h~~~V~~l~~s-~~~~l~sgs~-------------d 943 (1179)
+..|+.. ..++.|.-|....+ +.+. .+. .....-..+.|. ++.++++.+. .
T Consensus 94 ~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~ 173 (347)
T 3das_A 94 DHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLG 173 (347)
T ss_dssp HCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCST
T ss_pred CCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCC
Confidence 4555443 23456666665541 2221 222 111234567887 5555555432 3
Q ss_pred CeEEEEeCCCC---------eEEEEeccCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCc----------------
Q 001039 944 GTVKMWDVRTD---------TCVATVGRCSSAVLCMEYDDSTGILAAGG-RDAVANIWDIRAGR---------------- 997 (1179)
Q Consensus 944 g~I~iwd~~~~---------~~~~~~~~~~~~v~~l~~sp~~~~l~sgs-~dg~I~iwD~~~~~---------------- 997 (1179)
|.|.-.+.... ..+... ++. ....++|+|+|.+.++-. .++.=.+--+..+.
T Consensus 174 G~IlRi~~dG~ip~~nPf~~~~i~a~-G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~ 251 (347)
T 3das_A 174 GKILRMTPDGEPAPGNPFPGSPVYSY-GHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGF 251 (347)
T ss_dssp TCEEEECTTSSBCTTCSSTTCCEEEB-CCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTC
T ss_pred CEEEEEeCCCCccCCCCCCCCeEEee-CCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccc
Confidence 44554554321 111111 232 346789999877555432 22222222222221
Q ss_pred --eeEEeecCCCCeEEEEEc-CCEEEEEeCCCcEEEEEccCCee----eEEeecCCcCEEEEEEecCCCEEEEEe
Q 001039 998 --QMHKFLGHTKWIRSIRMD-RDTVITGSDDWTARMWSISRGTC----DAVLACHAGPVQCVEYSSSDRGIITGS 1065 (1179)
Q Consensus 998 --~~~~~~~~~~~I~sl~~~-~~~l~sgs~dg~I~iwd~~~~~~----~~~~~~h~~~V~~l~~spdg~~l~sgs 1065 (1179)
++..+..+......+++. ++.++..-..+.|....+..+.. ...+.+..+.+..++..|||.+.++.+
T Consensus 252 ~~P~~~~~~~~~ap~G~~~~~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 252 HDPVAQWSTDEASPSGIAYAEGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp CCCSEEECTTTCCEEEEEEETTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred cCCcEecCCCCCCCcceEEEcCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 122222222345566764 44555555566677667665432 223344457899999999997766554
No 360
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=68.81 E-value=1.5e+02 Score=33.11 Aligned_cols=169 Identities=9% Similarity=0.074 Sum_probs=98.6
Q ss_pred CeEEEEeCCCC--ceeEEeecC------CCCeEEEEEc---------CCEEE-EEeCCCcEEEEEccCCeeeEEeec---
Q 001039 986 AVANIWDIRAG--RQMHKFLGH------TKWIRSIRMD---------RDTVI-TGSDDWTARMWSISRGTCDAVLAC--- 1044 (1179)
Q Consensus 986 g~I~iwD~~~~--~~~~~~~~~------~~~I~sl~~~---------~~~l~-sgs~dg~I~iwd~~~~~~~~~~~~--- 1044 (1179)
-.|.+||++++ +.++++.-. ...+..+.++ ..++. +=+..+.|.++|+.+++..+....
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~ 202 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFK 202 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGS
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCc
Confidence 36888899888 888776432 3457778776 12333 333567899999999876655421
Q ss_pred -C--------------CcCEEEEEEecC----CCEEEEEeCCCcEEEEEcCC-----CC---cceEEEeecc--cCceEE
Q 001039 1045 -H--------------AGPVQCVEYSSS----DRGIITGSSDGLLRFWENDD-----AG---GIKCVKNVTI--HSSAIL 1095 (1179)
Q Consensus 1045 -h--------------~~~V~~l~~spd----g~~l~sgs~Dg~I~iwd~~~-----~~---~~~~~~~~~~--h~~~i~ 1095 (1179)
. ...+..++++|+ ++.|.-....+. ++|.+.+ .. ..+.+.. ++ ..+...
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L~~~~~~~~v~~~G~-kg~~s~~~~~ 280 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKELKQKGGKLNPELLGN-RGKYNDAIAL 280 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHHSSTTCCCCCEEEEE-CCTTCCEEEE
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHhhCcchhhceEEeee-cCCCCCcceE
Confidence 0 236888999998 777777665552 3444332 11 1222222 22 122234
Q ss_pred EEe-cCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEe
Q 001039 1096 SIN-AGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGG 1165 (1179)
Q Consensus 1096 sis-~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs 1165 (1179)
++. .+|.++++--..+.|..|+..+... .......+..-. .-..+.++.+..+|.+-+.++
T Consensus 281 ~~D~~~G~ly~~~~~~~aI~~w~~~~~~~--------~~~n~~~l~~d~-~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 281 AYDPKTKVIFFAEANTKQVSCWNTQKMPL--------RMKNTDVVYTSS-RFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp EECTTTCEEEEEESSSSEEEEEETTSCSB--------CGGGEEEEEECT-TCCSEEEEEECTTSCEEEEEC
T ss_pred EEeCCCCeEEEEeccCCeEEEEeCCCCcc--------ccCceEEEEECC-CccccCeEEECCCCeEEEEEC
Confidence 554 5677777777888999999863111 001112222222 334678888888887666553
No 361
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=66.34 E-value=1.9e+02 Score=33.30 Aligned_cols=232 Identities=11% Similarity=0.073 Sum_probs=129.6
Q ss_pred ccEEEEecCCCEEEEEeCCCcEEEEECCCC-e----------EE-----------------------EEeec-------C
Q 001039 884 RTVRAINSDRGKVVSGSDDQSVLVWDKQTS-Q----------LL-----------------------EELKG-------H 922 (1179)
Q Consensus 884 ~~v~~~s~d~~~l~sgs~dg~I~iwd~~t~-~----------~~-----------------------~~~~~-------h 922 (1179)
..|..++..+...++-..||.|..|-.... + .+ ..+.. .
T Consensus 67 ~~i~~va~G~~Ht~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~ 146 (473)
T 3of7_A 67 AKIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAE 146 (473)
T ss_dssp TCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHT
T ss_pred CCEEEEEeCCCeEEEEecCCeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccC
Confidence 467778777888888888999999954321 0 00 01111 1
Q ss_pred CCcEEEEEEeCCCEEEEEEcCCeEEEEeCC---CCeE------------EEEecc-CCCcEEEEEEcCCCCEEEEEeCCC
Q 001039 923 DAQVSCVRMLSGERVLTASHDGTVKMWDVR---TDTC------------VATVGR-CSSAVLCMEYDDSTGILAAGGRDA 986 (1179)
Q Consensus 923 ~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~---~~~~------------~~~~~~-~~~~v~~l~~sp~~~~l~sgs~dg 986 (1179)
...|..++.. ....++-..||.|..|-.. .++. ...+.. ....|..++.. ....++-..+|
T Consensus 147 ~~~i~~va~G-~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G--~~hs~alt~~G 223 (473)
T 3of7_A 147 GHKVVQLAAT-DNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPG--KDHILFLDEEG 223 (473)
T ss_dssp TCCEEEEEEC-SSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEEC--SSEEEEEETTS
T ss_pred CCcEEEEEcc-CCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEec--CCeEEEEeCCC
Confidence 2445555543 3445556788999999751 1110 111111 12246666654 34555667889
Q ss_pred eEEEEeCCCCceeE-------------EeecCCCCeEEEEEcCCEEEEEeCCCcEEEEEccCC------------eee--
Q 001039 987 VANIWDIRAGRQMH-------------KFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRG------------TCD-- 1039 (1179)
Q Consensus 987 ~I~iwD~~~~~~~~-------------~~~~~~~~I~sl~~~~~~l~sgs~dg~I~iwd~~~~------------~~~-- 1039 (1179)
.|+.|-....-.+. ........|..++......++-..+|.|+.|-.... ...
T Consensus 224 ~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~ 303 (473)
T 3of7_A 224 MVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTK 303 (473)
T ss_dssp CEEEEECCTTSTTSSCCCGGGTTTTCSCEECSCCSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEE
T ss_pred eEEEEeCCCCCCCCCCccccccccccCceecCCcceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeec
Confidence 99999654321110 000111467788887777788888999999965321 111
Q ss_pred -EEeec-CCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcce-------------------EE-Eeec-ccCceEEE
Q 001039 1040 -AVLAC-HAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIK-------------------CV-KNVT-IHSSAILS 1096 (1179)
Q Consensus 1040 -~~~~~-h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~-------------------~~-~~~~-~h~~~i~s 1096 (1179)
..+.. ....|..++.. ...-+.-..||.|+.|-....+++- .. .... .....|..
T Consensus 304 P~~v~~~~~~~i~~ia~G--~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~v~~ 381 (473)
T 3of7_A 304 PKRLALPDNVVIRSIAAG--EHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFKS 381 (473)
T ss_dssp EEECCCCTTCCEEEEEEC--SSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSCCEEE
T ss_pred cccccccCCccEEEEEeC--CCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCCCceEE
Confidence 11111 12346666543 3444555688999999765422110 01 1111 11126778
Q ss_pred EecCCCEEEEEECCCcEEEEeCCC
Q 001039 1097 INAGDHWLGIGAADNSMSLFHRPQ 1120 (1179)
Q Consensus 1097 is~dg~~lasgs~Dg~I~iwd~~~ 1120 (1179)
++......++-..||.|+.|-...
T Consensus 382 Ia~G~~hs~al~~~G~vy~wG~n~ 405 (473)
T 3of7_A 382 VAAGSHHSVAVAQNGIAYSWGFGE 405 (473)
T ss_dssp EEECSSEEEEEETTSCEEEEECCT
T ss_pred EEeCCCeEEEEeCCCcEEEeeCCC
Confidence 887777777778999999997653
No 362
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=65.97 E-value=1.5e+02 Score=32.05 Aligned_cols=230 Identities=12% Similarity=0.063 Sum_probs=126.1
Q ss_pred CCCEEEEEEcCCeEEEEeCCCCe-------EEEEec-cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC---C-----
Q 001039 933 SGERVLTASHDGTVKMWDVRTDT-------CVATVG-RCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRA---G----- 996 (1179)
Q Consensus 933 ~~~~l~sgs~dg~I~iwd~~~~~-------~~~~~~-~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~---~----- 996 (1179)
+...+++.+.+|.|+--....-+ -+..+. ...+.+..+........++..+..|.++-+.... .
T Consensus 7 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~ 86 (312)
T 1suu_A 7 KENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASK 86 (312)
T ss_dssp -CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC------
T ss_pred CCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCC
Confidence 45568889999999887654321 111111 1234455555555566778888899877765432 1
Q ss_pred -cee---EEeecCCCCeEEEE-E----cCCEEEEEeCCCcEEEEEccC-------CeeeEEeecCCcCEEEEEEecCCCE
Q 001039 997 -RQM---HKFLGHTKWIRSIR-M----DRDTVITGSDDWTARMWSISR-------GTCDAVLACHAGPVQCVEYSSSDRG 1060 (1179)
Q Consensus 997 -~~~---~~~~~~~~~I~sl~-~----~~~~l~sgs~dg~I~iwd~~~-------~~~~~~~~~h~~~V~~l~~spdg~~ 1060 (1179)
..+ ..+.. ...|.++. . ..+.++..+.+|.++...+.. |.....+.. .+.+..+....++..
T Consensus 87 G~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~~ 164 (312)
T 1suu_A 87 GQNISELINLGD-QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDEK 164 (312)
T ss_dssp -CBGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTCE
T ss_pred CcChhhccCCCC-CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCCE
Confidence 110 11222 23344443 3 245788999999999888743 222222332 456666666666678
Q ss_pred EEEEeCCCcEEEEEcCCC----C--cceEEEeecccCceEEEEe--cCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCc
Q 001039 1061 IITGSSDGLLRFWENDDA----G--GIKCVKNVTIHSSAILSIN--AGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSK 1132 (1179)
Q Consensus 1061 l~sgs~Dg~I~iwd~~~~----~--~~~~~~~~~~h~~~i~sis--~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~ 1132 (1179)
++..+.+|.+..+....- . .......+.. ...+.++. .++..+++.+..|.....++..-........|.
T Consensus 165 i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~~~R~~kGv- 242 (312)
T 1suu_A 165 VICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATGY- 242 (312)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBCCTTCCCE-
T ss_pred EEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEEHHHhcccCCCCCCE-
Confidence 888999999988887541 1 1112222222 33444442 356678888999999999886543322222331
Q ss_pred cccceeeeecCCCcccEEE-EEEcCCCCEEEEEeCCCcEE
Q 001039 1133 MSGWQLYRTPQKTVAVVRC-IASDLERKRICSGGRNGLLR 1171 (1179)
Q Consensus 1133 ~~~~~~~~~~~~h~~~V~~-v~fspdg~~Lasgs~Dg~I~ 1171 (1179)
..........+.+.+ ..+.. ..-+...+..|.+.
T Consensus 243 ----~~~~~~k~~~~~lv~~~~~~~-~~~l~~~t~~g~~~ 277 (312)
T 1suu_A 243 ----TSYKKSDKKAGSVVDAIAVSE-DDEILLVSKRSKAL 277 (312)
T ss_dssp ----ECSCTTCTTTCSEEEEEEECT-TCEEEEEETTCEEE
T ss_pred ----EeeEccCCCCCeEEEEEEeCC-CCEEEEEeCCCeEE
Confidence 222222122334433 34544 44455555666443
No 363
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=65.17 E-value=12 Score=33.23 Aligned_cols=50 Identities=22% Similarity=0.295 Sum_probs=36.9
Q ss_pred HHHHHHHhhhhccCChHHHHHHHHHHHHHHhhhcCCchhHH-HHHHhhhHHHHHH
Q 001039 624 ELLKTAIGRATSRNDVSTIRDALEVSAEMFKKDANNVSDYV-QRHLISLSIWEEL 677 (1179)
Q Consensus 624 ~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~y~-q~~l~~~p~~~~~ 677 (1179)
.+|..||+-|...+|+.+..+.||....=|-.. .+++.|+ |+- +|+.+.|
T Consensus 46 ~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~-~~iY~~~lqEl---kPtl~EL 96 (109)
T 1v54_E 46 KIIDAALRACRRLNDFASAVRILEVVKDKAGPH-KEIYPYVIQEL---RPTLNEL 96 (109)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC-TTHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc-hhhHHHHHHHH---hhHHHHh
Confidence 578999999999999999999998555444332 5567775 432 4887765
No 364
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=64.80 E-value=1.6e+02 Score=31.88 Aligned_cols=184 Identities=14% Similarity=0.151 Sum_probs=108.7
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCeE-------E--EEeecCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCC---CC----
Q 001039 891 SDRGKVVSGSDDQSVLVWDKQTSQL-------L--EELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVR---TD---- 954 (1179)
Q Consensus 891 ~d~~~l~sgs~dg~I~iwd~~t~~~-------~--~~~~~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~---~~---- 954 (1179)
++...+++.+.+|.|+--....-+. + ..++..+.-+.....+..+.++..+..|.++-.... ..
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~ 85 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS 85 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Confidence 4667788999999999876543211 1 122333333333333467788888899987766543 21
Q ss_pred --eEE---EEeccCCCcEEEEEEcC---CCCEEEEEeCCCeEEEEeCCC-------CceeEEeecCCCCeEEEEE-c-CC
Q 001039 955 --TCV---ATVGRCSSAVLCMEYDD---STGILAAGGRDAVANIWDIRA-------GRQMHKFLGHTKWIRSIRM-D-RD 1017 (1179)
Q Consensus 955 --~~~---~~~~~~~~~v~~l~~sp---~~~~l~sgs~dg~I~iwD~~~-------~~~~~~~~~~~~~I~sl~~-~-~~ 1017 (1179)
..+ ..+. ....|.++...+ ++..++..+.+|.++...+.. |.....+.. ...+..+.. + .+
T Consensus 86 ~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~ 163 (312)
T 1suu_A 86 KGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDE 163 (312)
T ss_dssp --CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTC
T ss_pred CCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCC
Confidence 110 0111 233455554333 466788889999999888743 222223333 344444444 3 45
Q ss_pred EEEEEeCCCcEEEEEccC---------CeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 001039 1018 TVITGSDDWTARMWSISR---------GTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDD 1077 (1179)
Q Consensus 1018 ~l~sgs~dg~I~iwd~~~---------~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~ 1077 (1179)
.++..+.+|.+..++... |.....+. ....|.++....++..+++.+..|..+..++..
T Consensus 164 ~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 164 KVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred EEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 788899999998888753 11122222 244566666656677788899999999888754
No 365
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=64.43 E-value=1.7e+02 Score=32.18 Aligned_cols=237 Identities=11% Similarity=-0.005 Sum_probs=115.7
Q ss_pred EEeecCCCcEEEEEEeCCCEEEEEEc-CCeEEEEeCCCCeEE--EEe----ccCCCcEEEEEEcCC---CCEEEEE-e--
Q 001039 917 EELKGHDAQVSCVRMLSGERVLTASH-DGTVKMWDVRTDTCV--ATV----GRCSSAVLCMEYDDS---TGILAAG-G-- 983 (1179)
Q Consensus 917 ~~~~~h~~~V~~l~~s~~~~l~sgs~-dg~I~iwd~~~~~~~--~~~----~~~~~~v~~l~~sp~---~~~l~sg-s-- 983 (1179)
..+...-...+.++|.++..++++.. .|.|++++..+++.. ..+ .........++++|+ +..|.+. +
T Consensus 25 ~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~ 104 (347)
T 3das_A 25 RTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA 104 (347)
T ss_dssp EEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS
T ss_pred EEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecC
Confidence 34444445678999985444555555 899999987666542 222 123456899999995 4445443 2
Q ss_pred CCCeEEEEeCCCC----------ceeE-Eee-cCCCCeEEEEEcCC--EEEEEeC-------------CCcEEEEEccCC
Q 001039 984 RDAVANIWDIRAG----------RQMH-KFL-GHTKWIRSIRMDRD--TVITGSD-------------DWTARMWSISRG 1036 (1179)
Q Consensus 984 ~dg~I~iwD~~~~----------~~~~-~~~-~~~~~I~sl~~~~~--~l~sgs~-------------dg~I~iwd~~~~ 1036 (1179)
.++.|.-|....+ +.+. .+. ........+.|+++ +.++.+. .|.|.-.+....
T Consensus 105 ~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ 184 (347)
T 3das_A 105 SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE 184 (347)
T ss_dssp SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS
T ss_pred CCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCC
Confidence 3456666665541 1111 121 11123345777543 4444332 344544454321
Q ss_pred e-------eeEEe-ecCCcCEEEEEEecCCCEEEEEe-CCCcEEEEEcCCCCc---------------ceEEEeecccCc
Q 001039 1037 T-------CDAVL-ACHAGPVQCVEYSSSDRGIITGS-SDGLLRFWENDDAGG---------------IKCVKNVTIHSS 1092 (1179)
Q Consensus 1037 ~-------~~~~~-~~h~~~V~~l~~spdg~~l~sgs-~Dg~I~iwd~~~~~~---------------~~~~~~~~~h~~ 1092 (1179)
- ....+ .+|. ....++|+|+|.+.++=. .|+.=.|--+..+.. ...+..+..+..
T Consensus 185 ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ 263 (347)
T 3das_A 185 PAPGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEA 263 (347)
T ss_dssp BCTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTC
T ss_pred ccCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCC
Confidence 0 01112 2343 346899999877655432 233222222222211 011112211111
Q ss_pred eEEEEe-cCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEe
Q 001039 1093 AILSIN-AGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGG 1165 (1179)
Q Consensus 1093 ~i~sis-~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs 1165 (1179)
....+. .+|..+...-..+.|....+.... ... +....+.+..+.+.+|+..|||.+.++.+
T Consensus 264 ap~G~~~~~g~~~~~~l~~~~l~~v~~~~~~---------~~~--~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 264 SPSGIAYAEGSVWMAGLRGERLWRIPLKGTA---------AAA--DPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp CEEEEEEETTEEEEEESTTCSEEEEEEETTE---------ESS--CCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred CCcceEEEcCceeeccccCCEEEEEEecCCc---------eec--ceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 222222 245555554455555555543211 000 11112334457899999999998777654
No 366
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=63.35 E-value=2.1e+02 Score=32.85 Aligned_cols=149 Identities=15% Similarity=0.127 Sum_probs=86.7
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEeCC---CCc---------e---eEEeec-CCCCeEEEEEcCCEEEEEeCCCcE
Q 001039 965 SAVLCMEYDDSTGILAAGGRDAVANIWDIR---AGR---------Q---MHKFLG-HTKWIRSIRMDRDTVITGSDDWTA 1028 (1179)
Q Consensus 965 ~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~---~~~---------~---~~~~~~-~~~~I~sl~~~~~~l~sgs~dg~I 1028 (1179)
..|..++.. ....++-..+|.|+.|-.. .++ . ...+.. ....|..++......++-..+|.|
T Consensus 148 ~~i~~va~G--~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v 225 (473)
T 3of7_A 148 HKVVQLAAT--DNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMV 225 (473)
T ss_dssp CCEEEEEEC--SSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCE
T ss_pred CcEEEEEcc--CCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeE
Confidence 456665554 3344555678888888751 111 0 111111 123588888888888888899999
Q ss_pred EEEEccCCee---------------eEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcce---------E-
Q 001039 1029 RMWSISRGTC---------------DAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIK---------C- 1083 (1179)
Q Consensus 1029 ~iwd~~~~~~---------------~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~---------~- 1083 (1179)
+.|-....-. ...+ ....|..++.. ....++-..+|.|+.|-....++.- .
T Consensus 226 ~~wG~n~~GqLG~~~~~~~~~~~~~p~~~--~~~~v~~Ia~G--~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~ 301 (473)
T 3of7_A 226 FAWGNGQQNQLGRKVMERFRLKTLDPRPF--GLRHVKYIASG--ENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALV 301 (473)
T ss_dssp EEEECCTTSTTSSCCCGGGTTTTCSCEEC--SCCSEEEEEEC--SSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEE
T ss_pred EEEeCCCCCCCCCCccccccccccCceec--CCcceEEEecC--CCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCcee
Confidence 9996543110 0011 11346665543 4455666789999999765422110 1
Q ss_pred --EEeec-ccCceEEEEecCCCEEEEEECCCcEEEEeCC
Q 001039 1084 --VKNVT-IHSSAILSINAGDHWLGIGAADNSMSLFHRP 1119 (1179)
Q Consensus 1084 --~~~~~-~h~~~i~sis~dg~~lasgs~Dg~I~iwd~~ 1119 (1179)
-..+. .....|..++......++-..||.|+.|-..
T Consensus 302 ~~P~~v~~~~~~~i~~ia~G~~hs~~lt~~G~v~~wG~n 340 (473)
T 3of7_A 302 TKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRL 340 (473)
T ss_dssp EEEEECCCCTTCCEEEEEECSSEEEEEETTSCEEEEEEC
T ss_pred eccccccccCCccEEEEEeCCCeEEEEeCCCeEEEEECC
Confidence 11111 1224677887777777777899999999754
No 367
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=59.11 E-value=2.8e+02 Score=32.77 Aligned_cols=231 Identities=15% Similarity=0.089 Sum_probs=128.9
Q ss_pred cCCCEEEEEe-CCCcEEEEECCCCeEEEEeec-CCCcEEEEEEe---CCCEEEEEEc-------CCeE------------
Q 001039 891 SDRGKVVSGS-DDQSVLVWDKQTSQLLEELKG-HDAQVSCVRML---SGERVLTASH-------DGTV------------ 946 (1179)
Q Consensus 891 ~d~~~l~sgs-~dg~I~iwd~~t~~~~~~~~~-h~~~V~~l~~s---~~~~l~sgs~-------dg~I------------ 946 (1179)
.||++++.-. .+..|-..+++..++-+.+.. ....+.++.+- +..++++++. ||..
T Consensus 140 yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f 219 (638)
T 3sbq_A 140 YDGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMY 219 (638)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEE
T ss_pred eeeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEE
Confidence 5778888876 467788889998888766653 34567777765 4556666654 2221
Q ss_pred EEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCC---------------eEEEEeCCC-------Cc-------
Q 001039 947 KMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDA---------------VANIWDIRA-------GR------- 997 (1179)
Q Consensus 947 ~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg---------------~I~iwD~~~-------~~------- 997 (1179)
...|..+.+....+.- .+....+..+++|++.++.+.+. .+.++|+.. |+
T Consensus 220 ~~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~ 298 (638)
T 3sbq_A 220 NAIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDS 298 (638)
T ss_dssp EEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTC
T ss_pred EEEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCC
Confidence 1123333333322211 22333455677788877765421 255555421 10
Q ss_pred eeEEeecCC---------------CCeEEEEE--cCCE-EEEEeCCCcEEEEEccCC------ee-------eEEeecCC
Q 001039 998 QMHKFLGHT---------------KWIRSIRM--DRDT-VITGSDDWTARMWSISRG------TC-------DAVLACHA 1046 (1179)
Q Consensus 998 ~~~~~~~~~---------------~~I~sl~~--~~~~-l~sgs~dg~I~iwd~~~~------~~-------~~~~~~h~ 1046 (1179)
-+..+.+.. .....+.. ++.+ +++|-.+.++.++|+++- +. ..... -.
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~G 377 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LG 377 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CC
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CC
Confidence 111222211 11222333 3444 455557889999998742 11 22222 23
Q ss_pred cCEEEEEEecCCCEEEEEeCCCcEEEEEcCCC------C-cceEEEeecccCceEEE-E------ecCCCEEEEEEC---
Q 001039 1047 GPVQCVEYSSSDRGIITGSSDGLLRFWENDDA------G-GIKCVKNVTIHSSAILS-I------NAGDHWLGIGAA--- 1109 (1179)
Q Consensus 1047 ~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~------~-~~~~~~~~~~h~~~i~s-i------s~dg~~lasgs~--- 1109 (1179)
-.....+|+++|.-..+-.-|..|.-|++... + ....+..+..|-.+--- . .++|++|++...
T Consensus 378 lGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~sk 457 (638)
T 3sbq_A 378 LGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSK 457 (638)
T ss_dssp SCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCT
T ss_pred CcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEeccccc
Confidence 45678899999955556668999999998752 1 11345555555444322 1 478999998753
Q ss_pred CCc----------EEEEeCCCCCc
Q 001039 1110 DNS----------MSLFHRPQERL 1123 (1179)
Q Consensus 1110 Dg~----------I~iwd~~~~~~ 1123 (1179)
|.. -.+.|+...++
T Consensus 458 drfl~vGpl~pen~QlidIsGdkM 481 (638)
T 3sbq_A 458 DRFLPVGPLHPENDQLIDISGDEM 481 (638)
T ss_dssp TSSCCCSSSCCEEEEEEECSSSSC
T ss_pred ccCcCCCCCCCCcceeEecCCCce
Confidence 433 36777765544
No 368
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=57.61 E-value=2.2e+02 Score=31.03 Aligned_cols=235 Identities=9% Similarity=0.060 Sum_probs=124.5
Q ss_pred CCCEEEEEEcCCeEEEEeCCCC----eEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeC---CC------Ccee
Q 001039 933 SGERVLTASHDGTVKMWDVRTD----TCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDI---RA------GRQM 999 (1179)
Q Consensus 933 ~~~~l~sgs~dg~I~iwd~~~~----~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~---~~------~~~~ 999 (1179)
+...+++.+.+|.|+--....- .....++ ..+.+..+........++..+..|.++-+.. .. |.++
T Consensus 4 ~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i 82 (323)
T 1wp5_A 4 SEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMK-DTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHI 82 (323)
T ss_dssp CCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCC-TTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEG
T ss_pred CCcEEEEEeCCCEEEEeEHHHhhhcCccccccC-CCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcCh
Confidence 3456788889998887654311 1111122 2344555555555667777788898766554 22 2221
Q ss_pred EEe-e-cCCCCeEEE-EEc----CCEEEEEeCCCcEEEEEccC--------CeeeEEeecCCcCEEEEEEecCCCEEEEE
Q 001039 1000 HKF-L-GHTKWIRSI-RMD----RDTVITGSDDWTARMWSISR--------GTCDAVLACHAGPVQCVEYSSSDRGIITG 1064 (1179)
Q Consensus 1000 ~~~-~-~~~~~I~sl-~~~----~~~l~sgs~dg~I~iwd~~~--------~~~~~~~~~h~~~V~~l~~spdg~~l~sg 1064 (1179)
..+ . .....|.++ ..+ +.+++.++.+|.++-..+.. |.....+.. .+.+..+........++..
T Consensus 83 ~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~~~~~~i~l~ 161 (323)
T 1wp5_A 83 ANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLTDGMNELFLV 161 (323)
T ss_dssp GGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEECSCSEEEEE
T ss_pred hhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEeCCCCEEEEE
Confidence 111 1 122345544 333 34799999999999988742 221112222 3556666555566778888
Q ss_pred eCCCcEEEEEcCCCC------cceEEEeecccCceEEEE--ecCCC-EEEEEECCCcEEEEeCCCCCcCcccCCCCcccc
Q 001039 1065 SSDGLLRFWENDDAG------GIKCVKNVTIHSSAILSI--NAGDH-WLGIGAADNSMSLFHRPQERLGGFSGTGSKMSG 1135 (1179)
Q Consensus 1065 s~Dg~I~iwd~~~~~------~~~~~~~~~~h~~~i~si--s~dg~-~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~ 1135 (1179)
+.+|.+..++...-. .......+. ....|.++ -.++. .+.+.+..|..+..++..-........|
T Consensus 162 T~~G~~irf~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kG----- 235 (323)
T 1wp5_A 162 THNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRG----- 235 (323)
T ss_dssp ETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCC-----
T ss_pred eCCCcEEEEEHHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCC-----
Confidence 999998888765411 111111121 22334443 23344 7888889999888887643222222222
Q ss_pred ceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001039 1136 WQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEA 1175 (1179)
Q Consensus 1136 ~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv 1175 (1179)
.............+.++....++..++..+.+|.+...++
T Consensus 236 v~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~ 275 (323)
T 1wp5_A 236 VVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKV 275 (323)
T ss_dssp EECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEG
T ss_pred EECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEh
Confidence 1222223222324543333233445666677777655554
No 369
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=54.11 E-value=2.4e+02 Score=30.59 Aligned_cols=229 Identities=9% Similarity=0.092 Sum_probs=125.6
Q ss_pred cCCCEEEEEeCCCcEEEEECCC----CeEEEEeecCCCcEEEEEEeCCCEEEEEEcCCeEEEEeC---CC------CeEE
Q 001039 891 SDRGKVVSGSDDQSVLVWDKQT----SQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDV---RT------DTCV 957 (1179)
Q Consensus 891 ~d~~~l~sgs~dg~I~iwd~~t----~~~~~~~~~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~---~~------~~~~ 957 (1179)
++...+++.+.+|.|+--...+ +.....++..+.-+..+..+..+.++..+..|.+.-+.. .. |..+
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i 82 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHI 82 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEG
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcCh
Confidence 4566788889999998765431 111112333333333333446778888888898665543 22 2221
Q ss_pred EEe-c-cCCCcEEEEE-EcC--CCCEEEEEeCCCeEEEEeCCC--------CceeEEeecCCCCeEEEEE-c-CCEEEEE
Q 001039 958 ATV-G-RCSSAVLCME-YDD--STGILAAGGRDAVANIWDIRA--------GRQMHKFLGHTKWIRSIRM-D-RDTVITG 1022 (1179)
Q Consensus 958 ~~~-~-~~~~~v~~l~-~sp--~~~~l~sgs~dg~I~iwD~~~--------~~~~~~~~~~~~~I~sl~~-~-~~~l~sg 1022 (1179)
..+ . .....|.++. ... ++.+++.++.+|.++...+.. |.....+... +.+..+.. + .+.++..
T Consensus 83 ~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~~~i~l~ 161 (323)
T 1wp5_A 83 ANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGMNELFLV 161 (323)
T ss_dssp GGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSCSEEEEE
T ss_pred hhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCCCCEEEEE
Confidence 111 1 1233455543 332 256788999999999987742 2222223333 34444333 3 4578888
Q ss_pred eCCCcEEEEEccCC-------eeeEEeec-CCcCEEEEEEecCCC-EEEEEeCCCcEEEEEcCCC-------CcceEEEe
Q 001039 1023 SDDWTARMWSISRG-------TCDAVLAC-HAGPVQCVEYSSSDR-GIITGSSDGLLRFWENDDA-------GGIKCVKN 1086 (1179)
Q Consensus 1023 s~dg~I~iwd~~~~-------~~~~~~~~-h~~~V~~l~~spdg~-~l~sgs~Dg~I~iwd~~~~-------~~~~~~~~ 1086 (1179)
+.+|.+..++...- +-+..+.- ....|.++...+++. .+++.+..|..+..++..- .....++.
T Consensus 162 T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~~ 241 (323)
T 1wp5_A 162 THNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRE 241 (323)
T ss_dssp ETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCC
T ss_pred eCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECeee
Confidence 99999888876431 11121221 234566665555555 7888889998888776541 11112222
Q ss_pred ecccCceEEEE--ecCCCEEEEEECCCcEEEEeCCC
Q 001039 1087 VTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQ 1120 (1179)
Q Consensus 1087 ~~~h~~~i~si--s~dg~~lasgs~Dg~I~iwd~~~ 1120 (1179)
+......+.++ ..++..++..+.+|.+...++..
T Consensus 242 ~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 242 LKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp CSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred cCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence 22222234332 23345566777788877777764
No 370
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=53.59 E-value=2.4e+02 Score=30.35 Aligned_cols=232 Identities=12% Similarity=0.049 Sum_probs=122.7
Q ss_pred CCEEEEEEcCCeEEEEeCCCCeEEE---------EeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeC---CC------
Q 001039 934 GERVLTASHDGTVKMWDVRTDTCVA---------TVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDI---RA------ 995 (1179)
Q Consensus 934 ~~~l~sgs~dg~I~iwd~~~~~~~~---------~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~---~~------ 995 (1179)
...+++.+.+|.|+--.+.+-+... .++ ..+.+..+........++..+..|.++-+.. ..
T Consensus 3 e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~k-e~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~ 81 (307)
T 1zi0_A 3 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIK-EEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGAR 81 (307)
T ss_dssp CEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSC
T ss_pred CcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeC-CCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCC
Confidence 3467888999999877765432211 111 2344545555555667777788888666544 22
Q ss_pred CceeE---EeecCCCCeEEEEE----c-CCEEEEEeCCCcEEEEEccC-------CeeeEEeecCCcCEEEEEEecCCCE
Q 001039 996 GRQMH---KFLGHTKWIRSIRM----D-RDTVITGSDDWTARMWSISR-------GTCDAVLACHAGPVQCVEYSSSDRG 1060 (1179)
Q Consensus 996 ~~~~~---~~~~~~~~I~sl~~----~-~~~l~sgs~dg~I~iwd~~~-------~~~~~~~~~h~~~V~~l~~spdg~~ 1060 (1179)
|.++. .+ .....|.++.. + ...++..+.+|.++-..+.. |.....+..+ +.+..+....+...
T Consensus 82 G~~i~~~l~l-~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~ 159 (307)
T 1zi0_A 82 GRPIVNLLPL-EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDE 159 (307)
T ss_dssp CEEGGGTSCC-CTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCE
T ss_pred CeEhhhccCC-CCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCE
Confidence 22211 12 22334555543 2 34799999999999987642 2111223333 55666655556667
Q ss_pred EEEEeCCCcEEEEEcCCCC------cceEEEeecccCceEEEEe--cCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCc
Q 001039 1061 IITGSSDGLLRFWENDDAG------GIKCVKNVTIHSSAILSIN--AGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSK 1132 (1179)
Q Consensus 1061 l~sgs~Dg~I~iwd~~~~~------~~~~~~~~~~h~~~i~sis--~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~ 1132 (1179)
++..+.+|.+..++...-. .......+. ....+.++. .++..+++.+..|.++-.++..-........|
T Consensus 160 i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG-- 236 (307)
T 1zi0_A 160 VMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKG-- 236 (307)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCC--
T ss_pred EEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCC--
Confidence 8888899998888765411 011111222 233455552 34567888899999998887543221111112
Q ss_pred cccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001039 1133 MSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEA 1175 (1179)
Q Consensus 1133 ~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv 1175 (1179)
..... +....+.+-.+....+..-++..+.+|.+.-.++
T Consensus 237 ---~~~~~-~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~ 275 (307)
T 1zi0_A 237 ---VISIK-VTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRV 275 (307)
T ss_dssp ---EESSC-CCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEG
T ss_pred ---EEeeE-ecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEec
Confidence 11111 2222244444444334455556667776655544
No 371
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=53.48 E-value=2.8e+02 Score=31.07 Aligned_cols=239 Identities=13% Similarity=0.079 Sum_probs=129.0
Q ss_pred CcEEEEEEeCCCEEEEEEcCCeEEEEeCCCC-e------------EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 001039 924 AQVSCVRMLSGERVLTASHDGTVKMWDVRTD-T------------CVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANI 990 (1179)
Q Consensus 924 ~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~-~------------~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~i 990 (1179)
..|..++.. ....+.-..||.|..|-.... + ....+ .....|..++.. ....++-+.||.|+.
T Consensus 59 ~~i~~va~G-~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v-~l~~~i~~va~G--~~hs~alt~~G~v~~ 134 (413)
T 1a12_A 59 EDVVQAEAG-GMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKV-ELQEKVVQVSAG--DSHTAALTDDGRVFL 134 (413)
T ss_dssp SCEEEEEEC-SSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEEC-CCCSCEEEEEEC--SSEEEEEETTSCEEE
T ss_pred CCeEEEEeC-CCeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEe-cCCCcEEEEecC--CCeEEEEcCCCcEEE
Confidence 456666543 345556678899999975431 1 00111 113356666553 334555677899999
Q ss_pred EeC--CC-Cce-----------eEEeecCCCCeEEEEEcCCEEEEEeCCCcEEEEEccCC-ee-----------------
Q 001039 991 WDI--RA-GRQ-----------MHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRG-TC----------------- 1038 (1179)
Q Consensus 991 wD~--~~-~~~-----------~~~~~~~~~~I~sl~~~~~~l~sgs~dg~I~iwd~~~~-~~----------------- 1038 (1179)
|-. .. ++. ...+ .....|..++......++-..||.|+.|=.... +.
T Consensus 135 wG~~~n~~GqlG~~~~~~~~~~P~~v-~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~ 213 (413)
T 1a12_A 135 WGSFRDNNGVIGLLEPMKKSMVPVQV-QLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLE 213 (413)
T ss_dssp EECEEETTEEEESSBBTBCEEEEEEE-CCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHH
T ss_pred eeCCcCCCCccCcCCccccccCCEEe-cCCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCcccccccccccccc
Confidence 975 21 110 1111 234567888887778888889999999965431 10
Q ss_pred ----eEEeec------CCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcc--------eEEEeecc---cCceEEEE
Q 001039 1039 ----DAVLAC------HAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGI--------KCVKNVTI---HSSAILSI 1097 (1179)
Q Consensus 1039 ----~~~~~~------h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~--------~~~~~~~~---h~~~i~si 1097 (1179)
...... ....|..++... .+.++-..||.|+.|-....+++ ..-..+.. ....|..+
T Consensus 214 ~~~~P~~v~~~~~g~~~~~~i~~ia~G~--~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~i 291 (413)
T 1a12_A 214 RLLVPKCVMLKSRGSRGHVRFQDAFCGA--YFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGF 291 (413)
T ss_dssp HHHSCEECCCBCSSCCSBCCEEEEEEET--TEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEE
T ss_pred ccccCceEeeccccccCCccEEEEEeCC--CEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEE
Confidence 001110 124566666543 34455568999999976543211 11111111 11347888
Q ss_pred ecCCCEEEEEECCCcEEEEeCCCC-CcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001039 1098 NAGDHWLGIGAADNSMSLFHRPQE-RLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEAT 1176 (1179)
Q Consensus 1098 s~dg~~lasgs~Dg~I~iwd~~~~-~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~ 1176 (1179)
+......++-..||.|+.|-.... ++. .|.............. -..|..|+...+ .-+.-..||.|+.|-..
T Consensus 292 a~G~~hs~al~~~G~v~~wG~n~~GqLG----~g~~~~~~~~P~~v~~-l~~v~~v~~G~~--hs~alt~~G~v~~wG~n 364 (413)
T 1a12_A 292 SGGQHHTVCMDSEGKAYSLGRAEYGRLG----LGEGAEEKSIPTLISR-LPAVSSVACGAS--VGYAVTKDGRVFAWGMG 364 (413)
T ss_dssp EECSSEEEEEETTSCEEEEECCGGGTTC----SCTTCCCEEEEEECCS-SSSEEEEEECSS--EEEEEETTSCEEEEECC
T ss_pred ecccceEEEEeCCCCEEEeeCCCCCccC----CCCCCccccCCEEecc-cCceeEEEECcc--eEEEEeCCCCEEEecCC
Confidence 877777777789999999976532 111 1110000011111111 125777765433 33445678899999654
No 372
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=49.48 E-value=1.5e+02 Score=34.08 Aligned_cols=30 Identities=7% Similarity=0.064 Sum_probs=23.4
Q ss_pred cCEEEEEEecCCC-EEEEEeCCCcEEEEEcC
Q 001039 1047 GPVQCVEYSSSDR-GIITGSSDGLLRFWEND 1076 (1179)
Q Consensus 1047 ~~V~~l~~spdg~-~l~sgs~Dg~I~iwd~~ 1076 (1179)
...+.|+|.|||. .++++...|.|++++.+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 4568999999996 45566788999999754
No 373
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=48.58 E-value=29 Score=32.43 Aligned_cols=50 Identities=22% Similarity=0.286 Sum_probs=36.7
Q ss_pred HHHHHHHhhhhccCChHHHHHHHHHHHHHHhhhcCCchhHH-HHHHhhhHHHHHH
Q 001039 624 ELLKTAIGRATSRNDVSTIRDALEVSAEMFKKDANNVSDYV-QRHLISLSIWEEL 677 (1179)
Q Consensus 624 ~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~y~-q~~l~~~p~~~~~ 677 (1179)
.+|..||+-|...+|+.+....||....=|-. ..+++.|+ |+ ++|+.++|
T Consensus 89 ~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~-~~~iY~y~lqE---lkPtl~EL 139 (152)
T 2y69_E 89 KIIDAALRACRRLNDFASAVRILEVVKDKAGP-HKEIYPYVIQE---LRPTLNEL 139 (152)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-CTTHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC-chhhHHHHHHH---HhhHHHHh
Confidence 57899999999999999999999855444432 25566675 43 24887765
No 374
>3v42_A Folliculin; tumor suppressor, protein binding; 2.00A {Homo sapiens}
Probab=47.84 E-value=14 Score=38.11 Aligned_cols=96 Identities=19% Similarity=0.275 Sum_probs=65.4
Q ss_pred cchHHHhccCChhhHHHHHHHHhccccEEEEeCCcchHHHHHHHHHHcccccCCCceeecccchhhhhhccCCcceEEec
Q 001039 205 ISFQPLVQLLDVDNLITLFTAVLLERRILLRSNKYSLLTLVSEAICHLIYPFRWQHVYIPLLFFSGVDYIDAPTPYMMGL 284 (1179)
Q Consensus 205 ~~~~~l~~~l~~~~~~~l~~~~L~E~~il~~s~~~~~ls~~~~al~~ll~P~~w~~~~IP~lP~~l~~~l~aP~P~iiGi 284 (1179)
.++..+.+-||.+++-.+..++|...+||+.+.+......++.+|..|| |-.-.. +. ..-.+|.++=.==|+|+
T Consensus 7 ~SLr~l~~vlG~~~F~~l~~~vl~GnQiIVrg~~~~~~~s~~~~L~~lL-P~~c~~----l~-~~s~~Y~~~~~cnilgl 80 (226)
T 3v42_A 7 KSLRHMRQVLGAPSFRMLAWHVLMGNQVIWKSRDVDLVQSAFEVLRTML-PVGCVR----II-PYSSQYEEAYRCNFLGL 80 (226)
T ss_dssp CCHHHHHHHHCHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHGGGS-CGGGCC----EE-EEESSCCCTTTCSEEEE
T ss_pred HHHHHHHHHHChHHHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHhC-CHHHHh----cc-ccchhhcchhheeeecC
Confidence 3688899999999999999999999999999999999999988888775 211100 00 01123444333447777
Q ss_pred cCCCCccc--cCCCcEEEEEcCCC
Q 001039 285 HSGVDTSN--LAMDGVVVVDLEYN 306 (1179)
Q Consensus 285 ~~~~~~~~--~~~~~~~~vdlD~~ 306 (1179)
..+..... ...+.++++|+|..
T Consensus 81 s~~v~iP~~v~~s~~~~i~~i~~~ 104 (226)
T 3v42_A 81 SPHVQIPPHVLSSEFAVIVEVHAA 104 (226)
T ss_dssp CTTCCCCHHHHTCTTEEEEEEEEC
T ss_pred CCCcccCcccccccceEEEeehhh
Confidence 66654432 13455677777543
No 375
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=46.49 E-value=4.8e+02 Score=31.78 Aligned_cols=227 Identities=7% Similarity=0.044 Sum_probs=115.6
Q ss_pred EEecCCCEEEEE-----eCCCcEEEEECCCCeEEE-EeecCCC--------cEEEEEEeCCCEEEEEEc-----------
Q 001039 888 AINSDRGKVVSG-----SDDQSVLVWDKQTSQLLE-ELKGHDA--------QVSCVRMLSGERVLTASH----------- 942 (1179)
Q Consensus 888 ~~s~d~~~l~sg-----s~dg~I~iwd~~t~~~~~-~~~~h~~--------~V~~l~~s~~~~l~sgs~----------- 942 (1179)
++++++++++.+ +....++++|+.+++.+. .+. ... ....++|.+++.++.+..
T Consensus 136 ~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~~~ 214 (711)
T 4hvt_A 136 NCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSSLY 214 (711)
T ss_dssp ECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTTSS
T ss_pred ecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cccccccccccccceeeEECCCEEEEEeCCCCCCcCcCCC
Confidence 467888876654 223479999999998763 122 111 113457776666665432
Q ss_pred CCeEEEEeCCCCe--EEEEeccCCC-cEEEEEEcCCCCE-----EEEEeC---CCeEEEEeCCC--CceeEEeecCCCCe
Q 001039 943 DGTVKMWDVRTDT--CVATVGRCSS-AVLCMEYDDSTGI-----LAAGGR---DAVANIWDIRA--GRQMHKFLGHTKWI 1009 (1179)
Q Consensus 943 dg~I~iwd~~~~~--~~~~~~~~~~-~v~~l~~sp~~~~-----l~sgs~---dg~I~iwD~~~--~~~~~~~~~~~~~I 1009 (1179)
..+|+.|.+-+.. -...+.+... .-.+...++++++ +++.+. ...+.+.|... ++ ...+.......
T Consensus 215 ~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~ 293 (711)
T 4hvt_A 215 PNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKINMPSDAT 293 (711)
T ss_dssp BCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECCSCTTCE
T ss_pred CCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEeecCCcce
Confidence 2568888776542 2222333222 2334556677663 343331 24566667653 32 23332222211
Q ss_pred EEEEEcCC-EEEE----------EeCCCcEEEEEccCCe-------eeEE-ee-cCCcCEEEEEEecCCCEEEEEeCCCc
Q 001039 1010 RSIRMDRD-TVIT----------GSDDWTARMWSISRGT-------CDAV-LA-CHAGPVQCVEYSSSDRGIITGSSDGL 1069 (1179)
Q Consensus 1010 ~sl~~~~~-~l~s----------gs~dg~I~iwd~~~~~-------~~~~-~~-~h~~~V~~l~~spdg~~l~sgs~Dg~ 1069 (1179)
. +...++ .++. ....+.|...|+.++. .... +. .....+..+.+..+ ..+++...++.
T Consensus 294 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~ 371 (711)
T 4hvt_A 294 L-QGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNVV 371 (711)
T ss_dssp E-EEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETTE
T ss_pred E-eeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECCE
Confidence 1 223233 3332 1256789999987642 2222 32 23456778888865 56677777765
Q ss_pred --EEEEEcCCCC-cceEEEeecccCceE--EEEecCCC-EEEEEEC---CCcEEEEeCC
Q 001039 1070 --LRFWENDDAG-GIKCVKNVTIHSSAI--LSINAGDH-WLGIGAA---DNSMSLFHRP 1119 (1179)
Q Consensus 1070 --I~iwd~~~~~-~~~~~~~~~~h~~~i--~sis~dg~-~lasgs~---Dg~I~iwd~~ 1119 (1179)
+.++|..++. ....+..+.. ...+ .+.++++. ++++.+. -+.+..+|+.
T Consensus 372 ~~l~~~~~~~g~~~~~~~i~lp~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 372 AKVVTFTLENEQWTKPVVLKLPY-QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEEEECEETTEECCCEEECCCS-TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEEEECCCCceEEEeccCCCC-CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 5667665531 1122111221 1223 33345554 4444433 3567777765
No 376
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=44.34 E-value=1e+02 Score=39.37 Aligned_cols=38 Identities=11% Similarity=0.215 Sum_probs=33.6
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEe
Q 001039 965 SAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKF 1002 (1179)
Q Consensus 965 ~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~ 1002 (1179)
..+.+++..++..++++-+.|+++++|++.+++++.+.
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 45778888888999999999999999999999988775
No 377
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=44.25 E-value=81 Score=40.25 Aligned_cols=32 Identities=6% Similarity=-0.044 Sum_probs=29.0
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001039 1147 AVVRCIASDLERKRICSGGRNGLLRLWEATIN 1178 (1179)
Q Consensus 1147 ~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~tg 1178 (1179)
..+.+++..++..++++-+.|+++|+|++.+|
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~ 267 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTN 267 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTT
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCC
Confidence 46788888899999999999999999999987
No 378
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=42.43 E-value=3.5e+02 Score=29.02 Aligned_cols=228 Identities=11% Similarity=0.039 Sum_probs=124.3
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCeEEE---------EeecCCCcEEEEEEeCCCEEEEEEcCCeEEEEeC---CC-----
Q 001039 891 SDRGKVVSGSDDQSVLVWDKQTSQLLE---------ELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDV---RT----- 953 (1179)
Q Consensus 891 ~d~~~l~sgs~dg~I~iwd~~t~~~~~---------~~~~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~---~~----- 953 (1179)
++...+++.+.+|.|+--.+.+-+... .++.++.-+..+..+..+.++..+..|.+.-+.. ..
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a 80 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA 80 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCC
Confidence 345678889999999877665422111 1233333333333346777888888888665543 22
Q ss_pred -CeEEEEe-c-cCCCcEEEEEEc---CCCCEEEEEeCCCeEEEEeCCC-------CceeEEeecCCCCeEEEEE-c-CCE
Q 001039 954 -DTCVATV-G-RCSSAVLCMEYD---DSTGILAAGGRDAVANIWDIRA-------GRQMHKFLGHTKWIRSIRM-D-RDT 1018 (1179)
Q Consensus 954 -~~~~~~~-~-~~~~~v~~l~~s---p~~~~l~sgs~dg~I~iwD~~~-------~~~~~~~~~~~~~I~sl~~-~-~~~ 1018 (1179)
|..+..+ . .....|.++..- .++.+++..+.+|.++-..+.. |.....+..+ +.+..+.. + .+.
T Consensus 81 ~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~ 159 (307)
T 1zi0_A 81 RGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDE 159 (307)
T ss_dssp CCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCE
T ss_pred CCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCE
Confidence 2221111 1 223456555432 3556788899999999987642 2222223333 34444333 3 357
Q ss_pred EEEEeCCCcEEEEEccC---------CeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCC------cceE
Q 001039 1019 VITGSDDWTARMWSISR---------GTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAG------GIKC 1083 (1179)
Q Consensus 1019 l~sgs~dg~I~iwd~~~---------~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~------~~~~ 1083 (1179)
++..+.+|.+..++... |.....+. ....|.++....++..+++.+..|.++-.++..-. ....
T Consensus 160 i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~ 238 (307)
T 1zi0_A 160 VMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVI 238 (307)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEE
T ss_pred EEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEE
Confidence 88888999888887643 11111122 24557677655566788899999999988774311 1111
Q ss_pred EEeecccCceEEEE--ecCCCEEEEEECCCcEEEEeCCC
Q 001039 1084 VKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQ 1120 (1179)
Q Consensus 1084 ~~~~~~h~~~i~si--s~dg~~lasgs~Dg~I~iwd~~~ 1120 (1179)
...+......+..+ ..+..-+...+.+|.+.-+++..
T Consensus 239 ~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 239 SIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp SSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred eeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 11222222344333 22445566677778777777653
No 379
>2ab9_A Pro-SFTI-1; protein, beta-sheet, random coil, hydrolase inhibitor; NMR {Helianthus annuus}
Probab=41.97 E-value=10 Score=24.17 Aligned_cols=13 Identities=15% Similarity=0.406 Sum_probs=10.8
Q ss_pred CCCCCcccCCCce
Q 001039 53 PPQLSTCVLPAGV 65 (1179)
Q Consensus 53 ~~~~~~fc~P~g~ 65 (1179)
-.++|..|||+|-
T Consensus 18 tksippicfpdgr 30 (31)
T 2ab9_A 18 TKSIPPICFPDGR 30 (31)
T ss_dssp CSSSSCSSSSCCC
T ss_pred cccCCCcccCCCC
Confidence 4788999999983
No 380
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=37.58 E-value=4.6e+02 Score=29.01 Aligned_cols=234 Identities=11% Similarity=0.032 Sum_probs=127.0
Q ss_pred CCCEEEEEEcCCeEEEEeCCC---------CeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeC---CC-----
Q 001039 933 SGERVLTASHDGTVKMWDVRT---------DTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDI---RA----- 995 (1179)
Q Consensus 933 ~~~~l~sgs~dg~I~iwd~~~---------~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~---~~----- 995 (1179)
+...+++.+.+|.|+--.+.+ |.....++ ..+.+..+........++..+..|.++-+.. ..
T Consensus 6 ~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a 84 (370)
T 3l6v_A 6 PEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNA 84 (370)
T ss_dssp CCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTS
T ss_pred CCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCccc
Confidence 466788999999999765321 22223333 3456666666666677887888888766543 22
Q ss_pred -CceeEEe-e-cCCCCeEEEEE-c----CCEEEEEeCCCcEEEEEccC-------CeeeEEeecCCcCEEEEEEecCCCE
Q 001039 996 -GRQMHKF-L-GHTKWIRSIRM-D----RDTVITGSDDWTARMWSISR-------GTCDAVLACHAGPVQCVEYSSSDRG 1060 (1179)
Q Consensus 996 -~~~~~~~-~-~~~~~I~sl~~-~----~~~l~sgs~dg~I~iwd~~~-------~~~~~~~~~h~~~V~~l~~spdg~~ 1060 (1179)
|..+..+ . .....|.++.. . ..+++.++..|.++...+.. |.....+.. .+.+..+....+...
T Consensus 85 ~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~~~~~ 163 (370)
T 3l6v_A 85 RGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTDGDRD 163 (370)
T ss_dssp CCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEECSCCE
T ss_pred CCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeCCCce
Confidence 2222111 1 22345555443 2 34899999999999988643 222222322 345555655556667
Q ss_pred EEEEeCCCcEEEEEcCCCC------cceEEEeecccCceEEEE--ec---------------------------------
Q 001039 1061 IITGSSDGLLRFWENDDAG------GIKCVKNVTIHSSAILSI--NA--------------------------------- 1099 (1179)
Q Consensus 1061 l~sgs~Dg~I~iwd~~~~~------~~~~~~~~~~h~~~i~si--s~--------------------------------- 1099 (1179)
++..+.+|.+..++...-. .......+. ....|.++ ..
T Consensus 164 i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~ 242 (370)
T 3l6v_A 164 VLLFASNGKTVRFGESTVRSMGRTATGVRGIRLA-KGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVAD 242 (370)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEECCC-------------------------------
T ss_pred EEEEeCCCeEEEEEccccCccCCCCCCeeeEEeC-CCCEEEEEEEecccccccccccccccccccccccccccccccccc
Confidence 8888899988888754311 011111111 12223222 11
Q ss_pred --CCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001039 1100 --GDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEA 1175 (1179)
Q Consensus 1100 --dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv 1175 (1179)
++..+++.+..|..+...+..-+.....+.| ...+ .+....+.+..+.+..++..+...+..|.+.-..+
T Consensus 243 ~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kG-----v~~~-k~~~~~g~lv~~~~v~~~d~i~liT~~G~~iR~~v 314 (370)
T 3l6v_A 243 NGDVAYILTATENGYGKRTPLAEYPRKGRGTQG-----VIGI-QTTERNGKLVRAVLLGSTDEVMLISDGGTLVRTRG 314 (370)
T ss_dssp ----CEEEEEETTSEEEEEEGGGSCCBCTTSCC-----EESS-CCCTTTCSEEEEEEECTTCEEEEEETTCCEEEEEG
T ss_pred ccCCceEEEeeCCCCEEEEEHHHhcccccCCcc-----eEEE-EecCCCCcEEEEEEeCCCceEEEEcCCCeEEEeeH
Confidence 4568889999999999888654432222222 1111 22222334555444444455555666666554443
No 381
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=37.31 E-value=3.9e+02 Score=28.12 Aligned_cols=186 Identities=10% Similarity=0.057 Sum_probs=106.2
Q ss_pred CCCEEEEEEcCCeEEEEe---CCCCeEEEEeccCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCc------eeEEe
Q 001039 933 SGERVLTASHDGTVKMWD---VRTDTCVATVGRCSSAVLCMEYDD-STGILAAGGRDAVANIWDIRAGR------QMHKF 1002 (1179)
Q Consensus 933 ~~~~l~sgs~dg~I~iwd---~~~~~~~~~~~~~~~~v~~l~~sp-~~~~l~sgs~dg~I~iwD~~~~~------~~~~~ 1002 (1179)
..+.++.-+.+|.++--. +..+.....+ .....|..+.... +...++..+.+|.++-..+..-. ....+
T Consensus 34 t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll-~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~l 112 (276)
T 3no0_A 34 FTEGLFLVSNRGRVYWIAGSQALQGSKVSLK-SREEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKL 112 (276)
T ss_dssp TTSCEEEEETTSEEEEECSHHHHTSEECCCS-STTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCC
T ss_pred CCCEEEEEcCCCeEEEEEhhhCccCcccccC-CCCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEec
Confidence 455666677777665433 2222111113 2345566654422 56789999999999998865432 12223
Q ss_pred ecCCCCeEEEEE--cCCEEEEEeCCCcEEEEEccC---------CeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEE
Q 001039 1003 LGHTKWIRSIRM--DRDTVITGSDDWTARMWSISR---------GTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLR 1071 (1179)
Q Consensus 1003 ~~~~~~I~sl~~--~~~~l~sgs~dg~I~iwd~~~---------~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~ 1071 (1179)
... ..+..+.. ..+.++..+.+|.+..++... |.....+. ....|.++...+++..++..+..|.++
T Consensus 113 keg-D~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~~~~ll~~T~~G~~k 190 (276)
T 3no0_A 113 TEG-DEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDETSGLRIWNGEPYLLVITAKGRVK 190 (276)
T ss_dssp CTT-CCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEESSCSEEEEEETTSCEE
T ss_pred CCC-CEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCEEEEEEEeCCCCEEEEEeCCCcEE
Confidence 222 33444333 344788889999988887532 22211222 235677776666777899999999999
Q ss_pred EEEcCCCC----cceEEEeecccCceEEEE--ecCCCEEEEEECCCcEEE--EeCCCCC
Q 001039 1072 FWENDDAG----GIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSL--FHRPQER 1122 (1179)
Q Consensus 1072 iwd~~~~~----~~~~~~~~~~h~~~i~si--s~dg~~lasgs~Dg~I~i--wd~~~~~ 1122 (1179)
...+..-. ..+-+..+ .....+..+ ..++..++..+.+|.+.. ++...-+
T Consensus 191 r~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~i~ 248 (276)
T 3no0_A 191 KISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKDIP 248 (276)
T ss_dssp EEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGGSC
T ss_pred EeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHHCC
Confidence 88865411 11112222 223334333 234456777788888888 8876433
No 382
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=35.31 E-value=8.5e+02 Score=31.43 Aligned_cols=36 Identities=17% Similarity=0.209 Sum_probs=28.5
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEe
Q 001039 1048 PVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKN 1086 (1179)
Q Consensus 1048 ~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~ 1086 (1179)
.+.+++..++..++++-+.|+++|+|++.+ ..++.+
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t---~~~v~t 274 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLST---NQCVET 274 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTT---TEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCC---CCeEEe
Confidence 345566777889999999999999999998 345444
No 383
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=35.00 E-value=4.7e+02 Score=28.34 Aligned_cols=234 Identities=9% Similarity=0.014 Sum_probs=124.9
Q ss_pred CCEEEEEEcCCeEEEEeCCC-------CeEEEEec-cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEe---CCC------C
Q 001039 934 GERVLTASHDGTVKMWDVRT-------DTCVATVG-RCSSAVLCMEYDDSTGILAAGGRDAVANIWD---IRA------G 996 (1179)
Q Consensus 934 ~~~l~sgs~dg~I~iwd~~~-------~~~~~~~~-~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD---~~~------~ 996 (1179)
...+++.+.+|.|+--.+.+ ++-...+. ...+.+..+........++.-+..|.++-.. +.. |
T Consensus 3 E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G 82 (327)
T 3uc1_A 3 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARG 82 (327)
T ss_dssp CEEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCC
T ss_pred ccEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCC
Confidence 34577888888888665322 11111111 1234455555555666677777788766554 332 2
Q ss_pred ceeEEee--cCCCCeEEEE-Ec----CCEEEEEeCCCcEEEEEccCC-------eeeEEeecCCcCEEEEEEecCCCEEE
Q 001039 997 RQMHKFL--GHTKWIRSIR-MD----RDTVITGSDDWTARMWSISRG-------TCDAVLACHAGPVQCVEYSSSDRGII 1062 (1179)
Q Consensus 997 ~~~~~~~--~~~~~I~sl~-~~----~~~l~sgs~dg~I~iwd~~~~-------~~~~~~~~h~~~V~~l~~spdg~~l~ 1062 (1179)
.++..+- .....|.++. .. ...++..+.+|.++-..+..- .....+.. ...+..+........++
T Consensus 83 ~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~il 161 (327)
T 3uc1_A 83 QHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLL 161 (327)
T ss_dssp EEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEE
T ss_pred EEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEE
Confidence 2221111 1234455543 33 458999999999999886542 11122332 34566665556667888
Q ss_pred EEeCCCcEEEEEcC--CC----C--cceEEEeecccCceEEEE--ecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCc
Q 001039 1063 TGSSDGLLRFWEND--DA----G--GIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSK 1132 (1179)
Q Consensus 1063 sgs~Dg~I~iwd~~--~~----~--~~~~~~~~~~h~~~i~si--s~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~ 1132 (1179)
..+..|.+..+... .- . .......+. ....|.++ ..++..++..+..|.++.-.+..-........|
T Consensus 162 l~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G-- 238 (327)
T 3uc1_A 162 LVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKG-- 238 (327)
T ss_dssp EEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCC--
T ss_pred EEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCc--
Confidence 89999998888776 31 1 111111122 23345444 235568889999999998887543221111112
Q ss_pred cccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001039 1133 MSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEA 1175 (1179)
Q Consensus 1133 ~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv 1175 (1179)
...+ .+..-.+.+..+....+...++..+.+|.+.-+++
T Consensus 239 ---~~~~-~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~ 277 (327)
T 3uc1_A 239 ---VLTV-MYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAA 277 (327)
T ss_dssp ---EESS-CCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEG
T ss_pred ---EEEE-EecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEeh
Confidence 1111 12221223444444444556666777777666654
No 384
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=32.73 E-value=6.1e+02 Score=28.96 Aligned_cols=103 Identities=8% Similarity=0.012 Sum_probs=60.2
Q ss_pred CcEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCC---ceeEEee---------cCCCCeEEEEEcCC-----EEEEE-eC-
Q 001039 965 SAVLCMEYDDSTG-ILAAGGRDAVANIWDIRAG---RQMHKFL---------GHTKWIRSIRMDRD-----TVITG-SD- 1024 (1179)
Q Consensus 965 ~~v~~l~~sp~~~-~l~sgs~dg~I~iwD~~~~---~~~~~~~---------~~~~~I~sl~~~~~-----~l~sg-s~- 1024 (1179)
...+.|+|.|+|. .++++...|.|++++.... ..+..+. ........|+++++ .|.+. +.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 4568899999996 4666678899999975422 1222221 11456788999875 33322 21
Q ss_pred -C----------CcEEEEEccC----------CeeeEEee--cCCcCEEEEEEecCCCEEEEEeCC
Q 001039 1025 -D----------WTARMWSISR----------GTCDAVLA--CHAGPVQCVEYSSSDRGIITGSSD 1067 (1179)
Q Consensus 1025 -d----------g~I~iwd~~~----------~~~~~~~~--~h~~~V~~l~~spdg~~l~sgs~D 1067 (1179)
+ ..|.-|.+.. .+.+..+. ........|+|.|||.+.++.+..
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 1 1344455532 12222322 222346789999999887776543
No 385
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=29.04 E-value=6.3e+02 Score=28.01 Aligned_cols=229 Identities=12% Similarity=0.028 Sum_probs=131.1
Q ss_pred ccEEEEecCCCEEEEEeCCCcEEEEECCCC-eE------------EEEeecCCCcEEEEEEeCCCEEEEEEcCCeEEEEe
Q 001039 884 RTVRAINSDRGKVVSGSDDQSVLVWDKQTS-QL------------LEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWD 950 (1179)
Q Consensus 884 ~~v~~~s~d~~~l~sgs~dg~I~iwd~~t~-~~------------~~~~~~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd 950 (1179)
..|..++....+.+.-..||.|..|-.... ++ ...+. -...|..++.. ....++-..||.|..|-
T Consensus 59 ~~i~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~-l~~~i~~va~G-~~hs~alt~~G~v~~wG 136 (413)
T 1a12_A 59 EDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVE-LQEKVVQVSAG-DSHTAALTDDGRVFLWG 136 (413)
T ss_dssp SCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEECC-CCSCEEEEEEC-SSEEEEEETTSCEEEEE
T ss_pred CCeEEEEeCCCeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEec-CCCcEEEEecC-CCeEEEEcCCCcEEEee
Confidence 567778777788888889999999965421 00 01111 12356555543 34555667889999997
Q ss_pred C--CC-CeE-----------EEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee-----------------
Q 001039 951 V--RT-DTC-----------VATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQM----------------- 999 (1179)
Q Consensus 951 ~--~~-~~~-----------~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~----------------- 999 (1179)
. .. ++. ...+ .....|..++.. ....++-+.||.|+.|-....-++
T Consensus 137 ~~~n~~GqlG~~~~~~~~~~P~~v-~~~~~i~~ia~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~ 213 (413)
T 1a12_A 137 SFRDNNGVIGLLEPMKKSMVPVQV-QLDVPVVKVASG--NDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLE 213 (413)
T ss_dssp CEEETTEEEESSBBTBCEEEEEEE-CCSSCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHH
T ss_pred CCcCCCCccCcCCccccccCCEEe-cCCCCEEEEEec--CceEEEEcCCCCEEEeeCCCCCccCCCcccccccccccccc
Confidence 5 21 110 1111 123456665553 334555668899999965431110
Q ss_pred -----EEeec------CCCCeEEEEEcCCEEEEEeCCCcEEEEEccCC-e----------eeEEeecCC---cCEEEEEE
Q 001039 1000 -----HKFLG------HTKWIRSIRMDRDTVITGSDDWTARMWSISRG-T----------CDAVLACHA---GPVQCVEY 1054 (1179)
Q Consensus 1000 -----~~~~~------~~~~I~sl~~~~~~l~sgs~dg~I~iwd~~~~-~----------~~~~~~~h~---~~V~~l~~ 1054 (1179)
..... ....|..++......++-..||.|+.|-.... + ....+.... ..|..++.
T Consensus 214 ~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~ 293 (413)
T 1a12_A 214 RLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSG 293 (413)
T ss_dssp HHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEE
T ss_pred ccccCceEeeccccccCCccEEEEEeCCCEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEec
Confidence 01111 22467788877777777789999999975431 0 111111111 23665554
Q ss_pred ecCCCEEEEEeCCCcEEEEEcCCCCc--------ceEEEeecccCceEEEEecCCCEEEEEECCCcEEEEeCC
Q 001039 1055 SSSDRGIITGSSDGLLRFWENDDAGG--------IKCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRP 1119 (1179)
Q Consensus 1055 spdg~~l~sgs~Dg~I~iwd~~~~~~--------~~~~~~~~~h~~~i~sis~dg~~lasgs~Dg~I~iwd~~ 1119 (1179)
. ....+.-..||.|+.|-....++ ..........-..|..++......++-..||.|+.|-..
T Consensus 294 G--~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l~~v~~v~~G~~hs~alt~~G~v~~wG~n 364 (413)
T 1a12_A 294 G--QHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVACGASVGYAVTKDGRVFAWGMG 364 (413)
T ss_dssp C--SSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSSSEEEEEECSSEEEEEETTSCEEEEECC
T ss_pred c--cceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEecccCceeEEEECcceEEEEeCCCCEEEecCC
Confidence 3 44555566899999997543111 011111111122678888777777778899999999765
No 386
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=27.75 E-value=1.1e+02 Score=40.02 Aligned_cols=37 Identities=11% Similarity=0.213 Sum_probs=31.7
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEe
Q 001039 966 AVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKF 1002 (1179)
Q Consensus 966 ~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~ 1002 (1179)
.+.+++..++..++++-+.|+++++||+.+++++.+.
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 4556667788899999999999999999999998775
No 387
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=26.41 E-value=77 Score=38.57 Aligned_cols=37 Identities=8% Similarity=0.193 Sum_probs=32.1
Q ss_pred cEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeec
Q 001039 885 TVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKG 921 (1179)
Q Consensus 885 ~v~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~ 921 (1179)
.|.++..+..++++-+.|.++|+||+.+++++.+..-
T Consensus 223 ~Is~~~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLFHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEeccCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4556677889999999999999999999999887664
No 388
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=21.53 E-value=1.1e+02 Score=37.24 Aligned_cols=38 Identities=11% Similarity=0.112 Sum_probs=30.8
Q ss_pred CCeEEEEEcCCEEEEEeCCCcEEEEEccCCeeeEEeec
Q 001039 1007 KWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLAC 1044 (1179)
Q Consensus 1007 ~~I~sl~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 1044 (1179)
..|.++.++..++++-+.|.++|+||+++++++.+..-
T Consensus 222 ~~Is~~~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLFHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEeccCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 34666677778999999999999999999988877653
No 389
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=20.40 E-value=7.5e+02 Score=25.85 Aligned_cols=200 Identities=9% Similarity=-0.017 Sum_probs=108.7
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEeC---CCCceeEEeecCCCCeEEEEEc---CCEEEEEeCCCcEEEEEccCCe
Q 001039 964 SSAVLCMEYDDSTGILAAGGRDAVANIWDI---RAGRQMHKFLGHTKWIRSIRMD---RDTVITGSDDWTARMWSISRGT 1037 (1179)
Q Consensus 964 ~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~---~~~~~~~~~~~~~~~I~sl~~~---~~~l~sgs~dg~I~iwd~~~~~ 1037 (1179)
.+.+..+........++.-+.+|.++-..+ ..+.... +......|.++... ...++..+.+|.++-..+..-.
T Consensus 23 gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-ll~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~ 101 (276)
T 3no0_A 23 KAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-LKSREEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFE 101 (276)
T ss_dssp CCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC-CSSTTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTT
T ss_pred CCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc-cCCCCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhh
Confidence 344555554445555666677787665432 2221111 12234455555432 3589999999999998875432
Q ss_pred ------eeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCC------cceEEEeecccCceEEEE--ecCCCE
Q 001039 1038 ------CDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAG------GIKCVKNVTIHSSAILSI--NAGDHW 1103 (1179)
Q Consensus 1038 ------~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~------~~~~~~~~~~h~~~i~si--s~dg~~ 1103 (1179)
....+. ....+..+....+...++..+..|.+..++...-. .......+.. ...+.++ ..++..
T Consensus 102 ~~~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~~ 179 (276)
T 3no0_A 102 YKAQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEK-NDETSGLRIWNGEPY 179 (276)
T ss_dssp TCSTTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT-TCCEEEEEEESSCSE
T ss_pred hhcCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCCCE
Confidence 111222 23456666555566788889999998888754311 1111112222 2344443 345678
Q ss_pred EEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEE--EEC
Q 001039 1104 LGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRL--WEA 1175 (1179)
Q Consensus 1104 lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~v--Wdv 1175 (1179)
++..+..|.++...+..-......+.| . ..+ ...+.+..+....+...++..+.+|.+.. +++
T Consensus 180 ll~~T~~G~~kr~~~~e~~~~~R~gkG--v---~~i----~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~ 244 (276)
T 3no0_A 180 LLVITAKGRVKKISHEEIPKTNRGVKG--T---EVS----GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQ 244 (276)
T ss_dssp EEEEETTSCEEEEEGGGSCCCCTTCCC--E---ECC----CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEG
T ss_pred EEEEeCCCcEEEeEHHHcccCCCCCcc--e---EEE----cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCH
Confidence 888999999999987643222111111 1 111 12233444443334445666777887766 654
Done!