BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001040
(1178 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TOJ|A Chain A, Structure Of The Spry Domain Of Human Ash2l
pdb|3TOJ|B Chain B, Structure Of The Spry Domain Of Human Ash2l
Length = 213
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 87/180 (48%), Gaps = 29/180 (16%)
Query: 120 VRIAKLPLLVESLAMFSSARANVCVWKGKWMYEVTLE---TSGVQQLGWA----TLSCPF 172
++I+ L V +S RA+ V KG W +E+T++ +LGW+ L P
Sbjct: 24 LKISDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNLQAP- 82
Query: 173 TDHKGVGDADDSYAFDGRRVKKWNKE-AEPYGQSWVAGDIIGCCIDLDSDEIS------- 224
+G SY++ ++ K+++ + Y + GD++G I+L D IS
Sbjct: 83 -----LGYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTISGRGSSEI 137
Query: 225 -FYRNGVSLGVAFSGIRKMGPGFGYYPAVSLSQGERCVLNFGARPFKYPIN--CYLPLQE 281
FY+NGV+ GVA+ I + Y+PA+SL + +NFG FKYP Y P+ +
Sbjct: 138 IFYKNGVNQGVAYKDIFEG----VYFPAISLYKSCTVSINFGP-CFKYPPKDLTYRPMSD 192
>pdb|3EK9|A Chain A, Spry Domain-Containing Socs Box Protein 2: Crystal
Structure And Residues Critical For Protein Binding
Length = 213
Score = 33.9 bits (76), Expect = 0.62, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 17/123 (13%)
Query: 149 WMYEVTLETSGVQQL-GWATLSCPF-TDHKG--VGDADDSYAFDGRRVKKWNKE------ 198
W LE G + G AT P DH +G +S+ +D R K +++
Sbjct: 80 WEISWPLEQRGTHAVVGVATALAPLQADHYAALLGSNSESWGWDIGRGKLYHQSKGLEAP 139
Query: 199 ---AEPYGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFGYYPAVSLS 255
A P G+ V + + +D++ + + G LG AF G++ G YP+VS
Sbjct: 140 QYPAGPQGEQLVVPERLLVVLDMEEGTLGYSIGGTYLGPAFRGLK----GRTLYPSVSAV 195
Query: 256 QGE 258
G+
Sbjct: 196 WGQ 198
>pdb|2AFJ|A Chain A, Spry Domain-Containing Socs Box Protein 2 (Ssb-2)
Length = 226
Score = 33.5 bits (75), Expect = 0.64, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 17/123 (13%)
Query: 149 WMYEVTLETSGVQQL-GWATLSCPF-TDHKG--VGDADDSYAFDGRRVKKWNKE------ 198
W LE G + G AT P DH +G +S+ +D R K +++
Sbjct: 86 WEISWPLEQRGTHAVVGVATALAPLQADHYAALLGSNSESWGWDIGRGKLYHQSKGLEAP 145
Query: 199 ---AEPYGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFGYYPAVSLS 255
A P G+ V + + +D++ + + G LG AF G++ G YP+VS
Sbjct: 146 QYPAGPQGEQLVVPERLLVVLDMEEGTLGYSIGGTYLGPAFRGLK----GRTLYPSVSAV 201
Query: 256 QGE 258
G+
Sbjct: 202 WGQ 204
>pdb|1LWD|A Chain A, Crystal Structure Of Nadp-Dependent Isocitrate
Dehydrogenase From Porcine Heart Mitochondria
pdb|1LWD|B Chain B, Crystal Structure Of Nadp-Dependent Isocitrate
Dehydrogenase From Porcine Heart Mitochondria
Length = 413
Score = 33.5 bits (75), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%)
Query: 597 QQSFPIGLFLKNDLLRADISRLGGSFSHLLKSHPVDDQDAEVIRWEEGYMDDEETRVCHL 656
Q+ +P+ + KN +L+A R F + + H D D I +E +DD +V
Sbjct: 202 QKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKYKIWYEHRLIDDMVAQVLKS 261
Query: 657 SEHKPCCCSSYDAE 670
S C +YD +
Sbjct: 262 SGGFVWACKNYDGD 275
>pdb|2JK9|A Chain A, The Structure Of Spla-Ryanodine Receptor Domain And Socs
Box Containing 1 In Complex With A Par-4 Peptide
Length = 212
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 14/91 (15%)
Query: 178 VGDADDSYAFDGRRVKKW----NKEAEPY------GQSWVAGDIIGCCIDLDSDEISFYR 227
VG+ +S+ +D R + + N+ ++ Y ++++ D +D+D +SF
Sbjct: 112 VGNNHESWGWDLGRNRLYHDGKNQPSKTYPAFLEPDETFIVPDSFLVALDMDDGTLSFIV 171
Query: 228 NGVSLGVAFSGIRKMGPGFGYYPAVSLSQGE 258
+G +GVAF G++ G YP VS G
Sbjct: 172 DGQYMGVAFRGLK----GKKLYPVVSAVWGH 198
>pdb|3F2O|A Chain A, Crystal Structure Of Human SplaRYANODINE RECEPTOR DOMAIN
AND SOCS BOX Containing 1 (Spsb1) In Complex With A
20-Residue Vasa Peptide
pdb|3F2O|B Chain B, Crystal Structure Of Human SplaRYANODINE RECEPTOR DOMAIN
AND SOCS BOX Containing 1 (Spsb1) In Complex With A
20-Residue Vasa Peptide
Length = 233
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 14/91 (15%)
Query: 178 VGDADDSYAFDGRRVKKW----NKEAEPY------GQSWVAGDIIGCCIDLDSDEISFYR 227
VG+ +S+ +D R + + N+ ++ Y ++++ D +D+D +SF
Sbjct: 133 VGNNHESWGWDLGRNRLYHDGKNQPSKTYPAFLEPDETFIVPDSFLVALDMDDGTLSFIV 192
Query: 228 NGVSLGVAFSGIRKMGPGFGYYPAVSLSQGE 258
+G +GVAF G++ G YP VS G
Sbjct: 193 DGQYMGVAFRGLK----GKKLYPVVSAVWGH 219
>pdb|2V24|A Chain A, Structure Of The Human Spry Domain-Containing Socs Box
Protein Ssb-4
Length = 208
Score = 31.2 bits (69), Expect = 3.8, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 216 IDLDSDEISFYRNGVSLGVAFSGIRKMGPGFGYYPAVSLSQG 257
+D+D +SF +G LGVAF G++ G YP VS G
Sbjct: 156 LDMDEGTLSFIVDGQYLGVAFRGLK----GKKLYPVVSAVWG 193
>pdb|2YYO|A Chain A, Crystal Sturcture Of Human Spry Domain
Length = 171
Score = 30.0 bits (66), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 47/112 (41%), Gaps = 23/112 (20%)
Query: 161 QQLGWATLSCPFTDHKGVGDADDSYAFDGRRVKKWNKEAEPYGQSWVAGDIIGCCI---- 216
Q GW S + ADD ++GR + +G +GD IGC I
Sbjct: 69 HQPGWLPDSVAY-------HADDGKLYNGR------AKGRQFGSKCNSGDRIGCGIEPVS 115
Query: 217 -DLDSDEISFYRNGVSLGVAFSGIRKMGPGFGYYPAVSL-SQGERCVLNFGA 266
D+ + +I F +NG +G S I P G +PAV S GE L+ A
Sbjct: 116 FDVQTAQIFFTKNGKRVG---STIXPXSPD-GLFPAVGXHSLGEEVRLHLNA 163
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,507,995
Number of Sequences: 62578
Number of extensions: 1296005
Number of successful extensions: 2554
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2550
Number of HSP's gapped (non-prelim): 8
length of query: 1178
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1068
effective length of database: 8,089,757
effective search space: 8639860476
effective search space used: 8639860476
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)