Query 001040
Match_columns 1178
No_of_seqs 241 out of 1187
Neff 4.7
Searched_HMMs 46136
Date Thu Mar 28 14:08:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001040.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001040hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4692 Predicted E3 ubiquitin 100.0 5E-102 1E-106 841.8 23.3 329 845-1175 2-364 (489)
2 KOG0349 Putative DEAD-box RNA 100.0 3.2E-29 7E-34 280.8 13.2 222 46-285 30-264 (725)
3 KOG2626 Histone H3 (Lys4) meth 99.9 3.4E-27 7.3E-32 271.4 13.8 195 104-307 288-533 (544)
4 smart00449 SPRY Domain in SPla 99.9 5.8E-21 1.3E-25 184.0 15.4 118 146-266 1-121 (122)
5 PF00622 SPRY: SPRY domain; I 99.9 4.7E-21 1E-25 183.9 14.2 120 146-268 1-124 (124)
6 KOG4030 Uncharacterized conser 99.7 2.4E-16 5.1E-21 158.2 16.2 160 107-279 27-190 (197)
7 KOG2243 Ca2+ release channel ( 99.6 4.1E-16 8.8E-21 186.7 10.7 135 140-279 1099-1246(5019)
8 KOG2242 Scaffold/matrix specif 99.6 5.9E-17 1.3E-21 193.7 0.7 546 182-785 8-556 (558)
9 PF10408 Ufd2P_core: Ubiquitin 99.5 7.3E-12 1.6E-16 153.4 33.9 342 753-1135 176-579 (629)
10 KOG3953 SOCS box protein SSB-1 99.4 3.3E-12 7.2E-17 136.5 14.2 164 109-279 27-208 (242)
11 KOG4367 Predicted Zn-finger pr 99.4 4.1E-12 8.8E-17 143.6 13.4 153 108-267 534-695 (699)
12 KOG2243 Ca2+ release channel ( 99.2 3.5E-12 7.6E-17 153.9 3.1 153 122-279 643-828 (5019)
13 KOG1477 SPRY domain-containing 98.7 3.7E-08 8E-13 117.0 9.4 162 108-276 31-213 (469)
14 KOG1477 SPRY domain-containing 97.5 2.9E-05 6.3E-10 92.9 1.4 87 185-276 1-90 (469)
15 KOG2042 Ubiquitin fusion degra 96.9 0.026 5.6E-07 72.2 18.0 292 812-1134 457-801 (943)
16 COG5113 UFD2 Ubiquitin fusion 94.5 2.5 5.4E-05 52.4 19.4 292 759-1074 382-732 (929)
17 KOG2242 Scaffold/matrix specif 94.4 0.009 1.9E-07 73.4 -0.8 116 160-280 107-227 (558)
18 PF13765 PRY: SPRY-associated 78.8 2.1 4.6E-05 36.4 3.1 23 109-131 1-23 (49)
19 smart00588 NEUZ domain in neur 67.1 87 0.0019 31.9 11.9 99 116-228 9-123 (123)
20 smart00589 PRY associated with 49.7 19 0.0004 30.0 3.2 25 108-132 3-27 (52)
21 PF07177 Neuralized: Neuralize 48.7 65 0.0014 29.7 6.7 55 113-168 6-67 (69)
22 KOG2188 Predicted RNA-binding 33.2 2.6E+02 0.0057 35.8 10.5 207 753-981 368-613 (650)
23 PF11598 COMP: Cartilage oligo 30.5 48 0.001 28.5 2.7 22 1022-1043 9-32 (45)
24 PF05327 RRN3: RNA polymerase 29.1 2.5E+02 0.0054 35.5 9.7 29 991-1021 51-83 (563)
25 KOG0612 Rho-associated, coiled 21.2 2.9E+02 0.0062 38.0 8.3 110 747-860 24-150 (1317)
No 1
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-102 Score=841.78 Aligned_cols=329 Identities=42% Similarity=0.669 Sum_probs=311.0
Q ss_pred HHHHHH----HHhhccCCcccccchHHHHHHHHHhhhhcccCCCCCCCchhH--HHhhHHHHHHHHHHhhcCCcccCcch
Q 001040 845 VWVVQL----LLVLSKVDSVFIYIPEFYLEALVDCFHVLRKSDPPFVPSTIF--IKQGLASFVTFVVTHFNDPRISSADL 918 (1178)
Q Consensus 845 ~Wl~~~----l~~~s~~~~lF~fvPefYle~l~~~~h~lr~~~~p~~~~~~~--~~~~l~~~~~fL~~hf~D~RIv~~d~ 918 (1178)
+||++. +.++|++||||+||||+||+++++++.++.++++|.-...++ +++.++++|+||..||+|||||.+|+
T Consensus 2 ~wll~~~lrtl~~~~~tgslfsfvpe~yvn~~~~~~~av~d~~~~l~a~~e~~~~e~sv~~~a~~l~~h~ad~riv~a~~ 81 (489)
T KOG4692|consen 2 IWLLERMLRTLTTASNTGSLFSFVPEVYVNTLPILLDAVMDFSHDLKAQFEASDAECSVNAAAEFLGIHSADPRIVLASC 81 (489)
T ss_pred hHHHHHHHHHhhccCCCcchhhhchHHHHHhhHHHHHHHHHhCcchhhhhcCCCchhhHHHHHHHHhhccCCceeeechh
Confidence 399874 558999999999999999999999988888887776665544 79999999999999999999999999
Q ss_pred hHHHHHHHHHHhccHHHHHHHhcc-HHHHHhhHHHhhhccCCCCcchhhHHHHHhhcCCCccccCCCCC-----------
Q 001040 919 RDLLLQSISVLVQYKDYLAAFESN-EAATLRLPKALISAFDNRSWIPVTNILLRLCKGHGFGSSKHGES----------- 986 (1178)
Q Consensus 919 kd~llq~l~~l~~~~~~l~a~E~~-~~a~~~~v~~ll~~~d~r~W~~~~~iLlR~~~G~GF~~~k~~~~----------- 986 (1178)
||+|||+|++|+|||.+++|+||. +++|++||+|||+|||||+|+||||||+|||||+||+|+|++.|
T Consensus 82 kdsllqal~t~~c~~~~vraler~~k~sq~smvraLLapyenR~W~q~nwillRlw~G~Gf~y~~~r~phl~rsr~~n~~ 161 (489)
T KOG4692|consen 82 KDSLLQALGTLTCHKSGVRALERTSKRSQASMVRALLAPYENRSWIQVNWILLRLWKGSGFSYLKNREPHLCRSRSRNET 161 (489)
T ss_pred HHHHHHHhhheeechhhhhHHHhccHhhHHHHHHHHhhhhhcCCchhhhHHHHHHHccCCccccccCCchhhhhhhcccc
Confidence 999999999999999999999999 79999999999999999999999999999999999999987754
Q ss_pred ------CCchHHHHHHHHHHHhcCCcchHHHHHHHhhhhchhHHHHHHHHHHHHhhhcchh------hhhhhhhhhhHhH
Q 001040 987 ------SSSSVIFQRLLREACINDEGLFSTFLNRLFNTLSWTMTEFSISIREMQEKYQVSE------FQQKKCCVIFDLS 1054 (1178)
Q Consensus 987 ------~~~S~~fQ~~l~e~l~~~~~~~~~FLn~~ln~LNWa~sEF~~~~qEiq~~~~v~~------~qqr~C~~~FeLs 1054 (1178)
++||++||+||+..|++|+|++++|||||||||||||||||+|+|||||+.++.| +|||||+||||||
T Consensus 162 ~~sl~~p~pst~fQ~ll~a~ll~dgp~a~tFLNsvlnqLnWafsEFi~~vqEiQ~~aqr~E~~~~e~~Qlk~C~~cFeLs 241 (489)
T KOG4692|consen 162 HTSLSSPAPSTVFQALLRAALLNDGPLASTFLNSVLNQLNWAFSEFIVSVQEIQEKAQRMENTLFEPFQLKKCCVCFELS 241 (489)
T ss_pred cccccCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhccCHHHHhHhhhhHHHH
Confidence 4589999999999999999999999999999999999999999999999766555 8999999999999
Q ss_pred HhHHHHHHHHhhhcccccccC----chhhHHHHHHHHHHHHhhccCccchhhHHHHhhccCCCccccchhhhhHHHHHHH
Q 001040 1055 CNLTRVLEFCTHEIPQAFLSG----TDTNLRRLTELIVFILNHVTSAADAEFFDLSLRRHGQSLEKVNRGMILAPLVGII 1130 (1178)
Q Consensus 1055 vsL~RvLE~~~~~~P~~fl~~----~~~~l~Rl~ql~~~VLnr~t~~~~~~~f~~~l~~~~~~le~v~~~~ilaa~~GIL 1130 (1178)
|||+|||||+++.+|+||+|+ ++++++|||||++|||||||++ .++|+.++++++|++|+|+|||||+|++|||
T Consensus 242 vsL~RvLEm~it~~Peifld~trpns~~Ll~ri~qllnqvlsrVt~e--~~lf~rvv~~~~~~le~V~hypil~a~~GIl 319 (489)
T KOG4692|consen 242 VSLARVLEMCITAMPEIFLDGTRPNSRRLLERILQLLNQVLSRVTDE--FFLFVRVVRRQGQPLEKVSHYPILAALVGIL 319 (489)
T ss_pred HHHHHHHHHHHHhhhHHHhcCCCCcHHHHHHHHHHHHHHHHHhhccc--cchhHHHHHhhcCChhhhcccchHHHHHHHH
Confidence 999999999999999999997 7899999999999999999998 4589999999999999999999999999999
Q ss_pred HHHhhhccccccCcccchhhhhhcCCCCccccccceeeecccccc
Q 001040 1131 LNLLDASAESECGVQNDVVGVFSSMDCPDTIHCGFQYLLEYNWVS 1175 (1178)
Q Consensus 1131 l~L~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~y~~~~~w~~ 1175 (1178)
||||++++++..++++++...++++|+|||++++||||++|||+.
T Consensus 320 l~Ll~~~~~S~~r~Q~~~~~~~a~l~dP~fq~~~~~ylLg~~~pd 364 (489)
T KOG4692|consen 320 LNLLEASEDSKPRQQHDVIGLFASLDDPDFQYYGFQYLLGYNWPD 364 (489)
T ss_pred HHHHHhCcccCcccchhhhhhheeccCcchHHHHHHHHHhcCCCC
Confidence 999999999999999999999999999999999999999999974
No 2
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.96 E-value=3.2e-29 Score=280.76 Aligned_cols=222 Identities=27% Similarity=0.491 Sum_probs=189.5
Q ss_pred HhhhHhhcCCCCCCCCCCCCccch--------hhHHHHhhhhccccccCCccccccccCcccccCCCCCceEEeCcccCC
Q 001040 46 EQTLEYIFGLPNKSLGPLTCPVDN--------NLIRSIIKNDFSKCYLNSDAVVANRDGIGILENGSGPHIVGLEESSIC 117 (1178)
Q Consensus 46 e~tl~~IF~~~~~~~~~~~G~~d~--------q~v~~~l~~~~~~~~~~~~~~~~~~~gi~i~~~~~gp~~V~LD~~~~~ 117 (1178)
.++|+.|+|..|..+++.+|++.+ |+|++.|++ ++.-..+- .+-..| .|....++..+..
T Consensus 30 aeaiplilgggdvlmaaetgsgktgaf~lpilqiv~etlrd-~~egk~gk---~~~~~g--------a~~~w~mn~~Drg 97 (725)
T KOG0349|consen 30 AEAIPLILGGGDVLMAAETGSGKTGAFCLPILQIVWETLRD-LEEGKAGK---GGMADG--------APREWKMNKQDRG 97 (725)
T ss_pred cccccEEecCCcEEEEeccCCCCccceehhhHHHHHHHHHh-HhhcccCC---CcccCC--------CccccccCccccC
Confidence 578999999999999999999987 889998887 33222221 111122 2445778888888
Q ss_pred CCeEEeCCCcEEEec--CceeeEEeCceee-cCEEEEEEEEEecCeEEEEEecCCCCCCCCCCCCCCCCceeEeCCCccc
Q 001040 118 GDVRIAKLPLLVESL--AMFSSARANVCVW-KGKWMYEVTLETSGVQQLGWATLSCPFTDHKGVGDADDSYAFDGRRVKK 194 (1178)
Q Consensus 118 ~~L~LS~d~L~V~g~--s~~ssVRAn~~V~-sGkwYFEVtI~s~G~vrIGwAt~~~~l~~~~gVG~d~~SyGYdG~~G~~ 194 (1178)
..+.|..|+|..++. +.|-++|||.++. +|||||||++.+.|..||||+|-..+++ +|.+.+++||.|.+.+.
T Consensus 98 ~alaI~~dGL~CqSre~KeWhGcRaT~Gl~gkGK~YyEvtitd~GLCRVGWsT~qasLd----lGt~~~gFGfGGTGkKS 173 (725)
T KOG0349|consen 98 LALAIDEDGLACQSREKKEWHGCRATAGLYGKGKYYYEVTITDKGLCRVGWSTLQASLD----LGTGLDGFGFGGTGKKS 173 (725)
T ss_pred ceeeEcCCccccchhHHhhhhccccccccccCceEEEEEEeccCceeeechhhcccccc----cCccccccccCccCccc
Confidence 889999999999885 6999999999997 9999999999999999999999999886 79999999999999888
Q ss_pred ccCCcccCCCccCCCCEEEEEEeCCCceEEEEECCeeeeeeeecccccCCCCcEEEEEEeCCCCEEEEecCCCCCccCC-
Q 001040 195 WNKEAEPYGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFGYYPAVSLSQGERCVLNFGARPFKYPI- 273 (1178)
Q Consensus 195 ~h~~~~~YG~~f~~GDVIGCgIDld~GtI~FtkNG~~LGvAFe~I~~~~~~~~lYPAVSl~~g~~V~vNFG~~PFkYpp- 273 (1178)
.|.....||.+|+-.|||||.+|+++++|+|++||+.+|.||+.... .....+||||-+. +..+.+|||..||+|||
T Consensus 174 ~nkqFDdYGe~Ft~~DvIGCyLDld~~~v~fsKNG~~lg~AF~ip~~-~kn~~lfPAvvlk-Nael~fNFG~~~FKfpPg 251 (725)
T KOG0349|consen 174 TNKQFDDYGEPFTLNDVIGCYLDLDSRTVWFSKNGEQLGAAFSIPVK-YKNSNLFPAVVLK-NAELSFNFGSQPFKFPPG 251 (725)
T ss_pred cccccccccCcccccceeeEEEeccCceEEEecCccccceeEEcChh-hcccccchheeec-cceEEEecCCCccccCCC
Confidence 88888999999999999999999999999999999999999986543 4567899999764 57899999999999988
Q ss_pred CCcccc-ccCCCc
Q 001040 274 NCYLPL-QESPPV 285 (1178)
Q Consensus 274 ~Gf~PL-~~pP~~ 285 (1178)
+||..+ .+||..
T Consensus 252 ngFva~s~Ap~e~ 264 (725)
T KOG0349|consen 252 NGFVAVSDAPNEH 264 (725)
T ss_pred CceEEeecCCccc
Confidence 799998 566653
No 3
>KOG2626 consensus Histone H3 (Lys4) methyltransferase complex, subunit CPS60/ASH2/BRE2 [Chromatin structure and dynamics; Transcription]
Probab=99.94 E-value=3.4e-27 Score=271.38 Aligned_cols=195 Identities=27% Similarity=0.447 Sum_probs=171.9
Q ss_pred CCCceEEeCcccCCCCeEEeCCCcEEEecCceeeEEeCceeecCEEEEEEEEEec---CeEEEEEecCCCCCCCCCCCCC
Q 001040 104 SGPHIVGLEESSICGDVRIAKLPLLVESLAMFSSARANVCVWKGKWMYEVTLETS---GVQQLGWATLSCPFTDHKGVGD 180 (1178)
Q Consensus 104 ~gp~~V~LD~~~~~~~L~LS~d~L~V~g~s~~ssVRAn~~V~sGkwYFEVtI~s~---G~vrIGwAt~~~~l~~~~gVG~ 180 (1178)
..+.+|.+...+....++|++|.|++.+.++|+.|||+++|..|.|||||+|+.. +++|+||++...++ +.+||+
T Consensus 288 ~~~~tv~l~~hdrA~ql~Is~drlt~tgeKGy~MvRAshgv~~G~WYFEI~vd~~pd~~a~RlGwsq~~g~L--qApvGY 365 (544)
T KOG2626|consen 288 SPMDTVNLSWHDRAEQLKISEDRLTATGEKGYRMVRASHGVLEGAWYFEIKVDEMPDDAAIRLGWSQLYGNL--QAPVGY 365 (544)
T ss_pred CchhhhhhhhhcccccccccccceeeecccceeeeeecccccccceeEEEEeecCCCccceeeecccccccc--cccccc
Confidence 3445899999999999999999999999999999999999999999999999863 58999999999887 468999
Q ss_pred CCCceeEeCCCcccccCC-cccCCCccCCCCEEEEEEeCCC---------------------------------------
Q 001040 181 ADDSYAFDGRRVKKWNKE-AEPYGQSWVAGDIIGCCIDLDS--------------------------------------- 220 (1178)
Q Consensus 181 d~~SyGYdG~~G~~~h~~-~~~YG~~f~~GDVIGCgIDld~--------------------------------------- 220 (1178)
|..||++++.+|+++|.. ++.|...|+.||||||.|++..
T Consensus 366 dkfsY~wRdk~GtKfh~s~gk~Y~~gf~qGDvLGf~I~LP~~~~~~~~lp~~~kdk~lI~yK~~lyfe~~d~v~k~~k~l 445 (544)
T KOG2626|consen 366 DKFSYGWRDKKGTKFHESLGKHYSDGFGQGDVLGFYINLPKDLSPEKYLPLTHKDKFLIKYKGHLYFEDPDNVAKIEKTL 445 (544)
T ss_pred ccccccccccCCcchhhhhhhhhhhhccCCceEEEEEecCCcccccccCCccccccceeeeeeeeEEEccchhhhhhhcc
Confidence 999999999999999876 6789999999999999999863
Q ss_pred -----ceEEEEECCeeeeeeeecccccCCCCcEEEEEEeCCCCEEEEecCCCCCccCCC--CccccccCCCc-hhHHHHH
Q 001040 221 -----DEISFYRNGVSLGVAFSGIRKMGPGFGYYPAVSLSQGERCVLNFGARPFKYPIN--CYLPLQESPPV-NVFATQL 292 (1178)
Q Consensus 221 -----GtI~FtkNG~~LGvAFe~I~~~~~~~~lYPAVSl~~g~~V~vNFG~~PFkYpp~--Gf~PL~~pP~~-~~~a~~l 292 (1178)
.+|.|+|||+.+|+||+||.. .+.|||+||+++++.+++|||+. |+|||. |+++. ++. ++..++.
T Consensus 446 ~~~pgS~I~f~KNG~~qG~Ay~ni~~---~G~YyPaIS~yks~tv~~nfGP~-F~~~p~~lg~~~~---~m~~~~~eqi~ 518 (544)
T KOG2626|consen 446 KIKPGSEIEFFKNGVSQGVAYENIYK---AGAYYPAISIYKSCTVKFNFGPQ-FRYPPCVLGNRAV---GMSDRYKEQIA 518 (544)
T ss_pred ccCCCceEEEeecccchhhhhhhhhc---cccccceeeecccceEEEecccc-ccCCccccCCCcc---cccchhhhhHH
Confidence 689999999999999999973 25899999999999999999986 999884 56653 233 4678899
Q ss_pred HHHHHHHhcCchhhh
Q 001040 293 LQCLSRLLGMDKAER 307 (1178)
Q Consensus 293 l~~~~~ll~~~~~e~ 307 (1178)
+++++++|++.+.|.
T Consensus 519 E~~l~DiLy~ve~e~ 533 (544)
T KOG2626|consen 519 EDTLADILYEVEQEV 533 (544)
T ss_pred HHHHHHHHHHhhhhh
Confidence 999999999864433
No 4
>smart00449 SPRY Domain in SPla and the RYanodine Receptor. Domain of unknown function. Distant homologues are domains in butyrophilin/marenostrin/pyrin homologues.
Probab=99.86 E-value=5.8e-21 Score=184.00 Aligned_cols=118 Identities=38% Similarity=0.650 Sum_probs=104.6
Q ss_pred cCEEEEEEEEEecCeEEEEEecCCCCCCCCCCCCCCCCceeEeCCCcccccCCc-ccCCCccCC-CCEEEEEEeCCCceE
Q 001040 146 KGKWMYEVTLETSGVQQLGWATLSCPFTDHKGVGDADDSYAFDGRRVKKWNKEA-EPYGQSWVA-GDIIGCCIDLDSDEI 223 (1178)
Q Consensus 146 sGkwYFEVtI~s~G~vrIGwAt~~~~l~~~~gVG~d~~SyGYdG~~G~~~h~~~-~~YG~~f~~-GDVIGCgIDld~GtI 223 (1178)
+|+|||||+|...+.++|||++..++.+....+|++.+||+|+++++..|++.. ..|+.+++. ||+|||++|+++|+|
T Consensus 1 sG~~YwEV~v~~~~~~~vGv~~~~~~r~~~~~~G~~~~sw~~~~~~g~~~~~~~~~~~~~~~~~~gd~iGv~lD~~~g~l 80 (122)
T smart00449 1 SGRHYFEVEIFDGGHWRVGVATKSVPRGYFALLGEDKGSWGYDGDGGKKYHNSTGPEYGLPLQEPGDVIGCFLDLEAGTI 80 (122)
T ss_pred CCcEEEEEEEcCCCeEEEEEEcCccCCCccccCCCCCCEEEEEcCCCcEEeCCCCCccCccccCCCCEEEEEEECCCCEE
Confidence 599999999999999999999999875445579999999999999988887653 578889986 999999999999999
Q ss_pred EEEECCeee-eeeeecccccCCCCcEEEEEEeCCCCEEEEecCC
Q 001040 224 SFYRNGVSL-GVAFSGIRKMGPGFGYYPAVSLSQGERCVLNFGA 266 (1178)
Q Consensus 224 ~FtkNG~~L-GvAFe~I~~~~~~~~lYPAVSl~~g~~V~vNFG~ 266 (1178)
+||+||+.+ +.+|.++. ..+++||+|++..+..+++|||+
T Consensus 81 ~F~~ng~~~~~~~f~~~~---~~~~l~P~~~~~~~~~~~~n~g~ 121 (122)
T smart00449 81 SFYKNGKYLHGLAFFDVK---FSGPLYPAVSLGSGCSVRLNFGP 121 (122)
T ss_pred EEEECCCEeeeEEEeccC---CCCcEeeEEEcCCCCEEEEEecC
Confidence 999999999 79998753 34699999999887899999996
No 5
>PF00622 SPRY: SPRY domain; InterPro: IPR003877 The SPRY domain is of unknown function. Distant homologues are domains in butyrophilin/marenostrin/pyrin []. Ca2+-release from the sarcoplasmic or endoplasmic reticulum, the intracellular Ca2+ store, is mediated by the ryanodine receptor (RyR) and/or the inositol trisphosphate receptor (IP3R).; GO: 0005515 protein binding; PDB: 2V24_A 3EK9_A 2AFJ_A 2IWG_E 3EMW_A 2WL1_A 3TOJ_B 2VOK_A 2VOL_B 2FNJ_A ....
Probab=99.86 E-value=4.7e-21 Score=183.92 Aligned_cols=120 Identities=42% Similarity=0.669 Sum_probs=102.3
Q ss_pred cCEEEEEEEEEecCeEEEEEecCCCC-CCCCCCCCCCCCceeEeCCCcccccCC-cccCCCccCC-CCEEEEEEeCCCce
Q 001040 146 KGKWMYEVTLETSGVQQLGWATLSCP-FTDHKGVGDADDSYAFDGRRVKKWNKE-AEPYGQSWVA-GDIIGCCIDLDSDE 222 (1178)
Q Consensus 146 sGkwYFEVtI~s~G~vrIGwAt~~~~-l~~~~gVG~d~~SyGYdG~~G~~~h~~-~~~YG~~f~~-GDVIGCgIDld~Gt 222 (1178)
+|+|||||+|.+.+.+.|||++.... ......+|++..||+|++.++..|++. .+.++.++.. ||||||++|+++++
T Consensus 1 sG~~YwEV~v~~~~~~~iGv~~~~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~dvIG~~lD~~~g~ 80 (124)
T PF00622_consen 1 SGKHYWEVEVDSGGSISIGVATSSASVSGDENLSGYDPFSWGFHGDGGKKYHGGTSEETGSPFQEPGDVIGCGLDLDNGE 80 (124)
T ss_dssp SSEEEEEEEETGGCTEEEEEEETTSEESSSTS-TTSSTTEEEEETTTTTEEESTSSSECSCTSSTTTSEEEEEEETTTTE
T ss_pred CcCEEEEEEEecCcCEEEEEeECccccCCccccCCccccceeeeccccccceeecccccccccccCCcEEEEEEeecccE
Confidence 69999999999988899999999981 122347899999999999997777654 5778899998 99999999999999
Q ss_pred EEEEECCeeee-eeeecccccCCCCcEEEEEEeCCCCEEEEecCCCC
Q 001040 223 ISFYRNGVSLG-VAFSGIRKMGPGFGYYPAVSLSQGERCVLNFGARP 268 (1178)
Q Consensus 223 I~FtkNG~~LG-vAFe~I~~~~~~~~lYPAVSl~~g~~V~vNFG~~P 268 (1178)
|+||+||+.++ .+|+++. ...++||+|++..++++++|||++|
T Consensus 81 l~F~~ng~~~~~~~f~~~~---~~~~l~P~v~~~~~~~~~~n~g~~~ 124 (124)
T PF00622_consen 81 LSFYKNGKFLGIYAFTDID---FSEPLYPAVSLGGGQSVELNFGQRP 124 (124)
T ss_dssp EEEEETTEEEEEEEEESCT---TSSSBEEEEEEESTSEEEEEEEC--
T ss_pred EEEEECCccceeEEEECCC---CCCcEEEEEEecCCCEEEEEeCCCC
Confidence 99999999999 8898664 2369999999988899999999986
No 6
>KOG4030 consensus Uncharacterized conserved protein, contains SPRY domain [Function unknown]
Probab=99.70 E-value=2.4e-16 Score=158.23 Aligned_cols=160 Identities=24% Similarity=0.302 Sum_probs=136.8
Q ss_pred ceEEeCcccCCCCeEEeCCCcEEEecCceeeEEeCceeecCEEEEEEEEEecCeEEEEEecCCCCCCCCCCCCCCCCcee
Q 001040 107 HIVGLEESSICGDVRIAKLPLLVESLAMFSSARANVCVWKGKWMYEVTLETSGVQQLGWATLSCPFTDHKGVGDADDSYA 186 (1178)
Q Consensus 107 ~~V~LD~~~~~~~L~LS~d~L~V~g~s~~ssVRAn~~V~sGkwYFEVtI~s~G~vrIGwAt~~~~l~~~~gVG~d~~SyG 186 (1178)
+.|.||..+..+++.|-+.++.++|. +++.|+.++...|-||||+|.+.|.|.||+++...++++. +.|.|..||+
T Consensus 27 P~V~LD~~hMG~dVvilk~g~RicGt---GG~lAtaPlvQnKsYFevkiQ~tG~WgiGlat~q~~l~~~-p~g~d~~sw~ 102 (197)
T KOG4030|consen 27 PTVRLDVGHMGKDVVILKEGERICGT---GGALATAPLVQNKSYFEVKIQQTGTWGIGLATKQSPLDKV-PGGCDEKSWG 102 (197)
T ss_pred CcEEeehhccCCcEEEEecCcEEecc---CceeeeeeeecccceEEEEEeecceeeeeeeeccCccccC-CCCCcceeEE
Confidence 89999999999999999999999876 7889999999999999999999999999999999999864 6789999999
Q ss_pred EeCCCcccccCCccc---CCCccCCCCEEEEEEeCCCceEEEEECCeeeeeeeecccccCCCCcEEEEEEeCCCCEEEEe
Q 001040 187 FDGRRVKKWNKEAEP---YGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFGYYPAVSLSQGERCVLN 263 (1178)
Q Consensus 187 YdG~~G~~~h~~~~~---YG~~f~~GDVIGCgIDld~GtI~FtkNG~~LGvAFe~I~~~~~~~~lYPAVSl~~g~~V~vN 263 (1178)
.++++...+++.... -..--..|||||+.+| .=++-||.||+.+...|++++ +++||.|.+..+..+.+.
T Consensus 103 ~r~dga~~hnnee~~r~pa~~~p~EGDvVGvayD--HVELnfY~NGKn~e~p~~gvR-----G~vyPvvYVddsAILD~~ 175 (197)
T KOG4030|consen 103 IRDDGAIAHNNEEVARMPATVFPEEGDVVGVAYD--HVELNFYVNGKNVEDPITGVR-----GPVYPVVYVDDSAILDLK 175 (197)
T ss_pred EccCCchhcccHHHhcCccccCCccCcEEEEEee--eEEEEEEEcCceecccccccc-----cceeeEEEeCCceEEEEE
Confidence 998876554443211 1112368999999997 678999999999999999886 699999999999888888
Q ss_pred cCCCCCcc-CCCCcccc
Q 001040 264 FGARPFKY-PINCYLPL 279 (1178)
Q Consensus 264 FG~~PFkY-pp~Gf~PL 279 (1178)
|- .|.. ||+||..+
T Consensus 176 f~--nF~h~PPpGFe~I 190 (197)
T KOG4030|consen 176 FK--NFTHAPPPGFEEI 190 (197)
T ss_pred ec--ccccCCCCChhhe
Confidence 86 3777 88999876
No 7
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=99.64 E-value=4.1e-16 Score=186.67 Aligned_cols=135 Identities=34% Similarity=0.714 Sum_probs=120.6
Q ss_pred eCceeecCEEEEEEEEEecCeEEEEEecCCCCCCCCCCCCCCCCceeEeCCCcccccCCcccCCCccCCCCEEEEEEeCC
Q 001040 140 ANVCVWKGKWMYEVTLETSGVQQLGWATLSCPFTDHKGVGDADDSYAFDGRRVKKWNKEAEPYGQSWVAGDIIGCCIDLD 219 (1178)
Q Consensus 140 An~~V~sGkwYFEVtI~s~G~vrIGwAt~~~~l~~~~gVG~d~~SyGYdG~~G~~~h~~~~~YG~~f~~GDVIGCgIDld 219 (1178)
-+++|..|+||||.+..+.|.|+|||++..|..+.+ +|.|...++|+|.+++.||.+.+.||.+|.+||||||.||++
T Consensus 1099 ksyavkagkwyfefe~vt~gdmrvgwarpgc~pd~e--lgadd~af~fdg~k~qrwhqg~~~~grswq~gdvvgcmi~l~ 1176 (5019)
T KOG2243|consen 1099 KSYAVKAGKWYFEFETVTAGDMRVGWARPGCQPDQE--LGADDQAFAFDGFKAQRWHQGNEHFGRSWQAGDVVGCMIDLD 1176 (5019)
T ss_pred hhheeeccceEEEEEEeeccceeecccCCCCCcchh--hCCccceeeeccchhhhhhccccccccccCCCCeEEEEEecc
Confidence 457889999999999999999999999999988764 899999999999999999999999999999999999999999
Q ss_pred CceEEEEECCeee------eeeeecccccCCCCcEEEEEEeCCCCEEEEecCCC--CCccC-----CCCcccc
Q 001040 220 SDEISFYRNGVSL------GVAFSGIRKMGPGFGYYPAVSLSQGERCVLNFGAR--PFKYP-----INCYLPL 279 (1178)
Q Consensus 220 ~GtI~FtkNG~~L------GvAFe~I~~~~~~~~lYPAVSl~~g~~V~vNFG~~--PFkYp-----p~Gf~PL 279 (1178)
..++.||+||+.+ ..||.+. ..+.++.|..+++-.+.-++|||.+ -|+|- .+||.|+
T Consensus 1177 d~sm~ftlngeili~~~gselaf~d~---di~~gfipic~lg~aqigrmn~g~d~st~k~~ticglqeg~epf 1246 (5019)
T KOG2243|consen 1177 DASMIFTLNGEILIDDKGSELAFADF---DIEDGFIPICCLGLAQIGRMNFGKDASTFKFFTICGLQEGFEPF 1246 (5019)
T ss_pred cceEEEEEcCeEEEcCCCCeeeeccc---cccCCceeeeehhhHhhcccccCCcccceeeeeeecccccCccc
Confidence 9999999999988 2477764 4567899999998767778999987 58883 4899998
No 8
>KOG2242 consensus Scaffold/matrix specific factor hnRNP-U/SAF-A, contains SPRY domain [RNA processing and modification]
Probab=99.62 E-value=5.9e-17 Score=193.74 Aligned_cols=546 Identities=18% Similarity=0.114 Sum_probs=368.7
Q ss_pred CCceeEeCCCcccccCCcccCCCccCCCCEEEEEEeCCCceEEEEECCeeeeeeeecccccCCCCcEEEEEEeCCCCEEE
Q 001040 182 DDSYAFDGRRVKKWNKEAEPYGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFGYYPAVSLSQGERCV 261 (1178)
Q Consensus 182 ~~SyGYdG~~G~~~h~~~~~YG~~f~~GDVIGCgIDld~GtI~FtkNG~~LGvAFe~I~~~~~~~~lYPAVSl~~g~~V~ 261 (1178)
..+|.+++....+|+....+++..|.. |+|+|+++..--.+ ++.|+...+.+|......+++...+|+++...+..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~c~~~-~~~~~~~~~~~~~~e~~~~~~~~~r~a~~~~~~~~~~ 85 (558)
T KOG2242|consen 8 GFSYFEDGEDRRAWSPQPPAEEDEWHF-DTIVCIDTYNCDLH-KYRRDRSSGYALTKERFAGPWDGARAAYSVSRGEVCF 85 (558)
T ss_pred ccccccccchhhhccCCCCcccccccc-ceeeechhhhhhhh-hcccccccccccchhhccccCcccceeeeecCCcchh
Confidence 788999999999999999999999999 99999999988888 9999999999998766567888999999999999999
Q ss_pred EecCCCCCccCCCCccccccCCCchhHHHHHHHHHHHHhcCchhhhh-hhhhhhhhhcccccccccccchHHHHHHHHHh
Q 001040 262 LNFGARPFKYPINCYLPLQESPPVNVFATQLLQCLSRLLGMDKAERS-SVEKSRRLKRFVSLEKIFNPVSHGICEEFFSL 340 (1178)
Q Consensus 262 vNFG~~PFkYpp~Gf~PL~~pP~~~~~a~~ll~~~~~ll~~~~~e~~-l~~~~~~~~~~~~l~~~~~~~~~~i~~~~~pl 340 (1178)
.|+++.||.++ +|.+.+..|......+-|..+...+.+-...-+. ..++....-++..+.+.|.....-.|..+++.
T Consensus 86 ~~~~~e~~~~~--~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~f~e~~~i~c~~~~~~ 163 (558)
T KOG2242|consen 86 EMRINEPEEVP--HFQPLEPDPHDVRIGWSLDSIRTLLGDEPFSYGYSETGKKSCNSEVEKYGEKFPENDVIGCFADFEI 163 (558)
T ss_pred hcccccccccC--CCCccccccccccccccchhhhhccccccccccccccccchhhHHHHHHHhhcccccccchhhcccc
Confidence 99999999998 9999977776655555667666666654311111 11111111112223445555555568888888
Q ss_pred hhhcccccchhhHhHHHHHHHHHhcCCCC-CCCCcHHHHHHHHHhhhcchhHHHHHHHHHhccCcccccccccCCCCCCC
Q 001040 341 LEADARIIEYVGWGILLSFMMEVFGLQVP-HDYSSLDRVVDVFLQFQGSRSIFEHIIQALSCGCKTASMVLTECPYSGSY 419 (1178)
Q Consensus 341 l~~~~~~~~Y~v~~~l~~fl~~~~~~~~p-~~~~~~~~~Ldll~~~~e~~~~l~~l~~~L~~~~r~~p~~l~~~~~~~~~ 419 (1178)
++......++-.....+.|+++....+.+ +..+.+.....++..|-+.+...+.+-+.... -+..|+. ||.+..+.
T Consensus 164 ~d~~~l~~~k~~~~~~~~~~l~~~~~~~~~~~p~vl~~~~~ve~~f~~~~ag~~~v~~~~~~-i~~~~~~--~~~~~~~~ 240 (558)
T KOG2242|consen 164 LDEVELSYEKNGQDLGESFLLSKEDLGGQALYPHVLRKNCAVEGNFGQKAAGYEPVKEEYTF-IQNYPLE--ERLRGPVG 240 (558)
T ss_pred cccCcchhhhccchhhhhhcchhhhccCcccCcccccCcceeccccccccccccccchhhhh-hhhcchh--hcccCCCC
Confidence 88887788888899999999998877665 34456667778888888877555555444433 2223433 68888899
Q ss_pred chhHHHHHhhchHHHHHHHhhccchhhhhhcceeccCCCchhhhhccCccccCCCCCCcchhhhhhHHhHHHHHHHHHHH
Q 001040 420 PYLALACHILRREELMVLWWNSLDFEFIFEGFLSRKNPNRQDLQCMIPSVWWPGSCEDISYESSMMLTTTALSEAVSKIE 499 (1178)
Q Consensus 420 ~~L~l~~~~l~r~~~~~~w~~~~~f~~~~~~Fl~~k~p~~~~L~~liP~vWwpg~~~~~~~e~~~~~~~~~L~~~i~~ve 499 (1178)
+..+..|+...+.-+...|+.+--++...+++... =+..+....+|.+||.|..+....+.
T Consensus 241 p~~~~~c~~~~~~g~~~~g~~~~~le~~~q~~~~~--~~i~g~~~~~~~~~~~g~~~~~~~~~----------------- 301 (558)
T KOG2242|consen 241 PETKKECEVFMMRGLPGAGKTSWALEPAAQNPEKG--GNILGGNTIMPKMRVVGLEEQTNDAF----------------- 301 (558)
T ss_pred ccccccchhhhcccccccccchhhhhhhhhCcccc--CCccccccccCCcCcccchhhhhccc-----------------
Confidence 99999999999988888888888888888888543 68889999999999999665211111
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHHHhhhccccCCccccc
Q 001040 500 EKHRELCLLVIQFIPPISPPQFPGSVFRTFIQNILLKNRGADRSLPPPGVSSNSVLVSLYTVILHFLSEGFAIGDTCSWL 579 (1178)
Q Consensus 500 ~~q~~l~~lll~~~~~~~p~~~~~~~fr~fl~~~~~knrg~~~~~~pp~~s~~~vl~s~~~~ll~~l~~~~~~~~~~~~~ 579 (1178)
.+-.+++ ..+..+...+.+.|.++++..+.+++ ++.+.+...+..+++.|.....+..+.+.. +
T Consensus 302 -----s~~~~~~-~~~~~~~~~~~~i~~~~~r~~~~d~~----~~s~~~~~r~~~~~~~~~~~~p~~~~~~~d------~ 365 (558)
T KOG2242|consen 302 -----SRGYLIQ-QAGQCLNKLPRDIFLRKKRNYILDQT----NLSSSAQRRKMGLFSQFSRKAPVVCPAFED------L 365 (558)
T ss_pred -----cccchhh-ccccccccchhhhhhhhhhhhhhhcc----ccchhhceecccccccccccCCCcCCchhh------h
Confidence 1111211 12222223445677777777776664 333444445668888888888888777664 7
Q ss_pred cccccCCCcccccccCCcccccccccccccCCcccccccccchhcccccCCCCcchhhhhcccccccccchhhhc-ccCC
Q 001040 580 KRSEKNGCNVGFLHRGGQQSFPIGLFLKNDLLRADISRLGGSFSHLLKSHPVDDQDAEVIRWEEGYMDDEETRVC-HLSE 658 (1178)
Q Consensus 580 ~~~~~~~~~~~~l~~~~~~~~p~~~F~~~~~~~~di~RlGG~lSHL~Kt~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~ 658 (1178)
++-++.-+.+.+++.++...+++..++.++...-..++.|++..|..+.++...+..+..+|...+++..++|-. +...
T Consensus 366 ~s~~~v~~~~~~~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 445 (558)
T KOG2242|consen 366 KSRTIVRTEVEGKDVGETAVLEMNANFTLPGVMDYMDETGDSELLKEEAYGIGDQYSEEARKALPPQKKPNDRRKSNINE 445 (558)
T ss_pred ccccceEeeeecccCCcceEEEEeeeeccCchhhhhhhccccccchhhcccccccHhHHhhhccCcccccccccccCcCc
Confidence 777777777888888777777777655555444445555555555555666666666666777777777654310 0000
Q ss_pred CCCcccCCcchhhhhcccccccccCCCCCCCccCCCccccchhhhccCCCCCccccCCCCCCCCCCCCCCCCCccccchh
Q 001040 659 HKPCCCSSYDAEFVRSLKYPVRNATKGSRGHCSSVPERSAHVAAECSTGSLNDEIADKPSTSDQSESDFGYHPVRHTMTV 738 (1178)
Q Consensus 659 ~~p~~cs~~~~~~~r~~~~~s~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~s~~~~~~~~g~~p~~~~~~~ 738 (1178)
..+. ....--+..++...|..++.++- .++.++....+-.....|+..++.+.+++..|...+..-
T Consensus 446 ------------~~~~-~~~~g~~~~~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (558)
T KOG2242|consen 446 ------------TDTQ-QQRRGGTANGSQKRGGFNMSGGQ-LGAPGNRGGNNRRDDNEPSRWGSSDMSFQQCPPPFQAGP 511 (558)
T ss_pred ------------ccch-hhhccccccCCccceeeecccCC-CCCCccccccccCCCCCCCccCCCCcccccCccccCCCC
Confidence 0000 00000111222223333333332 233333333333456778889999999999877644433
Q ss_pred ccccccchhhhhHHHHHHHHHHHHHhhcchhhHHHhhHhhhHHHHHH
Q 001040 739 LRESNMSAATLKEEELLDALLLLYHIGLAPNFKQASYYMSHQSQSIS 785 (1178)
Q Consensus 739 ~~~~~~~~~~~~~~elLD~~~~lYhl~~~~~~~~a~~~~~~~~~~~~ 785 (1178)
. ++.+....+.....|.+-.++|+-+.++|+.+++.+.+.++.+.
T Consensus 512 ~--~~~~~~~~~~~~~~~~~~~~n~~~~~~~f~~~~~~~~~~~~~~~ 556 (558)
T KOG2242|consen 512 F--QPPPGLKVPPFSYSDALGPPNRIIYAPNFRRPSYERAHTTLSQS 556 (558)
T ss_pred C--CCCCcCCCCccccccccCcccchhcccccccCcccccccccccc
Confidence 2 22244445567888999999999999999999999999887664
No 9
>PF10408 Ufd2P_core: Ubiquitin elongating factor core; InterPro: IPR019474 This entry represents the most conserved part of the core region of ubiquitin conjugation factor E4 (or Ub elongating factor, or Ufd2P), running from helix alpha-11 to alpha-38. It consists of 31 helices of variable length connected by loops of variable size forming a compact unit; the helical packing pattern of the compact unit consists of five structural repeats that resemble tandem Armadillo (ARM) repeats. This domain is involved in ubiquitination as it binds Cdc48p and escorts ubiquitinated proteins from Cdc48p to the proteasome for degradation. The core is structurally similar to the nuclear transporter protein importin-alpha. The core is associated with the U-box at the C terminus, (IPR003613 from INTERPRO), which has ligase activity. Ubiquitin conjugation factor E4 is involved in N-terminal ubiquitin fusion degradation proteolytic pathway (UFD pathway). E4 binds to the ubiquitin moieties of preformed conjugates and catalyses ubiquitin chain assembly in conjunction with E1, E2, and E3. E4 appears to influence the formation and topology of the multi-Ub chain as it enhances ubiquitination at 'Lys-48' but not at 'Lys-29' of the N-terminal Ub moiety.; GO: 0034450 ubiquitin-ubiquitin ligase activity, 0006511 ubiquitin-dependent protein catabolic process, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 2KRE_A 3M63_A 2QIZ_A 2QJ0_A 3M62_A.
Probab=99.53 E-value=7.3e-12 Score=153.43 Aligned_cols=342 Identities=24% Similarity=0.372 Sum_probs=230.1
Q ss_pred HHHHHHHHHHHhhcchhhHHHhhHhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhhc
Q 001040 753 ELLDALLLLYHIGLAPNFKQASYYMSHQSQSISLLEETDKQIRERACSEQLKRLKEARNNYREEVIDCVRHCAWYRISLF 832 (1178)
Q Consensus 753 elLD~~~~lYhl~~~~~~~~a~~~~~~~~~~~~~L~et~~~ir~~~~~e~~~~l~~~~~vf~e~l~~~aR~~aW~r~~~~ 832 (1178)
|+.=-.+-.=|+|..+...+..... ..|.+.++.+.+-...++++++++ ++-...++..=++++++
T Consensus 176 e~FFLT~~a~hlg~~~~~~~~~~~~-------r~l~~lq~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~e~~L~ 241 (629)
T PF10408_consen 176 ECFFLTLRALHLGLLPAIQRYKRLL-------RELRRLQRELEELEASAQLKRLKE-------QLDKLMSEKLSLEAVLL 241 (629)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHTHH-------HHHHHHHHHHHHHTT-HHHHHHHH-------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH-------HHHHHHHHHHHHHHhHHHHHHHHH-------HHHHHHHHHHHHHHHhc
Confidence 4444455556777766554443333 333334333333111145444444 33333333333578888
Q ss_pred chhhHhhhhh----hhHHHHHHHH--h-hc-----------cCCcccccchHHHHHHHHHhhhhcccCCCCCCCchhHHH
Q 001040 833 SRWKQRGMYA----TCVWVVQLLL--V-LS-----------KVDSVFIYIPEFYLEALVDCFHVLRKSDPPFVPSTIFIK 894 (1178)
Q Consensus 833 s~~kq~~l~~----~~~Wl~~~l~--~-~s-----------~~~~lF~fvPefYle~l~~~~h~lr~~~~p~~~~~~~~~ 894 (1178)
.+.-+..... ++.|+++++- . .. ..-..|+++||||||.++|.++-+++.. ..+..+..
T Consensus 242 ~p~~~~~~~~F~~~~~~wL~~~~~~~~~~~~~~~~~~Plp~~~p~~f~~lPE~~iedi~d~~~f~~~~~---~~~~~l~~ 318 (629)
T PF10408_consen 242 DPDFLSRCLQFYNFVAQWLLRLADPSNQYPENKPPKLPLPEEPPPQFAYLPEFFIEDIVDFLLFLRRFN---NSPDLLSS 318 (629)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHSTT--TTS-S---S-SS----TTGGGSBTHHHHHHHHHHHHHTTST---T-TTTT-T
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcccccccccCCcCCCCCCCCChHHHhCCHHHHHHHHHHHHHHHHhc---CChhhhhh
Confidence 8777666543 7889999771 0 01 1135699999999999999999998863 12334456
Q ss_pred hhHHHHHHHHHHhhcCC-cccCcchhHHHHHHHHHHhccHH-HHH-----HHhccHHHHHhhHHHhhhccC--------C
Q 001040 895 QGLASFVTFVVTHFNDP-RISSADLRDLLLQSISVLVQYKD-YLA-----AFESNEAATLRLPKALISAFD--------N 959 (1178)
Q Consensus 895 ~~l~~~~~fL~~hf~D~-RIv~~d~kd~llq~l~~l~~~~~-~l~-----a~E~~~~a~~~~v~~ll~~~d--------~ 959 (1178)
..+..+++|+......| .|-||.+|--|+..|..++.... ..+ .|++++-++.+|+++||+-|- +
T Consensus 319 ~~~~~l~~f~i~fm~s~~~ikNP~LraklvevL~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~sLm~~yidvE~Tg~~~ 398 (629)
T PF10408_consen 319 QDLDELVTFCITFMGSPEYIKNPHLRAKLVEVLFSLLPPDRDGRRGVLGSLFESHPLAQEHLVPSLMKFYIDVEKTGAST 398 (629)
T ss_dssp -THHHHHHHHHHHHH-TTS---HHHHHHHHHHHHHCCS--TTS---TTHHHHHH-HHHHCCHHHHHHHHHHHCCCT-SSS
T ss_pred hhHHHHHHHHHHHhCChhhcCCHHHHHHHHHHHHHhcCcccccccccHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 67788889999998888 89999999999999999888777 333 999999999999999997663 1
Q ss_pred CCc------chhhHHHHHhhcCCCccccCCCCCCCchHHHHHHHHHHHhcCCcchHHHHHHHhhhhchhHHHHHHHHHHH
Q 001040 960 RSW------IPVTNILLRLCKGHGFGSSKHGESSSSSVIFQRLLREACINDEGLFSTFLNRLFNTLSWTMTEFSISIREM 1033 (1178)
Q Consensus 960 r~W------~~~~~iLlR~~~G~GF~~~k~~~~~~~S~~fQ~~l~e~l~~~~~~~~~FLn~~ln~LNWa~sEF~~~~qEi 1033 (1178)
-++ .+..-||--+|+ ++.+++.+.+...++++++..|.|-++|-.+|-+-|=...+++|
T Consensus 399 qfydKFn~R~~i~~il~~lw~---------------~~~~r~~~~~~~~~~~~~F~rFvn~liND~~~llDE~l~~L~~I 463 (629)
T PF10408_consen 399 QFYDKFNIRYHISQILKYLWK---------------NPEYREQFIKEAKENPPLFVRFVNMLINDTTFLLDESLSKLKEI 463 (629)
T ss_dssp SSTCHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhcccchhhHHHHHHHHcC---------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 133456666664 67788899999999999999999999999999999999998888
Q ss_pred Hhhh----cc--------hhh---------hhhhhhhhhHhHHhHHHHHHHHhhhcccccccCchhhHHHHHHHHHHHHh
Q 001040 1034 QEKY----QV--------SEF---------QQKKCCVIFDLSCNLTRVLEFCTHEIPQAFLSGTDTNLRRLTELIVFILN 1092 (1178)
Q Consensus 1034 q~~~----~v--------~~~---------qqr~C~~~FeLsvsL~RvLE~~~~~~P~~fl~~~~~~l~Rl~ql~~~VLn 1092 (1178)
++.. +. +++ .+|.|.--+.|+-.-++.|+.+|..+|++|+ .+...-||+..++..|.
T Consensus 464 ~~~q~~~~d~~~w~~~~~~~r~~~~~~l~~~e~~~rs~~~l~~~t~~~l~~lt~~~~~~Fl--~~elv~RlA~MLn~~L~ 541 (629)
T PF10408_consen 464 KELQEEMADQSEWNALSQEERQEKESQLEQAERQARSYLQLANETLKMLNYLTSEIPEPFL--RPELVDRLAAMLNYNLD 541 (629)
T ss_dssp HHHHHHHHTSS---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-GGGGC--SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhh--hHHHHHHHHHHHHHHHH
Confidence 8821 10 111 1267999999999999999999999999999 35566999999999999
Q ss_pred hccCccchhhHHHHhhccCCCccccc--hhhhhHHHHHHHHHHhh
Q 001040 1093 HVTSAADAEFFDLSLRRHGQSLEKVN--RGMILAPLVGIILNLLD 1135 (1178)
Q Consensus 1093 r~t~~~~~~~f~~~l~~~~~~le~v~--~~~ilaa~~GILl~L~~ 1135 (1178)
+..-+. |. +.+++ +.|+-+ =--+|.-++-|-++|.+
T Consensus 542 ~L~Gpk-~~--~LkVk----~~~~y~F~P~~ll~~i~~iy~~l~~ 579 (629)
T PF10408_consen 542 QLVGPK-CS--ELKVK----NPEKYGFDPKELLSQIVDIYLNLSD 579 (629)
T ss_dssp HHHSHH-HH--T---S----SGGGGT--HHHHHHHHHHHHHHCTT
T ss_pred HHcCCc-hh--cccCC----ChhhcCCcHHHHHHHHHHHHhhcCC
Confidence 998653 22 22333 334333 34588899999999864
No 10
>KOG3953 consensus SOCS box protein SSB-1, contains SPRY domain [General function prediction only]
Probab=99.39 E-value=3.3e-12 Score=136.52 Aligned_cols=164 Identities=22% Similarity=0.271 Sum_probs=130.8
Q ss_pred EEeCcccCCCCeEEeCCC-cEEEecC---ceeeEEeCceeecCEEEEEEEEEe--cC-eEEEEEecCCCCCCC---CCCC
Q 001040 109 VGLEESSICGDVRIAKLP-LLVESLA---MFSSARANVCVWKGKWMYEVTLET--SG-VQQLGWATLSCPFTD---HKGV 178 (1178)
Q Consensus 109 V~LD~~~~~~~L~LS~d~-L~V~g~s---~~ssVRAn~~V~sGkwYFEVtI~s--~G-~vrIGwAt~~~~l~~---~~gV 178 (1178)
-.+++.+++.++.+-.++ +++..+- ...++|+..+.+.|.++|||.+.. .| +..||++|..+++.. ...+
T Consensus 27 ~~w~~~drs~nv~vk~~~~~tfhrhpvaqstd~~rGk~g~~~g~h~w~i~w~~r~~GT~avVGIaTk~Aplha~gy~aLl 106 (242)
T KOG3953|consen 27 HGWSPSDRSLNVFVKLPDGLTFHRHPVAQSTDGIRGKRGYSRGRHAWEIAWPNRQRGTHAVVGIATKVAPLHAVGYTALL 106 (242)
T ss_pred hccCcccccceeEEecCCcceEEecCCccccccccceeeeccCceEEEEEecCCccCCcceEEEEcccCchhhhHHHHHh
Confidence 456667777666665554 6765432 357889999999999999999987 45 678999999998853 2358
Q ss_pred CCCCCceeEeCCCcccccCCc--ccC-----CCccCCCCEEEEEEeCCCceEEEEECCeeeeeeeecccccCCCCcEEEE
Q 001040 179 GDADDSYAFDGRRVKKWNKEA--EPY-----GQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFGYYPA 251 (1178)
Q Consensus 179 G~d~~SyGYdG~~G~~~h~~~--~~Y-----G~~f~~GDVIGCgIDld~GtI~FtkNG~~LGvAFe~I~~~~~~~~lYPA 251 (1178)
|.|..|||++-.+...||++. ..| .+.+..+|.|+|++|+++|+++|.+||+.+|+||.+.+ +..+||+
T Consensus 107 Gs~~qswGw~l~~~~l~H~g~~~~~yp~~~~~p~~~vp~ri~viLDm~egtl~F~~~~e~LGvAFRgL~----~~~LYP~ 182 (242)
T KOG3953|consen 107 GSNSQSWGWDLGRNVLYHDGQVAGLYPALNRQPKYNVPDRILVILDMIEGTLSFAADGEYLGVAFRGLK----DKKLYPA 182 (242)
T ss_pred CCCCCccceecccceeeecCccccccccccCCchhcCCceEEEEEeeccceEEEEECCeEEeeeecCCC----CCcceee
Confidence 999999999988878888762 123 45789999999999999999999999999999999875 5899999
Q ss_pred EEeC-CCCEEEEecCCCCCccCCCCcccc
Q 001040 252 VSLS-QGERCVLNFGARPFKYPINCYLPL 279 (1178)
Q Consensus 252 VSl~-~g~~V~vNFG~~PFkYpp~Gf~PL 279 (1178)
||.. ..+++++-+=++|+ +++..|+
T Consensus 183 Vsav~g~~Evtm~Ylg~~~---~~e~~~~ 208 (242)
T KOG3953|consen 183 VSAVWGHCEVTMKYLGTLD---VDEPDPL 208 (242)
T ss_pred eeehhcceeEEEEEeCCcC---cCCcccc
Confidence 9985 56788888888876 4555454
No 11
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=99.36 E-value=4.1e-12 Score=143.62 Aligned_cols=153 Identities=18% Similarity=0.256 Sum_probs=126.9
Q ss_pred eEEeCcccCCCCeEEeCCCcEEEecC-ceeeEEeCceeecCEEEEEEEEEe---cCeEEEEEecCCCCCCCCCCCCCCCC
Q 001040 108 IVGLEESSICGDVRIAKLPLLVESLA-MFSSARANVCVWKGKWMYEVTLET---SGVQQLGWATLSCPFTDHKGVGDADD 183 (1178)
Q Consensus 108 ~V~LD~~~~~~~L~LS~d~L~V~g~s-~~ssVRAn~~V~sGkwYFEVtI~s---~G~vrIGwAt~~~~l~~~~gVG~d~~ 183 (1178)
-..|++.....++.+|++.+++.|.+ .++.+.+..++++|.+||||+|+. .+.+.||++......+ ..+|.|.+
T Consensus 534 wfqlt~spsqrdmilsnecatlsgssleyrtilgsiafskgvhywevtidrhdgnsdivigvaqpavnrn--vmlgkdlh 611 (699)
T KOG4367|consen 534 WFQLTPSPSQRDMILSNECATLSGSSLEYRTILGSIAFSKGVHYWEVTIDRHDGNSDIVIGVAQPAVNRN--VMLGKDLH 611 (699)
T ss_pred eeeccCCchhhceeeecccceecccccchheeeeecccccceeEEEEEEeccCCCCCceEEecchhhhhc--eeeccccc
Confidence 34567777788999999999999876 899999999999999999999985 2468999999877554 46999999
Q ss_pred ceeEeCCCcccc--cCCc--ccCCCccCCCCEEEEEEeCCCceEEEEECCeeee-eeeecccccCCCCcEEEEEEeCCCC
Q 001040 184 SYAFDGRRVKKW--NKEA--EPYGQSWVAGDIIGCCIDLDSDEISFYRNGVSLG-VAFSGIRKMGPGFGYYPAVSLSQGE 258 (1178)
Q Consensus 184 SyGYdG~~G~~~--h~~~--~~YG~~f~~GDVIGCgIDld~GtI~FtkNG~~LG-vAFe~I~~~~~~~~lYPAVSl~~g~ 258 (1178)
.|+..-++-+.| |+.. ...-.....|-|||+.+|.+.|++.|++|.+-.+ .||+|.. +-||||+|+..+.
T Consensus 612 gwsmyvdgerswylhnethhnrvlggvtrgtvigvrldcdrgtmeytvndrqddsmaftnmr-----glyypafsvnans 686 (699)
T KOG4367|consen 612 GWSMYVDGERSWYLHNETHHNRVLGGVTRGTVIGVRLDCDRGTMEYTVNDRQDDSMAFTNMR-----GLYYPAFSVNANS 686 (699)
T ss_pred ceeEEEcCcceeEEeccccccccccccccccEEEEEEeccCCceEEEeccccCCceeeeccc-----ceeeeeeEeccCc
Confidence 999866666666 4432 2233467899999999999999999999998664 6999875 6899999999889
Q ss_pred EEEEecCCC
Q 001040 259 RCVLNFGAR 267 (1178)
Q Consensus 259 ~V~vNFG~~ 267 (1178)
.+++.-|-.
T Consensus 687 sitvhtgls 695 (699)
T KOG4367|consen 687 SITVHTGLS 695 (699)
T ss_pred eEEEecCCC
Confidence 999998854
No 12
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=99.22 E-value=3.5e-12 Score=153.95 Aligned_cols=153 Identities=31% Similarity=0.564 Sum_probs=118.9
Q ss_pred EeCCCcEEEec--CceeeEEeCcee--e-----cCEEEEEEEEEec--------CeEEEEEecCCC--CCC------CCC
Q 001040 122 IAKLPLLVESL--AMFSSARANVCV--W-----KGKWMYEVTLETS--------GVQQLGWATLSC--PFT------DHK 176 (1178)
Q Consensus 122 LS~d~L~V~g~--s~~ssVRAn~~V--~-----sGkwYFEVtI~s~--------G~vrIGwAt~~~--~l~------~~~ 176 (1178)
+.+.+|.++.. ...+++|.|.-+ . -.|||||..|... .+.+|||+.... |.+ ..+
T Consensus 643 lp~r~lllqtrlin~vss~rpniflgvaegsaqykkwy~el~id~~dpf~tae~thlrvgwass~gyap~pggge~wggn 722 (5019)
T KOG2243|consen 643 LPGRDLLLQTRLINDVSSIRPNIFLGVAEGSAQYKKWYFELIIDHTDPFLTAEATHLRVGWASSEGYAPCPGGGEEWGGN 722 (5019)
T ss_pred CCcchhhHHHHhhhhhhhcCCceeEeeccchHHHHHHHHHHhhhcCCcceecccceeeeeeeccCCCCCCCCCcccccCC
Confidence 34444444443 367788888644 3 2489999998753 479999998653 332 356
Q ss_pred CCCCCCCceeEeCCCcccccCCcc-----cCCCccCCCCEEEEEEeCCCceEEEEECCeeeeeeeecccccCCCCcEEEE
Q 001040 177 GVGDADDSYAFDGRRVKKWNKEAE-----PYGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFGYYPA 251 (1178)
Q Consensus 177 gVG~d~~SyGYdG~~G~~~h~~~~-----~YG~~f~~GDVIGCgIDld~GtI~FtkNG~~LGvAFe~I~~~~~~~~lYPA 251 (1178)
|+|+|-+||||+|-. .|.+... +--.-....|||.||+|+....|+|.+||+.+.-.|++.. ..+-+||.
T Consensus 723 gvgddl~sygfdglh--lwsg~i~r~vas~nqhllrsddvisccldl~~psisfringqpvqgmfenfn---~dglffpv 797 (5019)
T KOG2243|consen 723 GVGDDLFSYGFDGLH--LWSGCIARAVASPNQHLLRSDDVISCCLDLGAPSISFRINGQPVQGMFENFN---IDGLFFPV 797 (5019)
T ss_pred CccchhhhcCCCcch--hhcccchhhhcChhhhhhcccchhhhhhhcCCCceEEEECCccchhHHhcCC---Ccceeeee
Confidence 899999999998865 6776521 1122467899999999999999999999999988899864 46889999
Q ss_pred EEeCCCCEEEEecCCC--CCcc-CCCCcccc
Q 001040 252 VSLSQGERCVLNFGAR--PFKY-PINCYLPL 279 (1178)
Q Consensus 252 VSl~~g~~V~vNFG~~--PFkY-pp~Gf~PL 279 (1178)
+|++.|.+|++-.|++ .|+| ||.||.|+
T Consensus 798 ~sfsagikvrfllggrhgefkflpp~gyapc 828 (5019)
T KOG2243|consen 798 MSFSAGIKVRFLLGGRHGEFKFLPPPGYAPC 828 (5019)
T ss_pred EeeccCeEEEEEecccccceeecCCCCCccH
Confidence 9999999999999998 6999 88999998
No 13
>KOG1477 consensus SPRY domain-containing proteins [General function prediction only]
Probab=98.70 E-value=3.7e-08 Score=117.04 Aligned_cols=162 Identities=19% Similarity=0.239 Sum_probs=122.4
Q ss_pred eEEeCcccC-CCCeEEeCCCcEEEe------cCceeeEEeCceee--cCEEEEEEEEEec---CeEEEEEecCCCCCCCC
Q 001040 108 IVGLEESSI-CGDVRIAKLPLLVES------LAMFSSARANVCVW--KGKWMYEVTLETS---GVQQLGWATLSCPFTDH 175 (1178)
Q Consensus 108 ~V~LD~~~~-~~~L~LS~d~L~V~g------~s~~ssVRAn~~V~--sGkwYFEVtI~s~---G~vrIGwAt~~~~l~~~ 175 (1178)
...+|+.+. +...+++.|.....- ....+.+.++..+. .|.+|||+.|... |-+.||.....++.+.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~gi~f~~~~~~~~~dvg~~~~~~~~~~N~~~~~Fe~~i~d~g~~~~i~i~~~~~~~~~~~- 109 (469)
T KOG1477|consen 31 PCEVNTINGSDFFTKNGPDMGIAFYTPPALLYHDVGVVQAGEPLPANFGIYYFEFDILDYGIEGRIKIGFLIDSFSIIE- 109 (469)
T ss_pred cceEeccCCceeEEEEcCCcceeeecCccccCCCcceeeCCCCCCcccccceeeeeHHHhhhhhceEEEEEeccccccc-
Confidence 345555554 444555555444321 12456666666664 4699999999864 5788999888887765
Q ss_pred CCCCCCCCceeEeCCCccccc-CC--cccCCCccCCCCEEEEEEeCCCceEEEEECCeeeeeeeecccccCCCCcEEEE-
Q 001040 176 KGVGDADDSYAFDGRRVKKWN-KE--AEPYGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFGYYPA- 251 (1178)
Q Consensus 176 ~gVG~d~~SyGYdG~~G~~~h-~~--~~~YG~~f~~GDVIGCgIDld~GtI~FtkNG~~LGvAFe~I~~~~~~~~lYPA- 251 (1178)
..|+..+|++|+|+.|.+++ +. ++.|+++++.||.|||+++....+|+|++||..+|.+++... ..++|.
T Consensus 110 -~~g~~~~s~~y~g~~g~l~~~~~~~~~~~~~~~~~~D~ig~~~~~~~q~i~~t~~g~~~~~~~~~~~-----~~~~~~~ 183 (469)
T KOG1477|consen 110 -SEGYTMNSLGYHGNSGLLDNGGAELGEEFGPTFTTGDEIGCGINEITQEIFFTKNGTEVGEIIKPLS-----PDLLEEN 183 (469)
T ss_pred -ccchhhhhhcccCCchhhhhhhhhhchhhcCCCCccceeeeccchhhheeeeccCcccccccccccc-----ccccccc
Confidence 46777779999999999999 43 467999999999999999999999999999999999998765 244443
Q ss_pred ----EEeCCCCEEEEecC-CCCCccCCCCc
Q 001040 252 ----VSLSQGERCVLNFG-ARPFKYPINCY 276 (1178)
Q Consensus 252 ----VSl~~g~~V~vNFG-~~PFkYpp~Gf 276 (1178)
+-+..++.|++||| ..+|.|+..++
T Consensus 184 ~n~~~~~s~~~~I~~~~g~~~~~~fd~~~~ 213 (469)
T KOG1477|consen 184 GNLAWLFSPNEEVEVNFGLEEEFRFDFSGY 213 (469)
T ss_pred cceeeEeccCceeeeeecCCCceeeccccc
Confidence 44468899999999 77899986553
No 14
>KOG1477 consensus SPRY domain-containing proteins [General function prediction only]
Probab=97.53 E-value=2.9e-05 Score=92.88 Aligned_cols=87 Identities=29% Similarity=0.486 Sum_probs=73.0
Q ss_pred eeEeCCCcccccCC--cccCCCccCCCCEEEEEEeCCCceEEEEECCeeeeeeeecccccCCCCcEEEEEEeC-CCCEEE
Q 001040 185 YAFDGRRVKKWNKE--AEPYGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFGYYPAVSLS-QGERCV 261 (1178)
Q Consensus 185 yGYdG~~G~~~h~~--~~~YG~~f~~GDVIGCgIDld~GtI~FtkNG~~LGvAFe~I~~~~~~~~lYPAVSl~-~g~~V~ 261 (1178)
++|+++++..+... +..||+.+..||+|||++|...+.-+|++||..+|++|.... ...||.+.+. .+..+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~g~~~~~~d~i~~~~~~~~~~~~~~~~~~~~gi~f~~~~-----~~~~~dvg~~~~~~~~~ 75 (469)
T KOG1477|consen 1 YGYHGDDGNFFLKSGDGQLYGPVFTTGDVIPCEVNTINGSDFFTKNGPDMGIAFYTPP-----ALLYHDVGVVQAGEPLP 75 (469)
T ss_pred CCCcccchhhhhhcccccccCCcCCccccccceEeccCCceeEEEEcCCcceeeecCc-----cccCCCcceeeCCCCCC
Confidence 46888888777644 578999999999999999999999999999999999997643 2367777765 678899
Q ss_pred EecCCCCCccCCCCc
Q 001040 262 LNFGARPFKYPINCY 276 (1178)
Q Consensus 262 vNFG~~PFkYpp~Gf 276 (1178)
.|||..||.+.+..|
T Consensus 76 ~N~~~~~Fe~~i~d~ 90 (469)
T KOG1477|consen 76 ANFGIYYFEFDILDY 90 (469)
T ss_pred cccccceeeeeHHHh
Confidence 999999999976544
No 15
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.026 Score=72.18 Aligned_cols=292 Identities=18% Similarity=0.230 Sum_probs=182.3
Q ss_pred hhHHHHHHHHHHhHHHHhhhcchhhH---hhhhh-hhHHHHHHHH-------hh-ccCCcccccchHHHHHHHHHhhhhc
Q 001040 812 NYREEVIDCVRHCAWYRISLFSRWKQ---RGMYA-TCVWVVQLLL-------VL-SKVDSVFIYIPEFYLEALVDCFHVL 879 (1178)
Q Consensus 812 vf~e~l~~~aR~~aW~r~~~~s~~kq---~~l~~-~~~Wl~~~l~-------~~-s~~~~lF~fvPefYle~l~~~~h~l 879 (1178)
..++.+.-..|+..|+.+++.-+-=+ -+.|- ++.|++|++- .. -+.+.-|+++||||+|...+-.-..
T Consensus 457 r~e~~lk~~~~~k~~~~~~~~~p~l~~~~~~f~~~~s~~l~~~~~~~~~~~~~~p~~~p~~f~~lPE~~vedi~efllf~ 536 (943)
T KOG2042|consen 457 RLEKGLKLLSSIKPCLEITLLFPSLLQRCLNFYDFMSEGLLRVVDLEMPDSSTLPLNAPCRFSALPEFFVEDIEEFLLFA 536 (943)
T ss_pred HHHHHHHHHHhhhhhhhhhhcCcHHHHHhhccHHHHHHHHHHHhhccCCcccCCCCCCccccccCchhhcCCHHHHHHHH
Confidence 34445555678888888887665411 12232 5779999765 11 1345689999999999888854444
Q ss_pred ccCCCCCCCchhHHHhhHHHHHHHHHHhhcCCcc-cCcchhHHHHHHHHHHhccHHHHHHHhccHHHHHh--hHHHhhhc
Q 001040 880 RKSDPPFVPSTIFIKQGLASFVTFVVTHFNDPRI-SSADLRDLLLQSISVLVQYKDYLAAFESNEAATLR--LPKALISA 956 (1178)
Q Consensus 880 r~~~~p~~~~~~~~~~~l~~~~~fL~~hf~D~RI-v~~d~kd~llq~l~~l~~~~~~l~a~E~~~~a~~~--~v~~ll~~ 956 (1178)
++.- ...+..+.+..+++|+.....-++- -||.+|.-|+..++ .-.....-.++-++-++.+. ++++||+.
T Consensus 537 ~~~~-----~~~l~~~~~~~~~~f~~~~~~~~~~ikNP~l~aKlvevl~-~~~~~~s~~~v~~v~~~~~~~~L~~~llr~ 610 (943)
T KOG2042|consen 537 RKLG-----KMALDLQRLADIVTFLTVFMTSSMYIKNPYLRAKLVEVLS-MPKPSLSFNAVSRVIEAHENGGLVPCLLRF 610 (943)
T ss_pred HHhc-----hhhhccccchhHHHHHHHhcccHhhhcChHHHHHHHHHHh-ccCcccCchHHHHHHHhccccccchhhhhh
Confidence 4421 1334556678899999988777764 49999999999988 22222222333344333332 78888887
Q ss_pred cCCCCcchhh-----------------HHHHHhhcCCCccccCCCCCCCchHHHHHHHHHHHhcCCcchHHHHHHHhhhh
Q 001040 957 FDNRSWIPVT-----------------NILLRLCKGHGFGSSKHGESSSSSVIFQRLLREACINDEGLFSTFLNRLFNTL 1019 (1178)
Q Consensus 957 ~d~r~W~~~~-----------------~iLlR~~~G~GF~~~k~~~~~~~S~~fQ~~l~e~l~~~~~~~~~FLn~~ln~L 1019 (1178)
|- |++.+ .|+=-+|+- |..+....+.-...++.+-.|+|.++|-+
T Consensus 611 yv---~ie~tg~s~qfydKfnvr~~i~~i~~~mw~~---------------pa~~~~~~~~~~~~~~~f~rfvn~l~Nd~ 672 (943)
T KOG2042|consen 611 YV---DIESTGQSSQFYDKFNVRRNISEILEYMWQD---------------PAYRGEFMDEAKDAPPVFVRFVNMLLNDA 672 (943)
T ss_pred ee---eeecCCCchhHHHHhHHHhhHHHHHHHHhcC---------------ccccchhhhhccccchHHHHHHHHHhhhH
Confidence 73 32221 111122211 11122222222223788889999999998
Q ss_pred chhHHHHHHHHHHHHh-----hh-------cchhhhh---------hhhhhhhHhHHhHHHHHHHHhhhcccccccCchh
Q 001040 1020 SWTMTEFSISIREMQE-----KY-------QVSEFQQ---------KKCCVIFDLSCNLTRVLEFCTHEIPQAFLSGTDT 1078 (1178)
Q Consensus 1020 NWa~sEF~~~~qEiq~-----~~-------~v~~~qq---------r~C~~~FeLsvsL~RvLE~~~~~~P~~fl~~~~~ 1078 (1178)
-|-.=|=.--+.||++ ++ ..+++++ |+|.+-+.++-.=.=+|..++...|+.|+-. -
T Consensus 673 t~lLDE~l~~L~~i~~iq~~~kn~~q~~~~~~~~~e~~~~~l~s~~r~art~~~la~et~~ll~~~tk~i~~~Fl~~--e 750 (943)
T KOG2042|consen 673 TFLLDESLSELMEIHQIQPSGKNIDQWTKLKREEREAKWGRLASDERQARTGLALANETIDLLHLLTKAIPEPFLLP--E 750 (943)
T ss_pred HHHHhHHHHHhhhhhhhhhhhhhhhhccCCcHHHHHHHHhccccchhhhcccceeccchhhHHHHHHhhcchhhcch--h
Confidence 8877776666666665 11 0111111 5677777887777778999999999999975 2
Q ss_pred hHHHHHHHHHHHHhhccCccchhhHHHHhhccCCCccccchhhhhHHHHHHHHHHh
Q 001040 1079 NLRRLTELIVFILNHVTSAADAEFFDLSLRRHGQSLEKVNRGMILAPLVGIILNLL 1134 (1178)
Q Consensus 1079 ~l~Rl~ql~~~VLnr~t~~~~~~~f~~~l~~~~~~le~v~~~~ilaa~~GILl~L~ 1134 (1178)
..-|++-.++.=|.+..-+ .|..|... .|--...++.+.+..++-|=+||=
T Consensus 751 lv~rla~MLN~nL~~lvGP-K~~~Lkvk----dp~~y~fePk~ll~~i~~iYlnl~ 801 (943)
T KOG2042|consen 751 LVERLAAMLNYNLSQLVGP-KCSDLKVK----DPEKYGFEPKQLLSQLSDIYLNLS 801 (943)
T ss_pred HHHHHHHHHhhhHHHhhCC-cccccccC----CccccCCChHHHHHHHHHHHHhhc
Confidence 3468888888888877755 23333222 223445667788999999988887
No 16
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=94.46 E-value=2.5 Score=52.41 Aligned_cols=292 Identities=18% Similarity=0.150 Sum_probs=167.7
Q ss_pred HHHHHhhcchhhHHHhhHhhhHHHHHHHHHHHHHHHHHHhh--------HHHHHHHHHHhhhhHHHHHHHHHHhHH---H
Q 001040 759 LLLYHIGLAPNFKQASYYMSHQSQSISLLEETDKQIRERAC--------SEQLKRLKEARNNYREEVIDCVRHCAW---Y 827 (1178)
Q Consensus 759 ~~lYhl~~~~~~~~a~~~~~~~~~~~~~L~et~~~ir~~~~--------~e~~~~l~~~~~vf~e~l~~~aR~~aW---~ 827 (1178)
+-.-|.||..-|+-- ..+-|+|..|+|-=+...+..+ -.++.|+.++++ .+++-|+|-- .
T Consensus 382 lt~~HyGv~~tf~~~----ek~g~~IrkLKE~le~e~~~~~gs~~At~lTaqlsrme~~lk-----~~~S~~~al~gfl~ 452 (929)
T COG5113 382 LTKIHYGVNATFTSC----EKFGEYIRKLKESLEYECRLLDGSFQATRLTAQLSRMEAYLK-----GIDSKMSALNGFLF 452 (929)
T ss_pred HHHHHhccchhHHHH----HHHHHHHHHHHHHHHHHHHHhcCchhhhhHHhHHHHHHHHHh-----hhHHHHHHHHHHHH
Confidence 345577777766543 3456788877765433322211 256666665543 3444444321 2
Q ss_pred HhhhcchhhHhhhhhhhHHHHHHHH-------------hhccCCcccccchHHHHHHHHHhh-hhcccCCCCCCCchhHH
Q 001040 828 RISLFSRWKQRGMYATCVWVVQLLL-------------VLSKVDSVFIYIPEFYLEALVDCF-HVLRKSDPPFVPSTIFI 893 (1178)
Q Consensus 828 r~~~~s~~kq~~l~~~~~Wl~~~l~-------------~~s~~~~lF~fvPefYle~l~~~~-h~lr~~~~p~~~~~~~~ 893 (1178)
...++++++ -=+.-+..|+.|+.- -.-+.-.-|-++|||.+|...|-- ...+.+ .+++.
T Consensus 453 ~tsl~~~~f-~F~~f~t~~l~rv~dp~~typf~~~~Lp~~ENap~~fk~~pe~~ie~~~ny~l~~~k~~------~Spif 525 (929)
T COG5113 453 MTSLFADEF-PFTDFMTEYLARVEDPWPTYPFYYKTLPWMENAPMTFKLIPEATIENALNYVLESIKDW------RSPIF 525 (929)
T ss_pred Hhhhhhhcc-chHHHHHHHHHHhcCCCCCCCccccccchhcCCcchhhhchHHHhccHHHHHHHHHhcc------cCchh
Confidence 333344433 122236678888421 123455668899999999998842 122221 33555
Q ss_pred HhhHHHHHHHHHHhhcCC-cccCcchhHHHHHHHHH----HhccHH--HHHHHhccHHHHHhhHHHhhhccC-CCCcchh
Q 001040 894 KQGLASFVTFVVTHFNDP-RISSADLRDLLLQSISV----LVQYKD--YLAAFESNEAATLRLPKALISAFD-NRSWIPV 965 (1178)
Q Consensus 894 ~~~l~~~~~fL~~hf~D~-RIv~~d~kd~llq~l~~----l~~~~~--~l~a~E~~~~a~~~~v~~ll~~~d-~r~W~~~ 965 (1178)
+..|.++.+|...-.+-| -|-||-+|..|.|-++. ++..+. .+++|+..+.+...+..|||+=|= =-+=+|+
T Consensus 526 ~~~L~~l~Ef~~~vl~~~~~iknp~L~~kl~~~ls~G~~~~~~~s~~~~~dif~~~kv~~r~LL~ALmaFYi~iEsTGqS 605 (929)
T COG5113 526 KKELEPLCEFVKIVLHRSSAIKNPMLNRKLDYYLSLGRDEMRMESRSIIHDIFKEGKVFSRWLLPALMAFYIEIESTGQS 605 (929)
T ss_pred hccccchhhhhhhhcccHhhhccHHHHHHHHHHHhcCcchhccCchHHHHHHHHhhhhhhhhhHHHHHhHheeeeccCcc
Confidence 566888888887655544 56699999999998764 333443 578999999888999999998663 2222333
Q ss_pred hHHHHHhhcCCCccccCCC------CCCCchHHHHHHHHHHHhcCCcchHHHHHHHhhhhchhHHHHHHHHHHHHhhh--
Q 001040 966 TNILLRLCKGHGFGSSKHG------ESSSSSVIFQRLLREACINDEGLFSTFLNRLFNTLSWTMTEFSISIREMQEKY-- 1037 (1178)
Q Consensus 966 ~~iLlR~~~G~GF~~~k~~------~~~~~S~~fQ~~l~e~l~~~~~~~~~FLn~~ln~LNWa~sEF~~~~qEiq~~~-- 1037 (1178)
+.-- +-|..|-.- .=.-|| ++- -|...=..+-+++-+|--+++|-|..-.-|=..-+-|++|-+
T Consensus 606 tqfy------dkfNirf~ic~~~~~~yK~Ps-y~~-~L~~~~~tN~~FFVkfda~mlndlt~lLDEal~~l~E~hniqs~ 677 (929)
T COG5113 606 TQFY------DKFNIRFIICMMKDFEYKQPS-YSE-GLSSIKDTNLPFFVKFDAKMLNDLTRLLDEALKELVEEHNIQSL 677 (929)
T ss_pred ccee------eeccceeehhHHHHHHhcCch-hhh-hhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3210 011111000 000011 122 222223457889999999999988877777666666666611
Q ss_pred ------------cchhhhh------hhhhhhhHhHHhHHHHHHHHhhhccccccc
Q 001040 1038 ------------QVSEFQQ------KKCCVIFDLSCNLTRVLEFCTHEIPQAFLS 1074 (1178)
Q Consensus 1038 ------------~v~~~qq------r~C~~~FeLsvsL~RvLE~~~~~~P~~fl~ 1074 (1178)
++.|.|. |+....+.|.=.-+-.+|.++...|.+|+.
T Consensus 678 Lad~~s~sn~~e~~~elq~~la~a~rqA~~sc~l~d~~~~lf~~~~~~iP~aF~~ 732 (929)
T COG5113 678 LADAISNSNISERIGELQKSLAFAKRQARNSCLLVDGCFDLFTHILDEIPDAFLV 732 (929)
T ss_pred HHhhhccCchhhHHHHHHHHHHHHHHhhcchheecccHHHHHHHHhhccchhhhh
Confidence 1222222 334444455555556678889999999984
No 17
>KOG2242 consensus Scaffold/matrix specific factor hnRNP-U/SAF-A, contains SPRY domain [RNA processing and modification]
Probab=94.39 E-value=0.009 Score=73.40 Aligned_cols=116 Identities=30% Similarity=0.464 Sum_probs=89.1
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCCceeEeCCCcccccCCcccCCCccCCCCEEEEEEeC---CCceEEEEECCeeeeeee
Q 001040 160 VQQLGWATLSCPFTDHKGVGDADDSYAFDGRRVKKWNKEAEPYGQSWVAGDIIGCCIDL---DSDEISFYRNGVSLGVAF 236 (1178)
Q Consensus 160 ~vrIGwAt~~~~l~~~~gVG~d~~SyGYdG~~G~~~h~~~~~YG~~f~~GDVIGCgIDl---d~GtI~FtkNG~~LGvAF 236 (1178)
..+|||.-..+.. +++++..+++|...+.+-|+...+.|++.+...|+|||..+. +.-.+.|.+||+.++.+|
T Consensus 107 ~~~~~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~e~f~e~~~i~c~~~~~~~d~~~l~~~k~~~~~~~~~ 182 (558)
T KOG2242|consen 107 DVRIGWSLDSIRT----LLGDEPFSYGYSETGKKSCNSEVEKYGEKFPENDVIGCFADFEILDEVELSYEKNGQDLGESF 182 (558)
T ss_pred cccccccchhhhh----ccccccccccccccccchhhHHHHHHHhhcccccccchhhcccccccCcchhhhccchhhhhh
Confidence 3577777665432 588889999999999988888888999999999999999996 457899999999999998
Q ss_pred ecccccCCCCcEEEEEEeCCCCEEEEecCCC--CCccCCCCccccc
Q 001040 237 SGIRKMGPGFGYYPAVSLSQGERCVLNFGAR--PFKYPINCYLPLQ 280 (1178)
Q Consensus 237 e~I~~~~~~~~lYPAVSl~~g~~V~vNFG~~--PFkYpp~Gf~PL~ 280 (1178)
..-.........||.+. .+...+..|||.+ +|.+.+.+|..++
T Consensus 183 ~l~~~~~~~~~~~p~vl-~~~~~ve~~f~~~~ag~~~v~~~~~~i~ 227 (558)
T KOG2242|consen 183 LLSKEDLGGQALYPHVL-RKNCAVEGNFGQKAAGYEPVKEEYTFIQ 227 (558)
T ss_pred cchhhhccCcccCcccc-cCcceeccccccccccccccchhhhhhh
Confidence 65432233346999985 4557899999997 3544445554443
No 18
>PF13765 PRY: SPRY-associated domain; PDB: 3KB5_A 2VOK_A 2VOL_B 2FBE_B 2WL1_A 2IWG_E.
Probab=78.76 E-value=2.1 Score=36.38 Aligned_cols=23 Identities=9% Similarity=0.047 Sum_probs=18.4
Q ss_pred EEeCcccCCCCeEEeCCCcEEEe
Q 001040 109 VGLEESSICGDVRIAKLPLLVES 131 (1178)
Q Consensus 109 V~LD~~~~~~~L~LS~d~L~V~g 131 (1178)
|+||+++++++|.||+|+.+|..
T Consensus 1 ltlDp~TAh~~L~lS~d~k~v~~ 23 (49)
T PF13765_consen 1 LTLDPNTAHPSLVLSEDGKSVRY 23 (49)
T ss_dssp -EB-TTTS-TTEEEETTSSEEEE
T ss_pred CEECcccCCCCeEECCCCeEEEE
Confidence 57999999999999999999964
No 19
>smart00588 NEUZ domain in neuralized proteins.
Probab=67.08 E-value=87 Score=31.86 Aligned_cols=99 Identities=15% Similarity=0.116 Sum_probs=57.8
Q ss_pred CCCCeEEeCCCcEEEecCc-e--eeEEeCceeecC-EEEEEEEEEe---cCeEEEEEecCCCC-CCC-------CCCCCC
Q 001040 116 ICGDVRIAKLPLLVESLAM-F--SSARANVCVWKG-KWMYEVTLET---SGVQQLGWATLSCP-FTD-------HKGVGD 180 (1178)
Q Consensus 116 ~~~~L~LS~d~L~V~g~s~-~--ssVRAn~~V~sG-kwYFEVtI~s---~G~vrIGwAt~~~~-l~~-------~~gVG~ 180 (1178)
+..++.|++++.++..... | +-|.++.++..| ++..||.-.. .|.++||+++.+-. +.. ...+..
T Consensus 9 ~G~ni~l~~~~~~A~R~~~~f~~givFS~rPl~~~E~~~v~i~~~~~~w~G~l~~G~Ts~dP~~l~~~~lp~~~~~dl~~ 88 (123)
T smart00588 9 HGSNIRLSDSGRVARRSASDFCNALVFSARPLRINELFEVKIEKVVRKWSGALRFGVTTCDPATLRPASLPTNACPDLVD 88 (123)
T ss_pred cCCCeEECCCCcEEEcccCCcCceEEecCCCCcCCCEEEEEEEEecCCccCceEEEEecCCcccccCccCcccCcccccc
Confidence 4568999999999876532 4 356788888765 4444443221 37899999987532 110 001111
Q ss_pred CCCceeEeCCCcccccCCcccCCC-ccCCCCEEEEEEeCCCceEEEEEC
Q 001040 181 ADDSYAFDGRRVKKWNKEAEPYGQ-SWVAGDIIGCCIDLDSDEISFYRN 228 (1178)
Q Consensus 181 d~~SyGYdG~~G~~~h~~~~~YG~-~f~~GDVIGCgIDld~GtI~FtkN 228 (1178)
-...|... .+. ....||+++..++ ..|.+.|.+|
T Consensus 89 ~~g~wv~~-------------~~~~~~~~g~~l~f~~~-~~G~v~~~vn 123 (123)
T smart00588 89 MSGFWAKA-------------LGEGLAEQGGILGLDVL-AEGEVVGVIN 123 (123)
T ss_pred cCCcceEE-------------CChhhccCCCEEEEEEC-CCceEEEEeC
Confidence 12222221 122 2367888888776 4777777776
No 20
>smart00589 PRY associated with SPRY domains.
Probab=49.71 E-value=19 Score=30.03 Aligned_cols=25 Identities=12% Similarity=-0.088 Sum_probs=21.8
Q ss_pred eEEeCcccCCCCeEEeCCCcEEEec
Q 001040 108 IVGLEESSICGDVRIAKLPLLVESL 132 (1178)
Q Consensus 108 ~V~LD~~~~~~~L~LS~d~L~V~g~ 132 (1178)
.|.||++++++++.||+|+..+...
T Consensus 3 ~vtld~~tA~~~l~lS~d~~~v~~~ 27 (52)
T smart00589 3 DVTLDPDTAHPYLLLSEDRRSVRYG 27 (52)
T ss_pred CCEECcccCCCCeEECCCCCEEEEC
Confidence 5789999999999999999888643
No 21
>PF07177 Neuralized: Neuralized; InterPro: IPR006573 NEUZ is a domain of unknown function found in neuralized proteins, i.e. proteins involved in the specification of the neuroblast during cellular differentiation. ; PDB: 2YUE_A 2E63_A.
Probab=48.68 E-value=65 Score=29.70 Aligned_cols=55 Identities=15% Similarity=0.196 Sum_probs=31.4
Q ss_pred cccCCCCeEEeCCCcEEEecCc--eeeEEeCceeecCEEEEEEEEEe-----cCeEEEEEecC
Q 001040 113 ESSICGDVRIAKLPLLVESLAM--FSSARANVCVWKGKWMYEVTLET-----SGVQQLGWATL 168 (1178)
Q Consensus 113 ~~~~~~~L~LS~d~L~V~g~s~--~ssVRAn~~V~sGkwYFEVtI~s-----~G~vrIGwAt~ 168 (1178)
++.+..++.|++|+.++...+. -+-|.++.++..|. .|+|+|.. .|.++||+++.
T Consensus 6 ~~~~G~nV~L~~~~~~A~R~~sf~~giVFS~rPl~~~E-~~~v~I~~~~~~wsG~L~~GvT~~ 67 (69)
T PF07177_consen 6 PNVHGKNVRLSNDGTVARRVSSFNNGIVFSSRPLRIGE-KFEVRIDEVEPSWSGSLRIGVTSC 67 (69)
T ss_dssp C-EE-TTEEE-SSS-EEEEST-SSS-EEEESS-B-TT--EEEEEEEEE-SSSSS--EEEEESS
T ss_pred CcccCCCEEEcCCCeEEEecccCCceEEEecCCccCCC-EEEEEEEecCCCceeEEEEeeEcc
Confidence 3334568999999999987553 35777888887653 34555543 47899999875
No 22
>KOG2188 consensus Predicted RNA-binding protein, contains Pumilio domains [Translation, ribosomal structure and biogenesis]
Probab=33.15 E-value=2.6e+02 Score=35.78 Aligned_cols=207 Identities=13% Similarity=0.176 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHhhcchhhHHHhhHhhhHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHhhhhHHHHHHHHHHhHHHHhh
Q 001040 753 ELLDALLLLYHIGLAPNFKQASYYMSHQSQSISLLEETDKQIRE--RACSEQLKRLKEARNNYREEVIDCVRHCAWYRIS 830 (1178)
Q Consensus 753 elLD~~~~lYhl~~~~~~~~a~~~~~~~~~~~~~L~et~~~ir~--~~~~e~~~~l~~~~~vf~e~l~~~aR~~aW~r~~ 830 (1178)
.++-+ -+|.|++|+ .|-+.+|...+.+.-+++...=|-+ ..++++++ +...-=.--|+.++++.+=++.-
T Consensus 368 ~~f~~--rl~~La~~p---~aNF~lQrli~h~~~~e~v~~v~eeL~P~~~~LL~---~g~~gVv~sLia~~~rl~s~q~~ 439 (650)
T KOG2188|consen 368 IVFCG--RLDELAVHP---IANFPLQRLINHLTSLEDVGSVIEELAPKLSSLLE---QGNSGVVASLIAASARLGSYQDK 439 (650)
T ss_pred HHHHH--HHHHHHhCc---cccchHHHHHHhccCHHHHHHHHHHHhHHHHHHHH---cCCchHhHHHHHHHHhhchhHHH
Confidence 45555 799999999 3444777776666555555333322 44455533 22222233456666666555554
Q ss_pred hcc---------hhhHhhhhhhhHHHHHHHHhhccCCccc-ccch-HH-----------------HHHHHHHhhhhcccC
Q 001040 831 LFS---------RWKQRGMYATCVWVVQLLLVLSKVDSVF-IYIP-EF-----------------YLEALVDCFHVLRKS 882 (1178)
Q Consensus 831 ~~s---------~~kq~~l~~~~~Wl~~~l~~~s~~~~lF-~fvP-ef-----------------Yle~l~~~~h~lr~~ 882 (1178)
++. .++..++.- ++|..+.--|.-- .+.- ++ ++..+++++-+|..
T Consensus 440 ~l~~Li~a~~~~~~~~k~il~------~lL~~~~~~g~~~~~~~t~~~h~~ga~lle~lv~f~k~~i~~litsll~L~~- 512 (650)
T KOG2188|consen 440 MLQQLIQAFHAASESKKNILP------CLLFSLTLFGCVGEWFLTEKFHQKGAVLLEELVNFSKTHIQTLITSLLSLSE- 512 (650)
T ss_pred HHHHHHHHHhcCChhhcchHH------HHHHHhhhcccccccccHHHHhhchhHHHHHHHhhchhhhHHHHHHHHhhhH-
Confidence 443 333333331 1122222111111 1111 11 22333333333311
Q ss_pred CCCCCCchhHHHhhHHHHHHHHHHhhcCCcccCcchhHHHHHHHH----HHhccHHHHHHHhcc-H----HHHHhhHHHh
Q 001040 883 DPPFVPSTIFIKQGLASFVTFVVTHFNDPRISSADLRDLLLQSIS----VLVQYKDYLAAFESN-E----AATLRLPKAL 953 (1178)
Q Consensus 883 ~~p~~~~~~~~~~~l~~~~~fL~~hf~D~RIv~~d~kd~llq~l~----~l~~~~~~l~a~E~~-~----~a~~~~v~~l 953 (1178)
+-+.+-....--.-|+.||-++.=+++-.|+.||..+. .|.++-.+=+.||++ + ..+++|++.|
T Consensus 513 -------eqi~e~~~~~~~ShlIeavL~S~~l~~~~~~kLi~~l~g~~~~La~~~~GSrv~eK~wea~~~~~k~rIakeL 585 (650)
T KOG2188|consen 513 -------EQILEMSCNGVGSHLIEAVLASKDLGEKIKEKLINILDGSFVTLALSTFGSRVFEKCWEATDVLYKERIAKEL 585 (650)
T ss_pred -------HHHHHHhcCCchHHHHHHHHHhccccHHHHHHHHHHhhccchheeecCcccHHHHHHHHHhhHHHHHHHHHHH
Confidence 11111122233345667888888889999999998864 466676666778877 4 3457999999
Q ss_pred hhccCCCCcchhhHHHHHhhcCCCcccc
Q 001040 954 ISAFDNRSWIPVTNILLRLCKGHGFGSS 981 (1178)
Q Consensus 954 l~~~d~r~W~~~~~iLlR~~~G~GF~~~ 981 (1178)
+.--+.=.=-+-..++++=|+=.+|.-+
T Consensus 586 ~~~~~~vk~s~~gk~v~~~~~l~ly~~~ 613 (650)
T KOG2188|consen 586 VGIHNDVKSSKYGKFVMLNWDLELYRRS 613 (650)
T ss_pred HhhccccccCcchHHHHHhccHHHHhcC
Confidence 9876622222223577788888888765
No 23
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=30.48 E-value=48 Score=28.52 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHh--hhcchhhh
Q 001040 1022 TMTEFSISIREMQE--KYQVSEFQ 1043 (1178)
Q Consensus 1022 a~sEF~~~~qEiq~--~~~v~~~q 1043 (1178)
.++||+.+++||++ ++++.|..
T Consensus 9 ql~~l~~~l~elk~~l~~Q~kE~~ 32 (45)
T PF11598_consen 9 QLSELNQMLQELKELLRQQIKETR 32 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999 56665553
No 24
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=29.09 E-value=2.5e+02 Score=35.52 Aligned_cols=29 Identities=14% Similarity=0.362 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhc----CCcchHHHHHHHhhhhch
Q 001040 991 VIFQRLLREACIN----DEGLFSTFLNRLFNTLSW 1021 (1178)
Q Consensus 991 ~~fQ~~l~e~l~~----~~~~~~~FLn~~ln~LNW 1021 (1178)
..++..|.++... |.. +..+++.+|+. +|
T Consensus 51 ~~l~~~L~~L~~~Vs~Ld~~-~~~LV~ail~~-~W 83 (563)
T PF05327_consen 51 SQLIRWLKALSSCVSLLDSS-CKQLVEAILSL-NW 83 (563)
T ss_dssp HHHHHHHHHHHHGGGGG-SC-CHHHHHHHHT--TG
T ss_pred HHHHHHHHHHHHHHHHhhhH-HHHHHHHHHcC-CC
Confidence 4588888775444 666 99999999999 99
No 25
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=21.18 E-value=2.9e+02 Score=37.96 Aligned_cols=110 Identities=17% Similarity=0.253 Sum_probs=65.6
Q ss_pred hhhhHHHHHHHHHHHHHhhcchhhHHHhhHhhhHHHHHHHHHHHHHHHHH----HhhHHHHHH-------------HHHH
Q 001040 747 ATLKEEELLDALLLLYHIGLAPNFKQASYYMSHQSQSISLLEETDKQIRE----RACSEQLKR-------------LKEA 809 (1178)
Q Consensus 747 ~~~~~~elLD~~~~lYhl~~~~~~~~a~~~~~~~~~~~~~L~et~~~ir~----~~~~e~~~~-------------l~~~ 809 (1178)
..++.+.|||+++.||.=.-++.+++.- ++.+.+.-.+..=++|++ +.+-|++|= -|.+
T Consensus 24 ~~~~~e~LLD~l~~L~~ec~~~~Lrr~k----~i~~fl~~~kp~v~~v~~lrl~~~DfeilKvIGrGaFGEV~lVr~k~t 99 (1317)
T KOG0612|consen 24 SAINVETLLDTLIALYDECDNSALRRDK----NIAEFLNRYKPIVKKVKELRLKAEDFEILKVIGRGAFGEVALVRHKST 99 (1317)
T ss_pred ccccHHHHHHHHHHHHHHhccHHHHhhh----hHHHHHHHhHHHHHHHHHHhCCHHhhHHHHHhcccccceeEEEEeecc
Confidence 4588999999999999999988887543 445555555555555543 344466553 3455
Q ss_pred hhhhHHHHHHHHHHhHHHHhhhcchhhHhhhhhhhHHHHHHHHhhccCCcc
Q 001040 810 RNNYREEVIDCVRHCAWYRISLFSRWKQRGMYATCVWVVQLLLVLSKVDSV 860 (1178)
Q Consensus 810 ~~vf~e~l~~~aR~~aW~r~~~~s~~kq~~l~~~~~Wl~~~l~~~s~~~~l 860 (1178)
.+||+=+++--=--+----++.|-.++-.-.++-.-|+.++--+.-+...|
T Consensus 100 ~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~ns~Wiv~LhyAFQD~~~L 150 (1317)
T KOG0612|consen 100 EKVYAMKILNKWEMLKRAETACFREERDIMVFGNSEWIVQLHYAFQDERYL 150 (1317)
T ss_pred ccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCCcHHHHHHHHHhcCccce
Confidence 667765554321111112456666666555566667888854443333333
Done!