Query 001040
Match_columns 1178
No_of_seqs 241 out of 1187
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 07:53:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001040.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001040hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3toj_A SET1/ASH2 histone methy 100.0 1.6E-36 5.5E-41 321.5 14.8 190 104-304 8-211 (213)
2 2yyo_A SPRY domain-containing 100.0 6.1E-32 2.1E-36 277.7 15.8 154 115-275 6-171 (171)
3 3emw_A SPRY domain-containing 99.9 2.2E-22 7.6E-27 214.0 17.0 155 106-264 41-214 (217)
4 2jk9_A SPRY domain-containing 99.9 7.9E-22 2.7E-26 208.1 17.0 155 106-264 30-205 (212)
5 2afj_A Gene rich cluster, C9 g 99.8 6.8E-21 2.3E-25 203.2 10.5 157 106-266 38-213 (226)
6 3m62_A Ubiquitin conjugation f 99.7 2.2E-15 7.4E-20 186.5 36.7 251 859-1135 528-822 (968)
7 2vok_A 52 kDa RO protein; poly 99.3 9.3E-12 3.2E-16 130.1 15.7 144 107-255 9-170 (188)
8 2wl1_A Pyrin, marenostrin; amy 99.3 8.7E-12 3E-16 130.5 14.2 144 107-255 13-174 (191)
9 2fbe_A Predicted: similar to R 99.3 2.7E-11 9.4E-16 127.8 16.4 144 107-255 10-171 (201)
10 3kb5_A Tripartite motif-contai 99.2 7.3E-11 2.5E-15 123.6 15.7 146 106-255 11-179 (193)
11 3uv9_A TRIM5alpha, tripartite 99.2 2.9E-11 9.9E-16 126.0 12.5 145 107-256 12-174 (186)
12 4b3n_A Maltose-binding peripla 98.8 2.4E-08 8.1E-13 119.9 14.0 146 106-256 409-594 (602)
13 2e63_A KIAA1787 protein; struc 97.9 0.00012 4E-09 75.7 14.5 132 116-256 13-162 (170)
14 2yue_A Protein neuralized; str 96.9 0.0099 3.4E-07 61.3 13.9 137 109-263 9-160 (168)
15 3hd7_A Vesicle-associated memb 20.9 2.9E+02 0.0098 25.4 7.7 29 801-829 40-68 (91)
No 1
>3toj_A SET1/ASH2 histone methyltransferase complex subun; transcription, SPRY domain, prote binding, histone methylation, RBBP5, DPY-30, nuclear; 2.07A {Homo sapiens}
Probab=100.00 E-value=1.6e-36 Score=321.47 Aligned_cols=190 Identities=28% Similarity=0.479 Sum_probs=162.2
Q ss_pred CCCceEEeCcccCCCCeEEeCCCcEEEecCceeeEEeCceeecCEEEEEEEEEe---cCeEEEEEecCCCCCCCCCCCCC
Q 001040 104 SGPHIVGLEESSICGDVRIAKLPLLVESLAMFSSARANVCVWKGKWMYEVTLET---SGVQQLGWATLSCPFTDHKGVGD 180 (1178)
Q Consensus 104 ~gp~~V~LD~~~~~~~L~LS~d~L~V~g~s~~ssVRAn~~V~sGkwYFEVtI~s---~G~vrIGwAt~~~~l~~~~gVG~ 180 (1178)
+.++.|.||+.++++.+.||+|++++++.++|.+|||+.++.+|+|||||+|.. .+.++|||++..++++ .++|+
T Consensus 8 ~~~~~v~ld~~d~~~~l~ls~d~l~v~~~~~~~~vra~~~v~~G~~YfEV~v~~~~~~~~~~iG~a~~~~~~~--~~~G~ 85 (213)
T 3toj_A 8 CLYERVLLALHDRAPQLKISDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNLQ--APLGY 85 (213)
T ss_dssp EEECCCCEEEEEECTTSEECTTSSEEECCSSCEEEEESCCBSSEEEEEEEEEEECCTTCEEEEEEECTTSCTT--SCTTS
T ss_pred hcCCeEEechhhCCCCEEEcCCCcEEEeCCceeEEEeCCCccCCeEEEEEEEeecCCCceEEEEeccCCcccc--cCCCC
Confidence 346789999999999999999999999988999999999999999999999998 5799999999988775 47999
Q ss_pred CCCceeEeCCCcccccCC-cccCCCccCCCCEEEEEEeCCC--------ceEEEEECCeeeeeeeecccccCCCCcEEEE
Q 001040 181 ADDSYAFDGRRVKKWNKE-AEPYGQSWVAGDIIGCCIDLDS--------DEISFYRNGVSLGVAFSGIRKMGPGFGYYPA 251 (1178)
Q Consensus 181 d~~SyGYdG~~G~~~h~~-~~~YG~~f~~GDVIGCgIDld~--------GtI~FtkNG~~LGvAFe~I~~~~~~~~lYPA 251 (1178)
+.+||||++++|++||++ .++||++|+.||||||+||+++ ++|+||+||+.+|.||+++. .+.|||+
T Consensus 86 d~~S~gy~~~~G~~~h~~~~~~yg~~~~~GDvIGc~ld~~~~~~~~~~~g~i~Ft~NG~~lg~aF~~~~----~~~lyPa 161 (213)
T 3toj_A 86 DKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTISGRGSSEIIFYKNGVNQGVAYKDIF----EGVYFPA 161 (213)
T ss_dssp STTEEEEETTTTCEEETTEEECCSCCCCTTCEEEEEEEECCC-----CCCEEEEEETTEEEEEEEESCC----SSCBEEE
T ss_pred CCCcEEEECCCCeEEeCCcCcccCCCCCCCCEEEEEEEcCCCccccCCccEEEEEeCCeeeeeeEEcCC----CCcEEEE
Confidence 999999999999999876 5789999999999999999998 79999999999999999875 2689999
Q ss_pred EEeCCCCEEEEecCCCCCccCCC--CccccccCCCchhHHHHHHHHHHHHhcCch
Q 001040 252 VSLSQGERCVLNFGARPFKYPIN--CYLPLQESPPVNVFATQLLQCLSRLLGMDK 304 (1178)
Q Consensus 252 VSl~~g~~V~vNFG~~PFkYpp~--Gf~PL~~pP~~~~~a~~ll~~~~~ll~~~~ 304 (1178)
||+..++++++|||+ ||+|||+ +|+|+++.. +++..++++++++++.+
T Consensus 162 vsl~~~~~v~~NFG~-~F~~~p~~~~~~~~~~~~----~~~~~~~~~~d~~~~~~ 211 (213)
T 3toj_A 162 ISLYKSCTVSINFGP-CFKYPPKDLTYRPMSDMG----WGAVVEHTLADVLYHVE 211 (213)
T ss_dssp EEEESSCEEEEECSS-SCSSCCSSCCCEEGGGGG----EEEECCC----------
T ss_pred EEcCCCCEEEEECCC-CCccCCCCCceEcHHHhc----cccccHHHHHHHHHHhh
Confidence 999889999999999 9999876 699996543 34556778888887643
No 2
>2yyo_A SPRY domain-containing protein 3; NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens}
Probab=99.97 E-value=6.1e-32 Score=277.70 Aligned_cols=154 Identities=23% Similarity=0.307 Sum_probs=134.4
Q ss_pred cCCCCeEEeCCCcEEEecC-ceeeEEeCceeecCEEEEEEEEEec---CeEEEEEecCCCCCCCCCCCCCCCCceeEeCC
Q 001040 115 SICGDVRIAKLPLLVESLA-MFSSARANVCVWKGKWMYEVTLETS---GVQQLGWATLSCPFTDHKGVGDADDSYAFDGR 190 (1178)
Q Consensus 115 ~~~~~L~LS~d~L~V~g~s-~~ssVRAn~~V~sGkwYFEVtI~s~---G~vrIGwAt~~~~l~~~~gVG~d~~SyGYdG~ 190 (1178)
+.+..|.++++.|++++.+ .|+++||++++.+|+|||||+|.+. +.++|||++..++++. .+|++.+||||+++
T Consensus 6 dr~~~l~~~~d~l~~~~~~~~~~~vra~~p~~~g~~YfEv~i~~~~~~~~~~IG~a~~~~~~~~--~~G~d~~S~gy~~~ 83 (171)
T 2yyo_A 6 SGFKHILVDGDTLSYHGNSGEVGCYVASRPLTKDSNYFEVSIVDSGVRGTIAVGLVPQYYSLDH--QPGWLPDSVAYHAD 83 (171)
T ss_dssp CEEESEEEETTEEEECCCSSCCEEEECSSCCCSSSCEEEEEEEEETTTCCCEEEEECTTCCTTS--CTTSSTTCEEEETT
T ss_pred cCcceEEEcCCEEEEeCCCCceeEEEECCCCCCCCEEEEEEEEECCCCcEEEEEecCCCCCCcc--CCCccCCEEEEEcC
Confidence 4456889999999998875 8999999999999999999999986 7999999999988864 68999999999999
Q ss_pred CcccccCC--cccCCCccCCCCEEEEEEeCC-----CceEEEEECCeeeeeeeecccccCCCCcEEEEEEeCC-CCEEEE
Q 001040 191 RVKKWNKE--AEPYGQSWVAGDIIGCCIDLD-----SDEISFYRNGVSLGVAFSGIRKMGPGFGYYPAVSLSQ-GERCVL 262 (1178)
Q Consensus 191 ~G~~~h~~--~~~YG~~f~~GDVIGCgIDld-----~GtI~FtkNG~~LGvAFe~I~~~~~~~~lYPAVSl~~-g~~V~v 262 (1178)
++++||+. .+.||++|+.||||||+||++ .++|+||+||+.+|.||.++. ...|||+|++.. +++|++
T Consensus 84 dG~~~~~~~~~~~yg~~f~~GDvIGc~id~~~~~~~~~~i~Ft~NG~~lg~af~~~~----~~~lyPaV~l~~~g~~v~v 159 (171)
T 2yyo_A 84 DGKLYNGRAKGRQFGSKCNSGDRIGCGIEPVSFDVQTAQIFFTKNGKRVGSTIMPMS----PDGLFPAVGMHSLGEEVRL 159 (171)
T ss_dssp TCCEESSSSCCBCCSCCCCTTCEEEEEECGGGGSSSCEEEEEEETTEEEEEEEESSC----SSSCEEEEEECSTTEEEEE
T ss_pred CCeEEeCCCCCCcCCCCCCCCCEEEEEEEeccCCCCcEEEEEEECCEEcCceecCCc----CCCEEEEEEEecCCCEEEE
Confidence 99999874 578999999999999999998 499999999999999999875 369999999986 899999
Q ss_pred ecCCCCCccCCCC
Q 001040 263 NFGARPFKYPINC 275 (1178)
Q Consensus 263 NFG~~PFkYpp~G 275 (1178)
|||+ +|+|||.|
T Consensus 160 NFG~-~~~~pp~~ 171 (171)
T 2yyo_A 160 HLNA-ELSGPSSG 171 (171)
T ss_dssp ETTC-CC------
T ss_pred ECCC-CCcCCCCC
Confidence 9998 59999875
No 3
>3emw_A SPRY domain-containing SOCS box protein 2; apoptosis nucleus, apoptosis, UBL conjugation pathwayc, CL transcription regulation, transcription, phosphoprotein; 1.80A {Homo sapiens} PDB: 3ek9_A
Probab=99.88 E-value=2.2e-22 Score=214.04 Aligned_cols=155 Identities=19% Similarity=0.297 Sum_probs=133.1
Q ss_pred CceEEeCcccCCCCeEEeCCCcEEEec---CceeeEEeCceeecCEEEEEEEEEec---CeEEEEEecCCCCC---CCCC
Q 001040 106 PHIVGLEESSICGDVRIAKLPLLVESL---AMFSSARANVCVWKGKWMYEVTLETS---GVQQLGWATLSCPF---TDHK 176 (1178)
Q Consensus 106 p~~V~LD~~~~~~~L~LS~d~L~V~g~---s~~ssVRAn~~V~sGkwYFEVtI~s~---G~vrIGwAt~~~~l---~~~~ 176 (1178)
+..++||++++++.+.||+|++++... ..|.+|+++.++.+|+|||||+|... +.+.|||++..+++ ....
T Consensus 41 ~~~~tlDp~ta~~~L~lSed~~~v~~~~~~~~~~~Vl~~~~~~sGrhYWEV~v~~~~~g~~~~vGv~~~~~~r~~~g~~~ 120 (217)
T 3emw_A 41 QRRHGWNPKDCSENIEVKEGGLYFERRPVAQSTDGARGKRGYSRGLHAWEISWPLEQRGTHAVVGVATALAPLQTDHYAA 120 (217)
T ss_dssp HHHTSEEEEEECTTEEEEGGGTEEEECCBSSCEEEEEESCCBSSSEEEEEEECCGGGCTTCCEEEEECTTSCCEESSSCC
T ss_pred ccceEeCcccCCCCEEECCCCeEEEECccCCCCCEEEeCCCccCccEEEEEEEcccCCCCceeEEEEcCccccccCCccc
Confidence 356889999999999999999999763 36889999999999999999999874 58999999998874 1234
Q ss_pred CCCCCCCceeEeCCCcccccCCc----ccCC-----CccCCCCEEEEEEeCCCceEEEEECCeeeeeeeecccccCCCCc
Q 001040 177 GVGDADDSYAFDGRRVKKWNKEA----EPYG-----QSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFG 247 (1178)
Q Consensus 177 gVG~d~~SyGYdG~~G~~~h~~~----~~YG-----~~f~~GDVIGCgIDld~GtI~FtkNG~~LGvAFe~I~~~~~~~~ 247 (1178)
.+|++..||+|+..++..||++. ..|+ +.+..||+|||.+|+++|+|+||+||+.+|.||+++. +.+
T Consensus 121 ~lG~~~~SW~l~~~~g~~~h~~~~~~~~~~~~~~~~~~~~~~d~IGV~LD~~~G~LsFy~ng~~lg~aF~~~~----~~~ 196 (217)
T 3emw_A 121 LLGSNSESWGWDIGRGKLYHQSKGPGAPQYPAGTQGEQLEVPERLLVVLDMEEGTLGYAIGGTYLGPAFRGLK----GRT 196 (217)
T ss_dssp CTTSSTTEEEEETTTCBEESSCCSSCCCBSSSSSTTCCCCCCSEEEEEEETTTTEEEEEETTEEEEEEECCCT----TCC
T ss_pred cccCCCCEEEEEeCCCcEEeCCcccCCccccccccccCCCCCCEEEEEEEcCCCEEEEEECCeEeEEEEECCC----CCE
Confidence 69999999999987788898753 2565 4689999999999999999999999999999999875 368
Q ss_pred EEEEEEeC-CCCEEEEec
Q 001040 248 YYPAVSLS-QGERCVLNF 264 (1178)
Q Consensus 248 lYPAVSl~-~g~~V~vNF 264 (1178)
+||+|++. .+++|+++|
T Consensus 197 LyP~~sl~~g~~~v~l~~ 214 (217)
T 3emw_A 197 LYPAVSAVWGQCQVRIRY 214 (217)
T ss_dssp BEEEEEECSTTCEEEEEE
T ss_pred EEEEEEeccCCcEEEEEe
Confidence 99999985 678898875
No 4
>2jk9_A SPRY domain-containing SOCS box protein 1; transcription regulation, transcription; 1.79A {Homo sapiens} PDB: 3f2o_A 2fnj_A 2v24_A 2ihs_A
Probab=99.87 E-value=7.9e-22 Score=208.10 Aligned_cols=155 Identities=20% Similarity=0.328 Sum_probs=130.5
Q ss_pred CceEEeCcccCCCCeEEeCCC-cEEEec---CceeeEEeCceeecCEEEEEEEEEe---cCeEEEEEecCCCCCC---CC
Q 001040 106 PHIVGLEESSICGDVRIAKLP-LLVESL---AMFSSARANVCVWKGKWMYEVTLET---SGVQQLGWATLSCPFT---DH 175 (1178)
Q Consensus 106 p~~V~LD~~~~~~~L~LS~d~-L~V~g~---s~~ssVRAn~~V~sGkwYFEVtI~s---~G~vrIGwAt~~~~l~---~~ 175 (1178)
+..++||+++++.++.|++|+ +++... ..|.+|+++.++++|+|||||+|.. .+.+.|||++...+.. ..
T Consensus 30 ~~~~tldp~ta~~~L~lsed~~~~~~~~~~~~~~~~Vlg~~~f~sGrhYWEV~v~~~~~~~~w~vGV~~~~~~r~~~g~~ 109 (212)
T 2jk9_A 30 QLLHSWNNNDRSLNVFVKEDDKLIFHRHPVAQSTDAIRGKVGYTRGLHVWQITWAMRQRGTHAVVGVATADAPLHSVGYT 109 (212)
T ss_dssp HHHTSEEEEEECTTEEEETTEEEEEEECCBTTEEEEEEESCCBCSSEEEEEEECCGGGCTTCCEEEEECTTSCCEEESSC
T ss_pred ccccccChhhcCCceEEeCCCeEEEEECCCCCccceEEcCCCccCCeEEEEEEEecccCCCcEEEEEEcCCccccccCcc
Confidence 356889999999999999997 466532 3788999999999999999999984 4689999999998762 23
Q ss_pred CCCCCCCCceeEeCCCcccccCCcc----c------CCCccCCCCEEEEEEeCCCceEEEEECCeeeeeeeecccccCCC
Q 001040 176 KGVGDADDSYAFDGRRVKKWNKEAE----P------YGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPG 245 (1178)
Q Consensus 176 ~gVG~d~~SyGYdG~~G~~~h~~~~----~------YG~~f~~GDVIGCgIDld~GtI~FtkNG~~LGvAFe~I~~~~~~ 245 (1178)
..+|.+..||+|++.+++.||++.. . |++.|..||+|||.+|+++|+|+||+||+.++.+|+++. +
T Consensus 110 ~~~G~~~~sw~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~IGv~LD~e~G~lsFy~ng~~l~~aF~~~~----~ 185 (212)
T 2jk9_A 110 TLVGNNHESWGWDLGRNRLYHDGKNQPSKTYPAFLEPDETFIVPDSFLVALDMDDGTLSFIVDGQYMGVAFRGLK----G 185 (212)
T ss_dssp CCTTSSTTEEEEETTTTEEEESTTTSCCEESSTTSCTTCCCCCCSEEEEEEETTTTEEEEEETTEEEEEEECCCT----T
T ss_pred cccccCCCcEeeECCCCcEEECCcccCccccCcccccCCcCCCCCEEEEEEECCCCEEEEEECCEEeEEEeccCC----C
Confidence 4679999999999977888875421 2 467789999999999999999999999999999999764 3
Q ss_pred CcEEEEEEeC-CCCEEEEec
Q 001040 246 FGYYPAVSLS-QGERCVLNF 264 (1178)
Q Consensus 246 ~~lYPAVSl~-~g~~V~vNF 264 (1178)
.++||+|++. .+..|++||
T Consensus 186 ~~l~P~f~l~~g~~~v~l~~ 205 (212)
T 2jk9_A 186 KKLYPVVSAVWGHCEIRMRY 205 (212)
T ss_dssp CCBEEEEEECCTTCEEEEEE
T ss_pred CEEeeEEEEEcCCcEEEEEE
Confidence 6999999995 567899987
No 5
>2afj_A Gene rich cluster, C9 gene; beta sandwich, gene regulation; NMR {Mus musculus} SCOP: b.29.1.22
Probab=99.83 E-value=6.8e-21 Score=203.22 Aligned_cols=157 Identities=19% Similarity=0.306 Sum_probs=129.3
Q ss_pred CceEEeCcccCCCCeEEeCCCcEEEec---CceeeEEeCceeecCEEEEEEEEEe---cCeEEEEEecCCCCCC---CCC
Q 001040 106 PHIVGLEESSICGDVRIAKLPLLVESL---AMFSSARANVCVWKGKWMYEVTLET---SGVQQLGWATLSCPFT---DHK 176 (1178)
Q Consensus 106 p~~V~LD~~~~~~~L~LS~d~L~V~g~---s~~ssVRAn~~V~sGkwYFEVtI~s---~G~vrIGwAt~~~~l~---~~~ 176 (1178)
+..++||++++++++.||+|++++... ..+.+|+++.++.+|+|||||+|.. .+.+.|||++...++. ...
T Consensus 38 ~~~~tLDp~ta~~~L~lSed~~~v~~~~~~~~~~~Vlg~~~f~sGrhYWEV~V~~~~~~~~w~vGV~~~s~~~~r~~~~~ 117 (226)
T 2afj_A 38 QRHHGWNPKDCSENIDVKEGGLCFERRPVAQSTDGVRGKRGYSRGLHAWEISWPLEQRGTHAVVGVATALAPLQADHYAA 117 (226)
T ss_dssp HHHHSSCCSSSCCSSEEETTTTEEECSSCTTTSSSEEECCCCCCSEEEEEEECCCCSSSCCCEEEEEESSCCCSSCSSSC
T ss_pred ccccEEccccCCCCEEEeCCCEEEEECCCCCCcCeEEECCCccCCEEEEEEEEeccCCCCCEEEEecCCccccccccccc
Confidence 356889999999999999999998732 2567999999999999999999987 5679999999988542 234
Q ss_pred CCCCCCCceeEeCCCcccccCCc----ccC-----CCccCCCCEEEEEEeCCCceEEEEECCeeeeeeeecccccCCCCc
Q 001040 177 GVGDADDSYAFDGRRVKKWNKEA----EPY-----GQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFG 247 (1178)
Q Consensus 177 gVG~d~~SyGYdG~~G~~~h~~~----~~Y-----G~~f~~GDVIGCgIDld~GtI~FtkNG~~LGvAFe~I~~~~~~~~ 247 (1178)
.+|.+..||+|+..++.+||++. ..| ++.+..||+|||.||++.|+|+||+||+.++.+|.++. +.+
T Consensus 118 ~~G~~~~sw~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~rIGV~LD~e~G~lSFy~ng~~l~~aF~~~~----~~~ 193 (226)
T 2afj_A 118 LLGSNSESWGWDIGRGKLYHQSKGLEAPQYPAGPQGEQLVVPERLLVVLDMEEGTLGYSIGGTYLGPAFRGLK----GRT 193 (226)
T ss_dssp CCCCSCEEEEEEGGGTSTTSSSSCCSCSSSSCCSGGGGSCCSSCEEEEEETTTTEEEEESTTCSCSTTHHHHH----HHC
T ss_pred cccCCCCcEEEEcCCCeEEECccccCcccccccccCCcCCCCCEEEEEEECCCCEEEEEECCeEeEEEEEcCC----CCE
Confidence 57999999999987677887653 224 34578999999999999999999999999999999865 268
Q ss_pred EEEEEEeC-CCCEEEEecCC
Q 001040 248 YYPAVSLS-QGERCVLNFGA 266 (1178)
Q Consensus 248 lYPAVSl~-~g~~V~vNFG~ 266 (1178)
+||+|++. .+..+++||-+
T Consensus 194 L~P~f~l~~g~~~v~l~~~~ 213 (226)
T 2afj_A 194 LYPSVSAVWGQCQVRIRYMG 213 (226)
T ss_dssp CEEEEEECCTTSCCEEEEES
T ss_pred EEEEEEcccCCCEEEEEEcC
Confidence 99999985 45567776543
No 6
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=99.74 E-value=2.2e-15 Score=186.47 Aligned_cols=251 Identities=22% Similarity=0.336 Sum_probs=199.4
Q ss_pred cccccchHHHHHHHHHhhhhcccCCC-CCCCchhHHHhhHHHHHHHHHHhhcCC-cccCcchhHHHHHHHHHHh--c---
Q 001040 859 SVFIYIPEFYLEALVDCFHVLRKSDP-PFVPSTIFIKQGLASFVTFVVTHFNDP-RISSADLRDLLLQSISVLV--Q--- 931 (1178)
Q Consensus 859 ~lF~fvPefYle~l~~~~h~lr~~~~-p~~~~~~~~~~~l~~~~~fL~~hf~D~-RIv~~d~kd~llq~l~~l~--~--- 931 (1178)
..|+++||||||.++|.|+-++++.| |+++ ...+..+++|+..++..| +|-||.+|.-|++.|.... .
T Consensus 528 ~~f~~lPE~~iEdi~d~~~F~~r~~p~~l~~-----~~~l~~~v~f~i~fl~s~~~IkNP~LraklvevL~~~~~P~~~~ 602 (968)
T 3m62_A 528 VPFKYYPEFVVEGPVNYSLYISKYQTSPIFR-----NPRLGSFVEFTTMVLRCPELVSNPHLKGKLVQLLSVGAMPLTDN 602 (968)
T ss_dssp TTGGGSBTHHHHHHHHHHHHHTTCTTCTTTT-----CTTHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHHHSCCTTS
T ss_pred hHHhhCcHHHHHhHHHHHHHHHHcCCCcccc-----ccchhHHHHHHHHHhCCccccCCHHHHHHHHHHHHhcccccccC
Confidence 36999999999999999999999765 4432 357889999999999999 7889999999999998642 1
Q ss_pred cHHH-HHHHhccHHHHHhhHHHhhhcc------------CCCCcc--hhhHHHHHhhcCCCccccCCCCCCCchHHHHHH
Q 001040 932 YKDY-LAAFESNEAATLRLPKALISAF------------DNRSWI--PVTNILLRLCKGHGFGSSKHGESSSSSVIFQRL 996 (1178)
Q Consensus 932 ~~~~-l~a~E~~~~a~~~~v~~ll~~~------------d~r~W~--~~~~iLlR~~~G~GF~~~k~~~~~~~S~~fQ~~ 996 (1178)
.|.. ...||+++-++..|+.+||+-| ..|+++ +...||-.+|++ .+.+++.
T Consensus 603 ~~g~~~~~f~~~~la~~~L~~aLm~fYvdvE~TG~~~qFYdKFn~R~~I~~Ilk~LW~~--------------~~~yr~~ 668 (968)
T 3m62_A 603 SPGFMMDIFEHDELVNKNLLYALLDFYVIVEKTGSSSQFYDKFNSRYSISIILEELYYK--------------IPSYKNQ 668 (968)
T ss_dssp CCCTTHHHHHHCHHHHHHHHHHHHHHHHHGGGCCSCCSSSCHHHHHHHHHHHHHHHHHH--------------CHHHHHH
T ss_pred CccHHHHHHhcCHHHHHHHHHHHHHHHhhhhccCCcchHHHhhhhHHHHHHHHHHHHhc--------------CHHHHHH
Confidence 1333 6789999999999999999987 789999 778999999971 3455555
Q ss_pred HHHHHhcCCcchHHHHHHHhhhhchhHHHHHHHHHHHHhhh------------cc----hh------hhhhhhhhhhHhH
Q 001040 997 LREACINDEGLFSTFLNRLFNTLSWTMTEFSISIREMQEKY------------QV----SE------FQQKKCCVIFDLS 1054 (1178)
Q Consensus 997 l~e~l~~~~~~~~~FLn~~ln~LNWa~sEF~~~~qEiq~~~------------~v----~~------~qqr~C~~~FeLs 1054 (1178)
+...-.++++++-.|+|.++|-.+|-+-|-...++||++-+ .. ++ ..+|.|.-.+.|+
T Consensus 669 l~~~a~~~~~~FvrFvNlLiND~tyLLDEsL~~L~~I~~~Q~e~~~~~~~~~~~~ee~~~~~~~~l~~~er~a~s~~~La 748 (968)
T 3m62_A 669 LIWQSQNNADFFVRFVARMLNDLTFLLDEGLSNLAEVHNIQNELDNRARGAPPTREEEDKELQTRLASASRQAKSSCGLA 748 (968)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccchhHHHHHHHHHHHHHhhhHHHHHhH
Confidence 55444578999999999999999999999999988876610 00 11 1236799999999
Q ss_pred HhHHHHHHHHhhhcccccccCchhhHHHHHHHHHHHHhhccCccchhhHHHHhhccCCCccccchhhhhHHHHHHHHHHh
Q 001040 1055 CNLTRVLEFCTHEIPQAFLSGTDTNLRRLTELIVFILNHVTSAADAEFFDLSLRRHGQSLEKVNRGMILAPLVGIILNLL 1134 (1178)
Q Consensus 1055 vsL~RvLE~~~~~~P~~fl~~~~~~l~Rl~ql~~~VLnr~t~~~~~~~f~~~l~~~~~~le~v~~~~ilaa~~GILl~L~ 1134 (1178)
..-++.|+++|..+|+.|+. +|+ ..||+..++..|.+..-+ .|. +.+++-+ .-=..+--.+|..++.|.+||-
T Consensus 749 ~etv~ml~~~T~~i~~~F~~-pei-v~RlA~MLnynL~~LvGP-k~~--~LKVknp--ekY~F~Pk~lL~~i~~IYlnL~ 821 (968)
T 3m62_A 749 DKSMKLFEIYSKDIPAAFVT-PEI-VYRLASMLNYNLESLVGP-KCG--ELKVKDP--QSYSFNPKDLLKALTTVYINLS 821 (968)
T ss_dssp HHHHHHHHHHHHHCGGGGCS-HHH-HHHHHHHHHHHHHHHHSH-HHH--TCCCSCG--GGGTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhchhhcc-HHH-HHHHHHHHHHHHHHhcCc-ccc--ccccCCH--hhcCCCHHHHHHHHHHHHhhcc
Confidence 99999999999999999997 365 899999999999998854 332 2222211 2223455678999999999997
Q ss_pred h
Q 001040 1135 D 1135 (1178)
Q Consensus 1135 ~ 1135 (1178)
.
T Consensus 822 ~ 822 (968)
T 3m62_A 822 E 822 (968)
T ss_dssp T
T ss_pred C
Confidence 5
No 7
>2vok_A 52 kDa RO protein; polymorphism, immune system, metal-binding, tripartite motif (TRIM) protein, SPRY systemic lupus erythematosus, zinc, B30.2; 1.30A {Mus musculus} PDB: 2vol_B* 2iwg_B*
Probab=99.35 E-value=9.3e-12 Score=130.09 Aligned_cols=144 Identities=15% Similarity=0.075 Sum_probs=109.5
Q ss_pred ceEEeCcccCCCCeEEeCCCcEEEec-------------CceeeEEeCceeecCEEEEEEEEEecCeEEEEEecCCCCCC
Q 001040 107 HIVGLEESSICGDVRIAKLPLLVESL-------------AMFSSARANVCVWKGKWMYEVTLETSGVQQLGWATLSCPFT 173 (1178)
Q Consensus 107 ~~V~LD~~~~~~~L~LS~d~L~V~g~-------------s~~ssVRAn~~V~sGkwYFEVtI~s~G~vrIGwAt~~~~l~ 173 (1178)
..|+||++++++.+.||+|+.+|... ..+.+|.++.++++|++||||++...+.+.||+|..+.+..
T Consensus 9 ~~vtLDp~TA~~~L~lSed~~~v~~~~~~q~~p~~peRF~~~~~VLg~~~fsSGrHYWEVev~~~~~w~vGV~~~si~Rk 88 (188)
T 2vok_A 9 VHITLDRNTANSWLIISKDRRQVRMGDTHQNVSDNKERFSNYPMVLGAQRFSSGKMYWEVDVTQKEAWDLGVCRDSVQRK 88 (188)
T ss_dssp CCCCBCGGGSCTTEEECTTSCEEEECSSCCCCCCCTTSCCSSSEEEBSCCBSSSEEEEEEECTTCSCEEEEEEETTCCCS
T ss_pred cceEECCccCCCCeEECCCCCEEEECCccCCCCCCccceeeeccccccCcccCCCeEEEEEecCCceEEEEEeeCCcCCC
Confidence 35789999999999999999998532 24678999999999999999999887789999999988776
Q ss_pred CCCCCCCCCCceeEeCCC--cccccCCcccCCCccCCCCEEEEEEeCCCceEEEEEC--C-eeeeeeeecccccCCCCcE
Q 001040 174 DHKGVGDADDSYAFDGRR--VKKWNKEAEPYGQSWVAGDIIGCCIDLDSDEISFYRN--G-VSLGVAFSGIRKMGPGFGY 248 (1178)
Q Consensus 174 ~~~gVG~d~~SyGYdG~~--G~~~h~~~~~YG~~f~~GDVIGCgIDld~GtI~FtkN--G-~~LGvAFe~I~~~~~~~~l 248 (1178)
....+|.+..+|+..-.. ...|++.....- .-.....||+.+|+++|+|+||-. + ..+ -.|.... -.+++
T Consensus 89 g~~~~~~~~~~W~l~~~~~~y~~~~~~~~~l~-~~~~~~rVGVfLDye~G~lSFY~v~~~~~~I-~tF~~~~---Fs~pL 163 (188)
T 2vok_A 89 GQFSLSPENGFWTIWLWQDSYEAGTSPQTTLH-IQVPPCQIGIFVDYEAGVVSFYNITDHGSLI-YTFSECV---FAGPL 163 (188)
T ss_dssp SCCCCSTTTTEEEEEEETTEEEECSSSCEEEC-CSSCCSEEEEEEETTTTEEEEEETTTTTEEE-EEECSCC---CCSCE
T ss_pred CccccCCCCCEEEEEEECCEEEEEeCCccCEe-cCCCCCEEEEEEEcCCCEEEEEECCCCCeee-EEecCCC---CCCCE
Confidence 555678889999985433 344554322221 123568999999999999999963 3 333 3566411 14799
Q ss_pred EEEEEeC
Q 001040 249 YPAVSLS 255 (1178)
Q Consensus 249 YPAVSl~ 255 (1178)
||++++.
T Consensus 164 ~P~F~~~ 170 (188)
T 2vok_A 164 RPFFNVG 170 (188)
T ss_dssp EEEEECC
T ss_pred EeEEEec
Confidence 9999985
No 8
>2wl1_A Pyrin, marenostrin; amyloidosis, polymorphism, cytoskeleton, actin-binding inflammatory response, metal-binding, signaling protein; 1.35A {Homo sapiens}
Probab=99.33 E-value=8.7e-12 Score=130.46 Aligned_cols=144 Identities=13% Similarity=0.048 Sum_probs=107.9
Q ss_pred ceEEeCcccCCCCeEEeCCCcEEEec-------------CceeeEEeCceeecCEEEEEEEEEecCeEEEEEecCCCCCC
Q 001040 107 HIVGLEESSICGDVRIAKLPLLVESL-------------AMFSSARANVCVWKGKWMYEVTLETSGVQQLGWATLSCPFT 173 (1178)
Q Consensus 107 ~~V~LD~~~~~~~L~LS~d~L~V~g~-------------s~~ssVRAn~~V~sGkwYFEVtI~s~G~vrIGwAt~~~~l~ 173 (1178)
..++||++++++++.||+|+.+|... ..+.+|.++.++++|++||||++...+.+.||+|..+.+..
T Consensus 13 ~~~tLDp~TA~~~L~lSed~~~v~~~~~~q~~p~~p~RF~~~~~VLg~~~fssGrHYWEVev~~~~~w~vGV~~~s~~Rk 92 (191)
T 2wl1_A 13 VNVILDAETAYPNLIFSDDLKSVRLGNKWERLPDGPQRFDSCIIVLGSPSFLSGRRYWEVEVGDKTAWILGACKTSISRK 92 (191)
T ss_dssp CCCEECTTTSCTTEEECTTSCEEEECCTTCCCCCCTTSCSSSCCEEEECCBCSSEEEEEEECTTCSCEEEEEEETTCCSS
T ss_pred eeeEECCccCCCceEECCCCcEEEECCcCCCCCCCcccccccccccCcccccCCCEEEEEEeCCCCEEEEEEeeCCcCCC
Confidence 36899999999999999999998632 24678999999999999999999887889999999988765
Q ss_pred CCCCCCCCCCceeEe---CCCcccccCCcccCCCccCCCCEEEEEEeCCCceEEEEE--CCeeeeeeeecccccCCCCcE
Q 001040 174 DHKGVGDADDSYAFD---GRRVKKWNKEAEPYGQSWVAGDIIGCCIDLDSDEISFYR--NGVSLGVAFSGIRKMGPGFGY 248 (1178)
Q Consensus 174 ~~~gVG~d~~SyGYd---G~~G~~~h~~~~~YG~~f~~GDVIGCgIDld~GtI~Ftk--NG~~LGvAFe~I~~~~~~~~l 248 (1178)
....+|.+..+|+.. ++....+|+.....- .-.....||+.+|++.|+|+||- ++..+ ..|.... -.+++
T Consensus 93 g~~~~~~~~~~W~l~~~~~~~y~~~~~~~~~l~-~~~~~~rVGVfLDye~G~lSFY~v~~~~~i-~tF~~~~---Fs~pl 167 (191)
T 2wl1_A 93 GNMTLSPENGYWVVIMMKENEYQASSVPPTRLL-IKEPPKRVGIFVDYRVGSISFYNVTARSHI-YTFASCS---FSGPL 167 (191)
T ss_dssp SCCCCCGGGTEEEEEEEETTEEEECCSSCEECC-CSSCCSEEEEEEETTTTEEEEEETTTTEEE-EEECCCC---CCSCE
T ss_pred CccccCCCCCEEEEEEeCCCEEEEEcCCCccCc-cccCCcEEEEEEEcCCCEEEEEECCCCcce-EEeCCCC---CCCCE
Confidence 544567777889875 333334454322221 12356899999999999999996 34433 3565411 14799
Q ss_pred EEEEEeC
Q 001040 249 YPAVSLS 255 (1178)
Q Consensus 249 YPAVSl~ 255 (1178)
||++++.
T Consensus 168 ~P~F~~~ 174 (191)
T 2wl1_A 168 QPIFSPG 174 (191)
T ss_dssp EEEEECC
T ss_pred EeEEEcc
Confidence 9999985
No 9
>2fbe_A Predicted: similar to RET finger protein-like 1; dimer, jellyroll beta-sandwich fold, unknown function; 2.52A {Homo sapiens} SCOP: b.29.1.22
Probab=99.30 E-value=2.7e-11 Score=127.79 Aligned_cols=144 Identities=15% Similarity=0.088 Sum_probs=107.3
Q ss_pred ceEEeCcccCCCCeEEeCCCcEEEec-------------CceeeEEeCceeecCEEEEEEEEEecCeEEEEEecCCCCCC
Q 001040 107 HIVGLEESSICGDVRIAKLPLLVESL-------------AMFSSARANVCVWKGKWMYEVTLETSGVQQLGWATLSCPFT 173 (1178)
Q Consensus 107 ~~V~LD~~~~~~~L~LS~d~L~V~g~-------------s~~ssVRAn~~V~sGkwYFEVtI~s~G~vrIGwAt~~~~l~ 173 (1178)
..++||++++++++.||+|+.+|... ..+.+|.++.++++|++||||++...+.+.||+|..+.+..
T Consensus 10 ~~~tLDp~TA~~~L~lSed~~~v~~~~~~q~~p~~peRF~~~~~VLg~~~fsSGrHYWEVev~~~~~w~vGV~~~si~Rk 89 (201)
T 2fbe_A 10 VDMTFDVDTANNYLIISEDLRSFRSGDLSQNRKEQAERFDTALCVLGTPRFTSGRHYWEVDVGTSQVWDVGVCKESVNRQ 89 (201)
T ss_dssp CCCCEETTTCCTTEEECTTSSEEEECSSCCCCCCCTTSCSSSCEEEESCCBSSSEEEEEEECTTCSEEEEEEEETTSCCS
T ss_pred EeEEECcccCCCceEECCCCcEEEECCccCCCCCCccceeeccceecCccccCCceEEEEEeCCCCEEEEEEeeCccCCC
Confidence 35899999999999999999998632 24678999999999999999999888889999999988766
Q ss_pred CCCCCCCCCCceeEeCCC---cccccCCcccCCCccCCCCEEEEEEeCCCceEEEEEC--CeeeeeeeecccccCCCCcE
Q 001040 174 DHKGVGDADDSYAFDGRR---VKKWNKEAEPYGQSWVAGDIIGCCIDLDSDEISFYRN--GVSLGVAFSGIRKMGPGFGY 248 (1178)
Q Consensus 174 ~~~gVG~d~~SyGYdG~~---G~~~h~~~~~YG~~f~~GDVIGCgIDld~GtI~FtkN--G~~LGvAFe~I~~~~~~~~l 248 (1178)
....+|.+..+|+..-.. ...|++..... ..-.....||+.+|++.|+|+||-. +..+ ..|.... -.+++
T Consensus 90 g~~~~~~~~g~W~l~~~~~~~y~~~~~~~~~l-~~~~~~~rVGVfLDye~G~lSFY~v~~~~~i-~tF~~~~---Fs~pL 164 (201)
T 2fbe_A 90 GKIELSSEHGFLTVGCREGKVFAASTVPMTPL-WVSPQLHRVGIFLDVGMRSIAFYNVSDGCHI-YTFIEIP---VCEPW 164 (201)
T ss_dssp SCCCCCTTTTEEEEEEETTTEEEECSSSCEEE-CCCTTCCEEEEEEETTTTEEEEEETTTTEEE-EEECSCC---CSSCE
T ss_pred CcccccCCCCEEEEEEeCCCEEEEEcCCcccC-ccCCCCCEEEEEEEcCCCEEEEEeCCCCcee-EEEcCCC---CCCCE
Confidence 544567777899875332 22344322221 1124567999999999999999973 3333 3565421 13799
Q ss_pred EEEEEeC
Q 001040 249 YPAVSLS 255 (1178)
Q Consensus 249 YPAVSl~ 255 (1178)
||++++.
T Consensus 165 ~P~F~~~ 171 (201)
T 2fbe_A 165 RPFFAHK 171 (201)
T ss_dssp EEEEEEE
T ss_pred EeEEEec
Confidence 9999985
No 10
>3kb5_A Tripartite motif-containing protein 72; B30.2, gustavus, SPRY, TRIM21, TRIM72, PRY, high resolution, Mg53; 1.50A {Homo sapiens}
Probab=99.25 E-value=7.3e-11 Score=123.64 Aligned_cols=146 Identities=16% Similarity=0.128 Sum_probs=106.0
Q ss_pred CceEEeCcccCCCCeEEeCCCcEEEec--------------CceeeEEeCceeecCEEEEEEEEEecCeEEEEEecCCCC
Q 001040 106 PHIVGLEESSICGDVRIAKLPLLVESL--------------AMFSSARANVCVWKGKWMYEVTLETSGVQQLGWATLSCP 171 (1178)
Q Consensus 106 p~~V~LD~~~~~~~L~LS~d~L~V~g~--------------s~~ssVRAn~~V~sGkwYFEVtI~s~G~vrIGwAt~~~~ 171 (1178)
+..++||++++++.+.||+|+.+|... ..+.+|.+..++++|++||||++...+.+.||++..+.+
T Consensus 11 ~~~vtLDp~TA~~~L~lSed~~~v~~~~~~~q~~p~~p~RF~~~~~VLg~~~fssGrhYWEVev~~~~~W~lGV~~~s~~ 90 (193)
T 3kb5_A 11 LEELTFDPSSAHPSLVVSSSGRRVECSEQKAPPAGEDPRQFDKAVAVVAHQQLSEGEHYWEVDVGDKPRWALGVIAAEAP 90 (193)
T ss_dssp BCCCCBCTTTSCTTEEEETTTTEEEECCSCCCCCCSCTTSCSSSCEEEBSCCBCSSEEEEEEECTTCSSEEEEEEETTSC
T ss_pred cccEEECCCCCCCCEEECCCCCEEEECCcCCCCCCCCccccccccEEccCCcccCCCEEEEEEeCcCceEEEEEeeCCcC
Confidence 456899999999999999999988642 135789999999999999999998888899999999886
Q ss_pred CCCCCCCCCCCCceeEeCCCc---ccccCCccc--CCCccCCCCEEEEEEeCCCceEEEEE--CC--eeeeeeeeccccc
Q 001040 172 FTDHKGVGDADDSYAFDGRRV---KKWNKEAEP--YGQSWVAGDIIGCCIDLDSDEISFYR--NG--VSLGVAFSGIRKM 242 (1178)
Q Consensus 172 l~~~~gVG~d~~SyGYdG~~G---~~~h~~~~~--YG~~f~~GDVIGCgIDld~GtI~Ftk--NG--~~LGvAFe~I~~~ 242 (1178)
.......+.+..+|+..-.++ ..|++.... ...+-..-..||+.+|++.|+|+||- ++ ..+=-.|....
T Consensus 91 Rkg~~~~~~~~~~W~l~~~~~~~y~~~~~~~~~~~l~~~~~~~~rVGVfLDye~G~lSFY~v~~~~~~s~I~tF~~~F-- 168 (193)
T 3kb5_A 91 RRGRLHAVPSQGLWLLGLREGKILEAHVEAKEPRALRSPERRPTRIGLYLSFGDGVLSFYDASDADALVPLFAFHERL-- 168 (193)
T ss_dssp CSSSCCCSGGGTEEEEEEETTTEEEECCSSSSCEECCCCSSCCSEEEEEEETTTTEEEEEECCSTTCCEEEEEECSCC--
T ss_pred cCCCcCCCCCCCEEEEEEeCCCEEEEEeCCCccEEEeecCCCCCEEEEEEEcCCCEEEEEeCCCCCCceEEEEeCCCC--
Confidence 654434555667898753332 234443222 21112345699999999999999996 21 23323565422
Q ss_pred CCCCcEEEEEEeC
Q 001040 243 GPGFGYYPAVSLS 255 (1178)
Q Consensus 243 ~~~~~lYPAVSl~ 255 (1178)
.+++||++++.
T Consensus 169 --t~pl~P~F~~~ 179 (193)
T 3kb5_A 169 --PRPVYPFFDVC 179 (193)
T ss_dssp --CSCEEEEEECC
T ss_pred --CCCeECEEEcc
Confidence 47999999874
No 11
>3uv9_A TRIM5alpha, tripartite motif-containing protein 5; domain SWAP, antiretroviral, HIV capsid, ligase; 1.55A {Macaca mulatta}
Probab=99.25 E-value=2.9e-11 Score=126.03 Aligned_cols=145 Identities=17% Similarity=0.148 Sum_probs=104.2
Q ss_pred ceEEeCcccCCCCeEEeCCCcEEEecCceeeEEeCceeecCEEEEEEEEEecCeEEEEEecCCCCCCC-----CCCCCCC
Q 001040 107 HIVGLEESSICGDVRIAKLPLLVESLAMFSSARANVCVWKGKWMYEVTLETSGVQQLGWATLSCPFTD-----HKGVGDA 181 (1178)
Q Consensus 107 ~~V~LD~~~~~~~L~LS~d~L~V~g~s~~ssVRAn~~V~sGkwYFEVtI~s~G~vrIGwAt~~~~l~~-----~~gVG~d 181 (1178)
..|+||+++++. +.||+|+.+|+. ....+|.+..++++|++||||++...+.+.||+|....+... ...+|.+
T Consensus 12 v~vTLDp~TA~~-l~lSed~r~Vr~-~~~~~VLG~~~ftsGrHYWEVeV~~~~~W~vGV~~~~~~r~~~~~~~~~~~~~~ 89 (186)
T 3uv9_A 12 VDVTLATNNISH-AVIAEDKRQVSS-RAGTGVLGSQSITSGKHYWEVDVSKKSAWILGVCAGFQSDAMYNIEQNENYQPK 89 (186)
T ss_dssp CCCCCCCCSSCC-CEECTTSSCEEC-CCSSCEECSSCBCSSEEEEEEECTTCSCEEEEEESCSTTTTTTTHHHHTCCCGG
T ss_pred EEeEeCCCCcCC-ceECCCCCEEee-cCCCcCcCCCCCCCCCEEEEEEEcCCCcEEEEEEEEEecccccccCCCcccCCC
Confidence 458899999985 889999999964 455789999999999999999998888999999987664422 2246777
Q ss_pred CCceeEeCCCc---ccccCCc--ccCCC------ccCCCCEEEEEEeCCCceEEEEE--CCeeeeeeeecccccCCCCcE
Q 001040 182 DDSYAFDGRRV---KKWNKEA--EPYGQ------SWVAGDIIGCCIDLDSDEISFYR--NGVSLGVAFSGIRKMGPGFGY 248 (1178)
Q Consensus 182 ~~SyGYdG~~G---~~~h~~~--~~YG~------~f~~GDVIGCgIDld~GtI~Ftk--NG~~LGvAFe~I~~~~~~~~l 248 (1178)
..+|+..-..+ ..||+.. ...++ .-.....||+.+|++.|+|+||- |...+-..|.... -.+++
T Consensus 90 ~g~W~l~~~~~~~y~~~~~~~~~~~~~~~~~~l~~~~~p~rVGVfLDye~G~lSFYnv~d~~~lI~tF~~~~---Fs~pL 166 (186)
T 3uv9_A 90 YGYWVIGLQEGVKYSVFQDGSSHTPFAPFIVPLSVIICPDRVGVFVDYEACTVSFFNITNHGFLIYKFSQCS---FSKPV 166 (186)
T ss_dssp GTEEEEEEETTTEEEEEECCCTTSTTSCEEEECCCSSCCSEEEEEEETTTTEEEEEETTTTTEEEEEECSCC---CSSCB
T ss_pred CCEEEEEECCCCEEEEEeCCCccccCCCccCcccccccCCEEEEEeecCCCEEEEEeCCCCceEEEEeCCcC---CCCCE
Confidence 88998753332 3455432 12222 22457899999999999999994 3222223564321 13789
Q ss_pred EEEEEeCC
Q 001040 249 YPAVSLSQ 256 (1178)
Q Consensus 249 YPAVSl~~ 256 (1178)
||++++..
T Consensus 167 ~P~F~~~~ 174 (186)
T 3uv9_A 167 FPYLNPRK 174 (186)
T ss_dssp EEEEECTT
T ss_pred EeEEECCC
Confidence 99999853
No 12
>4b3n_A Maltose-binding periplasmic protein, tripartite motif-containing protein 5; sugar binding protein-ligase complex; HET: MAL MES; 3.30A {Escherichia coli} PDB: 2lm3_A
Probab=98.80 E-value=2.4e-08 Score=119.89 Aligned_cols=146 Identities=16% Similarity=0.187 Sum_probs=99.9
Q ss_pred CceEEeCcccCCCCeEEeCCCcEEEe---------------------cCceeeEEeCceeecCEEEEEEEEEecCeEEEE
Q 001040 106 PHIVGLEESSICGDVRIAKLPLLVES---------------------LAMFSSARANVCVWKGKWMYEVTLETSGVQQLG 164 (1178)
Q Consensus 106 p~~V~LD~~~~~~~L~LS~d~L~V~g---------------------~s~~ssVRAn~~V~sGkwYFEVtI~s~G~vrIG 164 (1178)
-..|+||++|++ .+.||+|+.+|.. +..+.+|.+..++++|++||||+|...+.+.||
T Consensus 409 ~v~vtldp~ta~-~l~~s~d~r~v~~~~~~~~~~~p~~~~~~~~~~rF~~~~~VLg~~~f~sGrhyWEV~v~~~~~w~~G 487 (602)
T 4b3n_A 409 WVDVTLATNNIS-HAVIAEDKRQVSSRNPQIMYQAPGTLFTFPSLTNFNYCTGVLGSQSITSGKHYWEVDVSKKSAWILG 487 (602)
T ss_dssp BCCCCEECCSCC-SCEECTTSSEEECCCC--------------------CCCCEEESSCBSSSEEEEEEECTTCSCEEEE
T ss_pred EEEEEeCCCCCC-ceeEecCCCEEEECCccccccCCCccCCCCCcccCCCCCEeccCCCCCCEEEEEEEEECCCeeEEEE
Confidence 347999999998 5889999999953 124567999999999999999999888899999
Q ss_pred EecCCCCCCC-----CCCCCCCCCceeEeCCCc---ccccCCcc--cCCCc------cCCCCEEEEEEeCCCceEEEEE-
Q 001040 165 WATLSCPFTD-----HKGVGDADDSYAFDGRRV---KKWNKEAE--PYGQS------WVAGDIIGCCIDLDSDEISFYR- 227 (1178)
Q Consensus 165 wAt~~~~l~~-----~~gVG~d~~SyGYdG~~G---~~~h~~~~--~YG~~------f~~GDVIGCgIDld~GtI~Ftk- 227 (1178)
+|.......+ ...++....+|+..-..+ ..||+... ..++. -..-..||+.+|++.|+|+||-
T Consensus 488 v~~~~~~~~~~~~~~~~~~~~~~g~w~~~~~~~~~y~~~~~~~~~~~~~~~~~~l~~~~~~~rvgv~ld~~~g~~sFy~~ 567 (602)
T 4b3n_A 488 VCAGFQSDAMYNIEQNENYQPKYGYWVIGLQEGVKYSVFQDGSSHTPFAPFIVPLSVIICPDRVGVFVDYEACTVSFFNI 567 (602)
T ss_dssp EECCCCTTTSSTHHHHCCCCGGGTEEEEEEETTTEEEEEECCCSSCCSSCEEEECCCSSCCSEEEEEEETTTTEEEEEET
T ss_pred EeeccccccccccCCCcccCCCCcEEEEEEecCCeEEEEeCCCcccccCCcccccccCCCCCEEEEEEecCCCEEEEEeC
Confidence 9976543221 112444556888753333 34444321 22221 1234689999999999999995
Q ss_pred -C-CeeeeeeeecccccCCCCcEEEEEEeCC
Q 001040 228 -N-GVSLGVAFSGIRKMGPGFGYYPAVSLSQ 256 (1178)
Q Consensus 228 -N-G~~LGvAFe~I~~~~~~~~lYPAVSl~~ 256 (1178)
+ |..+ -.|.... -.+++||.+++..
T Consensus 568 ~~~~~~i-~tf~~~~---f~~~l~P~f~~~~ 594 (602)
T 4b3n_A 568 TNHGFLI-YKFSQCS---FSKPVFPYLNPRK 594 (602)
T ss_dssp TTTTEEE-EEECSCC---CCSCBEEEEECTT
T ss_pred CCCceee-EeCCCcC---CCCCEeCeEECCC
Confidence 2 3333 3454321 1379999999854
No 13
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.92 E-value=0.00012 Score=75.71 Aligned_cols=132 Identities=22% Similarity=0.315 Sum_probs=94.7
Q ss_pred CCCCeEEeCCCcEEEec---Cce--eeEEeCceeecCEEEEEEEEEe-----cCeEEEEEecCCC-C--CCCCCCCCCCC
Q 001040 116 ICGDVRIAKLPLLVESL---AMF--SSARANVCVWKGKWMYEVTLET-----SGVQQLGWATLSC-P--FTDHKGVGDAD 182 (1178)
Q Consensus 116 ~~~~L~LS~d~L~V~g~---s~~--ssVRAn~~V~sGkwYFEVtI~s-----~G~vrIGwAt~~~-~--l~~~~gVG~d~ 182 (1178)
+..++++++++.++... +.| +-|.++.++..|. .|+|+|.. .|.++||+++.+- . +... ...-..
T Consensus 13 hG~nI~L~~~~~~A~R~~~~~~f~~givFS~rPl~~~E-~~~v~I~~~~~~wsG~l~~GvT~~dP~~l~lP~~-~~~L~~ 90 (170)
T 2e63_A 13 TGRLVSLSACGRTARRQQPGQEFNHGLVLSREPLRDGR-VFTVRIDRKVNSWSGSIEIGVTALDPSVLDFPSS-ATGLKG 90 (170)
T ss_dssp CCSSEEECSSSCEEEESCTTTCSCSCCEEEEEEECTTC-EEEEEEEEECCSSCCCCEEEEESSCTTSCCCCSS-GGGCCS
T ss_pred cCCCeEECCCCeEEEeCCCCcccCceEEEECCCCCCCC-EEEEEEEeecCCcceeEEEEEEccChhhccCCCC-hhhCCC
Confidence 45689999999999875 333 5677888888764 35666653 3899999998753 2 2211 122234
Q ss_pred CceeEeCCCcccccCC--cccCCC---ccCCCCEEEEEEeCCCceEEEEECCeeeeeeeecccccCCCCcEEEEEEeCC
Q 001040 183 DSYAFDGRRVKKWNKE--AEPYGQ---SWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFGYYPAVSLSQ 256 (1178)
Q Consensus 183 ~SyGYdG~~G~~~h~~--~~~YG~---~f~~GDVIGCgIDld~GtI~FtkNG~~LGvAFe~I~~~~~~~~lYPAVSl~~ 256 (1178)
.+|.+.+..... ++. .+.||. +...||+||..++ .+|+++|++||...|+++.+++ .++|+.|-++.
T Consensus 91 ~~Wv~~~~~v~~-ng~~~~e~~~~~l~~l~~Gd~ig~~~~-~~G~l~~~iNg~~~g~~~~~ip-----~~LwavvDvyG 162 (170)
T 2e63_A 91 GSWVVSGCSVLR-DGRSVLEEYGQDLDQLGEGDRVGVERT-VAGELRLWVNGRDCGVAATGLP-----PRVWAVVDLYG 162 (170)
T ss_dssp SEEEESSSEEEE-SSCEEEESCSSCGGGCCSSCCEEEEEC-TTSCEEEEESSCEEEEEECCCC-----SCEEEEEECCT
T ss_pred CeEEEecccccc-CCcccchhccccccccCCCCEEEEEEc-CCcEEEEEECCccceeeEcCCC-----CcEEEEEEccC
Confidence 688887743221 222 356775 6679999999998 5799999999999999998775 48999999974
No 14
>2yue_A Protein neuralized; structure genomics, NEUZ(NHR) domain, structural genomics, NPPSFA; NMR {Drosophila melanogaster}
Probab=96.93 E-value=0.0099 Score=61.28 Aligned_cols=137 Identities=12% Similarity=0.148 Sum_probs=92.1
Q ss_pred EEeCcccCCCCeEEeCCCcEEEecCce--eeEEeCceeecCEEEEEEEEEe-----cCeEEEEEecCCC-CCCCCCC---
Q 001040 109 VGLEESSICGDVRIAKLPLLVESLAMF--SSARANVCVWKGKWMYEVTLET-----SGVQQLGWATLSC-PFTDHKG--- 177 (1178)
Q Consensus 109 V~LD~~~~~~~L~LS~d~L~V~g~s~~--ssVRAn~~V~sGkwYFEVtI~s-----~G~vrIGwAt~~~-~l~~~~g--- 177 (1178)
..+-+ .+..++++++++.++.....| +-|.++.++..|. .|+|+|.. .|.++||+++.+- .+...-+
T Consensus 9 l~FH~-~~G~nI~L~~~~~~A~R~~sf~~givFS~RPl~~~E-~~~v~I~~~~~~wsG~l~~GvT~~dP~~l~~~lP~~a 86 (168)
T 2yue_A 9 LQFHS-VHGDNIRISRDGTLARRFESFCRAITFSARPVRINE-RICVKFAEISNNWNGGIRFGFTSNDPVTLEGTLPKYA 86 (168)
T ss_dssp CCEEE-EECTTEEECCSSCCEEECSCSSCCEEEESSCCCSSC-CEEEEEEECCSSSSSCCEEEEESSCGGGTTTCCCSSS
T ss_pred ccccc-ccCCCeEECCCCcEEEecccCCceEEEECCCCcCCC-EEEEEEEeecCCcceeEEEeeeecCHHHcCCCCCCcC
Confidence 44443 346789999999999876533 5677888987663 25666654 3799999998753 2211000
Q ss_pred ---CCCCCCceeEeCCCcccccCCcccCCCccCCCCEEEEEEeCCCceEEEEECCeeeeeeeecccccCCCCcEEEEEEe
Q 001040 178 ---VGDADDSYAFDGRRVKKWNKEAEPYGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFGYYPAVSL 254 (1178)
Q Consensus 178 ---VG~d~~SyGYdG~~G~~~h~~~~~YG~~f~~GDVIGCgIDld~GtI~FtkNG~~LGvAFe~I~~~~~~~~lYPAVSl 254 (1178)
+-.-...|+.. -.+.|+ ..||++|..++ .+|+++|.+||...|.++.+++ .+.++|+.|-+
T Consensus 87 ~~dL~~~~~~W~~~---------l~~~~~---~~g~~l~f~v~-~~G~l~~~iNg~~~g~~~~~V~---~~~pLwavvDv 150 (168)
T 2yue_A 87 CPDLTNRPGFWAKA---------LHEQYC---EKDNILYYYVN-GAGDVIYGINNEEKGVILTGID---TRSLLWTVIDI 150 (168)
T ss_dssp SSHHHHSTTBCCEE---------CCSTTC---CSSCEEEEEEC-TTSEEEEEESSCEEEEEEECCC---CSSCCEEEEEC
T ss_pred chHHhcCCCEEEEE---------eccccc---cCCCEEEEEEc-CCCEEEEEECCCccEEEEcCCC---CCCceEEEEEc
Confidence 00112333321 112343 67999999997 7899999999999999998875 35789999999
Q ss_pred CC-CCEEEEe
Q 001040 255 SQ-GERCVLN 263 (1178)
Q Consensus 255 ~~-g~~V~vN 263 (1178)
+. -.+|++-
T Consensus 151 yG~t~~V~il 160 (168)
T 2yue_A 151 YGNCTGIEFL 160 (168)
T ss_dssp CSSCSEEEEE
T ss_pred cCCeEEEEEe
Confidence 74 3566654
No 15
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=20.88 E-value=2.9e+02 Score=25.43 Aligned_cols=29 Identities=10% Similarity=0.329 Sum_probs=22.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhHHHHh
Q 001040 801 EQLKRLKEARNNYREEVIDCVRHCAWYRI 829 (1178)
Q Consensus 801 e~~~~l~~~~~vf~e~l~~~aR~~aW~r~ 829 (1178)
+..+.|...-+.|+..--...|+++|=+.
T Consensus 40 ~kt~~L~~~s~~F~~~A~~l~rkmwwkn~ 68 (91)
T 3hd7_A 40 DRADALQAGASQFETSAAKLKRKYWWKNL 68 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456776777899999999999999654
Done!