BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001041
(1178 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 776 bits (2005), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/1154 (36%), Positives = 652/1154 (56%), Gaps = 40/1154 (3%)
Query: 43 SVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTF---GDNQNNSETV 99
+V +F +A D M++G++ AI +G+ LPLM L+FGD+ ++F G+ NS +
Sbjct: 32 AVSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNM 91
Query: 100 DKVSKVAV-----------KFVYLGIGSG--IASFLQVTCWMITGERQATRIRGLYLKTI 146
+ K A+ + Y GIG+G I +++QV+ W + RQ +IR + I
Sbjct: 92 SEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAI 151
Query: 147 LRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLL 206
+ Q++ +FD + GE+ R++ D I + +G+K+G F Q MATF GGF+I F +GW L
Sbjct: 152 MNQEIGWFDVH-DVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKL 210
Query: 207 TLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAM 266
TLV+L+ P+L +S G+ A ++S + + AYAKA +V E+ + +IRTV +F G+K+ +
Sbjct: 211 TLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKEL 270
Query: 267 SNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNV 326
Y L A + G+++ + A I +G L+++ SYAL+ WYG L++ + Y+ GQV+ V
Sbjct: 271 ERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTV 330
Query: 327 MVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIEL 386
+VL G+ S+G+ASP + AF + AA+++F+ I+ KP ID++ G D+I+G++E
Sbjct: 331 FFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEF 390
Query: 387 RDVYFSYPARPNEQXXXXXXXXXXXXTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID 446
++++FSYP+R Q T ALVG SG GKST + L++R YDP G V ID
Sbjct: 391 KNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSID 450
Query: 447 GINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFID 506
G +++ ++++R+ IG+VSQEPVLF +I +NI YG++D T +EI A + ANA FI
Sbjct: 451 GQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIM 510
Query: 507 KLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALD 566
KLP DTLVGE G QLSGGQKQRIAIARA++++P+ILLLDEATSALD ESE VVQ ALD
Sbjct: 511 KLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALD 570
Query: 567 RIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANK 626
+ RTT+++AHRLSTVRNAD+IA G IVE+G H +L+ + +G Y +L+ Q A
Sbjct: 571 KAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMRE-KGIYFKLVMTQTAGN 629
Query: 627 ESEQTIDG-QRKSEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGLPSGQFAD 685
E E + + K EI P Q D
Sbjct: 630 EIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICG------------PHDQ--D 675
Query: 686 TALGEPAGPSQPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSV 745
L + +E P R+ LN E P + G A+ NG + P + ++ S V
Sbjct: 676 RKL----STKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKV 731
Query: 746 IETFFK--PPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEK 803
+ F PP +++S ++L++L LG SF+ Q + F AG L +R+R M F+
Sbjct: 732 VGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKS 791
Query: 804 VIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASW 863
++ +VSWFD+P++++GA+ RL+ DAA V+ G LA I QNI+ G+II+ W
Sbjct: 792 MLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGW 851
Query: 864 QLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEK 923
QL L++L ++P+I ++G +MK + G + K + E + ++A +A+ + RTV S E+K
Sbjct: 852 QLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQK 911
Query: 924 VMQLYKKKCEAPMKTGIRQGMVSXXXXXXXXXXXXXXXXXXXXXXXRLVEDGKATFSDVF 983
+Y + + P + +++ V LV TF +V
Sbjct: 912 FETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAACFRFGAYLVTQQLMTFENVL 971
Query: 984 KVFFSLTMTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRESKIDPSDESGTILEDVKGEI 1043
VF ++ + +ID G ++G +
Sbjct: 972 LVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNV 1031
Query: 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHIT 1103
+ V F YP+RP + V + L+L+++ G+T+ALVG SG GKSTVV LL+RFYDP AG +
Sbjct: 1032 QFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVF 1091
Query: 1104 LDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATE-AEIQAASEMANAH 1162
LDG EI++L ++WLR Q+G+VSQEP+LF+ +I NIAYG EI A++ AN H
Sbjct: 1092 LDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIH 1151
Query: 1163 KFICSLQQVRTSRL 1176
+FI SL +R+
Sbjct: 1152 QFIDSLPDKYNTRV 1165
Score = 403 bits (1035), Expect = e-112, Method: Compositional matrix adjust.
Identities = 229/608 (37%), Positives = 355/608 (58%), Gaps = 12/608 (1%)
Query: 30 HDSEKGKQTEKT--ESVP---FYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGD 84
HD ++ T++ E VP F+++ +S + ++G AI NG P +++F
Sbjct: 672 HDQDRKLSTKEALDEDVPPASFWRILKL-NSTEWPYFVVGIFCAIINGGLQPAFSVIFSK 730
Query: 85 LINTFGDNQNNSETVDKVSKV-AVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYL 143
++ F N ET + S + ++ F+ LGI S I FLQ + GE R+R +
Sbjct: 731 VVGVF-TNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVF 789
Query: 144 KTILRQDVAFFDNETNT-GEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIK 202
K++LRQDV++FD+ NT G + R++ D ++ A G ++ Q +A G +I+ I
Sbjct: 790 KSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIY 849
Query: 203 GWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGE 262
GW LTL++L+ +P++A++G V M+S + + + + + + I + RTV S T E
Sbjct: 850 GWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTRE 909
Query: 263 KQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQ 322
++ + Y + L Y++ +++ GI +++ SYA +G L+ ++
Sbjct: 910 QKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAACFRFGAYLVTQQLMTFEN 969
Query: 323 VVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRG 382
V+ V A++ G+M++G+ S + +A + I + PEID+Y T+G + + G
Sbjct: 970 VLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEG 1029
Query: 383 DIELRDVYFSYPARPNEQXXXXXXXXXXXXTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
+++ V F+YP RP+ T ALVG SG GKSTV+ L+ERFYDP AG
Sbjct: 1030 NVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGS 1089
Query: 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--ATTEEIRVATELAN 500
V +DG +K+ +QW+R ++G+VSQEP+LF SI +NIAYG + + EEI A + AN
Sbjct: 1090 VFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEAN 1149
Query: 501 AAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKV 560
+FID LP +T VG+ GTQLSGGQKQRIAIARA+++ P ILLLDEATSALD ESEKV
Sbjct: 1150 IHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKV 1209
Query: 561 VQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIR 620
VQEALD+ RT +++AHRLST++NAD+I VI GK+ E GTH +L+ +G Y ++
Sbjct: 1210 VQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQ-KGIYFSMVS 1268
Query: 621 LQEANKES 628
+Q K S
Sbjct: 1269 VQAGAKRS 1276
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 776 bits (2005), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/1154 (36%), Positives = 652/1154 (56%), Gaps = 40/1154 (3%)
Query: 43 SVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTF---GDNQNNSETV 99
+V +F +A D M++G++ AI +G+ LPLM L+FGD+ ++F G+ NS +
Sbjct: 32 AVSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNM 91
Query: 100 DKVSKVAV-----------KFVYLGIGSG--IASFLQVTCWMITGERQATRIRGLYLKTI 146
+ K A+ + Y GIG+G I +++QV+ W + RQ +IR + I
Sbjct: 92 SEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAI 151
Query: 147 LRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLL 206
+ Q++ +FD + GE+ R++ D I + +G+K+G F Q MATF GGF+I F +GW L
Sbjct: 152 MNQEIGWFDVH-DVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKL 210
Query: 207 TLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAM 266
TLV+L+ P+L +S G+ A ++S + + AYAKA +V E+ + +IRTV +F G+K+ +
Sbjct: 211 TLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKEL 270
Query: 267 SNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNV 326
Y L A + G+++ + A I +G L+++ SYAL+ WYG L++ + Y+ GQV+ V
Sbjct: 271 ERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTV 330
Query: 327 MVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIEL 386
+VL G+ S+G+ASP + AF + AA+++F+ I+ KP ID++ G D+I+G++E
Sbjct: 331 FFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEF 390
Query: 387 RDVYFSYPARPNEQXXXXXXXXXXXXTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID 446
++++FSYP+R Q T ALVG SG GKST + L++R YDP G V ID
Sbjct: 391 KNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSID 450
Query: 447 GINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFID 506
G +++ ++++R+ IG+VSQEPVLF +I +NI YG++D T +EI A + ANA FI
Sbjct: 451 GQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIM 510
Query: 507 KLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALD 566
KLP DTLVGE G QLSGGQKQRIAIARA++++P+ILLLDEATSALD ESE VVQ ALD
Sbjct: 511 KLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALD 570
Query: 567 RIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANK 626
+ RTT+++AHRLSTVRNAD+IA G IVE+G H +L+ + +G Y +L+ Q A
Sbjct: 571 KAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMRE-KGIYFKLVMTQTAGN 629
Query: 627 ESEQTIDG-QRKSEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGLPSGQFAD 685
E E + + K EI P Q D
Sbjct: 630 EIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICG------------PHDQ--D 675
Query: 686 TALGEPAGPSQPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSV 745
L + +E P R+ LN E P + G A+ NG + P + ++ S V
Sbjct: 676 RKL----STKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKV 731
Query: 746 IETFFK--PPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEK 803
+ F PP +++S ++L++L LG SF+ Q + F AG L +R+R M F+
Sbjct: 732 VGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKS 791
Query: 804 VIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASW 863
++ +VSWFD+P++++GA+ RL+ DAA V+ G LA I QNI+ G+II+ W
Sbjct: 792 MLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGW 851
Query: 864 QLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEK 923
QL L++L ++P+I ++G +MK + G + K + E + ++A +A+ + RTV S E+K
Sbjct: 852 QLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQK 911
Query: 924 VMQLYKKKCEAPMKTGIRQGMVSXXXXXXXXXXXXXXXXXXXXXXXRLVEDGKATFSDVF 983
+Y + + P + +++ V LV TF +V
Sbjct: 912 FETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVL 971
Query: 984 KVFFSLTMTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRESKIDPSDESGTILEDVKGEI 1043
VF ++ + +ID G ++G +
Sbjct: 972 LVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNV 1031
Query: 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHIT 1103
+ V F YP+RP + V + L+L+++ G+T+ALVG SG GKSTVV LL+RFYDP AG +
Sbjct: 1032 QFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVF 1091
Query: 1104 LDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATE-AEIQAASEMANAH 1162
LDG EI++L ++WLR Q+G+VSQEP+LF+ +I NIAYG EI A++ AN H
Sbjct: 1092 LDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIH 1151
Query: 1163 KFICSLQQVRTSRL 1176
+FI SL +R+
Sbjct: 1152 QFIDSLPDKYNTRV 1165
Score = 403 bits (1036), Expect = e-112, Method: Compositional matrix adjust.
Identities = 229/608 (37%), Positives = 356/608 (58%), Gaps = 12/608 (1%)
Query: 30 HDSEKGKQTEKT--ESVP---FYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGD 84
HD ++ T++ E VP F+++ +S + ++G AI NG P +++F
Sbjct: 672 HDQDRKLSTKEALDEDVPPASFWRILKL-NSTEWPYFVVGIFCAIINGGLQPAFSVIFSK 730
Query: 85 LINTFGDNQNNSETVDKVSKV-AVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYL 143
++ F N ET + S + ++ F+ LGI S I FLQ + GE R+R +
Sbjct: 731 VVGVF-TNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVF 789
Query: 144 KTILRQDVAFFDNETNT-GEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIK 202
K++LRQDV++FD+ NT G + R++ D ++ A G ++ Q +A G +I+ I
Sbjct: 790 KSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIY 849
Query: 203 GWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGE 262
GW LTL++L+ +P++A++G V M+S + + + + + + I + RTV S T E
Sbjct: 850 GWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTRE 909
Query: 263 KQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQ 322
++ + Y + L Y++ +++ GI +++ SYA + +G L+ ++
Sbjct: 910 QKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFEN 969
Query: 323 VVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRG 382
V+ V A++ G+M++G+ S + +A + I + PEID+Y T+G + + G
Sbjct: 970 VLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEG 1029
Query: 383 DIELRDVYFSYPARPNEQXXXXXXXXXXXXTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
+++ V F+YP RP+ T ALVG SG GKSTV+ L+ERFYDP AG
Sbjct: 1030 NVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGS 1089
Query: 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--ATTEEIRVATELAN 500
V +DG +K+ +QW+R ++G+VSQEP+LF SI +NIAYG + + EEI A + AN
Sbjct: 1090 VFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEAN 1149
Query: 501 AAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKV 560
+FID LP +T VG+ GTQLSGGQKQRIAIARA+++ P ILLLDEATSALD ESEKV
Sbjct: 1150 IHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKV 1209
Query: 561 VQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIR 620
VQEALD+ RT +++AHRLST++NAD+I VI GK+ E GTH +L+ +G Y ++
Sbjct: 1210 VQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQ-KGIYFSMVS 1268
Query: 621 LQEANKES 628
+Q K S
Sbjct: 1269 VQAGAKRS 1276
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/1172 (31%), Positives = 609/1172 (51%), Gaps = 27/1172 (2%)
Query: 22 DSSMSGNEHDSEKGKQTEKTESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLL 81
D+ S E + + E V +L+ + + + L+ IG++ A+ G LPLM++L
Sbjct: 38 DNIDSNGEIKITRDAKEEVVNKVSIPQLYRYTTTLEKLLLFIGTLVAVITGAGLPLMSIL 97
Query: 82 FGDLINTF-----------------GDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQV 124
G + F G N ++ V V + + +G A + V
Sbjct: 98 QGKVSQAFINEQIVINNNGSTFLPTGQNYTKTDFEHDVMNVVWSYAAMTVGMWAAGQITV 157
Query: 125 TCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGK 184
TC++ E+ R+R ++K+ILRQ++++FD ++G + ++ + +++ G+K+G
Sbjct: 158 TCYLYVAEQMNNRLRREFVKSILRQEISWFDTN-HSGTLATKLFDNLERVKEGTGDKIGM 216
Query: 185 FLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAAS 244
Q ++ F+ GF++AF W LTLVML+ P+ A+ G +A +S + R YAKA
Sbjct: 217 AFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGK 276
Query: 245 VVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYAL 304
VVE+TI SIRTV S G + + Y + A K+GV +GL GI G + F S+AL
Sbjct: 277 VVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFAL 336
Query: 305 SVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRK 364
+ + G + + N G ++ +V+ GSM+LG A P L+ G Q AA ++E ++RK
Sbjct: 337 AFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRK 396
Query: 365 PEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQXXXXXXXXXXXXTTAALVGQSGSG 424
P ID+ G+ I+GDI + +V+F+YP+RP+ T ALVG SG G
Sbjct: 397 PVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCG 456
Query: 425 KSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGK 484
KST+ISL+ R+YD G++ IDG+++++ L+++RK + +VSQEP LF +I++NI+ GK
Sbjct: 457 KSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGK 516
Query: 485 DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRIL 544
+ T EE+ A ++ANA KFI LP G +TLVG+ GTQLSGGQKQRIAIARA++++P+IL
Sbjct: 517 EGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKIL 576
Query: 545 LLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTH 604
LLDEATSALDAESE +VQ+ALD+ RTT+I+AHRLST+RNAD+I G++VE G H
Sbjct: 577 LLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDH 636
Query: 605 SKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEIXXXXXXXXXXXXXXXXXXXXXXXX 664
L+ +G Y L+ Q + +G+ E
Sbjct: 637 RALMAQ-QGLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIMN 695
Query: 665 XXXXXXXXXXXFGLPSGQFADTALGEPAGP---SQPTEEVAPEVPTRRLAYLNKPEIPVI 721
G P + +G+ A + E A + + Y +P +
Sbjct: 696 RVRSSTIGSITNG-PVIDEKEERIGKDALSRLKQELEENNAQKTNLFEILYHARPHALSL 754
Query: 722 LAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQ 781
G A G I P Y + +S + F P + FWAL++L L A + S
Sbjct: 755 FIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSFLM 814
Query: 782 SYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDAL 841
++F +A L + +R+ F V+ + +FD P+++SG I RL+ D ++R +
Sbjct: 815 TFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRF 874
Query: 842 ARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEA 901
+ ++ + + AG+ +AF WQ+AL+I+ +LP++ Y + + G + + ++ ++
Sbjct: 875 STVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADS 934
Query: 902 SQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSXXXXXXXXXXXXXXX 961
++A +A+ ++RTV + E+ + + +K + P K I++ +
Sbjct: 935 GKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLN 994
Query: 962 XXXXXXXXRLVEDGKATFSD--VFKVFFSLTMTXXXXXXXXXXXXXXXXXXXXXXXXXXX 1019
L+ T V +V +++T++
Sbjct: 995 TCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGM 1054
Query: 1020 XXRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGE 1079
+ SKID +G + + G++ +V F YP RP++++ + L+ + G+T+ALVG
Sbjct: 1055 LRKISKIDSLSLAGE-KKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGP 1113
Query: 1080 SGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANI 1139
SG GKSTVV+LL+RFYD G I +DG EI+ L + R Q+ +VSQEP LF+ +I NI
Sbjct: 1114 SGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENI 1173
Query: 1140 AYG-KGGDATEAEIQAASEMANAHKFICSLQQ 1170
YG T A+++ A+ +AN H FI L +
Sbjct: 1174 IYGLDPSSVTMAQVEEAARLANIHNFIAELPE 1205
Score = 329 bits (844), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 209/618 (33%), Positives = 330/618 (53%), Gaps = 23/618 (3%)
Query: 19 VGKDSSMSGNEHDSEKGKQTEKTESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLM 78
+GKD+ + E Q KT +++ A +L I S IG G P
Sbjct: 718 IGKDALSRLKQELEENNAQ--KTN---LFEILYHARPHALSLFIGMSTATIG-GFIYPTY 771
Query: 79 TLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRI 138
++ F +N F N ++ + + A+ F+ L GI SFL I E +
Sbjct: 772 SVFFTSFMNVFAGNP--ADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDL 829
Query: 139 RGLYLKTILRQDVAFFDNETN-TGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFL 197
R + +L Q + FFD+ N +G++ R++ D ++ A+ + + + + + G
Sbjct: 830 RNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIG 889
Query: 198 IAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVA 257
+AF GW + L++++ +P++A + + + + +A + + + I ++RTV
Sbjct: 890 LAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQ 949
Query: 258 SFTGEKQAMSNYKKFLVTAYKSGVQE----GLAAGIGLGMVMLIVFCSYALSVWYGGKLI 313
+ E N+ + L +K ++E GL+ G ++ L+ C+Y + G LI
Sbjct: 950 ALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRM----GLALI 1005
Query: 314 LEE--GYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYD 371
+ + +V+ VM A+ + +LG A+ + A +F + + +ID+
Sbjct: 1006 ITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLS 1065
Query: 372 TKGKILDDIRGDIELRDVYFSYPARPNEQXXXXXXXXXXXXTTAALVGQSGSGKSTVISL 431
G+ + G + ++V F+YP RP + T ALVG SG GKSTV++L
Sbjct: 1066 LAGE-KKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVAL 1124
Query: 432 IERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA--TT 489
+ERFYD GE+ IDG +K + R +I +VSQEP LF SI +NI YG D + T
Sbjct: 1125 LERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTM 1184
Query: 490 EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEA 549
++ A LAN FI +LP+G +T VG+ GTQLSGGQKQRIAIARA++++P+ILLLDEA
Sbjct: 1185 AQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEA 1244
Query: 550 TSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVE 609
TSALD ESEKVVQEALDR RT +++AHRL+TV NAD IAV+ G I+EKGTH++L+
Sbjct: 1245 TSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMS 1304
Query: 610 DPEGAYSQLIRLQEANKE 627
+ +GAY +L + Q K+
Sbjct: 1305 E-KGAYYKLTQKQMTEKK 1321
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 352 bits (904), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 206/534 (38%), Positives = 317/534 (59%), Gaps = 20/534 (3%)
Query: 100 DKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETN 159
D ++++ + + + A+ ++V +G+R R+R +ILRQ+VAFFD +T
Sbjct: 59 DNLTRLCLGLSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFD-KTR 117
Query: 160 TGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAM 219
TGE++ R+S DT L+ ++ E + L+ A G + F L +LS +P +++
Sbjct: 118 TGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSI 177
Query: 220 SGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKS 279
+ + K++ Q + A+A + E+ IG++RTV +F E + Y + +
Sbjct: 178 IAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQL 237
Query: 280 GVQEGLA-AGI----GLGMVMLIVFCSYALSVWYGGKLILEEGY-NGGQVVNVMVAVLTG 333
+E A AG GL +++ LSV Y G L++ + G++ + ++
Sbjct: 238 ARKEAFARAGFFGATGLSGNLIV------LSVLYKGGLLMGSAHMTVGELSSFLMYAFWV 291
Query: 334 SMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDD--IRGDIELRDVYF 391
+S+G S S G A +++E + R+P++ +G IL++ +G +E ++V+F
Sbjct: 292 GISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPF--NEGVILNEKSFQGALEFKNVHF 349
Query: 392 SYPARPNEQXXXXXXXXXXXXTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK 451
+YPARP + ALVG SGSGKSTV+SL+ R YDP +G + +DG +++
Sbjct: 350 AYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIR 409
Query: 452 EFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD---ATTEEIRVATELANAAKFIDKL 508
+ W+R KIG VSQEP+LF+ SI +NIAYG DD T EEI+ E+ANA FI
Sbjct: 410 QLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNF 469
Query: 509 PQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI 568
PQG +T+VGE G LSGGQKQRIAIARA+LK+P+ILLLDEATSALDAE+E +VQEALDR+
Sbjct: 470 PQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRL 529
Query: 569 MVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622
M RT +++AHRLST++NA+M+AV+ +GKI E G H +L+ P G Y +L+ Q
Sbjct: 530 MDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQ 583
Score = 140 bits (354), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 76/153 (49%), Positives = 102/153 (66%), Gaps = 6/153 (3%)
Query: 1022 RESKIDPSDESGTILED--VKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGE 1079
RE K+ P +E G IL + +G +E +V F YP+RP+V +F+D +L I +G ALVG
Sbjct: 321 REPKL-PFNE-GVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGP 378
Query: 1080 SGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANI 1139
SGSGKSTV+SLL R YDP +G I+LDG +I++L WLR ++G VSQEP+LF+ +I NI
Sbjct: 379 SGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENI 438
Query: 1140 AYGKG--GDATEAEIQAASEMANAHKFICSLQQ 1170
AYG T EIQ +E+ANA FI + Q
Sbjct: 439 AYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQ 471
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 112/240 (46%), Gaps = 13/240 (5%)
Query: 703 PEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRF 762
PE R+L L PE + A + VI + +I+ + P D+
Sbjct: 5 PE--ARKLLGLAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDN-- 60
Query: 763 WALIYLALGAGSFLLSPAQS-----YFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEH 817
L L LG + L A + Y +G +++ R+R+ F ++ EV++FD+
Sbjct: 61 --LTRLCLGLSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTR- 117
Query: 818 SSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIG 877
+G + RLS+D A + V + L+ ++ + A+ G+ + F S LA +L ++P +
Sbjct: 118 -TGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVS 176
Query: 878 VSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMK 937
+ ++++ + + +A+Q+A + +G++RTV +F E ++ Y K + M+
Sbjct: 177 IIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQ 236
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 349 bits (896), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 203/534 (38%), Positives = 314/534 (58%), Gaps = 20/534 (3%)
Query: 100 DKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETN 159
D ++++ + + + A+ ++V +G+R R+R +ILRQ+VAFFD +T
Sbjct: 90 DNLTRLCLGLSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFD-KTR 148
Query: 160 TGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAM 219
TGE++ R+S DT L+ ++ E + L+ A G + F L +LS +P +++
Sbjct: 149 TGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSI 208
Query: 220 SGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKS 279
+ + K++ Q + A+A + E+ IG++RTV +F E + Y + +
Sbjct: 209 IAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQL 268
Query: 280 GVQEGLA-----AGIGLGMVMLIVFCSYALSVWYGGKLILEEGY-NGGQVVNVMVAVLTG 333
+E A GL +++ LSV Y G L++ + G++ + ++
Sbjct: 269 ARKEAFARAGFFGATGLSGNLIV------LSVLYKGGLLMGSAHMTVGELSSFLMYAFWV 322
Query: 334 SMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDD--IRGDIELRDVYF 391
+S+G S S G A +++E + R+P++ +G IL++ +G +E ++V+F
Sbjct: 323 GISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPF--NEGVILNEKSFQGALEFKNVHF 380
Query: 392 SYPARPNEQXXXXXXXXXXXXTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK 451
+YPARP + ALVG SGSGKSTV+SL+ R YDP +G + +DG +++
Sbjct: 381 AYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIR 440
Query: 452 EFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD---ATTEEIRVATELANAAKFIDKL 508
+ W+R KIG VSQEP+LF+ SI +NIAYG DD T EEI+ E+ANA FI
Sbjct: 441 QLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNF 500
Query: 509 PQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI 568
PQG +T+VGE G LSGGQKQRIAIARA+LK+P+ILLLDEATSALDAE+E +VQEALDR+
Sbjct: 501 PQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRL 560
Query: 569 MVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622
M RT +++AH LST++NA+M+AV+ +GKI E G H +L+ P G Y +L+ Q
Sbjct: 561 MDGRTVLVIAHHLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQ 614
Score = 140 bits (353), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 76/153 (49%), Positives = 102/153 (66%), Gaps = 6/153 (3%)
Query: 1022 RESKIDPSDESGTILED--VKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGE 1079
RE K+ P +E G IL + +G +E +V F YP+RP+V +F+D +L I +G ALVG
Sbjct: 352 REPKL-PFNE-GVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGP 409
Query: 1080 SGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANI 1139
SGSGKSTV+SLL R YDP +G I+LDG +I++L WLR ++G VSQEP+LF+ +I NI
Sbjct: 410 SGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENI 469
Query: 1140 AYGKG--GDATEAEIQAASEMANAHKFICSLQQ 1170
AYG T EIQ +E+ANA FI + Q
Sbjct: 470 AYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQ 502
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 117/258 (45%), Gaps = 19/258 (7%)
Query: 691 PAGPS------QPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISS 744
PA P +P PE R+L L PE + A + VI +
Sbjct: 18 PAAPPGDKGRLRPAAAGLPE--ARKLLGLAYPERRRLAAAVGFLTMSSVISMSAPFFLGK 75
Query: 745 VIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQS-----YFFAVAGNKLIQRIRSM 799
+I+ + P D+ L L LG + L A + Y +G +++ R+R+
Sbjct: 76 IIDVIYTNPTVDYSDN----LTRLCLGLSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTS 131
Query: 800 CFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAF 859
F ++ EV++FD+ +G + RLS+D A + V + L+ ++ + A+ G+ + F
Sbjct: 132 LFSSILRQEVAFFDKTR--TGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMF 189
Query: 860 TASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFC 919
S LA +L ++P + + ++++ + + +A+Q+A + +G++RTV +F
Sbjct: 190 FVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFG 249
Query: 920 AEEKVMQLYKKKCEAPMK 937
E ++ Y K + M+
Sbjct: 250 KEMTEIEKYASKVDHVMQ 267
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 278 bits (711), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 173/514 (33%), Positives = 287/514 (55%), Gaps = 11/514 (2%)
Query: 112 LGIGSGIASFLQVTC--WMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSG 169
L I GI S++ C W ++G+ T R L+ ++ VAFFD ++ TG ++ R++
Sbjct: 74 LMILRGITSYISSYCISW-VSGKVVMTMRRRLF-GHMMGMPVAFFDKQS-TGTLLSRITY 130
Query: 170 DTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMIS 229
D+ + + + ++ A+ +G F++ F W L+++++ P+++++ V++
Sbjct: 131 DSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFR 190
Query: 230 KMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGI 289
+S Q + + EQ + + V F G++ + K G++ A+ I
Sbjct: 191 SISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSI 250
Query: 290 GLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGA 349
++ LI + A ++ + + G + V +++ L + + F
Sbjct: 251 SDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQR 310
Query: 350 GQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQXXXXXXXXX 409
G AA +F ++ + E D +++D GD+E R+V F+YP R
Sbjct: 311 GMAACQTLFAILDSEQE---KDEGKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKI 366
Query: 410 XXXTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEP 469
T ALVG+SGSGKST+ SLI RFYD G +L+DG +L+E+ L +R ++ LVSQ
Sbjct: 367 PAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNV 426
Query: 470 VLFTGSIKDNIAYGK-DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528
LF ++ +NIAY + ++ + E+I A +A A FI+K+ G+DT++GE+G LSGGQ+
Sbjct: 427 HLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQR 486
Query: 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNAD 588
QRIAIARA+L+D IL+LDEATSALD ESE+ +Q ALD + NRT++++AHRLST+ AD
Sbjct: 487 QRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQAD 546
Query: 589 MIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622
I V+ G IVE+GTHS+L+ G Y+QL ++Q
Sbjct: 547 EIVVVEDGIIVERGTHSELLAQ-HGVYAQLHKMQ 579
Score = 135 bits (341), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/136 (49%), Positives = 92/136 (67%), Gaps = 1/136 (0%)
Query: 1030 DESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVS 1089
DE +++ G++E +V+F YP R +V R++NLKI AGKTVALVG SGSGKST+ S
Sbjct: 329 DEGKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIAS 387
Query: 1090 LLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATE 1149
L+ RFYD D GHI +DG ++++ L LR Q+ LVSQ LFNDT+ NIAY + + +
Sbjct: 388 LITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSR 447
Query: 1150 AEIQAASEMANAHKFI 1165
+I+ A+ MA A FI
Sbjct: 448 EQIEEAARMAYAMDFI 463
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 97/208 (46%), Gaps = 12/208 (5%)
Query: 725 TIAAMANGVILPIYGLLISSVIETF----FKPPHE--LKKDSR---FW-ALIYLALGAGS 774
TIA G+I+ L++++ +TF KP + K R W L+ + L
Sbjct: 19 TIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILR 78
Query: 775 FLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVR 834
+ S SY + K++ +R F ++ M V++FD+ S+G + +R++ D+ V
Sbjct: 79 GITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDK--QSTGTLLSRITYDSEQVA 136
Query: 835 ALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADA 894
+ AL +V+ ++ I+ F SWQL++I++V+ P++ ++ K + S +
Sbjct: 137 SSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNM 196
Query: 895 KMKYEEASQVANDAVGSIRTVASFCAEE 922
+ + + A + + V F +E
Sbjct: 197 QNTMGQVTTSAEQMLKGHKEVLIFGGQE 224
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 278 bits (711), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 183/568 (32%), Positives = 307/568 (54%), Gaps = 21/568 (3%)
Query: 61 MIIGSIGAIGNGLCLPLMTLLFGDLINT-FGDNQNNSETVDKVSKVAVKFVYLG--IGSG 117
+I+ + I N M L L++ FG D+ V + V +G I G
Sbjct: 27 LIVAGVALILNAASDTFMLSLLKPLLDDGFGKT-------DRSVLVWMPLVVIGLMILRG 79
Query: 118 IASFLQVTC--WMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQ 175
I S++ C W ++G+ T R L+ ++ V+FFD ++ TG ++ R++ D+ +
Sbjct: 80 ITSYVSSYCISW-VSGKVVMTMRRRLF-GHMMGMPVSFFDKQS-TGTLLSRITYDSEQVA 136
Query: 176 DAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRG 235
+ + ++ A+ +G F++ F W L+++++ P+++++ V++ +S
Sbjct: 137 SSSSGALITVVREGASIIGLFIMMFYYSWQLSIILIVLAPIVSIAIRVVSKRFRNISKNM 196
Query: 236 QGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVM 295
Q + + EQ + + V F G++ + K G++ A+ I ++
Sbjct: 197 QNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRLQGMKMVSASSISDPIIQ 256
Query: 296 LIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAF 355
LI + A ++ + + G + V +++ L + + F G AA
Sbjct: 257 LIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQ 316
Query: 356 KMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQXXXXXXXXXXXXTTA 415
+F ++ + E D ++++ GD+E R+V F+YP R + T
Sbjct: 317 TLFTILDSEQE---KDEGKRVIERATGDVEFRNVTFTYPGR-DVPALRNINLKIPAGKTV 372
Query: 416 ALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGS 475
ALVG+SGSGKST+ SLI RFYD GE+L+DG +L+E+ L +R ++ LVSQ LF +
Sbjct: 373 ALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDT 432
Query: 476 IKDNIAYGK-DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534
+ +NIAY + + + E+I A +A A FI+K+ G+DT++GE+G LSGGQ+QRIAIA
Sbjct: 433 VANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIA 492
Query: 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIH 594
RA+L+D IL+LDEATSALD ESE+ +Q ALD + NRT++++AHRLST+ AD I V+
Sbjct: 493 RALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVE 552
Query: 595 RGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622
G IVE+GTH+ L+E G Y+QL ++Q
Sbjct: 553 DGVIVERGTHNDLLEH-RGVYAQLHKMQ 579
Score = 135 bits (339), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/139 (48%), Positives = 91/139 (65%), Gaps = 1/139 (0%)
Query: 1030 DESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVS 1089
DE ++E G++E +V+F YP R DV R++NLKI AGKTVALVG SGSGKST+ S
Sbjct: 329 DEGKRVIERATGDVEFRNVTFTYPGR-DVPALRNINLKIPAGKTVALVGRSGSGKSTIAS 387
Query: 1090 LLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATE 1149
L+ RFYD D G I +DG ++++ L LR Q+ LVSQ LFNDT+ NIAY + +
Sbjct: 388 LITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSR 447
Query: 1150 AEIQAASEMANAHKFICSL 1168
+I+ A+ MA A FI +
Sbjct: 448 EQIEEAARMAYAMDFINKM 466
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 100/216 (46%), Gaps = 12/216 (5%)
Query: 725 TIAAMANGVILPIYGLLISSVIETF----FKPPHE--LKKDSR---FW-ALIYLALGAGS 774
TIA G+I+ L++++ +TF KP + K R W L+ + L
Sbjct: 19 TIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKTDRSVLVWMPLVVIGLMILR 78
Query: 775 FLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVR 834
+ S SY + K++ +R F ++ M VS+FD+ S+G + +R++ D+ V
Sbjct: 79 GITSYVSSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDK--QSTGTLLSRITYDSEQVA 136
Query: 835 ALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADA 894
+ AL +V+ ++ I+ F SWQL++I++V+ P++ ++ K + S +
Sbjct: 137 SSSSGALITVVREGASIIGLFIMMFYYSWQLSIILIVLAPIVSIAIRVVSKRFRNISKNM 196
Query: 895 KMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKK 930
+ + + A + + V F +E + + K
Sbjct: 197 QNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDK 232
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 268 bits (685), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 153/486 (31%), Positives = 274/486 (56%), Gaps = 6/486 (1%)
Query: 137 RIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGF 196
R+R + + R V FFD T G+++ R+ D I + +G + +F + T G
Sbjct: 111 RLRKELFEKLQRVPVGFFD-RTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAV 169
Query: 197 LIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTV 256
++ F +L+LV LS +PL + +++ K Q + ++E+ I + +
Sbjct: 170 IMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVI 229
Query: 257 ASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEE 316
FT E++ M + + + K G + + +G+ ++ ++ +AL +GG L L++
Sbjct: 230 KLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKD 289
Query: 317 GYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKI 376
G + + + L E S + A+A ++FE ++ + E D D
Sbjct: 290 IITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKD--DPDAVE 347
Query: 377 LDDIRGDIELRDVYFSYPARPNEQXXXXXXXXXXXXTTAALVGQSGSGKSTVISLIERFY 436
L ++RG+IE ++V+FSY + + ALVG +GSGK+T+++L+ RFY
Sbjct: 348 LREVRGEIEFKNVWFSYDKK--KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFY 405
Query: 437 DPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVAT 496
D G++L+DGI++++ + +R IG+V Q+ +LF+ ++K+N+ YG AT EEI+ A
Sbjct: 406 DVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAA 465
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
+L ++ FI LP+G +T++ ++G LS GQ+Q +AI RA L +P+IL+LDEATS +D +
Sbjct: 466 KLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTK 525
Query: 557 SEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616
+EK +Q A+ ++M +T++I+AHRL+T++NAD+I V+ G+IVE G H +L++ G Y
Sbjct: 526 TEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQK-RGFYY 584
Query: 617 QLIRLQ 622
+L Q
Sbjct: 585 ELFTSQ 590
Score = 117 bits (294), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 61/148 (41%), Positives = 95/148 (64%), Gaps = 6/148 (4%)
Query: 1023 ESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGS 1082
E K DP L +V+GEIE +V F Y + V +D+ I+ G+ VALVG +GS
Sbjct: 338 EEKDDPD---AVELREVRGEIEFKNVWFSYDKKK--PVLKDITFHIKPGQKVALVGPTGS 392
Query: 1083 GKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
GK+T+V+LL RFYD D G I +DG++I+K++ LR +G+V Q+ +LF+ T++ N+ YG
Sbjct: 393 GKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYG 452
Query: 1143 KGGDATEAEIQAASEMANAHKFICSLQQ 1170
G AT+ EI+ A+++ ++ FI L +
Sbjct: 453 NPG-ATDEEIKEAAKLTHSDHFIKHLPE 479
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 118/268 (44%), Gaps = 27/268 (10%)
Query: 691 PAGPSQPTEEVAPEVPT----RRLAYLNKPEIPVILAGTIAAMAN--GVILPIYGLLISS 744
P GP E+ A + PT R L YL +I+ +++ GV+ P LI
Sbjct: 8 PHGPI--LEKPALKNPTATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSP---YLIGK 62
Query: 745 VIETFFKPPHELKKDSRF-----WALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSM 799
I+ F P RF + LI + A + LL Q ++ R+R
Sbjct: 63 TIDVVFVP-------RRFDLLPRYMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKE 115
Query: 800 CFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAF 859
FEK+ + V +FD H G I +R+ D ++ ++G+++ + I T A +I+ F
Sbjct: 116 LFEKLQRVPVGFFDRTPH--GDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMF 173
Query: 860 TASWQLALIILVMLPL-IGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASF 918
+ L+L+ L ++PL + ++ + K F + ++ + + + + + + + F
Sbjct: 174 RVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRV-LGQLNGIIEEDISGLTVIKLF 232
Query: 919 CAEEKVMQLYKKKCEAPMKTGIRQGMVS 946
EEK M+ + + E+ K G + + S
Sbjct: 233 TREEKEMEKFDRVNESLRKVGTKAQIFS 260
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 266 bits (679), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 180/596 (30%), Positives = 305/596 (51%), Gaps = 23/596 (3%)
Query: 30 HDSEKGKQTEKTESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINT- 88
H E QT F +L+T+ L ++ +I + N M L L++
Sbjct: 4 HSDESNWQT-------FKRLWTYIRLYKAGL-VVSTIALVINAAADTYMISLLKPLLDEG 55
Query: 89 FGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILR 148
FG+ ++N + + + FV G++ F C ++R +
Sbjct: 56 FGNAESNFLRILPFMILGLMFV-----RGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMH 110
Query: 149 QDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTL 208
V FFD E+ TG ++ R++ D+ + A + ++ A+ +G + F W L+L
Sbjct: 111 MPVRFFDQES-TGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSL 169
Query: 209 VMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSN 268
V++ P++A + ++ K+S Q A S EQ + + V S+ G++
Sbjct: 170 VLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKR 229
Query: 269 YKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMV 328
+ K + + ++ A I ++ +I + ++ + G V
Sbjct: 230 FDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFS 289
Query: 329 AVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKI-LDDIRGDIELR 387
A+ L + S F G AA +F ++ + E D GK + + G+++++
Sbjct: 290 AMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERD----NGKYEAERVNGEVDVK 345
Query: 388 DVYFSYPARPNEQXXXXXXXXXXXXTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447
DV F+Y + + T ALVG+SGSGKST+ +L RFYD +G + +DG
Sbjct: 346 DVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDG 404
Query: 448 INLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKD-DATTEEIRVATELANAAKFID 506
++++++L +R+ LVSQ LF +I +NIAY + + T E+I A A+A +FI+
Sbjct: 405 HDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIE 464
Query: 507 KLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALD 566
+PQG+DT++GE+GT LSGGQ+QR+AIARA+L+D +L+LDEATSALD ESE+ +Q ALD
Sbjct: 465 NMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALD 524
Query: 567 RIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622
+ N+T +++AHRLST+ AD I V+ G+I+E+G H+ L+ +GAY+QL R+Q
Sbjct: 525 ELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQ-DGAYAQLHRIQ 579
Score = 113 bits (283), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 60/134 (44%), Positives = 84/134 (62%), Gaps = 1/134 (0%)
Query: 1037 EDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD 1096
E V GE+++ V+F Y + + ++ I GKTVALVG SGSGKST+ +L RFYD
Sbjct: 336 ERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD 394
Query: 1097 PDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAAS 1156
D+G I LDG +++ +L LR+ LVSQ LFNDTI NIAY G+ T +I+ A+
Sbjct: 395 VDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAA 454
Query: 1157 EMANAHKFICSLQQ 1170
A+A +FI ++ Q
Sbjct: 455 RQAHAMEFIENMPQ 468
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 3/110 (2%)
Query: 780 AQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGD 839
A SY + ++ ++R F +HM V +FD+ S+G + +R++ D+ V
Sbjct: 84 ASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQ--ESTGGLLSRITYDSEQVAGATSR 141
Query: 840 ALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVS-GYTQMKFMK 888
AL IV+ ++ L + F SWQL+L+++V+ P++ + + +F K
Sbjct: 142 ALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRK 191
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 236 bits (602), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 174/492 (35%), Positives = 251/492 (51%), Gaps = 43/492 (8%)
Query: 152 AFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVML 211
A F G+V+ R+ D +D + + T + I F LTL L
Sbjct: 109 ARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAAL 168
Query: 212 SSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKK 271
P ++ V + K++ A A+ + + + I V SF E N+ K
Sbjct: 169 FIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDK 228
Query: 272 ----FLVTAYKSGVQEGLA-AGIG----LGMVMLIVFCSY-ALSVWYGGKLILEEGYNGG 321
FL A K + A I +G +++I +Y A+S G
Sbjct: 229 KNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAIS---------------G 273
Query: 322 QVVNVMVAVLTGSMSL--GEASPCLSAFGA---GQAAAFKMFETINRKPEIDAYDTKGKI 376
+ +A G + L G +++F A+ ++F+ I+ + YD K +
Sbjct: 274 SITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID-----EDYDIKNGV 328
Query: 377 ----LDDIRGDIELRDVYFSYPARPNEQXXXXXXXXXXXX-TTAALVGQSGSGKSTVISL 431
++ +G I++ V F Y NE T A VG SG GKST+I+L
Sbjct: 329 GAQPIEIKQGRIDIDHVSFQY--NDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINL 386
Query: 432 IERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEE 491
I RFYD +G++LIDG N+K+F +R +IGLV Q+ +LF+ ++K+NI G+ AT EE
Sbjct: 387 IPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEE 446
Query: 492 IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 551
+ A ++ANA FI LPQG DT VGE G +LSGGQKQR++IAR L +P IL+LDEATS
Sbjct: 447 VVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATS 506
Query: 552 ALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDP 611
ALD ESE ++QEALD + +RTT+IVAHRLST+ +AD I VI G IVE GTH +L+
Sbjct: 507 ALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIA-K 565
Query: 612 EGAYSQLIRLQE 623
+GAY L +Q
Sbjct: 566 QGAYEHLYSIQN 577
Score = 119 bits (299), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 90/135 (66%), Gaps = 2/135 (1%)
Query: 1036 LEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFY 1095
+E +G I++ HVSF+Y + + +D+NL I G+TVA VG SG GKST+++L+ RFY
Sbjct: 333 IEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY 391
Query: 1096 DPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAA 1155
D +G I +DG I+ LR Q+GLV Q+ +LF+DT++ NI G+ AT+ E+ A
Sbjct: 392 DVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGR-PTATDEEVVEA 450
Query: 1156 SEMANAHKFICSLQQ 1170
++MANAH FI +L Q
Sbjct: 451 AKMANAHDFIMNLPQ 465
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 223 bits (567), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 113/240 (47%), Positives = 165/240 (68%), Gaps = 2/240 (0%)
Query: 383 DIELRDVYFSYPARPNEQXXXXXXXXXXXXTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
+IE DV FSYP + N + TT ALVG +GSGKST+ L+ RFYD + G+
Sbjct: 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAE-GD 75
Query: 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAA 502
+ I G N+ ++ IR IG+V Q+ +LF +IK NI YGK DAT EE+ AT+ A
Sbjct: 76 IKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLY 135
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ 562
FI+ LP+ DT+VG G +LSGG++QRIAIAR +LKDP+I++ DEATS+LD+++E + Q
Sbjct: 136 DFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQ 195
Query: 563 EALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622
+A++ + NRT +I+AHRLST+ +A+ I ++++GKIVEKGTH L++ G Y+++ +Q
Sbjct: 196 KAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLK-LNGEYAEMWNMQ 254
Score = 100 bits (249), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 78/126 (61%), Gaps = 2/126 (1%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE V+F YP + + + + +N I +G T ALVG +GSGKST+ LL RFYD + G I
Sbjct: 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAE-GDI 76
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAH 1162
+ G + K +R +G+V Q+ +LFN+TI+ NI YGK DAT+ E+ A++ A +
Sbjct: 77 KIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGK-LDATDEEVIKATKSAQLY 135
Query: 1163 KFICSL 1168
FI +L
Sbjct: 136 DFIEAL 141
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 217 bits (552), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 114/241 (47%), Positives = 157/241 (65%), Gaps = 3/241 (1%)
Query: 383 DIELRDVYFSY-PARPNEQXXXXXXXXXXXXTTAALVGQSGSGKSTVISLIERFYDPQAG 441
DI R++ F Y P P +VG+SGSGKST+ LI+RFY P+ G
Sbjct: 3 DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 60
Query: 442 EVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANA 501
+VLIDG +L W+R+++G+V Q+ VL SI DNI+ + E++ A +LA A
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 120
Query: 502 AKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVV 561
FI +L +G +T+VGE G LSGGQ+QRIAIARA++ +P+IL+ DEATSALD ESE V+
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 562 QEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRL 621
+ +I RT +I+AHRLSTV+NAD I V+ +GKIVE+G H +L+ +PE YS L +L
Sbjct: 181 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 240
Query: 622 Q 622
Q
Sbjct: 241 Q 241
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 81/130 (62%), Gaps = 4/130 (3%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRD-LNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
+I ++ F+Y +PD V D +NL I+ G+ + +VG SGSGKST+ L+QRFY P+ G
Sbjct: 3 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 60
Query: 1101 HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMAN 1160
+ +DG ++ WLR+Q+G+V Q+ VL N +I NI+ G + E I AA ++A
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAA-KLAG 119
Query: 1161 AHKFICSLQQ 1170
AH FI L++
Sbjct: 120 AHDFISELRE 129
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 216 bits (551), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 114/241 (47%), Positives = 157/241 (65%), Gaps = 3/241 (1%)
Query: 383 DIELRDVYFSY-PARPNEQXXXXXXXXXXXXTTAALVGQSGSGKSTVISLIERFYDPQAG 441
DI R++ F Y P P +VG+SGSGKST+ LI+RFY P+ G
Sbjct: 1 DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 58
Query: 442 EVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANA 501
+VLIDG +L W+R+++G+V Q+ VL SI DNI+ + E++ A +LA A
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 118
Query: 502 AKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVV 561
FI +L +G +T+VGE G LSGGQ+QRIAIARA++ +P+IL+ DEATSALD ESE V+
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 562 QEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRL 621
+ +I RT +I+AHRLSTV+NAD I V+ +GKIVE+G H +L+ +PE YS L +L
Sbjct: 179 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238
Query: 622 Q 622
Q
Sbjct: 239 Q 239
Score = 99.4 bits (246), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 81/130 (62%), Gaps = 4/130 (3%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRD-LNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
+I ++ F+Y +PD V D +NL I+ G+ + +VG SGSGKST+ L+QRFY P+ G
Sbjct: 1 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 58
Query: 1101 HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMAN 1160
+ +DG ++ WLR+Q+G+V Q+ VL N +I NI+ G + E I AA ++A
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAA-KLAG 117
Query: 1161 AHKFICSLQQ 1170
AH FI L++
Sbjct: 118 AHDFISELRE 127
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 216 bits (551), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 114/241 (47%), Positives = 157/241 (65%), Gaps = 3/241 (1%)
Query: 383 DIELRDVYFSY-PARPNEQXXXXXXXXXXXXTTAALVGQSGSGKSTVISLIERFYDPQAG 441
DI R++ F Y P P +VG+SGSGKST+ LI+RFY P+ G
Sbjct: 7 DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 442 EVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANA 501
+VLIDG +L W+R+++G+V Q+ VL SI DNI+ + E++ A +LA A
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 502 AKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVV 561
FI +L +G +T+VGE G LSGGQ+QRIAIARA++ +P+IL+ DEATSALD ESE V+
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 562 QEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRL 621
+ +I RT +I+AHRLSTV+NAD I V+ +GKIVE+G H +L+ +PE YS L +L
Sbjct: 185 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244
Query: 622 Q 622
Q
Sbjct: 245 Q 245
Score = 99.4 bits (246), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 81/130 (62%), Gaps = 4/130 (3%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRD-LNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
+I ++ F+Y +PD V D +NL I+ G+ + +VG SGSGKST+ L+QRFY P+ G
Sbjct: 7 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 1101 HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMAN 1160
+ +DG ++ WLR+Q+G+V Q+ VL N +I NI+ G + E I AA ++A
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAA-KLAG 123
Query: 1161 AHKFICSLQQ 1170
AH FI L++
Sbjct: 124 AHDFISELRE 133
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 215 bits (548), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 113/241 (46%), Positives = 157/241 (65%), Gaps = 3/241 (1%)
Query: 383 DIELRDVYFSY-PARPNEQXXXXXXXXXXXXTTAALVGQSGSGKSTVISLIERFYDPQAG 441
DI R++ F Y P P +VG+SGSGKST+ LI+RFY P+ G
Sbjct: 7 DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 442 EVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANA 501
+VLIDG +L W+R+++G+V Q+ VL SI DNI+ + E++ A +LA A
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 502 AKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVV 561
FI +L +G +T+VGE G LSGGQ+QRIAIARA++ +P+IL+ D+ATSALD ESE V+
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVI 184
Query: 562 QEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRL 621
+ +I RT +I+AHRLSTV+NAD I V+ +GKIVE+G H +L+ +PE YS L +L
Sbjct: 185 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244
Query: 622 Q 622
Q
Sbjct: 245 Q 245
Score = 99.4 bits (246), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 81/130 (62%), Gaps = 4/130 (3%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRD-LNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
+I ++ F+Y +PD V D +NL I+ G+ + +VG SGSGKST+ L+QRFY P+ G
Sbjct: 7 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 1101 HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMAN 1160
+ +DG ++ WLR+Q+G+V Q+ VL N +I NI+ G + E I AA ++A
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAA-KLAG 123
Query: 1161 AHKFICSLQQ 1170
AH FI L++
Sbjct: 124 AHDFISELRE 133
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 215 bits (548), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 113/241 (46%), Positives = 157/241 (65%), Gaps = 3/241 (1%)
Query: 383 DIELRDVYFSY-PARPNEQXXXXXXXXXXXXTTAALVGQSGSGKSTVISLIERFYDPQAG 441
DI R++ F Y P P +VG++GSGKST+ LI+RFY P+ G
Sbjct: 3 DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENG 60
Query: 442 EVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANA 501
+VLIDG +L W+R+++G+V Q+ VL SI DNI+ + E++ A +LA A
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 120
Query: 502 AKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVV 561
FI +L +G +T+VGE G LSGGQ+QRIAIARA++ +P+IL+ DEATSALD ESE V+
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 562 QEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRL 621
+ +I RT +I+AHRLSTV+NAD I V+ +GKIVE+G H +L+ +PE YS L +L
Sbjct: 181 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 240
Query: 622 Q 622
Q
Sbjct: 241 Q 241
Score = 97.8 bits (242), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 81/130 (62%), Gaps = 4/130 (3%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRD-LNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
+I ++ F+Y +PD V D +NL I+ G+ + +VG +GSGKST+ L+QRFY P+ G
Sbjct: 3 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENG 60
Query: 1101 HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMAN 1160
+ +DG ++ WLR+Q+G+V Q+ VL N +I NI+ G + E I AA ++A
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAA-KLAG 119
Query: 1161 AHKFICSLQQ 1170
AH FI L++
Sbjct: 120 AHDFISELRE 129
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 212 bits (540), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 113/241 (46%), Positives = 156/241 (64%), Gaps = 3/241 (1%)
Query: 383 DIELRDVYFSY-PARPNEQXXXXXXXXXXXXTTAALVGQSGSGKSTVISLIERFYDPQAG 441
DI R++ F Y P P +VG+SGSGKST+ LI+RFY P+ G
Sbjct: 1 DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 58
Query: 442 EVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANA 501
+VLIDG +L W+R+++G+V Q+ VL SI DNI+ + E++ A +LA A
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 118
Query: 502 AKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVV 561
FI +L +G +T+VGE G LSGGQ+QRIAIARA++ +P+IL+ DEATSALD ESE V+
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 562 QEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRL 621
+ +I RT +I+A RLSTV+NAD I V+ +GKIVE+G H +L+ +PE YS L +L
Sbjct: 179 MRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238
Query: 622 Q 622
Q
Sbjct: 239 Q 239
Score = 99.8 bits (247), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 81/130 (62%), Gaps = 4/130 (3%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRD-LNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
+I ++ F+Y +PD V D +NL I+ G+ + +VG SGSGKST+ L+QRFY P+ G
Sbjct: 1 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 58
Query: 1101 HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMAN 1160
+ +DG ++ WLR+Q+G+V Q+ VL N +I NI+ G + E I AA ++A
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAA-KLAG 117
Query: 1161 AHKFICSLQQ 1170
AH FI L++
Sbjct: 118 AHDFISELRE 127
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 212 bits (540), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 113/241 (46%), Positives = 156/241 (64%), Gaps = 3/241 (1%)
Query: 383 DIELRDVYFSY-PARPNEQXXXXXXXXXXXXTTAALVGQSGSGKSTVISLIERFYDPQAG 441
DI R++ F Y P P +VG+SGSGKST+ LI+RFY P+ G
Sbjct: 7 DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 442 EVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANA 501
+VLIDG +L W+R+++G+V Q+ VL SI DNI+ + E++ A +LA A
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 502 AKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVV 561
FI +L +G +T+VGE G LSGGQ+QRIAIARA++ +P+IL+ DEATSALD ESE V+
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 562 QEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRL 621
+ +I RT +I+A RLSTV+NAD I V+ +GKIVE+G H +L+ +PE YS L +L
Sbjct: 185 MRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244
Query: 622 Q 622
Q
Sbjct: 245 Q 245
Score = 99.8 bits (247), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 81/130 (62%), Gaps = 4/130 (3%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRD-LNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
+I ++ F+Y +PD V D +NL I+ G+ + +VG SGSGKST+ L+QRFY P+ G
Sbjct: 7 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 1101 HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMAN 1160
+ +DG ++ WLR+Q+G+V Q+ VL N +I NI+ G + E I AA ++A
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAA-KLAG 123
Query: 1161 AHKFICSLQQ 1170
AH FI L++
Sbjct: 124 AHDFISELRE 133
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 207 bits (527), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 132/457 (28%), Positives = 239/457 (52%), Gaps = 8/457 (1%)
Query: 156 NETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIP 215
N +T ++ R++ D +Q+ + + ++ F+GG ++A L+ V++ IP
Sbjct: 115 NRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIP 174
Query: 216 LLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVT 275
+ + + + + + Q + + VV + + +R V +F E+ N++K +
Sbjct: 175 PIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANES 234
Query: 276 AYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVV---NVMVAVLT 332
+S + L + + IV +W+GG L+ G ++ N ++ ++
Sbjct: 235 LRRSIISAFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMF 294
Query: 333 GSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFS 392
M +G L+ A+A ++ E +N KP I+ D L ++ G + +V F
Sbjct: 295 SLMMIGN---ILNFIVRASASAKRVLEVLNEKPAIEEADN-ALALPNVEGSVSFENVEFR 350
Query: 393 YPARPNEQXXXXXXXXXXXXTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE 452
Y + + A++G++GSGKST+++LI R DP+ G V +D ++++
Sbjct: 351 Y-FENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRT 409
Query: 453 FQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGI 512
+L+ +R I V QE VLF+G+IK+N+ +G++DAT +EI A ++A FI LP+G
Sbjct: 410 VKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGY 469
Query: 513 DTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNR 572
D+ V G SGGQKQR++IARA++K P++L+LD+ TS++D +EK + + L R
Sbjct: 470 DSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGC 529
Query: 573 TTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVE 609
TT I+ ++ T AD I V+H GK+ GTH +L+E
Sbjct: 530 TTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLE 566
Score = 104 bits (259), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 90/141 (63%), Gaps = 2/141 (1%)
Query: 1036 LEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFY 1095
L +V+G + +V F+Y D V +N ++ G VA++GE+GSGKST+++L+ R
Sbjct: 335 LPNVEGSVSFENVEFRYFENTD-PVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLI 393
Query: 1096 DPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAA 1155
DP+ G + +D ++++ ++LK LR + V QE VLF+ TI+ N+ +G+ DAT+ EI A
Sbjct: 394 DPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGR-EDATDDEIVEA 452
Query: 1156 SEMANAHKFICSLQQVRTSRL 1176
+++A H FI SL + SR+
Sbjct: 453 AKIAQIHDFIISLPEGYDSRV 473
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 71/151 (47%), Gaps = 7/151 (4%)
Query: 796 IRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGL 855
+R F KV+ +S + H+S I RL+ D ++ LV L +V+ G+
Sbjct: 98 LRRDLFRKVLSFSISNVNR-FHTSSLI-TRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGI 155
Query: 856 IIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTV 915
++A + + +L+ +++ ++P I + K + +E ++V + + +R V
Sbjct: 156 VMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVV 215
Query: 916 ASFCAEEKVMQLYKKKCEAPMKTGIRQGMVS 946
+F EE + ++K E+ +R+ ++S
Sbjct: 216 RAFRREEYENENFRKANES-----LRRSIIS 241
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 204 bits (519), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 117/275 (42%), Positives = 164/275 (59%), Gaps = 4/275 (1%)
Query: 356 KMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQXXXXXXXXXXXXTTA 415
MF+ + + E+ G L +G IE +V+FSY + T
Sbjct: 27 NMFDLLKEETEVKDLPGAGP-LRFQKGRIEFENVHFSYA--DGRETLQDVSFTVMPGQTL 83
Query: 416 ALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGS 475
ALVG SG+GKST++ L+ RFYD +G + IDG ++ + +R IG+V Q+ VLF +
Sbjct: 84 ALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDT 143
Query: 476 IKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535
I DNI YG+ A +E+ A + A I P+G T VGE G +LSGG+KQR+AIAR
Sbjct: 144 IADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIAR 203
Query: 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHR 595
ILK P I+LLDEATSALD +E+ +Q +L ++ NRTT++VAHRLSTV NAD I VI
Sbjct: 204 TILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKD 263
Query: 596 GKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQ 630
G IVE+G H L+ G Y+ + +LQ+ +E+ +
Sbjct: 264 GCIVERGRHEALLSRG-GVYADMWQLQQGQEETSE 297
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 74/119 (62%), Gaps = 5/119 (4%)
Query: 1040 KGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA 1099
KG IE +V F Y + +D++ + G+T+ALVG SG+GKST++ LL RFYD +
Sbjct: 51 KGRIEFENVHFSYAD--GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISS 108
Query: 1100 GHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGK---GGDATEAEIQAA 1155
G I +DG +I ++ LR +G+V Q+ VLFNDTI NI YG+ G D EA QAA
Sbjct: 109 GCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAA 167
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 203 bits (517), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 107/241 (44%), Positives = 155/241 (64%), Gaps = 26/241 (10%)
Query: 369 AYDTKGKILDDIRGDIELRDVYFSYPARPNEQXXXXXXXXXXXXTTAALVGQSGSGKSTV 428
AYD +IL DI S+ A+PN + A G SG GKST+
Sbjct: 10 AYDDSEQILRDI-----------SFEAQPN--------------SIIAFAGPSGGGKSTI 44
Query: 429 ISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG-KDDA 487
SL+ERFY P AGE+ IDG + L+ R +IG VSQ+ + G+I++N+ YG + D
Sbjct: 45 FSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDY 104
Query: 488 TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLD 547
T E++ +LA A F++ +P ++T VGE G ++SGGQ+QR+AIARA L++P+IL+LD
Sbjct: 105 TDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLD 164
Query: 548 EATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKL 607
EAT++LD+ESE +VQ+ALD +M RTT+++AHRLST+ +AD I I +G+I G H++L
Sbjct: 165 EATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNEL 224
Query: 608 V 608
V
Sbjct: 225 V 225
Score = 97.8 bits (242), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 71/123 (57%), Gaps = 2/123 (1%)
Query: 1046 HHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLD 1105
HV F Y Q+ RD++ + + +A G SG GKST+ SLL+RFY P AG IT+D
Sbjct: 5 RHVDFAYDDSE--QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITID 62
Query: 1106 GVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFI 1165
G I + L+ R Q+G VSQ+ + TIR N+ YG GD T+ ++ ++A A F+
Sbjct: 63 GQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFV 122
Query: 1166 CSL 1168
++
Sbjct: 123 ENM 125
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 187 bits (474), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 99/244 (40%), Positives = 145/244 (59%), Gaps = 4/244 (1%)
Query: 379 DIRGDIELRDVYFSYPARPNEQXXXXXXXXXXXXTTAALVGQSGSGKSTVISLIERFYDP 438
+++G ++ +DV F+YP PN Q ALVG +GSGKSTV +L++ Y P
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 439 QAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG-KDDATTEEIRVATE 497
G+VL+DG L ++ ++ ++ V QEP+LF S ++NIAYG T EEI
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 498 LANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557
+ A FI PQG DT VGE G QLSGGQ+Q +A+ARA+++ PR+L+LD+ATSALDA +
Sbjct: 132 ESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGN 191
Query: 558 EKVVQEAL--DRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615
+ VQ L +RT +++ H+LS A I + G + E+GTH +L+E G Y
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLMER-GGCY 250
Query: 616 SQLI 619
++
Sbjct: 251 RSMV 254
Score = 113 bits (282), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 76/133 (57%)
Query: 1038 DVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP 1097
++KG ++ VSF YP+ P+VQV + L + GK ALVG +GSGKSTV +LLQ Y P
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 1098 DAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASE 1157
G + LDG + + +L Q+ V QEP+LF + R NIAYG T EI A +
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 1158 MANAHKFICSLQQ 1170
+ AH FI Q
Sbjct: 132 ESGAHDFISGFPQ 144
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 182 bits (463), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 98/244 (40%), Positives = 143/244 (58%), Gaps = 4/244 (1%)
Query: 379 DIRGDIELRDVYFSYPARPNEQXXXXXXXXXXXXTTAALVGQSGSGKSTVISLIERFYDP 438
+++G ++ +DV F+YP PN Q ALVG +GSGKSTV +L++ Y P
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 439 QAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG-KDDATTEEIRVATE 497
G+VL+DG L ++ ++ ++ V QEP+LF S ++NIAYG T EEI
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 498 LANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557
+ A FI PQG DT VGE G QLSGGQ+Q +A+ARA+++ PR+L+LD ATSALDA +
Sbjct: 132 ESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGN 191
Query: 558 EKVVQEAL--DRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615
+ VQ L +RT +++ +LS A I + G + E+GTH +L+E G Y
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER-GGCY 250
Query: 616 SQLI 619
++
Sbjct: 251 RSMV 254
Score = 113 bits (282), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 76/133 (57%)
Query: 1038 DVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP 1097
++KG ++ VSF YP+ P+VQV + L + GK ALVG +GSGKSTV +LLQ Y P
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 1098 DAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASE 1157
G + LDG + + +L Q+ V QEP+LF + R NIAYG T EI A +
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 1158 MANAHKFICSLQQ 1170
+ AH FI Q
Sbjct: 132 ESGAHDFISGFPQ 144
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 181 bits (459), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 98/246 (39%), Positives = 152/246 (61%), Gaps = 8/246 (3%)
Query: 380 IRGDIELRDVYFSYPARPNEQXXXXXXXXXXXXTTAALVGQSGSGKSTVISLIERFYDPQ 439
+ G ++ +DV F+YP RP+ ALVG +GSGKSTV +L++ Y P
Sbjct: 11 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT 70
Query: 440 AGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG-KDDATTEEIRVATEL 498
G++L+DG L +++ +++ +++ V QEP +F S+++NIAYG T EEI A
Sbjct: 71 GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVK 130
Query: 499 ANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES- 557
+ A FI LPQG DT V E G+QLSGGQ+Q +A+ARA+++ P +L+LD+ATSALDA S
Sbjct: 131 SGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQ 190
Query: 558 ---EKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGA 614
E+++ E+ +R +R+ +++ LS V AD I + G I E GTH +L+E +G
Sbjct: 191 LQVEQLLYESPERY--SRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK-KGC 247
Query: 615 YSQLIR 620
Y +++
Sbjct: 248 YWAMVQ 253
Score = 116 bits (291), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 81/132 (61%)
Query: 1039 VKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPD 1098
++G ++ VSF YP+RPDV V + L +R G+ ALVG +GSGKSTV +LLQ Y P
Sbjct: 11 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT 70
Query: 1099 AGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEM 1158
G + LDG + + + ++L +Q+ V QEP +F +++ NIAYG T EI AA+
Sbjct: 71 GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVK 130
Query: 1159 ANAHKFICSLQQ 1170
+ AH FI L Q
Sbjct: 131 SGAHSFISGLPQ 142
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 177 bits (450), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 142/244 (58%), Gaps = 4/244 (1%)
Query: 379 DIRGDIELRDVYFSYPARPNEQXXXXXXXXXXXXTTAALVGQSGSGKSTVISLIERFYDP 438
+++G ++ +DV F+YP PN Q ALVG +GSGKSTV +L++ Y P
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 439 QAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG-KDDATTEEIRVATE 497
G+VL+DG L ++ ++ ++ V QEP+LF S ++NIAYG T EEI
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 498 LANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557
+ A FI PQG DT VGE G QL+ GQ+Q +A+ARA+++ PR+L+LD ATSALDA +
Sbjct: 132 ESGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGN 191
Query: 558 EKVVQEAL--DRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615
+ VQ L +RT +++ +LS A I + G + E+GTH +L+E G Y
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER-GGCY 250
Query: 616 SQLI 619
++
Sbjct: 251 RSMV 254
Score = 113 bits (283), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 76/133 (57%)
Query: 1038 DVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP 1097
++KG ++ VSF YP+ P+VQV + L + GK ALVG +GSGKSTV +LLQ Y P
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 1098 DAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASE 1157
G + LDG + + +L Q+ V QEP+LF + R NIAYG T EI A +
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 1158 MANAHKFICSLQQ 1170
+ AH FI Q
Sbjct: 132 ESGAHDFISGFPQ 144
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 106 bits (264), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 118/213 (55%), Gaps = 22/213 (10%)
Query: 417 LVGQSGSGKSTVISLIERFYDPQAGEVLIDG---INLKEFQLQWIRKKIGLVSQE-PVLF 472
++G SG+GKST+I + P G VL+DG L E +L R++IG++ Q +L
Sbjct: 36 VIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLS 95
Query: 473 TGSIKDNIAYGK--DDATTEEI-RVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529
+ ++ N+A D+ +E+ R TEL + DK + + LSGGQKQ
Sbjct: 96 SRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKH--------DSYPSNLSGGQKQ 147
Query: 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNR----TTVIVAHRLSTV- 584
R+AIARA+ +P++LL DEATSALD + + + E L I NR T +++ H + V
Sbjct: 148 RVAIARALASNPKVLLCDEATSALDPATTRSILELLKDI--NRRLGLTILLITHEMDVVK 205
Query: 585 RNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617
R D +AVI G+++E+ T S++ P+ +Q
Sbjct: 206 RICDCVAVISNGELIEQDTVSEVFSHPKTPLAQ 238
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 1058 VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL---QL 1114
+Q +++L + AG+ ++G SG+GKST++ + P G + +DG E+ L +L
Sbjct: 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 77
Query: 1115 KWLRQQMGLVSQE-PVLFNDTIRANIA 1140
R+Q+G++ Q +L + T+ N+A
Sbjct: 78 TKARRQIGMIFQHFNLLSSRTVFGNVA 104
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 104 bits (260), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/213 (34%), Positives = 118/213 (55%), Gaps = 22/213 (10%)
Query: 417 LVGQSGSGKSTVISLIERFYDPQAGEVLIDG---INLKEFQLQWIRKKIGLVSQE-PVLF 472
++G SG+GKST+I + P G VL+DG L E +L R++IG++ Q +L
Sbjct: 59 VIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLS 118
Query: 473 TGSIKDNIAYGK--DDATTEEI-RVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529
+ ++ N+A D+ +E+ R TEL + DK + + LSGGQKQ
Sbjct: 119 SRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKH--------DSYPSNLSGGQKQ 170
Query: 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNR----TTVIVAHRLSTV- 584
R+AIARA+ +P++LL D+ATSALD + + + E L I NR T +++ H + V
Sbjct: 171 RVAIARALASNPKVLLCDQATSALDPATTRSILELLKDI--NRRLGLTILLITHEMDVVK 228
Query: 585 RNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617
R D +AVI G+++E+ T S++ P+ +Q
Sbjct: 229 RICDCVAVISNGELIEQDTVSEVFSHPKTPLAQ 261
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 63/112 (56%), Gaps = 7/112 (6%)
Query: 1035 ILEDVKGEIELHHVS--FKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQ 1092
I +D K I+L +++ F +R +Q +++L + AG+ ++G SG+GKST++ +
Sbjct: 17 IDDDDKHMIKLSNITKVFHQGTRT-IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVN 75
Query: 1093 RFYDPDAGHITLDGVEIQKL---QLKWLRQQMGLVSQE-PVLFNDTIRANIA 1140
P G + +DG E+ L +L R+Q+G++ Q +L + T+ N+A
Sbjct: 76 LLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVA 127
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/204 (35%), Positives = 112/204 (54%), Gaps = 11/204 (5%)
Query: 416 ALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG- 474
AL+G SGSGKST++ I Y P +G++ D ++ E + + +GLV Q L+
Sbjct: 33 ALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNVGLVFQNWALYPHM 90
Query: 475 SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534
++ NIA+ + + ++ AK + ID L+ + QLSGGQ+QR+AIA
Sbjct: 91 TVYKNIAFPLELRKAPREEIDKKVREVAKMLH-----IDKLLNRYPWQLSGGQQQRVAIA 145
Query: 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAH-RLSTVRNADMIA 591
RA++K+P +LLLDE S LDA V+ L R+ + TTV V H + + AD IA
Sbjct: 146 RALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIA 205
Query: 592 VIHRGKIVEKGTHSKLVEDPEGAY 615
VI G+I++ GT ++ P+ +
Sbjct: 206 VIREGEILQVGTPDEVYYKPKYKF 229
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 58/101 (57%), Gaps = 6/101 (5%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
EI+L ++ K+ + ++NLKI+ G+ +AL+G SGSGKST++ + Y P +G
Sbjct: 3 EIKLENIVKKFG---NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGK 59
Query: 1102 ITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAY 1141
I D ++ +L K + +GLV Q L+ T+ NIA+
Sbjct: 60 IYFDEKDVTELPPK--DRNVGLVFQNWALYPHMTVYKNIAF 98
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 101 bits (251), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/213 (34%), Positives = 116/213 (54%), Gaps = 22/213 (10%)
Query: 417 LVGQSGSGKSTVISLIERFYDPQAGEVLIDG---INLKEFQLQWIRKKIGLVSQE-PVLF 472
++G SG+GKST+I + P G VL+DG L E +L R++IG + Q +L
Sbjct: 59 VIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGXIFQHFNLLS 118
Query: 473 TGSIKDNIAYGK--DDATTEEI-RVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529
+ ++ N+A D+ +E+ R TEL + DK + + LSGGQKQ
Sbjct: 119 SRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKH--------DSYPSNLSGGQKQ 170
Query: 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNR----TTVIVAHRLSTV- 584
R+AIARA+ +P++LL D+ATSALD + + + E L I NR T +++ H V
Sbjct: 171 RVAIARALASNPKVLLCDQATSALDPATTRSILELLKDI--NRRLGLTILLITHEXDVVK 228
Query: 585 RNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617
R D +AVI G+++E+ T S++ P+ +Q
Sbjct: 229 RICDCVAVISNGELIEQDTVSEVFSHPKTPLAQ 261
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 62/112 (55%), Gaps = 7/112 (6%)
Query: 1035 ILEDVKGEIELHHVS--FKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQ 1092
I +D K I+L +++ F +R +Q +++L + AG+ ++G SG+GKST++ +
Sbjct: 17 IDDDDKHXIKLSNITKVFHQGTRT-IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVN 75
Query: 1093 RFYDPDAGHITLDGVEIQKL---QLKWLRQQMGLVSQE-PVLFNDTIRANIA 1140
P G + +DG E+ L +L R+Q+G + Q +L + T+ N+A
Sbjct: 76 LLERPTEGSVLVDGQELTTLSESELTKARRQIGXIFQHFNLLSSRTVFGNVA 127
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 100 bits (249), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 125/238 (52%), Gaps = 34/238 (14%)
Query: 415 AALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG 474
AL+G SG GK+T + ++ Y P +GE+ D + + + ++ +++G+V Q L+
Sbjct: 32 VALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKY--REVGMVFQNYALYPH 89
Query: 475 -SIKDNIAY-------GKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526
++ +NIA+ KD+ + +A +L ID L+ TQLSGG
Sbjct: 90 MTVFENIAFPLRARRISKDEVEKRVVEIARKLL------------IDNLLDRKPTQLSGG 137
Query: 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAH-RLST 583
Q+QR+A+ARA++K P++LL DE S LDA +++ + + + T+V V H +
Sbjct: 138 QQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEA 197
Query: 584 VRNADMIAVIHRGKIVEKGTHSKLVEDPEGAY---------SQLIRLQEANKESEQTI 632
+ A IAV ++GK+V+ GT ++ + P+ + + +R + E++QTI
Sbjct: 198 MTMASRIAVFNQGKLVQYGTPDEVYDSPKNMFVASFIGNPPTNFLRDFSVSVENKQTI 255
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 1064 LNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGL 1123
++ +++ G+ VAL+G SG GK+T + +L Y P +G I D V + + K+ +++G+
Sbjct: 22 VSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKY--REVGM 79
Query: 1124 VSQEPVLFND-TIRANIAY 1141
V Q L+ T+ NIA+
Sbjct: 80 VFQNYALYPHMTVFENIAF 98
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 97.4 bits (241), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 120/242 (49%), Gaps = 23/242 (9%)
Query: 384 IELRDVYFSYPARPNEQXXXXXXXXXXXXTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I +R+ F++ AR + A+VGQ G GKS+++S + D G V
Sbjct: 4 ITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 62
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAK 503
I G + V Q+ + S+++NI +G EE + + A
Sbjct: 63 AIKG-------------SVAYVPQQAWIQNDSLRENILFG---CQLEEPYYRSVIQACAL 106
Query: 504 FIDK--LPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVV 561
D LP G T +GE G LSGGQKQR+++ARA+ + I L D+ SA+DA K +
Sbjct: 107 LPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHI 166
Query: 562 QEAL---DRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQL 618
E + ++ N+T ++V H +S + D+I V+ GKI E G++ +L+ +GA+++
Sbjct: 167 FENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR-DGAFAEF 225
Query: 619 IR 620
+R
Sbjct: 226 LR 227
Score = 43.1 bits (100), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 14/100 (14%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I + + +F + +R D + I G VA+VG+ G GKS+++S L D GH+
Sbjct: 4 ITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 62
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
+ G Q W++ ND++R NI +G
Sbjct: 63 AIKGSVAYVPQQAWIQ-------------NDSLRENILFG 89
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 101/182 (55%), Gaps = 2/182 (1%)
Query: 417 LVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSI 476
L+G++GSGKST++S R + + GE+ IDG++ L+ RK G++ Q+ +F+G+
Sbjct: 52 LLGRTGSGKSTLLSAFLRLLNTE-GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTF 110
Query: 477 KDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536
+ N+ + E +VA E+ I++ P +D ++ + G LS G KQ + +AR+
Sbjct: 111 RKNLDPNAAHSDQEIWKVADEVG-LRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARS 169
Query: 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRG 596
+L +ILLLDE ++ LD + ++++ L + + T ++ R+ + D VI
Sbjct: 170 VLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEEN 229
Query: 597 KI 598
K+
Sbjct: 230 KV 231
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ 1119
+ +++ I G+ V L+G +GSGKST++S R + + G I +DGV + L+ R+
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GEIQIDGVSWDSITLEQWRK 94
Query: 1120 QMGLVSQEPVLFNDTIRANI 1139
G++ Q+ +F+ T R N+
Sbjct: 95 AFGVIPQKVFIFSGTFRKNL 114
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/204 (35%), Positives = 108/204 (52%), Gaps = 15/204 (7%)
Query: 417 LVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK--EFQLQWIRKKIGLVSQEPVLFTG 474
++G SGSGKST + + D GE++IDGINLK + L +R+++G+V Q LF
Sbjct: 55 VIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPH 114
Query: 475 -SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533
++ +NI A A A + +DK+ G+ + LSGGQ QR+AI
Sbjct: 115 MTVLNNITLAPMKVRKWPREKAE--AKAMELLDKV--GLKDKAHAYPDSLSGGQAQRVAI 170
Query: 534 ARAILKDPRILLLDEATSALDAESEKVVQEALD--RIMVNR--TTVIVAHRLSTVRN-AD 588
ARA+ +P+I+L DE TSALD E +V E L + + N T V+V H + R D
Sbjct: 171 ARALAMEPKIMLFDEPTSALDPE---MVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGD 227
Query: 589 MIAVIHRGKIVEKGTHSKLVEDPE 612
+ + G I+E+G L + P+
Sbjct: 228 RVLFMDGGYIIEEGKPEDLFDRPQ 251
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 58/100 (58%), Gaps = 6/100 (6%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I++H + + S ++V + +N+ IR G+ V ++G SGSGKST + L D D G I
Sbjct: 25 IDVHQLKKSFGS---LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI 81
Query: 1103 TLDGVEI--QKLQLKWLRQQMGLVSQEPVLF-NDTIRANI 1139
+DG+ + + L +R+++G+V Q LF + T+ NI
Sbjct: 82 IIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNI 121
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/204 (35%), Positives = 108/204 (52%), Gaps = 15/204 (7%)
Query: 417 LVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK--EFQLQWIRKKIGLVSQEPVLFTG 474
++G SGSGKST + + D GE++IDGINLK + L +R+++G+V Q LF
Sbjct: 34 VIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPH 93
Query: 475 -SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533
++ +NI A A A + +DK+ G+ + LSGGQ QR+AI
Sbjct: 94 MTVLNNITLAPMKVRKWPREKAE--AKAMELLDKV--GLKDKAHAYPDSLSGGQAQRVAI 149
Query: 534 ARAILKDPRILLLDEATSALDAESEKVVQEALD--RIMVNR--TTVIVAHRLSTVRN-AD 588
ARA+ +P+I+L DE TSALD E +V E L + + N T V+V H + R D
Sbjct: 150 ARALAMEPKIMLFDEPTSALDPE---MVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGD 206
Query: 589 MIAVIHRGKIVEKGTHSKLVEDPE 612
+ + G I+E+G L + P+
Sbjct: 207 RVLFMDGGYIIEEGKPEDLFDRPQ 230
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 58/100 (58%), Gaps = 6/100 (6%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I++H + + S ++V + +N+ IR G+ V ++G SGSGKST + L D D G I
Sbjct: 4 IDVHQLKKSFGS---LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI 60
Query: 1103 TLDGVEI--QKLQLKWLRQQMGLVSQEPVLF-NDTIRANI 1139
+DG+ + + L +R+++G+V Q LF + T+ NI
Sbjct: 61 IIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNI 100
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 93.2 bits (230), Expect = 7e-19, Method: Composition-based stats.
Identities = 69/208 (33%), Positives = 108/208 (51%), Gaps = 15/208 (7%)
Query: 417 LVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-S 475
L+G +G+GKS + LI P GEV ++G ++ + R+ IG V Q+ LF S
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALFPHLS 86
Query: 476 IKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535
+ NIAYG + + +KL GI L+ +LSGG++QR+A+AR
Sbjct: 87 VYRNIAYG-----LRNVERVERDRRVREMAEKL--GIAHLLDRKPARLSGGERQRVALAR 139
Query: 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAH----RLSTVRNADMIA 591
A++ PR+LLLDE SA+D +++ V+ E L R + V + H + AD +A
Sbjct: 140 ALVIQPRLLLLDEPLSAVDLKTKGVLMEEL-RFVQREFDVPILHVTHDLIEAAMLADEVA 198
Query: 592 VIHRGKIVEKGTHSKLVEDPEGAYSQLI 619
V+ G+IVEKG +L G ++ +
Sbjct: 199 VMLNGRIVEKGKLKELFSAKNGEVAEFL 226
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 1061 FRDLNLKIRAGKT-VALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ 1119
FR LN+ G+ L+G +G+GKS + L+ PD G + L+G +I L + R+
Sbjct: 14 FR-LNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RR 70
Query: 1120 QMGLVSQEPVLF-NDTIRANIAYG 1142
+G V Q+ LF + ++ NIAYG
Sbjct: 71 GIGFVPQDYALFPHLSVYRNIAYG 94
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 102/195 (52%), Gaps = 19/195 (9%)
Query: 416 ALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGS 475
A+ G +G+GK++++ +I +P G++ G +I SQ + G+
Sbjct: 50 AVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQFSWIMPGT 96
Query: 476 IKDNIAYG--KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533
IK+NI +G D+ + A +L I K + + ++GE G LSGGQ+ RI++
Sbjct: 97 IKENIIFGVSYDEYRYRSVIKACQLEED---ISKFAEKDNIVLGEGGITLSGGQRARISL 153
Query: 534 ARAILKDPRILLLDEATSALDAESEK-VVQEALDRIMVNRTTVIVAHRLSTVRNADMIAV 592
ARA+ KD + LLD LD +EK + + + ++M N+T ++V ++ ++ AD I +
Sbjct: 154 ARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILI 213
Query: 593 IHRGKIVEKGTHSKL 607
+H G GT S+L
Sbjct: 214 LHEGSSYFYGTFSEL 228
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 13/87 (14%)
Query: 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ 1119
V +D+N KI G+ +A+ G +G+GK++++ ++ +P G I G
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 81
Query: 1120 QMGLVSQEPVLFNDTIRANIAYGKGGD 1146
++ SQ + TI+ NI +G D
Sbjct: 82 RISFCSQFSWIMPGTIKENIIFGVSYD 108
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 118/208 (56%), Gaps = 15/208 (7%)
Query: 417 LVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-S 475
++G +G+GK+ + LI F+ P +G +L+DG ++ + + + I V Q LF +
Sbjct: 31 ILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIAFVYQNYSLFPHMN 88
Query: 476 IKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535
+K N+ +G ++I+ + + A+ + I+ L+ + LSGG++QR+A+AR
Sbjct: 89 VKKNLEFG---MRMKKIKDPKRVLDTARDLK-----IEHLLDRNPLTLSGGEQQRVALAR 140
Query: 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVI-VAHRLSTVR-NADMIAV 592
A++ +P+ILLLDE SALD +++ +E L + N+ TV+ + H + R AD IAV
Sbjct: 141 ALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAV 200
Query: 593 IHRGKIVEKGTHSKLVEDP-EGAYSQLI 619
+ GK+++ G ++ E P EG + +
Sbjct: 201 VMDGKLIQVGKPEEIFEKPVEGRVASFV 228
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 48/81 (59%), Gaps = 3/81 (3%)
Query: 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122
+L+LK+ +G+ ++G +G+GK+ + L+ F+ PD+G I LDG ++ L + + +
Sbjct: 18 NLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIA 75
Query: 1123 LVSQEPVLF-NDTIRANIAYG 1142
V Q LF + ++ N+ +G
Sbjct: 76 FVYQNYSLFPHMNVKKNLEFG 96
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 102/195 (52%), Gaps = 19/195 (9%)
Query: 416 ALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGS 475
A+ G +G+GK++++ +I +P G++ G +I SQ + G+
Sbjct: 38 AVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQFSWIMPGT 84
Query: 476 IKDNIAYG--KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533
IK+NI +G D+ + A +L I K + + ++GE G LSGGQ+ RI++
Sbjct: 85 IKENIIFGVSYDEYRYRSVIKACQLEED---ISKFAEKDNIVLGEGGITLSGGQRARISL 141
Query: 534 ARAILKDPRILLLDEATSALDAESEK-VVQEALDRIMVNRTTVIVAHRLSTVRNADMIAV 592
ARA+ KD + LLD LD +EK + + + ++M N+T ++V ++ ++ AD I +
Sbjct: 142 ARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILI 201
Query: 593 IHRGKIVEKGTHSKL 607
+H G GT S+L
Sbjct: 202 LHEGSSYFYGTFSEL 216
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 13/87 (14%)
Query: 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ 1119
V +D+N KI G+ +A+ G +G+GK++++ ++ +P G I G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 69
Query: 1120 QMGLVSQEPVLFNDTIRANIAYGKGGD 1146
++ SQ + TI+ NI +G D
Sbjct: 70 RISFCSQFSWIMPGTIKENIIFGVSYD 96
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 91.3 bits (225), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 102/195 (52%), Gaps = 19/195 (9%)
Query: 416 ALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGS 475
A+ G +GSGK++++ LI + G + G ++ SQ + G+
Sbjct: 68 AITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVSFCSQFSWIMPGT 114
Query: 476 IKDNIAYG--KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533
IK+NI +G D+ + + A +L I K + +T++GE G LSGGQ+ RI++
Sbjct: 115 IKENIIFGVSYDEYRYKSVVKACQLQQD---ITKFAEQDNTVLGEGGVTLSGGQRARISL 171
Query: 534 ARAILKDPRILLLDEATSALDA-ESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAV 592
ARA+ KD + LLD LD E+V + + ++M N+T ++V ++ +R AD I +
Sbjct: 172 ARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILI 231
Query: 593 IHRGKIVEKGTHSKL 607
+H+G GT S+L
Sbjct: 232 LHQGSSYFYGTFSEL 246
Score = 36.6 bits (83), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 13/109 (11%)
Query: 1038 DVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP 1097
D K + ++VSF + V +++NL I G+ +A+ G +GSGK++++ L+ +
Sbjct: 31 DRKHXSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEA 90
Query: 1098 DAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGD 1146
G I G ++ SQ + TI+ NI +G D
Sbjct: 91 SEGIIKHSG-------------RVSFCSQFSWIMPGTIKENIIFGVSYD 126
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 91.3 bits (225), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 102/195 (52%), Gaps = 19/195 (9%)
Query: 416 ALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGS 475
A+ G +GSGK++++ LI + G + G ++ SQ + G+
Sbjct: 68 AITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVSFCSQFSWIMPGT 114
Query: 476 IKDNIAYG--KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533
IK+NI +G D+ + + A +L I K + +T++GE G LSGGQ+ RI++
Sbjct: 115 IKENIIFGVSYDEYRYKSVVKACQLQQD---ITKFAEQDNTVLGEGGVTLSGGQRARISL 171
Query: 534 ARAILKDPRILLLDEATSALDA-ESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAV 592
ARA+ KD + LLD LD E+V + + ++M N+T ++V ++ +R AD I +
Sbjct: 172 ARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILI 231
Query: 593 IHRGKIVEKGTHSKL 607
+H+G GT S+L
Sbjct: 232 LHQGSSYFYGTFSEL 246
Score = 37.0 bits (84), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 13/109 (11%)
Query: 1038 DVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP 1097
D K + ++VSF + V +++NL I G+ +A+ G +GSGK++++ L+ +
Sbjct: 31 DRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEA 90
Query: 1098 DAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGD 1146
G I G ++ SQ + TI+ NI +G D
Sbjct: 91 SEGIIKHSG-------------RVSFCSQFSWIMPGTIKENIIFGVSYD 126
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 90.9 bits (224), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 107/201 (53%), Gaps = 15/201 (7%)
Query: 417 LVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-S 475
L+G SGSGK+T++ LI P G+V I G + + Q ++ +GLV Q LF +
Sbjct: 46 LLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQ--KRNVGLVFQNYALFQHMT 103
Query: 476 IKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535
+ DN+++G + + + + +F+ +++ +LSGGQ+QR+A+AR
Sbjct: 104 VYDNVSFGLREKRVPKDEMDARVRELLRFMR-----LESYANRFPHELSGGQQQRVALAR 158
Query: 536 AILKDPRILLLDEATSALDAESEK----VVQEALDRIMVNRTTVIVAH-RLSTVRNADMI 590
A+ P++LL DE +A+D + + V++ D + V T+V V H + + AD +
Sbjct: 159 ALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGV--TSVFVTHDQEEALEVADRV 216
Query: 591 AVIHRGKIVEKGTHSKLVEDP 611
V+H G + + GT ++ E P
Sbjct: 217 LVLHEGNVEQFGTPEEVYEKP 237
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 1062 RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121
R ++ +IR G+ V L+G SGSGK+T++ L+ P G + + G + L + ++ +
Sbjct: 32 RGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQ--KRNV 89
Query: 1122 GLVSQEPVLFND-TIRANIAYG 1142
GLV Q LF T+ N+++G
Sbjct: 90 GLVFQNYALFQHMTVYDNVSFG 111
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 89.7 bits (221), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 100/194 (51%), Gaps = 18/194 (9%)
Query: 416 ALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGS 475
A+ G +G+GK++++ +I +P G++ G +I SQ + G+
Sbjct: 68 AVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQNSWIMPGT 114
Query: 476 IKDNI-AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534
IK+NI D+ + A +L I K + + ++GE G LSGGQ+ RI++A
Sbjct: 115 IKENIIGVSYDEYRYRSVIKACQLEED---ISKFAEKDNIVLGEGGITLSGGQRARISLA 171
Query: 535 RAILKDPRILLLDEATSALDAESEK-VVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVI 593
RA+ KD + LLD LD +EK + + + ++M N+T ++V ++ ++ AD I ++
Sbjct: 172 RAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILIL 231
Query: 594 HRGKIVEKGTHSKL 607
H G GT S+L
Sbjct: 232 HEGSSYFYGTFSEL 245
Score = 37.4 bits (85), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 13/80 (16%)
Query: 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ 1119
V +D+N KI G+ +A+ G +G+GK++++ ++ +P G I G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 1120 QMGLVSQEPVLFNDTIRANI 1139
++ SQ + TI+ NI
Sbjct: 100 RISFCSQNSWIMPGTIKENI 119
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 89.7 bits (221), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 101/195 (51%), Gaps = 19/195 (9%)
Query: 416 ALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGS 475
A+ G +GSGK++++ LI + G + G ++ SQ + G+
Sbjct: 68 AITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVSFCSQFSWIMPGT 114
Query: 476 IKDNIAYG--KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533
IK+NI G D+ + + A +L I K + +T++GE G LSGGQ+ RI++
Sbjct: 115 IKENIIRGVSYDEYRYKSVVKACQLQQD---ITKFAEQDNTVLGEGGVTLSGGQRARISL 171
Query: 534 ARAILKDPRILLLDEATSALDA-ESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAV 592
ARA+ KD + LLD LD E+V + + ++M N+T ++V ++ +R AD I +
Sbjct: 172 ARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILI 231
Query: 593 IHRGKIVEKGTHSKL 607
+H+G GT S+L
Sbjct: 232 LHQGSSYFYGTFSEL 246
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%)
Query: 1038 DVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP 1097
D K + ++VSF + V +++NL I G+ +A+ G +GSGK++++ L+ +
Sbjct: 31 DRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEA 90
Query: 1098 DAGHITLDGVEIQKLQLKWL 1117
G I G Q W+
Sbjct: 91 SEGIIKHSGRVSFCSQFSWI 110
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 101/195 (51%), Gaps = 19/195 (9%)
Query: 416 ALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGS 475
A+ G +GSGK++++ LI + G + G ++ SQ + G+
Sbjct: 68 AITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVSFCSQFSWIMPGT 114
Query: 476 IKDNIAYG--KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533
IK+NI G D+ + + A +L I K + +T++GE G LSGGQ+ RI++
Sbjct: 115 IKENIISGVSYDEYRYKSVVKACQLQQD---ITKFAEQDNTVLGEGGVTLSGGQRARISL 171
Query: 534 ARAILKDPRILLLDEATSALDA-ESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAV 592
ARA+ KD + LLD LD E+V + + ++M N+T ++V ++ +R AD I +
Sbjct: 172 ARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILI 231
Query: 593 IHRGKIVEKGTHSKL 607
+H+G GT S+L
Sbjct: 232 LHQGSSYFYGTFSEL 246
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%)
Query: 1038 DVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP 1097
D K + ++VSF + V +++NL I G+ +A+ G +GSGK++++ L+ +
Sbjct: 31 DRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEA 90
Query: 1098 DAGHITLDGVEIQKLQLKWL 1117
G I G Q W+
Sbjct: 91 SEGIIKHSGRVSFCSQFSWI 110
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 101/195 (51%), Gaps = 19/195 (9%)
Query: 416 ALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGS 475
A+ G +G+GK++++ +I +P G++ G +I SQ + G+
Sbjct: 68 AVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQFSWIMPGT 114
Query: 476 IKDNIAYG--KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533
IK+NI G D+ + A +L I K + + ++GE G LSGGQ+ RI++
Sbjct: 115 IKENIIAGVSYDEYRYRSVIKACQLEED---ISKFAEKDNIVLGEGGITLSGGQRARISL 171
Query: 534 ARAILKDPRILLLDEATSALDAESEK-VVQEALDRIMVNRTTVIVAHRLSTVRNADMIAV 592
ARA+ KD + LLD LD +EK + + + ++M N+T ++V ++ ++ AD I +
Sbjct: 172 ARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILI 231
Query: 593 IHRGKIVEKGTHSKL 607
+H G GT S+L
Sbjct: 232 LHEGSSYFYGTFSEL 246
Score = 37.4 bits (85), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%)
Query: 1048 VSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGV 1107
+SF S V +D+N KI G+ +A+ G +G+GK++++ ++ +P G I G
Sbjct: 41 LSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR 100
Query: 1108 EIQKLQLKWL 1117
Q W+
Sbjct: 101 ISFCSQFSWI 110
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 100/194 (51%), Gaps = 18/194 (9%)
Query: 416 ALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGS 475
A+ G +G+GK++++ +I +P G++ G +I SQ + G+
Sbjct: 68 AVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQNSWIMPGT 114
Query: 476 IKDNI-AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534
IK+NI D+ + A +L I K + + ++GE G LSGGQ+ RI++A
Sbjct: 115 IKENIIGVSYDEYRYRSVIKACQLEED---ISKFAEKDNIVLGEGGITLSGGQRARISLA 171
Query: 535 RAILKDPRILLLDEATSALDAESEK-VVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVI 593
RA+ KD + LLD LD +EK + + + ++M N+T ++V ++ ++ AD I ++
Sbjct: 172 RAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILIL 231
Query: 594 HRGKIVEKGTHSKL 607
H G GT S+L
Sbjct: 232 HEGSSYFYGTFSEL 245
Score = 37.7 bits (86), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 13/92 (14%)
Query: 1048 VSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGV 1107
+SF S V +D+N KI G+ +A+ G +G+GK++++ ++ +P G I G
Sbjct: 41 LSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG- 99
Query: 1108 EIQKLQLKWLRQQMGLVSQEPVLFNDTIRANI 1139
++ SQ + TI+ NI
Sbjct: 100 ------------RISFCSQNSWIMPGTIKENI 119
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 100/194 (51%), Gaps = 18/194 (9%)
Query: 416 ALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGS 475
A+ G +G+GK++++ +I +P G++ G +I SQ + G+
Sbjct: 38 AVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQFSWIMPGT 84
Query: 476 IKDNI-AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534
IK+NI D+ + A +L I K + + ++GE G LSGGQ+ RI++A
Sbjct: 85 IKENIIGVSYDEYRYRSVIKACQLEED---ISKFAEKDNIVLGEGGITLSGGQRARISLA 141
Query: 535 RAILKDPRILLLDEATSALDAESEK-VVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVI 593
RA+ KD + LLD LD +EK + + + ++M N+T ++V ++ ++ AD I ++
Sbjct: 142 RAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILIL 201
Query: 594 HRGKIVEKGTHSKL 607
H G GT S+L
Sbjct: 202 HEGSSYFYGTFSEL 215
Score = 37.7 bits (86), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 19/105 (18%)
Query: 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW--- 1116
V +D+N KI G+ +A+ G +G+GK++++ ++ +P G I G Q W
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMP 82
Query: 1117 --LRQQMGLVSQEPVLFNDTIRA--------------NIAYGKGG 1145
+++ + VS + + I+A NI G+GG
Sbjct: 83 GTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 127
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 100/194 (51%), Gaps = 18/194 (9%)
Query: 416 ALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGS 475
A+ G +GSGK++++ LI + G + G ++ SQ + G+
Sbjct: 68 AITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVSFCSQFSWIMPGT 114
Query: 476 IKDNI-AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534
IK+NI D+ + + A +L I K + +T++GE G LSGGQ+ RI++A
Sbjct: 115 IKENIIGVSYDEYRYKSVVKACQLQQD---ITKFAEQDNTVLGEGGVTLSGGQRARISLA 171
Query: 535 RAILKDPRILLLDEATSALDA-ESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVI 593
RA+ KD + LLD LD E+V + + ++M N+T ++V ++ +R AD I ++
Sbjct: 172 RAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILIL 231
Query: 594 HRGKIVEKGTHSKL 607
H+G GT S+L
Sbjct: 232 HQGSSYFYGTFSEL 245
Score = 35.0 bits (79), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%)
Query: 1038 DVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP 1097
D K + ++VSF + V +++NL I G+ +A+ G +GSGK++++ L+ +
Sbjct: 31 DRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEA 90
Query: 1098 DAGHITLDGVEIQKLQLKWL 1117
G I G Q W+
Sbjct: 91 SEGIIKHSGRVSFCSQFSWI 110
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 101/195 (51%), Gaps = 19/195 (9%)
Query: 416 ALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGS 475
A+ G +G+GK++++ +I +P G++ G +I SQ + G+
Sbjct: 68 AVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQFSWIMPGT 114
Query: 476 IKDNIAYG--KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533
IK+NI +G D+ + A +L I K + + ++GE G LS GQ+ +I++
Sbjct: 115 IKENIIFGVSYDEYRYRSVIKACQLEED---ISKFAEKDNIVLGEGGITLSEGQQAKISL 171
Query: 534 ARAILKDPRILLLDEATSALDAESEK-VVQEALDRIMVNRTTVIVAHRLSTVRNADMIAV 592
ARA+ KD + LLD LD +EK + + + ++M N+T ++V ++ ++ AD I +
Sbjct: 172 ARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILI 231
Query: 593 IHRGKIVEKGTHSKL 607
+H G GT S+L
Sbjct: 232 LHEGSSYFYGTFSEL 246
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 13/83 (15%)
Query: 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ 1119
V +D+N KI G+ +A+ G +G+GK++++ ++ +P G I G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 1120 QMGLVSQEPVLFNDTIRANIAYG 1142
++ SQ + TI+ NI +G
Sbjct: 100 RISFCSQFSWIMPGTIKENIIFG 122
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 112/217 (51%), Gaps = 27/217 (12%)
Query: 419 GQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEP--VLFTGSI 476
G +GSGKST++ ++ +P +G+VL DG K ++ IR+ IG+ Q P F +
Sbjct: 42 GNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYE---IRRNIGIAFQYPEDQFFAERV 98
Query: 477 KDNIAYG-----KDDATTEEIRVATELA--NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529
D +A+ D ++ A E + F D++P LSGG+K+
Sbjct: 99 FDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP-----------FFLSGGEKR 147
Query: 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI-MVNRTTVIVAHRLSTVRN-A 587
R+AIA I+ +P IL+LDE LD E + + +++ + +T ++++H + TV N
Sbjct: 148 RVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHV 207
Query: 588 DMIAVIHRGKIVEKGTHSKLVE--DPEGAYSQLIRLQ 622
D + V+ +GK V GT + +E DP S+++ ++
Sbjct: 208 DRVVVLEKGKKVFDGTRMEFLEKYDPRFFTSKMLVMR 244
Score = 37.4 bits (85), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 1041 GEIELHHVS--FKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPD 1098
G IE+ +VS F + + + +++L I G+ + + G +GSGKST++ ++ +P
Sbjct: 3 GRIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT 62
Query: 1099 AGHITLDGVEIQKLQLKWLRQQMGLVSQEP 1128
+G + DG ++ + +R+ +G+ Q P
Sbjct: 63 SGDVLYDG---ERKKGYEIRRNIGIAFQYP 89
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 112/217 (51%), Gaps = 27/217 (12%)
Query: 419 GQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEP--VLFTGSI 476
G +GSGKST++ ++ +P +G+VL DG K ++ IR+ IG+ Q P F +
Sbjct: 40 GNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYE---IRRNIGIAFQYPEDQFFAERV 96
Query: 477 KDNIAYG-----KDDATTEEIRVATELA--NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529
D +A+ D ++ A E + F D++P LSGG+K+
Sbjct: 97 FDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP-----------FFLSGGEKR 145
Query: 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI-MVNRTTVIVAHRLSTVRN-A 587
R+AIA I+ +P IL+LDE LD E + + +++ + +T ++++H + TV N
Sbjct: 146 RVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHV 205
Query: 588 DMIAVIHRGKIVEKGTHSKLVE--DPEGAYSQLIRLQ 622
D + V+ +GK V GT + +E DP S+++ ++
Sbjct: 206 DRVVVLEKGKKVFDGTRMEFLEKYDPRFFTSKMLVMR 242
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLR 1118
+ +++L I G+ + + G +GSGKST++ ++ +P +G + DG ++ + +R
Sbjct: 21 KALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDG---ERKKGYEIR 77
Query: 1119 QQMGLVSQEP 1128
+ +G+ Q P
Sbjct: 78 RNIGIAFQYP 87
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 84.3 bits (207), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 119/224 (53%), Gaps = 25/224 (11%)
Query: 413 TTAALVGQSGSGKSTVISLIERFYDPQ----AGEVLIDG---INLKEFQLQWIR-KKIGL 464
+ A+VG+S SGKST+I + + P +G VL G + ++E +L+ IR K+I L
Sbjct: 35 SVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELRKIRWKEIAL 94
Query: 465 VSQ------EPVL-FTGSIKDNI-AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLV 516
V Q P + KD + A+G + +E I A+E + + ++
Sbjct: 95 VPQAAQQSLNPTMKVIEHFKDTVEAHGVRWSHSELIEKASEKLRMVRL------NPEAVL 148
Query: 517 GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE-KVVQEALDRIMVNRTTV 575
+ QLSGG KQR+ IA A+L DP +L+LDE TSALD ++ ++Q + + + T+
Sbjct: 149 NSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKMLKITL 208
Query: 576 I-VAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617
I V H ++ AD +AVI+ G +VE + ++ ++P Y++
Sbjct: 209 IFVTHDIAVAAELADKVAVIYGGNLVEYNSTFQIFKNPLHPYTR 252
Score = 33.1 bits (74), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 19/94 (20%)
Query: 1064 LNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPD----AGHITLDGVEIQKLQLKWLR- 1118
++L I A+VGES SGKST++ + + P+ +G + G ++ ++ + LR
Sbjct: 27 ISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELRK 86
Query: 1119 ---QQMGLVSQ------EPVL-----FNDTIRAN 1138
+++ LV Q P + F DT+ A+
Sbjct: 87 IRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAH 120
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 99/194 (51%), Gaps = 18/194 (9%)
Query: 416 ALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGS 475
A+ G +G+GK++++ +I +P G++ G +I SQ + G+
Sbjct: 68 AVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQFSWIMPGT 114
Query: 476 IKDNI-AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534
IK+NI D+ + A +L I K + + ++GE G LS GQ+ +I++A
Sbjct: 115 IKENIIGVSYDEYRYRSVIKACQLEED---ISKFAEKDNIVLGEGGITLSEGQQAKISLA 171
Query: 535 RAILKDPRILLLDEATSALDAESEK-VVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVI 593
RA+ KD + LLD LD +EK + + + ++M N+T ++V ++ ++ AD I ++
Sbjct: 172 RAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILIL 231
Query: 594 HRGKIVEKGTHSKL 607
H G GT S+L
Sbjct: 232 HEGSSYFYGTFSEL 245
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 19/121 (15%)
Query: 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW--- 1116
V +D+N KI G+ +A+ G +G+GK++++ ++ +P G I G Q W
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMP 112
Query: 1117 --LRQQMGLVSQEPVLFNDTIRA--------------NIAYGKGGDATEAEIQAASEMAN 1160
+++ + VS + + I+A NI G+GG QA +A
Sbjct: 113 GTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKISLAR 172
Query: 1161 A 1161
A
Sbjct: 173 A 173
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 112/207 (54%), Gaps = 22/207 (10%)
Query: 417 LVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI----RKKIGLVSQEPVLF 472
++G SG+GK+T + +I P GE+ D L + I +KIG+V Q L+
Sbjct: 36 ILGPSGAGKTTFMRIIAGLDVPSTGELYFDD-RLVASNGKLIVPPEDRKIGMVFQTWALY 94
Query: 473 TG-SIKDNIAYGKDDA--TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529
+ +NIA+ + + EEIR E AK +D I ++ +LSGGQ+Q
Sbjct: 95 PNLTAFENIAFPLTNMKMSKEEIRKRVE--EVAKILD-----IHHVLNHFPRELSGGQQQ 147
Query: 530 RIAIARAILKDPRILLLDEATSALDAE----SEKVVQEALDRIMVNRTTVIVAHRLSTVR 585
R+A+ARA++KDP +LLLDE S LDA + +V+E R+ V T ++V+H + +
Sbjct: 148 RVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGV--TLLVVSHDPADIF 205
Query: 586 N-ADMIAVIHRGKIVEKGTHSKLVEDP 611
AD + V+ +GK+V+ G L ++P
Sbjct: 206 AIADRVGVLVKGKLVQVGKPEDLYDNP 232
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ---KLQLKWLRQ 1119
++N+ I G+ ++G SG+GK+T + ++ P G + D + KL + +
Sbjct: 23 NVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82
Query: 1120 QMGLVSQEPVLF-NDTIRANIAY 1141
++G+V Q L+ N T NIA+
Sbjct: 83 KIGMVFQTWALYPNLTAFENIAF 105
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 110/203 (54%), Gaps = 15/203 (7%)
Query: 417 LVGQSGSGKSTVISLIERFYDPQAGEVLIDGINL--KEFQLQWIRKKIGLVSQEPVLFTG 474
++G SG GK+T++ + F P +GE+ + G + K L +++G + QE VLF
Sbjct: 35 IIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPH 94
Query: 475 -SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533
++ NIAYG + R A E ++ GI L G + +LSGGQ+QR A+
Sbjct: 95 LTVYRNIAYGLGNGKG---RTAQERQRIEAMLEL--TGISELAGRYPHELSGGQQQRAAL 149
Query: 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNR----TTVIVAH-RLSTVRNAD 588
ARA+ DP ++LLDE SALD + + ++E D I R + V V+H R ++ AD
Sbjct: 150 ARALAPDPELILLDEPFSALDEQLRRQIRE--DMIAALRANGKSAVFVSHDREEALQYAD 207
Query: 589 MIAVIHRGKIVEKGTHSKLVEDP 611
IAV+ +G+I++ + +L P
Sbjct: 208 RIAVMKQGRILQTASPHELYRQP 230
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 59/105 (56%), Gaps = 6/105 (5%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+ + H+S + + P V D++L + G+ + ++G SG GK+T++ L F PD+G I
Sbjct: 5 LHIGHLSKSFQNTP---VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI 61
Query: 1103 TLDGVEI--QKLQLKWLRQQMGLVSQEPVLFND-TIRANIAYGKG 1144
+L G I + L +++G + QE VLF T+ NIAYG G
Sbjct: 62 SLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLG 106
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 80.1 bits (196), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 99/196 (50%), Gaps = 12/196 (6%)
Query: 417 LVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPV--LFTG 474
+VG++GSGK+T++ ++ AGE+ +DG F L RK +G V Q P +
Sbjct: 42 VVGKNGSGKTTLLKILAGLL-AAAGEIFLDGSPADPFLL---RKNVGYVFQNPSSQIIGA 97
Query: 475 SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534
++++++A+ + +E + + + + G+ L LSGGQKQR+AIA
Sbjct: 98 TVEEDVAFSLEIMGLDESEMRKRIKKVLELV-----GLSGLAAADPLNLSGGQKQRLAIA 152
Query: 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMVN-RTTVIVAHRLSTVRNADMIAVI 593
+ +D R L LDE S LD S++ + + L+ + + ++V H L + + D I I
Sbjct: 153 SMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTHELEYLDDMDFILHI 212
Query: 594 HRGKIVEKGTHSKLVE 609
G I G+ + VE
Sbjct: 213 SNGTIDFCGSWEEFVE 228
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 9/101 (8%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IEL+ VSF+Y V +D+N + GK +VG++GSGK+T++ +L AG I
Sbjct: 12 IELNSVSFRYNGD---YVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLL-AAAGEI 67
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPV--LFNDTIRANIAY 1141
LDG LR+ +G V Q P + T+ ++A+
Sbjct: 68 FLDGSPADPFL---LRKNVGYVFQNPSSQIIGATVEEDVAF 105
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 80.1 bits (196), Expect = 6e-15, Method: Composition-based stats.
Identities = 63/199 (31%), Positives = 103/199 (51%), Gaps = 26/199 (13%)
Query: 416 ALVGQSGSGKSTVISLIERFYDPQAGEVLIDGI---NLKEFQLQWIRK-KIGLVSQE--- 468
++ G SGSGKST +++I P GEV ID I +L + +L IR+ KIG V Q+
Sbjct: 35 SIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNL 94
Query: 469 -PVLFTGSIKDNI------AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGT 521
P+L + +N+ Y + E + A E A+ ++
Sbjct: 95 IPLL---TALENVELPLIFKYRGAXSGEERRKRALECLKXAELEERF-------ANHKPN 144
Query: 522 QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVN--RTTVIVAH 579
QLSGGQ+QR+AIARA+ +P I+L DE T ALD+++ + + + L ++ +T V+V H
Sbjct: 145 QLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTH 204
Query: 580 RLSTVRNADMIAVIHRGKI 598
++ R + I + G++
Sbjct: 205 DINVARFGERIIYLKDGEV 223
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 1043 IELHHVSFKYPSRPDV-QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
I+L +V+ Y ++ +++NL I+ G+ V++ G SGSGKST ++++ P G
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 1102 ITLDGVEIQKLQ----LKWLRQQMGLVSQE 1127
+ +D ++ L K R ++G V Q+
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQ 91
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 79.7 bits (195), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 111/207 (53%), Gaps = 22/207 (10%)
Query: 417 LVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI----RKKIGLVSQEPVLF 472
++G SG+GK+T + +I P GE+ D L + I +KIG+V Q L+
Sbjct: 36 ILGPSGAGKTTFMRIIAGLDVPSTGELYFDD-RLVASNGKLIVPPEDRKIGMVFQTWALY 94
Query: 473 TG-SIKDNIAYGKDDA--TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529
+ +NIA+ + + EEIR E AK +D I ++ +LSG Q+Q
Sbjct: 95 PNLTAFENIAFPLTNMKMSKEEIRKRVE--EVAKILD-----IHHVLNHFPRELSGAQQQ 147
Query: 530 RIAIARAILKDPRILLLDEATSALDAE----SEKVVQEALDRIMVNRTTVIVAHRLSTVR 585
R+A+ARA++KDP +LLLDE S LDA + +V+E R+ V T ++V+H + +
Sbjct: 148 RVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGV--TLLVVSHDPADIF 205
Query: 586 N-ADMIAVIHRGKIVEKGTHSKLVEDP 611
AD + V+ +GK+V+ G L ++P
Sbjct: 206 AIADRVGVLVKGKLVQVGKPEDLYDNP 232
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ---KLQLKWLRQ 1119
++N+ I G+ ++G SG+GK+T + ++ P G + D + KL + +
Sbjct: 23 NVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82
Query: 1120 QMGLVSQEPVLF-NDTIRANIAY 1141
++G+V Q L+ N T NIA+
Sbjct: 83 KIGMVFQTWALYPNLTAFENIAF 105
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 108/210 (51%), Gaps = 23/210 (10%)
Query: 416 ALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG- 474
L+G SG GK+T + +I +P G + ++ + + I +V Q ++
Sbjct: 42 VLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNISMVFQSYAVWPHM 99
Query: 475 SIKDNIAYG------KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528
++ +NIA+ D + +R A EL + +++ P QLSGGQ+
Sbjct: 100 TVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP-----------AQLSGGQR 148
Query: 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAH-RLSTVR 585
QR+A+ARAI+ +P +LL+DE S LDA+ ++ + ++ + TT+ V H ++ +
Sbjct: 149 QRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMT 208
Query: 586 NADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615
D IAV++RG++++ G+ +++ P +
Sbjct: 209 MGDRIAVMNRGQLLQIGSPTEVYLRPNSVF 238
Score = 34.3 bits (77), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 1064 LNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGL 1123
LNL I+ G+ + L+G SG GK+T + ++ +P G I ++ L K + + +
Sbjct: 31 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNISM 88
Query: 1124 VSQEPVLF-NDTIRANIAY 1141
V Q ++ + T+ NIA+
Sbjct: 89 VFQSYAVWPHMTVYENIAF 107
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 108/210 (51%), Gaps = 23/210 (10%)
Query: 416 ALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG- 474
L+G SG GK+T + +I +P G + ++ L + I +V Q ++
Sbjct: 41 VLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVT--YLPPKDRNISMVFQSYAVWPHM 98
Query: 475 SIKDNIAYG------KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528
++ +NIA+ D + +R A EL + +++ P QLSGGQ+
Sbjct: 99 TVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP-----------AQLSGGQR 147
Query: 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAH-RLSTVR 585
QR+A+ARAI+ +P +LL+DE S LDA+ ++ + ++ + TT+ V H ++ +
Sbjct: 148 QRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMT 207
Query: 586 NADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615
D IAV++RG++++ G+ +++ P +
Sbjct: 208 MGDRIAVMNRGQLLQIGSPTEVYLRPNSVF 237
Score = 34.3 bits (77), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 1064 LNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGL 1123
LNL I+ G+ + L+G SG GK+T + ++ +P G I ++ L K + + +
Sbjct: 30 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNISM 87
Query: 1124 VSQEPVLF-NDTIRANIAY 1141
V Q ++ + T+ NIA+
Sbjct: 88 VFQSYAVWPHMTVYENIAF 106
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 77.8 bits (190), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 105/194 (54%), Gaps = 16/194 (8%)
Query: 416 ALVGQSGSGKSTVISLIERFYDPQAGEVLIDGI---NLKEFQLQWIRK-KIGLVSQE--- 468
+++G SGSGKST++++I P GEV ID I +L + +L IR+ KIG V Q+
Sbjct: 35 SIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNL 94
Query: 469 -PVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526
P+L +++ + + A + E R L K+ + + QLSGG
Sbjct: 95 IPLLTALENVELPLIFKYRGAMSGEERRKRALECL-----KMAELEERFANHKPNQLSGG 149
Query: 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVN--RTTVIVAHRLSTV 584
Q+QR+AIARA+ +P I+L D+ T ALD+++ + + + L ++ +T V+V H ++
Sbjct: 150 QQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA 209
Query: 585 RNADMIAVIHRGKI 598
R + I + G++
Sbjct: 210 RFGERIIYLKDGEV 223
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Query: 1043 IELHHVSFKYPSRPDV-QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
I+L +V+ Y ++ +++NL I+ G+ V+++G SGSGKST+++++ P G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 1102 ITLDGVEIQKLQ----LKWLRQQMGLVSQE 1127
+ +D ++ L K R ++G V Q+
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQ 91
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 77.0 bits (188), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 105/194 (54%), Gaps = 16/194 (8%)
Query: 416 ALVGQSGSGKSTVISLIERFYDPQAGEVLIDGI---NLKEFQLQWIRK-KIGLVSQE--- 468
+++G SGSGKST++++I P GEV ID I +L + +L IR+ KIG V Q+
Sbjct: 35 SIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNL 94
Query: 469 -PVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526
P+L +++ + + A + E R L K+ + + QLSGG
Sbjct: 95 IPLLTALENVELPLIFKYRGAMSGEERRKRALECL-----KMAELEERFANHKPNQLSGG 149
Query: 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVN--RTTVIVAHRLSTV 584
Q+QR+AIARA+ +P I+L D+ T ALD+++ + + + L ++ +T V+V H ++
Sbjct: 150 QQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA 209
Query: 585 RNADMIAVIHRGKI 598
R + I + G++
Sbjct: 210 RFGERIIYLKDGEV 223
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 1058 VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ---- 1113
+ +++NL I+ G+ V+++G SGSGKST+++++ P G + +D ++ L
Sbjct: 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDEL 77
Query: 1114 LKWLRQQMGLVSQE 1127
K R ++G V Q+
Sbjct: 78 TKIRRDKIGFVFQQ 91
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 76.3 bits (186), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 116/224 (51%), Gaps = 42/224 (18%)
Query: 425 KSTVISLIERFYDPQAGEVLIDGINLK-------------EFQLQWIRKKIGLVSQEPVL 471
KST + I P G ++++G N+ + QL+ +R ++ +V Q L
Sbjct: 45 KSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNL 104
Query: 472 FTG-SIKDNIAYGKDDATTEEIRVATELAN--AAKFIDKLPQGIDTLV-GEHGTQLSGGQ 527
++ ++ +N+ +A + + ++ A A K++ K+ GID G++ LSGGQ
Sbjct: 105 WSHMTVLENVM----EAPIQVLGLSKHDARERALKYLAKV--GIDERAQGKYPVHLSGGQ 158
Query: 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVN-----RTTVIVAHRLS 582
+QR++IARA+ +P +LL DE TSALD E +V E L RIM +T V+V H +
Sbjct: 159 QQRVSIARALAMEPDVLLFDEPTSALDPE---LVGEVL-RIMQQLAEEGKTMVVVTHEMG 214
Query: 583 TVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAY--SQLIRLQE 623
R+ + + +H+GKI E+G DPE + Q RLQ+
Sbjct: 215 FARHVSSHVIFLHQGKIEEEG-------DPEQVFGNPQSPRLQQ 251
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 76.3 bits (186), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 106/208 (50%), Gaps = 16/208 (7%)
Query: 414 TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG--INLKEFQLQWIRKKIGLVSQEP-- 469
A++G +G GKST+ P +G +L D I+ + +R+ IG+V Q+P
Sbjct: 36 VTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDN 95
Query: 470 VLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529
LF+ S+ ++++G + E + + NA K GI+ L + LS GQK+
Sbjct: 96 QLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALK-----RTGIEHLKDKPTHCLSFGQKK 150
Query: 530 RIAIARAILKDPRILLLDEATSALD----AESEKVVQEALDRIMVNRTTVIVAHRLSTVR 585
R+AIA ++ +P++L+LDE T+ LD +E K++ E + + T +I H + V
Sbjct: 151 RVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGI--TIIIATHDIDIVP 208
Query: 586 -NADMIAVIHRGKIVEKGTHSKLVEDPE 612
D + V+ G+++ +G ++ + E
Sbjct: 209 LYCDNVFVMKEGRVILQGNPKEVFAEKE 236
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 105/208 (50%), Gaps = 15/208 (7%)
Query: 417 LVGQSGSGKSTVISLIERFYDPQAGEVLIDGINL-----KEFQLQWIRKKIGLVSQEPVL 471
L+G SG GK+T + +I +P G++ I G L K + + I +V Q L
Sbjct: 34 LLGPSGCGKTTTLRMIAGLEEPSRGQIYI-GDKLVADPEKGIFVPPKDRDIAMVFQSYAL 92
Query: 472 FTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530
+ ++ DNIA+ + + A+ + G+ L+ +LSGGQ+QR
Sbjct: 93 YPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELL-----GLTELLNRKPRELSGGQRQR 147
Query: 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI--MVNRTTVIVAH-RLSTVRNA 587
+A+ RAI++ P++ L+DE S LDA+ ++ L ++ + TT+ V H ++ +
Sbjct: 148 VALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMG 207
Query: 588 DMIAVIHRGKIVEKGTHSKLVEDPEGAY 615
D IAV++RG + + G+ ++ + P +
Sbjct: 208 DRIAVMNRGVLQQVGSPDEVYDKPANTF 235
Score = 33.9 bits (76), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 30/48 (62%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITL 1104
+V R+++L+++ G+ + L+G SG GK+T + ++ +P G I +
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYI 62
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 99/205 (48%), Gaps = 23/205 (11%)
Query: 417 LVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-S 475
VG SG GKST++ +I +G++ I + + + +G+V Q L+ S
Sbjct: 34 FVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMND--TPPAERGVGMVFQSYALYPHLS 91
Query: 476 IKDNIAYG------KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529
+ +N+++G K + + + E+ A +D+ P+ LSGGQ+Q
Sbjct: 92 VAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKA-----------LSGGQRQ 140
Query: 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAH-RLSTVRN 586
R+AI R ++ +P + LLDE S LDA ++ + R+ + RT + V H ++ +
Sbjct: 141 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTL 200
Query: 587 ADMIAVIHRGKIVEKGTHSKLVEDP 611
AD I V+ G++ + G +L P
Sbjct: 201 ADKIVVLDAGRVAQVGKPLELYHYP 225
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLL 1091
+V V +D+NL I G+ V VG SG GKST++ ++
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMI 49
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 99/205 (48%), Gaps = 23/205 (11%)
Query: 417 LVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-S 475
VG SG GKST++ +I +G++ I + + + +G+V Q L+ S
Sbjct: 34 FVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMND--TPPAERGVGMVFQSYALYPHLS 91
Query: 476 IKDNIAYG------KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529
+ +N+++G K + + + E+ A +D+ P+ LSGGQ+Q
Sbjct: 92 VAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKA-----------LSGGQRQ 140
Query: 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAH-RLSTVRN 586
R+AI R ++ +P + LLDE S LDA ++ + R+ + RT + V H ++ +
Sbjct: 141 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTL 200
Query: 587 ADMIAVIHRGKIVEKGTHSKLVEDP 611
AD I V+ G++ + G +L P
Sbjct: 201 ADKIVVLDAGRVAQVGKPLELYHYP 225
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLL 1091
+V V +D+NL I G+ V VG SG GKST++ ++
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMI 49
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 70.9 bits (172), Expect = 4e-12, Method: Composition-based stats.
Identities = 56/208 (26%), Positives = 101/208 (48%), Gaps = 15/208 (7%)
Query: 417 LVGQSGSGKSTVISLIERFYDPQAGEVLIDGINL-----KEFQLQWIRKKIGLVSQEPVL 471
L+G SG GK+T + I +P G++ I+ NL K + + + V Q L
Sbjct: 37 LLGPSGCGKTTTLRXIAGLEEPTRGQIYIED-NLVADPEKGVFVPPKERDVAXVFQSYAL 95
Query: 472 FT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530
+ ++ DNIA+ + + + A+ + G+ L+ +LSGGQ+QR
Sbjct: 96 YPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXL-----GLTELLNRKPRELSGGQRQR 150
Query: 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI--MVNRTTVIVAH-RLSTVRNA 587
+A+ RAI++ P++ L DE S LDA+ + L ++ + TT+ V H ++
Sbjct: 151 VALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTIYVTHDQVEAXTXG 210
Query: 588 DMIAVIHRGKIVEKGTHSKLVEDPEGAY 615
D IAV ++G++ + GT ++ P +
Sbjct: 211 DRIAVXNKGELQQVGTPDEVYYKPVNTF 238
Score = 38.1 bits (87), Expect = 0.031, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLD 1105
DV +DL+L+I+ G+ + L+G SG GK+T + + +P G I ++
Sbjct: 18 DVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIE 66
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 99/205 (48%), Gaps = 23/205 (11%)
Query: 417 LVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-S 475
VG SG GKST++ +I +G++ I + + + +G+V Q L+ S
Sbjct: 34 FVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMND--TPPAERGVGMVFQSYALYPHLS 91
Query: 476 IKDNIAYG------KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529
+ +N+++G K + + + E+ A +D+ P+ LSGGQ+Q
Sbjct: 92 VAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKA-----------LSGGQRQ 140
Query: 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAH-RLSTVRN 586
R+AI R ++ +P + LLD+ S LDA ++ + R+ + RT + V H ++ +
Sbjct: 141 RVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTL 200
Query: 587 ADMIAVIHRGKIVEKGTHSKLVEDP 611
AD I V+ G++ + G +L P
Sbjct: 201 ADKIVVLDAGRVAQVGKPLELYHYP 225
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLL 1091
+V V +D+NL I G+ V VG SG GKST++ ++
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMI 49
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 110/225 (48%), Gaps = 34/225 (15%)
Query: 417 LVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSI 476
L+G +G+GK+T + +I P +G V + G N+ E + +RK I + +E G+
Sbjct: 46 LIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLISYLPEE----AGAY 100
Query: 477 KDNIA----------YGKDDATTEE-IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSG 525
++ Y + EE + ATE+A G+ + + + S
Sbjct: 101 RNMQGIEYLRFVAGFYASSSSEIEEMVERATEIA-----------GLGEKIKDRVSTYSK 149
Query: 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIV-AHRLSTV 584
G +++ IARA++ +PR+ +LDE TS LD + + V++ L + T++V +H + V
Sbjct: 150 GMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEV 209
Query: 585 RN-ADMIAVIHRGKIVEKGTHSKLVE-----DPEGAYSQLIRLQE 623
D IA+IH G IVE GT +L E + E + ++++ E
Sbjct: 210 EFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVFEEVVKCSE 254
Score = 33.5 bits (75), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGV-------EIQK 1111
++ + ++ +I G+ L+G +G+GK+T + ++ P +G +T+ G E++K
Sbjct: 29 EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRK 88
Query: 1112 LQLKWLRQQMG 1122
L + +L ++ G
Sbjct: 89 L-ISYLPEEAG 98
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 63.5 bits (153), Expect = 6e-10, Method: Composition-based stats.
Identities = 59/203 (29%), Positives = 98/203 (48%), Gaps = 17/203 (8%)
Query: 416 ALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVL-FTG 474
A++G +G+GKST++ L+ + P GE + G NL +Q + + + ++ Q L F
Sbjct: 41 AIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPF 100
Query: 475 SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534
S+ + I G+ + R A + A L Q D V LSGG++QR+ +A
Sbjct: 101 SVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQR-DYRV------LSGGEQQRVQLA 153
Query: 535 RAILK------DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVI--VAHRLS-TVR 585
R + + PR L LDE TSALD ++ L ++ + V H L+
Sbjct: 154 RVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAAL 213
Query: 586 NADMIAVIHRGKIVEKGTHSKLV 608
AD I ++ +GK+V GT +++
Sbjct: 214 YADRIMLLAQGKLVACGTPEEVL 236
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 38/67 (56%)
Query: 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ 1119
+ D++L I +G+ VA++G +G+GKST++ LL + P G L G + Q K L +
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALAR 85
Query: 1120 QMGLVSQ 1126
++ Q
Sbjct: 86 TRAVMRQ 92
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 59.3 bits (142), Expect = 1e-08, Method: Composition-based stats.
Identities = 53/175 (30%), Positives = 84/175 (48%), Gaps = 23/175 (13%)
Query: 416 ALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQ---EPVLF 472
A++GQ+G GKST++ L+ + P G++ + + IG V Q P F
Sbjct: 35 AVLGQNGCGKSTLLDLLLGIHRPIQGKIEV-------------YQSIGFVPQFFSSP--F 79
Query: 473 TGSIKDNIAYGKDDATTEEIRVAT-ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531
S+ D + G+ + + + A + +D L + L T LSGGQ+Q I
Sbjct: 80 AYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYL--NLTHLAKREFTSLSGGQRQLI 137
Query: 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTV 584
IARAI + +++LLDE TSALD ++ +V L + N T V H+ + V
Sbjct: 138 LIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQV 192
Score = 35.8 bits (81), Expect = 0.13, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+F+ LN + G +A++G++G GKST++ LL + P G I
Sbjct: 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 93/200 (46%), Gaps = 30/200 (15%)
Query: 416 ALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINL---KEFQLQWIR-KKIGLVSQ---- 467
+++G SGSGKST++ ++ P G+V ++G + E +L +R +K+G V Q
Sbjct: 34 SIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYL 93
Query: 468 --EPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSG 525
E I + GK +E + +L G+ + +LSG
Sbjct: 94 IPELTALENVIVPMLKMGKPKKEAKE--------RGEYLLSEL--GLGDKLSRKPYELSG 143
Query: 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVI--------- 576
G++QR+AIARA+ +P +L DE T LD+ + K V + +I T+++
Sbjct: 144 GEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA 203
Query: 577 -VAHRLSTVRNADMIAVIHR 595
+ HR +++ ++ I R
Sbjct: 204 ELTHRTLEMKDGKVVGEITR 223
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI---QKLQLK 1115
++ + ++L ++ G+ V+++G SGSGKST++ +L P G + L+G E+ + +L
Sbjct: 18 EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELS 77
Query: 1116 WLR-QQMGLVSQ 1126
LR +++G V Q
Sbjct: 78 LLRNRKLGFVFQ 89
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 98/198 (49%), Gaps = 9/198 (4%)
Query: 417 LVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI-RKKIGLVSQEPVLFTG- 474
L+G +G+GK+T +S I Q G+++ +G ++ I R I LV + +F
Sbjct: 37 LIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRXGIALVPEGRRIFPEL 96
Query: 475 SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534
++ +N+ G + +E + +L +L + + L G LSGG++Q +AI
Sbjct: 97 TVYENLXXGAYNRKDKE-GIKRDLEWIFSLFPRLKERLKQL----GGTLSGGEQQXLAIG 151
Query: 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHR--LSTVRNADMIAV 592
RA+ P++L DE + L V E + +I TT+++ + L ++ A V
Sbjct: 152 RALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYV 211
Query: 593 IHRGKIVEKGTHSKLVED 610
+ G+IV +G S+L+++
Sbjct: 212 LETGQIVLEGKASELLDN 229
Score = 34.3 bits (77), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 1038 DVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP 1097
D+ E++ HV + + + ++LK+ G+ V L+G +G+GK+T +S +
Sbjct: 4 DIVLEVQSLHVYYG-----AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA 58
Query: 1098 DAGHITLDGVEI 1109
G I +G +I
Sbjct: 59 QKGKIIFNGQDI 70
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 93/194 (47%), Gaps = 7/194 (3%)
Query: 416 ALVGQSGSGKSTVISLI--ERFYDPQAGEVLIDGINLKEFQL-QWIRKKIGLVSQEPVLF 472
AL+G +G+GKST+ ++ + Y + GE+L+DG N+ E + RK + L Q PV
Sbjct: 33 ALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEV 92
Query: 473 TG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531
G +I + + E+ VA K ++ L L SGG+K+R
Sbjct: 93 PGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRN 152
Query: 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAH--RLSTVRNAD 588
I + ++ +P +LDE S LD ++ KVV ++ + N +++ H R+ D
Sbjct: 153 EILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPD 212
Query: 589 MIAVIHRGKIVEKG 602
+ V+ G++V G
Sbjct: 213 KVHVMMDGRVVATG 226
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLL--QRFYDPDAGHITLDGVEIQKL 1112
+ + +NL + G+ AL+G +G+GKST+ +L Y + G I LDG I +L
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILEL 72
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 85/192 (44%), Gaps = 26/192 (13%)
Query: 417 LVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSI 476
+VG +G GK+T + ++ +P G+V D ++ Q+I+ + E + S
Sbjct: 387 IVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLT--VAYKPQYIKAEYEGTVYELLSKIDSS 444
Query: 477 KDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536
K N + K TEL P GI L + LSGG+ QR+AIA
Sbjct: 445 KLNSNFYK-----------TELLK--------PLGIIDLYDRNVEDLSGGELQRVAIAAT 485
Query: 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMVN--RTTVIVAHRLSTVRNADMIAVIH 594
+L+D I LLDE ++ LD E V A+ +M +T ++V H + + ++
Sbjct: 486 LLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVF 545
Query: 595 RGKIVEKGTHSK 606
G E G H +
Sbjct: 546 EG---EPGRHGR 554
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 522 QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVN-RTTVIVAHR 580
QLSGG+ QR+AIA A+L+ DE +S LD V + R+ + ++V H
Sbjct: 228 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 287
Query: 581 LSTVRN-ADMIAVIH 594
L+ + +D+I V++
Sbjct: 288 LAVLDYLSDVIHVVY 302
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLD 1105
+IR G+ + +VG +G GK+T V +L +P G + D
Sbjct: 378 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD 416
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 85/193 (44%), Gaps = 26/193 (13%)
Query: 416 ALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGS 475
+VG +G GK+T + ++ +P G+V D ++ Q+I+ + E + S
Sbjct: 372 GIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLT--VAYKPQYIKAEYEGTVYELLSKIDS 429
Query: 476 IKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535
K N + K TEL P GI L + LSGG+ QR+AIA
Sbjct: 430 SKLNSNFYK-----------TELLK--------PLGIIDLYDRNVEDLSGGELQRVAIAA 470
Query: 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMVN--RTTVIVAHRLSTVRNADMIAVI 593
+L+D I LLDE ++ LD E V A+ +M +T ++V H + + ++
Sbjct: 471 TLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIV 530
Query: 594 HRGKIVEKGTHSK 606
G E G H +
Sbjct: 531 FEG---EPGRHGR 540
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 522 QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVN-RTTVIVAHR 580
QLSGG+ QR+AIA A+L+ DE +S LD V + R+ + ++V H
Sbjct: 214 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 273
Query: 581 LSTVRN-ADMIAVIH 594
L+ + +D+I V++
Sbjct: 274 LAVLDYLSDVIHVVY 288
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLD 1105
+IR G+ + +VG +G GK+T V +L +P G + D
Sbjct: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD 402
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 96/210 (45%), Gaps = 36/210 (17%)
Query: 417 LVGQSGSGKSTVISLIERFYDPQAGEVLIDGINL--------------KEFQLQWIRKKI 462
++G +GSGKST+I++I F G V + ++ + FQ K++
Sbjct: 38 IIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEM 97
Query: 463 GLVSQEPVLFTGSIK------DNIAYGKDDATTEEIRVATELANAAKFID--KLPQGIDT 514
++ L G I +++ Y K EE+ + A K ++ KL D
Sbjct: 98 TVLEN---LLIGEINPGESPLNSLFYKKWIPKEEEM-----VEKAFKILEFLKLSHLYDR 149
Query: 515 LVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL-DAESEKVVQEALDRIMVNRT 573
GE LSGGQ + + I RA++ +P+++++DE + + + + L+ T
Sbjct: 150 KAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGIT 205
Query: 574 TVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602
+I+ HRL V N D + V+ G+I+ +G
Sbjct: 206 FLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235
Score = 30.8 bits (68), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 27/46 (58%)
Query: 1064 LNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI 1109
+++ + G ++G +GSGKST+++++ F D G + + +I
Sbjct: 26 VSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDI 71
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 63/119 (52%), Gaps = 5/119 (4%)
Query: 507 KLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALD 566
K+P+ D L SGG+K+R I + + +P + +LDE+ S LD ++ KVV + ++
Sbjct: 132 KMPE--DLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVN 189
Query: 567 RIMV-NRTTVIVAH--RLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622
+ R+ +IV H R+ D + V+++G+IV+ G + + + E Y L Q
Sbjct: 190 SLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEEQGYGWLTEQQ 248
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
Query: 1047 HVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLL 1091
HVS + D + R L+L + G+ A++G +GSGKST+ + L
Sbjct: 8 HVSVE-----DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATL 47
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 63/119 (52%), Gaps = 5/119 (4%)
Query: 507 KLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALD 566
K+P+ D L SGG+K+R I + + +P + +LDE+ S LD ++ KVV + ++
Sbjct: 151 KMPE--DLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVN 208
Query: 567 RIMV-NRTTVIVAH--RLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622
+ R+ +IV H R+ D + V+++G+IV+ G + + + E Y L Q
Sbjct: 209 SLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEEQGYGWLTEQQ 267
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 1046 HHVSFK--YPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLL 1091
H +S K + S D + R L+L + G+ A++G +GSGKST+ + L
Sbjct: 19 HMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATL 66
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 96/210 (45%), Gaps = 36/210 (17%)
Query: 417 LVGQSGSGKSTVISLIERFYDPQAGEVLIDGINL--------------KEFQLQWIRKKI 462
++G +GSGKST+I++I F G V + ++ + FQ K++
Sbjct: 38 IIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEM 97
Query: 463 GLVSQEPVLFTGSI------KDNIAYGKDDATTEEIRVATELANAAKFID--KLPQGIDT 514
++ L G I +++ Y K EE+ + A K ++ KL D
Sbjct: 98 TVLEN---LLIGEICPGESPLNSLFYKKWIPKEEEM-----VEKAFKILEFLKLSHLYDR 149
Query: 515 LVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL-DAESEKVVQEALDRIMVNRT 573
GE LSGGQ + + I RA++ +P+++++DE + + + + L+ T
Sbjct: 150 KAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGIT 205
Query: 574 TVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602
+I+ HRL V N D + V+ G+I+ +G
Sbjct: 206 FLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 27/46 (58%)
Query: 1064 LNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI 1109
+++ + G ++G +GSGKST+++++ F D G + + +I
Sbjct: 26 VSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDI 71
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 96/210 (45%), Gaps = 36/210 (17%)
Query: 417 LVGQSGSGKSTVISLIERFYDPQAGEVLIDGINL--------------KEFQLQWIRKKI 462
++G +GSGKST+I++I F G V + ++ + FQ K++
Sbjct: 38 IIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEM 97
Query: 463 GLVSQEPVLFTGSIK------DNIAYGKDDATTEEIRVATELANAAKFID--KLPQGIDT 514
++ L G I +++ Y K EE+ + A K ++ KL D
Sbjct: 98 TVLEN---LLIGEINPGESPLNSLFYKKWIPKEEEM-----VEKAFKILEFLKLSHLYDR 149
Query: 515 LVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL-DAESEKVVQEALDRIMVNRT 573
GE LSGGQ + + I RA++ +P+++++D+ + + + + L+ T
Sbjct: 150 KAGE----LSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKAKGIT 205
Query: 574 TVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602
+I+ HRL V N D + V+ G+I+ +G
Sbjct: 206 FLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 27/46 (58%)
Query: 1064 LNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI 1109
+++ + G ++G +GSGKST+++++ F D G + + +I
Sbjct: 26 VSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDI 71
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 509 PQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI 568
P GI L +LSGG+ QR+AIA +L+D I LLDE ++ LD E V A+ +
Sbjct: 388 PLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHL 447
Query: 569 MVN--RTTVIVAH 579
+T ++V H
Sbjct: 448 XEKNEKTALVVEH 460
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 90/193 (46%), Gaps = 25/193 (12%)
Query: 416 ALVGQSGSGKSTVISLIERFYDPQAGEVLI---------DGINLKEF---QLQWIRKKIG 463
+VG +G+GKST + ++ AG+++ DG+ ++ F +LQ +K+
Sbjct: 51 GIVGPNGTGKSTAVKIL-------AGQLIPNLCGDNDSWDGV-IRAFRGNELQNYFEKLK 102
Query: 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQL 523
PV+ + D I E ++ A E + + L ++ ++ L
Sbjct: 103 NGEIRPVVKPQYV-DLIPKAVKGKVIELLKKADETGKLEEVVKALE--LENVLEREIQHL 159
Query: 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVN-RTTVIVAHRLS 582
SGG+ QR+AIA A+L++ DE +S LD A+ R+ ++ ++V H L+
Sbjct: 160 SGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA 219
Query: 583 TVRN-ADMIAVIH 594
+ +D+I V++
Sbjct: 220 VLDYLSDIIHVVY 232
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLD 1105
+I+ G+ + +VG +G GK+T V L +P G I D
Sbjct: 308 EIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWD 346
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 99/214 (46%), Gaps = 37/214 (17%)
Query: 417 LVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGL-----VSQEPVL 471
LVG +G+GKST+++ + + G + G L+ W K+ L Q+
Sbjct: 31 LVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEA----WSATKLALHRAYLSQQQTPP 85
Query: 472 FTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531
F + + + D T E+ ++A A DKL G QLSGG+ QR+
Sbjct: 86 FATPVWHYLTLHQHDKTRTEL--LNDVAGALALDDKL--------GRSTNQLSGGEWQRV 135
Query: 532 AIARAILK-----DP--RILLLDEATSALDAESEKVVQEALDRIMVNRTT-----VIVAH 579
+A +L+ +P ++LLLD+ ++LD Q ALD+I+ + V+ +H
Sbjct: 136 RLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQ----QSALDKILSALSQQGLAIVMSSH 191
Query: 580 RLS-TVRNADMIAVIHRGKIVEKGTHSKLVEDPE 612
L+ T+R+A ++ GK++ G +++ P
Sbjct: 192 DLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPN 225
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 98/214 (45%), Gaps = 37/214 (17%)
Query: 417 LVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGL-----VSQEPVL 471
LVG +G+GKST+++ + + G + G L+ W K+ L Q+
Sbjct: 31 LVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEA----WSATKLALHRAYLSQQQTPP 85
Query: 472 FTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531
F + + + D T E+ ++A A DKL G QLSGG+ QR+
Sbjct: 86 FATPVWHYLTLHQHDKTRTEL--LNDVAGALALDDKL--------GRSTNQLSGGEWQRV 135
Query: 532 AIARAILK-----DP--RILLLDEATSALDAESEKVVQEALDRIMVNRTT-----VIVAH 579
+A +L+ +P ++LLLD+ +LD Q ALD+I+ + V+ +H
Sbjct: 136 RLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQ----QSALDKILSALSQQGLAIVMSSH 191
Query: 580 RLS-TVRNADMIAVIHRGKIVEKGTHSKLVEDPE 612
L+ T+R+A ++ GK++ G +++ P
Sbjct: 192 DLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPN 225
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 12/116 (10%)
Query: 516 VGEHGTQLSGGQKQRIAIARAILKDP---RILLLDEATSALDAESEKVVQEALDRIMVNR 572
+G+ T LSGG+ QRI +A + K + +LDE T L E + + E L R +V+R
Sbjct: 799 LGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHR-LVDR 857
Query: 573 --TTVIVAHRLSTVRNADMIAVI------HRGKIVEKGTHSKLVEDPEGAYSQLIR 620
T +++ H L ++NAD I + G IV GT ++ ++P + ++
Sbjct: 858 GNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPHSYTGRFLK 913
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 9/105 (8%)
Query: 521 TQLSGGQKQRIAIARAILKDPR--ILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIV 577
T LSGG+ QRI +A I I +LDE T L + + + L ++ + T ++V
Sbjct: 463 TTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVV 522
Query: 578 AHRLSTVRNADMIAVI------HRGKIVEKGTHSKLVEDPEGAYS 616
H +RNAD I I + G++V +GT +L+++P+ + +
Sbjct: 523 EHDEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELLKNPDSSLT 567
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 24/152 (15%)
Query: 417 LVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE--FQLQWIRKKIGLVSQE------ 468
L G +G+GK+T+++++ + +G V + G + + + +R+ IG VS
Sbjct: 52 LYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYSAETVRQHIGFVSHSLLEKFQ 111
Query: 469 ------PVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522
V+ +G+ K Y D +EIR N A + KL G ++
Sbjct: 112 EGERVIDVVISGAFKSIGVYQDID---DEIR------NEAHQLLKLV-GXSAKAQQYIGY 161
Query: 523 LSGGQKQRIAIARAILKDPRILLLDEATSALD 554
LS G+KQR+ IARA+ P++L+LDE + LD
Sbjct: 162 LSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 47.0 bits (110), Expect = 7e-05, Method: Composition-based stats.
Identities = 41/164 (25%), Positives = 87/164 (53%), Gaps = 16/164 (9%)
Query: 419 GQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIK 477
G +G GK+T++ I + P GE++ +G+ + + ++ KI + +E ++ S++
Sbjct: 42 GPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKIFFLPEEIIVPRKISVE 96
Query: 478 DNIAYGKDDATTEEIRV-ATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536
D Y K A+ ++V E+ +A + ++ L + +GE LS G +R+ +A
Sbjct: 97 D---YLKAVASLYGVKVNKNEIMDALESVEVL--DLKKKLGE----LSQGTIRRVQLAST 147
Query: 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHR 580
+L + I +LD+ A+D +S+ V +++ I+ + VI++ R
Sbjct: 148 LLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSR 191
Score = 35.0 bits (79), Expect = 0.23, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 5/116 (4%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
++E+ +S Y D V + + I G V G +G GK+T++ + + P G
Sbjct: 10 KLEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGE 65
Query: 1102 ITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASE 1157
I +GV I K++ K ++ + D ++A +A G + EI A E
Sbjct: 66 IIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKA-VASLYGVKVNKNEIMDALE 120
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 78/165 (47%), Gaps = 23/165 (13%)
Query: 417 LVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSI 476
++G++G+GK+T+I L+ P G+ ++ + + +KI F G++
Sbjct: 383 MMGENGTGKTTLIKLLAGALKPDEGQ------DIPKLNVSMKPQKIA------PKFPGTV 430
Query: 477 KDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536
+ + + K + T++ P ID ++ + LSGG+ QR+AI A
Sbjct: 431 R-QLFFKKIRGQFLNPQFQTDVVK--------PLRIDDIIDQEVQHLSGGELQRVAIVLA 481
Query: 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMVN--RTTVIVAH 579
+ I L+DE ++ LD+E + + + R +++ +T IV H
Sbjct: 482 LGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEH 526
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 82/193 (42%), Gaps = 20/193 (10%)
Query: 417 LVGQSGSGKSTVISLIE--------RFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQE 468
LVG +G GKST + ++ RF DP + +I E Q + + L
Sbjct: 108 LVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKM---LEDDI 164
Query: 469 PVLFTGSIKDNIAYGKDDATTE-----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQL 523
+ DNI + ++R+ + ++I L ++ ++ +L
Sbjct: 165 KAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKIL--QLENVLKRDIEKL 222
Query: 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVI-VAHRLS 582
SGG+ QR AI + +++ + + DE +S LD + + + ++ VI V H LS
Sbjct: 223 SGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLS 282
Query: 583 TVRN-ADMIAVIH 594
+ +D + +I+
Sbjct: 283 VLDYLSDFVCIIY 295
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 13/79 (16%)
Query: 1049 SFKYPSRPDVQVFRDLNLKIRAGK-----TVALVGESGSGKSTVVSLLQRFYDPDAGHIT 1103
+F YPS Q D L + G+ + ++GE+G+GK+T++ LL PD G
Sbjct: 353 AFSYPSLKKTQ--GDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQ-- 408
Query: 1104 LDGVEIQKLQLKWLRQQMG 1122
+I KL + Q++
Sbjct: 409 ----DIPKLNVSMKPQKIA 423
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 58/216 (26%), Positives = 96/216 (44%), Gaps = 37/216 (17%)
Query: 417 LVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGL-----VSQEPVL 471
LVG +G+GKST+++ + G + G L+ W K+ L Q+
Sbjct: 31 LVGPNGAGKSTLLARXAGXTSGK-GSIQFAGQPLE----AWSATKLALHRAYLSQQQTPP 85
Query: 472 FTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531
F + + + D T E+ ++A A DKL G QLSGG+ QR+
Sbjct: 86 FATPVWHYLTLHQHDKTRTEL--LNDVAGALALDDKL--------GRSTNQLSGGEWQRV 135
Query: 532 AIARAILK-----DP--RILLLDEATSALDAESEKVVQEALDRIMV-----NRTTVIVAH 579
+A +L+ +P ++LLLDE ++LD Q ALD+I+ V +H
Sbjct: 136 RLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQ----QSALDKILSALCQQGLAIVXSSH 191
Query: 580 RLS-TVRNADMIAVIHRGKIVEKGTHSKLVEDPEGA 614
L+ T+R+A ++ GK + G +++ P A
Sbjct: 192 DLNHTLRHAHRAWLLKGGKXLASGRREEVLTPPNLA 227
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 58/216 (26%), Positives = 97/216 (44%), Gaps = 37/216 (17%)
Query: 417 LVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGL-----VSQEPVL 471
LVG +G+GKST+++ + G + G L+ W K+ L Q+
Sbjct: 31 LVGPNGAGKSTLLARXAGXTSGK-GSIQFAGQPLE----AWSATKLALHRAYLSQQQTPP 85
Query: 472 FTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531
F + + + D T E+ ++A A DKL G QLSGG+ QR+
Sbjct: 86 FATPVWHYLTLHQHDKTRTEL--LNDVAGALALDDKL--------GRSTNQLSGGEWQRV 135
Query: 532 AIARAILK-----DP--RILLLDEATSALDAESEKVVQEALDRIMVNRTT-----VIVAH 579
+A +L+ +P ++LLLDE ++LD Q ALD+I+ + V +H
Sbjct: 136 RLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQ----QSALDKILSALSQQGLAIVXSSH 191
Query: 580 RLS-TVRNADMIAVIHRGKIVEKGTHSKLVEDPEGA 614
L+ T+R+A ++ GK + G +++ P A
Sbjct: 192 DLNHTLRHAHRAWLLKGGKXLASGRREEVLTPPNLA 227
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Query: 498 LANAAKFIDKLPQGID--TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
L+ ++ F +++ + ++ L+ + LSGG+ Q++ IA + K+ + +LD+ +S LD
Sbjct: 359 LSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDV 418
Query: 556 ESEKVVQEALDRIMVNR--TTVIVAHRLS 582
E +V +A+ R+ R T I+ H LS
Sbjct: 419 EERYIVAKAIKRVTRERKAVTFIIDHDLS 447
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 89/202 (44%), Gaps = 36/202 (17%)
Query: 413 TTAALVGQSGSGKSTVISL-----IERFYDPQAGEVLIDGINLKEFQLQWIRK------- 460
T ++G++G GK+TV+ + I F DP + +V D + LK F+ + I
Sbjct: 26 TILGVLGKNGVGKTTVLKILAGEIIPNFGDPNS-KVGKDEV-LKRFRGKEIYNYFKELYS 83
Query: 461 -------KIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGID 513
KI V G++ + + + +E++ EL N +K
Sbjct: 84 NELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVK---ELLNMTNLWNK------ 134
Query: 514 TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRT 573
LSGG QR+ +A ++L++ + + D+ +S LD + +A+ ++ N+
Sbjct: 135 -----DANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKY 189
Query: 574 TVIVAHRLSTVRN-ADMIAVIH 594
++V H L + D+I +I+
Sbjct: 190 VIVVDHDLIVLDYLTDLIHIIY 211
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 30/42 (71%)
Query: 513 DTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD 554
D ++ + LSGG K ++A+ARA+L++ ILLLDE T+ LD
Sbjct: 539 DEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLD 580
Score = 36.6 bits (83), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 39/65 (60%), Gaps = 5/65 (7%)
Query: 1040 KGEIELHHVSFKYP--SRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP 1097
K +++ ++ F+YP S+P + D+N + +A++G +G+GKST++++L P
Sbjct: 669 KAIVKVTNMEFQYPGTSKPQIT---DINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLP 725
Query: 1098 DAGHI 1102
+G +
Sbjct: 726 TSGEV 730
Score = 36.6 bits (83), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 511 GIDTLVGEHGT--QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI 568
G+D + H LSGGQK ++ +A + P +++LDE T+ LD +S + +AL
Sbjct: 888 GLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF 947
Query: 569 MVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602
+I+ H +N + + + G++ G
Sbjct: 948 --EGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSG 980
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 57/104 (54%), Gaps = 10/104 (9%)
Query: 516 VGEHGTQLSGGQKQRIAIARAILKDPR---ILLLDEATSALD-AESEKVVQEALDRIMVN 571
+G+ T+LSGG+ QRI +A + + R + +LDE T+ L A+ E++ ++ + +
Sbjct: 724 LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAG 783
Query: 572 RTTVIVAHRLSTVRNADMIAVI------HRGKIVEKGTHSKLVE 609
T + V H++ V +D + I G++V +GT +++ +
Sbjct: 784 NTVIAVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEVAQ 827
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 26/32 (81%)
Query: 523 LSGGQKQRIAIARAILKDPRILLLDEATSALD 554
LSGG K ++A+ARA+L++ ILLLDE T+ LD
Sbjct: 549 LSGGWKXKLALARAVLRNADILLLDEPTNHLD 580
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 511 GIDTLVGEHGT--QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI 568
G+D + H LSGGQK ++ +A + P +++LDE T+ LD +S + +AL
Sbjct: 888 GLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF 947
Query: 569 MVNRTTVIVAHRLSTVRN 586
+I+ H +N
Sbjct: 948 --EGGVIIITHSAEFTKN 963
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 1040 KGEIELHHVSFKYP--SRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP 1097
K +++ + F+YP S+P + D+N + +A++G +G+GKST++++L P
Sbjct: 669 KAIVKVTNXEFQYPGTSKPQIT---DINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLP 725
Query: 1098 DAGHI 1102
+G +
Sbjct: 726 TSGEV 730
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 26/32 (81%)
Query: 523 LSGGQKQRIAIARAILKDPRILLLDEATSALD 554
LSGG K ++A+ARA+L++ ILLLDE T+ LD
Sbjct: 543 LSGGWKXKLALARAVLRNADILLLDEPTNHLD 574
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 511 GIDTLVGEHGT--QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEAL 565
G+D + H LSGGQK ++ +A + P +++LDE T+ LD +S + +AL
Sbjct: 882 GLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKAL 938
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 1040 KGEIELHHVSFKYP--SRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP 1097
K +++ + F+YP S+P + D+N + +A++G +G+GKST++++L P
Sbjct: 663 KAIVKVTNXEFQYPGTSKPQIT---DINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLP 719
Query: 1098 DAGHI 1102
+G +
Sbjct: 720 TSGEV 724
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 10/104 (9%)
Query: 516 VGEHGTQLSGGQKQRIAIARAILKDPR---ILLLDEATSALDAESEKVVQEALDRIMVNR 572
+G+ T LSGG+ QR+ +A + + + +LDE T+ L + + + L R++ N
Sbjct: 839 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNG 898
Query: 573 TTVIV-AHRLSTVRNADMIAVI------HRGKIVEKGTHSKLVE 609
TV+V H L ++ AD I + G+IV GT ++ E
Sbjct: 899 DTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAE 942
Score = 33.1 bits (74), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 12/120 (10%)
Query: 511 GID--TLVGEHGTQLSGGQKQRIAIARAILKDPR--ILLLDEATSALDA-ESEKVVQEAL 565
G+D TL GT LSGG+ QRI +A I + +LDE + L ++++++
Sbjct: 492 GLDYLTLSRSAGT-LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLK 550
Query: 566 DRIMVNRTTVIVAHRLSTVRNADMI------AVIHRGKIVEKGTHSKLVEDPEGAYSQLI 619
+ T ++V H T+ AD + A IH G++V GT +++ DP Q +
Sbjct: 551 SMRDLGNTLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNSLTGQYL 610
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 10/104 (9%)
Query: 516 VGEHGTQLSGGQKQRIAIARAILKDPR---ILLLDEATSALDAESEKVVQEALDRIMVNR 572
+G+ T LSGG+ QR+ +A + + + +LDE T+ L + + + L R++ N
Sbjct: 839 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNG 898
Query: 573 TTVIV-AHRLSTVRNADMIAVI------HRGKIVEKGTHSKLVE 609
TV+V H L ++ AD I + G+IV GT ++ E
Sbjct: 899 DTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAE 942
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 12/120 (10%)
Query: 511 GID--TLVGEHGTQLSGGQKQRIAIARAILKDPR--ILLLDEATSALDA-ESEKVVQEAL 565
G+D TL GT LSGG+ QRI +A I + +LDE + L ++++++
Sbjct: 492 GLDYLTLSRSAGT-LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLK 550
Query: 566 DRIMVNRTTVIVAHRLSTVRNADMI------AVIHRGKIVEKGTHSKLVEDPEGAYSQLI 619
+ T ++V H T AD + A IH G++V GT ++ DP Q +
Sbjct: 551 SXRDLGNTLIVVEHDEDTXLAADYLIDIGPGAGIHGGEVVAAGTPEEVXNDPNSLTGQYL 610
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 10/104 (9%)
Query: 516 VGEHGTQLSGGQKQRIAIARAILKDPR---ILLLDEATSALDAESEKVVQEALDRIMVNR 572
+G+ T LSGG+ QR+ +A + + + +LDE T+ L + + + L R++ N
Sbjct: 537 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNG 596
Query: 573 TTVIV-AHRLSTVRNADMIAVI------HRGKIVEKGTHSKLVE 609
TV+V H L ++ AD I + G+IV GT ++ E
Sbjct: 597 DTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAE 640
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 12/120 (10%)
Query: 511 GID--TLVGEHGTQLSGGQKQRIAIARAILKDPR--ILLLDEATSALDA-ESEKVVQEAL 565
G+D TL GT LSGG+ QRI +A I + +LDE + L ++++++
Sbjct: 190 GLDYLTLSRSAGT-LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLK 248
Query: 566 DRIMVNRTTVIVAHRLSTVRNADMI------AVIHRGKIVEKGTHSKLVEDPEGAYSQLI 619
+ T ++V H T+ AD + A IH G++V GT +++ DP Q +
Sbjct: 249 SMRDLGNTLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNSLTGQYL 308
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 12/105 (11%)
Query: 523 LSGGQKQRIAIARAILKD--PRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAH 579
LSGG+ QRI +A I + +LDE + L + + E L R+ + T ++V H
Sbjct: 522 LSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEH 581
Query: 580 RLSTVRNADMIAVI------HRGKIVEKGTHSKLVEDPE---GAY 615
T+ +AD I I H G+IV G + +L+ + + GAY
Sbjct: 582 DEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLRNKDSITGAY 626
Score = 33.1 bits (74), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 516 VGEHGTQLSGGQKQRIAIARAILKDP---RILLLDEATSALDAESEKVVQEALDRIMVNR 572
+G+ LSGG+ QR+ +A + K + +LDE T+ L + + + ++ ++
Sbjct: 857 LGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKG 916
Query: 573 TTVIV-AHRLSTVRNADMI 590
TVIV H L ++ +D I
Sbjct: 917 NTVIVIEHNLDVIKTSDWI 935
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 37.4 bits (85), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 40/201 (19%), Positives = 85/201 (42%), Gaps = 14/201 (6%)
Query: 384 IELRDVYFSYPARPNEQXXXXXXXXXXXXTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I+L++V + + E+ ++G +GSGK+T++ I P +G +
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVNGEKVIILGPNGSGKTTLLRAISGLL-PYSGNI 60
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAK 503
I+G+ +++ + +IR L + G ++I Y ++ + + E+ A K
Sbjct: 61 FINGMEVRKIR-NYIRYSTNLPEAYEI---GVTVNDIVYLYEELKGLDRDLFLEMLKALK 116
Query: 504 FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563
+++ + +LS GQ + + A+ P I+ LDE +DA V+
Sbjct: 117 LGEEILR-------RKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISR 169
Query: 564 ALDRIMVNRTTVIVAHRLSTV 584
+ + ++V H L +
Sbjct: 170 YIKE--YGKEGILVTHELDML 188
Score = 33.5 bits (75), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Query: 1061 FRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120
++NL++ G+ V ++G +GSGK+T++ + P +G+I ++G+E++K++ ++R
Sbjct: 21 LENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIR-NYIRYS 77
Query: 1121 MGL 1123
L
Sbjct: 78 TNL 80
>pdb|2OAP|1 Chain 1, Crystal Structure Of The Archaeal Secretion Atpase Gspe In
Complex With Amp-Pnp
pdb|2OAP|2 Chain 2, Crystal Structure Of The Archaeal Secretion Atpase Gspe In
Complex With Amp-Pnp
pdb|2OAQ|1 Chain 1, Crystal Structure Of The Archaeal Secretion Atpase Gspe In
Complex With Phosphate
pdb|2OAQ|2 Chain 2, Crystal Structure Of The Archaeal Secretion Atpase Gspe In
Complex With Phosphate
Length = 511
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 1064 LNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITL-DGVEIQKLQLKWL 1117
L L I + +VGE+ SGK+T ++ + F PDA +++ D EI+ W+
Sbjct: 253 LWLAIEHKFSAIVVGETASGKTTTLNAIXXFIPPDAKVVSIEDTREIKLYHENWI 307
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 414 TAALVGQSGSGKSTVISLIERFYDPQAGEVLI-DGINLKEFQLQWI 458
+A +VG++ SGK+T ++ I F P A V I D +K + WI
Sbjct: 262 SAIVVGETASGKTTTLNAIXXFIPPDAKVVSIEDTREIKLYHENWI 307
>pdb|3AUX|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|B Chain B, Crystal Structure Of Rad50 Bound To Adp
pdb|3AV0|B Chain B, Crystal Structure Of Mre11-Rad50 Bound To Atp S
Length = 371
Score = 30.4 bits (67), Expect = 6.2, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Query: 512 IDTLVGEHGTQLSGGQKQRIAIARAILKDP-RILLLDEATSALDAESEKVVQEALDRIMV 570
ID L G G Q++ R+AIA A++ + ++LDE T LD + E ++
Sbjct: 278 IDNLSG--GEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS 335
Query: 571 NRTTVIVAHRLSTVRNADMIAVIHRGKIVEK 601
+I+ H AD+I + + V K
Sbjct: 336 IPQMIIITHHRELEDVADVIINVKKDGNVSK 366
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,037,804
Number of Sequences: 62578
Number of extensions: 1108874
Number of successful extensions: 3559
Number of sequences better than 100.0: 108
Number of HSP's better than 100.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 3118
Number of HSP's gapped (non-prelim): 279
length of query: 1178
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1068
effective length of database: 8,089,757
effective search space: 8639860476
effective search space used: 8639860476
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)