Query 001041
Match_columns 1178
No_of_seqs 497 out of 4671
Neff 8.6
Searched_HMMs 46136
Date Thu Mar 28 14:10:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001041.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001041hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0055 Multidrug/pheromone ex 100.0 1E-177 3E-182 1608.1 116.7 1109 43-1177 12-1121(1228)
2 PTZ00265 multidrug resistance 100.0 5E-144 1E-148 1420.0 137.5 1120 42-1177 43-1353(1466)
3 KOG0054 Multidrug resistance-a 100.0 2E-144 4E-149 1352.6 110.8 995 127-1177 262-1270(1381)
4 PLN03130 ABC transporter C fam 100.0 5E-131 1E-135 1308.3 130.1 984 129-1177 367-1369(1622)
5 PLN03232 ABC transporter C fam 100.0 2E-129 4E-134 1296.3 127.6 984 128-1177 366-1366(1495)
6 TIGR00957 MRP_assoc_pro multi 100.0 2E-125 4E-130 1260.2 130.9 1020 127-1177 382-1416(1522)
7 PTZ00243 ABC transporter; Prov 100.0 6E-120 1E-124 1201.8 129.4 1060 64-1177 249-1440(1560)
8 TIGR01271 CFTR_protein cystic 100.0 4E-117 9E-122 1175.4 129.2 1011 130-1177 149-1348(1490)
9 KOG0058 Peptide exporter, ABC 100.0 2E-100 4E-105 884.4 68.7 576 44-626 133-708 (716)
10 KOG0055 Multidrug/pheromone ex 100.0 7.2E-96 2E-100 892.4 71.9 579 42-623 648-1226(1228)
11 COG2274 SunT ABC-type bacterio 100.0 2.2E-85 4.9E-90 795.9 72.5 550 61-622 159-708 (709)
12 KOG0054 Multidrug resistance-a 100.0 1.1E-84 2.4E-89 815.0 61.8 571 39-620 796-1373(1381)
13 PRK11174 cysteine/glutathione 100.0 1.8E-80 3.9E-85 769.4 75.9 567 46-623 10-585 (588)
14 TIGR00958 3a01208 Conjugate Tr 100.0 3.8E-80 8.1E-85 776.1 74.7 565 43-618 146-710 (711)
15 PTZ00265 multidrug resistance 100.0 6.2E-80 1.3E-84 812.5 76.1 570 46-622 813-1465(1466)
16 COG1132 MdlB ABC-type multidru 100.0 5.7E-79 1.2E-83 751.3 75.8 551 60-623 15-565 (567)
17 KOG0058 Peptide exporter, ABC 100.0 2E-80 4.4E-85 717.8 52.8 466 706-1177 134-599 (716)
18 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 4.7E-78 1E-82 758.8 77.3 563 44-621 121-684 (686)
19 TIGR00957 MRP_assoc_pro multi 100.0 2.8E-78 6E-83 807.0 74.6 569 42-621 948-1519(1522)
20 TIGR01193 bacteriocin_ABC ABC- 100.0 2.5E-77 5.5E-82 754.8 75.5 565 44-620 142-707 (708)
21 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 2.4E-77 5.2E-82 756.1 75.2 563 46-619 142-709 (710)
22 COG4988 CydD ABC-type transpor 100.0 9.7E-77 2.1E-81 676.1 70.8 549 67-624 8-557 (559)
23 PLN03130 ABC transporter C fam 100.0 2.3E-77 5E-82 795.6 75.5 571 41-623 896-1475(1622)
24 PRK11160 cysteine/glutathione 100.0 1.9E-76 4.2E-81 726.7 75.4 566 46-620 4-572 (574)
25 TIGR03375 type_I_sec_LssB type 100.0 1.3E-76 2.8E-81 746.7 74.7 555 46-610 135-689 (694)
26 PRK11176 lipid transporter ATP 100.0 3.6E-76 7.7E-81 730.8 76.5 563 49-622 16-579 (582)
27 PRK10790 putative multidrug tr 100.0 2.2E-75 4.8E-80 723.8 77.4 564 48-625 13-578 (592)
28 PTZ00243 ABC transporter; Prov 100.0 6.3E-76 1.4E-80 781.3 75.7 511 109-622 1004-1546(1560)
29 PLN03232 ABC transporter C fam 100.0 3.5E-76 7.7E-81 785.7 72.9 570 41-622 893-1471(1495)
30 TIGR02203 MsbA_lipidA lipid A 100.0 7E-75 1.5E-79 718.7 76.2 562 49-621 5-567 (571)
31 TIGR01846 type_I_sec_HlyB type 100.0 1E-74 2.2E-79 728.7 76.8 567 45-622 126-692 (694)
32 KOG0057 Mitochondrial Fe/S clu 100.0 7.2E-75 1.6E-79 647.6 61.6 551 65-623 36-587 (591)
33 PRK13657 cyclic beta-1,2-gluca 100.0 1.3E-73 2.8E-78 706.8 77.8 564 46-622 7-570 (588)
34 TIGR02868 CydC thiol reductant 100.0 2E-74 4.3E-79 706.4 69.7 524 49-581 4-529 (529)
35 KOG0056 Heavy metal exporter H 100.0 2E-77 4.3E-82 649.4 38.1 505 116-625 272-777 (790)
36 TIGR02204 MsbA_rel ABC transpo 100.0 1.4E-73 3E-78 707.4 76.2 567 48-621 8-574 (576)
37 PRK10789 putative multidrug tr 100.0 1.1E-73 2.3E-78 702.5 73.0 540 76-624 12-552 (569)
38 COG4987 CydC ABC-type transpor 100.0 1.1E-73 2.3E-78 638.1 64.8 505 109-620 64-571 (573)
39 TIGR01192 chvA glucan exporter 100.0 1E-72 2.2E-77 694.5 77.1 564 46-622 7-570 (585)
40 TIGR01271 CFTR_protein cystic 100.0 1.2E-73 2.6E-78 759.8 73.4 500 114-624 936-1454(1490)
41 TIGR02857 CydD thiol reductant 100.0 4.1E-72 8.8E-77 685.9 71.1 524 62-593 6-529 (529)
42 TIGR01842 type_I_sec_PrtD type 100.0 2.5E-70 5.5E-75 670.5 73.8 530 64-609 11-542 (544)
43 COG5265 ATM1 ABC-type transpor 100.0 4.3E-70 9.4E-75 589.1 42.0 489 127-620 6-496 (497)
44 TIGR01194 cyc_pep_trnsptr cycl 100.0 3E-66 6.5E-71 634.0 67.6 535 45-601 4-551 (555)
45 COG2274 SunT ABC-type bacterio 100.0 6E-66 1.3E-70 626.3 56.9 464 706-1177 141-604 (709)
46 COG4618 ArpD ABC-type protease 100.0 1E-64 2.3E-69 559.8 53.8 519 77-610 41-561 (580)
47 PRK10522 multidrug transporter 100.0 8.5E-62 1.8E-66 595.0 67.1 464 117-601 62-530 (547)
48 TIGR02868 CydC thiol reductant 100.0 1.4E-62 3E-67 601.8 57.5 458 710-1177 4-465 (529)
49 TIGR00958 3a01208 Conjugate Tr 100.0 2.3E-61 4.9E-66 606.2 58.5 465 706-1177 148-612 (711)
50 COG1132 MdlB ABC-type multidru 100.0 7.1E-61 1.5E-65 590.6 57.7 448 717-1177 13-460 (567)
51 PRK11174 cysteine/glutathione 100.0 1.2E-60 2.7E-65 592.1 57.8 462 707-1177 10-480 (588)
52 TIGR01193 bacteriocin_ABC ABC- 100.0 5E-60 1.1E-64 597.5 57.7 463 707-1177 144-606 (708)
53 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1.9E-59 4.1E-64 590.1 59.0 453 714-1177 131-583 (686)
54 PRK11160 cysteine/glutathione 100.0 3.5E-59 7.7E-64 573.9 57.9 461 709-1177 6-470 (574)
55 TIGR00954 3a01203 Peroxysomal 100.0 1.5E-58 3.3E-63 572.6 62.5 530 46-595 79-653 (659)
56 TIGR03375 type_I_sec_LssB type 100.0 5.1E-59 1.1E-63 587.0 58.1 462 707-1177 135-596 (694)
57 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 6E-59 1.3E-63 588.4 57.7 465 706-1177 141-610 (710)
58 KOG0056 Heavy metal exporter H 100.0 4.8E-61 1E-65 521.9 28.0 446 721-1177 217-669 (790)
59 TIGR02857 CydD thiol reductant 100.0 6E-58 1.3E-62 560.9 58.4 452 718-1177 2-453 (529)
60 TIGR01846 type_I_sec_HlyB type 100.0 1.4E-57 3E-62 573.3 58.7 462 707-1177 127-588 (694)
61 PRK11176 lipid transporter ATP 100.0 3.3E-57 7.1E-62 561.3 58.3 462 708-1177 14-475 (582)
62 TIGR02203 MsbA_lipidA lipid A 100.0 9.9E-57 2.1E-61 556.6 58.0 460 710-1177 5-464 (571)
63 PRK10790 putative multidrug tr 100.0 9E-57 1.9E-61 557.5 57.4 459 708-1177 12-471 (592)
64 TIGR02204 MsbA_rel ABC transpo 100.0 2.2E-55 4.8E-60 544.7 58.6 465 708-1177 7-471 (576)
65 TIGR01192 chvA glucan exporter 100.0 2.2E-55 4.7E-60 540.9 57.9 460 707-1177 7-466 (585)
66 COG4988 CydD ABC-type transpor 100.0 4.4E-55 9.6E-60 498.9 54.9 446 724-1177 5-451 (559)
67 PRK10789 putative multidrug tr 100.0 2.2E-55 4.7E-60 540.4 55.7 438 732-1177 8-446 (569)
68 KOG0057 Mitochondrial Fe/S clu 100.0 1.2E-55 2.5E-60 493.6 45.5 444 725-1177 36-482 (591)
69 PRK13657 cyclic beta-1,2-gluca 100.0 1.1E-54 2.3E-59 538.0 58.0 460 707-1177 7-466 (588)
70 COG4987 CydC ABC-type transpor 100.0 8.3E-54 1.8E-58 478.7 51.3 452 717-1177 14-469 (573)
71 TIGR01194 cyc_pep_trnsptr cycl 100.0 1.5E-53 3.2E-58 522.1 52.9 453 707-1176 5-469 (555)
72 TIGR01842 type_I_sec_PrtD type 100.0 6E-53 1.3E-57 517.1 57.7 446 716-1177 3-449 (544)
73 COG5265 ATM1 ABC-type transpor 100.0 1.7E-53 3.7E-58 460.5 31.8 391 782-1177 3-394 (497)
74 COG1123 ATPase components of v 100.0 7.4E-51 1.6E-55 467.3 36.5 228 383-616 5-251 (539)
75 PRK13549 xylose transporter AT 100.0 9.6E-51 2.1E-55 492.7 34.0 212 383-604 5-227 (506)
76 PRK09700 D-allose transporter 100.0 3.4E-50 7.5E-55 488.8 34.9 214 383-606 5-231 (510)
77 PRK10261 glutathione transport 100.0 2.9E-50 6.2E-55 497.2 34.6 221 383-610 12-259 (623)
78 PRK15134 microcin C ABC transp 100.0 1.4E-49 3E-54 485.2 37.5 218 383-607 5-244 (529)
79 TIGR01257 rim_protein retinal- 100.0 4.8E-47 1E-51 496.8 58.0 220 382-610 927-1150(2272)
80 PRK10762 D-ribose transporter 100.0 2.7E-49 5.9E-54 479.4 33.4 212 383-604 4-225 (501)
81 TIGR02633 xylG D-xylose ABC tr 100.0 3.9E-49 8.4E-54 478.9 34.3 209 384-602 2-223 (500)
82 TIGR03269 met_CoM_red_A2 methy 100.0 3.1E-49 6.8E-54 481.6 30.7 211 384-604 1-253 (520)
83 PRK10938 putative molybdenum t 100.0 1.9E-48 4.2E-53 471.6 35.2 210 383-608 3-223 (490)
84 COG4618 ArpD ABC-type protease 100.0 1.1E-46 2.3E-51 417.2 44.9 434 729-1177 33-467 (580)
85 PRK11288 araG L-arabinose tran 100.0 1.8E-48 3.8E-53 472.3 33.6 209 383-601 4-221 (501)
86 PRK15439 autoinducer 2 ABC tra 100.0 4.6E-48 9.9E-53 468.8 35.6 213 383-607 11-227 (510)
87 cd03289 ABCC_CFTR2 The CFTR su 100.0 1.1E-48 2.3E-53 432.0 27.3 236 382-621 1-236 (275)
88 TIGR00956 3a01205 Pleiotropic 100.0 4.4E-47 9.4E-52 501.4 47.0 206 399-608 74-299 (1394)
89 PRK10982 galactose/methyl gala 100.0 2.2E-48 4.8E-53 470.8 31.5 209 386-604 1-218 (491)
90 PRK10522 multidrug transporter 100.0 3.5E-46 7.6E-51 457.2 50.8 433 713-1171 7-443 (547)
91 COG1126 GlnQ ABC-type polar am 100.0 9E-49 2E-53 391.2 22.7 217 383-613 2-229 (240)
92 PRK15064 ABC transporter ATP-b 100.0 3.1E-47 6.6E-52 464.7 38.2 208 384-609 2-242 (530)
93 PRK11819 putative ABC transpor 100.0 2.8E-46 6E-51 457.5 40.5 209 383-609 6-250 (556)
94 TIGR00954 3a01203 Peroxysomal 100.0 2.4E-45 5.2E-50 455.0 49.2 453 707-1176 79-577 (659)
95 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 9.2E-46 2E-50 453.0 41.3 209 383-609 4-248 (552)
96 COG4172 ABC-type uncharacteriz 100.0 3.4E-46 7.3E-51 400.4 30.6 229 383-619 6-257 (534)
97 COG1117 PstB ABC-type phosphat 100.0 4E-47 8.8E-52 376.8 19.5 220 382-611 6-239 (253)
98 PRK14257 phosphate ABC transpo 100.0 1.8E-46 4E-51 425.1 26.6 227 378-612 75-316 (329)
99 COG1125 OpuBA ABC-type proline 100.0 7E-47 1.5E-51 384.3 20.1 222 384-616 2-232 (309)
100 COG1135 AbcC ABC-type metal io 100.0 9.8E-47 2.1E-51 396.0 21.6 223 384-613 2-235 (339)
101 PLN03140 ABC transporter G fam 100.0 1.3E-44 2.8E-49 475.1 46.3 207 399-608 178-426 (1470)
102 PRK10636 putative ABC transpor 100.0 6.6E-44 1.4E-48 440.6 35.3 207 384-608 2-235 (638)
103 cd03252 ABCC_Hemolysin The ABC 100.0 5.1E-44 1.1E-48 391.5 27.6 234 384-619 1-234 (237)
104 PRK11147 ABC transporter ATPas 100.0 4.8E-43 1E-47 434.5 36.5 207 383-609 3-243 (635)
105 cd03288 ABCC_SUR2 The SUR doma 100.0 1.7E-43 3.7E-48 391.0 28.4 239 380-620 16-254 (257)
106 COG1120 FepC ABC-type cobalami 100.0 8.6E-44 1.9E-48 377.1 20.5 214 383-610 2-229 (258)
107 COG3839 MalK ABC-type sugar tr 100.0 1.6E-43 3.5E-48 389.6 22.8 217 383-615 3-229 (338)
108 cd03254 ABCC_Glucan_exporter_l 100.0 6.5E-43 1.4E-47 380.9 27.3 227 382-610 1-227 (229)
109 COG1127 Ttg2A ABC-type transpo 100.0 2.5E-43 5.4E-48 357.9 22.1 222 382-617 7-243 (263)
110 cd03251 ABCC_MsbA MsbA is an e 100.0 7.8E-43 1.7E-47 381.5 26.7 226 384-610 1-226 (234)
111 cd03253 ABCC_ATM1_transporter 100.0 1E-42 2.2E-47 381.2 27.2 231 384-617 1-231 (236)
112 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 1E-42 2.2E-47 381.5 26.9 227 384-610 1-227 (238)
113 COG0488 Uup ATPase components 100.0 7E-42 1.5E-46 403.3 35.3 208 383-609 3-240 (530)
114 COG1116 TauB ABC-type nitrate/ 100.0 3.2E-43 7E-48 364.2 20.5 195 383-596 3-207 (248)
115 COG4615 PvdE ABC-type sideroph 100.0 1.4E-39 3.1E-44 347.9 47.7 467 112-601 57-529 (546)
116 cd03244 ABCC_MRP_domain2 Domai 100.0 2E-42 4.4E-47 374.8 26.5 220 382-603 1-220 (221)
117 PLN03073 ABC transporter F fam 100.0 3.8E-42 8.3E-47 424.8 32.3 219 382-607 176-429 (718)
118 COG1124 DppF ABC-type dipeptid 100.0 8.9E-43 1.9E-47 356.4 20.8 227 383-619 3-241 (252)
119 TIGR02314 ABC_MetN D-methionin 100.0 1.7E-42 3.7E-47 392.8 25.0 225 384-615 2-236 (343)
120 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 1.8E-42 3.8E-47 364.7 23.1 210 383-610 4-228 (254)
121 COG3842 PotA ABC-type spermidi 100.0 4.9E-43 1.1E-47 387.9 19.3 219 382-616 4-233 (352)
122 COG1122 CbiO ABC-type cobalt t 100.0 1.4E-42 2.9E-47 369.5 21.8 215 383-610 3-229 (235)
123 COG3840 ThiQ ABC-type thiamine 100.0 1.9E-42 4.1E-47 333.9 20.6 209 384-610 2-220 (231)
124 cd03245 ABCC_bacteriocin_expor 100.0 7.3E-42 1.6E-46 370.2 26.6 219 383-602 2-220 (220)
125 COG1136 SalX ABC-type antimicr 100.0 4.9E-42 1.1E-46 356.5 22.6 205 384-599 2-221 (226)
126 PRK13631 cbiO cobalt transport 100.0 8E-42 1.7E-46 386.2 25.9 222 382-610 20-266 (320)
127 COG2884 FtsE Predicted ATPase 100.0 1.9E-42 4.2E-47 337.3 17.4 206 384-602 2-219 (223)
128 COG3638 ABC-type phosphate/pho 100.0 7E-42 1.5E-46 346.4 21.1 216 383-608 3-236 (258)
129 cd03248 ABCC_TAP TAP, the Tran 100.0 1.2E-41 2.7E-46 369.8 24.3 220 379-598 7-226 (226)
130 PRK13409 putative ATPase RIL; 100.0 1.2E-41 2.6E-46 413.6 26.8 193 387-596 77-287 (590)
131 COG1118 CysA ABC-type sulfate/ 100.0 4.4E-42 9.6E-47 359.7 18.7 217 383-615 2-233 (345)
132 COG3845 ABC-type uncharacteriz 100.0 1.1E-39 2.3E-44 363.6 35.1 208 383-600 4-220 (501)
133 cd03260 ABC_PstB_phosphate_tra 100.0 2.7E-41 5.8E-46 367.5 21.8 210 384-607 1-227 (227)
134 COG4178 ABC-type uncharacteriz 100.0 1.8E-37 3.8E-42 361.4 54.9 467 108-594 91-587 (604)
135 PRK14269 phosphate ABC transpo 100.0 6.5E-41 1.4E-45 368.5 24.5 218 383-610 2-231 (246)
136 TIGR01186 proV glycine betaine 100.0 3.4E-41 7.3E-46 384.0 22.8 207 399-616 6-226 (363)
137 cd03261 ABC_Org_Solvent_Resist 100.0 1E-40 2.2E-45 364.7 25.7 217 384-610 1-227 (235)
138 PRK13650 cbiO cobalt transport 100.0 8.1E-41 1.8E-45 373.4 25.0 217 383-610 4-230 (279)
139 PRK11650 ugpC glycerol-3-phosp 100.0 8.4E-41 1.8E-45 382.6 25.5 218 383-615 3-230 (356)
140 PRK11432 fbpC ferric transport 100.0 7.5E-41 1.6E-45 381.7 24.9 217 383-615 6-232 (351)
141 COG1129 MglA ABC-type sugar tr 100.0 4.9E-40 1.1E-44 375.8 31.1 209 383-601 8-226 (500)
142 cd03369 ABCC_NFT1 Domain 2 of 100.0 1.8E-40 3.9E-45 355.4 25.5 204 381-604 4-207 (207)
143 PRK13637 cbiO cobalt transport 100.0 1.6E-40 3.5E-45 372.2 25.1 220 384-610 3-235 (287)
144 PRK11153 metN DL-methionine tr 100.0 1.5E-40 3.2E-45 380.5 25.1 225 384-615 2-236 (343)
145 PRK14250 phosphate ABC transpo 100.0 2.7E-40 5.7E-45 362.2 26.0 221 383-617 3-229 (241)
146 TIGR03265 PhnT2 putative 2-ami 100.0 1.1E-40 2.4E-45 381.1 23.8 221 383-615 4-230 (353)
147 PRK13643 cbiO cobalt transport 100.0 2E-40 4.2E-45 371.7 24.6 220 384-610 2-234 (288)
148 cd03219 ABC_Mj1267_LivG_branch 100.0 1.6E-40 3.4E-45 363.9 23.0 222 384-610 1-233 (236)
149 PRK14273 phosphate ABC transpo 100.0 3.9E-40 8.4E-45 364.4 25.8 223 383-615 7-244 (254)
150 PRK14242 phosphate transporter 100.0 2.8E-40 6E-45 365.5 24.1 219 383-611 6-239 (253)
151 PRK10744 pstB phosphate transp 100.0 4.9E-40 1.1E-44 364.3 25.8 221 381-611 11-246 (260)
152 PRK13646 cbiO cobalt transport 100.0 3E-40 6.4E-45 370.2 24.2 221 383-610 2-236 (286)
153 TIGR00972 3a0107s01c2 phosphat 100.0 4.3E-40 9.2E-45 362.4 24.7 218 384-611 2-234 (247)
154 PRK14235 phosphate transporter 100.0 4.7E-40 1E-44 365.5 24.4 220 381-610 17-252 (267)
155 cd03296 ABC_CysA_sulfate_impor 100.0 5.4E-40 1.2E-44 359.8 24.5 216 383-610 2-227 (239)
156 PRK13634 cbiO cobalt transport 100.0 4.2E-40 9.1E-45 369.4 24.0 220 384-610 3-236 (290)
157 PRK09452 potA putrescine/sperm 100.0 4.9E-40 1.1E-44 377.2 25.0 217 383-615 14-240 (375)
158 cd03224 ABC_TM1139_LivF_branch 100.0 4.1E-40 9E-45 357.2 23.1 217 384-609 1-221 (222)
159 PRK10851 sulfate/thiosulfate t 100.0 5.8E-40 1.3E-44 375.2 25.5 221 383-615 2-232 (353)
160 PRK13647 cbiO cobalt transport 100.0 4.9E-40 1.1E-44 366.1 24.1 212 383-607 4-225 (274)
161 TIGR03258 PhnT 2-aminoethylpho 100.0 3.8E-40 8.3E-45 376.9 23.8 223 381-615 3-234 (362)
162 PRK13635 cbiO cobalt transport 100.0 5.3E-40 1.2E-44 366.5 24.3 216 383-610 5-230 (279)
163 cd03291 ABCC_CFTR1 The CFTR su 100.0 2.7E-39 5.8E-44 358.6 29.5 213 379-610 35-248 (282)
164 cd03250 ABCC_MRP_domain1 Domai 100.0 6.2E-40 1.3E-44 350.3 23.4 200 384-597 1-204 (204)
165 cd03295 ABC_OpuCA_Osmoprotecti 100.0 6.5E-40 1.4E-44 359.8 24.1 218 384-610 1-226 (242)
166 cd03256 ABC_PhnC_transporter A 100.0 6.2E-40 1.3E-44 360.5 23.7 215 384-608 1-233 (241)
167 PRK13651 cobalt transporter AT 100.0 6.7E-40 1.5E-44 368.5 24.3 220 384-610 3-255 (305)
168 COG0410 LivF ABC-type branched 100.0 9E-40 2E-44 332.2 22.7 220 383-610 3-227 (237)
169 cd03258 ABC_MetN_methionine_tr 100.0 7E-40 1.5E-44 357.8 23.4 220 384-610 2-231 (233)
170 TIGR00960 3a0501s02 Type II (G 100.0 3.2E-40 6.9E-45 356.1 20.2 203 384-598 2-216 (216)
171 cd03294 ABC_Pro_Gly_Bertaine T 100.0 4.7E-40 1E-44 365.5 21.8 218 385-616 26-257 (269)
172 cd03263 ABC_subfamily_A The AB 100.0 5.2E-40 1.1E-44 355.7 21.6 215 384-607 1-219 (220)
173 TIGR02315 ABC_phnC phosphonate 100.0 9.7E-40 2.1E-44 359.3 23.7 220 384-607 2-233 (243)
174 PRK13636 cbiO cobalt transport 100.0 9.8E-40 2.1E-44 365.5 24.0 219 383-610 5-232 (283)
175 PRK09536 btuD corrinoid ABC tr 100.0 1E-39 2.3E-44 376.2 24.9 214 383-610 3-229 (402)
176 PRK14267 phosphate ABC transpo 100.0 8.8E-40 1.9E-44 361.5 23.3 219 383-611 4-239 (253)
177 PRK14259 phosphate ABC transpo 100.0 1.7E-39 3.6E-44 361.1 25.7 220 382-611 12-255 (269)
178 PRK15079 oligopeptide ABC tran 100.0 1.6E-39 3.4E-44 368.9 25.9 229 383-618 8-260 (331)
179 PRK11000 maltose/maltodextrin 100.0 9.8E-40 2.1E-44 376.6 24.3 221 383-615 3-229 (369)
180 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1E-39 2.2E-44 356.8 23.0 216 384-610 2-222 (236)
181 PRK14274 phosphate ABC transpo 100.0 1.7E-39 3.7E-44 360.1 25.0 220 383-612 12-246 (259)
182 PRK14247 phosphate ABC transpo 100.0 1.6E-39 3.5E-44 358.7 24.5 220 383-612 3-237 (250)
183 cd03218 ABC_YhbG The ABC trans 100.0 1.2E-39 2.6E-44 355.9 22.9 216 384-609 1-222 (232)
184 PRK13642 cbiO cobalt transport 100.0 1.6E-39 3.6E-44 362.8 24.4 217 383-610 4-230 (277)
185 PRK14251 phosphate ABC transpo 100.0 1.4E-39 3E-44 359.5 23.1 223 383-615 4-241 (251)
186 PRK13632 cbiO cobalt transport 100.0 1.8E-39 3.9E-44 361.6 24.3 220 383-610 7-232 (271)
187 PRK11629 lolD lipoprotein tran 100.0 1.7E-39 3.7E-44 354.3 23.6 214 383-603 5-228 (233)
188 PRK14236 phosphate transporter 100.0 2.4E-39 5.2E-44 360.8 25.1 220 381-610 23-257 (272)
189 cd03259 ABC_Carb_Solutes_like 100.0 9.4E-40 2E-44 351.6 21.0 207 384-602 1-213 (213)
190 PRK14237 phosphate transporter 100.0 2.5E-39 5.4E-44 359.7 24.9 219 382-610 19-252 (267)
191 cd03266 ABC_NatA_sodium_export 100.0 1.3E-39 2.8E-44 352.1 22.0 211 384-602 2-218 (218)
192 PRK14240 phosphate transporter 100.0 3.1E-39 6.7E-44 356.5 25.4 220 382-611 2-236 (250)
193 PRK11607 potG putrescine trans 100.0 2.1E-39 4.6E-44 372.9 24.8 223 382-616 18-246 (377)
194 PRK13537 nodulation ABC transp 100.0 1.4E-39 3E-44 366.9 22.9 217 383-610 7-228 (306)
195 cd03247 ABCC_cytochrome_bd The 100.0 1.4E-39 3E-44 339.4 21.1 178 384-602 1-178 (178)
196 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 8.1E-40 1.8E-44 353.7 20.1 208 384-598 1-218 (218)
197 PRK14249 phosphate ABC transpo 100.0 3.8E-39 8.3E-44 355.8 25.6 219 383-611 4-237 (251)
198 PRK14245 phosphate ABC transpo 100.0 1.6E-39 3.6E-44 358.4 22.6 219 383-611 3-236 (250)
199 PRK11831 putative ABC transpor 100.0 2.2E-39 4.7E-44 360.5 23.7 219 383-611 7-235 (269)
200 PRK14268 phosphate ABC transpo 100.0 2.6E-39 5.6E-44 358.2 24.1 221 383-613 12-246 (258)
201 PRK13644 cbiO cobalt transport 100.0 2.9E-39 6.2E-44 359.9 24.6 218 384-610 2-225 (274)
202 PRK11614 livF leucine/isoleuci 100.0 3.1E-39 6.7E-44 353.5 24.2 218 383-609 5-226 (237)
203 PRK14248 phosphate ABC transpo 100.0 5E-39 1.1E-43 358.0 26.2 219 383-611 21-254 (268)
204 PRK13645 cbiO cobalt transport 100.0 2.7E-39 5.9E-44 363.7 24.2 223 381-610 4-241 (289)
205 PRK14239 phosphate transporter 100.0 3.1E-39 6.7E-44 357.2 24.2 219 383-611 5-238 (252)
206 cd03226 ABC_cobalt_CbiO_domain 100.0 1E-39 2.2E-44 349.0 19.6 198 386-599 2-205 (205)
207 PRK13648 cbiO cobalt transport 100.0 3.7E-39 8E-44 358.9 24.9 220 383-610 7-232 (269)
208 cd03264 ABC_drug_resistance_li 100.0 1.8E-39 3.9E-44 348.9 21.6 203 384-602 1-211 (211)
209 PRK13633 cobalt transporter AT 100.0 3E-39 6.4E-44 361.3 23.8 217 383-610 4-234 (280)
210 TIGR02211 LolD_lipo_ex lipopro 100.0 2.3E-39 5E-44 350.9 22.2 209 384-599 2-220 (221)
211 PRK09493 glnQ glutamine ABC tr 100.0 6E-39 1.3E-43 351.9 25.7 217 384-610 2-226 (240)
212 PRK14256 phosphate ABC transpo 100.0 4.4E-39 9.5E-44 355.5 24.7 222 382-613 3-240 (252)
213 PRK14243 phosphate transporter 100.0 5.5E-39 1.2E-43 356.2 25.6 220 383-612 10-251 (264)
214 PRK13640 cbiO cobalt transport 100.0 4E-39 8.8E-44 360.3 24.7 217 382-610 4-233 (282)
215 TIGR03410 urea_trans_UrtE urea 100.0 2.9E-39 6.4E-44 352.2 22.9 214 384-607 1-219 (230)
216 PRK10070 glycine betaine trans 100.0 3.5E-39 7.5E-44 371.6 24.5 209 400-615 42-260 (400)
217 PRK13641 cbiO cobalt transport 100.0 3.8E-39 8.2E-44 361.4 24.1 221 383-610 2-235 (287)
218 TIGR03005 ectoine_ehuA ectoine 100.0 4.1E-39 8.9E-44 355.7 24.0 219 384-612 1-239 (252)
219 TIGR02769 nickel_nikE nickel i 100.0 3.9E-39 8.5E-44 357.9 24.0 220 384-610 3-241 (265)
220 PRK11264 putative amino-acid A 100.0 3.8E-39 8.3E-44 355.9 23.7 219 383-611 3-235 (250)
221 PRK14244 phosphate ABC transpo 100.0 2.1E-39 4.5E-44 357.9 21.5 220 384-613 6-241 (251)
222 PRK14261 phosphate ABC transpo 100.0 5.3E-39 1.1E-43 355.1 24.6 219 383-611 6-239 (253)
223 PRK10575 iron-hydroxamate tran 100.0 3.5E-39 7.6E-44 358.3 23.2 213 383-609 11-237 (265)
224 PRK10619 histidine/lysine/argi 100.0 4.4E-39 9.6E-44 356.3 23.9 219 382-610 4-242 (257)
225 PRK14262 phosphate ABC transpo 100.0 4.2E-39 9.2E-44 355.4 23.6 219 383-611 3-236 (250)
226 cd03268 ABC_BcrA_bacitracin_re 100.0 2.9E-39 6.3E-44 346.5 21.6 203 384-602 1-208 (208)
227 PRK13649 cbiO cobalt transport 100.0 4.2E-39 9.1E-44 361.0 23.8 220 384-610 3-235 (280)
228 PRK14238 phosphate transporter 100.0 6.1E-39 1.3E-43 357.0 24.9 222 383-612 24-258 (271)
229 PRK14270 phosphate ABC transpo 100.0 5.6E-39 1.2E-43 354.4 24.4 219 383-611 4-237 (251)
230 cd03265 ABC_DrrA DrrA is the A 100.0 3.1E-39 6.7E-44 349.3 21.8 209 384-607 1-219 (220)
231 TIGR03415 ABC_choXWV_ATP choli 100.0 3.6E-39 7.9E-44 368.6 23.5 212 399-617 37-262 (382)
232 PRK13652 cbiO cobalt transport 100.0 6E-39 1.3E-43 358.3 24.5 215 383-610 3-228 (277)
233 PRK11308 dppF dipeptide transp 100.0 6.7E-39 1.5E-43 363.5 25.2 230 383-619 5-254 (327)
234 TIGR03411 urea_trans_UrtD urea 100.0 5.7E-39 1.2E-43 352.8 23.8 221 384-609 3-231 (242)
235 cd03290 ABCC_SUR1_N The SUR do 100.0 7.1E-39 1.5E-43 345.9 23.9 210 385-597 2-218 (218)
236 PRK11022 dppD dipeptide transp 100.0 4.9E-39 1.1E-43 364.9 23.7 229 383-619 3-253 (326)
237 PRK09473 oppD oligopeptide tra 100.0 4.9E-39 1.1E-43 365.1 23.6 232 383-619 12-261 (330)
238 PRK10895 lipopolysaccharide AB 100.0 6.7E-39 1.4E-43 351.8 23.9 217 383-609 3-226 (241)
239 COG4175 ProV ABC-type proline/ 100.0 1.5E-39 3.3E-44 340.2 17.7 224 383-617 4-262 (386)
240 PRK14253 phosphate ABC transpo 100.0 9.1E-39 2E-43 352.5 25.0 218 383-610 3-234 (249)
241 PRK14271 phosphate ABC transpo 100.0 8.9E-39 1.9E-43 356.0 24.8 221 383-611 21-253 (276)
242 PRK11247 ssuB aliphatic sulfon 100.0 8.6E-39 1.9E-43 351.2 23.8 204 383-605 12-219 (257)
243 cd03246 ABCC_Protease_Secretio 100.0 6E-39 1.3E-43 332.7 21.2 172 384-598 1-173 (173)
244 cd03301 ABC_MalK_N The N-termi 100.0 4.9E-39 1.1E-43 346.2 21.3 207 384-602 1-213 (213)
245 cd03293 ABC_NrtD_SsuB_transpor 100.0 4.1E-39 8.8E-44 348.3 20.7 209 384-604 1-218 (220)
246 TIGR01288 nodI ATP-binding ABC 100.0 5.6E-39 1.2E-43 363.0 22.7 217 383-610 4-225 (303)
247 PRK14266 phosphate ABC transpo 100.0 1.2E-38 2.7E-43 351.7 25.0 222 383-614 3-239 (250)
248 PRK14260 phosphate ABC transpo 100.0 8.1E-39 1.8E-43 354.4 23.5 220 382-611 6-245 (259)
249 PRK11231 fecE iron-dicitrate t 100.0 8.5E-39 1.8E-43 353.6 23.6 212 384-609 3-227 (255)
250 PRK14254 phosphate ABC transpo 100.0 1.5E-38 3.3E-43 355.6 25.5 219 382-610 38-270 (285)
251 PRK11124 artP arginine transpo 100.0 1.7E-38 3.7E-43 348.8 25.5 217 383-609 2-230 (242)
252 PRK14252 phosphate ABC transpo 100.0 1.3E-38 2.9E-43 354.0 24.9 221 381-611 14-251 (265)
253 cd03257 ABC_NikE_OppD_transpor 100.0 6.9E-39 1.5E-43 349.2 22.1 212 384-602 2-228 (228)
254 PRK13638 cbiO cobalt transport 100.0 1.1E-38 2.3E-43 355.7 23.9 217 384-610 2-226 (271)
255 cd03225 ABC_cobalt_CbiO_domain 100.0 5E-39 1.1E-43 345.7 20.5 205 385-597 1-211 (211)
256 PRK10247 putative ABC transpor 100.0 9.6E-39 2.1E-43 346.1 22.8 213 383-605 7-223 (225)
257 PRK13536 nodulation factor exp 100.0 7.7E-39 1.7E-43 364.1 23.1 217 383-610 41-262 (340)
258 PRK11300 livG leucine/isoleuci 100.0 1.4E-38 3E-43 352.5 24.5 223 383-610 5-244 (255)
259 PRK13639 cbiO cobalt transport 100.0 1.1E-38 2.4E-43 355.8 23.6 218 384-610 2-227 (275)
260 TIGR02673 FtsE cell division A 100.0 5.9E-39 1.3E-43 345.9 20.7 201 384-597 2-214 (214)
261 PRK13548 hmuV hemin importer A 100.0 1.8E-38 3.9E-43 350.9 24.9 213 383-609 2-230 (258)
262 PRK14272 phosphate ABC transpo 100.0 1.5E-38 3.3E-43 351.6 24.3 225 383-615 4-242 (252)
263 TIGR03522 GldA_ABC_ATP gliding 100.0 1.1E-38 2.3E-43 360.0 22.5 216 384-610 3-222 (301)
264 PRK14265 phosphate ABC transpo 100.0 3.8E-38 8.3E-43 350.9 26.7 220 383-612 20-261 (274)
265 PRK10253 iron-enterobactin tra 100.0 2.3E-38 4.9E-43 351.8 24.8 214 382-609 6-233 (265)
266 PRK14275 phosphate ABC transpo 100.0 2.3E-38 5E-43 354.6 24.6 221 382-612 38-273 (286)
267 cd03235 ABC_Metallic_Cations A 100.0 6.3E-39 1.4E-43 345.2 19.3 197 386-602 2-213 (213)
268 PRK14263 phosphate ABC transpo 100.0 2.4E-38 5.2E-43 349.9 24.3 219 383-611 8-247 (261)
269 PRK11701 phnK phosphonate C-P 100.0 2.7E-38 6E-43 350.2 24.7 224 383-616 6-248 (258)
270 PRK14264 phosphate ABC transpo 100.0 2.9E-38 6.3E-43 356.8 25.2 219 382-610 44-290 (305)
271 TIGR03873 F420-0_ABC_ATP propo 100.0 1.8E-38 4E-43 351.2 23.2 221 384-609 2-226 (256)
272 cd03292 ABC_FtsE_transporter F 100.0 1.2E-38 2.5E-43 343.7 20.9 206 384-598 1-214 (214)
273 PRK14241 phosphate transporter 100.0 2.6E-38 5.6E-43 350.4 24.1 218 383-610 4-243 (258)
274 cd03298 ABC_ThiQ_thiamine_tran 100.0 2.5E-38 5.4E-43 340.1 23.0 201 384-602 1-211 (211)
275 PRK13547 hmuV hemin importer A 100.0 2.6E-38 5.7E-43 350.4 23.7 221 384-609 2-244 (272)
276 cd03300 ABC_PotA_N PotA is an 100.0 2.5E-38 5.4E-43 344.7 23.1 215 384-610 1-221 (232)
277 PRK14258 phosphate ABC transpo 100.0 2.7E-38 5.9E-43 350.3 23.7 221 382-612 6-248 (261)
278 PRK15093 antimicrobial peptide 100.0 2.6E-38 5.6E-43 360.5 24.0 229 383-618 3-257 (330)
279 PRK14246 phosphate ABC transpo 100.0 2.3E-38 5E-43 349.2 22.8 224 383-616 10-248 (257)
280 TIGR00968 3a0106s01 sulfate AB 100.0 3.3E-38 7.2E-43 344.7 23.8 215 384-610 1-221 (237)
281 PRK14255 phosphate ABC transpo 100.0 2.8E-38 6.1E-43 349.3 23.4 220 383-612 5-239 (252)
282 COG4619 ABC-type uncharacteriz 100.0 5.1E-39 1.1E-43 305.6 14.8 192 398-599 15-213 (223)
283 PRK10771 thiQ thiamine transpo 100.0 4.8E-38 1E-42 342.7 24.6 209 384-610 2-220 (232)
284 PRK10584 putative ABC transpor 100.0 3.4E-38 7.5E-43 343.3 23.3 208 383-601 6-227 (228)
285 cd03269 ABC_putative_ATPase Th 100.0 1.3E-38 2.8E-43 342.0 19.7 205 384-602 1-210 (210)
286 PRK11144 modC molybdate transp 100.0 3E-38 6.4E-43 362.9 23.7 212 384-612 2-221 (352)
287 PRK10908 cell division protein 100.0 3.3E-38 7.1E-43 341.8 22.7 207 384-599 2-216 (222)
288 cd03262 ABC_HisP_GlnQ_permease 100.0 2.3E-38 4.9E-43 341.2 20.5 205 384-598 1-213 (213)
289 cd03234 ABCG_White The White s 100.0 3.1E-38 6.7E-43 342.7 21.2 214 384-602 4-226 (226)
290 TIGR01978 sufC FeS assembly AT 100.0 4.3E-38 9.3E-43 346.4 22.4 215 384-608 1-233 (243)
291 PRK15112 antimicrobial peptide 100.0 7.6E-38 1.7E-42 347.7 24.6 219 383-611 4-241 (267)
292 PRK09984 phosphonate/organopho 100.0 9E-38 2E-42 346.9 24.9 220 383-607 4-240 (262)
293 COG0444 DppD ABC-type dipeptid 100.0 5.5E-38 1.2E-42 336.7 21.4 228 384-619 2-253 (316)
294 TIGR01277 thiQ thiamine ABC tr 100.0 9.7E-38 2.1E-42 335.6 23.3 202 384-603 1-212 (213)
295 cd03299 ABC_ModC_like Archeal 100.0 1.1E-37 2.3E-42 340.2 23.8 214 384-610 1-220 (235)
296 TIGR01188 drrA daunorubicin re 100.0 4E-38 8.6E-43 355.9 21.0 204 399-610 6-214 (302)
297 COG4555 NatA ABC-type Na+ tran 100.0 2.4E-38 5.2E-43 311.1 15.7 219 384-610 2-223 (245)
298 PRK10419 nikE nickel transport 100.0 1.7E-37 3.6E-42 344.9 24.3 226 383-616 3-247 (268)
299 COG1123 ATPase components of v 100.0 1.1E-37 2.4E-42 358.7 23.4 233 382-620 279-530 (539)
300 COG1131 CcmA ABC-type multidru 100.0 7.8E-38 1.7E-42 348.8 21.4 214 383-610 4-227 (293)
301 TIGR02142 modC_ABC molybdenum 100.0 1.4E-37 3E-42 358.0 23.9 215 388-614 4-226 (354)
302 PRK11248 tauB taurine transpor 100.0 1.3E-37 2.9E-42 342.7 22.6 207 384-605 2-216 (255)
303 cd03228 ABCC_MRP_Like The MRP 100.0 1.5E-37 3.2E-42 321.6 21.1 171 384-597 1-171 (171)
304 COG1137 YhbG ABC-type (unclass 100.0 1.4E-38 3E-43 312.4 12.6 224 382-611 3-230 (243)
305 cd03233 ABC_PDR_domain1 The pl 100.0 1.5E-37 3.2E-42 330.4 21.5 191 383-602 3-202 (202)
306 TIGR02323 CP_lyasePhnK phospho 100.0 2.5E-37 5.3E-42 342.0 24.0 224 383-616 3-245 (253)
307 TIGR02982 heterocyst_DevA ABC 100.0 1.3E-37 2.8E-42 336.4 21.0 208 384-598 2-219 (220)
308 cd03230 ABC_DR_subfamily_A Thi 100.0 1.5E-37 3.2E-42 322.2 20.3 170 384-598 1-173 (173)
309 PRK10418 nikD nickel transport 100.0 3.2E-37 6.9E-42 340.6 24.0 216 383-612 4-233 (254)
310 cd03223 ABCD_peroxisomal_ALDP 100.0 3.1E-37 6.6E-42 316.9 20.6 163 384-596 1-163 (166)
311 cd03229 ABC_Class3 This class 100.0 2.6E-37 5.6E-42 322.0 20.2 172 384-597 1-178 (178)
312 cd03297 ABC_ModC_molybdenum_tr 100.0 5.1E-37 1.1E-41 330.5 22.3 202 388-602 5-214 (214)
313 cd03213 ABCG_EPDR ABCG transpo 100.0 3.9E-37 8.4E-42 325.0 20.8 183 383-602 3-194 (194)
314 TIGR03740 galliderm_ABC gallid 100.0 4.8E-37 1E-41 332.9 21.6 205 384-606 1-210 (223)
315 COG0411 LivG ABC-type branched 100.0 2.8E-37 6.1E-42 316.5 17.7 220 384-611 5-241 (250)
316 cd03215 ABC_Carb_Monos_II This 100.0 4.7E-37 1E-41 321.3 19.8 172 383-598 4-182 (182)
317 cd03232 ABC_PDR_domain2 The pl 100.0 5.3E-37 1.2E-41 323.6 20.0 182 383-602 3-192 (192)
318 COG4172 ABC-type uncharacteriz 100.0 1.6E-36 3.5E-41 326.1 22.7 227 381-618 274-525 (534)
319 cd03217 ABC_FeS_Assembly ABC-t 100.0 1.5E-36 3.2E-41 322.4 21.9 185 384-608 1-192 (200)
320 PRK15056 manganese/iron transp 100.0 1.2E-36 2.7E-41 339.0 22.3 210 383-609 6-230 (272)
321 TIGR03608 L_ocin_972_ABC putat 100.0 5.7E-37 1.2E-41 328.5 18.7 198 386-593 1-206 (206)
322 CHL00131 ycf16 sulfate ABC tra 100.0 2.5E-36 5.3E-41 334.0 23.6 218 383-607 7-239 (252)
323 PRK09580 sufC cysteine desulfu 100.0 2.3E-36 4.9E-41 333.6 22.5 219 384-607 2-233 (248)
324 COG4598 HisP ABC-type histidin 100.0 6.4E-37 1.4E-41 294.1 15.6 216 383-613 6-245 (256)
325 TIGR02770 nickel_nikD nickel i 100.0 2.2E-36 4.7E-41 329.0 21.5 207 401-616 1-222 (230)
326 PRK03695 vitamin B12-transport 100.0 3.4E-36 7.4E-41 330.7 23.0 210 385-609 2-222 (248)
327 PRK10261 glutathione transport 100.0 3E-36 6.5E-41 372.6 25.1 228 383-617 313-561 (623)
328 PRK09544 znuC high-affinity zi 100.0 4.6E-36 1E-40 329.1 23.8 208 383-619 4-217 (251)
329 cd03214 ABC_Iron-Siderophores_ 100.0 1.7E-36 3.7E-41 316.5 19.1 177 385-602 1-180 (180)
330 COG4559 ABC-type hemin transpo 100.0 2.7E-36 5.8E-41 299.0 19.3 213 384-610 2-231 (259)
331 cd03231 ABC_CcmA_heme_exporter 100.0 5.4E-36 1.2E-40 318.6 22.1 195 384-593 1-198 (201)
332 COG4181 Predicted ABC-type tra 100.0 2.1E-36 4.5E-41 288.8 16.4 210 383-600 6-226 (228)
333 cd03216 ABC_Carb_Monos_I This 100.0 6.5E-36 1.4E-40 306.1 20.8 159 384-600 1-162 (163)
334 TIGR01184 ntrCD nitrate transp 100.0 5.8E-36 1.3E-40 325.2 21.7 194 402-607 1-202 (230)
335 cd03267 ABC_NatA_like Similar 100.0 3.8E-36 8.2E-41 328.0 19.6 196 399-602 34-236 (236)
336 COG4525 TauB ABC-type taurine 100.0 4.3E-36 9.3E-41 292.9 17.5 210 384-604 4-219 (259)
337 COG4608 AppF ABC-type oligopep 100.0 7.4E-36 1.6E-40 313.7 18.5 198 383-620 4-210 (268)
338 PRK13540 cytochrome c biogenes 100.0 1.3E-35 2.7E-40 315.7 20.5 193 384-591 2-197 (200)
339 PRK13538 cytochrome c biogenes 100.0 1.5E-35 3.2E-40 316.2 20.9 195 384-593 2-202 (204)
340 COG4604 CeuD ABC-type enteroch 100.0 1.9E-36 4.2E-41 296.1 12.7 213 384-610 2-226 (252)
341 KOG0060 Long-chain acyl-CoA tr 100.0 9.4E-33 2E-37 310.5 42.2 416 165-595 186-641 (659)
342 PRK15134 microcin C ABC transp 100.0 2.5E-35 5.3E-40 360.0 22.4 222 383-612 275-518 (529)
343 PRK13543 cytochrome c biogenes 100.0 8.7E-35 1.9E-39 312.6 22.2 196 383-595 11-212 (214)
344 TIGR01189 ccmA heme ABC export 100.0 5.1E-35 1.1E-39 310.7 19.8 193 384-592 1-197 (198)
345 TIGR00955 3a01204 The Eye Pigm 100.0 1.8E-35 4E-40 365.2 19.0 203 398-608 37-255 (617)
346 PRK13546 teichoic acids export 100.0 9.2E-35 2E-39 320.3 22.1 208 383-610 4-233 (264)
347 COG4161 ArtP ABC-type arginine 100.0 4.6E-35 1E-39 276.1 16.3 219 383-616 2-237 (242)
348 PRK13539 cytochrome c biogenes 100.0 1E-34 2.2E-39 310.4 21.1 195 383-595 2-200 (207)
349 PRK13545 tagH teichoic acids e 100.0 1.8E-34 4E-39 333.6 23.8 208 383-610 21-233 (549)
350 PLN03211 ABC transporter G-25; 100.0 1E-34 2.2E-39 357.4 22.3 202 399-609 81-296 (659)
351 TIGR02324 CP_lyasePhnL phospho 100.0 1.2E-34 2.7E-39 314.5 20.2 203 384-593 2-222 (224)
352 PRK13549 xylose transporter AT 100.0 1.1E-34 2.4E-39 352.3 21.6 218 383-607 259-492 (506)
353 TIGR03269 met_CoM_red_A2 methy 100.0 1.4E-34 3E-39 353.0 22.3 220 383-609 279-517 (520)
354 COG4148 ModC ABC-type molybdat 100.0 7.1E-35 1.5E-39 300.0 16.3 197 404-611 16-220 (352)
355 TIGR01166 cbiO cobalt transpor 100.0 1E-34 2.2E-39 306.4 17.8 178 399-583 5-189 (190)
356 TIGR03771 anch_rpt_ABC anchore 100.0 1.7E-34 3.7E-39 312.1 19.8 187 407-610 1-202 (223)
357 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 1.6E-34 3.5E-39 312.4 18.9 197 384-602 23-224 (224)
358 PRK13541 cytochrome c biogenes 100.0 2.4E-34 5.1E-39 304.6 19.3 189 384-591 2-193 (195)
359 PRK10535 macrolide transporter 100.0 3.4E-34 7.5E-39 355.4 23.6 219 383-608 4-231 (648)
360 TIGR01257 rim_protein retinal- 100.0 1.2E-32 2.5E-37 362.2 36.5 220 382-610 1936-2160(2272)
361 TIGR02633 xylG D-xylose ABC tr 100.0 6.6E-34 1.4E-38 345.7 21.7 216 383-605 257-488 (500)
362 COG4615 PvdE ABC-type sideroph 100.0 6.8E-31 1.5E-35 281.6 41.2 375 767-1158 54-430 (546)
363 TIGR01187 potA spermidine/putr 100.0 8.1E-34 1.8E-38 322.9 20.1 190 417-615 1-196 (325)
364 PRK09700 D-allose transporter 100.0 1.2E-33 2.7E-38 343.8 23.0 210 383-604 265-493 (510)
365 PRK10762 D-ribose transporter 100.0 1.2E-33 2.7E-38 342.7 21.3 210 383-607 257-482 (501)
366 cd03237 ABC_RNaseL_inhibitor_d 100.0 2.4E-33 5.1E-38 306.1 20.0 193 391-608 1-206 (246)
367 PRK11288 araG L-arabinose tran 100.0 1.9E-33 4.1E-38 341.1 20.4 212 383-608 257-484 (501)
368 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 3.8E-33 8.3E-38 278.9 17.9 143 384-597 1-144 (144)
369 TIGR00956 3a01205 Pleiotropic 100.0 2E-33 4.3E-38 371.9 20.8 213 383-606 759-990 (1394)
370 COG1101 PhnK ABC-type uncharac 100.0 2.6E-33 5.6E-38 278.5 16.2 202 398-601 18-230 (263)
371 PRK15064 ABC transporter ATP-b 100.0 7.9E-33 1.7E-37 338.0 23.2 202 383-610 319-526 (530)
372 cd03236 ABC_RNaseL_inhibitor_d 100.0 4.1E-33 8.9E-38 305.2 17.6 201 387-602 4-220 (255)
373 PRK15439 autoinducer 2 ABC tra 100.0 7.9E-33 1.7E-37 335.7 21.2 211 383-608 268-491 (510)
374 PRK15177 Vi polysaccharide exp 100.0 1.6E-32 3.5E-37 293.8 19.1 185 401-608 2-191 (213)
375 COG4167 SapF ABC-type antimicr 100.0 1.2E-32 2.5E-37 265.4 15.4 219 384-613 5-243 (267)
376 PRK10982 galactose/methyl gala 100.0 5.4E-32 1.2E-36 327.8 21.7 211 383-605 250-476 (491)
377 PRK10938 putative molybdenum t 100.0 3E-32 6.5E-37 330.3 19.3 208 383-601 260-484 (490)
378 PLN03073 ABC transporter F fam 100.0 1.2E-31 2.6E-36 331.7 22.6 200 382-607 507-712 (718)
379 cd03222 ABC_RNaseL_inhibitor T 100.0 5.7E-32 1.2E-36 277.5 16.3 151 387-605 4-159 (177)
380 COG4136 ABC-type uncharacteriz 100.0 6.9E-32 1.5E-36 251.9 15.2 195 383-593 2-207 (213)
381 COG4152 ABC-type uncharacteriz 100.0 3.4E-32 7.3E-37 275.4 13.5 214 383-610 2-220 (300)
382 PRK10636 putative ABC transpor 100.0 1.5E-31 3.2E-36 330.9 22.2 199 383-608 312-516 (638)
383 cd00267 ABC_ATPase ABC (ATP-bi 100.0 2.2E-31 4.7E-36 271.9 19.0 154 386-597 2-157 (157)
384 PRK11819 putative ABC transpor 100.0 2E-31 4.3E-36 326.5 22.4 202 382-610 323-534 (556)
385 COG1119 ModF ABC-type molybden 100.0 3.2E-31 6.9E-36 271.8 19.7 211 382-603 30-256 (257)
386 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2.6E-31 5.7E-36 325.6 22.6 199 383-608 322-530 (552)
387 KOG0927 Predicted transporter 100.0 2.3E-30 5E-35 289.4 27.6 215 382-609 74-309 (614)
388 cd03238 ABC_UvrA The excision 100.0 3.6E-31 7.9E-36 271.3 18.4 154 399-597 8-165 (176)
389 PRK11147 ABC transporter ATPas 100.0 4E-31 8.7E-36 328.2 22.2 202 383-607 319-526 (635)
390 COG4674 Uncharacterized ABC-ty 100.0 2.6E-31 5.7E-36 259.8 15.1 222 383-611 5-237 (249)
391 PRK13409 putative ATPase RIL; 100.0 5.2E-31 1.1E-35 320.8 20.8 192 383-603 340-536 (590)
392 PLN03140 ABC transporter G fam 100.0 1.1E-30 2.4E-35 343.9 24.4 215 382-606 866-1107(1470)
393 KOG0065 Pleiotropic drug resis 100.0 1.4E-28 3E-33 301.9 37.6 207 399-608 128-350 (1391)
394 COG0396 sufC Cysteine desulfur 100.0 1E-29 2.2E-34 257.2 20.1 215 383-609 3-233 (251)
395 COG1134 TagH ABC-type polysacc 100.0 2.1E-29 4.5E-34 259.2 18.9 187 399-609 40-236 (249)
396 KOG0064 Peroxisomal long-chain 100.0 1.3E-25 2.9E-30 248.8 45.1 194 383-593 481-681 (728)
397 COG4107 PhnK ABC-type phosphon 100.0 5.9E-29 1.3E-33 237.9 15.2 228 383-620 6-252 (258)
398 COG4586 ABC-type uncharacteriz 100.0 7.2E-29 1.6E-33 255.6 13.8 202 399-610 37-247 (325)
399 KOG0061 Transporter, ABC super 100.0 1.5E-28 3.2E-33 299.6 18.2 220 382-609 24-260 (613)
400 PF00005 ABC_tran: ABC transpo 100.0 6.5E-29 1.4E-33 247.9 10.1 136 402-551 1-137 (137)
401 COG0488 Uup ATPase components 100.0 2.2E-27 4.8E-32 280.5 23.8 203 382-610 320-526 (530)
402 cd03270 ABC_UvrA_I The excisio 99.9 3.6E-27 7.8E-32 254.8 16.7 193 398-602 7-226 (226)
403 COG4178 ABC-type uncharacteriz 99.9 9.6E-24 2.1E-28 246.9 45.3 391 764-1170 89-508 (604)
404 COG4133 CcmA ABC-type transpor 99.9 3.6E-27 7.9E-32 231.0 12.7 188 384-586 3-195 (209)
405 cd03271 ABC_UvrA_II The excisi 99.9 7.2E-27 1.6E-31 253.9 16.5 193 401-604 10-261 (261)
406 PRK00635 excinuclease ABC subu 99.9 5.2E-26 1.1E-30 295.1 26.7 210 383-608 600-905 (1809)
407 cd03278 ABC_SMC_barmotin Barmo 99.9 1.5E-26 3.2E-31 243.8 13.5 164 403-595 14-190 (197)
408 cd03289 ABCC_CFTR2 The CFTR su 99.9 1.5E-26 3.2E-31 255.8 13.4 132 1041-1176 1-132 (275)
409 KOG0062 ATPase component of AB 99.9 2.9E-25 6.3E-30 247.4 16.1 196 382-606 79-282 (582)
410 COG4778 PhnL ABC-type phosphon 99.9 2.4E-25 5.2E-30 212.8 12.0 202 384-594 5-226 (235)
411 KOG0059 Lipid exporter ABCA1 a 99.9 8.4E-25 1.8E-29 278.6 15.7 216 382-610 563-788 (885)
412 PF00664 ABC_membrane: ABC tra 99.9 6.4E-22 1.4E-26 220.9 37.2 273 722-996 2-275 (275)
413 cd03279 ABC_sbcCD SbcCD and ot 99.9 1.1E-24 2.4E-29 233.7 13.2 192 383-598 5-211 (213)
414 COG4138 BtuD ABC-type cobalami 99.9 3.9E-25 8.5E-30 212.2 7.3 208 384-610 4-222 (248)
415 cd03272 ABC_SMC3_euk Eukaryoti 99.9 1.7E-24 3.7E-29 238.2 12.4 191 384-594 4-234 (243)
416 KOG0927 Predicted transporter 99.9 2.3E-24 4.9E-29 241.6 10.0 197 383-604 389-591 (614)
417 COG2884 FtsE Predicted ATPase 99.9 3.3E-24 7.1E-29 210.1 7.9 128 1043-1172 2-138 (223)
418 COG1129 MglA ABC-type sugar tr 99.9 4.6E-23 9.9E-28 236.8 18.7 212 383-603 263-484 (500)
419 cd03240 ABC_Rad50 The catalyti 99.9 9.2E-24 2E-28 224.0 11.5 163 405-595 16-197 (204)
420 COG1125 OpuBA ABC-type proline 99.9 1.2E-23 2.7E-28 215.1 9.1 127 1043-1172 2-136 (309)
421 COG1117 PstB ABC-type phosphat 99.9 1.9E-23 4E-28 208.6 9.1 122 1042-1166 7-140 (253)
422 cd03244 ABCC_MRP_domain2 Domai 99.9 7.1E-23 1.5E-27 221.9 13.6 133 1041-1176 1-133 (221)
423 PRK14257 phosphate ABC transpo 99.9 4E-23 8.7E-28 234.6 12.0 125 1038-1163 76-213 (329)
424 cd03273 ABC_SMC2_euk Eukaryoti 99.9 4.8E-23 1E-27 227.1 12.0 182 412-594 25-242 (251)
425 KOG0065 Pleiotropic drug resis 99.9 2.1E-23 4.5E-28 256.7 10.0 199 398-606 803-1018(1391)
426 PRK00349 uvrA excinuclease ABC 99.9 3.8E-22 8.2E-27 250.2 21.2 102 511-612 818-930 (943)
427 cd03274 ABC_SMC4_euk Eukaryoti 99.9 2.8E-23 6.1E-28 221.3 8.3 184 383-595 5-204 (212)
428 KOG0066 eIF2-interacting prote 99.9 4.9E-22 1.1E-26 215.0 17.4 190 383-599 264-488 (807)
429 COG1126 GlnQ ABC-type polar am 99.9 9.7E-23 2.1E-27 204.8 10.5 127 1043-1172 3-137 (240)
430 cd03288 ABCC_SUR2 The SUR doma 99.9 1.9E-22 4E-27 223.2 13.5 135 1039-1176 16-150 (257)
431 cd03248 ABCC_TAP TAP, the Tran 99.9 4E-22 8.6E-27 216.8 13.8 137 1038-1175 7-143 (226)
432 cd03254 ABCC_Glucan_exporter_l 99.9 3.9E-22 8.5E-27 217.4 13.1 132 1041-1175 1-132 (229)
433 cd03252 ABCC_Hemolysin The ABC 99.9 4.3E-22 9.4E-27 218.1 13.1 131 1043-1175 1-131 (237)
434 TIGR00630 uvra excinuclease AB 99.9 2.5E-21 5.3E-26 242.5 21.0 97 511-607 816-923 (924)
435 PF00664 ABC_membrane: ABC tra 99.9 1.1E-18 2.3E-23 194.8 39.7 269 62-333 2-271 (275)
436 COG3845 ABC-type uncharacteriz 99.9 5.4E-21 1.2E-25 214.4 19.9 214 382-606 256-489 (501)
437 COG3839 MalK ABC-type sugar tr 99.9 6.3E-22 1.4E-26 218.9 11.8 126 1042-1172 3-134 (338)
438 cd03253 ABCC_ATM1_transporter 99.9 1.1E-21 2.3E-26 215.0 13.1 131 1043-1176 1-131 (236)
439 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 1.1E-21 2.4E-26 215.1 13.0 132 1043-1175 1-132 (238)
440 cd03245 ABCC_bacteriocin_expor 99.9 1.7E-21 3.7E-26 210.9 14.1 134 1041-1176 1-134 (220)
441 KOG0066 eIF2-interacting prote 99.9 2.3E-21 5E-26 209.8 14.7 190 383-598 586-779 (807)
442 cd03275 ABC_SMC1_euk Eukaryoti 99.9 4.8E-22 1E-26 218.3 9.2 183 413-595 23-233 (247)
443 cd03251 ABCC_MsbA MsbA is an e 99.9 1.8E-21 3.8E-26 213.0 13.3 131 1043-1175 1-131 (234)
444 COG3842 PotA ABC-type spermidi 99.9 1.5E-21 3.2E-26 217.2 10.8 126 1042-1172 5-137 (352)
445 COG1135 AbcC ABC-type metal io 99.9 1.5E-21 3.3E-26 206.4 10.3 130 1043-1172 2-142 (339)
446 KOG0062 ATPase component of AB 99.9 4.6E-21 9.9E-26 214.1 14.5 194 382-600 361-559 (582)
447 KOG0060 Long-chain acyl-CoA tr 99.9 6.2E-19 1.3E-23 199.7 31.6 341 824-1176 186-563 (659)
448 cd03250 ABCC_MRP_domain1 Domai 99.8 2.6E-21 5.6E-26 206.7 12.0 119 1043-1176 1-121 (204)
449 COG3638 ABC-type phosphate/pho 99.8 4.3E-21 9.4E-26 195.6 12.0 123 1042-1166 3-142 (258)
450 COG1120 FepC ABC-type cobalami 99.8 2.6E-21 5.7E-26 205.9 10.5 122 1043-1167 3-134 (258)
451 COG4170 SapD ABC-type antimicr 99.8 8.3E-21 1.8E-25 187.5 12.8 226 385-619 5-258 (330)
452 PRK13650 cbiO cobalt transport 99.8 4E-21 8.7E-26 214.9 11.9 131 1042-1172 4-141 (279)
453 COG1122 CbiO ABC-type cobalt t 99.8 4.5E-21 9.8E-26 204.7 11.7 127 1042-1170 3-137 (235)
454 cd03369 ABCC_NFT1 Domain 2 of 99.8 2.4E-21 5.3E-26 207.5 9.5 127 1040-1172 4-130 (207)
455 TIGR00960 3a0501s02 Type II (G 99.8 3.6E-21 7.7E-26 207.7 10.8 128 1043-1171 2-138 (216)
456 TIGR02314 ABC_MetN D-methionin 99.8 4.6E-21 1E-25 218.0 10.8 130 1043-1172 2-141 (343)
457 COG3840 ThiQ ABC-type thiamine 99.8 4.6E-21 1E-25 186.2 8.9 123 1043-1172 2-130 (231)
458 COG1127 Ttg2A ABC-type transpo 99.8 6.6E-21 1.4E-25 194.8 10.0 125 1042-1169 8-143 (263)
459 PRK13647 cbiO cobalt transport 99.8 8.1E-21 1.8E-25 211.8 11.4 129 1042-1172 4-139 (274)
460 COG1116 TauB ABC-type nitrate/ 99.8 9.7E-21 2.1E-25 197.2 10.3 123 1042-1172 3-131 (248)
461 cd03290 ABCC_SUR1_N The SUR do 99.8 1.6E-20 3.4E-25 202.9 12.4 129 1044-1176 2-134 (218)
462 COG1245 Predicted ATPase, RNas 99.8 6.5E-20 1.4E-24 201.3 16.2 178 390-594 342-530 (591)
463 PRK13631 cbiO cobalt transport 99.8 1.5E-20 3.3E-25 213.0 11.6 126 1042-1167 21-172 (320)
464 cd03276 ABC_SMC6_euk Eukaryoti 99.8 3.3E-20 7.1E-25 195.8 13.1 172 402-597 12-192 (198)
465 PRK14269 phosphate ABC transpo 99.8 1.4E-20 3E-25 207.2 10.6 123 1042-1167 2-134 (246)
466 cd03261 ABC_Org_Solvent_Resist 99.8 1.4E-20 3.1E-25 205.8 10.6 125 1043-1170 1-135 (235)
467 PRK11629 lolD lipoprotein tran 99.8 1.6E-20 3.5E-25 204.9 11.0 128 1043-1170 6-144 (233)
468 PRK13635 cbiO cobalt transport 99.8 1.8E-20 3.9E-25 209.4 11.5 129 1043-1172 6-141 (279)
469 cd03260 ABC_PstB_phosphate_tra 99.8 1.4E-20 3.1E-25 204.7 10.4 123 1043-1168 1-136 (227)
470 cd03266 ABC_NatA_sodium_export 99.8 2.4E-20 5.2E-25 201.6 11.7 126 1043-1169 2-134 (218)
471 PRK14250 phosphate ABC transpo 99.8 2.6E-20 5.6E-25 204.2 11.8 123 1042-1167 3-127 (241)
472 TIGR02673 FtsE cell division A 99.8 2.1E-20 4.6E-25 201.4 10.7 126 1043-1170 2-136 (214)
473 PRK13646 cbiO cobalt transport 99.8 2.3E-20 5E-25 209.5 11.0 127 1043-1169 3-143 (286)
474 PRK13643 cbiO cobalt transport 99.8 1.8E-20 3.9E-25 210.4 10.0 128 1043-1170 2-143 (288)
475 PRK13637 cbiO cobalt transport 99.8 2.6E-20 5.5E-25 209.1 11.1 125 1043-1167 3-140 (287)
476 cd03226 ABC_cobalt_CbiO_domain 99.8 1.9E-20 4.1E-25 200.2 9.5 124 1044-1172 1-127 (205)
477 PRK13632 cbiO cobalt transport 99.8 2.8E-20 6E-25 207.5 11.2 129 1042-1171 7-142 (271)
478 cd03292 ABC_FtsE_transporter F 99.8 2.7E-20 5.9E-25 200.7 10.6 128 1043-1172 1-137 (214)
479 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.8 2.2E-20 4.8E-25 201.9 9.9 127 1043-1169 1-138 (218)
480 PRK13642 cbiO cobalt transport 99.8 4.2E-20 9.1E-25 206.5 12.4 130 1042-1171 4-140 (277)
481 cd03264 ABC_drug_resistance_li 99.8 3E-20 6.5E-25 199.7 10.7 122 1043-1169 1-128 (211)
482 PRK10575 iron-hydroxamate tran 99.8 3.8E-20 8.2E-25 205.8 11.2 128 1042-1172 11-148 (265)
483 cd03268 ABC_BcrA_bacitracin_re 99.8 3.8E-20 8.2E-25 198.5 10.6 122 1043-1169 1-124 (208)
484 cd03263 ABC_subfamily_A The AB 99.8 4E-20 8.6E-25 200.3 10.8 123 1043-1167 1-129 (220)
485 cd03258 ABC_MetN_methionine_tr 99.8 4.4E-20 9.6E-25 201.7 11.1 129 1043-1171 2-140 (233)
486 PRK13652 cbiO cobalt transport 99.8 4.9E-20 1.1E-24 206.0 11.7 128 1043-1172 4-138 (277)
487 COG1136 SalX ABC-type antimicr 99.8 7.5E-20 1.6E-24 191.0 12.2 128 1043-1170 2-141 (226)
488 PRK13540 cytochrome c biogenes 99.8 6.2E-20 1.3E-24 195.3 11.8 120 1043-1166 2-122 (200)
489 PRK10908 cell division protein 99.8 4.5E-20 9.8E-25 199.9 10.9 126 1043-1170 2-136 (222)
490 PRK13640 cbiO cobalt transport 99.8 7.4E-20 1.6E-24 205.0 12.8 131 1041-1172 4-144 (282)
491 cd03256 ABC_PhnC_transporter A 99.8 5.6E-20 1.2E-24 202.1 11.6 125 1043-1169 1-142 (241)
492 TIGR02315 ABC_phnC phosphonate 99.8 6.6E-20 1.4E-24 201.8 12.0 125 1043-1169 2-143 (243)
493 PRK10247 putative ABC transpor 99.8 8.5E-20 1.8E-24 197.9 12.5 118 1042-1162 7-127 (225)
494 cd03259 ABC_Carb_Solutes_like 99.8 3.5E-20 7.6E-25 199.5 9.4 123 1043-1170 1-129 (213)
495 cd03225 ABC_cobalt_CbiO_domain 99.8 4.8E-20 1E-24 198.2 10.1 126 1044-1170 1-133 (211)
496 PRK10584 putative ABC transpor 99.8 7.8E-20 1.7E-24 199.1 11.8 130 1042-1171 6-146 (228)
497 PRK11153 metN DL-methionine tr 99.8 5.5E-20 1.2E-24 211.0 11.1 128 1043-1170 2-139 (343)
498 PRK13633 cobalt transporter AT 99.8 6E-20 1.3E-24 205.6 11.1 131 1042-1172 4-145 (280)
499 cd03231 ABC_CcmA_heme_exporter 99.8 9.6E-20 2.1E-24 193.9 12.1 121 1043-1168 1-122 (201)
500 TIGR02211 LolD_lipo_ex lipopro 99.8 7.2E-20 1.6E-24 198.4 11.2 128 1043-1170 2-140 (221)
No 1
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.5e-177 Score=1608.08 Aligned_cols=1109 Identities=56% Similarity=0.915 Sum_probs=1008.4
Q ss_pred cchHHHHhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 43 SVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFL 122 (1178)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 122 (1178)
..+++++|+|..+.++.+++++++++++.++++|++.+++|++++.+...+.. ...+....++++++++|++.++..|+
T Consensus 12 ~~~~~~lf~~a~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~-~~~~~~~~~~l~~~~lg~~~~~~~~~ 90 (1228)
T KOG0055|consen 12 TVSFFKLFRFADRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNK-IASSEVSKVALYFVYLGVGVFISGFI 90 (1228)
T ss_pred ccchHHheeccchhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccch-hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66799999999999999999999999999999999999999999988765432 33345667888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 123 QVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIK 202 (1178)
Q Consensus 123 ~~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (1178)
+..||.+.+.|...++|..++++++|++++|||.. .+|++.+++++|++.|++.+++.+..+++.+.++++.+++.|+.
T Consensus 91 q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~-~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~ 169 (1228)
T KOG0055|consen 91 QVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTN-STGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYY 169 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecc-cccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999985 77999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Q 001041 203 GWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQ 282 (1178)
Q Consensus 203 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 282 (1178)
.|+++++++.+.|++.+....+.+.+.+...+.++.++++.+...|++.++|||.+|+.|+.+.++|.+.+....+...+
T Consensus 170 ~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~ 249 (1228)
T KOG0055|consen 170 GWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIK 249 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001041 283 EGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETIN 362 (1178)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 362 (1178)
..++.++..++..++.++.+++.+|+|+.++..+..++|.+++++..++.....+++..|++..+..+..++.++++.++
T Consensus 250 ~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~ 329 (1228)
T KOG0055|consen 250 KGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETID 329 (1228)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhc
Confidence 99999999999999999999999999999999999999999999888898899999999999999999999999999999
Q ss_pred cCCCCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCc
Q 001041 363 RKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442 (1178)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~ 442 (1178)
..|+..+....+......+|.|+|+||+|+||+|++.++|+|+||+|++||+++|||||||||||++++|.|+|+|++|+
T Consensus 330 ~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~ 409 (1228)
T KOG0055|consen 330 RKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGE 409 (1228)
T ss_pred CCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCce
Confidence 98877655433334455689999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCC
Q 001041 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522 (1178)
Q Consensus 443 i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~ 522 (1178)
|.|||.|+++++.+|+|++||.|.|+|.||++||+|||.||.|+++.+++.++|+++++++++..+|+|++|.+||+|.+
T Consensus 410 V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~q 489 (1228)
T KOG0055|consen 410 VLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQ 489 (1228)
T ss_pred EEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEec
Q 001041 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 523 lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g 602 (1178)
|||||||||||||||+++|+||||||||||||+++++.++++|++..+|||+|+||||++++++||+|+||++|+|+|.|
T Consensus 490 LSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G 569 (1228)
T KOG0055|consen 490 LSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQG 569 (1228)
T ss_pred CChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHhcCCCchHHHHHHHHhhcccchhccccccccchhhhhhhcccccccccccccCCCCCCCCCCcccccccCCCCCC
Q 001041 603 THSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQ 682 (1178)
Q Consensus 603 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1178)
+|+||++.+ |.|.++++.|+.....++ .++.+ +. .+....+. + ... +... .. +.. ... . .
T Consensus 570 ~h~ELi~~~-G~Y~~lv~~Q~~~~~~~~-~~~~~--~~-~~~~~~s~-~--~s~--~~~~---~~-~~~-~~~-~----~ 629 (1228)
T KOG0055|consen 570 THDELIALG-GIYSSLVRLQELEKAAED-EEEEE--SL-KEERSRSL-K--SSS--SSPS---LS-RGS-NRS-N----L 629 (1228)
T ss_pred CHHHHHhcc-chHHHHHHHHhhhhhhhc-ccccc--ch-hhhhhhcc-c--ccc--cccc---cc-CCc-ccc-c----c
Confidence 999999995 999999999876554332 01000 00 00000000 0 000 0000 00 000 000 0 0
Q ss_pred CCcccCCCCCCCCCCCCCCCCcchhHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc-hhhhhhH
Q 001041 683 FADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPH-ELKKDSR 761 (1178)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 761 (1178)
.......+...... ........+++++.+.+|.|++++++++++++.++..|++++.++.++..+...++ .......
T Consensus 630 ~~~~~~~e~~~~~~--~~~~~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~ 707 (1228)
T KOG0055|consen 630 LSVKPEGEDPEEPV--SEEDEKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVR 707 (1228)
T ss_pred cccccccccccccc--ccccccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 00000000000000 11114566888999999999999999999999999999999999999998875443 3333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHH
Q 001041 762 FWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDAL 841 (1178)
Q Consensus 762 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l 841 (1178)
.|.++|++++++..++.+++.+++..++++++.++|.++|+++++++++|||.++|+ |.|.+|+.+|...++..+.+.+
T Consensus 708 ~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl 786 (1228)
T KOG0055|consen 708 AWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRL 786 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999999999999999898 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccch
Q 001041 842 ARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAE 921 (1178)
Q Consensus 842 ~~~~~~~~~~i~~ii~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e 921 (1178)
..+++++..++.++++.|+++|+|+++++++.|++++..+.+.+++....++.++...+.+....|++++++||++|++|
T Consensus 787 ~~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e 866 (1228)
T KOG0055|consen 787 SLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAE 866 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 001041 922 EKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSS 1001 (1178)
Q Consensus 922 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~ 1001 (1178)
+++.+.|.+.++...+...|...+.+..+++++++.++.+++++|+|++++.+|.+++.+++.++..+.+....+++...
T Consensus 867 ~~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s 946 (1228)
T KOG0055|consen 867 EKFMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASS 946 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCC
Q 001041 1002 FSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESG 1081 (1178)
Q Consensus 1002 ~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SG 1081 (1178)
+.+++.++..++.++++++|.+|.+++..+.+...++.+|+|+|+||+|+||+||+.+||+|+||+|++||+||||||||
T Consensus 947 ~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SG 1026 (1228)
T KOG0055|consen 947 YAPDISKAKIAAGSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSG 1026 (1228)
T ss_pred hCcHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCC
Confidence 99999999999999999999998776654344445668999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCc
Q 001041 1082 SGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANA 1161 (1178)
Q Consensus 1082 SGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~ 1161 (1178)
|||||++.||.|||||++|.|.|||+||+++++++||++|++|.|||.||++||||||.||.. ++|++||.+|||.||+
T Consensus 1027 sGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~-~vs~~eIi~Aak~ANa 1105 (1228)
T KOG0055|consen 1027 SGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSE-EVSEEEIIEAAKLANA 1105 (1228)
T ss_pred CCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCC-CCCHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999999943 5999999999999999
Q ss_pred hHHHhhcccccccccc
Q 001041 1162 HKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1162 ~dfI~~LP~gldT~v~ 1177 (1178)
|+||.+||+||||+||
T Consensus 1106 H~FI~sLP~GyDT~vG 1121 (1228)
T KOG0055|consen 1106 HNFISSLPQGYDTRVG 1121 (1228)
T ss_pred HHHHhcCcCcccCccC
Confidence 9999999999999997
No 2
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=4.7e-144 Score=1419.96 Aligned_cols=1120 Identities=28% Similarity=0.462 Sum_probs=912.1
Q ss_pred ccchHHHHhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 42 ESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASF 121 (1178)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 121 (1178)
.++++..+|+|..+.++.+++++++++++.+++.|+++++++.+++.+.... ....+++.+++++++.+++.|
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~-------~~~~~~~~~~~~~i~~~~~~~ 115 (1466)
T PTZ00265 43 QKIPFFLPFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGE-------NVNDIIFSLVLIGIFQFILSF 115 (1466)
T ss_pred ccccHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------hHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999999999999999754211 122334556677888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 122 LQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFI 201 (1178)
Q Consensus 122 ~~~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (1178)
++.+++.+.+.+...++|.+++++++++|++|||.. +.|++++++++|++.++..+...+..++..+..+++.++++++
T Consensus 116 ~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~-~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~ 194 (1466)
T PTZ00265 116 ISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNN-PGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLF 194 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999975 8999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Q 001041 202 KGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGV 281 (1178)
Q Consensus 202 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 281 (1178)
++|.+++++++++|+++++..++.+..++..+..++..++..+.+.|.++|+++||+|+.|+.+.++|.+......+...
T Consensus 195 ~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~ 274 (1466)
T PTZ00265 195 KNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYIL 274 (1466)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888888888888999999999999999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 282 QEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEE--------GYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAA 353 (1178)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--------~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~ 353 (1178)
+.....++..++..++..+.+++.+|+|++++..+ .++++.+++++...+.....+..+.+.+..+..+..+
T Consensus 275 k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a 354 (1466)
T PTZ00265 275 KANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEA 354 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888777777777888889999999988875 4778888877766666666667778888999999999
Q ss_pred HHHHHHHhccCCCCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHh
Q 001041 354 AFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIE 433 (1178)
Q Consensus 354 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~ 433 (1178)
+.|+++.++.+++.+... .+...+. .+.|+++||+|+|+++++.++|+|+||+|++||+++||||||||||||+++|+
T Consensus 355 ~~ri~~ii~~~~~~~~~~-~~~~~~~-~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~ 432 (1466)
T PTZ00265 355 TNSLYEIINRKPLVENND-DGKKLKD-IKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIE 432 (1466)
T ss_pred HHHHHHHHcCCCCCCCCC-CCccCCC-CCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 999999998876643211 1111122 24799999999998655557999999999999999999999999999999999
Q ss_pred ccCCCCCCcEEE-CCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCC---------------------------
Q 001041 434 RFYDPQAGEVLI-DGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKD--------------------------- 485 (1178)
Q Consensus 434 g~~~~~~G~i~i-~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~--------------------------- 485 (1178)
|+|+|++|+|.+ ||+++++++..++|++|+||+|+|.+|++||+|||.+|.+
T Consensus 433 gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (1466)
T PTZ00265 433 RLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRN 512 (1466)
T ss_pred HhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccc
Confidence 999999999999 6799999999999999999999999999999999999742
Q ss_pred ------------------------------CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHH
Q 001041 486 ------------------------------DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1178)
Q Consensus 486 ------------------------------~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lAR 535 (1178)
+.++++++++++.+++++++..+|+|++|.+|++|.+|||||||||+|||
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIAR 592 (1466)
T PTZ00265 513 SCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIAR 592 (1466)
T ss_pred cccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHH
Confidence 24568899999999999999999999999999999999999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhhccCEEEEEeCC-----------------
Q 001041 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRNADMIAVIHRG----------------- 596 (1178)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G----------------- 596 (1178)
|++++|+|||||||||+||+++++.+++.++++. +++|+|+||||++++..||+|++|++|
T Consensus 593 All~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~ 672 (1466)
T PTZ00265 593 AIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTK 672 (1466)
T ss_pred HHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCccccccccccccccccc
Confidence 9999999999999999999999999999999886 479999999999999999999999986
Q ss_pred ------------------------------EEEEecChhHHhcCCCchHHHHHHHHhhcccchhccccccccchhhhhhh
Q 001041 597 ------------------------------KIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLR 646 (1178)
Q Consensus 597 ------------------------------~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (1178)
+|+|+|+|+||++..++.|+.+++.|........................
T Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 752 (1466)
T PTZ00265 673 DNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSAYK 752 (1466)
T ss_pred cccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhcccccccccccccccccccccccc
Confidence 59999999999986689999999876543211100000000000000000
Q ss_pred cccccccccccccCCCCCCCCCCcccccccCCCCCCCCcccCCCCCCCCCCCC----CCCCcchhHhhhhhcCChhHHHH
Q 001041 647 HSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQFADTALGEPAGPSQPTE----EVAPEVPTRRLAYLNKPEIPVIL 722 (1178)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 722 (1178)
.................. .. +...............+.....+.....+ ........++++.+.+++++.++
T Consensus 753 ~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 828 (1466)
T PTZ00265 753 DSERGYDPDEMNGNSKHE-NE---SASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKDVT 828 (1466)
T ss_pred cccccccccccccccccc-cc---ccccccccccccccccchhccccchhhhhccccccccchhHHHHHHHHHHHHHHHH
Confidence 000000000000000000 00 00000000000000000000000000000 00011123334444555666688
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 723 AGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFE 802 (1178)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~ 802 (1178)
++++++++.+++.|+++++++.+++.++.. .........|.+++++++++..++.+++.++..+++.++..++|.++|+
T Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~ 907 (1466)
T PTZ00265 829 IIALSILVAGGLYPVFALLYAKYVSTLFDF-ANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFE 907 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888899999999999999999877532 1112224456777777888888999999999999999999999999999
Q ss_pred HHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 001041 803 KVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYT 882 (1178)
Q Consensus 803 ~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l~l~~l~~~pl~~~~~~~ 882 (1178)
+++++|++|||++++++|++++|+++|++.++..+...+..++..++.++++++++++++|.+++++++++|++......
T Consensus 908 ~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~ 987 (1466)
T PTZ00265 908 NILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAI 987 (1466)
T ss_pred HHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999656899999999999999999999999999999999999999999999999988876555444333222
Q ss_pred HHHHHhhhH-H--------------HHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHHHh
Q 001041 883 QMKFMKGFS-A--------------DAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSG 947 (1178)
Q Consensus 883 ~~~~~~~~~-~--------------~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 947 (1178)
..+...... + ..++..++.+..++|++.|+++||+|+.|+++.++|.+..+...+...+.....+
T Consensus 988 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 1067 (1466)
T PTZ00265 988 RARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNS 1067 (1466)
T ss_pred HHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111000 0 0123356678899999999999999999999999999999999999999999889
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCCC
Q 001041 948 GGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKID 1027 (1178)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~ 1027 (1178)
...++..++..+..++++|+|++++..|.+++|++++++.+..+...++..+.++...++++..+++|++++++.+++.+
T Consensus 1068 ~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~ 1147 (1466)
T PTZ00265 1068 MLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNID 1147 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCC
Confidence 99999999888889999999999999999999999998877777667788899999999999999999999999876442
Q ss_pred CCCCCCCc---ccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCC-------
Q 001041 1028 PSDESGTI---LEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP------- 1097 (1178)
Q Consensus 1028 ~~~~~~~~---~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p------- 1097 (1178)
..+..... ++...|+|+|+||+|+||++++.+||+|+||+|+|||+|||||+||||||||++||+|||||
T Consensus 1148 ~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~ 1227 (1466)
T PTZ00265 1148 VRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIV 1227 (1466)
T ss_pred CCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccc
Confidence 21111111 12346889999999999876666899999999999999999999999999999999999999
Q ss_pred -----------------------------------------------CCCeEEECCcccCCCChHHHHHhcccccccccc
Q 001041 1098 -----------------------------------------------DAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVL 1130 (1178)
Q Consensus 1098 -----------------------------------------------~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~L 1130 (1178)
++|+|+|||+||+++++++||++|++|||||+|
T Consensus 1228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~L 1307 (1466)
T PTZ00265 1228 FKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPML 1307 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcc
Confidence 699999999999999999999999999999999
Q ss_pred ccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1131 FNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1131 F~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
|+|||||||+||+ +++|||||++|||.|++||||++||+||||.|+
T Consensus 1308 F~gTIreNI~~g~-~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VG 1353 (1466)
T PTZ00265 1308 FNMSIYENIKFGK-EDATREDVKRACKFAAIDEFIESLPNKYDTNVG 1353 (1466)
T ss_pred ccccHHHHHhcCC-CCCCHHHHHHHHHHcCCHHHHHhCccccCCccC
Confidence 9999999999996 479999999999999999999999999999986
No 3
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.8e-144 Score=1352.62 Aligned_cols=995 Identities=22% Similarity=0.267 Sum_probs=763.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCChhhhhc---cCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001041 127 WMITGERQATRIRGLYLKTILRQDVAFFDN---ETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKG 203 (1178)
Q Consensus 127 ~~~~~~~~~~~lr~~~~~~il~~~~~~f~~---~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (1178)
+.+...+.+.++|..+...++++.+..-.. ..+.|+|+|.|++|++++++........+...+..+++...+...++
T Consensus 262 ~~~~~~~~g~r~R~al~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~~l~lLy~~LG 341 (1381)
T KOG0054|consen 262 YFFVSFRVGMRLRSALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIILALYLLYGLLG 341 (1381)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344567899999998887777776543221 23799999999999999999887666666666666666656666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Q 001041 204 WLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQE 283 (1178)
Q Consensus 204 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 283 (1178)
|. +++.++++.+++.+..++.+.+++.+.+.++..++|.+.++|.++|||+||+|+||+.|.++..+.++++.+..++.
T Consensus 342 ~s-a~~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~ 420 (1381)
T KOG0054|consen 342 PS-ALAGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKS 420 (1381)
T ss_pred hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 63 44555566667777888889999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001041 284 GLAAGIGLGMVMLIVFCSYALSVWYGGKL-ILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETIN 362 (1178)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 362 (1178)
.+..++......+...+..++ .++.+. ...+.+++..+|+.+..+-.+..++..++..+..+.++.++.+|+.+++.
T Consensus 421 ~~~~~~~~~~~~~~p~lv~~~--tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~ 498 (1381)
T KOG0054|consen 421 AYLSALNSFLNFFSPVLVSVV--TFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLL 498 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888777665443333222222 222222 33556788788887777777778888877789999999999999999997
Q ss_pred cCCCCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCc
Q 001041 363 RKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442 (1178)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~ 442 (1178)
.++. ++......+..+.+..|+++|.+|+|+.....+.|+||||+|++|+++||||++|||||||+++|+|+++..+|+
T Consensus 499 ~~e~-~~~~~~~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~ 577 (1381)
T KOG0054|consen 499 SEEL-DPDSVERSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGS 577 (1381)
T ss_pred Cccc-CccccccCCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccce
Confidence 7543 222211112223344699999999998644456999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCC
Q 001041 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522 (1178)
Q Consensus 443 i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~ 522 (1178)
|.++| .+|||||+||+|+|||||||+||.| +++++++++.+.|+|++|++.||.||.|+|||+|.|
T Consensus 578 v~v~g-------------siaYv~Q~pWI~ngTvreNILFG~~-~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGin 643 (1381)
T KOG0054|consen 578 VAVNG-------------SVAYVPQQPWIQNGTVRENILFGSP-YDEERYDKVIKACALKKDLEILPFGDLTEIGERGIN 643 (1381)
T ss_pred EEEcC-------------eEEEeccccHhhCCcHHHhhhcCcc-ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccC
Confidence 99999 7999999999999999999999987 789999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHH-HHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEe
Q 001041 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKV-VQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEK 601 (1178)
Q Consensus 523 lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~-i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~ 601 (1178)
|||||||||+||||+|+|+||||||||+||||+|+.++ +.+||+.++++||+|+|||+++++++||+|++|++|+|.+.
T Consensus 644 LSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~ 723 (1381)
T KOG0054|consen 644 LSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVES 723 (1381)
T ss_pred CcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecc
Confidence 99999999999999999999999999999999998764 56889999999999999999999999999999999999999
Q ss_pred cChhHHhcCCCchHHHHHHHHhhcccchhccccccccchhhhhhhcccccccccccccCCCCCCCCCCcccccccCCCCC
Q 001041 602 GTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSG 681 (1178)
Q Consensus 602 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (1178)
|+|+||++. +..|.++....+.+.+.+......+ . .+..... ..+........ . . .
T Consensus 724 Gty~el~~~-~~~~~~l~~~~~~~~~~~~~~~~~~--~--~~~~~~~-----~~~~~~~~~~~--------~-----~-~ 779 (1381)
T KOG0054|consen 724 GTYEELLKS-GGDFAELAHEEESEQEEEASEKDLE--S--GESSRES-----ESRSLESLSSE--------E-----E-K 779 (1381)
T ss_pred cCHHHHHhc-chhHHHHhhccchhhcccccccccc--c--cccccch-----hhhhhhhhccc--------c-----c-c
Confidence 999999976 6777777332221111100000000 0 0000000 00000000000 0 0 0
Q ss_pred CCCcccCCCCCCCCCCCCCCCCcchhHhhhhhcCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhh
Q 001041 682 QFADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKP--EIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKD 759 (1178)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 759 (1178)
... ......+..+.++...+...++.++.|.+. .+...+..+++.+...++.....+|+++|.+........ ...
T Consensus 780 ~~~--~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~-~~~ 856 (1381)
T KOG0054|consen 780 SKD--EKEEEDKLVQEEERETGKVSWSVYKKYIKAAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTT-TVS 856 (1381)
T ss_pred ccc--ccchhhHHHHHHHHhcCEeeHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc-CCC
Confidence 000 000000000001112233344444444333 222222233444445555556667777776643221100 023
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHH
Q 001041 760 SRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGD 839 (1178)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~ 839 (1178)
...+..+|.+++++..++..++.+.+...+.++++.||++|+++++|+||+||| .+|+|+|+|||++|++.+|..+|.
T Consensus 857 ~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFd--tTP~GRILNRFSkD~~~vD~~Lp~ 934 (1381)
T KOG0054|consen 857 TSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFD--TTPTGRILNRFSKDIDTVDVLLPF 934 (1381)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcC--CCCccchhhhcccchHHHHHhhHH
Confidence 557889999999999999999999999999999999999999999999999999 599999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH----HHHHHHHHHhchhHHH
Q 001041 840 ALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYE----EASQVANDAVGSIRTV 915 (1178)
Q Consensus 840 ~l~~~~~~~~~~i~~ii~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~E~l~gi~tI 915 (1178)
.+..++.+++.+++.++++.+..|++. ++++|+.+++ +++++++.+.+|+.++..+ ...+|++|+++|+.||
T Consensus 935 ~~~~~~~~~~~~l~~~~vi~~~~P~fl---i~~~pl~v~~-~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTI 1010 (1381)
T KOG0054|consen 935 TLEFFLQSLLNVLGILVVISYVTPWFL---IAIIPLGVIY-YFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTI 1010 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhHHHH---HHHHHHHHHH-HHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCccee
Confidence 999999999999999999999888654 3444554443 4455555666777776544 4578999999999999
Q ss_pred HHccchHHHHHHHHHHhhhHHHhhhHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 001041 916 ASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGAS-FFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAI 994 (1178)
Q Consensus 916 raf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~ 994 (1178)
|||++|++|.+++.+..|.+.+..+-..... .|.++. .++..+....+..+. .+...+..+.|..-..+.|...+..
T Consensus 1011 RAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~-RWla~Rle~ig~~~v~~~al~~-vl~~~~~~~~g~vGLslsyal~lt~ 1088 (1381)
T KOG0054|consen 1011 RAFGKEERFIQENDELIDENSRAFFLSISAN-RWLAVRLELLGNLVVLIAALFA-VLLPSGLISPGLVGLSLSYALQLTG 1088 (1381)
T ss_pred eeccccHHHHHHHHHHhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-HHccCCCCCcchHHHHHHHHHHHHH
Confidence 9999999999999999999988765433322 222222 222222222222222 2222222556777777788888888
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHHHhcCCCCCCCCCCC--CCcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCC
Q 001041 995 GISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDES--GTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGK 1072 (1178)
Q Consensus 995 ~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~--~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge 1072 (1178)
.+..+.....+.++.+.|+||+.++.+.|+|.+...+. +++.+|.+|+|+|+|++.+|.++ .++|||||||+|+|||
T Consensus 1089 ~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~e 1167 (1381)
T KOG0054|consen 1089 LLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGE 1167 (1381)
T ss_pred HHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCc
Confidence 88899999999999999999999999987762221111 34456789999999999999754 3579999999999999
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHH
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEI 1152 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei 1152 (1178)
|||||||||||||||+++|+|+.+|.+|+|.|||+||+++++++||+++++|||||+||+||+|+||+. .+++||+||
T Consensus 1168 KVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDP--f~e~sD~~I 1245 (1381)
T KOG0054|consen 1168 KVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDP--FDEYSDDEI 1245 (1381)
T ss_pred eEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCc--ccccCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999954 568999999
Q ss_pred HHHHHHcCchHHHhhcccccccccc
Q 001041 1153 QAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1153 ~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
|+|+|+++++++|+++|+|||++|.
T Consensus 1246 W~ALe~~~Lk~~v~~~p~~Ld~~v~ 1270 (1381)
T KOG0054|consen 1246 WEALERCQLKDVVSSLPGGLDSEVS 1270 (1381)
T ss_pred HHHHHHhChHHHHhhCCcCCCceec
Confidence 9999999999999999999999873
No 4
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=5.5e-131 Score=1308.35 Aligned_cols=984 Identities=17% Similarity=0.219 Sum_probs=714.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHH
Q 001041 129 ITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIA-FIKGWLLT 207 (1178)
Q Consensus 129 ~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~ 207 (1178)
..+.++...++..+++++++.+...+++ .++|+++|++++|++.+++.+.. +..++...+.++..++++ ..++|. +
T Consensus 367 ~~~~~ir~~L~~~i~~k~L~l~~~~~~~-~~~G~ivnl~s~Dv~~i~~~~~~-l~~l~~~pl~ii~~~~lL~~~lg~~-~ 443 (1622)
T PLN03130 367 RVGFRLRSTLVAAVFRKSLRLTHEGRKK-FTSGKITNLMTTDAEALQQICQQ-LHTLWSAPFRIIIAMVLLYQQLGVA-S 443 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHhcCChhhcCC-CCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 4555566666668889999999988876 48999999999999999998743 333333333333322222 222332 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 208 LVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAA 287 (1178)
Q Consensus 208 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (1178)
++.++++.+++++..++.+..++..++.++..+++.+.+.|.++|+++||+|+||+.+.+++.+.++++.+...+.....
T Consensus 444 l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~ 523 (1622)
T PLN03130 444 LIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLS 523 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222333444445566777778888888899999999999999999999999999999999999888877766665555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 001041 288 GIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEI 367 (1178)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 367 (1178)
++...+..... ..+..+++|.+++..+.++++.+++++.++.....++..++..+..+..+..+.+|+.++++.+++.
T Consensus 524 ~~~~~~~~~~~--~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~ 601 (1622)
T PLN03130 524 AFNSFILNSIP--VLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERV 601 (1622)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 44333222211 1233455677777788999999998877777777788887778999999999999999999765432
Q ss_pred CcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCC-CcEEEC
Q 001041 368 DAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA-GEVLID 446 (1178)
Q Consensus 368 ~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~-G~i~i~ 446 (1178)
.... .+..+..+.|+++|++|+|+.++++++|+|+||+|++||+++||||||||||||+++|+|+++|.+ |+|.+.
T Consensus 602 ~~~~---~~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~ 678 (1622)
T PLN03130 602 LLPN---PPLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIR 678 (1622)
T ss_pred cccC---CcccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEc
Confidence 1111 111112346999999999986545679999999999999999999999999999999999999999 999865
Q ss_pred CeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChH
Q 001041 447 GINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1178)
Q Consensus 447 g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgG 526 (1178)
| +|+||||+||+|++||||||+||.| +++++++++++.|+++++++.||+|++|.+||+|.+||||
T Consensus 679 ~-------------~Iayv~Q~p~LfngTIreNI~fg~~-~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGG 744 (1622)
T PLN03130 679 G-------------TVAYVPQVSWIFNATVRDNILFGSP-FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGG 744 (1622)
T ss_pred C-------------eEEEEcCccccCCCCHHHHHhCCCc-ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHH
Confidence 4 8999999999999999999999987 5899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHH-HHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChh
Q 001041 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVV-QEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHS 605 (1178)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i-~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~ 605 (1178)
|||||+||||+|++|+||||||||||||+++++++ .+++++.++++|+|+|||+++.+..||+|++|++|+|+++|+|+
T Consensus 745 QKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~ 824 (1622)
T PLN03130 745 QKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYE 824 (1622)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHH
Confidence 99999999999999999999999999999998866 56788778899999999999999999999999999999999999
Q ss_pred HHhcCCCchHHHHHHHHhhcccchhccccccccchhhhhhhcccccccccccccCCCCCCCCCCcccccccCCCCCCCCc
Q 001041 606 KLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQFAD 685 (1178)
Q Consensus 606 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (1178)
|++++ ++.|.++...+....+..+.... +. .. + .. ... .... .. ....... . ....
T Consensus 825 eL~~~-~~~~~~l~~~~~~~~~~~~~~~~-~~-~~--~---~~-----~~~-~~~~-~~-----~~~~~~~--~--~~~~ 880 (1622)
T PLN03130 825 ELSNN-GPLFQKLMENAGKMEEYVEENGE-EE-DD--Q---TS-----SKP-VANG-NA-----NNLKKDS--S--SKKK 880 (1622)
T ss_pred HHHhc-chhHHHHHHhccccccccccccc-cc-cc--c---cc-----ccc-cccc-cc-----ccccccc--c--cccc
Confidence 99976 67788777543211110000000 00 00 0 00 000 0000 00 0000000 0 0000
Q ss_pred ccCCCCCCCCCCCCCCCCcchhHhhhhhcCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHH
Q 001041 686 TALGEPAGPSQPTEEVAPEVPTRRLAYLNKP--EIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFW 763 (1178)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 763 (1178)
...........+++..+...+..+.+|.+. ..+.+++.+++.++..++....++|++.|.+..... ......|
T Consensus 881 -~~~~~~~~~~~e~~~~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~----~~~~~~~ 955 (1622)
T PLN03130 881 -SKEGKSVLIKQEERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPK----THGPLFY 955 (1622)
T ss_pred -ccccchhhhhHHHHhcCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC----CCchhHH
Confidence 000000000001111122234434433322 222222333333333444445556677666543211 1123456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHH
Q 001041 764 ALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALAR 843 (1178)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~ 843 (1178)
+++|++++++..++.+++.+++...+.++.+++|.+++++++++|++||| ++|+|+|+|||++|++.++..++..+..
T Consensus 956 ~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd--~~~~G~IlnR~s~Di~~id~~l~~~~~~ 1033 (1622)
T PLN03130 956 NLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFH--TNPLGRIINRFAKDLGDIDRNVAVFVNM 1033 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhc--cCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888889999999999999999999999999999999999999 5999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccc
Q 001041 844 IVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGY---TQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCA 920 (1178)
Q Consensus 844 ~~~~~~~~i~~ii~~~~~~~~l~l~~l~~~pl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~ 920 (1178)
++..++.+++.++++++++|...+ +++|+.+++.. ++.+..++..+......+...+++.|+++|++|||+|+.
T Consensus 1034 ~~~~~~~~i~~~i~i~~~~~~~~~---~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~ 1110 (1622)
T PLN03130 1034 FLGQIFQLLSTFVLIGIVSTISLW---AIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKA 1110 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcH
Confidence 999999999999988888874332 23333322222 222222223333334445678899999999999999999
Q ss_pred hHHHHHHHHHHhhhHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------CCHHHHHHHHHHHHH
Q 001041 921 EEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGK---------ATFSDVFKVFFSLTM 991 (1178)
Q Consensus 921 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~---------~t~g~l~~~~~~~~~ 991 (1178)
++++.+++.+..+...+.................+ +..+++++.+...+..+. .++|.+++ +...
T Consensus 1111 ~~~f~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~---~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls---~~~~ 1184 (1622)
T PLN03130 1111 YDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRLET---LGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLS---YALN 1184 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHcccccccchhhhHHHHHHHH---HHHH
Confidence 99888877777766655433222111111111111 111122222333333321 23344333 4445
Q ss_pred HHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCCCCCCC--CCCcccCccccEEEeeeEEeCCCCCCccccccceEEee
Q 001041 992 TAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDE--SGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIR 1069 (1178)
Q Consensus 992 ~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~--~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~ 1069 (1178)
+..++..+.......+..+.+++|+.++++.++|.+...+ .++..++.+|.|+|+||+|+|+++ .++||+||||+|+
T Consensus 1185 ~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~ 1263 (1622)
T PLN03130 1185 ITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEIS 1263 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEc
Confidence 5556666666677889999999999999987766432111 111123457899999999999643 3479999999999
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCH
Q 001041 1070 AGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATE 1149 (1178)
Q Consensus 1070 ~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asd 1149 (1178)
|||+||||||||||||||+++|+|||+|++|+|+|||+||+++++++||++|++|||||+||+|||||||+++. ++||
T Consensus 1264 ~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~--~~td 1341 (1622)
T PLN03130 1264 PSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN--EHND 1341 (1622)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC--CCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999984 6899
Q ss_pred HHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1150 AEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1150 eei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
||+|+||+.|+++|||.+||+||||+|+
T Consensus 1342 eei~~Al~~a~l~~~I~~lp~GLdt~Vg 1369 (1622)
T PLN03130 1342 ADLWESLERAHLKDVIRRNSLGLDAEVS 1369 (1622)
T ss_pred HHHHHHHHHcCcHHHHHhCccccCcccc
Confidence 9999999999999999999999999985
No 5
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.9e-129 Score=1296.30 Aligned_cols=984 Identities=18% Similarity=0.225 Sum_probs=716.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001041 128 MITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLT 207 (1178)
Q Consensus 128 ~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 207 (1178)
...+.++...++..+++++++.+...+++. ++|+++|++++|++.+++... .+..++...+.++..+++ +.+.+.
T Consensus 366 ~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~-~~G~i~n~ls~Dv~~i~~~~~-~l~~l~~~p~~ii~~~~~---l~~~lg 440 (1495)
T PLN03232 366 GRVGFRLRSTLVAAIFHKSLRLTHEARKNF-ASGKVTNMITTDANALQQIAE-QLHGLWSAPFRIIVSMVL---LYQQLG 440 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCCC-CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH---HHHHHh
Confidence 345566666666788999999999888764 899999999999999999753 333333332222222221 112222
Q ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 208 LVML---SSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEG 284 (1178)
Q Consensus 208 l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 284 (1178)
+..+ +++.+++++..++.+..++..++.++..+++.+.++|.++|+++||+|+||+.+.+++.+.++++.+...+..
T Consensus 441 ~~~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~ 520 (1495)
T PLN03232 441 VASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQ 520 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 1222233345566777888888888999999999999999999999999999999999999988887777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 001041 285 LAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRK 364 (1178)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~ 364 (1178)
...++...+.... ...+..+++|.+++..+.++++.+++++.++.....++..++..+..+..+..+.+|+.++++.+
T Consensus 521 ~~~~~~~~~~~~~--~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~ 598 (1495)
T PLN03232 521 LLSAFNSFILNSI--PVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSE 598 (1495)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 5555433222111 11223456677777788899999999887777777788888888899999999999999999765
Q ss_pred CCCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEE
Q 001041 365 PEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 444 (1178)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~ 444 (1178)
++..... ....+..+.|+++|++|+|+.++++++|+|+||+|++||+++||||||||||||+++|+|+++|.+|.+.
T Consensus 599 ~~~~~~~---~~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~ 675 (1495)
T PLN03232 599 ERILAQN---PPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV 675 (1495)
T ss_pred ccccccc---CCcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE
Confidence 4322111 1111123469999999999864456899999999999999999999999999999999999999998763
Q ss_pred ECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCC
Q 001041 445 IDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLS 524 (1178)
Q Consensus 445 i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lS 524 (1178)
.+|++|+||||+||+|++||||||.||.+ +++++++++++.|+++++++.+|+||+|.|||+|.+||
T Consensus 676 ------------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~-~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LS 742 (1495)
T PLN03232 676 ------------VIRGSVAYVPQVSWIFNATVRENILFGSD-FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNIS 742 (1495)
T ss_pred ------------EecCcEEEEcCccccccccHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccC
Confidence 24669999999999999999999999986 78999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHH-HHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecC
Q 001041 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVV-QEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603 (1178)
Q Consensus 525 gGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i-~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~ 603 (1178)
|||||||+||||+|++|+||||||||||||+++++.+ .++++...+++|+|+||||++.++.||+|++|++|+|++.|+
T Consensus 743 GGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt 822 (1495)
T PLN03232 743 GGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGT 822 (1495)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecC
Confidence 9999999999999999999999999999999998876 456777778999999999999999999999999999999999
Q ss_pred hhHHhcCCCchHHHHHHHHhhcccchhccccccccchhhhhhhcccccccccccccCCCCCCCCCCcccccccCCCCCCC
Q 001041 604 HSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQF 683 (1178)
Q Consensus 604 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (1178)
|+|++++ ++.|.++.+.+....+..+ .. +..+ ..... ....... .. . .. .. ..
T Consensus 823 ~~eL~~~-~~~~~~l~~~~~~~~~~~~-~~--~~~~----~~~~~------~~~~~~~-~~--~-~~-~~--------~~ 875 (1495)
T PLN03232 823 FAELSKS-GSLFKKLMENAGKMDATQE-VN--TNDE----NILKL------GPTVTID-VS--E-RN-LG--------ST 875 (1495)
T ss_pred HHHHHhc-chhHHHHHHhccccccccc-cc--cccc----ccccc------ccccccc-cc--c-cc-cc--------cc
Confidence 9999976 6778887764432111100 00 0000 00000 0000000 00 0 00 00 00
Q ss_pred CcccCCCCCCCCCCCCCCCCcchhHhhhhhcCCh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhH
Q 001041 684 ADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPE--IPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSR 761 (1178)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 (1178)
.. ...........++...+...++.+.+|.+.. ++.+.+.+++.++..+......+|++.|.+.... ......
T Consensus 876 ~~-~~~~~~~~~~~e~~~~g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~----~~~~~~ 950 (1495)
T PLN03232 876 KQ-GKRGRSVLVKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQSTP----KSYSPG 950 (1495)
T ss_pred cc-cccchhhhhhHHHHhcCcccHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC----CCCCcc
Confidence 00 0000000000011111223344444443332 2222222223333333333344555555432110 011234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHH
Q 001041 762 FWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDAL 841 (1178)
Q Consensus 762 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l 841 (1178)
.|+.+|++++++..++.+++.+++...+.++++++|++++++++++|++||+ ++++|+|+||+++|++.++..++..+
T Consensus 951 ~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~--~~~~G~ilnr~s~Di~~id~~l~~~~ 1028 (1495)
T PLN03232 951 FYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFH--TNPTGRVINRFSKDIGDIDRNVANLM 1028 (1495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeC--cCCchHHHHHhHhhHHHHHHHHHHHH
Confidence 6788888888888899999999999999999999999999999999999999 59999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHc
Q 001041 842 ARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYT---QMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASF 918 (1178)
Q Consensus 842 ~~~~~~~~~~i~~ii~~~~~~~~l~l~~l~~~pl~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf 918 (1178)
..++..++.++++++++++++|...+ +++|+.+++... ..+..+...+......+...+++.|+++|++|||+|
T Consensus 1029 ~~~~~~~~~~i~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf 1105 (1495)
T PLN03232 1029 NMFMNQLWQLLSTFALIGTVSTISLW---AIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAY 1105 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcC
Confidence 99999999888888888777754332 223333322222 222223333344445567789999999999999999
Q ss_pred cchHHHHHHHHHHhhhHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh-cCCC----CHHHHH-HHHHHHHHH
Q 001041 919 CAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVE-DGKA----TFSDVF-KVFFSLTMT 992 (1178)
Q Consensus 919 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~-~g~~----t~g~l~-~~~~~~~~~ 992 (1178)
++++++.+++.+..+...+......... .+..... ..+..+++++.+...+. .|.+ .++.++ .++.+...+
T Consensus 1106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~wl~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~ 1182 (1495)
T PLN03232 1106 KAYDRMAKINGKSMDNNIRFTLANTSSN-RWLTIRL--ETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNI 1182 (1495)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH--HHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHH
Confidence 9999888888877776665544322211 1111111 11111222222333333 2322 112222 345566667
Q ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCCCCCCCC--CCcccCccccEEEeeeEEeCCCCCCccccccceEEeeC
Q 001041 993 AIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDES--GTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRA 1070 (1178)
Q Consensus 993 ~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~--~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~ 1070 (1178)
..++..+......++.++.+++|+.++++.++|.+..... ++..++.+|+|+|+||+|+|+++ .++||+||||+|+|
T Consensus 1183 ~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~ 1261 (1495)
T PLN03232 1183 TTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSP 1261 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcC
Confidence 7788888888899999999999999999877664321111 11123457899999999999643 34799999999999
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHH
Q 001041 1071 GKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEA 1150 (1178)
Q Consensus 1071 Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asde 1150 (1178)
|||||||||||||||||+++|+|+|+|++|+|+|||+||+++++++||++|++|||||+||+|||||||++++ ++|||
T Consensus 1262 GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~--~~sde 1339 (1495)
T PLN03232 1262 SEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS--EHNDA 1339 (1495)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC--CCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999974 69999
Q ss_pred HHHHHHHHcCchHHHhhcccccccccc
Q 001041 1151 EIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1151 ei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
|+|+|++.|+++|||++||+||||+|+
T Consensus 1340 ei~~al~~a~l~~~I~~lp~GLdt~v~ 1366 (1495)
T PLN03232 1340 DLWEALERAHIKDVIDRNPFGLDAEVS 1366 (1495)
T ss_pred HHHHHHHHcCCHHHHHhCcCCCCceec
Confidence 999999999999999999999999985
No 6
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.7e-125 Score=1260.22 Aligned_cols=1020 Identities=17% Similarity=0.196 Sum_probs=743.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHH
Q 001041 127 WMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAF-IKGWL 205 (1178)
Q Consensus 127 ~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 205 (1178)
....+.++...++..+++++++.+...+++. ++|+++|++++|++++.+.... +..++...+.++..+++++ ..+|
T Consensus 382 ~~~~~~~ir~~L~~~iy~K~L~l~~~~~~~~-~~G~i~nl~s~D~~~i~~~~~~-~~~~~~~~~~i~~~~~ll~~~~g~- 458 (1522)
T TIGR00957 382 CFVSGMRIKTAVMGAVYRKALVITNSARKSS-TVGEIVNLMSVDAQRFMDLATY-INMIWSAPLQVILALYFLWLNLGP- 458 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCChhhcCCC-CHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhH-
Confidence 4445677777788889999999999988864 8999999999999999886532 3333333333332222222 2333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 206 LTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGL 285 (1178)
Q Consensus 206 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 285 (1178)
.+++.++++++++++..++.+..++..++.++..+++.+.+.|.++|+++||+|+||+.+.+++.+.+.++.+...+...
T Consensus 459 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~ 538 (1522)
T TIGR00957 459 SVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAY 538 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445556666667777888888888899999999999999999999999999999999999999888777665555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 001041 286 AAGIGLGMVMLIVFCSYALSVWYGGKLIL--EEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINR 363 (1178)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~ 363 (1178)
...+.......... .+..+.++.+.+. .+.++.+.+++.+.++.....++..+...+..+..+..+..|+.++++.
T Consensus 539 ~~~~~~~~~~~~~~--~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~ 616 (1522)
T TIGR00957 539 LHAVGTFTWVCTPF--LVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSH 616 (1522)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 54443222111111 1112223334443 2457788888776555556678888888899999999999999999976
Q ss_pred CCCCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcE
Q 001041 364 KPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443 (1178)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i 443 (1178)
+++.+.............+.|+++|++|+|+.+ ++++|+|+||++++||+++|+||+|||||||+++|+|+++|.+|+|
T Consensus 617 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i 695 (1522)
T TIGR00957 617 EELEPDSIERRTIKPGEGNSITVHNATFTWARD-LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 695 (1522)
T ss_pred cccccccccccccCCCCCCcEEEEEeEEEcCCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEE
Confidence 543221100001001112369999999999743 3579999999999999999999999999999999999999999999
Q ss_pred EECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCC
Q 001041 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQL 523 (1178)
Q Consensus 444 ~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~l 523 (1178)
.++| +|+||||+||+|++||||||.||.+ .++++++++++.|++.+++..+|+|++|.+|++|.+|
T Consensus 696 ~~~g-------------~i~yv~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~L 761 (1522)
T TIGR00957 696 HMKG-------------SVAYVPQQAWIQNDSLRENILFGKA-LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNL 761 (1522)
T ss_pred EECC-------------EEEEEcCCccccCCcHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCC
Confidence 9998 6999999999999999999999876 5678889999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHH---HHhcCCeEEEEecCcchhhccCEEEEEeCCEEEE
Q 001041 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALD---RIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVE 600 (1178)
Q Consensus 524 SgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~---~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~ 600 (1178)
||||||||+||||+|++|+|+|||||||+||+++++.+.+.+. +..+++|+|+|||+++.+..||+|++|++|+|++
T Consensus 762 SGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~ 841 (1522)
T TIGR00957 762 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISE 841 (1522)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEe
Confidence 9999999999999999999999999999999999999988875 3457899999999999999999999999999999
Q ss_pred ecChhHHhcCCCchHHHHHHHHhhcccchhcccc-ccccchhhhhhhcccccccccccccCCCCCCCCCCcccccccCCC
Q 001041 601 KGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDG-QRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLP 679 (1178)
Q Consensus 601 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (1178)
.|+++++.++ ++.|.++...+..+.+.+...+. .............................................
T Consensus 842 ~g~~~~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 920 (1522)
T TIGR00957 842 MGSYQELLQR-DGAFAEFLRTYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQSRH 920 (1522)
T ss_pred eCCHHHHHhc-chhHHHHHHhhccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccc
Confidence 9999999876 56777776543221111000000 000000000000000000000000000000000000000000000
Q ss_pred -CCCCCcccCCCCCCCCC--CCC-CCCCcchhHhhhhhcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 001041 680 -SGQFADTALGEPAGPSQ--PTE-EVAPEVPTRRLAYLNK-PEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPH 754 (1178)
Q Consensus 680 -~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 754 (1178)
.+............... .++ ...+...+..+++|.+ .++...++.+++.++..++....++|++.|.+.......
T Consensus 921 ~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~ 1000 (1522)
T TIGR00957 921 HGSSAELQKAEAKEETWKLMEADKAQTGQVELSVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGT 1000 (1522)
T ss_pred ccccccccccccccchhhhHHHHHHhcCcccHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC
Confidence 00000000000000000 000 1111222333333322 223333333333344444555666777777764321100
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHH
Q 001041 755 ELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVR 834 (1178)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~ 834 (1178)
......|..+|++++++..++.++..++....+.++.+++|++++++++++|++||| ++++|+|+|||++|++.+|
T Consensus 1001 --~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~--~~~~G~ilnR~s~Di~~id 1076 (1522)
T TIGR00957 1001 --QNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFE--RTPSGNLVNRFSKELDTVD 1076 (1522)
T ss_pred --CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhc--cCChHHHHHHHHHHHHHHH
Confidence 111234566788888888888888889999999999999999999999999999999 5999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHH
Q 001041 835 ALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRT 914 (1178)
Q Consensus 835 ~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~t 914 (1178)
..++..+..++..++.+++.++++++.+|++++++++++++++++..++.+..+...+......+...+++.|+++|++|
T Consensus 1077 ~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~t 1156 (1522)
T TIGR00957 1077 SMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSV 1156 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHH
Confidence 99999999999999999999999998888877666555555544444444444444444555667788999999999999
Q ss_pred HHHccchHHHHHHHHHHhhhHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHH
Q 001041 915 VASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLV-EDGKATFSDVFKVFFSLTMTA 993 (1178)
Q Consensus 915 Iraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~-~~g~~t~g~l~~~~~~~~~~~ 993 (1178)
||+|++|+++.+++.+..+...+..+..............++.. +++++.+...+ ..|.++.|.+..++.+...+.
T Consensus 1157 Iraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~ 1233 (1522)
T TIGR00957 1157 IRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGN---CIVLFAALFAVISRHSLSAGLVGLSVSYSLQVT 1233 (1522)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999998888766544443333333222222 22333444444 357899999999999999999
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCCCCCCCC--CCcccCccccEEEeeeEEeCCCCCCccccccceEEeeCC
Q 001041 994 IGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDES--GTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAG 1071 (1178)
Q Consensus 994 ~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~--~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~G 1071 (1178)
.++..+......++.++.+++|+.++++.+++.+...+. ++..++.+|+|+|+||+|+|+++ .++||+||||+|+||
T Consensus 1234 ~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~vL~~is~~I~~G 1312 (1522)
T TIGR00957 1234 FYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYRED-LDLVLRHINVTIHGG 1312 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CcccccceeEEEcCC
Confidence 999999999999999999999999999877654211111 11123467899999999999754 246999999999999
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHH
Q 001041 1072 KTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAE 1151 (1178)
Q Consensus 1072 e~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdee 1151 (1178)
||||||||||||||||+++|+|||||++|+|+|||+||+++++++||++|++|||||+||+|||||||++. +++||||
T Consensus 1313 ekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~--~~~sdee 1390 (1522)
T TIGR00957 1313 EKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPF--SQYSDEE 1390 (1522)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcc--cCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999853 2699999
Q ss_pred HHHHHHHcCchHHHhhcccccccccc
Q 001041 1152 IQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1152 i~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
||+|++.|+++|||.+||+||||+|+
T Consensus 1391 i~~al~~a~l~~~I~~lp~GLdt~v~ 1416 (1522)
T TIGR00957 1391 VWWALELAHLKTFVSALPDKLDHECA 1416 (1522)
T ss_pred HHHHHHHcCcHHHHhhCccCCCceec
Confidence 99999999999999999999999985
No 7
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=6.2e-120 Score=1201.81 Aligned_cols=1060 Identities=17% Similarity=0.179 Sum_probs=745.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 64 GSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYL 143 (1178)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~ 143 (1178)
.+++.++..++....|++++.+++.+... +. .......++..+++..++.+++...+.+.....+.++...+...++
T Consensus 249 ~~~~~l~~~~~~l~~P~ll~~~v~~l~~~-~~--~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~~r~~L~~~if 325 (1560)
T PTZ00243 249 QIPFKLLSDVCTLTLPVLLKYFVKFLDAD-NA--TWGRGLGLVLTLFLTQLIQSVCLHRFYYISIRCGLQYRSALNALIF 325 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-Cc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555677777764322 11 1111111111222222233333322233333344444455555677
Q ss_pred HHHHhCChhhhhc-cCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 001041 144 KTILRQDVAFFDN-ETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGG 222 (1178)
Q Consensus 144 ~~il~~~~~~f~~-~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~ 222 (1178)
+++++.+...+.. ..++|+++|++++|++.+.+++......+...+..+++.+++...++| .+++.++++++++++..
T Consensus 326 ~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~~~l~~~Pl~li~~~~lL~~~lG~-~al~gv~vl~v~~pl~~ 404 (1560)
T PTZ00243 326 EKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCMYLWSSPMVLLLSILLLSRLVGW-CALMAVAVLLVTLPLNG 404 (1560)
T ss_pred HHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHH
Confidence 7777777655531 136899999999999999999866554444444444444555555566 56666667777777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 223 VMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSY 302 (1178)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (1178)
++.+...+.+++..+..+++.+.++|.++|||+||+++||+.+.+++.+.++++.+..++......+...+......+.
T Consensus 405 ~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~~~~~~~~~~~~~~~p~l~- 483 (1560)
T PTZ00243 405 AIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQLARVATSFVNNATPTLM- 483 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 8888888888899999999999999999999999999999999999999999988887776666655443332222222
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC----cC-C------
Q 001041 303 ALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEID----AY-D------ 371 (1178)
Q Consensus 303 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~----~~-~------ 371 (1178)
..+.++.+.+..+.++++.+|+.+.++.....++..++..+..+.++.++..|+.+++..++... +. +
T Consensus 484 -~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~ 562 (1560)
T PTZ00243 484 -IAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDNATCSTVQDMEEYWREQR 562 (1560)
T ss_pred -HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccchhhccccc
Confidence 22234556667788999999998877777778888888889999999999999999997643100 00 0
Q ss_pred ---C--C--------------C---c------------------------ccCCCcccEEEEeEEEECCCC---------
Q 001041 372 ---T--K--------------G---K------------------------ILDDIRGDIELRDVYFSYPAR--------- 396 (1178)
Q Consensus 372 ---~--~--------------~---~------------------------~~~~~~~~i~~~~~~~~y~~~--------- 396 (1178)
. . + + ......+.+.++|++|.|+..
T Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (1560)
T PTZ00243 563 EHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVEDTDYGSPSSASRHIVEGG 642 (1560)
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccccccccccccccccccccccc
Confidence 0 0 0 0 000011346777877765410
Q ss_pred ----------------------------CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCe
Q 001041 397 ----------------------------PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGI 448 (1178)
Q Consensus 397 ----------------------------~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~ 448 (1178)
.++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~- 721 (1560)
T PTZ00243 643 TGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAER- 721 (1560)
T ss_pred ccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-
Confidence 124589999999999999999999999999999999999999999998753
Q ss_pred ecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 001041 449 NLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1178)
Q Consensus 449 ~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqk 528 (1178)
+|+||||+||+|++||+|||.|+.+ .+.+++.++++.|+++++++.+|+|++|.+|++|.+||||||
T Consensus 722 ------------~i~yv~Q~~~l~~~Tv~enI~~~~~-~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQk 788 (1560)
T PTZ00243 722 ------------SIAYVPQQAWIMNATVRGNILFFDE-EDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQK 788 (1560)
T ss_pred ------------eEEEEeCCCccCCCcHHHHHHcCCh-hhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHH
Confidence 7999999999999999999999865 456778889999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHH-HHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHH
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQ-EALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~-~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 607 (1178)
|||+||||+|++|+|||||||||+||+++.+.+. +++....+++|+|+|||+++.+..||+|++|++|++++.|+++++
T Consensus 789 qRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~l 868 (1560)
T PTZ00243 789 ARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADF 868 (1560)
T ss_pred HHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999877665 455556678999999999999999999999999999999999999
Q ss_pred hcCCCchHHHHHHHHhhcccchhccccccccchhhhhhhcccccccccccccCCCCCCCCCCcccccccCCCCCCCCccc
Q 001041 608 VEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQFADTA 687 (1178)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1178)
.+. +.|..+........+..+.....+... .+.. .. . ........ .. +. ...........
T Consensus 869 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~--~--~~~~~~~~-~~--------~~--~~~~~~~~~~~ 928 (1560)
T PTZ00243 869 MRT--SLYATLAAELKENKDSKEGDADAEVAE--VDAA-PG--G--AVDHEPPV-AK--------QE--GNAEGGDGAAL 928 (1560)
T ss_pred HhC--hHHHHHHHhhccccccccccccccccc--cccc-cc--c--cccccccc-cc--------cc--ccccccccccc
Confidence 874 456666543211111000000000000 0000 00 0 00000000 00 00 00000000000
Q ss_pred CCCCCCCCCCCCCCCCcchhHhhhhhcCCh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHH
Q 001041 688 LGEPAGPSQPTEEVAPEVPTRRLAYLNKPE--IPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWAL 765 (1178)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 765 (1178)
..........+++..+...++.+..|.+.. +...+..+++.++..++.....+|++.|.+.... .....|+.
T Consensus 929 ~~~~~~l~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~~~------~~~~~~l~ 1002 (1560)
T PTZ00243 929 DAAAGRLMTREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRSFK------LSAATYLY 1002 (1560)
T ss_pred ccccchhhhHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC------CCcccHHH
Confidence 000000000001111223343333333221 1111111122222223333344455554432111 11234566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHH
Q 001041 766 IYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIV 845 (1178)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~ 845 (1178)
+|+++.++..++.+++.+.....+.+..+++|.+++++++++|++||| ++++|+|+|||++|++.++..++..+..++
T Consensus 1003 ~y~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd--~~~~G~ilnR~s~Di~~id~~l~~~l~~~~ 1080 (1560)
T PTZ00243 1003 VYLGIVLLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFD--TTPLGRILNRFSRDIDILDNTLPMSYLYLL 1080 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhcc--CCCccHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 666666666666666777777778888899999999999999999999 599999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchH
Q 001041 846 QNISTAAAGLIIAFTASWQLALIILVMLPLIGVS---GYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEE 922 (1178)
Q Consensus 846 ~~~~~~i~~ii~~~~~~~~l~l~~l~~~pl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~ 922 (1178)
..++.+++.++++++.+|.+.++ ++|+.+++ ..++.+..+...+......+.+.+++.|+++|+++||+|++++
T Consensus 1081 ~~~~~~i~~li~~~~~~p~~~~~---~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~ 1157 (1560)
T PTZ00243 1081 QCLFSICSSILVTSASQPFVLVA---LVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAH 1157 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHH
Confidence 99999999999999888854433 33333332 2223333333333334455667899999999999999999999
Q ss_pred HHHHHHHHHhhhHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH--HHhcCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 001041 923 KVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGAR--LVEDGKATFSDVFKVFFSLTMTAIGISQSS 1000 (1178)
Q Consensus 923 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~ 1000 (1178)
++.++|.+..+.+.+..+..............++..+..+++.+++.. +...+.+++|.+..++.+...+..++..+.
T Consensus 1158 ~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~ 1237 (1560)
T PTZ00243 1158 LVMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLV 1237 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888777665554444444444444443333333333 333455788988888888889999999999
Q ss_pred hchhhHHHHHHHHHHHHHHhcCCCCCC-CC-------------------------CCCCC---cccCccccEEEeeeEEe
Q 001041 1001 SFSSDSNKAKSAAASIFAIIDRESKID-PS-------------------------DESGT---ILEDVKGEIELHHVSFK 1051 (1178)
Q Consensus 1001 ~~~~~~~~~~~s~~ri~~~l~~~~~~~-~~-------------------------~~~~~---~~~~~~g~I~f~nVsf~ 1051 (1178)
.....++.++.+++|+.++++.+++.+ +. +..++ +.++..|.|+|+||+|+
T Consensus 1238 ~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~ 1317 (1560)
T PTZ00243 1238 RQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMR 1317 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEE
Confidence 999999999999999999996433211 00 00000 11224689999999999
Q ss_pred CCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccccccccccc
Q 001041 1052 YPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLF 1131 (1178)
Q Consensus 1052 Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF 1131 (1178)
|+++ .++||+||||+|+||||||||||||||||||+++|+|+|+|++|+|+|||+||+++++++||++|++|||||+||
T Consensus 1318 Y~~~-~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF 1396 (1560)
T PTZ00243 1318 YREG-LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLF 1396 (1560)
T ss_pred eCCC-CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccc
Confidence 9753 346999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1132 NDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1132 ~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
+|||||||+++ +++||+|||+||++|+++|||.+||+||||+|+
T Consensus 1397 ~gTIreNIdp~--~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vg 1440 (1560)
T PTZ00243 1397 DGTVRQNVDPF--LEASSAEVWAALELVGLRERVASESEGIDSRVL 1440 (1560)
T ss_pred cccHHHHhCcc--cCCCHHHHHHHHHHCCChHHHhhCccccccccc
Confidence 99999999875 379999999999999999999999999999985
No 8
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=4.3e-117 Score=1175.37 Aligned_cols=1011 Identities=17% Similarity=0.202 Sum_probs=705.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001041 130 TGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLV 209 (1178)
Q Consensus 130 ~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~ 209 (1178)
.+.++-..+...+++++++.+...+++ .++|+++|++++|++++.+.+......+...+..+++.+++...++| .+++
T Consensus 149 ~~~~~r~~L~~~iy~K~L~l~~~~~~~-~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~pi~i~~~~~lL~~~~G~-~~l~ 226 (1490)
T TIGR01271 149 LGMQMRIALFSLIYKKTLKLSSRVLDK-ISTGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLEV-NGFC 226 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHhcC-CCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 344444444445589999999888886 48999999999999999998766544444334344444444455555 5566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 210 MLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGI 289 (1178)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (1178)
.++++++++++..++.+.+.+.+++.++..+++.+.++|.++||++||+|+||+.+.+++.+.+.++.+...+......+
T Consensus 227 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~ 306 (1490)
T TIGR01271 227 GLGFLILLALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYF 306 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777788888888999999999999999999999999999999999999999999999999999888877766655433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 001041 290 GLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLG-EASPCLSAFGAGQAAAFKMFETINRKPEID 368 (1178)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 368 (1178)
......... ..+..+.++.+.+. +..+.+.+|+++.++.....++. .++..+..+..+.++..|+.+++..++...
T Consensus 307 ~~~~~~~~~--~~~~~~~f~~y~~~-~~~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~ 383 (1490)
T TIGR01271 307 YSSAFFFSG--FFVVFLSVVPYALI-KGIILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKT 383 (1490)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 332222111 12223334444443 33577777777655555545553 455667888899999999999997644311
Q ss_pred cCCCCCcccCCCcccEEEEeEEEECCCCC-------------------------------CCccccceeEEEeCCCEEEE
Q 001041 369 AYDTKGKILDDIRGDIELRDVYFSYPARP-------------------------------NEQIFSGFSISISSGTTAAL 417 (1178)
Q Consensus 369 ~~~~~~~~~~~~~~~i~~~~~~~~y~~~~-------------------------------~~~~l~~i~l~i~~g~~~~i 417 (1178)
.. . ......++++|++|.|+... .+++|+|+||+|++||+++|
T Consensus 384 -~~---~--~~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I 457 (1490)
T TIGR01271 384 -LE---Y--NLTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAV 457 (1490)
T ss_pred -cc---c--cCCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEE
Confidence 11 0 01123589999999995310 13689999999999999999
Q ss_pred EcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHH
Q 001041 418 VGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATE 497 (1178)
Q Consensus 418 vG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~ 497 (1178)
+||+|||||||+++|+|+++|.+|+|.++| +|+||+|+||+|++||+|||.||.+ ++++++.++++
T Consensus 458 ~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~ 523 (1490)
T TIGR01271 458 AGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGLS-YDEYRYTSVIK 523 (1490)
T ss_pred ECCCCCCHHHHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhccc-cchHHHHHHHH
Confidence 999999999999999999999999999998 6999999999999999999999865 56677888899
Q ss_pred HhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHH-HHHHHhcCCeEEE
Q 001041 498 LANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE-ALDRIMVNRTTVI 576 (1178)
Q Consensus 498 ~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~-~i~~~~~~~t~i~ 576 (1178)
.|++.+++..+|+|++|.+|++|.+|||||||||+||||+|++|+|||||||||+||+++++.+.+ ++.++.+++|+|+
T Consensus 524 ~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvil 603 (1490)
T TIGR01271 524 ACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRIL 603 (1490)
T ss_pred HHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEE
Confidence 999999999999999999999999999999999999999999999999999999999999998886 5777778999999
Q ss_pred EecCcchhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHHHhhccc----c------h-------h-cc-----c
Q 001041 577 VAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKE----S------E-------Q-TI-----D 633 (1178)
Q Consensus 577 itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~----~------~-------~-~~-----~ 633 (1178)
|||+++.+..||+|++|++|++++.|+++++.+. ++.|.......+...+ . + + .. +
T Consensus 604 vtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1490)
T TIGR01271 604 VTSKLEHLKKADKILLLHEGVCYFYGTFSELQAK-RPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGP 682 (1490)
T ss_pred EeCChHHHHhCCEEEEEECCEEEEEcCHHHHHhc-ChHHHHHHhcccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999875 4556555421100000 0 0 0 00 0
Q ss_pred ccccc---chhhh--hhhc-c-------------------------cccccccccc-------cCCCCCC-CCCCccc--
Q 001041 634 GQRKS---EISME--SLRH-S-------------------------SHRMSLRRSI-------SRGSSIG-NSSRHSI-- 672 (1178)
Q Consensus 634 ~~~~~---~~~~~--~~~~-~-------------------------~~~~~~~~~~-------~~~~~~~-~~~~~~~-- 672 (1178)
+.... .+..+ ..+. . .......+.. ...+..+ ...+...
T Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 762 (1490)
T TIGR01271 683 ETIKQSFKQPPPEFAEKRKQSIILNPIASARKFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYH 762 (1490)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccchhcccccccccccccccccccccccccccc
Confidence 00000 00000 0000 0 0000000000 0000000 0000000
Q ss_pred ---cc--ccCC-----CCCC--------------------CC------ccc---CC-CCC------CC---CC-----CC
Q 001041 673 ---SV--SFGL-----PSGQ--------------------FA------DTA---LG-EPA------GP---SQ-----PT 698 (1178)
Q Consensus 673 ---~~--~~~~-----~~~~--------------------~~------~~~---~~-~~~------~~---~~-----~~ 698 (1178)
+. .... ..+. .+ ..+ .. ... +. .. .+
T Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 842 (1490)
T TIGR01271 763 HGLQHQAQRRQSVLQLMTHSNRGENRREQLQTSFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFAD 842 (1490)
T ss_pred cccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhH
Confidence 00 0000 0000 00 000 00 000 00 00 00
Q ss_pred -CC-CCCcchhHhhhhhcCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--c---CCCch-h---------hhh
Q 001041 699 -EE-VAPEVPTRRLAYLNKP--EIPVILAGTIAAMANGVILPIYGLLISSVIETF--F---KPPHE-L---------KKD 759 (1178)
Q Consensus 699 -~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~-~---------~~~ 759 (1178)
++ ..+...++.+++|.+. .+..+++.+++.++..++..+..+|+..|.... + ..... . ...
T Consensus 843 ~e~~~~g~v~~~vY~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 922 (1490)
T TIGR01271 843 ERENVFETTTWNTYLRYITTNRNLVFVLIFCLVIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPT 922 (1490)
T ss_pred HHHhhcCcccHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhHHHHhcccccccccccccccCCCccccccccccCc
Confidence 00 0112233333333322 122222222333333344444455555443210 0 00000 0 001
Q ss_pred hHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHH
Q 001041 760 SRFW-ALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVG 838 (1178)
Q Consensus 760 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~ 838 (1178)
..+| +.+|++++++..++.+++.+++...+.++++++|.+++++++++|++||+ ++++|+++|||++|++.+++.++
T Consensus 923 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~--~~~~G~ilnRfs~Di~~id~~l~ 1000 (1490)
T TIGR01271 923 SAYYIFYIYVGTADSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLN--TMKAGRILNRFTKDMAIIDDMLP 1000 (1490)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhC--CCChhHHHHHHHHHHHHHHHHHH
Confidence 1122 34444555555667778888899999999999999999999999999999 59999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHc
Q 001041 839 DALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASF 918 (1178)
Q Consensus 839 ~~l~~~~~~~~~~i~~ii~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf 918 (1178)
..+..++..++.+++.++++++++|++++++++++.+++++..++.+..+...+......+...+++.|+++|+.|||+|
T Consensus 1001 ~~~~~~~~~~~~~i~~l~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf 1080 (1490)
T TIGR01271 1001 LTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAF 1080 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHh
Confidence 99999999999999999999999998765443333333322233333333333344445566789999999999999999
Q ss_pred cchHHHHHHHHHHhhhHHHhhhHHHHHHhhHHHHHHHHHHHHH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 001041 919 CAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFY--AASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGI 996 (1178)
Q Consensus 919 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l 996 (1178)
++++++.++|.+..+...+..+..............++..+.. ++.++++.. .++.|.+..++.+...+..++
T Consensus 1081 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~~~~-----~~~~g~~g~~l~~~~~l~~~l 1155 (1490)
T TIGR01271 1081 GRQSYFETLFHKALNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGTN-----QDGEGEVGIILTLAMNILSTL 1155 (1490)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCccHHHHHHHHHHHHHHHH
Confidence 9999999999999987665544332222222111111111111 112222222 233444444455666667777
Q ss_pred HHHhhchhhHHHHHHHHHHHHHHhcCCCCCCCCCCC----------------CCcccCccccEEEeeeEEeCCCCCCccc
Q 001041 997 SQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDES----------------GTILEDVKGEIELHHVSFKYPSRPDVQV 1060 (1178)
Q Consensus 997 ~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~----------------~~~~~~~~g~I~f~nVsf~Y~~~~~~~v 1060 (1178)
..+......++..+.+++|+.++++.+++.....+. .++.+|..|.|+|+||+|+|+++ .++|
T Consensus 1156 ~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~v 1234 (1490)
T TIGR01271 1156 QWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAV 1234 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-Ccce
Confidence 888888888999999999999999876653211100 01123456899999999999753 4579
Q ss_pred cccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccccccccccccccHHHHHh
Q 001041 1061 FRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIA 1140 (1178)
Q Consensus 1061 L~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~ 1140 (1178)
|+||||+|+||||||||||||||||||+++|+|+|+ ++|+|+|||+||+++++++||++|++|||||+||+||||+||+
T Consensus 1235 L~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLd 1313 (1490)
T TIGR01271 1235 LQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLD 1313 (1490)
T ss_pred eeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhC
Confidence 999999999999999999999999999999999998 7999999999999999999999999999999999999999998
Q ss_pred cCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1141 YGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1141 ~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
+. .+++|+|+|+|++.++++++|.++|+||||+|+
T Consensus 1314 p~--~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~ 1348 (1490)
T TIGR01271 1314 PY--EQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLV 1348 (1490)
T ss_pred cc--cCCCHHHHHHHHHHCCCHHHHHhCccccccccc
Confidence 75 368999999999999999999999999999985
No 9
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-100 Score=884.38 Aligned_cols=576 Identities=39% Similarity=0.644 Sum_probs=530.5
Q ss_pred chHHHHhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 44 VPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQ 123 (1178)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 123 (1178)
..+++++.|+++. +..+..+.++.++......+.|++.|+++|.+...... .......++.+..+.++.+++.+++
T Consensus 133 ~~~~rl~~l~~~~-~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~---~~~~~~~~~~l~~l~~~~a~~~~~r 208 (716)
T KOG0058|consen 133 TLLKRLLGLLKPE-WKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDS---ADALKRACTILLGLFLIGALANAIR 208 (716)
T ss_pred hHHHHHHHHhchh-HHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccch---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577899988765 44445555555566666777888999999987651111 2333344556667778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001041 124 VTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKG 203 (1178)
Q Consensus 124 ~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (1178)
.+++.+.+.++..++|.++|+++++++++|||. +.+|++++|++.|++.+.+.++..+...+..+...++.+.++++++
T Consensus 209 ~~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~-nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S 287 (716)
T KOG0058|consen 209 GGLLQYAGERVVARLRTDLFRSLLRQDIAFFDE-NKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLS 287 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc-CCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhh
Confidence 999999999999999999999999999999998 4999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Q 001041 204 WLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQE 283 (1178)
Q Consensus 204 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 283 (1178)
|.++++.++.+|+++++..++++++++..++.|+..++.++...|.+++|||||+|+.|+.+.++|.+..++..+...+.
T Consensus 288 ~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~ 367 (716)
T KOG0058|consen 288 WRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKE 367 (716)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 001041 284 GLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINR 363 (1178)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~ 363 (1178)
....++......+...+..+.++++|++++..+.++.|.+.++++|......++..+...+..+.++..|++|+||+++.
T Consensus 368 a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr 447 (716)
T KOG0058|consen 368 AVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDR 447 (716)
T ss_pred HHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhcc
Confidence 88888888888888888888999999999999999999999999888888888889999999999999999999999999
Q ss_pred CCCCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcE
Q 001041 364 KPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443 (1178)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i 443 (1178)
+|..+... . ..+...+|.|+|+||+|+||.+++.++|+|+||+|+|||.||+|||||+||||++++|+++|+|++|+|
T Consensus 448 ~P~i~~~G-~-~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~I 525 (716)
T KOG0058|consen 448 KPRIPLTG-T-LAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRI 525 (716)
T ss_pred CCCCCCCC-c-cccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeE
Confidence 99876542 1 122257899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCC
Q 001041 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQL 523 (1178)
Q Consensus 444 ~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~l 523 (1178)
.+||+|+++++++++|++||+|.|||.||++||+|||.||.++.++|+++.++++++.++||..+|+||+|.|||+|.+|
T Consensus 526 llDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qL 605 (716)
T KOG0058|consen 526 LLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQL 605 (716)
T ss_pred EECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecC
Q 001041 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603 (1178)
Q Consensus 524 SgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~ 603 (1178)
||||||||||||||++||.||||||+|||||+++|..+++++.+..+++|||+|+||++++++||+|+|+++|+++|.|+
T Consensus 606 SGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~ 685 (716)
T KOG0058|consen 606 SGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGT 685 (716)
T ss_pred cchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhcCCCchHHHHHHHHhhcc
Q 001041 604 HSKLVEDPEGAYSQLIRLQEANK 626 (1178)
Q Consensus 604 ~~~l~~~~~~~~~~~~~~~~~~~ 626 (1178)
|+||++.+++.|+++++.|....
T Consensus 686 h~eLl~~~~gly~~Lv~~q~~~~ 708 (716)
T KOG0058|consen 686 HDELLSKPNGLYAKLVQRQLDSG 708 (716)
T ss_pred HHHHhhCcccHHHHHHHHhcccC
Confidence 99999998899999998775433
No 10
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7.2e-96 Score=892.36 Aligned_cols=579 Identities=46% Similarity=0.781 Sum_probs=542.4
Q ss_pred ccchHHHHhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 42 ESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASF 121 (1178)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 121 (1178)
.+.++++++++.++ +|+.++++++++++.++..|++.+.+++.+..+...+. +........|+++++++|+...++.+
T Consensus 648 ~~~s~~~i~k~~~p-e~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~-~~~~~~~~~~al~f~~l~~~~~i~~~ 725 (1228)
T KOG0055|consen 648 EKVSFWRIFKLNKP-EWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDD-DELKREVRAWALIFLGLGIVSGITNF 725 (1228)
T ss_pred ccccHHHHHHhccc-hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46779999998766 78899999999999999999999999999998764322 22222333478888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 122 LQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFI 201 (1178)
Q Consensus 122 ~~~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (1178)
++++++.+.++++..|+|..+|++++++++.|||....+|.+.+|+++|...++..+.+.+..+++.+..++..+++.|+
T Consensus 726 ~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~ 805 (1228)
T KOG0055|consen 726 LQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFI 805 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999997655699999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Q 001041 202 KGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGV 281 (1178)
Q Consensus 202 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 281 (1178)
++|.+++++++..|++++..+...+.+.....+..+..++..+...|++.+||||++|+.|+++.+.|.+...+..+...
T Consensus 806 ~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~ 885 (1228)
T KOG0055|consen 806 YGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSF 885 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001041 282 QEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETI 361 (1178)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~ 361 (1178)
+..++.++..++.+.+.++.+++.+|+|.+++..+.+++..++.++.........+++.....+.+..+..|+.++++.+
T Consensus 886 ~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~ 965 (1228)
T KOG0055|consen 886 KRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEIL 965 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999888777778888888889999999999999999999
Q ss_pred ccCCCCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCC
Q 001041 362 NRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441 (1178)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G 441 (1178)
+++|++++.++.+...++.+|.|+++||+|+||.||+.++|+|+||+|++||.+||||||||||||++.+|.|+|+|.+|
T Consensus 966 dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G 1045 (1228)
T KOG0055|consen 966 DRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAG 1045 (1228)
T ss_pred cCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCC
Confidence 99987766543333445678999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCC
Q 001041 442 EVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGT 521 (1178)
Q Consensus 442 ~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~ 521 (1178)
.|.|||.|++++++++||++||.|+|+|.||++||||||+||.+..+++++.+|++.+++|+||.+||+||||.|||+|.
T Consensus 1046 ~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~ 1125 (1228)
T KOG0055|consen 1046 KVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGV 1125 (1228)
T ss_pred eEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccC
Confidence 99999999999999999999999999999999999999999966689999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEe
Q 001041 522 QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEK 601 (1178)
Q Consensus 522 ~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~ 601 (1178)
+||||||||||||||++|||+||||||+|||||.++|+.+|+++++...+||+|+|+||++++++||.|.|+++|+|+|+
T Consensus 1126 QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~ 1205 (1228)
T KOG0055|consen 1126 QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQ 1205 (1228)
T ss_pred cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHhcCCCchHHHHHHHHh
Q 001041 602 GTHSKLVEDPEGAYSQLIRLQE 623 (1178)
Q Consensus 602 g~~~~l~~~~~~~~~~~~~~~~ 623 (1178)
|+|++|++. +|.|.+|++.|.
T Consensus 1206 GtH~~L~~~-~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1206 GTHDELLAK-RGIYFRLVQLQS 1226 (1228)
T ss_pred ccHHHHHhC-CCchHHHhhhcc
Confidence 999999995 899999987653
No 11
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=2.2e-85 Score=795.88 Aligned_cols=550 Identities=32% Similarity=0.517 Sum_probs=499.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 61 MIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRG 140 (1178)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 140 (1178)
+++..++..+.+++.|+ +...++|......+. +.+....+.++..++..+++.+++.+...+++.|....+-.
T Consensus 159 v~~~sl~l~i~~l~~p~---~~q~viD~Vl~~~~~----~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~ 231 (709)
T COG2274 159 VLLASLLLQLLALATPL---FSQIVIDKVLPDASR----STLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSG 231 (709)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHhhhccCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33444444455555555 556678877654332 33445566677778888899999999999999999999999
Q ss_pred HHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 001041 141 LYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMS 220 (1178)
Q Consensus 141 ~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~ 220 (1178)
.+++|++++|++||+++ ++|++++|++ |.+.|.+++.......+.++.+++..++++++++|.++++.++.+|++++.
T Consensus 232 ~~~~hll~Lpl~~f~~r-~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~ 309 (709)
T COG2274 232 RFFRHLLRLPLSYFEKR-SVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLI 309 (709)
T ss_pred HHHHHHHcCcHHHccCC-ChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999975 9999999996 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 221 GGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFC 300 (1178)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (1178)
..++.+..++..++..+..++..+.+.|++.|+++||+.+.|.++..+|++...+..+...+.............++...
T Consensus 310 ~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 389 (709)
T COG2274 310 TLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQL 389 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888888888777777777788888
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCCCCcccCCC
Q 001041 301 SYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDI 380 (1178)
Q Consensus 301 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 380 (1178)
+.++.+|+|+.++..+.+|.|.++++.+..-....++..+......+.....+.+|+.+.++.++|.+.... ....+..
T Consensus 390 ~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~-~~~~~~~ 468 (709)
T COG2274 390 SSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKT-LIHLPKL 468 (709)
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccc-ccccccc
Confidence 888999999999999999999998877666666778888899999999999999999999999887443221 2344567
Q ss_pred cccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhc
Q 001041 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRK 460 (1178)
Q Consensus 381 ~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~ 460 (1178)
+|+|+++||+|+|+.+ ++++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+|.+||.|+++++++++|+
T Consensus 469 ~g~I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~ 547 (709)
T COG2274 469 QGEIEFENVSFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRR 547 (709)
T ss_pred CceEEEEEEEEEeCCC-CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHh
Confidence 8999999999999765 357999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccC
Q 001041 461 KIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1178)
Q Consensus 461 ~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~ 540 (1178)
+|+||+||+.+|+|||||||+++.|+.++|+++++|+.++++++|+++|.||+|.+||+|.+|||||||||+||||++++
T Consensus 548 ~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~ 627 (709)
T COG2274 548 QVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSK 627 (709)
T ss_pred heeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHH
Q 001041 541 PRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIR 620 (1178)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 620 (1178)
|+||||||||||||+++|+.|.+.+.+..++||+|+||||++++++||+|+|||+|+|+|+|+|+||++. ++.|.++++
T Consensus 628 P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~-~g~y~~l~~ 706 (709)
T COG2274 628 PKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ-GGLYARLYQ 706 (709)
T ss_pred CCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHh-cChHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 899999886
Q ss_pred HH
Q 001041 621 LQ 622 (1178)
Q Consensus 621 ~~ 622 (1178)
.|
T Consensus 707 ~q 708 (709)
T COG2274 707 QQ 708 (709)
T ss_pred cc
Confidence 44
No 12
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.1e-84 Score=815.02 Aligned_cols=571 Identities=22% Similarity=0.330 Sum_probs=485.3
Q ss_pred cccccchHHHHhHhhch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHH
Q 001041 39 EKTESVPFYKLFTFADS-ADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSG 117 (1178)
Q Consensus 39 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (1178)
++.+.+++..|..|.+. ..+...++.+++.++..++.....+|+.+|.+.-...... . .....+.+.|.+++++.+
T Consensus 796 ~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~--~-~~~~~~~~vY~~l~~~~~ 872 (1381)
T KOG0054|consen 796 RETGKVSWSVYKKYIKAAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTT--T-VSTSFYLGVYALLGVASS 872 (1381)
T ss_pred HhcCEeeHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc--C-CCcchHHHHHHHHHHHHH
Confidence 35567777777777765 3444444455666666677777778887777653221110 0 012235566778888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 118 IASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFL 197 (1178)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~ 197 (1178)
++.+++.+.+.+.+.++++.+|..++++++|.||+|||+ ||+|+|+||||+|++.+|+.++..+..+++.++.+++.++
T Consensus 873 ~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdt-TP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~ 951 (1381)
T KOG0054|consen 873 LLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDT-TPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILV 951 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCC-CCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999997 6999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHH
Q 001041 198 IAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAY 277 (1178)
Q Consensus 198 ~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 277 (1178)
++.+..|+..++++++..+++.+..++.+..+...+.....+++..+|++|+++|+.|||+|+.|++|.+++....+...
T Consensus 952 vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~ 1031 (1381)
T KOG0054|consen 952 VISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENS 1031 (1381)
T ss_pred HhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhH
Confidence 99999998888877777778878888888888887777888999999999999999999999999999999988877765
Q ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 278 KS---GVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAA 354 (1178)
Q Consensus 278 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~ 354 (1178)
+. .....+|.++++.+...+..+..++...+. ..+..++|.+--.+.+.++....+++.......+...+.++
T Consensus 1032 ~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~----~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SV 1107 (1381)
T KOG0054|consen 1032 RAFFLSISANRWLAVRLELLGNLVVLIAALFAVLL----PSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSV 1107 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence 54 344566667766655433333322222211 12224566666666777888888889999999999999999
Q ss_pred HHHHHHhccCCCCCcCC---CCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHH
Q 001041 355 FKMFETINRKPEIDAYD---TKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISL 431 (1178)
Q Consensus 355 ~r~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~ 431 (1178)
+|+.|+.+.++| ++.+ ..+++.||.+|+|+|+|++.+|... .++|||||||+|+|||+|||||++|||||||+++
T Consensus 1108 ERv~eY~~~~~E-~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~a 1185 (1381)
T KOG0054|consen 1108 ERVLEYTDIPSE-APLEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILA 1185 (1381)
T ss_pred hHHHHHhcCCCC-CCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHH
Confidence 999999987666 2221 1135568889999999999999643 5789999999999999999999999999999999
Q ss_pred HhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCC
Q 001041 432 IERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQG 511 (1178)
Q Consensus 432 l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 511 (1178)
|+|+.+|.+|+|.|||+|++++++++||++++++||||.||+||+|.||+ +..+++|+++|+|++.|++.+.++++|+|
T Consensus 1186 LFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLD-Pf~e~sD~~IW~ALe~~~Lk~~v~~~p~~ 1264 (1381)
T KOG0054|consen 1186 LFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLD-PFDEYSDDEIWEALERCQLKDVVSSLPGG 1264 (1381)
T ss_pred HHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccC-cccccCHHHHHHHHHHhChHHHHhhCCcC
Confidence 99999999999999999999999999999999999999999999999999 56789999999999999999999999999
Q ss_pred ccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEE
Q 001041 512 IDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIA 591 (1178)
Q Consensus 512 ~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~ 591 (1178)
+|+.|.|+|.|||-||||.+||||||+++++||+|||+||++|++|+..||++|++.+++||||.|+||++++.+||||+
T Consensus 1265 Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVl 1344 (1381)
T KOG0054|consen 1265 LDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVL 1344 (1381)
T ss_pred CCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCEEEEecChhHHhcCCCchHHHHHH
Q 001041 592 VIHRGKIVEKGTHSKLVEDPEGAYSQLIR 620 (1178)
Q Consensus 592 ~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 620 (1178)
|||+|+|+|+|+|++|++++++.|+.+..
T Consensus 1345 Vld~G~v~EfdsP~~Ll~~~~S~f~~~l~ 1373 (1381)
T KOG0054|consen 1345 VLDAGRVVEFDSPAELLSDKDSLFSSLLK 1373 (1381)
T ss_pred EeeCCeEeecCChHHHHhCCcchHHHHHH
Confidence 99999999999999999998888875554
No 13
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.8e-80 Score=769.45 Aligned_cols=567 Identities=22% Similarity=0.297 Sum_probs=461.8
Q ss_pred HHHHhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 46 FYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVT 125 (1178)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 125 (1178)
++.+++|.++.++ .+++++++.++..++....|++++.++|........ ......+...++++.++..++.+++.+
T Consensus 10 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (588)
T PRK11174 10 TRWLKQQSKPAKR-WLNLSILLGFLSGLLLIAQAWLLATILQALIIENIP---REALLPPFILLILLFVLRALLAWLRER 85 (588)
T ss_pred hHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666665443 344566666666777777888888988865321111 011222233344445566677788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001041 126 CWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWL 205 (1178)
Q Consensus 126 ~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (1178)
...+.+.+...++|..+++++++.|.++|++. ++|++++|+++|++.+++.+...+..++..++.+++.++++++++|.
T Consensus 86 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~-~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 164 (588)
T PRK11174 86 VGFKAGQHIRQQIRQQVLDKLQQLGPAWIQGK-PAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWA 164 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchhhccC-CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999874 99999999999999999999888888888888888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 206 LTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGL 285 (1178)
Q Consensus 206 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 285 (1178)
+++++++.+|+++++..++.+..++..++.++..++..+.+.|.++|+++||+|++|+.+.+++.+..++..+...+...
T Consensus 165 l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 244 (588)
T PRK11174 165 AGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLR 244 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888888888888888888899999999999999999999999999999999888877766655555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 286 AAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQV---------VNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFK 356 (1178)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r 356 (1178)
..+....+..++..+..++.+++++... .+.++.|.+ +..+.+......++..+......+..+..+.+|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~r 323 (588)
T PRK11174 245 MAFLSSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAES 323 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443333333333333323323333322 255555532 111122223345677777778888999999999
Q ss_pred HHHHhccCCCCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC
Q 001041 357 MFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
+.++++.+++.+... ....+....+.|+++||+|.|++ ++++|+|+||+|+|||++|||||||||||||+++|+|++
T Consensus 324 i~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 324 LVTFLETPLAHPQQG-EKELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred HHHHHcCCCcccCCC-ccccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 999997754322111 11111112356999999987763 357999999999999999999999999999999999999
Q ss_pred CCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchh
Q 001041 437 DPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLV 516 (1178)
Q Consensus 437 ~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~ 516 (1178)
|++|+|.+||+|+++++.+++|++|+||||+|++|++||||||.+|.|++++++++++|+.|+++++++.+|+|+||.+
T Consensus 401 -p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~v 479 (588)
T PRK11174 401 -PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPI 479 (588)
T ss_pred -CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCC
Q 001041 517 GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRG 596 (1178)
Q Consensus 517 ~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G 596 (1178)
||+|.+|||||||||+||||++++|+||||||||||||+++++.+++.+++..+++|+|+||||++++..||+|++|++|
T Consensus 480 ge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G 559 (588)
T PRK11174 480 GDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDG 559 (588)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999988899999999999999999999999999
Q ss_pred EEEEecChhHHhcCCCchHHHHHHHHh
Q 001041 597 KIVEKGTHSKLVEDPEGAYSQLIRLQE 623 (1178)
Q Consensus 597 ~i~~~g~~~~l~~~~~~~~~~~~~~~~ 623 (1178)
+|+|.|+|+||+++ ++.|++++..|+
T Consensus 560 ~i~e~G~~~eL~~~-~~~y~~l~~~q~ 585 (588)
T PRK11174 560 QIVQQGDYAELSQA-GGLFATLLAHRQ 585 (588)
T ss_pred eEeecCCHHHHHhc-chHHHHHHHHhh
Confidence 99999999999987 678999887554
No 14
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=3.8e-80 Score=776.08 Aligned_cols=565 Identities=36% Similarity=0.558 Sum_probs=485.0
Q ss_pred cchHHHHhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 43 SVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFL 122 (1178)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 122 (1178)
...++++++++++. +..+++.+++.++..++....|++.+.++|......+.. ......+.++++.++..++.++
T Consensus 146 ~~~~~~l~~~~~~~-~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l 220 (711)
T TIGR00958 146 ADLLFRLLGLSGRD-WPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPP----ALASAIFFMCLLSIASSVSAGL 220 (711)
T ss_pred hhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777776543 334455566666666777777888999998765332211 1222223344455556677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 123 QVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIK 202 (1178)
Q Consensus 123 ~~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (1178)
+.++..+...++..++|..++++++++|+.+|++. ++|++++|+++|++.+++.+...+..++..+..+++.+++++.+
T Consensus 221 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~-~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~ 299 (711)
T TIGR00958 221 RGGSFNYTMARINLRIREDLFRSLLRQDLGFFDEN-KTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWL 299 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999999999999999999974 99999999999999999999998899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Q 001041 203 GWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQ 282 (1178)
Q Consensus 203 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 282 (1178)
+|.+++++++.+|+.+++...+.+..++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+
T Consensus 300 s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~ 379 (711)
T TIGR00958 300 SPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKR 379 (711)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888999998888888889999999999999999999999999999999999998887777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001041 283 EGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETIN 362 (1178)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 362 (1178)
.....+.......++..+..++.+++|.+++..+.++.|.+++++.+......++..+......+..+..+.+|++++++
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~ 459 (711)
T TIGR00958 380 KALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLD 459 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 65555544444444555555666778888899999999999888888877788888888899999999999999999998
Q ss_pred cCCCCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCc
Q 001041 363 RKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442 (1178)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~ 442 (1178)
.+++.+... ...+.+..+.|+++||+|+||+++++++|+|+||+|+|||+++||||||||||||+++|+|+|+|++|+
T Consensus 460 ~~~~~~~~~--~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~ 537 (711)
T TIGR00958 460 RKPNIPLTG--TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQ 537 (711)
T ss_pred CCCCCCCCC--CCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCE
Confidence 766533211 112223456799999999998765578999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCC
Q 001041 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522 (1178)
Q Consensus 443 i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~ 522 (1178)
|.+||+|+++++.+++|++|+||||+|++|++||||||.+|.++.++++++++++.++++++++++|+|+||.+||+|.+
T Consensus 538 I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~ 617 (711)
T TIGR00958 538 VLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQ 617 (711)
T ss_pred EEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCc
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEec
Q 001041 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 523 lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g 602 (1178)
|||||||||+||||++++|+|||||||||+||+++++.+++ ....+++|+|+||||++++..||+|++|++|+|+|.|
T Consensus 618 LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~G 695 (711)
T TIGR00958 618 LSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMG 695 (711)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEee
Confidence 99999999999999999999999999999999999999998 3335789999999999999999999999999999999
Q ss_pred ChhHHhcCCCchHHHH
Q 001041 603 THSKLVEDPEGAYSQL 618 (1178)
Q Consensus 603 ~~~~l~~~~~~~~~~~ 618 (1178)
+|+||+++ ++.|+++
T Consensus 696 t~~eL~~~-~~~y~~l 710 (711)
T TIGR00958 696 THKQLMED-QGCYKHL 710 (711)
T ss_pred CHHHHHhC-CCchHhc
Confidence 99999987 5677765
No 15
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=6.2e-80 Score=812.52 Aligned_cols=570 Identities=29% Similarity=0.467 Sum_probs=477.2
Q ss_pred HHHHhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 46 FYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVT 125 (1178)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 125 (1178)
+..++++..+..+ .++++++++++.+++.|+++++++.+++.+..... .......+++++++++++.+++.+++.+
T Consensus 813 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~l~~~~~~i~~~~~~~l~~~ 888 (1466)
T PTZ00265 813 LRIVYREIFSYKK-DVTIIALSILVAGGLYPVFALLYAKYVSTLFDFAN---LEANSNKYSLYILVIAIAMFISETLKNY 888 (1466)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444554433322 35667778888889999999999999986643211 1122334556666777888888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhhhc-cCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001041 126 CWMITGERQATRIRGLYLKTILRQDVAFFDN-ETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGW 204 (1178)
Q Consensus 126 ~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~-~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (1178)
+..+.+.++..++|..++++++++|++||++ .+++|++++|+++|++.+++.+...+..++..++.+++.++++++++|
T Consensus 889 ~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~ 968 (1466)
T PTZ00265 889 YNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCP 968 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999985 347999999999999999999998899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----------------HHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHH
Q 001041 205 LLTLVMLSSIPLLAMSGGVMAIMISKMS-SR-----------------GQGAYAKAASVVEQTIGSIRTVASFTGEKQAM 266 (1178)
Q Consensus 205 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~-~~-----------------~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~ 266 (1178)
.++++++++++++ ...+.+..+... ++ .++..++....+.|.+.|+++||+|+.|+.+.
T Consensus 969 ~l~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~ 1045 (1466)
T PTZ00265 969 IVAAVLTGTYFIF---MRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFC 1045 (1466)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHH
Confidence 8877665433333 333333222111 11 12335566889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 267 SNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSA 346 (1178)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~ 346 (1178)
++|.+......+...+.....++..++..++..+..++.+|+|+.++..+.++.+.++.++.+++....++..+......
T Consensus 1046 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~ 1125 (1466)
T PTZ00265 1046 NLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGD 1125 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998887777777777777777777777777788899999999999999999887665544444455667777888
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcCCCCCcc---cCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCC
Q 001041 347 FGAGQAAAFKMFETINRKPEIDAYDTKGKI---LDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGS 423 (1178)
Q Consensus 347 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~Gs 423 (1178)
+..+..+++|+++.++.+++.+..+..... +++..|.|+|+||+|+||++++.++|+|+||+|+||+++||||||||
T Consensus 1126 ~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGs 1205 (1466)
T PTZ00265 1126 SENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGS 1205 (1466)
T ss_pred HHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCC
Confidence 999999999999999876543221111111 12345789999999999876666899999999999999999999999
Q ss_pred cHHHHHHHHhccCCC------------------------------------------------------CCCcEEECCee
Q 001041 424 GKSTVISLIERFYDP------------------------------------------------------QAGEVLIDGIN 449 (1178)
Q Consensus 424 GKStl~~~l~g~~~~------------------------------------------------------~~G~i~i~g~~ 449 (1178)
|||||+++|+|+|+| ++|+|++||+|
T Consensus 1206 GKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~d 1285 (1466)
T PTZ00265 1206 GKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVD 1285 (1466)
T ss_pred CHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEE
Confidence 999999999999998 59999999999
Q ss_pred cCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHH
Q 001041 450 LKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1178)
Q Consensus 450 ~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkq 529 (1178)
+++++.+++|++|+||||+|+||+|||||||.+|.|+++++++++||+.++++++|.+||+|+||.|||+|.+|||||||
T Consensus 1286 i~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQ 1365 (1466)
T PTZ00265 1286 ICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQ 1365 (1466)
T ss_pred HHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhhccCEEEEEeC----CEEE-Eec
Q 001041 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRNADMIAVIHR----GKIV-EKG 602 (1178)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~----G~i~-~~g 602 (1178)
||||||||+++|+||||||||||||+++++.|+++|.+.. +++|+|+||||+++++.||+|+||++ |+++ |+|
T Consensus 1366 RIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~G 1445 (1466)
T PTZ00265 1366 RIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHG 1445 (1466)
T ss_pred HHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEec
Confidence 9999999999999999999999999999999999999874 68999999999999999999999999 9955 899
Q ss_pred ChhHHhcCCCchHHHHHHHH
Q 001041 603 THSKLVEDPEGAYSQLIRLQ 622 (1178)
Q Consensus 603 ~~~~l~~~~~~~~~~~~~~~ 622 (1178)
+|+||++..++.|+++++.+
T Consensus 1446 th~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1446 THEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred CHHHHHhcCCChHHHHHhhc
Confidence 99999985478999998754
No 16
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=5.7e-79 Score=751.32 Aligned_cols=551 Identities=34% Similarity=0.591 Sum_probs=478.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 60 LMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIR 139 (1178)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr 139 (1178)
.+.++.++.++........+++++.+++.... .. .....+...++++.++..++.++..+...+.+.+...++|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr 88 (567)
T COG1132 15 LLLLAILLLLLSALLSLLLPLLIGRIIDALLA--DL----GELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLR 88 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666777788888887651 11 1222233334444456667777777777777799999999
Q ss_pred HHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 001041 140 GLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAM 219 (1178)
Q Consensus 140 ~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~ 219 (1178)
..+++++++.|+.+|++ +++|++++|+++|++.++..+......+...+..+++.+++++..+|.+++++++..|++.+
T Consensus 89 ~~~~~~l~~~~~~~~~~-~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~ 167 (567)
T COG1132 89 RDLFEKLLRLPLSFFDK-AKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLAL 167 (567)
T ss_pred HHHHHHHHhCCHHHhCc-CCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 99999999999999997 48999999999999999999988755555567888888999999999999999998999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 220 SGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVF 299 (1178)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (1178)
...++.++.++..+..++..++..+.+.|.++|+++||+|+.++...+++.+..++..+...+.....+........+..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (567)
T COG1132 168 VLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSS 247 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888877788888888899999999999999999999999999998888888877777766666666665556666667
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCCCCcccCC
Q 001041 300 CSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDD 379 (1178)
Q Consensus 300 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 379 (1178)
+...+.+++|...+..+.++.|.+..++.+......++..+......+..+..+++|+++.++.+++....+. ....
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~---~~~~ 324 (567)
T COG1132 248 LGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPD---PLKD 324 (567)
T ss_pred HHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCC---CCCC
Confidence 7777778888888888889999988887777777778888888889999999999999999998665332221 1233
Q ss_pred CcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHh
Q 001041 380 IRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIR 459 (1178)
Q Consensus 380 ~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r 459 (1178)
..+.|+|+||+|+|++ ++++|+|+||+++|||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++..++|
T Consensus 325 ~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr 402 (567)
T COG1132 325 TIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLR 402 (567)
T ss_pred CCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHH
Confidence 4577999999999974 35799999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 460 KKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 460 ~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
++|+||||||++|++||+|||.+|.|++++++++++|+.++++|+++++|+|+||.+||+|.+||||||||||||||+++
T Consensus 403 ~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~ 482 (567)
T COG1132 403 KRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLR 482 (567)
T ss_pred HhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHH
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLI 619 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 619 (1178)
+|+|||||||||+||+++|+.+++.+.+..++||+++||||++++++||+|+|||+|+|+|.|+|+||+++ ++.|++++
T Consensus 483 ~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~-~g~y~~l~ 561 (567)
T COG1132 483 NPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAK-GGLYARLY 561 (567)
T ss_pred CCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHc-CCHHHHHH
Confidence 99999999999999999999999999988889999999999999999999999999999999999999998 89999999
Q ss_pred HHHh
Q 001041 620 RLQE 623 (1178)
Q Consensus 620 ~~~~ 623 (1178)
+.+.
T Consensus 562 ~~~~ 565 (567)
T COG1132 562 QAQG 565 (567)
T ss_pred HHhh
Confidence 7653
No 17
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-80 Score=717.78 Aligned_cols=466 Identities=33% Similarity=0.518 Sum_probs=436.8
Q ss_pred hhHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 706 PTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFF 785 (1178)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1178)
.+++++.+.+++++++..++++.++......+.|++.+.++|........ .........++.++.++.+++.+++.+++
T Consensus 134 ~~~rl~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~-~~~~~~~~~~l~~l~~~~a~~~~~r~~~~ 212 (716)
T KOG0058|consen 134 LLKRLLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDS-ADALKRACTILLGLFLIGALANAIRGGLL 212 (716)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788999999999999999999999998999999999999988651111 11222345556677788889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001041 786 AVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQL 865 (1178)
Q Consensus 786 ~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l 865 (1178)
..++.++..++|..+|+++++++++||| ++.+|+|++|++.|+..+.+.++..+...+.++++.++++++|+++||+|
T Consensus 213 ~~a~~rv~~rlR~~lF~sil~QdiaFFD--~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~L 290 (716)
T KOG0058|consen 213 QYAGERVVARLRTDLFRSLLRQDIAFFD--ENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRL 290 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhc--cCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHH
Confidence 9999999999999999999999999999 58899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHH
Q 001041 866 ALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMV 945 (1178)
Q Consensus 866 ~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 945 (1178)
+++.++.+|+++++..++.+++++.+++.|++.++++....|.+.+++|||+|+.|+++.+||.+..++..+...|....
T Consensus 291 tlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a 370 (716)
T KOG0058|consen 291 TLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVA 370 (716)
T ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCC
Q 001041 946 SGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESK 1025 (1178)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~ 1025 (1178)
.+.+.....+..++....++++|++++..|.+|.|++.+|++|......++..+..+..++.++..+.+|++|++|.+|.
T Consensus 371 ~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~ 450 (716)
T KOG0058|consen 371 YGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPR 450 (716)
T ss_pred hhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEEC
Q 001041 1026 IDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLD 1105 (1178)
Q Consensus 1026 ~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~ID 1105 (1178)
.++. +...+....|.|+|+||+|+||.||+.+||||+||+|+|||+||+||||||||||+++||+|||||++|+|++|
T Consensus 451 i~~~--G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllD 528 (716)
T KOG0058|consen 451 IPLT--GTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLD 528 (716)
T ss_pred CCCC--CccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEEC
Confidence 7654 22222257899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1106 GVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1106 G~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
|+||++++.++||++||+|.|||+||+|||+|||+||.. ++|||||++|||+||+||||+++|+||||.|+
T Consensus 529 G~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~-~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VG 599 (716)
T KOG0058|consen 529 GVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLD-NATDEEIEAAAKMANAHEFITNFPDGYNTVVG 599 (716)
T ss_pred CeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCC-CCCHHHHHHHHHHhChHHHHHhCccccccccC
Confidence 999999999999999999999999999999999999965 89999999999999999999999999999986
No 18
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=4.7e-78 Score=758.83 Aligned_cols=563 Identities=27% Similarity=0.359 Sum_probs=477.0
Q ss_pred chHHHHhHh-hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 44 VPFYKLFTF-ADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFL 122 (1178)
Q Consensus 44 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 122 (1178)
..+++++++ .++.+ ..+...++++++..+.....|++++.++|.+...... ......++.++++.++..++.++
T Consensus 121 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~ 195 (686)
T TIGR03797 121 LGLRDLLRFALRGAR-RDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDADR----SLLVQIALALLAAAVGAAAFQLA 195 (686)
T ss_pred ccHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCh----hHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666665 23222 2223333344444444445556777888876533211 22233344444555666778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 123 QVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIK 202 (1178)
Q Consensus 123 ~~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (1178)
+.+.....+.++..++|..+++++++.|+.+|++. ++|++++|++ |++.+++.+...+...+..+..+++.+++++++
T Consensus 196 ~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~-~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 273 (686)
T TIGR03797 196 QSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQY-STGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYY 273 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCC-ChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999875 9999999997 899999998887777777777777788888999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Q 001041 203 GWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQ 282 (1178)
Q Consensus 203 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 282 (1178)
+|.+++++++++|+++++..++.+..++..++..+..++..+.+.|.++|+++||+++.|+.+.++|.+...+..+...+
T Consensus 274 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 353 (686)
T TIGR03797 274 SWKLALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELS 353 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888888888888888888888899999999999999999999999999999999988888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001041 283 EGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETIN 362 (1178)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 362 (1178)
......+...+..++..+..++.+++|++++..+.++.|.++++..+......++..+...+..+..+..+.+|+.++++
T Consensus 354 ~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~ 433 (686)
T TIGR03797 354 AQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILE 433 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77666665555556666666777888999999999999999888777777777888888889999999999999999987
Q ss_pred cCCCCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCc
Q 001041 363 RKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442 (1178)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~ 442 (1178)
.++|.+... ..+.+..+.|+++||+|+|++. ++++|+|+||+|+|||+++|||+||||||||+++|+|+|+|++|+
T Consensus 434 ~~~e~~~~~---~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~ 509 (686)
T TIGR03797 434 ALPEVDEAK---TDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGS 509 (686)
T ss_pred CCcccccCc---CCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCE
Confidence 765432111 1122235679999999999743 367999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCC
Q 001041 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522 (1178)
Q Consensus 443 i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~ 522 (1178)
|.+||+|+++++.+++|++|+||||||++|+|||||||.++.| .++++++++++.++++++++.+|+|+||.+||+|.+
T Consensus 510 I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~ 588 (686)
T TIGR03797 510 VFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGT 588 (686)
T ss_pred EEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCC
Confidence 9999999999999999999999999999999999999999988 899999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEec
Q 001041 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 523 lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g 602 (1178)
|||||||||+||||++++|+|||||||||+||+++++.+.+.+++. ++|+|+||||+++++.||+|++|++|+|+|.|
T Consensus 589 LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G 666 (686)
T TIGR03797 589 LSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQG 666 (686)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999999999999886 68999999999999999999999999999999
Q ss_pred ChhHHhcCCCchHHHHHHH
Q 001041 603 THSKLVEDPEGAYSQLIRL 621 (1178)
Q Consensus 603 ~~~~l~~~~~~~~~~~~~~ 621 (1178)
+|+||+++ ++.|++++..
T Consensus 667 ~~~~Ll~~-~~~y~~l~~~ 684 (686)
T TIGR03797 667 TYDELMAR-EGLFAQLARR 684 (686)
T ss_pred CHHHHHhC-CcHHHHHHHh
Confidence 99999986 6889988763
No 19
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=2.8e-78 Score=806.99 Aligned_cols=569 Identities=21% Similarity=0.288 Sum_probs=456.5
Q ss_pred ccchHHHHhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 42 ESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASF 121 (1178)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 121 (1178)
+.+++..|..|.+...+...++.+++.++..++..+.++|++.|.+......... ....+...|++++++..++.+
T Consensus 948 g~v~~~~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~----~~~~~~~iy~~l~i~~~~~~~ 1023 (1522)
T TIGR00957 948 GQVELSVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQN----NTSLRLSVYGALGILQGFAVF 1023 (1522)
T ss_pred CcccHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCC----CcchHHHHHHHHHHHHHHHHH
Confidence 3444555555554433333333333333444444555667777665321110110 011223356667777777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 122 LQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFI 201 (1178)
Q Consensus 122 ~~~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (1178)
+..++..+.+.+++.++|..++++++++|++||++ +++|+++||+++|++.+++.++..+..++..++.+++.++++++
T Consensus 1024 ~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~-~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~ 1102 (1522)
T TIGR00957 1024 GYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFER-TPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILL 1102 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhcc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87788888899999999999999999999999997 59999999999999999999999999999999888888888888
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Q 001041 202 KGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGV 281 (1178)
Q Consensus 202 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 281 (1178)
.+|++++++++++++++++..++.+..++..+......++..+++.|+++|+++||+|++|+.+.+++.+..+...+...
T Consensus 1103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~ 1182 (1522)
T TIGR00957 1103 ATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYY 1182 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 88877666666666666666666666666666667778889999999999999999999999999999888877766654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 282 QEGLAAGIGLGMVMLIVFCSYALSVWYGGKLIL-EEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFET 360 (1178)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~ 360 (1178)
.......+......++..+ +.++.+...+. .+.++.|.+..++.+.+....++..+...+..+..++.+++|+.++
T Consensus 1183 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~ 1259 (1522)
T TIGR00957 1183 PSIVANRWLAVRLECVGNC---IVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEY 1259 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333332222121111111 11222222232 4568888887777777777788888888999999999999999999
Q ss_pred hccCCCCCcC--CCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC
Q 001041 361 INRKPEIDAY--DTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP 438 (1178)
Q Consensus 361 ~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~ 438 (1178)
++.++|.+.. ....++.++.+|.|+|+||+|+|+++ .+++|+|+||+|+|||++|||||||||||||+++|+|+++|
T Consensus 1260 ~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~ 1338 (1522)
T TIGR00957 1260 SETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYRED-LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINES 1338 (1522)
T ss_pred hcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccC
Confidence 9776553211 11112224567899999999999754 24799999999999999999999999999999999999999
Q ss_pred CCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcC
Q 001041 439 QAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGE 518 (1178)
Q Consensus 439 ~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~ 518 (1178)
++|+|.|||+|+++++++++|++|+||||||.+|+|||||||+.. .++++++++++++.|++++++.++|+|+||.+||
T Consensus 1339 ~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~-~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e 1417 (1522)
T TIGR00957 1339 AEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPF-SQYSDEEVWWALELAHLKTFVSALPDKLDHECAE 1417 (1522)
T ss_pred CCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcc-cCCCHHHHHHHHHHcCcHHHHhhCccCCCceecC
Confidence 999999999999999999999999999999999999999999943 3689999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEE
Q 001041 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKI 598 (1178)
Q Consensus 519 ~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i 598 (1178)
+|.+||||||||+|||||++++|+|||||||||+||++|++.|++.|++.++++|+|+||||++++.+||+|+|||+|+|
T Consensus 1418 ~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~I 1497 (1522)
T TIGR00957 1418 GGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEV 1497 (1522)
T ss_pred CCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecChhHHhcCCCchHHHHHHH
Q 001041 599 VEKGTHSKLVEDPEGAYSQLIRL 621 (1178)
Q Consensus 599 ~~~g~~~~l~~~~~~~~~~~~~~ 621 (1178)
+|.|+|+||+++ ++.|+++++.
T Consensus 1498 vE~G~~~eLl~~-~~~f~~l~~~ 1519 (1522)
T TIGR00957 1498 AEFGAPSNLLQQ-RGIFYSMAKD 1519 (1522)
T ss_pred EEECCHHHHHhC-CCHHHHHHHH
Confidence 999999999987 6899998863
No 20
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=2.5e-77 Score=754.81 Aligned_cols=565 Identities=28% Similarity=0.408 Sum_probs=476.5
Q ss_pred chHHHHhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 44 VPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQ 123 (1178)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 123 (1178)
.++..++.+.++.++. ++..++++++..++....|++++.++|.+...... +........++++.++..++.+++
T Consensus 142 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~ 216 (708)
T TIGR01193 142 NSLLKFIPLITRQKKL-IVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMM----GTLGIISIGLIIAYIIQQILSYIQ 216 (708)
T ss_pred chHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCh----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666665543332 23333444444445555666888888876543211 122223333344455566778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001041 124 VTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKG 203 (1178)
Q Consensus 124 ~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (1178)
.++..+.+.++..++|..+++++++.|+.+|++. ++|++++|++ |++.+.+.+.......+..+..++..++++++++
T Consensus 217 ~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~~-~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 294 (708)
T TIGR01193 217 IFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTR-RTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQN 294 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-chhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888889999999999999999999999999874 9999999998 8999999888777777777777777778888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Q 001041 204 WLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQE 283 (1178)
Q Consensus 204 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 283 (1178)
|.+++++++.+|+++++..++.+..++..++.++..++..+.+.|.++|+++||++|+|+.+.+++.+...+..+...+.
T Consensus 295 ~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 374 (708)
T TIGR01193 295 MLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKY 374 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998889999999999988999999999999999999999999999999999998888777776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 001041 284 GLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINR 363 (1178)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~ 363 (1178)
....+....+..++..+..++.+++|+.++..+.++.|.++++..+......++..+...+..+..+..+.+|+.++++.
T Consensus 375 ~~~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~ 454 (708)
T TIGR01193 375 QKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLV 454 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 66555554444555555666778889999999999999998887777777778888888899999999999999999887
Q ss_pred CCCCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcE
Q 001041 364 KPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443 (1178)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i 443 (1178)
++|.+.... ....++..+.|+++||+|+|++ ++++|+|+||+|+|||+++||||||||||||+++|+|+|+|++|+|
T Consensus 455 ~~e~~~~~~-~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I 531 (708)
T TIGR01193 455 DSEFINKKK-RTELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEI 531 (708)
T ss_pred CCccccccc-ccCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEE
Confidence 655322111 1112334578999999999973 3579999999999999999999999999999999999999999999
Q ss_pred EECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcC-CCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCC
Q 001041 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG-KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522 (1178)
Q Consensus 444 ~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~ 522 (1178)
++||+|+++++.+++|++|+||||+|++|+|||||||.++ .++.++++++++++.+++++++..+|+|+||.+||+|.+
T Consensus 532 ~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~ 611 (708)
T TIGR01193 532 LLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSS 611 (708)
T ss_pred EECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCC
Confidence 9999999999999999999999999999999999999998 577899999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEec
Q 001041 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 523 lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g 602 (1178)
|||||||||+||||++++|+|||||||||+||+++++.+.+.+++. +++|+|+||||++++..||+|++|++|+++|.|
T Consensus 612 LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G 690 (708)
T TIGR01193 612 ISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQG 690 (708)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999999999999875 789999999999999999999999999999999
Q ss_pred ChhHHhcCCCchHHHHHH
Q 001041 603 THSKLVEDPEGAYSQLIR 620 (1178)
Q Consensus 603 ~~~~l~~~~~~~~~~~~~ 620 (1178)
+|+||++. ++.|+++++
T Consensus 691 ~~~~L~~~-~~~y~~l~~ 707 (708)
T TIGR01193 691 SHDELLDR-NGFYASLIH 707 (708)
T ss_pred CHHHHHhc-CCcHHHHhh
Confidence 99999987 678888763
No 21
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=2.4e-77 Score=756.07 Aligned_cols=563 Identities=25% Similarity=0.344 Sum_probs=473.8
Q ss_pred HHHHhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 46 FYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVT 125 (1178)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 125 (1178)
++.++++.++.+. .+...++++++..+.....|++.+.++|........ .........++++.++..++.+++.+
T Consensus 142 ~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~ 216 (710)
T TIGR03796 142 LRALWRRLRGSRG-ALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQ----DWLRPLLLGMGLTALLQGVLTWLQLY 216 (710)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh----hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445444443322 122222333333333344455777778865433211 11222333344445566777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001041 126 CWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWL 205 (1178)
Q Consensus 126 ~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (1178)
.....+.++..++|..+++++++.|+++|++. ++|++++|+++| +.+.+.+...+...+..+..+++.++++++++|.
T Consensus 217 ~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~-~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 294 (710)
T TIGR03796 217 YLRRLQIKLAVGMSARFLWHILRLPVRFFAQR-HAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPV 294 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCC-cccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999875 999999999988 6899998888888888888888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 206 LTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGL 285 (1178)
Q Consensus 206 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 285 (1178)
+++++++.+|+++++..++.+...+..++.++..++..+.+.|.++|+++||++++|+.+.++|.+...+..+...+...
T Consensus 295 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 374 (710)
T TIGR03796 295 LTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGV 374 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888888888888888888889999999999999999999999999999999888887777776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 001041 286 AAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKP 365 (1178)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 365 (1178)
...+...+..++..+..++.+++|++++..+.++.|.++++..+......++..+...+..+..+..+.+|+.++++.++
T Consensus 375 ~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~ 454 (710)
T TIGR03796 375 LTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPV 454 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 66665555556666666777888999999999999999888777777777888888889999999999999999998765
Q ss_pred CCCcCC----CCCccc-CCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCC
Q 001041 366 EIDAYD----TKGKIL-DDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA 440 (1178)
Q Consensus 366 ~~~~~~----~~~~~~-~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~ 440 (1178)
+.+... ...... +...+.|+++||+|+|++. ++++|+|+||+|+|||+++||||||||||||+++|+|+|+|++
T Consensus 455 e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~ 533 (710)
T TIGR03796 455 DPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWS 533 (710)
T ss_pred ccccccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 532211 000111 2335689999999999853 3579999999999999999999999999999999999999999
Q ss_pred CcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCC
Q 001041 441 GEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHG 520 (1178)
Q Consensus 441 G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g 520 (1178)
|+|.+||+|+++++.+++|++|+||||+|++|+|||||||.++.|+.++++++++++.+++++++.++|+|++|.+||+|
T Consensus 534 G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G 613 (710)
T TIGR03796 534 GEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGG 613 (710)
T ss_pred cEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCC
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEE
Q 001041 521 TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVE 600 (1178)
Q Consensus 521 ~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~ 600 (1178)
.+|||||||||+||||++++|+|||||||||+||+++++.+.+.+++ .++|+|+||||++++..||+|++|++|+|++
T Consensus 614 ~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~ 691 (710)
T TIGR03796 614 ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQ 691 (710)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999999987 5899999999999999999999999999999
Q ss_pred ecChhHHhcCCCchHHHHH
Q 001041 601 KGTHSKLVEDPEGAYSQLI 619 (1178)
Q Consensus 601 ~g~~~~l~~~~~~~~~~~~ 619 (1178)
.|+|+||++. ++.|++++
T Consensus 692 ~G~~~~Ll~~-~~~y~~l~ 709 (710)
T TIGR03796 692 RGTHEELWAV-GGAYARLI 709 (710)
T ss_pred ecCHHHHHHc-CCcHHHHh
Confidence 9999999987 67788765
No 22
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.7e-77 Score=676.10 Aligned_cols=549 Identities=27% Similarity=0.412 Sum_probs=462.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 67 GAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTI 146 (1178)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~i 146 (1178)
++.+.++......+++...++.+..... ...+..+...++++.++..++.+.+.......+.++...+|..+++++
T Consensus 8 l~~l~~i~~i~qa~llA~~l~~l~~~~~----~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l 83 (559)
T COG4988 8 LAVLSGIAIIAQAALLADILTKLIEGQL----FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKL 83 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555555555443211 122333444455556667778888777777788888899999999999
Q ss_pred HhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 147 LRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAI 226 (1178)
Q Consensus 147 l~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~ 226 (1178)
.+.++.+-+. +++|+..+.+..-++.++..+...++..+.+.+..+..++.+++++|..++++++.+|++.++...+++
T Consensus 84 ~~~gp~~~~~-~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg~ 162 (559)
T COG4988 84 AKLGPAFIAQ-KPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGL 162 (559)
T ss_pred HhCChhhhcC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998876 599999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 001041 227 MISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALS- 305 (1178)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 305 (1178)
..++..++....+....+++.+.++|+.|+|.|+..+...+++.+...+.++..++......+...+.-++.....++.
T Consensus 163 ~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvA 242 (559)
T COG4988 163 AAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVA 242 (559)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999888888887776666665555555555544444
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCCCCcccCCCcccEE
Q 001041 306 VWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIE 385 (1178)
Q Consensus 306 ~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 385 (1178)
++.|-.++..|.++....+.++...--...++..+...++.-..+..++++++.+++.+++...........+..+.+++
T Consensus 243 v~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~ 322 (559)
T COG4988 243 VYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEIS 322 (559)
T ss_pred HHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCceee
Confidence 33344443325666655544444444445688888888888888888888888888776553322211112222234466
Q ss_pred EEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEE
Q 001041 386 LRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465 (1178)
Q Consensus 386 ~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v 465 (1178)
.+|++|+||+. +++++|+||+++||++++|||+||||||||+++|+|+++|++|+|.+||++..+++.+.+|++++||
T Consensus 323 ~~~l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v 400 (559)
T COG4988 323 LENLSFRYPDG--KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWV 400 (559)
T ss_pred ecceEEecCCC--CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeee
Confidence 67999999854 3899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEE
Q 001041 466 SQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILL 545 (1178)
Q Consensus 466 ~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~ill 545 (1178)
||+|++|.||+||||.+++++.++++++++++.+++.+++.. |+|+||.+||+|.+|||||+||++||||++++++++|
T Consensus 401 ~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~l 479 (559)
T COG4988 401 SQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLL 479 (559)
T ss_pred CCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 999999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHHHhh
Q 001041 546 LDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEA 624 (1178)
Q Consensus 546 lDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 624 (1178)
||||||+||.++|+.|.+.|.++.+++|+|+||||++.+.+||+|+|||+|+++|.|+|++|.++ ++.|++|+..|+.
T Consensus 480 lDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~-~~~y~~l~~~q~~ 557 (559)
T COG4988 480 LDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK-QGLYANLLKQQEG 557 (559)
T ss_pred ecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhc-CcHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999987 7899999986653
No 23
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.3e-77 Score=795.63 Aligned_cols=571 Identities=19% Similarity=0.263 Sum_probs=429.6
Q ss_pred cccchHHHHhHhhchhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 001041 41 TESVPFYKLFTFADSADT-ALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIA 119 (1178)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 119 (1178)
.+.+++..|.+|.+.... .++++.+++.++..++....++|++.|.+....... ....+...|++++++..++
T Consensus 896 ~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~------~~~~~~~i~~~l~~~~~i~ 969 (1622)
T PLN03130 896 TGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTH------GPLFYNLIYALLSFGQVLV 969 (1622)
T ss_pred cCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC------chhHHHHHHHHHHHHHHHH
Confidence 345566666666544221 122222233333334444455666666654221111 1122344566677777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 120 SFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIA 199 (1178)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (1178)
.+++.++..+.+.+++.++|.+++++++++|++||++ +++|+|+||+++|++.+++.++..+..++..+..+++.++++
T Consensus 970 ~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~-~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i 1048 (1622)
T PLN03130 970 TLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHT-NPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLI 1048 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhcc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888899999999999999999999999997 599999999999999999999998888888888888887777
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHH
Q 001041 200 FIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKS 279 (1178)
Q Consensus 200 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~ 279 (1178)
+++.|...+++++++.+++.+..++.+..++..+......++..+++.|+++|+++||+|++++.+.+.+.+..+...+.
T Consensus 1049 ~~~~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~ 1128 (1622)
T PLN03130 1049 GIVSTISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRF 1128 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 77776433332222222222333344444444455556677889999999999999999999998887777666655444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 280 GVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEG-YN-----GGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAA 353 (1178)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~-----~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~ 353 (1178)
.........+......++.. ++.++.+...+..+. .. .+.+..++.+.+.....+..+......+.....+
T Consensus 1129 ~~~~~~~~~wl~~~l~~~~~---~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~s 1205 (1622)
T PLN03130 1129 TLVNMSSNRWLAIRLETLGG---LMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNA 1205 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33222111111111111111 111111112222221 10 1222222223333444555556666777889999
Q ss_pred HHHHHHHhccCCCCCcCCC--CCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHH
Q 001041 354 AFKMFETINRKPEIDAYDT--KGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISL 431 (1178)
Q Consensus 354 ~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~ 431 (1178)
.+|+.++++.++|.+.... ..++.++.+|.|+|+||+|+|+++ .+++|+|+||+|+|||++|||||||||||||+++
T Consensus 1206 veRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~l 1284 (1622)
T PLN03130 1206 VERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNA 1284 (1622)
T ss_pred HHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 9999999987665432111 112234556889999999999643 3579999999999999999999999999999999
Q ss_pred HhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCC
Q 001041 432 IERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQG 511 (1178)
Q Consensus 432 l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 511 (1178)
|+|+++|++|+|.|||+|+++++++++|++|++|||||.+|+|||||||+++. .+++++++++++.+++++++.++|+|
T Consensus 1285 L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~-~~tdeei~~Al~~a~l~~~I~~lp~G 1363 (1622)
T PLN03130 1285 LFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN-EHNDADLWESLERAHLKDVIRRNSLG 1363 (1622)
T ss_pred HhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC-CCCHHHHHHHHHHcCcHHHHHhCccc
Confidence 99999999999999999999999999999999999999999999999999876 57999999999999999999999999
Q ss_pred ccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEE
Q 001041 512 IDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIA 591 (1178)
Q Consensus 512 ~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~ 591 (1178)
+||.+||+|.+||||||||||||||++++|+|||||||||+||++|++.|++.|++.+++||+|+||||++++.+||+|+
T Consensus 1364 Ldt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIl 1443 (1622)
T PLN03130 1364 LDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRIL 1443 (1622)
T ss_pred cCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCEEEEecChhHHhcCCCchHHHHHHHHh
Q 001041 592 VIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQE 623 (1178)
Q Consensus 592 ~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 623 (1178)
||++|+|+|.|+|++|++++++.|+++++...
T Consensus 1444 VLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~ 1475 (1622)
T PLN03130 1444 VLDAGRVVEFDTPENLLSNEGSAFSKMVQSTG 1475 (1622)
T ss_pred EEECCEEEEeCCHHHHHhCCCCHHHHHHHHcC
Confidence 99999999999999999876789999987543
No 24
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.9e-76 Score=726.73 Aligned_cols=566 Identities=22% Similarity=0.322 Sum_probs=466.0
Q ss_pred HHHHhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchh-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 46 FYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSE-TVDKVSKVAVKFVYLGIGSGIASFLQV 124 (1178)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~ 124 (1178)
+++++++.++.++ .+++++++.++..++....++++++++|.......... ..... .....+++++++..++.+++.
T Consensus 4 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 81 (574)
T PRK11160 4 LLPFLKLYKRHWF-MLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYM-LPAAGVRGAAIGRTAGRYGER 81 (574)
T ss_pred hHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHH-hHHHHHHHHHHHHHHHHHHHH
Confidence 3345555544332 33344555555555555566677888875431111000 00111 112233345566777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001041 125 TCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGW 204 (1178)
Q Consensus 125 ~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (1178)
++....+.+...++|.++++++++.|+.+|++. ++|++++|+++|++.+++.+...+..++..++.+++.++++++++|
T Consensus 82 ~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~-~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (574)
T PRK11160 82 LVSHDATFRVLTHLRVFTFSKLLPLSPAGLARY-RQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDL 160 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccChHhhccC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888999999999999999999999999974 9999999999999999999998888888888888888899999999
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Q 001041 205 LLTLVMLSSIPLLAMS-GGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQE 283 (1178)
Q Consensus 205 ~l~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 283 (1178)
.+++++++.+|+++++ ..++.+..++..++.++..++..+.+.|.++|+++||+|+.|+.+.+++.+..++..+...+.
T Consensus 161 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 240 (574)
T PRK11160 161 TLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQ 240 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Confidence 9999887777766543 455667777777788888899999999999999999999999999999999998888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001041 284 GLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLT-GSMSLGEASPCLSAFGAGQAAAFKMFETIN 362 (1178)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~-~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 362 (1178)
....+....+..++..+..++.+++|..+ ..+.++.|.+++++.+... ...++..+......+..+..+.+|+.++++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~ 319 (574)
T PRK11160 241 ANLTGLSQALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITE 319 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77776666665555556666667778776 4677888887665544322 223455556667788889999999999998
Q ss_pred cCCCCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCc
Q 001041 363 RKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442 (1178)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~ 442 (1178)
.+++.+.... ....+..+.|+++||+|+|++. ++++|+|+||+++|||+++||||||||||||+++|+|+++|++|+
T Consensus 320 ~~~~~~~~~~--~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~ 396 (574)
T PRK11160 320 QKPEVTFPTT--STAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGE 396 (574)
T ss_pred CCCCCCCCcc--cCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence 7655322111 1112234679999999999753 347999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCC
Q 001041 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522 (1178)
Q Consensus 443 i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~ 522 (1178)
|.+||+|+++++.+++|++|+||||+|++|++||+|||.++.|+.++++++++++.++++++++. |+|+||.+||+|.+
T Consensus 397 I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~ 475 (574)
T PRK11160 397 ILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQ 475 (574)
T ss_pred EEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCC
Confidence 99999999999999999999999999999999999999999988999999999999999999999 99999999999999
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEec
Q 001041 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 523 lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g 602 (1178)
||||||||++||||++++|+|||||||||+||+++++.+.+.+.+..+++|+|+||||++++..||+|++|++|+++|.|
T Consensus 476 LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g 555 (574)
T PRK11160 476 LSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQG 555 (574)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeC
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred ChhHHhcCCCchHHHHHH
Q 001041 603 THSKLVEDPEGAYSQLIR 620 (1178)
Q Consensus 603 ~~~~l~~~~~~~~~~~~~ 620 (1178)
+|+||+++ ++.|+++++
T Consensus 556 ~~~~l~~~-~g~y~~l~~ 572 (574)
T PRK11160 556 THQELLAQ-QGRYYQLKQ 572 (574)
T ss_pred CHHHHHhc-CcHHHHHHh
Confidence 99999987 788998875
No 25
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=1.3e-76 Score=746.72 Aligned_cols=555 Identities=25% Similarity=0.378 Sum_probs=470.4
Q ss_pred HHHHhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 46 FYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVT 125 (1178)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 125 (1178)
++.++.+.++.+. .+...++++++..++....|++++.++|......+. .......+.++++.++..++.+++.+
T Consensus 135 ~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~ 209 (694)
T TIGR03375 135 KHWFWSTLKESWP-LYRDVLIASLLINLLALASPLFVMNVYDRVVPNQAF----ETLWVLAIGVALAIVFDFVLKTLRSY 209 (694)
T ss_pred chHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcH----hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444433222 222333344444444555566777888875533221 11222233333445556677888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001041 126 CWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWL 205 (1178)
Q Consensus 126 ~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (1178)
+..+.+.++..++|..+++++++.|+.+ ++ .++|++++|+ +|++.+++.+...+...+..+..++..++++++++|.
T Consensus 210 ~~~~~~~~~~~~l~~~~~~~ll~l~~~~-~~-~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 286 (694)
T TIGR03375 210 FLDVAGKKADLILSAKLFERVLGLRMEA-RP-ASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGP 286 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccc-CC-CChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 8888999999999999999999999998 55 4899999999 7999999998877777777777777777888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 206 LTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGL 285 (1178)
Q Consensus 206 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 285 (1178)
++++.++.+|+++++..++.+..++..++..+..++..+.+.|.++|+++||.|++|+.+.++|.+...+..+...+...
T Consensus 287 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 366 (694)
T TIGR03375 287 LVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRF 366 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888999999998888899999999999999999999999999999999999999888888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 001041 286 AAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKP 365 (1178)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 365 (1178)
.......+..++..+..++.+++|++++..+.++.|.+++++.+......++..+...+..+.....+.+|+.++++.++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~ 446 (694)
T TIGR03375 367 LSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPV 446 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 77666656666666666677888999999999999999888777777777888888888999999999999999998766
Q ss_pred CCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEE
Q 001041 366 EIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 445 (1178)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i 445 (1178)
+.+... .....++..+.|+++||+|+|++. ++++|+|+||+|+|||+++|||+||||||||+++|+|+|+|++|+|.+
T Consensus 447 e~~~~~-~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~i 524 (694)
T TIGR03375 447 ERPEGT-RFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLL 524 (694)
T ss_pred CCCCCC-CCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 532211 111122335679999999999753 357999999999999999999999999999999999999999999999
Q ss_pred CCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCCh
Q 001041 446 DGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSG 525 (1178)
Q Consensus 446 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSg 525 (1178)
||+|+++++.+++|++|+||||+|++|+|||+|||.++.|++++++++++++.++++++++.+|+|++|.+||+|.+|||
T Consensus 525 dg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSg 604 (694)
T TIGR03375 525 DGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSG 604 (694)
T ss_pred CCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCH
Confidence 99999999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChh
Q 001041 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHS 605 (1178)
Q Consensus 526 Gqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~ 605 (1178)
||||||+||||++++|+|+|||||||+||+++++.+.+.+.+..+++|+|+||||+++++.||+|++|++|+++|.|+|+
T Consensus 605 GQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~ 684 (694)
T TIGR03375 605 GQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKD 684 (694)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHhcC
Q 001041 606 KLVED 610 (1178)
Q Consensus 606 ~l~~~ 610 (1178)
||++.
T Consensus 685 eLl~~ 689 (694)
T TIGR03375 685 QVLEA 689 (694)
T ss_pred HHHHH
Confidence 99864
No 26
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=3.6e-76 Score=730.76 Aligned_cols=563 Identities=31% Similarity=0.524 Sum_probs=473.2
Q ss_pred HhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 49 LFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWM 128 (1178)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 128 (1178)
++++.++..+. +++.+++.++..++....++++..+++........ .......+.+++++++..++.++..++..
T Consensus 16 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 90 (582)
T PRK11176 16 LWPTIAPFKAG-LIVAGVALILNAASDTFMLSLLKPLLDDGFGKADR----SVLKWMPLVVIGLMILRGITSFISSYCIS 90 (582)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433332 23333444444445555566777777754432111 11112222233455566677777777778
Q ss_pred HHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001041 129 ITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTL 208 (1178)
Q Consensus 129 ~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 208 (1178)
+.+.+....+|..+++++++.|..+|++. ++|++++|+++|++.+.+.+...+..++..+..+++.++++++++|.+++
T Consensus 91 ~~~~~~~~~lr~~~~~~l~~~~~~~~~~~-~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 169 (582)
T PRK11176 91 WVSGKVVMTMRRRLFGHMMGMPVSFFDKQ-STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSL 169 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCCC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999875 99999999999999999999888888888888889888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 209 VMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAG 288 (1178)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (1178)
++++.+|+.+++..++.+..++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+......
T Consensus 170 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (582)
T PRK11176 170 ILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASS 249 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888889999999999999999999999999999999998888877777666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 001041 289 IGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEID 368 (1178)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 368 (1178)
+......++..+..++.+++|+..+..+.++.|.++.++.+......++..+......+..+..+.+|+.+.++.+++.+
T Consensus 250 ~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 329 (582)
T PRK11176 250 ISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKD 329 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCC
Confidence 55555555555555666777888888899999998877777777777888888888899999999999999887654422
Q ss_pred cCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCe
Q 001041 369 AYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGI 448 (1178)
Q Consensus 369 ~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~ 448 (1178)
... ...++..+.|+++||+|+|++. ++++|+|+||+|++||+++|||+||||||||+++|+|+++|++|+|.+||+
T Consensus 330 ~~~---~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~ 405 (582)
T PRK11176 330 EGK---RVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGH 405 (582)
T ss_pred CCC---cCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCE
Confidence 111 1122234579999999999753 367999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCC-CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH
Q 001041 449 NLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD-ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1178)
Q Consensus 449 ~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGq 527 (1178)
|+++++.+++|++|+||||+|++|++||||||.++.++ +++++++++++.++++++++++|+|+||.+|++|.+|||||
T Consensus 406 ~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGq 485 (582)
T PRK11176 406 DLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQ 485 (582)
T ss_pred EhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHH
Confidence 99999999999999999999999999999999998764 79999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHH
Q 001041 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 607 (1178)
||||+||||++++|+|||||||||+||+++++.+.+.+.+..+++|+|+||||++.++.||+|++|++|+|+|.|+|+++
T Consensus 486 rQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l 565 (582)
T PRK11176 486 RQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAEL 565 (582)
T ss_pred HHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred hcCCCchHHHHHHHH
Q 001041 608 VEDPEGAYSQLIRLQ 622 (1178)
Q Consensus 608 ~~~~~~~~~~~~~~~ 622 (1178)
++. ++.|++++..+
T Consensus 566 ~~~-~~~y~~l~~~~ 579 (582)
T PRK11176 566 LAQ-NGVYAQLHKMQ 579 (582)
T ss_pred HhC-CChHHHHHHHH
Confidence 987 67899988644
No 27
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=2.2e-75 Score=723.81 Aligned_cols=564 Identities=25% Similarity=0.354 Sum_probs=461.4
Q ss_pred HHhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 48 KLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCW 127 (1178)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 127 (1178)
.++.|..+.++ .+++.+++.++..++....|++++.++|......... . .....+++.++++.++..++.++..+..
T Consensus 13 ~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (592)
T PRK10790 13 RLLAYGSPWRK-PLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLP-L-GLVAGLAAAYVGLQLLAAGLHYAQSLLF 89 (592)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-h-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443333 2334555556666666777778888888754322111 1 1111122233344455666777778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001041 128 MITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLT 207 (1178)
Q Consensus 128 ~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 207 (1178)
...+.+...++|..+++++++.|.++|++. ++|++++|+++|++.+++.+...+..++..+..+++.++++++++|.++
T Consensus 90 ~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~-~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 168 (592)
T PRK10790 90 NRAAVGVVQQLRTDVMDAALRQPLSAFDTQ-PVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMA 168 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999999999999999975 9999999999999999999998888888888888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 208 LVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAA 287 (1178)
Q Consensus 208 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (1178)
+++++.+|+.+++..+..+..++..++.++..++..+.+.|.+.|+++||.|+.|+.+.+++.+...+..+...+.....
T Consensus 169 li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (592)
T PRK10790 169 LVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLD 248 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888877777777777777777777788888999999999999999999999999999988777666655544443
Q ss_pred HHH-HHHHHHHHHH-HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 001041 288 GIG-LGMVMLIVFC-SYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKP 365 (1178)
Q Consensus 288 ~~~-~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 365 (1178)
++. ..+..++... ..+++++.| . +..+.++.|.++.++.+......++..+......+..+..+++|+.++++.++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 326 (592)
T PRK10790 249 GFLLRPLLSLFSALILCGLLMLFG-F-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPR 326 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-H-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 332 1112122211 222223333 3 46788999988887777767777888888889999999999999999987654
Q ss_pred CCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEE
Q 001041 366 EIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 445 (1178)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i 445 (1178)
+... . ...+...+.|+++|++|+|++ ++++|+|+||++++||+++|||+||||||||+++|+|+++|++|+|.+
T Consensus 327 ~~~~-~---~~~~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i 400 (592)
T PRK10790 327 QQYG-N---DDRPLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRL 400 (592)
T ss_pred ccCC-C---CccCCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEE
Confidence 3211 1 111223467999999999974 357999999999999999999999999999999999999999999999
Q ss_pred CCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCCh
Q 001041 446 DGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSG 525 (1178)
Q Consensus 446 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSg 525 (1178)
||+|+++++.+++|++|+||||+|++|++||||||.++. +.++++++++++.++++++++.+|+|+||.+|++|.+|||
T Consensus 401 dg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSG 479 (592)
T PRK10790 401 DGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSV 479 (592)
T ss_pred CCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCH
Confidence 999999999999999999999999999999999999997 5899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChh
Q 001041 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHS 605 (1178)
Q Consensus 526 Gqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~ 605 (1178)
||||||+||||++++|+|+|||||||+||+++++.+.+.+++..+++|+|+||||++.++.||+|++|++|++++.|+|+
T Consensus 480 GqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~ 559 (592)
T PRK10790 480 GQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQ 559 (592)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHhcCCCchHHHHHHHHhhc
Q 001041 606 KLVEDPEGAYSQLIRLQEAN 625 (1178)
Q Consensus 606 ~l~~~~~~~~~~~~~~~~~~ 625 (1178)
||++. ++.|+++++.+...
T Consensus 560 ~L~~~-~~~y~~l~~~~~~~ 578 (592)
T PRK10790 560 QLLAA-QGRYWQMYQLQLAG 578 (592)
T ss_pred HHHhC-CCHHHHHHHHHhhh
Confidence 99987 68999998766433
No 28
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=6.3e-76 Score=781.26 Aligned_cols=511 Identities=20% Similarity=0.279 Sum_probs=411.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 001041 109 FVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQL 188 (1178)
Q Consensus 109 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~ 188 (1178)
|++++++..++.++..+.....+.+.+.++|..+++++++.|+.|||+ +++|+++||+++|++.+++.++..+..++..
T Consensus 1004 y~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~-~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~ 1082 (1560)
T PTZ00243 1004 YLGIVLLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDT-TPLGRILNRFSRDIDILDNTLPMSYLYLLQC 1082 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccC-CCccHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 333444444444455555555667788899999999999999999997 5999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHH
Q 001041 189 MATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSN 268 (1178)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~ 268 (1178)
++.+++.++++++.+|.+++++++++.+++.+..++.+..++..+......++..+++.|++.|+++||+|++++.+.++
T Consensus 1083 ~~~~i~~li~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~ 1162 (1560)
T PTZ00243 1083 LFSICSSILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQE 1162 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHH
Confidence 88888888888888875444433333333444445555556666666677888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 269 YKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGG--KLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSA 346 (1178)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~ 346 (1178)
+.+..+...+..........+......++..+..++..+++. .+...+..+.+.+..++.+......++..+...+..
T Consensus 1163 ~~~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~ 1242 (1560)
T PTZ00243 1163 ALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVAT 1242 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988887776655543333322222222222222112222222 122233456666655555556666778888888889
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcC--------------------------CCCCc---ccCCCcccEEEEeEEEECCCCC
Q 001041 347 FGAGQAAAFKMFETINRKPEIDAY--------------------------DTKGK---ILDDIRGDIELRDVYFSYPARP 397 (1178)
Q Consensus 347 ~~~~~~~~~r~~~~~~~~~~~~~~--------------------------~~~~~---~~~~~~~~i~~~~~~~~y~~~~ 397 (1178)
+..++.+.+|+.++++..++.+.. ....+ +.++..|.|+|+||+|+|++.
T Consensus 1243 le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~- 1321 (1560)
T PTZ00243 1243 VEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG- 1321 (1560)
T ss_pred HHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC-
Confidence 999999999999998643321100 00000 112235789999999999753
Q ss_pred CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHH
Q 001041 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIK 477 (1178)
Q Consensus 398 ~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~ 477 (1178)
.+++|+|+||+|+|||++||||+||||||||+++|+|+++|++|+|.|||+|+++++++++|++|+||||||.||+||||
T Consensus 1322 ~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIr 1401 (1560)
T PTZ00243 1322 LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVR 1401 (1560)
T ss_pred CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHH
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccC-CCEEEEeCCCCCCCHH
Q 001041 478 DNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD-PRILLLDEATSALDAE 556 (1178)
Q Consensus 478 ~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~-~~illlDe~ts~lD~~ 556 (1178)
|||+.+ .++++++++++++.+++++++..+|+|+||.+||+|.|||||||||||||||++++ |+|||||||||+||++
T Consensus 1402 eNIdp~-~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~ 1480 (1560)
T PTZ00243 1402 QNVDPF-LEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPA 1480 (1560)
T ss_pred HHhCcc-cCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHH
Confidence 999964 46899999999999999999999999999999999999999999999999999996 8999999999999999
Q ss_pred hHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHHH
Q 001041 557 SEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622 (1178)
Q Consensus 557 ~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 622 (1178)
+++.|++.|++.++++|+|+||||++++.+||+|+||++|+|+|.|+|+||++++++.|+++++.+
T Consensus 1481 te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~ 1546 (1560)
T PTZ00243 1481 LDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEAL 1546 (1560)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999987688999998754
No 29
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.5e-76 Score=785.73 Aligned_cols=570 Identities=19% Similarity=0.260 Sum_probs=428.0
Q ss_pred cccchHHHHhHhhchhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 001041 41 TESVPFYKLFTFADSAD-TALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIA 119 (1178)
Q Consensus 41 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 119 (1178)
.+.+++..|.+|.+... +.++++.+++.++..+......+|+..|.+..... . .....+...|++++++..++
T Consensus 893 ~g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~--~----~~~~~~l~~y~~l~~~~~~~ 966 (1495)
T PLN03232 893 TGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQSTPK--S----YSPGFYIVVYALLGFGQVAV 966 (1495)
T ss_pred cCcccHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC--C----CCcchHHHHHHHHHHHHHHH
Confidence 34556666666665432 22222222333333333334445555554421100 0 00123445566777777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 120 SFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIA 199 (1178)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (1178)
.+++.++..+.+.+++.++|.+++++++++|++||++ +++|+++||+++|++.+++.++..+..++..++.+++.++++
T Consensus 967 ~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~-~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~ 1045 (1495)
T PLN03232 967 TFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHT-NPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALI 1045 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCc-CCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888999999999999999999999999997 599999999999999999999998888888888777777776
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHH
Q 001041 200 FIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKS 279 (1178)
Q Consensus 200 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~ 279 (1178)
+.+.+...++++++..++++...++.+..++..+......++..+++.|+++|+++||+|++++.+.+++.+..+...+.
T Consensus 1046 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~ 1125 (1495)
T PLN03232 1046 GTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRF 1125 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence 66665333222222222222222333334445555566778889999999999999999999998888777766655544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCC----C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 280 GVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILE-EGY----N-GGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAA 353 (1178)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~----~-~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~ 353 (1178)
.........+.......+ ..++.++.+...+.. +.. . .+.+..++.+......++.++...+..+..+..+
T Consensus 1126 ~~~~~~~~~wl~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s 1202 (1495)
T PLN03232 1126 TLANTSSNRWLTIRLETL---GGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNS 1202 (1495)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332222211111111111 111111112222221 211 1 1111112233333444666777788889999999
Q ss_pred HHHHHHHhccCCCCCcCCCC--CcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHH
Q 001041 354 AFKMFETINRKPEIDAYDTK--GKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISL 431 (1178)
Q Consensus 354 ~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~ 431 (1178)
.+|+.++++.++|.+..... .++.++.+|.|+|+||+|+|+.+ .+++|+|+||+|+|||++|||||||||||||+++
T Consensus 1203 ~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~l 1281 (1495)
T PLN03232 1203 VERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNA 1281 (1495)
T ss_pred HHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 99999999876653321111 12224556889999999999643 3579999999999999999999999999999999
Q ss_pred HhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCC
Q 001041 432 IERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQG 511 (1178)
Q Consensus 432 l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 511 (1178)
|+|+++|++|+|.|||+|+++++++++|++|+||||||.+|+|||||||+++. ++++++++++++.++++++++++|+|
T Consensus 1282 L~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~-~~sdeei~~al~~a~l~~~I~~lp~G 1360 (1495)
T PLN03232 1282 LFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS-EHNDADLWEALERAHIKDVIDRNPFG 1360 (1495)
T ss_pred HhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC-CCCHHHHHHHHHHcCCHHHHHhCcCC
Confidence 99999999999999999999999999999999999999999999999999875 68999999999999999999999999
Q ss_pred ccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEE
Q 001041 512 IDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIA 591 (1178)
Q Consensus 512 ~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~ 591 (1178)
+||.+||+|.+||||||||+|||||++++|+|||||||||+||++|++.|++.|++.++++|+|+||||++++.+||+|+
T Consensus 1361 Ldt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIl 1440 (1495)
T PLN03232 1361 LDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKIL 1440 (1495)
T ss_pred CCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCEEEEecChhHHhcCCCchHHHHHHHH
Q 001041 592 VIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622 (1178)
Q Consensus 592 ~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 622 (1178)
||++|+|+|.|+|+||++++++.|+++++.+
T Consensus 1441 VL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~ 1471 (1495)
T PLN03232 1441 VLSSGQVLEYDSPQELLSRDTSAFFRMVHST 1471 (1495)
T ss_pred EEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 9999999999999999998667999998754
No 30
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=7e-75 Score=718.74 Aligned_cols=562 Identities=33% Similarity=0.529 Sum_probs=487.3
Q ss_pred HhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 49 LFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWM 128 (1178)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 128 (1178)
++++.++. +..+++++++.++.+++.+..+++++.+++........ .........++++.++..++.++..+...
T Consensus 5 l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 79 (571)
T TIGR02203 5 LWSYVRPY-KAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRDR----SVLWWVPLVVIGLAVLRGICSFVSTYLLS 79 (571)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444332 33455666677777777888888888888754432211 12222233444556667778888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001041 129 ITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTL 208 (1178)
Q Consensus 129 ~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 208 (1178)
+.+.++..++|..+++++++.|.++|++. +.|++++|+++|++.+++.+...+..++..+..+++.++++++++|.+++
T Consensus 80 ~~~~~~~~~lr~~l~~~~~~~~~~~~~~~-~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~ 158 (571)
T TIGR02203 80 WVSNKVVRDIRVRMFEKLLGLPVSFFDRQ-PTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTL 158 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 89999999999999999999999999874 89999999999999999999988999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 209 VMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAG 288 (1178)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (1178)
++++.+|+++++..++.+..++..++..+..++..+.+.|.++|+++||.++.++.+.+++.+..++..+...+.....+
T Consensus 159 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (571)
T TIGR02203 159 IVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGS 238 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888999998888888899999999999999999999999999999999999988888877777666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 001041 289 IGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEID 368 (1178)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 368 (1178)
....+..++..+..++.+++|+.++..+.++.|.++++..++.....++..+......+..++.+.+|+.++++.+++.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~ 318 (571)
T TIGR02203 239 ISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKD 318 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 66555556666666777788888888999999999888877777788888888889999999999999999997755432
Q ss_pred cCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCe
Q 001041 369 AYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGI 448 (1178)
Q Consensus 369 ~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~ 448 (1178)
... ....+..+.|+++||+|+|+++ ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||+
T Consensus 319 ~~~---~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~ 394 (571)
T TIGR02203 319 TGT---RAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGH 394 (571)
T ss_pred CCC---CCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCE
Confidence 211 1112234579999999999754 357999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCC-CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH
Q 001041 449 NLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKD-DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1178)
Q Consensus 449 ~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGq 527 (1178)
++++++.+++|++++||||+|++|+||+||||.++.+ +.++++++++++.+++++++.++|+|+||.+|++|.+|||||
T Consensus 395 ~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq 474 (571)
T TIGR02203 395 DLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQ 474 (571)
T ss_pred eHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHH
Confidence 9999999999999999999999999999999999986 789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHH
Q 001041 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 607 (1178)
||||+||||++++|+|+|||||||+||+++++.+.+.+++..+++|+|+||||++.+..||+|++|++|++++.|+|+++
T Consensus 475 rQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l 554 (571)
T TIGR02203 475 RQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNEL 554 (571)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHH
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred hcCCCchHHHHHHH
Q 001041 608 VEDPEGAYSQLIRL 621 (1178)
Q Consensus 608 ~~~~~~~~~~~~~~ 621 (1178)
++. ++.|++++..
T Consensus 555 ~~~-~~~~~~~~~~ 567 (571)
T TIGR02203 555 LAR-NGLYAQLHNM 567 (571)
T ss_pred HHc-CCHHHHHHHH
Confidence 987 5778877653
No 31
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1e-74 Score=728.73 Aligned_cols=567 Identities=28% Similarity=0.408 Sum_probs=478.2
Q ss_pred hHHHHhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 45 PFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQV 124 (1178)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 124 (1178)
.+..++++.++.+. .+...++++++..+.....|++++.++|......+. .......+.++++.++..++.+++.
T Consensus 126 ~~~~~~~~~~~~~~-~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~----~~l~~l~~~~~~~~~~~~~~~~l~~ 200 (694)
T TIGR01846 126 GFSWFIPAIIRYRK-QFREVLLISLALQLFALVTPLLFQVVIDKVLVHRGL----STLSVLALAMLAVAIFEPALGGLRT 200 (694)
T ss_pred cHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCh----hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445544433222 222233333333344445556777888876532211 1222333444455556677888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001041 125 TCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGW 204 (1178)
Q Consensus 125 ~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (1178)
+.....+.+...++|..+++++++.|+.+|++. ++|++++|+ +|++.+++.+...+...+..+.+++..++++++++|
T Consensus 201 ~~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~~~-~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 278 (694)
T TIGR01846 201 YLFAHLTSRIDVELGARLYRHLLGLPLGYFESR-RVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSP 278 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHcCCC-CHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999999999999999999975 999999999 699999999887777777666666666788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 205 LLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEG 284 (1178)
Q Consensus 205 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 284 (1178)
.+++++++.+|+++++..++.+..++..++..+..++..+.+.|.++|+++||++|.|+.+.++|.+...+..+...+..
T Consensus 279 ~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 358 (694)
T TIGR01846 279 TLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVT 358 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988899988888888888888888888888899999999999999999999999999999999888887777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 001041 285 LAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRK 364 (1178)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~ 364 (1178)
...+.......++..+..++.+++|.+++..+.++.|.++++..+......++..+......+..+..+.+|+.++++.+
T Consensus 359 ~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~ 438 (694)
T TIGR01846 359 NLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSP 438 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 76666655556666666777788999999999999999988777777777788888888999999999999999999776
Q ss_pred CCCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEE
Q 001041 365 PEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 444 (1178)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~ 444 (1178)
++.... .....+...+.|+++||+|+|++. ++++|+|+||+|+|||+++|||+||||||||+++|+|+++|++|+|.
T Consensus 439 ~e~~~~--~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~ 515 (694)
T TIGR01846 439 TEPRSA--GLAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVL 515 (694)
T ss_pred CCccCC--CCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 543221 111122335679999999999743 35799999999999999999999999999999999999999999999
Q ss_pred ECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCC
Q 001041 445 IDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLS 524 (1178)
Q Consensus 445 i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lS 524 (1178)
+||+|+++++.+++|++|+||||+|++|++||+|||.++.|+.++++++++|+.+++++++..+|+|+||.+|++|.+||
T Consensus 516 idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LS 595 (694)
T TIGR01846 516 VDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLS 595 (694)
T ss_pred ECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCC
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecCh
Q 001041 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTH 604 (1178)
Q Consensus 525 gGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 604 (1178)
||||||++||||++++|+|||||||||+||+++++.+.+.+++..+++|+|+||||+++++.||+|++|++|++++.|+|
T Consensus 596 gGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~ 675 (694)
T TIGR01846 596 GGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRH 675 (694)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred hHHhcCCCchHHHHHHHH
Q 001041 605 SKLVEDPEGAYSQLIRLQ 622 (1178)
Q Consensus 605 ~~l~~~~~~~~~~~~~~~ 622 (1178)
++++++ ++.|+++++.+
T Consensus 676 ~~l~~~-~~~y~~l~~~~ 692 (694)
T TIGR01846 676 EELLAL-QGLYARLWQQQ 692 (694)
T ss_pred HHHHHc-CChHHHHHHhh
Confidence 999987 68899988643
No 32
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.2e-75 Score=647.56 Aligned_cols=551 Identities=27% Similarity=0.395 Sum_probs=441.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 65 SIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLK 144 (1178)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~ 144 (1178)
+++.+.+.+..-..|..+...++..................+..|.+..++..++..++...+.+..++.....-++++.
T Consensus 36 l~~l~~aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~ 115 (591)
T KOG0057|consen 36 LGLLLGAKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFR 115 (591)
T ss_pred HHHHHhhhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555556667777777553111111122223344556677778888999999999999999999999999999
Q ss_pred HHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 001041 145 TILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLG-GFLIAFIKGWLLTLVMLSSIPLLAMSGGV 223 (1178)
Q Consensus 145 ~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~l~~~~~~~~~~~~~~~ 223 (1178)
+.++.++++|-+. .+|.+.+.+.+-...|...+.-.+..++..++.+.. ...+..-.+...+++++..+..+..+...
T Consensus 116 ~~~~ld~~~~~~~-~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~ 194 (591)
T KOG0057|consen 116 HLMSLDLSFFLSR-GTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIV 194 (591)
T ss_pred HHHhhhHHhhcCC-CcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEe
Confidence 9999999999875 899999999999999888877666666555443322 22334445555566666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 224 MAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYA 303 (1178)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (1178)
...+..+..++..++.++..+.+-+.|.|-.+||.||-|+.+.++|.....+..+...+.....++....-..+..+..+
T Consensus 195 ~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~ 274 (591)
T KOG0057|consen 195 VTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALT 274 (591)
T ss_pred ehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHH
Confidence 66777777788888999999999999999999999999999999999999888887766655544433222233333334
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCCCCcccCCCccc
Q 001041 304 LSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGD 383 (1178)
Q Consensus 304 ~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (1178)
...+.+..-+.++.++.+.++.+.....++..++..+......+.++..-+...+........+ .....+....++.
T Consensus 275 ~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i---~~~~~~i~~~~~~ 351 (591)
T KOG0057|consen 275 FIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDI---QEAALPIELFGGS 351 (591)
T ss_pred HHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhh---hhccCCcccCCCc
Confidence 4444555556677889888877666666777777776666666666666555554433221111 1111223334567
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
|+|+||+|+|+. ++++|+++||+|++||+|||||+|||||||++++|+|+++ ++|+|+|||+|+++++++.+|+.||
T Consensus 352 I~F~dV~f~y~~--k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig 428 (591)
T KOG0057|consen 352 IEFDDVHFSYGP--KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIG 428 (591)
T ss_pred EEEEeeEEEeCC--CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhhee
Confidence 999999999973 4579999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred EEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCE
Q 001041 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1178)
Q Consensus 464 ~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~i 543 (1178)
|||||..||++||-+||.+|.+.++++++.++|+.++++|.+.++|+|++|.+||+|..|||||||||+||||+++||+|
T Consensus 429 ~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~I 508 (591)
T KOG0057|consen 429 VVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPI 508 (591)
T ss_pred EeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHHHh
Q 001041 544 LLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQE 623 (1178)
Q Consensus 544 lllDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 623 (1178)
+++|||||+||.+||+.+.+.+.+...+||+|+|.||++++++||+|+++|+|++.|.|+|+||++ +.+.|+.++..|.
T Consensus 509 l~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~w~~~~ 587 (591)
T KOG0057|consen 509 LLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA-PSELYADLWTTQT 587 (591)
T ss_pred EEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh-hhhHHHHHhcccc
Confidence 999999999999999999999999889999999999999999999999999999999999999999 5889999886543
No 33
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=1.3e-73 Score=706.84 Aligned_cols=564 Identities=29% Similarity=0.416 Sum_probs=461.9
Q ss_pred HHHHhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 46 FYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVT 125 (1178)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 125 (1178)
+++++++.++.. ..+.+.+++.++..++....+++++.++|...... . .....+.+++++++..+..++...
T Consensus 7 ~~~l~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~ 78 (588)
T PRK13657 7 YARVLQYLGAEK-RLGILLAVANVLLAAATFAEPILFGRIIDAISGKG---D----IFPLLAAWAGFGLFNIIAGVLVAR 78 (588)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---c----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555554332 23334444445555555566667888888654321 1 111112222223333333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001041 126 CWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWL 205 (1178)
Q Consensus 126 ~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (1178)
...+...+...+++..+++++++.|..+|++. ++|++++|+++|++.+.+.+...+..++..+..+++.++++++++|.
T Consensus 79 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~-~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (588)
T PRK13657 79 HADRLAHRRRLAVLTEYFERIIQLPLAWHSQR-GSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWR 157 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHCcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666677799999999999999874 99999999999999998887777777777777777777888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 206 LTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGL 285 (1178)
Q Consensus 206 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 285 (1178)
+++++++++|+.+++..++.+..++..++..+..++..+.+.|.+.|+++||.|+.++.+.+++.+...+..+...+...
T Consensus 158 l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (588)
T PRK13657 158 LSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLS 237 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888888888888888888888888889999999999999999999999999999999988887777666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 001041 286 AAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKP 365 (1178)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 365 (1178)
..++...+..++.....++.+++|.+++..+.++.|.+++++.++.....++..+...+..+..+..+..|+.+.++.++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~ 317 (588)
T PRK13657 238 WWALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVP 317 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 55555545555555556667778888899999999999888777777777888888888888889999999998887654
Q ss_pred CCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEE
Q 001041 366 EIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 445 (1178)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i 445 (1178)
+.+... ......+..+.|+++||+|+|+++ +++|+|+||+++|||+++|+|+||||||||+++|+|+++|++|+|.+
T Consensus 318 ~~~~~~-~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i 394 (588)
T PRK13657 318 DVRDPP-GAIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILI 394 (588)
T ss_pred ccCCCC-CCCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEE
Confidence 322111 111112234579999999999742 46999999999999999999999999999999999999999999999
Q ss_pred CCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCCh
Q 001041 446 DGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSG 525 (1178)
Q Consensus 446 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSg 525 (1178)
||.|+++++.+++|++|+||||+|++|++||||||.++.|+.++++++.+++.+++++++.++|+|+||.+|++|.+|||
T Consensus 395 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSg 474 (588)
T PRK13657 395 DGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSG 474 (588)
T ss_pred CCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCH
Confidence 99999999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChh
Q 001041 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHS 605 (1178)
Q Consensus 526 Gqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~ 605 (1178)
||||||+||||++++|+|+|||||||+||+++++.+.+.+++..+++|+|+||||++.++.||+|++|++|++++.|+|+
T Consensus 475 Gq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~ 554 (588)
T PRK13657 475 GERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFD 554 (588)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999999887899999999999999999999999999999999999
Q ss_pred HHhcCCCchHHHHHHHH
Q 001041 606 KLVEDPEGAYSQLIRLQ 622 (1178)
Q Consensus 606 ~l~~~~~~~~~~~~~~~ 622 (1178)
++++. ++.|.+++..+
T Consensus 555 ~l~~~-~~~y~~l~~~~ 570 (588)
T PRK13657 555 ELVAR-GGRFAALLRAQ 570 (588)
T ss_pred HHHHC-CChHHHHHHHh
Confidence 99977 68899888654
No 34
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=2e-74 Score=706.36 Aligned_cols=524 Identities=23% Similarity=0.328 Sum_probs=431.0
Q ss_pred HhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 49 LFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWM 128 (1178)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 128 (1178)
++++.++.++ .+++.+++.++..++....|+++++++|....... .. ........++++.++..++.++..++..
T Consensus 4 l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (529)
T TIGR02868 4 ILPLLQPRTR-RLVVAILLGALALGSAVALLGVSAWLISRAAEMPP---VL-YLSVAAVAVRAFGIGRAVFRYLERLVGH 78 (529)
T ss_pred HHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch---hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443332 23344444555555555666778888886542211 00 0111111122344556677778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001041 129 ITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTL 208 (1178)
Q Consensus 129 ~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 208 (1178)
..+.++..++|.++++++++.|..+|++. ++|++++|+++|++.+++.+...+..++..+..+++.++++++++|.+++
T Consensus 79 ~~~~~~~~~lr~~~~~~ll~~~~~~~~~~-~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 157 (529)
T TIGR02868 79 DAALRSLGRLRVRVYDRLARLALAGRRRF-QTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAAL 157 (529)
T ss_pred HHHHHHHHHHHHHHHHHhhccCccccccC-ChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 88899999999999999999999999874 99999999999999999999888888888888888888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 209 VMLSSIPLLAMSGGVMAIM-ISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAA 287 (1178)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (1178)
++++.+|++.++...+.+. .++..++.++..++..+.+.|.++|+++||+|++|+.+.+++.+...+..+...+.....
T Consensus 158 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (529)
T TIGR02868 158 VLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARAT 237 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887777776655444433 455556667778899999999999999999999999999999999888888777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 001041 288 GIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEI 367 (1178)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 367 (1178)
+....+..++..+..++.+++|++++..+.++.+.+++++.+......++..+......+..+..+.+|+.++++.+++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~ 317 (529)
T TIGR02868 238 GLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPR 317 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 66666666666666667778888888899999998888776666666777777778888999999999999999776543
Q ss_pred CcCCCC-CcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEEC
Q 001041 368 DAYDTK-GKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID 446 (1178)
Q Consensus 368 ~~~~~~-~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~ 446 (1178)
+..+.. ....++..+.|+++||+|+|+++ +++|+|+||+|+|||+++||||||||||||+++|+|+++|++|+|.+|
T Consensus 318 ~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~ 395 (529)
T TIGR02868 318 PEGVVPAAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLD 395 (529)
T ss_pred CCCCCCCCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 221110 11112234579999999999753 369999999999999999999999999999999999999999999999
Q ss_pred CeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChH
Q 001041 447 GINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1178)
Q Consensus 447 g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgG 526 (1178)
|+|++++ .+++|++|+||||+|++|++||||||.+|.|+.++++++++++.+++++++.++|+|+||.+||+|.+||||
T Consensus 396 g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGG 474 (529)
T TIGR02868 396 GVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGG 474 (529)
T ss_pred CEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHH
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCc
Q 001041 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRL 581 (1178)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~ 581 (1178)
||||||||||++++|+|||||||||+||+++++.+++.+++..+++|+|+||||+
T Consensus 475 QrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 475 ERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 9999999999999999999999999999999999999999988899999999995
No 35
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-77 Score=649.36 Aligned_cols=505 Identities=29% Similarity=0.420 Sum_probs=427.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 116 SGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGG 195 (1178)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~ 195 (1178)
.+++.-++++.|.....-+.+++-..+++|+.+.+++|+-++ .+|+++.-+.+-.+.+. .+...+..+.-.+.-+...
T Consensus 272 sG~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~r-rtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va 349 (790)
T KOG0056|consen 272 SGFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLNR-RTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVA 349 (790)
T ss_pred ccchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeecc-cccceeehhccCcchhh-HHHHHHhhcccHHHHhhhh
Confidence 345566677778778888888999999999999999999875 89999999988777765 4444444444444443333
Q ss_pred HHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHH
Q 001041 196 FLI-AFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLV 274 (1178)
Q Consensus 196 ~~~-~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~ 274 (1178)
++. ...++|+.++++++++.++..+...+.....+.+++....+.+....-.+++-+..|||-|++|+.+.++|++...
T Consensus 350 ~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil 429 (790)
T KOG0056|consen 350 MVYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAIL 429 (790)
T ss_pred hhhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHH
Confidence 322 3346677888777777666655555555566666676777777788888999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 275 TAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAA 354 (1178)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~ 354 (1178)
+..+..++......+...+-+.+.....+...++..+.+..+..+.|..+.+..+.+++..++++.......++.+..-.
T Consensus 430 ~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDm 509 (790)
T KOG0056|consen 430 KYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDM 509 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhH
Confidence 88877766554433333232333333333334444566667788999887777888888889999888899999999999
Q ss_pred HHHHHHhccCCCCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhc
Q 001041 355 FKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 355 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g 434 (1178)
+++++.+.+++|..+.+. .++....+|.|+|+||+|.|+ +++|+|+||||+++||+.+|+|||||+||||++++|+|
T Consensus 510 Enmfdllkee~eVvd~P~-a~pl~~~~G~i~fsnvtF~Y~--p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfR 586 (790)
T KOG0056|consen 510 ENMFDLLKEEPEVVDLPG-APPLKVTQGKIEFSNVTFAYD--PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFR 586 (790)
T ss_pred HHHHHHhhcCchhhcCCC-CCCccccCCeEEEEEeEEecC--CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHH
Confidence 999999998887654332 234445679999999999996 46799999999999999999999999999999999999
Q ss_pred cCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccc
Q 001041 435 FYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDT 514 (1178)
Q Consensus 435 ~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t 514 (1178)
+++.++|+|.|||+|++.++.+.+|++||+||||..+||+||.+||.+++|.+++|++.++++++++||.|..+|+|++|
T Consensus 587 ffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t 666 (790)
T KOG0056|consen 587 FFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNT 666 (790)
T ss_pred HhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEe
Q 001041 515 LVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIH 594 (1178)
Q Consensus 515 ~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~ 594 (1178)
.|||+|-.||||+|||+|+||+++++|.|++|||+|||||.+||+.||.++.++.++||.|+|+||++++-+||.|+|++
T Consensus 667 ~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~ 746 (790)
T KOG0056|consen 667 RVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVIS 746 (790)
T ss_pred hhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecChhHHhcCCCchHHHHHHHHhhc
Q 001041 595 RGKIVEKGTHSKLVEDPEGAYSQLIRLQEAN 625 (1178)
Q Consensus 595 ~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~ 625 (1178)
+|+|+|.|+|+||+.+.+|.|++|++.|...
T Consensus 747 ~G~IvErG~HeeLl~rdgG~Ya~MWq~qqa~ 777 (790)
T KOG0056|consen 747 NGRIVERGRHEELLKRDGGAYADMWQAQQAM 777 (790)
T ss_pred CCeEeecCcHHHHHhccCCcHHHHHHHHHhc
Confidence 9999999999999999899999999866543
No 36
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=1.4e-73 Score=707.39 Aligned_cols=567 Identities=34% Similarity=0.556 Sum_probs=470.8
Q ss_pred HHhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 48 KLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCW 127 (1178)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 127 (1178)
.++++.++..+ .+.+.+++.++..++....|++++.++|......+. .........++++.++..++.+++.+..
T Consensus 8 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (576)
T TIGR02204 8 ALWPFVRPYRG-RVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSS----GLLNRYFAFLLVVALVLALGTAARFYLV 82 (576)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443322 233444455555666666777888888864322111 1122222223333444556667777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001041 128 MITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLT 207 (1178)
Q Consensus 128 ~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 207 (1178)
...+.+....+|..+++++++.|.++|++. +.|++++|+++|++.+++.+...+..++..+..+++.+++++.++|.++
T Consensus 83 ~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~-~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 161 (576)
T TIGR02204 83 TWLGERVVADIRRAVFAHLISLSPSFFDKN-RSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLT 161 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHccC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 888899999999999999999999999874 8999999999999999999888888888888888888888999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 208 LVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAA 287 (1178)
Q Consensus 208 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (1178)
+++++.+|+++++..++.+..++..++.++..++..+.+.|.++|+++||.+++|+.+..++.+..++......+.....
T Consensus 162 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (576)
T TIGR02204 162 SLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTR 241 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888999999999999999999999999999999988887766655555444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 001041 288 GIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEI 367 (1178)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 367 (1178)
.+......++..+..++.+++|++++..+.++.|.++++..+......++..+...+..+..+..+.+|+.++++.+++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~ 321 (576)
T TIGR02204 242 ALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDI 321 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcC
Confidence 44333333344455556677888888899999999888777777777788888889999999999999999998765542
Q ss_pred CcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECC
Q 001041 368 DAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447 (1178)
Q Consensus 368 ~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g 447 (1178)
+..........+..+.|+++||+|+||++.++++|+|+||+++|||+++|+|+||||||||+++|+|+++|++|+|.+||
T Consensus 322 ~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g 401 (576)
T TIGR02204 322 KAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDG 401 (576)
T ss_pred CCCCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECC
Confidence 21111111112234579999999999864336799999999999999999999999999999999999999999999999
Q ss_pred eecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH
Q 001041 448 INLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1178)
Q Consensus 448 ~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGq 527 (1178)
+|+.+++.+++|++++|+||+|++|++||||||.++.|+.++++++++++.+++.+++..+|+|++|.+|++|.+|||||
T Consensus 402 ~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq 481 (576)
T TIGR02204 402 VDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQ 481 (576)
T ss_pred EEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHH
Confidence 99999999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHH
Q 001041 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 607 (1178)
|||++||||++++|++||||||||+||+++++.+.+.+++..+++|+|+||||++.+..||+|++|++|++++.|+|+++
T Consensus 482 ~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l 561 (576)
T TIGR02204 482 RQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAEL 561 (576)
T ss_pred HHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHH
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred hcCCCchHHHHHHH
Q 001041 608 VEDPEGAYSQLIRL 621 (1178)
Q Consensus 608 ~~~~~~~~~~~~~~ 621 (1178)
.++ ++.|++++..
T Consensus 562 ~~~-~~~~~~l~~~ 574 (576)
T TIGR02204 562 IAK-GGLYARLARL 574 (576)
T ss_pred HHc-CChHHHHHhh
Confidence 886 6788887653
No 37
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.1e-73 Score=702.49 Aligned_cols=540 Identities=25% Similarity=0.374 Sum_probs=454.6
Q ss_pred HHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhh
Q 001041 76 PLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFD 155 (1178)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~ 155 (1178)
...|++++.++|........ ......+...++++.++..++.++..+.....+.+...++|..+++++++.|+++|+
T Consensus 12 ~~~p~~~~~iid~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~ 88 (569)
T PRK10789 12 LIPPKVVGIIVDGVTEQHMT---TGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYL 88 (569)
T ss_pred HHHHHHHHHHHHHhccCCcc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHc
Confidence 34455777778865422111 111222233333344455666777777777788999999999999999999999998
Q ss_pred ccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 156 NETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIA-FIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSR 234 (1178)
Q Consensus 156 ~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (1178)
+. ++|++++|+++|++.+...+...+..++..+..+++.++++ ++++|.+++++++.+|+++++...+.+...+..++
T Consensus 89 ~~-~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~ 167 (569)
T PRK10789 89 RH-RTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKL 167 (569)
T ss_pred CC-CHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 74 99999999999999999877777777777655555554444 58999999988888899888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 235 GQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLIL 314 (1178)
Q Consensus 235 ~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 314 (1178)
.++..++..+.+.|.++|+++||+|++|+.+.+++.+...+..+...+.....+........+..+..++.+++|.+++.
T Consensus 168 ~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~ 247 (569)
T PRK10789 168 AQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVV 247 (569)
T ss_pred HHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999999998887777766666555554444444444555566778888888
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCCCCcccCCCcccEEEEeEEEECC
Q 001041 315 EEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYP 394 (1178)
Q Consensus 315 ~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~ 394 (1178)
.+.++.|.++++..+......++..+...+..+..+..+.+|+.++++.+++.+... ...++..+.|+++|++|+|+
T Consensus 248 ~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~---~~~~~~~~~I~~~~v~~~y~ 324 (569)
T PRK10789 248 NGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGS---EPVPEGRGELDVNIRQFTYP 324 (569)
T ss_pred cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC---CCCCCCCCcEEEEEEEEECC
Confidence 999999999888777777777888888888899999999999999987755422111 11122346799999999997
Q ss_pred CCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcc
Q 001041 395 ARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG 474 (1178)
Q Consensus 395 ~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ 474 (1178)
.. ++++|+|+||+++|||+++|+||||||||||+++|+|+++|++|+|.+||+++++++.+++|++++||||+|++|++
T Consensus 325 ~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ 403 (569)
T PRK10789 325 QT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSD 403 (569)
T ss_pred CC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccc
Confidence 53 35799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCC
Q 001041 475 SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD 554 (1178)
Q Consensus 475 ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD 554 (1178)
|++|||.++.++.++++++.+++.+++++++.++|+|++|.+|++|.+||||||||++||||++++|+|+|||||||+||
T Consensus 404 ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD 483 (569)
T PRK10789 404 TVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVD 483 (569)
T ss_pred cHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCC
Confidence 99999999988889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHHHhh
Q 001041 555 AESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEA 624 (1178)
Q Consensus 555 ~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 624 (1178)
+++++.+.+.+++..+++|+|+||||++.++.||+|++|++|++++.|+|++++++ ++.|++++..++.
T Consensus 484 ~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~~~ 552 (569)
T PRK10789 484 GRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQ-SGWYRDMYRYQQL 552 (569)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHc-CChHHHHHHHhhh
Confidence 99999999999988889999999999999999999999999999999999999987 6889998876543
No 38
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-73 Score=638.10 Aligned_cols=505 Identities=23% Similarity=0.363 Sum_probs=423.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 001041 109 FVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQL 188 (1178)
Q Consensus 109 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~ 188 (1178)
.=++|+...+..|+.....+-...++...+|.++|+++...+..-.... .+|+++||+..|++.+|+.+-..+.+++..
T Consensus 64 VR~~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~-r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a 142 (573)
T COG4987 64 VRGLAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRY-RSGDLLNRLVADVDALDNLYLRVIAPAVVA 142 (573)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhc-ChHhHHHHHHhhHHHHhhHHHHHHhhHHHH
Confidence 3367888889999999988888899999999999999999888877764 899999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHH
Q 001041 189 MATFLGGFLIAFIKGWLLTLVMLSSIPLL-AMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMS 267 (1178)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~ 267 (1178)
+..+.+..+...+++|.+++.+...+.+. +++...+.+.-++..++....++...+++.|.++|....+.||.++.+..
T Consensus 143 ~~~~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~ 222 (573)
T COG4987 143 LVLIAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRT 222 (573)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHH
Confidence 87777777777778888776555444433 33444455556666667777888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 001041 268 NYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYA-LSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEAS-PCLS 345 (1178)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~-~~~~ 345 (1178)
.+.+......+...+...+.++......++.....+ ..+|.+.. ...|..+.......++.++....++..+. ..+.
T Consensus 223 ~l~~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~-~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~ 301 (573)
T COG4987 223 ALEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQ-VGAGALAQPGAALALLVIFAALEAFEPLAPGAFQ 301 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHH
Confidence 999988888888777777777766665554444333 44555432 22334442222222222233333333333 3457
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcH
Q 001041 346 AFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGK 425 (1178)
Q Consensus 346 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGK 425 (1178)
...+...++.|+.+..+++++...++. +.+...+ .++++||+|+||++ ++++|+|+||++++||++||+|+|||||
T Consensus 302 ~lgq~~~Sa~Rl~~i~~q~~e~~~~~~--~~~~~~~-~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGK 377 (573)
T COG4987 302 HLGQVIASARRLNDILDQKPEVTFPDE--QTATTGQ-ALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGK 377 (573)
T ss_pred HhhHHHHHHHHHhhhccCCcccCCCcc--ccCCccc-eeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCH
Confidence 778888999999999988877544311 1111112 69999999999875 4689999999999999999999999999
Q ss_pred HHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHH
Q 001041 426 STVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFI 505 (1178)
Q Consensus 426 Stl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i 505 (1178)
|||+++|.|.++|++|+|.++|.++..++.+.+|+.|++++|.+++|++|+|||+.+++|+++||+++++++.+++++.+
T Consensus 378 STllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~ 457 (573)
T COG4987 378 STLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLL 457 (573)
T ss_pred HHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhh
Q 001041 506 DKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR 585 (1178)
Q Consensus 506 ~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~ 585 (1178)
++.|+|++|.+||+|.+||||||||++|||++++|++++||||||.+||+.||+++.+.+.+..++||+|+||||+..++
T Consensus 458 ~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le 537 (573)
T COG4987 458 ESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLE 537 (573)
T ss_pred HhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHH
Q 001041 586 NADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIR 620 (1178)
Q Consensus 586 ~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 620 (1178)
.||+|+|||+|+++|+|+|.+|+++ ++.|.++++
T Consensus 538 ~~drIivl~~Gkiie~G~~~~Ll~~-~g~~~~l~q 571 (573)
T COG4987 538 RMDRIIVLDNGKIIEEGTHAELLAN-NGRYKRLYQ 571 (573)
T ss_pred hcCEEEEEECCeeeecCCHHhhhcc-ccHHHHHhc
Confidence 9999999999999999999999996 788988865
No 39
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=1e-72 Score=694.54 Aligned_cols=564 Identities=27% Similarity=0.388 Sum_probs=463.7
Q ss_pred HHHHhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 46 FYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVT 125 (1178)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 125 (1178)
++++++|.++.++ .+++.+++.++..++....|++++.++|....... . . .....+++++++..+..++...
T Consensus 7 ~~~l~~~l~~~k~-~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~---~---~-~~~~~~~~~~~~~~~~~~~~~~ 78 (585)
T TIGR01192 7 YVRALSYLNVHKN-RVLLIVIANITLAAITIAEPILFGRIIDAISSKSD---V---L-PTLALWAGFGVFNTIAYVLVAR 78 (585)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---H---H-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455565554333 34455666666667777788899999987543211 0 1 1111112222333333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001041 126 CWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWL 205 (1178)
Q Consensus 126 ~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (1178)
.......+...++|.+++++++++|+++|++. ++|++++|+++|++.+...+...+...+..+..+++.+++++.++|.
T Consensus 79 ~~~~~~~~~~~~lr~~~~~~l~~l~~~~~~~~-~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 157 (585)
T TIGR01192 79 EADRLAHGRRATLLTEAFGRIISMPLSWHQQR-GTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWR 157 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555666677799999999999999974 89999999999999999888877777777777777777888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 206 LTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGL 285 (1178)
Q Consensus 206 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 285 (1178)
+++++++++|+++++..++.+..++..++..+..++..+.+.|.++|+++||+|+.|+.+.+++.+...+..+...+...
T Consensus 158 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (585)
T TIGR01192 158 LSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLD 237 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999989999888888888888888888888888999999999999999999999999999999888777666655555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 001041 286 AAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKP 365 (1178)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 365 (1178)
..++...+..++.....++.+++|.+++..+.++.|.+++++.+......++..+......+..+..+.+|+.+.++.++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~ 317 (585)
T TIGR01192 238 WWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVF 317 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 55554444444555555666778888888999999998887766666667777777888888889999999999887654
Q ss_pred CCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEE
Q 001041 366 EIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 445 (1178)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i 445 (1178)
+..... .....++..+.|+++||+|+|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 318 ~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~ 394 (585)
T TIGR01192 318 QREEPA-DAPELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILI 394 (585)
T ss_pred cccCCc-cCCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEE
Confidence 322111 111112234579999999999743 46899999999999999999999999999999999999999999999
Q ss_pred CCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCCh
Q 001041 446 DGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSG 525 (1178)
Q Consensus 446 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSg 525 (1178)
||.++.+++.+++|++++||||+|++|++|++|||.++.++.++++++.+++.+++++++.++|+|++|.+|++|.+|||
T Consensus 395 ~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSg 474 (585)
T TIGR01192 395 DGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSG 474 (585)
T ss_pred CCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCH
Confidence 99999999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChh
Q 001041 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHS 605 (1178)
Q Consensus 526 Gqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~ 605 (1178)
|||||++||||++++|+++|||||||+||+++++.+.+.+++..+++|+|+||||++.+..||+|++|++|++++.|+|+
T Consensus 475 Gq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~ 554 (585)
T TIGR01192 475 GERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQ 554 (585)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred HHhcCCCchHHHHHHHH
Q 001041 606 KLVEDPEGAYSQLIRLQ 622 (1178)
Q Consensus 606 ~l~~~~~~~~~~~~~~~ 622 (1178)
+++++ ++.|++++..+
T Consensus 555 ~l~~~-~~~y~~l~~~~ 570 (585)
T TIGR01192 555 ELIQK-DGRFYKLLRRS 570 (585)
T ss_pred HHHHC-CChHHHHHHhC
Confidence 99987 68899888754
No 40
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.2e-73 Score=759.82 Aligned_cols=500 Identities=19% Similarity=0.288 Sum_probs=407.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 114 IGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFL 193 (1178)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~ 193 (1178)
++..++.+++.+++.+.+.+++.++|.++++++++.|++||++ +++|+++||+++|++.+++.++..+..++..+..++
T Consensus 936 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~-~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i 1014 (1490)
T TIGR01271 936 DSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNT-MKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVL 1014 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566667777788889999999999999999999999997 599999999999999999999999999999988888
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHH
Q 001041 194 GGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFL 273 (1178)
Q Consensus 194 ~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~ 273 (1178)
+.++++++++|++++++++++.+++++..++.+..++..+......++..+++.|++.|+.+||+|++++.+.+++.+..
T Consensus 1015 ~~l~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~ 1094 (1490)
T TIGR01271 1015 GAIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKAL 1094 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHH
Confidence 88888888888765544444444444455555555556666677788899999999999999999999999999999887
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 274 VTAYKSGVQEGL---AAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAG 350 (1178)
Q Consensus 274 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ 350 (1178)
+...+....... +..........+..+ .++.++++.. ....+.+..++.+.+....++..+...+..+...
T Consensus 1095 ~~~~~~~~~~~~~~~wl~~~~~~i~~~~~~-~~~~l~~~~~-----~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~ 1168 (1490)
T TIGR01271 1095 NLHTANWFLYLSTLRWFQMRIDIIFVFFFI-AVTFIAIGTN-----QDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGL 1168 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHh-----cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 755443332222 222222221111111 1111222221 1233333333334444555666777778888899
Q ss_pred HHHHHHHHHHhccCCCCCcCCC----------------CCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCE
Q 001041 351 QAAAFKMFETINRKPEIDAYDT----------------KGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTT 414 (1178)
Q Consensus 351 ~~~~~r~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~ 414 (1178)
+.+.+|+.++++.++|...... ..++.|+..|.|+|+||+|+|+.. .+++|+|+||+|+|||+
T Consensus 1169 ~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~Gek 1247 (1490)
T TIGR01271 1169 MRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQR 1247 (1490)
T ss_pred HHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCCE
Confidence 9999999999876655321100 011124556889999999999753 46899999999999999
Q ss_pred EEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHH
Q 001041 415 AALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRV 494 (1178)
Q Consensus 415 ~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~ 494 (1178)
+||||+||||||||+++|+|+++ .+|+|.|||+|+++++++++|++|+||||+|.+|+||||+||+.. ..++++++++
T Consensus 1248 vaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~-~~~tdeei~~ 1325 (1490)
T TIGR01271 1248 VGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPY-EQWSDEEIWK 1325 (1490)
T ss_pred EEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcc-cCCCHHHHHH
Confidence 99999999999999999999997 789999999999999999999999999999999999999999864 4579999999
Q ss_pred HHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeE
Q 001041 495 ATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTT 574 (1178)
Q Consensus 495 ~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~ 574 (1178)
+++.+++++++..+|+|+||.+||+|.+||||||||+||||||+++|+|||||||||+||++|++.|++.|++.++++|+
T Consensus 1326 aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~Tv 1405 (1490)
T TIGR01271 1326 VAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTV 1405 (1490)
T ss_pred HHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCcchhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHHHhh
Q 001041 575 VIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEA 624 (1178)
Q Consensus 575 i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 624 (1178)
|+||||++++.+||+|+||++|+|+|.|+|++|+++ ++.|+++++....
T Consensus 1406 I~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~-~~~f~~l~~~~~~ 1454 (1490)
T TIGR01271 1406 ILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNE-TSLFKQAMSAADR 1454 (1490)
T ss_pred EEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcC-CcHHHHHHHHhCh
Confidence 999999999999999999999999999999999975 7899999875543
No 41
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=4.1e-72 Score=685.94 Aligned_cols=524 Identities=24% Similarity=0.341 Sum_probs=438.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 62 IIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGL 141 (1178)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~ 141 (1178)
++++++.++.+++.+..|++.++++|........ ......+...+++++++..++.+++.+...+.+.+...++|..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~ 82 (529)
T TIGR02857 6 ALLGLLGALGALLIIAQAWLLARVIDGLISAGEP---LAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRER 82 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666667777788888988876311111 1222333444555666677888888888889999999999999
Q ss_pred HHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 001041 142 YLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSG 221 (1178)
Q Consensus 142 ~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~ 221 (1178)
+++++++.|..+|++. ++|++++|+++|++.+++.+...+..++..+..+++.+++++.++|.+++++++.+|+..++.
T Consensus 83 l~~~l~~~~~~~~~~~-~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~ 161 (529)
T TIGR02857 83 LLAAVAALGPGWLQGR-PSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFM 161 (529)
T ss_pred HHHHHHhCCchhhccC-ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999874 999999999999999999988888888888888888888889999999998888888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 222 GVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCS 301 (1178)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (1178)
.++.+..++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+.............++....
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (529)
T TIGR02857 162 ILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLS 241 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778777777888888889999999999999999999999999999998887776666555554444333333333333
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCCCCcccCCCc
Q 001041 302 YALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIR 381 (1178)
Q Consensus 302 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (1178)
.++.+.+++..+..+.++.+.++.++.+......++..+...+..+..+..+.+|+.+.++.+++... . .....+..
T Consensus 242 ~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~-~--~~~~~~~~ 318 (529)
T TIGR02857 242 VALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG-K--APVTAAPA 318 (529)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC-C--cCCCCCCC
Confidence 33333344555567889999888776666666677777778888999999999999999875433211 1 11111123
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcc
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1178)
+.|+++||+|+||+. ++++|+|+||+|+|||+++||||||||||||+++|+|+++|++|+|.+||+|+++++.+++|++
T Consensus 319 ~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~ 397 (529)
T TIGR02857 319 PSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQ 397 (529)
T ss_pred CeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhh
Confidence 579999999999854 3579999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCC
Q 001041 462 IGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1178)
Q Consensus 462 i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~ 541 (1178)
++||||+|++|++||||||.++.++.++++++++++.++++++++++|+|+||.+||+|.+||||||||++||||++++|
T Consensus 398 i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~ 477 (529)
T TIGR02857 398 IAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDA 477 (529)
T ss_pred eEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999998888999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEE
Q 001041 542 RILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVI 593 (1178)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l 593 (1178)
+|+|||||||+||+++++.+.+.+++..+++|+|+||||+++++.||+|++|
T Consensus 478 ~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 478 PLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred CEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 9999999999999999999999999988899999999999999999999986
No 42
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=2.5e-70 Score=670.51 Aligned_cols=530 Identities=21% Similarity=0.288 Sum_probs=438.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 64 GSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYL 143 (1178)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~ 143 (1178)
.+++.++..++....|++++.++|......+. .....+.+.++++.++..++.+++.++....+.+...++|.+++
T Consensus 11 ~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~ 86 (544)
T TIGR01842 11 VGLFSFVINILMLAPPLYMLQVYDRVLTSGSV----PTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIF 86 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555666888888865432211 12222333344445556677788888888889999999999999
Q ss_pred HHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 001041 144 KTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGE-KVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGG 222 (1178)
Q Consensus 144 ~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~ 222 (1178)
+++++.|+. ..+...+++.+|++.+++.+.. .+..++..++.++ .++++++++|++++++++.+|+++++..
T Consensus 87 ~~ll~~~~~------~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~l~~~i~~ 159 (544)
T TIGR01842 87 AASFSATLR------RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHPWIGILALGGAVVLVGLAL 159 (544)
T ss_pred HHHhcCccc------CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 999999983 2356688899999999988766 4444555444444 3456788899998888887888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 223 VMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSY 302 (1178)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (1178)
+..+..++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+...+..+...+.....+....+..++.....
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (544)
T TIGR01842 160 LNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQ 239 (544)
T ss_pred HhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777888888999999999999999999999999999999998888777666665555555444444444455
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCCCCcccCCCcc
Q 001041 303 ALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRG 382 (1178)
Q Consensus 303 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (1178)
++.+++|..++..+.++.|.+++++.+......++..+......+..+..+.+|+.++++.+++.... ...+...+
T Consensus 240 ~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~----~~~~~~~~ 315 (544)
T TIGR01842 240 SLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA----MPLPEPEG 315 (544)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC----CCCCCCCC
Confidence 56677888888999999999988877777777788888888899999999999999999765542211 11122345
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.|+++|++|+|++. ++++|+|+||+++|||+++|+||||||||||+++|+|+++|++|+|.+||+++.+++.+.+|+++
T Consensus 316 ~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i 394 (544)
T TIGR01842 316 HLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHI 394 (544)
T ss_pred eEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhhe
Confidence 79999999999743 35799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCC
Q 001041 463 GLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1178)
Q Consensus 463 ~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~ 542 (1178)
+||||+|++|++|++|||.++.++.++++++++++.++++++++++|+|++|.+|++|.+||||||||++||||++++|+
T Consensus 395 ~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ 474 (544)
T TIGR01842 395 GYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPK 474 (544)
T ss_pred EEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998777789999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhc
Q 001041 543 ILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVE 609 (1178)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1178)
+||||||||+||+++++.+.+.++++. +++|+|+||||++.+..||+|++|++|++++.|+|+++++
T Consensus 475 ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 475 LVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred EEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 999999999999999999999998875 6799999999999999999999999999999999999865
No 43
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-70 Score=589.09 Aligned_cols=489 Identities=31% Similarity=0.440 Sum_probs=414.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHH
Q 001041 127 WMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATF-LGGFLIAFIKGWL 205 (1178)
Q Consensus 127 ~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 205 (1178)
+...+..+...+--..|.|+.++++.|+-++ .+|.+...+..-...|+..+...+...+-.++-+ +..++....++|+
T Consensus 6 fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r-~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~ 84 (497)
T COG5265 6 FSPVGQIAVRVLAYVTFFHLHSLSLRFHLER-RTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGWW 84 (497)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcchhhhhhc-ccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccH
Confidence 3344555556666678899999999998765 7887777776666666666665555555554443 3445566678899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 206 LTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGL 285 (1178)
Q Consensus 206 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 285 (1178)
.+++.++.+.++.++............+...++.++......++|-+..++|.||.|+.+..+|...++.+.+...+...
T Consensus 85 f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~ 164 (497)
T COG5265 85 FALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHV 164 (497)
T ss_pred HHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHH
Confidence 99888888888777766666666666677777888899999999999999999999999999999999988888777655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 001041 286 AAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKP 365 (1178)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 365 (1178)
..++....-..+...........+...+..+.+|.|.++..-.+.++.+.++..+......+.++..-.+++++.+..+.
T Consensus 165 Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~ 244 (497)
T COG5265 165 SLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEA 244 (497)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccch
Confidence 44433222223333333344455566677889999998877777778788888777788899999999999999988776
Q ss_pred CCCcCCCCCcccC-CCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEE
Q 001041 366 EIDAYDTKGKILD-DIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 444 (1178)
Q Consensus 366 ~~~~~~~~~~~~~-~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~ 444 (1178)
+..+.. +.++.+ ...|.+.|+||+|.|.. .+++|+++||++++|++++|||++|+||||++++|.|+|++++|.|.
T Consensus 245 ~v~d~p-da~~L~~~~~g~v~F~~V~F~y~~--~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~ 321 (497)
T COG5265 245 EVSDAP-DAPPLWPVRLGAVAFINVSFAYDP--RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSIT 321 (497)
T ss_pred hhccCC-CCccccccccceEEEEEEEeeccc--cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEE
Confidence 654332 223333 34678999999999964 56899999999999999999999999999999999999999999999
Q ss_pred ECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCC
Q 001041 445 IDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLS 524 (1178)
Q Consensus 445 i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lS 524 (1178)
+||.|+++...+.+|+.||.||||..||++|+..||.+|.|..++++++.+++.++++++++.+|+|++|.|||+|-.||
T Consensus 322 id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklS 401 (497)
T COG5265 322 IDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLS 401 (497)
T ss_pred EcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecCh
Q 001041 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTH 604 (1178)
Q Consensus 525 gGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 604 (1178)
||||||+|+||+++++|+||+|||+|||||.+||+.||..+++..+++|.++|+||++++.+||.|+||++|+|+|.|+|
T Consensus 402 ggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h 481 (497)
T COG5265 402 GGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTH 481 (497)
T ss_pred CchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhcCCCchHHHHHH
Q 001041 605 SKLVEDPEGAYSQLIR 620 (1178)
Q Consensus 605 ~~l~~~~~~~~~~~~~ 620 (1178)
++|++. +|.|++|+.
T Consensus 482 ~~ll~~-~g~ya~mw~ 496 (497)
T COG5265 482 EELLAA-GGLYAEMWR 496 (497)
T ss_pred HHHHHc-CChHHHHhc
Confidence 999998 899999874
No 44
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=3e-66 Score=633.98 Aligned_cols=535 Identities=17% Similarity=0.138 Sum_probs=418.9
Q ss_pred hHHHHhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 45 PFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQV 124 (1178)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 124 (1178)
..++++++++...+..+++++++.++.+++....+++++.+++.... .. . .. .+.++++.++..++.++..
T Consensus 4 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~--~~-~--~~----~~~~~~~~~~~~~~~~~~~ 74 (555)
T TIGR01194 4 AIGEILALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENF--LG-Q--GS----LFSFGGLCLLALLFRIGAD 74 (555)
T ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--cc-c--hH----HHHHHHHHHHHHHHHHHHH
Confidence 35666676661233444455555555555556666666666553110 00 0 01 1113334445567778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001041 125 TCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGW 204 (1178)
Q Consensus 125 ~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (1178)
++....+.+...++|..+++++++.|+.+|++. ++|++++|+++|++.+++.+.. +..++..+..+++.++++++++|
T Consensus 75 ~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~-~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~ 152 (555)
T TIGR01194 75 IFPAYAGMHIIANLRIALCEKILGAPIEEIDRR-GAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSV 152 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhc-CcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhH
Confidence 888889999999999999999999999999974 9999999999999999998864 66677777777888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHH--HHHHHHHHHHHHHHHHHHH
Q 001041 205 LLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEK--QAMSNYKKFLVTAYKSGVQ 282 (1178)
Q Consensus 205 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~--~~~~~~~~~~~~~~~~~~~ 282 (1178)
.+++++++.+|+.+++..+..++.++...+.++..++..+.+.|.+.|++++|+|+.++ ...+++.+...+..+...+
T Consensus 153 ~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (555)
T TIGR01194 153 PMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHII 232 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999888888877777777677777777777888899999999999999999999954 4566677766666555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001041 283 EGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETIN 362 (1178)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 362 (1178)
..........+..++..+...++++++... +.++.|.+++++.+......++..+...+..+..+..+.+|+.+.++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~ 309 (555)
T TIGR01194 233 EILIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGE 309 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 443333322222233333333334444332 57888888888777777778888888999999999999999999875
Q ss_pred cCCC--CCcC-CC-CCc---ccCCCcccEEEEeEEEECCCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHh
Q 001041 363 RKPE--IDAY-DT-KGK---ILDDIRGDIELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIE 433 (1178)
Q Consensus 363 ~~~~--~~~~-~~-~~~---~~~~~~~~i~~~~~~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~ 433 (1178)
.+++ .... .. ... +.....+.|+++||+|+|++++ .+++|+|+||++++||+++||||||||||||+++|+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~ 389 (555)
T TIGR01194 310 RFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFC 389 (555)
T ss_pred hhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 3211 1100 00 000 1112246799999999997532 236999999999999999999999999999999999
Q ss_pred ccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCcc
Q 001041 434 RFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGID 513 (1178)
Q Consensus 434 g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~ 513 (1178)
|+++|++|+|.+||+|+++++.+++|++++||+|+|++|++|+++|+ .++.++++++++++.+++++++..+|+|++
T Consensus 390 g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~ 466 (555)
T TIGR01194 390 GLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---GEHASLDNAQQYLQRLEIADKVKIEDGGFS 466 (555)
T ss_pred CCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---ccchhHHHHHHHHHHcCCchhhcccccccC
Confidence 99999999999999999999999999999999999999999999995 356788999999999999999999999999
Q ss_pred chhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHH-HH-hcCCeEEEEecCcchhhccCEEE
Q 001041 514 TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALD-RI-MVNRTTVIVAHRLSTVRNADMIA 591 (1178)
Q Consensus 514 t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~-~~-~~~~t~i~itH~~~~~~~~d~i~ 591 (1178)
|. .+||||||||++||||++++|+|+|||||||+||+++++.+.+.+. .. .+++|+|+||||++++..||+|+
T Consensus 467 t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~ 541 (555)
T TIGR01194 467 TT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQII 541 (555)
T ss_pred Cc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEE
Confidence 94 7899999999999999999999999999999999999999988764 33 36899999999999999999999
Q ss_pred EEeCCEEEEe
Q 001041 592 VIHRGKIVEK 601 (1178)
Q Consensus 592 ~l~~G~i~~~ 601 (1178)
+|++|+++|.
T Consensus 542 ~l~~G~i~~~ 551 (555)
T TIGR01194 542 KLAAGCIVKD 551 (555)
T ss_pred EEECCEEEEe
Confidence 9999999874
No 45
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=6e-66 Score=626.30 Aligned_cols=464 Identities=25% Similarity=0.360 Sum_probs=422.8
Q ss_pred hhHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 706 PTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFF 785 (1178)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1178)
...+++....+++..++-.++.+++..++..+.|++...++|.+..... ........+.++++++...++.+++.+++
T Consensus 141 ~~~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~--~~tL~vl~ig~~~~~l~~~~l~~lr~~~~ 218 (709)
T COG2274 141 GLSWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDAS--RSTLTVLAIGLLLAALFEALLRLLRTYLI 218 (709)
T ss_pred chHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556667777777777777777777788888888888764322 22233445556667788889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001041 786 AVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQL 865 (1178)
Q Consensus 786 ~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l 865 (1178)
...+.++..++-.++|+|++++|++||+ ++++|++++|+. |++.|+++++..+...+.++.++++.+++|++++|+|
T Consensus 219 ~~~~~rld~~l~~~~~~hll~Lpl~~f~--~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L 295 (709)
T COG2274 219 AHLGKRLDLELSGRFFRHLLRLPLSYFE--KRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKL 295 (709)
T ss_pred HHHHHHHhHHHHHHHHHHHHcCcHHHcc--CCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 589999999998 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHH
Q 001041 866 ALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMV 945 (1178)
Q Consensus 866 ~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 945 (1178)
++++++.+|++++...+..+++++..++.-...++.++.+.|++.|++|||+.+.|.++..+|++...++.+...+....
T Consensus 296 ~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~ 375 (709)
T COG2274 296 TLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKL 375 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCC
Q 001041 946 SGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESK 1025 (1178)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~ 1025 (1178)
......+..++..+..++++|+|++++.+|.+|+|.+++|.++...+..|+.++.+++.++++...+.+|+.++++.|+|
T Consensus 376 ~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E 455 (709)
T COG2274 376 ALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPE 455 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCCCCCCcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEEC
Q 001041 1026 IDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLD 1105 (1178)
Q Consensus 1026 ~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~ID 1105 (1178)
.+.+.. ....+...|+|+|+||+|+|+.+ ++++|+|+||+|+|||+|||||+||||||||+++|.|+|+|++|+|++|
T Consensus 456 ~~~~~~-~~~~~~~~g~I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~d 533 (709)
T COG2274 456 QEGDKT-LIHLPKLQGEIEFENVSFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLD 533 (709)
T ss_pred cccccc-cccccccCceEEEEEEEEEeCCC-CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 543321 22345578999999999999865 3479999999999999999999999999999999999999999999999
Q ss_pred CcccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1106 GVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1106 G~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
|+|+.++++++||++|++||||++||+|||||||++++ +++++||+++||+.|++||||++||+||||+|+
T Consensus 534 g~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~-p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~ 604 (709)
T COG2274 534 GVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGN-PEATDEEIIEAAQLAGAHEFIENLPMGYDTPVG 604 (709)
T ss_pred CEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCC-CCCCHHHHHHHHHHhCcHHHHHhcccccccccc
Confidence 99999999999999999999999999999999999996 589999999999999999999999999999985
No 46
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=1e-64 Score=559.81 Aligned_cols=519 Identities=22% Similarity=0.307 Sum_probs=426.1
Q ss_pred HHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhc
Q 001041 77 LMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDN 156 (1178)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~ 156 (1178)
..+.++-++-|....+.+. ..+....+..+++-++.+++-+++.....+.+.++-.++...++.+.++.+...-
T Consensus 41 ~~~lyMLQVyDRVL~S~s~----~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~~-- 114 (580)
T COG4618 41 TGPLYMLQVYDRVLPSRSV----PTLVMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLRR-- 114 (580)
T ss_pred hhhHHHHHHHhhhccCCCc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhhc--
Confidence 3344555666766654332 1222222233334445667788888888888999999999999998887776532
Q ss_pred cCCccHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 157 ETNTGEVVGRMSGDTVLIQDAMGE-KVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRG 235 (1178)
Q Consensus 157 ~~~~G~i~~r~s~D~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (1178)
..|+=..-+ +|.+.++.+++. ....++...|+.+ .+.++|.+++++.++.++...+++.+..+-....++-.++.
T Consensus 115 --~~g~~~Q~L-rDL~qvR~Fltg~g~~A~fDaPW~P~-yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA 190 (580)
T COG4618 115 --GSGDGLQPL-RDLDQVRQFLTGTGLTAFFDAPWMPL-YLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEA 190 (580)
T ss_pred --CCCccccch-hhHHHHHHHHcCCCcchhcCCchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHH
Confidence 334333333 599999999885 5566666666544 45677888888888887777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001041 236 QGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILE 315 (1178)
Q Consensus 236 ~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 315 (1178)
.+...+++.+...+..|..+|++.|+.....++|.+.............-..+......-.+-.+.....+..|++++..
T Consensus 191 ~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ 270 (580)
T COG4618 191 SEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVIK 270 (580)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeEEc
Confidence 88888899999999999999999999999999999888777666555554444444455555556666777789999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCCCCcccCCCcccEEEEeEEEECCC
Q 001041 316 EGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPA 395 (1178)
Q Consensus 316 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~ 395 (1178)
+.+|+|.+++.....-....++......+.++..++.+..|+.+.+.+.|+..+ ..+.+..+|.+.++++++.-|+
T Consensus 271 ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~----~m~LP~P~g~L~Ve~l~~~PPg 346 (580)
T COG4618 271 GEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAE----RMPLPAPQGALSVERLTAAPPG 346 (580)
T ss_pred CcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC----CCCCCCCCceeeEeeeeecCCC
Confidence 999999887654444344457777788888999999999999999987665321 2344455789999999998765
Q ss_pred CCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCccc
Q 001041 396 RPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGS 475 (1178)
Q Consensus 396 ~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~t 475 (1178)
. ++|+|+++||++++||-++||||||||||||.++|.|..+|.+|.|++||.|++..+.+.+-++|||.||+-.||+||
T Consensus 347 ~-~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GT 425 (580)
T COG4618 347 Q-KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGT 425 (580)
T ss_pred C-CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCc
Confidence 4 578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 001041 476 IKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555 (1178)
Q Consensus 476 i~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~ 555 (1178)
|+|||+-..++.+++.+.++.+.++.||.|.++|+||||.||+.|.+|||||||||+||||+|.+|.+++||||-|+||.
T Consensus 426 IaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~ 505 (580)
T COG4618 426 IAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDS 505 (580)
T ss_pred HHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcch
Confidence 99999976678899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHh-cCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcC
Q 001041 556 ESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 556 ~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
+.|..+.++|.... +++|+|+||||++.+..+|+|++|++|++..+|+-+|.+++
T Consensus 506 ~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 506 EGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 99999999997765 68999999999999999999999999999999999998764
No 47
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=8.5e-62 Score=595.00 Aligned_cols=464 Identities=19% Similarity=0.200 Sum_probs=358.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 117 GIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGF 196 (1178)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~ 196 (1178)
.++.++..++..+.+.+...++|.++++++++.|+++|++. ++|++++|+++|++.+...+. .+..++..++.+++.+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~-~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~ 139 (547)
T PRK10522 62 MAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQL-GSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSA 139 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhcc-CccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 44566777778888899999999999999999999999974 999999999999999998665 4666777777888888
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcH---HHHHHHHHHHH
Q 001041 197 LIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGE---KQAMSNYKKFL 273 (1178)
Q Consensus 197 ~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e---~~~~~~~~~~~ 273 (1178)
+++++++|.+++++++.+|+.+++..++.+..++..++.++..++..+.+.|.++|+++++ ++.+ +.+.+++.+..
T Consensus 140 ~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~ 218 (547)
T PRK10522 140 AYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDA 218 (547)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHH
Confidence 8899999999999998899888888888888888888888889999999999999999996 4433 35566777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 274 VTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAA 353 (1178)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~ 353 (1178)
++..+...+.............++..+...++++.+.... ..+.+.+..+..+.+....++..+...+..+..+..+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a 295 (547)
T PRK10522 219 QEYRHHIIRADTFHLSAVNWSNIMMLGAIGLVFYMANSLG---WADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVA 295 (547)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6555444433333222222211222222222333333211 1122222222222233345777778888889999999
Q ss_pred HHHHHHHhccCCCCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHh
Q 001041 354 AFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIE 433 (1178)
Q Consensus 354 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~ 433 (1178)
.+|+.++.+.+++.+..+ ..+. +..+.|+++|++|+|++ ++++|+|+||+++|||+++|+||||||||||+++|+
T Consensus 296 ~~ri~~l~~~~~~~~~~~--~~~~-~~~~~i~~~~v~f~y~~--~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~ 370 (547)
T PRK10522 296 FNKLNKLALAPYKAEFPR--PQAF-PDWQTLELRNVTFAYQD--NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLT 370 (547)
T ss_pred HHHHHHHhcccccccccc--cccc-CcCceEEEEEEEEEeCC--CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 999999875433211111 1111 11357999999999974 246999999999999999999999999999999999
Q ss_pred ccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCcc
Q 001041 434 RFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGID 513 (1178)
Q Consensus 434 g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~ 513 (1178)
|+++|++|+|.+||+|+++++.+++|++++||||+|++|++|+++| + +..++++++++++.+++.+++. .|+|.
T Consensus 371 g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~~~~~~~~~~~~~~~~l~~~~~-~~~~~- 444 (547)
T PRK10522 371 GLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G-KPANPALVEKWLERLKMAHKLE-LEDGR- 444 (547)
T ss_pred CCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---c-CchHHHHHHHHHHHcCCchhhh-ccccC-
Confidence 9999999999999999999999999999999999999999999999 2 3456666666666655544432 12221
Q ss_pred chhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhhccCEEE
Q 001041 514 TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRNADMIA 591 (1178)
Q Consensus 514 t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~~d~i~ 591 (1178)
.+|.+||||||||++||||++++|++||||||||+||+++++.+.+.+.+.. +++|+|+||||++.+..||+|+
T Consensus 445 ----~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~ 520 (547)
T PRK10522 445 ----ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLL 520 (547)
T ss_pred ----CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEE
Confidence 1378999999999999999999999999999999999999999999987654 4799999999999999999999
Q ss_pred EEeCCEEEEe
Q 001041 592 VIHRGKIVEK 601 (1178)
Q Consensus 592 ~l~~G~i~~~ 601 (1178)
+|++|+++|.
T Consensus 521 ~l~~G~i~e~ 530 (547)
T PRK10522 521 EMRNGQLSEL 530 (547)
T ss_pred EEECCEEEEe
Confidence 9999999976
No 48
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=1.4e-62 Score=601.84 Aligned_cols=458 Identities=20% Similarity=0.234 Sum_probs=394.1
Q ss_pred hhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 710 LAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFW--ALIYLALGAGSFLLSPAQSYFFAV 787 (1178)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1178)
++.+.+++++.++.++++.++..++....+++++.++|....... ....+ ...++++.++..++.++..++.+.
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (529)
T TIGR02868 4 ILPLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP----VLYLSVAAVAVRAFGIGRAVFRYLERLVGHD 79 (529)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777777777777777778888888888886543211 11111 111223455667788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001041 788 AGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLAL 867 (1178)
Q Consensus 788 ~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l~l 867 (1178)
.+.++..++|.++|+|++++|.+||+ ++++|++++|+++|++.+++.+...+..++..++.+++.++++++++|.+++
T Consensus 80 ~~~~~~~~lr~~~~~~ll~~~~~~~~--~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 157 (529)
T TIGR02868 80 AALRSLGRLRVRVYDRLARLALAGRR--RFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAAL 157 (529)
T ss_pred HHHHHHHHHHHHHHHHhhccCccccc--cCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999999999 5899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHHH
Q 001041 868 IILVMLPLIGVSGYTQM-KFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVS 946 (1178)
Q Consensus 868 ~~l~~~pl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1178)
++++.+|++.++...+. +..++..++.++..++..+.+.|.++|+++||+|++|+.+.++|++..++..+...+.....
T Consensus 158 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (529)
T TIGR02868 158 VLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARAT 237 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888766654444 44456667777888999999999999999999999999999999999999999999988888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCC
Q 001041 947 GGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKI 1026 (1178)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~ 1026 (1178)
+...++..++..+..++++++|++++.+|.+++|.++++..+...+..|+..+......++++..+.+|+.++++.+++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~ 317 (529)
T TIGR02868 238 GLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPR 317 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 88888888888888888899999999999999999999999999999999999999999999999999999999876543
Q ss_pred CCCCCC-CCcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEEC
Q 001041 1027 DPSDES-GTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLD 1105 (1178)
Q Consensus 1027 ~~~~~~-~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~ID 1105 (1178)
+..... .....+..++|+|+||+|+|+++ +++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|+||
T Consensus 318 ~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~ 395 (529)
T TIGR02868 318 PEGVVPAAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLD 395 (529)
T ss_pred CCCCCCCCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 221111 11112234679999999999743 369999999999999999999999999999999999999999999999
Q ss_pred CcccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1106 GVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1106 G~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
|+|++++ .+++|++|++|||||+||+|||||||+||+ ++++|||+++|++.|+++|||.+||+||||+|+
T Consensus 396 g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~-~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ig 465 (529)
T TIGR02868 396 GVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGR-PDATDEELWAALERVGLADWLRSLPDGLDTVLG 465 (529)
T ss_pred CEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccC-CCCCHHHHHHHHHHcCCHHHHHhCcccccchhc
Confidence 9999999 999999999999999999999999999995 479999999999999999999999999999985
No 49
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=2.3e-61 Score=606.25 Aligned_cols=465 Identities=28% Similarity=0.388 Sum_probs=412.1
Q ss_pred hhHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 706 PTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFF 785 (1178)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1178)
..++++.+.++.++.+..++++.++..++....+++++.++|....... .......+++++++.++..++.+++.+++
T Consensus 148 ~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 225 (711)
T TIGR00958 148 LLFRLLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKG--PPALASAIFFMCLLSIASSVSAGLRGGSF 225 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777888888888888888888888889999999987753221 11122233344455566777888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001041 786 AVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQL 865 (1178)
Q Consensus 786 ~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l 865 (1178)
...+.++..++|.++|++++++|++||+ ++++|++++|+++|++.+++.+...+..++.+++.+++.+++++.++|++
T Consensus 226 ~~~~~~~~~~lr~~l~~~ll~~~~~~f~--~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l 303 (711)
T TIGR00958 226 NYTMARINLRIREDLFRSLLRQDLGFFD--ENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRL 303 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHc--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999999999 58999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHH
Q 001041 866 ALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMV 945 (1178)
Q Consensus 866 ~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 945 (1178)
++++++.+|+.+++..++.++.++..++.++..++.++.+.|+++|+++||+|+.|+++.++|.+..++..+...+....
T Consensus 304 ~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 383 (711)
T TIGR00958 304 TMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALA 383 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988887777
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCC
Q 001041 946 SGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESK 1025 (1178)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~ 1025 (1178)
.+........+..+..++++++|++++.+|.+|+|+++++..+...+..|+..+......++++..+.+|++++++.+++
T Consensus 384 ~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~ 463 (711)
T TIGR00958 384 YAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPN 463 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 76666666666677777888999999999999999999999999999999999999999999999999999999987765
Q ss_pred CCCCCCCCCcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEEC
Q 001041 1026 IDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLD 1105 (1178)
Q Consensus 1026 ~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~ID 1105 (1178)
.++.. ...+.+..|.|+|+||+|+||+++++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++|
T Consensus 464 ~~~~~--~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~id 541 (711)
T TIGR00958 464 IPLTG--TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLD 541 (711)
T ss_pred CCCCC--CCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEEC
Confidence 43211 1112234678999999999986555689999999999999999999999999999999999999999999999
Q ss_pred CcccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1106 GVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1106 G~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
|+|+++++.+++|++|++|||||+||+|||||||+||. ++++|||+++|++.|++++||++||+||||.++
T Consensus 542 g~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~-~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ig 612 (711)
T TIGR00958 542 GVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGL-TDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVG 612 (711)
T ss_pred CEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCC-CCCCHHHHHHHHHHcCCHHHHHhCCCccCCccc
Confidence 99999999999999999999999999999999999995 478999999999999999999999999999875
No 50
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=7.1e-61 Score=590.56 Aligned_cols=448 Identities=30% Similarity=0.473 Sum_probs=400.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 717 EIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRI 796 (1178)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 796 (1178)
++ .+..+.++.++...+....++++..+++..... ......+...++++.++..++.++..++..+.+.+...++
T Consensus 13 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l 87 (567)
T COG1132 13 YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLAD----LGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADL 87 (567)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55 666777777777777788888888888876511 1122233444555555677788888888888889999999
Q ss_pred HHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 001041 797 RSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLI 876 (1178)
Q Consensus 797 r~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l~l~~l~~~pl~ 876 (1178)
|.+++++++++|++||+ ++++|++++|+++|++.++..+.+....+...++.+++.+++++..+|++++++++.+|++
T Consensus 88 r~~~~~~l~~~~~~~~~--~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ 165 (567)
T COG1132 88 RRDLFEKLLRLPLSFFD--KAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLL 165 (567)
T ss_pred HHHHHHHHHhCCHHHhC--cCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999999999 5889999999999999999999999766776888999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHHHhhHHHHHHHH
Q 001041 877 GVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFL 956 (1178)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 956 (1178)
.+...+..++.++..+..++..++.++.+.|+++|+++||+|+.++.+.++|.+..+...+...+.....+...++...+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (567)
T COG1132 166 ALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLL 245 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888899999999999999999999999999999999999999999999999999888888888888889999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcc
Q 001041 957 LFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTIL 1036 (1178)
Q Consensus 957 ~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~ 1036 (1178)
..+...+++++|.+++..+.+++|.+++++.+...+..|+..+......++.+..+.+|++++++.+++..+.+.. .
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~---~ 322 (567)
T COG1132 246 SSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP---L 322 (567)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC---C
Confidence 9999999999999999999999999999999999999999999999999999999999999999987654332211 2
Q ss_pred cCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHH
Q 001041 1037 EDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW 1116 (1178)
Q Consensus 1037 ~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~ 1116 (1178)
....|+|+|+||+|+|++ ++++|+|+||+|+|||++|||||||||||||+++|+|||||++|+|+|||+||+++++++
T Consensus 323 ~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~ 400 (567)
T COG1132 323 KDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDS 400 (567)
T ss_pred CCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHH
Confidence 334678999999999973 457999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1117 LRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1117 LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
||++|++|||||+||+|||+|||+||++ ++|||||++|||.|++||||++||+||||.|+
T Consensus 401 lr~~I~~V~Qd~~LF~~TI~~NI~~g~~-~at~eei~~a~k~a~~~d~I~~lp~g~dt~vg 460 (567)
T COG1132 401 LRKRIGIVSQDPLLFSGTIRENIALGRP-DATDEEIEEALKLANAHEFIANLPDGYDTIVG 460 (567)
T ss_pred HHHhccEEcccceeecccHHHHHhcCCC-CCCHHHHHHHHHHhChHHHHHhCcccccceec
Confidence 9999999999999999999999999964 79999999999999999999999999999986
No 51
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.2e-60 Score=592.11 Aligned_cols=462 Identities=19% Similarity=0.215 Sum_probs=392.1
Q ss_pred hHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 707 TRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFA 786 (1178)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1178)
+++++.+.+++++.+++++++.++..++....++++..++|....+... ......+..+++++.++..++.+++.++.+
T Consensus 10 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (588)
T PRK11174 10 TRWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIP-REALLPPFILLILLFVLRALLAWLRERVGF 88 (588)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667778888899999999988888888888999999999876421111 111223344455566677888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001041 787 VAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLA 866 (1178)
Q Consensus 787 ~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l~ 866 (1178)
..+.++..++|.++|+|++++|++||+ ++++|++++|+++|++.+++++.+.+..++..++.+++.++++++++|+++
T Consensus 89 ~~~~~~~~~lr~~~~~~ll~~~~~~~~--~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 166 (588)
T PRK11174 89 KAGQHIRQQIRQQVLDKLQQLGPAWIQ--GKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAG 166 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhhc--cCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 589999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHHH
Q 001041 867 LIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVS 946 (1178)
Q Consensus 867 l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1178)
+++++++|+.+++...+.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|++..++..+...+..+..
T Consensus 167 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (588)
T PRK11174 167 LILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMA 246 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888888888888888999999999999999999999999999999999999999998888877776
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHH---------HHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Q 001041 947 GGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDV---------FKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIF 1017 (1178)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l---------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~ 1017 (1178)
....++...+..+..+++++++++.+. |.+|+|.+ +.++.+...+..|+..+......++++..+.+|+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~ 325 (588)
T PRK11174 247 FLSSAVLEFFASISIALVAVYFGFSYL-GELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLV 325 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666665555555455455554443 77776654 23335556678899999999999999999999999
Q ss_pred HHhcCCCCCCCCCCCCCcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCC
Q 001041 1018 AIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP 1097 (1178)
Q Consensus 1018 ~~l~~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p 1097 (1178)
++++.+++.+... ....+.+..++|+|+||+|.|++ +++||+|+||+|+|||++||||+||||||||+++|+|+| |
T Consensus 326 ~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p 401 (588)
T PRK11174 326 TFLETPLAHPQQG-EKELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P 401 (588)
T ss_pred HHHcCCCcccCCC-ccccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C
Confidence 9998765322111 11111123457999999998863 346999999999999999999999999999999999999 9
Q ss_pred CCCeEEECCcccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1098 DAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1098 ~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
++|+|++||+|+++++.+++|++|++|||||+||+|||||||+||+ +++||||+++||+.|++||||++||+||||.|+
T Consensus 402 ~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~-~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vg 480 (588)
T PRK11174 402 YQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGN-PDASDEQLQQALENAWVSEFLPLLPQGLDTPIG 480 (588)
T ss_pred CCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCC-CCCCHHHHHHHHHHhCHHHHHHhcccccccccc
Confidence 9999999999999999999999999999999999999999999995 479999999999999999999999999999985
No 52
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=5e-60 Score=597.47 Aligned_cols=463 Identities=19% Similarity=0.265 Sum_probs=406.5
Q ss_pred hHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 707 TRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFA 786 (1178)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1178)
+++++.+.+++++.+...++++++..++....++++..++|....... ......+.++++++.++..++.+++.++..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (708)
T TIGR01193 144 LLKFIPLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKM--MGTLGIISIGLIIAYIIQQILSYIQIFLLN 221 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666677777777777777777778888899999987754321 112222333444555667788899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001041 787 VAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLA 866 (1178)
Q Consensus 787 ~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l~ 866 (1178)
..+.++..++|.++|+|++++|++||+ ++++|++++|++ |.+.+.+++...+..++..++.+++.++++++++|+++
T Consensus 222 ~~~~~~~~~l~~~~~~~ll~l~~~~f~--~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 298 (708)
T TIGR01193 222 VLGQRLSIDIILSYIKHLFELPMSFFS--TRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLF 298 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhC--CCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999999999999999 589999999998 99999999998888888888888888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHHH
Q 001041 867 LIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVS 946 (1178)
Q Consensus 867 l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1178)
+++++.+|+++++.+++.++.++..++.++..++.++.+.|+++|+++||+||.|+.+.++|.+..++..+...+.....
T Consensus 299 li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (708)
T TIGR01193 299 LLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKAD 378 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888888877
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCC
Q 001041 947 GGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKI 1026 (1178)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~ 1026 (1178)
.....+..++..+..++++++|++++.+|.+|+|+++++..+...+..|+..+......++.+..+.+|+.++++.+++.
T Consensus 379 ~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~ 458 (708)
T TIGR01193 379 QGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEF 458 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 77777777777777888999999999999999999999999999999999999999999999999999999999877654
Q ss_pred CCCCCCCCcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECC
Q 001041 1027 DPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG 1106 (1178)
Q Consensus 1027 ~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG 1106 (1178)
+.... ....++..|+|+|+||+|+|++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|+|||
T Consensus 459 ~~~~~-~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg 535 (708)
T TIGR01193 459 INKKK-RTELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNG 535 (708)
T ss_pred ccccc-ccCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECC
Confidence 32211 0112334678999999999973 34799999999999999999999999999999999999999999999999
Q ss_pred cccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1107 VEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1107 ~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
+|+++++.+++|++|++|||||+||+|||||||++|..++++|||+++|++.|+++|||++||+||||.|+
T Consensus 536 ~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~ 606 (708)
T TIGR01193 536 FSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELS 606 (708)
T ss_pred EEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEec
Confidence 99999999999999999999999999999999999843479999999999999999999999999999885
No 53
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=1.9e-59 Score=590.15 Aligned_cols=453 Identities=20% Similarity=0.211 Sum_probs=402.5
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 714 NKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLI 793 (1178)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (1178)
.++.++.+...++++++..++....++++..++|....... ......+++.++++.++..++.+++.++....+.++.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (686)
T TIGR03797 131 LRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDAD--RSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMD 208 (686)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777778888888888887753211 1122333444555666778889999999999999999
Q ss_pred HHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 001041 794 QRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVML 873 (1178)
Q Consensus 794 ~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l~l~~l~~~ 873 (1178)
.++|.++|+|++++|++||+ ++++|++++|++ |++.+++++...+...+...+.+++.++++++++|++++++++++
T Consensus 209 ~~l~~~~~~~ll~~~~~~~~--~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~ 285 (686)
T TIGR03797 209 ASLQAAVWDRLLRLPVSFFR--QYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALA 285 (686)
T ss_pred HHHHHHHHHHHHcCCHHHHC--CCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 589999999998 899999999998888888888888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHHHhhHHHHH
Q 001041 874 PLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGAS 953 (1178)
Q Consensus 874 pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 953 (1178)
|+.+++.++..++.++..++.++..++.++.+.|+++|+++||+|+.|+++.++|.+..++..+...+..........+.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (686)
T TIGR03797 286 LVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFN 365 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999989999999988999999999999999999999999999999999999999999999999999888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 001041 954 FFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESG 1033 (1178)
Q Consensus 954 ~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~ 1033 (1178)
.++..+..++++++|++++.+|.+|+|+++++..+...+..|+..+.+....++.+..+.+|+.++++.+++.+...
T Consensus 366 ~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~--- 442 (686)
T TIGR03797 366 AVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAK--- 442 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCc---
Confidence 88888888899999999999999999999999999999999999999999999999999999999998765532211
Q ss_pred CcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC
Q 001041 1034 TILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ 1113 (1178)
Q Consensus 1034 ~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~ 1113 (1178)
..+.+..|.|+|+||+|+|+++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|+|||+|+++++
T Consensus 443 ~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~ 521 (686)
T TIGR03797 443 TDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLD 521 (686)
T ss_pred CCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCC
Confidence 1122345789999999999743 357999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1114 LKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1114 l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
.+++|++|++|||||+||+|||||||++|+ + ++|||+++|++.|+++|+|++||+||||.++
T Consensus 522 ~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~-~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ig 583 (686)
T TIGR03797 522 VQAVRRQLGVVLQNGRLMSGSIFENIAGGA-P-LTLDEAWEAARMAGLAEDIRAMPMGMHTVIS 583 (686)
T ss_pred HHHHHhccEEEccCCccCcccHHHHHhcCC-C-CCHHHHHHHHHHcCcHHHHHhcccccccccc
Confidence 999999999999999999999999999995 3 8999999999999999999999999999875
No 54
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=3.5e-59 Score=573.88 Aligned_cols=461 Identities=18% Similarity=0.174 Sum_probs=394.3
Q ss_pred hhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCch--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 709 RLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHE--LKKDSRFWALIYLALGAGSFLLSPAQSYFFA 786 (1178)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1178)
+++++.+++++.+++++++.++..++....+++++++++........ .......+...+++++++..++.++..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (574)
T PRK11160 6 PFLKLYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSH 85 (574)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677778788888888888888788888888888865321110 0001111222344456677888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001041 787 VAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLA 866 (1178)
Q Consensus 787 ~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l~ 866 (1178)
..+.++..++|.++|+|++++|++||+ ++++|++++|+++|++.++.++.+.+..++..++.+++.++++++++|+++
T Consensus 86 ~~~~~~~~~lR~~l~~~l~~~~~~~~~--~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 163 (574)
T PRK11160 86 DATFRVLTHLRVFTFSKLLPLSPAGLA--RYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLA 163 (574)
T ss_pred HHHHHHHHHHHHHHHHHhhccChHhhc--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 589999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHH
Q 001041 867 LIILVMLPLIGV-SGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMV 945 (1178)
Q Consensus 867 l~~l~~~pl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 945 (1178)
+++++++|++++ ..+++.++.++..++.++..++.++.+.|.++|+++||+|+.|+++.++|++..+++.+...+..+.
T Consensus 164 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 243 (574)
T PRK11160 164 LTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANL 243 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888887655 3466677778888888899999999999999999999999999999999999999999999999888
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCC
Q 001041 946 SGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTM-TAIGISQSSSFSSDSNKAKSAAASIFAIIDRES 1024 (1178)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~ 1024 (1178)
.+...++..++..+..++++++|+++ .+|.+++|.++++..+... ...++..+......++++..+.+|+.++++.++
T Consensus 244 ~~~~~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~ 322 (574)
T PRK11160 244 TGLSQALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKP 322 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 88888888888888888888999988 4889999999998877644 345777788888899999999999999998776
Q ss_pred CCCCCCCCCCcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEE
Q 001041 1025 KIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITL 1104 (1178)
Q Consensus 1025 ~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~I 1104 (1178)
+.+..+. ....+..+.|+|+||+|+|+++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++
T Consensus 323 ~~~~~~~--~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i 399 (574)
T PRK11160 323 EVTFPTT--STAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILL 399 (574)
T ss_pred CCCCCcc--cCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 5322111 1112245789999999999753 346999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1105 DGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1105 DG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
||+|+++++.+++|++|++|||||+||+|||+|||++++ ++++|||+++|++.+++++||++ |+||||.|+
T Consensus 400 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~-~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vg 470 (574)
T PRK11160 400 NGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAA-PNASDEALIEVLQQVGLEKLLED-DKGLNAWLG 470 (574)
T ss_pred CCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCC-CccCHHHHHHHHHHcCCHHHHcC-ccccCchhc
Confidence 999999999999999999999999999999999999996 47999999999999999999999 999999875
No 55
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=1.5e-58 Score=572.64 Aligned_cols=530 Identities=14% Similarity=0.122 Sum_probs=415.1
Q ss_pred HHHHhHhhchhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 46 FYKLFTFADSAD----TALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASF 121 (1178)
Q Consensus 46 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 121 (1178)
+.++++|+.+.. +..+++.+++.++..++....+++.+.+++..... +...+......+.+.++++.++..+..|
T Consensus 79 ~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~-~~~~f~~~l~~~~l~~~~~~~~~~~~~~ 157 (659)
T TIGR00954 79 LDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRR-SPRNFAWILFKWFLIAPPASFINSAIKY 157 (659)
T ss_pred HHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666665543 23566666677777777888888999999876532 1112222222223333344445555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 122 LQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFI 201 (1178)
Q Consensus 122 ~~~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (1178)
+..++......++...+|..++++....++.+||+ ++|++.+|+++|++.+.+.+...+..++..++.+++..+.++.
T Consensus 158 ~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~--~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~ 235 (659)
T TIGR00954 158 LLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS--RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLT 235 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC--CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666677777888888888777778888874 6899999999999999999999999999999888877776665
Q ss_pred -HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Q 001041 202 -KGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSG 280 (1178)
Q Consensus 202 -~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 280 (1178)
.+|.+++++++.+|+.+++..++.+...+...+.++..++..+.+.|.++|+++||+|+.|+.+.+++.+...+..+..
T Consensus 236 ~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~ 315 (659)
T TIGR00954 236 ALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHL 315 (659)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988888877
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-h----cCCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 001041 281 VQEGLAAGIGLGMVMLIVF--CSYALSVWYGGKLIL-E----EGYNGGQVVNVMVA----VLTGSMSLGEASPCLSAFGA 349 (1178)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~-~----~~~~~~~~~~~~~~----~l~~~~~l~~~~~~~~~~~~ 349 (1178)
.+...+.+....+..++.. ...+++++.|..... . +.++.+.++..+.. +.....++..+......+..
T Consensus 316 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~ 395 (659)
T TIGR00954 316 NLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTR 395 (659)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766666655544444432 122223333332332 2 56777765542222 23445677778888889999
Q ss_pred HHHHHHHHHHHhccCCCCCcC-------CC--CC-------------cccCCCcccEEEEeEEEECCCCCCCccccceeE
Q 001041 350 GQAAAFKMFETINRKPEIDAY-------DT--KG-------------KILDDIRGDIELRDVYFSYPARPNEQIFSGFSI 407 (1178)
Q Consensus 350 ~~~~~~r~~~~~~~~~~~~~~-------~~--~~-------------~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l 407 (1178)
+..+..|++++++.+++.... .. .. .......+.|+++|++|+|++ ++++|+|+||
T Consensus 396 ~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~--~~~il~~isl 473 (659)
T TIGR00954 396 LAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPN--GDVLIESLSF 473 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCC--CCeeeecceE
Confidence 999999999998754332100 00 00 001112356999999999974 2469999999
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCC---
Q 001041 408 SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGK--- 484 (1178)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~--- 484 (1178)
++++||+++|+||||||||||+++|+|+++|++|+|.+++ |++++||||+|++|++|++|||.++.
T Consensus 474 ~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~ 542 (659)
T TIGR00954 474 EVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSE 542 (659)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChh
Confidence 9999999999999999999999999999999999999875 56899999999999999999999874
Q ss_pred ----CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHH
Q 001041 485 ----DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKV 560 (1178)
Q Consensus 485 ----~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~ 560 (1178)
+..++++++++++.+++++++.. |.|+||..+ .+.+||||||||++||||++++|+++|||||||+||+++++.
T Consensus 543 ~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~ 620 (659)
T TIGR00954 543 DMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGY 620 (659)
T ss_pred hhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHH
Confidence 33567889999999999998877 999999876 567999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeC
Q 001041 561 VQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHR 595 (1178)
Q Consensus 561 i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~ 595 (1178)
+.+.+++. ++|+|+||||++.+..||+|++|++
T Consensus 621 l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 621 MYRLCREF--GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 99998773 8999999999999999999999973
No 56
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=5.1e-59 Score=586.98 Aligned_cols=462 Identities=23% Similarity=0.327 Sum_probs=405.8
Q ss_pred hHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 707 TRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFA 786 (1178)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1178)
.++++.+.+++++.+...++++++..++....|+++..++|....... ......+.++++++.++..++.+++.++..
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (694)
T TIGR03375 135 KHWFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQA--FETLWVLAIGVALAIVFDFVLKTLRSYFLD 212 (694)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556677777777777777777778888888888887653221 111222333444455667788899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001041 787 VAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLA 866 (1178)
Q Consensus 787 ~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l~ 866 (1178)
..+.++..++|.++|+|++++|++| + ++++|++++|+ +|++.+++++...+...+..++.+++.++++++++|+++
T Consensus 213 ~~~~~~~~~l~~~~~~~ll~l~~~~-~--~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 288 (694)
T TIGR03375 213 VAGKKADLILSAKLFERVLGLRMEA-R--PASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLV 288 (694)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccc-C--CCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999998 5 47899999999 799999999999988888888888888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHHH
Q 001041 867 LIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVS 946 (1178)
Q Consensus 867 l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1178)
++.++.+|+.+++.+++.++.++..++..+..++..+.+.|+++|+++||+|+.|+.+.++|++..++..+...+.....
T Consensus 289 li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (694)
T TIGR03375 289 WVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLS 368 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCC
Q 001041 947 GGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKI 1026 (1178)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~ 1026 (1178)
.....+...+..+..++++++|++++.+|.+|+|+++++..+...+..|+..+......++.+..+.+|+.++++.+++.
T Consensus 369 ~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~ 448 (694)
T TIGR03375 369 NLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVER 448 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 88888888888888888999999999999999999999999999999999999999999999999999999999887653
Q ss_pred CCCCCCCCcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECC
Q 001041 1027 DPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG 1106 (1178)
Q Consensus 1027 ~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG 1106 (1178)
+... .....+...|.|+|+||+|+|+++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||
T Consensus 449 ~~~~-~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg 526 (694)
T TIGR03375 449 PEGT-RFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDG 526 (694)
T ss_pred CCCC-CCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 2211 111122345789999999999743 35799999999999999999999999999999999999999999999999
Q ss_pred cccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1107 VEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1107 ~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
+|+++++++++|++|++|||||+||+|||||||++++ ++++|||+++|++.++++|||++||+||||.++
T Consensus 527 ~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~-~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~ 596 (694)
T TIGR03375 527 VDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGA-PYADDEEILRAAELAGVTEFVRRHPDGLDMQIG 596 (694)
T ss_pred EEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCC-CCCCHHHHHHHHHHcChHHHHHhCcccccceec
Confidence 9999999999999999999999999999999999995 479999999999999999999999999999874
No 57
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=6e-59 Score=588.42 Aligned_cols=465 Identities=17% Similarity=0.170 Sum_probs=407.3
Q ss_pred hhHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 706 PTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFF 785 (1178)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1178)
.+++++.+.+++++.+...++++++..++....|+++..++|....... ......+.+.++++.++..++.+++.++.
T Consensus 141 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (710)
T TIGR03796 141 LLRALWRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGR--QDWLRPLLLGMGLTALLQGVLTWLQLYYL 218 (710)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566667667777777777777777788888888887653221 11122234445555666778899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001041 786 AVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQL 865 (1178)
Q Consensus 786 ~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l 865 (1178)
...+.++..++|.++|+|++++|++||+ ++++|++++|+++| +.+++++...+..++.+++.+++.++++++++|++
T Consensus 219 ~~~~~~~~~~l~~~~~~~ll~l~~~~~~--~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 295 (710)
T TIGR03796 219 RRLQIKLAVGMSARFLWHILRLPVRFFA--QRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVL 295 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHc--CCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 58999999999988 78999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHH
Q 001041 866 ALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMV 945 (1178)
Q Consensus 866 ~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 945 (1178)
++++++.+|+.+++.++..++.++..++.++..++..+.+.|+++|+++||++|.|+.+.++|.+...+..+...+....
T Consensus 296 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 375 (710)
T TIGR03796 296 TLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVL 375 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998888888899999999999999999999999999999999999999999988888888
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCC
Q 001041 946 SGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESK 1025 (1178)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~ 1025 (1178)
......+..++..+..++++++|++++.+|.+|+|.++++..+...+..|+..+......++.+..+.+|+.++++.+++
T Consensus 376 ~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e 455 (710)
T TIGR03796 376 TQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVD 455 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 88888888888888888999999999999999999999999999999999999999999999999999999999987765
Q ss_pred CCCCCC---C-CCcc-cCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCC
Q 001041 1026 IDPSDE---S-GTIL-EDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100 (1178)
Q Consensus 1026 ~~~~~~---~-~~~~-~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G 1100 (1178)
.+.... . ...+ +...|.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|
T Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G 534 (710)
T TIGR03796 456 PLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG 534 (710)
T ss_pred cccccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 432110 0 0111 2346789999999999853 35799999999999999999999999999999999999999999
Q ss_pred eEEECCcccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1101 HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1101 ~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
+|++||+|+++++.+++|++|++|||||+||+|||||||+++. ++++|+++++|++.++++|||.+||+||||.++
T Consensus 535 ~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~-~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~ 610 (710)
T TIGR03796 535 EILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWD-PTIPDADLVRACKDAAIHDVITSRPGGYDAELA 610 (710)
T ss_pred EEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCC-CCCCHHHHHHHHHHhCCHHHHHhCcCcccceec
Confidence 9999999999999999999999999999999999999999985 479999999999999999999999999999875
No 58
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.8e-61 Score=521.87 Aligned_cols=446 Identities=22% Similarity=0.297 Sum_probs=370.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Q 001041 721 ILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGA------GSFLLSPAQSYFFAVAGNKLIQ 794 (1178)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 794 (1178)
.+.+.++.++.-+.....+.+..++++....+ .... ......++++.+ .+.++.-++.++...+.+...+
T Consensus 217 v~~cl~ll~i~rli~~~~pi~~k~iv~~ltap-~~~~---~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR 292 (790)
T KOG0056|consen 217 VVFCLFLLIIGRLINVSLPILSKWIVDELTAP-DTFQ---YSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTR 292 (790)
T ss_pred HHHHHHHHHHHHHHhhhhHHhHHHHHHhhcCc-chhh---HHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHH
Confidence 34444444444455555566666666665532 1111 111222222222 2345666777777888999999
Q ss_pred HHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHH
Q 001041 795 RIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIA-FTASWQLALIILVML 873 (1178)
Q Consensus 795 ~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~-~~~~~~l~l~~l~~~ 873 (1178)
.+-.++|+|+..+++.|+- .+++|+++.-+.+..+.+. ++...+.++...+.-+.+++++. ...+|+++++++++.
T Consensus 293 ~ie~~lfrHlh~LSlrwHL--~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m 369 (790)
T KOG0056|consen 293 EIETELFRHLHNLSLRWHL--NRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMM 369 (790)
T ss_pred HHHHHHHHHHHhhceeeee--cccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHH
Confidence 9999999999999999998 4889999999998888887 77777777777777777777654 457999999999988
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHHHhhHHHHH
Q 001041 874 PLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGAS 953 (1178)
Q Consensus 874 pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 953 (1178)
.+.+...........+..|++..+..+..+...+++-+.+|||-||+|+++.++|.+...++.+..++.........-..
T Consensus 370 ~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Q 449 (790)
T KOG0056|consen 370 LLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQ 449 (790)
T ss_pred HHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88887777777777778888888888899999999999999999999999999999999999998887665555555444
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 001041 954 FFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESG 1033 (1178)
Q Consensus 954 ~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~ 1033 (1178)
..+..+..++.-.+.++++..+..|+|+++.|.+|+..+..|+...+.....+|+...-+|+++++++++++..+.+. .
T Consensus 450 n~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~-a 528 (790)
T KOG0056|consen 450 NGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPG-A 528 (790)
T ss_pred hhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCC-C
Confidence 455555555555667778889999999999999999999999999999999999999999999999998888754432 2
Q ss_pred CcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC
Q 001041 1034 TILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ 1113 (1178)
Q Consensus 1034 ~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~ 1113 (1178)
++....+|.|+|+||+|+|+ |++|||+||||+++||+++|+|||||+|||||+++|+||||.++|+|+|||+||+++.
T Consensus 529 ~pl~~~~G~i~fsnvtF~Y~--p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt 606 (790)
T KOG0056|consen 529 PPLKVTQGKIEFSNVTFAYD--PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVT 606 (790)
T ss_pred CCccccCCeEEEEEeEEecC--CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHH
Confidence 33444689999999999996 4678999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1114 LKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1114 l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
.++||++||+||||.+||++||.+||+||++ .|+||||.+|||+|++||-|.++|+||+|+||
T Consensus 607 ~~SLRs~IGVVPQDtvLFNdTI~yNIryak~-~AsneevyaAAkAA~IHdrIl~fPegY~t~VG 669 (790)
T KOG0056|consen 607 QSSLRSSIGVVPQDTVLFNDTILYNIRYAKP-SASNEEVYAAAKAAQIHDRILQFPEGYNTRVG 669 (790)
T ss_pred HHHHHHhcCcccCcceeecceeeeheeecCC-CCChHHHHHHHHHhhHHHHHhcCchhhhhhhh
Confidence 9999999999999999999999999999975 89999999999999999999999999999986
No 59
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=6e-58 Score=560.86 Aligned_cols=452 Identities=20% Similarity=0.212 Sum_probs=391.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 718 IPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIR 797 (1178)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 797 (1178)
++.+..+++++++.+++.+..++++++++|........ ......+.++++++.++..++.+++.+..+..+.++..++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 80 (529)
T TIGR02857 2 RRALALLGLLGALGALLIIAQAWLLARVIDGLISAGEP-LAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLR 80 (529)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777788888899999999876421111 12233445555666777888899999999999999999999
Q ss_pred HHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001041 798 SMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIG 877 (1178)
Q Consensus 798 ~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l~l~~l~~~pl~~ 877 (1178)
.++|++++++|..||+ ++++|++++|+++|++.+++.+...+..++..++.+++.++++++++|.+++++++.+|+..
T Consensus 81 ~~l~~~l~~~~~~~~~--~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~ 158 (529)
T TIGR02857 81 ERLLAAVAALGPGWLQ--GRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIP 158 (529)
T ss_pred HHHHHHHHhCCchhhc--cCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 9999999999999999 58999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHHHhhHHHHHHHHH
Q 001041 878 VSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLL 957 (1178)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 957 (1178)
++.+...++.++..++.++..++..+.+.|+++|+++||+|+.|+++.++|++..++..+...+..+.......+..++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (529)
T TIGR02857 159 IFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFA 238 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888999999999999999999999999999999999999999888887777766666666666
Q ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccc
Q 001041 958 FAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILE 1037 (1178)
Q Consensus 958 ~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~ 1037 (1178)
.+...+++.++++.+.+|.+|+|.++++..+...+..|+..+......++++..+.+|+.++++.+++..+. ...+.
T Consensus 239 ~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~---~~~~~ 315 (529)
T TIGR02857 239 TLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGK---APVTA 315 (529)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC---cCCCC
Confidence 666666566677777799999999999999999999999999999999999999999999999854322111 11111
Q ss_pred CccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHH
Q 001041 1038 DVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWL 1117 (1178)
Q Consensus 1038 ~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~L 1117 (1178)
+..+.|+|+||+|+|+++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++
T Consensus 316 ~~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~l 394 (529)
T TIGR02857 316 APAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSW 394 (529)
T ss_pred CCCCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHH
Confidence 123679999999999854 3479999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1118 RQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1118 R~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
|++|++|||||++|+|||||||++|. ++++|+++++|++.++++|||++||+||||.++
T Consensus 395 r~~i~~v~Q~~~lf~~ti~~Ni~~~~-~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~ 453 (529)
T TIGR02857 395 RDQIAWVPQHPFLFAGTIAENIRLAR-PDASDAEIRRALERAGLDEFVAALPQGLDTLIG 453 (529)
T ss_pred HhheEEEcCCCcccCcCHHHHHhccC-CCCCHHHHHHHHHHcCcHHHHHhCcccccchhc
Confidence 99999999999999999999999985 478999999999999999999999999999875
No 60
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.4e-57 Score=573.29 Aligned_cols=462 Identities=21% Similarity=0.285 Sum_probs=404.7
Q ss_pred hHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 707 TRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFA 786 (1178)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1178)
+++++.+.++++..+...++++++..++....++++..++|....... ......+.++++++.++..++.+++.++..
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~--~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~ 204 (694)
T TIGR01846 127 FSWFIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRG--LSTLSVLALAMLAVAIFEPALGGLRTYLFA 204 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555666666666667777777777788888888887753221 112233344455566677888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001041 787 VAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLA 866 (1178)
Q Consensus 787 ~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l~ 866 (1178)
..+.++..++|.++|+|++++|++||+ ++++|++++|+ +|++.+++++...+..++..++.+++.++++++++|+++
T Consensus 205 ~~~~~~~~~l~~~~~~~l~~l~~~~f~--~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 281 (694)
T TIGR01846 205 HLTSRIDVELGARLYRHLLGLPLGYFE--SRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLT 281 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHcC--CCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 58999999999 699999999998888888888877778889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHHH
Q 001041 867 LIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVS 946 (1178)
Q Consensus 867 l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1178)
+++++.+|+++++.++..++.++..++..+..++.++.+.|+++|+++||+||.|+.+.++|++..++..+...+..+..
T Consensus 282 li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (694)
T TIGR01846 282 GVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLG 361 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988888888888889999999999999999999999999999999999999999999988888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCC
Q 001041 947 GGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKI 1026 (1178)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~ 1026 (1178)
.....+..++..+..++++++|++++.+|.+|+|+++++..+...+..|+..+......++.+..+.+|+.++++.+++.
T Consensus 362 ~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~ 441 (694)
T TIGR01846 362 NIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEP 441 (694)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 88888888888888889999999999999999999999999999999999999999999999999999999999877653
Q ss_pred CCCCCCCCcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECC
Q 001041 1027 DPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG 1106 (1178)
Q Consensus 1027 ~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG 1106 (1178)
+.. .....+...|.|+|+||+|+|+++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|+|||
T Consensus 442 ~~~--~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg 518 (694)
T TIGR01846 442 RSA--GLAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDG 518 (694)
T ss_pred cCC--CCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 221 111122345789999999999743 34699999999999999999999999999999999999999999999999
Q ss_pred cccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1107 VEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1107 ~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
+|+++++.+++|++|++|||||+||+|||||||+++. ++++++++++|++.++++|+|++||+||||.++
T Consensus 519 ~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~-~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~ 588 (694)
T TIGR01846 519 VDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCN-PGAPFEHVIHAAKLAGAHDFISELPQGYNTEVG 588 (694)
T ss_pred EehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCC-CCCCHHHHHHHHHHcChHHHHHhCcCccCcEec
Confidence 9999999999999999999999999999999999985 479999999999999999999999999999875
No 61
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=3.3e-57 Score=561.32 Aligned_cols=462 Identities=28% Similarity=0.399 Sum_probs=400.0
Q ss_pred HhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 708 RRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAV 787 (1178)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1178)
++++.+.+++++.++..+++.++..+.....++++..+++....... ........+.++++.++..++.+++.++..+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 91 (582)
T PRK11176 14 RRLWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKAD--RSVLKWMPLVVIGLMILRGITSFISSYCISW 91 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566666666666666666666677778877776553211 1111122223344566677888888889999
Q ss_pred HHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001041 788 AGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLAL 867 (1178)
Q Consensus 788 ~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l~l 867 (1178)
.+.++..++|.++++++++.|.++|+ +..+|++++|+++|++.+++.+.+.+..++.+++.+++.++++++++|++++
T Consensus 92 ~~~~~~~~lr~~~~~~l~~~~~~~~~--~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 169 (582)
T PRK11176 92 VSGKVVMTMRRRLFGHMMGMPVSFFD--KQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSL 169 (582)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHhC--CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 5889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHHHh
Q 001041 868 IILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSG 947 (1178)
Q Consensus 868 ~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 947 (1178)
++++++|+.+++.+...+++++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+...+......
T Consensus 170 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (582)
T PRK11176 170 ILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASS 249 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888999999988899999999999999999999999999999999999999999999999998888887
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCCC
Q 001041 948 GGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKID 1027 (1178)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~ 1027 (1178)
....+..++..+...+++++|++++.+|.+++|+++++..+...+..|+..+......++.+..+.+|+.++++.+++.+
T Consensus 250 ~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 329 (582)
T PRK11176 250 ISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKD 329 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCC
Confidence 77777777777778888899999999999999999999999999999999999999999999999999999998665422
Q ss_pred CCCCCCCcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCc
Q 001041 1028 PSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGV 1107 (1178)
Q Consensus 1028 ~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~ 1107 (1178)
... ...++..+.|+|+||+|+|+++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+
T Consensus 330 ~~~---~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~ 405 (582)
T PRK11176 330 EGK---RVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGH 405 (582)
T ss_pred CCC---cCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCE
Confidence 111 1122334679999999999753 357999999999999999999999999999999999999999999999999
Q ss_pred ccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1108 EIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1108 dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
|+++++.+++|++|++|||||+||+|||||||++|++++++|+|+++|++.+++++||++||+||||.++
T Consensus 406 ~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig 475 (582)
T PRK11176 406 DLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIG 475 (582)
T ss_pred EhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeC
Confidence 9999999999999999999999999999999999965458999999999999999999999999999875
No 62
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=9.9e-57 Score=556.64 Aligned_cols=460 Identities=27% Similarity=0.411 Sum_probs=409.9
Q ss_pred hhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 710 LAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAG 789 (1178)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (1178)
++.+.++.++.+++++++.++.+++.+..++++..+++....... ......+..+++++.++..++.+++.++.+..+
T Consensus 5 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 82 (571)
T TIGR02203 5 LWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRD--RSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVS 82 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455667778888888888888888888888888886553221 111222344556667777888899999999999
Q ss_pred HHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001041 790 NKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALII 869 (1178)
Q Consensus 790 ~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l~l~~ 869 (1178)
.++...+|..+++++++.|.++|+ +.++|++++|+++|++.+++++.+.+..++.+++.+++.++++++++|++++++
T Consensus 83 ~~~~~~lr~~l~~~~~~~~~~~~~--~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~ 160 (571)
T TIGR02203 83 NKVVRDIRVRMFEKLLGLPVSFFD--RQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIV 160 (571)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhC--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 999999999999999999999999 588999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHHHhhH
Q 001041 870 LVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGG 949 (1178)
Q Consensus 870 l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 949 (1178)
++..|+.+++.++..++.++..++.++..++..+.+.|.++|+++||+++.++++.++|.+..++..+...+.....+..
T Consensus 161 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (571)
T TIGR02203 161 VVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSIS 240 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCCCCC
Q 001041 950 FGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPS 1029 (1178)
Q Consensus 950 ~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~ 1029 (1178)
..+...+..+..++++++|++++.+|.+|+|.++++..+...+..|+..+......++++..+.+|+.++++.+++.+..
T Consensus 241 ~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 320 (571)
T TIGR02203 241 SPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTG 320 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 88888888888888999999999999999999999999999999999999999999999999999999999876543211
Q ss_pred CCCCCcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCccc
Q 001041 1030 DESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI 1109 (1178)
Q Consensus 1030 ~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI 1109 (1178)
. ....+..++|+|+||+|+|+++ +.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+
T Consensus 321 ~---~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i 396 (571)
T TIGR02203 321 T---RAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDL 396 (571)
T ss_pred C---CCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeH
Confidence 1 1112235689999999999754 35799999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1110 QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1110 ~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
++++.+++|++|++|||||+||+|||||||.++++++++|+|+++|++.+++++++.+||+||||+|+
T Consensus 397 ~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~ 464 (571)
T TIGR02203 397 ADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIG 464 (571)
T ss_pred HhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceec
Confidence 99999999999999999999999999999999863379999999999999999999999999999875
No 63
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=9e-57 Score=557.53 Aligned_cols=459 Identities=21% Similarity=0.261 Sum_probs=383.9
Q ss_pred HhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 708 RRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAV 787 (1178)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1178)
+++..+.+++++.+...+++.++..++....++++..++|...............++++++++.++..++.+++.+..+.
T Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (592)
T PRK10790 12 KRLLAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNR 91 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555667777777777777778888888889998887653211100011112233444455677788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001041 788 AGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLAL 867 (1178)
Q Consensus 788 ~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l~l 867 (1178)
.+.+...++|.++|++++++|++||+ ++++|++++|+++|++.+++.+...+..++.++..+++.++++++++|++++
T Consensus 92 ~~~~~~~~lr~~l~~~l~~~~~~~~~--~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 169 (592)
T PRK10790 92 AAVGVVQQLRTDVMDAALRQPLSAFD--TQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMAL 169 (592)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHhC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 5899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHHHh
Q 001041 868 IILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSG 947 (1178)
Q Consensus 868 ~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 947 (1178)
++++++|+.++......++.++..++.++..++.+..+.|.++|+++||+|+.|+++.++|.+..++..+...+.....+
T Consensus 170 i~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (592)
T PRK10790 170 VAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDG 249 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888888888888888888888999999999999999999999999999999998888887776666554
Q ss_pred hH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCC
Q 001041 948 GG-FGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKI 1026 (1178)
Q Consensus 948 ~~-~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~ 1026 (1178)
.. ..+..++..+...+++++++. +..|.+++|.++++..+...+..|+..+......++++..+.+|+.++++.+++.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~ 328 (592)
T PRK10790 250 FLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQ 328 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 33 223333333332333333333 5789999999999999999999999999999999999999999999999865432
Q ss_pred CCCCCCCCcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECC
Q 001041 1027 DPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG 1106 (1178)
Q Consensus 1027 ~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG 1106 (1178)
.. . . ..+...++|+|+||+|+|++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||
T Consensus 329 ~~-~--~-~~~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg 402 (592)
T PRK10790 329 YG-N--D-DRPLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDG 402 (592)
T ss_pred CC-C--C-ccCCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECC
Confidence 11 1 1 11223578999999999974 34699999999999999999999999999999999999999999999999
Q ss_pred cccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1107 VEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1107 ~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
+|+++++.+++|++|++|||||+||+|||||||++|+ +++|+|+++|++.++++++|.+||+||||.++
T Consensus 403 ~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~--~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~ 471 (592)
T PRK10790 403 RPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR--DISEEQVWQALETVQLAELARSLPDGLYTPLG 471 (592)
T ss_pred EEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC--CCCHHHHHHHHHHcCcHHHHHhcccccccccc
Confidence 9999999999999999999999999999999999995 68999999999999999999999999999874
No 64
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=2.2e-55 Score=544.73 Aligned_cols=465 Identities=29% Similarity=0.441 Sum_probs=398.8
Q ss_pred HhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 708 RRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAV 787 (1178)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1178)
+.++.+.++.++.+.+.+++.++..++....++++..++|..+.... ......+..+++++.++..++.+++.++...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (576)
T TIGR02204 7 AALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDS--SGLLNRYFAFLLVVALVLALGTAARFYLVTW 84 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566667777777777888888888889988887543211 1112223333444555566777888899999
Q ss_pred HHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001041 788 AGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLAL 867 (1178)
Q Consensus 788 ~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l~l 867 (1178)
.+.++..++|..++++++++|.++|+ +.++|++++|+++|++.+++++...+..++..++.+++.++++++++|++++
T Consensus 85 ~~~~~~~~lr~~l~~~l~~~~~~~~~--~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 162 (576)
T TIGR02204 85 LGERVVADIRRAVFAHLISLSPSFFD--KNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTS 162 (576)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHc--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999999999 4789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHHHh
Q 001041 868 IILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSG 947 (1178)
Q Consensus 868 ~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 947 (1178)
++++.+|+.+++.+++.++.++..++.++..++..+.+.|.++|+++||+|+.|+++.++|++..++..+...+......
T Consensus 163 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (576)
T TIGR02204 163 LVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRA 242 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888899999999999999999999999999999999999999999999999999988888777777666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCCC
Q 001041 948 GGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKID 1027 (1178)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~ 1027 (1178)
....+..++.....++++++|++++.+|.+|+|.++++..+...+..|+..+......++.+..+.+|+.++++.+++.+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~ 322 (576)
T TIGR02204 243 LLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIK 322 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCC
Confidence 66666666666667778889999999999999999999999999999999999999999999999999999998765432
Q ss_pred CCCCCCCcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCc
Q 001041 1028 PSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGV 1107 (1178)
Q Consensus 1028 ~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~ 1107 (1178)
..........+..+.|+|+||+|+|++++++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+
T Consensus 323 ~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~ 402 (576)
T TIGR02204 323 APAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGV 402 (576)
T ss_pred CCCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCE
Confidence 11111111112346799999999998543357999999999999999999999999999999999999999999999999
Q ss_pred ccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1108 EIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1108 dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
|+++++.+++|++|++|||||++|+|||||||.+|. ++++|++++++++.+++++++.++|+|+||+++
T Consensus 403 ~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~-~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~ 471 (576)
T TIGR02204 403 DLRQLDPAELRARMALVPQDPVLFAASVMENIRYGR-PDATDEEVEAAARAAHAHEFISALPEGYDTYLG 471 (576)
T ss_pred EHHhcCHHHHHHhceEEccCCccccccHHHHHhcCC-CCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeC
Confidence 999999999999999999999999999999999985 468999999999999999999999999999875
No 65
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=2.2e-55 Score=540.89 Aligned_cols=460 Identities=21% Similarity=0.265 Sum_probs=394.5
Q ss_pred hHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 707 TRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFA 786 (1178)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1178)
+++++.+.+++++.++.++++.++..++....+++++.++|....... ...+.+.++++.++..+..++..++..
T Consensus 7 ~~~l~~~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (585)
T TIGR01192 7 YVRALSYLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD-----VLPTLALWAGFGVFNTIAYVLVAREAD 81 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555667778888888888888888888899999999987653211 111222222333444555556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001041 787 VAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLA 866 (1178)
Q Consensus 787 ~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l~ 866 (1178)
....++..++|.++|+|++++|++||+ ++++|++++|+++|++.++..+.+.+..++..++.+++.+++++.++|.++
T Consensus 82 ~~~~~~~~~lr~~~~~~l~~l~~~~~~--~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 159 (585)
T TIGR01192 82 RLAHGRRATLLTEAFGRIISMPLSWHQ--QRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLS 159 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777778888999999999999999 588999999999999999999999999988888888888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHHH
Q 001041 867 LIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVS 946 (1178)
Q Consensus 867 l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1178)
+++++++|+.+++...+.++.++..++.++..++..+.+.|+++|+++||+|+.|+.+.+++.+..++..+...+..+..
T Consensus 160 li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (585)
T TIGR01192 160 IVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWW 239 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888888888888889999999999999999999999999999999999999888888877777
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCC
Q 001041 947 GGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKI 1026 (1178)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~ 1026 (1178)
+....+...+..+..++++++|++++.+|.+++|.++++..++..+..|+..+.+....++.+..+.+|+.++++.+++.
T Consensus 240 ~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~ 319 (585)
T TIGR01192 240 ALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQR 319 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 77777777777777788889999999999999999999999999999999999999999999999999999999866543
Q ss_pred CCCCCCCCcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECC
Q 001041 1027 DPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG 1106 (1178)
Q Consensus 1027 ~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG 1106 (1178)
++... ....+...+.|+|+||+|+|+++ .++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++||
T Consensus 320 ~~~~~-~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g 396 (585)
T TIGR01192 320 EEPAD-APELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDG 396 (585)
T ss_pred cCCcc-CCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECC
Confidence 21111 11112235679999999999742 3599999999999999999999999999999999999999999999999
Q ss_pred cccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1107 VEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1107 ~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
+|+++++.+++|+++++|||||++|++||+|||+++. ++++|+|+++|++.+++++++.++|+|+||.++
T Consensus 397 ~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~-~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~ 466 (585)
T TIGR01192 397 IDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGR-EGATDEEVYEAAKAAAAHDFILKRSNGYDTLVG 466 (585)
T ss_pred EEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCC-CCCCHHHHHHHHHHhCcHHHHHhccccccchhc
Confidence 9999999999999999999999999999999999985 478999999999999999999999999999864
No 66
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-55 Score=498.85 Aligned_cols=446 Identities=22% Similarity=0.262 Sum_probs=395.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 724 GTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEK 803 (1178)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ 803 (1178)
..++..+.+++.....+++...++..+.... ......++..+++..+++.++.+.+......++.++..+||.+++++
T Consensus 5 ~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~--~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~ 82 (559)
T COG4988 5 SALLAVLSGIAIIAQAALLADILTKLIEGQL--FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDK 82 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666667777777776654321 23344566667777888999999999999999999999999999999
Q ss_pred HHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 001041 804 VIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQ 883 (1178)
Q Consensus 804 ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l~l~~l~~~pl~~~~~~~~ 883 (1178)
+.+++..|-. ..|+|+..+.++..++.++.++...++.++.+.+.++..++.+++.+|.-++++++.+|++.++++.+
T Consensus 83 l~~~gp~~~~--~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilv 160 (559)
T COG4988 83 LAKLGPAFIA--QKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILV 160 (559)
T ss_pred HHhCChhhhc--CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 58999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHHHhhHHHHHHHHHHHHHHH
Q 001041 884 MKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAA 963 (1178)
Q Consensus 884 ~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 963 (1178)
....++.+++.-.....+++++.|.++|+.|+|+|++.+...++..+..+++++..++..+..-....+..++.++..++
T Consensus 161 g~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAl 240 (559)
T COG4988 161 GLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIAL 240 (559)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888888888888888888888
Q ss_pred HHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccCcccc
Q 001041 964 SFYAGARLVED-GKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGE 1042 (1178)
Q Consensus 964 ~~~~g~~l~~~-g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~ 1042 (1178)
+..+.+..... |.+++...+.++....-++.|+..+.+.++.-..+.++.+.++.+++.|.+..+.............+
T Consensus 241 vAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~e 320 (559)
T COG4988 241 VAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIE 320 (559)
T ss_pred HHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCce
Confidence 77666666666 89999999999999999999999999999999999999999999998776543322111111112345
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
|+++|++|+|+++ +++++|+||+++||+++||||+||||||||+++|+||.+|++|+|++||+|+++++.++||++++
T Consensus 321 i~~~~l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~ 398 (559)
T COG4988 321 ISLENLSFRYPDG--KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQIS 398 (559)
T ss_pred eeecceEEecCCC--CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHee
Confidence 6667999999864 37999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1123 LVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1123 iV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
+|||+|+||+|||||||+++++ ++|||||++|++.+++.||+.. |+|+||+++
T Consensus 399 ~v~Q~p~lf~gTireNi~l~~~-~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ig 451 (559)
T COG4988 399 WVSQNPYLFAGTIRENILLARP-DASDEEIIAALDQAGLLEFVPK-PDGLDTVIG 451 (559)
T ss_pred eeCCCCccccccHHHHhhccCC-cCCHHHHHHHHHHhcHHHhhcC-CCcccchhc
Confidence 9999999999999999999964 7999999999999999999999 999999985
No 67
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=2.2e-55 Score=540.40 Aligned_cols=438 Identities=21% Similarity=0.338 Sum_probs=379.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Q 001041 732 GVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSW 811 (1178)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~f 811 (1178)
.++....+++++.++|........ ......|+++++++.++..++.++..++.+..+.+...++|.++|+|++++|++|
T Consensus 8 ~~~~~~~p~~~~~iid~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~ 86 (569)
T PRK10789 8 AMLQLIPPKVVGIIVDGVTEQHMT-TGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEF 86 (569)
T ss_pred HHHHHHHHHHHHHHHHHhccCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 334455677778888865432111 1122334455555566677788888889999999999999999999999999999
Q ss_pred ccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001041 812 FDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIA-FTASWQLALIILVMLPLIGVSGYTQMKFMKGF 890 (1178)
Q Consensus 812 Fd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~-~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~ 890 (1178)
|+ ++++|++++|+++|++.++..+...+..++..++.+++.++++ ++++|++++++++++|+.+++.+.+.++.++.
T Consensus 87 ~~--~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~ 164 (569)
T PRK10789 87 YL--RHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHER 164 (569)
T ss_pred Hc--CCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 5899999999999999999888888888888877766666655 58999999999999999999888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 001041 891 SADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGAR 970 (1178)
Q Consensus 891 ~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 970 (1178)
.++.++..++..+.+.|+++|+++||+|+.|+.+.++|.+..++..+...+.....+...++...+..+..++++++|++
T Consensus 165 ~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 244 (569)
T PRK10789 165 FKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSW 244 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999999999999999999888888887777777777777777788899999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccCccccEEEeeeEE
Q 001041 971 LVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSF 1050 (1178)
Q Consensus 971 l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~nVsf 1050 (1178)
++.+|.+|+|.++++..+...+..|+..+.+....++.+..+.+|+.++++.+++.+... ...++..++|+|+||+|
T Consensus 245 lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~---~~~~~~~~~I~~~~v~~ 321 (569)
T PRK10789 245 MVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGS---EPVPEGRGELDVNIRQF 321 (569)
T ss_pred HHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC---CCCCCCCCcEEEEEEEE
Confidence 999999999999999999999999999999999999999999999999998765432111 11122356899999999
Q ss_pred eCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcccccccccc
Q 001041 1051 KYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVL 1130 (1178)
Q Consensus 1051 ~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~L 1130 (1178)
+|+.+ +.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|++|||||+|
T Consensus 322 ~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l 400 (569)
T PRK10789 322 TYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFL 400 (569)
T ss_pred ECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCee
Confidence 99743 35799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1131 FNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1131 F~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
|+|||||||++|+ ++++|+++++|++.++++++|.+||+||||.++
T Consensus 401 f~~ti~~Ni~~~~-~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~ 446 (569)
T PRK10789 401 FSDTVANNIALGR-PDATQQEIEHVARLASVHDDILRLPQGYDTEVG 446 (569)
T ss_pred ccccHHHHHhcCC-CCCCHHHHHHHHHHcCCHHHHHhCcCcccceec
Confidence 9999999999995 478999999999999999999999999999874
No 68
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-55 Score=493.60 Aligned_cols=444 Identities=22% Similarity=0.302 Sum_probs=370.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc--CCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 725 TIAAMANGVILPIYGLLISSVIETFF--KPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFE 802 (1178)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~ 802 (1178)
+.+.+.+-......+.++...++..- ...+.........+..|.+..+.+.+|..++.+.+.++.+++.++.-.++|+
T Consensus 36 l~~l~~aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~ 115 (591)
T KOG0057|consen 36 LGLLLGAKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFR 115 (591)
T ss_pred HHHHHhhhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333345566667777887777652 1111011111234566777888899999999999999999999999999999
Q ss_pred HHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHH
Q 001041 803 KVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLI-IAFTASWQLALIILVMLPLIGVSGY 881 (1178)
Q Consensus 803 ~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii-~~~~~~~~l~l~~l~~~pl~~~~~~ 881 (1178)
+++.++++||. +..+|.|.+++.+-...|..++...+..++..++-+..... +-.-..+..+++.+..+..+..+..
T Consensus 116 ~~~~ld~~~~~--~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti 193 (591)
T KOG0057|consen 116 HLMSLDLSFFL--SRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTI 193 (591)
T ss_pred HHHhhhHHhhc--CCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEE
Confidence 99999999999 47899999999999999999999998888888776655553 3344677777777777777777777
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHHHhhHHHHHHHHHHHHH
Q 001041 882 TQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFY 961 (1178)
Q Consensus 882 ~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 961 (1178)
...++..+..+++..+...++..+.|++.|..+||+||.|+++.++|+..+.++.+...+.....+...-....+.....
T Consensus 194 ~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~ 273 (591)
T KOG0057|consen 194 VVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVAL 273 (591)
T ss_pred eehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHH
Confidence 77777778888899999999999999999999999999999999999999999999888877766665555555555666
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccCccc
Q 001041 962 AASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKG 1041 (1178)
Q Consensus 962 ~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g 1041 (1178)
+.+.+.|..-+.+|.+|+|+++.+..++..+..|+..+.....++.++..-+..++...+....+.. .+.+....+|
T Consensus 274 ~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~---~~~~i~~~~~ 350 (591)
T KOG0057|consen 274 TFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQE---AALPIELFGG 350 (591)
T ss_pred HHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhh---ccCCcccCCC
Confidence 6677778777889999999999999999999999999999988888888877777665443322211 1112233467
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhc
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1178)
.|+|+||+|+|+ |+++||+|+||+|++||||||||++||||||++++|+||+| ++|+|+|||+||++++++++|+.|
T Consensus 351 ~I~F~dV~f~y~--~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~I 427 (591)
T KOG0057|consen 351 SIEFDDVHFSYG--PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSI 427 (591)
T ss_pred cEEEEeeEEEeC--CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhhe
Confidence 899999999997 35569999999999999999999999999999999999999 999999999999999999999999
Q ss_pred cccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1122 GLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1122 siV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
|+||||..||++||.+||.||++ .+|+||+.++||+|++||-|.+||+||+|.|+
T Consensus 428 g~VPQd~~LFndTIl~NI~YGn~-sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VG 482 (591)
T KOG0057|consen 428 GVVPQDSVLFNDTILYNIKYGNP-SASDEEVVEACKRAGLHDVISRLPDGYQTLVG 482 (591)
T ss_pred eEeCCcccccchhHHHHhhcCCC-CcCHHHHHHHHHHcCcHHHHHhccccchhhHh
Confidence 99999999999999999999964 89999999999999999999999999999986
No 69
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=1.1e-54 Score=538.04 Aligned_cols=460 Identities=22% Similarity=0.273 Sum_probs=389.7
Q ss_pred hHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 707 TRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFA 786 (1178)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1178)
++++..+.++++..+.+.+++.++..++....++++..++|...... ......++++++.++..+..++..++..
T Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (588)
T PRK13657 7 YARVLQYLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKG-----DIFPLLAAWAGFGLFNIIAGVLVARHAD 81 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666677777777777777777888888888888765321 1111223333333444444555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001041 787 VAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLA 866 (1178)
Q Consensus 787 ~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l~ 866 (1178)
....++..+++.++|+|++++|..+|+ +.++|++++|+++|++.+...+...+..++..++.+++.++++++++|+++
T Consensus 82 ~~~~~~~~~l~~~l~~~l~~~~~~~~~--~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 159 (588)
T PRK13657 82 RLAHRRRLAVLTEYFERIIQLPLAWHS--QRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLS 159 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHC--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666667778999999999999999 589999999999999999999888888888888888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHHH
Q 001041 867 LIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVS 946 (1178)
Q Consensus 867 l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1178)
+++++++|+.+++.++..++.++..++.++..++..+.+.|.++|+++||+|+.++.+.++|.+..++..+...+.....
T Consensus 160 l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (588)
T PRK13657 160 LVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWW 239 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888888888888888888999999999999999999999999999999999999999888887777
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCC
Q 001041 947 GGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKI 1026 (1178)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~ 1026 (1178)
.....+..++..+..++++++|++++.+|.+|+|+++++..+...+..|+..+......+..+..+.+|+.++++.+++.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~ 319 (588)
T PRK13657 240 ALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDV 319 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 77777777777778888899999999999999999999999999999999999999999999999999999998865542
Q ss_pred CCCCCCCCcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECC
Q 001041 1027 DPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG 1106 (1178)
Q Consensus 1027 ~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG 1106 (1178)
+... .....++..+.|+|+||+|+|+++ +++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|+|||
T Consensus 320 ~~~~-~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g 396 (588)
T PRK13657 320 RDPP-GAIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDG 396 (588)
T ss_pred CCCC-CCCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECC
Confidence 2111 111112234679999999999742 4699999999999999999999999999999999999999999999999
Q ss_pred cccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1107 VEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1107 ~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
+|+++++.+++|++|++|||||+||+|||||||++++ ++++|+|+++|++.++++++|.+||+|+||.++
T Consensus 397 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~-~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~ 466 (588)
T PRK13657 397 TDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGR-PDATDEEMRAAAERAQAHDFIERKPDGYDTVVG 466 (588)
T ss_pred EEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCC-CCCCHHHHHHHHHHhCHHHHHHhCcccccchhc
Confidence 9999999999999999999999999999999999995 478999999999999999999999999999874
No 70
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.3e-54 Score=478.72 Aligned_cols=452 Identities=21% Similarity=0.191 Sum_probs=362.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 717 EIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWA--LIYLALGAGSFLLSPAQSYFFAVAGNKLIQ 794 (1178)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (1178)
+++.+.++++++++..........+-++++......+.. ....+++ ...=.+++.+.+..|...+..|.+..++..
T Consensus 14 ~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~~--~~f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~AtfrvL~ 91 (573)
T COG4987 14 HKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGLA--YIFNVMLPSAGVRGLAILRTAARYVERLVSHDATFRVLS 91 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 555666666666655544444444444444432211110 1111111 122246788889999999999999999999
Q ss_pred HHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001041 795 RIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLP 874 (1178)
Q Consensus 795 ~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l~l~~l~~~p 874 (1178)
++|.++|+++...+..-.. +.++||++||++.|++.+|+.+-..+.+.+..++..++..+.+.+++|.+++.+..++.
T Consensus 92 ~lRv~~f~kl~p~sp~~~~--r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~~~ll 169 (573)
T COG4987 92 ALRVRLFEKLEPLSPALLL--RYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLILL 169 (573)
T ss_pred HHHHHHHHhhccCChHHHH--hcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999999999998888 58899999999999999999999999999999999999999999999999887765555
Q ss_pred HH-HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHHHhhHHHHH
Q 001041 875 LI-GVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGAS 953 (1178)
Q Consensus 875 l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 953 (1178)
+. +++...+.++-++..++.+...+...+++.|.+.|....+.||+++.+.+.+.+..+.+.+...+...+......+.
T Consensus 170 ~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~a~~ 249 (573)
T COG4987 170 LLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAIL 249 (573)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 45566777777888889999999999999999999999999999999999999999999998888888887777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHh-hchhhHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 001041 954 FFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSS-SFSSDSNKAKSAAASIFAIIDRESKIDPSDES 1032 (1178)
Q Consensus 954 ~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~ 1032 (1178)
.++..+..+..+.+.+..+..|..+.-....+.+.......++.-+. ..+....+...|+.|+.++++.+++...+. .
T Consensus 250 ~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~~-~ 328 (573)
T COG4987 250 LLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFPD-E 328 (573)
T ss_pred HHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCCc-c
Confidence 77766666644444555566666653333333333233344444444 566788999999999999999887765431 1
Q ss_pred CCcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCC
Q 001041 1033 GTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL 1112 (1178)
Q Consensus 1033 ~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i 1112 (1178)
..+.. .. .++++||+|+||++ +++||+|+||++++||||||||||||||||++++|.|-|||++|+|+++|.|++.+
T Consensus 329 ~~~~~-~~-~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l 405 (573)
T COG4987 329 QTATT-GQ-ALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASL 405 (573)
T ss_pred ccCCc-cc-eeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhC
Confidence 11111 12 79999999999864 55799999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1113 QLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1113 ~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
+.+++|+.|++++|.++||+||+||||+++++ ++||||+|+|++++++++++++.|+||||.++
T Consensus 406 ~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~-~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lg 469 (573)
T COG4987 406 DEQALRETISVLTQRVHLFSGTLRDNLRLANP-DASDEELWAALQQVGLEKLLESAPDGLNTWLG 469 (573)
T ss_pred ChhhHHHHHhhhccchHHHHHHHHHHHhhcCC-CCCHHHHHHHHHHcCHHHHHHhChhhhhchhc
Confidence 99999999999999999999999999999964 89999999999999999999999999999885
No 71
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=1.5e-53 Score=522.07 Aligned_cols=453 Identities=15% Similarity=0.123 Sum_probs=372.3
Q ss_pred hHhhhhhcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 707 TRRLAYLNK-PEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFF 785 (1178)
Q Consensus 707 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1178)
.++++.+.+ ++++.++++++++++.++.....+++++.+++...... .. ....++++.++..++.++..++.
T Consensus 5 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~ 77 (555)
T TIGR01194 5 IGEILALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFLG----QG---SLFSFGGLCLLALLFRIGADIFP 77 (555)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc----ch---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667 88888888888888888877777788877765321100 00 11123344556667888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001041 786 AVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQL 865 (1178)
Q Consensus 786 ~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l 865 (1178)
+..+.++..++|.++|+|++++|++||+ ++++|++++|+++|++.+++++.. +..++..++.++++++++++++|.+
T Consensus 78 ~~~~~~~~~~lR~~l~~~l~~~~~~~~~--~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~L 154 (555)
T TIGR01194 78 AYAGMHIIANLRIALCEKILGAPIEEID--RRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVPM 154 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHH--hcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999999999 589999999999999999999864 7788888888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchH--HHHHHHHHHhhhHHHhhhHHH
Q 001041 866 ALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEE--KVMQLYKKKCEAPMKTGIRQG 943 (1178)
Q Consensus 866 ~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~--~~~~~~~~~~~~~~~~~~~~~ 943 (1178)
++++++++|+.+++..+..++.++..++.++..++.++.+.|.+.|+++||+|+.++ .+.++|.+..++..+...+..
T Consensus 155 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (555)
T TIGR01194 155 FAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEI 234 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999999999988888877777777788888888999999999999999999999954 567888888888888777666
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCC
Q 001041 944 MVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRE 1023 (1178)
Q Consensus 944 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~ 1023 (1178)
.......++..++..+...+.++++++. |.+|+|.++++..++..+..|+..+.+....++++..+.+|+.++++.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~ 311 (555)
T TIGR01194 235 LIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERF 311 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5555444444444444444445555443 7899999999999999999999999999999999999999999997642
Q ss_pred CCCCCC---CCCCC----cccCccccEEEeeeEEeCCCCC--CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcc
Q 001041 1024 SKIDPS---DESGT----ILEDVKGEIELHHVSFKYPSRP--DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRF 1094 (1178)
Q Consensus 1024 ~~~~~~---~~~~~----~~~~~~g~I~f~nVsf~Y~~~~--~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~ 1094 (1178)
.+.++. ++... .+....++|+|+||+|+|++.+ ++++|+|+||+|++||++|||||||||||||+++|+|+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~ 391 (555)
T TIGR01194 312 NEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGL 391 (555)
T ss_pred ccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 211110 00000 1112246899999999997431 23699999999999999999999999999999999999
Q ss_pred cCCCCCeEEECCcccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhccccccc
Q 001041 1095 YDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTS 1174 (1178)
Q Consensus 1095 y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT 1174 (1178)
|+|++|+|++||+|+++++.+++|+++++|+|||+||++|+++|+ . +++++++++++++.++++++++++|+||||
T Consensus 392 ~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~--~--~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t 467 (555)
T TIGR01194 392 YIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE--G--EHASLDNAQQYLQRLEIADKVKIEDGGFST 467 (555)
T ss_pred CCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc--c--cchhHHHHHHHHHHcCCchhhcccccccCC
Confidence 999999999999999999999999999999999999999999996 2 368999999999999999999999999998
Q ss_pred cc
Q 001041 1175 RL 1176 (1178)
Q Consensus 1175 ~v 1176 (1178)
..
T Consensus 468 ~~ 469 (555)
T TIGR01194 468 TT 469 (555)
T ss_pred cc
Confidence 63
No 72
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=6e-53 Score=517.09 Aligned_cols=446 Identities=16% Similarity=0.193 Sum_probs=379.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 716 PEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQR 795 (1178)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (1178)
++++.++..+++.++..++....++++..++|....... ......+.++++++.++..++.+++.++.+..+.++..+
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (544)
T TIGR01842 3 KNKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGS--VPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGA 80 (544)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666677777777777888889999987653211 112233444555566677788889999999999999999
Q ss_pred HHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001041 796 IRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGD-ALARIVQNISTAAAGLIIAFTASWQLALIILVMLP 874 (1178)
Q Consensus 796 lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~-~l~~~~~~~~~~i~~ii~~~~~~~~l~l~~l~~~p 874 (1178)
+|.++|+|++++|+.. .|...+++++|++.+++.+.. .+..++..++.++ .++++++++|++++++++.+|
T Consensus 81 lr~~~~~~ll~~~~~~-------~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~ 152 (544)
T TIGR01842 81 LNQPIFAASFSATLRR-------GKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHPWIGILALGGAV 152 (544)
T ss_pred HHHHHHHHHhcCcccC-------ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHH
Confidence 9999999999999843 256789999999999998887 4555555555444 446788999999999998888
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHHHhhHHHHHH
Q 001041 875 LIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASF 954 (1178)
Q Consensus 875 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 954 (1178)
+++++.++..++.++..++.++..++..+.+.|+++|+++||+|+.|+.+.++|++..++..+...+.....+....+..
T Consensus 153 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (544)
T TIGR01842 153 VLVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSK 232 (544)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887777778888888888888999999999999999999999999999999999999999888888887777777777
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCCCCCCCCCC
Q 001041 955 FLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGT 1034 (1178)
Q Consensus 955 ~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~ 1034 (1178)
.+..+..++++++|++++.+|.+|+|+++++..+...+..|+..+......++.+..+.+|+.++++.+++.++. .
T Consensus 233 ~~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~----~ 308 (544)
T TIGR01842 233 YFRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA----M 308 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC----C
Confidence 777777788889999999999999999999999999999999999999999999999999999999866543211 1
Q ss_pred cccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCCh
Q 001041 1035 ILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL 1114 (1178)
Q Consensus 1035 ~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l 1114 (1178)
..++..+.|+|+||+|+|+++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.
T Consensus 309 ~~~~~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~ 387 (544)
T TIGR01842 309 PLPEPEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDR 387 (544)
T ss_pred CCCCCCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCH
Confidence 112234679999999999743 3479999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1115 KWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1115 ~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
+++|+++++|||||++|++||||||++++ ++++++++++|++.+++++++++||+|+||.++
T Consensus 388 ~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~ 449 (544)
T TIGR01842 388 ETFGKHIGYLPQDVELFPGTVAENIARFG-ENADPEKIIEAAKLAGVHELILRLPDGYDTVIG 449 (544)
T ss_pred HHHhhheEEecCCcccccccHHHHHhccC-CCCCHHHHHHHHHHhChHHHHHhCccccccccC
Confidence 99999999999999999999999999874 468999999999999999999999999999874
No 73
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-53 Score=460.51 Aligned_cols=391 Identities=26% Similarity=0.344 Sum_probs=348.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 001041 782 SYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIA-FT 860 (1178)
Q Consensus 782 ~~~~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~-~~ 860 (1178)
..++..+++.+.+.+--+.|.|++++++.|+- ++.+|.+...+..-...|+..+...+..++..++-+....+++ ..
T Consensus 3 ~~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl--~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~ 80 (497)
T COG5265 3 DRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHL--ERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRV 80 (497)
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHhcchhhhh--hcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 34566778888888999999999999999999 5789999999999999999999999999888888777666655 45
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhh
Q 001041 861 ASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGI 940 (1178)
Q Consensus 861 ~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~ 940 (1178)
++|+.+++.++++.+++++.....-......+++.++.+++++...+++-+-+|+|.||.|+++..+|.+.++.+.++..
T Consensus 81 ~~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~ 160 (497)
T COG5265 81 YGWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAI 160 (497)
T ss_pred cccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHH
Confidence 79999999999999998888777777777888999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHh
Q 001041 941 RQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAII 1020 (1178)
Q Consensus 941 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l 1020 (1178)
+.....+........+...........+...+..|.+|+|+++....++.....|+..++....++.++...++++++++
T Consensus 161 k~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl 240 (497)
T COG5265 161 KVHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLL 240 (497)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhh
Confidence 87766665555555556666666777888889999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCC
Q 001041 1021 DRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100 (1178)
Q Consensus 1021 ~~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G 1100 (1178)
+.+.+....+..++..+...|.|.|+||+|.|. |..|+|+|+||++++|+++||||+||+|||||.++|+||||+++|
T Consensus 241 ~~~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~--~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG 318 (497)
T COG5265 241 DVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYD--PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSG 318 (497)
T ss_pred ccchhhccCCCCccccccccceEEEEEEEeecc--ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCc
Confidence 988776543332222224568999999999996 456899999999999999999999999999999999999999999
Q ss_pred eEEECCcccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1101 HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1101 ~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
+|.|||+||+++..++||+.||+||||.+||++||..||+||++ ++|+||+++|+|.|++|+||++||+||||.|+
T Consensus 319 ~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~-~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vg 394 (497)
T COG5265 319 SITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRP-DATAEEVGAAAEAAQIHDFIQSLPEGYDTGVG 394 (497)
T ss_pred eEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCc-cccHHHHHHHHHHhhhhHHHHhCchhhhcccc
Confidence 99999999999999999999999999999999999999999964 89999999999999999999999999999997
No 74
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=7.4e-51 Score=467.26 Aligned_cols=228 Identities=28% Similarity=0.474 Sum_probs=181.9
Q ss_pred cEEEEeEEEECCCCCC-CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC----CCcEEECCeecCCCCHHH
Q 001041 383 DIELRDVYFSYPARPN-EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ----AGEVLIDGINLKEFQLQW 457 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~-~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~----~G~i~i~g~~~~~~~~~~ 457 (1178)
-++++|++..|..... ..+++|+||++.+||.+||||+|||||||++++|+|++++. +|+|.++|.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 5899999999975532 25999999999999999999999999999999999999887 799999999999988765
Q ss_pred H---h-cceEEEcCCCC-CCc--ccHHHHH----hcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChH
Q 001041 458 I---R-KKIGLVSQEPV-LFT--GSIKDNI----AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1178)
Q Consensus 458 ~---r-~~i~~v~Q~~~-l~~--~ti~~ni----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgG 526 (1178)
. | ++|+||+|+|+ .+| -||.+-| ....+...++...++.+ +.+.+ .+|+.... ....+.||||
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~e---lL~~V-gl~~~~~~--~~yPheLSGG 158 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVE---LLEQV-GLPDPERR--DRYPHQLSGG 158 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHH---HHHHc-CCCChhhh--ccCCcccCch
Confidence 5 3 57999999995 343 3444443 32221112222222222 22222 33433222 5578999999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecC
Q 001041 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603 (1178)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 603 (1178)
||||+.||+||..+|++||+||||.+||+.++++|.+.|+++. .+.++|+|||++..+.. ||||+||++|+++|.|+
T Consensus 159 ~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~ 238 (539)
T COG1123 159 MRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGP 238 (539)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecC
Confidence 9999999999999999999999999999999999999999876 47899999999999876 99999999999999999
Q ss_pred hhHHhcCCCchHH
Q 001041 604 HSKLVEDPEGAYS 616 (1178)
Q Consensus 604 ~~~l~~~~~~~~~ 616 (1178)
.+++++++...|.
T Consensus 239 ~~~i~~~p~hpYT 251 (539)
T COG1123 239 TEEILSNPQHPYT 251 (539)
T ss_pred HHHHHhccCCccc
Confidence 9999887554444
No 75
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.6e-51 Score=492.74 Aligned_cols=212 Identities=25% Similarity=0.435 Sum_probs=176.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC--CCCcEEECCeecCCCCHHH-Hh
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP--QAGEVLIDGINLKEFQLQW-IR 459 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~--~~G~i~i~g~~~~~~~~~~-~r 459 (1178)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+... .|
T Consensus 5 ~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 4899999999963 4699999999999999999999999999999999999986 7999999999998776554 46
Q ss_pred cceEEEcCCCCCCc-ccHHHHHhcCCCC-----CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHH
Q 001041 460 KKIGLVSQEPVLFT-GSIKDNIAYGKDD-----ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1178)
Q Consensus 460 ~~i~~v~Q~~~l~~-~ti~~ni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~l 533 (1178)
++++||+|+|.++. .|++||+.++... .+.++... .+.+.++.+ |++........+||||||||++|
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~l 154 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYL-----RAQKLLAQL--KLDINPATPVGNLGLGQQQLVEI 154 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHH-----HHHHHHHHc--CCCCCcccchhhCCHHHHHHHHH
Confidence 78999999998875 6999999986431 12222111 122334444 45444566677899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecCh
Q 001041 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTH 604 (1178)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~ 604 (1178)
|||++.+|++|||||||++||+.+...+.+.|.++. +++|+|+|||+++.+.. ||+|++|++|++++.|++
T Consensus 155 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~ 227 (506)
T PRK13549 155 AKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPA 227 (506)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeeccc
Confidence 999999999999999999999999999999998864 46899999999999865 999999999999876653
No 76
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-50 Score=488.83 Aligned_cols=214 Identities=24% Similarity=0.424 Sum_probs=177.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHH-hcc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI-RKK 461 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~-r~~ 461 (1178)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+.... +.+
T Consensus 5 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 4899999999963 469999999999999999999999999999999999999999999999999988776543 467
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCCCC---------CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHH
Q 001041 462 IGLVSQEPVLFT-GSIKDNIAYGKDDA---------TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1178)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~ni~~~~~~~---------~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri 531 (1178)
++||+|++.++. .|++||+.++.... +.++... .+.+.++.+ |+.........+||||||||+
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrv 154 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRV-----RAAMMLLRV--GLKVDLDEKVANLSISHKQML 154 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHH-----HHHHHHHHc--CCCCCcccchhhCCHHHHHHH
Confidence 999999998775 59999998753210 1111111 122333333 454445566678999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhH
Q 001041 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606 (1178)
Q Consensus 532 ~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 606 (1178)
+||||++.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 155 ~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (510)
T PRK09700 155 EIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSD 231 (510)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhh
Confidence 99999999999999999999999999999999998864 46899999999999865 99999999999987776544
No 77
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-50 Score=497.20 Aligned_cols=221 Identities=28% Similarity=0.436 Sum_probs=177.4
Q ss_pred cEEEEeEEEECCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecC----------
Q 001041 383 DIELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK---------- 451 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~---------- 451 (1178)
.|+++|++++|+... ..++|+|+||++++||+++|+|+||||||||+++|+|+++|.+|+|.++|+++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 599999999996422 246999999999999999999999999999999999999999999999997552
Q ss_pred CCCHH---HHh-cceEEEcCCC--CCCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCc---cchhcC
Q 001041 452 EFQLQ---WIR-KKIGLVSQEP--VLFT-GSIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGI---DTLVGE 518 (1178)
Q Consensus 452 ~~~~~---~~r-~~i~~v~Q~~--~l~~-~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~g~---~t~~~~ 518 (1178)
+.+.. .+| ++|+||+|+| .++. .||+||+.++.. ..+.++..+ .+.+.++.+ |+ +.....
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~ 164 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMV-----EAKRMLDQV--RIPEAQTILSR 164 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHC--CCCChhhHHhC
Confidence 22222 333 4799999998 4664 699999987521 112222111 112233333 44 234566
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeC
Q 001041 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHR 595 (1178)
Q Consensus 519 ~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~ 595 (1178)
...+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.++++.+ ++|+|+|||+++.+.. ||+|++|++
T Consensus 165 ~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~ 244 (623)
T PRK10261 165 YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQ 244 (623)
T ss_pred CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeC
Confidence 7789999999999999999999999999999999999999999999988753 7899999999999865 999999999
Q ss_pred CEEEEecChhHHhcC
Q 001041 596 GKIVEKGTHSKLVED 610 (1178)
Q Consensus 596 G~i~~~g~~~~l~~~ 610 (1178)
|++++.|+++++...
T Consensus 245 G~i~~~g~~~~~~~~ 259 (623)
T PRK10261 245 GEAVETGSVEQIFHA 259 (623)
T ss_pred CeecccCCHHHhhcC
Confidence 999999998887543
No 78
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.4e-49 Score=485.24 Aligned_cols=218 Identities=30% Similarity=0.472 Sum_probs=174.1
Q ss_pred cEEEEeEEEECCCC-CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCcEEECCeecCCCCHH
Q 001041 383 DIELRDVYFSYPAR-PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKEFQLQ 456 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~-~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~~~~~ 456 (1178)
.++++|++++|+.. ...++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999632 124699999999999999999999999999999999999986 699999999999877654
Q ss_pred H---Hh-cceEEEcCCCC--CC-cccHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCccc---hhcCCCCCC
Q 001041 457 W---IR-KKIGLVSQEPV--LF-TGSIKDNIAYGK---DDATTEEIRVATELANAAKFIDKLPQGIDT---LVGEHGTQL 523 (1178)
Q Consensus 457 ~---~r-~~i~~v~Q~~~--l~-~~ti~~ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t---~~~~~g~~l 523 (1178)
. .| ++++|++|+|. ++ ..|+++|+.++. ...+.++... .+.+.++.+ |++. .......+|
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~~~~L 157 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARG-----EILNCLDRV--GIRQAAKRLTDYPHQL 157 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHC--CCCChHHHHhhCCccc
Confidence 3 33 57999999985 44 368999986421 1112221111 112223333 3321 245567789
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhhc-cCEEEEEeCCEEEE
Q 001041 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVE 600 (1178)
Q Consensus 524 SgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~ 600 (1178)
|||||||++|||||+.+|++|||||||++||+.+.+.+.+.++++. .++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 158 SgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~ 237 (529)
T PRK15134 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVE 237 (529)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998864 36899999999998865 99999999999998
Q ss_pred ecChhHH
Q 001041 601 KGTHSKL 607 (1178)
Q Consensus 601 ~g~~~~l 607 (1178)
.|+++++
T Consensus 238 ~g~~~~~ 244 (529)
T PRK15134 238 QNRAATL 244 (529)
T ss_pred eCCHHHH
Confidence 8877654
No 79
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=4.8e-47 Score=496.83 Aligned_cols=220 Identities=23% Similarity=0.447 Sum_probs=187.2
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcc
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1178)
..|+++|+++.|++. ++++++|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++.. +....|++
T Consensus 927 ~~L~I~nLsK~y~~~-~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~ 1004 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPS-GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQS 1004 (2272)
T ss_pred ceEEEEeEEEEecCC-CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhc
Confidence 369999999999532 3569999999999999999999999999999999999999999999999999865 45667889
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhc
Q 001041 462 IGLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1178)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~ 538 (1178)
++||||++.+|. .|++|||.|+.. ..+.++.++ .+.+.++.+ |++........+||||||||++||||++
T Consensus 1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~-----~v~~lL~~v--gL~~~~~~~~~~LSGGqKQRLsLArALi 1077 (2272)
T TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQL-----EMEAMLEDT--GLHHKRNEEAQDLSGGMQRKLSVAIAFV 1077 (2272)
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence 999999998885 699999987421 112222211 122334443 5666667778899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
.+|+++|||||||+||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||||++|++|++++.|++++|.++
T Consensus 1078 ~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1078 GDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 999999999999999999999999999988778999999999999865 999999999999999999998653
No 80
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2.7e-49 Score=479.41 Aligned_cols=212 Identities=24% Similarity=0.404 Sum_probs=174.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHH-Hhcc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW-IRKK 461 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~-~r~~ 461 (1178)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .+++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 46999999999999999999999999999999999999999999999999987665444 3568
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCCC------CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHH
Q 001041 462 IGLVSQEPVLFT-GSIKDNIAYGKDD------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1178)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lA 534 (1178)
++|++|++.++. .|++||+.++... .+.++.++ .+.+.++.+ |+.........+||||||||++||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 153 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYA-----EADKLLARL--NLRFSSDKLVGELSIGEQQMVEIA 153 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHH
Confidence 999999998775 6999999986421 11221111 122334443 444444556678999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecCh
Q 001041 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTH 604 (1178)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~ 604 (1178)
|||+.+|++|||||||++||+.+...+.+.++++. +++|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~ 225 (501)
T PRK10762 154 KVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREV 225 (501)
T ss_pred HHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCc
Confidence 99999999999999999999999999999988764 46899999999999865 999999999999876543
No 81
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=3.9e-49 Score=478.92 Aligned_cols=209 Identities=25% Similarity=0.445 Sum_probs=170.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC--CCCcEEECCeecCCCCHHH-Hhc
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP--QAGEVLIDGINLKEFQLQW-IRK 460 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~--~~G~i~i~g~~~~~~~~~~-~r~ 460 (1178)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|.|+++| ++|+|.++|.++...+... .|+
T Consensus 2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 689999999963 4699999999999999999999999999999999999987 7999999999998776544 456
Q ss_pred ceEEEcCCCCCCc-ccHHHHHhcCCCC------CCHHHHHHHHHHhcHHHHHHhCCCCccchh-cCCCCCCChHHHHHHH
Q 001041 461 KIGLVSQEPVLFT-GSIKDNIAYGKDD------ATTEEIRVATELANAAKFIDKLPQGIDTLV-GEHGTQLSGGQKQRIA 532 (1178)
Q Consensus 461 ~i~~v~Q~~~l~~-~ti~~ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~-~~~g~~lSgGqkqri~ 532 (1178)
+++||+|+|.++. .|++||+.++... ...++... .+.+.++.+ |++... .....+||||||||++
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ 151 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYL-----RAKNLLREL--QLDADNVTRPVGDYGGGQQQLVE 151 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHH-----HHHHHHHHc--CCCCCcccCchhhCCHHHHHHHH
Confidence 7999999998775 6999999876421 11121111 122334443 333222 2345689999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEec
Q 001041 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 533 lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1178)
||||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 152 iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~ 223 (500)
T TIGR02633 152 IAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATK 223 (500)
T ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeec
Confidence 9999999999999999999999999999999998764 46899999999999865 9999999999987644
No 82
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=3.1e-49 Score=481.58 Aligned_cols=211 Identities=26% Similarity=0.498 Sum_probs=167.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC--CCCCCcEEEC---------------
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY--DPQAGEVLID--------------- 446 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~--~~~~G~i~i~--------------- 446 (1178)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 468999999963 46999999999999999999999999999999999996 7999999997
Q ss_pred --------CeecC-------CCC---HHHHhcceEEEcCC-CCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHH
Q 001041 447 --------GINLK-------EFQ---LQWIRKKIGLVSQE-PVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKF 504 (1178)
Q Consensus 447 --------g~~~~-------~~~---~~~~r~~i~~v~Q~-~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~ 504 (1178)
|.++. ..+ ...+|+.++|++|+ +.+|. .|++||+.++... ...++.+. .+.+.
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~ 152 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVG-----RAVDL 152 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHH
Confidence 32221 111 13457789999998 56665 6999999874321 12222111 12233
Q ss_pred HHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcc
Q 001041 505 IDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLS 582 (1178)
Q Consensus 505 i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~ 582 (1178)
++.+ |++........+||||||||++||||++.+|++|||||||++||+++.+.+.+.++++.+ ++|+|+|||+++
T Consensus 153 l~~~--gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~ 230 (520)
T TIGR03269 153 IEMV--QLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE 230 (520)
T ss_pred HHHc--CChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH
Confidence 3333 555555666789999999999999999999999999999999999999999999988743 689999999999
Q ss_pred hhhc-cCEEEEEeCCEEEEecCh
Q 001041 583 TVRN-ADMIAVIHRGKIVEKGTH 604 (1178)
Q Consensus 583 ~~~~-~d~i~~l~~G~i~~~g~~ 604 (1178)
.+.. ||+|++|++|++++.|++
T Consensus 231 ~~~~~~d~i~~l~~G~i~~~g~~ 253 (520)
T TIGR03269 231 VIEDLSDKAIWLENGEIKEEGTP 253 (520)
T ss_pred HHHHhcCEEEEEeCCEEeeecCH
Confidence 9865 999999999998765543
No 83
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.9e-48 Score=471.57 Aligned_cols=210 Identities=19% Similarity=0.296 Sum_probs=175.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+...+++.+
T Consensus 3 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i 79 (490)
T PRK10938 3 SLQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLV 79 (490)
T ss_pred eEEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHh
Confidence 3889999999963 3599999999999999999999999999999999999999999999999888777766777789
Q ss_pred EEEcCCCCC--C-------cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHH
Q 001041 463 GLVSQEPVL--F-------TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1178)
Q Consensus 463 ~~v~Q~~~l--~-------~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~l 533 (1178)
+|++|++.+ + ..|+++|+.++. ...+++.++++.. |++.........||||||||++|
T Consensus 80 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgG~~qrv~l 146 (490)
T PRK10938 80 SDEWQRNNTDMLSPGEDDTGRTTAEIIQDEV--KDPARCEQLAQQF-----------GITALLDRRFKYLSTGETRKTLL 146 (490)
T ss_pred ceeccCcchhhcccchhhccccHHHhcccch--hHHHHHHHHHHHc-----------CCHhhhhCCcccCCHHHHHHHHH
Confidence 999998742 2 458999987531 1123333333333 44444455667899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc-CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHh
Q 001041 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608 (1178)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 608 (1178)
|||++.+|++|||||||++||+.+.+.+.+.++++.+ ++|+|+|||+++.+.. ||+|++|++|+++..|+++++.
T Consensus 147 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 223 (490)
T PRK10938 147 CQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEIL 223 (490)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999988643 6899999999998865 9999999999999888766543
No 84
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=1.1e-46 Score=417.16 Aligned_cols=434 Identities=19% Similarity=0.202 Sum_probs=370.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Q 001041 729 MANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHME 808 (1178)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p 808 (1178)
.+..++....+..+-++.|.+..+..- .......++.+.+.++..++.+++...+.+++.++...|+.++|....++|
T Consensus 33 ~~INiL~L~~~lyMLQVyDRVL~S~s~--~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~ 110 (580)
T COG4618 33 AVINLLALTGPLYMLQVYDRVLPSRSV--PTLVMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAP 110 (580)
T ss_pred HHHHHHHHhhhHHHHHHHhhhccCCCc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhH
Confidence 333444455566666777877654221 112222333444556677888899999999999999999999999998887
Q ss_pred cccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001041 809 VSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMK 888 (1178)
Q Consensus 809 ~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~ 888 (1178)
..--. .|+=..- -+|.++++.+++..-+..+.+.-..-+.+.++|.++++++++.++...+++.+.++-.+..+
T Consensus 111 l~~~~-----~g~~~Q~-LrDL~qvR~Fltg~g~~A~fDaPW~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~ 184 (580)
T COG4618 111 LLRRG-----SGDGLQP-LRDLDQVRQFLTGTGLTAFFDAPWMPLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATR 184 (580)
T ss_pred HhhcC-----CCccccc-hhhHHHHHHHHcCCCcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 76533 2322222 24999999999886666666666666677788899999999999999999999998888888
Q ss_pred hhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 001041 889 GFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAG 968 (1178)
Q Consensus 889 ~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 968 (1178)
+..++..+.....+....-+..|.++|++.|......++|.+....+.....+..-..+.+.+++..+-++....++.+|
T Consensus 185 ~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~G 264 (580)
T COG4618 185 KPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLG 264 (580)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88888888888899999999999999999999999999999999999999888888888999999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccCccccEEEeee
Q 001041 969 ARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHV 1048 (1178)
Q Consensus 969 ~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~nV 1048 (1178)
+|++..|++|.|.+++....+.....|+-.+...+..+..+..+..|+.+++...|...+ .-+.|..+|.+..++|
T Consensus 265 A~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~----~m~LP~P~g~L~Ve~l 340 (580)
T COG4618 265 AWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAE----RMPLPAPQGALSVERL 340 (580)
T ss_pred eeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC----CCCCCCCCceeeEeee
Confidence 999999999999999999999999999999999999999999999999999987665432 2233445799999999
Q ss_pred EEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcccccccc
Q 001041 1049 SFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEP 1128 (1178)
Q Consensus 1049 sf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp 1128 (1178)
++.=|+. ++|+|+||||+++|||-+|||||||||||||+++|.+.|.|.+|+|++||-|+++++.+.|=++|||.|||.
T Consensus 341 ~~~PPg~-~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdV 419 (580)
T COG4618 341 TAAPPGQ-KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDV 419 (580)
T ss_pred eecCCCC-CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccc
Confidence 9976644 568999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHh-cCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1129 VLFNDTIRANIA-YGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1129 ~LF~gTIreNI~-~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
.||+|||+|||+ |+ +++++|.|.+|++.|++||.|.+||+||||.|+
T Consensus 420 eLF~GTIaeNIaRf~--~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG 467 (580)
T COG4618 420 ELFDGTIAENIARFG--EEADPEKVIEAARLAGVHELILRLPQGYDTRIG 467 (580)
T ss_pred eecCCcHHHHHHhcc--ccCCHHHHHHHHHHcChHHHHHhCcCCccCccC
Confidence 999999999996 54 378999999999999999999999999999986
No 85
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-48 Score=472.35 Aligned_cols=209 Identities=25% Similarity=0.428 Sum_probs=173.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCH-HHHhcc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRKK 461 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~-~~~r~~ 461 (1178)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|++
T Consensus 4 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 369999999999999999999999999999999999999999999999999875543 356788
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCCC-----CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHH
Q 001041 462 IGLVSQEPVLFT-GSIKDNIAYGKDD-----ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1178)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~ni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lAR 535 (1178)
|+|++|+|.++. .|++||+.++... .+..+..+ .+.+.++.+ |++........+||||||||++|||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lar 153 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNY-----EAREQLEHL--GVDIDPDTPLKYLSIGQRQMVEIAK 153 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHH-----HHHHHHHHc--CCCCCcCCchhhCCHHHHHHHHHHH
Confidence 999999998886 5999999986321 11221111 122334444 4444445566789999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEe
Q 001041 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEK 601 (1178)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~ 601 (1178)
|++.+|++|||||||++||+.+.+.+.+.++++. +++|+|+|||+++.+.. ||+|++|++|++++.
T Consensus 154 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~ 221 (501)
T PRK11288 154 ALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVAT 221 (501)
T ss_pred HHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 9999999999999999999999999999998764 46899999999998865 999999999998753
No 86
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=4.6e-48 Score=468.78 Aligned_cols=213 Identities=27% Similarity=0.458 Sum_probs=178.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHh-cc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIR-KK 461 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r-~~ 461 (1178)
.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+....+ ..
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 4999999999963 4699999999999999999999999999999999999999999999999999877766554 56
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccC
Q 001041 462 IGLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1178)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~ 540 (1178)
++|++|++.++. .|++||+.++.... .+.++ .+.+.++.+ |++........+||||||||++|||||+.+
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~aL~~~ 158 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKR--QASMQ-----KMKQLLAAL--GCQLDLDSSAGSLEVADRQIVEILRGLMRD 158 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccc--hHHHH-----HHHHHHHHc--CCCccccCChhhCCHHHHHHHHHHHHHHcC
Confidence 999999998775 59999999864321 11111 112233333 444445566678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHH
Q 001041 541 PRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1178)
|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 159 SRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHc
Confidence 99999999999999999999999998864 46899999999998865 999999999999988887664
No 87
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.1e-48 Score=431.96 Aligned_cols=236 Identities=28% Similarity=0.507 Sum_probs=219.9
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcc
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1178)
|.|+++|++++|+.. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++ .+|+|.+||+++..++...+|++
T Consensus 1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 468999999999743 3569999999999999999999999999999999999997 78999999999999999999999
Q ss_pred eEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCC
Q 001041 462 IGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1178)
Q Consensus 462 i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~ 541 (1178)
|+||||+|++|++|+++|+.+.. ..++++++++++.+++.+.+..+|+|+++.++++|.+||||||||++||||++++|
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~~-~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p 157 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPYG-KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKA 157 (275)
T ss_pred EEEECCCcccchhhHHHHhhhcc-CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999997432 35678899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHH
Q 001041 542 RILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRL 621 (1178)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 621 (1178)
+|+||||||++||+++.+.+++.|++..+++|+|+|||+++.+..||+|++|++|++++.|+|++|+++ .+.|++++..
T Consensus 158 ~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~ 236 (275)
T cd03289 158 KILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE-KSHFKQAISP 236 (275)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhC-cHHHHHHHhh
Confidence 999999999999999999999999988778999999999999989999999999999999999999986 5777777753
No 88
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=4.4e-47 Score=501.37 Aligned_cols=206 Identities=23% Similarity=0.291 Sum_probs=165.6
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC----CCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCc-
Q 001041 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY----DPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT- 473 (1178)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~----~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~- 473 (1178)
+++|+|+|+.+++||+++|+||||||||||+++|.|.. .|.+|+|.++|.++.+.. ...|+.++||+|++.++.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence 46999999999999999999999999999999999986 468999999999876543 345678999999987774
Q ss_pred ccHHHHHhcCC----C-----CCCHHHHHH-HHHHhcHHHHHHhCCCCccchhcC-CCCCCChHHHHHHHHHHHhccCCC
Q 001041 474 GSIKDNIAYGK----D-----DATTEEIRV-ATELANAAKFIDKLPQGIDTLVGE-HGTQLSGGQKQRIAIARAILKDPR 542 (1178)
Q Consensus 474 ~ti~~ni~~~~----~-----~~~~~~~~~-~~~~~~~~~~i~~~~~g~~t~~~~-~g~~lSgGqkqri~lARal~~~~~ 542 (1178)
.||+||+.|+. | ..+.++..+ ..+. +.+.+ .+.+-.+|.+|+ ....||||||||++||||++.+|+
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~l-gL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~ 229 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADV--YMATY-GLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAK 229 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH--HHHHc-CcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCC
Confidence 69999998852 1 122222211 1110 11111 233345677765 456799999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcc-hh-hccCEEEEEeCCEEEEecChhHHh
Q 001041 543 ILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLS-TV-RNADMIAVIHRGKIVEKGTHSKLV 608 (1178)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~ 608 (1178)
|++|||||++||+.+...+.+.|+++.+ ++|+|+++|++. .+ ..+|+|++|++|++++.|+++++.
T Consensus 230 vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~ 299 (1394)
T TIGR00956 230 IQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAK 299 (1394)
T ss_pred EEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHH
Confidence 9999999999999999999999998753 789999999974 44 559999999999999999998873
No 89
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-48 Score=470.79 Aligned_cols=209 Identities=22% Similarity=0.372 Sum_probs=173.3
Q ss_pred EEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCH-HHHhcceEE
Q 001041 386 LRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRKKIGL 464 (1178)
Q Consensus 386 ~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~-~~~r~~i~~ 464 (1178)
++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|++++|
T Consensus 1 ~~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 3689999963 469999999999999999999999999999999999999999999999999876654 345678999
Q ss_pred EcCCCCCC-cccHHHHHhcCCCC-----CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhc
Q 001041 465 VSQEPVLF-TGSIKDNIAYGKDD-----ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1178)
Q Consensus 465 v~Q~~~l~-~~ti~~ni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~ 538 (1178)
++|++.++ ..|++||+.++... .+.++.++ .+.+.++.+ |++........+||||||||++||||++
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~ 150 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYR-----DTKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFS 150 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHH
Confidence 99999776 56999999976321 12222111 123344444 5555556677889999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecCh
Q 001041 539 KDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTH 604 (1178)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~ 604 (1178)
.+|++|||||||++||+.+.+.+.+.++++. +++|+|+|||+++.+.. ||+|++|++|++++.|++
T Consensus 151 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~ 218 (491)
T PRK10982 151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPL 218 (491)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecCh
Confidence 9999999999999999999999999998864 46899999999998865 999999999999876654
No 90
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=3.5e-46 Score=457.16 Aligned_cols=433 Identities=17% Similarity=0.155 Sum_probs=331.4
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 713 LNKPEIPVILAGTIAAMANGVILPI-YGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNK 791 (1178)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1178)
+.+++++.++.++++.++..++... ++++...+++..... .. . ...++++.++..++.+++.++....+.+
T Consensus 7 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~~----~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (547)
T PRK10522 7 VWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADTS----LL--V--LPEFLGLLLLLMAVTLGSQLALTTLGHH 78 (547)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc----ch--H--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666655544 355666666643210 00 0 1111222233345667888889999999
Q ss_pred HHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001041 792 LIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILV 871 (1178)
Q Consensus 792 ~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l~l~~l~ 871 (1178)
+..++|.+++++++++|++||+ ++++|++++|+++|++.+...+. .++.++.+++.+++.++++++++|++++++++
T Consensus 79 ~~~~lR~~l~~~ll~~~~~~~~--~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~ 155 (547)
T PRK10522 79 FVYRLRSEFIKRILDTHVERIE--QLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAAYLAWLSPKMLLVTAI 155 (547)
T ss_pred HHHHHHHHHHHHHHhCCHHHHh--ccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 9999999999999999999999 58999999999999999998776 47788888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccch---HHHHHHHHHHhhhHHHhhhHHHHHHhh
Q 001041 872 MLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAE---EKVMQLYKKKCEAPMKTGIRQGMVSGG 948 (1178)
Q Consensus 872 ~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 948 (1178)
++|+.+++.++..++.++..++.++..++.++.+.|.++|+++++ ++.+ +.+.++|++..++..+...+.......
T Consensus 156 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (547)
T PRK10522 156 WMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIRADTFHLS 234 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHH
Confidence 999998888888888888888888999999999999999999995 5544 456788888888887776665554443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCCCC
Q 001041 949 GFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDP 1028 (1178)
Q Consensus 949 ~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~ 1028 (1178)
...+...+......+.++++..+ +..+.+.+..+..+......|+..+......++.+..+.+|+.++++.+++.+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~ 311 (547)
T PRK10522 235 AVNWSNIMMLGAIGLVFYMANSL---GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEF 311 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 33333222222222233333322 112333344444444456689999999999999999999999998765432211
Q ss_pred CCCCCCcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcc
Q 001041 1029 SDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVE 1108 (1178)
Q Consensus 1029 ~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~d 1108 (1178)
.+ .. ..+..+.|+|+||+|+|++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|
T Consensus 312 ~~--~~-~~~~~~~i~~~~v~f~y~~--~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~ 386 (547)
T PRK10522 312 PR--PQ-AFPDWQTLELRNVTFAYQD--NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKP 386 (547)
T ss_pred cc--cc-ccCcCceEEEEEEEEEeCC--CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEE
Confidence 11 11 1111357999999999974 2469999999999999999999999999999999999999999999999999
Q ss_pred cCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccc
Q 001041 1109 IQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQV 1171 (1178)
Q Consensus 1109 I~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~g 1171 (1178)
+++++.+++|++|++|||||+||+||+++| + + ++++++++++++.+++++++.. |+|
T Consensus 387 ~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~-~~~~~~~~~~~~~~~l~~~~~~-~~~ 443 (547)
T PRK10522 387 VTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G-K-PANPALVEKWLERLKMAHKLEL-EDG 443 (547)
T ss_pred CCCCCHHHHhhheEEEecChhHHHHhhccc---c-C-chHHHHHHHHHHHcCCchhhhc-ccc
Confidence 999999999999999999999999999999 4 2 6889999999999999988763 554
No 91
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9e-49 Score=391.20 Aligned_cols=217 Identities=31% Similarity=0.548 Sum_probs=187.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecC-CCCHHHHhcc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK-EFQLQWIRKK 461 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~-~~~~~~~r~~ 461 (1178)
.|+++|++.+|+. ..+|+|||++|++||.++|+||||||||||+++|.|+-+|++|+|.+||.++. ..+...+|++
T Consensus 2 mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 4899999999963 46999999999999999999999999999999999999999999999998774 3378899999
Q ss_pred eEEEcCCCCCC-cccHHHHHhcCCC---CCCHHH----HHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHH
Q 001041 462 IGLVSQEPVLF-TGSIKDNIAYGKD---DATTEE----IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1178)
Q Consensus 462 i~~v~Q~~~l~-~~ti~~ni~~~~~---~~~~~~----~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~l 533 (1178)
+|+|+|+..|| .-|+-||+.++.- ..+.++ -.+.++++ |+.........+||||||||+||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~V-----------GL~~ka~~yP~qLSGGQqQRVAI 147 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKV-----------GLADKADAYPAQLSGGQQQRVAI 147 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHc-----------CchhhhhhCccccCcHHHHHHHH
Confidence 99999999999 5899999998631 112222 22233333 44445555668999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcCC
Q 001041 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDP 611 (1178)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 611 (1178)
||||..+|+++|+|||||||||+....+.+.++++. .|.|.|+|||.+.+.+. ||||+.||+|+|+|.|+|+++..++
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p 227 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP 227 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence 999999999999999999999999999999998876 46899999999999987 8999999999999999999999875
Q ss_pred Cc
Q 001041 612 EG 613 (1178)
Q Consensus 612 ~~ 613 (1178)
..
T Consensus 228 ~~ 229 (240)
T COG1126 228 KS 229 (240)
T ss_pred CC
Confidence 43
No 92
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-47 Score=464.73 Aligned_cols=208 Identities=24% Similarity=0.430 Sum_probs=167.2
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|. .+|+
T Consensus 2 l~i~~ls~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 67 (530)
T PRK15064 2 LSTANITMQFGA---KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLG 67 (530)
T ss_pred EEEEEEEEEeCC---cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEE
Confidence 789999999963 46999999999999999999999999999999999999999999999872 3699
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCCC----------------CHH---HHHHH----------HHHhcHHHHHHhCCCCcc
Q 001041 464 LVSQEPVLFT-GSIKDNIAYGKDDA----------------TTE---EIRVA----------TELANAAKFIDKLPQGID 513 (1178)
Q Consensus 464 ~v~Q~~~l~~-~ti~~ni~~~~~~~----------------~~~---~~~~~----------~~~~~~~~~i~~~~~g~~ 513 (1178)
|++|++.++. .|++||+.++.... ..+ .+.+. -....+.+.++.+ |++
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~ 145 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIP 145 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCC
Confidence 9999997774 69999998753100 000 00000 0011233344444 454
Q ss_pred chh-cCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEE
Q 001041 514 TLV-GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIA 591 (1178)
Q Consensus 514 t~~-~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~ 591 (1178)
... .....+||||||||++||||++.+|++|||||||++||+++...+.+.|.+ .+.|+|+|||+++.+.. ||+|+
T Consensus 146 ~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~i~ 223 (530)
T PRK15064 146 EEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTHMA 223 (530)
T ss_pred hhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEE
Confidence 322 345678999999999999999999999999999999999999999999875 47899999999999865 99999
Q ss_pred EEeCCEEE-EecChhHHhc
Q 001041 592 VIHRGKIV-EKGTHSKLVE 609 (1178)
Q Consensus 592 ~l~~G~i~-~~g~~~~l~~ 609 (1178)
+|++|+++ +.|+++++++
T Consensus 224 ~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 224 DLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred EEeCCEEEEecCCHHHHHH
Confidence 99999994 7888887654
No 93
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.8e-46 Score=457.47 Aligned_cols=209 Identities=29% Similarity=0.407 Sum_probs=167.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.|+++|++++|+. ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +.+|
T Consensus 6 ~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~i 72 (556)
T PRK11819 6 IYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIKV 72 (556)
T ss_pred EEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 5899999999962 24699999999999999999999999999999999999999999999975 2479
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCCC----------------CH----------HHHHHHHH-------HhcHHHHHHhC
Q 001041 463 GLVSQEPVLFT-GSIKDNIAYGKDDA----------------TT----------EEIRVATE-------LANAAKFIDKL 508 (1178)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~ni~~~~~~~----------------~~----------~~~~~~~~-------~~~~~~~i~~~ 508 (1178)
+||+|+|.++. .|++||+.++.... .. .++.+.++ ...+.+.++.+
T Consensus 73 ~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 152 (556)
T PRK11819 73 GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL 152 (556)
T ss_pred EEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC
Confidence 99999999885 59999998753100 00 00011111 01122233333
Q ss_pred CCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-c
Q 001041 509 PQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-A 587 (1178)
Q Consensus 509 ~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~ 587 (1178)
|++ .......+||||||||++||||++.+|++|||||||++||+.+...+.+.++++ +.|+|+|||+++.+.. |
T Consensus 153 --gl~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~--~~tviiisHd~~~~~~~~ 227 (556)
T PRK11819 153 --RCP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY--PGTVVAVTHDRYFLDNVA 227 (556)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhc
Confidence 332 235566789999999999999999999999999999999999999999999876 3699999999999875 9
Q ss_pred CEEEEEeCCEEE-EecChhHHhc
Q 001041 588 DMIAVIHRGKIV-EKGTHSKLVE 609 (1178)
Q Consensus 588 d~i~~l~~G~i~-~~g~~~~l~~ 609 (1178)
|+|++|++|+++ +.|+++++.+
T Consensus 228 d~i~~l~~g~i~~~~g~~~~~~~ 250 (556)
T PRK11819 228 GWILELDRGRGIPWEGNYSSWLE 250 (556)
T ss_pred CeEEEEeCCEEEEecCCHHHHHH
Confidence 999999999986 7788776643
No 94
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=2.4e-45 Score=455.02 Aligned_cols=453 Identities=11% Similarity=0.065 Sum_probs=371.9
Q ss_pred hHhhhhhcCChhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCch-hhhhhHHHHHHHHHHHHHHHHHHHH
Q 001041 707 TRRLAYLNKPEIP-----VILAGTIAAMANGVILPIYGLLISSVIETFFKPPHE-LKKDSRFWALIYLALGAGSFLLSPA 780 (1178)
Q Consensus 707 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1178)
+++++.+.+|++. .+++.+++.++...+....+++.+.+++........ .......++++++++.++..+..++
T Consensus 79 ~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~ 158 (659)
T TIGR00954 79 LDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYL 158 (659)
T ss_pred HHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666667665 566677777777888888899999999876533211 1111223444455566677778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 781 QSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFT 860 (1178)
Q Consensus 781 ~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~ 860 (1178)
..++......++..++|++.+++....++.||| +++|++++|+++|++.+.+.+...+..++..++.+++.+++++.
T Consensus 159 ~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d---~~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~ 235 (659)
T TIGR00954 159 LKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLD---SRIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLT 235 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCceEEeccCC---CCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999999999999999999999 36899999999999999999999999999999999988888876
Q ss_pred -HhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhh
Q 001041 861 -ASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTG 939 (1178)
Q Consensus 861 -~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~ 939 (1178)
++|.+++++++.+|+.+++..++.+++.+..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+..
T Consensus 236 ~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~ 315 (659)
T TIGR00954 236 ALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHL 315 (659)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhHHHHHHHHHHH--HHHHHHHHHHHHHh-c----CCCCHHHHHH-HHHH---HHHHHHHHHHHhhchhhHHH
Q 001041 940 IRQGMVSGGGFGASFFLLFA--FYAASFYAGARLVE-D----GKATFSDVFK-VFFS---LTMTAIGISQSSSFSSDSNK 1008 (1178)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~l~~-~----g~~t~g~l~~-~~~~---~~~~~~~l~~~~~~~~~~~~ 1008 (1178)
.+.....+...++..++... ..++.++.|...+. . |.+|.|.+++ ++.+ +..+..|+..+......+++
T Consensus 316 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~ 395 (659)
T TIGR00954 316 NLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTR 395 (659)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888887777543 22233333442332 2 7889888776 4444 56668999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCC------C--C-CCC-------------CcccCccccEEEeeeEEeCCCCCCccccccceE
Q 001041 1009 AKSAAASIFAIIDRESKIDP------S--D-ESG-------------TILEDVKGEIELHHVSFKYPSRPDVQVFRDLNL 1066 (1178)
Q Consensus 1009 ~~~s~~ri~~~l~~~~~~~~------~--~-~~~-------------~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf 1066 (1178)
+.++.+|++++++.+++... . + ... .......+.|+|+||+|+|++ ++++|+|+||
T Consensus 396 ~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~--~~~il~~isl 473 (659)
T TIGR00954 396 LAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPN--GDVLIESLSF 473 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCC--CCeeeecceE
Confidence 99999999999976433210 0 0 000 001113467999999999974 2369999999
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccccccccccccccHHHHHhcCCC--
Q 001041 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKG-- 1144 (1178)
Q Consensus 1067 ~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~-- 1144 (1178)
+|++||++|||||||||||||+++|+|+|+|++|+|.+|+ |++|++|||+|++|++|++|||.++..
T Consensus 474 ~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~ 542 (659)
T TIGR00954 474 EVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSE 542 (659)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChh
Confidence 9999999999999999999999999999999999999874 678999999999999999999998731
Q ss_pred ----CCCCHHHHHHHHHHcCchHHHhhccccccccc
Q 001041 1145 ----GDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1178)
Q Consensus 1145 ----~~asdeei~~Al~~A~~~dfI~~LP~gldT~v 1176 (1178)
++.++++++++++.+++++++.+ |.||||..
T Consensus 543 ~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~ 577 (659)
T TIGR00954 543 DMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQ 577 (659)
T ss_pred hhhccCCCHHHHHHHHHHcCCHHHHhh-cCCccccc
Confidence 24678999999999999999988 99999874
No 95
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=9.2e-46 Score=452.98 Aligned_cols=209 Identities=29% Similarity=0.424 Sum_probs=168.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++++|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +.+|
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 70 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKV 70 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 4899999999962 24699999999999999999999999999999999999999999999975 2479
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCC-----------------CCH---------HHHHHHHHHhcH-------HHHHHhC
Q 001041 463 GLVSQEPVLFT-GSIKDNIAYGKDD-----------------ATT---------EEIRVATELANA-------AKFIDKL 508 (1178)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~ni~~~~~~-----------------~~~---------~~~~~~~~~~~~-------~~~i~~~ 508 (1178)
+||+|+|+++. .|++||+.++... ..+ .++.++++.++. .+.+..+
T Consensus 71 ~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (552)
T TIGR03719 71 GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL 150 (552)
T ss_pred EEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence 99999999885 6999999875311 001 112222222221 2223333
Q ss_pred CCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-c
Q 001041 509 PQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-A 587 (1178)
Q Consensus 509 ~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~ 587 (1178)
|++ .......+||||||||++||||++.+|++|||||||++||+++...+.+.|++. ++|+|+|||+++.+.. |
T Consensus 151 --~l~-~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~~~~~~~ 225 (552)
T TIGR03719 151 --RCP-PWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNVA 225 (552)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhc
Confidence 332 135566789999999999999999999999999999999999999999999875 3699999999999876 8
Q ss_pred CEEEEEeCCEEE-EecChhHHhc
Q 001041 588 DMIAVIHRGKIV-EKGTHSKLVE 609 (1178)
Q Consensus 588 d~i~~l~~G~i~-~~g~~~~l~~ 609 (1178)
|+|++|++|+++ ..|+++++.+
T Consensus 226 d~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 226 GWILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred CeEEEEECCEEEEecCCHHHHHH
Confidence 999999999976 6788777653
No 96
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=3.4e-46 Score=400.40 Aligned_cols=229 Identities=29% Similarity=0.481 Sum_probs=185.4
Q ss_pred cEEEEeEEEECCCC-CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCcEEECCeecCCCCHH
Q 001041 383 DIELRDVYFSYPAR-PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKEFQLQ 456 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~-~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~~~~~ 456 (1178)
-+.++|++..|... ....++++|||+|++||.+|+||+||||||-..+.++|+++. .+|+|.++|.|+-..+..
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 37889998888532 245799999999999999999999999999999999999965 368999999999999888
Q ss_pred HHh----cceEEEcCCCCC-Cc------ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCC
Q 001041 457 WIR----KKIGLVSQEPVL-FT------GSIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522 (1178)
Q Consensus 457 ~~r----~~i~~v~Q~~~l-~~------~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~ 522 (1178)
.+| .+|++++|+|.- .| .-|.|-|..... ....++..+.++.+++.+ -...+....+.
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~--------p~~rl~~yPHe 157 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPE--------PEKRLDAYPHE 157 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCc--------hhhhhhhCCcc
Confidence 776 389999999952 11 134555554322 112234444444444322 13345667789
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEE
Q 001041 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIV 599 (1178)
Q Consensus 523 lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~ 599 (1178)
||||||||+.||.||..+|++||-||||.|||.....+|.+.++++.+ +-.+++|||++..+++ ||||+||.+|+++
T Consensus 158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~iv 237 (534)
T COG4172 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIV 237 (534)
T ss_pred cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEe
Confidence 999999999999999999999999999999999999999999988753 6799999999999986 9999999999999
Q ss_pred EecChhHHhcCCCchHHHHH
Q 001041 600 EKGTHSKLVEDPEGAYSQLI 619 (1178)
Q Consensus 600 ~~g~~~~l~~~~~~~~~~~~ 619 (1178)
|.|+.+++.+++...|.+..
T Consensus 238 E~~~t~~lF~~PqHpYTr~L 257 (534)
T COG4172 238 ETGTTETLFAAPQHPYTRKL 257 (534)
T ss_pred ecCcHHHHhhCCCChHHHHH
Confidence 99999999988777777654
No 97
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4e-47 Score=376.76 Aligned_cols=220 Identities=34% Similarity=0.528 Sum_probs=199.7
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCC-----CcEEECCeecCC--CC
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA-----GEVLIDGINLKE--FQ 454 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~-----G~i~i~g~~~~~--~~ 454 (1178)
..++++|+++.|+ ++.+|+|||++|++++++|++||||||||||++++.|+.+..+ |+|.++|+|+-+ ++
T Consensus 6 ~~~~~~~l~~yYg---~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEEC---chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 3589999999997 3469999999999999999999999999999999999988865 999999999965 57
Q ss_pred HHHHhcceEEEcCCCCCCcccHHHHHhcCCCC------CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 001041 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1178)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqk 528 (1178)
...+|++||+|+|.|.-|..||.||+.||..- .-++.++.+++.+.|++.++. .+.+.+..|||||+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQ 155 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQ 155 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHH
Confidence 89999999999999999999999999998421 124668889999999988743 46678889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHH
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1178)
||+||||||.-+|+|||||||||||||.+...|.+.|.++.++-|+|+|||+++...+ +|+...+..|+++|.|+.+++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~i 235 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKI 235 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhh
Confidence 9999999999999999999999999999999999999999889999999999998766 899999999999999999999
Q ss_pred hcCC
Q 001041 608 VEDP 611 (1178)
Q Consensus 608 ~~~~ 611 (1178)
..++
T Consensus 236 F~~P 239 (253)
T COG1117 236 FTNP 239 (253)
T ss_pred hcCc
Confidence 8775
No 98
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-46 Score=425.12 Aligned_cols=227 Identities=30% Similarity=0.491 Sum_probs=198.4
Q ss_pred CCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCCcEEECCeecC-
Q 001041 378 DDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLK- 451 (1178)
Q Consensus 378 ~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-----~~~G~i~i~g~~~~- 451 (1178)
++..+.|+++|++++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++ |.+|+|.+||+++.
T Consensus 75 ~~~~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~ 153 (329)
T PRK14257 75 FNHANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRS 153 (329)
T ss_pred CCcCceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 4455789999999999643 3579999999999999999999999999999999999996 56999999999997
Q ss_pred -CCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCC--CCCHHHH-----HHHHHHhcHHHHHHhCCCCccchhcCCCCCC
Q 001041 452 -EFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKD--DATTEEI-----RVATELANAAKFIDKLPQGIDTLVGEHGTQL 523 (1178)
Q Consensus 452 -~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~--~~~~~~~-----~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~l 523 (1178)
+.+...+|++++||||+||+|++|++|||.|+.. ..++++. ..+++.++ +++++++.+++++.+|
T Consensus 154 ~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~-------L~~~l~~~~~~~~~~L 226 (329)
T PRK14257 154 KKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAA-------LWDEVKDDLDKAGNAL 226 (329)
T ss_pred cccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcC-------CcchhhhhhhCCcccC
Confidence 4556788999999999999999999999998632 1333333 33344443 3445678899999999
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEEEec
Q 001041 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 524 SgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1178)
|||||||+|||||++++|+||||||||++||+++.+.++++|+++.+++|+|+|||+++++.. ||+|++|++|+|++.|
T Consensus 227 SgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g 306 (329)
T PRK14257 227 SGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAG 306 (329)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999998888999999999999987 9999999999999999
Q ss_pred ChhHHhcCCC
Q 001041 603 THSKLVEDPE 612 (1178)
Q Consensus 603 ~~~~l~~~~~ 612 (1178)
+++++...+.
T Consensus 307 ~~~~l~~~~~ 316 (329)
T PRK14257 307 ETKTIFIHPK 316 (329)
T ss_pred CHHHHhcCCC
Confidence 9999987643
No 99
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=7e-47 Score=384.25 Aligned_cols=222 Identities=35% Similarity=0.578 Sum_probs=190.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
|+|+|||++|. ++.+++|+||+|++||+++++|||||||||++++|.|+++|++|+|++||.++++++...||.+||
T Consensus 2 I~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 78999999996 356999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCC-cccHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHHhCCCCcc--chhcCCCCCCChHHHHHHHHHHHh
Q 001041 464 LVSQEPVLF-TGSIKDNIAYGKDD---ATTEEIRVATELANAAKFIDKLPQGID--TLVGEHGTQLSGGQKQRIAIARAI 537 (1178)
Q Consensus 464 ~v~Q~~~l~-~~ti~~ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~g~~--t~~~~~g~~lSgGqkqri~lARal 537 (1178)
||-|..-|| +-||.|||.+- |. .+.+++.+- . ++.+..+ |++ ....+..+.|||||+|||.+||||
T Consensus 79 YviQqigLFPh~Tv~eNIa~V-P~L~~w~k~~i~~r--~---~ELl~lv--gL~p~~~~~RyP~eLSGGQQQRVGv~RAL 150 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATV-PKLLGWDKERIKKR--A---DELLDLV--GLDPSEYADRYPHELSGGQQQRVGVARAL 150 (309)
T ss_pred hhhhhcccCCCccHHHHHHhh-hhhcCCCHHHHHHH--H---HHHHHHh--CCCHHHHhhcCchhcCcchhhHHHHHHHH
Confidence 999999999 68999999863 32 223332221 1 1212111 443 234566789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchh-hccCEEEEEeCCEEEEecChhHHhcCCCch
Q 001041 538 LKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDPEGA 614 (1178)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 614 (1178)
..+|+|+|+|||++||||-+.+.+|+-+.++.+ ++|+|+|||+++.. +.+|||.+|++|+|++.|+|++++.++...
T Consensus 151 AadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pan~ 230 (309)
T COG1125 151 AADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPAND 230 (309)
T ss_pred hcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCccHH
Confidence 999999999999999999999999998877653 79999999999975 569999999999999999999999987655
Q ss_pred HH
Q 001041 615 YS 616 (1178)
Q Consensus 615 ~~ 616 (1178)
|-
T Consensus 231 FV 232 (309)
T COG1125 231 FV 232 (309)
T ss_pred HH
Confidence 54
No 100
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.8e-47 Score=396.02 Aligned_cols=223 Identities=35% Similarity=0.581 Sum_probs=189.3
Q ss_pred EEEEeEEEECCCC--CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHH---HH
Q 001041 384 IELRDVYFSYPAR--PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ---WI 458 (1178)
Q Consensus 384 i~~~~~~~~y~~~--~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~---~~ 458 (1178)
|+++||++.|+.. ....+|+|+||+|++||+.||+|+||+|||||++++.++-.|++|+|.+||.|+..++.. .+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7899999999752 124699999999999999999999999999999999999999999999999998887754 55
Q ss_pred hcceEEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHH
Q 001041 459 RKKIGLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1178)
Q Consensus 459 r~~i~~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lAR 535 (1178)
|++||+++|++.|++ -||.+|++|+.+- .+.+++. .+...+.+.+ |+....+....+||||||||++|||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~--~RV~elLelV-----gL~dk~~~yP~qLSGGQKQRVaIAR 154 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIK--QRVAELLELV-----GLSDKADRYPAQLSGGQKQRVAIAR 154 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHH--HHHHHHHHHc-----CChhhhccCchhcCcchhhHHHHHH
Confidence 789999999999996 8999999997542 2222221 1112222222 5555566777899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcCCC
Q 001041 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612 (1178)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 612 (1178)
||..+|+|||.|||||||||+|.+.|.+.+++.. -+-|+++|||.++.+++ ||||.||++|+++|.|+..++..++.
T Consensus 155 ALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~Pk 234 (339)
T COG1135 155 ALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANPK 234 (339)
T ss_pred HHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCcc
Confidence 9999999999999999999999999999987764 37899999999999987 99999999999999999999998864
Q ss_pred c
Q 001041 613 G 613 (1178)
Q Consensus 613 ~ 613 (1178)
.
T Consensus 235 ~ 235 (339)
T COG1135 235 H 235 (339)
T ss_pred h
Confidence 3
No 101
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.3e-44 Score=475.06 Aligned_cols=207 Identities=26% Similarity=0.391 Sum_probs=166.0
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC---CCcEEECCeecCCCCHHHHhcceEEEcCCCCCC-cc
Q 001041 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ---AGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLF-TG 474 (1178)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~---~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~-~~ 474 (1178)
..+|+|+|+.++|||+++|+||||||||||+++|.|.++|. +|+|.+||+++.+... |+.++||+|++.++ ..
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVP---RKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcc---cceeEEecccccCCCcC
Confidence 45899999999999999999999999999999999999998 9999999998866542 67899999998766 57
Q ss_pred cHHHHHhcCCCC------------CCHHH----------H---HHHHHHh------cHHHHHHh--CCCCccchhcCC-C
Q 001041 475 SIKDNIAYGKDD------------ATTEE----------I---RVATELA------NAAKFIDK--LPQGIDTLVGEH-G 520 (1178)
Q Consensus 475 ti~~ni~~~~~~------------~~~~~----------~---~~~~~~~------~~~~~i~~--~~~g~~t~~~~~-g 520 (1178)
||+||+.|+..- .+.++ + .+++... ..++.++. +.+-.+|.+|+. .
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 999999985210 01111 1 0110000 01223333 333446778654 3
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcc--hhhccCEEEEEeCC
Q 001041 521 TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLS--TVRNADMIAVIHRG 596 (1178)
Q Consensus 521 ~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~--~~~~~d~i~~l~~G 596 (1178)
..||||||||++|||+++.+|++++|||||++||+.+...+.+.++++. .++|+|+++|++. ....+|+|++|++|
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G 414 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEG 414 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCc
Confidence 6799999999999999999999999999999999999999999998875 3789999999973 44669999999999
Q ss_pred EEEEecChhHHh
Q 001041 597 KIVEKGTHSKLV 608 (1178)
Q Consensus 597 ~i~~~g~~~~l~ 608 (1178)
++++.|+.+++.
T Consensus 415 ~ivy~G~~~~~~ 426 (1470)
T PLN03140 415 QIVYQGPRDHIL 426 (1470)
T ss_pred eEEEeCCHHHHH
Confidence 999999999875
No 102
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.6e-44 Score=440.59 Aligned_cols=207 Identities=22% Similarity=0.342 Sum_probs=159.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
|+++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. .++
T Consensus 2 i~i~nls~~~g~---~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~ 67 (638)
T PRK10636 2 IVFSSLQIRRGV---RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLA 67 (638)
T ss_pred EEEEEEEEEeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEE
Confidence 789999999963 469999999999999999999999999999999999999999999998832 589
Q ss_pred EEcCCCCCCcccHHHHHhcCCCCC---C-----------HHHHHHHHH----------HhcHHHHHHhCCCCcc-chhcC
Q 001041 464 LVSQEPVLFTGSIKDNIAYGKDDA---T-----------TEEIRVATE----------LANAAKFIDKLPQGID-TLVGE 518 (1178)
Q Consensus 464 ~v~Q~~~l~~~ti~~ni~~~~~~~---~-----------~~~~~~~~~----------~~~~~~~i~~~~~g~~-t~~~~ 518 (1178)
|++|++..+..|+.+.+.-+.... + ...+..... ...+.+.+..+ |+. .....
T Consensus 68 ~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gl~~~~~~~ 145 (638)
T PRK10636 68 WVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGL--GFSNEQLER 145 (638)
T ss_pred EEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC--CCCchhhcC
Confidence 999976545556655543211000 0 000000000 01122334443 443 23455
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCE
Q 001041 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGK 597 (1178)
Q Consensus 519 ~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~ 597 (1178)
...+||||||||++|||||+.+|++|||||||++||+.+..++.+.+++. +.|+|+|||+.+++.. ||+|++|++|+
T Consensus 146 ~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i~~L~~G~ 223 (638)
T PRK10636 146 PVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKIIHIEQQS 223 (638)
T ss_pred chhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEEEEEeCCE
Confidence 66789999999999999999999999999999999999999999998775 5799999999999875 99999999999
Q ss_pred EE-EecChhHHh
Q 001041 598 IV-EKGTHSKLV 608 (1178)
Q Consensus 598 i~-~~g~~~~l~ 608 (1178)
+. ..|++++..
T Consensus 224 i~~~~g~~~~~~ 235 (638)
T PRK10636 224 LFEYTGNYSSFE 235 (638)
T ss_pred EEEecCCHHHHH
Confidence 97 467766553
No 103
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=5.1e-44 Score=391.48 Aligned_cols=234 Identities=49% Similarity=0.807 Sum_probs=212.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
|+++|++++|+.. .+++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 4789999999642 356999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCE
Q 001041 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1178)
Q Consensus 464 ~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~i 543 (1178)
|++|++++|+.|++||+.++.+....+++...++..++.+.+..+|.|+++..+..+.+||||||||++||||++.+|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 99999999999999999986554455666777777888899999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHH
Q 001041 544 LLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLI 619 (1178)
Q Consensus 544 lllDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 619 (1178)
+||||||++||+.+...+.+.++++.+++|+|++||+++.+..||+|++|++|++++.|+++++..+ .+.|..+.
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~ 234 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE-NGLYAYLY 234 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc-cChHHHHH
Confidence 9999999999999999999999988778999999999999988999999999999999999998876 45565544
No 104
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=4.8e-43 Score=434.50 Aligned_cols=207 Identities=24% Similarity=0.435 Sum_probs=159.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ..+
T Consensus 3 ~l~i~~ls~~~~~---~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~-----------~~~ 68 (635)
T PRK11147 3 LISIHGAWLSFSD---APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQD-----------LIV 68 (635)
T ss_pred EEEEeeEEEEeCC---ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCC-----------CEE
Confidence 3889999999963 46999999999999999999999999999999999999999999999872 147
Q ss_pred EEEcCCCCC-CcccHHHHHhcCCCC------------------CCHHHHHHHHH-------------HhcHHHHHHhCCC
Q 001041 463 GLVSQEPVL-FTGSIKDNIAYGKDD------------------ATTEEIRVATE-------------LANAAKFIDKLPQ 510 (1178)
Q Consensus 463 ~~v~Q~~~l-~~~ti~~ni~~~~~~------------------~~~~~~~~~~~-------------~~~~~~~i~~~~~ 510 (1178)
+|++|++.. ..+++.+++..+... ...+.+..... ...+.+.++.+
T Consensus 69 ~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-- 146 (635)
T PRK11147 69 ARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQL-- 146 (635)
T ss_pred EEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhC--
Confidence 889987643 236777765322100 00010000000 01122333333
Q ss_pred CccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCE
Q 001041 511 GIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADM 589 (1178)
Q Consensus 511 g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~ 589 (1178)
|+. .......||||||||++|||||+.+|++|||||||++||+++..++.+.|+++ +.|+|+|||+..++.. ||+
T Consensus 147 gl~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~--~~tvlivsHd~~~l~~~~d~ 222 (635)
T PRK11147 147 GLD--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF--QGSIIFISHDRSFIRNMATR 222 (635)
T ss_pred CCC--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhcCe
Confidence 332 24456789999999999999999999999999999999999999999999876 3699999999999875 999
Q ss_pred EEEEeCCEEEE-ecChhHHhc
Q 001041 590 IAVIHRGKIVE-KGTHSKLVE 609 (1178)
Q Consensus 590 i~~l~~G~i~~-~g~~~~l~~ 609 (1178)
|++|++|+++. .|++++.+.
T Consensus 223 i~~L~~G~i~~~~g~~~~~~~ 243 (635)
T PRK11147 223 IVDLDRGKLVSYPGNYDQYLL 243 (635)
T ss_pred EEEEECCEEEEecCCHHHHHH
Confidence 99999999984 577766543
No 105
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.7e-43 Score=391.00 Aligned_cols=239 Identities=32% Similarity=0.596 Sum_probs=217.7
Q ss_pred CcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHh
Q 001041 380 IRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIR 459 (1178)
Q Consensus 380 ~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r 459 (1178)
..+.|+++|++++|+.. .+.+|+|+||++++||+++|+|+||||||||+++|+|+++|.+|+|.++|.++.+.+...+|
T Consensus 16 ~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 94 (257)
T cd03288 16 LGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR 94 (257)
T ss_pred CCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHh
Confidence 46789999999999743 24699999999999999999999999999999999999999999999999999988888889
Q ss_pred cceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 460 KKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 460 ~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
+.++|++|+|++|++|+++|+.+.. ....++++.+++..++.+.+..+|.|+++.+++.+.+||||||||++||||+++
T Consensus 95 ~~i~~v~q~~~l~~~tv~~nl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 173 (257)
T cd03288 95 SRLSIILQDPILFSGSIRFNLDPEC-KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVR 173 (257)
T ss_pred hhEEEECCCCcccccHHHHhcCcCC-CCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999997542 234566777888888999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHH
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLI 619 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 619 (1178)
+|+++||||||++||+++...+.+.+++..+++|+|++||+++.+..||+|++|++|++++.|+++++.+..++.|..++
T Consensus 174 ~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 253 (257)
T cd03288 174 KSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLV 253 (257)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHH
Confidence 99999999999999999999999999887778999999999999988999999999999999999999877566666655
Q ss_pred H
Q 001041 620 R 620 (1178)
Q Consensus 620 ~ 620 (1178)
.
T Consensus 254 ~ 254 (257)
T cd03288 254 R 254 (257)
T ss_pred h
Confidence 3
No 106
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=8.6e-44 Score=377.10 Aligned_cols=214 Identities=33% Similarity=0.526 Sum_probs=189.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++|+|+ ++++|+|+||++++||+++|+||||||||||+++|.|+++|.+|+|.+||+++.+++.+++.+++
T Consensus 2 ~L~~~~ls~~y~---~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYG---GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEEC---CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 378999999997 35799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCC-CCCcccHHHHHhcCCCCC----------CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHH
Q 001041 463 GLVSQEP-VLFTGSIKDNIAYGKDDA----------TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1178)
Q Consensus 463 ~~v~Q~~-~l~~~ti~~ni~~~~~~~----------~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri 531 (1178)
|||||++ .-|.-||+|-+.+|+-.+ +.+.+.++++.+++.++ ..+.-..||||||||+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~l-----------a~r~~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHL-----------ADRPVDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHH-----------hcCcccccChhHHHHH
Confidence 9999997 456789999999986321 22345566666665554 3344567999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchh-hccCEEEEEeCCEEEEecChhHHh
Q 001041 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLV 608 (1178)
Q Consensus 532 ~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~ 608 (1178)
.|||||.++|+||+||||||+||....-.+.+.++++. +++|+|+|.|+++.. +.||++++|++|+++..|+|+|.+
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999999998876 369999999999986 569999999999999999999887
Q ss_pred cC
Q 001041 609 ED 610 (1178)
Q Consensus 609 ~~ 610 (1178)
..
T Consensus 228 T~ 229 (258)
T COG1120 228 TE 229 (258)
T ss_pred CH
Confidence 64
No 107
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-43 Score=389.63 Aligned_cols=217 Identities=32% Similarity=0.552 Sum_probs=188.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.|+++|++.+|++. . +++|+||+|+.||+++++|||||||||||++|.|+.+|++|+|.|||.+++++++.+ +.|
T Consensus 3 ~i~l~~v~K~yg~~--~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFGSF--E-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcCCc--e-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 58999999999642 2 999999999999999999999999999999999999999999999999999999885 579
Q ss_pred EEEcCCCCCC-cccHHHHHhcCCCCCC------HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHH
Q 001041 463 GLVSQEPVLF-TGSIKDNIAYGKDDAT------TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1178)
Q Consensus 463 ~~v~Q~~~l~-~~ti~~ni~~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lAR 535 (1178)
|+|+|+.-|| +.||+|||.|+..... ++++.++++..++.+ .+..+..+||||||||+||||
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~-----------lL~r~P~~LSGGQrQRVAlaR 146 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEH-----------LLNRKPLQLSGGQRQRVALAR 146 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChh-----------HHhcCcccCChhhHHHHHHHH
Confidence 9999999999 5799999999865321 345555555554444 455566889999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcCCC
Q 001041 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPE 612 (1178)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~ 612 (1178)
||.++|+++|||||+|+||++....+...|+++.+ +.|+|.|||+...+. .+|||.||++|+|.+.|+|.|+..++.
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~ 226 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPA 226 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCcc
Confidence 99999999999999999999999888888877643 579999999988765 599999999999999999999998765
Q ss_pred chH
Q 001041 613 GAY 615 (1178)
Q Consensus 613 ~~~ 615 (1178)
..|
T Consensus 227 n~f 229 (338)
T COG3839 227 NLF 229 (338)
T ss_pred chh
Confidence 444
No 108
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.5e-43 Score=380.85 Aligned_cols=227 Identities=50% Similarity=0.857 Sum_probs=209.6
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcc
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1178)
+.|+++|++++|+. .+++++|+||++++||+++|+||||||||||+++|+|+++|.+|+|.++|.++.+.+...+|++
T Consensus 1 ~~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (229)
T cd03254 1 GEIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM 78 (229)
T ss_pred CeEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhh
Confidence 35899999999963 2369999999999999999999999999999999999999999999999999988888888889
Q ss_pred eEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCC
Q 001041 462 IGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1178)
Q Consensus 462 i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~ 541 (1178)
++|++|++++|.+|++||+.++.+....+++..+++.+++.+.++.+|.|+++.++....+||||||||++||||++++|
T Consensus 79 i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p 158 (229)
T cd03254 79 IGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP 158 (229)
T ss_pred EEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999876655667777888888999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcC
Q 001041 542 RILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
+++||||||++||+.+.+.+.+.++++.+++|+|++||+++.+..||++++|++|++++.|+.+++.+.
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 159 KILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 999999999999999999999999887678999999999999888999999999999999998887653
No 109
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.5e-43 Score=357.88 Aligned_cols=222 Identities=34% Similarity=0.537 Sum_probs=188.3
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHH---HH
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ---WI 458 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~---~~ 458 (1178)
..|++++|+++|++ +.+++|+||+|++||.++|+|+||||||||+++|.|++.|++|+|.++|.|+.+++.+ .+
T Consensus 7 ~~I~vr~v~~~fG~---~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~i 83 (263)
T COG1127 7 PLIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83 (263)
T ss_pred ceEEEeeeeeecCC---EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHH
Confidence 35999999999964 4699999999999999999999999999999999999999999999999999988764 56
Q ss_pred hcceEEEcCCCCCCc-ccHHHHHhcCCCCC---CHHHHHH----HHHHhcHHHHHHhCCCCccch-hcCCCCCCChHHHH
Q 001041 459 RKKIGLVSQEPVLFT-GSIKDNIAYGKDDA---TTEEIRV----ATELANAAKFIDKLPQGIDTL-VGEHGTQLSGGQKQ 529 (1178)
Q Consensus 459 r~~i~~v~Q~~~l~~-~ti~~ni~~~~~~~---~~~~~~~----~~~~~~~~~~i~~~~~g~~t~-~~~~g~~lSgGqkq 529 (1178)
|+++|+++|.--||+ -||+||+.|...++ +++.+++ .+++++ +... ...-...||||++.
T Consensus 84 r~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VG-----------L~~~~~~~~PsELSGGM~K 152 (263)
T COG1127 84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVG-----------LRGAAADLYPSELSGGMRK 152 (263)
T ss_pred HhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcC-----------CChhhhhhCchhhcchHHH
Confidence 899999999999995 69999999864332 3333332 333343 3333 22334789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhH
Q 001041 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606 (1178)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 606 (1178)
|+|||||+..||+|+++|||||+|||.+...+.+.|+++.+ +.|+++|||+++++.. ||+|+++.+|+|+..|+++|
T Consensus 153 RvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~e 232 (263)
T COG1127 153 RVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEE 232 (263)
T ss_pred HHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHH
Confidence 99999999999999999999999999999999888877653 6899999999998865 89999999999999999999
Q ss_pred HhcCCCchHHH
Q 001041 607 LVEDPEGAYSQ 617 (1178)
Q Consensus 607 l~~~~~~~~~~ 617 (1178)
+.+.++...++
T Consensus 233 l~~sd~P~v~q 243 (263)
T COG1127 233 LLASDDPWVRQ 243 (263)
T ss_pred HHhCCCHHHHH
Confidence 99874433333
No 110
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.8e-43 Score=381.55 Aligned_cols=226 Identities=55% Similarity=0.908 Sum_probs=208.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
|+++|++++|++. ..++++|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+...+|+.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4689999999643 236999999999999999999999999999999999999999999999999998888778888999
Q ss_pred EEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCE
Q 001041 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1178)
Q Consensus 464 ~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~i 543 (1178)
|++|+|++|..|++||+.++......+++...++..++.+.++.+|.|+++..+....+||||||||++||||++++|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987655556667777788888999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcC
Q 001041 544 LLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 544 lllDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
+||||||++||+.+...+.+.++++.+++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 226 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ 226 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc
Confidence 9999999999999999999999988778999999999999988999999999999999999988765
No 111
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-42 Score=381.16 Aligned_cols=231 Identities=50% Similarity=0.808 Sum_probs=210.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
++++|++++|+. +.++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+...+|+.++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDP--GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 468999999963 246999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCE
Q 001041 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1178)
Q Consensus 464 ~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~i 543 (1178)
|++|+|++|+.|++||+.++.+..+++++...++.+++.+.+..+|.|+++.+..+..+||||||||++|||||+++|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987665566677778888888899999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcCCCchHHH
Q 001041 544 LLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617 (1178)
Q Consensus 544 lllDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 617 (1178)
+||||||++||+++...+.+.+.++.+++|+|++||+++.+..||++++|++|++++.|+.+++... ...|..
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~-~~~~~~ 231 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK-GGLYAE 231 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc-ccHHHH
Confidence 9999999999999999999999887668899999999999988999999999999999999888764 344443
No 112
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=1e-42 Score=381.53 Aligned_cols=227 Identities=63% Similarity=1.044 Sum_probs=207.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
++++|+++.|+...+.++|+|+||++++||+++|+|+||||||||+++|+|+++|.+|+|.++|.++...+....+++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 46899999997533356999999999999999999999999999999999999999999999999998877777788899
Q ss_pred EEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCE
Q 001041 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1178)
Q Consensus 464 ~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~i 543 (1178)
|++|+|+++..|++||+.++.+....++....++..++.+.+..+|.|+++..+....+||||||||++||||++.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987655556667777777888888999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcC
Q 001041 544 LLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 544 lllDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
+||||||++||+.+.+.+.+.++++.+++|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ 227 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc
Confidence 9999999999999999999999887678899999999999988999999999999999999888754
No 113
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=7e-42 Score=403.25 Aligned_cols=208 Identities=32% Similarity=0.493 Sum_probs=165.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.|+++|++++|+ ++++|+|+||++.+|+++||||+||||||||+++|.|..+|++|+|..++. -++
T Consensus 3 ~i~~~~ls~~~g---~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v 68 (530)
T COG0488 3 MITLENLSLAYG---DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRV 68 (530)
T ss_pred eEEEeeeEEeeC---CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceE
Confidence 488999999996 357999999999999999999999999999999999999999999998752 279
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCCCCH--HHHHHHHH------------------H-------hcHHHHHHhCCCCccc
Q 001041 463 GLVSQEPVLFT-GSIKDNIAYGKDDATT--EEIRVATE------------------L-------ANAAKFIDKLPQGIDT 514 (1178)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~ni~~~~~~~~~--~~~~~~~~------------------~-------~~~~~~i~~~~~g~~t 514 (1178)
+|++|+|.... .||++.+..+...... .+++.+.. . ..+...+..+ |+..
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gL--g~~~ 146 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGL--GFPD 146 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcC--CCCc
Confidence 99999999885 4999999876532111 11111100 0 1122222222 2333
Q ss_pred hhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEE
Q 001041 515 LVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVI 593 (1178)
Q Consensus 515 ~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l 593 (1178)
. ...-.+||||||-|++|||||+.+||+|||||||++||.++..++.+.+.+. ++ |+|+|||+.+++.. |++|+.+
T Consensus 147 ~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~-~g-tviiVSHDR~FLd~V~t~I~~l 223 (530)
T COG0488 147 E-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY-PG-TVIVVSHDRYFLDNVATHILEL 223 (530)
T ss_pred c-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-CC-cEEEEeCCHHHHHHHhhheEEe
Confidence 2 4455689999999999999999999999999999999999999999999864 45 99999999999987 9999999
Q ss_pred eCCEEE-EecChhHHhc
Q 001041 594 HRGKIV-EKGTHSKLVE 609 (1178)
Q Consensus 594 ~~G~i~-~~g~~~~l~~ 609 (1178)
+.|++. +.|+|+..++
T Consensus 224 d~g~l~~y~Gny~~~~~ 240 (530)
T COG0488 224 DRGKLTPYKGNYSSYLE 240 (530)
T ss_pred cCCceeEecCCHHHHHH
Confidence 999887 5566655443
No 114
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-43 Score=364.15 Aligned_cols=195 Identities=35% Similarity=0.510 Sum_probs=167.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.+++++++.+|+. ..+|+|+||+|++||+++|+||||||||||+++|.|+..|++|+|.++|.++..-. ..+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~-----~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPG-----PDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCC-----CCE
Confidence 4789999999974 56999999999999999999999999999999999999999999999998874433 479
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCCCC------HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHH
Q 001041 463 GLVSQEPVLFT-GSIKDNIAYGKDDAT------TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1178)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~ni~~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lAR 535 (1178)
+||+|++-||. -||+||+.++.+... .++..+.++.+++.++ -+....+||||||||+||||
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~-----------~~~~P~qLSGGMrQRVaiAR 143 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGF-----------EDKYPHQLSGGMRQRVAIAR 143 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcch-----------hhcCccccChHHHHHHHHHH
Confidence 99999999997 799999999865321 2234444555544444 44556799999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCC
Q 001041 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRG 596 (1178)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G 596 (1178)
||..+|++||||||++|||+.|...+++.+.++.+ ++|+++|||+.+..- .+|||++|.++
T Consensus 144 AL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 144 ALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred HHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 99999999999999999999999999998887764 589999999999865 59999999983
No 115
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-39 Score=347.93 Aligned_cols=467 Identities=20% Similarity=0.228 Sum_probs=335.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001041 112 LGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMAT 191 (1178)
Q Consensus 112 l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~ 191 (1178)
+.+...+...+........++..-.++|..+.++++..|+..+++. .+++++.++++|+..|. +-...+..+.+....
T Consensus 57 llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier~-~~~rlla~L~~Dvr~IS-f~~s~lp~~~qa~il 134 (546)
T COG4615 57 LLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERL-GSARLLAGLTSDVRNIS-FAFSRLPELVQAIIL 134 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHh-cccchhhhhccccccee-ehHhhhHHHHHHHHH
Confidence 3333344444555566677888999999999999999999999975 99999999999999998 434556778888888
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHH--HHH
Q 001041 192 FLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAM--SNY 269 (1178)
Q Consensus 192 ~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~--~~~ 269 (1178)
++++.....++++.+.++.++.+.+.++...+...+..+......+..++..+..+..+.|.|.++...-..+.. +.+
T Consensus 135 ~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~ 214 (546)
T COG4615 135 TLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLY 214 (546)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhc
Confidence 999999999999988877777777777777776666666666777788889999999999999998764322211 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 001041 270 KKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVN-VMVAVLTGSMSLGEASPCLSAFG 348 (1178)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~l~~~~~l~~~~~~~~~~~ 348 (1178)
...-+...+.......+.-......+++..+.....+|.... ..+...++.. .....+....++..+...++.+.
T Consensus 215 ~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~----~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~ 290 (546)
T COG4615 215 IPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALS----LGWASTNVAATIVLVLLFLRTPLLSAVGILPTLL 290 (546)
T ss_pred CcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh----hccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHH
Confidence 111111111111111111011111222222223333333221 1222112222 22223333456777777778888
Q ss_pred HHHHHHHHHHHHhccCCCCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHH
Q 001041 349 AGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTV 428 (1178)
Q Consensus 349 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl 428 (1178)
.+.+|..++.+.-..++...... +++.++++ .|+++||.|+|+.. ..-+.-||++|++||+|-|+|.+||||||+
T Consensus 291 ~AqvA~~kiakle~~~~~a~~~~--~q~~p~~~-~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsGKST~ 365 (546)
T COG4615 291 TAQVAFNKIAKLELAPYKADFPR--PQAFPDWK-TLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSGKSTL 365 (546)
T ss_pred HHHHHHHHHHHhhcCCccccCCC--CCcCCccc-ceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCcHHHH
Confidence 88999988877654332211111 12223343 59999999999743 367888999999999999999999999999
Q ss_pred HHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCC-CCHHHHHHHHHHhcHHHHHHh
Q 001041 429 ISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD-ATTEEIRVATELANAAKFIDK 507 (1178)
Q Consensus 429 ~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~-~~~~~~~~~~~~~~~~~~i~~ 507 (1178)
+++|.|+|.|++|+|++||.+++.-++++.|+-++-|+-|-|+|+.++ |.+. ++++.+..-++.-.+.... +
T Consensus 366 ~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~~LqrLel~~kt-s 438 (546)
T COG4615 366 AMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQRLELAHKT-S 438 (546)
T ss_pred HHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHHHHHHHHHhhhh-c
Confidence 999999999999999999999999999999999999999999998765 3333 5666666666555443332 2
Q ss_pred CCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhh
Q 001041 508 LPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVR 585 (1178)
Q Consensus 508 ~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~ 585 (1178)
+.+|--+ ...||-|||.|+|+--|++-+.||++|||=-+--||.-++.+.+.+...+ +|||++.|||+-.+..
T Consensus 439 l~d~~fs-----~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~ 513 (546)
T COG4615 439 LNDGRFS-----NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFI 513 (546)
T ss_pred ccCCccc-----ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhh
Confidence 2222111 13589999999999999999999999999999999999999887765544 5899999999999999
Q ss_pred ccCEEEEEeCCEEEEe
Q 001041 586 NADMIAVIHRGKIVEK 601 (1178)
Q Consensus 586 ~~d~i~~l~~G~i~~~ 601 (1178)
+|||++.|++|+++|.
T Consensus 514 ~ADrll~~~~G~~~e~ 529 (546)
T COG4615 514 HADRLLEMRNGQLSEL 529 (546)
T ss_pred hHHHHHHHhcCceeec
Confidence 9999999999999975
No 116
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2e-42 Score=374.78 Aligned_cols=220 Identities=35% Similarity=0.653 Sum_probs=204.2
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcc
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1178)
|.++++|++++|+.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|++
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 358999999999743 2469999999999999999999999999999999999999999999999999988888888899
Q ss_pred eEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCC
Q 001041 462 IGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1178)
Q Consensus 462 i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~ 541 (1178)
++|++|+|.++.+|++||+.+... ...+++.++++..++.+.+..+|.|+++..++.+.+||||||||++||||++++|
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p 158 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFGE-YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKS 158 (221)
T ss_pred EEEECCCCccccchHHHHhCcCCC-CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999986543 5667788888889999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecC
Q 001041 542 RILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603 (1178)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~ 603 (1178)
+++||||||++||+.+.+.+.+.++++.+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 159 KILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 99999999999999999999999998877789999999999998899999999999998875
No 117
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=3.8e-42 Score=424.81 Aligned_cols=219 Identities=23% Similarity=0.312 Sum_probs=159.9
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC---CCCCCcEEECCeecCC--CCH-
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY---DPQAGEVLIDGINLKE--FQL- 455 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~---~~~~G~i~i~g~~~~~--~~~- 455 (1178)
..|+++|++++|++ .++|+|+||+|++|+++|||||||||||||+++|+|.. .|.+|+|.+.++++.. .+.
T Consensus 176 ~~I~i~nls~~y~~---~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~ 252 (718)
T PLN03073 176 KDIHMENFSISVGG---RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTAL 252 (718)
T ss_pred eeEEEceEEEEeCC---CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHH
Confidence 35999999999963 35999999999999999999999999999999999864 4788999754433211 111
Q ss_pred -----------HHHhcceEEEcCCCCCCcccHHHHHhcCCC-CCCH----HHHHHHHHHhc----------HHHHHHhCC
Q 001041 456 -----------QWIRKKIGLVSQEPVLFTGSIKDNIAYGKD-DATT----EEIRVATELAN----------AAKFIDKLP 509 (1178)
Q Consensus 456 -----------~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~-~~~~----~~~~~~~~~~~----------~~~~i~~~~ 509 (1178)
..++..+++++|+|-+...+..+|...... ..+. +++.++.+..+ +.+.+..+
T Consensus 253 ~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~l- 331 (718)
T PLN03073 253 QCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGL- 331 (718)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHC-
Confidence 112455889999886544454455422110 0111 22222222221 11223332
Q ss_pred CCcc-chhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-c
Q 001041 510 QGID-TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-A 587 (1178)
Q Consensus 510 ~g~~-t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~ 587 (1178)
|++ ........+||||||||++|||||+.+|++|||||||++||+.+...+.+.++++ +.|+|+|||+++.+.. |
T Consensus 332 -gl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~~ 408 (718)
T PLN03073 332 -SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVV 408 (718)
T ss_pred -CCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhC
Confidence 332 2234445789999999999999999999999999999999999999999999886 6899999999999876 9
Q ss_pred CEEEEEeCCEEE-EecChhHH
Q 001041 588 DMIAVIHRGKIV-EKGTHSKL 607 (1178)
Q Consensus 588 d~i~~l~~G~i~-~~g~~~~l 607 (1178)
|+|++|++|++. ..|++++.
T Consensus 409 d~i~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 409 TDILHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred CEEEEEECCEEEEeCCCHHHH
Confidence 999999999996 56776654
No 118
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.9e-43 Score=356.43 Aligned_cols=227 Identities=30% Similarity=0.484 Sum_probs=185.9
Q ss_pred cEEEEeEEEECCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCC-HHHHhc
Q 001041 383 DIELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ-LQWIRK 460 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~-~~~~r~ 460 (1178)
.++++|+++.|+.+. ..++|+||||+|.+||+++|||+||||||||+++|.|+.+|++|+|.++|.++.... ....++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 488999999997532 125999999999999999999999999999999999999999999999997765543 335678
Q ss_pred ceEEEcCCCCC-C--cccHHHHHhcCCC----CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHH
Q 001041 461 KIGLVSQEPVL-F--TGSIKDNIAYGKD----DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1178)
Q Consensus 461 ~i~~v~Q~~~l-~--~~ti~~ni~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~l 533 (1178)
.|-+|+|||.- + .-||++-|.=+.. ....++++++++.+++.+. ........|||||||||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~----------~l~R~P~eLSGGQ~QRiaI 152 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPS----------FLDRRPHELSGGQRQRIAI 152 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHH----------HHhcCchhcChhHHHHHHH
Confidence 89999999952 2 3467666642211 1223446666666655332 2345667899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCC--eEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNR--TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~--t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
||||.-+|++||||||||+||+.....|.+.+.++.+++ |.|+|||++..+.+ ||||+||++|+++|.++.+++...
T Consensus 153 ARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 153 ARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred HHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 999999999999999999999999999999998877655 99999999999987 999999999999999999999887
Q ss_pred CCchHHHHH
Q 001041 611 PEGAYSQLI 619 (1178)
Q Consensus 611 ~~~~~~~~~ 619 (1178)
+...|.+..
T Consensus 233 ~~h~ytr~L 241 (252)
T COG1124 233 PSHPYTREL 241 (252)
T ss_pred CccHHHHHH
Confidence 556666543
No 119
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=1.7e-42 Score=392.80 Aligned_cols=225 Identities=31% Similarity=0.531 Sum_probs=187.4
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHH---Hh
Q 001041 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW---IR 459 (1178)
Q Consensus 384 i~~~~~~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~---~r 459 (1178)
|+++|++++|+... ..++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++..++..+ .|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996322 246999999999999999999999999999999999999999999999999998887654 47
Q ss_pred cceEEEcCCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHH
Q 001041 460 KKIGLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1178)
Q Consensus 460 ~~i~~v~Q~~~l~~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARa 536 (1178)
++|+|++|++.+|. .|++||+.++.. ..+.++.++. ..+.++.+ |+..........||||||||++||||
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~-----v~e~l~~v--gL~~~~~~~~~~LSgGqkQRV~IARA 154 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRK-----VTELLALV--GLGDKHDSYPSNLSGGQKQRVAIARA 154 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHH
Confidence 89999999999984 799999997532 1222222111 11222222 44444556678899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcCCCc
Q 001041 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEG 613 (1178)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~ 613 (1178)
|+.+|++||||||||+||+.+...+.+.++++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++++..++..
T Consensus 155 L~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~~p~~ 234 (343)
T TIGR02314 155 LASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKT 234 (343)
T ss_pred HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcCCCc
Confidence 9999999999999999999999999999988754 7899999999999865 999999999999999999999876544
Q ss_pred hH
Q 001041 614 AY 615 (1178)
Q Consensus 614 ~~ 615 (1178)
.+
T Consensus 235 ~~ 236 (343)
T TIGR02314 235 PL 236 (343)
T ss_pred HH
Confidence 33
No 120
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-42 Score=364.75 Aligned_cols=210 Identities=29% Similarity=0.495 Sum_probs=182.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.|+++|++|+|.++ ++|+||||++++|++++|+||||||||||+++|+|+++|.+|+|.+.|.+.++... +.+|
T Consensus 4 ~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I 77 (254)
T COG1121 4 MIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI 77 (254)
T ss_pred EEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence 58999999999642 59999999999999999999999999999999999999999999999987665433 4589
Q ss_pred EEEcCCC---CCCcccHHHHHhcCCCCC----------CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHH
Q 001041 463 GLVSQEP---VLFTGSIKDNIAYGKDDA----------TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1178)
Q Consensus 463 ~~v~Q~~---~l~~~ti~~ni~~~~~~~----------~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkq 529 (1178)
|||||.. |-|..||+|-+.+|.... +.+++.++++.+++.+.. ...-..|||||+|
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~-----------~r~i~~LSGGQ~Q 146 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLR-----------DRQIGELSGGQKQ 146 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhh-----------CCcccccCcHHHH
Confidence 9999965 779999999999984321 247778888888776543 3344569999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc-CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHH
Q 001041 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1178)
|+.|||||.++|++|+|||||+++|+.++..+.+.|+++.+ ++||++|||+++.+.. +|+|+.| |++++..|++++.
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~ 225 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEV 225 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhc
Confidence 99999999999999999999999999999999999988864 8999999999999865 9999999 5788999999998
Q ss_pred hcC
Q 001041 608 VED 610 (1178)
Q Consensus 608 ~~~ 610 (1178)
...
T Consensus 226 ~~~ 228 (254)
T COG1121 226 LTE 228 (254)
T ss_pred cCH
Confidence 764
No 121
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=4.9e-43 Score=387.90 Aligned_cols=219 Identities=33% Similarity=0.563 Sum_probs=191.5
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcc
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1178)
..++++|++.+|+ +..+++|+||+|++||++++.|||||||||+|++|.|+..|++|+|.+||.++.+++++ ++.
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ 78 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRP 78 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcc
Confidence 3589999999996 35799999999999999999999999999999999999999999999999999999987 468
Q ss_pred eEEEcCCCCCC-cccHHHHHhcCCCC---CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHH
Q 001041 462 IGLVSQEPVLF-TGSIKDNIAYGKDD---ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1178)
Q Consensus 462 i~~v~Q~~~l~-~~ti~~ni~~~~~~---~~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~l 533 (1178)
|++|+|+.-|| +.||+|||.||... ..+ +++.++++.+++.++- .++...|||||+||+||
T Consensus 79 ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~-----------~R~p~qLSGGQqQRVAL 147 (352)
T COG3842 79 IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFA-----------DRKPHQLSGGQQQRVAL 147 (352)
T ss_pred cceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhh-----------hhChhhhChHHHHHHHH
Confidence 99999999999 68999999999751 122 3566666666665543 45567899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchh-hccCEEEEEeCCEEEEecChhHHhcC
Q 001041 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
||||..+|++||||||+||||.+-...++.-++++. .+.|.|+|||+.+.. ..+|||.||++|+|.+.|+|+|+...
T Consensus 148 ARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~ 227 (352)
T COG3842 148 ARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER 227 (352)
T ss_pred HHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC
Confidence 999999999999999999999999998888887664 378999999998875 56999999999999999999999988
Q ss_pred CCchHH
Q 001041 611 PEGAYS 616 (1178)
Q Consensus 611 ~~~~~~ 616 (1178)
+...|-
T Consensus 228 P~~~fV 233 (352)
T COG3842 228 PATRFV 233 (352)
T ss_pred cchHHH
Confidence 755443
No 122
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-42 Score=369.52 Aligned_cols=215 Identities=38% Similarity=0.639 Sum_probs=191.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecC-CCCHHHHhcc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK-EFQLQWIRKK 461 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~-~~~~~~~r~~ 461 (1178)
.++++|++|+|+++ .++|+++||+|++||.++|+|+||||||||++++.|+++|++|.|.++|.++. ..+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 47899999999865 57999999999999999999999999999999999999999999999999998 4888899999
Q ss_pred eEEEcCCC--CCCcccHHHHHhcCCCCC--CH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHH
Q 001041 462 IGLVSQEP--VLFTGSIKDNIAYGKDDA--TT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1178)
Q Consensus 462 i~~v~Q~~--~l~~~ti~~ni~~~~~~~--~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~l 533 (1178)
+|||+|+| ++|..||.|.++||..+. +. +++.++++.+++.+ .......+||||||||+||
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~-----------~~~r~p~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEE-----------LLDRPPFNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchh-----------hccCCccccCCcceeeHHh
Confidence 99999999 899999999999986542 33 33445555554443 3455668999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
|.+|..+|++||||||||+||+...+.+.+.++++.+ ++|+|++||+++.+.. ||++++|++|+++.+|+|+++.++
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 9999999999999999999999999999999998864 4799999999999876 999999999999999999998765
No 123
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=1.9e-42 Score=333.89 Aligned_cols=209 Identities=33% Similarity=0.569 Sum_probs=185.1
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
|.+++|.|+|...+ -..+++|++||++||+||||||||||+++|.|+..|.+|+|.|+|+|....++.+ +-++
T Consensus 2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~--RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAE--RPVS 74 (231)
T ss_pred ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCccc--CChh
Confidence 56789999996432 2678999999999999999999999999999999999999999999998887764 4599
Q ss_pred EEcCCCCCC-cccHHHHHhcCCCC------CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHH
Q 001041 464 LVSQEPVLF-TGSIKDNIAYGKDD------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1178)
Q Consensus 464 ~v~Q~~~l~-~~ti~~ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARa 536 (1178)
+++|+.-|| .-||++||.+|... ...+++..++..+++..+.+++| ..||||||||+||||+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP-----------~~LSGGqRQRvALARc 143 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP-----------GELSGGQRQRVALARC 143 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCc-----------cccCchHHHHHHHHHH
Confidence 999999999 58999999998532 23467788888899988888887 4799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
++++.+|++||||+|||||.-...+...+.++. ++.|+++|||+++.+.. +|+++++++|+|.++|+.+++.+.
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 999999999999999999998888877777665 46799999999998865 999999999999999999998875
No 124
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=7.3e-42 Score=370.19 Aligned_cols=219 Identities=42% Similarity=0.738 Sum_probs=200.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|+++.|+.. ..++|+|+||++++|++++|+||||||||||+++|.|+.+|.+|+|.++|.++...+....|+.+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 58999999999642 24699999999999999999999999999999999999999999999999998877777778899
Q ss_pred EEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCC
Q 001041 463 GLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1178)
Q Consensus 463 ~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~ 542 (1178)
+|++|+|++|..|++||+.++.+....+++.+.++..++.+.+..+|.|++|.+.+...+||||||||++||||++.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999998999999988655445667778888889988899999999999998889999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEec
Q 001041 543 ILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g 602 (1178)
++||||||++||+.+...+.+.++++.+++|+|++||+++.+..||+|++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 999999999999999999999999876668999999999988789999999999998754
No 125
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=4.9e-42 Score=356.52 Aligned_cols=205 Identities=34% Similarity=0.515 Sum_probs=171.0
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHH---HHh
Q 001041 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ---WIR 459 (1178)
Q Consensus 384 i~~~~~~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~---~~r 459 (1178)
++++|++..|.... ...+|+++||+|++||+++|+|||||||||||++|-|+..|++|.|.++|.|+..++.+ .+|
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 57899999996432 24699999999999999999999999999999999999999999999999999998854 344
Q ss_pred -cceEEEcCCCCCC-cccHHHHHhcCCC--CCCH----HHHHHHHHHhcHHHHHHhCCCCccchhc-CCCCCCChHHHHH
Q 001041 460 -KKIGLVSQEPVLF-TGSIKDNIAYGKD--DATT----EEIRVATELANAAKFIDKLPQGIDTLVG-EHGTQLSGGQKQR 530 (1178)
Q Consensus 460 -~~i~~v~Q~~~l~-~~ti~~ni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~-~~g~~lSgGqkqr 530 (1178)
++||||+|+..|. +.|++|||.++.. .... ++....++.. |+..... ....+||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~l-----------gl~~~~~~~~p~eLSGGqqQR 150 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVL-----------GLEDRLLKKKPSELSGGQQQR 150 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhc-----------CChhhhccCCchhcCHHHHHH
Confidence 6799999999887 5799999996321 1111 1222222222 4443333 5578999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhhccCEEEEEeCCEEE
Q 001041 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRNADMIAVIHRGKIV 599 (1178)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i~ 599 (1178)
+||||||+.+|+|++.||||++||.++.+.|.+.++++. .++|+|+|||+......|||++.|.+|++.
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 999999999999999999999999999999999998874 368999999999999999999999999954
No 126
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8e-42 Score=386.20 Aligned_cols=222 Identities=26% Similarity=0.476 Sum_probs=188.2
Q ss_pred ccEEEEeEEEECCCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCC------
Q 001041 382 GDIELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF------ 453 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~------ 453 (1178)
..|+++|++|+|+... +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.+.
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 3589999999997421 24699999999999999999999999999999999999999999999999998653
Q ss_pred ----------CHHHHhcceEEEcCCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcC
Q 001041 454 ----------QLQWIRKKIGLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGID-TLVGE 518 (1178)
Q Consensus 454 ----------~~~~~r~~i~~v~Q~~--~l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~-t~~~~ 518 (1178)
+...+|++|+||+|+| ++|+.|++|||.|+... .+.++... ...+.++.+ |++ ...++
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~ 172 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKK-----LAKFYLNKM--GLDDSYLER 172 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHH-----HHHHHHHHc--CCChhHhcC
Confidence 3456788999999998 78999999999986321 23332221 112344444 564 45778
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhh-ccCEEEEEeCC
Q 001041 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRG 596 (1178)
Q Consensus 519 ~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G 596 (1178)
.+.+||||||||++|||||+++|++|||||||++||+.+.+.+.+.+.++. +++|+|+|||+++.+. .||+|++|++|
T Consensus 173 ~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G 252 (320)
T PRK13631 173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKG 252 (320)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 889999999999999999999999999999999999999999999998764 5789999999999875 59999999999
Q ss_pred EEEEecChhHHhcC
Q 001041 597 KIVEKGTHSKLVED 610 (1178)
Q Consensus 597 ~i~~~g~~~~l~~~ 610 (1178)
++++.|+++++...
T Consensus 253 ~i~~~g~~~~~~~~ 266 (320)
T PRK13631 253 KILKTGTPYEIFTD 266 (320)
T ss_pred EEEEeCCHHHHhcC
Confidence 99999999998764
No 127
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.9e-42 Score=337.25 Aligned_cols=206 Identities=30% Similarity=0.498 Sum_probs=182.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHH---HHhc
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ---WIRK 460 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~---~~r~ 460 (1178)
|+|+||+.+|+.. +++|+|+||+|++||++.|+||||||||||+++|+++..|+.|+|.++|.|++.+... -+|+
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 7899999999864 6799999999999999999999999999999999999999999999999999887644 5899
Q ss_pred ceEEEcCCCCCC-cccHHHHHhcCCCC------CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHH
Q 001041 461 KIGLVSQEPVLF-TGSIKDNIAYGKDD------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1178)
Q Consensus 461 ~i~~v~Q~~~l~-~~ti~~ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~l 533 (1178)
+||+|+||-.|. .-||.||++|+..- .-.+++.++++.++|.+....+| ..|||||+||+||
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----------~~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-----------SQLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-----------cccCchHHHHHHH
Confidence 999999999876 67999999986431 11356677888888877777776 5799999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhcc-CEEEEEeCCEEEEec
Q 001041 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNA-DMIAVIHRGKIVEKG 602 (1178)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~-d~i~~l~~G~i~~~g 602 (1178)
|||+..+|++||-||||.+|||.+...|.+.+.++- .|.||++.||+.+.+..+ .|++.+++|+++...
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 999999999999999999999999999999988764 588999999999999874 689999999998643
No 128
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7e-42 Score=346.41 Aligned_cols=216 Identities=32% Similarity=0.561 Sum_probs=185.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCC---HHHHh
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ---LQWIR 459 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~---~~~~r 459 (1178)
.|+++|++.+||+ ++.+|+||||+|++||+++|+|+||||||||+++|.|+.+|++|+|.++|.++.... +..+|
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 4899999999984 467999999999999999999999999999999999999999999999999998877 55678
Q ss_pred cceEEEcCCCCCC-cccHHHHHhcCCCCC-----------CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH
Q 001041 460 KKIGLVSQEPVLF-TGSIKDNIAYGKDDA-----------TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1178)
Q Consensus 460 ~~i~~v~Q~~~l~-~~ti~~ni~~~~~~~-----------~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGq 527 (1178)
+++||++|++-|. ..|+-+|++.|.-.+ +.++...+++ .++.+ |+....-.+..+|||||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~------aLerv--gi~~~A~qra~~LSGGQ 152 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALD------ALERV--GILDKAYQRASTLSGGQ 152 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHH------HHHHc--CcHHHHHHHhccCCcch
Confidence 8999999999887 579999999885432 2333322222 22222 44444455667999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecCh
Q 001041 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTH 604 (1178)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~ 604 (1178)
+||++|||||+++|+|+|-|||+|+|||.+.+.+.+.+++.. .+.|+|+.-|.+++.+. ||||+-|++|+|+..|++
T Consensus 153 QQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~ 232 (258)
T COG3638 153 QQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPA 232 (258)
T ss_pred hHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCCh
Confidence 999999999999999999999999999999999999998765 47899999999999864 999999999999999999
Q ss_pred hHHh
Q 001041 605 SKLV 608 (1178)
Q Consensus 605 ~~l~ 608 (1178)
+|+-
T Consensus 233 ~el~ 236 (258)
T COG3638 233 SELT 236 (258)
T ss_pred hhhh
Confidence 9864
No 129
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=1.2e-41 Score=369.78 Aligned_cols=220 Identities=50% Similarity=0.832 Sum_probs=197.1
Q ss_pred CCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHH
Q 001041 379 DIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI 458 (1178)
Q Consensus 379 ~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~ 458 (1178)
...+.++++|++++|+++...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+....
T Consensus 7 ~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 86 (226)
T cd03248 7 HLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYL 86 (226)
T ss_pred CcCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHH
Confidence 34577999999999975433469999999999999999999999999999999999999999999999999887777777
Q ss_pred hcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhc
Q 001041 459 RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1178)
Q Consensus 459 r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~ 538 (1178)
+++++|++|+|.+|..|++||+.++.......++....+...+.+.++.+|.|+++.+.+...+||||||||++||||++
T Consensus 87 ~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~ 166 (226)
T cd03248 87 HSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALI 166 (226)
T ss_pred HhhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHh
Confidence 88999999999999999999999875544444445555556677889999989999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEE
Q 001041 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKI 598 (1178)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i 598 (1178)
++|+++||||||++||+++...+.+.++++.+++|+|++||+++.+..||+|++|++|++
T Consensus 167 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 167 RNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999987777899999999999988999999999974
No 130
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1.2e-41 Score=413.60 Aligned_cols=193 Identities=23% Similarity=0.371 Sum_probs=154.9
Q ss_pred EeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEE-----------ECCeecCCCCH
Q 001041 387 RDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL-----------IDGINLKEFQL 455 (1178)
Q Consensus 387 ~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~-----------i~g~~~~~~~~ 455 (1178)
++++++|+. ...+|++++ .+++||+++|+||||||||||+++|+|+++|++|+|. ++|.++.++..
T Consensus 77 ~~~~~~yg~--~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~ 153 (590)
T PRK13409 77 EEPVHRYGV--NGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFK 153 (590)
T ss_pred cCceEEecC--CceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHH
Confidence 358899963 236899999 8999999999999999999999999999999999997 88988765432
Q ss_pred H--HHhcc----eEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHH
Q 001041 456 Q--WIRKK----IGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1178)
Q Consensus 456 ~--~~r~~----i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkq 529 (1178)
. ..+.+ +.|++|.|.+|.+|++||+... ...+++.++++.. |++........+|||||||
T Consensus 154 ~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~---~~~~~~~~~l~~l-----------~l~~~~~~~~~~LSgGe~q 219 (590)
T PRK13409 154 KLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV---DERGKLDEVVERL-----------GLENILDRDISELSGGELQ 219 (590)
T ss_pred HHhccCcceeecccchhhhhhhhcchHHHHHHhh---hHHHHHHHHHHHc-----------CCchhhcCChhhCCHHHHH
Confidence 1 11123 4455667788889999999742 1122333333332 4444455666789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCC
Q 001041 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRG 596 (1178)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G 596 (1178)
|++||||++++|++||||||||+||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|+++
T Consensus 220 rv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 220 RVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999887668899999999999875 9999999753
No 131
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.4e-42 Score=359.72 Aligned_cols=217 Identities=32% Similarity=0.532 Sum_probs=184.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCe---ecCCCCHHHHh
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGI---NLKEFQLQWIR 459 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~---~~~~~~~~~~r 459 (1178)
.|+++|++..|+. .++++|||++|+.||.+|+.|||||||||||++|.|+..|++|+|.++|. |.++...+ .
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~--~ 76 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVR--D 76 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchh--h
Confidence 4788999999964 46899999999999999999999999999999999999999999999999 66664433 3
Q ss_pred cceEEEcCCCCCC-cccHHHHHhcCCCC--------CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHH
Q 001041 460 KKIGLVSQEPVLF-TGSIKDNIAYGKDD--------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1178)
Q Consensus 460 ~~i~~v~Q~~~l~-~~ti~~ni~~~~~~--------~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqr 530 (1178)
++||+|+|+.-+| ..||.+||.||.+- ....++.+.+++|+|...-+ ....+||||||||
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~-----------ryP~QLSGGQrQR 145 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLAD-----------RYPAQLSGGQRQR 145 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhh-----------cCchhcChHHHHH
Confidence 5799999999888 69999999999721 12345555566666554433 3457899999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchh-hccCEEEEEeCCEEEEecChhHH
Q 001041 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~-~~~d~i~~l~~G~i~~~g~~~~l 607 (1178)
+||||||..+|++||||||++|||++..+.+++-+++... +.|+++|||+.+.. +.||||++|++|+|.+.|+++|+
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 9999999999999999999999999999888887776643 68999999999986 55999999999999999999999
Q ss_pred hcCCCchH
Q 001041 608 VEDPEGAY 615 (1178)
Q Consensus 608 ~~~~~~~~ 615 (1178)
...++..|
T Consensus 226 ~~~P~s~f 233 (345)
T COG1118 226 YDHPASRF 233 (345)
T ss_pred hcCCCccc
Confidence 88766544
No 132
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=1.1e-39 Score=363.57 Aligned_cols=208 Identities=29% Similarity=0.518 Sum_probs=176.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCH-HHHhcc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRKK 461 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~-~~~r~~ 461 (1178)
.+++++++..|| ...+++||||++++||+.|+.|+||+|||||+++|.|+|+|++|+|.+||++++--++ +.+|..
T Consensus 4 ~l~~~~itK~f~---~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G 80 (501)
T COG3845 4 ALEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80 (501)
T ss_pred eEEEeccEEEcC---CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence 489999999997 3468999999999999999999999999999999999999999999999999986655 567889
Q ss_pred eEEEcCCCCCC-cccHHHHHhcCCCCC-----CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHH
Q 001041 462 IGLVSQEPVLF-TGSIKDNIAYGKDDA-----TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1178)
Q Consensus 462 i~~v~Q~~~l~-~~ti~~ni~~~~~~~-----~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lAR 535 (1178)
||+|.|++.|+ +-|+.|||.+|.+.. +..+.++ .+.+..+++ |++-...+....||-|||||+.|-+
T Consensus 81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~-----~i~~l~~~y--Gl~vdp~~~V~dLsVG~qQRVEIlK 153 (501)
T COG3845 81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARA-----RIKELSERY--GLPVDPDAKVADLSVGEQQRVEILK 153 (501)
T ss_pred CcEEeeccccccccchhhhhhhcCccccccccCHHHHHH-----HHHHHHHHh--CCCCCccceeecCCcchhHHHHHHH
Confidence 99999999998 579999999998642 2222211 122222332 5555556666789999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEE
Q 001041 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVE 600 (1178)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~ 600 (1178)
|||++|++||||||||-|-|.....+++.++.+. .|+|+|+|||+++.+.. |||+-||.+|+++.
T Consensus 154 aLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvg 220 (501)
T COG3845 154 ALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVG 220 (501)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEe
Confidence 9999999999999999999998888888888775 58999999999999876 99999999999763
No 133
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=2.7e-41 Score=367.47 Aligned_cols=210 Identities=38% Similarity=0.610 Sum_probs=177.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC-----CCCCCcEEECCeecCCCC--HH
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY-----DPQAGEVLIDGINLKEFQ--LQ 456 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~-----~~~~G~i~i~g~~~~~~~--~~ 456 (1178)
|+++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|++ +|.+|+|.++|.++...+ ..
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 478999999964 36999999999999999999999999999999999999 999999999999988776 56
Q ss_pred HHhcceEEEcCCCCCCcccHHHHHhcCCCCC---C----HHHHHHHHHHhcHHHHHHhCCCCccchhcCC--CCCCChHH
Q 001041 457 WIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA---T----TEEIRVATELANAAKFIDKLPQGIDTLVGEH--GTQLSGGQ 527 (1178)
Q Consensus 457 ~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~---~----~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~--g~~lSgGq 527 (1178)
.+|++++|++|++.+|..|++||+.++.... . ++++.++++.. |++...... +.+|||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~~LSgG~ 146 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKA-----------ALWDEVKDRLHALGLSGGQ 146 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHc-----------CCChHHhccCCcccCCHHH
Confidence 6788999999999988889999998753211 1 12223333333 333333333 47899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhH
Q 001041 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSK 606 (1178)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~ 606 (1178)
|||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 147 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 147 QQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 9999999999999999999999999999999999999998765589999999999876 499999999999999998765
Q ss_pred H
Q 001041 607 L 607 (1178)
Q Consensus 607 l 607 (1178)
+
T Consensus 227 ~ 227 (227)
T cd03260 227 I 227 (227)
T ss_pred C
Confidence 3
No 134
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=1.8e-37 Score=361.41 Aligned_cols=467 Identities=16% Similarity=0.155 Sum_probs=321.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcc------HHHHHHHhHHHHHHHHHHHH
Q 001041 108 KFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTG------EVVGRMSGDTVLIQDAMGEK 181 (1178)
Q Consensus 108 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G------~i~~r~s~D~~~i~~~~~~~ 181 (1178)
.|..++.+...+...+.+....+..+.-.-+-..++++-++....++-. ..| ..=+|+..|+..+.+...+.
T Consensus 91 ~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~--~~~~~~~~dNpDQRi~eDi~~~t~~t~~l 168 (604)
T COG4178 91 VFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLA--QAGGIGLIDNPDQRIQEDIRNFTETTLDL 168 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH--hcccccCCCChHHhHHHHHHHHHhhHHHH
Confidence 3333444444444445554444444444444455566655555333221 333 23379999999988877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-----------HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 182 VGKFLQLMATFLGGFLIAFIKG-----------WL----LTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVV 246 (1178)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~-----------~~----l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (1178)
...++..+.+++....+..-.+ +. +..++++.+++-.++..++++...+......+..+.....+
T Consensus 169 ~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~L 248 (604)
T COG4178 169 SFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSL 248 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHH
Confidence 7777777666555444433111 11 11122222333333444555555555555555556666777
Q ss_pred HHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Q 001041 247 EQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNV 326 (1178)
Q Consensus 247 ~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 326 (1178)
...-.+...|-.|+.|+.+.++..+..........+...+..-...+......++.++.+..++.....|.++.|.+...
T Consensus 249 vrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~lmqa 328 (604)
T COG4178 249 VRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLMQA 328 (604)
T ss_pred HHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHHHHH
Confidence 77778889999999999888777765554443322221111111111111222222333344455567788898888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-----CCCcCCCCCcc--cCCCcccEEEEeEEEECCCCCCC
Q 001041 327 MVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKP-----EIDAYDTKGKI--LDDIRGDIELRDVYFSYPARPNE 399 (1178)
Q Consensus 327 ~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~-----~~~~~~~~~~~--~~~~~~~i~~~~~~~~y~~~~~~ 399 (1178)
...+.+...+++++......+..-++...|+.++....+ +.......... ....+..|+++|++..-|+. .
T Consensus 329 ~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~--~ 406 (604)
T COG4178 329 VGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG--Q 406 (604)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCC--C
Confidence 777777777888888888888888888888877653221 10111100000 01114679999999998753 4
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHH
Q 001041 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDN 479 (1178)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~n 479 (1178)
+.+++++|.+++||.+.|.|+||||||||+++|.|+.|--+|+|.... -..+-|+||.|.+-.||+||-
T Consensus 407 ~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY~p~GtLre~ 475 (604)
T COG4178 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYLPQGTLREA 475 (604)
T ss_pred eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCCCCCccHHHH
Confidence 799999999999999999999999999999999999999999997752 136999999999999999999
Q ss_pred HhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHh
Q 001041 480 IAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557 (1178)
Q Consensus 480 i~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~ 557 (1178)
|+++... .+|+++.+++.+|+|.+.++++.+- .+-..-||+|||||+++||.++++|++++|||+|||||+++
T Consensus 476 l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~-----~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~ 550 (604)
T COG4178 476 LCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEE-----DRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEET 550 (604)
T ss_pred HhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhcc-----CcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHH
Confidence 9998765 7899999999999999999887432 22345799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEe
Q 001041 558 EKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIH 594 (1178)
Q Consensus 558 ~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~ 594 (1178)
+..+.+.+++.+.+.|+|-|.||.......++.+-++
T Consensus 551 e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 551 EDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred HHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence 9999999999999999999999998887777666554
No 135
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.5e-41 Score=368.45 Aligned_cols=218 Identities=31% Similarity=0.473 Sum_probs=186.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC---CCCCcEEECCeecCCCCHHHHh
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD---PQAGEVLIDGINLKEFQLQWIR 459 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~---~~~G~i~i~g~~~~~~~~~~~r 459 (1178)
.|+++|+++.|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.+.+....|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 3789999999963 469999999999999999999999999999999999984 6899999999999888877888
Q ss_pred cceEEEcCCCCCCcccHHHHHhcCCCCC--------CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHH
Q 001041 460 KKIGLVSQEPVLFTGSIKDNIAYGKDDA--------TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1178)
Q Consensus 460 ~~i~~v~Q~~~l~~~ti~~ni~~~~~~~--------~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri 531 (1178)
++++|+||+|.+|..|++||+.++.... .++++...++.+++.+++ .+...+.+.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEV-------KDKLKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhh-------hHHhcCCcccCCHHHHHHH
Confidence 8999999999999999999998753110 111233333333332222 2345667789999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcC
Q 001041 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 532 ~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
+||||++++|+++||||||++||+.+...+.+.+.++.+++|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999999988777899999999999886 5999999999999999999998764
No 136
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=3.4e-41 Score=383.95 Aligned_cols=207 Identities=33% Similarity=0.538 Sum_probs=179.2
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHH----hcceEEEcCCCCCCc-
Q 001041 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI----RKKIGLVSQEPVLFT- 473 (1178)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~----r~~i~~v~Q~~~l~~- 473 (1178)
+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..++ |++++||+|++++|+
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 468999999999999999999999999999999999999999999999999999988877 789999999999996
Q ss_pred ccHHHHHhcCCCC--CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 001041 474 GSIKDNIAYGKDD--ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLD 547 (1178)
Q Consensus 474 ~ti~~ni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlD 547 (1178)
.||+|||.|+... .+. +++.++++.+ |++...++...+||||||||++|||||+++|+|||||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~v-----------gL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLV-----------GLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----------CCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 6999999986432 112 2222333332 5555667777899999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcCCCchHH
Q 001041 548 EATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616 (1178)
Q Consensus 548 e~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 616 (1178)
||||+||+.+.+.+++.+.++. .++|+|+|||+++.+. .||+|++|++|++++.|++++++.++...|.
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~~ 226 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYV 226 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHHH
Confidence 9999999999999999998764 3789999999999865 5999999999999999999999887554443
No 137
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-40 Score=364.74 Aligned_cols=217 Identities=35% Similarity=0.567 Sum_probs=182.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCH---HHHhc
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL---QWIRK 460 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~---~~~r~ 460 (1178)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 468999999963 469999999999999999999999999999999999999999999999999887664 56788
Q ss_pred ceEEEcCCCCCCcc-cHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHH
Q 001041 461 KIGLVSQEPVLFTG-SIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1178)
Q Consensus 461 ~i~~v~Q~~~l~~~-ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARa 536 (1178)
.++|++|++.+|.. |++||+.++.. ..+.++.... +.+.++.+ |+.........+||||||||++||||
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~ia~a 150 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREI-----VLEKLEAV--GLRGAEDLYPAELSGGMKKRVALARA 150 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHH-----HHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHH
Confidence 99999999998875 99999987532 1222222211 11223332 44444555667899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
++.+|+++||||||++||+.+.+.+.+.++++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 151 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 227 (235)
T cd03261 151 LALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227 (235)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCC
Confidence 9999999999999999999999999999988753 7899999999998865 999999999999999999988754
No 138
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.1e-41 Score=373.36 Aligned_cols=217 Identities=32% Similarity=0.542 Sum_probs=186.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++++|+.....++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999743224699999999999999999999999999999999999999999999999999888888888999
Q ss_pred EEEcCCCC--CCcccHHHHHhcCCCC--CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHH
Q 001041 463 GLVSQEPV--LFTGSIKDNIAYGKDD--ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1178)
Q Consensus 463 ~~v~Q~~~--l~~~ti~~ni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lA 534 (1178)
+|++|+|. ++..||+|||.|+... .+. +++.++++.. |++........+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~-----------gL~~~~~~~~~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELV-----------GMQDFKEREPARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHC-----------CCHhHhhCCcccCCHHHHHHHHHH
Confidence 99999984 5678999999986422 222 2233333333 444445556679999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcC
Q 001041 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
||++.+|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999999999999988753 7899999999999888999999999999999999988764
No 139
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.4e-41 Score=382.57 Aligned_cols=218 Identities=29% Similarity=0.512 Sum_probs=185.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++++|+. +.++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.+.+.. +++|
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI 78 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4889999999942 24699999999999999999999999999999999999999999999999999887765 3689
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCC--CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHH
Q 001041 463 GLVSQEPVLFT-GSIKDNIAYGKDD--ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1178)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~ni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lAR 535 (1178)
+||+|++.+|. .||+|||.|+... .+. +++.++++.. |++........+||||||||++|||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~-----------gL~~~~~~~~~~LSgGq~QRvalAR 147 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARIL-----------ELEPLLDRKPRELSGGQRQRVAMGR 147 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHc-----------CChhHhhCChhhCCHHHHHHHHHHH
Confidence 99999999994 7999999987431 122 2233333333 4444455666799999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcCCC
Q 001041 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPE 612 (1178)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~ 612 (1178)
||+++|++||||||||+||+.+...+.+.++++.+ +.|+|+|||+++.+. .||+|++|++|++++.|+++++..++.
T Consensus 148 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~ 227 (356)
T PRK11650 148 AIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPA 227 (356)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCc
Confidence 99999999999999999999999999999988754 689999999999775 599999999999999999999988755
Q ss_pred chH
Q 001041 613 GAY 615 (1178)
Q Consensus 613 ~~~ 615 (1178)
..|
T Consensus 228 ~~~ 230 (356)
T PRK11650 228 STF 230 (356)
T ss_pred cHH
Confidence 444
No 140
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.5e-41 Score=381.67 Aligned_cols=217 Identities=30% Similarity=0.545 Sum_probs=186.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+.++. +++|
T Consensus 6 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 80 (351)
T PRK11432 6 FVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDI 80 (351)
T ss_pred EEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 5899999999963 4689999999999999999999999999999999999999999999999999877654 4689
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCC--CCHH----HHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHH
Q 001041 463 GLVSQEPVLFT-GSIKDNIAYGKDD--ATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1178)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~----~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lAR 535 (1178)
+||+|++.+|. .|++|||.|+... .+.+ ++.++++.. |+..........||||||||++|||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~-----------gl~~~~~r~~~~LSgGq~QRVaLAR 149 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELV-----------DLAGFEDRYVDQISGGQQQRVALAR 149 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHc-----------CCchhhcCChhhCCHHHHHHHHHHH
Confidence 99999999995 6999999987431 1222 233333333 3444455667889999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcCCC
Q 001041 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPE 612 (1178)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~ 612 (1178)
||+++|++||||||||+||+.+...+.+.++++.+ +.|+|+|||+.+.+. .||+|++|++|+|++.|+++++.+++.
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~ 229 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPA 229 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999999999999988754 689999999999875 599999999999999999999988765
Q ss_pred chH
Q 001041 613 GAY 615 (1178)
Q Consensus 613 ~~~ 615 (1178)
..|
T Consensus 230 ~~~ 232 (351)
T PRK11432 230 SRF 232 (351)
T ss_pred chH
Confidence 443
No 141
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.9e-40 Score=375.83 Aligned_cols=209 Identities=31% Similarity=0.488 Sum_probs=174.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHH-Hhcc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW-IRKK 461 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~-~r~~ 461 (1178)
-++++|++.+|+. .++|+|+||++.+||+++++|.||||||||+|.|.|.|+|++|+|.+||....-.++.+ ....
T Consensus 8 ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 8 LLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred eeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence 4789999999973 57999999999999999999999999999999999999999999999999998777665 4567
Q ss_pred eEEEcCCCCCC-cccHHHHHhcCCCCCC------HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHH
Q 001041 462 IGLVSQEPVLF-TGSIKDNIAYGKDDAT------TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1178)
Q Consensus 462 i~~v~Q~~~l~-~~ti~~ni~~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lA 534 (1178)
|+.|.|++-|+ +-||.|||-+|.+... ..+..+..+ +.+..+ |++........+||+||||.|+||
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~-----~~l~~l--g~~~~~~~~v~~LsiaqrQ~VeIA 157 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRAR-----ELLARL--GLDIDPDTLVGDLSIAQRQMVEIA 157 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHH-----HHHHHc--CCCCChhhhhhhCCHHHHHHHHHH
Confidence 99999999988 6899999988875432 233333222 223333 221113334457999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEe
Q 001041 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEK 601 (1178)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~ 601 (1178)
||+..+++|+|||||||+|+.+..+.+++.++++. +|.++|+||||++.+.. ||||.||.||+.+..
T Consensus 158 rAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~ 226 (500)
T COG1129 158 RALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGT 226 (500)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeee
Confidence 99999999999999999999998888889998876 68999999999999865 999999999998753
No 142
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.8e-40 Score=355.38 Aligned_cols=204 Identities=34% Similarity=0.600 Sum_probs=180.5
Q ss_pred cccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhc
Q 001041 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRK 460 (1178)
Q Consensus 381 ~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~ 460 (1178)
.+.++++|++++|+.. ..++++|+||++++||+++|+|++|||||||+++|+|+++|.+|+|.++|.++...+...+|+
T Consensus 4 ~~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (207)
T cd03369 4 HGEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRS 82 (207)
T ss_pred CCeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHh
Confidence 4579999999999743 246999999999999999999999999999999999999999999999999998888888888
Q ss_pred ceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccC
Q 001041 461 KIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1178)
Q Consensus 461 ~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~ 540 (1178)
.|+|++|+|.+|++|++||+.+..+ .+++++.++++ +++....|||||+||++||||++.+
T Consensus 83 ~i~~v~q~~~~~~~tv~~~l~~~~~-~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~ 143 (207)
T cd03369 83 SLTIIPQDPTLFSGTIRSNLDPFDE-YSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKR 143 (207)
T ss_pred hEEEEecCCcccCccHHHHhcccCC-CCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhC
Confidence 9999999999999999999986432 33333322221 3456789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecCh
Q 001041 541 PRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTH 604 (1178)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 604 (1178)
|+++||||||++||+.+.+.+.+.++++.+++|+|++||+++.+..||++++|++|++++.|++
T Consensus 144 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 144 PRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 9999999999999999999999999987778999999999999888999999999999988764
No 143
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-40 Score=372.19 Aligned_cols=220 Identities=33% Similarity=0.583 Sum_probs=184.3
Q ss_pred EEEEeEEEECCCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCC--HHHHh
Q 001041 384 IELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ--LQWIR 459 (1178)
Q Consensus 384 i~~~~~~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~--~~~~r 459 (1178)
|+++|++++|+... .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999997421 146999999999999999999999999999999999999999999999999997754 45678
Q ss_pred cceEEEcCCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCcc--chhcCCCCCCChHHHHHHHH
Q 001041 460 KKIGLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGID--TLVGEHGTQLSGGQKQRIAI 533 (1178)
Q Consensus 460 ~~i~~v~Q~~--~l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~--t~~~~~g~~lSgGqkqri~l 533 (1178)
.+|+||||+| .+|+.|++|||.|+... .+.++..+.. .+.++.+ |++ +........||||||||++|
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--gL~~~~~~~~~~~~LSgGq~qrv~i 155 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRV-----KRAMNIV--GLDYEDYKDKSPFELSGGQKRRVAI 155 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHH-----HHHHHHc--CCCchhhccCCcccCCHHHHHHHHH
Confidence 8999999998 67889999999976321 2333222111 1222222 443 44667778999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcC
Q 001041 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
||||+.+|++|||||||++||+.+.+.+.+.++++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 156 AraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 235 (287)
T PRK13637 156 AGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKE 235 (287)
T ss_pred HHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999988753 789999999999885 5999999999999999999998654
No 144
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-40 Score=380.52 Aligned_cols=225 Identities=34% Similarity=0.564 Sum_probs=188.0
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHH---Hh
Q 001041 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW---IR 459 (1178)
Q Consensus 384 i~~~~~~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~---~r 459 (1178)
|+++|++++|+... +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997311 356999999999999999999999999999999999999999999999999998877654 47
Q ss_pred cceEEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHH
Q 001041 460 KKIGLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1178)
Q Consensus 460 ~~i~~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARa 536 (1178)
++|+|++|++.+|. .|++||+.++... .+.++..+ .+.+.++.+ |++........+||||||||++||||
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~LSgGq~qRv~lAra 154 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKA-----RVTELLELV--GLSDKADRYPAQLSGGQKQRVAIARA 154 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHH
Confidence 88999999999885 7999999875321 22222211 122334433 55555666778999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcCCCc
Q 001041 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEG 613 (1178)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~ 613 (1178)
|+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...+..
T Consensus 155 L~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~ 234 (343)
T PRK11153 155 LASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHPKH 234 (343)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCc
Confidence 9999999999999999999999999999988753 7899999999999875 999999999999999999999876443
Q ss_pred hH
Q 001041 614 AY 615 (1178)
Q Consensus 614 ~~ 615 (1178)
.+
T Consensus 235 ~~ 236 (343)
T PRK11153 235 PL 236 (343)
T ss_pred HH
Confidence 33
No 145
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-40 Score=362.18 Aligned_cols=221 Identities=34% Similarity=0.631 Sum_probs=187.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4889999999963 3699999999999999999999999999999999999999999999999999887777888899
Q ss_pred EEEcCCCCCCcccHHHHHhcCCCCCC--HHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 463 GLVSQEPVLFTGSIKDNIAYGKDDAT--TEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 463 ~~v~Q~~~l~~~ti~~ni~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~g~~-t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
+|++|+|.+|..|++||+.++..... .+++... ++.+ |++ ........+||||||||++||||+++
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~---------l~~~--~l~~~~~~~~~~~LS~G~~qrl~la~al~~ 148 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYY---------LSIV--GLNKEYATRDVKNLSGGEAQRVSIARTLAN 148 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHH---------HHHc--CCCHHHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999987532111 1222222 3332 333 23455678899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcCCCchHH
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 616 (1178)
+|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...+...+.
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~ 228 (241)
T PRK14250 149 NPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVT 228 (241)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHH
Confidence 9999999999999999999999999988753 7899999999999865 999999999999999999998865443444
Q ss_pred H
Q 001041 617 Q 617 (1178)
Q Consensus 617 ~ 617 (1178)
.
T Consensus 229 ~ 229 (241)
T PRK14250 229 K 229 (241)
T ss_pred H
Confidence 3
No 146
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=1.1e-40 Score=381.14 Aligned_cols=221 Identities=30% Similarity=0.492 Sum_probs=188.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|.|+.+|++|+|.+||.++.+.++. ++.+
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999963 4589999999999999999999999999999999999999999999999999887764 5689
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 463 GLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
+||+|++.+|. .|++||+.|+... .+.++.. ..+.+.++.+ |++........+||||||||++|||||++
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~-----~~~~~~l~~l--~L~~~~~~~~~~LSgGq~QRvaLARaL~~ 151 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVA-----ERVAELLDLV--GLPGSERKYPGQLSGGQQQRVALARALAT 151 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCCchhhCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999995 7999999987432 1222211 1223334444 56666677888999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcCCCchH
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 615 (1178)
+|+++|||||||+||+.+.+.+.+.++++.+ +.|+|+|||+++.+. .||+|++|++|++++.|+++++.+++...|
T Consensus 152 ~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~~~~ 230 (353)
T TIGR03265 152 SPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPATPF 230 (353)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHH
Confidence 9999999999999999999999999988754 689999999999875 599999999999999999999998765444
No 147
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-40 Score=371.70 Aligned_cols=220 Identities=28% Similarity=0.533 Sum_probs=183.5
Q ss_pred EEEEeEEEECCCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCC----CCHHH
Q 001041 384 IELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE----FQLQW 457 (1178)
Q Consensus 384 i~~~~~~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~----~~~~~ 457 (1178)
|+++|++|+|+... .+++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997421 1359999999999999999999999999999999999999999999999999863 34567
Q ss_pred HhcceEEEcCCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHHHHHH
Q 001041 458 IRKKIGLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRIA 532 (1178)
Q Consensus 458 ~r~~i~~v~Q~~--~l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~-t~~~~~g~~lSgGqkqri~ 532 (1178)
+|++++||+|+| .+|..|+.||+.|+... .+.++.... +.+.++.+ |+. ........+||||||||++
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~L~~~~~~~~~~~LSgGqkqrva 154 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKI-----AAEKLEMV--GLADEFWEKSPFELSGGQMRRVA 154 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhccCCcccCCHHHHHHHH
Confidence 788999999998 78899999999986432 222222211 11223332 443 2345677899999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcC
Q 001041 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 533 lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
|||||+.+|+++||||||++||+.+.+.+.+.++++. +++|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 155 iA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 234 (288)
T PRK13643 155 IAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQE 234 (288)
T ss_pred HHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 9999999999999999999999999999999998765 4789999999999885 5999999999999999999998654
No 148
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=1.6e-40 Score=363.87 Aligned_cols=222 Identities=28% Similarity=0.509 Sum_probs=185.1
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHH-hcce
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI-RKKI 462 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~-r~~i 462 (1178)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... +.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 468999999963 469999999999999999999999999999999999999999999999999988776554 5679
Q ss_pred EEEcCCCCCCcc-cHHHHHhcCCCCCCHHHH-------HHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHH
Q 001041 463 GLVSQEPVLFTG-SIKDNIAYGKDDATTEEI-------RVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1178)
Q Consensus 463 ~~v~Q~~~l~~~-ti~~ni~~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lA 534 (1178)
+|+||++.+|.+ |++||+.++........+ ........+.+.++.+ |++.........||||||||++||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 155 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV--GLADLADRPAGELSYGQQRRLEIA 155 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHc--CccchhhCChhhCCHHHHHHHHHH
Confidence 999999998875 999999876422110000 0001111233445554 666667778889999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
||++.+|+++||||||++||+.+.+.+.+.++++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..+
T Consensus 156 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 233 (236)
T cd03219 156 RALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNN 233 (236)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhccC
Confidence 99999999999999999999999999999998865 57899999999999865 999999999999999999988653
No 149
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-40 Score=364.36 Aligned_cols=223 Identities=31% Similarity=0.465 Sum_probs=185.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCcEEECCeecCC--CCH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKE--FQL 455 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~--~~~ 455 (1178)
.++++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++| ++|+|.++|.++.. .+.
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 7 IIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred eEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 5899999999963 3599999999999999999999999999999999999987 48999999998753 344
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCC---CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 001041 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD---ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1178)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~---~~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqk 528 (1178)
..+|++++|++|++.+|..|++|||.++... ... +++..+++.+++.+. +.........+||||||
T Consensus 84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LSgG~~ 156 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNE-------VKDKLNTNALSLSGGQQ 156 (254)
T ss_pred HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchh-------hHHHHhCCcccCCHHHH
Confidence 5678899999999999999999999876321 111 223333333333211 12234456788999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHH
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1178)
||++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 236 (254)
T PRK14273 157 QRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988777899999999999755 999999999999999999999
Q ss_pred hcCCCchH
Q 001041 608 VEDPEGAY 615 (1178)
Q Consensus 608 ~~~~~~~~ 615 (1178)
.+++...|
T Consensus 237 ~~~~~~~~ 244 (254)
T PRK14273 237 FFNPKNTK 244 (254)
T ss_pred HhCCCChH
Confidence 86644433
No 150
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-40 Score=365.51 Aligned_cols=219 Identities=32% Similarity=0.524 Sum_probs=184.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCCcEEECCeecCC--CCH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--FQL 455 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-----~~~G~i~i~g~~~~~--~~~ 455 (1178)
.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 6 KMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 4899999999963 369999999999999999999999999999999999874 589999999999865 345
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCC--C-C----HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 001041 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--A-T----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1178)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~-~----~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqk 528 (1178)
..+|++++|++|++.+|..|++||+.++... . . .+++..+++.+++.+.+ ....+....+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgGq~ 155 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEV-------KDRLHESALGLSGGQQ 155 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhh-------hHHhhCCcccCCHHHH
Confidence 5678899999999999989999999875311 1 1 12333334443332221 2345667789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHH
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 607 (1178)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998866789999999999985 4999999999999999999998
Q ss_pred hcCC
Q 001041 608 VEDP 611 (1178)
Q Consensus 608 ~~~~ 611 (1178)
.+.+
T Consensus 236 ~~~~ 239 (253)
T PRK14242 236 FTRP 239 (253)
T ss_pred HcCC
Confidence 7653
No 151
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-40 Score=364.34 Aligned_cols=221 Identities=33% Similarity=0.530 Sum_probs=186.3
Q ss_pred cccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCCcEEECCeecCC--C
Q 001041 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--F 453 (1178)
Q Consensus 381 ~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-----~~~G~i~i~g~~~~~--~ 453 (1178)
.+.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .
T Consensus 11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 356999999999963 369999999999999999999999999999999999986 479999999999853 4
Q ss_pred CHHHHhcceEEEcCCCCCCcccHHHHHhcCCCC---CCHH----HHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChH
Q 001041 454 QLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD---ATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1178)
Q Consensus 454 ~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~---~~~~----~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgG 526 (1178)
+...+|++++|++|+|.+|..|++||+.++... .+.+ +++++++..++.+ ++.....+...+||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G 160 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWN-------EVKDKLHQSGYSLSGG 160 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCCh-------hhHHHHhcCCCCCCHH
Confidence 556778899999999999999999999875321 2222 2333333333211 2234566778899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChh
Q 001041 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHS 605 (1178)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~ 605 (1178)
||||++||||++++|+++||||||++||+.+.+.+.+.++++.+++|+|++||+++.+. .||++++|++|++++.|+++
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 240 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTD 240 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999998877789999999999886 49999999999999999999
Q ss_pred HHhcCC
Q 001041 606 KLVEDP 611 (1178)
Q Consensus 606 ~l~~~~ 611 (1178)
++...+
T Consensus 241 ~~~~~~ 246 (260)
T PRK10744 241 TIFTKP 246 (260)
T ss_pred HHHhCC
Confidence 987653
No 152
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-40 Score=370.23 Aligned_cols=221 Identities=31% Similarity=0.553 Sum_probs=186.2
Q ss_pred cEEEEeEEEECCCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCC----CHH
Q 001041 383 DIELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF----QLQ 456 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~----~~~ 456 (1178)
.++++|++++|+... .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||+++... +..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996422 24699999999999999999999999999999999999999999999999998653 345
Q ss_pred HHhcceEEEcCCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccc-hhcCCCCCCChHHHHHH
Q 001041 457 WIRKKIGLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSGGQKQRI 531 (1178)
Q Consensus 457 ~~r~~i~~v~Q~~--~l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t-~~~~~g~~lSgGqkqri 531 (1178)
.+|++|+||||+| .+|..|++|||.|+... .+.++.... +.+.++.+ |+++ .......+||||||||+
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv 154 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY-----AHRLLMDL--GFSRDVMSQSPFQMSGGQMRKI 154 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHH
Confidence 6788999999998 68888999999986321 233322221 22334443 6763 45677889999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHh
Q 001041 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLV 608 (1178)
Q Consensus 532 ~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 608 (1178)
+|||||+.+|+++||||||++||+.+...+.+.++++. .++|+|+|||+++.+. .||+|++|++|++++.|+++++.
T Consensus 155 ~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 155 AIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELF 234 (286)
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999998874 3789999999999875 59999999999999999999887
Q ss_pred cC
Q 001041 609 ED 610 (1178)
Q Consensus 609 ~~ 610 (1178)
+.
T Consensus 235 ~~ 236 (286)
T PRK13646 235 KD 236 (286)
T ss_pred hC
Confidence 64
No 153
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=4.3e-40 Score=362.44 Aligned_cols=218 Identities=32% Similarity=0.511 Sum_probs=182.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC-----CCcEEECCeecCCC--CHH
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ-----AGEVLIDGINLKEF--QLQ 456 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~-----~G~i~i~g~~~~~~--~~~ 456 (1178)
++++|++++|++ .++++|+||+|++||+++|+|+||||||||+++|.|+++|+ +|+|.++|.++... +..
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 789999999963 35999999999999999999999999999999999999998 99999999998763 355
Q ss_pred HHhcceEEEcCCCCCCcccHHHHHhcCCCC---CCHH----HHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHH
Q 001041 457 WIRKKIGLVSQEPVLFTGSIKDNIAYGKDD---ATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1178)
Q Consensus 457 ~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~---~~~~----~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkq 529 (1178)
..|++++|+||++.+|..|++||+.++... .+.+ ++..+++..++.+.+ .........+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEV-------KDRLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcch-------hhHhhCCcccCCHHHHH
Confidence 667899999999999999999999875321 1122 222222222222111 14456677899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHh
Q 001041 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLV 608 (1178)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 608 (1178)
|++||||++.+|+++||||||++||+.+...+.+.++++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++.
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998776789999999999886 49999999999999999999987
Q ss_pred cCC
Q 001041 609 EDP 611 (1178)
Q Consensus 609 ~~~ 611 (1178)
.++
T Consensus 232 ~~~ 234 (247)
T TIGR00972 232 TNP 234 (247)
T ss_pred hCC
Confidence 653
No 154
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-40 Score=365.46 Aligned_cols=220 Identities=33% Similarity=0.513 Sum_probs=185.0
Q ss_pred cccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCcEEECCeecCC--C
Q 001041 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKE--F 453 (1178)
Q Consensus 381 ~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~--~ 453 (1178)
.+.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|.|+++| ++|+|.++|.++.. .
T Consensus 17 ~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 17 EIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 457999999999963 4699999999999999999999999999999999999975 89999999999864 3
Q ss_pred CHHHHhcceEEEcCCCCCCcccHHHHHhcCCCC--C--CH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCCh
Q 001041 454 QLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--A--TT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSG 525 (1178)
Q Consensus 454 ~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~--~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSg 525 (1178)
+...+|++++|++|+|.+|..|++||+.++... . .. +++.++++..++.+.+ .........+|||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSg 166 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEV-------KDRLHEPGTGLSG 166 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhh-------hHHhhCCcccCCH
Confidence 456678899999999999988999999875310 0 11 2233333333332211 2345667789999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecCh
Q 001041 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTH 604 (1178)
Q Consensus 526 Gqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~ 604 (1178)
|||||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~ 246 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDT 246 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999988777899999999999855 899999999999999999
Q ss_pred hHHhcC
Q 001041 605 SKLVED 610 (1178)
Q Consensus 605 ~~l~~~ 610 (1178)
+++..+
T Consensus 247 ~~~~~~ 252 (267)
T PRK14235 247 EKMFTN 252 (267)
T ss_pred HHHHhC
Confidence 998754
No 155
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.4e-40 Score=359.76 Aligned_cols=216 Identities=34% Similarity=0.541 Sum_probs=181.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++++
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i 76 (239)
T cd03296 2 SIEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNV 76 (239)
T ss_pred EEEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccce
Confidence 3789999999964 469999999999999999999999999999999999999999999999999876543 25689
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCCC------CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHH
Q 001041 463 GLVSQEPVLFT-GSIKDNIAYGKDDA------TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1178)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~ni~~~~~~~------~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lAR 535 (1178)
+|++|+|.+|. .|++||+.++.... +.++..+ .+.+.++.+ |++........+||||||||++|||
T Consensus 77 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~ 149 (239)
T cd03296 77 GFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRA-----KVHELLKLV--QLDWLADRYPAQLSGGQRQRVALAR 149 (239)
T ss_pred EEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHH-----HHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHH
Confidence 99999998885 69999999764211 1111111 122333333 4555556667889999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
|++.+|++|||||||++||+++.+.+.+.++++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 150 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (239)
T cd03296 150 ALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227 (239)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcC
Confidence 99999999999999999999999999999988753 6899999999998754 999999999999999999998754
No 156
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-40 Score=369.40 Aligned_cols=220 Identities=31% Similarity=0.552 Sum_probs=183.0
Q ss_pred EEEEeEEEECCCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCC----CCHHH
Q 001041 384 IELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE----FQLQW 457 (1178)
Q Consensus 384 i~~~~~~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~----~~~~~ 457 (1178)
++++|++++|+... ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||+++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996432 1469999999999999999999999999999999999999999999999999863 34556
Q ss_pred HhcceEEEcCCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHHHHHH
Q 001041 458 IRKKIGLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRIA 532 (1178)
Q Consensus 458 ~r~~i~~v~Q~~--~l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~-t~~~~~g~~lSgGqkqri~ 532 (1178)
.|++|+||+|+| .+|+.|++|||.|+... .+.++.++. +.+.++.+ |++ ........+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~ 155 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQK-----AREMIELV--GLPEELLARSPFELSGGQMRRVA 155 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHC--CCChhhhhCCcccCCHHHHHHHH
Confidence 778999999998 68889999999986321 233322211 12223332 443 2335667889999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhc
Q 001041 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVE 609 (1178)
Q Consensus 533 lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1178)
|||||+.+|++|||||||++||+.+.+.+.+.++++.+ +.|+|+|||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 156 lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 235 (290)
T PRK13634 156 IAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFA 235 (290)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999999999988753 789999999999885 599999999999999999999875
Q ss_pred C
Q 001041 610 D 610 (1178)
Q Consensus 610 ~ 610 (1178)
.
T Consensus 236 ~ 236 (290)
T PRK13634 236 D 236 (290)
T ss_pred C
Confidence 4
No 157
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=4.9e-40 Score=377.23 Aligned_cols=217 Identities=32% Similarity=0.549 Sum_probs=185.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++. ++.+
T Consensus 14 ~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 14 LVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred eEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 5899999999963 4589999999999999999999999999999999999999999999999999877665 4679
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCC--CCHH----HHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHH
Q 001041 463 GLVSQEPVLFT-GSIKDNIAYGKDD--ATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1178)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~----~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lAR 535 (1178)
+||+|++.+|. .||+|||.|+... .+.+ ++.++++.. |++........+||||||||++|||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~p~~LSgGq~QRVaLAR 157 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMV-----------QLEEFAQRKPHQLSGGQQQRVAIAR 157 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHc-----------CCchhhhCChhhCCHHHHHHHHHHH
Confidence 99999999995 5999999987431 1222 233333333 4444455566789999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcCCC
Q 001041 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPE 612 (1178)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~ 612 (1178)
||+++|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|++.|+++++..++.
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~ 237 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPK 237 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999988764 789999999999865 599999999999999999999988765
Q ss_pred chH
Q 001041 613 GAY 615 (1178)
Q Consensus 613 ~~~ 615 (1178)
..|
T Consensus 238 ~~~ 240 (375)
T PRK09452 238 NLF 240 (375)
T ss_pred cHH
Confidence 444
No 158
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=4.1e-40 Score=357.15 Aligned_cols=217 Identities=26% Similarity=0.471 Sum_probs=179.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHH-hcce
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI-RKKI 462 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~-r~~i 462 (1178)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+.... |+++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 478999999963 369999999999999999999999999999999999999999999999999988776554 5679
Q ss_pred EEEcCCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCC
Q 001041 463 GLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1178)
Q Consensus 463 ~~v~Q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~ 541 (1178)
+|+||++.+|.. |++||+.++.......+.... +.+.++.++ +++........+||||||||++||||++.+|
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~-----~~~~l~~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~p 151 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKAR-----LERVYELFP-RLKERRKQLAGTLSGGEQQMLAIARALMSRP 151 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHH-----HHHHHHHHH-hhhhhhhCchhhCCHHHHHHHHHHHHHhcCC
Confidence 999999998875 999999876432211111111 111222221 2334455667789999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhc
Q 001041 542 RILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1178)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 609 (1178)
+++||||||++||+.+...+.+.++++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 152 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 152 KLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 9999999999999999999999998875 47899999999998765 99999999999999999887653
No 159
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=5.8e-40 Score=375.18 Aligned_cols=221 Identities=32% Similarity=0.536 Sum_probs=185.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+. .++++
T Consensus 2 ~L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 76 (353)
T PRK10851 2 SIEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKV 76 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCE
Confidence 3789999999963 469999999999999999999999999999999999999999999999999987654 35689
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCC------CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHH
Q 001041 463 GLVSQEPVLFT-GSIKDNIAYGKDD------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1178)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lAR 535 (1178)
+||+|++.+|. .|++||+.|+... .+.++..+ .+.+.++.+ |++.........||||||||++|||
T Consensus 77 ~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LSgGq~QRvalAr 149 (353)
T PRK10851 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKA-----KVTQLLEMV--QLAHLADRYPAQLSGGQKQRVALAR 149 (353)
T ss_pred EEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHH
Confidence 99999999996 6999999987431 12222111 112223332 4444556667899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcCCC
Q 001041 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612 (1178)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 612 (1178)
||+++|++||||||||+||+.+...+.+.++++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++++..++.
T Consensus 150 AL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~p~ 229 (353)
T PRK10851 150 ALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPA 229 (353)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999988764 6899999999998765 99999999999999999999987754
Q ss_pred chH
Q 001041 613 GAY 615 (1178)
Q Consensus 613 ~~~ 615 (1178)
..|
T Consensus 230 ~~~ 232 (353)
T PRK10851 230 TRF 232 (353)
T ss_pred chH
Confidence 444
No 160
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-40 Score=366.08 Aligned_cols=212 Identities=31% Similarity=0.557 Sum_probs=182.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++++|+. ..++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|.++.+.+...+++++
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 4899999999963 24699999999999999999999999999999999999999999999999999888888888899
Q ss_pred EEEcCCC--CCCcccHHHHHhcCCCC--CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHH
Q 001041 463 GLVSQEP--VLFTGSIKDNIAYGKDD--ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1178)
Q Consensus 463 ~~v~Q~~--~l~~~ti~~ni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lA 534 (1178)
+|++|+| .++..|++||+.|+... .+. +++..+++.+++ ..........||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L-----------~~~~~~~~~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRM-----------WDFRDKPPYHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCC-----------HHHhcCChhhCCHHHHHHHHHH
Confidence 9999998 67889999999986321 222 223333333333 3334445568999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHH
Q 001041 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 607 (1178)
|||+.+|++|||||||++||+.+...+.+.++++. +++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99999999999999999999999999999998875 4789999999999985 5999999999999999998764
No 161
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=3.8e-40 Score=376.91 Aligned_cols=223 Identities=30% Similarity=0.490 Sum_probs=187.7
Q ss_pred cccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCC--CcEEECCeecCCCCHHHH
Q 001041 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA--GEVLIDGINLKEFQLQWI 458 (1178)
Q Consensus 381 ~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~--G~i~i~g~~~~~~~~~~~ 458 (1178)
.+.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|.|+++|++ |+|.++|.++.+.+..
T Consensus 3 ~~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~-- 77 (362)
T TIGR03258 3 CGGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPH-- 77 (362)
T ss_pred ceEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHH--
Confidence 367999999999963 369999999999999999999999999999999999999999 9999999999876653
Q ss_pred hcceEEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHH
Q 001041 459 RKKIGLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1178)
Q Consensus 459 r~~i~~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lAR 535 (1178)
++.|+||+|++.+|. .||+|||.|+... .+.++... .+.+.++.+ |++........+||||||||++|||
T Consensus 78 ~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~-----~v~~~l~~~--gL~~~~~~~~~~LSgGq~QRvaLAR 150 (362)
T TIGR03258 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAE-----RVADALKLV--GLGDAAAHLPAQLSGGMQQRIAIAR 150 (362)
T ss_pred HCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHhc--CCCchhhCChhhCCHHHHHHHHHHH
Confidence 468999999999995 5999999986421 22222221 112233333 5555566777899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc---CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcCC
Q 001041 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV---NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDP 611 (1178)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~---~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 611 (1178)
||+++|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|++++.|+++++..++
T Consensus 151 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~p 230 (362)
T TIGR03258 151 AIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAP 230 (362)
T ss_pred HHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99999999999999999999999999999987654 689999999999875 49999999999999999999998875
Q ss_pred CchH
Q 001041 612 EGAY 615 (1178)
Q Consensus 612 ~~~~ 615 (1178)
...|
T Consensus 231 ~~~~ 234 (362)
T TIGR03258 231 ADGF 234 (362)
T ss_pred CcHH
Confidence 4443
No 162
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-40 Score=366.46 Aligned_cols=216 Identities=31% Similarity=0.562 Sum_probs=185.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++++|+.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.|
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 48999999999642 34699999999999999999999999999999999999999999999999999888877788899
Q ss_pred EEEcCCC--CCCcccHHHHHhcCCCC--CCHH----HHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHH
Q 001041 463 GLVSQEP--VLFTGSIKDNIAYGKDD--ATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1178)
Q Consensus 463 ~~v~Q~~--~l~~~ti~~ni~~~~~~--~~~~----~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lA 534 (1178)
+|++|+| .++..|++|||.++... .+.+ ++.++++.. |++..+......||||||||++||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~-----------gL~~~~~~~~~~LS~G~~qrv~la 152 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQV-----------GMEDFLNREPHRLSGGQKQRVAIA 152 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHc-----------CChhhhhCCcccCCHHHHHHHHHH
Confidence 9999998 46688999999875321 1222 233333333 344444555678999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcC
Q 001041 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
||++.+|++|||||||++||+.+...+.+.++++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999999988764 6899999999999988999999999999999999988754
No 163
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=2.7e-39 Score=358.57 Aligned_cols=213 Identities=29% Similarity=0.490 Sum_probs=190.5
Q ss_pred CCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHH
Q 001041 379 DIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI 458 (1178)
Q Consensus 379 ~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~ 458 (1178)
...+.|+++|+++.+ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|.+|+|.++|
T Consensus 35 ~~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g----------- 98 (282)
T cd03291 35 SDDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG----------- 98 (282)
T ss_pred CCCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-----------
Confidence 344569999999962 3599999999999999999999999999999999999999999999998
Q ss_pred hcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhc
Q 001041 459 RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1178)
Q Consensus 459 r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~ 538 (1178)
+|+|++|++++++.|++||+.++.. ....++...++.+++.+.+..+|.+.++.+++.+.+||||||||++||||++
T Consensus 99 --~i~yv~q~~~l~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~ 175 (282)
T cd03291 99 --RISFSSQFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVY 175 (282)
T ss_pred --EEEEEeCcccccccCHHHHhhcccc-cCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHh
Confidence 5999999999999999999998643 2344556667777888889999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHH-HHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcC
Q 001041 539 KDPRILLLDEATSALDAESEKVVQEA-LDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~-i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
++|++|||||||++||+.+...+.+. ++.+.+++|+|++||+++.+..||++++|++|++++.|+++++.+.
T Consensus 176 ~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 248 (282)
T cd03291 176 KDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSL 248 (282)
T ss_pred cCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 99999999999999999998888765 4555567899999999999988999999999999999999998764
No 164
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=6.2e-40 Score=350.35 Aligned_cols=200 Identities=34% Similarity=0.553 Sum_probs=180.1
Q ss_pred EEEEeEEEECCCCCC--CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcc
Q 001041 384 IELRDVYFSYPARPN--EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~--~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1178)
++++|++++|++..+ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 478999999965311 3699999999999999999999999999999999999999999999998 6
Q ss_pred eEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCC
Q 001041 462 IGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1178)
Q Consensus 462 i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~ 541 (1178)
|+|++|+|++|+.|++||+.++.. ..+++.+++++.+++.+++..+|.|+++.+++.+.+||||||||++||||++.+|
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p 146 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKP-FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDA 146 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCC-cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999998643 4456677788888888999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHH-HHHHHh-cCCeEEEEecCcchhhccCEEEEEeCCE
Q 001041 542 RILLLDEATSALDAESEKVVQE-ALDRIM-VNRTTVIVAHRLSTVRNADMIAVIHRGK 597 (1178)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~-~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~ 597 (1178)
+++||||||++||+++.+.+.+ .++... +++|+|++||+++.+..||++++|++|+
T Consensus 147 ~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 147 DIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 9999999999999999887776 455553 4689999999999998899999999985
No 165
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.5e-40 Score=359.79 Aligned_cols=218 Identities=34% Similarity=0.573 Sum_probs=183.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
++++|++++|++. .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4689999999741 46999999999999999999999999999999999999999999999999998888777888999
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccc--hhcCCCCCCChHHHHHHHHHHHhc
Q 001041 464 LVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDT--LVGEHGTQLSGGQKQRIAIARAIL 538 (1178)
Q Consensus 464 ~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t--~~~~~g~~lSgGqkqri~lARal~ 538 (1178)
|+||+|.+|. .|++||+.++... .+.++.. ..+.+.++.+ |+.. ...+...+||||||||++||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~l--~l~~~~~~~~~~~~LS~G~~qrv~laral~ 151 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIR-----ERADELLALV--GLDPAEFADRYPHELSGGQQQRVGVARALA 151 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CCCcHHHHhcChhhCCHHHHHHHHHHHHHh
Confidence 9999998885 7999999875211 1111111 1122334443 4443 456677899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcC
Q 001041 539 KDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
++|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 152 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 152 ADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 99999999999999999999999999988753 789999999999875 5999999999999999999988654
No 166
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.2e-40 Score=360.52 Aligned_cols=215 Identities=33% Similarity=0.572 Sum_probs=181.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCC---HHHHhc
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ---LQWIRK 460 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~---~~~~r~ 460 (1178)
++++|++++|++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 468999999964 146999999999999999999999999999999999999999999999999988776 456788
Q ss_pred ceEEEcCCCCCCc-ccHHHHHhcCCCCC-----------CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 001041 461 KIGLVSQEPVLFT-GSIKDNIAYGKDDA-----------TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1178)
Q Consensus 461 ~i~~v~Q~~~l~~-~ti~~ni~~~~~~~-----------~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqk 528 (1178)
.++|+||++.+|. .|++||+.++.... .++.. ..+.+.++.+ |+.......+.+||||||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~--~l~~~~~~~~~~LS~G~~ 150 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEK------QRALAALERV--GLLDKAYQRADQLSGGQQ 150 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHH------HHHHHHHHHc--CChhhhCCCcccCCHHHH
Confidence 9999999998876 79999998753210 11111 1122333333 455556677889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChh
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHS 605 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~ 605 (1178)
||++||||++++|++|||||||++||+.+...+.+.++++. .++|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 151 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 230 (241)
T cd03256 151 QRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPA 230 (241)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHH
Confidence 99999999999999999999999999999999999998875 3789999999999987 59999999999999999998
Q ss_pred HHh
Q 001041 606 KLV 608 (1178)
Q Consensus 606 ~l~ 608 (1178)
++.
T Consensus 231 ~~~ 233 (241)
T cd03256 231 ELT 233 (241)
T ss_pred Hhh
Confidence 863
No 167
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-40 Score=368.48 Aligned_cols=220 Identities=29% Similarity=0.493 Sum_probs=181.8
Q ss_pred EEEEeEEEECCCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCC---------
Q 001041 384 IELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE--------- 452 (1178)
Q Consensus 384 i~~~~~~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~--------- 452 (1178)
|+++|++++|++.. ..++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|.+...
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 78999999997432 1369999999999999999999999999999999999999999999999877532
Q ss_pred ---------------CCHHHHhcceEEEcCCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCcc
Q 001041 453 ---------------FQLQWIRKKIGLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGID 513 (1178)
Q Consensus 453 ---------------~~~~~~r~~i~~v~Q~~--~l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~ 513 (1178)
.+...+|++|+||+|+| .+|..||+|||.|+... .+.++..+. +.+.++.+ |++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~ 155 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKR-----AAKYIELV--GLD 155 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCC
Confidence 13456788999999987 67888999999986422 223222211 11223332 453
Q ss_pred -chhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhh-ccCEE
Q 001041 514 -TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMI 590 (1178)
Q Consensus 514 -t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i 590 (1178)
........+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.++++. +++|+|+|||+++.+. .||+|
T Consensus 156 ~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv 235 (305)
T PRK13651 156 ESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRT 235 (305)
T ss_pred hhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEE
Confidence 34567778999999999999999999999999999999999999999999998764 4789999999999875 59999
Q ss_pred EEEeCCEEEEecChhHHhcC
Q 001041 591 AVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 591 ~~l~~G~i~~~g~~~~l~~~ 610 (1178)
++|++|++++.|+++++.++
T Consensus 236 ~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 236 IFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred EEEECCEEEEECCHHHHhcC
Confidence 99999999999999998764
No 168
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9e-40 Score=332.24 Aligned_cols=220 Identities=26% Similarity=0.439 Sum_probs=191.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHH-hcc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI-RKK 461 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~-r~~ 461 (1178)
.++++|++..|+. ..+|+++||++++||+++++||||+|||||+++|+|+.++.+|+|.++|.|+...+++.. |..
T Consensus 3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 4789999999964 469999999999999999999999999999999999999999999999999999988764 678
Q ss_pred eEEEcCCCCCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccC
Q 001041 462 IGLVSQEPVLF-TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1178)
Q Consensus 462 i~~v~Q~~~l~-~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~ 540 (1178)
|+||||.-.+| +-||+||+.+|.....+++.+. ..+++..+-+| -+....+.++.+|||||+|.+||||||+.+
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~----~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQE----RDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhccccccccc----ccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 99999999999 5799999998743322211111 11334455666 467778889999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcC
Q 001041 541 PRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
|++|+|||||.+|-|.-.+.|.+.|+++.+ +-||++|.++..... -+||.+||++|+|+..|+.+||.++
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 999999999999999999999999999874 459999999999865 5999999999999999999999876
No 169
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7e-40 Score=357.81 Aligned_cols=220 Identities=33% Similarity=0.543 Sum_probs=183.5
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHH---HHh
Q 001041 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ---WIR 459 (1178)
Q Consensus 384 i~~~~~~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~---~~r 459 (1178)
|+++|++++|+++. ..++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+.. ..+
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 68999999996431 12699999999999999999999999999999999999999999999999998876544 347
Q ss_pred cceEEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHH
Q 001041 460 KKIGLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1178)
Q Consensus 460 ~~i~~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARa 536 (1178)
+.++|+||+|.+|. .|++||+.++... .+..+.. ..+.+.++.+ |++........+||||||||++||||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~a 154 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIE-----ERVLELLELV--GLEDKADAYPAQLSGGQKQRVGIARA 154 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHC--CChhhhhcChhhCCHHHHHHHHHHHH
Confidence 78999999999986 6999999875321 1111111 1122344444 55555666778999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
++++|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 155 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 231 (233)
T cd03258 155 LANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFAN 231 (233)
T ss_pred HhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcC
Confidence 9999999999999999999999999999988753 7899999999999865 999999999999999999887653
No 170
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=3.2e-40 Score=356.13 Aligned_cols=203 Identities=30% Similarity=0.512 Sum_probs=169.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHH---HHhc
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ---WIRK 460 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~---~~r~ 460 (1178)
++++|++++|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+|+
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 6899999999642 24699999999999999999999999999999999999999999999999998776543 3678
Q ss_pred ceEEEcCCCCCCc-ccHHHHHhcCCCC--CC----HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHH
Q 001041 461 KIGLVSQEPVLFT-GSIKDNIAYGKDD--AT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1178)
Q Consensus 461 ~i~~v~Q~~~l~~-~ti~~ni~~~~~~--~~----~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~l 533 (1178)
+++|++|+|.+|. .|++||+.++... .. ++++.++++..+ +.........+||||||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVG-----------LEGKAHALPMQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-----------ChhhhhCChhhCCHHHHHHHHH
Confidence 8999999998885 6999999875211 11 223333343333 3333445556899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEE
Q 001041 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKI 598 (1178)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i 598 (1178)
|||++.+|++|||||||++||+.+.+.+.+.++++. +++|+|+|||+++.+.. ||+|++|++|++
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999998764 37899999999999875 999999999975
No 171
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.7e-40 Score=365.52 Aligned_cols=218 Identities=33% Similarity=0.524 Sum_probs=180.0
Q ss_pred EEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHH----hc
Q 001041 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI----RK 460 (1178)
Q Consensus 385 ~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~----r~ 460 (1178)
.++|+++.|+. .++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+...+ ++
T Consensus 26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 45677777753 468999999999999999999999999999999999999999999999999987765443 35
Q ss_pred ceEEEcCCCCCC-cccHHHHHhcCCCC--CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHH
Q 001041 461 KIGLVSQEPVLF-TGSIKDNIAYGKDD--ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1178)
Q Consensus 461 ~i~~v~Q~~~l~-~~ti~~ni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~l 533 (1178)
+++|+||++.+| ..|++||+.++... ... +++.++++.. |++..+.....+||||||||++|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~Gq~qrv~l 171 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELV-----------GLEGWEHKYPDELSGGMQQRVGL 171 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCHhHhhCCcccCCHHHHHHHHH
Confidence 799999999988 57999999875311 111 2223333333 44444455567899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcC
Q 001041 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
|||++++|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 172 Aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 172 ARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999988753 789999999999875 4999999999999999999999765
Q ss_pred CCchHH
Q 001041 611 PEGAYS 616 (1178)
Q Consensus 611 ~~~~~~ 616 (1178)
+...|.
T Consensus 252 ~~~~~~ 257 (269)
T cd03294 252 PANDYV 257 (269)
T ss_pred cCcHHH
Confidence 444333
No 172
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=5.2e-40 Score=355.69 Aligned_cols=215 Identities=23% Similarity=0.471 Sum_probs=178.1
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
|+++|+++.|+.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..++++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEE
Confidence 4789999999642 146999999999999999999999999999999999999999999999999987543 56677899
Q ss_pred EEcCCCCCC-cccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccC
Q 001041 464 LVSQEPVLF-TGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1178)
Q Consensus 464 ~v~Q~~~l~-~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~ 540 (1178)
|++|++.++ ..|++||+.++.. ....++..+ .+.+.++.+ |+.........+||||||||++||||++.+
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKE-----EVELLLRVL--GLTDKANKRARTLSGGMKRKLSLAIALIGG 151 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHHhChhhhCCHHHHHHHHHHHHHhcC
Confidence 999999888 6899999986421 112211111 112223322 333334455678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHH
Q 001041 541 PRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1178)
|+++||||||++||+.+.+.+.+.++++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 152 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 152 PSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999988777999999999999865 999999999999999998765
No 173
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=9.7e-40 Score=359.26 Aligned_cols=220 Identities=30% Similarity=0.523 Sum_probs=180.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCH---HHHhc
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL---QWIRK 460 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~---~~~r~ 460 (1178)
++++|++++|+. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 679999999962 2469999999999999999999999999999999999999999999999999877654 34678
Q ss_pred ceEEEcCCCCCCc-ccHHHHHhcCCCCCCH--HHH---HHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHH
Q 001041 461 KIGLVSQEPVLFT-GSIKDNIAYGKDDATT--EEI---RVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1178)
Q Consensus 461 ~i~~v~Q~~~l~~-~ti~~ni~~~~~~~~~--~~~---~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lA 534 (1178)
+++|+||++.+|. .|++||+.++...... ... ........+.+.++.+ |++........+||||||||++||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 157 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERV--GLADKAYQRADQLSGGQQQRVAIA 157 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHH
Confidence 8999999998885 6999999875321100 000 0000011122333333 555556677789999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHH
Q 001041 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 607 (1178)
||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 158 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 158 RALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHh
Confidence 999999999999999999999999999999988753 689999999999985 5999999999999999999886
No 174
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.8e-40 Score=365.46 Aligned_cols=219 Identities=26% Similarity=0.525 Sum_probs=184.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecC--CCCHHHHhc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK--EFQLQWIRK 460 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~--~~~~~~~r~ 460 (1178)
.|+++|++++|+. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++. ..+...+|+
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 4899999999963 246999999999999999999999999999999999999999999999999984 344567888
Q ss_pred ceEEEcCCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHH
Q 001041 461 KIGLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1178)
Q Consensus 461 ~i~~v~Q~~--~l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARa 536 (1178)
+++|+||+| .++..|++||+.++... .+.++.++. +.+.++.+ |+.........+||||||||++||||
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~LS~G~~qrl~lara 155 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKR-----VDNALKRT--GIEHLKDKPTHCLSFGQKKRVAIAGV 155 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHH-----HHHHHHHC--CChhhhhCCcccCCHHHHHHHHHHHH
Confidence 999999998 57889999999875321 222222111 11222222 45555567788999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcC
Q 001041 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
|+.+|++|||||||++||+.+...+.+.++++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 156 L~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 232 (283)
T PRK13636 156 LVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232 (283)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999988764 789999999999987 5999999999999999999998764
No 175
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=1e-39 Score=376.20 Aligned_cols=214 Identities=25% Similarity=0.468 Sum_probs=186.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|.|+++|.+|+|.++|.++.+++...++++|
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 4889999999963 4699999999999999999999999999999999999999999999999999999988899999
Q ss_pred EEEcCCCCC-CcccHHHHHhcCCCCC-------C---HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHH
Q 001041 463 GLVSQEPVL-FTGSIKDNIAYGKDDA-------T---TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1178)
Q Consensus 463 ~~v~Q~~~l-~~~ti~~ni~~~~~~~-------~---~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri 531 (1178)
+||+|++.+ ++.|++||+.++...+ . .++++++++..+ +.........+||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vg-----------l~~~~~~~~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTG-----------VAQFADRPVTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcC-----------CchhhcCChhhCCHHHHHHH
Confidence 999999987 5889999999874211 1 123344444443 33334455678999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhc
Q 001041 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVE 609 (1178)
Q Consensus 532 ~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1178)
+|||||+++|++|||||||++||+.+...+.+.++++. +++|+|++||+++.+. .||++++|++|++++.|++++++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 99999999999999999999999999999999998875 4789999999999985 599999999999999999999876
Q ss_pred C
Q 001041 610 D 610 (1178)
Q Consensus 610 ~ 610 (1178)
.
T Consensus 229 ~ 229 (402)
T PRK09536 229 A 229 (402)
T ss_pred c
Confidence 4
No 176
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.8e-40 Score=361.52 Aligned_cols=219 Identities=31% Similarity=0.478 Sum_probs=182.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCcEEECCeecC--CCCH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLK--EFQL 455 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~--~~~~ 455 (1178)
.++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|.|+++| ++|+|.++|.++. +.+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 4889999999963 3699999999999999999999999999999999999987 4999999999987 4555
Q ss_pred HHHhcceEEEcCCCCCCcc-cHHHHHhcCCCC----CCHH----HHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChH
Q 001041 456 QWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDD----ATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1178)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~-ti~~ni~~~~~~----~~~~----~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgG 526 (1178)
..+|++++|++|++.+|.. |++||+.++... ...+ ++..+++..++.+ .+.........+||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G 153 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWD-------EVKDRLNDYPSNLSGG 153 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCcc-------chhhhhccChhhCCHH
Confidence 6678899999999999864 999999875311 0122 2222222222211 1123456677899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChh
Q 001041 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHS 605 (1178)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 605 (1178)
||||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 233 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTR 233 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999988777999999999999765 9999999999999999999
Q ss_pred HHhcCC
Q 001041 606 KLVEDP 611 (1178)
Q Consensus 606 ~l~~~~ 611 (1178)
++.+.+
T Consensus 234 ~~~~~~ 239 (253)
T PRK14267 234 KVFENP 239 (253)
T ss_pred HHHhCC
Confidence 987653
No 177
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-39 Score=361.12 Aligned_cols=220 Identities=35% Similarity=0.502 Sum_probs=184.7
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCCcEEECCeecCC--CC
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--FQ 454 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-----~~~G~i~i~g~~~~~--~~ 454 (1178)
..|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 35999999999963 469999999999999999999999999999999999987 589999999998863 45
Q ss_pred HHHHhcceEEEcCCCCCCcccHHHHHhcCCCC--CC---HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHH
Q 001041 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--AT---TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1178)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~~---~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkq 529 (1178)
...+|++++|++|+|.+|..|++||+.++... .. ++++.++++..++ ..+++........+|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~l~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAV-------WDECKDKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCC-------cchhhhhhCCCcccCCHHHHH
Confidence 66778899999999999988999999976421 11 1222333333322 123344556677899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhh-ccCEEEEEeC-----------CE
Q 001041 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHR-----------GK 597 (1178)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~~-----------G~ 597 (1178)
|++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||++++|++ |+
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~ 241 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY 241 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence 99999999999999999999999999999999999998876789999999999886 4999999996 67
Q ss_pred EEEecChhHHhcCC
Q 001041 598 IVEKGTHSKLVEDP 611 (1178)
Q Consensus 598 i~~~g~~~~l~~~~ 611 (1178)
+++.|+++++...+
T Consensus 242 ~~~~~~~~~~~~~~ 255 (269)
T PRK14259 242 LVEFNETKKIFNSP 255 (269)
T ss_pred EEEeCCHHHHHhCc
Confidence 99999999987653
No 178
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=1.6e-39 Score=368.87 Aligned_cols=229 Identities=28% Similarity=0.430 Sum_probs=189.1
Q ss_pred cEEEEeEEEECCCCC----------CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCC
Q 001041 383 DIELRDVYFSYPARP----------NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE 452 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~----------~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~ 452 (1178)
-++++|++++|+.+. ...+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 489999999996421 2468999999999999999999999999999999999999999999999999988
Q ss_pred CCHHH---HhcceEEEcCCC--CCC-cccHHHHHhcCC----CCCCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCC
Q 001041 453 FQLQW---IRKKIGLVSQEP--VLF-TGSIKDNIAYGK----DDATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGT 521 (1178)
Q Consensus 453 ~~~~~---~r~~i~~v~Q~~--~l~-~~ti~~ni~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~g~~-t~~~~~g~ 521 (1178)
++... +|++|+||+|+| .++ ..||.|||.++. +..+.++..+.. .+.++.+ |++ ........
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~-----~~~l~~v--gl~~~~~~~~p~ 160 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRV-----KAMMLKV--GLLPNLINRYPH 160 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHH-----HHHHHHc--CCChHHhcCCcc
Confidence 87543 577899999999 466 589999997532 112333322211 1222222 332 23566778
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEE
Q 001041 522 QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKI 598 (1178)
Q Consensus 522 ~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i 598 (1178)
+||||||||++|||||+.+|++||+||||++||+.+...+.+.++++.+ +.|+|+|||+++.+.. ||+|++|++|+|
T Consensus 161 ~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~i 240 (331)
T PRK15079 161 EFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHA 240 (331)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999988754 7899999999999975 999999999999
Q ss_pred EEecChhHHhcCCCchHHHH
Q 001041 599 VEKGTHSKLVEDPEGAYSQL 618 (1178)
Q Consensus 599 ~~~g~~~~l~~~~~~~~~~~ 618 (1178)
+|.|+++++..++...|.+.
T Consensus 241 ve~g~~~~i~~~~~~py~~~ 260 (331)
T PRK15079 241 VELGTYDEVYHNPLHPYTKA 260 (331)
T ss_pred EEEcCHHHHHcCCCCHHHHH
Confidence 99999999988766667653
No 179
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.8e-40 Score=376.60 Aligned_cols=221 Identities=29% Similarity=0.483 Sum_probs=184.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. +++|
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGV 77 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCE
Confidence 4889999999963 4599999999999999999999999999999999999999999999999999876653 4679
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 463 GLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
+||+|++.+|. .|++||+.|+... .+.++..+ .+.+.++.+ |++........+||||||||++|||||+.
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~l--gL~~~~~~~~~~LSgGq~QRvaLAraL~~ 150 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQ-----RVNQVAEVL--QLAHLLDRKPKALSGGQRQRVAIGRTLVA 150 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHH-----HHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999985 6999999986431 12221111 112223333 45555566667899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcCCCchH
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 615 (1178)
+|++||||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|++++.|+++++...+...|
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~~~~ 229 (369)
T PRK11000 151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPANRF 229 (369)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcccHH
Confidence 9999999999999999999999999988753 789999999999875 499999999999999999999987654333
No 180
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=1e-39 Score=356.83 Aligned_cols=216 Identities=29% Similarity=0.533 Sum_probs=183.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +++++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLG 77 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEE
Confidence 678999999963 46999999999999999999999999999999999999999999999999988766544 45899
Q ss_pred EEcCCCCC-CcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccC
Q 001041 464 LVSQEPVL-FTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1178)
Q Consensus 464 ~v~Q~~~l-~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~ 540 (1178)
|++|++.+ +..|++||+.++... ...++... .+.+.++.+ |++........+||||||||++||||++++
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~ 150 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARE-----RIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHR 150 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999987 468999999865321 12221111 123344444 666667778889999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcC
Q 001041 541 PRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
|+++||||||++||+.+.+.+.+.++++. +++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 151 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 151 PALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999999999999998875 37899999999999988999999999999999999888754
No 181
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-39 Score=360.09 Aligned_cols=220 Identities=30% Similarity=0.476 Sum_probs=183.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC--C---CCCcEEECCeecCC--CCH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD--P---QAGEVLIDGINLKE--FQL 455 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~--~---~~G~i~i~g~~~~~--~~~ 455 (1178)
.|+++|+++.|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.++.. .+.
T Consensus 12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 4899999999963 369999999999999999999999999999999999987 3 58999999999863 345
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCCC---CHHHH----HHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 001041 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA---TTEEI----RVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1178)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~---~~~~~----~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqk 528 (1178)
..+|+.++|+||+|.+|..|++||+.++.... .+++. ..+++..++.+ .+.........+||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~l~~~~~~LS~Gq~ 161 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWD-------EVKDRLHTQALSLSGGQQ 161 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCch-------hhhhhhhCCcccCCHHHH
Confidence 56788999999999999899999998753211 12221 22222222211 112345667789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHH
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1178)
||++||||++++|+++||||||++||+++...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 241 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKM 241 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999988778899999999998864 999999999999999999998
Q ss_pred hcCCC
Q 001041 608 VEDPE 612 (1178)
Q Consensus 608 ~~~~~ 612 (1178)
.+++.
T Consensus 242 ~~~~~ 246 (259)
T PRK14274 242 FSNPD 246 (259)
T ss_pred hhCCC
Confidence 76543
No 182
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-39 Score=358.74 Aligned_cols=220 Identities=32% Similarity=0.498 Sum_probs=184.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCcEEECCeecCCCCHHH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKEFQLQW 457 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~~~~~~ 457 (1178)
.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++| ++|+|.++|.++...+...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 4889999999963 3699999999999999999999999999999999999974 6999999999998888778
Q ss_pred HhcceEEEcCCCCCC-cccHHHHHhcCCCCC----CH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 001041 458 IRKKIGLVSQEPVLF-TGSIKDNIAYGKDDA----TT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1178)
Q Consensus 458 ~r~~i~~v~Q~~~l~-~~ti~~ni~~~~~~~----~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqk 528 (1178)
+|+.|+|++|+|.++ ..|++||+.++.... .. +++.++++..++.+ .++........+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWD-------EVKDRLDAPAGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCc-------chhhhhcCCcccCCHHHH
Confidence 889999999999755 689999998753211 11 22233333333211 112334566678999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHH
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 607 (1178)
||++||||++++|+++||||||++||+.+...+.+.++++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHH
Confidence 999999999999999999999999999999999999988777899999999999885 5999999999999999999998
Q ss_pred hcCCC
Q 001041 608 VEDPE 612 (1178)
Q Consensus 608 ~~~~~ 612 (1178)
.+.+.
T Consensus 233 ~~~~~ 237 (250)
T PRK14247 233 FTNPR 237 (250)
T ss_pred HcCCc
Confidence 76543
No 183
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=1.2e-39 Score=355.95 Aligned_cols=216 Identities=25% Similarity=0.475 Sum_probs=182.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHH-Hhcce
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW-IRKKI 462 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~-~r~~i 462 (1178)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .+..+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 468999999963 46999999999999999999999999999999999999999999999999988776654 35679
Q ss_pred EEEcCCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 463 GLVSQEPVLFTG-SIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 463 ~~v~Q~~~l~~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
+|++|++.+|.+ |++||+.++.+. ...++... .+.+.++.+ |++........+||||||||++||||++.
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREE-----KLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999998875 999999875321 11111111 123344444 66666777788999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhc
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 609 (1178)
+|++|||||||++||+.+.+.+.+.++++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999999999998775 47899999999987755 99999999999999999988754
No 184
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-39 Score=362.79 Aligned_cols=217 Identities=31% Similarity=0.514 Sum_probs=185.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++++|+.....++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+|..+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743334699999999999999999999999999999999999999999999999999887777888899
Q ss_pred EEEcCCCC--CCcccHHHHHhcCCC--CCCHHHH----HHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHH
Q 001041 463 GLVSQEPV--LFTGSIKDNIAYGKD--DATTEEI----RVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1178)
Q Consensus 463 ~~v~Q~~~--l~~~ti~~ni~~~~~--~~~~~~~----~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lA 534 (1178)
+|++|+|. ++..|+.|||.++.. ....++. ..+++.+ |+..........||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAV-----------NMLDFKTREPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHC-----------CCHhHhhCCcccCCHHHHHHHHHH
Confidence 99999983 678899999987532 1233322 2333333 333334456678999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcC
Q 001041 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
||++++|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999988754 7899999999999988999999999999999999998764
No 185
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-39 Score=359.53 Aligned_cols=223 Identities=33% Similarity=0.505 Sum_probs=183.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCCcEEECCeecCC--CCH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--FQL 455 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-----~~~G~i~i~g~~~~~--~~~ 455 (1178)
.|+++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 4899999999963 469999999999999999999999999999999999997 479999999998854 344
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCCC---CHH----HHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 001041 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA---TTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1178)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~---~~~----~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqk 528 (1178)
..+|+.++|++|++.+|..|++||+.++.... ..+ ++..+++..++++ ...........+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWK-------ETKDNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCc-------chHHHhccChhhCCHHHH
Confidence 56788899999999999999999998753211 111 2222222222211 112234567789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHH
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1178)
||++||||++++|+++||||||++||+.+.+.+.+.++++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988777899999999999765 999999999999999999998
Q ss_pred hcCCCchH
Q 001041 608 VEDPEGAY 615 (1178)
Q Consensus 608 ~~~~~~~~ 615 (1178)
...+...|
T Consensus 234 ~~~~~~~~ 241 (251)
T PRK14251 234 FIAPKKQI 241 (251)
T ss_pred HhCCCCHH
Confidence 76544333
No 186
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-39 Score=361.55 Aligned_cols=220 Identities=30% Similarity=0.595 Sum_probs=186.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++++|+.. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+++
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 58999999999632 35699999999999999999999999999999999999999999999999999877777888899
Q ss_pred EEEcCCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhc
Q 001041 463 GLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1178)
Q Consensus 463 ~~v~Q~~--~l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~ 538 (1178)
+|++|+| .++..|++||+.++... .+.++.+. .+.+.++.+ |++........+||||||||++||||++
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral~ 158 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKD-----IIDDLAKKV--GMEDYLDKEPQNLSGGQKQRVAIASVLA 158 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHhhCCcccCCHHHHHHHHHHHHHH
Confidence 9999998 45678999999875321 22332221 112233333 4555566677899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcC
Q 001041 539 KDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
++|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 159 ~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 159 LNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999988753 4899999999999888999999999999999999888654
No 187
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-39 Score=354.34 Aligned_cols=214 Identities=26% Similarity=0.456 Sum_probs=178.5
Q ss_pred cEEEEeEEEECCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHH---H
Q 001041 383 DIELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW---I 458 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~---~ 458 (1178)
.++++|++++|+.+. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999997432 146999999999999999999999999999999999999999999999999998887643 3
Q ss_pred h-cceEEEcCCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHH
Q 001041 459 R-KKIGLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1178)
Q Consensus 459 r-~~i~~v~Q~~~l~~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lA 534 (1178)
| +.++|++|+|.+|. .|++||+.++.. ....++..+ .+.+.++.+ |++........+||||||||++||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrl~la 157 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINS-----RALEMLAAV--GLEHRANHRPSELSGGERQRVAIA 157 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHH
Confidence 3 67999999998886 499999987421 112221111 112333333 555566677789999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhhccCEEEEEeCCEEEEecC
Q 001041 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603 (1178)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~ 603 (1178)
||++.+|++|||||||++||+.+...+.+.++++. +++|+|++||+++.+..+|++++|++|++++.|+
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 158 RALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999998874 3789999999999998889999999999998775
No 188
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-39 Score=360.76 Aligned_cols=220 Identities=33% Similarity=0.502 Sum_probs=185.4
Q ss_pred cccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCcEEECCeecCC--C
Q 001041 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKE--F 453 (1178)
Q Consensus 381 ~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~--~ 453 (1178)
.+.++++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| .+|+|.++|.++.. .
T Consensus 23 ~~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 23 QTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CcEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 456999999999963 3699999999999999999999999999999999999874 79999999999864 3
Q ss_pred CHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCC---CH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChH
Q 001041 454 QLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA---TT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1178)
Q Consensus 454 ~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~---~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgG 526 (1178)
+...+|++++|++|++.+|..|++||+.++.... .. +++.++++..++.+ .+.+..+..+.+||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G 172 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWD-------EVKDRLHENAFGLSGG 172 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCh-------hHHHHhhCCcccCCHH
Confidence 4567788999999999999889999998753211 11 22333333333222 2234567778899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChh
Q 001041 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHS 605 (1178)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~ 605 (1178)
||||++||||++++|+++||||||++||+.+.+.+.+.++++.+++|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 252 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTD 252 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHH
Confidence 99999999999999999999999999999999999999998877889999999999876 59999999999999999999
Q ss_pred HHhcC
Q 001041 606 KLVED 610 (1178)
Q Consensus 606 ~l~~~ 610 (1178)
++.++
T Consensus 253 ~~~~~ 257 (272)
T PRK14236 253 TLFTS 257 (272)
T ss_pred HHhcC
Confidence 98765
No 189
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.4e-40 Score=351.65 Aligned_cols=207 Identities=36% Similarity=0.607 Sum_probs=172.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .+++++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEE
Confidence 468999999963 469999999999999999999999999999999999999999999999999876543 467899
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccC
Q 001041 464 LVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1178)
Q Consensus 464 ~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~ 540 (1178)
|+||+|.++. .|++||+.++... ...++..+ .+.+.++.+ |++........+||||||||++||||++++
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~la~al~~~ 148 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRA-----RVRELLELV--GLEGLLNRYPHELSGGQQQRVALARALARE 148 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHHHHhcC
Confidence 9999998875 6999999875321 12211111 112233333 455555666678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEec
Q 001041 541 PRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1178)
|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 149 p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 149 PSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999988753 7899999999998765 9999999999998765
No 190
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-39 Score=359.66 Aligned_cols=219 Identities=30% Similarity=0.471 Sum_probs=184.9
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCCcEEECCeecCC--CC
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--FQ 454 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-----~~~G~i~i~g~~~~~--~~ 454 (1178)
..|+++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|.|+++ |++|+|.++|.++.. .+
T Consensus 19 ~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 95 (267)
T PRK14237 19 IALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95 (267)
T ss_pred eEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence 46999999999963 469999999999999999999999999999999999996 479999999999864 34
Q ss_pred HHHHhcceEEEcCCCCCCcccHHHHHhcCCCC---CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH
Q 001041 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD---ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1178)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~---~~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGq 527 (1178)
...+|+.++|++|++.+|..|++||+.++... ... +++.++++..++.+ +.+...+....+|||||
T Consensus 96 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~i~~~~~~~~~~LS~G~ 168 (267)
T PRK14237 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWD-------QVKDDLHKSALTLSGGQ 168 (267)
T ss_pred hHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCc-------hhhhhhcCCcccCCHHH
Confidence 55678899999999999989999999875321 111 22233333333322 22345667788999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhH
Q 001041 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSK 606 (1178)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~ 606 (1178)
|||++||||++++|+++||||||++||+.+.+.+.+.|+++.++.|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 248 (267)
T PRK14237 169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRN 248 (267)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999998877789999999999885 599999999999999999999
Q ss_pred HhcC
Q 001041 607 LVED 610 (1178)
Q Consensus 607 l~~~ 610 (1178)
+.+.
T Consensus 249 ~~~~ 252 (267)
T PRK14237 249 IFTN 252 (267)
T ss_pred HhcC
Confidence 8764
No 191
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=1.3e-39 Score=352.07 Aligned_cols=211 Identities=27% Similarity=0.524 Sum_probs=175.6
Q ss_pred EEEEeEEEECCCCCC-CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 384 IELRDVYFSYPARPN-EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~-~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
++++|++++|+.... .++|+|+||++++||+++|+|+||||||||+++|.|+++|++|+|.++|.++.. ...++|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 689999999974311 269999999999999999999999999999999999999999999999999875 345678899
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 463 GLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
+|++|+|.+|. .|++||+.+.... ...++... .+.+.++.+ |++........+||||||||++||||++.
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~ 153 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTA-----RLEELADRL--GMEELLDRRVGGFSTGMRQKVAIARALVH 153 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHHhhhhhhcCHHHHHHHHHHHHHhc
Confidence 99999999887 5999999764221 12222111 112333333 55556667778999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEec
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1178)
+|+++||||||++||+.+.+.+.+.++++. +++|+|+|||+++.+.. ||++++|++|++++.|
T Consensus 154 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 154 DPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999998874 47899999999998765 9999999999998754
No 192
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-39 Score=356.50 Aligned_cols=220 Identities=35% Similarity=0.537 Sum_probs=183.5
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCcEEECCeecCC--CC
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKE--FQ 454 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~--~~ 454 (1178)
+.|+++|+++.|++ .++++|+||+|++||+++|+||||||||||+++|.|+++| ++|+|.++|+++.. .+
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 2 GKISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78 (250)
T ss_pred CeEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 46899999999963 3699999999999999999999999999999999998763 68999999999864 34
Q ss_pred HHHHhcceEEEcCCCCCCcccHHHHHhcCCCC---CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH
Q 001041 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD---ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1178)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~---~~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGq 527 (1178)
...+|++++|++|+|.+|..|+++|+.++... ... +++.++++..++.+ ++.........+|||||
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~ 151 (250)
T PRK14240 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWD-------EVKDRLKKSALGLSGGQ 151 (250)
T ss_pred hHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCch-------hhHHHHhcCCCCCCHHH
Confidence 55678899999999999999999999875321 111 22222333332211 22334566778999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhH
Q 001041 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606 (1178)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 606 (1178)
|||++||||++.+|+++||||||++||+.+...+.+.++++.+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 152 QQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999888778899999999998765 99999999999999999998
Q ss_pred HhcCC
Q 001041 607 LVEDP 611 (1178)
Q Consensus 607 l~~~~ 611 (1178)
+..++
T Consensus 232 ~~~~~ 236 (250)
T PRK14240 232 LFTNP 236 (250)
T ss_pred HHhCC
Confidence 87543
No 193
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-39 Score=372.85 Aligned_cols=223 Identities=32% Similarity=0.537 Sum_probs=186.2
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcc
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1178)
..++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|.|+.+|++|+|.++|.++.+.+. .++.
T Consensus 18 ~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 92 (377)
T PRK11607 18 PLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRP 92 (377)
T ss_pred ceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCC
Confidence 35999999999963 469999999999999999999999999999999999999999999999999987765 3568
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhc
Q 001041 462 IGLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1178)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~ 538 (1178)
|+||+|++.+|. .|++|||.|+... .+..+..+ .+.+.++.+ |+.........+||||||||++|||||+
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~-----~v~~~l~~l--~L~~~~~~~~~~LSgGq~QRVaLARAL~ 165 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIAS-----RVNEMLGLV--HMQEFAKRKPHQLSGGQRQRVALARSLA 165 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence 999999999995 5999999987431 22222211 112223333 4555556667789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcCCCchH
Q 001041 539 KDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615 (1178)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 615 (1178)
++|++||||||||+||+.+...+.+.++++.+ +.|+|+|||+++.+. .||+|++|++|++++.|+++++..++...|
T Consensus 166 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~~~~ 245 (377)
T PRK11607 166 KRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRY 245 (377)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCccHH
Confidence 99999999999999999999999888877643 689999999999865 599999999999999999999988765444
Q ss_pred H
Q 001041 616 S 616 (1178)
Q Consensus 616 ~ 616 (1178)
.
T Consensus 246 ~ 246 (377)
T PRK11607 246 S 246 (377)
T ss_pred H
Confidence 3
No 194
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=1.4e-39 Score=366.90 Aligned_cols=217 Identities=24% Similarity=0.456 Sum_probs=180.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...|++|
T Consensus 7 ~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 7 PIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred eEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 5899999999963 46999999999999999999999999999999999999999999999999987654 3568899
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 463 GLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
||+||+|.++. .|++||+.+.... .+..+.... +.+.++.+ |+.........+||||||||++|||||+.
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~aL~~ 155 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARAL-----VPPLLEFA--KLENKADAKVGELSGGMKRRLTLARALVN 155 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCchHhcCchhhCCHHHHHHHHHHHHHhC
Confidence 99999998885 7999999863221 122222211 11222222 33333344446899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
+|++|+|||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 156 ~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 156 DPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 999999999999999999999999998875 47899999999999865 999999999999999999998654
No 195
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=1.4e-39 Score=339.37 Aligned_cols=178 Identities=34% Similarity=0.670 Sum_probs=164.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
|+++|++++|+.. ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+|+.++
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 4789999999743 24699999999999999999999999999999999999999999999999988766 566788999
Q ss_pred EEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCE
Q 001041 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1178)
Q Consensus 464 ~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~i 543 (1178)
|++|+|++|+.|++||+ ..+||||||||++||||++++|++
T Consensus 79 ~~~q~~~~~~~tv~~~i---------------------------------------~~~LS~G~~qrv~laral~~~p~~ 119 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL---------------------------------------GRRFSGGERQRLALARILLQDAPI 119 (178)
T ss_pred EEccCCeeecccHHHhh---------------------------------------cccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 468999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEec
Q 001041 544 LLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 544 lllDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g 602 (1178)
+||||||++||+.+.+.+.+.++++.+++|+|++||+++.+..||++++|++|++++.|
T Consensus 120 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 120 VLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999998877789999999999999889999999999998754
No 196
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=8.1e-40 Score=353.65 Aligned_cols=208 Identities=36% Similarity=0.533 Sum_probs=173.3
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHH----H
Q 001041 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW----I 458 (1178)
Q Consensus 384 i~~~~~~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~----~ 458 (1178)
++++|++++|+... .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 46899999996421 146999999999999999999999999999999999999999999999999988776432 4
Q ss_pred hcceEEEcCCCCCCcc-cHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHH
Q 001041 459 RKKIGLVSQEPVLFTG-SIKDNIAYGKDDA--TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1178)
Q Consensus 459 r~~i~~v~Q~~~l~~~-ti~~ni~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lAR 535 (1178)
+++++|++|+|.+|.. |++||+.++.... ..++.. ..+.+.++.+ |++........+||||||||++|||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~ 153 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERR-----ERAEELLERV--GLGDRLNHYPSELSGGQQQRVAIAR 153 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHH-----HHHHHHHHHc--CCchhhhcChhhcCHHHHHHHHHHH
Confidence 5689999999998875 9999998754211 111111 1123344444 5665666777899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhccCEEEEEeCCEE
Q 001041 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKI 598 (1178)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i 598 (1178)
|++.+|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+..||+|++|++|++
T Consensus 154 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 154 ALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 99999999999999999999999999999988764 7899999999998888999999999974
No 197
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-39 Score=355.75 Aligned_cols=219 Identities=31% Similarity=0.523 Sum_probs=184.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC-----CCcEEECCeecCC--CCH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ-----AGEVLIDGINLKE--FQL 455 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~-----~G~i~i~g~~~~~--~~~ 455 (1178)
.++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|.|+++|. +|+|.++|.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 5899999999963 46999999999999999999999999999999999999987 6999999998864 345
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCC--C-CHHH----HHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 001041 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--A-TTEE----IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1178)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~-~~~~----~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqk 528 (1178)
..+|+.++|++|+|.+|..|++||+.++... . ..++ +..+++..++. +++.......+.+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~l~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALW-------DEVKDNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCc-------hhhhhHhhCCcccCCHHHH
Confidence 5678899999999999989999999875321 1 1111 22222222222 2233456778889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHH
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1178)
||++||||++.+|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999887667899999999999876 899999999999999999998
Q ss_pred hcCC
Q 001041 608 VEDP 611 (1178)
Q Consensus 608 ~~~~ 611 (1178)
...+
T Consensus 234 ~~~~ 237 (251)
T PRK14249 234 FSRP 237 (251)
T ss_pred HhCC
Confidence 7653
No 198
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-39 Score=358.45 Aligned_cols=219 Identities=35% Similarity=0.511 Sum_probs=182.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcc---CCC--CCCcEEECCeecCCC--CH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF---YDP--QAGEVLIDGINLKEF--QL 455 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~---~~~--~~G~i~i~g~~~~~~--~~ 455 (1178)
.++++|+++.|+. +++|+|+||++++||+++|+|+||||||||+++|.|+ ++| ++|+|.++|.++... +.
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 4889999999963 4699999999999999999999999999999999997 454 489999999998754 34
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCC--C-CHH----HHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 001041 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--A-TTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1178)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~-~~~----~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqk 528 (1178)
..+|++++|+||+|.+|..|++||+.++... . ..+ +++++++.+++ ++.+++.....+.+||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAAL-------WDEVKDKLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCC-------CcchhhhhhCCcccCCHHHH
Confidence 5678899999999999989999999875321 1 111 22222222222 22223455677889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHH
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 607 (1178)
||++||||++.+|+++||||||++||+.+.+.+.+.++++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~ 232 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKI 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999998877899999999999985 4999999999999999999999
Q ss_pred hcCC
Q 001041 608 VEDP 611 (1178)
Q Consensus 608 ~~~~ 611 (1178)
.+++
T Consensus 233 ~~~~ 236 (250)
T PRK14245 233 FTNP 236 (250)
T ss_pred hcCC
Confidence 7653
No 199
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=2.2e-39 Score=360.51 Aligned_cols=219 Identities=28% Similarity=0.472 Sum_probs=182.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHH---HHh
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ---WIR 459 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~---~~r 459 (1178)
.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .++
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 4899999999963 4699999999999999999999999999999999999999999999999998776543 356
Q ss_pred cceEEEcCCCCCCcc-cHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHH
Q 001041 460 KKIGLVSQEPVLFTG-SIKDNIAYGKDD---ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1178)
Q Consensus 460 ~~i~~v~Q~~~l~~~-ti~~ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lAR 535 (1178)
++++|++|++.+|.. |++||+.++... .+.++... .+.+.++.+ |+.........+||||||||++|||
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgGq~qrv~lar 156 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHS-----TVMMKLEAV--GLRGAAKLMPSELSGGMARRAALAR 156 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHH
Confidence 789999999999875 999999864211 12211111 111223332 4444455566789999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcCC
Q 001041 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDP 611 (1178)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 611 (1178)
|++++|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.+
T Consensus 157 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 235 (269)
T PRK11831 157 AIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANP 235 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhcCC
Confidence 99999999999999999999999999999988753 6899999999998865 9999999999999999999987653
No 200
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-39 Score=358.15 Aligned_cols=221 Identities=32% Similarity=0.492 Sum_probs=183.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCcEEECCeecCCC--CH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKEF--QL 455 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~~--~~ 455 (1178)
.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++| ++|+|.++|.++... +.
T Consensus 12 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 12 QIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 5999999999963 4699999999999999999999999999999999999975 799999999988643 23
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCC--CCHHH----HHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHH
Q 001041 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--ATTEE----IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1178)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~~~~~----~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkq 529 (1178)
..+|+.++|++|++.+|..|++||+.++... .+.++ +.++++.+++.+ ...........+|||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LSgG~~q 161 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWD-------ETSDRLKSPALSLSGGQQQ 161 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc-------chhhhhcCChhhCCHHHHH
Confidence 4567889999999999999999999875321 12222 222232222211 1123445667889999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHh
Q 001041 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608 (1178)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 608 (1178)
|++||||++.+|+++||||||++||+.+...+.+.++++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 162 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 162 RLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999987667999999999999865 9999999999999999999987
Q ss_pred cCCCc
Q 001041 609 EDPEG 613 (1178)
Q Consensus 609 ~~~~~ 613 (1178)
+++..
T Consensus 242 ~~~~~ 246 (258)
T PRK14268 242 HNPRE 246 (258)
T ss_pred cCCCC
Confidence 65433
No 201
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-39 Score=359.92 Aligned_cols=218 Identities=33% Similarity=0.588 Sum_probs=184.2
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCC-HHHHhcce
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ-LQWIRKKI 462 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~-~~~~r~~i 462 (1178)
++++|++++|+. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 689999999963 246999999999999999999999999999999999999999999999999998765 35678899
Q ss_pred EEEcCCCC--CCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhc
Q 001041 463 GLVSQEPV--LFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1178)
Q Consensus 463 ~~v~Q~~~--l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~ 538 (1178)
+|++|+|. ++..|++|||.++... .+.++..+. +.+.++.+ |++.........||||||||++||||++
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~laral~ 152 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKR-----VDRALAEI--GLEKYRHRSPKTLSGGQGQCVALAGILT 152 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHC--CCHHHhcCCcccCCHHHHHHHHHHHHHH
Confidence 99999985 5678999999876321 122222111 11223333 5555566677899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcC
Q 001041 539 KDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
.+|+++||||||++||+.+...+.+.++++. +++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 153 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 153 MEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999998765 47899999999999988999999999999999999988654
No 202
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-39 Score=353.47 Aligned_cols=218 Identities=22% Similarity=0.379 Sum_probs=181.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHH-Hhcc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW-IRKK 461 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~-~r~~ 461 (1178)
.++++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+... .++.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 4889999999963 46999999999999999999999999999999999999999999999999998877654 5778
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccC
Q 001041 462 IGLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1178)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~ 540 (1178)
++|++|++.+|. .|++||+.++......++....+ .+.++.++ +++.........||||||||++||||++++
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~l~~~~-~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERI-----KWVYELFP-RLHERRIQRAGTMSGGEQQMLAIGRALMSQ 155 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHH-----HHHHHHHH-HHHHHHhCchhhCCHHHHHHHHHHHHHHhC
Confidence 999999999887 59999998754322222222111 11222221 122223446678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhc
Q 001041 541 PRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVE 609 (1178)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1178)
|+|+||||||++||+.+.+.+.+.++++. +++|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 156 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 99999999999999999999999998765 4789999999999765 599999999999999999999864
No 203
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-39 Score=358.00 Aligned_cols=219 Identities=31% Similarity=0.480 Sum_probs=182.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCCcEEECCeecCC--CCH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--FQL 455 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-----~~~G~i~i~g~~~~~--~~~ 455 (1178)
.++++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 21 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 21 ILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred eEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 5899999999963 469999999999999999999999999999999999864 689999999999864 344
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCCC---CH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 001041 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA---TT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1178)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~---~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqk 528 (1178)
..++++++|++|++.+|.+|++||+.++.... .. +.+..+++..++. .++.........+||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALW-------DEVKDRLHSSALSLSGGQQ 170 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCC-------cchHHHHhcCcccCCHHHH
Confidence 56778999999999999999999998753211 11 1122222222221 1122345677789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHH
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 607 (1178)
||++||||++.+|++|||||||++||+.+...+.+.++++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998876789999999999876 5999999999999999999998
Q ss_pred hcCC
Q 001041 608 VEDP 611 (1178)
Q Consensus 608 ~~~~ 611 (1178)
..++
T Consensus 251 ~~~~ 254 (268)
T PRK14248 251 FTSP 254 (268)
T ss_pred HhCC
Confidence 7653
No 204
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-39 Score=363.67 Aligned_cols=223 Identities=28% Similarity=0.495 Sum_probs=182.4
Q ss_pred cccEEEEeEEEECCCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCC----C-
Q 001041 381 RGDIELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE----F- 453 (1178)
Q Consensus 381 ~~~i~~~~~~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~----~- 453 (1178)
.+.|+++|++++|+++. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 35699999999997432 1359999999999999999999999999999999999999999999999998752 2
Q ss_pred CHHHHhcceEEEcCCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHH
Q 001041 454 QLQWIRKKIGLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQK 528 (1178)
Q Consensus 454 ~~~~~r~~i~~v~Q~~--~l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~-t~~~~~g~~lSgGqk 528 (1178)
+...+|++|+|++|+| .+|..|++||+.++... ...++....+ .+.++.+ |+. ........+||||||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~ll~~~--~L~~~~~~~~~~~LS~Gq~ 156 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKV-----PELLKLV--QLPEDYVKRSPFELSGGQK 156 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CCChhHhcCChhhCCHHHH
Confidence 3456788999999998 46788999999875321 2222222111 1222222 332 234566788999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChh
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHS 605 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~ 605 (1178)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++
T Consensus 157 qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 236 (289)
T PRK13645 157 RRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPF 236 (289)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999988753 789999999999875 59999999999999999999
Q ss_pred HHhcC
Q 001041 606 KLVED 610 (1178)
Q Consensus 606 ~l~~~ 610 (1178)
++...
T Consensus 237 ~~~~~ 241 (289)
T PRK13645 237 EIFSN 241 (289)
T ss_pred HHhcC
Confidence 88654
No 205
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-39 Score=357.15 Aligned_cols=219 Identities=29% Similarity=0.454 Sum_probs=182.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC--CC---CCCcEEECCeecCCC--CH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY--DP---QAGEVLIDGINLKEF--QL 455 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~--~~---~~G~i~i~g~~~~~~--~~ 455 (1178)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|++ .| ++|+|.++|.++... +.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 4899999999963 36999999999999999999999999999999999985 36 489999999998643 34
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCC---CCCHH----HHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 001041 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKD---DATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1178)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~---~~~~~----~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqk 528 (1178)
..+|+.++|+||+|.+|+.|++||+.++.. ....+ ++..+++.+++.+ ++.+..+....+||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWD-------EVKDRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCch-------hHHHHHhcCcccCCHHHH
Confidence 567788999999999999999999986521 11111 2222233322211 223455677789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHH
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 607 (1178)
||++||||++.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999988776789999999999875 4999999999999999999998
Q ss_pred hcCC
Q 001041 608 VEDP 611 (1178)
Q Consensus 608 ~~~~ 611 (1178)
.+.+
T Consensus 235 ~~~~ 238 (252)
T PRK14239 235 FMNP 238 (252)
T ss_pred HhCC
Confidence 7653
No 206
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1e-39 Score=349.00 Aligned_cols=198 Identities=29% Similarity=0.519 Sum_probs=167.6
Q ss_pred EEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEE
Q 001041 386 LRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465 (1178)
Q Consensus 386 ~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v 465 (1178)
++|++++|++. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...+++++|+
T Consensus 2 ~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~ 76 (205)
T cd03226 2 IENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYV 76 (205)
T ss_pred cccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEE
Confidence 67999999641 469999999999999999999999999999999999999999999999998754 4566789999
Q ss_pred cCCC--CCCcccHHHHHhcCCCCCC--HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCC
Q 001041 466 SQEP--VLFTGSIKDNIAYGKDDAT--TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1178)
Q Consensus 466 ~Q~~--~l~~~ti~~ni~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~ 541 (1178)
+|+| .++..|++||+.++.+... .+++.++++..++. .........||||||||++||||++.+|
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~laral~~~p 145 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLY-----------ALKERHPLSLSGGQKQRLAIAAALLSGK 145 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCc-----------hhcCCCchhCCHHHHHHHHHHHHHHhCC
Confidence 9998 4678899999987643222 23444444444433 3334455689999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEE
Q 001041 542 RILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIV 599 (1178)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~ 599 (1178)
+++||||||++||+.+.+.+.+.++++. +++|+|++||+++.+.. ||+|++|++|+++
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 146 DLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999998874 57899999999999875 9999999999975
No 207
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-39 Score=358.94 Aligned_cols=220 Identities=27% Similarity=0.490 Sum_probs=184.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++++|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+++
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 48999999999743 24699999999999999999999999999999999999999999999999999888888888899
Q ss_pred EEEcCCCC--CCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhc
Q 001041 463 GLVSQEPV--LFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1178)
Q Consensus 463 ~~v~Q~~~--l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~ 538 (1178)
+|++|+|. ++..|+++|+.++... ...++..+. +.+.++.+ |+.........+||||||||++||||++
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral~ 158 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRR-----VSEALKQV--DMLERADYEPNALSGGQKQRVAIAGVLA 158 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHH-----HHHHHHHc--CCchhhhCCcccCCHHHHHHHHHHHHHH
Confidence 99999995 4567899999876322 122222111 11122222 3333445566789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcC
Q 001041 539 KDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
.+|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 159 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 159 LNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999988753 6899999999999888999999999999999999988654
No 208
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-39 Score=348.93 Aligned_cols=203 Identities=27% Similarity=0.501 Sum_probs=172.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
|+++|++++|++ .++++|+||++++| +++|+||||||||||+++|.|+++|++|+|.++|.++...+ ..+|++++
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 478999999963 36999999999999 99999999999999999999999999999999999988766 66788999
Q ss_pred EEcCCCCCCcc-cHHHHHhcCCC--CCC----HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHH
Q 001041 464 LVSQEPVLFTG-SIKDNIAYGKD--DAT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1178)
Q Consensus 464 ~v~Q~~~l~~~-ti~~ni~~~~~--~~~----~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARa 536 (1178)
|++|+|.+|.. |++||+.+... ..+ .+++.++++..++. ........+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~la~a 144 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLG-----------DRAKKKIGSLSGGMRRRVGIAQA 144 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCH-----------HHHhCchhhCCHHHHHHHHHHHH
Confidence 99999998875 99999986321 111 12233334443333 22334556899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhh-ccCEEEEEeCCEEEEec
Q 001041 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g 602 (1178)
++++|+++||||||++||+.+.+.+.+.++++.+++|+|++||+++.+. .||++++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999998877799999999999986 49999999999998765
No 209
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-39 Score=361.31 Aligned_cols=217 Identities=26% Similarity=0.488 Sum_probs=183.9
Q ss_pred cEEEEeEEEECCCCC---CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCC-HHHH
Q 001041 383 DIELRDVYFSYPARP---NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ-LQWI 458 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~---~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~-~~~~ 458 (1178)
.++++|++++|++.. .+++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|.++.+.. ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 489999999997421 246999999999999999999999999999999999999999999999999987654 3557
Q ss_pred hcceEEEcCCCC--CCcccHHHHHhcCCCC--CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHH
Q 001041 459 RKKIGLVSQEPV--LFTGSIKDNIAYGKDD--ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1178)
Q Consensus 459 r~~i~~v~Q~~~--l~~~ti~~ni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqr 530 (1178)
|++++|+||+|. ++..|+.+|+.|+... .+. +++..+++.+ |++........+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------gL~~~~~~~~~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKV-----------GMYEYRRHAPHLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHC-----------CCHhHhhCCcccCCHHHHHH
Confidence 889999999984 6777999999986321 122 2233333333 44444555667999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHh
Q 001041 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLV 608 (1178)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 608 (1178)
++||||++++|+++||||||++||+.+...+.+.++++.+ ++|+|++||+++.+..||++++|++|++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999999999999988753 78999999999998889999999999999999999987
Q ss_pred cC
Q 001041 609 ED 610 (1178)
Q Consensus 609 ~~ 610 (1178)
..
T Consensus 233 ~~ 234 (280)
T PRK13633 233 KE 234 (280)
T ss_pred cC
Confidence 54
No 210
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=2.3e-39 Score=350.87 Aligned_cols=209 Identities=29% Similarity=0.523 Sum_probs=173.7
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHH---Hh
Q 001041 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW---IR 459 (1178)
Q Consensus 384 i~~~~~~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~---~r 459 (1178)
++++|++++|++.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999996422 246999999999999999999999999999999999999999999999999998876544 33
Q ss_pred -cceEEEcCCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHH
Q 001041 460 -KKIGLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1178)
Q Consensus 460 -~~i~~v~Q~~~l~~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lAR 535 (1178)
++++|++|+|.+|. .|++||+.++.. ....++..+ .+.+.++.+ |++.........||||||||++|||
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~lar 154 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKE-----RAYEMLEKV--GLEHRINHRPSELSGGERQRVAIAR 154 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHH
Confidence 67999999998884 699999987421 112111111 112333333 5555566677899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhccCEEEEEeCCEEE
Q 001041 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIV 599 (1178)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~ 599 (1178)
|++++|++|||||||++||+++.+.+.+.|+++.+ ++|+|++||+++.+..+|+|++|++|+++
T Consensus 155 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 155 ALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999988753 68999999999999889999999999985
No 211
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=6e-39 Score=351.90 Aligned_cols=217 Identities=31% Similarity=0.551 Sum_probs=183.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCC--CHHHHhcc
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF--QLQWIRKK 461 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~--~~~~~r~~ 461 (1178)
++++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++... +...+|++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 689999999963 4699999999999999999999999999999999999999999999999998764 33566788
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHh
Q 001041 462 IGLVSQEPVLFT-GSIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1178)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal 537 (1178)
++|++|++.++. .|++||+.++.. ..+.++..+ .+.+.++.+ |++.........||||||||++||||+
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al 151 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEK-----QARELLAKV--GLAERAHHYPSELSGGQQQRVAIARAL 151 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH-----HHHHHHHHc--CChHHHhcChhhcCHHHHHHHHHHHHH
Confidence 999999998885 699999987531 112222111 122344443 666666777789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 538 LKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
+++|+++||||||++||+++...+.+.++++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 152 AVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 99999999999999999999999999998765 47899999999999865 999999999999999999988764
No 212
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-39 Score=355.51 Aligned_cols=222 Identities=29% Similarity=0.474 Sum_probs=183.9
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC--C---CCCcEEECCeecCCC--C
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD--P---QAGEVLIDGINLKEF--Q 454 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~--~---~~G~i~i~g~~~~~~--~ 454 (1178)
+.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++ | ++|+|.++|.++... +
T Consensus 3 ~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 3 NKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred cEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 56999999999963 469999999999999999999999999999999999986 3 589999999998643 4
Q ss_pred HHHHhcceEEEcCCCCCCc-ccHHHHHhcCCCC---CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChH
Q 001041 455 LQWIRKKIGLVSQEPVLFT-GSIKDNIAYGKDD---ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1178)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~-~ti~~ni~~~~~~---~~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgG 526 (1178)
...+|++++|+||++.+|. .|++||+.++... .+. +++.+.++..++.+.+ ....+....+||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G 152 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEV-------KDRLKSNAMELSGG 152 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hHHhhCCcCcCCHH
Confidence 4567889999999999887 6999999864211 111 2223333333322211 22345667889999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChh
Q 001041 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHS 605 (1178)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~ 605 (1178)
||||++||||++.+|+++||||||++||+.+.+.+.+.++++.+++|+|++||+++.+. .||++++|++|++++.|+++
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETK 232 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999998877789999999999985 59999999999999999999
Q ss_pred HHhcCCCc
Q 001041 606 KLVEDPEG 613 (1178)
Q Consensus 606 ~l~~~~~~ 613 (1178)
++...+..
T Consensus 233 ~~~~~~~~ 240 (252)
T PRK14256 233 KIFTTPEK 240 (252)
T ss_pred HHHhCCCc
Confidence 98765443
No 213
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-39 Score=356.24 Aligned_cols=220 Identities=31% Similarity=0.461 Sum_probs=185.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCCcEEECCeecCC--CCH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--FQL 455 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-----~~~G~i~i~g~~~~~--~~~ 455 (1178)
.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 4899999999963 369999999999999999999999999999999999976 378999999998853 455
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCCC--C---HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHH
Q 001041 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA--T---TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1178)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~--~---~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqr 530 (1178)
..+|++++|++|++.+|+.|++||+.++.... . ++++..+++.+++.+++ +......+.+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEV-------KDKLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhH-------HHHhcCCcccCCHHHHHH
Confidence 67788999999999999889999998754211 1 12233344444443332 223466778999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEe---------CCEEEE
Q 001041 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIH---------RGKIVE 600 (1178)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~---------~G~i~~ 600 (1178)
++||||++++|++|||||||++||+.+...+.+.++++.+++|+|++||+++.+.. ||+|++|+ +|++++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~ 239 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999988777899999999998765 99999998 899999
Q ss_pred ecChhHHhcCCC
Q 001041 601 KGTHSKLVEDPE 612 (1178)
Q Consensus 601 ~g~~~~l~~~~~ 612 (1178)
.|+++++.+.+.
T Consensus 240 ~~~~~~~~~~~~ 251 (264)
T PRK14243 240 FDRTEKIFNSPQ 251 (264)
T ss_pred eCCHHHHHhCCC
Confidence 999999976543
No 214
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-39 Score=360.28 Aligned_cols=217 Identities=31% Similarity=0.556 Sum_probs=185.9
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCC---CcEEECCeecCCCCHHHH
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA---GEVLIDGINLKEFQLQWI 458 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~---G~i~i~g~~~~~~~~~~~ 458 (1178)
+.|+++|++++|+.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++...+...+
T Consensus 4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 358999999999643 2469999999999999999999999999999999999999987 899999999987777778
Q ss_pred hcceEEEcCCCC--CCcccHHHHHhcCCCC--CCHHH----HHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHH
Q 001041 459 RKKIGLVSQEPV--LFTGSIKDNIAYGKDD--ATTEE----IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1178)
Q Consensus 459 r~~i~~v~Q~~~--l~~~ti~~ni~~~~~~--~~~~~----~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqr 530 (1178)
+++++|++|+|. ++..|++|||.++... .+.++ +..+++.+ |++........+||||||||
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~-----------~L~~~~~~~~~~LS~G~~qr 151 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADV-----------GMLDYIDSEPANLSGGQKQR 151 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHC-----------CChhHhcCCcccCCHHHHHH
Confidence 889999999994 6689999999876322 22322 23333333 44444566668999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHh
Q 001041 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLV 608 (1178)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 608 (1178)
++||||++.+|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+..||++++|++|++++.|+++++.
T Consensus 152 v~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999999988753 78999999999999889999999999999999999886
Q ss_pred cC
Q 001041 609 ED 610 (1178)
Q Consensus 609 ~~ 610 (1178)
..
T Consensus 232 ~~ 233 (282)
T PRK13640 232 SK 233 (282)
T ss_pred cC
Confidence 54
No 215
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2.9e-39 Score=352.16 Aligned_cols=214 Identities=25% Similarity=0.496 Sum_probs=178.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHH-Hhcce
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW-IRKKI 462 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~-~r~~i 462 (1178)
++++|+++.|++ .++|+|+||++++||+++|+|+||||||||+++|.|+++|++|+|.++|.++...+... .+.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 468999999963 36999999999999999999999999999999999999999999999999998877654 46689
Q ss_pred EEEcCCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCC
Q 001041 463 GLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1178)
Q Consensus 463 ~~v~Q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~ 541 (1178)
+|++|++.+|.. |++||+.++.......+... ..+.++.+ ++++........+||||||||++||||++++|
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~------~~~~l~~~-~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 150 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKI------PDEIYELF-PVLKEMLGRRGGDLSGGQQQQLAIARALVTRP 150 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHH------HHHHHHHH-HhHHHHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 999999998875 99999987543221110000 01111111 12334456667789999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHH
Q 001041 542 RILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1178)
+++||||||++||+.+.+.+.+.+.+..+ ++|+|++||+++.+.. ||+|+++++|++++.|+++++
T Consensus 151 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 151 KLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999988754 6899999999999875 999999999999999999887
No 216
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-39 Score=371.63 Aligned_cols=209 Identities=34% Similarity=0.560 Sum_probs=174.1
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHH----hcceEEEcCCCCCCc-c
Q 001041 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI----RKKIGLVSQEPVLFT-G 474 (1178)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~----r~~i~~v~Q~~~l~~-~ 474 (1178)
.+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+.+...+ |++++||+|++.+|. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 37999999999999999999999999999999999999999999999999988876553 357999999999885 6
Q ss_pred cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCC
Q 001041 475 SIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 552 (1178)
Q Consensus 475 ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~ 552 (1178)
|++||+.++... ...++..+ .+.+.++.+ |++........+||||||||++|||||+.+|++|||||||++
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~-----~~~e~L~~~--gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~ 194 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERRE-----KALDALRQV--GLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSA 194 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCcc
Confidence 999999976321 12211111 112223332 444455566679999999999999999999999999999999
Q ss_pred CCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcCCCchH
Q 001041 553 LDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615 (1178)
Q Consensus 553 lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 615 (1178)
||+.+.+.+++.+.++. .++|+|+|||+++.+. .||+|++|++|++++.|+++++..++...|
T Consensus 195 LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~ 260 (400)
T PRK10070 195 LDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDY 260 (400)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHH
Confidence 99999999999998874 3789999999999875 599999999999999999999987654444
No 217
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-39 Score=361.45 Aligned_cols=221 Identities=29% Similarity=0.548 Sum_probs=183.0
Q ss_pred cEEEEeEEEECCCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCC----CHH
Q 001041 383 DIELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF----QLQ 456 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~----~~~ 456 (1178)
.|+++|++++|+... .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996321 14699999999999999999999999999999999999999999999999998653 245
Q ss_pred HHhcceEEEcCCC--CCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHHHHH
Q 001041 457 WIRKKIGLVSQEP--VLFTGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRI 531 (1178)
Q Consensus 457 ~~r~~i~~v~Q~~--~l~~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~-t~~~~~g~~lSgGqkqri 531 (1178)
..+..++|++|+| .+|..|++|||.++.. ....++... .+.+.++.+ |++ ........+||||||||+
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrl 154 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKE-----KALKWLKKV--GLSEDLISKSPFELSGGQMRRV 154 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCChhHhhCCcccCCHHHHHHH
Confidence 6678899999998 5778899999987532 122222211 112333333 554 345667789999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhc
Q 001041 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVE 609 (1178)
Q Consensus 532 ~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1178)
+||||++.+|++|||||||++||+.+.+.+.+.++++. ++.|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 155 ~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 155 AIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998875 4789999999999886 599999999999999999998865
Q ss_pred C
Q 001041 610 D 610 (1178)
Q Consensus 610 ~ 610 (1178)
.
T Consensus 235 ~ 235 (287)
T PRK13641 235 D 235 (287)
T ss_pred C
Confidence 3
No 218
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=4.1e-39 Score=355.73 Aligned_cols=219 Identities=32% Similarity=0.540 Sum_probs=183.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCC---------
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ--------- 454 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~--------- 454 (1178)
|+++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 478999999963 46999999999999999999999999999999999999999999999999887543
Q ss_pred ----HHHHhcceEEEcCCCCCC-cccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChH
Q 001041 455 ----LQWIRKKIGLVSQEPVLF-TGSIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1178)
Q Consensus 455 ----~~~~r~~i~~v~Q~~~l~-~~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgG 526 (1178)
...+|+.++|++|++.+| ..|++||+.++.. ....++... .+.+.++.+ |++........+||||
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G 150 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEK-----RAMELLDMV--GLADKADHMPAQLSGG 150 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhHhhcChhhcCHH
Confidence 235678899999999888 4899999987421 112221111 123344444 5565667777899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecC
Q 001041 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGT 603 (1178)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~ 603 (1178)
||||++||||++++|+++||||||++||+.+...+.+.++++.+ ++|+|++||+++.+. .||++++|++|++++.|+
T Consensus 151 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~ 230 (252)
T TIGR03005 151 QQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGK 230 (252)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999988753 789999999999985 599999999999999999
Q ss_pred hhHHhcCCC
Q 001041 604 HSKLVEDPE 612 (1178)
Q Consensus 604 ~~~l~~~~~ 612 (1178)
++++.+.+.
T Consensus 231 ~~~~~~~~~ 239 (252)
T TIGR03005 231 PDEIFRQPK 239 (252)
T ss_pred HHHHhcCCC
Confidence 999876543
No 219
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=3.9e-39 Score=357.91 Aligned_cols=220 Identities=31% Similarity=0.475 Sum_probs=182.0
Q ss_pred EEEEeEEEECCCC------CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHH
Q 001041 384 IELRDVYFSYPAR------PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW 457 (1178)
Q Consensus 384 i~~~~~~~~y~~~------~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~ 457 (1178)
|+++|+++.|+.. .++++|+|+||++++||+++|+|+||||||||+++|.|+++|++|+|.++|.++...+...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999632 1357999999999999999999999999999999999999999999999999998776543
Q ss_pred ---HhcceEEEcCCCC--CC-cccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHH
Q 001041 458 ---IRKKIGLVSQEPV--LF-TGSIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQ 527 (1178)
Q Consensus 458 ---~r~~i~~v~Q~~~--l~-~~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~g~~-t~~~~~g~~lSgGq 527 (1178)
+|+.|+|++|+|. ++ ..|++||+.++.. ....++.. ..+.+.++.+ |++ ........+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~~LSgGe 155 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQK-----ARIAELLDMV--GLRSEDADKLPRQLSGGQ 155 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCChhhhhCChhhCCHHH
Confidence 5778999999983 44 4799999975321 11111111 1122334443 554 34566778999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecCh
Q 001041 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTH 604 (1178)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~ 604 (1178)
|||++||||++.+|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+. .||++++|++|++++.|++
T Consensus 156 ~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~ 235 (265)
T TIGR02769 156 LQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDV 235 (265)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCH
Confidence 9999999999999999999999999999999999999988754 789999999999987 4999999999999999999
Q ss_pred hHHhcC
Q 001041 605 SKLVED 610 (1178)
Q Consensus 605 ~~l~~~ 610 (1178)
+++...
T Consensus 236 ~~~~~~ 241 (265)
T TIGR02769 236 AQLLSF 241 (265)
T ss_pred HHHcCC
Confidence 999864
No 220
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=3.8e-39 Score=355.95 Aligned_cols=219 Identities=33% Similarity=0.567 Sum_probs=183.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCC--------
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ-------- 454 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~-------- 454 (1178)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (250)
T PRK11264 3 AIEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL 79 (250)
T ss_pred cEEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhH
Confidence 3889999999963 36999999999999999999999999999999999999999999999999986542
Q ss_pred HHHHhcceEEEcCCCCCCc-ccHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHH
Q 001041 455 LQWIRKKIGLVSQEPVLFT-GSIKDNIAYGK---DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1178)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~-~ti~~ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqr 530 (1178)
...+|++++|+||++.+|. .|++||+.++. .....++..+ .+.+.++.+ |++........+||||||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~Gq~qr 152 (250)
T PRK11264 80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATA-----RARELLAKV--GLAGKETSYPRRLSGGQQQR 152 (250)
T ss_pred HHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCcchhhCChhhCChHHHHH
Confidence 3456788999999998885 79999998642 1112221111 122334443 55555667778999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc-CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHh
Q 001041 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608 (1178)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 608 (1178)
++||||++.+|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 153 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 153 VAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999999988754 7899999999999865 9999999999999999999987
Q ss_pred cCC
Q 001041 609 EDP 611 (1178)
Q Consensus 609 ~~~ 611 (1178)
+.+
T Consensus 233 ~~~ 235 (250)
T PRK11264 233 ADP 235 (250)
T ss_pred cCC
Confidence 653
No 221
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-39 Score=357.87 Aligned_cols=220 Identities=31% Similarity=0.528 Sum_probs=181.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCCcEEECCeecCCCC--HH
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKEFQ--LQ 456 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-----~~~G~i~i~g~~~~~~~--~~ 456 (1178)
-+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++ |.+|+|.++|.++...+ ..
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 468999999963 469999999999999999999999999999999999986 46999999999886543 34
Q ss_pred HHhcceEEEcCCCCCCcccHHHHHhcCCC--CC--CH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 001041 457 WIRKKIGLVSQEPVLFTGSIKDNIAYGKD--DA--TT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1178)
Q Consensus 457 ~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~--~~--~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqk 528 (1178)
.+|++++|++|++.+|.+|++||+.++.. .. .. +++..+++..++.+. +.+.++..+.+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEE-------LGDRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCch-------hhhHhhcChhhCCHHHH
Confidence 56889999999999998999999987521 11 11 112222222222111 12345667789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHH
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1178)
||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999888778999999999999865 999999999999999999998
Q ss_pred hcCCCc
Q 001041 608 VEDPEG 613 (1178)
Q Consensus 608 ~~~~~~ 613 (1178)
.+.+..
T Consensus 236 ~~~~~~ 241 (251)
T PRK14244 236 FKNPQS 241 (251)
T ss_pred hcCCCC
Confidence 766433
No 222
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-39 Score=355.08 Aligned_cols=219 Identities=29% Similarity=0.490 Sum_probs=184.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCcEEECCeecCCC--CH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKEF--QL 455 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~~--~~ 455 (1178)
.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|.|+.+| ++|+|.++|.++... +.
T Consensus 6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 4899999999963 4699999999999999999999999999999999998753 489999999998765 45
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCCC---CHH----HHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 001041 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA---TTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1178)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~---~~~----~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqk 528 (1178)
...|+.++|++|+|.+|+.|++||+.++.... ... ++.++++..+ +.+++.+..++.+.+||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~l~~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAA-------LWDEVKDRLHDSALSLSGGQQ 155 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhc-------CchhhHHHhhcChhhCCHHHH
Confidence 66788899999999999899999999763211 111 1222222222 222334556778889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHH
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 607 (1178)
||++||||++.+|+++||||||++||+.+.+.+.+.++++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 999999999999999999999999999999999999998877789999999999986 4999999999999999999998
Q ss_pred hcCC
Q 001041 608 VEDP 611 (1178)
Q Consensus 608 ~~~~ 611 (1178)
..++
T Consensus 236 ~~~~ 239 (253)
T PRK14261 236 FENP 239 (253)
T ss_pred HhCC
Confidence 7653
No 223
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-39 Score=358.30 Aligned_cols=213 Identities=28% Similarity=0.472 Sum_probs=182.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+.+
T Consensus 11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 5899999999963 3699999999999999999999999999999999999999999999999999888888888899
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCCC----------CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHH
Q 001041 463 GLVSQEPVLFT-GSIKDNIAYGKDDA----------TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1178)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~ni~~~~~~~----------~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri 531 (1178)
+|++|++.++. .|++||+.++.... .++++..+++.+++ +........+||||||||+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgG~~qrv 156 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGL-----------KPLAHRLVDSLSGGERQRA 156 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCC-----------HHHhcCCcccCCHHHHHHH
Confidence 99999987654 59999998753210 11233344444433 3334445568999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHh
Q 001041 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLV 608 (1178)
Q Consensus 532 ~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 608 (1178)
+||||++.+|++|||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 999999999999999999999999999999999988753 789999999999986 59999999999999999998875
Q ss_pred c
Q 001041 609 E 609 (1178)
Q Consensus 609 ~ 609 (1178)
.
T Consensus 237 ~ 237 (265)
T PRK10575 237 R 237 (265)
T ss_pred C
Confidence 4
No 224
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=4.4e-39 Score=356.33 Aligned_cols=219 Identities=31% Similarity=0.545 Sum_probs=182.6
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCC--------
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF-------- 453 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~-------- 453 (1178)
+.++++|+++.|++ .++|+|+||++++||+++|+|+||||||||+++|.|+++|++|+|.++|.++...
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 56999999999963 4699999999999999999999999999999999999999999999999988642
Q ss_pred -----CHHHHhcceEEEcCCCCCCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccchh-cCCCCCC
Q 001041 454 -----QLQWIRKKIGLVSQEPVLFT-GSIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDTLV-GEHGTQL 523 (1178)
Q Consensus 454 -----~~~~~r~~i~~v~Q~~~l~~-~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~-~~~g~~l 523 (1178)
....+|++++|+||++.++. .|++||+.++.. .....+... .+.+.++.+ |+.... ......|
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~~L 153 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARE-----RAVKYLAKV--GIDERAQGKYPVHL 153 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHH-----HHHHHHHHc--CCChhhhhCCcccC
Confidence 13456789999999999986 599999986421 111111111 112333333 454443 5667899
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEe
Q 001041 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEK 601 (1178)
Q Consensus 524 SgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~ 601 (1178)
|||||||++||||++++|+++||||||++||+.+.+.+.+.++++. +++|+|+|||+++.+.. ||+|++|++|++++.
T Consensus 154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 233 (257)
T PRK10619 154 SGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE 233 (257)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999998875 47999999999999885 999999999999999
Q ss_pred cChhHHhcC
Q 001041 602 GTHSKLVED 610 (1178)
Q Consensus 602 g~~~~l~~~ 610 (1178)
|+++++.+.
T Consensus 234 ~~~~~~~~~ 242 (257)
T PRK10619 234 GAPEQLFGN 242 (257)
T ss_pred CCHHHhhhC
Confidence 999998754
No 225
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-39 Score=355.40 Aligned_cols=219 Identities=33% Similarity=0.525 Sum_probs=182.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCcEEECCeecCCC--CH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKEF--QL 455 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~~--~~ 455 (1178)
.|+++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++... +.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 4889999999963 4699999999999999999999999999999999999874 899999999988653 34
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCC---CCHHH----HHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 001041 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD---ATTEE----IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1178)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~---~~~~~----~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqk 528 (1178)
..+++.++|++|+|.+|..|++||+.++... ...++ +..+++..++.+. ++........+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDE-------VKSELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCch-------hHHHHhCChhhcCHHHH
Confidence 4567889999999999999999999875311 11111 2223333222211 12345677789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHH
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 607 (1178)
||++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI 232 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999999999999998877889999999999875 5999999999999999999998
Q ss_pred hcCC
Q 001041 608 VEDP 611 (1178)
Q Consensus 608 ~~~~ 611 (1178)
.+.+
T Consensus 233 ~~~~ 236 (250)
T PRK14262 233 VERP 236 (250)
T ss_pred HhCC
Confidence 7653
No 226
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=2.9e-39 Score=346.48 Aligned_cols=203 Identities=26% Similarity=0.458 Sum_probs=173.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++... ...+++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 468999999963 4699999999999999999999999999999999999999999999999988654 45677899
Q ss_pred EEcCCCCCC-cccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccC
Q 001041 464 LVSQEPVLF-TGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1178)
Q Consensus 464 ~v~Q~~~l~-~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~ 540 (1178)
|+||++.++ ..|++||+.++.. ..+++++.++++..++. .........||||||||++||||++.+
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~la~al~~~ 144 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLK-----------DSAKKKVKGFSLGMKQRLGIALALLGN 144 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCH-----------HHHhhhHhhCCHHHHHHHHHHHHHhcC
Confidence 999999887 5799999987532 12344455555554443 334455678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEec
Q 001041 541 PRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1178)
|+++||||||++||+.+.+.+.+.+++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999998765 47899999999999865 9999999999998765
No 227
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-39 Score=360.99 Aligned_cols=220 Identities=33% Similarity=0.576 Sum_probs=182.9
Q ss_pred EEEEeEEEECCCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCC----CHHH
Q 001041 384 IELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF----QLQW 457 (1178)
Q Consensus 384 i~~~~~~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~----~~~~ 457 (1178)
++++|++++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997432 13699999999999999999999999999999999999999999999999998754 3456
Q ss_pred HhcceEEEcCCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHHHHHH
Q 001041 458 IRKKIGLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRIA 532 (1178)
Q Consensus 458 ~r~~i~~v~Q~~--~l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~-t~~~~~g~~lSgGqkqri~ 532 (1178)
+|+.|+|++|+| .+|..|++||+.++... .+.++.... +.+.++.+ |++ ........+||||||||++
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ 155 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEAL-----AREKLALV--GISESLFEKNPFELSGGQMRRVA 155 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 788999999998 67889999999875321 223222211 12223332 454 2346667889999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc-CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 533 lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
||||++.+|++|||||||++||+++.+.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 235 (280)
T PRK13649 156 IAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD 235 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999999988753 7899999999998864 999999999999999999988654
No 228
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.1e-39 Score=357.01 Aligned_cols=222 Identities=27% Similarity=0.469 Sum_probs=184.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCCcEEECCeecCC--CCH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--FQL 455 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-----~~~G~i~i~g~~~~~--~~~ 455 (1178)
.++++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++ |++|+|.++|.++.. .+.
T Consensus 24 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 24 VFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 5999999999963 359999999999999999999999999999999999987 699999999999853 345
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCC--CCCHH-HHHHHHHHhcHHHHHHhC--CCCccchhcCCCCCCChHHHHH
Q 001041 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKD--DATTE-EIRVATELANAAKFIDKL--PQGIDTLVGEHGTQLSGGQKQR 530 (1178)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~--~~~~~-~~~~~~~~~~~~~~i~~~--~~g~~t~~~~~g~~lSgGqkqr 530 (1178)
..++++++|++|+|.+|..|++||+.++.. ...++ ..... +.+.++.+ .+++.......+.+||||||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qr 175 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEI-----VEKSLRGAAIWDELKDRLHDNAYGLSGGQQQR 175 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHH-----HHHHHHHcCCcchHHHHHhcCcccCCHHHHHH
Confidence 567889999999999998999999987532 11111 11111 11111111 1234445677788999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhc
Q 001041 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1178)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 609 (1178)
++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 176 v~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 255 (271)
T PRK14238 176 LCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFS 255 (271)
T ss_pred HHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 99999999999999999999999999999999999888778999999999999865 99999999999999999999876
Q ss_pred CCC
Q 001041 610 DPE 612 (1178)
Q Consensus 610 ~~~ 612 (1178)
++.
T Consensus 256 ~~~ 258 (271)
T PRK14238 256 NPS 258 (271)
T ss_pred CCC
Confidence 543
No 229
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-39 Score=354.45 Aligned_cols=219 Identities=32% Similarity=0.488 Sum_probs=183.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCcEEECCeecCCC--CH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKEF--QL 455 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~~--~~ 455 (1178)
.++++|+++.|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 5889999999963 4699999999999999999999999999999999999875 789999999998653 34
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCCC---CH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 001041 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA---TT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1178)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~---~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqk 528 (1178)
...|++++|+||++.+|..|++||+.++.... +. +++.++++.+++.+ ++..........||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWD-------EVKDDLKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCch-------hhhhHhhCCcccCCHHHH
Confidence 56688899999999999999999998753211 11 12233333333221 223345567789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHH
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1178)
||++||||++++|+++||||||++||+.+...+.+.++++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988777899999999998865 999999999999999999998
Q ss_pred hcCC
Q 001041 608 VEDP 611 (1178)
Q Consensus 608 ~~~~ 611 (1178)
...+
T Consensus 234 ~~~~ 237 (251)
T PRK14270 234 FLEP 237 (251)
T ss_pred hcCC
Confidence 7653
No 230
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-39 Score=349.28 Aligned_cols=209 Identities=25% Similarity=0.431 Sum_probs=175.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++... ...++++++
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEE
Confidence 478999999963 4699999999999999999999999999999999999999999999999988653 345677899
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCC--CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHH
Q 001041 464 LVSQEPVLFT-GSIKDNIAYGKDD--ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1178)
Q Consensus 464 ~v~Q~~~l~~-~ti~~ni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARa 536 (1178)
|++|++.++. .|++||+.++... .+. +++.+.++.. |++........+||||||||++||||
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qr~~la~a 145 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFV-----------GLLEAADRLVKTYSGGMRRRLEIARS 145 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-----------CCHHHhhCChhhCCHHHHHHHHHHHH
Confidence 9999998886 5999999864211 111 2223333333 33333444557899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHH
Q 001041 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1178)
++.+|+++||||||++||+++...+.+.++++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999999999999988653 6899999999999865 999999999999999988764
No 231
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=3.6e-39 Score=368.60 Aligned_cols=212 Identities=28% Similarity=0.458 Sum_probs=174.1
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCe----ecCCCCHHHH---h-cceEEEcCCCC
Q 001041 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGI----NLKEFQLQWI---R-KKIGLVSQEPV 470 (1178)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~----~~~~~~~~~~---r-~~i~~v~Q~~~ 470 (1178)
..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++...+...+ | ++|+||+|++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 45899999999999999999999999999999999999999999999996 5666665544 3 57999999999
Q ss_pred CCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 001041 471 LFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLD 547 (1178)
Q Consensus 471 l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlD 547 (1178)
+|+ .|++||+.++... .+.++... .+.+.++.+ |++........+||||||||++|||||+.+|+|||||
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~-----~a~e~le~v--gL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlD 189 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRK-----RVDEQLELV--GLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMD 189 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 996 7999999986421 12221111 112223332 4444455566789999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcCCCchHHH
Q 001041 548 EATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617 (1178)
Q Consensus 548 e~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 617 (1178)
||||+||+.+.+.+++.+.++.+ ++|+|+|||+++.+. .||+|++|++|++++.|++++++.++...|.+
T Consensus 190 EPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~~~ 262 (382)
T TIGR03415 190 EPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVA 262 (382)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHHHH
Confidence 99999999999999999988754 789999999999874 59999999999999999999998765444443
No 232
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6e-39 Score=358.29 Aligned_cols=215 Identities=31% Similarity=0.532 Sum_probs=183.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++++|+.+ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++++
T Consensus 3 ~l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 80 (277)
T PRK13652 3 LIETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV 80 (277)
T ss_pred eEEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 37899999999632 3599999999999999999999999999999999999999999999999999877777788899
Q ss_pred EEEcCCC--CCCcccHHHHHhcCCC--CCCHH----HHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHH
Q 001041 463 GLVSQEP--VLFTGSIKDNIAYGKD--DATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1178)
Q Consensus 463 ~~v~Q~~--~l~~~ti~~ni~~~~~--~~~~~----~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lA 534 (1178)
+|++|+| .++..|++||+.++.. ..+.+ ++..+++.. |+..........||||||||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~Gq~qrl~la 149 (277)
T PRK13652 81 GLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHML-----------GLEELRDRVPHHLSGGEKKRVAIA 149 (277)
T ss_pred EEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHC-----------CChhHhcCCcccCCHHHHHHHHHH
Confidence 9999998 3678899999986532 12222 223333333 333344555678999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcC
Q 001041 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
||++.+|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 150 raL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 150 GVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 999999999999999999999999999999988753 789999999999985 5999999999999999999998754
No 233
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-39 Score=363.54 Aligned_cols=230 Identities=31% Similarity=0.483 Sum_probs=186.4
Q ss_pred cEEEEeEEEECCCCC-------CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCH
Q 001041 383 DIELRDVYFSYPARP-------NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL 455 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~-------~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~ 455 (1178)
.|+++|++++|+.+. ...+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 489999999996421 2469999999999999999999999999999999999999999999999999988865
Q ss_pred H---HHhcceEEEcCCCC--CCc-ccHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCCh
Q 001041 456 Q---WIRKKIGLVSQEPV--LFT-GSIKDNIAYGK---DDATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSG 525 (1178)
Q Consensus 456 ~---~~r~~i~~v~Q~~~--l~~-~ti~~ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~g~~-t~~~~~g~~lSg 525 (1178)
. .+|++|+||+|+|. ++. .|+.+|+..+. .....++.. ..+.+.++.+ |++ .........|||
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gL~~~~~~~~p~~LSg 157 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERR-----EKALAMMAKV--GLRPEHYDRYPHMFSG 157 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHH-----HHHHHHHHHC--CCChHHhcCCCccCCH
Confidence 3 46788999999993 443 58988886321 111221111 1112233332 332 233556678999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEec
Q 001041 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 526 Gqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1178)
|||||++|||||+.+|++||+||||++||+.+.+.+.+.++++.+ +.|+|+|||+++.+.. ||+|++|++|+|+|.|
T Consensus 158 Gq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g 237 (327)
T PRK11308 158 GQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKG 237 (327)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999988754 7899999999999975 9999999999999999
Q ss_pred ChhHHhcCCCchHHHHH
Q 001041 603 THSKLVEDPEGAYSQLI 619 (1178)
Q Consensus 603 ~~~~l~~~~~~~~~~~~ 619 (1178)
+.+++.+++...|.+.+
T Consensus 238 ~~~~~~~~p~hpyt~~l 254 (327)
T PRK11308 238 TKEQIFNNPRHPYTQAL 254 (327)
T ss_pred CHHHHhcCCCCHHHHHH
Confidence 99999987666676543
No 234
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=5.7e-39 Score=352.77 Aligned_cols=221 Identities=25% Similarity=0.455 Sum_probs=185.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHH-hcce
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI-RKKI 462 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~-r~~i 462 (1178)
|+++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+.... +..+
T Consensus 3 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 3 LYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred EEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 789999999963 369999999999999999999999999999999999999999999999999887776543 4579
Q ss_pred EEEcCCCCCCcc-cHHHHHhcCCCCCCH--HH---HHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHH
Q 001041 463 GLVSQEPVLFTG-SIKDNIAYGKDDATT--EE---IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1178)
Q Consensus 463 ~~v~Q~~~l~~~-ti~~ni~~~~~~~~~--~~---~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARa 536 (1178)
+|++|++.+|.+ |++||+.++...... .. .........+.+.++.+ |++........+||||||||++||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv~lara 157 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLADEADRLAGLLSHGQKQWLEIGML 157 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHH
Confidence 999999999975 999999875321000 00 00001111233444444 56666677778999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhc
Q 001041 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1178)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 609 (1178)
++.+|+++||||||++||+.+.+.+.+.++++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 158 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 158 LMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred HhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 99999999999999999999999999999988777899999999999875 99999999999999999988864
No 235
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=7.1e-39 Score=345.94 Aligned_cols=210 Identities=31% Similarity=0.481 Sum_probs=184.5
Q ss_pred EEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCH----HHHhc
Q 001041 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL----QWIRK 460 (1178)
Q Consensus 385 ~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~----~~~r~ 460 (1178)
.+.|++|+|+.+ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ...|.
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 467899999743 469999999999999999999999999999999999999999999999998876542 23567
Q ss_pred ceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccC
Q 001041 461 KIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1178)
Q Consensus 461 ~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~ 540 (1178)
.++|++|+|.+|+.|++||+.++.+ ...++..++++.+++.+.+..+|.|+++.++....+||||||||++||||++.+
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 158 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQN 158 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCc-CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhC
Confidence 8999999999999999999998653 345566778888888888888999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHH--HHHHHh-cCCeEEEEecCcchhhccCEEEEEeCCE
Q 001041 541 PRILLLDEATSALDAESEKVVQE--ALDRIM-VNRTTVIVAHRLSTVRNADMIAVIHRGK 597 (1178)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~--~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~ 597 (1178)
|+++||||||++||+.+...+.+ .++.+. ++.|+|++||+.+.+..||++++|++|.
T Consensus 159 p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 159 TNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999887776 444433 3689999999999998899999999873
No 236
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-39 Score=364.91 Aligned_cols=229 Identities=25% Similarity=0.345 Sum_probs=183.1
Q ss_pred cEEEEeEEEECCCCCC-CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC----CCCcEEECCeecCCCCHHH
Q 001041 383 DIELRDVYFSYPARPN-EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP----QAGEVLIDGINLKEFQLQW 457 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~-~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~----~~G~i~i~g~~~~~~~~~~ 457 (1178)
.++++|++++|+.+.. ..+|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.+++.+.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 3789999999975322 3599999999999999999999999999999999999974 8999999999999888766
Q ss_pred Hh----cceEEEcCCCC--CC-cccHHHHHhcC---CCCCCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCC
Q 001041 458 IR----KKIGLVSQEPV--LF-TGSIKDNIAYG---KDDATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQL 523 (1178)
Q Consensus 458 ~r----~~i~~v~Q~~~--l~-~~ti~~ni~~~---~~~~~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~l 523 (1178)
++ +.|+||+|+|. +. .-|+.+++... ...... +++.+.++..++.+ ..........+|
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~--------~~~~l~~~p~~L 154 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPD--------PASRLDVYPHQL 154 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCC--------hHHHHhCCchhC
Confidence 54 36999999995 33 24565554321 111121 22223333322211 013456778899
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEE
Q 001041 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVE 600 (1178)
Q Consensus 524 SgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~ 600 (1178)
|||||||++|||||+.+|++||+||||++||+.+...+.+.++++.+ +.|+|+|||+++.+. .||+|++|++|+|+|
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive 234 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE 234 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999988753 789999999999985 599999999999999
Q ss_pred ecChhHHhcCCCchHHHHH
Q 001041 601 KGTHSKLVEDPEGAYSQLI 619 (1178)
Q Consensus 601 ~g~~~~l~~~~~~~~~~~~ 619 (1178)
.|+++++.+++...|.+.+
T Consensus 235 ~g~~~~~~~~p~hpyt~~l 253 (326)
T PRK11022 235 TGKAHDIFRAPRHPYTQAL 253 (326)
T ss_pred ECCHHHHhhCCCChHHHHH
Confidence 9999999987777776543
No 237
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=4.9e-39 Score=365.13 Aligned_cols=232 Identities=22% Similarity=0.391 Sum_probs=187.8
Q ss_pred cEEEEeEEEECCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC---CCcEEECCeecCCCCHHHH
Q 001041 383 DIELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ---AGEVLIDGINLKEFQLQWI 458 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~---~G~i~i~g~~~~~~~~~~~ 458 (1178)
.++++|++++|+.+. ...+++|+||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++|.++..++..++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 589999999996432 246999999999999999999999999999999999999996 9999999999998887665
Q ss_pred h----cceEEEcCCCC--CC-cccHHHHHhcCC---CCCCHHHH-HHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH
Q 001041 459 R----KKIGLVSQEPV--LF-TGSIKDNIAYGK---DDATTEEI-RVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1178)
Q Consensus 459 r----~~i~~v~Q~~~--l~-~~ti~~ni~~~~---~~~~~~~~-~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGq 527 (1178)
+ ++|+||+|+|. ++ ..|+.+|+.... ...+.++. ..+.+. .+.+ .+|++. ..++....+|||||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~---L~~v-gL~~~~-~~~~~~p~~LSgG~ 166 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRM---LDAV-KMPEAR-KRMKMYPHEFSGGM 166 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHH---HHHc-CCCChH-HHhcCCcccCCHHH
Confidence 3 47999999993 44 357777765321 11222222 222211 1221 344332 33677889999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecCh
Q 001041 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTH 604 (1178)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~ 604 (1178)
|||++||||++.+|++||+||||++||+.+...+.+.++++.+ +.|+|+|||+++.+. .||+|+||++|+|+|.|++
T Consensus 167 ~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~ 246 (330)
T PRK09473 167 RQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNA 246 (330)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999988754 789999999999986 4999999999999999999
Q ss_pred hHHhcCCCchHHHHH
Q 001041 605 SKLVEDPEGAYSQLI 619 (1178)
Q Consensus 605 ~~l~~~~~~~~~~~~ 619 (1178)
+++.+++...|.+.+
T Consensus 247 ~~i~~~p~~pyt~~l 261 (330)
T PRK09473 247 RDVFYQPSHPYSIGL 261 (330)
T ss_pred HHHHhCCCCHHHHHH
Confidence 999988777777643
No 238
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.7e-39 Score=351.78 Aligned_cols=217 Identities=23% Similarity=0.455 Sum_probs=184.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHH-Hhcc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW-IRKK 461 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~-~r~~ 461 (1178)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+... .|++
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 3789999999963 46999999999999999999999999999999999999999999999999998777644 5678
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHh
Q 001041 462 IGLVSQEPVLFT-GSIKDNIAYGKDD---ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1178)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal 537 (1178)
++|++|++.++. .|++||+.++... .+.++.+ ..+.+.++.+ |++.........||||||||++||||+
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 152 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQRE-----DRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARAL 152 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHHH-----HHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHH
Confidence 999999998886 5999999875321 1122111 1223445554 566666777789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhc
Q 001041 538 LKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVE 609 (1178)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1178)
+++|++|||||||++||+.+.+.+.+.++++. +++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 153 AANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 99999999999999999999999998888765 4789999999998775 599999999999999999998865
No 239
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-39 Score=340.23 Aligned_cols=224 Identities=34% Similarity=0.566 Sum_probs=189.5
Q ss_pred cEEEEeEEEECCCCCC---------------------CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCC
Q 001041 383 DIELRDVYFSYPARPN---------------------EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~---------------------~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G 441 (1178)
.|+++||+.-++.++. .--++|+||+|+.||+..|.|-||||||||++++.|+++|+.|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 4788888887764321 1236899999999999999999999999999999999999999
Q ss_pred cEEECCeecCCCCHHHHh----cceEEEcCCCCCC-cccHHHHHhcCCCCC------CHHHHHHHHHHhcHHHHHHhCCC
Q 001041 442 EVLIDGINLKEFQLQWIR----KKIGLVSQEPVLF-TGSIKDNIAYGKDDA------TTEEIRVATELANAAKFIDKLPQ 510 (1178)
Q Consensus 442 ~i~i~g~~~~~~~~~~~r----~~i~~v~Q~~~l~-~~ti~~ni~~~~~~~------~~~~~~~~~~~~~~~~~i~~~~~ 510 (1178)
+|.++|.|+..++.++|| +++++|+|+--|+ .-||.||..||.+-. ..++..++++.++|+++-.
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~---- 159 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYAD---- 159 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhh----
Confidence 999999999999987764 6899999999887 589999999996521 1233445556666555544
Q ss_pred CccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchh-hcc
Q 001041 511 GIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTV-RNA 587 (1178)
Q Consensus 511 g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~-~~~ 587 (1178)
.....||||+|||+.|||||..+|+|||+|||+|||||--...+|+.+.++.+ +||+++|||+++.. +-.
T Consensus 160 -------~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 160 -------KYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred -------cCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 34468999999999999999999999999999999999999999988866543 69999999999985 559
Q ss_pred CEEEEEeCCEEEEecChhHHhcCCCchHHH
Q 001041 588 DMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617 (1178)
Q Consensus 588 d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 617 (1178)
|||..|++|+|++.|+|+|++.++...|-.
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~ 262 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNPANDYVR 262 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCccHHHHH
Confidence 999999999999999999999987766644
No 240
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.1e-39 Score=352.53 Aligned_cols=218 Identities=30% Similarity=0.489 Sum_probs=183.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCcEEECCeecC-CCCHH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLK-EFQLQ 456 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~-~~~~~ 456 (1178)
.++++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|.|+++| .+|+|.++|.++. ..+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 4789999999963 4699999999999999999999999999999999999986 5899999999885 34566
Q ss_pred HHhcceEEEcCCCCCCcccHHHHHhcCCCC--C-CHH----HHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHH
Q 001041 457 WIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--A-TTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1178)
Q Consensus 457 ~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~-~~~----~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkq 529 (1178)
.+|+.++|++|+|.+|..|++||+.++... . ..+ ++.++++..++. +++.........+|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALW-------DEVKDRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCc-------hhhhHHhhcCcccCCHHHHH
Confidence 778899999999999999999999875321 1 111 122223322222 22234556677899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHh
Q 001041 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608 (1178)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 608 (1178)
|++||||++.+|+++||||||++||+.+.+.+.+.++++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988777899999999999876 9999999999999999998886
Q ss_pred cC
Q 001041 609 ED 610 (1178)
Q Consensus 609 ~~ 610 (1178)
.+
T Consensus 233 ~~ 234 (249)
T PRK14253 233 SN 234 (249)
T ss_pred cC
Confidence 54
No 241
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.9e-39 Score=356.01 Aligned_cols=221 Identities=27% Similarity=0.501 Sum_probs=185.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCcEEECCeecCCCC-HH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKEFQ-LQ 456 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~~~-~~ 456 (1178)
.++++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|.|+++| ++|+|.++|.++.+.+ ..
T Consensus 21 ~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 5899999999963 4699999999999999999999999999999999999986 6999999999987653 34
Q ss_pred HHhcceEEEcCCCCCCcccHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHHh--CCCCccchhcCCCCCCChHHHHHH
Q 001041 457 WIRKKIGLVSQEPVLFTGSIKDNIAYGKDD---ATTEEIRVATELANAAKFIDK--LPQGIDTLVGEHGTQLSGGQKQRI 531 (1178)
Q Consensus 457 ~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~--~~~g~~t~~~~~g~~lSgGqkqri 531 (1178)
.+|.+++|++|+|.+|..|+++|+.++... .++++..... .+.++. ++..+.+.+.....+||||||||+
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl 172 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVA-----QARLTEVGLWDAVKDRLSDSPFRLSGGQQQLL 172 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHH-----HHHHHHcCCCchhhhHhhCCcccCCHHHHHHH
Confidence 678899999999999999999999875321 2333332211 112222 222223456677889999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 532 ~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
+||||++.+|+++||||||++||+.+.+.+.+.++++.+++|+|+|||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 173 ~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 252 (276)
T PRK14271 173 CLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS 252 (276)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999999887667899999999998765 999999999999999999999765
Q ss_pred C
Q 001041 611 P 611 (1178)
Q Consensus 611 ~ 611 (1178)
+
T Consensus 253 ~ 253 (276)
T PRK14271 253 P 253 (276)
T ss_pred c
Confidence 3
No 242
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=8.6e-39 Score=351.23 Aligned_cols=204 Identities=32% Similarity=0.447 Sum_probs=174.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+++++
T Consensus 12 ~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 12 PLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred cEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 4999999999963 46999999999999999999999999999999999999999999999997653 457789
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCC
Q 001041 463 GLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1178)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~ 541 (1178)
+|++|++.+|. .|++||+.++.....++++.++++.. |++........+||||||||++||||++++|
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LSgGqkqrl~laraL~~~p 152 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAV-----------GLADRANEWPAALSGGQKQRVALARALIHRP 152 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHc-----------CChhHhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999998886 79999999764221123333333333 4444456667899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChh
Q 001041 542 RILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHS 605 (1178)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~ 605 (1178)
+++||||||++||+.+...+.+.|+++. .++|+|+|||+++.+. .||+|++|++|++++.|+.+
T Consensus 153 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 153 GLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999999999998864 3689999999999875 49999999999999988764
No 243
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=6e-39 Score=332.68 Aligned_cols=172 Identities=39% Similarity=0.705 Sum_probs=161.1
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
|+++|++++|++. ..++++++||++++||+++|+||+|||||||+++|+|+++|++|+|.++|.++.+.+...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 4689999999743 246999999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCE
Q 001041 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1178)
Q Consensus 464 ~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~i 543 (1178)
|++|+|++|..|++||+ ||||||||++||||++++|++
T Consensus 80 ~~~q~~~~~~~tv~~~l------------------------------------------LS~G~~qrv~la~al~~~p~~ 117 (173)
T cd03246 80 YLPQDDELFSGSIAENI------------------------------------------LSGGQRQRLGLARALYGNPRI 117 (173)
T ss_pred EECCCCccccCcHHHHC------------------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhccCEEEEEeCCEE
Q 001041 544 LLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVIHRGKI 598 (1178)
Q Consensus 544 lllDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~i 598 (1178)
+||||||++||+.+.+.+.+.++++. +++|+|++||+++.+..||+|++|++|++
T Consensus 118 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 118 LVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 99999999999999999999998875 47899999999999888999999999974
No 244
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=4.9e-39 Score=346.23 Aligned_cols=207 Identities=31% Similarity=0.545 Sum_probs=172.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. +.+++
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA 75 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence 468999999964 3699999999999999999999999999999999999999999999999998765543 46799
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccC
Q 001041 464 LVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1178)
Q Consensus 464 ~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~ 540 (1178)
|++|++.+|. .|++||+.++... ...++..+ .+.+.++.+ |++........+||||||||++||||++++
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qr~~laral~~~ 148 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDE-----RVREVAELL--QIEHLLDRKPKQLSGGQRQRVALGRAIVRE 148 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCHHHHhCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999999885 6999999875221 12222111 112223333 455556666788999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEec
Q 001041 541 PRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1178)
|+++||||||++||+++.+.+.+.++++.+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 149 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 149 PKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999988753 7899999999998865 9999999999999876
No 245
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.1e-39 Score=348.35 Aligned_cols=209 Identities=35% Similarity=0.518 Sum_probs=171.8
Q ss_pred EEEEeEEEECCCCCC-CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 384 IELRDVYFSYPARPN-EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~-~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
|+++|++++|+.... +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .++++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 468999999964211 469999999999999999999999999999999999999999999999998763 35689
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 463 GLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
+|++|+|.+|. .|++||+.++... ...++.. ..+.+.++.+ |++........+||||||||++||||+++
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~la~al~~ 148 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEAR-----ERAEELLELV--GLSGFENAYPHQLSGGMRQRVALARALAV 148 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CChhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 99999999886 7999999875321 1111111 1112233333 44444555667899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhh-ccCEEEEEe--CCEEEEecCh
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVR-NADMIAVIH--RGKIVEKGTH 604 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~-~~d~i~~l~--~G~i~~~g~~ 604 (1178)
+|+++||||||++||+.+...+.+.++++. .++|+|++||+++.+. .||++++|+ +|++++.++.
T Consensus 149 ~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 149 DPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999999999999999998874 3789999999999875 599999999 7999998765
No 246
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=5.6e-39 Score=362.98 Aligned_cols=217 Identities=25% Similarity=0.453 Sum_probs=180.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ....|+++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI 79 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence 4899999999963 4699999999999999999999999999999999999999999999999998654 35568899
Q ss_pred EEEcCCCCCC-cccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 463 GLVSQEPVLF-TGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 463 ~~v~Q~~~l~-~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
+|+||++.++ ..|++||+.+... ..+.++....+ .+.++.+ |+.........+||||||||++||||++.
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~ll~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~ 152 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVI-----PSLLEFA--RLESKADVRVALLSGGMKRRLTLARALIN 152 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHC--CChhHhcCchhhCCHHHHHHHHHHHHHhc
Confidence 9999999888 4799999975221 12222222211 1122222 34444455567899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
+|+++||||||++||+.+...+.+.++++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 153 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 153 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999998874 47899999999999865 999999999999999999998653
No 247
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-38 Score=351.67 Aligned_cols=222 Identities=30% Similarity=0.511 Sum_probs=186.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCCcEEECCeecCCC--CH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKEF--QL 455 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-----~~~G~i~i~g~~~~~~--~~ 455 (1178)
.++++|+++.|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.+||.++... +.
T Consensus 3 ~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 3789999999963 469999999999999999999999999999999999864 3899999999998653 45
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCC---CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 001041 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD---ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1178)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~---~~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqk 528 (1178)
..+|++++|+||+|++|..|++||+.++... .+. +++.++++.+++.+++. ...++.+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~ 152 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVK-------DKLDKSALGLSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHH-------HHHhCCcccCCHHHH
Confidence 6778899999999999999999999875321 112 22334455554443332 234566789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHH
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1178)
||++||||++++|+++||||||++||+.+.+.+.+.++++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778899999999998876 899999999999999999998
Q ss_pred hcCCCch
Q 001041 608 VEDPEGA 614 (1178)
Q Consensus 608 ~~~~~~~ 614 (1178)
...+...
T Consensus 233 ~~~~~~~ 239 (250)
T PRK14266 233 FINPKDK 239 (250)
T ss_pred HhCCCCh
Confidence 7654433
No 248
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.1e-39 Score=354.41 Aligned_cols=220 Identities=32% Similarity=0.496 Sum_probs=184.0
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCcEEECCeecCC--CC
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKE--FQ 454 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~--~~ 454 (1178)
+.++++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++.. .+
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (259)
T PRK14260 6 PAIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82 (259)
T ss_pred ceEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccc
Confidence 36899999999963 3599999999999999999999999999999999999985 48999999998854 34
Q ss_pred HHHHhcceEEEcCCCCCCcccHHHHHhcCCCC---CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH
Q 001041 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD---ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1178)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~---~~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGq 527 (1178)
...++.+++|++|+|.+|..|++||+.++... ..+ +.+.++++.+++.+.+ .......+..|||||
T Consensus 83 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~ 155 (259)
T PRK14260 83 INRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEV-------KDKLNKSALGLSGGQ 155 (259)
T ss_pred hHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchh-------hhHhcCCcccCCHHH
Confidence 56678899999999999999999999875311 111 2233444444433222 233456778999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEe-----CCEEEEe
Q 001041 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIH-----RGKIVEK 601 (1178)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~-----~G~i~~~ 601 (1178)
|||++||||++++|+++||||||++||+.+...+.+.++++.+++|+|++||+++.+.. ||++++|+ +|++++.
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 235 (259)
T PRK14260 156 QQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEF 235 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEe
Confidence 99999999999999999999999999999999999999988777899999999999865 99999997 5999999
Q ss_pred cChhHHhcCC
Q 001041 602 GTHSKLVEDP 611 (1178)
Q Consensus 602 g~~~~l~~~~ 611 (1178)
|+++++.+.+
T Consensus 236 ~~~~~~~~~~ 245 (259)
T PRK14260 236 GVTTQIFSNP 245 (259)
T ss_pred CCHHHHhcCC
Confidence 9999987653
No 249
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.5e-39 Score=353.63 Aligned_cols=212 Identities=26% Similarity=0.492 Sum_probs=182.1
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
++++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+..++++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 789999999963 46999999999999999999999999999999999999999999999999998888778888899
Q ss_pred EEcCCCCCCcc-cHHHHHhcCCCC-------CCH---HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHH
Q 001041 464 LVSQEPVLFTG-SIKDNIAYGKDD-------ATT---EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIA 532 (1178)
Q Consensus 464 ~v~Q~~~l~~~-ti~~ni~~~~~~-------~~~---~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~ 532 (1178)
|++|++.++.+ |+.||+.++... ... +++..+++.. |++.........||||||||++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~ 148 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQT-----------RINHLADRRLTDLSGGQRQRAF 148 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHc-----------CCHHHHcCCcccCCHHHHHHHH
Confidence 99999988865 999999976321 011 1222333332 3444455667889999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhc
Q 001041 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVE 609 (1178)
Q Consensus 533 lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1178)
||||++.+|++|||||||++||+++...+.+.++++. +++|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 9999999999999999999999999999999998865 4789999999999886 499999999999999999988754
No 250
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-38 Score=355.56 Aligned_cols=219 Identities=34% Similarity=0.521 Sum_probs=182.3
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCCcEEECCeecCC--CC
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--FQ 454 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-----~~~G~i~i~g~~~~~--~~ 454 (1178)
..|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 38 ~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 38 TVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred ceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 35899999999963 469999999999999999999999999999999999987 689999999999864 34
Q ss_pred HHHHhcceEEEcCCCCCCcccHHHHHhcCCCC--CC---HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHH
Q 001041 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--AT---TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1178)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~~---~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkq 529 (1178)
...+|++++|++|++.+|..|++||+.++... .. +++++.+++..++.+ .+.....+...+|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~i~~~~~~~~~~LSgGe~q 187 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWD-------EVKDQLDSSGLDLSGGQQQ 187 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCc-------hhHHHHhCCcccCCHHHHH
Confidence 55678899999999999988999999874211 11 222333333332211 1123456777899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEE-EEeCCEEEEecChhHH
Q 001041 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIA-VIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~-~l~~G~i~~~g~~~~l 607 (1178)
|++||||++++|+||||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+++ +|++|+|++.|+++++
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999988767899999999999875 99975 5799999999999988
Q ss_pred hcC
Q 001041 608 VED 610 (1178)
Q Consensus 608 ~~~ 610 (1178)
.++
T Consensus 268 ~~~ 270 (285)
T PRK14254 268 FEN 270 (285)
T ss_pred HhC
Confidence 654
No 251
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-38 Score=348.81 Aligned_cols=217 Identities=29% Similarity=0.502 Sum_probs=181.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecC------CCCHH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK------EFQLQ 456 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~------~~~~~ 456 (1178)
.++++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+..
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T PRK11124 2 SIQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred EEEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHH
Confidence 3789999999963 36999999999999999999999999999999999999999999999999873 12345
Q ss_pred HHhcceEEEcCCCCCCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHH
Q 001041 457 WIRKKIGLVSQEPVLFT-GSIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIA 532 (1178)
Q Consensus 457 ~~r~~i~~v~Q~~~l~~-~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~ 532 (1178)
..|++++|+||+|.+|. .|++||+.++.. ....++.. ..+.+.++.+ |++..+.....+||||||||++
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~ 151 (242)
T PRK11124 79 ELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQAL-----ARAEKLLERL--RLKPYADRFPLHLSGGQQQRVA 151 (242)
T ss_pred HHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHH
Confidence 67789999999999886 599999974211 11222211 1223444444 6666677777899999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhc
Q 001041 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1178)
Q Consensus 533 lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 609 (1178)
||||++++|+++||||||++||+++...+.+.++++. +++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 152 laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 230 (242)
T PRK11124 152 IARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQ 230 (242)
T ss_pred HHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhcC
Confidence 9999999999999999999999999999999998875 37899999999999865 99999999999999999988754
No 252
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-38 Score=353.97 Aligned_cols=221 Identities=31% Similarity=0.470 Sum_probs=185.9
Q ss_pred cccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCcEEECCeecC----
Q 001041 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLK---- 451 (1178)
Q Consensus 381 ~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~---- 451 (1178)
.+.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|.|+.+| ++|+|.++|.++.
T Consensus 14 ~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 14 QQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 456999999999963 3699999999999999999999999999999999999875 7999999998774
Q ss_pred CCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCC--CC-----HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCC
Q 001041 452 EFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--AT-----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLS 524 (1178)
Q Consensus 452 ~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~~-----~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lS 524 (1178)
..+...+++.++|++|++.+|.+|++||+.++... .. ++++..+++.+++.+ ++....+....+||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS 163 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWD-------EVKDRLGDLAFNLS 163 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCch-------hhhHHHhCCcccCC
Confidence 23455678899999999999999999999875311 11 123333443333222 33455677788999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecC
Q 001041 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGT 603 (1178)
Q Consensus 525 gGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~ 603 (1178)
||||||++||||++++|+++||||||++||+.+.+.+.+.++++.+++|+|+|||+++.+. .||++++|++|++++.|+
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~ 243 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGA 243 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999988776789999999999986 599999999999999999
Q ss_pred hhHHhcCC
Q 001041 604 HSKLVEDP 611 (1178)
Q Consensus 604 ~~~l~~~~ 611 (1178)
++++..++
T Consensus 244 ~~~~~~~~ 251 (265)
T PRK14252 244 TDTIFIKP 251 (265)
T ss_pred HHHHHhCC
Confidence 99987653
No 253
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=6.9e-39 Score=349.22 Aligned_cols=212 Identities=34% Similarity=0.527 Sum_probs=174.6
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCH---HHHh
Q 001041 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL---QWIR 459 (1178)
Q Consensus 384 i~~~~~~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~---~~~r 459 (1178)
|+++|++++|++.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 68999999996421 1269999999999999999999999999999999999999999999999999987763 5678
Q ss_pred cceEEEcCCCC--CC-cccHHHHHhcCCCC----CCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHHHHH
Q 001041 460 KKIGLVSQEPV--LF-TGSIKDNIAYGKDD----ATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRI 531 (1178)
Q Consensus 460 ~~i~~v~Q~~~--l~-~~ti~~ni~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~g~~-t~~~~~g~~lSgGqkqri 531 (1178)
++++|++|+|. ++ ..|++||+.++... ..++....+ ..+.++.+ |+. ........+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv 154 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEA-----VLLLLVGV--GLPEEVLNRYPHELSGGQRQRV 154 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHH-----HHHHHHHC--CCChhHhhCCchhcCHHHHHHH
Confidence 89999999993 44 57999999764211 111111111 01233333 443 456677789999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEec
Q 001041 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 532 ~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g 602 (1178)
+||||++.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 155 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999988764 789999999999987 59999999999998764
No 254
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-38 Score=355.71 Aligned_cols=217 Identities=28% Similarity=0.465 Sum_probs=178.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecC--CCCHHHHhcc
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK--EFQLQWIRKK 461 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~--~~~~~~~r~~ 461 (1178)
++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++. +.+...+|++
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 689999999963 46999999999999999999999999999999999999999999999999985 3344567789
Q ss_pred eEEEcCCCC--CCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHh
Q 001041 462 IGLVSQEPV--LFTGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1178)
Q Consensus 462 i~~v~Q~~~--l~~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal 537 (1178)
++|++|+|. ++..|+.+|+.++.. ..+.++.... +.+.++.+ |++........+||||||||++||||+
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~laraL 151 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRR-----VDEALTLV--DAQHFRHQPIQCLSHGQKKRVAIAGAL 151 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCHhHhcCCchhCCHHHHHHHHHHHHH
Confidence 999999985 567889999987421 1122222111 11222222 333334456678999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 538 LKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
+.+|++|||||||++||+.+...+.+.++++. +++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 152 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 152 VLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999998875 47899999999999854 999999999999999999888654
No 255
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=5e-39 Score=345.66 Aligned_cols=205 Identities=37% Similarity=0.654 Sum_probs=171.2
Q ss_pred EEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEE
Q 001041 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGL 464 (1178)
Q Consensus 385 ~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~ 464 (1178)
+++|++++|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++++++|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 368999999642 2469999999999999999999999999999999999999999999999999988777778889999
Q ss_pred EcCCCC--CCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccC
Q 001041 465 VSQEPV--LFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1178)
Q Consensus 465 v~Q~~~--l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~ 540 (1178)
++|+|. ++..|++||+.++... .+..+... .+.+.++.+ |++.........||||||||++||||++++
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~laral~~~ 152 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEE-----RVEEALELV--GLEGLRDRSPFTLSGGQKQRVAIAGVLAMD 152 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 999983 6788999999875321 12221111 112233333 455555666789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHhc-CCeEEEEecCcchhhc-cCEEEEEeCCE
Q 001041 541 PRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGK 597 (1178)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~ 597 (1178)
|+++||||||++||+.+...+.+.++++.+ ++|+|++||+++.+.. ||+|++|++|+
T Consensus 153 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 153 PDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999988754 7899999999999877 99999999985
No 256
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=9.6e-39 Score=346.05 Aligned_cols=213 Identities=25% Similarity=0.447 Sum_probs=179.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.|+++|+++.|++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++.++
T Consensus 7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 5899999999963 4699999999999999999999999999999999999999999999999999888887788899
Q ss_pred EEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHHHHHHHHHHhccCC
Q 001041 463 GLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1178)
Q Consensus 463 ~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~-t~~~~~g~~lSgGqkqri~lARal~~~~ 541 (1178)
+|++|++.+|..|++||+.++.......... ..+.+.++.+ |+. +.......+||||||||++||||++++|
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~laral~~~p 156 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDP-----AIFLDDLERF--ALPDTILTKNIAELSGGEKQRISLIRNLQFMP 156 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHH-----HHHHHHHHHc--CCChHHhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999998642100000000 1112334444 453 4567778899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhccCEEEEEe-CCEEEEecChh
Q 001041 542 RILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIH-RGKIVEKGTHS 605 (1178)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~-~G~i~~~g~~~ 605 (1178)
+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+..||++++|+ ++..+++|+|+
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 157 KVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 99999999999999999999999988753 789999999999998899999995 66677788875
No 257
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=7.7e-39 Score=364.06 Aligned_cols=217 Identities=27% Similarity=0.494 Sum_probs=180.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.. ...|++|
T Consensus 41 ~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 5999999999963 46999999999999999999999999999999999999999999999999987654 4678899
Q ss_pred EEEcCCCCCC-cccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 463 GLVSQEPVLF-TGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 463 ~~v~Q~~~l~-~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
+|+||++.++ ..|++||+.+.... .+.++..+.+ .+.++.+ |+.........+||||||||++|||||+.
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~ll~~~--~L~~~~~~~~~~LS~G~kqrv~lA~aL~~ 189 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVI-----PSLLEFA--RLESKADARVSDLSGGMKRRLTLARALIN 189 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CCchhhCCChhhCCHHHHHHHHHHHHHhc
Confidence 9999999886 67999999853211 1222222211 1122221 33333444556899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 190 ~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 190 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999998875 47899999999999865 999999999999999999998654
No 258
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-38 Score=352.55 Aligned_cols=223 Identities=22% Similarity=0.433 Sum_probs=185.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHH-hcc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI-RKK 461 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~-r~~ 461 (1178)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+.... +..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 4899999999963 469999999999999999999999999999999999999999999999999988776554 456
Q ss_pred eEEEcCCCCCCcc-cHHHHHhcCCCCCCH----------HHH--HHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 001041 462 IGLVSQEPVLFTG-SIKDNIAYGKDDATT----------EEI--RVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1178)
Q Consensus 462 i~~v~Q~~~l~~~-ti~~ni~~~~~~~~~----------~~~--~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqk 528 (1178)
++|++|+|.+|.. |++||+.++...... ... ..........+.++.+ |++........+||||||
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LS~G~~ 159 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERV--GLLEHANRQAGNLAYGQQ 159 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhC--ChhhhhhCChhhCCHHHH
Confidence 9999999999874 999999975311000 000 0000111223344444 666777888889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChh
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHS 605 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 605 (1178)
||++||||++.+|++|||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 160 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 239 (255)
T PRK11300 160 RRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPE 239 (255)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHH
Confidence 999999999999999999999999999999999999988753 6899999999999865 9999999999999999998
Q ss_pred HHhcC
Q 001041 606 KLVED 610 (1178)
Q Consensus 606 ~l~~~ 610 (1178)
++...
T Consensus 240 ~~~~~ 244 (255)
T PRK11300 240 EIRNN 244 (255)
T ss_pred HHhhC
Confidence 87643
No 259
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-38 Score=355.76 Aligned_cols=218 Identities=33% Similarity=0.558 Sum_probs=180.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCC--CCHHHHhcc
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE--FQLQWIRKK 461 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~--~~~~~~r~~ 461 (1178)
++++|++++|+. ..++++|+||+|++||+++|+||||||||||+++|+|+++|.+|+|.++|.++.. .+...++++
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 689999999963 2469999999999999999999999999999999999999999999999999852 234467889
Q ss_pred eEEEcCCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHh
Q 001041 462 IGLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1178)
Q Consensus 462 i~~v~Q~~--~l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal 537 (1178)
|+|++|+| .++..|++||+.++... .+.++.... +.+.++.+ |++........+||||||||++||||+
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--~L~~~~~~~~~~LS~Gq~qrv~laral 152 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKR-----VKEALKAV--GMEGFENKPPHHLSGGQKKRVAIAGIL 152 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHC--CCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 99999998 57888999999875321 122221111 11222222 343344455678999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc-CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcC
Q 001041 538 LKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
+.+|+++||||||++||+.+.+.+.+.+.++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 153 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 153 AMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999988753 789999999999987 5999999999999999999998754
No 260
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=5.9e-39 Score=345.87 Aligned_cols=201 Identities=30% Similarity=0.491 Sum_probs=168.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHH---HHhc
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ---WIRK 460 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~---~~r~ 460 (1178)
++++|++++|+. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++.. .+++
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 689999999952 24699999999999999999999999999999999999999999999999999877643 4677
Q ss_pred ceEEEcCCCCCCc-ccHHHHHhcCCCC--CC----HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHH
Q 001041 461 KIGLVSQEPVLFT-GSIKDNIAYGKDD--AT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1178)
Q Consensus 461 ~i~~v~Q~~~l~~-~ti~~ni~~~~~~--~~----~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~l 533 (1178)
.++|++|+|.+|. .|++||+.++... .. ++++++.++..++ .........+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGL-----------EHKADAFPEQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----------hhhhhCChhhCCHHHHHHHHH
Confidence 8999999999885 7999999875211 11 1233334443333 323344456899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCE
Q 001041 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGK 597 (1178)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~ 597 (1178)
|||++++|+++||||||++||+.+...+.+.++++. +++|+|++||+++.+.. ||+|++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999998865 47899999999999875 99999999985
No 261
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-38 Score=350.92 Aligned_cols=213 Identities=27% Similarity=0.481 Sum_probs=182.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.|+++|++++|++ +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++++
T Consensus 2 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i 78 (258)
T PRK13548 2 MLEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRR 78 (258)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhhe
Confidence 3789999999963 4699999999999999999999999999999999999999999999999999888777778899
Q ss_pred EEEcCCCCC-CcccHHHHHhcCCCCC--C----HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHH
Q 001041 463 GLVSQEPVL-FTGSIKDNIAYGKDDA--T----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1178)
Q Consensus 463 ~~v~Q~~~l-~~~ti~~ni~~~~~~~--~----~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lAR 535 (1178)
+|++|++.+ +..|++||+.++.... . ++++..+++.. |++.........||||||||++|||
T Consensus 79 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGe~qrv~la~ 147 (258)
T PRK13548 79 AVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQV-----------DLAHLAGRDYPQLSGGEQQRVQLAR 147 (258)
T ss_pred EEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHc-----------CCHhHhcCCcccCCHHHHHHHHHHH
Confidence 999999987 5789999998753211 1 11222233332 4444455667899999999999999
Q ss_pred Hhc------cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhH
Q 001041 536 AIL------KDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSK 606 (1178)
Q Consensus 536 al~------~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~ 606 (1178)
|++ .+|+++||||||++||+.+...+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 148 al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (258)
T PRK13548 148 VLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAE 227 (258)
T ss_pred HHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHH
Confidence 999 5999999999999999999999999998875 4789999999999886 599999999999999999988
Q ss_pred Hhc
Q 001041 607 LVE 609 (1178)
Q Consensus 607 l~~ 609 (1178)
+..
T Consensus 228 ~~~ 230 (258)
T PRK13548 228 VLT 230 (258)
T ss_pred HhC
Confidence 764
No 262
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-38 Score=351.61 Aligned_cols=225 Identities=30% Similarity=0.481 Sum_probs=182.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC-----CCcEEECCeecCC--CCH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ-----AGEVLIDGINLKE--FQL 455 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~-----~G~i~i~g~~~~~--~~~ 455 (1178)
.++++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|.|+++|. +|+|.++|.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 3789999999963 46999999999999999999999999999999999999874 8999999999865 344
Q ss_pred HHHhcceEEEcCCCCCCc-ccHHHHHhcCCCC--C-CHHHHHHHHHHhcHHHHHHhC--CCCccchhcCCCCCCChHHHH
Q 001041 456 QWIRKKIGLVSQEPVLFT-GSIKDNIAYGKDD--A-TTEEIRVATELANAAKFIDKL--PQGIDTLVGEHGTQLSGGQKQ 529 (1178)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~-~ti~~ni~~~~~~--~-~~~~~~~~~~~~~~~~~i~~~--~~g~~t~~~~~g~~lSgGqkq 529 (1178)
..+|+.++|++|+|.+|. .|++||+.++... . .+++..+.+. +.++.+ ..++.........+|||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~-----~~l~~~~l~~~l~~~~~~~~~~LS~G~~q 155 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAE-----RSLRGAALWDEVKDRLKTPATGLSGGQQQ 155 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHH-----HHHHHcCcchhhhhhhcCCcccCCHHHHH
Confidence 567889999999999887 5999999864321 1 2222222111 111111 111222334556789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHh
Q 001041 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608 (1178)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 608 (1178)
|++||||++++|++|||||||++||+.+.+.+.+.++++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 156 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 156 RLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999887777999999999999875 9999999999999999999987
Q ss_pred cCCCchH
Q 001041 609 EDPEGAY 615 (1178)
Q Consensus 609 ~~~~~~~ 615 (1178)
..+...+
T Consensus 236 ~~~~~~~ 242 (252)
T PRK14272 236 TNPRDER 242 (252)
T ss_pred hCcCcHH
Confidence 6544333
No 263
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=1.1e-38 Score=360.02 Aligned_cols=216 Identities=22% Similarity=0.440 Sum_probs=184.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
++++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +...+|++++
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig 78 (301)
T TIGR03522 3 IRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence 789999999963 469999999999999999999999999999999999999999999999999876 3456788999
Q ss_pred EEcCCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccC
Q 001041 464 LVSQEPVLFTG-SIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1178)
Q Consensus 464 ~v~Q~~~l~~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~ 540 (1178)
|+||+|.++.. |++||+.+.... ...++... ...+.++.+ |++........+||||||||++||||++++
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQ-----RVEEMIELV--GLRPEQHKKIGQLSKGYRQRVGLAQALIHD 151 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CCchHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 99999998865 999999763211 12221111 122334444 566666777789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 541 PRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
|++|||||||++||+.+.+.+.+.++++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 152 p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 152 PKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999988778999999999998875 999999999999999999998653
No 264
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-38 Score=350.91 Aligned_cols=220 Identities=31% Similarity=0.445 Sum_probs=184.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCcEEECCeecCC--CCH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKE--FQL 455 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~--~~~ 455 (1178)
.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|.|+++| .+|+|.++|.++.. .+.
T Consensus 20 ~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 20 VFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred eEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 6999999999963 3699999999999999999999999999999999999863 58999999999864 344
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCCC-----CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHH
Q 001041 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA-----TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1178)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~-----~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqr 530 (1178)
..+|++++|++|++.+|..|+.||+.++.... .++.+..+++.+++.+. +..........||||||||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LSgGq~qr 169 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEE-------VKDKLKEKGTALSGGQQQR 169 (274)
T ss_pred HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchh-------hHHHhcCCcccCCHHHHHH
Confidence 56788999999999999889999998753211 12223334444443222 2234556778899999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhh-ccCEEEEEe---------CCEEEE
Q 001041 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIH---------RGKIVE 600 (1178)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~---------~G~i~~ 600 (1178)
++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||++++|+ +|++++
T Consensus 170 v~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~ 249 (274)
T PRK14265 170 LCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVE 249 (274)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 9999999999999999999999999999999999998877789999999999886 499999997 899999
Q ss_pred ecChhHHhcCCC
Q 001041 601 KGTHSKLVEDPE 612 (1178)
Q Consensus 601 ~g~~~~l~~~~~ 612 (1178)
.|+++++..++.
T Consensus 250 ~g~~~~~~~~~~ 261 (274)
T PRK14265 250 FSPTEQMFGSPQ 261 (274)
T ss_pred eCCHHHHHhCCC
Confidence 999999876543
No 265
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-38 Score=351.81 Aligned_cols=214 Identities=27% Similarity=0.443 Sum_probs=183.5
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcc
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1178)
..|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++..
T Consensus 6 ~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (265)
T PRK10253 6 ARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR 82 (265)
T ss_pred cEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 46999999999973 469999999999999999999999999999999999999999999999999988888888889
Q ss_pred eEEEcCCCCCC-cccHHHHHhcCC-CC------CCH---HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHH
Q 001041 462 IGLVSQEPVLF-TGSIKDNIAYGK-DD------ATT---EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1178)
Q Consensus 462 i~~v~Q~~~l~-~~ti~~ni~~~~-~~------~~~---~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqr 530 (1178)
++|++|++.+| ..|++||+.++. +. ..+ +++..+++.. |++........+||||||||
T Consensus 83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~Gq~qr 151 (265)
T PRK10253 83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQAT-----------GITHLADQSVDTLSGGQRQR 151 (265)
T ss_pred eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHc-----------CCHHHhcCCcccCChHHHHH
Confidence 99999999877 579999998752 11 011 1223333333 44444556778999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHH
Q 001041 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1178)
++||||++++|+++||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 152 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (265)
T PRK10253 152 AWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI 231 (265)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999988753 6899999999998754 999999999999999999887
Q ss_pred hc
Q 001041 608 VE 609 (1178)
Q Consensus 608 ~~ 609 (1178)
..
T Consensus 232 ~~ 233 (265)
T PRK10253 232 VT 233 (265)
T ss_pred hh
Confidence 64
No 266
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-38 Score=354.61 Aligned_cols=221 Identities=30% Similarity=0.462 Sum_probs=182.4
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCCcEEECCeecCCC--C
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKEF--Q 454 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-----~~~G~i~i~g~~~~~~--~ 454 (1178)
..|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+.+ |++|+|.++|.++... +
T Consensus 38 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 38 PHVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred eEEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 35899999999963 359999999999999999999999999999999999864 4899999999988643 3
Q ss_pred HHHHhcceEEEcCCCCCCcccHHHHHhcCCCC--C-CH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH
Q 001041 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--A-TT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1178)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~-~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGq 527 (1178)
...+|++++|++|+|.+|..|++||+.++... . +. +++.++++..++.+ ++..........|||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LSgGq 187 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWD-------EVSDRLDKNALGLSGGQ 187 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCcc-------chhhHhhCChhhCCHHH
Confidence 34568899999999999988999999975321 1 11 12222333322211 12233456678899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhH
Q 001041 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606 (1178)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 606 (1178)
|||++||||++.+|++|||||||++||+++...+.+.++++.+++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~ 267 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQ 267 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999887767899999999999865 99999999999999999999
Q ss_pred HhcCCC
Q 001041 607 LVEDPE 612 (1178)
Q Consensus 607 l~~~~~ 612 (1178)
+.+++.
T Consensus 268 ~~~~~~ 273 (286)
T PRK14275 268 LFTNPK 273 (286)
T ss_pred HHhCCC
Confidence 876543
No 267
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=6.3e-39 Score=345.22 Aligned_cols=197 Identities=31% Similarity=0.516 Sum_probs=164.3
Q ss_pred EEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEE
Q 001041 386 LRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465 (1178)
Q Consensus 386 ~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v 465 (1178)
++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++++|+
T Consensus 2 ~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v 73 (213)
T cd03235 2 VEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYV 73 (213)
T ss_pred cccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEe
Confidence 6799999963 36999999999999999999999999999999999999999999999998764 457789999
Q ss_pred cCCCCC---CcccHHHHHhcCCCCC-------C---HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHH
Q 001041 466 SQEPVL---FTGSIKDNIAYGKDDA-------T---TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIA 532 (1178)
Q Consensus 466 ~Q~~~l---~~~ti~~ni~~~~~~~-------~---~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~ 532 (1178)
+|+|.+ ++.|++||+.++.... . .+++.++++.. |++........+||||||||++
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgG~~qrv~ 142 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERV-----------GLSELADRQIGELSGGQQQRVL 142 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHc-----------CCHHHHhCCcccCCHHHHHHHH
Confidence 999976 5689999998754311 1 12233333333 3333444566789999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEec
Q 001041 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 533 lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1178)
||||++.+|++|||||||++||+.+.+.+.+.++++. +++|+|++||+++.+.. ||+|++|++| +++.|
T Consensus 143 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 143 LARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999999998865 57899999999999865 8999999886 55544
No 268
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-38 Score=349.93 Aligned_cols=219 Identities=30% Similarity=0.417 Sum_probs=184.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCcEEECCeecCCC--CH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKEF--QL 455 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~~--~~ 455 (1178)
.+.+++.+++|+. .++|+|+||++++||+++|+|+||||||||+++|.|+++| .+|+|.++|.++... ..
T Consensus 8 ~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 8 VMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred eEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 4788999999953 4699999999999999999999999999999999999986 799999999998643 34
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCCC-----CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHH
Q 001041 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA-----TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1178)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~-----~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqr 530 (1178)
..+|+.++|++|+|++|..|++||+.++.... ..+++.++++..++.+.+ ....++...+||||||||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~G~~qr 157 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEV-------KDKLKVSGLSLSGGQQQR 157 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhh-------hhhhhCCcccCCHHHHHH
Confidence 46678899999999999999999998763211 123344455544443322 223456778999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEe--------CCEEEEe
Q 001041 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIH--------RGKIVEK 601 (1178)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~--------~G~i~~~ 601 (1178)
++||||++++|++|||||||++||+.+...+.+.++++.+++|+|++||+++.+.. ||+|++|+ +|++++.
T Consensus 158 v~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~ 237 (261)
T PRK14263 158 LCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEM 237 (261)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEe
Confidence 99999999999999999999999999999999999988777899999999998765 99999996 8999999
Q ss_pred cChhHHhcCC
Q 001041 602 GTHSKLVEDP 611 (1178)
Q Consensus 602 g~~~~l~~~~ 611 (1178)
|+++++.+++
T Consensus 238 g~~~~~~~~~ 247 (261)
T PRK14263 238 GPTAQIFQNP 247 (261)
T ss_pred CCHHHHHhCC
Confidence 9999987653
No 269
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=2.7e-38 Score=350.21 Aligned_cols=224 Identities=29% Similarity=0.471 Sum_probs=184.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCee-----cCCCCHHH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGIN-----LKEFQLQW 457 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~-----~~~~~~~~ 457 (1178)
.++++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 4899999999964 469999999999999999999999999999999999999999999999998 77666544
Q ss_pred ----HhcceEEEcCCCC--CC-cccHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChH
Q 001041 458 ----IRKKIGLVSQEPV--LF-TGSIKDNIAYGK---DDATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGG 526 (1178)
Q Consensus 458 ----~r~~i~~v~Q~~~--l~-~~ti~~ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~g~~-t~~~~~g~~lSgG 526 (1178)
.++.++|++|++. ++ ..|+.+|+.+.. ......+... ...+.++.+ |++ +..+..+.+||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LS~G 155 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERV--EIDAARIDDLPTTFSGG 155 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHc--CCChhHHhCCCccCCHH
Confidence 3567999999984 33 458888886421 1111122111 234555555 343 4667888999999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecC
Q 001041 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGT 603 (1178)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~ 603 (1178)
||||++||||++.+|++|||||||++||+.+.+.+.+.++++.+ +.|+|+|||+++.+. .||+|++|++|++++.|+
T Consensus 156 q~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~ 235 (258)
T PRK11701 156 MQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGL 235 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999987654 789999999999997 499999999999999999
Q ss_pred hhHHhcCCCchHH
Q 001041 604 HSKLVEDPEGAYS 616 (1178)
Q Consensus 604 ~~~l~~~~~~~~~ 616 (1178)
++++..++...|.
T Consensus 236 ~~~~~~~~~~~~~ 248 (258)
T PRK11701 236 TDQVLDDPQHPYT 248 (258)
T ss_pred HHHHhcCCCCHHH
Confidence 9998765444443
No 270
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-38 Score=356.81 Aligned_cols=219 Identities=30% Similarity=0.526 Sum_probs=184.5
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCCcEEECCeecCCC--C
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKEF--Q 454 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-----~~~G~i~i~g~~~~~~--~ 454 (1178)
..|+++|++++|++ .++|+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++... +
T Consensus 44 ~~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 44 AKLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred ceEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 35899999999964 469999999999999999999999999999999999986 6899999999998653 3
Q ss_pred HHHHhcceEEEcCCCCCCcccHHHHHhcCCCCC--------------C-----HHHHHHHHHHhcHHHHHHhCCCCccch
Q 001041 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA--------------T-----TEEIRVATELANAAKFIDKLPQGIDTL 515 (1178)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~--------------~-----~~~~~~~~~~~~~~~~i~~~~~g~~t~ 515 (1178)
...+|++++|++|++.+|+.|++||+.++.... . ++++..+++.++ ++.++++.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAA-------LWDEVNDR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcC-------CchhhhHH
Confidence 556788999999999999999999999753210 0 111222222222 23344566
Q ss_pred hcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEE-EEE
Q 001041 516 VGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMI-AVI 593 (1178)
Q Consensus 516 ~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i-~~l 593 (1178)
......+||||||||++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++ ++|
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l 273 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL 273 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe
Confidence 77888999999999999999999999999999999999999999999999988777899999999999865 9997 567
Q ss_pred eCCEEEEecChhHHhcC
Q 001041 594 HRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 594 ~~G~i~~~g~~~~l~~~ 610 (1178)
++|++++.|+++++.+.
T Consensus 274 ~~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 274 TGGELVEYDDTDKIFEN 290 (305)
T ss_pred cCCEEEEeCCHHHHHhC
Confidence 99999999999988754
No 271
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=1.8e-38 Score=351.19 Aligned_cols=221 Identities=25% Similarity=0.439 Sum_probs=182.1
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
++++|+++.|++ .++|+|+||++++||+++|+|+||||||||+++|.|+++|++|+|.++|.++...+...+++.++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 689999999963 46999999999999999999999999999999999999999999999999999888888888899
Q ss_pred EEcCCCC-CCcccHHHHHhcCCCCCCHH-HHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCC
Q 001041 464 LVSQEPV-LFTGSIKDNIAYGKDDATTE-EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1178)
Q Consensus 464 ~v~Q~~~-l~~~ti~~ni~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~ 541 (1178)
|++|++. .+..|++||+.++....... ..........+.+.++.+ |+..........||||||||++||||++.+|
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 156 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALART--ELSHLADRDMSTLSGGERQRVHVARALAQEP 156 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 9999985 45789999998753210000 000000011122333333 3444456667889999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHhc-CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhc
Q 001041 542 RILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVE 609 (1178)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1178)
+++||||||++||+.+...+.+.++++.+ +.|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 157 KLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 99999999999999999999999988753 689999999999995 599999999999999999988754
No 272
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=1.2e-38 Score=343.71 Aligned_cols=206 Identities=33% Similarity=0.536 Sum_probs=169.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCH---HHHhc
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL---QWIRK 460 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~---~~~r~ 460 (1178)
++++|++++|+.. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ...|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4689999999642 469999999999999999999999999999999999999999999999999887654 34677
Q ss_pred ceEEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHh
Q 001041 461 KIGLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1178)
Q Consensus 461 ~i~~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal 537 (1178)
.++|++|+|.+|. .|++||+.++... .+.++..+ .+.+.++.+ |++........+||||||||++||||+
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 151 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRK-----RVPAALELV--GLSHKHRALPAELSGGEQQRVAIARAI 151 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHhhCChhhcCHHHHHHHHHHHHH
Confidence 8999999998886 5999999875321 12221111 112223332 444444555678999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEE
Q 001041 538 LKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKI 598 (1178)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i 598 (1178)
+++|+++||||||++||+++.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++
T Consensus 152 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 152 VNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999998874 47899999999999875 899999999974
No 273
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-38 Score=350.40 Aligned_cols=218 Identities=32% Similarity=0.492 Sum_probs=180.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCcEEECCeecCC--CCH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKE--FQL 455 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~--~~~ 455 (1178)
.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++| ++|+|.++|.++.. .+.
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 4899999999963 3699999999999999999999999999999999999974 69999999998853 345
Q ss_pred HHHhcceEEEcCCCCCCc-ccHHHHHhcCCCC---CCHH----HHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH
Q 001041 456 QWIRKKIGLVSQEPVLFT-GSIKDNIAYGKDD---ATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1178)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~-~ti~~ni~~~~~~---~~~~----~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGq 527 (1178)
..+|+.++|++|++.+|. .|++||+.++... .+.+ ++.++++..++.+ +..........+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G~ 153 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWN-------EVKDRLDKPGGGLSGGQ 153 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCch-------hhhhHhhCCcccCCHHH
Confidence 567889999999998886 6999999865321 1111 2222233332211 12344566778999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhh-ccCEEEEEe------CCEEEE
Q 001041 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIH------RGKIVE 600 (1178)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~------~G~i~~ 600 (1178)
|||++||||++.+|+++||||||++||+.+...+.+.++++.+++|+|++||+++.+. .||+|++|+ +|+|++
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~ 233 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE 233 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe
Confidence 9999999999999999999999999999999999999988866789999999999885 599999997 899999
Q ss_pred ecChhHHhcC
Q 001041 601 KGTHSKLVED 610 (1178)
Q Consensus 601 ~g~~~~l~~~ 610 (1178)
.|+++++...
T Consensus 234 ~~~~~~~~~~ 243 (258)
T PRK14241 234 IDDTEKIFSN 243 (258)
T ss_pred cCCHHHHHhC
Confidence 9999998764
No 274
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-38 Score=340.05 Aligned_cols=201 Identities=31% Similarity=0.531 Sum_probs=168.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
|+++|++++|++. . .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .+++++
T Consensus 1 i~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGEQ---P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS 73 (211)
T ss_pred CEEEeEEEEeCCE---e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence 4689999999632 2 39999999999999999999999999999999999999999999999876654 356899
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCC-CC-----CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHH
Q 001041 464 LVSQEPVLFT-GSIKDNIAYGKD-DA-----TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1178)
Q Consensus 464 ~v~Q~~~l~~-~ti~~ni~~~~~-~~-----~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARa 536 (1178)
|++|+|.+|. .|++||+.++.. .. .++++.++++..++. ........+||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~ia~a 142 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLA-----------GLEKRLPGELSGGERQRVALARV 142 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCH-----------HHHhCCcccCCHHHHHHHHHHHH
Confidence 9999999986 499999987532 11 122344444444443 33344556899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEec
Q 001041 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1178)
++++|+++||||||++||+++...+.+.++++.+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 143 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 143 LVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999999999988753 7899999999999865 9999999999998754
No 275
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-38 Score=350.40 Aligned_cols=221 Identities=25% Similarity=0.380 Sum_probs=183.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC--------CCcEEECCeecCCCCH
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ--------AGEVLIDGINLKEFQL 455 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~--------~G~i~i~g~~~~~~~~ 455 (1178)
++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|.|+++|. +|+|.++|.++...+.
T Consensus 2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 689999999963 46999999999999999999999999999999999999998 9999999999988887
Q ss_pred HHHhcceEEEcCCCC-CCcccHHHHHhcCCCCC-CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHH
Q 001041 456 QWIRKKIGLVSQEPV-LFTGSIKDNIAYGKDDA-TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1178)
Q Consensus 456 ~~~r~~i~~v~Q~~~-l~~~ti~~ni~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~l 533 (1178)
..+++.++|+||++. +|..|++||+.++.... ...............+.++.+ |+++..+....+||||||||++|
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~l 156 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALA--GATALVGRDVTTLSGGELARVQF 156 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHH
Confidence 788888999999985 57889999998753111 000000000001122333333 66666777888999999999999
Q ss_pred HHHhc---------cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEe
Q 001041 534 ARAIL---------KDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEK 601 (1178)
Q Consensus 534 ARal~---------~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~ 601 (1178)
|||++ .+|++|||||||++||+.+.+.+.+.++++.+ ++|+|+|||+++.+. .||++++|++|++++.
T Consensus 157 aral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~ 236 (272)
T PRK13547 157 ARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAH 236 (272)
T ss_pred HHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEe
Confidence 99999 59999999999999999999999999988754 689999999999986 5999999999999999
Q ss_pred cChhHHhc
Q 001041 602 GTHSKLVE 609 (1178)
Q Consensus 602 g~~~~l~~ 609 (1178)
|+++++..
T Consensus 237 g~~~~~~~ 244 (272)
T PRK13547 237 GAPADVLT 244 (272)
T ss_pred cCHHHHcC
Confidence 99988754
No 276
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-38 Score=344.72 Aligned_cols=215 Identities=36% Similarity=0.552 Sum_probs=179.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
|+++|++++|+. +++++|+||++++||+++|+|+||||||||+++|+|+++|.+|+|.++|+++...+.. ++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~--~~~i~ 75 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPH--KRPVN 75 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChh--hcceE
Confidence 468999999963 3699999999999999999999999999999999999999999999999998876543 57899
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccC
Q 001041 464 LVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1178)
Q Consensus 464 ~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~ 540 (1178)
|++|++.+|. .|++||+.++... .+...... .+.+.++.+ |++........+||||||||++||||++++
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~lS~G~~qrl~laral~~~ 148 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKE-----RVAEALDLV--QLEGYANRKPSQLSGGQQQRVAIARALVNE 148 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999999986 4999999865321 11111111 111222222 445455566679999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 541 PRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 149 p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 149 PKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 999999999999999999999999988754 7899999999999865 999999999999999999888754
No 277
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-38 Score=350.33 Aligned_cols=221 Identities=31% Similarity=0.506 Sum_probs=183.7
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC-----CCcEEECCeecCC--CC
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ-----AGEVLIDGINLKE--FQ 454 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~-----~G~i~i~g~~~~~--~~ 454 (1178)
+.|+++|++++|++ ..+|+|+||++++||+++|+|+||||||||+++|.|+++|+ +|+|.++|.++.. .+
T Consensus 6 ~~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 6 PAIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred ceEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 36999999999963 35999999999999999999999999999999999999985 8999999998753 34
Q ss_pred HHHHhcceEEEcCCCCCCcccHHHHHhcCCCC---CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH
Q 001041 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD---ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1178)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~---~~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGq 527 (1178)
...+|+.++|++|++.+|..|++||+.++... .+. +++..+++..++.++ ++...++....|||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LSgGq 155 (261)
T PRK14258 83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDE-------IKHKIHKSALDLSGGQ 155 (261)
T ss_pred hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcch-------hhhHhcCCcccCCHHH
Confidence 45678899999999999999999999864211 111 223333333333222 2234566778999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhhc-cCEEEEEeC-----CEEE
Q 001041 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHR-----GKIV 599 (1178)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~-----G~i~ 599 (1178)
|||++||||++++|++|||||||++||+.+.+.+.+.++++. .++|+|+|||+++.+.. ||+|++|++ |+++
T Consensus 156 ~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~ 235 (261)
T PRK14258 156 QQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV 235 (261)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE
Confidence 999999999999999999999999999999999999998754 47899999999999865 999999999 9999
Q ss_pred EecChhHHhcCCC
Q 001041 600 EKGTHSKLVEDPE 612 (1178)
Q Consensus 600 ~~g~~~~l~~~~~ 612 (1178)
+.|+++++..++.
T Consensus 236 ~~~~~~~~~~~~~ 248 (261)
T PRK14258 236 EFGLTKKIFNSPH 248 (261)
T ss_pred EeCCHHHHHhCCC
Confidence 9999999976543
No 278
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-38 Score=360.52 Aligned_cols=229 Identities=24% Similarity=0.380 Sum_probs=184.3
Q ss_pred cEEEEeEEEECCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC----CCCCcEEECCeecCCCCHHH
Q 001041 383 DIELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD----PQAGEVLIDGINLKEFQLQW 457 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~----~~~G~i~i~g~~~~~~~~~~ 457 (1178)
.++++|++++|+.+. ...+|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|+++...+...
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 378999999996432 2469999999999999999999999999999999999986 58899999999998887665
Q ss_pred Hh----cceEEEcCCCCC--C-cccHHHHHhcCCC---CC-----CHHHHHHHHHHhcHHHHHHhCCCCcc---chhcCC
Q 001041 458 IR----KKIGLVSQEPVL--F-TGSIKDNIAYGKD---DA-----TTEEIRVATELANAAKFIDKLPQGID---TLVGEH 519 (1178)
Q Consensus 458 ~r----~~i~~v~Q~~~l--~-~~ti~~ni~~~~~---~~-----~~~~~~~~~~~~~~~~~i~~~~~g~~---t~~~~~ 519 (1178)
++ +.|+||+|+|.. . ..||.+|+..... .. ...+.. ..+.+.++.+ |++ ......
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~L~~~--gL~~~~~~~~~~ 155 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRK-----RRAIELLHRV--GIKDHKDAMRSF 155 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHH-----HHHHHHHHHC--CCCChHHHHhCC
Confidence 43 479999999963 2 4689999864211 00 101110 1112233333 332 234566
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCC
Q 001041 520 GTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRG 596 (1178)
Q Consensus 520 g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G 596 (1178)
..+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.++++.+ +.|+|+|||+++.+.. ||+|++|++|
T Consensus 156 p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G 235 (330)
T PRK15093 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCG 235 (330)
T ss_pred chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 789999999999999999999999999999999999999999999988754 7899999999999965 9999999999
Q ss_pred EEEEecChhHHhcCCCchHHHH
Q 001041 597 KIVEKGTHSKLVEDPEGAYSQL 618 (1178)
Q Consensus 597 ~i~~~g~~~~l~~~~~~~~~~~ 618 (1178)
+|+|.|+.+++..++...|.+.
T Consensus 236 ~ive~g~~~~i~~~p~~~y~~~ 257 (330)
T PRK15093 236 QTVETAPSKELVTTPHHPYTQA 257 (330)
T ss_pred EEEEECCHHHHHhCCCCHHHHH
Confidence 9999999999988766677653
No 279
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-38 Score=349.21 Aligned_cols=224 Identities=29% Similarity=0.481 Sum_probs=184.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECC------eecCCCCHH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG------INLKEFQLQ 456 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g------~~~~~~~~~ 456 (1178)
.+.++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|.|+++|++|+|.++| +++...+..
T Consensus 10 ~i~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 10 VFNISRLYLYIND---KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred heeeeeEEEecCC---ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 5899999999964 4699999999999999999999999999999999999999987766665 666666777
Q ss_pred HHhcceEEEcCCCCCCcc-cHHHHHhcCCCC--C-CHHHH----HHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 001041 457 WIRKKIGLVSQEPVLFTG-SIKDNIAYGKDD--A-TTEEI----RVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1178)
Q Consensus 457 ~~r~~i~~v~Q~~~l~~~-ti~~ni~~~~~~--~-~~~~~----~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqk 528 (1178)
.+|.+++|++|+|.+|.+ |++||+.++... . .+++. ..+++..++.+.+ ....++.+..||||||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~ 159 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEV-------YDRLNSPASQLSGGQQ 159 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccc-------hhhhcCCcccCCHHHH
Confidence 788999999999998865 999999975321 1 22222 2222222221111 1234567788999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHH
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 607 (1178)
||++||||++.+|+++||||||++||+.+.+.+.+.+.++.+++|+|++||+++.+. .||++++|++|++++.|+++++
T Consensus 160 qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~ 239 (257)
T PRK14246 160 QRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239 (257)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999988777799999999999985 5999999999999999999999
Q ss_pred hcCCCchHH
Q 001041 608 VEDPEGAYS 616 (1178)
Q Consensus 608 ~~~~~~~~~ 616 (1178)
.+++...+.
T Consensus 240 ~~~~~~~~~ 248 (257)
T PRK14246 240 FTSPKNELT 248 (257)
T ss_pred HhCCCcHHH
Confidence 876544443
No 280
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=3.3e-38 Score=344.68 Aligned_cols=215 Identities=33% Similarity=0.542 Sum_probs=180.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
|+++|++++|++ +++|+|+||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG 75 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence 468999999963 369999999999999999999999999999999999999999999999999876553 367899
Q ss_pred EEcCCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccC
Q 001041 464 LVSQEPVLFTG-SIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1178)
Q Consensus 464 ~v~Q~~~l~~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~ 540 (1178)
|+||+|.+|.+ |++||+.++... .+..... ..+.+.++.+ |+.........+|||||+||++||||++++
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~lS~G~~qrl~laral~~~ 148 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIK-----ARVEELLELV--QLEGLGDRYPNQLSGGQRQRVALARALAVE 148 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHHH-----HHHHHHHHHc--CCHhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999964 999999875421 1111111 1223444444 333344556678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 541 PRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
|+++||||||++||+++.+.+.+.+++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 149 p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 149 PQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 999999999999999999999999988654 6899999999998765 999999999999999999998764
No 281
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-38 Score=349.28 Aligned_cols=220 Identities=30% Similarity=0.464 Sum_probs=181.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC--C---CCCcEEECCeecCC--CCH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD--P---QAGEVLIDGINLKE--FQL 455 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~--~---~~G~i~i~g~~~~~--~~~ 455 (1178)
.|+++|++++|+. +++|+|+||++++||+++|+|+||||||||+++|.|+++ | ++|+|.++|.++.. .+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 4899999999963 469999999999999999999999999999999999865 4 58999999998864 334
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCC--C-CCHH----HHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 001041 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKD--D-ATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1178)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~--~-~~~~----~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqk 528 (1178)
..+++.++|++|+|.+|..|+++|+.++.. . ...+ ++...++..++. .++.........+||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~i~~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIW-------DEVKDHLHESALSLSGGQQ 154 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCc-------cchhhHHhcCcccCCHHHH
Confidence 566789999999999999999999987521 1 1111 122222222221 1233445667789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHH
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1178)
||++||||++++|++|||||||++||+++.+.+.+.|+++.++.|+|+|||+++.+.. ||+|++|++|++++.|++.++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999888767899999999999865 999999999999999999988
Q ss_pred hcCCC
Q 001041 608 VEDPE 612 (1178)
Q Consensus 608 ~~~~~ 612 (1178)
..++.
T Consensus 235 ~~~~~ 239 (252)
T PRK14255 235 FLNPK 239 (252)
T ss_pred hcCCC
Confidence 76543
No 282
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.1e-39 Score=305.65 Aligned_cols=192 Identities=29% Similarity=0.535 Sum_probs=168.6
Q ss_pred CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHH
Q 001041 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIK 477 (1178)
Q Consensus 398 ~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~ 477 (1178)
+.++|+++||++.+||+++|+||||||||||++.++-+.+|++|.+++.|.+++.++++.+|.+|+||.|.|-||.+||.
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVe 94 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVE 94 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchh
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCC----CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCC
Q 001041 478 DNIAYGKD----DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 553 (1178)
Q Consensus 478 ~ni~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~l 553 (1178)
||+.|+.. ..+.... .+++.++. -.++.+..+..+||||+|||+||+|-|---|+|||||||||||
T Consensus 95 DNlifP~~~r~rr~dr~aa---------~~llar~~-l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsAL 164 (223)
T COG4619 95 DNLIFPWQIRNRRPDRAAA---------LDLLARFA-LPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSAL 164 (223)
T ss_pred hccccchHHhccCCChHHH---------HHHHHHcC-CchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhc
Confidence 99998631 1111211 23333332 2356677888899999999999999999999999999999999
Q ss_pred CHHhHHHHHHHHHHHh--cCCeEEEEecCcch-hhccCEEEEEeCCEEE
Q 001041 554 DAESEKVVQEALDRIM--VNRTTVIVAHRLST-VRNADMIAVIHRGKIV 599 (1178)
Q Consensus 554 D~~~~~~i~~~i~~~~--~~~t~i~itH~~~~-~~~~d~i~~l~~G~i~ 599 (1178)
|+.+.+.|.+.|..+. ++..++.|||+.+. ++++|+++-+..|++-
T Consensus 165 D~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~ 213 (223)
T COG4619 165 DESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAG 213 (223)
T ss_pred ChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCccc
Confidence 9999999999998876 46799999999988 7889999999998864
No 283
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-38 Score=342.69 Aligned_cols=209 Identities=29% Similarity=0.503 Sum_probs=176.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
++++|++++|+. .+ .|+||++++||+++|+||||||||||+++|+|+++|.+|+|.++|.++...+.. +.+++
T Consensus 2 l~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~--~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHH---LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVS 74 (232)
T ss_pred eEEEEEEEEECC---cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChh--hccEE
Confidence 689999999963 22 399999999999999999999999999999999999999999999998766543 56899
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCC-CC--C---HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHH
Q 001041 464 LVSQEPVLFT-GSIKDNIAYGKD-DA--T---TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1178)
Q Consensus 464 ~v~Q~~~l~~-~ti~~ni~~~~~-~~--~---~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARa 536 (1178)
|++|++.+|. .|++||+.++.. .. . ++++.++++..+ ++..+......||||||||++||||
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrv~lara 143 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMG-----------IEDLLARLPGQLSGGQRQRVALARC 143 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcC-----------cHHHHhCCcccCCHHHHHHHHHHHH
Confidence 9999999887 499999987531 11 1 223334444443 4444455556899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
++++|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 144 l~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 144 LVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999988753 7899999999999865 999999999999999999988754
No 284
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=3.4e-38 Score=343.27 Aligned_cols=208 Identities=27% Similarity=0.405 Sum_probs=173.0
Q ss_pred cEEEEeEEEECCCCCC-CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHH---H
Q 001041 383 DIELRDVYFSYPARPN-EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW---I 458 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~-~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~---~ 458 (1178)
.|+++|++++|++... .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 4899999999974321 35999999999999999999999999999999999999999999999999998876543 2
Q ss_pred -hcceEEEcCCCCCCc-ccHHHHHhcCCC--CCCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHH
Q 001041 459 -RKKIGLVSQEPVLFT-GSIKDNIAYGKD--DATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1178)
Q Consensus 459 -r~~i~~v~Q~~~l~~-~ti~~ni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqr 530 (1178)
+.+++|++|+|.++. .|++||+.++.. .... +++.+.++.. |++.........||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQL-----------GLGKRLDHLPAQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCHhHhhCChhhCCHHHHHH
Confidence 357999999998886 599999986421 1111 2233333333 33333445567899999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhccCEEEEEeCCEEEEe
Q 001041 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEK 601 (1178)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~ 601 (1178)
++||||++.+|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+..||++++|++|++++.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999999999988743 6899999999999888999999999999763
No 285
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-38 Score=342.03 Aligned_cols=205 Identities=26% Similarity=0.492 Sum_probs=171.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
++++|+++.|++ +++++|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++.. ..+++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 468999999963 469999999999999999999999999999999999999999999999987753 4567899
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccC
Q 001041 464 LVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1178)
Q Consensus 464 ~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~ 540 (1178)
|++|++.++. .|++||+.++... ....+.. ..+.+.++.+ |++........+||||||||++||||++.+
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 146 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEAR-----RRIDEWLERL--ELSEYANKRVEELSKGNQQKVQFIAAVIHD 146 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHH-----HHHHHHHHHc--CChHHHhCcHhhCCHHHHHHHHHHHHHhcC
Confidence 9999998886 5999999864211 1111111 1223344444 555566677789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEec
Q 001041 541 PRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1178)
|+++||||||++||+.+.+.+.+.++++. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 147 p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 147 PELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999998764 46899999999998865 9999999999998754
No 286
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-38 Score=362.87 Aligned_cols=212 Identities=28% Similarity=0.481 Sum_probs=179.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCC----CHHHHh
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF----QLQWIR 459 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~----~~~~~r 459 (1178)
|++ |++++|++ . .+ |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+. .....+
T Consensus 2 l~~-~l~k~~~~---~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGD---L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCC---E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 566 89999963 2 23 99999999999999999999999999999999999999999999988653 233457
Q ss_pred cceEEEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhc
Q 001041 460 KKIGLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1178)
Q Consensus 460 ~~i~~v~Q~~~l~~-~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~ 538 (1178)
++++|++|++.+|. .|++||+.++......+++.+.++.. |++........+||||||||++|||||+
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LSgGq~qRvalaraL~ 144 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALL-----------GIEPLLDRYPGSLSGGEKQRVAIGRALL 144 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHc-----------CCchhhhCCcccCCHHHHHHHHHHHHHH
Confidence 78999999999985 69999999875433333444444433 4444455666899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcCCC
Q 001041 539 KDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612 (1178)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 612 (1178)
++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..++.
T Consensus 145 ~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~ 221 (352)
T PRK11144 145 TAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSA 221 (352)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcc
Confidence 99999999999999999999999999988754 6899999999998765 99999999999999999999987754
No 287
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=3.3e-38 Score=341.78 Aligned_cols=207 Identities=28% Similarity=0.477 Sum_probs=171.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHH---Hhc
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW---IRK 460 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~---~r~ 460 (1178)
|+++|++++|+. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +|+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 689999999942 246999999999999999999999999999999999999999999999999998776443 678
Q ss_pred ceEEEcCCCCC-CcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHh
Q 001041 461 KIGLVSQEPVL-FTGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1178)
Q Consensus 461 ~i~~v~Q~~~l-~~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal 537 (1178)
.++|++|+|.+ +..|++||+.++.. ..+.++....+ .+.++.+ |++........+||||||||++||||+
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 152 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRV-----SAALDKV--GLLDKAKNFPIQLSGGEQQRVGIARAV 152 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHH-----HHHHHHc--CChhhhhCCchhCCHHHHHHHHHHHHH
Confidence 99999999986 47899999987521 12222222111 1222222 344444556678999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEE
Q 001041 538 LKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIV 599 (1178)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~ 599 (1178)
+.+|++|||||||++||+.+.+.+.+.++++. +++|+|++||+++.+.. ||+|++|++|+++
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 153 VNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence 99999999999999999999999999998874 46899999999999876 8999999999986
No 288
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=2.3e-38 Score=341.21 Aligned_cols=205 Identities=32% Similarity=0.566 Sum_probs=171.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCC--CCHHHHhcc
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE--FQLQWIRKK 461 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~--~~~~~~r~~ 461 (1178)
++++|++++|++ .++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+....+++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 468999999964 469999999999999999999999999999999999999999999999998853 344567789
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHh
Q 001041 462 IGLVSQEPVLFT-GSIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1178)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal 537 (1178)
++|++|+|.+|. .|++||+.++.. ..+.++..+ .+.+.++.+ |++..+.....+||||||||++||||+
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al 150 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEE-----RALELLEKV--GLADKADAYPAQLSGGQQQRVAIARAL 150 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH-----HHHHHHHHc--CCHhHhhhCccccCHHHHHHHHHHHHH
Confidence 999999999885 799999987531 122222111 122334443 555566677789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc-CCeEEEEecCcchhhc-cCEEEEEeCCEE
Q 001041 538 LKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKI 598 (1178)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i 598 (1178)
+++|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. ||+|++|++|++
T Consensus 151 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 151 AMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999988754 6899999999999865 999999999974
No 289
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=3.1e-38 Score=342.74 Aligned_cols=214 Identities=27% Similarity=0.443 Sum_probs=170.7
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC---CCCCcEEECCeecCCCCHHHHh
Q 001041 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD---PQAGEVLIDGINLKEFQLQWIR 459 (1178)
Q Consensus 384 i~~~~~~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~---~~~G~i~i~g~~~~~~~~~~~r 459 (1178)
+.++||+++|++.+ .+++|+|+||++++||+++|+||||||||||+++|.|+++ |++|+|.++|.++. ....|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 56899999997542 3679999999999999999999999999999999999999 89999999999875 34567
Q ss_pred cceEEEcCCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHH-HHHhCCCCccchhcCCCCCCChHHHHHHHHHHHh
Q 001041 460 KKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAK-FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1178)
Q Consensus 460 ~~i~~v~Q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal 537 (1178)
++++|++|++.+|.+ |++||+.++...................+ .++.+ |+.....+...+||||||||++||||+
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral 158 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDL--ALTRIGGNLVKGISGGERRRVSIAVQL 158 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhh--cchhhhcccccCcCHHHHHHHHHHHHH
Confidence 889999999999876 99999987422110000000000001111 22222 444444556678999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCc-chh-hccCEEEEEeCCEEEEec
Q 001041 538 LKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRL-STV-RNADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~-~~~-~~~d~i~~l~~G~i~~~g 602 (1178)
+++|+++||||||++||+.+.+.+.+.+++.. +++|+|++||++ ..+ ..||+|++|++|++++.|
T Consensus 159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999998765 468999999998 354 569999999999999865
No 290
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=4.3e-38 Score=346.36 Aligned_cols=215 Identities=25% Similarity=0.391 Sum_probs=174.2
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC--CCCCCcEEECCeecCCCCHHHH-hc
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY--DPQAGEVLIDGINLKEFQLQWI-RK 460 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~--~~~~G~i~i~g~~~~~~~~~~~-r~ 460 (1178)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++...+.... +.
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 468999999963 46999999999999999999999999999999999994 7999999999999988776554 45
Q ss_pred ceEEEcCCCCCCc-ccHHHHHhcCCCCC---------CHHHHHHHHHHhcHHHHHHhCCCCccc-hhcCCCC-CCChHHH
Q 001041 461 KIGLVSQEPVLFT-GSIKDNIAYGKDDA---------TTEEIRVATELANAAKFIDKLPQGIDT-LVGEHGT-QLSGGQK 528 (1178)
Q Consensus 461 ~i~~v~Q~~~l~~-~ti~~ni~~~~~~~---------~~~~~~~~~~~~~~~~~i~~~~~g~~t-~~~~~g~-~lSgGqk 528 (1178)
.++|++|+|.+|. .|++||+.+..... +.++.. ..+.+.++.+ |++. ....... .||||||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~~LS~G~~ 150 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFL-----KLLKAKLALL--GMDEEFLNRSVNEGFSGGEK 150 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHH-----HHHHHHHHHc--CCchhhcccccccCcCHHHH
Confidence 6999999998886 48999997642110 111111 1122233332 3432 2233333 5999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc--cCEEEEEeCCEEEEecChh
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN--ADMIAVIHRGKIVEKGTHS 605 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~--~d~i~~l~~G~i~~~g~~~ 605 (1178)
||++||||++.+|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 151 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (243)
T TIGR01978 151 KRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVE 230 (243)
T ss_pred HHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHH
Confidence 99999999999999999999999999999999999998875 46899999999999875 7999999999999999987
Q ss_pred HHh
Q 001041 606 KLV 608 (1178)
Q Consensus 606 ~l~ 608 (1178)
++.
T Consensus 231 ~~~ 233 (243)
T TIGR01978 231 LAK 233 (243)
T ss_pred Hhc
Confidence 654
No 291
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=7.6e-38 Score=347.72 Aligned_cols=219 Identities=24% Similarity=0.432 Sum_probs=179.1
Q ss_pred cEEEEeEEEECCCC------CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHH
Q 001041 383 DIELRDVYFSYPAR------PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ 456 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~------~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~ 456 (1178)
.|+++|++++|+.+ .+.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999632 124699999999999999999999999999999999999999999999999998765555
Q ss_pred HHhcceEEEcCCCC--CC-cccHHHHHhcCCC---CCCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChH
Q 001041 457 WIRKKIGLVSQEPV--LF-TGSIKDNIAYGKD---DATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1178)
Q Consensus 457 ~~r~~i~~v~Q~~~--l~-~~ti~~ni~~~~~---~~~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgG 526 (1178)
..+++++|+||+|. ++ ..|+.+|+.++.. .... +++.++++.+++. .........+||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LS~G 153 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLL----------PDHASYYPHMLAPG 153 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCC----------hHHHhcCchhcCHH
Confidence 66678999999985 34 3489999875311 1111 2233333333331 11223345689999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecC
Q 001041 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603 (1178)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 603 (1178)
||||++||||++++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 154 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 233 (267)
T PRK15112 154 QKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCC
Confidence 99999999999999999999999999999999999999988753 7899999999999876 99999999999999999
Q ss_pred hhHHhcCC
Q 001041 604 HSKLVEDP 611 (1178)
Q Consensus 604 ~~~l~~~~ 611 (1178)
++++.+.+
T Consensus 234 ~~~~~~~~ 241 (267)
T PRK15112 234 TADVLASP 241 (267)
T ss_pred HHHHhcCC
Confidence 99987754
No 292
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=9e-38 Score=346.92 Aligned_cols=220 Identities=24% Similarity=0.395 Sum_probs=179.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC---CCcEEECCeecCCC-----C
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ---AGEVLIDGINLKEF-----Q 454 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~---~G~i~i~g~~~~~~-----~ 454 (1178)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... +
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 4899999999963 46999999999999999999999999999999999999886 49999999988653 2
Q ss_pred HHHHhcceEEEcCCCCCCc-ccHHHHHhcCCCCCCH--HH---HHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 001041 455 LQWIRKKIGLVSQEPVLFT-GSIKDNIAYGKDDATT--EE---IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1178)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~-~ti~~ni~~~~~~~~~--~~---~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqk 528 (1178)
...++.+++|+||++.+|. .|++||+.++...... .. .........+.+.++.+ |++........+||||||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~ 158 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRV--GMVHFAHQRVSTLSGGQQ 158 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHc--CCHHHHhCCccccCHHHH
Confidence 3456788999999998886 6999999875321100 00 00000011122334333 454455667788999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChh
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHS 605 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~ 605 (1178)
||++||||++.+|++|||||||++||+++.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 159 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~ 238 (262)
T PRK09984 159 QRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQ 238 (262)
T ss_pred HHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999988753 789999999999865 59999999999999999999
Q ss_pred HH
Q 001041 606 KL 607 (1178)
Q Consensus 606 ~l 607 (1178)
++
T Consensus 239 ~~ 240 (262)
T PRK09984 239 QF 240 (262)
T ss_pred Hh
Confidence 86
No 293
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.5e-38 Score=336.66 Aligned_cols=228 Identities=29% Similarity=0.502 Sum_probs=183.4
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-C----CCCcEEECCeecCCCCHHH
Q 001041 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-P----QAGEVLIDGINLKEFQLQW 457 (1178)
Q Consensus 384 i~~~~~~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-~----~~G~i~i~g~~~~~~~~~~ 457 (1178)
++++|++.+|.... ...+++|+||++++||++||||+|||||||+.++|+|+++ | .+|+|.++|.|+-.++.+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 57899999997542 2469999999999999999999999999999999999997 3 5799999999999999875
Q ss_pred ---Hh-cceEEEcCCCCC-Cc--cc----HHHHHhcCCCCCCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCC
Q 001041 458 ---IR-KKIGLVSQEPVL-FT--GS----IKDNIAYGKDDATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522 (1178)
Q Consensus 458 ---~r-~~i~~v~Q~~~l-~~--~t----i~~ni~~~~~~~~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~ 522 (1178)
+| +.|++|+|||.- +| -| +.|-+.......+. ++..+.++.+++ |+ -+..+....++
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi-------~~-~~~~~~~YPhe 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGI-------PD-PERRLKSYPHE 153 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCC-------CC-HHHHHhhCCcc
Confidence 44 579999999942 22 23 44444421111011 122233333322 21 12355677899
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEE
Q 001041 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIV 599 (1178)
Q Consensus 523 lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~ 599 (1178)
||||||||+.||-|+..+|++||-||||+|||..++++|.+.++++.+ +.|+|+|||++..+.. ||||+||..|+|+
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence 999999999999999999999999999999999999999999988764 7899999999998865 9999999999999
Q ss_pred EecChhHHhcCCCchHHHHH
Q 001041 600 EKGTHSKLVEDPEGAYSQLI 619 (1178)
Q Consensus 600 ~~g~~~~l~~~~~~~~~~~~ 619 (1178)
|.|+.+++..++...|.+..
T Consensus 234 E~g~~~~i~~~P~HPYT~~L 253 (316)
T COG0444 234 EEGPVEEIFKNPKHPYTRGL 253 (316)
T ss_pred EeCCHHHHhcCCCChHHHHH
Confidence 99999999999888888764
No 294
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=9.7e-38 Score=335.62 Aligned_cols=202 Identities=31% Similarity=0.500 Sum_probs=169.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
++++|++++|+. .++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+ ..++.++
T Consensus 1 ~~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~ 73 (213)
T TIGR01277 1 LALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVS 73 (213)
T ss_pred CeEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceE
Confidence 368999999952 468999999999999999999999999999999999999999999999987643 3567899
Q ss_pred EEcCCCCCCc-ccHHHHHhcCC-CCC-----CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHH
Q 001041 464 LVSQEPVLFT-GSIKDNIAYGK-DDA-----TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1178)
Q Consensus 464 ~v~Q~~~l~~-~ti~~ni~~~~-~~~-----~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARa 536 (1178)
|++|+|.+|. .|++||+.++. +.. .++++.++++..++ +........+||||||||++||||
T Consensus 74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrl~lara 142 (213)
T TIGR01277 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGI-----------ADYLDRLPEQLSGGQRQRVALARC 142 (213)
T ss_pred EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCc-----------HHHhhCCcccCCHHHHHHHHHHHH
Confidence 9999999886 59999998642 111 12233334444443 333445556899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecC
Q 001041 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603 (1178)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 603 (1178)
++++|+++||||||++||+++.+.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|.
T Consensus 143 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 143 LVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999999999988753 6899999999998864 99999999999998874
No 295
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-37 Score=340.18 Aligned_cols=214 Identities=30% Similarity=0.557 Sum_probs=178.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
|+++|++++|+. ++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|.++...+.. ++.++
T Consensus 1 l~~~~l~~~~~~----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~--~~~i~ 74 (235)
T cd03299 1 LKVENLSKDWKE----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPE--KRDIS 74 (235)
T ss_pred CeeEeEEEEeCC----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChh--HcCEE
Confidence 468999999962 279999999999999999999999999999999999999999999999998876543 67899
Q ss_pred EEcCCCCCC-cccHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccC
Q 001041 464 LVSQEPVLF-TGSIKDNIAYGKDDA--TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1178)
Q Consensus 464 ~v~Q~~~l~-~~ti~~ni~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~ 540 (1178)
|++|++.+| ..|++||+.++.... +..+... .+.+.++.+ |+...+.....+||||||||++||||++++
T Consensus 75 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral~~~ 147 (235)
T cd03299 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIER-----KVLEIAEML--GIDHLLNRKPETLSGGEQQRVAIARALVVN 147 (235)
T ss_pred EEeecCccCCCccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CChhHHhcCcccCCHHHHHHHHHHHHHHcC
Confidence 999999988 479999998753221 1111111 111222222 444445556678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 541 PRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
|++++|||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 148 p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 148 PKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 999999999999999999999999988653 7899999999999875 999999999999999999988765
No 296
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=4e-38 Score=355.91 Aligned_cols=204 Identities=22% Similarity=0.425 Sum_probs=170.6
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCc-ccHH
Q 001041 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT-GSIK 477 (1178)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-~ti~ 477 (1178)
.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ....+|++++|+||++.++. .|++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHH
Confidence 469999999999999999999999999999999999999999999999999876 34566889999999998886 5999
Q ss_pred HHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 001041 478 DNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555 (1178)
Q Consensus 478 ~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~ 555 (1178)
||+.+.... .+..+... ...+.++.+ |+.........+||||||||++||||++++|++|||||||++||+
T Consensus 85 e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~ 157 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEE-----RAEELLELF--ELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDP 157 (302)
T ss_pred HHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence 999874211 11111111 112233333 444445566678999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 556 ESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 556 ~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
.+.+.+.+.++++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 158 ~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 158 RTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 99999999998875 47899999999999865 999999999999999999998653
No 297
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-38 Score=311.09 Aligned_cols=219 Identities=27% Similarity=0.476 Sum_probs=182.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
+++.+++.+|++ ...+++|+||+++.||+++|.|+|||||||+|+.|..++.|++|.|++||.|+...+ ...|++||
T Consensus 2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p-~~vrr~IG 78 (245)
T COG4555 2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDP-SFVRRKIG 78 (245)
T ss_pred eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccCh-HHHhhhcc
Confidence 678899999975 234899999999999999999999999999999999999999999999999987654 45688999
Q ss_pred EEcCCCCCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCC
Q 001041 464 LVSQEPVLF-TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1178)
Q Consensus 464 ~v~Q~~~l~-~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~ 542 (1178)
+++-+.-++ ..|+||||.|...-+.-.+.+...+...+.+.+ +++..+..+..+||-|+|||++|||||.++|+
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l-----~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~ 153 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRL-----QLLEYLDRRVGEFSTGMKQKVAIARALVHDPS 153 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh-----ChHHHHHHHHhhhchhhHHHHHHHHHHhcCCC
Confidence 999766666 689999999853222222222222333333322 45555566667899999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHhc-CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcC
Q 001041 543 ILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
+++||||||+||..+.+.+++.+..+.. ++++|+.||.++.++ -||+|+++++|+++..|+++++.+.
T Consensus 154 i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 154 ILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred eEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 9999999999999999999999988765 899999999999998 5999999999999999999988654
No 298
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1.7e-37 Score=344.88 Aligned_cols=226 Identities=27% Similarity=0.432 Sum_probs=185.7
Q ss_pred cEEEEeEEEECCCC------CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHH
Q 001041 383 DIELRDVYFSYPAR------PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ 456 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~------~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~ 456 (1178)
.|+++|+++.|+.. .++++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+..
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 37899999999631 125799999999999999999999999999999999999999999999999998877653
Q ss_pred ---HHhcceEEEcCCCC--CC-cccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccc-hhcCCCCCCChH
Q 001041 457 ---WIRKKIGLVSQEPV--LF-TGSIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSGG 526 (1178)
Q Consensus 457 ---~~r~~i~~v~Q~~~--l~-~~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~g~~t-~~~~~g~~lSgG 526 (1178)
.+|+.++|++|++. ++ ..|+++|+.+... ..+.++ ....+.+.+..+ |+++ ........||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~-----~~~~~~~~l~~~--gl~~~~~~~~~~~LS~G 155 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAE-----RLARASEMLRAV--DLDDSVLDKRPPQLSGG 155 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHH-----HHHHHHHHHHHc--CCChhHhhCCCccCChH
Confidence 46788999999983 33 4799999865311 111111 111233445444 6653 557778899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecC
Q 001041 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603 (1178)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 603 (1178)
||||++||||++.+|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 156 e~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~ 235 (268)
T PRK10419 156 QLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQP 235 (268)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCC
Confidence 99999999999999999999999999999999999999988753 7899999999999975 99999999999999999
Q ss_pred hhHHhcCCCchHH
Q 001041 604 HSKLVEDPEGAYS 616 (1178)
Q Consensus 604 ~~~l~~~~~~~~~ 616 (1178)
++++... .+.|.
T Consensus 236 ~~~~~~~-~~~~~ 247 (268)
T PRK10419 236 VGDKLTF-SSPAG 247 (268)
T ss_pred hhhccCC-CCHHH
Confidence 9998754 44444
No 299
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.1e-37 Score=358.72 Aligned_cols=233 Identities=31% Similarity=0.505 Sum_probs=188.8
Q ss_pred ccEEEEeEEEECCCCC--------CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCee--cC
Q 001041 382 GDIELRDVYFSYPARP--------NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGIN--LK 451 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~--------~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~--~~ 451 (1178)
.-++++|++.+|..++ ...+++|+||++++||++||||+||||||||.++|+|+.+|++|+|.++|.| .+
T Consensus 279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~ 358 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLT 358 (539)
T ss_pred ceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccc
Confidence 3478999999997421 2468999999999999999999999999999999999999999999999977 33
Q ss_pred CCCHHHHhcceEEEcCCCCCC---cccHHHHHhcCCCCCCH--HHHHHHHHHhcHHHHHHhCCCCccc-hhcCCCCCCCh
Q 001041 452 EFQLQWIRKKIGLVSQEPVLF---TGSIKDNIAYGKDDATT--EEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSG 525 (1178)
Q Consensus 452 ~~~~~~~r~~i~~v~Q~~~l~---~~ti~~ni~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~g~~t-~~~~~g~~lSg 525 (1178)
.-+....|+++-+|+|||.-. ..||+++|.-....+.. ...++ .+...+.+.+ |+.. ........|||
T Consensus 359 ~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~-~rv~~ll~~V-----gL~~~~l~ryP~elSG 432 (539)
T COG1123 359 GGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERR-ARVAELLELV-----GLPPEFLDRYPHELSG 432 (539)
T ss_pred cchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHH-HHHHHHHHHc-----CCCHHHHhcCchhcCc
Confidence 333556788999999999642 57999998743211110 01111 1122222222 3333 46778899999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEec
Q 001041 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 526 Gqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1178)
|||||+||||||..+|+++++|||||+||+-+...+.+.++++.+ +.|.|+|||++..++. ||||+||++|+|+|.|
T Consensus 433 GQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G 512 (539)
T COG1123 433 GQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEG 512 (539)
T ss_pred chhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeC
Confidence 999999999999999999999999999999999999999988764 6899999999999987 9999999999999999
Q ss_pred ChhHHhcCCCchHHHHHH
Q 001041 603 THSKLVEDPEGAYSQLIR 620 (1178)
Q Consensus 603 ~~~~l~~~~~~~~~~~~~ 620 (1178)
+.+++.+.+...|.+..-
T Consensus 513 ~~~~v~~~p~h~Ytr~L~ 530 (539)
T COG1123 513 PTEKVFENPQHPYTRKLL 530 (539)
T ss_pred CHHHHhcCCCChHHHHHH
Confidence 999999988888887653
No 300
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=7.8e-38 Score=348.85 Aligned_cols=214 Identities=31% Similarity=0.537 Sum_probs=183.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++.+|+. +..+|+|+||+|++||++|++||||||||||+++|+|++.|++|+|.++|.+...- ....|++|
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence 4788999999963 24699999999999999999999999999999999999999999999999988765 66788899
Q ss_pred EEEcCCCCCC-cccHHHHHhcCCCC------CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHH
Q 001041 463 GLVSQEPVLF-TGSIKDNIAYGKDD------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1178)
Q Consensus 463 ~~v~Q~~~l~-~~ti~~ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lAR 535 (1178)
||+||+|.++ .-|++||+.|...- ..++++.+.++..++.+ ........||+|||||++||+
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~-----------~~~~~~~~lS~G~kqrl~ia~ 149 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLED-----------KANKKVRTLSGGMKQRLSIAL 149 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCch-----------hhCcchhhcCHHHHHHHHHHH
Confidence 9999999877 57999999984321 12344555555544332 124456789999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc-C-CeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV-N-RTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~-~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
||+.+|++|||||||++|||.+.+.+.+.|+++.+ + +|+++.||.++.+.. ||+|++|++|+++..|+++++...
T Consensus 150 aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 99999999999999999999999999999998875 4 699999999999977 999999999999999999987653
No 301
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=1.4e-37 Score=358.04 Aligned_cols=215 Identities=33% Similarity=0.517 Sum_probs=179.4
Q ss_pred eEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCC----HHHHhcceE
Q 001041 388 DVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ----LQWIRKKIG 463 (1178)
Q Consensus 388 ~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~----~~~~r~~i~ 463 (1178)
|++++|++ . .+ |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ....|++++
T Consensus 4 ~l~~~~~~---~-~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGD---F-SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECC---E-EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 78999963 2 34 999999999999999999999999999999999999999999999986532 234577899
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCC
Q 001041 464 LVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1178)
Q Consensus 464 ~v~Q~~~l~~-~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~ 542 (1178)
|++|++.+|. .|++||+.|+.......+.. ..+.+.++.+ |++........+||||||||++||||++.+|+
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~-----~~~~~~l~~~--gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~ 151 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMKRARPSERR-----ISFERVIELL--GIGHLLGRLPGRLSGGEKQRVAIGRALLSSPR 151 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhhccChhHHH-----HHHHHHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 9999999986 59999999865432221111 1122334443 66666777788999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcCCCch
Q 001041 543 ILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGA 614 (1178)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 614 (1178)
+|||||||++||+.+.+.+.+.++++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..++...
T Consensus 152 lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~ 226 (354)
T TIGR02142 152 LLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLP 226 (354)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcCcc
Confidence 9999999999999999999999988754 6899999999998865 9999999999999999999998765433
No 302
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-37 Score=342.71 Aligned_cols=207 Identities=28% Similarity=0.469 Sum_probs=171.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +..++
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERG 73 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEE
Confidence 689999999963 4699999999999999999999999999999999999999999999999987642 24699
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccC
Q 001041 464 LVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1178)
Q Consensus 464 ~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~ 540 (1178)
|++|++.++. .|++||+.++... ....+.. ..+.+.++.+ |++........+||||||||++||||++.+
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LSgGq~qrl~laral~~~ 146 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRL-----EIAHQMLKKV--GLEGAEKRYIWQLSGGQRQRVGIARALAAN 146 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHH-----HHHHHHHHHc--CChhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999998886 6999999875321 1221111 1122334443 455455566789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhhc-cCEEEEEe--CCEEEEecChh
Q 001041 541 PRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIH--RGKIVEKGTHS 605 (1178)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~--~G~i~~~g~~~ 605 (1178)
|++|||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|+ +|++++.++.+
T Consensus 147 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 147 PQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 99999999999999999999999998864 37899999999998865 99999998 59999987653
No 303
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-37 Score=321.63 Aligned_cols=171 Identities=53% Similarity=0.927 Sum_probs=160.2
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
++++|++++|++. ..++++|+||++++||+++|+||||||||||+++|.|+++|.+|+|.++|.++...+...+|++++
T Consensus 1 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred CEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence 4689999999743 236999999999999999999999999999999999999999999999999998888778888999
Q ss_pred EEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCE
Q 001041 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1178)
Q Consensus 464 ~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~i 543 (1178)
|++|+|.+|+.|+.||+ ||||||||++||||++.+|++
T Consensus 80 ~~~~~~~~~~~t~~e~l------------------------------------------LS~G~~~rl~la~al~~~p~l 117 (171)
T cd03228 80 YVPQDPFLFSGTIRENI------------------------------------------LSGGQRQRIAIARALLRDPPI 117 (171)
T ss_pred EEcCCchhccchHHHHh------------------------------------------hCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCE
Q 001041 544 LLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGK 597 (1178)
Q Consensus 544 lllDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~ 597 (1178)
+||||||++||+.+...+.+.++++.+++|+|++||+++.+..||++++|++|+
T Consensus 118 lllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 118 LILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 999999999999999999999988877789999999999998899999999984
No 304
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.4e-38 Score=312.36 Aligned_cols=224 Identities=24% Similarity=0.449 Sum_probs=186.9
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHH-Hhc
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW-IRK 460 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~-~r~ 460 (1178)
+.+..+|+..+|.. +++++++||++++||+|++.||+|+||||...++.|+.+|++|+|.+||.|++.++.+. -|-
T Consensus 3 ~~L~a~~l~K~y~k---r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArl 79 (243)
T COG1137 3 STLVAENLAKSYKK---RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARL 79 (243)
T ss_pred cEEEehhhhHhhCC---eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhc
Confidence 35788999999964 46999999999999999999999999999999999999999999999999999999875 356
Q ss_pred ceEEEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 461 KIGLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 461 ~i~~v~Q~~~l~~-~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
.|+|+||+|-+|. -||+|||..-.+. .+...+...+...+++.++.+ ++.......+..||||||.|+-|||||..
T Consensus 80 GigYLpQE~SIFr~LtV~dNi~~vlE~-~~~d~~~~~~~~~l~~LL~ef--~i~hlr~~~a~sLSGGERRR~EIARaLa~ 156 (243)
T COG1137 80 GIGYLPQEASIFRKLTVEDNIMAVLEI-REKDLKKAERKEELDALLEEF--HITHLRDSKAYSLSGGERRRVEIARALAA 156 (243)
T ss_pred CcccccccchHhhcCcHHHHHHHHHhh-hhcchhHHHHHHHHHHHHHHh--chHHHhcCcccccccchHHHHHHHHHHhc
Confidence 7999999999995 6999999864332 111111122222333344444 56777788899999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc-CCeEEEEecCcc-hhhccCEEEEEeCCEEEEecChhHHhcCC
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLS-TVRNADMIAVIHRGKIVEKGTHSKLVEDP 611 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~-~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 611 (1178)
+|+.+|||||+|++||.+...|++.|+.+.. +--+++.-|+.. ++.-|||.+++.+|+|...|+|+|+.+++
T Consensus 157 ~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~ 230 (243)
T COG1137 157 NPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230 (243)
T ss_pred CCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcCh
Confidence 9999999999999999999999999988754 445555558865 67889999999999999999999998863
No 305
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-37 Score=330.37 Aligned_cols=191 Identities=23% Similarity=0.381 Sum_probs=163.0
Q ss_pred cEEEEeEEEECCCC-CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC---CCCCcEEECCeecCCCCHHHH
Q 001041 383 DIELRDVYFSYPAR-PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD---PQAGEVLIDGINLKEFQLQWI 458 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~-~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~---~~~G~i~i~g~~~~~~~~~~~ 458 (1178)
.+.++|++|.|+.. .++++|+|+||++++||+++|+||||||||||+++|.|+++ |++|+|.++|.++...+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 37899999999854 35679999999999999999999999999999999999999 89999999999987764 356
Q ss_pred hcceEEEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHh
Q 001041 459 RKKIGLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1178)
Q Consensus 459 r~~i~~v~Q~~~l~~-~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal 537 (1178)
+++++|++|++.+|. .|++||+.++... . ..+....||||||||++||||+
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~------~----------------------~~~~~~~LS~Ge~qrl~laral 133 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRC------K----------------------GNEFVRGISGGERKRVSIAEAL 133 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhh------c----------------------cccchhhCCHHHHHHHHHHHHH
Confidence 778999999998886 5999999864210 0 2234467999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecC-cchh-hccCEEEEEeCCEEEEec
Q 001041 538 LKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHR-LSTV-RNADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~-~~~~-~~~d~i~~l~~G~i~~~g 602 (1178)
+++|+++||||||++||+++.+.+.+.++++.+ +.|+|+++|+ .+.+ ..||++++|++|++++.|
T Consensus 134 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 134 VSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred hhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 999999999999999999999999999998754 4576776654 5665 469999999999998764
No 306
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=2.5e-37 Score=341.99 Aligned_cols=224 Identities=27% Similarity=0.440 Sum_probs=182.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCee-----cCCCCHHH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGIN-----LKEFQLQW 457 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~-----~~~~~~~~ 457 (1178)
.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ +...+...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 3 LLQVSGLSKSYGG---GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred eEEEeeeEEEeCC---ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 4899999999963 358999999999999999999999999999999999999999999999987 66666543
Q ss_pred ----HhcceEEEcCCCC--C-CcccHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChH
Q 001041 458 ----IRKKIGLVSQEPV--L-FTGSIKDNIAYGK---DDATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGG 526 (1178)
Q Consensus 458 ----~r~~i~~v~Q~~~--l-~~~ti~~ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~g~~-t~~~~~g~~lSgG 526 (1178)
.++.++|++|+|. + +..|+.+|+.+.. ......+. ...+.+.++.+ |++ +........||||
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~l~~l--~l~~~~~~~~~~~LSgG 152 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RAAAHDWLEEV--EIDPTRIDDLPRAFSGG 152 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHH-----HHHHHHHHHHc--CCChhhhhcCchhcCHH
Confidence 2467999999984 2 3458888885321 10111111 12334556666 444 5677788899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecC
Q 001041 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603 (1178)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 603 (1178)
||||++||||++.+|++|||||||++||+.+.+.+.+.+++..+ +.|+|+|||+++.+.. ||++++|++|++++.|+
T Consensus 153 ~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~ 232 (253)
T TIGR02323 153 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGL 232 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999987643 7899999999999875 99999999999999999
Q ss_pred hhHHhcCCCchHH
Q 001041 604 HSKLVEDPEGAYS 616 (1178)
Q Consensus 604 ~~~l~~~~~~~~~ 616 (1178)
++++..++...|.
T Consensus 233 ~~~~~~~~~~~~~ 245 (253)
T TIGR02323 233 TDQVLDDPQHPYT 245 (253)
T ss_pred HHHHhcCCCCHHH
Confidence 9998765444444
No 307
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=1.3e-37 Score=336.38 Aligned_cols=208 Identities=30% Similarity=0.474 Sum_probs=174.3
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHH---HHh
Q 001041 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ---WIR 459 (1178)
Q Consensus 384 i~~~~~~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~---~~r 459 (1178)
++++|+++.|+... ..++|+|+||++++||+++|+|+||||||||+++|.|+++|++|+|.++|.++...+.. ..+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 68999999996421 25699999999999999999999999999999999999999999999999999876643 457
Q ss_pred cceEEEcCCCCCCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHH
Q 001041 460 KKIGLVSQEPVLFT-GSIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1178)
Q Consensus 460 ~~i~~v~Q~~~l~~-~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lAR 535 (1178)
+.++|++|+|.+|. .|+.||+.++.. ..+.++... .+.+.++.+ |++........+||||||||++|||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~lS~G~~qrv~lar 154 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARE-----RARAMLEAV--GLGDHLDYYPHNLSGGQKQRVAIAR 154 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHH-----HHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHH
Confidence 88999999998886 799999987532 122222221 122334444 5555566667899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhccCEEEEEeCCEE
Q 001041 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKI 598 (1178)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i 598 (1178)
|++++|+++||||||++||+++.+.+.+.++++.+ ++|+|++||+++....||+|++|++|++
T Consensus 155 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 155 ALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999988763 7999999999997777999999999986
No 308
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-37 Score=322.25 Aligned_cols=170 Identities=34% Similarity=0.640 Sum_probs=156.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
++++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|.|+++|++|+|.++|.++...+ ..+|++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (173)
T cd03230 1 IEVRNLSKRYGK---KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIG 76 (173)
T ss_pred CEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEE
Confidence 468999999963 36999999999999999999999999999999999999999999999999987665 56778999
Q ss_pred EEcCCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCC
Q 001041 464 LVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1178)
Q Consensus 464 ~v~Q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~ 542 (1178)
|++|+|.+|.+ |++||+. ||||||||++||||++.+|+
T Consensus 77 ~~~q~~~~~~~~tv~~~~~-----------------------------------------LS~G~~qrv~laral~~~p~ 115 (173)
T cd03230 77 YLPEEPSLYENLTVRENLK-----------------------------------------LSGGMKQRLALAQALLHDPE 115 (173)
T ss_pred EEecCCccccCCcHHHHhh-----------------------------------------cCHHHHHHHHHHHHHHcCCC
Confidence 99999998875 9999984 99999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhh-ccCEEEEEeCCEE
Q 001041 543 ILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKI 598 (1178)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i 598 (1178)
++||||||++||+.+.+.+.+.++++. ++.|+|++||+.+.+. .||++++|++|++
T Consensus 116 illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 116 LLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 999999999999999999999998875 4589999999999887 5999999999974
No 309
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=3.2e-37 Score=340.62 Aligned_cols=216 Identities=29% Similarity=0.426 Sum_probs=176.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC----CCCcEEECCeecCCCCHHHH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP----QAGEVLIDGINLKEFQLQWI 458 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~----~~G~i~i~g~~~~~~~~~~~ 458 (1178)
.++++|++++| + +++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++... +..
T Consensus 4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALR 77 (254)
T ss_pred EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccc
Confidence 48999999999 2 3599999999999999999999999999999999999999 999999999988632 222
Q ss_pred hcceEEEcCCCC-CCc--ccHHHHHhcC----CCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHH
Q 001041 459 RKKIGLVSQEPV-LFT--GSIKDNIAYG----KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1178)
Q Consensus 459 r~~i~~v~Q~~~-l~~--~ti~~ni~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri 531 (1178)
++.++|++|+|. .|. .|+.+|+.+. .....++++++.++..++.+ .++.++....+||||||||+
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------~~~~~~~~~~~LS~Gq~qrv 149 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLEN--------AARVLKLYPFEMSGGMLQRM 149 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCC--------hhhhhhcCCcccCHHHHHHH
Confidence 457999999984 343 5888887532 11112233444444333211 12246777789999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHh
Q 001041 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLV 608 (1178)
Q Consensus 532 ~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 608 (1178)
+||||++.+|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus 150 ~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 150 MIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999988753 689999999999986 59999999999999999999987
Q ss_pred cCCC
Q 001041 609 EDPE 612 (1178)
Q Consensus 609 ~~~~ 612 (1178)
+++.
T Consensus 230 ~~~~ 233 (254)
T PRK10418 230 NAPK 233 (254)
T ss_pred hCCC
Confidence 6543
No 310
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=3.1e-37 Score=316.92 Aligned_cols=163 Identities=30% Similarity=0.493 Sum_probs=150.1
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
|+++|++++|+.. +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++++
T Consensus 1 i~~~~~~~~~~~~--~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 67 (166)
T cd03223 1 IELENLSLATPDG--RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLL 67 (166)
T ss_pred CEEEEEEEEcCCC--CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEE
Confidence 4689999999632 46999999999999999999999999999999999999999999999873 5899
Q ss_pred EEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCE
Q 001041 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1178)
Q Consensus 464 ~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~i 543 (1178)
|++|++.+++.|++||+.++ ....||||||||++||||++++|++
T Consensus 68 ~~~q~~~~~~~tv~~nl~~~-----------------------------------~~~~LS~G~~~rv~laral~~~p~~ 112 (166)
T cd03223 68 FLPQRPYLPLGTLREQLIYP-----------------------------------WDDVLSGGEQQRLAFARLLLHKPKF 112 (166)
T ss_pred EECCCCccccccHHHHhhcc-----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 99999999999999999863 2468999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCC
Q 001041 544 LLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRG 596 (1178)
Q Consensus 544 lllDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G 596 (1178)
+||||||++||+++.+.+.+.++++ ++|+|++||+++....||++++|++|
T Consensus 113 lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~ 163 (166)
T cd03223 113 VFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGE 163 (166)
T ss_pred EEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCC
Confidence 9999999999999999999999876 58999999999988889999999876
No 311
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-37 Score=322.01 Aligned_cols=172 Identities=42% Similarity=0.678 Sum_probs=158.1
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCC--HHHHhcc
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ--LQWIRKK 461 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~--~~~~r~~ 461 (1178)
|+++|++++|+. +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ ....++.
T Consensus 1 i~~~~l~~~~~~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (178)
T cd03229 1 LELKNVSKRYGQ---KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRR 77 (178)
T ss_pred CEEEEEEEEECC---eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhc
Confidence 468999999963 46999999999999999999999999999999999999999999999999998775 5567889
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccC
Q 001041 462 IGLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1178)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~ 540 (1178)
++|++|+|.+|. .|++||+.+. ||||||||++||||++++
T Consensus 78 i~~~~q~~~~~~~~t~~~~l~~~---------------------------------------lS~G~~qr~~la~al~~~ 118 (178)
T cd03229 78 IGMVFQDFALFPHLTVLENIALG---------------------------------------LSGGQQQRVALARALAMD 118 (178)
T ss_pred EEEEecCCccCCCCCHHHheeec---------------------------------------CCHHHHHHHHHHHHHHCC
Confidence 999999998885 5999999753 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCE
Q 001041 541 PRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGK 597 (1178)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~ 597 (1178)
|+++||||||++||+.+...+.+.++++.+ ++|+|++||+++.+. .||++++|++|+
T Consensus 119 p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 119 PDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 999999999999999999999999988764 589999999999998 499999999885
No 312
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.1e-37 Score=330.48 Aligned_cols=202 Identities=33% Similarity=0.517 Sum_probs=168.7
Q ss_pred eEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCC----HHHHhcceE
Q 001041 388 DVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ----LQWIRKKIG 463 (1178)
Q Consensus 388 ~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~----~~~~r~~i~ 463 (1178)
|++++|++ ..+ |+||++++ |+++|+||||||||||+++|+|+++|++|+|.++|.++.... ....+++++
T Consensus 5 ~l~~~~~~---~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 78 (214)
T cd03297 5 DIEKRLPD---FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIG 78 (214)
T ss_pred eeeEecCC---eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEE
Confidence 89999964 234 99999999 999999999999999999999999999999999999886432 334677899
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCC
Q 001041 464 LVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1178)
Q Consensus 464 ~v~Q~~~l~~-~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~ 542 (1178)
|++|++.+|. .|++||+.++......+.. ...+.+.++.+ |++........+||||||||++||||++.+|+
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 151 (214)
T cd03297 79 LVFQQYALFPHLNVRENLAFGLKRKRNRED-----RISVDELLDLL--GLDHLLNRYPAQLSGGEKQRVALARALAAQPE 151 (214)
T ss_pred EEecCCccCCCCCHHHHHHHHHhhCCHHHH-----HHHHHHHHHHc--CCHhHhhcCcccCCHHHHHHHHHHHHHhcCCC
Confidence 9999999885 6999999875432222111 11223444444 56666677888999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEec
Q 001041 543 ILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g 602 (1178)
++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+. .||++++|++|++++.|
T Consensus 152 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 152 LLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999988753 689999999999986 59999999999998765
No 313
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=3.9e-37 Score=324.98 Aligned_cols=183 Identities=29% Similarity=0.500 Sum_probs=161.1
Q ss_pred cEEEEeEEEECCCC---CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC--CCCCCcEEECCeecCCCCHHH
Q 001041 383 DIELRDVYFSYPAR---PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY--DPQAGEVLIDGINLKEFQLQW 457 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~---~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~--~~~~G~i~i~g~~~~~~~~~~ 457 (1178)
.|+++|++++|+.. .++++|+|+||++++||+++|+||+|||||||+++|+|++ +|.+|+|.+||+++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 48899999999742 0256999999999999999999999999999999999999 9999999999998864 35
Q ss_pred HhcceEEEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHH
Q 001041 458 IRKKIGLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1178)
Q Consensus 458 ~r~~i~~v~Q~~~l~~-~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARa 536 (1178)
.+++++|++|++.+|. .|++||+.++.. +. .||||||||++||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~-------------------~~---------------~LS~G~~qrv~lara 125 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAK-------------------LR---------------GLSGGERKRVSIALE 125 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHHH-------------------hc---------------cCCHHHHHHHHHHHH
Confidence 6788999999998886 599999975310 00 799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcc-hhh-ccCEEEEEeCCEEEEec
Q 001041 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLS-TVR-NADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~-~~~-~~d~i~~l~~G~i~~~g 602 (1178)
++++|+++||||||++||+.+.+.+.+.++++. +++|+|++||+++ .+. .||++++|++|++++.|
T Consensus 126 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 126 LVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 999999999999999999999999999998875 4789999999997 454 59999999999998754
No 314
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=4.8e-37 Score=332.90 Aligned_cols=205 Identities=26% Similarity=0.437 Sum_probs=172.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... +..++
T Consensus 1 l~l~~v~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~ 73 (223)
T TIGR03740 1 LETKNLSKRFGK---QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIG 73 (223)
T ss_pred CEEEeEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEE
Confidence 468999999963 46999999999999999999999999999999999999999999999998875322 24799
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccC
Q 001041 464 LVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1178)
Q Consensus 464 ~v~Q~~~l~~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~ 540 (1178)
|+||++.++. .|++||+.++.. ..+++++...++..+ ++........+||||||||++||||++.+
T Consensus 74 ~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~~rv~laral~~~ 142 (223)
T TIGR03740 74 SLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVD-----------LTNTGKKKAKQFSLGMKQRLGIAIALLNH 142 (223)
T ss_pred EEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcC-----------CcHHHhhhHhhCCHHHHHHHHHHHHHhcC
Confidence 9999998875 699999986421 123344444444443 33334445578999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhH
Q 001041 541 PRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSK 606 (1178)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~ 606 (1178)
|+++||||||++||+.+.+.+.+.++++. +++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 143 p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 143 PKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999999999998875 4789999999999985 599999999999999998764
No 315
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-37 Score=316.52 Aligned_cols=220 Identities=28% Similarity=0.499 Sum_probs=188.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHH-hcce
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI-RKKI 462 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~-r~~i 462 (1178)
++.++++.+|+. -.+++|+||++++||+++|+|||||||||+.++|.|+|+|++|+|.++|.|+..++++.+ |..|
T Consensus 5 L~v~~l~k~FGG---l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 5 LEVRGLSKRFGG---LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeccceeecCC---EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 568999999963 469999999999999999999999999999999999999999999999999999998875 5679
Q ss_pred EEEcCCCCCC-cccHHHHHhcCCCCC------------CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHH
Q 001041 463 GLVSQEPVLF-TGSIKDNIAYGKDDA------------TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1178)
Q Consensus 463 ~~v~Q~~~l~-~~ti~~ni~~~~~~~------------~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkq 529 (1178)
+--+|.+.+| +.||-||+..+.... ..++-+...+ +.+.++.+ |+...-.+...+||+||+.
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~---A~~~Le~v--gL~~~a~~~A~~LsyG~qR 156 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARER---ARELLEFV--GLGELADRPAGNLSYGQQR 156 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHH---HHHHHHHc--CCchhhcchhhcCChhHhH
Confidence 9999999999 569999999863211 0111111112 22333333 7888888888899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhH
Q 001041 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606 (1178)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 606 (1178)
|+.|||||..+|++||||||.+++.+.-...+.+.|+++.+ +.|+++|.|+++.+.. ||||+||+.|+++.+|+|+|
T Consensus 157 ~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~e 236 (250)
T COG0411 157 RLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEE 236 (250)
T ss_pred HHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHH
Confidence 99999999999999999999999999998899999998875 4899999999999865 99999999999999999999
Q ss_pred HhcCC
Q 001041 607 LVEDP 611 (1178)
Q Consensus 607 l~~~~ 611 (1178)
..+++
T Consensus 237 V~~dp 241 (250)
T COG0411 237 VRNNP 241 (250)
T ss_pred HhcCH
Confidence 98763
No 316
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=4.7e-37 Score=321.30 Aligned_cols=172 Identities=24% Similarity=0.459 Sum_probs=156.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCH-HHHhcc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRKK 461 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~-~~~r~~ 461 (1178)
.++++|++++| +|+++||++++||+++|+|+||||||||+++|.|+++|++|+|.++|.++...+. ...|++
T Consensus 4 ~l~~~~l~~~~-------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 4 VLEVRGLSVKG-------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred EEEEeccEEEe-------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence 48899999988 7999999999999999999999999999999999999999999999999988764 456788
Q ss_pred eEEEcCCC----CCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHh
Q 001041 462 IGLVSQEP----VLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1178)
Q Consensus 462 i~~v~Q~~----~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal 537 (1178)
++|++|++ .++..|++||+.++.. ||||||||++||||+
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~~~-------------------------------------LS~G~~qrl~la~al 119 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALSSL-------------------------------------LSGGNQQKVVLARWL 119 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHHhh-------------------------------------cCHHHHHHHHHHHHH
Confidence 99999995 3446899999986421 999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEE
Q 001041 538 LKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKI 598 (1178)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i 598 (1178)
+.+|+++||||||++||+++.+.+.+.++++. +++|+|++||+++.+.. ||++++|++|++
T Consensus 120 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 120 ARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred ccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999998875 47899999999998876 999999999974
No 317
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.3e-37 Score=323.60 Aligned_cols=182 Identities=26% Similarity=0.442 Sum_probs=159.8
Q ss_pred cEEEEeEEEECCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC--CCCCCcEEECCeecCCCCHHHHh
Q 001041 383 DIELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY--DPQAGEVLIDGINLKEFQLQWIR 459 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~--~~~~G~i~i~g~~~~~~~~~~~r 459 (1178)
.|+++|+++.|++.. ++++|+|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|.++. ..++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 488999999997421 256999999999999999999999999999999999986 489999999999875 4567
Q ss_pred cceEEEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhc
Q 001041 460 KKIGLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1178)
Q Consensus 460 ~~i~~v~Q~~~l~~-~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~ 538 (1178)
++++|++|+|.++. .|++||+.++.. ++ +||||||||++||||++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~----------~~------------------------~LSgGe~qrv~la~al~ 124 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSAL----------LR------------------------GLSVEQRKRLTIGVELA 124 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHHH----------Hh------------------------cCCHHHhHHHHHHHHHh
Confidence 78999999998876 599999985310 00 89999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcch--hhccCEEEEEeC-CEEEEec
Q 001041 539 KDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLST--VRNADMIAVIHR-GKIVEKG 602 (1178)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~--~~~~d~i~~l~~-G~i~~~g 602 (1178)
++|+++||||||++||+.+.+.+.+.++++. +++|+|++||+++. ...||+|++|++ |++++.|
T Consensus 125 ~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 125 AKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred cCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 9999999999999999999999999998865 37899999999984 456999999999 9999865
No 318
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.6e-36 Score=326.06 Aligned_cols=227 Identities=30% Similarity=0.479 Sum_probs=188.1
Q ss_pred cccEEEEeEEEECCCCCC--------CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCC
Q 001041 381 RGDIELRDVYFSYPARPN--------EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE 452 (1178)
Q Consensus 381 ~~~i~~~~~~~~y~~~~~--------~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~ 452 (1178)
..-++.+|+...||-+.. ..+++++||++++||.++|||+||||||||-.+|+|++++. |+|.++|.++..
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~ 352 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDG 352 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccc
Confidence 345888999999975422 34789999999999999999999999999999999999776 999999999998
Q ss_pred CCHHH---HhcceEEEcCCCC--C-CcccHHHHHhcC----CCCCCH----HHHHHHHHHhcHHHHHHhCCCCccchhcC
Q 001041 453 FQLQW---IRKKIGLVSQEPV--L-FTGSIKDNIAYG----KDDATT----EEIRVATELANAAKFIDKLPQGIDTLVGE 518 (1178)
Q Consensus 453 ~~~~~---~r~~i~~v~Q~~~--l-~~~ti~~ni~~~----~~~~~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~ 518 (1178)
.+.+. +|+++-+|+|||+ | -..||.+-|.=| .|..+. +++.++++.++++. .....
T Consensus 353 ~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp----------~~r~R 422 (534)
T COG4172 353 LSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDP----------ATRNR 422 (534)
T ss_pred cChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCCh----------hHhhc
Confidence 88765 5789999999996 2 245776666544 233332 34444444444332 23467
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeC
Q 001041 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHR 595 (1178)
Q Consensus 519 ~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~ 595 (1178)
..+.+|||||||||||||+.-+|++++|||||||||.....+|.+.++++.+ +-+-++|+|++..++. ||+|+||.+
T Consensus 423 YPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~ 502 (534)
T COG4172 423 YPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRD 502 (534)
T ss_pred CCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeC
Confidence 7789999999999999999999999999999999999999999999988754 5588999999999976 999999999
Q ss_pred CEEEEecChhHHhcCCCchHHHH
Q 001041 596 GKIVEKGTHSKLVEDPEGAYSQL 618 (1178)
Q Consensus 596 G~i~~~g~~~~l~~~~~~~~~~~ 618 (1178)
|+|||+|+.+++.+++...|.+-
T Consensus 503 GkiVE~G~~~~if~~P~~~YT~~ 525 (534)
T COG4172 503 GKIVEQGPTEAVFANPQHEYTRA 525 (534)
T ss_pred CEEeeeCCHHHHhcCCCcHHHHH
Confidence 99999999999999988888754
No 319
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=1.5e-36 Score=322.37 Aligned_cols=185 Identities=29% Similarity=0.499 Sum_probs=161.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcc--CCCCCCcEEECCeecCCCCHHHH-hc
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF--YDPQAGEVLIDGINLKEFQLQWI-RK 460 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~--~~~~~G~i~i~g~~~~~~~~~~~-r~ 460 (1178)
++++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|.|+ ++|++|+|.+||.++.+.+.... |.
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (200)
T cd03217 1 LEIKDLHVSVGG---KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARL 77 (200)
T ss_pred CeEEEEEEEeCC---EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhC
Confidence 468999999963 4699999999999999999999999999999999999 58999999999999988876554 55
Q ss_pred ceEEEcCCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 461 KIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 461 ~i~~v~Q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
+++|+||+|.++.+ ++++|+ .. ...+||||||||++||||+++
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~l-------------------------~~-----------~~~~LS~G~~qrv~laral~~ 121 (200)
T cd03217 78 GIFLAFQYPPEIPGVKNADFL-------------------------RY-----------VNEGFSGGEKKRNEILQLLLL 121 (200)
T ss_pred cEEEeecChhhccCccHHHHH-------------------------hh-----------ccccCCHHHHHHHHHHHHHhc
Confidence 69999999988865 555554 00 114799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc-CCeEEEEecCcchhh--ccCEEEEEeCCEEEEecChhHHh
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVR--NADMIAVIHRGKIVEKGTHSKLV 608 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~--~~d~i~~l~~G~i~~~g~~~~l~ 608 (1178)
+|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+. .||++++|++|++++.| +.++.
T Consensus 122 ~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 122 EPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 9999999999999999999999999988754 789999999999987 69999999999999998 44453
No 320
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-36 Score=338.96 Aligned_cols=210 Identities=25% Similarity=0.406 Sum_probs=171.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...+..+
T Consensus 6 ~l~~~~l~~~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i 80 (272)
T PRK15056 6 GIVVNDVTVTWRN--GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLV 80 (272)
T ss_pred eEEEEeEEEEecC--CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceE
Confidence 4899999999963 2469999999999999999999999999999999999999999999999988742 1123469
Q ss_pred EEEcCCCCC---CcccHHHHHhcCCCC-------CC---HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHH
Q 001041 463 GLVSQEPVL---FTGSIKDNIAYGKDD-------AT---TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1178)
Q Consensus 463 ~~v~Q~~~l---~~~ti~~ni~~~~~~-------~~---~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkq 529 (1178)
+|+||+|.+ +..++++|+.++... .. .+++..+++.. |+.........+|||||||
T Consensus 81 ~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LSgG~~q 149 (272)
T PRK15056 81 AYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARV-----------DMVEFRHRQIGELSGGQKK 149 (272)
T ss_pred EEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHc-----------CChhHhcCCcccCCHHHHH
Confidence 999999864 456899998754210 01 12223333333 3333344556789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHH
Q 001041 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 607 (1178)
|++||||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+++++ +|++++.|+++++
T Consensus 150 rv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 150 RVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 9999999999999999999999999999999999998875 4789999999999875 59999777 8999999999987
Q ss_pred hc
Q 001041 608 VE 609 (1178)
Q Consensus 608 ~~ 609 (1178)
..
T Consensus 229 ~~ 230 (272)
T PRK15056 229 FT 230 (272)
T ss_pred cC
Confidence 54
No 321
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=5.7e-37 Score=328.51 Aligned_cols=198 Identities=29% Similarity=0.504 Sum_probs=161.9
Q ss_pred EEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCH----HHHhcc
Q 001041 386 LRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL----QWIRKK 461 (1178)
Q Consensus 386 ~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~----~~~r~~ 461 (1178)
++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++. ...+++
T Consensus 1 i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 77 (206)
T TIGR03608 1 LKNISKKFGD---KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREK 77 (206)
T ss_pred CcceEEEECC---EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhC
Confidence 4689999963 469999999999999999999999999999999999999999999999999765432 235678
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhc
Q 001041 462 IGLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1178)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~ 538 (1178)
++|++|+|.+|. .|++||+.++... ...++..+ .+.+.++.+ |++........+||||||||++||||++
T Consensus 78 i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~lS~G~~qr~~laral~ 150 (206)
T TIGR03608 78 LGYLFQNFALIENETVEENLDLGLKYKKLSKKEKRE-----KKKEALEKV--GLNLKLKQKIYELSGGEQQRVALARAIL 150 (206)
T ss_pred eeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CchhhhcCChhhCCHHHHHHHHHHHHHH
Confidence 999999999886 7999999874321 11111111 112223332 4444456667789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc-CCeEEEEecCcchhhccCEEEEE
Q 001041 539 KDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRNADMIAVI 593 (1178)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~~d~i~~l 593 (1178)
++|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+..||+|++|
T Consensus 151 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 151 KDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred cCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 99999999999999999999999999988753 78999999999988889999875
No 322
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=2.5e-36 Score=333.98 Aligned_cols=218 Identities=24% Similarity=0.417 Sum_probs=175.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcc--CCCCCCcEEECCeecCCCCHHHHhc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF--YDPQAGEVLIDGINLKEFQLQWIRK 460 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~--~~~~~G~i~i~g~~~~~~~~~~~r~ 460 (1178)
.++++|+++.|++ +++|+|+||++++||+++|+|+||||||||+++|.|+ ++|++|+|.++|.++...+....+.
T Consensus 7 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 7 ILEIKNLHASVNE---NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred eEEEEeEEEEeCC---EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence 4899999999963 3699999999999999999999999999999999998 6899999999999998887666554
Q ss_pred -ceEEEcCCCCCCcc-cHHHHHhcCCCCC------CHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCC-CCChHHHHH
Q 001041 461 -KIGLVSQEPVLFTG-SIKDNIAYGKDDA------TTEEIRVATELANAAKFIDKLPQGID-TLVGEHGT-QLSGGQKQR 530 (1178)
Q Consensus 461 -~i~~v~Q~~~l~~~-ti~~ni~~~~~~~------~~~~~~~~~~~~~~~~~i~~~~~g~~-t~~~~~g~-~lSgGqkqr 530 (1178)
.++|++|++.++.+ |+++|+.++.... .+....+.. ..+.+.++.+ |+. +..+.... .||||||||
T Consensus 84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~--~l~~~~~~~~~~~~LSgG~~qr 159 (252)
T CHL00131 84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFL--EIINEKLKLV--GMDPSFLSRNVNEGFSGGEKKR 159 (252)
T ss_pred eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHH--HHHHHHHHHc--CCchhhhccccccCCCHHHHHH
Confidence 58999999998864 7999987642100 000000000 1112223332 333 33445544 599999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc--cCEEEEEeCCEEEEecChhHH
Q 001041 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN--ADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~--~d~i~~l~~G~i~~~g~~~~l 607 (1178)
++||||++++|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++.+
T Consensus 160 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 239 (252)
T CHL00131 160 NEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAELA 239 (252)
T ss_pred HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChhhh
Confidence 999999999999999999999999999999999998875 47899999999998875 899999999999999998743
No 323
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=2.3e-36 Score=333.61 Aligned_cols=219 Identities=25% Similarity=0.369 Sum_probs=168.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC--CCCCCcEEECCeecCCCCHHHHh-c
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY--DPQAGEVLIDGINLKEFQLQWIR-K 460 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~--~~~~G~i~i~g~~~~~~~~~~~r-~ 460 (1178)
|+++|+++.|++ .++|+|+||+|++||+++|+|+||||||||+++|+|++ +|++|+|.++|.++...+....+ .
T Consensus 2 i~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (248)
T PRK09580 2 LSIKDLHVSVED---KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGE 78 (248)
T ss_pred eEEEEEEEEeCC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhc
Confidence 789999999963 36999999999999999999999999999999999994 69999999999999887766554 5
Q ss_pred ceEEEcCCCCCCcc-cHHHHHhcCCCCC---CHHH-HHHHHHHhcHHHHHH--hCCCCccchhcCCCCCCChHHHHHHHH
Q 001041 461 KIGLVSQEPVLFTG-SIKDNIAYGKDDA---TTEE-IRVATELANAAKFID--KLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1178)
Q Consensus 461 ~i~~v~Q~~~l~~~-ti~~ni~~~~~~~---~~~~-~~~~~~~~~~~~~i~--~~~~g~~t~~~~~g~~lSgGqkqri~l 533 (1178)
.++|++|+|.++.. |..+++.+..... ...+ .........+.+.++ .+|+++.+... ..+||||||||++|
T Consensus 79 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--~~~LS~G~~qrv~l 156 (248)
T PRK09580 79 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV--NVGFSGGEKKRNDI 156 (248)
T ss_pred ceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC--CCCCCHHHHHHHHH
Confidence 79999999987653 5555543211100 0000 000000001112222 23333333211 13799999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc-CCeEEEEecCcchhhc--cCEEEEEeCCEEEEecChhHH
Q 001041 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN--ADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~--~d~i~~l~~G~i~~~g~~~~l 607 (1178)
|||++++|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. +|+|++|++|++++.|+++..
T Consensus 157 aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 233 (248)
T PRK09580 157 LQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV 233 (248)
T ss_pred HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999887654 6899999999999876 899999999999999988754
No 324
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.4e-37 Score=294.06 Aligned_cols=216 Identities=31% Similarity=0.524 Sum_probs=182.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCC----------
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE---------- 452 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~---------- 452 (1178)
.++++|+..+|+. ..+|+++||+.++|+.+.|+|.|||||||++++|.=+-.|+.|.|.++|..++-
T Consensus 6 ~l~v~dlHK~~G~---~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ 82 (256)
T COG4598 6 ALEVEDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKP 82 (256)
T ss_pred ceehhHHHhhccc---chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeee
Confidence 5889999999974 359999999999999999999999999999999999999999999999987632
Q ss_pred ---CCHHHHhcceEEEcCCCCCC-cccHHHHHhcCCCC-----CCHHHHH---HHHHHhcHHHHHHhCCCCccchhcCCC
Q 001041 453 ---FQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYGKDD-----ATTEEIR---VATELANAAKFIDKLPQGIDTLVGEHG 520 (1178)
Q Consensus 453 ---~~~~~~r~~i~~v~Q~~~l~-~~ti~~ni~~~~~~-----~~~~~~~---~~~~~~~~~~~i~~~~~g~~t~~~~~g 520 (1178)
-..+.+|.++++|+|+-.|. ..|+-||+.- .|- ...+.++ ..+.++ |+........
T Consensus 83 ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViE-aPvhVLg~~k~ea~e~Ae~~L~kV-----------Gi~ek~~~YP 150 (256)
T COG4598 83 ADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIE-APVHVLGVSKAEAIERAEKYLAKV-----------GIAEKADAYP 150 (256)
T ss_pred CCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHh-cchHhhcCCHHHHHHHHHHHHHHh-----------CchhhhhcCc
Confidence 12456889999999998887 4799999873 231 1122222 223333 5555555667
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEE
Q 001041 521 TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKI 598 (1178)
Q Consensus 521 ~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i 598 (1178)
..|||||+||++|||||..+|+++|+|||||||||+-.-.+.+.++++. .++|.++|||-+.+.++ +.+|+.|++|.|
T Consensus 151 ~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~i 230 (256)
T COG4598 151 AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKI 230 (256)
T ss_pred cccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeeccee
Confidence 8999999999999999999999999999999999998888888888775 58999999999999987 799999999999
Q ss_pred EEecChhHHhcCCCc
Q 001041 599 VEKGTHSKLVEDPEG 613 (1178)
Q Consensus 599 ~~~g~~~~l~~~~~~ 613 (1178)
-|+|+|+++..++..
T Consensus 231 EE~G~P~qvf~nP~S 245 (256)
T COG4598 231 EEEGPPEQVFGNPQS 245 (256)
T ss_pred cccCChHHHhcCCCC
Confidence 999999999987654
No 325
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=2.2e-36 Score=329.05 Aligned_cols=207 Identities=29% Similarity=0.452 Sum_probs=166.0
Q ss_pred cccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC----CCCcEEECCeecCCCCHHHHhcceEEEcCCCC-CCc--
Q 001041 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP----QAGEVLIDGINLKEFQLQWIRKKIGLVSQEPV-LFT-- 473 (1178)
Q Consensus 401 ~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~----~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~-l~~-- 473 (1178)
+|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... ...+++++|++|+|. .|.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 57899999999999999999999999999999999999 899999999988654 223468999999995 343
Q ss_pred ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCcc---chhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 001041 474 GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGID---TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDE 548 (1178)
Q Consensus 474 ~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~---t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe 548 (1178)
.|+.+|+.+.... ...++.. ..+.+.++.+ |++ +.......+||||||||++||||++++|+++||||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDE 151 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQAR-----ALILEALEAV--GLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADE 151 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHH-----HHHHHHHHHc--CCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 5899998653211 1111110 0112223332 332 45667778999999999999999999999999999
Q ss_pred CCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcCCCchHH
Q 001041 549 ATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616 (1178)
Q Consensus 549 ~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 616 (1178)
||++||+.+.+.+.+.++++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++...+...|.
T Consensus 152 Pt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~ 222 (230)
T TIGR02770 152 PTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETT 222 (230)
T ss_pred CccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCCHHH
Confidence 9999999999999999988753 689999999999986 5999999999999999999999765444333
No 326
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=3.4e-36 Score=330.70 Aligned_cols=210 Identities=25% Similarity=0.435 Sum_probs=174.4
Q ss_pred EEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEE
Q 001041 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGL 464 (1178)
Q Consensus 385 ~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~ 464 (1178)
+++|+++. .+|+|+||++++||+++|+|+||||||||+++|.|++++ +|+|.++|.++...+...+++.++|
T Consensus 2 ~~~~l~~~-------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~ 73 (248)
T PRK03695 2 QLNDVAVS-------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAY 73 (248)
T ss_pred cccccchh-------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEE
Confidence 46677764 279999999999999999999999999999999999864 8999999999988888888888999
Q ss_pred EcCCCC-CCcccHHHHHhcCCCCC-CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc---
Q 001041 465 VSQEPV-LFTGSIKDNIAYGKDDA-TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK--- 539 (1178)
Q Consensus 465 v~Q~~~-l~~~ti~~ni~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~--- 539 (1178)
++|++. ++..|+++|+.++.+.. ..++.. ..+.+.++.+ |++.........||||||||++||||++.
T Consensus 74 v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~ 146 (248)
T PRK03695 74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVA-----SALNEVAEAL--GLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWP 146 (248)
T ss_pred ecccCccCCCccHHHHHHhcCccCCCcHHHH-----HHHHHHHHHc--CCHhHhcCCcccCCHHHHHHHHHHHHHhcccc
Confidence 999985 45789999999864321 111111 1122334443 55555566778999999999999999997
Q ss_pred ----CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhc
Q 001041 540 ----DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVE 609 (1178)
Q Consensus 540 ----~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1178)
+|+++||||||++||+.+.+.+.+.++++. +++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 147 ~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 147 DINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred ccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 679999999999999999999999998875 4789999999999775 599999999999999999988754
No 327
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-36 Score=372.60 Aligned_cols=228 Identities=28% Similarity=0.453 Sum_probs=186.0
Q ss_pred cEEEEeEEEECCCCC--------CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCC
Q 001041 383 DIELRDVYFSYPARP--------NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ 454 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~--------~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~ 454 (1178)
.++++|+++.|+.+. ...+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 489999999996321 236999999999999999999999999999999999999999999999999998765
Q ss_pred HH---HHhcceEEEcCCCC--CC-cccHHHHHhcCCC--C-CCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCC
Q 001041 455 LQ---WIRKKIGLVSQEPV--LF-TGSIKDNIAYGKD--D-ATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLS 524 (1178)
Q Consensus 455 ~~---~~r~~i~~v~Q~~~--l~-~~ti~~ni~~~~~--~-~~~~~~~~~~~~~~~~~~i~~~~~g~~-t~~~~~g~~lS 524 (1178)
.. .+|++|+||+|+|. ++ ..||.+|+.++.. . ...++.. ..+.+.++.+ |++ ........+||
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~~L~~~--gL~~~~~~~~~~~LS 465 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAA-----ARVAWLLERV--GLLPEHAWRYPHEFS 465 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHH-----HHHHHHHHHc--CCCHHHhhCCcccCC
Confidence 43 35678999999983 55 4699999976421 1 1111111 1112333333 453 34456677899
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEe
Q 001041 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEK 601 (1178)
Q Consensus 525 gGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~ 601 (1178)
||||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+|++.
T Consensus 466 gGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~ 545 (623)
T PRK10261 466 GGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEI 545 (623)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999988753 6899999999999865 999999999999999
Q ss_pred cChhHHhcCCCchHHH
Q 001041 602 GTHSKLVEDPEGAYSQ 617 (1178)
Q Consensus 602 g~~~~l~~~~~~~~~~ 617 (1178)
|+++++..++...|.+
T Consensus 546 g~~~~i~~~p~~~~~~ 561 (623)
T PRK10261 546 GPRRAVFENPQHPYTR 561 (623)
T ss_pred cCHHHHhcCCCCHHHH
Confidence 9999998766666654
No 328
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=4.6e-36 Score=329.09 Aligned_cols=208 Identities=25% Similarity=0.440 Sum_probs=174.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +..+
T Consensus 4 ~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i 69 (251)
T PRK09544 4 LVSLENVSVSFGQ---RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRI 69 (251)
T ss_pred EEEEeceEEEECC---ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCE
Confidence 4889999999963 4699999999999999999999999999999999999999999999987 3479
Q ss_pred EEEcCCCCCCc---ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 463 GLVSQEPVLFT---GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 463 ~~v~Q~~~l~~---~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
+|++|+|.++. .|+++|+.+. +...++++..+++..++.+. .......||||||||++||||++.
T Consensus 70 ~~v~q~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGq~qrv~laral~~ 137 (251)
T PRK09544 70 GYVPQKLYLDTTLPLTVNRFLRLR-PGTKKEDILPALKRVQAGHL-----------IDAPMQKLSGGETQRVLLARALLN 137 (251)
T ss_pred EEeccccccccccChhHHHHHhcc-ccccHHHHHHHHHHcCChHH-----------HhCChhhCCHHHHHHHHHHHHHhc
Confidence 99999997764 4899998753 23345566666666655443 334457899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcCCCchHH
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 616 (1178)
+|+++||||||++||+.+...+.+.++++.+ ++|+|++||+++.+. .||+|++|++ ++++.|+++++... ..+.
T Consensus 138 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~~--~~~~ 214 (251)
T PRK09544 138 RPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSLH--PEFI 214 (251)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhCC--HHHH
Confidence 9999999999999999999999999987753 789999999999985 4999999965 79999999998653 3344
Q ss_pred HHH
Q 001041 617 QLI 619 (1178)
Q Consensus 617 ~~~ 619 (1178)
+++
T Consensus 215 ~~~ 217 (251)
T PRK09544 215 SMF 217 (251)
T ss_pred HHh
Confidence 443
No 329
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=1.7e-36 Score=316.48 Aligned_cols=177 Identities=34% Similarity=0.592 Sum_probs=157.1
Q ss_pred EEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEE
Q 001041 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGL 464 (1178)
Q Consensus 385 ~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~ 464 (1178)
+++|++++|+. .++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+...++..++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 77 (180)
T cd03214 1 EVENLSVGYGG---RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAY 77 (180)
T ss_pred CeeEEEEEECC---eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhH
Confidence 46899999963 469999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEE
Q 001041 465 VSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRIL 544 (1178)
Q Consensus 465 v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~il 544 (1178)
++| +++..++.++ +.....+||||||||++||||++++|+++
T Consensus 78 ~~q---------------------------~l~~~gl~~~-----------~~~~~~~LS~G~~qrl~laral~~~p~ll 119 (180)
T cd03214 78 VPQ---------------------------ALELLGLAHL-----------ADRPFNELSGGERQRVLLARALAQEPPIL 119 (180)
T ss_pred HHH---------------------------HHHHcCCHhH-----------hcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 999 3444444333 33456789999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEec
Q 001041 545 LLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 545 llDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g 602 (1178)
||||||++||+++...+.+.++++.+ ++|+|++||+++.+. .||++++|++|++++.|
T Consensus 120 llDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 120 LLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999988754 689999999999985 59999999999998654
No 330
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-36 Score=299.05 Aligned_cols=213 Identities=25% Similarity=0.477 Sum_probs=181.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
|+.+|++++-. ++.+|+++||+++|||.++|+||||+|||||+++|.|++.|.+|++.++|+++++.+..++-++-+
T Consensus 2 i~a~nls~~~~---Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~ra 78 (259)
T COG4559 2 IRAENLSYSLA---GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRA 78 (259)
T ss_pred eeeeeeEEEee---cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhh
Confidence 67889998875 356999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCC-CcccHHHHHhcCCCCC----C--HHH--HHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHH
Q 001041 464 LVSQEPVL-FTGSIKDNIAYGKDDA----T--TEE--IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1178)
Q Consensus 464 ~v~Q~~~l-~~~ti~~ni~~~~~~~----~--~~~--~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lA 534 (1178)
+.||+..+ |.-|++|-+.+|.-.. . +++ ..+++..+++. .+ -++.-..||||||||+.||
T Consensus 79 VlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~----~l-------a~R~y~~LSGGEqQRVqlA 147 (259)
T COG4559 79 VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLS----GL-------AGRDYRTLSGGEQQRVQLA 147 (259)
T ss_pred hcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChh----hh-------hccchhhcCchHHHHHHHH
Confidence 99999875 8999999999986322 1 111 23444444332 22 2344467999999999999
Q ss_pred HHhcc------CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhH
Q 001041 535 RAILK------DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSK 606 (1178)
Q Consensus 535 Ral~~------~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~ 606 (1178)
|.|.+ ++++|+||||||+||....+.+.+..+++. .+..|+.|-|+++... .||||++|.+||++..|+|++
T Consensus 148 RvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~ 227 (259)
T COG4559 148 RVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQD 227 (259)
T ss_pred HHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHH
Confidence 99986 456999999999999999999998888875 4689999999999875 599999999999999999999
Q ss_pred HhcC
Q 001041 607 LVED 610 (1178)
Q Consensus 607 l~~~ 610 (1178)
.+..
T Consensus 228 vlt~ 231 (259)
T COG4559 228 VLTD 231 (259)
T ss_pred hcCH
Confidence 8764
No 331
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=5.4e-36 Score=318.59 Aligned_cols=195 Identities=25% Similarity=0.375 Sum_probs=165.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
++++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.... ..+|++++
T Consensus 1 l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (201)
T cd03231 1 LEADELTCERDG---RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLL 76 (201)
T ss_pred CEEEEEEEEeCC---ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheE
Confidence 468999999963 46999999999999999999999999999999999999999999999999886543 45778999
Q ss_pred EEcCCCCCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCC
Q 001041 464 LVSQEPVLF-TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1178)
Q Consensus 464 ~v~Q~~~l~-~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~ 542 (1178)
|++|++.++ ..|++||+.+..+...++++.++++..++.+. ......+||||||||++||||++++|+
T Consensus 77 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~laral~~~p~ 145 (201)
T cd03231 77 YLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGF-----------EDRPVAQLSAGQQRRVALARLLLSGRP 145 (201)
T ss_pred EeccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhh-----------hcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 999999876 68999999876543445555555555554332 233456899999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchh-hccCEEEEE
Q 001041 543 ILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTV-RNADMIAVI 593 (1178)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~-~~~d~i~~l 593 (1178)
++||||||++||+.+.+.+.+.+++.. +++|+|++||+...+ ..+|+++++
T Consensus 146 llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 146 LWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 999999999999999999999998764 478999999987765 458998877
No 332
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.1e-36 Score=288.82 Aligned_cols=210 Identities=28% Similarity=0.418 Sum_probs=174.8
Q ss_pred cEEEEeEEEECCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHH---HH
Q 001041 383 DIELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ---WI 458 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~---~~ 458 (1178)
-|++++++.+-+... .-.+|++++|.|++||.++||||||||||||+..+.|+-+|++|+|.+.|+++.+++.+ .+
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 367778877765432 34699999999999999999999999999999999999999999999999999999865 45
Q ss_pred h-cceEEEcCCCCCC-cccHHHHHhcCCCCCC---HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHH
Q 001041 459 R-KKIGLVSQEPVLF-TGSIKDNIAYGKDDAT---TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1178)
Q Consensus 459 r-~~i~~v~Q~~~l~-~~ti~~ni~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~l 533 (1178)
| +++++|+|.-+|. +.|--||+..+..-.. .+.... ..+.++.. |+...+.....+||||++||+||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~------A~~lL~~v--GLg~Rl~HyP~qLSGGEQQRVAi 157 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAG------AKALLEAV--GLGKRLTHYPAQLSGGEQQRVAL 157 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHH------HHHHHHHh--CcccccccCccccCchHHHHHHH
Confidence 5 6799999999876 7899999987543211 111111 12223332 77777777888999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhhccCEEEEEeCCEEEE
Q 001041 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRNADMIAVIHRGKIVE 600 (1178)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~ 600 (1178)
|||+...|+||+-||||-+||..|.+.|.+.+-.+. .+.|.++|||++....+|||++.|.+|++++
T Consensus 158 ARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 158 ARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceecc
Confidence 999999999999999999999999999988875543 4679999999999999999999999999975
No 333
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=6.5e-36 Score=306.11 Aligned_cols=159 Identities=33% Similarity=0.582 Sum_probs=147.2
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCH-HHHhcce
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRKKI 462 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~-~~~r~~i 462 (1178)
|+++|++++|++ .++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. +..++++
T Consensus 1 l~~~~l~~~~~~---~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i 77 (163)
T cd03216 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGI 77 (163)
T ss_pred CEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCe
Confidence 468999999964 369999999999999999999999999999999999999999999999999988775 4467789
Q ss_pred EEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCC
Q 001041 463 GLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1178)
Q Consensus 463 ~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~ 542 (1178)
+|++| ||||||||++||||++++|+
T Consensus 78 ~~~~q-------------------------------------------------------LS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 78 AMVYQ-------------------------------------------------------LSVGERQMVEIARALARNAR 102 (163)
T ss_pred EEEEe-------------------------------------------------------cCHHHHHHHHHHHHHhcCCC
Confidence 99999 99999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEE
Q 001041 543 ILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVE 600 (1178)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~ 600 (1178)
++||||||++||+++.+.+.+.++++. ++.|+|++||+++.+.. ||++++|++|++++
T Consensus 103 illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 103 LLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999998874 47899999999998765 99999999999875
No 334
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=5.8e-36 Score=325.19 Aligned_cols=194 Identities=32% Similarity=0.478 Sum_probs=160.8
Q ss_pred ccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCc-ccHHHHH
Q 001041 402 FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT-GSIKDNI 480 (1178)
Q Consensus 402 l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-~ti~~ni 480 (1178)
|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|++|+|.+|. .|++||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 579999999999999999999999999999999999999999999999876543 2489999998886 6999999
Q ss_pred hcCC----CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHH
Q 001041 481 AYGK----DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556 (1178)
Q Consensus 481 ~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~ 556 (1178)
.++. +..++++... .+.+.++.+ |++........+||||||||++||||++++|+++||||||++||+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~ 148 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRA-----IVEEHIALV--GLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDAL 148 (230)
T ss_pred HHHHHhcccCCCHHHHHH-----HHHHHHHHc--CCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHH
Confidence 8742 1222222111 112233333 4454555667789999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHH
Q 001041 557 SEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 557 ~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1178)
+.+.+.+.+.++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+..++
T Consensus 149 ~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 149 TRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 99999999988653 6899999999998765 999999999999998876655
No 335
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=3.8e-36 Score=327.99 Aligned_cols=196 Identities=26% Similarity=0.440 Sum_probs=158.7
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEc-CCCCCC-cccH
Q 001041 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVS-QEPVLF-TGSI 476 (1178)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~-Q~~~l~-~~ti 476 (1178)
+++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++... ....+++++|++ |++.++ ..|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 4699999999999999999999999999999999999999999999999886543 345677899997 566665 6799
Q ss_pred HHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCC
Q 001041 477 KDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD 554 (1178)
Q Consensus 477 ~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD 554 (1178)
+||+.+... ....++..+.. .+.++.+ |++.........||||||||++||||++.+|+++||||||++||
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 185 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRL-----DELSELL--DLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLD 185 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 999976422 12222222211 1222222 34333444556899999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEec
Q 001041 555 AESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 555 ~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1178)
+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 186 ~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 186 VVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999988753 6899999999998865 9999999999998764
No 336
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.3e-36 Score=292.86 Aligned_cols=210 Identities=29% Similarity=0.481 Sum_probs=169.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
+..++++.+|+..+ .++|+|+|++|.+||++++.||||||||||++++.|+++|..|+|.+||..+..-.. .=|
T Consensus 4 l~~~~~sl~y~g~~-~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga-----erg 77 (259)
T COG4525 4 LNVSHLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA-----ERG 77 (259)
T ss_pred eehhheEEecCCcc-hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc-----cce
Confidence 56788999998654 569999999999999999999999999999999999999999999999988765543 358
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCC
Q 001041 464 LVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1178)
Q Consensus 464 ~v~Q~~~l~~-~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~ 542 (1178)
.|+|++-|+. -++.||+.||..-.. +.++.+....++.+... |++..-......||||||||+.|||||..+|+
T Consensus 78 vVFQ~~~LlPWl~~~dNvafgL~l~G---i~k~~R~~~a~q~l~~V--gL~~~~~~~i~qLSGGmrQRvGiARALa~eP~ 152 (259)
T COG4525 78 VVFQNEALLPWLNVIDNVAFGLQLRG---IEKAQRREIAHQMLALV--GLEGAEHKYIWQLSGGMRQRVGIARALAVEPQ 152 (259)
T ss_pred eEeccCccchhhHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHh--CcccccccceEeecchHHHHHHHHHHhhcCcc
Confidence 9999998886 799999999854211 11111112222222221 44333345567899999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhh-ccCEEEEEe--CCEEEEecCh
Q 001041 543 ILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVR-NADMIAVIH--RGKIVEKGTH 604 (1178)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~-~~d~i~~l~--~G~i~~~g~~ 604 (1178)
.|+||||++|||+-|.+++|+.+.++. .++.+++|||+++..- .+++++||+ .|+|++.=++
T Consensus 153 ~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 153 LLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred eEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCC
Confidence 999999999999999999999987765 4789999999999865 599999997 5799876443
No 337
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.4e-36 Score=313.72 Aligned_cols=198 Identities=32% Similarity=0.512 Sum_probs=169.1
Q ss_pred cEEEEeEEEECCCCCC------CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHH
Q 001041 383 DIELRDVYFSYPARPN------EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ 456 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~------~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~ 456 (1178)
-++++|++..|+.... ..+++||||+|++||.++|||+|||||||+.++|+|+++|++|+|.++|.|+..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 3788999999975321 36899999999999999999999999999999999999999999999998876655
Q ss_pred HHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHH
Q 001041 457 WIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1178)
Q Consensus 457 ~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARa 536 (1178)
.....+++.+.++.+++.+. ......+.||||||||++||||
T Consensus 82 ----------------------------~~~~~~~v~elL~~Vgl~~~----------~~~ryPhelSGGQrQRi~IARA 123 (268)
T COG4608 82 ----------------------------KEERRERVLELLEKVGLPEE----------FLYRYPHELSGGQRQRIGIARA 123 (268)
T ss_pred ----------------------------hhHHHHHHHHHHHHhCCCHH----------HhhcCCcccCchhhhhHHHHHH
Confidence 11123456666665554332 3456668999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcCCCc
Q 001041 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEG 613 (1178)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~ 613 (1178)
|.-+|+++++|||+|+||.-.+.++.+.+.++. .+-|.++|||+++.+++ ||||.||..|+|+|.|+.+++..++..
T Consensus 124 Lal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~H 203 (268)
T COG4608 124 LALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLH 203 (268)
T ss_pred HhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCC
Confidence 999999999999999999999999999987765 36799999999999987 999999999999999999999999888
Q ss_pred hHHHHHH
Q 001041 614 AYSQLIR 620 (1178)
Q Consensus 614 ~~~~~~~ 620 (1178)
.|.+..-
T Consensus 204 pYTk~Ll 210 (268)
T COG4608 204 PYTKALL 210 (268)
T ss_pred HHHHHHH
Confidence 8887653
No 338
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.3e-35 Score=315.73 Aligned_cols=193 Identities=22% Similarity=0.374 Sum_probs=160.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
++++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. .....|++++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~ 77 (200)
T PRK13540 2 LDVIELDFDYHD---QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLC 77 (200)
T ss_pred EEEEEEEEEeCC---eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheE
Confidence 689999999963 469999999999999999999999999999999999999999999999998865 3456778999
Q ss_pred EEcCCCCCC-cccHHHHHhcCCCC-CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCC
Q 001041 464 LVSQEPVLF-TGSIKDNIAYGKDD-ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1178)
Q Consensus 464 ~v~Q~~~l~-~~ti~~ni~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~ 541 (1178)
|++|++.++ ..|++||+.++... ..+.++ .+.++.+ |+.........+||||||||++||||++++|
T Consensus 78 ~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~---------~~~l~~~--~l~~~~~~~~~~LS~G~~~rv~laral~~~p 146 (200)
T PRK13540 78 FVGHRSGINPYLTLRENCLYDIHFSPGAVGI---------TELCRLF--SLEHLIDYPCGLLSSGQKRQVALLRLWMSKA 146 (200)
T ss_pred EeccccccCcCCCHHHHHHHHHhcCcchHHH---------HHHHHHc--CCchhhhCChhhcCHHHHHHHHHHHHHhcCC
Confidence 999999886 58999999975311 111222 2333333 2222334445679999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhccCEEE
Q 001041 542 RILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIA 591 (1178)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~ 591 (1178)
++|||||||++||+.+...+.+.++++. +++|+|++||+.+.+..||.-.
T Consensus 147 ~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~ 197 (200)
T PRK13540 147 KLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEE 197 (200)
T ss_pred CEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhh
Confidence 9999999999999999999999998864 4789999999999999998644
No 339
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.5e-35 Score=316.24 Aligned_cols=195 Identities=22% Similarity=0.333 Sum_probs=163.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.... ...+++++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~ 77 (204)
T PRK13538 2 LEARNLACERDE---RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLL 77 (204)
T ss_pred eEEEEEEEEECC---EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheE
Confidence 688999999963 36999999999999999999999999999999999999999999999999987654 34567899
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 464 LVSQEPVLFT-GSIKDNIAYGKDD---ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 464 ~v~Q~~~l~~-~ti~~ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
|++|++.++. .|++||+.++.+. ..++++..+++..++. .........||||||||++||||+++
T Consensus 78 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS~G~~qrl~la~al~~ 146 (204)
T PRK13538 78 YLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLA-----------GFEDVPVRQLSAGQQRRVALARLWLT 146 (204)
T ss_pred EeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCH-----------HHhhCChhhcCHHHHHHHHHHHHHhc
Confidence 9999998875 6999999875432 1233444444444443 23344567899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEE
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVI 593 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l 593 (1178)
+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. .+|++++
T Consensus 147 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 147 RAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 999999999999999999999999998764 46899999999999965 4677776
No 340
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-36 Score=296.10 Aligned_cols=213 Identities=28% Similarity=0.485 Sum_probs=184.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
|+++||+.+|++ +.+++++|++|++|.+++++||+|+|||||+..+.|++++++|+|.+||.++.+.+.+.|.++++
T Consensus 2 I~i~nv~K~y~~---~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lS 78 (252)
T COG4604 2 ITIENVSKSYGT---KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLS 78 (252)
T ss_pred eeehhhhHhhCC---EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHH
Confidence 788999999963 57999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCC-cccHHHHHhcCCCCCCH--------HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHH
Q 001041 464 LVSQEPVLF-TGSIKDNIAYGKDDATT--------EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1178)
Q Consensus 464 ~v~Q~~~l~-~~ti~~ni~~~~~~~~~--------~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lA 534 (1178)
+..|+.++- .-||||=+.||+-.++. ..+.++++-.+ +...-++.-..||||||||.-+|
T Consensus 79 ILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~-----------L~~l~dryLd~LSGGQrQRAfIA 147 (252)
T COG4604 79 ILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLH-----------LEDLSDRYLDELSGGQRQRAFIA 147 (252)
T ss_pred HHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhc-----------ccchHHHhHHhcccchhhhhhhh
Confidence 999999876 67999999999744432 22223332222 23333344457999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
..++++.|.++||||+.+||.+....+.+.++++.. +||+++|-|+.++... +|+|+-|++|+++.+|+++|+++.
T Consensus 148 MVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~ 226 (252)
T COG4604 148 MVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226 (252)
T ss_pred eeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH
Confidence 999999999999999999999998888888877643 7999999999999875 899999999999999999999874
No 341
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=9.4e-33 Score=310.51 Aligned_cols=416 Identities=16% Similarity=0.219 Sum_probs=259.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 165 GRMSGDTVLIQDAMGEKVGKFLQLMATFLGG-FLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAA 243 (1178)
Q Consensus 165 ~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (1178)
.|++.|+++.-..+.+.....+...+.++.. +-+.-..+|+-...++..+.+-.++...+.+.+.+...++++...+..
T Consensus 186 QrltqDv~kf~~~l~sl~s~l~~a~~di~~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfR 265 (659)
T KOG0060|consen 186 QRLTQDVEKFCRQLSSLYSNLLKAPFDLVYYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFR 265 (659)
T ss_pred HHHhHHHHHHHHHHHHHHHhhhccceeeehhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchh
Confidence 5888999888777664444444433333222 222223334333333333333333344444444455545555555555
Q ss_pred HHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH-HHHHHHHHHH---HHHHHHHHHHhc
Q 001041 244 SVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQ---EGLAAGIGLGMV-MLIVFCSYAL---SVWYGGKLILEE 316 (1178)
Q Consensus 244 ~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~---~~~~g~~~~~~~ 316 (1178)
-.-.+...|...|..|+.++.+........+........ ..++.++..... .+..++.+++ .++.| + .-.
T Consensus 266 y~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~-h--~y~ 342 (659)
T KOG0060|consen 266 YKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSG-H--VYD 342 (659)
T ss_pred hheeeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeecc-c--ccC
Confidence 555566678888999998877665554443333322221 122222211111 1111111110 01111 0 112
Q ss_pred CCCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CC----------CCCcCC-------C
Q 001041 317 GYNGGQVVNVM----VAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINR---KP----------EIDAYD-------T 372 (1178)
Q Consensus 317 ~~~~~~~~~~~----~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~---~~----------~~~~~~-------~ 372 (1178)
.+++..+...+ .+++.+...++.+......+.+-..-..|+-|+.+. .. ++..+. .
T Consensus 343 ~~s~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~ 422 (659)
T KOG0060|consen 343 DLSPAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPP 422 (659)
T ss_pred CcCHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCC
Confidence 33444443322 112222223333322222233333334444433221 00 000000 0
Q ss_pred CCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCC
Q 001041 373 KGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE 452 (1178)
Q Consensus 373 ~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~ 452 (1178)
......+.+..|++++|++.-|++ +..+.+|+||+|+.|+.+.|+||||||||+|++.+.|+.+..+|++.-....-
T Consensus 423 G~~~~~~~Dn~i~~e~v~l~tPt~-g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~-- 499 (659)
T KOG0060|consen 423 GSGKAEPADNAIEFEEVSLSTPTN-GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGG-- 499 (659)
T ss_pred CCcccccccceEEeeeeeecCCCC-CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCC--
Confidence 001112234679999999998875 45677889999999999999999999999999999999999999997643210
Q ss_pred CCHHHHhcceEEEcCCCCCCcccHHHHHhcCC-------CCCCHHHHHHHHHHhcHHHHHHhCCCCccchh-cCCCCCCC
Q 001041 453 FQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGK-------DDATTEEIRVATELANAAKFIDKLPQGIDTLV-GEHGTQLS 524 (1178)
Q Consensus 453 ~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~-------~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~-~~~g~~lS 524 (1178)
-+.+-|+||.|.+-.||+||-+.++. ...+++++.+.++.+++...++. .+|+|+++ -+-...||
T Consensus 500 ------~~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r-~ggld~~~~~dW~dvLS 572 (659)
T KOG0060|consen 500 ------PKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLER-EGGLDQQVDWDWMDVLS 572 (659)
T ss_pred ------CCceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHH-hCCCCchhhccHHhhcC
Confidence 03599999999999999999999972 23678999999999999886655 46888665 45567899
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeC
Q 001041 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHR 595 (1178)
Q Consensus 525 gGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~ 595 (1178)
+||+||+|.||-+|.+|++-+|||+|||||.+.|..+.+.+++. +-|.|.|.||.+..+.=|.++-|+.
T Consensus 573 ~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~--giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 573 PGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM--GITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc--CCeEEEeccHHHHHhhhhEEEEecC
Confidence 99999999999999999999999999999999999999888775 7899999999999999999999976
No 342
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2.5e-35 Score=359.97 Aligned_cols=222 Identities=28% Similarity=0.491 Sum_probs=181.0
Q ss_pred cEEEEeEEEECCCC--------CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCC
Q 001041 383 DIELRDVYFSYPAR--------PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ 454 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~--------~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~ 454 (1178)
.|+++|+++.|+.. .+.++|+|+||+|++||+++|+||||||||||+++|+|+++ .+|+|.++|.++...+
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccc
Confidence 48999999999621 12469999999999999999999999999999999999984 8999999999987766
Q ss_pred HHH---HhcceEEEcCCC--CCCc-ccHHHHHhcCCCC----CCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCC
Q 001041 455 LQW---IRKKIGLVSQEP--VLFT-GSIKDNIAYGKDD----ATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQL 523 (1178)
Q Consensus 455 ~~~---~r~~i~~v~Q~~--~l~~-~ti~~ni~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~g~~-t~~~~~g~~l 523 (1178)
... +|.+++|++|+| .++. .|++||+.++... ....+.. ..+.+.++.+ |+. ........+|
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~L 426 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQRE-----QQVIAVMEEV--GLDPETRHRYPAEF 426 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHH-----HHHHHHHHHc--CCCHHHHhcCCccC
Confidence 443 467899999998 3554 6999999875210 1111111 1122334443 453 2356677899
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEE
Q 001041 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVE 600 (1178)
Q Consensus 524 SgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~ 600 (1178)
|||||||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 427 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 506 (529)
T PRK15134 427 SGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVE 506 (529)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999988753 6899999999998865 99999999999999
Q ss_pred ecChhHHhcCCC
Q 001041 601 KGTHSKLVEDPE 612 (1178)
Q Consensus 601 ~g~~~~l~~~~~ 612 (1178)
.|+++++...+.
T Consensus 507 ~~~~~~~~~~~~ 518 (529)
T PRK15134 507 QGDCERVFAAPQ 518 (529)
T ss_pred EcCHHHHhcCCC
Confidence 999999876543
No 343
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=8.7e-35 Score=312.56 Aligned_cols=196 Identities=20% Similarity=0.292 Sum_probs=162.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++++|++ +++++++||++++||+++|+|+||||||||+++|.|+++|++|+|.++|.++... ..++.+
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i 84 (214)
T PRK13543 11 LLAAHALAFSRNE---EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFM 84 (214)
T ss_pred eEEEeeEEEecCC---ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhce
Confidence 4899999999963 3599999999999999999999999999999999999999999999999988652 335679
Q ss_pred EEEcCCCCCCcc-cHHHHHhcCCCC--CC-HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhc
Q 001041 463 GLVSQEPVLFTG-SIKDNIAYGKDD--AT-TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1178)
Q Consensus 463 ~~v~Q~~~l~~~-ti~~ni~~~~~~--~~-~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~ 538 (1178)
+|++|++.++.. |++||+.++... .. ++.....++ .+ |+.........+||||||||++||||++
T Consensus 85 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~---------~~--~l~~~~~~~~~~LS~G~~qrv~laral~ 153 (214)
T PRK13543 85 AYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALA---------IV--GLAGYEDTLVRQLSAGQKKRLALARLWL 153 (214)
T ss_pred EEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHH---------Hc--CChhhccCChhhCCHHHHHHHHHHHHHh
Confidence 999999988875 999999764321 11 122222222 22 3333345556789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeC
Q 001041 539 KDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHR 595 (1178)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~ 595 (1178)
++|+++||||||++||+++.+.+.+.+++.. +++|+|++||+++.+.. ||++++++.
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 154 SPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 9999999999999999999999999998754 46899999999999865 899999864
No 344
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=5.1e-35 Score=310.73 Aligned_cols=193 Identities=23% Similarity=0.315 Sum_probs=158.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
++++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ...+++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (198)
T TIGR01189 1 LAARNLACSRGE---RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNIL 76 (198)
T ss_pred CEEEEEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheE
Confidence 468999999963 46999999999999999999999999999999999999999999999999987765 35577899
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCCCC--HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccC
Q 001041 464 LVSQEPVLFT-GSIKDNIAYGKDDAT--TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1178)
Q Consensus 464 ~v~Q~~~l~~-~ti~~ni~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~ 540 (1178)
|++|++.++. .|++||+.+..+... ++++.++++..++.+ .......+||||||||++||||++++
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~la~al~~~ 145 (198)
T TIGR01189 77 YLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTG-----------FEDLPAAQLSAGQQRRLALARLWLSR 145 (198)
T ss_pred EeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHH-----------HhcCChhhcCHHHHHHHHHHHHHhcC
Confidence 9999998875 799999986532211 223444555444433 23445568999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhccCEEEE
Q 001041 541 PRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAV 592 (1178)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~ 592 (1178)
|+++||||||++||+.+.+.+.+.++++. +++|+|++||+...+. +++++.
T Consensus 146 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~-~~~~~~ 197 (198)
T TIGR01189 146 APLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV-EARELR 197 (198)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccccc-ceEEee
Confidence 99999999999999999999999998763 5789999999985443 366554
No 345
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=1.8e-35 Score=365.17 Aligned_cols=203 Identities=24% Similarity=0.385 Sum_probs=171.9
Q ss_pred CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC---CCcEEECCeecCCCCHHHHhcceEEEcCCCCCCc-
Q 001041 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ---AGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT- 473 (1178)
Q Consensus 398 ~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~---~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~- 473 (1178)
++++|+|+|+++++||+++|+||||||||||+++|.|..+|. +|+|.+||.++. ...+|+.++||+|+++++.
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~---~~~~~~~i~yv~Q~~~~~~~ 113 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID---AKEMRAISAYVQQDDLFIPT 113 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC---HHHHhhhceeeccccccCcc
Confidence 467999999999999999999999999999999999998874 799999999875 3567889999999999984
Q ss_pred ccHHHHHhcCCCC-----CCHHHHHHHHHHhcHHHHHHh--CCCCccchhcCC--CCCCChHHHHHHHHHHHhccCCCEE
Q 001041 474 GSIKDNIAYGKDD-----ATTEEIRVATELANAAKFIDK--LPQGIDTLVGEH--GTQLSGGQKQRIAIARAILKDPRIL 544 (1178)
Q Consensus 474 ~ti~~ni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~--~~~g~~t~~~~~--g~~lSgGqkqri~lARal~~~~~il 544 (1178)
.||+|||.|+... .+.++. ...+++.++. +++..||.+|+. +..||||||||++|||||+.+|+++
T Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~-----~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vl 188 (617)
T TIGR00955 114 LTVREHLMFQAHLRMPRRVTKKEK-----RERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLL 188 (617)
T ss_pred CcHHHHHHHHHhcCCCCCCCHHHH-----HHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEE
Confidence 6999999985321 122211 1122333444 445678999984 4789999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcc-h-hhccCEEEEEeCCEEEEecChhHHh
Q 001041 545 LLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLS-T-VRNADMIAVIHRGKIVEKGTHSKLV 608 (1178)
Q Consensus 545 llDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~-~-~~~~d~i~~l~~G~i~~~g~~~~l~ 608 (1178)
+||||||+||+.+...+.+.++++. +++|+|+++|+++ . ...+|++++|++|++++.|+++++.
T Consensus 189 llDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~ 255 (617)
T TIGR00955 189 FCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAV 255 (617)
T ss_pred EeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHH
Confidence 9999999999999999999998875 4799999999996 3 5679999999999999999999885
No 346
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=9.2e-35 Score=320.31 Aligned_cols=208 Identities=24% Similarity=0.345 Sum_probs=169.3
Q ss_pred cEEEEeEEEECCCC-----------------CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEE
Q 001041 383 DIELRDVYFSYPAR-----------------PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 445 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~-----------------~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i 445 (1178)
.|+++|++..|... ...++|+|+||+|++||+++|+||||||||||+++|+|+++|.+|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 46777777666431 1246899999999999999999999999999999999999999999999
Q ss_pred CCeecCCCCHHHHhcceEEEcCCCCCC-cccHHHHHhcCC--CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCC
Q 001041 446 DGINLKEFQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYGK--DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522 (1178)
Q Consensus 446 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~ni~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~ 522 (1178)
+| .+++++|++.++ ..|+++|+.++. ...+.++...... +.+..+ |++..+.....+
T Consensus 84 ~g-------------~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~-----~~l~~~--~l~~~~~~~~~~ 143 (264)
T PRK13546 84 NG-------------EVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTP-----KIIEFS--ELGEFIYQPVKK 143 (264)
T ss_pred CC-------------EEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHH-----HHHHHc--CCchhhcCCccc
Confidence 98 367888998776 469999997632 1223333322111 111111 445556667789
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEE
Q 001041 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVE 600 (1178)
Q Consensus 523 lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~ 600 (1178)
||||||||++||||++++|++|||||||++||+.+.+.+.+.+.++. .++|+|++||+++.+.. ||+|++|++|++++
T Consensus 144 LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~ 223 (264)
T PRK13546 144 YSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKD 223 (264)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999887764 47899999999999865 99999999999999
Q ss_pred ecChhHHhcC
Q 001041 601 KGTHSKLVED 610 (1178)
Q Consensus 601 ~g~~~~l~~~ 610 (1178)
.|+++++.+.
T Consensus 224 ~g~~~~~~~~ 233 (264)
T PRK13546 224 YGELDDVLPK 233 (264)
T ss_pred eCCHHHHHHH
Confidence 9999998875
No 347
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.6e-35 Score=276.10 Aligned_cols=219 Identities=28% Similarity=0.466 Sum_probs=176.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCe--ecCCCC----HH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGI--NLKEFQ----LQ 456 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~--~~~~~~----~~ 456 (1178)
.|++++++|.|+. ..+|.||+|+.+.||.+.+.||||+|||||++.|.=+--|.+|+..|.|. |.+..+ ..
T Consensus 2 sirv~~in~~yg~---~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~ 78 (242)
T COG4161 2 SIQLNGINCFYGA---HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred ceEEccccccccc---chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHH
Confidence 4889999999974 35999999999999999999999999999999998888899999999764 444333 35
Q ss_pred HHhcceEEEcCCCCCC-cccHHHHHhcCCCC----CCH-HH---HHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH
Q 001041 457 WIRKKIGLVSQEPVLF-TGSIKDNIAYGKDD----ATT-EE---IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1178)
Q Consensus 457 ~~r~~i~~v~Q~~~l~-~~ti~~ni~~~~~~----~~~-~~---~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGq 527 (1178)
++|+.+|+|+|.-++. ..||.||+.- .|. .++ +. ..+.++..++.++-. +-.-.|||||
T Consensus 79 ~lr~~vgmvfqqy~lwphltv~enlie-ap~kv~gl~~~qa~~~a~ellkrlrl~~~ad-----------r~plhlsggq 146 (242)
T COG4161 79 DLRRNVGMVFQQYNLWPHLTVQENLIE-APCRVLGLSKDQALARAEKLLKRLRLKPYAD-----------RYPLHLSGGQ 146 (242)
T ss_pred HHHHhhhhhhhhhccCchhHHHHHHHh-hhHHHhCCCHHHHHHHHHHHHHHhccccccc-----------cCceecccch
Confidence 7899999999999888 5799999973 231 112 21 222333333333333 3346799999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc-CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChh
Q 001041 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHS 605 (1178)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 605 (1178)
+||++|||||+.+|++|++||||+||||+-..++.+.|+++.. |-|-++|||..+..+. |.+|+.|++|+|+|.|+++
T Consensus 147 qqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~ 226 (242)
T COG4161 147 QQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226 (242)
T ss_pred hhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchh
Confidence 9999999999999999999999999999998899999998764 6799999999999876 9999999999999999988
Q ss_pred HHhcCCCchHH
Q 001041 606 KLVEDPEGAYS 616 (1178)
Q Consensus 606 ~l~~~~~~~~~ 616 (1178)
..-+...+.|.
T Consensus 227 ~ft~p~te~f~ 237 (242)
T COG4161 227 CFTEPQTEAFK 237 (242)
T ss_pred hccCccHHHHH
Confidence 76544333333
No 348
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1e-34 Score=310.36 Aligned_cols=195 Identities=24% Similarity=0.351 Sum_probs=162.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|+++.|+. ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. .. .|.++
T Consensus 2 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~-~~~~~ 75 (207)
T PRK13539 2 MLEGEDLACVRGG---RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--PD-VAEAC 75 (207)
T ss_pred EEEEEeEEEEECC---eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--hh-hHhhc
Confidence 3789999999963 359999999999999999999999999999999999999999999999998652 22 77889
Q ss_pred EEEcCCCCCC-cccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 463 GLVSQEPVLF-TGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 463 ~~v~Q~~~l~-~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
+|++|++.++ ..|++||+.+... ...++++.++++..++.+ .......+||||||||++||||+++
T Consensus 76 ~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~la~al~~ 144 (207)
T PRK13539 76 HYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAP-----------LAHLPFGYLSAGQKRRVALARLLVS 144 (207)
T ss_pred EEecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHH-----------HHcCChhhcCHHHHHHHHHHHHHhc
Confidence 9999988765 6899999976432 122344445555444433 2233446899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhccCEEEEEeC
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVIHR 595 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~ 595 (1178)
+|+++||||||++||+.+.+.+.+.+++.. +++|+|++||+++.+.. |+++.++.
T Consensus 145 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 145 NRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 999999999999999999999999998753 57899999999999988 99988854
No 349
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-34 Score=333.61 Aligned_cols=208 Identities=25% Similarity=0.352 Sum_probs=167.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++|+|+....+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------ 88 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence 58899999999764445799999999999999999999999999999999999999999999999641
Q ss_pred EEEcCCCCCC-cccHHHHHhcCC--CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 463 GLVSQEPVLF-TGSIKDNIAYGK--DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 463 ~~v~Q~~~l~-~~ti~~ni~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
++.+.+.++ ..|++||+.++. ...+.++..+.+ .+.++.+ |++.........||||||||++||||++.
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i-----~elLe~l--gL~~~ld~~~~~LSGGQrQRVaLArAL~~ 160 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEII-----PEIIEFA--DIGKFIYQPVKTYSSGMKSRLGFAISVHI 160 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHH-----HHHHHHc--CChhHhhCCcccCCHHHHHHHHHHHHHHh
Confidence 233344444 369999998642 122333322211 1122222 34444556678899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 161 ~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~ 233 (549)
T PRK13545 161 NPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDH 233 (549)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence 999999999999999999999999998764 47899999999999865 999999999999999999998764
No 350
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1e-34 Score=357.44 Aligned_cols=202 Identities=28% Similarity=0.450 Sum_probs=168.1
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC--CCcEEECCeecCCCCHHHHhcceEEEcCCCCCCc-cc
Q 001041 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ--AGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT-GS 475 (1178)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~--~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-~t 475 (1178)
+.+|+|+|+++++||+++|+||||||||||+++|.|..+|. +|+|.+||.++.. ..+++++||+|++.++. .|
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~----~~~~~i~yv~Q~~~l~~~lT 156 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK----QILKRTGFVTQDDILYPHLT 156 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch----hhccceEEECcccccCCcCC
Confidence 56999999999999999999999999999999999999885 8999999998742 34567999999999885 69
Q ss_pred HHHHHhcCC----C-CCCHHHHHHHHHHhcHHHHHHh--CCCCccchhcCC-CCCCChHHHHHHHHHHHhccCCCEEEEe
Q 001041 476 IKDNIAYGK----D-DATTEEIRVATELANAAKFIDK--LPQGIDTLVGEH-GTQLSGGQKQRIAIARAILKDPRILLLD 547 (1178)
Q Consensus 476 i~~ni~~~~----~-~~~~~~~~~~~~~~~~~~~i~~--~~~g~~t~~~~~-g~~lSgGqkqri~lARal~~~~~illlD 547 (1178)
|+||+.|.. + ..++++..+. +++.++. +++..+|.+|+. ...||||||||++|||||+++|+||+||
T Consensus 157 V~E~l~~~a~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLD 231 (659)
T PLN03211 157 VRETLVFCSLLRLPKSLTKQEKILV-----AESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 231 (659)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHH-----HHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEe
Confidence 999998752 2 1233322211 1223333 333447888754 6789999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcch-h-hccCEEEEEeCCEEEEecChhHHhc
Q 001041 548 EATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLST-V-RNADMIAVIHRGKIVEKGTHSKLVE 609 (1178)
Q Consensus 548 e~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1178)
|||++||+.+...+.+.++++. +++|+|+++|+++. + ..+|+|++|++|++++.|+++++.+
T Consensus 232 EPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 232 EPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 9999999999999999998875 58999999999984 4 5699999999999999999998853
No 351
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=1.2e-34 Score=314.46 Aligned_cols=203 Identities=29% Similarity=0.395 Sum_probs=160.3
Q ss_pred EEEEeEEEECCCC---C-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEEC--Ce--ecCCCCH
Q 001041 384 IELRDVYFSYPAR---P-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID--GI--NLKEFQL 455 (1178)
Q Consensus 384 i~~~~~~~~y~~~---~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~--g~--~~~~~~~ 455 (1178)
|+++|++++|+.. . ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++ |. ++...+.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 6899999999631 1 2469999999999999999999999999999999999999999999998 42 6655554
Q ss_pred HH---H-hcceEEEcCCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccch-hcCCCCCCChHH
Q 001041 456 QW---I-RKKIGLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTL-VGEHGTQLSGGQ 527 (1178)
Q Consensus 456 ~~---~-r~~i~~v~Q~~~l~~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~-~~~~g~~lSgGq 527 (1178)
.. + +++++|++|+|.++. .|++||+.++.. ....++..+ .+.+.++.+ |++.. ....+.+|||||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LS~G~ 154 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARA-----RARELLARL--NIPERLWHLPPATFSGGE 154 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhhhCCcccCCHHH
Confidence 43 3 457999999998775 699999976321 112111111 112233333 33322 244677899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhh-ccCEEEEE
Q 001041 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVI 593 (1178)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l 593 (1178)
|||++||||++++|+++||||||++||+++.+.+.+.++++. +++|+|++||+++.+. .||+|+.+
T Consensus 155 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 155 QQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999999999999999999999999999998865 4789999999999886 59999876
No 352
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-34 Score=352.26 Aligned_cols=218 Identities=23% Similarity=0.383 Sum_probs=177.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-CCCCcEEECCeecCCCCH-HHHhc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-PQAGEVLIDGINLKEFQL-QWIRK 460 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-~~~G~i~i~g~~~~~~~~-~~~r~ 460 (1178)
.|+++|+++.|+...+.++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++...+. +..+.
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 4899999999953223469999999999999999999999999999999999998 599999999998865543 34567
Q ss_pred ceEEEcCCC---CCC-cccHHHHHhcCCC-CC------CHHHHHHHHHHhcHHHHHHhCCCCccc-hhcCCCCCCChHHH
Q 001041 461 KIGLVSQEP---VLF-TGSIKDNIAYGKD-DA------TTEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSGGQK 528 (1178)
Q Consensus 461 ~i~~v~Q~~---~l~-~~ti~~ni~~~~~-~~------~~~~~~~~~~~~~~~~~i~~~~~g~~t-~~~~~g~~lSgGqk 528 (1178)
+++|++|+| .++ ..|+.||+.++.. .. +.++ ....+.+.++.+ |++. ........||||||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~k 411 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAA-----ELKTILESIQRL--KVKTASPELAIARLSGGNQ 411 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHH-----HHHHHHHHHHhc--CccCCCcccccccCCHHHH
Confidence 899999996 355 5699999987531 00 1111 111233445554 4432 34566778999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhH
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 606 (1178)
||++||||++.+|++|||||||++||+.+.+.+.+.++++. +++|+|+|||+++.+.. ||++++|++|+++..|++++
T Consensus 412 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 491 (506)
T PRK13549 412 QKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHN 491 (506)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEecccc
Confidence 99999999999999999999999999999999999998764 47899999999998865 99999999999999998876
Q ss_pred H
Q 001041 607 L 607 (1178)
Q Consensus 607 l 607 (1178)
+
T Consensus 492 ~ 492 (506)
T PRK13549 492 L 492 (506)
T ss_pred C
Confidence 5
No 353
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.4e-34 Score=352.96 Aligned_cols=220 Identities=28% Similarity=0.470 Sum_probs=176.2
Q ss_pred cEEEEeEEEECCC--CCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEEC-Cee---cCCCC--
Q 001041 383 DIELRDVYFSYPA--RPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID-GIN---LKEFQ-- 454 (1178)
Q Consensus 383 ~i~~~~~~~~y~~--~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~-g~~---~~~~~-- 454 (1178)
.++++|++++|++ +...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |.+ +...+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 5999999999963 122469999999999999999999999999999999999999999999996 643 33332
Q ss_pred -HHHHhcceEEEcCCCCCCc-ccHHHHHhcCCC-CCCHHHHHHHHHHhcHHHHHHhCCCCccc-----hhcCCCCCCChH
Q 001041 455 -LQWIRKKIGLVSQEPVLFT-GSIKDNIAYGKD-DATTEEIRVATELANAAKFIDKLPQGIDT-----LVGEHGTQLSGG 526 (1178)
Q Consensus 455 -~~~~r~~i~~v~Q~~~l~~-~ti~~ni~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~g~~t-----~~~~~g~~lSgG 526 (1178)
...+|++++|+||++.+|. .|++||+.++.. ....++.. ..+.+.++.+ |+.. .......+||||
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~~~~~LSgG 431 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELAR-----MKAVITLKMV--GFDEEKAEEILDKYPDELSEG 431 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHH-----HHHHHHHHhC--CCCCccchhhhhCChhhCCHH
Confidence 2345678999999998775 699999986321 11111111 1122333333 3322 345667789999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecC
Q 001041 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603 (1178)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 603 (1178)
||||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 432 q~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~ 511 (520)
T TIGR03269 432 ERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGD 511 (520)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999988753 6899999999999865 99999999999999999
Q ss_pred hhHHhc
Q 001041 604 HSKLVE 609 (1178)
Q Consensus 604 ~~~l~~ 609 (1178)
++++.+
T Consensus 512 ~~~~~~ 517 (520)
T TIGR03269 512 PEEIVE 517 (520)
T ss_pred HHHHHh
Confidence 888754
No 354
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.1e-35 Score=299.97 Aligned_cols=197 Identities=29% Similarity=0.491 Sum_probs=169.2
Q ss_pred ceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCC----CCHHHHhcceEEEcCCCCCC-cccHHH
Q 001041 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE----FQLQWIRKKIGLVSQEPVLF-TGSIKD 478 (1178)
Q Consensus 404 ~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~----~~~~~~r~~i~~v~Q~~~l~-~~ti~~ 478 (1178)
+++|..+.-.++||-|+||||||||+++|.|+..|++|.|.+||.-+.+ +.+.--+++||||+||.-|| .-|||-
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 5788887768999999999999999999999999999999999986643 33334467899999999999 589999
Q ss_pred HHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhH
Q 001041 479 NIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558 (1178)
Q Consensus 479 ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~ 558 (1178)
|+.||....+.++...++++-++... +.....+||||+|||+||+|||+.+|++|++|||+|+||-...
T Consensus 96 NL~YG~~~~~~~~fd~iv~lLGI~hL-----------L~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK 164 (352)
T COG4148 96 NLRYGMWKSMRAQFDQLVALLGIEHL-----------LDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRK 164 (352)
T ss_pred chhhhhcccchHhHHHHHHHhCcHHH-----------HhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchh
Confidence 99999876666667666666555444 4455578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcCC
Q 001041 559 KVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDP 611 (1178)
Q Consensus 559 ~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 611 (1178)
+.+.-.++.+.+ +--++.|||.++.+.+ ||+|++|++|++...|..++..+.+
T Consensus 165 ~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~ 220 (352)
T COG4148 165 REILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220 (352)
T ss_pred hHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence 988888877764 3578999999998755 9999999999999999999998763
No 355
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=1e-34 Score=306.43 Aligned_cols=178 Identities=33% Similarity=0.528 Sum_probs=144.1
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCC--CCHHHHhcceEEEcCCC--CCCcc
Q 001041 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE--FQLQWIRKKIGLVSQEP--VLFTG 474 (1178)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~--~~~~~~r~~i~~v~Q~~--~l~~~ 474 (1178)
+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...+++.++|++|+| .+|..
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 469999999999999999999999999999999999999999999999998852 23445678899999998 47788
Q ss_pred cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCC
Q 001041 475 SIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 552 (1178)
Q Consensus 475 ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~ 552 (1178)
|++||+.++.. ..+.++..+. +.+.++.+ |++........+||||||||++||||++++|+++||||||++
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~ 157 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERR-----VREALTAV--GASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAG 157 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 99999987521 1222222111 11222222 344444556678999999999999999999999999999999
Q ss_pred CCHHhHHHHHHHHHHHh-cCCeEEEEecCcch
Q 001041 553 LDAESEKVVQEALDRIM-VNRTTVIVAHRLST 583 (1178)
Q Consensus 553 lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~ 583 (1178)
||+.+.+.+.+.++++. +++|+|++||+++.
T Consensus 158 LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 158 LDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 99999999999998774 47899999999875
No 356
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=1.7e-34 Score=312.12 Aligned_cols=187 Identities=27% Similarity=0.469 Sum_probs=154.9
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCC---CcccHHHHHhcC
Q 001041 407 ISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVL---FTGSIKDNIAYG 483 (1178)
Q Consensus 407 l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l---~~~ti~~ni~~~ 483 (1178)
|++++||+++|+|+||||||||+++|.|+++|++|+|.+||.++. ..+++++|++|+|.+ ++.|+++|+.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999998753 346789999999965 457999999875
Q ss_pred CCC-------CC---HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCC
Q 001041 484 KDD-------AT---TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 553 (1178)
Q Consensus 484 ~~~-------~~---~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~l 553 (1178)
... .. ++++..+++.. |++........+||||||||++||||++++|+++||||||++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~L 144 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRV-----------GLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGL 144 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHh-----------CCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 210 11 12233333333 3333344556679999999999999999999999999999999
Q ss_pred CHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 554 DAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 554 D~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
|+.+.+.+.+.++++. +++|+|++||+++.+.. ||+|+++ +|++++.|+++++..+
T Consensus 145 D~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~ 202 (223)
T TIGR03771 145 DMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDP 202 (223)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcCh
Confidence 9999999999998875 47899999999998864 9999999 7999999999988653
No 357
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=1.6e-34 Score=312.37 Aligned_cols=197 Identities=24% Similarity=0.325 Sum_probs=154.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
+.++|++..|+. +++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++...
T Consensus 23 l~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~---------- 89 (224)
T cd03220 23 LGILGRKGEVGE---FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL---------- 89 (224)
T ss_pred hhhhhhhhhcCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh----------
Confidence 567788888853 4699999999999999999999999999999999999999999999999875311
Q ss_pred EEcCCCCC-CcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccC
Q 001041 464 LVSQEPVL-FTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1178)
Q Consensus 464 ~v~Q~~~l-~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~ 540 (1178)
.+.+.+ .+.|++||+.++... .+.++..+. ..+.++.+ |++........+||||||||++||||++++
T Consensus 90 --~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~laral~~~ 160 (224)
T cd03220 90 --GLGGGFNPELTGRENIYLNGRLLGLSRKEIDEK-----IDEIIEFS--ELGDFIDLPVKTYSSGMKARLAFAIATALE 160 (224)
T ss_pred --cccccCCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 111222 357999999865321 122222111 11122221 344444555578999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhh-ccCEEEEEeCCEEEEec
Q 001041 541 PRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g 602 (1178)
|+++||||||++||+.+.+.+.+.+++.. +++|+|++||+++.+. .||++++|++|++++.|
T Consensus 161 p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 161 PDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999998764 3589999999999886 49999999999998765
No 358
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.4e-34 Score=304.63 Aligned_cols=189 Identities=20% Similarity=0.359 Sum_probs=156.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
++++|++++|+. +.++ ++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.... ++.++
T Consensus 2 l~~~~l~~~~~~---~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~ 73 (195)
T PRK13541 2 LSLHQLQFNIEQ---KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCT 73 (195)
T ss_pred eEEEEeeEEECC---cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEE
Confidence 689999999953 3355 599999999999999999999999999999999999999999999876542 34699
Q ss_pred EEcCCCCC-CcccHHHHHhcCCCCC-CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCC
Q 001041 464 LVSQEPVL-FTGSIKDNIAYGKDDA-TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1178)
Q Consensus 464 ~v~Q~~~l-~~~ti~~ni~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~ 541 (1178)
|++|++.+ +..|++||+.++.... ..++++.+++..++ +....+.+.+||||||||++||||++++|
T Consensus 74 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~~rl~la~al~~~p 142 (195)
T PRK13541 74 YIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKL-----------HDLLDEKCYSLSSGMQKIVAIARLIACQS 142 (195)
T ss_pred eccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCC-----------HhhhccChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999854 6789999998754322 23344444444443 33345567889999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHH-hcCCeEEEEecCcchhhccCEEE
Q 001041 542 RILLLDEATSALDAESEKVVQEALDRI-MVNRTTVIVAHRLSTVRNADMIA 591 (1178)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~i~~~-~~~~t~i~itH~~~~~~~~d~i~ 591 (1178)
+++||||||++||+.+.+.+.+.++.. .+++|+|++||+++.++.+|.|.
T Consensus 143 ~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 143 DLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhheec
Confidence 999999999999999999999998754 35789999999999999999763
No 359
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=3.4e-34 Score=355.36 Aligned_cols=219 Identities=30% Similarity=0.483 Sum_probs=187.1
Q ss_pred cEEEEeEEEECCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHH---
Q 001041 383 DIELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI--- 458 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~--- 458 (1178)
.++++|++++|+... .+++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+.+.+
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 489999999996422 2469999999999999999999999999999999999999999999999999998886653
Q ss_pred -hcceEEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHH
Q 001041 459 -RKKIGLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1178)
Q Consensus 459 -r~~i~~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lA 534 (1178)
|+.++|++|+|.+|. .|+.||+.++... ...++. .....+.++.+ |++..+.....+||||||||++||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~-----~~~~~~~l~~l--gl~~~~~~~~~~LS~Gq~qrv~LA 156 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQR-----LLRAQELLQRL--GLEDRVEYQPSQLSGGQQQRVSIA 156 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHC--CChhhhcCCcccCCHHHHHHHHHH
Confidence 578999999999985 6999999864211 111111 11223445554 667777777889999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHh
Q 001041 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLV 608 (1178)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 608 (1178)
||++++|+++||||||++||+.+.+.+.+.++++. +++|+|++||+++.+..||++++|++|++++.|+.++..
T Consensus 157 raL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 157 RALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 99999999999999999999999999999998875 478999999999999889999999999999999999875
No 360
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.2e-32 Score=362.21 Aligned_cols=220 Identities=19% Similarity=0.345 Sum_probs=183.9
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcc
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1178)
..|+++|++++|+++ .+++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.. +....|++
T Consensus 1936 ~~L~v~nLsK~Y~~~-~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~ 2013 (2272)
T TIGR01257 1936 DILRLNELTKVYSGT-SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQN 2013 (2272)
T ss_pred ceEEEEEEEEEECCC-CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhh
Confidence 359999999999642 2569999999999999999999999999999999999999999999999999865 45567888
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhc
Q 001041 462 IGLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1178)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~ 538 (1178)
||||||++.++. .|++||+.+... ....++..+. ..+.++.+ |++.........||||||||++||||++
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~-----v~~lLe~l--gL~~~~dk~~~~LSGGqKqRLslA~ALi 2086 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKV-----ANWSIQSL--GLSLYADRLAGTYSGGNKRKLSTAIALI 2086 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc--CCHHHhcCChhhCCHHHHHHHHHHHHHh
Confidence 999999998874 699999986311 1122222211 11223333 4554556667789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 539 KDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
.+|+|++|||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||||++|++|++++.|+++++.+.
T Consensus 2087 ~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2087 GCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 9999999999999999999999999998864 57899999999999875 999999999999999999998654
No 361
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=6.6e-34 Score=345.67 Aligned_cols=216 Identities=23% Similarity=0.332 Sum_probs=173.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-CCCcEEECCeecCCCCH-HHHhc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-QAGEVLIDGINLKEFQL-QWIRK 460 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-~~G~i~i~g~~~~~~~~-~~~r~ 460 (1178)
.++++|++++|+...+..+|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+. ..+|+
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 48999999998432124699999999999999999999999999999999999985 89999999999865443 45678
Q ss_pred ceEEEcCCC---CCC-cccHHHHHhcCCCC-C------CHHHHHHHHHHhcHHHHHHhCCCCccc-hhcCCCCCCChHHH
Q 001041 461 KIGLVSQEP---VLF-TGSIKDNIAYGKDD-A------TTEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSGGQK 528 (1178)
Q Consensus 461 ~i~~v~Q~~---~l~-~~ti~~ni~~~~~~-~------~~~~~~~~~~~~~~~~~i~~~~~g~~t-~~~~~g~~lSgGqk 528 (1178)
+++|++|++ .++ ..|+++|+.++... . ..++ ....+.+.++.+ |+.. ........||||||
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqk 409 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAA-----ELQIIGSAIQRL--KVKTASPFLPIGRLSGGNQ 409 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHH-----HHHHHHHHHHhc--CccCCCccCccccCCHHHH
Confidence 899999996 355 46999999875310 0 1111 111223344444 3432 24555678999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChh
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHS 605 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 605 (1178)
||++||||++.+|++|||||||++||+.+...+.+.++++. ++.|+|+|||+++.+.. ||++++|++|+++..++.+
T Consensus 410 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~ 488 (500)
T TIGR02633 410 QKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNH 488 (500)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccc
Confidence 99999999999999999999999999999999999888764 47899999999999865 9999999999999766543
No 362
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.8e-31 Score=281.59 Aligned_cols=375 Identities=21% Similarity=0.232 Sum_probs=286.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001041 767 YLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQ 846 (1178)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~ 846 (1178)
++++.++..+.+.+........++++..++|.++.++++..|+.-++ +..+++++.++++|+..|. +-...++.+.+
T Consensus 54 f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerie--r~~~~rlla~L~~Dvr~IS-f~~s~lp~~~q 130 (546)
T COG4615 54 FLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIE--RLGSARLLAGLTSDVRNIS-FAFSRLPELVQ 130 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH--Hhcccchhhhhccccccee-ehHhhhHHHHH
Confidence 34444444555666777888899999999999999999999999999 5889999999999999998 55566788999
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHH--
Q 001041 847 NISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKV-- 924 (1178)
Q Consensus 847 ~~~~~i~~ii~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~-- 924 (1178)
+...+++++.++++.|+++.+++++++.+.++..++.+.+..+..+..++...++.+..+..++|-+..+....-.+.
T Consensus 131 a~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h 210 (546)
T COG4615 131 AIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVH 210 (546)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHH
Confidence 999999999999999999999999999999999999999888889999999999999999999999998876432221
Q ss_pred HHHHHHHhhhHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchh
Q 001041 925 MQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSS 1004 (1178)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~ 1004 (1178)
.+.|....+...+...+..........+.+++....+.+++|+.... +.-+.....++.+.+.++-.|+.+.....+
T Consensus 211 ~~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~---~w~st~~a~tivlvlLflr~pL~s~vgilP 287 (546)
T COG4615 211 NNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSL---GWASTNVAATIVLVLLFLRTPLLSAVGILP 287 (546)
T ss_pred hhhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccchhhHHHHHHHHHHHHhhHHHHHHhhhh
Confidence 12222222222221111111111223334444444555555554333 233334445566666778889999999999
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCH
Q 001041 1005 DSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGK 1084 (1178)
Q Consensus 1005 ~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGK 1084 (1178)
.+..+.++.+++.++-..|+..+-. .+...+..+ .||++||.|+|++.. --+..||++|+.||.|=|+|.+||||
T Consensus 288 ~l~~AqvA~~kiakle~~~~~a~~~--~~q~~p~~~-~lelrnvrfay~~~~--FhvgPiNl~ikrGelvFliG~NGsGK 362 (546)
T COG4615 288 TLLTAQVAFNKIAKLELAPYKADFP--RPQAFPDWK-TLELRNVRFAYQDNA--FHVGPINLTIKRGELVFLIGGNGSGK 362 (546)
T ss_pred HHHHHHHHHHHHHHhhcCCccccCC--CCCcCCccc-ceeeeeeeeccCccc--ceecceeeEEecCcEEEEECCCCCcH
Confidence 9999999999999886544322111 111122233 599999999997432 45889999999999999999999999
Q ss_pred HHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHH
Q 001041 1085 STVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEM 1158 (1178)
Q Consensus 1085 STL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~ 1158 (1178)
||+++||.|+|.|++|+|++||.+++.=++++.|+-+|-|+-|-+||+.++ |+...++.+.|..-++.
T Consensus 363 ST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~~Lqr 430 (546)
T COG4615 363 STLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQR 430 (546)
T ss_pred HHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999764 54433777766554443
No 363
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=8.1e-34 Score=322.91 Aligned_cols=190 Identities=33% Similarity=0.558 Sum_probs=156.8
Q ss_pred EEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHH
Q 001041 417 LVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIR 493 (1178)
Q Consensus 417 ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~ 493 (1178)
|+||||||||||+++|+|+++|++|+|.++|.++...+. .+++++|++|++.+|. .|++||+.|+... .+.++..
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 689999999999999999999999999999999977664 3568999999999986 5999999986421 1222211
Q ss_pred HHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--C
Q 001041 494 VATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--N 571 (1178)
Q Consensus 494 ~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~ 571 (1178)
. .+.+.++.+ |++........+||||||||++|||||+++|+++||||||++||+.+...+.+.++++.+ +
T Consensus 79 ~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g 151 (325)
T TIGR01187 79 P-----RVLEALRLV--QLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLG 151 (325)
T ss_pred H-----HHHHHHHHc--CCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcC
Confidence 1 112233333 455556666788999999999999999999999999999999999999999999988753 7
Q ss_pred CeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcCCCchH
Q 001041 572 RTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615 (1178)
Q Consensus 572 ~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 615 (1178)
+|+|+|||+++.+.. ||+|++|++|++++.|+++++...+...+
T Consensus 152 ~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~~~~ 196 (325)
T TIGR01187 152 ITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPANLF 196 (325)
T ss_pred CEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCcHH
Confidence 899999999998764 99999999999999999999987654433
No 364
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-33 Score=343.82 Aligned_cols=210 Identities=20% Similarity=0.332 Sum_probs=172.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCH-HHHhcc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRKK 461 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~-~~~r~~ 461 (1178)
.++++|+++.|. .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|++
T Consensus 265 ~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 339 (510)
T PRK09700 265 VFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339 (510)
T ss_pred EEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCC
Confidence 599999998762 38999999999999999999999999999999999999999999999998866543 456778
Q ss_pred eEEEcCCC---CCCc-ccHHHHHhcCCCCC-----------CHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCCh
Q 001041 462 IGLVSQEP---VLFT-GSIKDNIAYGKDDA-----------TTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSG 525 (1178)
Q Consensus 462 i~~v~Q~~---~l~~-~ti~~ni~~~~~~~-----------~~~~~~~~~~~~~~~~~i~~~~~g~~-t~~~~~g~~lSg 525 (1178)
++|+||++ .++. .|++||+.++.... ...+. ...+.+.++.+ |+. .........|||
T Consensus 340 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSg 412 (510)
T PRK09700 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDE-----QRTAENQRELL--ALKCHSVNQNITELSG 412 (510)
T ss_pred cEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHH-----HHHHHHHHHhc--CCCCCCccCccccCCh
Confidence 99999984 4664 69999998753210 11111 11223444444 453 345666678999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecC
Q 001041 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGT 603 (1178)
Q Consensus 526 Gqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~ 603 (1178)
|||||++||||++.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+. .||+|++|++|++++.++
T Consensus 413 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~ 492 (510)
T PRK09700 413 GNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILT 492 (510)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999999999998764 4789999999999876 499999999999998876
Q ss_pred h
Q 001041 604 H 604 (1178)
Q Consensus 604 ~ 604 (1178)
.
T Consensus 493 ~ 493 (510)
T PRK09700 493 N 493 (510)
T ss_pred C
Confidence 5
No 365
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.2e-33 Score=342.71 Aligned_cols=210 Identities=21% Similarity=0.349 Sum_probs=173.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCH-HHHhcc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRKK 461 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~-~~~r~~ 461 (1178)
.++++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. +.+|++
T Consensus 257 ~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 328 (501)
T PRK10762 257 RLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANG 328 (501)
T ss_pred EEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCC
Confidence 488999873 37999999999999999999999999999999999999999999999999877664 346778
Q ss_pred eEEEcCCC---CCC-cccHHHHHhcCCCC--------CCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHH
Q 001041 462 IGLVSQEP---VLF-TGSIKDNIAYGKDD--------ATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQK 528 (1178)
Q Consensus 462 i~~v~Q~~---~l~-~~ti~~ni~~~~~~--------~~~~~~~~~~~~~~~~~~i~~~~~g~~-t~~~~~g~~lSgGqk 528 (1178)
++|+||+| .++ ..|++||+.++... .+.++. ...+.+.++.+ |+. .........||||||
T Consensus 329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgGek 401 (501)
T PRK10762 329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADE-----QQAVSDFIRLF--NIKTPSMEQAIGLLSGGNQ 401 (501)
T ss_pred CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHH-----HHHHHHHHHhc--CCCCCCccCchhhCCHHHH
Confidence 99999997 344 57999999874210 011111 11223444444 442 345667788999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhH
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 606 (1178)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|+++..|++++
T Consensus 402 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 481 (501)
T PRK10762 402 QKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQ 481 (501)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecccc
Confidence 99999999999999999999999999999999999998875 47899999999998865 99999999999999998776
Q ss_pred H
Q 001041 607 L 607 (1178)
Q Consensus 607 l 607 (1178)
+
T Consensus 482 ~ 482 (501)
T PRK10762 482 A 482 (501)
T ss_pred C
Confidence 4
No 366
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.4e-33 Score=306.11 Aligned_cols=193 Identities=24% Similarity=0.408 Sum_probs=155.8
Q ss_pred EECCCCCCCccccceeEEEe-----CCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEE
Q 001041 391 FSYPARPNEQIFSGFSISIS-----SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465 (1178)
Q Consensus 391 ~~y~~~~~~~~l~~i~l~i~-----~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v 465 (1178)
|+|+.. .+.++|++|+++ +||+++|+||||||||||+++|+|+++|++|+|.++|. +|+|+
T Consensus 1 ~~y~~~--~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~ 66 (246)
T cd03237 1 YTYPTM--KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYK 66 (246)
T ss_pred CCCccc--ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEe
Confidence 568643 358889999887 69999999999999999999999999999999999984 69999
Q ss_pred cCCCC-CCcccHHHHHhcCCCCC-C-HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCC
Q 001041 466 SQEPV-LFTGSIKDNIAYGKDDA-T-TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1178)
Q Consensus 466 ~Q~~~-l~~~ti~~ni~~~~~~~-~-~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~ 542 (1178)
||++. .+..|++||+.+..... . .+...+++ +.+ |++........+||||||||++|||||+++|+
T Consensus 67 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l---------~~l--~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~ 135 (246)
T cd03237 67 PQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIA---------KPL--QIEQILDREVPELSGGELQRVAIAACLSKDAD 135 (246)
T ss_pred cccccCCCCCCHHHHHHHHhhhccccHHHHHHHH---------HHc--CCHHHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 99996 46899999997543211 1 11122222 222 45545566677899999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEE--EecChhHHh
Q 001041 543 ILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIV--EKGTHSKLV 608 (1178)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~--~~g~~~~l~ 608 (1178)
++||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|+++..+ ..++|.++.
T Consensus 136 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 136 IYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence 9999999999999999999999988753 7899999999999875 9999999765443 455666554
No 367
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-33 Score=341.12 Aligned_cols=212 Identities=24% Similarity=0.345 Sum_probs=173.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCH-HHHhcc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRKK 461 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~-~~~r~~ 461 (1178)
.++++|+++. .+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... +..|..
T Consensus 257 ~l~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 329 (501)
T PRK11288 257 RLRLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG 329 (501)
T ss_pred EEEEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence 4889999732 38999999999999999999999999999999999999999999999998865433 455678
Q ss_pred eEEEcCCCC---CC-cccHHHHHhcCCCCC--------CHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHH
Q 001041 462 IGLVSQEPV---LF-TGSIKDNIAYGKDDA--------TTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQK 528 (1178)
Q Consensus 462 i~~v~Q~~~---l~-~~ti~~ni~~~~~~~--------~~~~~~~~~~~~~~~~~i~~~~~g~~-t~~~~~g~~lSgGqk 528 (1178)
++|+||+|. +| ..|+.||+.++.... ...+. ...+.+.++.+ |++ ........+||||||
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~ 402 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWE-----AENADRFIRSL--NIKTPSREQLIMNLSGGNQ 402 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHH-----HHHHHHHHHhc--CcccCCccCccccCCHHHH
Confidence 999999973 55 589999998753211 11111 11123344444 442 334566678999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhH
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 606 (1178)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++. .+.|+|+|||+++.+.. ||++++|++|++++.|++++
T Consensus 403 qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~ 482 (501)
T PRK11288 403 QKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQ 482 (501)
T ss_pred HHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999999998865 37899999999999864 99999999999999998876
Q ss_pred Hh
Q 001041 607 LV 608 (1178)
Q Consensus 607 l~ 608 (1178)
..
T Consensus 483 ~~ 484 (501)
T PRK11288 483 AT 484 (501)
T ss_pred CC
Confidence 54
No 368
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=3.8e-33 Score=278.95 Aligned_cols=143 Identities=38% Similarity=0.598 Sum_probs=133.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
++++|+++.|++ .++++++||++++||+++|+|+||||||||+++|.|+++|++|+|.++|. ..++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 66 (144)
T cd03221 1 IELENLSKTYGG---KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIG 66 (144)
T ss_pred CEEEEEEEEECC---ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEE
Confidence 468999999964 36999999999999999999999999999999999999999999999984 4799
Q ss_pred EEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCE
Q 001041 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1178)
Q Consensus 464 ~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~i 543 (1178)
|++| ||+||+||++||||++++|++
T Consensus 67 ~~~~-------------------------------------------------------lS~G~~~rv~laral~~~p~i 91 (144)
T cd03221 67 YFEQ-------------------------------------------------------LSGGEKMRLALAKLLLENPNL 91 (144)
T ss_pred EEcc-------------------------------------------------------CCHHHHHHHHHHHHHhcCCCE
Confidence 9999 999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCE
Q 001041 544 LLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGK 597 (1178)
Q Consensus 544 lllDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~ 597 (1178)
+||||||++||+.+...+.+.++++ ++|++++||+++.+.. ||++++|++|+
T Consensus 92 lllDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 92 LLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999876 4799999999999865 89999999985
No 369
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=2e-33 Score=371.90 Aligned_cols=213 Identities=22% Similarity=0.423 Sum_probs=178.8
Q ss_pred cEEEEeEEEECCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC---CCCCcEEECCeecCCCCHHHH
Q 001041 383 DIELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD---PQAGEVLIDGINLKEFQLQWI 458 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~---~~~G~i~i~g~~~~~~~~~~~ 458 (1178)
.++++|++++|+.++ ++++|+|+|+++++||+++|+||||||||||+++|.|..+ |++|+|.+||+++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 378999999996322 3579999999999999999999999999999999999997 68899999999874 246
Q ss_pred hcceEEEcCCCC-CCcccHHHHHhcCC----C-CCCHHH----HHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 001041 459 RKKIGLVSQEPV-LFTGSIKDNIAYGK----D-DATTEE----IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1178)
Q Consensus 459 r~~i~~v~Q~~~-l~~~ti~~ni~~~~----~-~~~~~~----~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqk 528 (1178)
|+.++||+|++. ++..|||||+.|+. | ..++++ +.++++..+ +.+-.|+.+|+.|.+||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~-------L~~~~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLE-------MESYADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcC-------ChhhCCCeeCCCCCCCCHHHh
Confidence 889999999875 55789999999752 2 123322 233333333 333468889988889999999
Q ss_pred HHHHHHHHhccCCC-EEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchh--hccCEEEEEeCC-EEEEecC
Q 001041 529 QRIAIARAILKDPR-ILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTV--RNADMIAVIHRG-KIVEKGT 603 (1178)
Q Consensus 529 qri~lARal~~~~~-illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~--~~~d~i~~l~~G-~i~~~g~ 603 (1178)
||++|||||+.+|+ ||+||||||+||+.+...+.+.++++. +++|+|+++|+++.. ..+|++++|++| ++++.|+
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence 99999999999997 999999999999999999999998874 579999999999963 579999999987 9999999
Q ss_pred hhH
Q 001041 604 HSK 606 (1178)
Q Consensus 604 ~~~ 606 (1178)
+.+
T Consensus 988 ~~~ 990 (1394)
T TIGR00956 988 LGE 990 (1394)
T ss_pred ccc
Confidence 754
No 370
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.6e-33 Score=278.50 Aligned_cols=202 Identities=28% Similarity=0.477 Sum_probs=172.5
Q ss_pred CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCC--CC-cc
Q 001041 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPV--LF-TG 474 (1178)
Q Consensus 398 ~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~--l~-~~ 474 (1178)
++++|+++|++|+.|+++-|+|.+|||||||+++|.|.+.|++|+|.|||+|+...+.+..-..++-|+|||- .| +-
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~l 97 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPEL 97 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccc
Confidence 4689999999999999999999999999999999999999999999999999999999988888999999995 33 67
Q ss_pred cHHHHHhcCCCC-----CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCC
Q 001041 475 SIKDNIAYGKDD-----ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEA 549 (1178)
Q Consensus 475 ti~~ni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ 549 (1178)
||.||+.+.... .+.. ...-+.....+.+..+|.|++..++.+..-|||||||-++|+.|.++.|+||+|||-
T Consensus 98 TieENl~la~~Rg~~rgl~~~--ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEH 175 (263)
T COG1101 98 TIEENLALAESRGKKRGLSSA--LNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEH 175 (263)
T ss_pred cHHHHHHHHHhcCcccccchh--hhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecch
Confidence 999999875321 1111 111122333456888999999999999889999999999999999999999999999
Q ss_pred CCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchh-hccCEEEEEeCCEEEEe
Q 001041 550 TSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEK 601 (1178)
Q Consensus 550 ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~-~~~d~i~~l~~G~i~~~ 601 (1178)
|+||||.+...+.+.-.+.- .+-|.++|||+++.. ...+|.++|++|+|+-.
T Consensus 176 TAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlD 230 (263)
T COG1101 176 TAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLD 230 (263)
T ss_pred hhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEE
Confidence 99999999998877665543 245999999999875 56799999999999953
No 371
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-33 Score=338.04 Aligned_cols=202 Identities=21% Similarity=0.363 Sum_probs=168.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +.++
T Consensus 319 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 384 (530)
T PRK15064 319 ALEVENLTKGFDN---GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE-----------NANI 384 (530)
T ss_pred eEEEEeeEEeeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-----------ceEE
Confidence 5999999999963 3599999999999999999999999999999999999999999999988 3479
Q ss_pred EEEcCCCC--CC-cccHHHHHhcCC-CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhc
Q 001041 463 GLVSQEPV--LF-TGSIKDNIAYGK-DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1178)
Q Consensus 463 ~~v~Q~~~--l~-~~ti~~ni~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~ 538 (1178)
+|++|++. ++ ..|+++|+.+.. +...++++...++..++. .........+||||||||++||||++
T Consensus 385 ~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LSgGq~qrv~la~al~ 454 (530)
T PRK15064 385 GYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFS----------QDDIKKSVKVLSGGEKGRMLFGKLMM 454 (530)
T ss_pred EEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCC----------hhHhcCcccccCHHHHHHHHHHHHHh
Confidence 99999984 44 369999997532 112233344444333221 12345667889999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEE-EecChhHHhcC
Q 001041 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIV-EKGTHSKLVED 610 (1178)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~-~~g~~~~l~~~ 610 (1178)
.+|++|||||||++||+.+...+.+.++++ +.|+|+|||+++.+.. ||+|++|++|+++ +.|+++++++.
T Consensus 455 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 455 QKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 999999999999999999999999999876 4699999999999875 9999999999998 78998887654
No 372
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=4.1e-33 Score=305.24 Aligned_cols=201 Identities=22% Similarity=0.362 Sum_probs=158.1
Q ss_pred EeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEE-----------ECCeecCCCCH
Q 001041 387 RDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL-----------IDGINLKEFQL 455 (1178)
Q Consensus 387 ~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~-----------i~g~~~~~~~~ 455 (1178)
.|++++|+. ..++|+|+|+ +++||+++|+||||||||||+++|+|+++|++|+|. ++|+++.+...
T Consensus 4 ~~~~~~y~~--~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~ 80 (255)
T cd03236 4 DEPVHRYGP--NSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFT 80 (255)
T ss_pred cCcceeecC--cchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhH
Confidence 478899963 2359999995 999999999999999999999999999999999996 78888766543
Q ss_pred HHHhc--ceEEEcCCCCCCcccHHHHHhcCCCCCC-HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHH
Q 001041 456 QWIRK--KIGLVSQEPVLFTGSIKDNIAYGKDDAT-TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIA 532 (1178)
Q Consensus 456 ~~~r~--~i~~v~Q~~~l~~~ti~~ni~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~ 532 (1178)
...|. .++|++|++.++..++.+|+.+...... +++.. +.++.+ |++........+||||||||++
T Consensus 81 ~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~---------~~l~~~--gl~~~~~~~~~~LS~G~~qrv~ 149 (255)
T cd03236 81 KLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLD---------ELVDQL--ELRHVLDRNIDQLSGGELQRVA 149 (255)
T ss_pred HhhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHH---------HHHHHc--CCchhhcCChhhCCHHHHHHHH
Confidence 33332 4789999887766566666553211111 12222 233333 5555667777899999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc-CCeEEEEecCcchhhc-cCEEEEEeCCEEEEec
Q 001041 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 533 lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1178)
||||++++|+++||||||++||+.+.+.+.+.++++.+ ++|+|+|||+++.+.. ||+|++|+ |++.+.|
T Consensus 150 laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 150 IAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred HHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcce
Confidence 99999999999999999999999999999999987754 6899999999999875 99999995 6666543
No 373
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=7.9e-33 Score=335.75 Aligned_cols=211 Identities=18% Similarity=0.350 Sum_probs=172.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHH-Hhcc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW-IRKK 461 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~-~r~~ 461 (1178)
.++++|++. .+|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+... .|.+
T Consensus 268 ~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 339 (510)
T PRK15439 268 VLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARG 339 (510)
T ss_pred eEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 488999972 1699999999999999999999999999999999999999999999999988776554 4568
Q ss_pred eEEEcCCCC---CCc-ccHHHHHhcCC----CC-CCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHHHHH
Q 001041 462 IGLVSQEPV---LFT-GSIKDNIAYGK----DD-ATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRI 531 (1178)
Q Consensus 462 i~~v~Q~~~---l~~-~ti~~ni~~~~----~~-~~~~~~~~~~~~~~~~~~i~~~~~g~~-t~~~~~g~~lSgGqkqri 531 (1178)
++|+||++. +|. .|+.+|+.... +. ....+.+ ..+.+.++.+ |+. .........||||||||+
T Consensus 340 i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgG~kqrl 412 (510)
T PRK15439 340 LVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPAREN-----AVLERYRRAL--NIKFNHAEQAARTLSGGNQQKV 412 (510)
T ss_pred cEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHH-----HHHHHHHHHc--CCCCCCccCccccCCcHHHHHH
Confidence 999999862 554 59999986321 10 0111111 1223444544 454 345666788999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHh
Q 001041 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608 (1178)
Q Consensus 532 ~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 608 (1178)
+||||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+++..|+++++.
T Consensus 413 ~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 491 (510)
T PRK15439 413 LIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAIN 491 (510)
T ss_pred HHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCC
Confidence 99999999999999999999999999999999998864 47899999999999865 9999999999999999887664
No 374
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=1.6e-32 Score=293.84 Aligned_cols=185 Identities=16% Similarity=0.233 Sum_probs=149.4
Q ss_pred cccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEE-ECCeecCCCCHHHHhcceEEEcCCCCCCc-ccHHH
Q 001041 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL-IDGINLKEFQLQWIRKKIGLVSQEPVLFT-GSIKD 478 (1178)
Q Consensus 401 ~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~-i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-~ti~~ 478 (1178)
+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|. ++|..+ .+.|++.+|. .|++|
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-------------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-------------PLGANSFILPGLTGEE 68 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-------------ccccccccCCcCcHHH
Confidence 78999999999999999999999999999999999999999997 777432 2345677776 49999
Q ss_pred HHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHH
Q 001041 479 NIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556 (1178)
Q Consensus 479 ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~ 556 (1178)
|+.+... ..+.++....+ .+ ...++...++ ....||||||||++||||++.+|+++||||||+++|+.
T Consensus 69 nl~~~~~~~~~~~~~~~~~~-----~~-~~~l~~~~~~----~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 69 NARMMASLYGLDGDEFSHFC-----YQ-LTQLEQCYTD----RVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHHcCCCHHHHHHHH-----HH-HhChhHHhhc----hHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 9987432 12233322211 11 1223333333 34569999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHh
Q 001041 557 SEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLV 608 (1178)
Q Consensus 557 ~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 608 (1178)
+.+.+.+.+.+..+++|+|++||+++.+. .||+|++|++|++++.|+.++..
T Consensus 139 ~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 191 (213)
T PRK15177 139 TQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQAT 191 (213)
T ss_pred HHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHH
Confidence 99999988866566789999999999986 59999999999999999888764
No 375
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.2e-32 Score=265.37 Aligned_cols=219 Identities=25% Similarity=0.452 Sum_probs=171.3
Q ss_pred EEEEeEEEECCCC------CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHH
Q 001041 384 IELRDVYFSYPAR------PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW 457 (1178)
Q Consensus 384 i~~~~~~~~y~~~------~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~ 457 (1178)
++++|++.++..+ ....+.+.+||++++|+.+||+|.+|||||||.++|.|.++|++|+|.+||+++.--+-..
T Consensus 5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~ 84 (267)
T COG4167 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSF 84 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHh
Confidence 4556665444222 1234789999999999999999999999999999999999999999999999887666666
Q ss_pred HhcceEEEcCCCC-CCc----------ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChH
Q 001041 458 IRKKIGLVSQEPV-LFT----------GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1178)
Q Consensus 458 ~r~~i~~v~Q~~~-l~~----------~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgG 526 (1178)
..++|-+++|||- -|| +.++-|-.+ .+....+++.+.++.+++ +|+--+. ....||.|
T Consensus 85 R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~-~~~~R~~~i~~TL~~VGL------~Pdhan~----~~~~la~~ 153 (267)
T COG4167 85 RSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDL-EPEQRRKQIFETLRMVGL------LPDHANY----YPHMLAPG 153 (267)
T ss_pred hhhheeeeecCCccccChhhhhhhHhcchhhhcccC-ChHHHHHHHHHHHHHhcc------Ccccccc----chhhcCch
Confidence 6678999999993 232 222222221 122334555566666554 4432222 34679999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecC
Q 001041 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603 (1178)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 603 (1178)
||||+||||||.-+|+|+|-||+.++||.....++.+...++. .|-.-|.|+.++..+++ +|+|+||++|+++|.|+
T Consensus 154 QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~ 233 (267)
T COG4167 154 QKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGS 233 (267)
T ss_pred hHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCC
Confidence 9999999999999999999999999999999888887776553 36788999999999998 99999999999999999
Q ss_pred hhHHhcCCCc
Q 001041 604 HSKLVEDPEG 613 (1178)
Q Consensus 604 ~~~l~~~~~~ 613 (1178)
+.++++.+..
T Consensus 234 t~~v~a~P~~ 243 (267)
T COG4167 234 TADVLASPLH 243 (267)
T ss_pred hhhhhcCCcc
Confidence 9999987643
No 376
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.98 E-value=5.4e-32 Score=327.83 Aligned_cols=211 Identities=19% Similarity=0.336 Sum_probs=168.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHH-HHhcc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ-WIRKK 461 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~-~~r~~ 461 (1178)
.|+++|+++.| +++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++...+.. .++..
T Consensus 250 ~i~~~~l~~~~-----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 324 (491)
T PRK10982 250 ILEVRNLTSLR-----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHG 324 (491)
T ss_pred EEEEeCccccc-----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCC
Confidence 58999999874 2489999999999999999999999999999999999999999999999999876654 45677
Q ss_pred eEEEcCCCC---CCc-ccHHHH-----HhcCCCC---CCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHH
Q 001041 462 IGLVSQEPV---LFT-GSIKDN-----IAYGKDD---ATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQK 528 (1178)
Q Consensus 462 i~~v~Q~~~---l~~-~ti~~n-----i~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~g~~-t~~~~~g~~lSgGqk 528 (1178)
++|+||++. +|. .|+.+| +.+.... .+..+.. ....+.++.+ |+. ........+||||||
T Consensus 325 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~ 397 (491)
T PRK10982 325 FALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMK-----SDTQWVIDSM--RVKTPGHRTQIGSLSGGNQ 397 (491)
T ss_pred CEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHH-----HHHHHHHHhc--CccCCCcccccccCCcHHH
Confidence 999999963 453 577666 3321111 1111111 1122344444 332 234666788999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChh
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHS 605 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 605 (1178)
||++||||++.+|+||||||||++||+.+...+.+.++++. +++|+|+|||+++.+.. ||++++|++|+++..++.+
T Consensus 398 qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~ 476 (491)
T PRK10982 398 QKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTK 476 (491)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEccc
Confidence 99999999999999999999999999999999999997764 47899999999998864 9999999999999877654
No 377
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.98 E-value=3e-32 Score=330.29 Aligned_cols=208 Identities=27% Similarity=0.370 Sum_probs=164.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-CCCcEEECCeecCC-CCHHHHhc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-QAGEVLIDGINLKE-FQLQWIRK 460 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-~~G~i~i~g~~~~~-~~~~~~r~ 460 (1178)
.++++|+++.|++ ..+|+|+||++++||+++|+||||||||||+++|+|+.++ ++|+|.++|.++.. ......|.
T Consensus 260 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 336 (490)
T PRK10938 260 RIVLNNGVVSYND---RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKK 336 (490)
T ss_pred eEEEeceEEEECC---eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHh
Confidence 5999999999963 3599999999999999999999999999999999998876 69999999987632 23344677
Q ss_pred ceEEEcCCCCCC---cccHHHHHhcCCCC-------CCHHHHHHHHHHhcHHHHHHhCCCCccc-hhcCCCCCCChHHHH
Q 001041 461 KIGLVSQEPVLF---TGSIKDNIAYGKDD-------ATTEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSGGQKQ 529 (1178)
Q Consensus 461 ~i~~v~Q~~~l~---~~ti~~ni~~~~~~-------~~~~~~~~~~~~~~~~~~i~~~~~g~~t-~~~~~g~~lSgGqkq 529 (1178)
+++|++|++.++ ..++++++.++... ...+. . ..+.+.++.+ |+.. .......+|||||||
T Consensus 337 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~q 408 (490)
T PRK10938 337 HIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQ-Q-----KLAQQWLDIL--GIDKRTADAPFHSLSWGQQR 408 (490)
T ss_pred hceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHH-H-----HHHHHHHHHc--CCchhhccCchhhCCHHHHH
Confidence 899999998654 24777777543110 11111 1 0112233333 4444 445566789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc-C-CeEEEEecCcchhhc--cCEEEEEeCCEEEEe
Q 001041 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-N-RTTVIVAHRLSTVRN--ADMIAVIHRGKIVEK 601 (1178)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~-~t~i~itH~~~~~~~--~d~i~~l~~G~i~~~ 601 (1178)
|++||||++.+|++|||||||++||+++.+.+.+.|+++.+ + .|+|+|||+++.+.. ||++++|++|+|++.
T Consensus 409 rv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 409 LALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred HHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEe
Confidence 99999999999999999999999999999999999988753 3 469999999999864 799999999999864
No 378
>PLN03073 ABC transporter F family; Provisional
Probab=99.98 E-value=1.2e-31 Score=331.68 Aligned_cols=200 Identities=27% Similarity=0.400 Sum_probs=161.2
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcc
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1178)
..++++|+++.|++ .+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +.+
T Consensus 507 ~~L~~~~ls~~y~~--~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~ 573 (718)
T PLN03073 507 PIISFSDASFGYPG--GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVR 573 (718)
T ss_pred ceEEEEeeEEEeCC--CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------cee
Confidence 35999999999963 23599999999999999999999999999999999999999999999876 347
Q ss_pred eEEEcCCCCCCcccHHHHHhcC----CCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHh
Q 001041 462 IGLVSQEPVLFTGSIKDNIAYG----KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1178)
Q Consensus 462 i~~v~Q~~~l~~~ti~~ni~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal 537 (1178)
|+|++|++. ...++.+|..+. .+...++++..+++..++.+ .........||||||||++||||+
T Consensus 574 igyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~----------~~~~~~~~~LSgGqkqRvaLAraL 642 (718)
T PLN03073 574 MAVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTG----------NLALQPMYTLSGGQKSRVAFAKIT 642 (718)
T ss_pred EEEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCCh----------HHhcCCccccCHHHHHHHHHHHHH
Confidence 999999873 233455553211 12234455555554444321 123445678999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEE-EecChhHH
Q 001041 538 LKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIV-EKGTHSKL 607 (1178)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~-~~g~~~~l 607 (1178)
+.+|++|||||||++||+.+...+.+.+... + .|+|+|||+++.+.. ||+|++|++|+++ ..|+++++
T Consensus 643 ~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 643 FKKPHILLLDEPSNHLDLDAVEALIQGLVLF-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 9999999999999999999988888888765 3 599999999999875 9999999999998 67877664
No 379
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.98 E-value=5.7e-32 Score=277.54 Aligned_cols=151 Identities=27% Similarity=0.356 Sum_probs=133.8
Q ss_pred EeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEc
Q 001041 387 RDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVS 466 (1178)
Q Consensus 387 ~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~ 466 (1178)
.|++++|++ .+++++ +|++++||+++|+||||||||||+++|+|+++|++|+|.++|. .++|++
T Consensus 4 ~~l~~~~~~---~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~------------~i~~~~ 67 (177)
T cd03222 4 PDCVKRYGV---FFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI------------TPVYKP 67 (177)
T ss_pred CCeEEEECC---EEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE------------EEEEEc
Confidence 588999963 468888 4999999999999999999999999999999999999999995 489999
Q ss_pred CCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEE
Q 001041 467 QEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLL 546 (1178)
Q Consensus 467 Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illl 546 (1178)
|++. ||||||||++||||++.+|++++|
T Consensus 68 q~~~----------------------------------------------------LSgGq~qrv~laral~~~p~lllL 95 (177)
T cd03222 68 QYID----------------------------------------------------LSGGELQRVAIAAALLRNATFYLF 95 (177)
T ss_pred ccCC----------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9763 999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHHHHHHh-cC-CeEEEEecCcchhhc-cCEEEEEeCCEEEEe--cChh
Q 001041 547 DEATSALDAESEKVVQEALDRIM-VN-RTTVIVAHRLSTVRN-ADMIAVIHRGKIVEK--GTHS 605 (1178)
Q Consensus 547 De~ts~lD~~~~~~i~~~i~~~~-~~-~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~--g~~~ 605 (1178)
||||++||+++.+.+.+.+++.. ++ +|+|++||+++.+.. ||++++|+++-.+.. |.|.
T Consensus 96 DEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~ 159 (177)
T cd03222 96 DEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPK 159 (177)
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCc
Confidence 99999999999999999998865 33 899999999999875 999999998755532 5544
No 380
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.98 E-value=6.9e-32 Score=251.91 Aligned_cols=195 Identities=28% Similarity=0.431 Sum_probs=157.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC---CCcEEECCeecCCCCHHHHh
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ---AGEVLIDGINLKEFQLQWIR 459 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~---~G~i~i~g~~~~~~~~~~~r 459 (1178)
.+.++||+.+-++ .-.|.|+||+|.+||++-+.||||||||||+.-+.|.+.+. +|++.+|++++..++.+ +
T Consensus 2 ~l~l~nvsl~l~g---~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~--q 76 (213)
T COG4136 2 MLCLKNVSLRLPG---SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--Q 76 (213)
T ss_pred ceeeeeeeecCCC---ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh--h
Confidence 4678999988764 45899999999999999999999999999999999999874 79999999999988876 4
Q ss_pred cceEEEcCCCCCCc-ccHHHHHhcCCCCCCHH-----HHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHH
Q 001041 460 KKIGLVSQEPVLFT-GSIKDNIAYGKDDATTE-----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1178)
Q Consensus 460 ~~i~~v~Q~~~l~~-~ti~~ni~~~~~~~~~~-----~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~l 533 (1178)
+++|+.+||||+|. -+|-+||.|..|..-.. ....+++.. |++-.-.....+||||||.||+|
T Consensus 77 Rq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~-----------gL~g~f~~dP~tlSGGQrARvaL 145 (213)
T COG4136 77 RQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERS-----------GLDGAFHQDPATLSGGQRARVAL 145 (213)
T ss_pred hheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHh-----------ccchhhhcChhhcCcchHHHHHH
Confidence 68999999999995 79999999987643222 222333333 44444455567899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHH--hcCCeEEEEecCcchhhccCEEEEE
Q 001041 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRI--MVNRTTVIVAHRLSTVRNADMIAVI 593 (1178)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~--~~~~t~i~itH~~~~~~~~d~i~~l 593 (1178)
-|+|+..|+.++||||+|.||..-..++.+-+-.. ..+--+++|||+.+-++...||+-|
T Consensus 146 ~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 146 LRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred HHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence 99999999999999999999998776666554322 2367889999999988755555544
No 381
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=3.4e-32 Score=275.45 Aligned_cols=214 Identities=24% Similarity=0.460 Sum_probs=183.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.+++++|+.+|+ +..+++|+||.++||++.+++|+||+||||.+++|+|+++|++|+|.++|.+++.. .+.+|
T Consensus 2 ~L~ie~vtK~Fg---~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~----~~~rI 74 (300)
T COG4152 2 ALEIEGVTKSFG---DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQE----IKNRI 74 (300)
T ss_pred ceEEecchhccC---ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhh----hhhhc
Confidence 478999999996 35699999999999999999999999999999999999999999999999887653 45689
Q ss_pred EEEcCCCCCC-cccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 463 GLVSQEPVLF-TGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 463 ~~v~Q~~~l~-~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
||.|.+--|+ ..||.|-|.|... .....++.. .+..|++++. +--....+...||-|.+|+|-+--|+++
T Consensus 75 GyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~-----~~~~wLer~~--i~~~~~~kIk~LSKGnqQKIQfisaviH 147 (300)
T COG4152 75 GYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQK-----KLQAWLERLE--IVGKKTKKIKELSKGNQQKIQFISAVIH 147 (300)
T ss_pred ccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHH-----HHHHHHHhcc--ccccccchHHHhhhhhhHHHHHHHHHhc
Confidence 9999999988 5899999998432 233444433 2345666653 2233445667899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
+|+++|||||+|+|||-+.+.+.+.+.++. +|.|+|+.|||++.+.. ||+++.|++|+.|-.|+.+++.+.
T Consensus 148 ePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~ 220 (300)
T COG4152 148 EPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRS 220 (300)
T ss_pred CCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHh
Confidence 999999999999999999999999998775 58999999999999976 999999999999999999988764
No 382
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.5e-31 Score=330.92 Aligned_cols=199 Identities=27% Similarity=0.405 Sum_probs=162.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.|+++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. .++
T Consensus 312 ~l~~~~l~~~y~~---~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 377 (638)
T PRK10636 312 LLKMEKVSAGYGD---RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKL 377 (638)
T ss_pred eEEEEeeEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEE
Confidence 5999999999963 46999999999999999999999999999999999999999999999741 269
Q ss_pred EEEcCCC--CCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHHHHHHHHHHhc
Q 001041 463 GLVSQEP--VLF-TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRIAIARAIL 538 (1178)
Q Consensus 463 ~~v~Q~~--~l~-~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~-t~~~~~g~~lSgGqkqri~lARal~ 538 (1178)
+|++|++ .+. ..|+.+++....+....+++...++.. |+. .........||||||||++||||++
T Consensus 378 gy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-----------~l~~~~~~~~~~~LSgGekqRl~La~~l~ 446 (638)
T PRK10636 378 GYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGF-----------GFQGDKVTEETRRFSGGEKARLVLALIVW 446 (638)
T ss_pred EEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHc-----------CCChhHhcCchhhCCHHHHHHHHHHHHHh
Confidence 9999985 343 347888874212222223333333332 332 2344556789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEE-EecChhHHh
Q 001041 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIV-EKGTHSKLV 608 (1178)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~-~~g~~~~l~ 608 (1178)
.+|++|||||||++||+.+...+.+.|.++ +.|+|+|||+++++.. ||+|++|++|+++ ..|+++++.
T Consensus 447 ~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 447 QRPNLLLLDEPTNHLDLDMRQALTEALIDF--EGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 999999999999999999999999999886 3599999999999875 9999999999997 788887763
No 383
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=2.2e-31 Score=271.88 Aligned_cols=154 Identities=41% Similarity=0.689 Sum_probs=143.3
Q ss_pred EEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEE
Q 001041 386 LRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465 (1178)
Q Consensus 386 ~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v 465 (1178)
++|+++.|+. .++++++||++++|++++|+|+||||||||+++|.|+++|.+|+|+++|.++........+..++|+
T Consensus 2 ~~~~~~~~~~---~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~ 78 (157)
T cd00267 2 IENLSFRYGG---RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYV 78 (157)
T ss_pred eEEEEEEeCC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEE
Confidence 6899999964 3699999999999999999999999999999999999999999999999998887777778899999
Q ss_pred cCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEE
Q 001041 466 SQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILL 545 (1178)
Q Consensus 466 ~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~ill 545 (1178)
+| ||||||||++||||++.+|++++
T Consensus 79 ~q-------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~i 103 (157)
T cd00267 79 PQ-------------------------------------------------------LSGGQRQRVALARALLLNPDLLL 103 (157)
T ss_pred ee-------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEE
Confidence 99 99999999999999999999999
Q ss_pred EeCCCCCCCHHhHHHHHHHHHHHhc-CCeEEEEecCcchhhc-cCEEEEEeCCE
Q 001041 546 LDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGK 597 (1178)
Q Consensus 546 lDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~ 597 (1178)
|||||++||+++...+.+.+.+..+ ++|++++||+++.+.. ||+++++++|+
T Consensus 104 lDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 104 LDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 9999999999999999999987654 4899999999999987 69999999875
No 384
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.97 E-value=2e-31 Score=326.53 Aligned_cols=202 Identities=24% Similarity=0.380 Sum_probs=164.7
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcc
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1178)
..++++|+++.|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ + .+
T Consensus 323 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~----------~~ 388 (556)
T PRK11819 323 KVIEAENLSKSFGD---RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T----------VK 388 (556)
T ss_pred eEEEEEeEEEEECC---eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c----------eE
Confidence 35999999999963 3699999999999999999999999999999999999999999999954 1 16
Q ss_pred eEEEcCCC-CCC-cccHHHHHhcCCCCC----CHHHHHHHHHHhcHHHHHHhCCCCccc-hhcCCCCCCChHHHHHHHHH
Q 001041 462 IGLVSQEP-VLF-TGSIKDNIAYGKDDA----TTEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSGGQKQRIAIA 534 (1178)
Q Consensus 462 i~~v~Q~~-~l~-~~ti~~ni~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~g~~t-~~~~~g~~lSgGqkqri~lA 534 (1178)
|+|+||++ .++ ..|++||+.++.... .+.+.. +.+..+ |+.. .......+||||||||++||
T Consensus 389 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~---------~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~la 457 (556)
T PRK11819 389 LAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSR---------AYVGRF--NFKGGDQQKKVGVLSGGERNRLHLA 457 (556)
T ss_pred EEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHH---------HHHHhC--CCChhHhcCchhhCCHHHHHHHHHH
Confidence 99999997 555 469999998754211 111111 123333 3432 24556678999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeC-CEEE-EecChhHHhcC
Q 001041 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHR-GKIV-EKGTHSKLVED 610 (1178)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~-G~i~-~~g~~~~l~~~ 610 (1178)
||++.+|++|||||||++||+.+...+.+.|.++ + .|+|+|||+++.+.. ||+|++|++ |++. ..|+++++.++
T Consensus 458 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 458 KTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF-P-GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 9999999999999999999999999999999886 3 489999999998865 999999986 7887 47777776543
No 385
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.97 E-value=3.2e-31 Score=271.81 Aligned_cols=211 Identities=28% Similarity=0.445 Sum_probs=174.7
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCH-HHHhc
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRK 460 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~-~~~r~ 460 (1178)
.-|+++||++.|. ++++|+|||++|++||..+|+||||||||||++++.|+++|++|.+.+-|+.....+. .++|+
T Consensus 30 ~li~l~~v~v~r~---gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk 106 (257)
T COG1119 30 PLIELKNVSVRRN---GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRK 106 (257)
T ss_pred ceEEecceEEEEC---CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHH
Confidence 3599999999996 4579999999999999999999999999999999999999999999999999988887 89999
Q ss_pred ceEEEcCCCC---CCcccHHHHHhcCC------C--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHH
Q 001041 461 KIGLVSQEPV---LFTGSIKDNIAYGK------D--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1178)
Q Consensus 461 ~i~~v~Q~~~---l~~~ti~~ni~~~~------~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkq 529 (1178)
+||+|+-.-. .-+.+++|-++=|. . .+++++..++-. .++.+ |.....++.-..||-||||
T Consensus 107 ~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~------lle~~--g~~~la~r~~~~LS~Ge~r 178 (257)
T COG1119 107 RIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQW------LLELL--GAKHLADRPFGSLSQGEQR 178 (257)
T ss_pred HhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHH------HHHHc--chhhhccCchhhcCHhHHH
Confidence 9999985432 22567787776442 1 344444333222 12222 5555566667889999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc---CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecC
Q 001041 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV---NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603 (1178)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~---~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 603 (1178)
|+-||||++.+|++||||||+++||....+.+.+.+.++.. ..|+|+|||+.+.+.. .++++.+++|+++.+|.
T Consensus 179 rvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 179 RVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 99999999999999999999999999999988888887753 4689999999998865 69999999999998763
No 386
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.97 E-value=2.6e-31 Score=325.60 Aligned_cols=199 Identities=24% Similarity=0.372 Sum_probs=163.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ + .+|
T Consensus 322 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~----------~~i 387 (552)
T TIGR03719 322 VIEAENLSKGFGD---KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T----------VKL 387 (552)
T ss_pred EEEEeeEEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c----------eEE
Confidence 5999999999963 3699999999999999999999999999999999999999999999954 1 169
Q ss_pred EEEcCCC-CCC-cccHHHHHhcCCCCC--C--HHHHHHHHHHhcHHHHHHhCCCCccc-hhcCCCCCCChHHHHHHHHHH
Q 001041 463 GLVSQEP-VLF-TGSIKDNIAYGKDDA--T--TEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSGGQKQRIAIAR 535 (1178)
Q Consensus 463 ~~v~Q~~-~l~-~~ti~~ni~~~~~~~--~--~~~~~~~~~~~~~~~~i~~~~~g~~t-~~~~~g~~lSgGqkqri~lAR 535 (1178)
+|++|++ .++ ..|++||+.++.... . +.+.. +.+..+ |+.. .......+||||||||++|||
T Consensus 388 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~---------~~l~~~--~l~~~~~~~~~~~LSgGe~qrv~la~ 456 (552)
T TIGR03719 388 AYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSR---------AYVGRF--NFKGSDQQKKVGQLSGGERNRVHLAK 456 (552)
T ss_pred EEEeCCccccCCCCcHHHHHHhhccccccCcchHHHH---------HHHHhC--CCChhHhcCchhhCCHHHHHHHHHHH
Confidence 9999997 355 469999999864311 1 11111 233333 4432 245566789999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeC-CEEE-EecChhHHh
Q 001041 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHR-GKIV-EKGTHSKLV 608 (1178)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~-G~i~-~~g~~~~l~ 608 (1178)
|++.+|++|||||||++||+.+...+.+.|+++ . .|+|+|||+++.+.. ||+|++|++ |++. ..|+++++.
T Consensus 457 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~ 530 (552)
T TIGR03719 457 TLKSGGNVLLLDEPTNDLDVETLRALEEALLEF-A-GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYE 530 (552)
T ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC-C-CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHH
Confidence 999999999999999999999999999999886 3 489999999999875 999999996 5876 457776554
No 387
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.97 E-value=2.3e-30 Score=289.37 Aligned_cols=215 Identities=25% Similarity=0.352 Sum_probs=142.8
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEE--CCeecCCCCHHHHh
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI--DGINLKEFQLQWIR 459 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i--~g~~~~~~~~~~~r 459 (1178)
..|.++|++++|++ .++++|..|++.+|++++|+|++||||||+|++|.|--.|..-++-+ -..++..-....++
T Consensus 74 ~dvk~~sls~s~~g---~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~ 150 (614)
T KOG0927|consen 74 RDVKIESLSLSFHG---VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQ 150 (614)
T ss_pred ccceeeeeeeccCC---ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHH
Confidence 35899999999964 46999999999999999999999999999999999876665433321 11111111111111
Q ss_pred cceEEEcCCCCCCcccHH-------HHHhcCCCCCCHH---HHHHHHHHh-------cHHHHHHhCCCCccchhcCCCCC
Q 001041 460 KKIGLVSQEPVLFTGSIK-------DNIAYGKDDATTE---EIRVATELA-------NAAKFIDKLPQGIDTLVGEHGTQ 522 (1178)
Q Consensus 460 ~~i~~v~Q~~~l~~~ti~-------~ni~~~~~~~~~~---~~~~~~~~~-------~~~~~i~~~~~g~~t~~~~~g~~ 522 (1178)
.-+ .+..+.+ |++.-..++...+ .++.-+... .+...+..+- -+.......-.+
T Consensus 151 ~v~--------~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glg-f~~~m~~k~~~~ 221 (614)
T KOG0927|consen 151 AVV--------METDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLG-FLSEMQDKKVKD 221 (614)
T ss_pred HHh--------hhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcC-CCHhHHHHHhhc
Confidence 000 0111111 1111110110101 111111100 1111111110 122344556678
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCE-EEE
Q 001041 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGK-IVE 600 (1178)
Q Consensus 523 lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~-i~~ 600 (1178)
||||||-|++|||||+.+|++|||||||++||.++..++.+.+.+.-.. ++++++|.-+++.. |.+|+.|++++ +.+
T Consensus 222 ~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y 300 (614)
T KOG0927|consen 222 LSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCTNIIHLDNKKLIYY 300 (614)
T ss_pred cCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhhhhheecccceeee
Confidence 9999999999999999999999999999999999999999999876322 89999999999986 99999999999 668
Q ss_pred ecChhHHhc
Q 001041 601 KGTHSKLVE 609 (1178)
Q Consensus 601 ~g~~~~l~~ 609 (1178)
.|+++.++.
T Consensus 301 ~Gnydqy~~ 309 (614)
T KOG0927|consen 301 EGNYDQYVK 309 (614)
T ss_pred cCCHHHHhh
Confidence 888887754
No 388
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=3.6e-31 Score=271.34 Aligned_cols=154 Identities=24% Similarity=0.431 Sum_probs=128.3
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHH
Q 001041 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKD 478 (1178)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ 478 (1178)
.++|+|+||++++|++++|+||||||||||++++++ .+|++.++|.. ... .+.+++|++|
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~-~~~----~~~~~~~~~q----------- 67 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFL-PKF----SRNKLIFIDQ----------- 67 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----cCCcEEECCcc-ccc----ccccEEEEhH-----------
Confidence 568999999999999999999999999999999963 68999998752 111 1345888887
Q ss_pred HHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccc-hhcCCCCCCChHHHHHHHHHHHhccC--CCEEEEeCCCCCCCH
Q 001041 479 NIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSGGQKQRIAIARAILKD--PRILLLDEATSALDA 555 (1178)
Q Consensus 479 ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t-~~~~~g~~lSgGqkqri~lARal~~~--~~illlDe~ts~lD~ 555 (1178)
. +.++.+ |+.. ...+...+||||||||++||||++++ |+++||||||++||+
T Consensus 68 --------------~---------~~l~~~--~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~ 122 (176)
T cd03238 68 --------------L---------QFLIDV--GLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQ 122 (176)
T ss_pred --------------H---------HHHHHc--CCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCH
Confidence 1 123333 3332 25667789999999999999999999 999999999999999
Q ss_pred HhHHHHHHHHHHHh-cCCeEEEEecCcchhhccCEEEEEeCCE
Q 001041 556 ESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVIHRGK 597 (1178)
Q Consensus 556 ~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~ 597 (1178)
++.+.+.+.++++. .++|+|+|||+++.+..||++++|++|+
T Consensus 123 ~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~ 165 (176)
T cd03238 123 QDINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGS 165 (176)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCC
Confidence 99999999998865 4799999999999988899999996643
No 389
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.97 E-value=4e-31 Score=328.16 Aligned_cols=202 Identities=26% Similarity=0.421 Sum_probs=161.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+ |.++ +|
T Consensus 319 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i 384 (635)
T PRK11147 319 VFEMENVNYQIDG---KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EV 384 (635)
T ss_pred eEEEeeeEEEECC---eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EE
Confidence 4899999999963 46999999999999999999999999999999999999999999998 4321 69
Q ss_pred EEEcCCC-CCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 463 GLVSQEP-VLF-TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 463 ~~v~Q~~-~l~-~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~-t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
+|++|++ .++ +.|+.||+.++.+......... .+.+.+..+ |+. .........||||||||++||||++.
T Consensus 385 ~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgGekqRl~la~al~~ 457 (635)
T PRK11147 385 AYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPR-----HVLGYLQDF--LFHPKRAMTPVKALSGGERNRLLLARLFLK 457 (635)
T ss_pred EEEeCcccccCCCCCHHHHHHhhcccccccchHH-----HHHHHHHhc--CCCHHHHhChhhhCCHHHHHHHHHHHHHhc
Confidence 9999986 355 4599999987543211000000 112223332 232 22344556899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEe-CCEEEE-ecChhHH
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIH-RGKIVE-KGTHSKL 607 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~-~G~i~~-~g~~~~l 607 (1178)
+|++|||||||++||+.+...+.+.++++ +.|+|+|||+.+++.. ||+|++|+ +|++.+ .|+|++.
T Consensus 458 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 458 PSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 99999999999999999999999999875 4699999999999865 99999998 899985 5666655
No 390
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=2.6e-31 Score=259.76 Aligned_cols=222 Identities=27% Similarity=0.488 Sum_probs=182.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECC-eecCCCCHHHH-hc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG-INLKEFQLQWI-RK 460 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g-~~~~~~~~~~~-r~ 460 (1178)
.++++|++.++++ -.+|+++||++.+||.-+|+||||+||||++-.|.|-.+|+.|+++++| .|+..++.+.+ |.
T Consensus 5 iL~~~~vsVsF~G---F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~ 81 (249)
T COG4674 5 ILYLDGVSVSFGG---FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARA 81 (249)
T ss_pred eEEEeceEEEEcc---eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHh
Confidence 4788999999963 4699999999999999999999999999999999999999999999999 99999998876 56
Q ss_pred ceEEEcCCCCCC-cccHHHHHhcCCCCCCHHHHHH-------HHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHH
Q 001041 461 KIGLVSQEPVLF-TGSIKDNIAYGKDDATTEEIRV-------ATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIA 532 (1178)
Q Consensus 461 ~i~~v~Q~~~l~-~~ti~~ni~~~~~~~~~~~~~~-------~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~ 532 (1178)
.|+-=+|.|..| +-||+||+....... ..+|. ..+..++++.+... |+..........||-||||++-
T Consensus 82 GIGRKFQ~PtVfe~ltV~eNLelA~~~~--k~v~a~L~~r~~~~e~~ride~La~i--gL~~~~~~~A~~LSHGqKQwLE 157 (249)
T COG4674 82 GIGRKFQKPTVFENLTVRENLELALNRD--KSVFASLFARLRAEERRRIDELLATI--GLGDERDRLAALLSHGQKQWLE 157 (249)
T ss_pred ccCccccCCeehhhccHHHHHHHHhcCC--cchHHHhhhhcChhHHHHHHHHHHHc--ccchhhhhhhhhhccchhhhhh
Confidence 799999999998 579999998753211 11111 11111222222222 5555556666789999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcCC
Q 001041 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDP 611 (1178)
Q Consensus 533 lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 611 (1178)
|+.-+.++|++|+||||++++-.+.....-+.++.+...+++++|.|++.+++. ||+|-||..|.+...|+.+++.+++
T Consensus 158 IGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~~dp 237 (249)
T COG4674 158 IGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQNDP 237 (249)
T ss_pred hheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccHHHhhcCc
Confidence 999999999999999999999554444566677777788999999999999986 9999999999999999999987653
No 391
>PRK13409 putative ATPase RIL; Provisional
Probab=99.97 E-value=5.2e-31 Score=320.76 Aligned_cols=192 Identities=27% Similarity=0.371 Sum_probs=160.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++++|++ ..|+++||++++||+++|+||||||||||+++|.|+++|++|+|.++ .++
T Consensus 340 ~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i 402 (590)
T PRK13409 340 LVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKI 402 (590)
T ss_pred EEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeE
Confidence 4899999999953 25999999999999999999999999999999999999999999886 169
Q ss_pred EEEcCCCCC-CcccHHHHHhcCCCCCC-HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccC
Q 001041 463 GLVSQEPVL-FTGSIKDNIAYGKDDAT-TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1178)
Q Consensus 463 ~~v~Q~~~l-~~~ti~~ni~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~ 540 (1178)
+|+||++.+ ++.|++||+.++..... ..... +.++.+ |++........+||||||||++|||||+++
T Consensus 403 ~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~---------~~L~~l--~l~~~~~~~~~~LSGGe~QRvaiAraL~~~ 471 (590)
T PRK13409 403 SYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKS---------EIIKPL--QLERLLDKNVKDLSGGELQRVAIAACLSRD 471 (590)
T ss_pred EEecccccCCCCCcHHHHHHHHhhhcChHHHHH---------HHHHHC--CCHHHHhCCcccCCHHHHHHHHHHHHHhcC
Confidence 999999864 57899999987532222 12222 233333 444445666778999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecC
Q 001041 541 PRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603 (1178)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 603 (1178)
|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++ ++...|+
T Consensus 472 p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 472 ADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 999999999999999999999999988753 6899999999998865 999999964 8877776
No 392
>PLN03140 ABC transporter G family member; Provisional
Probab=99.97 E-value=1.1e-30 Score=343.95 Aligned_cols=215 Identities=24% Similarity=0.394 Sum_probs=174.8
Q ss_pred ccEEEEeEEEECCCC----------CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC--CCCcEEECCee
Q 001041 382 GDIELRDVYFSYPAR----------PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP--QAGEVLIDGIN 449 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~----------~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~--~~G~i~i~g~~ 449 (1178)
..+.++||++..+.+ ....+|+|+|++++||++++|+||||||||||+++|.|..++ .+|+|.++|.+
T Consensus 866 ~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~ 945 (1470)
T PLN03140 866 LAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP 945 (1470)
T ss_pred ceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCcc
Confidence 368999999998532 123699999999999999999999999999999999998763 68999999987
Q ss_pred cCCCCHHHHhcceEEEcCCCCCC-cccHHHHHhcCC----C-CCCHH----HHHHHHHHhcHHHHHHhCCCCccchhcCC
Q 001041 450 LKEFQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYGK----D-DATTE----EIRVATELANAAKFIDKLPQGIDTLVGEH 519 (1178)
Q Consensus 450 ~~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~ni~~~~----~-~~~~~----~~~~~~~~~~~~~~i~~~~~g~~t~~~~~ 519 (1178)
.. ....|+.++||+|++.++ ..||+|||.|+. | ..+.+ .+.++++..++.+ -.++.+|..
T Consensus 946 ~~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~-------~~~~~vg~~ 1015 (1470)
T PLN03140 946 KK---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDN-------LKDAIVGLP 1015 (1470)
T ss_pred CC---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChh-------HhCCccCCC
Confidence 54 244667899999998766 579999998742 2 12222 2334444444332 236777755
Q ss_pred C-CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcch--hhccCEEEEEeC
Q 001041 520 G-TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLST--VRNADMIAVIHR 595 (1178)
Q Consensus 520 g-~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~--~~~~d~i~~l~~ 595 (1178)
+ ..||||||||++|||||+.+|+||+||||||+||+.+...+.+.++++. +++|+|+++|+++. ...+|++++|++
T Consensus 1016 ~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~ 1095 (1470)
T PLN03140 1016 GVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1095 (1470)
T ss_pred CCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcC
Confidence 4 5799999999999999999999999999999999999999999998875 47899999999984 467999999996
Q ss_pred -CEEEEecChhH
Q 001041 596 -GKIVEKGTHSK 606 (1178)
Q Consensus 596 -G~i~~~g~~~~ 606 (1178)
|++++.|+..+
T Consensus 1096 gG~~v~~G~~~~ 1107 (1470)
T PLN03140 1096 GGQVIYSGPLGR 1107 (1470)
T ss_pred CCEEEEECCccc
Confidence 89999998754
No 393
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=1.4e-28 Score=301.86 Aligned_cols=207 Identities=24% Similarity=0.371 Sum_probs=165.8
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC---CCCcEEECCeecCCCCHHHHhcceEEEcCCCCCC-cc
Q 001041 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP---QAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLF-TG 474 (1178)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~---~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~-~~ 474 (1178)
..+|+|++.-++||+.+.+.||.|||||||+++|.|..+- ..|+|..||.+.++.-. ++.++|++|+.+-+ ..
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEecccccccccee
Confidence 4699999999999999999999999999999999997754 35799999999988776 67899999988655 68
Q ss_pred cHHHHHhcCC----C--CCC-HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCC-CCChHHHHHHHHHHHhccCCCEEEE
Q 001041 475 SIKDNIAYGK----D--DAT-TEEIRVATELANAAKFIDKLPQGIDTLVGEHGT-QLSGGQKQRIAIARAILKDPRILLL 546 (1178)
Q Consensus 475 ti~~ni~~~~----~--~~~-~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~-~lSgGqkqri~lARal~~~~~illl 546 (1178)
||||-|.|.. + .++ -++.+..+......-.+-.|....||.||.+.. ..|||||.|+++|-++..+++++..
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~ 284 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFW 284 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeee
Confidence 9999999852 1 011 112221111111111233556678899998764 5999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcc--hhhccCEEEEEeCCEEEEecChhHHh
Q 001041 547 DEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLS--TVRNADMIAVIHRGKIVEKGTHSKLV 608 (1178)
Q Consensus 547 De~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~ 608 (1178)
||+|.+||+.|.-++.++++++.+ +.|.++.=|+.+ .....|+|++|.+|+++.+|+.++.+
T Consensus 285 De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~ 350 (1391)
T KOG0065|consen 285 DEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVL 350 (1391)
T ss_pred ecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHH
Confidence 999999999999999999988643 567666667654 56779999999999999999998875
No 394
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1e-29 Score=257.23 Aligned_cols=215 Identities=28% Similarity=0.474 Sum_probs=174.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcc--CCCCCCcEEECCeecCCCCHHH-Hh
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF--YDPQAGEVLIDGINLKEFQLQW-IR 459 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~--~~~~~G~i~i~g~~~~~~~~~~-~r 459 (1178)
.++++|++.+-.++ +++|+++||+|++||+.+|.||||||||||.++|+|. |++++|+|.+||.|+.++++++ -|
T Consensus 3 ~L~I~dLhv~v~~~--keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr 80 (251)
T COG0396 3 MLEIKDLHVEVEGK--KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERAR 80 (251)
T ss_pred eeEEeeeEEEecCc--hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHh
Confidence 47899999987532 4799999999999999999999999999999999995 6889999999999999999876 46
Q ss_pred cceEEEcCCCCCCcc-cHHHHHhcCCCC---------CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHH
Q 001041 460 KKIGLVSQEPVLFTG-SIKDNIAYGKDD---------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1178)
Q Consensus 460 ~~i~~v~Q~~~l~~~-ti~~ni~~~~~~---------~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkq 529 (1178)
..|...+|.|.=+.| |+.+-+..+... ...+++.++++..++++.. ++..++ ..+|||+|.
T Consensus 81 ~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~------l~R~vN---~GFSGGEkK 151 (251)
T COG0396 81 AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEF------LERYVN---EGFSGGEKK 151 (251)
T ss_pred cCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHH------hhcccC---CCcCcchHH
Confidence 779999999987765 666665532111 1123334444444433311 222333 359999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhcc--CEEEEEeCCEEEEecChhH
Q 001041 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNA--DMIAVIHRGKIVEKGTHSK 606 (1178)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~--d~i~~l~~G~i~~~g~~~~ 606 (1178)
|.-|+.+++.+|++.|||||-|+||..+-+.|.+.+..+. +++++++|||.-..+... |+|.||-+|+|+..|.+ +
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-e 230 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-E 230 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-H
Confidence 9999999999999999999999999999999999998876 478999999999888764 99999999999999999 6
Q ss_pred Hhc
Q 001041 607 LVE 609 (1178)
Q Consensus 607 l~~ 609 (1178)
|..
T Consensus 231 l~~ 233 (251)
T COG0396 231 LAE 233 (251)
T ss_pred HHH
Confidence 654
No 395
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=2.1e-29 Score=259.23 Aligned_cols=187 Identities=28% Similarity=0.422 Sum_probs=154.1
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCC--cccH
Q 001041 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLF--TGSI 476 (1178)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~--~~ti 476 (1178)
.++|+||||++++||.+||+|+||||||||+++|.|.++|++|+|.++| +|++.----.=| ..|-
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G-------------~v~~li~lg~Gf~pelTG 106 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG-------------KVAPLIELGAGFDPELTG 106 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcc-------------eEehhhhcccCCCcccch
Confidence 4699999999999999999999999999999999999999999999999 455433333223 4589
Q ss_pred HHHHhcCC--CCCCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCC
Q 001041 477 KDNIAYGK--DDATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 550 (1178)
Q Consensus 477 ~~ni~~~~--~~~~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~t 550 (1178)
||||.+-. ...+. +.+.+..+-++|.+++ .....+.|.|++.|++.|-|.-.+|||||+||.+
T Consensus 107 reNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi-----------~~PvktYSSGM~aRLaFsia~~~~pdILllDEvl 175 (249)
T COG1134 107 RENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFI-----------DQPVKTYSSGMYARLAFSVATHVEPDILLLDEVL 175 (249)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh-----------hCchhhccHHHHHHHHHhhhhhcCCCEEEEehhh
Confidence 99997621 11233 3334444445555543 3344689999999999999999999999999999
Q ss_pred CCCCHHhHHHHHHHHHHH-hcCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhc
Q 001041 551 SALDAESEKVVQEALDRI-MVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1178)
Q Consensus 551 s~lD~~~~~~i~~~i~~~-~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 609 (1178)
|..|+.=.+.-.+.+.++ .+++|+|+|+|+++.+++ ||++++|++|+|...|++++..+
T Consensus 176 avGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~ 236 (249)
T COG1134 176 AVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236 (249)
T ss_pred hcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHH
Confidence 999999887777777777 678999999999999976 99999999999999999999865
No 396
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.96 E-value=1.3e-25 Score=248.78 Aligned_cols=194 Identities=23% Similarity=0.392 Sum_probs=164.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.|.++|+-.--|+. ..+...++|.|++|-.+.|.||+|||||+|.+.|.|+.|...|...+.- +.+|
T Consensus 481 gI~lenIpvItP~~--~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~-----------~~~m 547 (728)
T KOG0064|consen 481 GIILENIPVITPAG--DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPR-----------PNNI 547 (728)
T ss_pred ceEEecCceeccCc--ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCC-----------Ccce
Confidence 48899988777653 3588999999999999999999999999999999999999999877653 3469
Q ss_pred EEEcCCCCCCcccHHHHHhcCC-------CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHH
Q 001041 463 GLVSQEPVLFTGSIKDNIAYGK-------DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1178)
Q Consensus 463 ~~v~Q~~~l~~~ti~~ni~~~~-------~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lAR 535 (1178)
-|+||.|..--||+||-|.++. ..++|.+++..++.++++..+ +-..|.|.... --.-||||+|||+++||
T Consensus 548 FYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~-qr~~g~da~~d-Wkd~LsgGekQR~~mAR 625 (728)
T KOG0064|consen 548 FYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHIL-QREGGWDAVRD-WKDVLSGGEKQRMGMAR 625 (728)
T ss_pred EeccCCCccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHH-HhccChhhhcc-HHhhccchHHHHHHHHH
Confidence 9999999988999999999864 246788899999999987654 44567776543 33469999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEE
Q 001041 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVI 593 (1178)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l 593 (1178)
..|++|+.-+|||+|||+-.+.|..+.++.++. |-+.|-||||++..+.-.+.+-.
T Consensus 626 m~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~--gi~llsithrpslwk~h~~ll~~ 681 (728)
T KOG0064|consen 626 MFYHRPKYALLDECTSAVSIDVEGKIFQAAKDA--GISLLSITHRPSLWKYHTHLLEF 681 (728)
T ss_pred HHhcCcchhhhhhhhcccccchHHHHHHHHHhc--CceEEEeecCccHHHHHHHHHhc
Confidence 999999999999999999999999999998875 68999999999988764444444
No 397
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=5.9e-29 Score=237.89 Aligned_cols=228 Identities=27% Similarity=0.454 Sum_probs=178.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECC-----eecCCCCHHH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG-----INLKEFQLQW 457 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g-----~~~~~~~~~~ 457 (1178)
-++++++|..|... .--+|+||++.|||..+|||+||||||||+++|.+-+.|+.|+|.++- .|+-.++..+
T Consensus 6 LL~V~~lsk~Yg~~---~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEae 82 (258)
T COG4107 6 LLSVSGLSKLYGPG---KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82 (258)
T ss_pred ceeehhhhhhhCCC---cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHH
Confidence 47788999999754 367999999999999999999999999999999999999999998854 2333344333
Q ss_pred ----HhcceEEEcCCCC--C-C----cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChH
Q 001041 458 ----IRKKIGLVSQEPV--L-F----TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1178)
Q Consensus 458 ----~r~~i~~v~Q~~~--l-~----~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgG 526 (1178)
+|..-++|.|+|- + . .+.|-|-+. .-..-.+..++. ...+|++...- +.+.+.+....+|||
T Consensus 83 RR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlm-a~G~RHYG~iR~-----~a~~WL~~VEI-~~~RiDD~PrtFSGG 155 (258)
T COG4107 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLM-AIGARHYGNIRA-----EAQDWLEEVEI-DLDRIDDLPRTFSGG 155 (258)
T ss_pred HHHHhhhccceeecCccccceeeeccCCccchhHH-hhhhhhhhhHHH-----HHHHHHHhccc-CcccccCcccccchH
Confidence 3456899999993 1 1 123333322 111111112221 12355555432 345677888999999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecC
Q 001041 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603 (1178)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 603 (1178)
++||+-|||-|...|+++++||||.+||......+.+.++.+.. +-.+++|||++...+. +||.+||++|+++|.|-
T Consensus 156 MqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GL 235 (258)
T COG4107 156 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGL 235 (258)
T ss_pred HHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecccc
Confidence 99999999999999999999999999999999999999888753 5689999999999875 99999999999999999
Q ss_pred hhHHhcCCCchHHHHHH
Q 001041 604 HSKLVEDPEGAYSQLIR 620 (1178)
Q Consensus 604 ~~~l~~~~~~~~~~~~~ 620 (1178)
.+..+.++...|.++.-
T Consensus 236 TDrvLDDP~hPYTQLLV 252 (258)
T COG4107 236 TDRVLDDPHHPYTQLLV 252 (258)
T ss_pred ccccccCCCCchHHHHH
Confidence 99999998889988753
No 398
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=7.2e-29 Score=255.60 Aligned_cols=202 Identities=25% Similarity=0.391 Sum_probs=158.9
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEc-CC---CCCCc-
Q 001041 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVS-QE---PVLFT- 473 (1178)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~-Q~---~~l~~- 473 (1178)
-++.+||||+|++|++++.+|+||+||||++|+|.|.+.|++|.|.++|.+.-+-..+.+|+ +++|. |. -|-.+
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~-~~~v~gqk~ql~Wdlp~ 115 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRS-IGLVMGQKLQLWWDLPA 115 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHH-HHHHhhhhheeeeechh
Confidence 35899999999999999999999999999999999999999999999998776655555554 44432 22 23222
Q ss_pred -ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCC
Q 001041 474 -GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 552 (1178)
Q Consensus 474 -~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~ 552 (1178)
.|.+=|=... +..+.++.+- ...+.+ -| +++..+......||-|||-|.-||.||+++|+||+|||||=+
T Consensus 116 ~ds~~v~~~Iy--~Ipd~~F~~r--~~~l~e---iL--dl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvg 186 (325)
T COG4586 116 LDSLEVLKLIY--EIPDDEFAER--LDFLTE---IL--DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVG 186 (325)
T ss_pred hhhHHHHHHHH--hCCHHHHHHH--HHHHHH---Hh--cchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccC
Confidence 2322222211 2344444432 222223 22 566777777789999999999999999999999999999999
Q ss_pred CCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 553 LDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 553 lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
||..+...+.+.+++.. .++||++.||.++-+.. ||||++|+.|+++..|+.++|.++
T Consensus 187 LDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~ 247 (325)
T COG4586 187 LDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQ 247 (325)
T ss_pred cchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHH
Confidence 99999999999998764 47899999999998865 999999999999999999988764
No 399
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=1.5e-28 Score=299.63 Aligned_cols=220 Identities=31% Similarity=0.487 Sum_probs=179.2
Q ss_pred ccEEEEeEEEECCCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC---CCCcEEECCeecCCCCHH
Q 001041 382 GDIELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP---QAGEVLIDGINLKEFQLQ 456 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~---~~G~i~i~g~~~~~~~~~ 456 (1178)
-.+.++|++..-++.. .+.+|+|||.+++|||+.||.||||||||||+++|.|-.+. .+|+|.+||+ ..+.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~---~~~~~ 100 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGR---PRDSR 100 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCc---cCchh
Confidence 3578999998876542 46799999999999999999999999999999999998874 6899999993 45566
Q ss_pred HHhcceEEEcCCCCCC-cccHHHHHhcCC----CC-CCHHHHHHHHHHhcHHHHHHhCCCC--ccchhcCC-CCCCChHH
Q 001041 457 WIRKKIGLVSQEPVLF-TGSIKDNIAYGK----DD-ATTEEIRVATELANAAKFIDKLPQG--IDTLVGEH-GTQLSGGQ 527 (1178)
Q Consensus 457 ~~r~~i~~v~Q~~~l~-~~ti~~ni~~~~----~~-~~~~~~~~~~~~~~~~~~i~~~~~g--~~t~~~~~-g~~lSgGq 527 (1178)
.+++..|||+||..++ +-||+|++.|.. |. .+.++..+ ..++.+.+|..- -||.+|.. ...+||||
T Consensus 101 ~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~-----~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGE 175 (613)
T KOG0061|consen 101 SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRE-----RVEEVISELGLEKCADTLIGNPGIRGLSGGE 175 (613)
T ss_pred hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHH-----HHHHHHHHcCChhhccceecCCCCCccccch
Confidence 7888999999999987 579999998742 21 12222221 112233333211 45777643 35799999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcch--hhccCEEEEEeCCEEEEecCh
Q 001041 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLST--VRNADMIAVIHRGKIVEKGTH 604 (1178)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~--~~~~d~i~~l~~G~i~~~g~~ 604 (1178)
|+|+++|.-++.||.||+||||||+||+.+...+.+.++++. +|||||+.=|+++. ....|++++|.+|++++.|++
T Consensus 176 rkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~ 255 (613)
T KOG0061|consen 176 RKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSP 255 (613)
T ss_pred hhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCH
Confidence 999999999999999999999999999999999999998875 58999999999975 466999999999999999999
Q ss_pred hHHhc
Q 001041 605 SKLVE 609 (1178)
Q Consensus 605 ~~l~~ 609 (1178)
+++.+
T Consensus 256 ~~~~~ 260 (613)
T KOG0061|consen 256 RELLE 260 (613)
T ss_pred HHHHH
Confidence 88753
No 400
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.95 E-value=6.5e-29 Score=247.88 Aligned_cols=136 Identities=38% Similarity=0.727 Sum_probs=121.6
Q ss_pred ccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcc-cHHHHH
Q 001041 402 FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNI 480 (1178)
Q Consensus 402 l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-ti~~ni 480 (1178)
|+|+||++++|++++|+|++|||||||+++|+|.++|.+|+|.++|.++...+....|+.++|++|+++++.+ |+++|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 6899999999999999999999999999999999999999999999999998889999999999999998865 59999
Q ss_pred hcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC
Q 001041 481 AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 551 (1178)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts 551 (1178)
..+++++++++..++.+ ..++.++.+...||||||||++||||++++|+++||||||+
T Consensus 80 ------~~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 ------ESDERIEEVLKKLGLED-------LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp ------HHHHHHHHHHHHTTHGG-------GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ------ccccccccccccccccc-------ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 23456666666665433 34677888889999999999999999999999999999996
No 401
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.95 E-value=2.2e-27 Score=280.49 Aligned_cols=203 Identities=29% Similarity=0.391 Sum_probs=171.1
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcc
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1178)
..++++|+++.|++. +++++++||.|.+|+++||+||||+|||||+++|.|...|.+|+|.++- .-+
T Consensus 320 ~vl~~~~~~~~y~~~--~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~-----------~v~ 386 (530)
T COG0488 320 LVLEFENVSKGYDGG--RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGE-----------TVK 386 (530)
T ss_pred eeEEEeccccccCCC--ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCC-----------ceE
Confidence 458999999999643 5799999999999999999999999999999999999999999998864 127
Q ss_pred eEEEcCCC-CC-CcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 462 IGLVSQEP-VL-FTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 462 i~~v~Q~~-~l-~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
+||.+|+- .+ -+.|+-|++.-..|...+.+++..+...++...- +......||||||.|+.||+.++.
T Consensus 387 igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~----------~~~~v~~LSGGEk~Rl~La~ll~~ 456 (530)
T COG0488 387 IGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGED----------QEKPVGVLSGGEKARLLLAKLLLQ 456 (530)
T ss_pred EEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHH----------HhCchhhcCHhHHHHHHHHHHhcc
Confidence 99999998 33 3558999998666555567777776665443221 234456799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEEEe-cChhHHhcC
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEK-GTHSKLVED 610 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~-g~~~~l~~~ 610 (1178)
+|.+|||||||.+||.++...+.++|..+ ..|+|+|||+.+++.. |++|+.+++ ++.+. |++++..+.
T Consensus 457 ~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~ 526 (530)
T COG0488 457 PPNLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLEQ 526 (530)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHHh
Confidence 99999999999999999999999999886 4699999999999987 999999998 77765 888877653
No 402
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.95 E-value=3.6e-27 Score=254.77 Aligned_cols=193 Identities=24% Similarity=0.339 Sum_probs=127.8
Q ss_pred CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEEC-C------eecCCC---CHHHHhc-ceEEEc
Q 001041 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID-G------INLKEF---QLQWIRK-KIGLVS 466 (1178)
Q Consensus 398 ~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~-g------~~~~~~---~~~~~r~-~i~~v~ 466 (1178)
+.++|+++||++++||+++|+|+||||||||+..+.- .+|++.+. + ..+..+ +...++. ..++..
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAI 82 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH----HHHHHHHhhcccchhhhhhcccCccccccccCCCceEEe
Confidence 3469999999999999999999999999999632221 12433211 0 000000 0111221 234444
Q ss_pred CCCCC-Cc-----ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccc-hhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 467 QEPVL-FT-----GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 467 Q~~~l-~~-----~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t-~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
|++.. ++ +++.+...+.......+..... .+.++.+ |+.. .......+||||||||++||||++.
T Consensus 83 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~laral~~ 154 (226)
T cd03270 83 DQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRER------LGFLVDV--GLGYLTLSRSAPTLSGGEAQRIRLATQIGS 154 (226)
T ss_pred cCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHH------HHHHHHC--CCCcccccCccCcCCHHHHHHHHHHHHHHh
Confidence 54431 11 1222222110000011111111 1233333 4443 3567788999999999999999999
Q ss_pred CC--CEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhccCEEEEE------eCCEEEEec
Q 001041 540 DP--RILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVI------HRGKIVEKG 602 (1178)
Q Consensus 540 ~~--~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l------~~G~i~~~g 602 (1178)
+| +++||||||++||+.+...+.+.++++. ++.|+|+|||+++.+..||+|++| ++|+|+++|
T Consensus 155 ~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 155 GLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred CCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 98 5999999999999999999999998764 478999999999998889999999 999999976
No 403
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.95 E-value=9.6e-24 Score=246.86 Aligned_cols=391 Identities=12% Similarity=0.129 Sum_probs=300.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChh------hHHHHHhhhHHHHHHHH
Q 001041 764 ALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSG------AIGARLSADAASVRALV 837 (1178)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G------~i~~r~s~D~~~i~~~l 837 (1178)
+.+|..++.+..++...+.|+......++-.-|-+.+.++-+...-.|+. ...| ..=.|+..|+...-+.-
T Consensus 89 l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l---~~~~~~~~~dNpDQRi~eDi~~~t~~t 165 (604)
T COG4178 89 LQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRL---AQAGGIGLIDNPDQRIQEDIRNFTETT 165 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHH---HhcccccCCCChHHhHHHHHHHHHhhH
Confidence 44455555556666667778887888888888888888888887754544 2333 23479999999988887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 001041 838 GDALARIVQNISTAAAGLIIAF---------------TASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEAS 902 (1178)
Q Consensus 838 ~~~l~~~~~~~~~~i~~ii~~~---------------~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 902 (1178)
......++.++++++...+++. -+...+.+++++.+++..++...+.|.+.+.+-+.++..++..
T Consensus 166 ~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR 245 (604)
T COG4178 166 LDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFR 245 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHH
Confidence 7777888888777776666665 3455666777777888888888899999999999999999998
Q ss_pred HHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHH
Q 001041 903 QVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDV 982 (1178)
Q Consensus 903 ~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l 982 (1178)
..+.-.-++...|-.|+.|+.+.++.+...+...+...+.......+..+......+..++-+..++-....|.+++|++
T Consensus 246 ~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~l 325 (604)
T COG4178 246 YSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGL 325 (604)
T ss_pred HHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHH
Confidence 88888899999999999999999988888777776655554444444444444444444444455666678899999999
Q ss_pred HHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCC--CCCCCCCCC--Ccc---cCccccEEEeeeEEeCCCC
Q 001041 983 FKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRES--KIDPSDESG--TIL---EDVKGEIELHHVSFKYPSR 1055 (1178)
Q Consensus 983 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~--~~~~~~~~~--~~~---~~~~g~I~f~nVsf~Y~~~ 1055 (1178)
+....+.......++......+.+..-.+...|+.++.+.-. +.++..... ... ...+..|+|+|++..-|++
T Consensus 326 mqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~ 405 (604)
T COG4178 326 MQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG 405 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCC
Confidence 999999999999999999888999999999999988753221 000000000 000 0014679999999999854
Q ss_pred CCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccccccccccccccH
Q 001041 1056 PDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTI 1135 (1178)
Q Consensus 1056 ~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTI 1135 (1178)
.+.|+++||.|+|||.+-|.|+||||||||+++|.|+|+..+|+|.+=.. +.+-++||.|++=.||+
T Consensus 406 --~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~-----------~~~lflpQ~PY~p~GtL 472 (604)
T COG4178 406 --QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPAD-----------SALLFLPQRPYLPQGTL 472 (604)
T ss_pred --CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCC-----------CceEEecCCCCCCCccH
Confidence 36899999999999999999999999999999999999999999876411 23589999999999999
Q ss_pred HHHHhcCCCC-CCCHHHHHHHHHHcCchHHHhhccc
Q 001041 1136 RANIAYGKGG-DATEAEIQAASEMANAHKFICSLQQ 1170 (1178)
Q Consensus 1136 reNI~~g~~~-~asdeei~~Al~~A~~~dfI~~LP~ 1170 (1178)
||=|.|-..+ +.+|+|+.+++.++++.+++.+|.+
T Consensus 473 re~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~ 508 (604)
T COG4178 473 REALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDE 508 (604)
T ss_pred HHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhc
Confidence 9999995433 3899999999999999999999743
No 404
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.6e-27 Score=231.04 Aligned_cols=188 Identities=22% Similarity=0.377 Sum_probs=155.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
++.+|++..- .+..++.++||++.+||.+-|.||||||||||+++|.|+++|.+|+|.++|.++...... .+...-
T Consensus 3 L~a~~L~~~R---~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~-~~~~l~ 78 (209)
T COG4133 3 LEAENLSCER---GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRES-YHQALL 78 (209)
T ss_pred chhhhhhhcc---CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhh-HHHHHH
Confidence 3456666554 345799999999999999999999999999999999999999999999999888765432 356788
Q ss_pred EEcCCCCCC-cccHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 464 LVSQEPVLF-TGSIKDNIAYGKDD---ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 464 ~v~Q~~~l~-~~ti~~ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
|+.-.|-+= .-|+.||+.|-... .+.+.++++++.+++... +.+| ..+||.|||.|+||||-+++
T Consensus 79 yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~-~dlp----------~~~LSAGQqRRvAlArL~ls 147 (209)
T COG4133 79 YLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGL-EDLP----------VGQLSAGQQRRVALARLWLS 147 (209)
T ss_pred HhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccc-cccc----------hhhcchhHHHHHHHHHHHcC
Confidence 888888765 57999999986442 346889999998887653 3333 35799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN 586 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~ 586 (1178)
.+++.|||||+++||.+....+-..+.... ++.-||+.||..-.+..
T Consensus 148 ~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~~ 195 (209)
T COG4133 148 PAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIAS 195 (209)
T ss_pred CCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCCc
Confidence 999999999999999999999988887665 56788889998765543
No 405
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.94 E-value=7.2e-27 Score=253.91 Aligned_cols=193 Identities=25% Similarity=0.408 Sum_probs=139.8
Q ss_pred cccceeEEEeCCCEEEEEcCCCCcHHHHHHHHh-----ccC-----CCCCC-----------cEEECCeecCCCC---H-
Q 001041 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIE-----RFY-----DPQAG-----------EVLIDGINLKEFQ---L- 455 (1178)
Q Consensus 401 ~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~-----g~~-----~~~~G-----------~i~i~g~~~~~~~---~- 455 (1178)
.|+|++++||.|++++|+|+||||||||++.++ +.+ .|..+ -|.+|..++..-+ +
T Consensus 10 nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~ 89 (261)
T cd03271 10 NLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPA 89 (261)
T ss_pred cCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHH
Confidence 699999999999999999999999999998663 111 12222 2455555543211 0
Q ss_pred ------HHHhc----------------ceEEEcCCCC-CCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCc
Q 001041 456 ------QWIRK----------------KIGLVSQEPV-LFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGI 512 (1178)
Q Consensus 456 ------~~~r~----------------~i~~v~Q~~~-l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 512 (1178)
+.+|+ .+.|..++.. +.+.|+.||+.|...... +.+ ..+.++.+ |+
T Consensus 90 ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~---~~~------~~~~L~~v--gL 158 (261)
T cd03271 90 TYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPK---IAR------KLQTLCDV--GL 158 (261)
T ss_pred HHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhh---HHH------HHHHHHHc--CC
Confidence 11111 1334444442 235567777665422111 111 12233333 66
Q ss_pred cc-hhcCCCCCCChHHHHHHHHHHHhccC---CCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhcc
Q 001041 513 DT-LVGEHGTQLSGGQKQRIAIARAILKD---PRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNA 587 (1178)
Q Consensus 513 ~t-~~~~~g~~lSgGqkqri~lARal~~~---~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~ 587 (1178)
+. ..++...+||||||||++|||||.++ |+++||||||++||++....+.+.++++. ++.|+|+|+|+++.+..|
T Consensus 159 ~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~a 238 (261)
T cd03271 159 GYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCA 238 (261)
T ss_pred chhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhC
Confidence 65 46888899999999999999999996 79999999999999999999999998765 478999999999999999
Q ss_pred CEEEEE------eCCEEEEecCh
Q 001041 588 DMIAVI------HRGKIVEKGTH 604 (1178)
Q Consensus 588 d~i~~l------~~G~i~~~g~~ 604 (1178)
|+|++| ++|+|+++|++
T Consensus 239 D~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 239 DWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred CEEEEecCCcCCCCCEEEEeCCC
Confidence 999999 89999999975
No 406
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.94 E-value=5.2e-26 Score=295.09 Aligned_cols=210 Identities=27% Similarity=0.375 Sum_probs=149.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHH---------HHhccCCCCC----Cc----EEE
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVIS---------LIERFYDPQA----GE----VLI 445 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~---------~l~g~~~~~~----G~----i~i 445 (1178)
.++++|++. ..|+|+|++|++||+++|+|+||||||||++ .|.|...+.. +. |.|
T Consensus 600 ~L~l~~~~~--------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~i 671 (1809)
T PRK00635 600 TLTLSKATK--------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHI 671 (1809)
T ss_pred eEEEecccc--------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEe
Confidence 478887751 2699999999999999999999999999999 4555432211 11 344
Q ss_pred CCeecCCC----CH------HHHh---------c-----ceEEEcCC------------------CC-------------
Q 001041 446 DGINLKEF----QL------QWIR---------K-----KIGLVSQE------------------PV------------- 470 (1178)
Q Consensus 446 ~g~~~~~~----~~------~~~r---------~-----~i~~v~Q~------------------~~------------- 470 (1178)
|-.++..- +. +++| + ...+.+|. |.
T Consensus 672 dQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy 751 (1809)
T PRK00635 672 TRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRF 751 (1809)
T ss_pred cCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCccc
Confidence 44433221 01 1333 1 12223332 10
Q ss_pred -------CC-cccHHHHHhcCCCCC-----CHHHHHHHHHHhcHHHHHHhCCCCccch-hcCCCCCCChHHHHHHHHHHH
Q 001041 471 -------LF-TGSIKDNIAYGKDDA-----TTEEIRVATELANAAKFIDKLPQGIDTL-VGEHGTQLSGGQKQRIAIARA 536 (1178)
Q Consensus 471 -------l~-~~ti~~ni~~~~~~~-----~~~~~~~~~~~~~~~~~i~~~~~g~~t~-~~~~g~~lSgGqkqri~lARa 536 (1178)
.+ .-||.||+.++..++ +.+++.+.+ +.++.+ |++.. .++...+||||||||++||||
T Consensus 752 ~~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l------~~L~~v--GL~~l~l~q~~~tLSGGE~QRV~LAra 823 (1809)
T PRK00635 752 LPQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI------HALCSL--GLDYLPLGRPLSSLSGGEIQRLKLAYE 823 (1809)
T ss_pred CHHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH------HHHHHc--CCcchhhcCccccCCHHHHHHHHHHHH
Confidence 12 237888888763211 112222222 123333 67665 688889999999999999999
Q ss_pred hc---cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhccCEEEEEe------CCEEEEecChhH
Q 001041 537 IL---KDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVIH------RGKIVEKGTHSK 606 (1178)
Q Consensus 537 l~---~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l~------~G~i~~~g~~~~ 606 (1178)
|+ .+|++|||||||++||+.+.+.+.+.++++. ++.|+|+|+|+++.+..||+|++|+ +|+++..|++++
T Consensus 824 L~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpee 903 (1809)
T PRK00635 824 LLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEE 903 (1809)
T ss_pred HhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHH
Confidence 98 5999999999999999999999999998875 4789999999999998899999996 789999999887
Q ss_pred Hh
Q 001041 607 LV 608 (1178)
Q Consensus 607 l~ 608 (1178)
+.
T Consensus 904 l~ 905 (1809)
T PRK00635 904 LI 905 (1809)
T ss_pred HH
Confidence 64
No 407
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.94 E-value=1.5e-26 Score=243.78 Aligned_cols=164 Identities=23% Similarity=0.297 Sum_probs=130.7
Q ss_pred cceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCC---------CcEEECCeecCCCCHHHHhcceEEEcCCCCCCc
Q 001041 403 SGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA---------GEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT 473 (1178)
Q Consensus 403 ~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~---------G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~ 473 (1178)
+++++++++| +++|+||||||||||+++|.|++++.. |++.++|.+.... ..+.+|+|++|+|..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~vfq~~~~~- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP---ANFAEVTLTFDNSDGR- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCC---CceEEEEEEEEcCCCc-
Confidence 6789999999 999999999999999999999986653 4677777766432 2357899999999877
Q ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhc----cCCCEEEEeCC
Q 001041 474 GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL----KDPRILLLDEA 549 (1178)
Q Consensus 474 ~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~----~~~~illlDe~ 549 (1178)
|+.. ..+++.++++. ++- .......||||||||++|||++. ++|++++||||
T Consensus 89 --------~~~~--~~~~~~~~l~~----------~~~----~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP 144 (197)
T cd03278 89 --------YSII--SQGDVSEIIEA----------PGK----KVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEV 144 (197)
T ss_pred --------eeEE--ehhhHHHHHhC----------CCc----cccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCC
Confidence 2211 12333333322 211 23445679999999999999986 57799999999
Q ss_pred CCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeC
Q 001041 550 TSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHR 595 (1178)
Q Consensus 550 ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~ 595 (1178)
|++||+.....+.+.++++.++.|+|+|||+++.+..||+++.+..
T Consensus 145 ~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 145 DAALDDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred cccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcceEEEEEe
Confidence 9999999999999999988778899999999999888999999863
No 408
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.94 E-value=1.5e-26 Score=255.84 Aligned_cols=132 Identities=27% Similarity=0.452 Sum_probs=122.5
Q ss_pred ccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHh
Q 001041 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1178)
Q Consensus 1041 g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~ 1120 (1178)
|+|+|+||+++|++. +.++|+||||+|++||++||||+||||||||+++|+|+++ .+|+|+|||+|+.+++..++|++
T Consensus 1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 579999999999742 3469999999999999999999999999999999999998 78999999999999999999999
Q ss_pred ccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhccccccccc
Q 001041 1121 MGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1178)
Q Consensus 1121 IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v 1176 (1178)
|++|||+|.+|++|+++|+++.. ..++++++++++.+++++++.++|+||||.+
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~~--~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~ 132 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPYG--KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVL 132 (275)
T ss_pred EEEECCCcccchhhHHHHhhhcc--CCCHHHHHHHHHHcCCHHHHHhCccccccee
Confidence 99999999999999999997431 3678999999999999999999999999987
No 409
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=2.9e-25 Score=247.37 Aligned_cols=196 Identities=28% Similarity=0.348 Sum_probs=134.5
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcc
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1178)
.+|...+.+.+|++ +.+|++-++++..|..+|+|||||+|||||+++|.. |.|.+-.++ +++|.-
T Consensus 79 ~Di~~~~fdLa~G~---k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~ve------qE~~g~ 143 (582)
T KOG0062|consen 79 KDIHIDNFDLAYGG---KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVE------QEVRGD 143 (582)
T ss_pred cceeeeeeeeeecc---hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCch------hheecc
Confidence 46889999999974 469999999999999999999999999999999997 444322211 000000
Q ss_pred eEEEcCCCCCCcccHHHHHhcCCCCC----CHHHHHH-HHHHhcHHHHHHhCCCCccchhcCC-CCCCChHHHHHHHHHH
Q 001041 462 IGLVSQEPVLFTGSIKDNIAYGKDDA----TTEEIRV-ATELANAAKFIDKLPQGIDTLVGEH-GTQLSGGQKQRIAIAR 535 (1178)
Q Consensus 462 i~~v~Q~~~l~~~ti~~ni~~~~~~~----~~~~~~~-~~~~~~~~~~i~~~~~g~~t~~~~~-g~~lSgGqkqri~lAR 535 (1178)
-....| ..+-.++-|.-+..-.+.. +.+++.. ++.-. |...+.-.+ -..||||=|=|++|||
T Consensus 144 ~t~~~~-~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~gl-----------GFt~emq~~pt~slSGGWrMrlaLAR 211 (582)
T KOG0062|consen 144 DTEALQ-SVLESDTERLDFLAEEKELLAGLTLEEIYDKILAGL-----------GFTPEMQLQPTKSLSGGWRMRLALAR 211 (582)
T ss_pred chHHHh-hhhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhC-----------CCCHHHHhccccccCcchhhHHHHHH
Confidence 000001 0223344444443211100 1122222 22222 333333332 2579999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEE-EecChhH
Q 001041 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIV-EKGTHSK 606 (1178)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~-~~g~~~~ 606 (1178)
|+..+||||||||||..||..+..++.+.+.++ ..|+|+|+|+-+++.. |..|+.+++-++- +.|++++
T Consensus 212 Alf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~--~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~ 282 (582)
T KOG0062|consen 212 ALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW--KITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQ 282 (582)
T ss_pred HHhcCCCEEeecCCcccchhHHHHHHHHHHhhC--CceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHH
Confidence 999999999999999999999999999998875 3899999999999986 8888898875553 3444433
No 410
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=2.4e-25 Score=212.77 Aligned_cols=202 Identities=28% Similarity=0.373 Sum_probs=143.2
Q ss_pred EEEEeEEEECC----CCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEEC--C--eecCCCCH
Q 001041 384 IELRDVYFSYP----ARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID--G--INLKEFQL 455 (1178)
Q Consensus 384 i~~~~~~~~y~----~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~--g--~~~~~~~~ 455 (1178)
+..+|++.++- +.-.-|+++|+||+++.||++++-||||+|||||+++|-+-|.|++|+|.+. | +|+....+
T Consensus 5 l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~p 84 (235)
T COG4778 5 LNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEP 84 (235)
T ss_pred eeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccCh
Confidence 55667765552 1112479999999999999999999999999999999999999999999884 2 34444444
Q ss_pred HH----HhcceEEEcCCCC-CCccc----HHHHHh-cCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCCh
Q 001041 456 QW----IRKKIGLVSQEPV-LFTGS----IKDNIA-YGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSG 525 (1178)
Q Consensus 456 ~~----~r~~i~~v~Q~~~-l~~~t----i~~ni~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSg 525 (1178)
.. .|+.||||+|--- +-.-+ +.|-+. .|-+ .+....++. .+... -++|..+... ...++||
T Consensus 85 r~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~--~~~a~~~a~---~Ll~r-LnlperLW~L---aPaTFSG 155 (235)
T COG4778 85 REVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVP--REVARAKAA---DLLTR-LNLPERLWSL---APATFSG 155 (235)
T ss_pred HHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCC--HHHHHHHHH---HHHHH-cCCCHHHhcC---CCcccCC
Confidence 32 3567999999532 11211 233222 1211 111111111 11111 1344444332 3478999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEe
Q 001041 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIH 594 (1178)
Q Consensus 526 Gqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~ 594 (1178)
|++||+.|||.+.-+-+||+|||||++||+.+.+.+.+.|.+.. +|+.+|=|=|+-+.=.. |||++-|.
T Consensus 156 GEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~ 226 (235)
T COG4778 156 GEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVS 226 (235)
T ss_pred chheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeecc
Confidence 99999999999999999999999999999999999999997654 67888889999776544 89988774
No 411
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.92 E-value=8.4e-25 Score=278.65 Aligned_cols=216 Identities=22% Similarity=0.417 Sum_probs=182.6
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCC-CHHHHhc
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF-QLQWIRK 460 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~-~~~~~r~ 460 (1178)
..+..+|++..|+.+.. +.+++|+.+++||+.|+-|+|||||||+++++.|+..|++|++.++|.++..- +....++
T Consensus 563 ~~~~~~~L~k~y~~~~~--Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~ 640 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG--AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRK 640 (885)
T ss_pred ceEEEcceeeeecchhh--hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhh
Confidence 35888999999976532 89999999999999999999999999999999999999999999999999765 4456899
Q ss_pred ceEEEcCCCCCC-cccHHHHHhcCC-----CCCC-HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHH
Q 001041 461 KIGLVSQEPVLF-TGSIKDNIAYGK-----DDAT-TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1178)
Q Consensus 461 ~i~~v~Q~~~l~-~~ti~~ni~~~~-----~~~~-~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~l 533 (1178)
.+|||||+..++ .-|.||.+.+.. +..+ .+.++..++..++.+. ......++|||+|.|+++
T Consensus 641 ~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~-----------~~~~~~~ySgG~kRkLs~ 709 (885)
T KOG0059|consen 641 QLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPY-----------ANKQVRTYSGGNKRRLSF 709 (885)
T ss_pred hcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhh-----------hccchhhCCCcchhhHHH
Confidence 999999998887 579999998732 2111 1223444444443332 222346899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCC-eEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNR-TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~-t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
|-|++.+|++++|||||+++||.+++.+.+.|.+..++. .+|+.||.++..+. |||+.+|.+|++...|++++|..+
T Consensus 710 aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsr 788 (885)
T KOG0059|consen 710 AIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSR 788 (885)
T ss_pred HHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhh
Confidence 999999999999999999999999999999999988754 99999999999986 999999999999999999999754
No 412
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.92 E-value=6.4e-22 Score=220.91 Aligned_cols=273 Identities=21% Similarity=0.342 Sum_probs=234.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 722 LAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCF 801 (1178)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~ 801 (1178)
++++++.++.++..+..+++++.+++...............+...++++.++...+.....+...+.+.++..++|.+++
T Consensus 2 ~l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (275)
T PF00664_consen 2 FLAILLSILSGLLSLLFPLLLGQIIDSLSSGNSDNNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRLF 81 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666777777778889999998754332211111122222233334444455555566678999999999999999
Q ss_pred HHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 001041 802 EKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGY 881 (1178)
Q Consensus 802 ~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l~l~~l~~~pl~~~~~~ 881 (1178)
+|+++.|.+||+ ++++|++++|+++|++.+++.+.+.+..++..+..+++.+++++.++|+++++++++.|+..++..
T Consensus 82 ~~~~~~~~~~~~--~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~~ 159 (275)
T PF00664_consen 82 EKLLRLPYSYFD--KNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFLISF 159 (275)
T ss_dssp HHHHHSHHHHHH--HS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhh--hhcccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHhhhh
Confidence 999999999999 599999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHHHhhHHHHHHHHHHHHH
Q 001041 882 TQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFY 961 (1178)
Q Consensus 882 ~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 961 (1178)
...++.++..++.++..++..+.+.|.++|+++||+||.|+++.++|++..++..+...+.........+....+..+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (275)
T PF00664_consen 160 IFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLSI 239 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999989
Q ss_pred HHHHHHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHH
Q 001041 962 AASFYAGARL-VEDGKATFSDVFKVFFSLTMTAIGI 996 (1178)
Q Consensus 962 ~~~~~~g~~l-~~~g~~t~g~l~~~~~~~~~~~~~l 996 (1178)
++++++|+++ +.+|.+++|+++++..+...+..|+
T Consensus 240 ~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 240 VLILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 9999999999 9999999999999999998888775
No 413
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.91 E-value=1.1e-24 Score=233.69 Aligned_cols=192 Identities=19% Similarity=0.192 Sum_probs=138.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEe-CCCEEEEEcCCCCcHHHHHHHHhc-cCCCCCCcEEECCeecCCCCHHHHhc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISIS-SGTTAALVGQSGSGKSTVISLIER-FYDPQAGEVLIDGINLKEFQLQWIRK 460 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~-~g~~~~ivG~~GsGKStl~~~l~g-~~~~~~G~i~i~g~~~~~~~~~~~r~ 460 (1178)
.|+++|+. +|.++ ++++|+.. +|++++|+||||||||||+++|.+ ++.+..+....+ .....+.....+.
T Consensus 5 ~i~l~nf~-~y~~~------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~ 76 (213)
T cd03279 5 KLELKNFG-PFREE------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTA 76 (213)
T ss_pred EEEEECCc-CcCCc------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccE
Confidence 47888888 66432 46677644 589999999999999999999995 555554544433 1112223334466
Q ss_pred ceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCC-CccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 461 KIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQ-GIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 461 ~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
.|++++|++...-...| ++ ..+.++..+... ++. ++++.+...+.+||||||||++||||++.
T Consensus 77 ~v~~~f~~~~~~~~~~r----~~--gl~~~~~~~~~~----------l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~ 140 (213)
T cd03279 77 EVSFTFQLGGKKYRVER----SR--GLDYDQFTRIVL----------LPQGEFDRFLARPVSTLSGGETFLASLSLALAL 140 (213)
T ss_pred EEEEEEEECCeEEEEEE----ec--CCCHHHHHHhhh----------hhhcchHHHhcCCccccCHHHHHHHHHHHHHHh
Confidence 79999999843222222 11 233333332210 112 35666677888999999999999999974
Q ss_pred ----------CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc-CCeEEEEecCcchhhc-cCEEEEEeCCEE
Q 001041 540 ----------DPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKI 598 (1178)
Q Consensus 540 ----------~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i 598 (1178)
+|+++||||||++||+.+...+.+.++++.+ ++|+|+|||+++.+.. +|+++++++|.+
T Consensus 141 ~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 141 SEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred HHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 6789999999999999999999999988765 7899999999998866 899999998853
No 414
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.91 E-value=3.9e-25 Score=212.19 Aligned_cols=208 Identities=25% Similarity=0.402 Sum_probs=171.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
+.++||+..- -|-.+|..+..||.+-+|||+|||||||+..+.|+. |-+|+|.++|.++.....+++.++=+
T Consensus 4 ~qln~v~~~t-------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRA 75 (248)
T COG4138 4 MQLNDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRA 75 (248)
T ss_pred eeeccccccc-------cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHH
Confidence 4566665432 356788899999999999999999999999999987 67899999999999999999988888
Q ss_pred EEcCCC-CCCcccHHHHHhcCCCCCCH-HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc--
Q 001041 464 LVSQEP-VLFTGSIKDNIAYGKDDATT-EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK-- 539 (1178)
Q Consensus 464 ~v~Q~~-~l~~~ti~~ni~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~-- 539 (1178)
|..|+. ..|...|..-+.+..|..+. +++..+|++- +++..+++.-..||||+-||+-||-.+++
T Consensus 76 YLsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L-----------~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~ 144 (248)
T COG4138 76 YLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGAL-----------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQIT 144 (248)
T ss_pred HHhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhh-----------cccchhhhhhhhcCcccceeeEEeEEEEEec
Confidence 988865 57888899988887774111 2222333222 55666777788999999999999988876
Q ss_pred -----CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcc-hhhccCEEEEEeCCEEEEecChhHHhcC
Q 001041 540 -----DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLS-TVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 540 -----~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~-~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
..++||+|||.++||...+..+...+..++ +|.++|+..|+++ ++++||++..+..|++..+|..+|.+..
T Consensus 145 Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 145 PDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222 (248)
T ss_pred CCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence 357999999999999998888887777765 5899999999997 6899999999999999999999988754
No 415
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.91 E-value=1.7e-24 Score=238.21 Aligned_cols=191 Identities=25% Similarity=0.340 Sum_probs=129.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC----------------CCCCC------
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY----------------DPQAG------ 441 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~----------------~~~~G------ 441 (1178)
|+++|.. +|. +..++.+++ |++++|+||||||||||+++|.+.+ .+.+|
T Consensus 4 i~~~nfk-sy~---~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~ 74 (243)
T cd03272 4 VIIQGFK-SYK---DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSA 74 (243)
T ss_pred EEEeCcc-Ccc---cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceE
Confidence 5566532 353 234677776 8899999999999999999998443 33344
Q ss_pred --cEEECCeecC-CC--CHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHH--HhCCCC---
Q 001041 442 --EVLIDGINLK-EF--QLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFI--DKLPQG--- 511 (1178)
Q Consensus 442 --~i~i~g~~~~-~~--~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~g--- 511 (1178)
+|.+++.+-. .. +...++++++++||++.++.. ..+.++++..++..++...- ..+|+|
T Consensus 75 ~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~-----------~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~ 143 (243)
T cd03272 75 YVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKK-----------NVTKNDVMNLLESAGFSRSNPYYIVPQGKIN 143 (243)
T ss_pred EEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCe-----------EcCHHHHHHHHHHcCCCCCCCcEEEEcCchH
Confidence 4444442211 00 122345567777777665431 12334444444433322100 001111
Q ss_pred ----ccchhcCCCCCCChHHHHHHHHHHHhc----cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcch
Q 001041 512 ----IDTLVGEHGTQLSGGQKQRIAIARAIL----KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLST 583 (1178)
Q Consensus 512 ----~~t~~~~~g~~lSgGqkqri~lARal~----~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~ 583 (1178)
+.....+.+.+||||||||++||||++ ++|+++||||||++||+.+.+.+.+.++++.+++|+|+++|+.+.
T Consensus 144 ~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~~ 223 (243)
T cd03272 144 SLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPEL 223 (243)
T ss_pred HhhhccccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 122345677899999999999999996 468999999999999999999999999888777888889999887
Q ss_pred hhccCEEEEEe
Q 001041 584 VRNADMIAVIH 594 (1178)
Q Consensus 584 ~~~~d~i~~l~ 594 (1178)
...||++++|+
T Consensus 224 ~~~~d~i~~l~ 234 (243)
T cd03272 224 LEVADKFYGVK 234 (243)
T ss_pred HhhCCEEEEEE
Confidence 78899999996
No 416
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.90 E-value=2.3e-24 Score=241.59 Aligned_cols=197 Identities=29% Similarity=0.413 Sum_probs=164.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.|.++|++|.|++.+ .++++++|-|.+++.+++|||||||||||++++.|.+.|..|.|.-.-+ .++
T Consensus 389 vi~~~nv~F~y~~~~--~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H-----------~~~ 455 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDNP--MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH-----------NKL 455 (614)
T ss_pred eEEEeccccCCCCcc--hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc-----------ccc
Confidence 589999999997543 7999999999999999999999999999999999999999999966543 256
Q ss_pred EEEcCCC---CCCcccHHHHHhcCCCC-CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhc
Q 001041 463 GLVSQEP---VLFTGSIKDNIAYGKDD-ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1178)
Q Consensus 463 ~~v~Q~~---~l~~~ti~~ni~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~ 538 (1178)
++-.|+- .-...+.-++..--.++ -..+++...+..+++..+.+..| -.+||+|||.||+.||.++
T Consensus 456 ~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p----------~~~LS~Gqr~rVlFa~l~~ 525 (614)
T KOG0927|consen 456 PRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVP----------MSQLSDGQRRRVLFARLAV 525 (614)
T ss_pred hhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccc----------hhhcccccchhHHHHHHHh
Confidence 6666654 23567788887754453 45677888888888875544333 2589999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEEE-ecCh
Q 001041 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVE-KGTH 604 (1178)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~-~g~~ 604 (1178)
..|.+|+|||||++||.++...+.++|.+. ..++|+|+|+...+.+ +++|.+.++|.+.. .|.+
T Consensus 526 kqP~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 526 KQPHLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDI 591 (614)
T ss_pred cCCcEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceeecCccH
Confidence 999999999999999999999999999885 4689999999999987 89999999998874 4443
No 417
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.90 E-value=3.3e-24 Score=210.08 Aligned_cols=128 Identities=28% Similarity=0.441 Sum_probs=113.2
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCCh---HHHHH
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL---KWLRQ 1119 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l---~~LR~ 1119 (1178)
|+|+||+.+|+.+ +++|+||||+|++||.+=++|||||||||+++||++-..|++|+|.++|.|+..+.- --||+
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 8999999999864 569999999999999999999999999999999999999999999999999988864 45999
Q ss_pred hccccccccccc-cccHHHHHhcC-----CCCCCCHHHHHHHHHHcCchHHHhhccccc
Q 001041 1120 QMGLVSQEPVLF-NDTIRANIAYG-----KGGDATEAEIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1120 ~IsiV~Qdp~LF-~gTIreNI~~g-----~~~~asdeei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
+||+|+||--|. +-|+.||++|. .++..=.+++.++++.+++.+-...||..+
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~L 138 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQL 138 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcccc
Confidence 999999999765 77999999974 222223456789999999999999999865
No 418
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.90 E-value=4.6e-23 Score=236.78 Aligned_cols=212 Identities=23% Similarity=0.373 Sum_probs=167.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHH-HHhcc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ-WIRKK 461 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~-~~r~~ 461 (1178)
.++++|++.. ..++|+||++++||+++|.|-.|||+|=|+++|+|.-++.+|+|.+||+++.-.++. .++..
T Consensus 263 ~l~v~~l~~~-------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~G 335 (500)
T COG1129 263 VLEVRNLSGG-------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAG 335 (500)
T ss_pred EEEEecCCCC-------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcC
Confidence 3667776532 157899999999999999999999999999999998888999999999998877654 78889
Q ss_pred eEEEcCCCC----CCcccHHHHHhcCC-CCCCHH-HHHHHHHHhcHHHHHHhCCCCccch-hcCCCCCCChHHHHHHHHH
Q 001041 462 IGLVSQEPV----LFTGSIKDNIAYGK-DDATTE-EIRVATELANAAKFIDKLPQGIDTL-VGEHGTQLSGGQKQRIAIA 534 (1178)
Q Consensus 462 i~~v~Q~~~----l~~~ti~~ni~~~~-~~~~~~-~~~~~~~~~~~~~~i~~~~~g~~t~-~~~~g~~lSgGqkqri~lA 534 (1178)
|+|||.|-- +...+|++|+.+.. ...... -+....+.....++++.|. ..+. ......+||||-+|++.||
T Consensus 336 i~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~--Ik~~s~~~~v~~LSGGNQQKVvla 413 (500)
T COG1129 336 IAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLR--IKTPSPEQPIGTLSGGNQQKVVLA 413 (500)
T ss_pred CEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcC--cccCCccchhhcCCchhhhhHHHH
Confidence 999999863 44789999998761 111100 1222333333445555542 1111 1233457999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecC
Q 001041 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGT 603 (1178)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~ 603 (1178)
|.|+.+|+||||||||-++|.-+...|.+.|+++. +|+++|+||..+..+. .||||+||.+|+|+..=+
T Consensus 414 rwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~ 484 (500)
T COG1129 414 RWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELD 484 (500)
T ss_pred HHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999876 5799999999998775 699999999999986433
No 419
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.90 E-value=9.2e-24 Score=224.05 Aligned_cols=163 Identities=24% Similarity=0.294 Sum_probs=127.4
Q ss_pred eeEEEeCCCEEEEEcCCCCcHHHHHHHHh----ccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCC-----CCCc-c
Q 001041 405 FSISISSGTTAALVGQSGSGKSTVISLIE----RFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEP-----VLFT-G 474 (1178)
Q Consensus 405 i~l~i~~g~~~~ivG~~GsGKStl~~~l~----g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~-----~l~~-~ 474 (1178)
.++++.+| +++|+||||||||||+.+|. |...|..|.+..+...+. ....+..|++++|++ .++. -
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~---~~~~~~~v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIR---EGEVRAQVKLAFENANGKKYTITRSL 91 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHh---CCCCcEEEEEEEEeCCCCEEEEEEEh
Confidence 34566677 99999999999999999994 988888776652221111 123456899999998 2332 3
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHH------HHHHHHhccCCCEEEEeC
Q 001041 475 SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR------IAIARAILKDPRILLLDE 548 (1178)
Q Consensus 475 ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqr------i~lARal~~~~~illlDe 548 (1178)
|+.+|+.++. .+++. +.+ .+...+||+||||| ++||||+..+|++++|||
T Consensus 92 ~~~~~~~~~~----~~~~~---------~~~-----------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDE 147 (204)
T cd03240 92 AILENVIFCH----QGESN---------WPL-----------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDE 147 (204)
T ss_pred hHhhceeeec----hHHHH---------HHH-----------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcC
Confidence 9999998642 22221 111 45567899999996 799999999999999999
Q ss_pred CCCCCCHHhHH-HHHHHHHHHhc--CCeEEEEecCcchhhccCEEEEEeC
Q 001041 549 ATSALDAESEK-VVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHR 595 (1178)
Q Consensus 549 ~ts~lD~~~~~-~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~ 595 (1178)
||++||+++.. .+.+.++++.+ ++|+|++||+++.+..||+|++|++
T Consensus 148 P~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 148 PTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred CccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEee
Confidence 99999999998 99999988765 6799999999998888999999964
No 420
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.89 E-value=1.2e-23 Score=215.05 Aligned_cols=127 Identities=29% Similarity=0.452 Sum_probs=112.2
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
|+|+|||++|. ++.+++|+||+|++||.+.+||||||||||+++++.|+++|++|+|+|||.||++++...||++||
T Consensus 2 I~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 79999999996 346999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccc-cccHHHHHhcCCC-CCCC----HHHHHHHHHHcCch--HHHhhccccc
Q 001041 1123 LVSQEPVLF-NDTIRANIAYGKG-GDAT----EAEIQAASEMANAH--KFICSLQQVR 1172 (1178)
Q Consensus 1123 iV~Qdp~LF-~gTIreNI~~g~~-~~as----deei~~Al~~A~~~--dfI~~LP~gl 1172 (1178)
||-|..-|| +-||.|||++-+. ...+ ++.+.+.++..++. +|-.+.|..+
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eL 136 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHEL 136 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhc
Confidence 999999999 7899999986421 1223 44567788899996 5888877644
No 421
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=1.9e-23 Score=208.62 Aligned_cols=122 Identities=32% Similarity=0.487 Sum_probs=109.0
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCC-----CeEEECCcccCC--CCh
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA-----GHITLDGVEIQK--LQL 1114 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~-----G~I~IDG~dI~~--i~l 1114 (1178)
.++++|+++.|. +..+|+|||++|++++.+|++|||||||||+++.|-|+.|... |+|.+||+||.+ ++.
T Consensus 7 ~~~~~~l~~yYg---~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 7 AIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred eeEecceeEEEC---chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 589999999996 3459999999999999999999999999999999999999976 999999999976 579
Q ss_pred HHHHHhccccccccccccccHHHHHhcCCCC-C----CCHHHHHHHHHHcCchHHHh
Q 001041 1115 KWLRQQMGLVSQEPVLFNDTIRANIAYGKGG-D----ATEAEIQAASEMANAHKFIC 1166 (1178)
Q Consensus 1115 ~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~-~----asdeei~~Al~~A~~~dfI~ 1166 (1178)
-.||++||+|+|.|.-|..||+||++||..- . .-||-++++++.|.+||-+.
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVK 140 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVK 140 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhH
Confidence 9999999999999999999999999999431 1 22455788999999999774
No 422
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.89 E-value=7.1e-23 Score=221.90 Aligned_cols=133 Identities=33% Similarity=0.573 Sum_probs=122.4
Q ss_pred ccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHh
Q 001041 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1178)
Q Consensus 1041 g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~ 1120 (1178)
|.|+++|++++|+.. +.++|+|+||+|++||.+||+|++|||||||+++|.|++.|++|+|.+||.++.+.+...+|++
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 469999999999742 2469999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhccccccccc
Q 001041 1121 MGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1178)
Q Consensus 1121 IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v 1176 (1178)
++++||+|.+|++|++|||.+.. ..+.+++.++++..++.+++.+||.|++|.+
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~--~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~ 133 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFG--EYSDEELWQALERVGLKEFVESLPGGLDTVV 133 (221)
T ss_pred EEEECCCCccccchHHHHhCcCC--CCCHHHHHHHHHHhCcHHHHHhccccccccc
Confidence 99999999999999999998753 3577889999999999999999999998864
No 423
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=4e-23 Score=234.62 Aligned_cols=125 Identities=30% Similarity=0.493 Sum_probs=106.0
Q ss_pred CccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccC-----CCCCeEEECCcccC--
Q 001041 1038 DVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD-----PDAGHITLDGVEIQ-- 1110 (1178)
Q Consensus 1038 ~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~-----p~~G~I~IDG~dI~-- 1110 (1178)
+..+.|+|+||+|+|++. ..++|+||||+|++||++|||||||||||||+++|+|+++ |++|+|.|||+|++
T Consensus 76 ~~~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~ 154 (329)
T PRK14257 76 NHANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSK 154 (329)
T ss_pred CcCceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 445789999999999642 3469999999999999999999999999999999999997 57999999999997
Q ss_pred CCChHHHHHhccccccccccccccHHHHHhcCCC-CCCCHHH-----HHHHHHHcCchH
Q 001041 1111 KLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKG-GDATEAE-----IQAASEMANAHK 1163 (1178)
Q Consensus 1111 ~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~-~~asdee-----i~~Al~~A~~~d 1163 (1178)
++++..+|+++++|||+|.+|++||+|||.|++. ...++++ +.++++.+++++
T Consensus 155 ~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~ 213 (329)
T PRK14257 155 KISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWD 213 (329)
T ss_pred ccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcc
Confidence 5567889999999999999999999999998742 1245544 455677777644
No 424
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.89 E-value=4.8e-23 Score=227.12 Aligned_cols=182 Identities=19% Similarity=0.221 Sum_probs=132.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccCCCC-CCcEEECCe-ecCCCC-H-HHHhcceEEEcCCCCC----------CcccHH
Q 001041 412 GTTAALVGQSGSGKSTVISLIERFYDPQ-AGEVLIDGI-NLKEFQ-L-QWIRKKIGLVSQEPVL----------FTGSIK 477 (1178)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~~~~-~G~i~i~g~-~~~~~~-~-~~~r~~i~~v~Q~~~l----------~~~ti~ 477 (1178)
..+++||||||||||||+.+|.+.+.+. .|++...|. ++-... . ...+.++++++|+|-. ..-||+
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 5699999999999999999999999876 468888776 432111 1 1124589999999621 145778
Q ss_pred HHHhcCCCC--------CCHHHHHHHHHHhcHHH----------HHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhc-
Q 001041 478 DNIAYGKDD--------ATTEEIRVATELANAAK----------FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL- 538 (1178)
Q Consensus 478 ~ni~~~~~~--------~~~~~~~~~~~~~~~~~----------~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~- 538 (1178)
+|+..+... ...+++.+.++.+++.- .+..+-+. .........+||||||||++||||++
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~-~~~~~~~~~~lS~G~~qr~~la~al~~ 183 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNM-GGVWKESLTELSGGQRSLVALSLILAL 183 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHh-HHhhcccccccCHHHHHHHHHHHHHHH
Confidence 777654321 12344555555544320 00000000 02345667889999999999999997
Q ss_pred ---cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEe
Q 001041 539 ---KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIH 594 (1178)
Q Consensus 539 ---~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~ 594 (1178)
.+|+++||||||++||+.....+.+.++++.++.|+|+|||+.+.+..||+|+-+.
T Consensus 184 ~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~~~~ 242 (251)
T cd03273 184 LLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLFRTR 242 (251)
T ss_pred hhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 57899999999999999999999999998877889999999988888999998775
No 425
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.89 E-value=2.1e-23 Score=256.73 Aligned_cols=199 Identities=25% Similarity=0.428 Sum_probs=166.2
Q ss_pred CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC--CCCCcEEECCeecCCCCHHHHhcceEEEcCCC-CCCcc
Q 001041 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD--PQAGEVLIDGINLKEFQLQWIRKKIGLVSQEP-VLFTG 474 (1178)
Q Consensus 398 ~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~--~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~-~l~~~ 474 (1178)
.+.+|+|++=-++||.++|++|+|||||||||+.|.|=.. ..+|+|+|+|.+..+ +..++.+|||.|++ ++-.-
T Consensus 803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~~ 879 (1391)
T KOG0065|consen 803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPEL 879 (1391)
T ss_pred ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCccc
Confidence 3579999999999999999999999999999999998532 257899999987654 66788999999987 67788
Q ss_pred cHHHHHhcCC----C-CCCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCC-CEE
Q 001041 475 SIKDNIAYGK----D-DATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP-RIL 544 (1178)
Q Consensus 475 ti~~ni~~~~----~-~~~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~-~il 544 (1178)
||||-+.|.. | +.++ +.++++.+..++.+. -|..||.-|..||..||.|+.||=-|..|| .||
T Consensus 880 TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~-------~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~il 952 (1391)
T KOG0065|consen 880 TVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEY-------ADALVGLPGSGLSTEQRKRLTIGVELVANPSSIL 952 (1391)
T ss_pred chHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhh-------hhhhccCCCCCCCHHHhceeeEEEEEecCCceeE
Confidence 9999998852 1 2232 234444444444332 367799999999999999999999999999 899
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcch--hhccCEEEEEe-CCEEEEecChhH
Q 001041 545 LLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLST--VRNADMIAVIH-RGKIVEKGTHSK 606 (1178)
Q Consensus 545 llDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~--~~~~d~i~~l~-~G~i~~~g~~~~ 606 (1178)
.||||||+||++++..|.+.++++. .|+|+++.=|+++- .+..|+++.|+ +|+.++.|+..+
T Consensus 953 FLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 953 FLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred EecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 9999999999999999999999875 68999999999984 57799999996 689999998754
No 426
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.88 E-value=3.8e-22 Score=250.22 Aligned_cols=102 Identities=31% Similarity=0.537 Sum_probs=92.9
Q ss_pred Cccc-hhcCCCCCCChHHHHHHHHHHHhccCC---CEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhh
Q 001041 511 GIDT-LVGEHGTQLSGGQKQRIAIARAILKDP---RILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR 585 (1178)
Q Consensus 511 g~~t-~~~~~g~~lSgGqkqri~lARal~~~~---~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~ 585 (1178)
|++. .++....+||||||||++|||+|+++| +++||||||++||++....+.+.++++. +++|+|+|+|+++.+.
T Consensus 818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~ 897 (943)
T PRK00349 818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK 897 (943)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 5554 368888999999999999999999999 9999999999999999999999998875 5789999999999998
Q ss_pred ccCEEEEE------eCCEEEEecChhHHhcCCC
Q 001041 586 NADMIAVI------HRGKIVEKGTHSKLVEDPE 612 (1178)
Q Consensus 586 ~~d~i~~l------~~G~i~~~g~~~~l~~~~~ 612 (1178)
.||+|++| ++|+|++.|+++++.+++.
T Consensus 898 ~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~ 930 (943)
T PRK00349 898 TADWIIDLGPEGGDGGGEIVATGTPEEVAKVEA 930 (943)
T ss_pred hCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcc
Confidence 99999999 7999999999999987644
No 427
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.88 E-value=2.8e-23 Score=221.34 Aligned_cols=184 Identities=21% Similarity=0.274 Sum_probs=133.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHh-cc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIR-KK 461 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r-~~ 461 (1178)
.|+++|.. +|. +..+++++++ ++++|+|||||||||++++|. .++|.+. ...| ++
T Consensus 5 ~l~l~nfk-~~~---~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~-----~~~~~~~ 60 (212)
T cd03274 5 KLVLENFK-SYA---GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRA-----SKMRQKK 60 (212)
T ss_pred EEEEECcc-cCC---CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCH-----HHhhhhh
Confidence 36777765 664 3458888887 899999999999999999997 2334332 1223 57
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCCCCCHHHHH-----HH-HH----HhcHHHHHHhCCCCccchhcCCCCCCChHHHHH
Q 001041 462 IGLVSQEPVLFT-GSIKDNIAYGKDDATTEEIR-----VA-TE----LANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1178)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~ni~~~~~~~~~~~~~-----~~-~~----~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqr 530 (1178)
+++++|+..++. .|.++++.+.......+..+ .. .. ...+ ..+..+|++.++.+ ..||+|||||
T Consensus 61 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~-~~~~~L~~~~~~~~----~~lS~G~~~r 135 (212)
T cd03274 61 LSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEV-EQIAQMPKKSWKNI----SNLSGGEKTL 135 (212)
T ss_pred HHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcE-EEeeccccccccch----hhcCHHHHHH
Confidence 999999987654 46777766543211111000 00 00 0111 12344566665544 4799999999
Q ss_pred HHHHHHhcc----CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeC
Q 001041 531 IAIARAILK----DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHR 595 (1178)
Q Consensus 531 i~lARal~~----~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~ 595 (1178)
++||||++. +|++++|||||++||+.+...+.+.++++.++.|+|+|||+.+....||+|++|..
T Consensus 136 ~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 136 SSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 999999963 58999999999999999999999999988778899999999887788999999963
No 428
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=4.9e-22 Score=214.96 Aligned_cols=190 Identities=28% Similarity=0.417 Sum_probs=134.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcc---CCCCCCcEEECCeecCCCCHHHHh
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF---YDPQAGEVLIDGINLKEFQLQWIR 459 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~---~~~~~G~i~i~g~~~~~~~~~~~r 459 (1178)
.|.++|.+.+-. ++..+.|-||.|-.|..+++|||+|-|||||++-|.-- ++|. |
T Consensus 264 DIKiEnF~ISA~---Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpn---I---------------- 321 (807)
T KOG0066|consen 264 DIKIENFDISAQ---GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPN---I---------------- 321 (807)
T ss_pred cceeeeeeeecc---cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCC---C----------------
Confidence 377888777653 34588999999999999999999999999999988742 2332 1
Q ss_pred cceEEEcCCCCCCcccHHHHHhcCC-------------------CCCC-HHHHHHH---HHH-------hcHHHHHHhCC
Q 001041 460 KKIGLVSQEPVLFTGSIKDNIAYGK-------------------DDAT-TEEIRVA---TEL-------ANAAKFIDKLP 509 (1178)
Q Consensus 460 ~~i~~v~Q~~~l~~~ti~~ni~~~~-------------------~~~~-~~~~~~~---~~~-------~~~~~~i~~~~ 509 (1178)
-+-+|-|+..--+.|--+-++-.. .+.+ .+++.++ ++. +.+...+..|
T Consensus 322 -DvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGL- 399 (807)
T KOG0066|consen 322 -DVLLCEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGL- 399 (807)
T ss_pred -ceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhc-
Confidence 256666665443333222222110 0000 1112111 111 1122223333
Q ss_pred CCccchhcCCCC-CCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-c
Q 001041 510 QGIDTLVGEHGT-QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-A 587 (1178)
Q Consensus 510 ~g~~t~~~~~g~-~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~ 587 (1178)
|.+-.+-++.. .+|||=|-||+|||||+..|-+|+|||||.+||-...-++-+.+..+ .+|.++|+|+-.++.. |
T Consensus 400 -GFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW--kKTLLIVSHDQgFLD~VC 476 (807)
T KOG0066|consen 400 -GFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQGFLDSVC 476 (807)
T ss_pred -CCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh--hheeEEEecccchHHHHH
Confidence 66777767665 49999999999999999999999999999999999888888888776 4899999999999976 8
Q ss_pred CEEEEEeCCEEE
Q 001041 588 DMIAVIHRGKIV 599 (1178)
Q Consensus 588 d~i~~l~~G~i~ 599 (1178)
..|+.||+-++.
T Consensus 477 tdIIHLD~qkLh 488 (807)
T KOG0066|consen 477 TDIIHLDNQKLH 488 (807)
T ss_pred HHHhhhhhhhhh
Confidence 999999876654
No 429
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.88 E-value=9.7e-23 Score=204.83 Aligned_cols=127 Identities=28% Similarity=0.424 Sum_probs=110.1
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccC-CCChHHHHHhc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ-KLQLKWLRQQM 1121 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~-~i~l~~LR~~I 1121 (1178)
|+++||+.+|.+ ..||+|||++|++||+++|+||||||||||++.|.++-+|++|+|.|||.++. +.++..+|+++
T Consensus 3 i~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 3 IEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred EEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 899999999963 35999999999999999999999999999999999999999999999998773 34899999999
Q ss_pred cccccccccc-cccHHHHHhcCCC--CCCCHH----HHHHHHHHcCchHHHhhccccc
Q 001041 1122 GLVSQEPVLF-NDTIRANIAYGKG--GDATEA----EIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1122 siV~Qdp~LF-~gTIreNI~~g~~--~~asde----ei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
|+|+|...|| +-|+.||+.+++- ..-+.+ .-.+.++++++.|-..+.|..|
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qL 137 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQL 137 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCcccc
Confidence 9999999999 6799999998742 122333 3455678999999999988765
No 430
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.88 E-value=1.9e-22 Score=223.25 Aligned_cols=135 Identities=30% Similarity=0.513 Sum_probs=122.8
Q ss_pred ccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHH
Q 001041 1039 VKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLR 1118 (1178)
Q Consensus 1039 ~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR 1118 (1178)
..|.|+++||+++|+.. +.++|+|+||+|+|||.+||+|++|||||||+++|+|+++|++|+|++||.++.+.+...+|
T Consensus 16 ~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 94 (257)
T cd03288 16 LGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR 94 (257)
T ss_pred CCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHh
Confidence 46789999999999742 24699999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhccccccccc
Q 001041 1119 QQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1178)
Q Consensus 1119 ~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v 1176 (1178)
++|++|+|+|.+|++|+++|+.+.. ...+++++++++.+++++++..+|.|++|.+
T Consensus 95 ~~i~~v~q~~~l~~~tv~~nl~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~ 150 (257)
T cd03288 95 SRLSIILQDPILFSGSIRFNLDPEC--KCTDDRLWEALEIAQLKNMVKSLPGGLDAVV 150 (257)
T ss_pred hhEEEECCCCcccccHHHHhcCcCC--CCCHHHHHHHHHHhCcHHHHhhcccccCcEe
Confidence 9999999999999999999997642 2356778999999999999999999999864
No 431
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.87 E-value=4e-22 Score=216.77 Aligned_cols=137 Identities=42% Similarity=0.750 Sum_probs=120.7
Q ss_pred CccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHH
Q 001041 1038 DVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWL 1117 (1178)
Q Consensus 1038 ~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~L 1117 (1178)
...|.|+++|++++|+++.+.++|+|+||+|++||.+||+||+|||||||+++|+|+++|++|+|.+||.++...+...+
T Consensus 7 ~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 86 (226)
T cd03248 7 HLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYL 86 (226)
T ss_pred CcCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHH
Confidence 34578999999999975322469999999999999999999999999999999999999999999999999988888888
Q ss_pred HHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccc
Q 001041 1118 RQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSR 1175 (1178)
Q Consensus 1118 R~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~ 1175 (1178)
|+++++|||++.+|.+|++||+.++.. ..+.+++++.++...+++++..+|.|+++.
T Consensus 87 ~~~i~~~~q~~~l~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~ 143 (226)
T cd03248 87 HSKVSLVGQEPVLFARSLQDNIAYGLQ-SCSFECVKEAAQKAHAHSFISELASGYDTE 143 (226)
T ss_pred HhhEEEEecccHHHhhhHHHHhccccC-CCCHHHHHHHHHHcCcHHHHHhccccccch
Confidence 999999999999999999999998743 345566777777788999999999888764
No 432
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=3.9e-22 Score=217.36 Aligned_cols=132 Identities=42% Similarity=0.748 Sum_probs=120.5
Q ss_pred ccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHh
Q 001041 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1178)
Q Consensus 1041 g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~ 1120 (1178)
|+|+++|++++|++ ..++|+|+||+|++||.++|+||+|||||||+++|.|++.|++|+|.+||.++.+.+...+|++
T Consensus 1 ~~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (229)
T cd03254 1 GEIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM 78 (229)
T ss_pred CeEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhh
Confidence 46999999999963 2359999999999999999999999999999999999999999999999999999888899999
Q ss_pred ccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccc
Q 001041 1121 MGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSR 1175 (1178)
Q Consensus 1121 IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~ 1175 (1178)
++++||++.+|++|++||+.++.. ...++++.++++..++.++++.+|.|+++.
T Consensus 79 i~~~~q~~~~~~~tv~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 132 (229)
T cd03254 79 IGVVLQDTFLFSGTIMENIRLGRP-NATDEEVIEAAKEAGAHDFIMKLPNGYDTV 132 (229)
T ss_pred EEEecCCchhhhhHHHHHHhccCC-CCCHHHHHHHHHHhChHHHHHhCcccccCH
Confidence 999999999999999999998743 456778888999999999999999998765
No 433
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.87 E-value=4.3e-22 Score=218.14 Aligned_cols=131 Identities=39% Similarity=0.698 Sum_probs=118.5
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
|+++||+++|+.+ ..++|+|+||+|++||.+||+|++|||||||+++|.|++.|++|+|++||.|+...+...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 5799999999642 346999999999999999999999999999999999999999999999999999888888999999
Q ss_pred ccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccc
Q 001041 1123 LVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSR 1175 (1178)
Q Consensus 1123 iV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~ 1175 (1178)
++||++.+|+.|++|||.++.. ..+.+++.++++..++++++..+|.|+++.
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 131 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADP-GMSMERVIEAAKLAGAHDFISELPEGYDTI 131 (237)
T ss_pred EEcCCchhccchHHHHhhccCC-CCCHHHHHHHHHHcCcHHHHHhCcccccch
Confidence 9999999999999999998643 456677888889999999999999988764
No 434
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.87 E-value=2.5e-21 Score=242.53 Aligned_cols=97 Identities=34% Similarity=0.571 Sum_probs=88.4
Q ss_pred Cccc-hhcCCCCCCChHHHHHHHHHHHhcc---CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhh
Q 001041 511 GIDT-LVGEHGTQLSGGQKQRIAIARAILK---DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR 585 (1178)
Q Consensus 511 g~~t-~~~~~g~~lSgGqkqri~lARal~~---~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~ 585 (1178)
|++. .+++...+||||||||++|||+|.+ +|++|||||||++||+...+.+.+.++++. ++.|+|+|+|+++.+.
T Consensus 816 gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~ 895 (924)
T TIGR00630 816 GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK 895 (924)
T ss_pred CCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 5654 4688889999999999999999997 599999999999999999999999998875 4789999999999998
Q ss_pred ccCEEEEE------eCCEEEEecChhHH
Q 001041 586 NADMIAVI------HRGKIVEKGTHSKL 607 (1178)
Q Consensus 586 ~~d~i~~l------~~G~i~~~g~~~~l 607 (1178)
.||+|++| ++|+|++.|+++++
T Consensus 896 ~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 896 TADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999999 79999999999876
No 435
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.87 E-value=1.1e-18 Score=194.81 Aligned_cols=269 Identities=19% Similarity=0.319 Sum_probs=216.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 62 IIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGL 141 (1178)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~ 141 (1178)
++++++.++.++..+..|++++.+++........ ...........++++.++...+.....+...+.+.+...++|.+
T Consensus 2 ~l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 79 (275)
T PF00664_consen 2 FLAILLSILSGLLSLLFPLLLGQIIDSLSSGNSD--NNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKR 79 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666677777788899998875433222 11112222222222333334444444444567788999999999
Q ss_pred HHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 001041 142 YLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSG 221 (1178)
Q Consensus 142 ~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~ 221 (1178)
+++++++.|..+|++. ++|++++|+++|++.+++.+...+..++..+..+++.+++++.++|.+++++++..|+..++.
T Consensus 80 ~~~~~~~~~~~~~~~~-~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~ 158 (275)
T PF00664_consen 80 LFEKLLRLPYSYFDKN-SSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFLIS 158 (275)
T ss_dssp HHHHHHHSHHHHHHHS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhh-cccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHhhh
Confidence 9999999999999974 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 222 GVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCS 301 (1178)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (1178)
..+.+..++..++..+..++..+.+.|.++|+++||+|++|+.+.+++.+..++..+...+.....++.......+....
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (275)
T PF00664_consen 159 FIFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLS 238 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988888888888777777777777777
Q ss_pred HHHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHH
Q 001041 302 YALSVWYGGKL-ILEEGYNGGQVVNVMVAVLTG 333 (1178)
Q Consensus 302 ~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~l~~ 333 (1178)
.++.+++|..+ +..+.++.|.++.++.+....
T Consensus 239 ~~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~ 271 (275)
T PF00664_consen 239 IVLILIFGAYLSVINGQISIGTLVAFLSLSSQL 271 (275)
T ss_dssp HHHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHH
Confidence 77888889988 889999999887766555443
No 436
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.86 E-value=5.4e-21 Score=214.39 Aligned_cols=214 Identities=22% Similarity=0.410 Sum_probs=173.9
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeec-CCCCHHHHh-
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINL-KEFQLQWIR- 459 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~-~~~~~~~~r- 459 (1178)
..++++|++..-+ + +.+.++++||++++||+++|.|-.|-|-+-|+.+|.|+..|.+|+|.++|+|+ ...+....|
T Consensus 256 ~vL~V~~L~v~~~-~-~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~ 333 (501)
T COG3845 256 VVLEVEDLSVKDR-R-GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRR 333 (501)
T ss_pred eEEEEeeeEeecC-C-CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHh
Confidence 4589999998743 2 34689999999999999999999999999999999999999999999999997 667777666
Q ss_pred cceEEEcCCCC----CCcccHHHHHhcCCCC---------CCHHHHHHHHHHhcHHHHHHhC---CCCccchhcCCCCCC
Q 001041 460 KKIGLVSQEPV----LFTGSIKDNIAYGKDD---------ATTEEIRVATELANAAKFIDKL---PQGIDTLVGEHGTQL 523 (1178)
Q Consensus 460 ~~i~~v~Q~~~----l~~~ti~~ni~~~~~~---------~~~~~~~~~~~~~~~~~~i~~~---~~g~~t~~~~~g~~l 523 (1178)
..++|||.|.+ ....|+.||+.++.-. .+..++.... .+.++.+ +.+.++. ..+|
T Consensus 334 ~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a-----~~li~~fdVr~~~~~~~----a~~L 404 (501)
T COG3845 334 LGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFA-----RELIEEFDVRAPSPDAP----ARSL 404 (501)
T ss_pred cCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHH-----HHHHHHcCccCCCCCcc----hhhc
Confidence 56999999984 5678999999986432 1122332222 2233333 2333333 3579
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhh-ccCEEEEEeCCEEEEe
Q 001041 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEK 601 (1178)
Q Consensus 524 SgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~ 601 (1178)
|||+.||+-+||-+.++|++||...||-+||..+...|.+.|.+.. +|+.|++|+-+++.+- .||||.||.+|+|+..
T Consensus 405 SGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~ 484 (501)
T COG3845 405 SGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGI 484 (501)
T ss_pred CCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceecc
Confidence 9999999999999999999999999999999999999988887665 6889999999999875 5999999999999987
Q ss_pred cChhH
Q 001041 602 GTHSK 606 (1178)
Q Consensus 602 g~~~~ 606 (1178)
.++++
T Consensus 485 ~~~~~ 489 (501)
T COG3845 485 VPPEE 489 (501)
T ss_pred ccccc
Confidence 76654
No 437
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.86 E-value=6.3e-22 Score=218.87 Aligned_cols=126 Identities=27% Similarity=0.461 Sum_probs=113.3
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhc
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1178)
.|+++||+.+|.+. .||+||||+|+.||.++|||||||||||++++|+||.+|++|+|+|||.|++++++++ |.|
T Consensus 3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 58999999999632 2999999999999999999999999999999999999999999999999999999876 899
Q ss_pred ccccccccccc-ccHHHHHhcCCCC-----CCCHHHHHHHHHHcCchHHHhhccccc
Q 001041 1122 GLVSQEPVLFN-DTIRANIAYGKGG-----DATEAEIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1122 siV~Qdp~LF~-gTIreNI~~g~~~-----~asdeei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
++|+|+.-||. .|++|||+|+... +--++++.++++.-++.+.+++.|..+
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~L 134 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQL 134 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccC
Confidence 99999999995 5999999998431 123667899999999999999998765
No 438
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=1.1e-21 Score=215.03 Aligned_cols=131 Identities=44% Similarity=0.713 Sum_probs=120.0
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
|+++||+++|++ +.++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDP--GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 578999999963 235999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhccccccccc
Q 001041 1123 LVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1178)
Q Consensus 1123 iV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v 1176 (1178)
++||++.+|++|++||+.++.. ..+++++.++++..++.+.+..+|.|+++.+
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 131 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRP-DATDEEVIEAAKAAQIHDKIMRFPDGYDTIV 131 (236)
T ss_pred EECCCChhhcchHHHHHhhcCC-CCCHHHHHHHHHHcCcHHHHHhccccccchh
Confidence 9999999999999999998743 4677888899999999999999999988753
No 439
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.86 E-value=1.1e-21 Score=215.10 Aligned_cols=132 Identities=61% Similarity=0.989 Sum_probs=118.5
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
|+++|++++|++..+.++|+|+||+|++||.+||+|++|||||||+++|+|+++|++|+|.+||.++.+.+...+|++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 57899999997432346999999999999999999999999999999999999999999999999998888888889999
Q ss_pred ccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccc
Q 001041 1123 LVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSR 1175 (1178)
Q Consensus 1123 iV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~ 1175 (1178)
++||++.+|+.|++||+.++.. ..+.+++.++++..++.+++..+|.|+++.
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 132 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKP-DATDEEVEEAAKKANIHDFIMSLPDGYDTL 132 (238)
T ss_pred EECCchhhhhhhHHHHhhccCC-CCCHHHHHHHHHHcChHHHHHhhcccccee
Confidence 9999999999999999998743 446677888888889999999999988764
No 440
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.86 E-value=1.7e-21 Score=210.94 Aligned_cols=134 Identities=37% Similarity=0.659 Sum_probs=120.5
Q ss_pred ccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHh
Q 001041 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1178)
Q Consensus 1041 g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~ 1120 (1178)
|+|+++|++++|+++ ..++|+|+||+|++||.+||+||+|||||||+++|.|+++|++|+|.++|.++..++...+|+.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (220)
T cd03245 1 GRIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRN 79 (220)
T ss_pred CeEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 469999999999642 2469999999999999999999999999999999999999999999999999988888888999
Q ss_pred ccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhccccccccc
Q 001041 1121 MGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1178)
Q Consensus 1121 IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v 1176 (1178)
++++||++.+|..|++||+.++.. ..+.+++.++++..++.+.+.++|.|++|.+
T Consensus 80 i~~~~q~~~~~~~tv~e~l~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~ 134 (220)
T cd03245 80 IGYVPQDVTLFYGTLRDNITLGAP-LADDERILRAAELAGVTDFVNKHPNGLDLQI 134 (220)
T ss_pred EEEeCCCCccccchHHHHhhcCCC-CCCHHHHHHHHHHcCcHHHHHhcccccccee
Confidence 999999999999999999988642 3456778889999999999999999998764
No 441
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=2.3e-21 Score=209.81 Aligned_cols=190 Identities=31% Similarity=0.446 Sum_probs=147.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.+-++||+|.||+ .+|.+++++|-|.--..++||||+|.|||||+++|.|.++|++|+.+-+- |-+|
T Consensus 586 vLGlH~VtFgy~g--qkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh-----------rL~i 652 (807)
T KOG0066|consen 586 VLGLHDVTFGYPG--QKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH-----------RLRI 652 (807)
T ss_pred eeecccccccCCC--CCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc-----------eeee
Confidence 4678999999986 45899999999999999999999999999999999999999999876543 4479
Q ss_pred EEEcCCCC--C-CcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 463 GLVSQEPV--L-FTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 463 ~~v~Q~~~--l-~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
|+..|+.- | ...|-.|-+.-++ +...++.+.++...++..- -+|. ....||||||.|++||-..++
T Consensus 653 G~FdQh~~E~L~~Eetp~EyLqr~F-Nlpyq~ARK~LG~fGL~sH-------AHTi---kikdLSGGQKaRValaeLal~ 721 (807)
T KOG0066|consen 653 GWFDQHANEALNGEETPVEYLQRKF-NLPYQEARKQLGTFGLASH-------AHTI---KIKDLSGGQKARVALAELALG 721 (807)
T ss_pred echhhhhHHhhccccCHHHHHHHhc-CCChHHHHHHhhhhhhhhc-------cceE---eeeecCCcchHHHHHHHHhcC
Confidence 99988762 2 2345555554322 3445555555555444321 1222 235799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCE-EEEEeCCEE
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADM-IAVIHRGKI 598 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~-i~~l~~G~i 598 (1178)
.||||||||||.+||.++...+-++|.++ +..||+|+|+-..+...|. .+|+++-.|
T Consensus 722 ~PDvlILDEPTNNLDIESIDALaEAIney--~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i 779 (807)
T KOG0066|consen 722 GPDVLILDEPTNNLDIESIDALAEAINEY--NGGVIMVSHDERLIVETDCNLWVVENQGI 779 (807)
T ss_pred CCCEEEecCCCCCcchhhHHHHHHHHHhc--cCcEEEEecccceeeecCceEEEEccCCh
Confidence 99999999999999999999999999887 3579999999998877554 344454433
No 442
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.86 E-value=4.8e-22 Score=218.31 Aligned_cols=183 Identities=18% Similarity=0.174 Sum_probs=129.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCee-c------CCCCHHHHhcceEEEcCCCC--CCcccHHHHHh--
Q 001041 413 TTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGIN-L------KEFQLQWIRKKIGLVSQEPV--LFTGSIKDNIA-- 481 (1178)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~-~------~~~~~~~~r~~i~~v~Q~~~--l~~~ti~~ni~-- 481 (1178)
.+++|+||||||||||+.+|.+.+.+..|++..++.+ + ...+.....-.+.+..|++. ++..+++++-.
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~ 102 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSY 102 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEE
Confidence 3999999999999999999999988777777654321 1 01111122334556556542 34444444321
Q ss_pred -cCCCCCCHHHHHHHHHHhcHHHHHHh--CCCCccchhcC---------CCCCCChHHHHHHHHHHHhcc----CCCEEE
Q 001041 482 -YGKDDATTEEIRVATELANAAKFIDK--LPQGIDTLVGE---------HGTQLSGGQKQRIAIARAILK----DPRILL 545 (1178)
Q Consensus 482 -~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~g~~t~~~~---------~g~~lSgGqkqri~lARal~~----~~~ill 545 (1178)
+.....+.+++.+.++.+++..+... +++|.-+.+.+ ...+||||||||++||||++. +|+++|
T Consensus 103 ~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~ll 182 (247)
T cd03275 103 RINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFV 182 (247)
T ss_pred EECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEE
Confidence 11223556777777777776422111 23343333322 236899999999999999975 489999
Q ss_pred EeCCCCCCCHHhHHHHHHHHHHHhc-CCeEEEEecCcchhhccCEEEEEeC
Q 001041 546 LDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRNADMIAVIHR 595 (1178)
Q Consensus 546 lDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~~d~i~~l~~ 595 (1178)
|||||++||+.....+.+.++++.+ +.|+|+|||+.+.+..||++++|..
T Consensus 183 lDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~~ 233 (247)
T cd03275 183 LDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVYR 233 (247)
T ss_pred EecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEEe
Confidence 9999999999999999999988765 7899999999998889999999963
No 443
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=1.8e-21 Score=212.96 Aligned_cols=131 Identities=50% Similarity=0.819 Sum_probs=118.6
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
|+++|++++|++. +.++|+|+||++++||.+||+|++|||||||+++|.|++.|++|+|.+||.++.+.+...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 5789999999643 236999999999999999999999999999999999999999999999999999888889999999
Q ss_pred ccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccc
Q 001041 1123 LVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSR 1175 (1178)
Q Consensus 1123 iV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~ 1175 (1178)
++||++.+|+.|++||+.++.. ..+.+++.++++..++++++..+|.|+++.
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 131 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRP-GATREEVEEAARAANAHEFIMELPEGYDTV 131 (234)
T ss_pred EeCCCCeeccccHHHHhhccCC-CCCHHHHHHHHHHcCcHHHHHhcccCccee
Confidence 9999999999999999998743 456677888889999999999999888764
No 444
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.85 E-value=1.5e-21 Score=217.16 Aligned_cols=126 Identities=29% Similarity=0.524 Sum_probs=112.6
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhc
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1178)
.|+|+||+-+|. +..+|+||||+|++||.++++|||||||||++++|+||.+|++|+|.|||.||.+++.+ +|.|
T Consensus 5 ~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i 79 (352)
T COG3842 5 ALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI 79 (352)
T ss_pred eEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence 599999999996 34699999999999999999999999999999999999999999999999999998876 6899
Q ss_pred cccccccccc-cccHHHHHhcCCC--CCCCH----HHHHHHHHHcCchHHHhhccccc
Q 001041 1122 GLVSQEPVLF-NDTIRANIAYGKG--GDATE----AEIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1122 siV~Qdp~LF-~gTIreNI~~g~~--~~asd----eei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
++|+|+--|| +-||+|||+||.. ....+ +.+.++++.+++.+|-.+.|..+
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qL 137 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQL 137 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhh
Confidence 9999999999 7899999999953 11232 36899999999999988887654
No 445
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=1.5e-21 Score=206.41 Aligned_cols=130 Identities=27% Similarity=0.433 Sum_probs=110.0
Q ss_pred EEEeeeEEeCCCC--CCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC---hHHH
Q 001041 1043 IELHHVSFKYPSR--PDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ---LKWL 1117 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~--~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~---l~~L 1117 (1178)
|+|+|||..|+.. ....+|+||||+|++||..||||+||||||||++++-|+-+|++|+|.+||+|+..++ +..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 8999999999852 1235999999999999999999999999999999999999999999999998887776 5556
Q ss_pred HHhcccccccccccc-ccHHHHHhcCCC-CCCCHH----HHHHHHHHcCchHHHhhccccc
Q 001041 1118 RQQMGLVSQEPVLFN-DTIRANIAYGKG-GDATEA----EIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1118 R~~IsiV~Qdp~LF~-gTIreNI~~g~~-~~asde----ei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
|++|++|+|++.|++ .|+.+|++|.-. ...+.+ .+.+.++.+++.|.-.+-|..|
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qL 142 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQL 142 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhc
Confidence 789999999999997 999999998421 123343 4677899999999888877554
No 446
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=4.6e-21 Score=214.11 Aligned_cols=194 Identities=27% Similarity=0.368 Sum_probs=161.1
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcc
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1178)
.-+++.+|+|.|+.. +.+.+.++++.++.-+++++||++|+||||+++++.+...|..|.+.+.+ |.+
T Consensus 361 p~l~i~~V~f~y~p~-~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r 428 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPS-EYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR 428 (582)
T ss_pred CeeEEEeeeccCCCc-chhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence 358999999999643 23799999999999999999999999999999999999999999998887 678
Q ss_pred eEEEcCCCCCC-cccH--HHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCC-CCCCChHHHHHHHHHHHh
Q 001041 462 IGLVSQEPVLF-TGSI--KDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEH-GTQLSGGQKQRIAIARAI 537 (1178)
Q Consensus 462 i~~v~Q~~~l~-~~ti--~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~-g~~lSgGqkqri~lARal 537 (1178)
|+|-.|...=+ +-.+ -|-..=..|..+++++++.|...++...+ .-. ...||||||-|+++|-+.
T Consensus 429 i~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~l-----------a~~si~~LSGGQKsrvafA~~~ 497 (582)
T KOG0062|consen 429 IKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGEL-----------ALQSIASLSGGQKSRVAFAACT 497 (582)
T ss_pred ecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchh-----------hhccccccCCcchhHHHHHHHh
Confidence 99999987422 2222 22222123455789999988877655444 222 256999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEEE
Q 001041 538 LKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVE 600 (1178)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~ 600 (1178)
+.+|.+|+|||||..||.++-..+-++|+.. +..||+|||+.+++.. |+.+.+.++|++..
T Consensus 498 ~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F--~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 498 WNNPHLLVLDEPTNHLDRDSLGALAKALKNF--NGGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred cCCCcEEEecCCCccccHHHHHHHHHHHHhc--CCcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 9999999999999999999998888899876 3579999999999986 99999999999985
No 447
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.85 E-value=6.2e-19 Score=199.67 Aligned_cols=341 Identities=13% Similarity=0.118 Sum_probs=219.3
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 001041 824 ARLSADAASVRALVGDALARIVQNISTAAAGLIIAFT-ASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEAS 902 (1178)
Q Consensus 824 ~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~-~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 902 (1178)
.|+++|++..-..+......++...+.++....-++. ..|.-...++..+.+..++...+++.+.+...+.++..++..
T Consensus 186 QrltqDv~kf~~~l~sl~s~l~~a~~di~~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfR 265 (659)
T KOG0060|consen 186 QRLTQDVEKFCRQLSSLYSNLLKAPFDLVYYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFR 265 (659)
T ss_pred HHHhHHHHHHHHHHHHHHHhhhccceeeehhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchh
Confidence 4899999888887777766666666655554444443 345544555555555566666666666666777777777777
Q ss_pred HHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH----hcCCCC
Q 001041 903 QVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLV----EDGKAT 978 (1178)
Q Consensus 903 ~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~----~~g~~t 978 (1178)
-.-++...+.+.|.-|+.++.+..+-+...++..+...+.....-...-+..++-++..++...+.+.-+ ..+.++
T Consensus 266 y~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h~y~~~s 345 (659)
T KOG0060|consen 266 YKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGHVYDDLS 345 (659)
T ss_pred hheeeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeecccccCCcC
Confidence 6677788888899999998877766555555544433222211111111111222222222211111111 233556
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCCC-------------CC-------CCCCC
Q 001041 979 FSDVFKVFFS----LTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKID-------------PS-------DESGT 1034 (1178)
Q Consensus 979 ~g~l~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~-------------~~-------~~~~~ 1034 (1178)
..++...+.. ...+...++.+.....++.+......|+.++.+.-.+.. .+ .++..
T Consensus 346 ~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~ 425 (659)
T KOG0060|consen 346 PAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSG 425 (659)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCc
Confidence 6666554432 223344455555555566666666777776654211110 00 00001
Q ss_pred cccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEE--CCcccCCC
Q 001041 1035 ILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITL--DGVEIQKL 1112 (1178)
Q Consensus 1035 ~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~I--DG~dI~~i 1112 (1178)
...+..-.|+|++|++.=|++ +....+|+||+|+.|+.+-|+||||||||+|++.|.++|+..+|+|.- ||-+
T Consensus 426 ~~~~~Dn~i~~e~v~l~tPt~-g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~---- 500 (659)
T KOG0060|consen 426 KAEPADNAIEFEEVSLSTPTN-GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP---- 500 (659)
T ss_pred ccccccceEEeeeeeecCCCC-CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC----
Confidence 111223469999999999875 434667899999999999999999999999999999999999999875 4433
Q ss_pred ChHHHHHhccccccccccccccHHHHHhcC------CCCCCCHHHHHHHHHHcCchHHHhhccccccccc
Q 001041 1113 QLKWLRQQMGLVSQEPVLFNDTIRANIAYG------KGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1178)
Q Consensus 1113 ~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g------~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v 1176 (1178)
+.+=+|||-|++=.||+||-+-|- ....++|++|.+-++.+++.+.++. .+|+|+++
T Consensus 501 ------~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r-~ggld~~~ 563 (659)
T KOG0060|consen 501 ------KDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLER-EGGLDQQV 563 (659)
T ss_pred ------CceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHH-hCCCCchh
Confidence 346899999999999999999873 1135899999999999999887766 48898764
No 448
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.85 E-value=2.6e-21 Score=206.74 Aligned_cols=119 Identities=30% Similarity=0.451 Sum_probs=106.8
Q ss_pred EEEeeeEEeCCCCCC--ccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHh
Q 001041 1043 IELHHVSFKYPSRPD--VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~--~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~ 1120 (1178)
|+++||+++|++..+ +++|+|+||+|++||.++|+|++|||||||+++|+|+++|++|+|++|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 579999999964311 3699999999999999999999999999999999999999999999999 6
Q ss_pred ccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhccccccccc
Q 001041 1121 MGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1178)
Q Consensus 1121 IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v 1176 (1178)
|++|||+|.+|++|++||+.++. ..++++++++++.+++.+++..+|.|++|.+
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 121 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGK--PFDEERYEKVIKACALEPDLEILPDGDLTEI 121 (204)
T ss_pred EEEEecCchhccCcHHHHhccCC--CcCHHHHHHHHHHcCcHHHHHhccCccccee
Confidence 99999999999999999999863 3456778899999999999999999988754
No 449
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=4.3e-21 Score=195.59 Aligned_cols=123 Identities=34% Similarity=0.534 Sum_probs=107.3
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC---hHHHH
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ---LKWLR 1118 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~---l~~LR 1118 (1178)
-|+++||+-.||+ ++.+|+||||+|++||.|||||+||||||||++.|.|+.||++|+|.++|.++..++ +..+|
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 4899999999984 457999999999999999999999999999999999999999999999999999988 77788
Q ss_pred Hhcccccccccccc-ccHHHHHhcCCCCC----------CC---HHHHHHHHHHcCchHHHh
Q 001041 1119 QQMGLVSQEPVLFN-DTIRANIAYGKGGD----------AT---EAEIQAASEMANAHKFIC 1166 (1178)
Q Consensus 1119 ~~IsiV~Qdp~LF~-gTIreNI~~g~~~~----------as---deei~~Al~~A~~~dfI~ 1166 (1178)
++||+|+|++-|-. -|+.+|+..|+.+. .+ ..+..+|++..++.|+.-
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~ 142 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAY 142 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHH
Confidence 99999999999875 58999998775321 22 345678899999988763
No 450
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.85 E-value=2.6e-21 Score=205.92 Aligned_cols=122 Identities=28% Similarity=0.475 Sum_probs=110.0
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
++.+|++|+|+ ++++|+|+||+|++||.++|+||+|||||||+++|.|+..|.+|+|++||.||.+++..++-++++
T Consensus 3 L~~~~ls~~y~---~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 3 LEVENLSFGYG---GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eEEEEEEEEEC---CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence 78999999996 346999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccc-ccccccHHHHHhcCCCCC---------CCHHHHHHHHHHcCchHHHhh
Q 001041 1123 LVSQEP-VLFNDTIRANIAYGKGGD---------ATEAEIQAASEMANAHKFICS 1167 (1178)
Q Consensus 1123 iV~Qdp-~LF~gTIreNI~~g~~~~---------asdeei~~Al~~A~~~dfI~~ 1167 (1178)
||||++ .-|.-|++|=+.+|+.+. .+++.+.+|++..++.+|..+
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r 134 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADR 134 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcC
Confidence 999996 568889999999997541 123358889999999998765
No 451
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.84 E-value=8.3e-21 Score=187.51 Aligned_cols=226 Identities=24% Similarity=0.371 Sum_probs=172.7
Q ss_pred EEEeEEEECCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC----CCCcEEECCeecCCCCHHHHh
Q 001041 385 ELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP----QAGEVLIDGINLKEFQLQWIR 459 (1178)
Q Consensus 385 ~~~~~~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~----~~G~i~i~g~~~~~~~~~~~r 459 (1178)
.++|++..+.... ...+++++|+++..||+-++||+||||||-+.++|+|...- +.-+..+|++|+-.+++...|
T Consensus 5 DIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RR 84 (330)
T COG4170 5 DIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERR 84 (330)
T ss_pred cccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhh
Confidence 3455555443221 24588999999999999999999999999999999997643 455678899999999988877
Q ss_pred c----ceEEEcCCCCCC---ccc----HHHHHhcCCCCC---------CHHHHHHHHHHhcHHHHHHhCCCCccchhcCC
Q 001041 460 K----KIGLVSQEPVLF---TGS----IKDNIAYGKDDA---------TTEEIRVATELANAAKFIDKLPQGIDTLVGEH 519 (1178)
Q Consensus 460 ~----~i~~v~Q~~~l~---~~t----i~~ni~~~~~~~---------~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~ 519 (1178)
+ .|++++|+|.-+ +.+ +-+||-+- ... ...+..+.+..++++|- .......
T Consensus 85 k~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~w-TfkgrWWq~F~WrKrrAIeLLHrVGIKdH--------kDIM~SY 155 (330)
T COG4170 85 KLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAW-TYKGRWWQRFGWRKRRAIELLHRVGIKDH--------KDIMRSY 155 (330)
T ss_pred hhhccchhhhhcCchhhcChHHHHHHHHHhhCccc-cccchHhhhhchhHHHHHHHHHHhccccH--------HHHHHhC
Confidence 4 688999999754 223 34455321 110 12233344445554331 0112344
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhhc-cCEEEEEeCC
Q 001041 520 GTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRG 596 (1178)
Q Consensus 520 g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G 596 (1178)
...|--|+-|++.||-|+..+|++||-||||.++|+.|..+|++.+..+. ++.|+++++|++..+.. ||+|-||.-|
T Consensus 156 P~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCG 235 (330)
T COG4170 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCG 235 (330)
T ss_pred cchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEec
Confidence 45678899999999999999999999999999999999999999987765 46788999999999976 9999999999
Q ss_pred EEEEecChhHHhcCCCchHHHHH
Q 001041 597 KIVEKGTHSKLVEDPEGAYSQLI 619 (1178)
Q Consensus 597 ~i~~~g~~~~l~~~~~~~~~~~~ 619 (1178)
+-+|.++.+++++.+...|.+-.
T Consensus 236 Q~~ESa~~e~l~~~PhHPYTqAL 258 (330)
T COG4170 236 QTVESAPSEELVTMPHHPYTQAL 258 (330)
T ss_pred ccccccchhHHhcCCCCchHHHH
Confidence 99999999999999888887643
No 452
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=4e-21 Score=214.85 Aligned_cols=131 Identities=24% Similarity=0.480 Sum_probs=112.2
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhc
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1178)
-|+++||+++|+.....++|+|+||+|++||.+||+|++|||||||+++|+|+++|++|+|.+||.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 38999999999632123599999999999999999999999999999999999999999999999999988888999999
Q ss_pred ccccccc--ccccccHHHHHhcCCCC-CCC----HHHHHHHHHHcCchHHHhhccccc
Q 001041 1122 GLVSQEP--VLFNDTIRANIAYGKGG-DAT----EAEIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1122 siV~Qdp--~LF~gTIreNI~~g~~~-~as----deei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
++|||+| .++..|++|||.++... ..+ ++++.++++..++.++..+.|..|
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~L 141 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARL 141 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccC
Confidence 9999998 46778999999986321 122 356788999999999887776543
No 453
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=4.5e-21 Score=204.70 Aligned_cols=127 Identities=34% Similarity=0.603 Sum_probs=113.2
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccC-CCChHHHHHh
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ-KLQLKWLRQQ 1120 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~-~i~l~~LR~~ 1120 (1178)
-|+++|++|+|+++ .++|+|+||+|++||.++|+|+||||||||+++|.+++.|++|.|.+||.|++ +.+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 48999999999855 57999999999999999999999999999999999999999999999999998 5899999999
Q ss_pred cccccccc--ccccccHHHHHhcCCCC-CCCHHH----HHHHHHHcCchHHHhhccc
Q 001041 1121 MGLVSQEP--VLFNDTIRANIAYGKGG-DATEAE----IQAASEMANAHKFICSLQQ 1170 (1178)
Q Consensus 1121 IsiV~Qdp--~LF~gTIreNI~~g~~~-~asdee----i~~Al~~A~~~dfI~~LP~ 1170 (1178)
+++|+|+| .+|..||.|.++||+.+ ..+.+| +.+|++.++++++-..-|.
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~ 137 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPF 137 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCcc
Confidence 99999999 89999999999999542 244444 6778999999887666554
No 454
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.84 E-value=2.4e-21 Score=207.46 Aligned_cols=127 Identities=32% Similarity=0.590 Sum_probs=109.1
Q ss_pred cccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHH
Q 001041 1040 KGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ 1119 (1178)
Q Consensus 1040 ~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~ 1119 (1178)
.+.|+++|++++|+.. ..++|+|+||+|++||.+||+|++|||||||+++|+|+++|++|+|.+||.++.+.+...+|+
T Consensus 4 ~~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (207)
T cd03369 4 HGEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRS 82 (207)
T ss_pred CCeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHh
Confidence 4679999999999742 236999999999999999999999999999999999999999999999999999999989999
Q ss_pred hccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhccccc
Q 001041 1120 QMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1120 ~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
+|++|||+|.+|++|+++||.+.. ..+++++.++++ ++..+..|+.|-
T Consensus 83 ~i~~v~q~~~~~~~tv~~~l~~~~--~~~~~~~~~~l~---~~~~~~~LS~G~ 130 (207)
T cd03369 83 SLTIIPQDPTLFSGTIRSNLDPFD--EYSDEEIYGALR---VSEGGLNLSQGQ 130 (207)
T ss_pred hEEEEecCCcccCccHHHHhcccC--CCCHHHHHHHhh---ccCCCCcCCHHH
Confidence 999999999999999999998753 356677777776 344445555543
No 455
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.84 E-value=3.6e-21 Score=207.74 Aligned_cols=128 Identities=30% Similarity=0.483 Sum_probs=108.2
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChH---HHHH
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLK---WLRQ 1119 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~---~LR~ 1119 (1178)
|+++||+++|++. ..++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.+++.. .+|+
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 7899999999632 23699999999999999999999999999999999999999999999999999877543 4788
Q ss_pred hcccccccccccc-ccHHHHHhcCC-----CCCCCHHHHHHHHHHcCchHHHhhcccc
Q 001041 1120 QMGLVSQEPVLFN-DTIRANIAYGK-----GGDATEAEIQAASEMANAHKFICSLQQV 1171 (1178)
Q Consensus 1120 ~IsiV~Qdp~LF~-gTIreNI~~g~-----~~~asdeei~~Al~~A~~~dfI~~LP~g 1171 (1178)
++++|||++.+|. .|++||+.++. .....++++.++++..++.++..+.|..
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 138 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQ 138 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhh
Confidence 9999999999986 59999998741 1112356788999999998887666543
No 456
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.84 E-value=4.6e-21 Score=217.95 Aligned_cols=130 Identities=21% Similarity=0.357 Sum_probs=109.9
Q ss_pred EEEeeeEEeCCCCC-CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHH---HH
Q 001041 1043 IELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW---LR 1118 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~-~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~---LR 1118 (1178)
|+|+||+++|+++. ..++|+||||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+.+++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 79999999996321 246999999999999999999999999999999999999999999999999999887655 57
Q ss_pred Hhcccccccccccc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCchHHHhhccccc
Q 001041 1119 QQMGLVSQEPVLFN-DTIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1119 ~~IsiV~Qdp~LF~-gTIreNI~~g~~-~~as----deei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
++|++|||++.||. .|++||++++.. ...+ ++++.++++..++.++..+.|..|
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~L 141 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNL 141 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhC
Confidence 89999999999995 799999997521 1122 345788999999988887766544
No 457
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.84 E-value=4.6e-21 Score=186.23 Aligned_cols=123 Identities=29% Similarity=0.485 Sum_probs=108.2
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
|.+++|.|+|..-+ =.++++|++||+|||+||||||||||++|+.||..|++|+|+|+|+|....++. ++-+|
T Consensus 2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVS 74 (231)
T ss_pred ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChh
Confidence 56889999996432 367999999999999999999999999999999999999999999999887764 57899
Q ss_pred ccccccccc-cccHHHHHhcCCCCC-----CCHHHHHHHHHHcCchHHHhhccccc
Q 001041 1123 LVSQEPVLF-NDTIRANIAYGKGGD-----ATEAEIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1123 iV~Qdp~LF-~gTIreNI~~g~~~~-----asdeei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
+++||..|| +=||++||.+|..|. ...+.+..|+.++++.+|..+||..+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~L 130 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGEL 130 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcccc
Confidence 999999999 569999999996542 23567899999999999999999765
No 458
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.84 E-value=6.6e-21 Score=194.80 Aligned_cols=125 Identities=28% Similarity=0.452 Sum_probs=105.2
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChH---HHH
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLK---WLR 1118 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~---~LR 1118 (1178)
-|++++|+++|.+ +.||+||||+|++||.+||+|+||||||||++++.|+..|++|+|+|+|.||.+++-+ .+|
T Consensus 8 ~I~vr~v~~~fG~---~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 8 LIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred eEEEeeeeeecCC---EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 4999999999963 4699999999999999999999999999999999999999999999999999999764 569
Q ss_pred Hhccccccccccccc-cHHHHHhcCCC--CCCCHHHHHH----HHHHcCchHH-Hhhcc
Q 001041 1119 QQMGLVSQEPVLFND-TIRANIAYGKG--GDATEAEIQA----ASEMANAHKF-ICSLQ 1169 (1178)
Q Consensus 1119 ~~IsiV~Qdp~LF~g-TIreNI~~g~~--~~asdeei~~----Al~~A~~~df-I~~LP 1169 (1178)
+++|+++|.--||+. ||+||+.|--. ...+++++++ -++.+++..- -+.+|
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P 143 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP 143 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc
Confidence 999999999999965 99999987311 1345555544 5677888776 34444
No 459
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=8.1e-21 Score=211.78 Aligned_cols=129 Identities=29% Similarity=0.521 Sum_probs=112.1
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhc
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1178)
-|+++||+++|+. +.++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|++||.++.+.+...+|++|
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 3899999999963 23599999999999999999999999999999999999999999999999999988888999999
Q ss_pred ccccccc--ccccccHHHHHhcCCCC-CCC----HHHHHHHHHHcCchHHHhhccccc
Q 001041 1122 GLVSQEP--VLFNDTIRANIAYGKGG-DAT----EAEIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1122 siV~Qdp--~LF~gTIreNI~~g~~~-~as----deei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
++|||+| .+|..|+++||.++... ..+ ++++.++++..++.++..+.|..|
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~L 139 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHL 139 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhC
Confidence 9999998 68899999999986321 122 356788899999988887776543
No 460
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.83 E-value=9.7e-21 Score=197.15 Aligned_cols=123 Identities=28% Similarity=0.419 Sum_probs=107.3
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhc
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1178)
.+++++|+.+|.+ ..||+||||+|++||.|+||||||||||||++++.||.+|++|+|.+||.++.... ..+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~-----~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPG-----PDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCC-----CCE
Confidence 4899999999964 46999999999999999999999999999999999999999999999999985543 568
Q ss_pred ccccccccccc-ccHHHHHhcCCCCC-----CCHHHHHHHHHHcCchHHHhhccccc
Q 001041 1122 GLVSQEPVLFN-DTIRANIAYGKGGD-----ATEAEIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1122 siV~Qdp~LF~-gTIreNI~~g~~~~-----asdeei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
+||+|++.||. -|++||+.+|.... -..+.+.++++.+++.+|-.+.|..+
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qL 131 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQL 131 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCcccc
Confidence 99999999995 79999999874211 12446888999999999999988765
No 461
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.83 E-value=1.6e-20 Score=202.89 Aligned_cols=129 Identities=19% Similarity=0.317 Sum_probs=113.1
Q ss_pred EEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCCh----HHHHH
Q 001041 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL----KWLRQ 1119 (1178)
Q Consensus 1044 ~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l----~~LR~ 1119 (1178)
.+.|+.|+|+.+ .++|+|+||+|++||.++|+|++|||||||+++|.|+++|++|+|.+||.++.+.+. ...|+
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 467899999743 469999999999999999999999999999999999999999999999999877653 34677
Q ss_pred hccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhccccccccc
Q 001041 1120 QMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1178)
Q Consensus 1120 ~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v 1176 (1178)
.+++++|+|.+|+.|++|||.++. ..++++..++++..++.+++..+|.|++|.+
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 134 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGS--PFNKQRYKAVTDACSLQPDIDLLPFGDQTEI 134 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcC--cCCHHHHHHHHHHhCcHHHHHhCcCccccCc
Confidence 899999999999999999999863 3456778889999999999999999987753
No 462
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.83 E-value=6.5e-20 Score=201.34 Aligned_cols=178 Identities=24% Similarity=0.458 Sum_probs=135.0
Q ss_pred EEECCCCCCCccccceeEEE-----eCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEE
Q 001041 390 YFSYPARPNEQIFSGFSISI-----SSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGL 464 (1178)
Q Consensus 390 ~~~y~~~~~~~~l~~i~l~i-----~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~ 464 (1178)
-+.|++- ...+.+..|++ ..||+++++||+|-||||++++|.|.++|++|. ..+ -+|+|
T Consensus 342 lv~y~~~--~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~-~~~-------------~~vSy 405 (591)
T COG1245 342 LVEYPDL--KKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS-EED-------------LKVSY 405 (591)
T ss_pred eeecchh--eeecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC-Ccc-------------ceEee
Confidence 3455432 23455666655 457899999999999999999999999999998 211 17999
Q ss_pred EcCCC-CCCcccHHHHHhcCCCC-CCHHHHH-HHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCC
Q 001041 465 VSQEP-VLFTGSIKDNIAYGKDD-ATTEEIR-VATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1178)
Q Consensus 465 v~Q~~-~l~~~ti~~ni~~~~~~-~~~~~~~-~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~ 541 (1178)
=||-- .-++|||++-+.-..+. .....++ +.++ |-.++..+.....+||||+.||+|+|-||.+++
T Consensus 406 KPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~-----------pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reA 474 (591)
T COG1245 406 KPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVK-----------PLNLEDLLERPVDELSGGELQRVAIAAALSREA 474 (591)
T ss_pred cceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcC-----------ccchHHHHhcccccCCchhHHHHHHHHHhcccc
Confidence 99953 24899999987633222 1222221 1111 334555566667789999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhhc-cCEEEEEe
Q 001041 542 RILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIH 594 (1178)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~ 594 (1178)
|++|||||+|.||.+..-.+-+.|++.. .++|.++|-|++..+.. +||++|.+
T Consensus 475 DlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 475 DLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred CEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence 9999999999999998877777887754 46899999999999886 89999986
No 463
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=1.5e-20 Score=213.03 Aligned_cols=126 Identities=21% Similarity=0.354 Sum_probs=103.1
Q ss_pred cEEEeeeEEeCCCCC--CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCC-------
Q 001041 1042 EIELHHVSFKYPSRP--DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL------- 1112 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~--~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i------- 1112 (1178)
-|+++||+|+|++.. +.++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|++||+++.+.
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~ 100 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence 499999999996421 23699999999999999999999999999999999999999999999999999753
Q ss_pred ---------ChHHHHHhcccccccc--ccccccHHHHHhcCCC-CCCCHH----HHHHHHHHcCch-HHHhh
Q 001041 1113 ---------QLKWLRQQMGLVSQEP--VLFNDTIRANIAYGKG-GDATEA----EIQAASEMANAH-KFICS 1167 (1178)
Q Consensus 1113 ---------~l~~LR~~IsiV~Qdp--~LF~gTIreNI~~g~~-~~asde----ei~~Al~~A~~~-dfI~~ 1167 (1178)
+...+|++|++|+|+| .+|++|++|||.++.. ...+++ .+.++++..++. ++..+
T Consensus 101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~ 172 (320)
T PRK13631 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLER 172 (320)
T ss_pred ccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcC
Confidence 4567899999999998 7999999999998732 123333 345566667774 44443
No 464
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.83 E-value=3.3e-20 Score=195.78 Aligned_cols=172 Identities=19% Similarity=0.213 Sum_probs=117.8
Q ss_pred ccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCC-CHHHHhcceEEEcCCCCCCcccHHHHH
Q 001041 402 FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF-QLQWIRKKIGLVSQEPVLFTGSIKDNI 480 (1178)
Q Consensus 402 l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~-~~~~~r~~i~~v~Q~~~l~~~ti~~ni 480 (1178)
++++++++.+| +.+|+||||||||||+.+|.-.+..... ....|....++ ....-...|.+.+|+.-++. |
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----N- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccC-----C-
Confidence 45677777777 8899999999999999998754322211 00112111000 00011346888888765444 2
Q ss_pred hcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHh----ccCCCEEEEeCCCCCCCHH
Q 001041 481 AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI----LKDPRILLLDEATSALDAE 556 (1178)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal----~~~~~illlDe~ts~lD~~ 556 (1178)
+ ..... ...+.++++. .....+...+||+|||||++||||+ +.+|+++||||||++||+.
T Consensus 84 ----~-~~~~~------~~~~~~~l~~-----~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~ 147 (198)
T cd03276 84 ----P-LCVLS------QDMARSFLTS-----NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMV 147 (198)
T ss_pred ----c-CCHHH------HHHHHHHhcc-----ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHH
Confidence 1 11111 1122333433 2223456678999999999999999 6899999999999999999
Q ss_pred hHHHHHHHHHHHhc----CCeEEEEecCcchhhccCEEEEEeCCE
Q 001041 557 SEKVVQEALDRIMV----NRTTVIVAHRLSTVRNADMIAVIHRGK 597 (1178)
Q Consensus 557 ~~~~i~~~i~~~~~----~~t~i~itH~~~~~~~~d~i~~l~~G~ 597 (1178)
+...+.+.|.+..+ ++|++++||+++.+...|+|-+|..++
T Consensus 148 ~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 148 NRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 99999998887643 258899999999999999999998653
No 465
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=1.4e-20 Score=207.18 Aligned_cols=123 Identities=27% Similarity=0.434 Sum_probs=106.4
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccC---CCCCeEEECCcccCCCChHHHH
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD---PDAGHITLDGVEIQKLQLKWLR 1118 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~---p~~G~I~IDG~dI~~i~l~~LR 1118 (1178)
.|+++||+++|++ +++|+|+||+|++||.+||+|++|||||||+++|+|+++ |++|+|.+||.|+.+.+...+|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 3889999999963 359999999999999999999999999999999999985 6899999999999998888899
Q ss_pred HhccccccccccccccHHHHHhcCCC-------CCCCHHHHHHHHHHcCchHHHhh
Q 001041 1119 QQMGLVSQEPVLFNDTIRANIAYGKG-------GDATEAEIQAASEMANAHKFICS 1167 (1178)
Q Consensus 1119 ~~IsiV~Qdp~LF~gTIreNI~~g~~-------~~asdeei~~Al~~A~~~dfI~~ 1167 (1178)
++|+++||+|.+|+.|++||+.++.. ....++++.++++..++++++..
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 134 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD 134 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH
Confidence 99999999999999999999987521 01233467888999999765543
No 466
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=1.4e-20 Score=205.76 Aligned_cols=125 Identities=28% Similarity=0.457 Sum_probs=105.7
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCCh---HHHHH
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL---KWLRQ 1119 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l---~~LR~ 1119 (1178)
|+++||+++|++ .++|+|+||+|++||++||+||+|||||||+++|.|+++|++|+|.+||.++.+.+. ..+|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 578999999963 359999999999999999999999999999999999999999999999999988764 57889
Q ss_pred hccccccccccccc-cHHHHHhcCCC--CCCC----HHHHHHHHHHcCchHHHhhccc
Q 001041 1120 QMGLVSQEPVLFND-TIRANIAYGKG--GDAT----EAEIQAASEMANAHKFICSLQQ 1170 (1178)
Q Consensus 1120 ~IsiV~Qdp~LF~g-TIreNI~~g~~--~~as----deei~~Al~~A~~~dfI~~LP~ 1170 (1178)
+|++|||++.+|.+ |++||+.++.. ...+ ++++.++++..++.++..+.|.
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 135 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPA 135 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChh
Confidence 99999999999986 99999987521 1122 3456778888888777665443
No 467
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=1.6e-20 Score=204.93 Aligned_cols=128 Identities=24% Similarity=0.369 Sum_probs=106.1
Q ss_pred EEEeeeEEeCCCCC-CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHH---HH
Q 001041 1043 IELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW---LR 1118 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~-~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~---LR 1118 (1178)
|+++||+++|+++. ..++|+|+||+|++||.+||+|++|||||||+++|+|+++|++|+|++||+|+.+++... +|
T Consensus 6 l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~ 85 (233)
T PRK11629 6 LQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELR 85 (233)
T ss_pred EEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHH
Confidence 89999999997421 146999999999999999999999999999999999999999999999999999887654 33
Q ss_pred -Hhccccccccccccc-cHHHHHhcCC-----CCCCCHHHHHHHHHHcCchHHHhhccc
Q 001041 1119 -QQMGLVSQEPVLFND-TIRANIAYGK-----GGDATEAEIQAASEMANAHKFICSLQQ 1170 (1178)
Q Consensus 1119 -~~IsiV~Qdp~LF~g-TIreNI~~g~-----~~~asdeei~~Al~~A~~~dfI~~LP~ 1170 (1178)
+.+++|||++.+|.+ |++||+.++. .....++++.++++..++.++..+.|.
T Consensus 86 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 144 (233)
T PRK11629 86 NQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPS 144 (233)
T ss_pred hccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChh
Confidence 679999999999975 9999998631 111123467888999998877655443
No 468
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=1.8e-20 Score=209.40 Aligned_cols=129 Identities=29% Similarity=0.524 Sum_probs=111.9
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
|+++||+++|++. .+++|+|+||+|++||.+||+|++|||||||+++|+|+++|++|+|.+||.++.+.+...+|+.|+
T Consensus 6 l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 6 IRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred EEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 8999999999642 346999999999999999999999999999999999999999999999999999888888999999
Q ss_pred cccccc--ccccccHHHHHhcCCCC-CCC----HHHHHHHHHHcCchHHHhhccccc
Q 001041 1123 LVSQEP--VLFNDTIRANIAYGKGG-DAT----EAEIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1123 iV~Qdp--~LF~gTIreNI~~g~~~-~as----deei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
+|||+| .+++.|++|||.++... ..+ ++++.++++..++.+++...|..+
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~L 141 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRL 141 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccC
Confidence 999998 56788999999875211 122 345788899999999998877654
No 469
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.82 E-value=1.4e-20 Score=204.68 Aligned_cols=123 Identities=34% Similarity=0.544 Sum_probs=106.3
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhccc-----CCCCCeEEECCcccCCCC--hH
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFY-----DPDAGHITLDGVEIQKLQ--LK 1115 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y-----~p~~G~I~IDG~dI~~i~--l~ 1115 (1178)
|+++||+++|++ .++|+|+||+|++||++||+|++|||||||+++|+|++ +|++|+|.+||.++.+++ ..
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 578999999963 35999999999999999999999999999999999999 999999999999998877 67
Q ss_pred HHHHhccccccccccccccHHHHHhcCCCC-CC-----CHHHHHHHHHHcCchHHHhhc
Q 001041 1116 WLRQQMGLVSQEPVLFNDTIRANIAYGKGG-DA-----TEAEIQAASEMANAHKFICSL 1168 (1178)
Q Consensus 1116 ~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~-~a-----sdeei~~Al~~A~~~dfI~~L 1168 (1178)
.+|+++++|||++.+|..|++||+.++... .. .++++.++++..++.+.+.+.
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 136 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDR 136 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhcc
Confidence 788999999999999999999999875210 11 245678889999998776554
No 470
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.82 E-value=2.4e-20 Score=201.64 Aligned_cols=126 Identities=25% Similarity=0.497 Sum_probs=104.9
Q ss_pred EEEeeeEEeCCCCCC-ccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhc
Q 001041 1043 IELHHVSFKYPSRPD-VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~-~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1178)
|+++||+++|++... .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.. ....+|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 789999999974311 169999999999999999999999999999999999999999999999999976 456788999
Q ss_pred cccccccccccc-cHHHHHhcCCC-----CCCCHHHHHHHHHHcCchHHHhhcc
Q 001041 1122 GLVSQEPVLFND-TIRANIAYGKG-----GDATEAEIQAASEMANAHKFICSLQ 1169 (1178)
Q Consensus 1122 siV~Qdp~LF~g-TIreNI~~g~~-----~~asdeei~~Al~~A~~~dfI~~LP 1169 (1178)
+++||+|.+|.+ |++||+.+... ....++++.++++..++.++..+.+
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 134 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRV 134 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhh
Confidence 999999999985 99999976311 0112456788899999877665433
No 471
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=2.6e-20 Score=204.24 Aligned_cols=123 Identities=32% Similarity=0.623 Sum_probs=107.1
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhc
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1178)
.|+++||+++|++ .++|+|+||+|++||.+||+|++|||||||+++|+|+++|++|+|.+||.|+..++...+|+.+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4899999999963 3599999999999999999999999999999999999999999999999999988888899999
Q ss_pred cccccccccccccHHHHHhcCCC-CCCCHHHHHHHHHHcCch-HHHhh
Q 001041 1122 GLVSQEPVLFNDTIRANIAYGKG-GDATEAEIQAASEMANAH-KFICS 1167 (1178)
Q Consensus 1122 siV~Qdp~LF~gTIreNI~~g~~-~~asdeei~~Al~~A~~~-dfI~~ 1167 (1178)
+++||++.+|+.|++||+.++.. ....++++.++++..++. ++..+
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 127 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATR 127 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhC
Confidence 99999999999999999987632 122345778888888884 45444
No 472
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.82 E-value=2.1e-20 Score=201.44 Aligned_cols=126 Identities=29% Similarity=0.481 Sum_probs=107.3
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChH---HHHH
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLK---WLRQ 1119 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~---~LR~ 1119 (1178)
|+++|++++|++ +.++|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|.+||.|+.+++.. .+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 789999999952 24699999999999999999999999999999999999999999999999999887643 4788
Q ss_pred hcccccccccccc-ccHHHHHhcCC-----CCCCCHHHHHHHHHHcCchHHHhhccc
Q 001041 1120 QMGLVSQEPVLFN-DTIRANIAYGK-----GGDATEAEIQAASEMANAHKFICSLQQ 1170 (1178)
Q Consensus 1120 ~IsiV~Qdp~LF~-gTIreNI~~g~-----~~~asdeei~~Al~~A~~~dfI~~LP~ 1170 (1178)
+++++||+|.+|. .|++||+.++. .+...+++++++++..++.++..+.|.
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 136 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPE 136 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChh
Confidence 9999999999995 69999998741 111235678899999999887766554
No 473
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=2.3e-20 Score=209.49 Aligned_cols=127 Identities=27% Similarity=0.474 Sum_probs=104.2
Q ss_pred EEEeeeEEeCCCCC--CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCC----ChHH
Q 001041 1043 IELHHVSFKYPSRP--DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL----QLKW 1116 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~--~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i----~l~~ 1116 (1178)
|+++||+++|++.. ..++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 89999999996322 13699999999999999999999999999999999999999999999999999764 3467
Q ss_pred HHHhcccccccc--ccccccHHHHHhcCCCC-CCC----HHHHHHHHHHcCch-HHHhhcc
Q 001041 1117 LRQQMGLVSQEP--VLFNDTIRANIAYGKGG-DAT----EAEIQAASEMANAH-KFICSLQ 1169 (1178)
Q Consensus 1117 LR~~IsiV~Qdp--~LF~gTIreNI~~g~~~-~as----deei~~Al~~A~~~-dfI~~LP 1169 (1178)
+|++|++|||+| .+|..|++|||.++... ..+ ++.+.++++..++. ++..+.|
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 143 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSP 143 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCc
Confidence 899999999998 68999999999986321 123 34456777778875 4544433
No 474
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=1.8e-20 Score=210.39 Aligned_cols=128 Identities=27% Similarity=0.496 Sum_probs=105.1
Q ss_pred EEEeeeEEeCCCCC--CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCC----CChHH
Q 001041 1043 IELHHVSFKYPSRP--DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK----LQLKW 1116 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~--~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~----i~l~~ 1116 (1178)
|+|+||+|+|+... .+++|+||||+|++||++||+|++|||||||+++|.|+++|++|+|++||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999996321 1259999999999999999999999999999999999999999999999999963 34667
Q ss_pred HHHhcccccccc--ccccccHHHHHhcCCCC-CCC----HHHHHHHHHHcCch-HHHhhccc
Q 001041 1117 LRQQMGLVSQEP--VLFNDTIRANIAYGKGG-DAT----EAEIQAASEMANAH-KFICSLQQ 1170 (1178)
Q Consensus 1117 LR~~IsiV~Qdp--~LF~gTIreNI~~g~~~-~as----deei~~Al~~A~~~-dfI~~LP~ 1170 (1178)
+|+++++|+|+| .+|..|+.|||.|++.. ..+ ++++.++++..++. ++..+.|.
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~ 143 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPF 143 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcc
Confidence 899999999998 79999999999987421 122 23467778888884 56554443
No 475
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=2.6e-20 Score=209.07 Aligned_cols=125 Identities=30% Similarity=0.560 Sum_probs=104.4
Q ss_pred EEEeeeEEeCCCCC--CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC--hHHHH
Q 001041 1043 IELHHVSFKYPSRP--DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ--LKWLR 1118 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~--~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~--l~~LR 1118 (1178)
|+++||+++|+... ..++|+||||+|++||++||||++|||||||+++|.|+++|++|+|.+||.++.+.+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 89999999997421 136999999999999999999999999999999999999999999999999998754 45789
Q ss_pred Hhcccccccc--ccccccHHHHHhcCCC-CCCCH----HHHHHHHHHcCch--HHHhh
Q 001041 1119 QQMGLVSQEP--VLFNDTIRANIAYGKG-GDATE----AEIQAASEMANAH--KFICS 1167 (1178)
Q Consensus 1119 ~~IsiV~Qdp--~LF~gTIreNI~~g~~-~~asd----eei~~Al~~A~~~--dfI~~ 1167 (1178)
++|+||||+| .+|+.|++|||.++.. ...+. +++.++++..++. ++...
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~ 140 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDK 140 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccC
Confidence 9999999998 5889999999988631 12233 3567888888886 44443
No 476
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.82 E-value=1.9e-20 Score=200.24 Aligned_cols=124 Identities=27% Similarity=0.458 Sum_probs=105.2
Q ss_pred EEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccc
Q 001041 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGL 1123 (1178)
Q Consensus 1044 ~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Isi 1123 (1178)
+++||+++|++. .++|+|+||+|++||++||+||+|||||||+++|+|+++|++|+|.+||.++.. ...|++|++
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 468999999631 469999999999999999999999999999999999999999999999999864 467789999
Q ss_pred ccccc--ccccccHHHHHhcCCCC-CCCHHHHHHHHHHcCchHHHhhccccc
Q 001041 1124 VSQEP--VLFNDTIRANIAYGKGG-DATEAEIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1124 V~Qdp--~LF~gTIreNI~~g~~~-~asdeei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
|||+| .+|+.|++||+.++... ...++++.++++..++.++..+.|..|
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 127 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSL 127 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhC
Confidence 99998 47889999999875321 123457899999999998887766544
No 477
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=2.8e-20 Score=207.49 Aligned_cols=129 Identities=29% Similarity=0.572 Sum_probs=109.3
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhc
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1178)
-|+++|++++|+++ +.++|+|+||+|++||.+||+||+|||||||+++|+|+++|++|+|.+||.++.+.+...+|+++
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 48999999999632 34699999999999999999999999999999999999999999999999999888888899999
Q ss_pred ccccccc--ccccccHHHHHhcCCCC-CCCHH----HHHHHHHHcCchHHHhhcccc
Q 001041 1122 GLVSQEP--VLFNDTIRANIAYGKGG-DATEA----EIQAASEMANAHKFICSLQQV 1171 (1178)
Q Consensus 1122 siV~Qdp--~LF~gTIreNI~~g~~~-~asde----ei~~Al~~A~~~dfI~~LP~g 1171 (1178)
++|||+| .+++.|++|||.++... ..+.+ .+.++++..++.++..+.|..
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 142 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQN 142 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCccc
Confidence 9999998 46678999999875211 12333 367788889998888776543
No 478
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.82 E-value=2.7e-20 Score=200.72 Aligned_cols=128 Identities=29% Similarity=0.450 Sum_probs=106.9
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCCh---HHHHH
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL---KWLRQ 1119 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l---~~LR~ 1119 (1178)
|+++||+++|+++ +++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.+.+. ..+|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 5789999999632 359999999999999999999999999999999999999999999999999987754 35788
Q ss_pred hcccccccccccc-ccHHHHHhcCCC-CCC----CHHHHHHHHHHcCchHHHhhccccc
Q 001041 1120 QMGLVSQEPVLFN-DTIRANIAYGKG-GDA----TEAEIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1120 ~IsiV~Qdp~LF~-gTIreNI~~g~~-~~a----sdeei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
.+++|||++.+|. .|++||+.++.. ... .++++.++++..++.+...+.|..+
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 137 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAEL 137 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhc
Confidence 9999999999998 599999987521 011 2346788899989988776655443
No 479
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.82 E-value=2.2e-20 Score=201.95 Aligned_cols=127 Identities=31% Similarity=0.417 Sum_probs=105.0
Q ss_pred EEEeeeEEeCCCCC-CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHH----H
Q 001041 1043 IELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW----L 1117 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~-~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~----L 1117 (1178)
|+++||+++|++.. ..++|+|+||+|++||++||+||+|||||||+++|+|+++|++|+|.+||.++.+++... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 57899999996321 146999999999999999999999999999999999999999999999999998877433 4
Q ss_pred HHhccccccccccccc-cHHHHHhcCCC-CCC----CHHHHHHHHHHcCchHHHhhcc
Q 001041 1118 RQQMGLVSQEPVLFND-TIRANIAYGKG-GDA----TEAEIQAASEMANAHKFICSLQ 1169 (1178)
Q Consensus 1118 R~~IsiV~Qdp~LF~g-TIreNI~~g~~-~~a----sdeei~~Al~~A~~~dfI~~LP 1169 (1178)
|+++++|||++.+|.+ |++||+.++.. ... .++++.++++..++.++..+.|
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 138 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYP 138 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcCh
Confidence 6789999999999986 99999987521 111 2456788899988877665544
No 480
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=4.2e-20 Score=206.55 Aligned_cols=130 Identities=25% Similarity=0.456 Sum_probs=110.1
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhc
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1178)
-|+++||+++|+.....++|+|+||+|++||.+||+|++|||||||+++|+|+++|++|+|.+||.++.+.+...+|+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 38999999999743234599999999999999999999999999999999999999999999999999988888899999
Q ss_pred ccccccc--ccccccHHHHHhcCCC-CCCCHH----HHHHHHHHcCchHHHhhcccc
Q 001041 1122 GLVSQEP--VLFNDTIRANIAYGKG-GDATEA----EIQAASEMANAHKFICSLQQV 1171 (1178)
Q Consensus 1122 siV~Qdp--~LF~gTIreNI~~g~~-~~asde----ei~~Al~~A~~~dfI~~LP~g 1171 (1178)
++|||+| .++..|+.|||.++.. ...+++ ++.++++..++.++..+.|..
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 140 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPAR 140 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCccc
Confidence 9999998 4778999999987521 123333 457788888998887765543
No 481
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=3e-20 Score=199.75 Aligned_cols=122 Identities=23% Similarity=0.424 Sum_probs=104.0
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
|+++||+|+|++ .++|+|+||+|++| .+||+||+|||||||+++|.|+++|++|+|.++|.++.+.+ ..+|++++
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 579999999963 35999999999999 99999999999999999999999999999999999998877 78899999
Q ss_pred ccccccccccc-cHHHHHhcCC----CC-CCCHHHHHHHHHHcCchHHHhhcc
Q 001041 1123 LVSQEPVLFND-TIRANIAYGK----GG-DATEAEIQAASEMANAHKFICSLQ 1169 (1178)
Q Consensus 1123 iV~Qdp~LF~g-TIreNI~~g~----~~-~asdeei~~Al~~A~~~dfI~~LP 1169 (1178)
+|||++.+|.+ |++||+.+.. .+ ...++++.++++..++.++....|
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 128 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKI 128 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCch
Confidence 99999999986 9999998631 00 111356788899999887655543
No 482
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=3.8e-20 Score=205.82 Aligned_cols=128 Identities=27% Similarity=0.446 Sum_probs=110.6
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhc
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1178)
.|+++||+++|++ .++|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|.+||.|+.+.+...+|+.+
T Consensus 11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 4899999999963 3699999999999999999999999999999999999999999999999999988888999999
Q ss_pred cccccccccccc-cHHHHHhcCCC---------CCCCHHHHHHHHHHcCchHHHhhccccc
Q 001041 1122 GLVSQEPVLFND-TIRANIAYGKG---------GDATEAEIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1122 siV~Qdp~LF~g-TIreNI~~g~~---------~~asdeei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
++|||++.+|.+ |++||+.++.. +...++++.++++..++.+++.+.|..+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 148 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSL 148 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccC
Confidence 999999877654 99999997521 0123456888999999988877665443
No 483
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.81 E-value=3.8e-20 Score=198.49 Aligned_cols=122 Identities=21% Similarity=0.369 Sum_probs=105.1
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
|+++||+++|++ .++|+|+||++++||.++|+|++|||||||+++|.|+.+|++|+|.+||.++.+. ..+|++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 578999999963 3699999999999999999999999999999999999999999999999998765 56788999
Q ss_pred ccccccccc-cccHHHHHhcCCC-CCCCHHHHHHHHHHcCchHHHhhcc
Q 001041 1123 LVSQEPVLF-NDTIRANIAYGKG-GDATEAEIQAASEMANAHKFICSLQ 1169 (1178)
Q Consensus 1123 iV~Qdp~LF-~gTIreNI~~g~~-~~asdeei~~Al~~A~~~dfI~~LP 1169 (1178)
+|||++.+| +.|++||+.++.. ...+++++.++++..++.+...+.|
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 124 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKV 124 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhH
Confidence 999999887 5899999986421 1235678899999999977765543
No 484
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.81 E-value=4e-20 Score=200.27 Aligned_cols=123 Identities=21% Similarity=0.363 Sum_probs=102.4
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
|+++||+++|++. ..++|+|+||+|++||.+||+||+|||||||+++|.|+++|++|+|.+||.++.... ..+|++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEE
Confidence 5799999999642 146999999999999999999999999999999999999999999999999997653 67788999
Q ss_pred ccccccccc-cccHHHHHhcCCC-CCC----CHHHHHHHHHHcCchHHHhh
Q 001041 1123 LVSQEPVLF-NDTIRANIAYGKG-GDA----TEAEIQAASEMANAHKFICS 1167 (1178)
Q Consensus 1123 iV~Qdp~LF-~gTIreNI~~g~~-~~a----sdeei~~Al~~A~~~dfI~~ 1167 (1178)
+|||++.+| +.|+++|+.+... ... .++++.++++..++.+....
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 129 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANK 129 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhC
Confidence 999999999 6899999986411 011 13457788888888766544
No 485
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=4.4e-20 Score=201.68 Aligned_cols=129 Identities=24% Similarity=0.392 Sum_probs=107.3
Q ss_pred EEEeeeEEeCCCCC-CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChH---HHH
Q 001041 1043 IELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLK---WLR 1118 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~-~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~---~LR 1118 (1178)
|+++||+++|++.. ..++|+|+||+|++||.+||+||+|||||||+++|.|+++|++|+|.+||.++...+.. .+|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999996421 12699999999999999999999999999999999999999999999999999877654 358
Q ss_pred Hhcccccccccccc-ccHHHHHhcCCC-CC----CCHHHHHHHHHHcCchHHHhhcccc
Q 001041 1119 QQMGLVSQEPVLFN-DTIRANIAYGKG-GD----ATEAEIQAASEMANAHKFICSLQQV 1171 (1178)
Q Consensus 1119 ~~IsiV~Qdp~LF~-gTIreNI~~g~~-~~----asdeei~~Al~~A~~~dfI~~LP~g 1171 (1178)
+++++|||++.+|. .|++||+.++.. .. ..++++.++++..++.+...+.|..
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 140 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQ 140 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhh
Confidence 89999999999997 699999986421 01 1245688899999998877665543
No 486
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=4.9e-20 Score=206.01 Aligned_cols=128 Identities=23% Similarity=0.421 Sum_probs=109.9
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
++++||+++|+++ .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++...+...++++++
T Consensus 4 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 4 IETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred EEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 7899999999632 35999999999999999999999999999999999999999999999999998888888999999
Q ss_pred cccccc--ccccccHHHHHhcCCC-CCCC----HHHHHHHHHHcCchHHHhhccccc
Q 001041 1123 LVSQEP--VLFNDTIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1123 iV~Qdp--~LF~gTIreNI~~g~~-~~as----deei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
+|||+| .+|+.|++||+.++.. ...+ ++.+.++++..++.++..+.|..+
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 138 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHL 138 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccC
Confidence 999998 4888999999987531 0122 345788899999988877766543
No 487
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.81 E-value=7.5e-20 Score=190.96 Aligned_cols=128 Identities=31% Similarity=0.450 Sum_probs=103.9
Q ss_pred EEEeeeEEeCCCCC-CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCCh---HHHH
Q 001041 1043 IELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL---KWLR 1118 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~-~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l---~~LR 1118 (1178)
|+++||+..|..+. ..++|+|+||+|++||.|||+||||||||||+++|-++-.|++|.|.|+|.|+..++- ..+|
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 67999999996432 2369999999999999999999999999999999999999999999999999999984 4444
Q ss_pred -Hhccccccccccc-cccHHHHHhc----CCCCC-CCHHHHHHHHHHcCchHHHh-hccc
Q 001041 1119 -QQMGLVSQEPVLF-NDTIRANIAY----GKGGD-ATEAEIQAASEMANAHKFIC-SLQQ 1170 (1178)
Q Consensus 1119 -~~IsiV~Qdp~LF-~gTIreNI~~----g~~~~-asdeei~~Al~~A~~~dfI~-~LP~ 1170 (1178)
++||+|+|+..|+ +-|++|||.+ ..... ...+.+.+.++..++.+... +.|.
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~ 141 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPS 141 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCch
Confidence 5799999999988 5599999983 22111 12455677788888886665 4453
No 488
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.81 E-value=6.2e-20 Score=195.26 Aligned_cols=120 Identities=21% Similarity=0.388 Sum_probs=102.0
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
|+++||+++|++ .++|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|++||.++.. ....+|++++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~ 77 (200)
T PRK13540 2 LDVIELDFDYHD---QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLC 77 (200)
T ss_pred EEEEEEEEEeCC---eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheE
Confidence 689999999963 359999999999999999999999999999999999999999999999999975 3467889999
Q ss_pred ccccccccc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHh
Q 001041 1123 LVSQEPVLF-NDTIRANIAYGKGGDATEAEIQAASEMANAHKFIC 1166 (1178)
Q Consensus 1123 iV~Qdp~LF-~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~ 1166 (1178)
++||++.+| ..|+++|+.++......++++.++++..++.+...
T Consensus 78 ~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 122 (200)
T PRK13540 78 FVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLID 122 (200)
T ss_pred EeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhh
Confidence 999999986 68999999986321223456778888777765543
No 489
>PRK10908 cell division protein FtsE; Provisional
Probab=99.81 E-value=4.5e-20 Score=199.93 Aligned_cols=126 Identities=29% Similarity=0.424 Sum_probs=104.8
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHH---HHH
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW---LRQ 1119 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~---LR~ 1119 (1178)
|+++||+++|+. +.++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.+++... +|+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 789999999952 236999999999999999999999999999999999999999999999999998876544 788
Q ss_pred hcccccccccc-ccccHHHHHhcCCC-CCCCH----HHHHHHHHHcCchHHHhhccc
Q 001041 1120 QMGLVSQEPVL-FNDTIRANIAYGKG-GDATE----AEIQAASEMANAHKFICSLQQ 1170 (1178)
Q Consensus 1120 ~IsiV~Qdp~L-F~gTIreNI~~g~~-~~asd----eei~~Al~~A~~~dfI~~LP~ 1170 (1178)
.+++|||+|.+ +..|++|||.++.. ...++ +++.++++..++.+...+.|.
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 136 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPI 136 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCch
Confidence 99999999987 57899999987521 11222 346778888888877665543
No 490
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=7.4e-20 Score=204.96 Aligned_cols=131 Identities=27% Similarity=0.470 Sum_probs=111.7
Q ss_pred ccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCC---CeEEECCcccCCCChHHH
Q 001041 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA---GHITLDGVEIQKLQLKWL 1117 (1178)
Q Consensus 1041 g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~---G~I~IDG~dI~~i~l~~L 1117 (1178)
+-|+++|++|+|++. ..++|+|+||+|++||.+||+|++|||||||+++|+|+++|++ |+|.+||.++.+.+...+
T Consensus 4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 359999999999642 2359999999999999999999999999999999999999987 899999999988888889
Q ss_pred HHhcccccccc--ccccccHHHHHhcCCC-CCCCH----HHHHHHHHHcCchHHHhhccccc
Q 001041 1118 RQQMGLVSQEP--VLFNDTIRANIAYGKG-GDATE----AEIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1118 R~~IsiV~Qdp--~LF~gTIreNI~~g~~-~~asd----eei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
|++|++|||+| .+|+.|++|||.++.. ...+. +++.++++..++.++..+.|..|
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~L 144 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANL 144 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccC
Confidence 99999999998 4678999999987621 12333 44788999999999888766544
No 491
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=5.6e-20 Score=202.12 Aligned_cols=125 Identities=31% Similarity=0.503 Sum_probs=105.8
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC---hHHHHH
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ---LKWLRQ 1119 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~---l~~LR~ 1119 (1178)
|+++||+++|++ +.++|+|+||+|++||.+||+|++|||||||+++|+|+++|++|+|.+||.++...+ ...+|+
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 578999999963 146999999999999999999999999999999999999999999999999998877 567889
Q ss_pred hcccccccccccc-ccHHHHHhcCCC-------------CCCCHHHHHHHHHHcCchHHHhhcc
Q 001041 1120 QMGLVSQEPVLFN-DTIRANIAYGKG-------------GDATEAEIQAASEMANAHKFICSLQ 1169 (1178)
Q Consensus 1120 ~IsiV~Qdp~LF~-gTIreNI~~g~~-------------~~asdeei~~Al~~A~~~dfI~~LP 1169 (1178)
.+++|||++.+|. .|++||+.++.. ....++++.++++..++.+...+-|
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 142 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRA 142 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCc
Confidence 9999999999886 699999986421 0122456778888888887665543
No 492
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.81 E-value=6.6e-20 Score=201.76 Aligned_cols=125 Identities=30% Similarity=0.513 Sum_probs=104.9
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCCh---HHHHH
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL---KWLRQ 1119 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l---~~LR~ 1119 (1178)
|+++||+++|+. +.++|+|+||+|++||++||+||+|||||||+++|+|+++|++|+|.+||.++.+++. ..+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 689999999962 2359999999999999999999999999999999999999999999999999987754 45788
Q ss_pred hcccccccccccc-ccHHHHHhcCCCC-------------CCCHHHHHHHHHHcCchHHHhhcc
Q 001041 1120 QMGLVSQEPVLFN-DTIRANIAYGKGG-------------DATEAEIQAASEMANAHKFICSLQ 1169 (1178)
Q Consensus 1120 ~IsiV~Qdp~LF~-gTIreNI~~g~~~-------------~asdeei~~Al~~A~~~dfI~~LP 1169 (1178)
++++|||++.+|. .|++||+.++... ...++++.++++..++.++..+.|
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 143 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRA 143 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCc
Confidence 9999999999886 6999999875311 112346788888888887765544
No 493
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.81 E-value=8.5e-20 Score=197.93 Aligned_cols=118 Identities=25% Similarity=0.450 Sum_probs=103.7
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhc
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1178)
-|+++||+++|++ .++|+|+||+|++||.+||+||+|||||||+++|.|+++|++|+|.+||.++.+++...+|+++
T Consensus 7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 4899999999963 3599999999999999999999999999999999999999999999999999998888899999
Q ss_pred cccccccccccccHHHHHhcCC---CCCCCHHHHHHHHHHcCch
Q 001041 1122 GLVSQEPVLFNDTIRANIAYGK---GGDATEAEIQAASEMANAH 1162 (1178)
Q Consensus 1122 siV~Qdp~LF~gTIreNI~~g~---~~~asdeei~~Al~~A~~~ 1162 (1178)
++|||++.+|+.|++||+.++. .....++++.++++..++.
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~ 127 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALP 127 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCC
Confidence 9999999999999999998631 1112345577888888875
No 494
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=3.5e-20 Score=199.54 Aligned_cols=123 Identities=31% Similarity=0.512 Sum_probs=103.4
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
|+++||+++|++ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+ ..|++++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--PERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--hhhccEE
Confidence 578999999963 36999999999999999999999999999999999999999999999999998654 3578899
Q ss_pred cccccccccc-ccHHHHHhcCCCC-----CCCHHHHHHHHHHcCchHHHhhccc
Q 001041 1123 LVSQEPVLFN-DTIRANIAYGKGG-----DATEAEIQAASEMANAHKFICSLQQ 1170 (1178)
Q Consensus 1123 iV~Qdp~LF~-gTIreNI~~g~~~-----~asdeei~~Al~~A~~~dfI~~LP~ 1170 (1178)
+|||++.+|. .|++||+.++... ...++++.++++..++.++..+.|.
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 129 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPH 129 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChh
Confidence 9999999885 6999999875210 1123467888999999887766543
No 495
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.81 E-value=4.8e-20 Score=198.25 Aligned_cols=126 Identities=34% Similarity=0.582 Sum_probs=106.1
Q ss_pred EEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccc
Q 001041 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGL 1123 (1178)
Q Consensus 1044 ~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Isi 1123 (1178)
+++||+++|+++ +.++|+|+||+|++||.+||+||+|||||||+++|+|+++|++|+|.+||.++.+.+...+|++|++
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 468999999642 2469999999999999999999999999999999999999999999999999998888889999999
Q ss_pred ccccc--ccccccHHHHHhcCCC-CCCC----HHHHHHHHHHcCchHHHhhccc
Q 001041 1124 VSQEP--VLFNDTIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICSLQQ 1170 (1178)
Q Consensus 1124 V~Qdp--~LF~gTIreNI~~g~~-~~as----deei~~Al~~A~~~dfI~~LP~ 1170 (1178)
+||++ .+++.|++||+.++.. ...+ ++++.++++..++.+++.+.|.
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 133 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPF 133 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcc
Confidence 99998 4678999999987421 0112 3456778888898887766553
No 496
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.81 E-value=7.8e-20 Score=199.07 Aligned_cols=130 Identities=25% Similarity=0.382 Sum_probs=107.8
Q ss_pred cEEEeeeEEeCCCCCC-ccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHH---H
Q 001041 1042 EIELHHVSFKYPSRPD-VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW---L 1117 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~-~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~---L 1117 (1178)
-|+++||+++|+++.. .++|+|+||+|++||.+||+|++|||||||+++|+|+++|++|+|.+||.++.+.+... +
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 4899999999964211 25999999999999999999999999999999999999999999999999998887654 3
Q ss_pred -HHhccccccccccccc-cHHHHHhcCC--C---CCCCHHHHHHHHHHcCchHHHhhcccc
Q 001041 1118 -RQQMGLVSQEPVLFND-TIRANIAYGK--G---GDATEAEIQAASEMANAHKFICSLQQV 1171 (1178)
Q Consensus 1118 -R~~IsiV~Qdp~LF~g-TIreNI~~g~--~---~~asdeei~~Al~~A~~~dfI~~LP~g 1171 (1178)
++.+++|||++.+|.+ |++||+.++. . .....+++.++++..++.++..+.|..
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 146 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQ 146 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhh
Confidence 3689999999999875 9999997631 0 012245688889999998887766643
No 497
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=5.5e-20 Score=210.97 Aligned_cols=128 Identities=25% Similarity=0.421 Sum_probs=106.8
Q ss_pred EEEeeeEEeCCCCC-CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHH---HH
Q 001041 1043 IELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW---LR 1118 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~-~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~---LR 1118 (1178)
|+++||+++|+.+. +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+.+++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996211 346999999999999999999999999999999999999999999999999999887654 47
Q ss_pred Hhcccccccccccc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCchHHHhhccc
Q 001041 1119 QQMGLVSQEPVLFN-DTIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICSLQQ 1170 (1178)
Q Consensus 1119 ~~IsiV~Qdp~LF~-gTIreNI~~g~~-~~as----deei~~Al~~A~~~dfI~~LP~ 1170 (1178)
++|++|||++.+|. .|++||+.++.. ...+ ++++.++++..++.++..+.|.
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 139 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPA 139 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChh
Confidence 89999999999986 799999987521 1122 3457788888888877665543
No 498
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=6e-20 Score=205.63 Aligned_cols=131 Identities=22% Similarity=0.450 Sum_probs=110.5
Q ss_pred cEEEeeeEEeCCCCC---CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC-hHHH
Q 001041 1042 EIELHHVSFKYPSRP---DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ-LKWL 1117 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~---~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~-l~~L 1117 (1178)
-|+++||+++|++.. ++++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 389999999997421 246999999999999999999999999999999999999999999999999998754 4668
Q ss_pred HHhcccccccc--ccccccHHHHHhcCCCC-CC----CHHHHHHHHHHcCchHHHhhccccc
Q 001041 1118 RQQMGLVSQEP--VLFNDTIRANIAYGKGG-DA----TEAEIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1118 R~~IsiV~Qdp--~LF~gTIreNI~~g~~~-~a----sdeei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
|+++++|||+| .+|..|+.+|+.++... .. .++++.++++..++.++..+.|..|
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~L 145 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLL 145 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccC
Confidence 89999999998 47777999999986311 11 2456888999999999988877654
No 499
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.81 E-value=9.6e-20 Score=193.85 Aligned_cols=121 Identities=18% Similarity=0.342 Sum_probs=105.5
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
|+++||+++|++ .++|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|.+||.++.... ..+|++++
T Consensus 1 l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (201)
T cd03231 1 LEADELTCERDG---RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLL 76 (201)
T ss_pred CEEEEEEEEeCC---ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheE
Confidence 578999999963 35999999999999999999999999999999999999999999999999987654 57889999
Q ss_pred ccccccccc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhc
Q 001041 1123 LVSQEPVLF-NDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSL 1168 (1178)
Q Consensus 1123 iV~Qdp~LF-~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~L 1168 (1178)
++||++.++ +.|++||+.+... ..+++++.++++..++.++..+.
T Consensus 77 ~~~q~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~l~~~~l~~~~~~~ 122 (201)
T cd03231 77 YLGHAPGIKTTLSVLENLRFWHA-DHSDEQVEEALARVGLNGFEDRP 122 (201)
T ss_pred EeccccccCCCcCHHHHHHhhcc-cccHHHHHHHHHHcCChhhhcCc
Confidence 999999876 6899999987632 35678889999999998765543
No 500
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.81 E-value=7.2e-20 Score=198.38 Aligned_cols=128 Identities=27% Similarity=0.385 Sum_probs=105.1
Q ss_pred EEEeeeEEeCCCCC-CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHH---H
Q 001041 1043 IELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWL---R 1118 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~-~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~L---R 1118 (1178)
|+++||+++|++.. ..++|+|+||+|++||++||+||+|||||||+++|+|+++|++|+|.+||.|+.+++...+ |
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 78999999996321 1369999999999999999999999999999999999999999999999999988876543 4
Q ss_pred -Hhcccccccccccc-ccHHHHHhcCCC-CCC----CHHHHHHHHHHcCchHHHhhccc
Q 001041 1119 -QQMGLVSQEPVLFN-DTIRANIAYGKG-GDA----TEAEIQAASEMANAHKFICSLQQ 1170 (1178)
Q Consensus 1119 -~~IsiV~Qdp~LF~-gTIreNI~~g~~-~~a----sdeei~~Al~~A~~~dfI~~LP~ 1170 (1178)
++|++|||++.+|. .|++||+.++.. ... .++++.++++..++++...+.|.
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 140 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPS 140 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChh
Confidence 68999999999995 699999986311 011 13457788888888877666543
Done!