Query 001041
Match_columns 1178
No_of_seqs 497 out of 4671
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 07:56:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001041.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001041hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 1E-163 4E-168 1620.6 120.7 1129 41-1177 57-1212(1321)
2 3g5u_A MCG1178, multidrug resi 100.0 7E-143 2E-147 1418.8 107.4 1118 41-1177 30-1166(1284)
3 4f4c_A Multidrug resistance pr 100.0 5.3E-86 1.8E-90 877.1 55.3 576 43-623 737-1317(1321)
4 3qf4_A ABC transporter, ATP-bi 100.0 1.3E-80 4.4E-85 763.9 71.0 568 46-622 11-578 (587)
5 3qf4_B Uncharacterized ABC tra 100.0 3.1E-80 1.1E-84 763.1 66.0 569 44-623 23-591 (598)
6 4a82_A Cystic fibrosis transme 100.0 9.5E-80 3.3E-84 756.6 66.4 569 47-621 3-575 (578)
7 2yl4_A ATP-binding cassette SU 100.0 2.8E-77 9.6E-82 738.0 74.5 574 46-623 7-584 (595)
8 3b5x_A Lipid A export ATP-bind 100.0 6.2E-77 2.1E-81 733.0 77.4 566 46-622 13-579 (582)
9 3b60_A Lipid A export ATP-bind 100.0 5.5E-77 1.9E-81 733.4 72.0 566 46-622 13-579 (582)
10 3g5u_A MCG1178, multidrug resi 100.0 7.1E-75 2.4E-79 768.6 58.0 580 44-625 691-1273(1284)
11 3qf4_A ABC transporter, ATP-bi 100.0 2.1E-60 7E-65 584.6 55.9 464 707-1177 11-474 (587)
12 3qf4_B Uncharacterized ABC tra 100.0 9.6E-60 3.3E-64 580.6 52.8 464 705-1177 23-486 (598)
13 4a82_A Cystic fibrosis transme 100.0 1.4E-59 4.6E-64 577.6 49.9 466 707-1177 2-472 (578)
14 3b5x_A Lipid A export ATP-bind 100.0 2.8E-58 9.4E-63 567.0 58.0 462 707-1177 13-475 (582)
15 2yl4_A ATP-binding cassette SU 100.0 3.4E-58 1.2E-62 567.6 57.0 468 707-1177 7-478 (595)
16 3b60_A Lipid A export ATP-bind 100.0 4E-58 1.4E-62 565.6 54.8 463 706-1177 12-475 (582)
17 3nh6_A ATP-binding cassette SU 100.0 2E-59 6.9E-64 523.1 26.7 277 344-624 15-291 (306)
18 2ff7_A Alpha-hemolysin translo 100.0 2E-50 6.8E-55 440.5 31.4 239 382-621 6-244 (247)
19 2ghi_A Transport protein; mult 100.0 1.2E-49 4.1E-54 437.7 28.5 239 382-622 16-254 (260)
20 2ixe_A Antigen peptide transpo 100.0 4.1E-49 1.4E-53 435.8 26.9 239 381-620 14-255 (271)
21 1mv5_A LMRA, multidrug resista 100.0 1.6E-49 5.5E-54 433.3 19.3 234 384-620 2-236 (243)
22 3gd7_A Fusion complex of cysti 100.0 7.5E-48 2.6E-52 443.1 25.9 237 378-617 14-250 (390)
23 2pze_A Cystic fibrosis transme 100.0 1.9E-46 6.6E-51 404.9 24.9 214 382-610 5-219 (229)
24 2cbz_A Multidrug resistance-as 100.0 1.4E-46 5E-51 407.7 23.2 223 383-621 3-228 (237)
25 3tui_C Methionine import ATP-b 100.0 3.7E-45 1.3E-49 413.9 24.8 230 382-618 23-262 (366)
26 3gfo_A Cobalt import ATP-bindi 100.0 6.1E-45 2.1E-49 401.5 21.9 219 383-610 7-234 (275)
27 3tif_A Uncharacterized ABC tra 100.0 3.9E-45 1.3E-49 395.9 18.8 216 384-607 2-232 (235)
28 1ji0_A ABC transporter; ATP bi 100.0 3.5E-44 1.2E-48 390.1 24.4 219 383-610 6-229 (240)
29 3fvq_A Fe(3+) IONS import ATP- 100.0 1E-43 3.5E-48 402.4 23.8 221 383-617 4-236 (359)
30 4g1u_C Hemin import ATP-bindin 100.0 1.5E-43 5E-48 389.9 23.6 213 383-609 11-237 (266)
31 2olj_A Amino acid ABC transpor 100.0 1.6E-43 5.4E-48 388.1 23.7 219 383-611 24-250 (263)
32 3rlf_A Maltose/maltodextrin im 100.0 1.4E-43 4.7E-48 403.9 22.3 224 383-618 3-232 (381)
33 1vpl_A ABC transporter, ATP-bi 100.0 4E-43 1.4E-47 383.7 21.9 217 382-609 14-235 (256)
34 1g6h_A High-affinity branched- 100.0 7.5E-43 2.6E-47 383.7 23.7 214 383-606 7-239 (257)
35 1b0u_A Histidine permease; ABC 100.0 5.8E-43 2E-47 385.0 22.6 220 383-612 6-245 (262)
36 2yyz_A Sugar ABC transporter, 100.0 1.3E-42 4.3E-47 395.3 25.1 222 383-616 3-230 (359)
37 2pcj_A ABC transporter, lipopr 100.0 4.8E-43 1.6E-47 377.0 20.4 211 383-603 4-222 (224)
38 2bbs_A Cystic fibrosis transme 100.0 5.5E-43 1.9E-47 389.0 21.1 209 381-609 38-247 (290)
39 2yz2_A Putative ABC transporte 100.0 1.3E-42 4.3E-47 383.6 22.8 215 384-610 3-228 (266)
40 2ihy_A ABC transporter, ATP-bi 100.0 7.3E-43 2.5E-47 386.7 20.4 217 382-609 20-252 (279)
41 2iw3_A Elongation factor 3A; a 100.0 7.3E-42 2.5E-46 428.4 31.7 196 383-608 435-634 (986)
42 2it1_A 362AA long hypothetical 100.0 1.3E-42 4.5E-47 395.5 22.4 222 383-616 3-230 (362)
43 1v43_A Sugar-binding transport 100.0 2.8E-42 9.7E-47 394.3 24.9 222 383-616 11-238 (372)
44 1z47_A CYSA, putative ABC-tran 100.0 1.6E-42 5.5E-47 393.2 22.6 223 382-615 13-241 (355)
45 2onk_A Molybdate/tungstate ABC 100.0 3.1E-42 1.1E-46 373.3 23.2 213 384-611 2-218 (240)
46 3d31_A Sulfate/molybdate ABC t 100.0 2.7E-42 9.2E-47 391.5 23.6 215 384-615 2-223 (348)
47 1oxx_K GLCV, glucose, ABC tran 100.0 2.2E-42 7.6E-47 394.0 21.6 224 383-616 3-237 (353)
48 2qi9_C Vitamin B12 import ATP- 100.0 5.8E-42 2E-46 372.9 23.1 208 383-609 4-222 (249)
49 1g29_1 MALK, maltose transport 100.0 4.7E-42 1.6E-46 393.6 22.2 222 383-616 3-236 (372)
50 3bk7_A ABC transporter ATP-bin 100.0 2.3E-42 7.8E-47 421.6 20.6 193 387-596 95-304 (607)
51 2d2e_A SUFC protein; ABC-ATPas 100.0 9.2E-42 3.2E-46 373.4 18.7 214 383-606 3-230 (250)
52 1yqt_A RNAse L inhibitor; ATP- 100.0 5.1E-42 1.8E-46 414.9 17.2 195 385-596 22-234 (538)
53 2pjz_A Hypothetical protein ST 100.0 1.6E-41 5.6E-46 372.1 18.9 207 384-609 2-215 (263)
54 2zu0_C Probable ATP-dependent 100.0 1.1E-40 3.7E-45 368.0 24.6 216 383-608 20-253 (267)
55 2nq2_C Hypothetical ABC transp 100.0 6.9E-41 2.4E-45 366.1 19.9 203 383-609 4-217 (253)
56 3ux8_A Excinuclease ABC, A sub 100.0 1.2E-40 4.3E-45 417.0 17.7 202 399-609 31-298 (670)
57 3ozx_A RNAse L inhibitor; ATP 100.0 1.1E-40 3.8E-45 401.6 16.6 191 388-596 4-213 (538)
58 1sgw_A Putative ABC transporte 100.0 1.8E-40 6E-45 352.3 15.9 195 383-599 10-211 (214)
59 3j16_B RLI1P; ribosome recycli 100.0 4E-38 1.4E-42 383.1 18.9 195 388-597 82-298 (608)
60 3nh6_A ATP-binding cassette SU 100.0 1.9E-34 6.4E-39 321.7 11.1 171 1003-1177 15-185 (306)
61 3bk7_A ABC transporter ATP-bin 100.0 2.1E-32 7.2E-37 333.8 17.3 199 383-609 357-563 (607)
62 1yqt_A RNAse L inhibitor; ATP- 100.0 1.7E-32 5.8E-37 331.7 16.1 199 383-609 287-493 (538)
63 3ozx_A RNAse L inhibitor; ATP 100.0 6.5E-32 2.2E-36 325.4 17.6 200 382-608 268-476 (538)
64 2v9p_A Replication protein E1; 100.0 1.5E-35 5.1E-40 329.0 -17.0 217 335-621 56-274 (305)
65 2iw3_A Elongation factor 3A; a 100.0 1.1E-31 3.8E-36 336.5 15.0 205 383-603 671-981 (986)
66 3j16_B RLI1P; ribosome recycli 100.0 7.7E-31 2.6E-35 319.1 16.7 198 387-610 350-560 (608)
67 3ux8_A Excinuclease ABC, A sub 100.0 7.9E-30 2.7E-34 319.2 14.1 202 399-612 335-643 (670)
68 2vf7_A UVRA2, excinuclease ABC 100.0 6.9E-29 2.3E-33 309.3 20.8 99 511-609 367-475 (842)
69 3pih_A Uvrabc system protein A 100.0 1.2E-28 4.2E-33 309.5 19.4 205 400-616 598-908 (916)
70 2vf7_A UVRA2, excinuclease ABC 99.9 8.2E-28 2.8E-32 299.6 15.8 211 382-611 501-829 (842)
71 2r6f_A Excinuclease ABC subuni 99.9 2.9E-27 9.7E-32 293.8 18.3 211 383-612 629-945 (972)
72 4aby_A DNA repair protein RECN 99.9 9.3E-27 3.2E-31 276.3 18.2 201 400-601 49-380 (415)
73 2ygr_A Uvrabc system protein A 99.9 1.2E-26 4E-31 289.5 18.7 211 382-611 646-962 (993)
74 2ff7_A Alpha-hemolysin translo 99.9 9.8E-27 3.3E-31 253.4 14.9 134 1041-1176 6-139 (247)
75 2npi_A Protein CLP1; CLP1-PCF1 99.9 3.2E-30 1.1E-34 304.3 -15.0 180 403-609 129-338 (460)
76 2ghi_A Transport protein; mult 99.9 8E-26 2.7E-30 248.2 14.0 134 1041-1176 16-149 (260)
77 1mv5_A LMRA, multidrug resista 99.9 2.8E-26 9.7E-31 249.7 10.3 132 1043-1176 2-133 (243)
78 2ixe_A Antigen peptide transpo 99.9 1.4E-25 4.7E-30 247.6 14.5 136 1040-1176 14-150 (271)
79 3pih_A Uvrabc system protein A 99.9 1.7E-24 5.7E-29 272.1 20.1 158 430-609 386-560 (916)
80 2r6f_A Excinuclease ABC subuni 99.9 3.2E-24 1.1E-28 266.5 21.6 149 437-608 433-599 (972)
81 3gd7_A Fusion complex of cysti 99.9 9.6E-25 3.3E-29 251.1 14.1 134 1039-1176 16-149 (390)
82 1e69_A Chromosome segregation 99.9 2E-24 6.7E-29 246.1 15.2 195 403-599 16-302 (322)
83 2ygr_A Uvrabc system protein A 99.9 1.5E-22 5.1E-27 252.7 26.5 134 470-609 465-617 (993)
84 3b85_A Phosphate starvation-in 99.9 5.4E-26 1.9E-30 240.3 -3.9 157 399-596 13-170 (208)
85 4gp7_A Metallophosphoesterase; 99.9 6.1E-24 2.1E-28 218.9 2.5 149 404-590 1-168 (171)
86 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 1.4E-22 4.8E-27 233.9 13.9 83 518-600 275-364 (365)
87 2pze_A Cystic fibrosis transme 99.9 1.6E-22 5.6E-27 217.8 13.2 120 1041-1176 5-124 (229)
88 3tif_A Uncharacterized ABC tra 99.9 5.6E-23 1.9E-27 222.2 8.2 122 1043-1164 2-137 (235)
89 1z6g_A Guanylate kinase; struc 99.9 5.6E-25 1.9E-29 235.9 -10.2 166 400-595 11-193 (218)
90 2cbz_A Multidrug resistance-as 99.9 3E-22 1E-26 216.8 10.5 118 1043-1176 4-121 (237)
91 3gfo_A Cobalt import ATP-bindi 99.9 1.7E-22 5.8E-27 222.5 8.5 128 1042-1171 7-143 (275)
92 1ye8_A Protein THEP1, hypothet 99.9 1.3E-23 4.3E-28 217.0 -1.6 147 414-600 2-159 (178)
93 4g1u_C Hemin import ATP-bindin 99.9 6E-22 2.1E-26 217.7 11.5 126 1042-1170 11-140 (266)
94 3tui_C Methionine import ATP-b 99.9 3.1E-22 1.1E-26 226.6 9.0 132 1041-1172 23-164 (366)
95 1ji0_A ABC transporter; ATP bi 99.9 4.2E-22 1.4E-26 216.2 9.2 99 1042-1143 6-106 (240)
96 2olj_A Amino acid ABC transpor 99.9 6E-22 2E-26 216.9 9.4 126 1042-1170 24-158 (263)
97 1vpl_A ABC transporter, ATP-bi 99.8 7.1E-22 2.4E-26 215.6 9.4 126 1041-1170 14-145 (256)
98 2yz2_A Putative ABC transporte 99.8 1.3E-21 4.4E-26 215.7 11.2 127 1043-1172 3-139 (266)
99 2pcj_A ABC transporter, lipopr 99.8 6.9E-22 2.3E-26 212.1 8.8 126 1042-1170 4-139 (224)
100 2pt7_A CAG-ALFA; ATPase, prote 99.8 1.8E-23 6E-28 237.6 -4.5 131 401-597 160-291 (330)
101 2qi9_C Vitamin B12 import ATP- 99.8 2E-21 6.9E-26 211.1 11.8 120 1043-1170 5-125 (249)
102 2ihy_A ABC transporter, ATP-bi 99.8 1.1E-21 3.9E-26 216.9 9.4 125 1042-1169 21-159 (279)
103 1sgw_A Putative ABC transporte 99.8 9.2E-22 3.1E-26 208.5 8.3 114 1042-1164 10-127 (214)
104 1g6h_A High-affinity branched- 99.8 2.5E-21 8.6E-26 212.4 10.1 125 1042-1169 7-151 (257)
105 1b0u_A Histidine permease; ABC 99.8 2.8E-21 9.5E-26 212.3 10.1 125 1043-1170 7-152 (262)
106 3fvq_A Fe(3+) IONS import ATP- 99.8 1.7E-21 5.8E-26 220.6 8.1 128 1042-1172 4-139 (359)
107 3rlf_A Maltose/maltodextrin im 99.8 2.1E-21 7.1E-26 221.3 8.5 126 1042-1172 3-134 (381)
108 2it1_A 362AA long hypothetical 99.8 4.2E-21 1.4E-25 218.6 8.8 125 1043-1172 4-134 (362)
109 1tq4_A IIGP1, interferon-induc 99.8 7E-23 2.4E-27 237.0 -6.4 167 399-590 36-247 (413)
110 1z47_A CYSA, putative ABC-tran 99.8 5.5E-21 1.9E-25 216.7 9.2 128 1041-1172 13-146 (355)
111 2yyz_A Sugar ABC transporter, 99.8 4.4E-21 1.5E-25 218.2 8.4 125 1043-1172 4-134 (359)
112 1v43_A Sugar-binding transport 99.8 9.4E-21 3.2E-25 216.5 10.7 125 1042-1171 11-141 (372)
113 3d31_A Sulfate/molybdate ABC t 99.8 6.3E-21 2.2E-25 216.2 8.7 124 1043-1172 2-128 (348)
114 2v9p_A Replication protein E1; 99.8 1.4E-22 4.7E-27 225.0 -5.2 158 975-1173 38-197 (305)
115 2bbs_A Cystic fibrosis transme 99.8 1.4E-20 4.7E-25 209.0 10.1 116 1040-1176 38-153 (290)
116 2onk_A Molybdate/tungstate ABC 99.8 8.2E-21 2.8E-25 205.3 7.3 120 1043-1170 2-125 (240)
117 2dpy_A FLII, flagellum-specifi 99.8 2.2E-22 7.5E-27 236.3 -5.9 195 382-610 130-345 (438)
118 1oxx_K GLCV, glucose, ABC tran 99.8 7E-21 2.4E-25 216.9 6.5 127 1043-1172 4-141 (353)
119 2d2e_A SUFC protein; ABC-ATPas 99.8 8.5E-21 2.9E-25 207.2 6.8 122 1043-1167 4-138 (250)
120 1g29_1 MALK, maltose transport 99.8 1.6E-20 5.6E-25 215.1 7.7 125 1042-1171 3-139 (372)
121 2o5v_A DNA replication and rep 99.8 2.7E-19 9.1E-24 204.0 14.6 81 522-607 265-354 (359)
122 2pjz_A Hypothetical protein ST 99.8 2.9E-20 1E-24 203.5 6.4 121 1043-1169 2-126 (263)
123 2gza_A Type IV secretion syste 99.8 5.8E-23 2E-27 236.8 -18.3 205 965-1177 52-282 (361)
124 2zu0_C Probable ATP-dependent 99.8 7E-20 2.4E-24 201.7 5.7 118 1042-1162 20-153 (267)
125 3sop_A Neuronal-specific septi 99.8 6.9E-21 2.4E-25 209.9 -2.6 147 414-585 4-154 (270)
126 3aez_A Pantothenate kinase; tr 99.8 1.5E-21 5.3E-26 219.4 -8.4 175 380-596 40-245 (312)
127 2nq2_C Hypothetical ABC transp 99.8 1.2E-19 4.3E-24 197.9 6.8 113 1043-1170 5-127 (253)
128 3b9q_A Chloroplast SRP recepto 99.8 2E-20 6.8E-25 209.4 -0.9 174 403-598 91-284 (302)
129 1znw_A Guanylate kinase, GMP k 99.7 1.2E-20 4.1E-25 200.9 -6.3 168 399-594 9-202 (207)
130 2f1r_A Molybdopterin-guanine d 99.7 1E-20 3.5E-25 193.0 -8.3 111 413-544 3-125 (171)
131 2og2_A Putative signal recogni 99.7 1.4E-19 4.8E-24 205.8 0.0 173 404-598 149-341 (359)
132 2i3b_A HCR-ntpase, human cance 99.7 7E-20 2.4E-24 190.4 -5.6 159 412-602 1-169 (189)
133 2obl_A ESCN; ATPase, hydrolase 99.7 4.3E-19 1.5E-23 202.1 -0.6 195 383-609 45-255 (347)
134 2eyu_A Twitching motility prot 99.7 1.2E-18 4.1E-23 191.0 2.3 132 400-595 15-147 (261)
135 4ad8_A DNA repair protein RECN 99.7 2.3E-17 7.8E-22 200.1 12.8 77 521-597 395-474 (517)
136 3qkt_A DNA double-strand break 99.7 7.2E-17 2.5E-21 184.9 15.5 76 519-594 245-327 (339)
137 2ewv_A Twitching motility prot 99.7 2.5E-20 8.7E-25 215.2 -14.1 175 400-583 126-353 (372)
138 1cr0_A DNA primase/helicase; R 99.7 2.4E-17 8.3E-22 185.7 9.4 181 400-598 23-237 (296)
139 1tf7_A KAIC; homohexamer, hexa 99.7 1.2E-18 4E-23 211.8 -4.9 169 398-597 24-211 (525)
140 2o8b_B DNA mismatch repair pro 99.7 2E-17 7E-22 212.1 5.9 172 382-606 749-939 (1022)
141 1tf7_A KAIC; homohexamer, hexa 99.7 1.1E-16 3.7E-21 194.5 11.9 152 406-597 275-444 (525)
142 1f2t_B RAD50 ABC-ATPase; DNA d 99.6 4.1E-16 1.4E-20 154.7 11.0 81 518-598 53-142 (148)
143 2jeo_A Uridine-cytidine kinase 99.6 9.4E-18 3.2E-22 183.4 -1.0 166 398-608 11-186 (245)
144 1lvg_A Guanylate kinase, GMP k 99.6 1.8E-19 6.1E-24 190.1 -14.7 158 410-595 2-173 (198)
145 1lw7_A Transcriptional regulat 99.6 3E-18 1E-22 198.7 -7.9 177 401-609 157-355 (365)
146 3thx_A DNA mismatch repair pro 99.6 1.8E-15 6.2E-20 191.4 15.0 167 382-607 630-811 (934)
147 1w1w_A Structural maintenance 99.6 5.8E-16 2E-20 183.6 9.4 73 522-594 333-410 (430)
148 1pzn_A RAD51, DNA repair and r 99.6 7.9E-17 2.7E-21 184.5 1.9 166 400-607 118-313 (349)
149 1ewq_A DNA mismatch repair pro 99.6 1.5E-16 5E-21 198.1 4.3 157 381-599 548-714 (765)
150 4a74_A DNA repair and recombin 99.6 3E-16 1E-20 169.8 4.9 152 408-596 21-200 (231)
151 3asz_A Uridine kinase; cytidin 99.6 5.3E-18 1.8E-22 181.1 -9.3 140 409-581 3-161 (211)
152 3szr_A Interferon-induced GTP- 99.6 4E-17 1.4E-21 200.5 -4.4 190 383-608 10-236 (608)
153 3jvv_A Twitching mobility prot 99.6 6.7E-16 2.3E-20 176.2 3.9 147 387-596 92-246 (356)
154 1rj9_A FTSY, signal recognitio 99.5 1.6E-15 5.4E-20 169.6 5.2 151 411-583 101-260 (304)
155 2gza_A Type IV secretion syste 99.5 5.5E-17 1.9E-21 186.9 -8.0 149 385-536 137-301 (361)
156 3kta_B Chromosome segregation 99.5 1.3E-14 4.4E-19 147.8 10.2 79 520-598 62-146 (173)
157 2ehv_A Hypothetical protein PH 99.5 5E-16 1.7E-20 170.4 -0.4 181 384-595 7-207 (251)
158 2qag_C Septin-7; cell cycle, c 99.5 6.8E-16 2.3E-20 179.4 -0.8 166 382-584 10-180 (418)
159 2qnr_A Septin-2, protein NEDD5 99.5 4.4E-16 1.5E-20 174.8 -2.7 162 387-582 2-168 (301)
160 1pui_A ENGB, probable GTP-bind 99.5 4.8E-16 1.7E-20 165.6 -2.4 169 384-570 4-198 (210)
161 1odf_A YGR205W, hypothetical 3 99.5 1.3E-16 4.6E-21 177.2 -7.6 129 411-557 30-169 (290)
162 2w0m_A SSO2452; RECA, SSPF, un 99.5 1.8E-14 6.3E-19 156.0 7.2 166 399-597 9-193 (235)
163 3thx_B DNA mismatch repair pro 99.5 1.7E-14 5.7E-19 182.0 6.4 168 382-598 639-814 (918)
164 2f1r_A Molybdopterin-guanine d 99.5 4.1E-15 1.4E-19 151.6 0.2 87 1072-1177 3-101 (171)
165 1wb9_A DNA mismatch repair pro 99.4 2.9E-14 1E-18 178.6 4.5 168 382-601 576-750 (800)
166 1s96_A Guanylate kinase, GMP k 99.4 8.7E-15 3E-19 155.9 -0.5 143 407-609 11-160 (219)
167 1nlf_A Regulatory protein REPA 99.4 3.7E-13 1.2E-17 150.0 11.9 151 408-584 26-184 (279)
168 2qag_B Septin-6, protein NEDD5 99.4 1.4E-14 4.9E-19 167.1 -2.2 177 384-578 17-216 (427)
169 2pt7_A CAG-ALFA; ATPase, prote 99.4 1.7E-15 5.9E-20 171.8 -10.2 167 976-1158 75-260 (330)
170 1z6g_A Guanylate kinase; struc 99.4 5.2E-14 1.8E-18 150.5 1.4 93 1059-1160 11-115 (218)
171 1htw_A HI0065; nucleotide-bind 99.4 5.8E-15 2E-19 148.5 -5.8 90 1044-1142 9-99 (158)
172 2cvh_A DNA repair and recombin 99.4 1.2E-12 4.2E-17 140.2 11.1 151 400-596 7-185 (220)
173 1lvg_A Guanylate kinase, GMP k 99.4 3.4E-14 1.2E-18 149.5 -1.1 96 1068-1174 1-109 (198)
174 1nij_A Hypothetical protein YJ 99.4 1.9E-15 6.5E-20 171.2 -11.5 153 413-582 5-190 (318)
175 3c8u_A Fructokinase; YP_612366 99.4 2.2E-15 7.4E-20 160.3 -10.5 138 409-583 19-160 (208)
176 1zp6_A Hypothetical protein AT 99.3 1.4E-14 4.8E-19 151.8 -5.5 136 408-565 5-144 (191)
177 1lw7_A Transcriptional regulat 99.3 4.8E-14 1.6E-18 163.3 -2.8 113 1060-1175 157-279 (365)
178 2eyu_A Twitching motility prot 99.3 1.8E-13 6E-18 149.9 1.1 102 1043-1159 6-120 (261)
179 3aez_A Pantothenate kinase; tr 99.3 9.6E-14 3.3E-18 155.9 -2.7 81 1039-1141 40-143 (312)
180 2dpy_A FLII, flagellum-specifi 99.3 2.2E-13 7.6E-18 159.8 -1.1 98 1041-1141 130-237 (438)
181 1n0w_A DNA repair protein RAD5 99.3 3.2E-12 1.1E-16 139.2 7.8 146 408-596 20-209 (243)
182 2ewv_A Twitching motility prot 99.3 7.3E-13 2.5E-17 152.8 2.2 95 1059-1161 126-233 (372)
183 2npi_A Protein CLP1; CLP1-PCF1 99.2 1E-13 3.4E-18 163.6 -7.1 83 1041-1142 117-205 (460)
184 2yhs_A FTSY, cell division pro 99.2 6E-12 2E-16 146.8 6.8 150 402-579 283-447 (503)
185 1htw_A HI0065; nucleotide-bind 99.2 7.7E-13 2.6E-17 132.9 -2.6 86 388-482 12-97 (158)
186 2qm8_A GTPase/ATPase; G protei 99.2 4.3E-13 1.5E-17 152.7 -5.1 178 385-569 31-259 (337)
187 3auy_A DNA double-strand break 99.2 3.7E-11 1.3E-15 139.2 10.1 74 521-594 279-359 (371)
188 3b9q_A Chloroplast SRP recepto 99.2 7.9E-12 2.7E-16 139.6 3.7 82 1061-1142 90-179 (302)
189 1p9r_A General secretion pathw 99.2 6.8E-14 2.3E-18 162.8 -13.9 128 401-545 158-314 (418)
190 2bdt_A BH3686; alpha-beta prot 99.2 3.8E-15 1.3E-19 155.9 -22.3 162 412-608 2-183 (189)
191 3sop_A Neuronal-specific septi 99.2 5.4E-12 1.9E-16 138.8 1.8 99 1073-1174 4-105 (270)
192 2rcn_A Probable GTPase ENGC; Y 99.2 2.3E-11 7.7E-16 137.8 6.7 121 401-537 205-328 (358)
193 2oap_1 GSPE-2, type II secreti 99.1 1.9E-13 6.5E-18 163.4 -11.1 171 400-586 248-455 (511)
194 2bbw_A Adenylate kinase 4, AK4 99.1 1.6E-12 5.4E-17 142.0 -3.3 157 411-595 26-218 (246)
195 1tq4_A IIGP1, interferon-induc 99.1 2.2E-12 7.4E-17 149.4 -2.8 92 1059-1163 37-148 (413)
196 3lda_A DNA repair protein RAD5 99.1 4.5E-11 1.5E-15 138.2 8.1 147 408-597 174-364 (400)
197 4e22_A Cytidylate kinase; P-lo 99.1 1.1E-11 3.7E-16 135.6 1.1 103 1059-1172 18-138 (252)
198 1sxj_E Activator 1 40 kDa subu 99.1 5.4E-11 1.8E-15 137.4 6.7 138 414-584 38-177 (354)
199 2qm8_A GTPase/ATPase; G protei 99.1 2.2E-12 7.5E-17 146.9 -4.9 87 1043-1132 30-120 (337)
200 2og2_A Putative signal recogni 99.1 2E-11 6.7E-16 138.8 2.9 81 1062-1142 148-236 (359)
201 1sq5_A Pantothenate kinase; P- 99.1 7.3E-12 2.5E-16 141.1 -0.8 92 1040-1141 35-151 (308)
202 2kjq_A DNAA-related protein; s 99.1 1.1E-10 3.7E-15 116.4 7.3 91 401-580 30-124 (149)
203 3e70_C DPA, signal recognition 99.1 1.8E-10 6.3E-15 129.8 10.0 144 409-580 126-278 (328)
204 2yhs_A FTSY, cell division pro 99.1 2.6E-11 8.9E-16 141.4 3.1 81 1062-1142 284-371 (503)
205 3b85_A Phosphate starvation-in 99.1 6.8E-12 2.3E-16 132.3 -2.1 63 1058-1128 13-75 (208)
206 2qag_B Septin-6, protein NEDD5 99.1 6E-12 2E-16 145.2 -2.8 89 1042-1143 16-107 (427)
207 1znw_A Guanylate kinase, GMP k 99.0 1.2E-11 4.2E-16 131.1 -1.9 75 1058-1139 9-85 (207)
208 1u0l_A Probable GTPase ENGC; p 99.0 5.4E-11 1.8E-15 133.5 1.8 106 1066-1172 164-292 (301)
209 2jeo_A Uridine-cytidine kinase 99.0 6.4E-11 2.2E-15 129.0 2.1 71 1057-1141 11-81 (245)
210 3ec2_A DNA replication protein 99.0 2.2E-10 7.5E-15 118.4 5.8 111 406-582 32-144 (180)
211 1rj9_A FTSY, signal recognitio 99.0 3.3E-10 1.1E-14 126.5 6.1 73 1069-1141 100-179 (304)
212 2yv5_A YJEQ protein; hydrolase 99.0 4.9E-11 1.7E-15 133.7 -0.7 115 408-535 161-300 (302)
213 2x8a_A Nuclear valosin-contain 99.0 1E-12 3.5E-17 145.4 -14.6 129 400-551 34-164 (274)
214 1sq5_A Pantothenate kinase; P- 98.9 1.3E-11 4.4E-16 139.2 -7.3 140 381-555 35-199 (308)
215 3szr_A Interferon-induced GTP- 98.9 3.8E-11 1.3E-15 147.5 -3.8 96 1042-1141 10-120 (608)
216 3asz_A Uridine kinase; cytidin 98.9 3.1E-10 1.1E-14 120.5 2.1 78 1068-1167 3-85 (211)
217 3euj_A Chromosome partition pr 98.9 3.6E-10 1.2E-14 132.7 2.5 80 1044-1129 8-95 (483)
218 3ney_A 55 kDa erythrocyte memb 98.9 6.6E-10 2.2E-14 115.1 3.5 82 1066-1157 14-108 (197)
219 1cke_A CK, MSSA, protein (cyti 98.8 2.3E-10 8E-15 123.0 -0.7 96 1071-1174 5-118 (227)
220 2yv5_A YJEQ protein; hydrolase 98.8 5.8E-10 2E-14 125.0 2.1 101 1067-1170 161-286 (302)
221 2obl_A ESCN; ATPase, hydrolase 98.8 3.5E-10 1.2E-14 128.7 0.0 65 1042-1109 45-109 (347)
222 3lnc_A Guanylate kinase, GMP k 98.8 7.4E-12 2.5E-16 135.3 -13.5 37 400-436 15-52 (231)
223 1s96_A Guanylate kinase, GMP k 98.8 2.7E-10 9.3E-15 121.1 -1.2 90 1065-1158 10-107 (219)
224 1udx_A The GTP-binding protein 98.8 6.3E-10 2.2E-14 129.2 1.5 153 402-579 147-306 (416)
225 1pui_A ENGB, probable GTP-bind 98.8 4.9E-10 1.7E-14 118.8 -0.0 84 1043-1132 4-110 (210)
226 3e70_C DPA, signal recognition 98.8 1.7E-09 5.9E-14 121.8 4.0 76 1067-1142 125-207 (328)
227 1u0l_A Probable GTPase ENGC; p 98.8 6.9E-10 2.4E-14 124.4 0.3 102 407-509 164-289 (301)
228 2rcn_A Probable GTPase ENGC; Y 98.8 2E-10 6.8E-15 130.1 -4.3 101 1060-1169 205-312 (358)
229 2qag_C Septin-7; cell cycle, c 98.8 8.6E-10 3E-14 128.1 0.8 90 1041-1143 10-100 (418)
230 1kgd_A CASK, peripheral plasma 98.8 1.5E-09 5E-14 112.2 2.5 81 1069-1157 3-94 (180)
231 4aby_A DNA repair protein RECN 98.8 1.7E-09 5.7E-14 127.7 3.2 81 1060-1141 50-169 (415)
232 1zp6_A Hypothetical protein AT 98.8 1.8E-09 6.3E-14 112.5 2.9 70 1067-1141 5-74 (191)
233 3tr0_A Guanylate kinase, GMP k 98.8 2.2E-09 7.6E-14 113.3 3.0 71 1065-1139 1-72 (205)
234 1p9r_A General secretion pathw 98.8 4.5E-10 1.5E-14 130.7 -2.7 117 1043-1164 144-288 (418)
235 1odf_A YGR205W, hypothetical 3 98.7 3.4E-10 1.2E-14 125.6 -3.7 91 1069-1175 29-121 (290)
236 3lnc_A Guanylate kinase, GMP k 98.7 2.6E-09 8.8E-14 115.2 2.6 78 1059-1142 15-105 (231)
237 1pzn_A RAD51, DNA repair and r 98.7 2.1E-09 7.3E-14 122.8 2.0 106 1047-1168 112-225 (349)
238 3euj_A Chromosome partition pr 98.7 2.8E-09 9.6E-14 125.1 2.9 54 400-454 18-71 (483)
239 1t9h_A YLOQ, probable GTPase E 98.7 1.4E-09 4.9E-14 120.8 0.2 97 1066-1164 168-288 (307)
240 1cke_A CK, MSSA, protein (cyti 98.7 2.5E-10 8.5E-15 122.8 -6.1 127 412-550 5-150 (227)
241 2px0_A Flagellar biosynthesis 98.7 1.6E-08 5.6E-13 112.5 8.3 138 410-600 103-246 (296)
242 1ls1_A Signal recognition part 98.7 1.5E-08 5.2E-13 112.8 8.1 132 384-568 77-209 (295)
243 1vma_A Cell division protein F 98.7 8.5E-09 2.9E-13 115.0 5.8 110 406-567 98-210 (306)
244 2oap_1 GSPE-2, type II secreti 98.7 4.3E-09 1.5E-13 125.7 3.3 98 1059-1160 248-355 (511)
245 3c8u_A Fructokinase; YP_612366 98.7 1.3E-09 4.6E-14 115.3 -1.7 53 1068-1139 19-71 (208)
246 4a74_A DNA repair and recombin 98.6 1.1E-08 3.9E-13 109.9 4.4 88 1045-1143 4-98 (231)
247 4gp7_A Metallophosphoesterase; 98.6 1.1E-08 3.9E-13 104.4 3.9 30 1063-1092 1-30 (171)
248 3tr0_A Guanylate kinase, GMP k 98.6 5E-09 1.7E-13 110.5 0.2 72 406-481 1-73 (205)
249 2i3b_A HCR-ntpase, human cance 98.6 3.2E-09 1.1E-13 110.0 -1.5 54 1071-1128 1-54 (189)
250 1in4_A RUVB, holliday junction 98.6 2.1E-10 7.2E-15 130.9 -11.5 146 399-569 31-193 (334)
251 1iy2_A ATP-dependent metallopr 98.6 1.5E-10 5E-15 128.8 -12.7 135 386-549 52-194 (278)
252 1qhl_A Protein (cell division 98.6 1.2E-09 4E-14 116.2 -5.3 75 1042-1127 9-91 (227)
253 4e22_A Cytidylate kinase; P-lo 98.6 3.5E-09 1.2E-13 115.6 -2.2 72 410-481 25-114 (252)
254 3a00_A Guanylate kinase, GMP k 98.6 1.6E-08 5.6E-13 104.9 2.5 78 1071-1158 1-91 (186)
255 2zr9_A Protein RECA, recombina 98.6 1.7E-07 5.9E-12 106.7 11.1 35 408-442 57-91 (349)
256 1ixz_A ATP-dependent metallopr 98.6 1.7E-10 5.7E-15 126.5 -13.4 137 385-550 27-171 (254)
257 3jvv_A Twitching mobility prot 98.5 2.2E-08 7.4E-13 114.2 3.3 107 1046-1157 92-215 (356)
258 1t9h_A YLOQ, probable GTPase E 98.5 9.9E-09 3.4E-13 114.0 0.2 73 407-481 168-248 (307)
259 1nij_A Hypothetical protein YJ 98.5 7.5E-09 2.6E-13 117.0 -0.8 71 1072-1142 5-102 (318)
260 2qnr_A Septin-2, protein NEDD5 98.5 1.2E-08 4.1E-13 114.2 0.6 84 1046-1142 2-87 (301)
261 3a00_A Guanylate kinase, GMP k 98.5 5.5E-09 1.9E-13 108.5 -2.1 127 412-548 1-169 (186)
262 1ni3_A YCHF GTPase, YCHF GTP-b 98.5 9.4E-11 3.2E-15 134.7 -17.5 166 408-605 16-209 (392)
263 3k1j_A LON protease, ATP-depen 98.5 5.4E-09 1.8E-13 128.9 -3.7 157 399-567 47-227 (604)
264 1e69_A Chromosome segregation 98.5 5.4E-08 1.8E-12 110.3 4.9 91 1042-1142 5-146 (322)
265 2dr3_A UPF0273 protein PH0284; 98.5 7E-08 2.4E-12 104.8 5.2 67 529-595 115-196 (247)
266 1qhl_A Protein (cell division 98.5 4.3E-09 1.5E-13 111.9 -4.5 75 383-468 9-91 (227)
267 2ius_A DNA translocase FTSK; n 98.5 9.5E-09 3.3E-13 121.5 -2.1 159 404-582 159-343 (512)
268 2j41_A Guanylate kinase; GMP, 98.5 4E-08 1.4E-12 103.6 2.7 85 1066-1158 1-96 (207)
269 2ehv_A Hypothetical protein PH 98.5 3E-08 1E-12 108.0 1.7 83 1043-1131 7-91 (251)
270 1cr0_A DNA primase/helicase; R 98.4 3.5E-08 1.2E-12 110.6 1.2 68 1059-1129 23-91 (296)
271 1oix_A RAS-related protein RAB 98.4 2.6E-08 9E-13 103.8 -0.1 141 414-567 31-188 (191)
272 3ney_A 55 kDa erythrocyte memb 98.4 4E-08 1.4E-12 101.7 1.1 74 406-485 13-99 (197)
273 2qt1_A Nicotinamide riboside k 98.4 2.5E-08 8.4E-13 105.5 -0.6 78 1063-1167 13-90 (207)
274 2x8a_A Nuclear valosin-contain 98.4 3.6E-08 1.2E-12 108.8 0.4 80 1059-1142 34-115 (274)
275 3nwj_A ATSK2; P loop, shikimat 98.4 3.1E-08 1E-12 107.2 -0.5 52 1042-1095 17-72 (250)
276 4eun_A Thermoresistant glucoki 98.4 1.6E-07 5.5E-12 98.6 4.2 70 1065-1140 23-94 (200)
277 3uie_A Adenylyl-sulfate kinase 98.4 2.8E-08 9.5E-13 104.4 -2.0 52 1059-1111 13-66 (200)
278 2r6a_A DNAB helicase, replicat 98.4 3.4E-07 1.2E-11 108.8 7.0 177 400-598 191-401 (454)
279 3tau_A Guanylate kinase, GMP k 98.3 1.2E-07 4.1E-12 100.2 2.5 70 1069-1142 6-86 (208)
280 2dy1_A Elongation factor G; tr 98.3 1.4E-07 4.7E-12 117.1 3.0 135 406-584 3-139 (665)
281 3vaa_A Shikimate kinase, SK; s 98.3 2.5E-07 8.4E-12 97.0 3.3 45 1051-1095 5-49 (199)
282 2o8b_B DNA mismatch repair pro 98.3 3.4E-07 1.2E-11 117.7 5.2 74 1041-1139 749-835 (1022)
283 1ye8_A Protein THEP1, hypothet 98.3 1.2E-07 3.9E-12 97.4 0.5 51 1073-1128 2-52 (178)
284 1kgd_A CASK, peripheral plasma 98.3 8.1E-08 2.8E-12 99.0 -0.7 71 410-484 3-84 (180)
285 3ice_A Transcription terminati 98.3 1.7E-07 6E-12 104.8 1.9 81 1039-1121 130-226 (422)
286 1zu4_A FTSY; GTPase, signal re 98.2 2.7E-07 9.2E-12 103.7 2.3 81 1060-1140 94-185 (320)
287 2bdt_A BH3686; alpha-beta prot 98.2 2.7E-07 9.3E-12 95.8 2.2 61 1071-1140 2-63 (189)
288 1ewq_A DNA mismatch repair pro 98.2 2.9E-07 9.9E-12 114.8 2.8 84 1040-1142 548-635 (765)
289 1svm_A Large T antigen; AAA+ f 98.2 1.4E-08 4.9E-13 116.2 -9.0 137 400-551 157-312 (377)
290 2vp4_A Deoxynucleoside kinase; 98.2 2E-07 6.7E-12 100.2 0.1 65 1064-1132 13-87 (230)
291 2qt1_A Nicotinamide riboside k 98.2 2.9E-07 9.8E-12 97.2 1.0 51 407-483 16-66 (207)
292 2dy1_A Elongation factor G; tr 98.2 2.5E-07 8.4E-12 114.8 0.3 106 1065-1173 3-112 (665)
293 2ce7_A Cell division protein F 98.2 2.6E-06 8.9E-11 100.5 9.0 114 400-584 39-167 (476)
294 2bbw_A Adenylate kinase 4, AK4 98.2 2.4E-07 8.1E-12 100.7 -0.3 68 1070-1141 26-97 (246)
295 2f9l_A RAB11B, member RAS onco 98.2 6.5E-07 2.2E-11 93.7 3.0 36 531-568 130-165 (199)
296 1in4_A RUVB, holliday junction 98.1 2.2E-08 7.6E-13 114.1 -9.1 94 1043-1140 19-123 (334)
297 1n0w_A DNA repair protein RAD5 98.1 1.1E-06 3.8E-11 95.0 4.5 80 1067-1155 20-107 (243)
298 3cr8_A Sulfate adenylyltranfer 98.1 1.9E-07 6.6E-12 112.2 -2.7 90 1066-1160 364-468 (552)
299 3lda_A DNA repair protein RAD5 98.1 1.7E-06 5.7E-11 100.0 4.3 70 1067-1143 174-251 (400)
300 3nwj_A ATSK2; P loop, shikimat 98.1 4.4E-07 1.5E-11 98.1 -0.5 52 383-436 17-72 (250)
301 1svm_A Large T antigen; AAA+ f 98.0 1.3E-06 4.3E-11 100.1 2.7 65 1059-1131 157-221 (377)
302 3t34_A Dynamin-related protein 98.0 2.7E-06 9.2E-11 97.9 5.4 45 400-447 25-71 (360)
303 1iy2_A ATP-dependent metallopr 98.0 6.1E-07 2.1E-11 99.4 -0.1 90 1044-1140 51-142 (278)
304 3kta_A Chromosome segregation 98.0 6.1E-07 2.1E-11 92.5 -0.1 99 1062-1162 18-136 (182)
305 2dhr_A FTSH; AAA+ protein, hex 98.0 1.6E-07 5.6E-12 111.4 -5.0 128 399-552 53-188 (499)
306 2qtf_A Protein HFLX, GTP-bindi 98.0 2E-06 6.9E-11 98.5 4.1 143 414-569 181-352 (364)
307 1ixz_A ATP-dependent metallopr 98.0 6.6E-07 2.3E-11 97.7 -0.0 90 1043-1139 26-117 (254)
308 3vaa_A Shikimate kinase, SK; s 98.0 1.9E-06 6.3E-11 90.3 2.8 45 392-436 5-49 (199)
309 4eun_A Thermoresistant glucoki 98.0 1.1E-06 3.7E-11 92.2 0.5 59 406-469 23-81 (200)
310 2w0m_A SSO2452; RECA, SSPF, un 98.0 1.3E-06 4.4E-11 93.8 0.9 70 1059-1128 10-80 (235)
311 3uie_A Adenylyl-sulfate kinase 98.0 3.2E-07 1.1E-11 96.3 -3.9 51 399-450 12-64 (200)
312 2j41_A Guanylate kinase; GMP, 97.9 2.7E-06 9.2E-11 89.5 2.9 35 407-441 1-35 (207)
313 1zu4_A FTSY; GTPase, signal re 97.9 3.1E-06 1.1E-10 95.0 3.0 68 402-469 95-172 (320)
314 1knq_A Gluconate kinase; ALFA/ 97.9 5.1E-06 1.7E-10 84.9 3.8 56 1069-1130 6-62 (175)
315 3cr8_A Sulfate adenylyltranfer 97.9 9.9E-07 3.4E-11 106.0 -2.1 70 408-482 365-446 (552)
316 3kta_A Chromosome segregation 97.9 4E-06 1.4E-10 86.3 2.3 66 403-469 18-89 (182)
317 3hr8_A Protein RECA; alpha and 97.9 1.5E-05 5E-10 90.4 7.0 59 408-469 57-116 (356)
318 2kjq_A DNAA-related protein; s 97.8 8.6E-06 3E-10 80.7 3.5 47 1060-1112 30-78 (149)
319 3tqc_A Pantothenate kinase; bi 97.8 5.1E-07 1.8E-11 100.9 -6.4 124 400-555 74-211 (321)
320 1ls1_A Signal recognition part 97.7 5.1E-06 1.7E-10 92.4 0.9 63 1043-1112 77-139 (295)
321 1rz3_A Hypothetical protein rb 97.7 9.9E-06 3.4E-10 84.8 3.1 47 1067-1113 18-64 (201)
322 2xau_A PRE-mRNA-splicing facto 97.7 2.7E-05 9.3E-10 98.1 7.1 64 522-585 190-256 (773)
323 2e87_A Hypothetical protein PH 97.7 7.7E-05 2.6E-09 85.5 10.0 59 521-580 230-289 (357)
324 3tqc_A Pantothenate kinase; bi 97.7 1.1E-05 3.8E-10 90.1 2.4 57 1058-1114 73-137 (321)
325 3ice_A Transcription terminati 97.7 8.5E-06 2.9E-10 91.3 0.9 55 381-437 131-199 (422)
326 3tau_A Guanylate kinase, GMP k 97.7 5.8E-06 2E-10 87.1 -0.4 29 410-438 6-34 (208)
327 4a1f_A DNAB helicase, replicat 97.6 6.5E-05 2.2E-09 84.4 7.9 107 401-554 35-141 (338)
328 1jjv_A Dephospho-COA kinase; P 97.6 2.9E-05 9.8E-10 81.6 4.5 69 523-594 60-131 (206)
329 2z43_A DNA repair and recombin 97.6 4E-05 1.4E-09 86.6 5.4 29 408-436 103-131 (324)
330 2cvh_A DNA repair and recombin 97.6 2E-05 7E-10 83.5 2.7 57 1059-1119 7-64 (220)
331 2pez_A Bifunctional 3'-phospho 97.6 1.2E-05 4.1E-10 82.4 0.6 42 1069-1111 3-46 (179)
332 1vma_A Cell division protein F 97.5 2.3E-05 7.9E-10 87.2 2.4 64 1064-1127 97-166 (306)
333 1udx_A The GTP-binding protein 97.5 2.7E-05 9.1E-10 90.4 2.8 34 1061-1094 147-180 (416)
334 1oix_A RAS-related protein RAB 97.5 1.4E-05 4.7E-10 82.9 0.2 38 1073-1110 31-79 (191)
335 3r20_A Cytidylate kinase; stru 97.5 9.6E-06 3.3E-10 86.2 -1.3 70 1071-1140 9-96 (233)
336 1sxj_E Activator 1 40 kDa subu 97.5 3.7E-05 1.3E-09 88.1 3.3 58 1072-1131 37-95 (354)
337 2dhr_A FTSH; AAA+ protein, hex 97.5 5.5E-05 1.9E-09 89.8 4.7 91 1043-1140 41-133 (499)
338 1wb9_A DNA mismatch repair pro 97.5 2.9E-05 1E-09 97.4 2.3 86 1041-1143 576-667 (800)
339 3kl4_A SRP54, signal recogniti 97.5 0.00014 4.9E-09 84.3 7.8 39 411-449 96-134 (433)
340 2qor_A Guanylate kinase; phosp 97.5 2.3E-05 7.8E-10 82.3 1.0 65 1067-1134 8-83 (204)
341 1rz3_A Hypothetical protein rb 97.4 3.3E-05 1.1E-09 80.8 2.0 46 408-453 18-63 (201)
342 2ffh_A Protein (FFH); SRP54, s 97.4 0.00042 1.5E-08 80.3 10.7 149 403-579 91-246 (425)
343 1f6b_A SAR1; gtpases, N-termin 97.4 4.3E-05 1.5E-09 79.7 1.7 58 1049-1109 6-71 (198)
344 1fnn_A CDC6P, cell division co 97.4 0.00074 2.5E-08 78.1 12.4 45 539-584 124-172 (389)
345 2f9l_A RAB11B, member RAS onco 97.4 4.9E-05 1.7E-09 79.2 2.0 37 1073-1109 7-54 (199)
346 1ni3_A YCHF GTPase, YCHF GTP-b 97.4 8.1E-05 2.8E-09 85.4 4.0 41 1067-1107 16-68 (392)
347 2vp4_A Deoxynucleoside kinase; 97.3 7E-05 2.4E-09 80.1 2.9 40 407-450 15-54 (230)
348 3thx_A DNA mismatch repair pro 97.3 0.00012 4.1E-09 93.1 5.2 61 1041-1101 630-700 (934)
349 2jaq_A Deoxyguanosine kinase; 97.3 2.8E-05 9.7E-10 81.3 -0.9 69 1073-1141 2-86 (205)
350 3t34_A Dynamin-related protein 97.3 5.3E-05 1.8E-09 87.0 1.3 44 1059-1105 25-70 (360)
351 2p67_A LAO/AO transport system 97.3 4.7E-05 1.6E-09 86.6 0.7 53 1059-1111 44-96 (341)
352 3ec2_A DNA replication protein 97.3 4.6E-05 1.6E-09 78.1 0.5 37 1065-1101 32-68 (180)
353 2px0_A Flagellar biosynthesis 97.3 9.3E-05 3.2E-09 82.1 2.9 45 1069-1113 103-148 (296)
354 1mky_A Probable GTP-binding pr 97.2 0.00011 3.6E-09 86.8 3.2 61 1072-1132 181-253 (439)
355 1knq_A Gluconate kinase; ALFA/ 97.2 0.0001 3.5E-09 75.1 2.6 38 410-451 6-43 (175)
356 3m6a_A ATP-dependent protease 97.2 6.7E-05 2.3E-09 90.8 1.3 82 1043-1128 84-165 (543)
357 1uf9_A TT1252 protein; P-loop, 97.2 4.9E-05 1.7E-09 79.4 0.1 74 1072-1157 9-86 (203)
358 1m7g_A Adenylylsulfate kinase; 97.2 5.8E-05 2E-09 79.6 0.7 45 1066-1110 20-66 (211)
359 3k1j_A LON protease, ATP-depen 97.2 8.2E-05 2.8E-09 91.5 1.7 65 1059-1128 48-113 (604)
360 4eaq_A DTMP kinase, thymidylat 97.2 0.00021 7.2E-09 76.2 4.2 44 1061-1105 13-59 (229)
361 2www_A Methylmalonic aciduria 97.1 0.00013 4.3E-09 83.2 2.4 44 1069-1112 72-115 (349)
362 1sxj_C Activator 1 40 kDa subu 97.1 0.0001 3.4E-09 84.0 1.4 44 399-442 31-76 (340)
363 4ad8_A DNA repair protein RECN 97.1 0.00011 3.8E-09 88.6 1.7 71 1060-1131 50-159 (517)
364 1m2o_B GTP-binding protein SAR 97.1 0.00024 8.3E-09 73.3 3.6 49 1060-1109 13-69 (190)
365 1kag_A SKI, shikimate kinase I 97.1 0.00023 8E-09 72.1 3.2 35 1070-1108 3-37 (173)
366 3thx_B DNA mismatch repair pro 97.0 0.00016 5.5E-09 91.6 2.2 51 1041-1093 639-695 (918)
367 1v5w_A DMC1, meiotic recombina 97.0 0.00038 1.3E-08 79.1 4.9 28 408-435 118-145 (343)
368 2gj8_A MNME, tRNA modification 97.0 0.00031 1.1E-08 71.2 3.6 41 1069-1109 2-54 (172)
369 3lxx_A GTPase IMAP family memb 97.0 0.0039 1.3E-07 66.8 12.4 28 414-441 31-58 (239)
370 3bh0_A DNAB-like replicative h 97.0 0.00045 1.5E-08 77.5 5.0 108 400-552 56-163 (315)
371 2ffh_A Protein (FFH); SRP54, s 97.0 0.0003 1E-08 81.5 3.3 65 1043-1114 77-141 (425)
372 3b9p_A CG5977-PA, isoform A; A 97.0 0.0025 8.4E-08 70.8 10.7 32 524-555 97-128 (297)
373 2dr3_A UPF0273 protein PH0284; 96.9 0.00016 5.3E-09 78.1 0.5 68 1060-1128 11-80 (247)
374 1w1w_A Structural maintenance 96.9 0.00044 1.5E-08 81.4 4.4 50 1042-1100 6-55 (430)
375 3hr8_A Protein RECA; alpha and 96.9 0.00033 1.1E-08 79.3 3.1 62 1067-1131 57-119 (356)
376 3m6a_A ATP-dependent protease 96.9 0.00015 5.2E-09 87.7 0.3 47 400-447 97-143 (543)
377 2o5v_A DNA replication and rep 96.9 0.00051 1.7E-08 78.0 4.5 33 1060-1093 16-48 (359)
378 1ypw_A Transitional endoplasmi 96.9 0.0002 6.9E-09 90.7 1.3 32 407-438 233-264 (806)
379 2p67_A LAO/AO transport system 96.9 0.00015 5.1E-09 82.4 -0.1 48 400-447 44-91 (341)
380 2z4s_A Chromosomal replication 96.8 0.0012 4.2E-08 77.6 7.4 44 538-581 191-237 (440)
381 1ex7_A Guanylate kinase; subst 96.8 0.00044 1.5E-08 70.8 3.0 74 1074-1157 4-90 (186)
382 2pez_A Bifunctional 3'-phospho 96.8 0.00025 8.4E-09 72.5 0.8 38 410-448 3-42 (179)
383 1lv7_A FTSH; alpha/beta domain 96.8 0.0046 1.6E-07 67.0 11.0 42 402-447 37-78 (257)
384 1ega_A Protein (GTP-binding pr 96.8 0.00052 1.8E-08 76.5 3.3 25 411-435 7-31 (301)
385 1j8m_F SRP54, signal recogniti 96.8 0.00031 1.1E-08 77.8 1.4 64 1043-1112 75-139 (297)
386 2www_A Methylmalonic aciduria 96.8 0.00036 1.2E-08 79.5 1.9 40 411-450 73-112 (349)
387 1mky_A Probable GTP-binding pr 96.8 0.00052 1.8E-08 80.9 3.3 56 414-469 182-249 (439)
388 4eaq_A DTMP kinase, thymidylat 96.8 0.00048 1.6E-08 73.4 2.7 43 402-445 13-58 (229)
389 1kag_A SKI, shikimate kinase I 96.7 0.00061 2.1E-08 69.0 3.2 33 411-447 3-35 (173)
390 2qtf_A Protein HFLX, GTP-bindi 96.7 0.00044 1.5E-08 79.0 2.4 50 1073-1128 181-241 (364)
391 1sxj_C Activator 1 40 kDa subu 96.7 0.00015 5.2E-09 82.5 -1.8 69 1059-1127 32-103 (340)
392 2qby_A CDC6 homolog 1, cell di 96.7 0.00048 1.6E-08 79.5 2.4 31 410-440 43-73 (386)
393 2qor_A Guanylate kinase; phosp 96.7 0.0003 1E-08 73.6 0.6 30 408-437 8-37 (204)
394 3llm_A ATP-dependent RNA helic 96.7 0.0013 4.6E-08 70.3 5.8 132 409-576 73-213 (235)
395 2qag_A Septin-2, protein NEDD5 96.7 0.00021 7.3E-09 81.7 -0.6 54 1039-1101 14-67 (361)
396 1f6b_A SAR1; gtpases, N-termin 96.7 0.00041 1.4E-08 72.1 1.4 42 390-434 6-47 (198)
397 2yvu_A Probable adenylyl-sulfa 96.7 0.00037 1.3E-08 71.6 0.9 45 1066-1110 8-53 (186)
398 2w58_A DNAI, primosome compone 96.7 0.0022 7.5E-08 66.7 6.8 27 413-439 55-81 (202)
399 3qf7_A RAD50; ABC-ATPase, ATPa 96.7 0.00073 2.5E-08 77.4 3.3 32 1060-1092 13-44 (365)
400 2ius_A DNA translocase FTSK; n 96.6 0.00087 3E-08 79.3 3.9 56 1063-1118 159-216 (512)
401 1y63_A LMAJ004144AAA protein; 96.6 0.00086 2.9E-08 68.8 3.2 32 1063-1094 2-33 (184)
402 2p5t_B PEZT; postsegregational 96.6 0.0008 2.7E-08 72.9 3.1 48 1061-1111 23-70 (253)
403 1m7g_A Adenylylsulfate kinase; 96.5 0.00041 1.4E-08 73.0 0.1 41 407-447 20-62 (211)
404 1u94_A RECA protein, recombina 96.5 0.01 3.4E-07 67.4 11.4 29 409-437 60-88 (356)
405 1nlf_A Regulatory protein REPA 96.5 0.0012 4.3E-08 72.6 3.9 30 1067-1096 26-55 (279)
406 1ypw_A Transitional endoplasmi 96.5 0.00058 2E-08 86.5 1.3 63 1065-1129 232-294 (806)
407 2ohf_A Protein OLA1, GTP-bindi 96.5 0.0011 3.8E-08 75.7 3.5 41 1067-1107 18-69 (396)
408 1f2t_A RAD50 ABC-ATPase; DNA d 96.5 0.0015 5.1E-08 64.4 3.9 31 403-434 15-45 (149)
409 1lv7_A FTSH; alpha/beta domain 96.5 0.00088 3E-08 72.8 2.4 64 1060-1127 36-99 (257)
410 3t61_A Gluconokinase; PSI-biol 96.4 0.0011 3.9E-08 69.0 2.8 36 1071-1110 18-53 (202)
411 2dby_A GTP-binding protein; GD 96.4 0.00089 3.1E-08 76.3 2.1 59 1073-1163 3-61 (368)
412 3h4m_A Proteasome-activating n 96.4 0.0056 1.9E-07 67.4 8.5 28 409-436 48-75 (285)
413 1np6_A Molybdopterin-guanine d 96.4 0.0014 4.6E-08 66.5 3.1 38 1072-1109 7-47 (174)
414 1m2o_B GTP-binding protein SAR 96.4 0.0016 5.5E-08 67.0 3.7 33 401-434 13-45 (190)
415 1l8q_A Chromosomal replication 96.4 0.0042 1.4E-07 69.9 7.4 29 411-439 36-64 (324)
416 3bos_A Putative DNA replicatio 96.4 0.0017 5.9E-08 69.3 3.8 28 411-438 51-78 (242)
417 2gj8_A MNME, tRNA modification 96.3 0.0018 6E-08 65.6 3.6 27 410-436 2-28 (172)
418 4dcu_A GTP-binding protein ENG 96.3 0.006 2E-07 72.2 8.5 57 525-584 87-144 (456)
419 2wji_A Ferrous iron transport 96.3 0.0024 8.3E-08 63.9 4.3 23 1072-1094 4-26 (165)
420 1f2t_A RAD50 ABC-ATPase; DNA d 96.3 0.0022 7.5E-08 63.2 3.7 29 1063-1092 16-44 (149)
421 1jjv_A Dephospho-COA kinase; P 96.2 0.0014 4.8E-08 68.4 2.2 31 1073-1108 4-34 (206)
422 3cf0_A Transitional endoplasmi 96.2 0.0062 2.1E-07 67.7 7.5 113 406-587 43-170 (301)
423 1sxj_D Activator 1 41 kDa subu 96.2 0.0011 3.6E-08 75.8 1.1 43 540-583 133-175 (353)
424 4fcw_A Chaperone protein CLPB; 96.2 0.011 3.7E-07 65.9 9.2 32 412-443 47-78 (311)
425 3r20_A Cytidylate kinase; stru 96.2 0.00038 1.3E-08 73.9 -2.7 25 412-436 9-33 (233)
426 2wjg_A FEOB, ferrous iron tran 96.1 0.0021 7.1E-08 65.7 2.9 37 1072-1108 8-55 (188)
427 1y63_A LMAJ004144AAA protein; 96.1 0.0024 8.3E-08 65.4 3.3 32 404-435 2-33 (184)
428 1j8m_F SRP54, signal recogniti 96.1 0.001 3.6E-08 73.6 0.4 45 405-450 92-136 (297)
429 3n70_A Transport activator; si 96.1 0.016 5.4E-07 56.6 8.7 32 410-441 22-53 (145)
430 2yvu_A Probable adenylyl-sulfa 96.0 0.0025 8.5E-08 65.3 2.5 36 409-444 10-45 (186)
431 1ko7_A HPR kinase/phosphatase; 95.9 0.0029 1E-07 69.8 3.0 46 1060-1106 134-183 (314)
432 2ohf_A Protein OLA1, GTP-bindi 95.9 0.0033 1.1E-07 71.9 3.1 28 408-435 18-45 (396)
433 2ga8_A Hypothetical 39.9 kDa p 95.8 0.0016 5.4E-08 73.0 0.1 37 1059-1095 10-48 (359)
434 2vhj_A Ntpase P4, P4; non- hyd 95.8 0.018 6.3E-07 63.4 8.4 28 408-435 119-146 (331)
435 3ihw_A Centg3; RAS, centaurin, 95.8 0.006 2E-07 62.3 4.4 37 1073-1109 22-67 (184)
436 2zej_A Dardarin, leucine-rich 95.8 0.0042 1.4E-07 63.4 3.2 23 1073-1095 4-26 (184)
437 1np6_A Molybdopterin-guanine d 95.8 0.0035 1.2E-07 63.4 2.5 28 412-439 6-33 (174)
438 4ag6_A VIRB4 ATPase, type IV s 95.7 0.0048 1.7E-07 71.5 3.8 70 1048-1122 11-83 (392)
439 2if2_A Dephospho-COA kinase; a 95.7 0.0049 1.7E-07 64.1 3.5 21 1073-1093 3-23 (204)
440 1njg_A DNA polymerase III subu 95.7 0.014 4.7E-07 62.0 7.1 45 539-584 125-169 (250)
441 3cm0_A Adenylate kinase; ATP-b 95.7 0.005 1.7E-07 62.9 3.3 27 1069-1095 2-28 (186)
442 2z43_A DNA repair and recombin 95.6 0.0068 2.3E-07 68.2 4.5 67 1067-1142 103-179 (324)
443 2wji_A Ferrous iron transport 95.6 0.0078 2.7E-07 60.1 4.5 23 414-436 5-27 (165)
444 2qag_A Septin-2, protein NEDD5 95.6 0.0011 3.9E-08 75.6 -2.0 55 381-444 15-69 (361)
445 3t61_A Gluconokinase; PSI-biol 95.6 0.0039 1.3E-07 64.8 2.2 32 412-447 18-49 (202)
446 2p5t_B PEZT; postsegregational 95.6 0.004 1.4E-07 67.4 2.3 40 408-449 28-67 (253)
447 1jal_A YCHF protein; nucleotid 95.6 0.008 2.7E-07 68.0 4.8 36 1071-1106 2-48 (363)
448 3lxx_A GTPase IMAP family memb 95.6 0.0087 3E-07 64.0 4.8 28 1073-1100 31-58 (239)
449 2jaq_A Deoxyguanosine kinase; 95.5 0.00078 2.7E-08 70.2 -3.5 23 414-436 2-24 (205)
450 3qks_A DNA double-strand break 95.5 0.0072 2.5E-07 62.9 3.9 30 403-433 15-44 (203)
451 2q6t_A DNAB replication FORK h 95.5 0.018 6.3E-07 67.6 7.9 105 401-551 189-293 (444)
452 1xjc_A MOBB protein homolog; s 95.5 0.005 1.7E-07 61.7 2.5 36 1072-1107 5-43 (169)
453 3dm5_A SRP54, signal recogniti 95.5 0.066 2.3E-06 62.0 12.1 29 411-439 99-127 (443)
454 1qhx_A CPT, protein (chloramph 95.4 0.0071 2.4E-07 61.3 3.4 26 1071-1096 3-28 (178)
455 1gtv_A TMK, thymidylate kinase 95.4 0.0022 7.5E-08 67.3 -0.6 26 1073-1098 2-27 (214)
456 2wjg_A FEOB, ferrous iron tran 95.4 0.0067 2.3E-07 61.9 3.1 22 414-435 9-30 (188)
457 1ega_A Protein (GTP-binding pr 95.4 0.0049 1.7E-07 68.5 2.1 25 1070-1094 7-31 (301)
458 2qz4_A Paraplegin; AAA+, SPG7, 95.4 0.06 2.1E-06 58.0 10.9 26 411-436 38-63 (262)
459 2zr9_A Protein RECA, recombina 95.4 0.011 3.7E-07 67.0 4.9 62 1067-1131 57-119 (349)
460 1fzq_A ADP-ribosylation factor 95.4 0.0069 2.4E-07 61.6 3.0 38 1072-1109 17-62 (181)
461 1v5w_A DMC1, meiotic recombina 95.3 0.007 2.4E-07 68.6 3.3 67 1067-1142 118-194 (343)
462 3trf_A Shikimate kinase, SK; a 95.3 0.008 2.7E-07 61.3 3.2 26 1070-1095 4-29 (185)
463 3kb2_A SPBC2 prophage-derived 95.3 0.0074 2.5E-07 60.6 2.8 24 1073-1096 3-26 (173)
464 2b8t_A Thymidine kinase; deoxy 95.2 0.015 5.3E-07 61.1 5.1 51 540-594 89-150 (223)
465 2zej_A Dardarin, leucine-rich 95.2 0.0092 3.2E-07 60.8 3.3 25 414-438 4-28 (184)
466 2ga8_A Hypothetical 39.9 kDa p 95.2 0.0029 9.8E-08 70.9 -0.6 37 400-436 10-48 (359)
467 3kl4_A SRP54, signal recogniti 95.2 0.0059 2E-07 70.8 1.9 42 1070-1111 96-137 (433)
468 3d8b_A Fidgetin-like protein 1 95.2 0.052 1.8E-06 61.8 9.9 27 410-436 115-141 (357)
469 1gvn_B Zeta; postsegregational 95.2 0.012 4E-07 64.9 4.2 38 1070-1109 32-69 (287)
470 1qhx_A CPT, protein (chloramph 95.1 0.01 3.6E-07 60.0 3.6 27 411-437 2-28 (178)
471 2if2_A Dephospho-COA kinase; a 95.1 0.0091 3.1E-07 62.0 2.9 21 414-434 3-23 (204)
472 1vht_A Dephospho-COA kinase; s 95.1 0.012 4E-07 62.0 3.7 32 1070-1106 3-34 (218)
473 3qks_A DNA double-strand break 95.0 0.012 4.2E-07 61.1 3.7 29 1063-1092 16-44 (203)
474 1kht_A Adenylate kinase; phosp 95.0 0.011 3.8E-07 60.5 3.3 26 1071-1096 3-28 (192)
475 2rhm_A Putative kinase; P-loop 95.0 0.0093 3.2E-07 61.2 2.6 27 1069-1095 3-29 (193)
476 2v54_A DTMP kinase, thymidylat 95.0 0.012 4.1E-07 61.0 3.5 27 1069-1095 2-28 (204)
477 1gvn_B Zeta; postsegregational 95.0 0.014 4.6E-07 64.4 4.1 35 411-447 32-66 (287)
478 1q3t_A Cytidylate kinase; nucl 94.9 0.012 4.1E-07 62.8 3.4 26 1068-1093 13-38 (236)
479 3lw7_A Adenylate kinase relate 94.9 0.012 4.1E-07 59.1 3.1 19 1073-1091 3-21 (179)
480 2bwj_A Adenylate kinase 5; pho 94.9 0.0056 1.9E-07 63.2 0.6 30 1066-1095 7-36 (199)
481 3iij_A Coilin-interacting nucl 94.8 0.0094 3.2E-07 60.6 2.2 27 1069-1095 9-35 (180)
482 3cm0_A Adenylate kinase; ATP-b 94.8 0.011 3.9E-07 60.2 2.8 27 410-436 2-28 (186)
483 1xp8_A RECA protein, recombina 94.8 0.081 2.8E-06 60.1 10.0 29 408-436 70-98 (366)
484 2chg_A Replication factor C sm 94.8 0.04 1.4E-06 57.4 7.1 23 414-436 40-62 (226)
485 1ex7_A Guanylate kinase; subst 94.8 0.012 4.2E-07 60.0 2.9 23 414-436 3-25 (186)
486 3syl_A Protein CBBX; photosynt 94.8 0.11 3.8E-06 57.5 11.1 26 411-436 66-91 (309)
487 3cbq_A GTP-binding protein REM 94.8 0.013 4.4E-07 60.5 3.0 36 1073-1108 25-71 (195)
488 2c95_A Adenylate kinase 1; tra 94.7 0.013 4.3E-07 60.4 2.9 27 1069-1095 7-33 (196)
489 3t15_A Ribulose bisphosphate c 94.7 0.051 1.7E-06 60.0 7.9 25 412-436 36-60 (293)
490 2v1u_A Cell division control p 94.7 0.039 1.3E-06 63.3 7.2 28 410-437 42-69 (387)
491 3ihw_A Centg3; RAS, centaurin, 94.7 0.024 8.3E-07 57.7 4.8 21 414-434 22-42 (184)
492 2r6a_A DNAB helicase, replicat 94.7 0.0082 2.8E-07 70.9 1.4 59 1059-1120 191-250 (454)
493 4ag6_A VIRB4 ATPase, type IV s 94.7 0.013 4.6E-07 67.7 3.2 36 411-446 34-69 (392)
494 3uk6_A RUVB-like 2; hexameric 94.6 0.078 2.7E-06 60.5 9.5 38 410-447 68-105 (368)
495 3kb2_A SPBC2 prophage-derived 94.6 0.016 5.5E-07 58.1 3.2 24 413-436 2-25 (173)
496 2lkc_A Translation initiation 94.6 0.032 1.1E-06 56.0 5.4 25 1069-1093 6-30 (178)
497 2ze6_A Isopentenyl transferase 94.5 0.014 4.9E-07 62.9 2.9 23 1073-1095 3-25 (253)
498 2wwf_A Thymidilate kinase, put 94.5 0.017 5.7E-07 60.3 3.2 28 1068-1095 7-34 (212)
499 3lxw_A GTPase IMAP family memb 94.5 0.016 5.5E-07 62.3 3.1 23 1072-1094 22-44 (247)
500 1jal_A YCHF protein; nucleotid 94.5 0.025 8.6E-07 63.9 4.8 36 412-447 2-48 (363)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.3e-163 Score=1620.58 Aligned_cols=1129 Identities=34% Similarity=0.608 Sum_probs=960.7
Q ss_pred cccchHHHHhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-----------------CCchhhHHHHH
Q 001041 41 TESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDN-----------------QNNSETVDKVS 103 (1178)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~ 103 (1178)
..+++++++|+|+.++++.+++++++++++.++..|++++++|++++.+... .....+.+...
T Consensus 57 ~~~v~~~~Lfrya~~~d~~l~~~g~~~a~~~G~~~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (1321)
T 4f4c_A 57 VNKVSIPQLYRYTTTLEKLLLFIGTLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKTDFEHDVM 136 (1321)
T ss_dssp SSCCCHHHHTTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTSCBCSSTTCBCCHHHHHHHHH
T ss_pred cCCCCHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchHHHHHHHH
Confidence 3468899999999999999999999999999999999999999988865321 01123334455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHH
Q 001041 104 KVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVG 183 (1178)
Q Consensus 104 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~ 183 (1178)
.+++++++++++.+++.|++.+++.+.+.|...++|.+++++++++|++|||+. ++|++++|+++|++.+++.+...+.
T Consensus 137 ~~~~~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~-~~G~l~sr~~~D~~~i~~~~~~~l~ 215 (1321)
T 4f4c_A 137 NVVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDTN-HSGTLATKLFDNLERVKEGTGDKIG 215 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHT-CCTTHHHHHHHHHHHHHHTSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCC-ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667778888899999999999999999999999999999999999999999984 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHH
Q 001041 184 KFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEK 263 (1178)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~ 263 (1178)
.++..+..+++.++++++++|.+++++++.+|+++++..++.+..++..++.++..+++.+.+.|.++|+++||+|++|+
T Consensus 216 ~~~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~ 295 (1321)
T 4f4c_A 216 MAFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLR 295 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 264 QAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPC 343 (1178)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~ 343 (1178)
.+.++|.+...+..+...+.....++......++..+.+++.+|+|..++..+.++.+.+++++.++.....++..+.+.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~ 375 (1321)
T 4f4c_A 296 YELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQ 375 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888888888888887777888888888999999999999999999999988888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCC
Q 001041 344 LSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGS 423 (1178)
Q Consensus 344 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~Gs 423 (1178)
+..+..+..++.|++++++.+|+.+........+.+.+|.|+|+||+|+||+++++++|+|+||+|++||+++|||||||
T Consensus 376 ~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGs 455 (1321)
T 4f4c_A 376 LAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGC 455 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSS
T ss_pred HHHHHHHHHHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCC
Confidence 99999999999999999998776554333333444567889999999999987778999999999999999999999999
Q ss_pred cHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHH
Q 001041 424 GKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAK 503 (1178)
Q Consensus 424 GKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~ 503 (1178)
|||||+++|+|+|+|++|+|.+||+|+++++++++|++|+||||+||||++||||||.||.|++++++++++|+.|++++
T Consensus 456 GKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~ 535 (1321)
T 4f4c_A 456 GKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEK 535 (1321)
T ss_dssp CHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHH
T ss_pred cHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcch
Q 001041 504 FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLST 583 (1178)
Q Consensus 504 ~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~ 583 (1178)
+++.||+|++|.|||+|.+||||||||||||||+|++|+||||||||||||+++++.++++++++.++||+|+||||+++
T Consensus 536 ~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~ 615 (1321)
T 4f4c_A 536 FIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLST 615 (1321)
T ss_dssp HHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTT
T ss_pred HHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHHHhhcccchhccccccccchhhhhhhcccccccccccccCCCC
Q 001041 584 VRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSS 663 (1178)
Q Consensus 584 ~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (1178)
+++||+|+||++|+|+|+|+|+||+++ ++.|+++++.|......+...+.....+.. ......+.....+..+....
T Consensus 616 i~~aD~Iivl~~G~ive~Gth~eL~~~-~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 692 (1321)
T 4f4c_A 616 IRNADLIISCKNGQVVEVGDHRALMAQ-QGLYYDLVTAQTFTDAVDSAAEGKFSRENS--VARQTSEHEGLSRQASEMDD 692 (1321)
T ss_dssp TTTCSEEEEEETTEEEEEECHHHHHTT-TCHHHHHHHHHHHHHHHHHHHCC-----------------------------
T ss_pred HHhCCEEEEeeCCeeeccCCHHHHHHh-hhHHHHHHHhhhcccccccccccccccccc--cccccccccccccccccccc
Confidence 999999999999999999999999997 799999998775433221111000000000 00000000000000000000
Q ss_pred CCCCCCcccccccCCCCCCCCcccCCCCCCC-------CCCCCCCCCcchhHhhhhhcCChhHHHHHHHHHHHHHHHHHH
Q 001041 664 IGNSSRHSISVSFGLPSGQFADTALGEPAGP-------SQPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILP 736 (1178)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (1178)
. ..... ..........+........... ...++.......+++++++.+++++.++++++++++.++..+
T Consensus 693 ~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~ 769 (1321)
T 4f4c_A 693 I--MNRVR-SSTIGSITNGPVIDEKEERIGKDALSRLKQELEENNAQKTNLFEILYHARPHALSLFIGMSTATIGGFIYP 769 (1321)
T ss_dssp --------------------------CCCCCCHHHHHHHTTTTSCCCCCCHHHHHHHTGGGHHHHHHHHHHHHHGGGHHH
T ss_pred h--hhhhh-ccccccccCCcchhHHHhhccchhHHHHHHHHHHcCCcceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00000 0000000000000000000000 000011112234556667778888888888888888888899
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCC
Q 001041 737 IYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPE 816 (1178)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~ 816 (1178)
.+++++..+++.+...+........+|.++|++++++..++.+++.+++...+.++.+++|.++|++++++|++|||.++
T Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~ 849 (1321)
T 4f4c_A 770 TYSVFFTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQ 849 (1321)
T ss_dssp HHHHHHHHHHHHTSSCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGG
T ss_pred HHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhccCC
Confidence 99999999888776544333344567888888899999999999999999999999999999999999999999999767
Q ss_pred CChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 001041 817 HSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKM 896 (1178)
Q Consensus 817 ~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~ 896 (1178)
+++|+|+||+++|++.++..++..+..++..++.++++++++++++|++++++++++|+++++.+++.++.+....+.++
T Consensus 850 ~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 929 (1321)
T 4f4c_A 850 NASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSAS 929 (1321)
T ss_dssp GCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSS
T ss_pred CChHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeeeehHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999998888888777776777777
Q ss_pred HHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 001041 897 KYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGK 976 (1178)
Q Consensus 897 ~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ 976 (1178)
..++....+.|+++|+++||+|++|+++.++|.+..+...+...+.....+...++...+..+..++++++|..++..+.
T Consensus 930 ~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~ 1009 (1321)
T 4f4c_A 930 EFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDP 1009 (1321)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSS
T ss_pred HHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCc
Confidence 78888899999999999999999999999999999999999999988888888888888888888999999999998887
Q ss_pred CCHHH--HHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccCccccEEEeeeEEeCCC
Q 001041 977 ATFSD--VFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPS 1054 (1178)
Q Consensus 977 ~t~g~--l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~ 1054 (1178)
.+.+. ++.++.++.....++..+..+...++++..+++|++++++.+++.+.... +...++..|+|+|+||+|+||+
T Consensus 1010 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~-~~~~~~~~g~I~f~nVsf~Y~~ 1088 (1321)
T 4f4c_A 1010 PTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLSL-AGEKKKLYGKVIFKNVRFAYPE 1088 (1321)
T ss_dssp CSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCTTCC-CSBCCCCCCCEEEEEEEECCTT
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCCccC-CCCCCCCCCeEEEEEEEEeCCC
Confidence 66554 44444455555667778888888999999999999999998877644322 2334556899999999999998
Q ss_pred CCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcccccccccccccc
Q 001041 1055 RPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDT 1134 (1178)
Q Consensus 1055 ~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gT 1134 (1178)
+++.|||+||||+|+|||+||||||||||||||+++|+|||||++|+|+|||+||+++++++||++|++|||||+||+||
T Consensus 1089 ~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gT 1168 (1321)
T 4f4c_A 1089 RPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCS 1168 (1321)
T ss_dssp SCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEE
T ss_pred CCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCcc
Confidence 77778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC-CCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1135 IRANIAYGK-GGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1135 IreNI~~g~-~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
|||||+||. ++++||||||+||+.|++||||++||+||||+|+
T Consensus 1169 IreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vg 1212 (1321)
T 4f4c_A 1169 IAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVG 1212 (1321)
T ss_dssp HHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEET
T ss_pred HHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEec
Confidence 999999984 3579999999999999999999999999999985
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=6.6e-143 Score=1418.85 Aligned_cols=1118 Identities=40% Similarity=0.694 Sum_probs=943.6
Q ss_pred cccchHHHHhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC-------Cc---------hhhHHHHHH
Q 001041 41 TESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQ-------NN---------SETVDKVSK 104 (1178)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~---------~~~~~~~~~ 104 (1178)
...++++++++|.++.++.+++++++++++.+++.|+++++++.+++.+.... .. .........
T Consensus 30 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (1284)
T 3g5u_A 30 KPAVSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTT 109 (1284)
T ss_dssp ---CTTHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhHHHHHH
Confidence 34567889999988888888889999999999999999999999888754210 00 001123344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHH
Q 001041 105 VAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGK 184 (1178)
Q Consensus 105 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~ 184 (1178)
+.+++++++++.+++.+++.+++.+.+.+...++|.+++++++++|++|||+ +++|+++||+++|++.+++.++..+..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~-~~~G~l~sr~~~D~~~i~~~~~~~~~~ 188 (1284)
T 3g5u_A 110 YAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDV-HDVGELNTRLTDDVSKINEGIGDKIGM 188 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHS-CCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcc-CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777888888999999999999999999999999999999999999997 499999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHH
Q 001041 185 FLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQ 264 (1178)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~ 264 (1178)
++..+..+++.++++++++|.+++++++++|+++++..++.+..++..++.++..++..+.+.|+++|+++||+|++|+.
T Consensus 189 ~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~ 268 (1284)
T 3g5u_A 189 FFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKK 268 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 265 AMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCL 344 (1178)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~ 344 (1178)
+.++|.+..++..+...+.....++..++..++..+.+++.+|+|+.++..+.++.|.+++++.+.+....++..+.+.+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 348 (1284)
T 3g5u_A 269 ELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNI 348 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888777777777777777778888889999999999999999998877777666677888888888
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCc
Q 001041 345 SAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSG 424 (1178)
Q Consensus 345 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsG 424 (1178)
..+..+..++.|++++++.+++.++.......+++..|.|+++||+|+|+++++.++|+|+||+|++||+++||||||||
T Consensus 349 ~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsG 428 (1284)
T 3g5u_A 349 EAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCG 428 (1284)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSS
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCC
Confidence 99999999999999999887664432222223334568899999999998665568999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHH
Q 001041 425 KSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKF 504 (1178)
Q Consensus 425 KStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~ 504 (1178)
||||+++|+|+++|++|+|.+||+|+++++++++|++|+||||+|++|++||+|||.+|.++.++++++++++.++++++
T Consensus 429 KSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~ 508 (1284)
T 3g5u_A 429 KSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDF 508 (1284)
T ss_dssp HHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred HHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchh
Q 001041 505 IDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTV 584 (1178)
Q Consensus 505 i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~ 584 (1178)
+..+|+|++|.+|++|.+||||||||||||||++++|+|||||||||+||+++++.+++.++...+++|+|+||||++++
T Consensus 509 i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i 588 (1284)
T 3g5u_A 509 IMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTV 588 (1284)
T ss_dssp HHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHH
T ss_pred HHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred hccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHHHhhcccchhccccccccchhhhhhhcccccccccccccCCCCC
Q 001041 585 RNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSI 664 (1178)
Q Consensus 585 ~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (1178)
..||+|+||++|+|+|.|+|+||+++ ++.|.+++..+....+.+........ ....... . ....... ..
T Consensus 589 ~~~d~i~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~------~~~~~~~-~~- 657 (1284)
T 3g5u_A 589 RNADVIAGFDGGVIVEQGNHDELMRE-KGIYFKLVMTQTAGNEIELGNEACKS-KDEIDNL-D------MSSKDSG-SS- 657 (1284)
T ss_dssp TTCSEEEECSSSCCCCEECHHHHHHT-TSHHHHHHHHTC-----------------------------------------
T ss_pred HcCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHHhhhccccccccccccc-ccccccc-c------ccccccc-cc-
Confidence 99999999999999999999999987 67888887655332211100000000 0000000 0 0000000 00
Q ss_pred CCCCCcccccccCCCCCCCCcccCCCCCCCCCCCCCCCCcchhHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 665 GNSSRHSISVSFGLPSGQFADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISS 744 (1178)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (1178)
........... . ....... . .......++......+++++.+.+++++.++++++++++.+++.+.+++++..
T Consensus 658 -~~~~~~~~~~~--~--~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (1284)
T 3g5u_A 658 -LIRRRSTRKSI--C--GPHDQDR-K-LSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSK 730 (1284)
T ss_dssp ---------------------------------CCCCCSCCCTTHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -ccccccccccc--c--ccccccc-c-cchhhhhhccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000000 0 0000000 0 00000001111122344455555666777777888888888888888888888
Q ss_pred HHHhhcCCCc--hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhH
Q 001041 745 VIETFFKPPH--ELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAI 822 (1178)
Q Consensus 745 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i 822 (1178)
+++.+..... ........|.+++++++++..++.+++.+++...+.++..++|.++|++++++|++|||++++++|+|
T Consensus 731 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l 810 (1284)
T 3g5u_A 731 VVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGAL 810 (1284)
T ss_dssp HHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHH
T ss_pred HHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHH
Confidence 8876653321 12223455677788888888889999999999999999999999999999999999999777999999
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 001041 823 GARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEAS 902 (1178)
Q Consensus 823 ~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 902 (1178)
++|+++|++.++..++..+..++..++.+++++++++.++|++++++++++|+++++.++..+++++...+.++..+...
T Consensus 811 ~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 890 (1284)
T 3g5u_A 811 TTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSG 890 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998888888888888899
Q ss_pred HHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHH
Q 001041 903 QVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDV 982 (1178)
Q Consensus 903 ~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l 982 (1178)
..+.|+++|+++||+|++|+++.++|.+..+...+...+.....+...++...+..+..++++|+|++++..|.++++.+
T Consensus 891 ~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~ 970 (1284)
T 3g5u_A 891 KIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENV 970 (1284)
T ss_dssp HHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHH
Confidence 99999999999999999999999999999999999999988888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccCccccEEEeeeEEeCCCCCCccccc
Q 001041 983 FKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFR 1062 (1178)
Q Consensus 983 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~ 1062 (1178)
+.++.++.....++..+..+...++++..+++|+.++++.+++.+........+++..|.|+|+||+|+|+++++.++|+
T Consensus 971 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~ 1050 (1284)
T 3g5u_A 971 LLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQ 1050 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCcEEEEEEEEECCCCCCCeeec
Confidence 99999999999999999999999999999999999999987765432222222334578999999999998655557999
Q ss_pred cceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccccccccccccccHHHHHhcC
Q 001041 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142 (1178)
Q Consensus 1063 ~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g 1142 (1178)
||||+|+|||++|||||||||||||+++|+|+|+|++|+|+|||+|+++++++++|++|++|||||.||++||+|||++|
T Consensus 1051 ~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~ 1130 (1284)
T 3g5u_A 1051 GLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYG 1130 (1284)
T ss_dssp SCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCC
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC-CCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1143 KG-GDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1143 ~~-~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
.+ ...+++++++|++.+++++|+.++|+||||.|+
T Consensus 1131 ~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vg 1166 (1284)
T 3g5u_A 1131 DNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVG 1166 (1284)
T ss_dssp CSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCS
T ss_pred CCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccC
Confidence 54 247899999999999999999999999999985
No 3
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=5.3e-86 Score=877.07 Aligned_cols=576 Identities=34% Similarity=0.575 Sum_probs=482.7
Q ss_pred cchHHHHhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 43 SVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFL 122 (1178)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 122 (1178)
+.++++++++.++. +..++++++++++.+.+.|.++++++.+++.+..... +.......+.+.|++++++..++.++
T Consensus 737 ~~~~~~~~~~~~~~-~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~i~~~~ 813 (1321)
T 4f4c_A 737 KTNLFEILYHARPH-ALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPA--DFLSQGHFWALMFLVLAAAQGICSFL 813 (1321)
T ss_dssp CCCHHHHHHHTGGG-HHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCSS--TTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch--hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666655443 4556677777888888899999999998887654321 12223344566677788888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhc-cCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 123 QVTCWMITGERQATRIRGLYLKTILRQDVAFFDN-ETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFI 201 (1178)
Q Consensus 123 ~~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~-~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (1178)
..+++.+.+.++..++|.+++++++++|++|||. .+++|+++||+++|++.+++.++..+..++..+..+++.++++++
T Consensus 814 ~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~ 893 (1321)
T 4f4c_A 814 MTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFF 893 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeeeehH
Confidence 9999999999999999999999999999999985 248999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Q 001041 202 KGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGV 281 (1178)
Q Consensus 202 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 281 (1178)
++|.+++++++++|++++...++.+...+...+..+..++....+.|+++|+++||+|++|+.+.+++.+..+...+...
T Consensus 894 ~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~ 973 (1321)
T 4f4c_A 894 YGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAI 973 (1321)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988777766665555555556677788889999999999999999999999999999988888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 282 QEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGG--QVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFE 359 (1178)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~ 359 (1178)
+.....++...+...+..+..++.+++|..++..+..+.+ .++.++.+......++..+......+..+..+++|+++
T Consensus 974 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~ 1053 (1321)
T 4f4c_A 974 KEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFG 1053 (1321)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777766666666666666777888877766655433 33333322222223455566677888899999999999
Q ss_pred HhccCCCCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC
Q 001041 360 TINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ 439 (1178)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~ 439 (1178)
.++.+++.+... ...+.++..|.|+|+||+|+||++++.++|+|+||+|+|||++|||||||||||||+++|+|+|+|+
T Consensus 1054 ~l~~~~~~~~~~-~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~ 1132 (1321)
T 4f4c_A 1054 MLRKISKIDSLS-LAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL 1132 (1321)
T ss_dssp HHHCCCSSCTTC-CCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCS
T ss_pred HhhCcccCCCcc-CCCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCC
Confidence 998877654332 2233455678999999999999877778999999999999999999999999999999999999999
Q ss_pred CCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCC--CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhc
Q 001041 440 AGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGK--DDATTEEIRVATELANAAKFIDKLPQGIDTLVG 517 (1178)
Q Consensus 440 ~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~ 517 (1178)
+|+|.|||+|+++++++++|++|+||||||+||+|||||||.||. +++++++++++|+.++++++|+++|+|+||.||
T Consensus 1133 ~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vg 1212 (1321)
T 4f4c_A 1133 GGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVG 1212 (1321)
T ss_dssp SSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEET
T ss_pred CCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEec
Confidence 999999999999999999999999999999999999999999984 468899999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCE
Q 001041 518 EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGK 597 (1178)
Q Consensus 518 ~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~ 597 (1178)
|+|.+||||||||||||||++++|+|||||||||+||++|++.|+++|++.+++||+|+||||++++.+||+|+|||+|+
T Consensus 1213 e~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~ 1292 (1321)
T 4f4c_A 1213 DRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGT 1292 (1321)
T ss_dssp TTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSS
T ss_pred CCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecChhHHhcCCCchHHHHHHHHh
Q 001041 598 IVEKGTHSKLVEDPEGAYSQLIRLQE 623 (1178)
Q Consensus 598 i~~~g~~~~l~~~~~~~~~~~~~~~~ 623 (1178)
|+|+|+|+||+++ ++.|++|++.|.
T Consensus 1293 IvE~Gth~eLl~~-~g~y~~L~~~Q~ 1317 (1321)
T 4f4c_A 1293 IIEKGTHTQLMSE-KGAYYKLTQKQM 1317 (1321)
T ss_dssp EEEEECHHHHHHC-C-----------
T ss_pred EEEECCHHHHHhC-CcHHHHHHHHHH
Confidence 9999999999998 788999998664
No 4
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.3e-80 Score=763.94 Aligned_cols=568 Identities=25% Similarity=0.396 Sum_probs=493.2
Q ss_pred HHHHhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 46 FYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVT 125 (1178)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 125 (1178)
++.+++|.++.. ..+++++++.++..++....|++++.++|......+. .....+.+.+++++++..++.++..+
T Consensus 11 ~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (587)
T 3qf4_A 11 SKTLARYLKPYW-IFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDF----SLVLKTGILMLIVALIGAVGGIGCTV 85 (587)
T ss_dssp CCCGGGGTGGGH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555655543 3445566666777777788888999999876432221 22233344445555666777788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001041 126 CWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWL 205 (1178)
Q Consensus 126 ~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (1178)
+..+.+.+...++|.++++++++.|+.+|++. ++|+++||+++|++.+++.+...+..++..++.+++.+++++.++|.
T Consensus 86 ~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~-~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 164 (587)
T 3qf4_A 86 FASYASQNFGADLRRDLFRKVLSFSISNVNRF-HTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVK 164 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999974 99999999999999999999988888888888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 206 LTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGL 285 (1178)
Q Consensus 206 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 285 (1178)
+++++++.+|+++++..++.+..++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+...
T Consensus 165 l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 244 (587)
T 3qf4_A 165 LSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFS 244 (587)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888899988888888889999999999999999999999999999999999998888877777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 001041 286 AAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKP 365 (1178)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 365 (1178)
..+.......++..+..++.+++|++++..+.++.+.+++++.+......++..+...+..+..+..+++|+.++++.++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 324 (587)
T 3qf4_A 245 LIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKP 324 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 66666666666666667777888999999999999999888877777777888888888889999999999999998766
Q ss_pred CCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEE
Q 001041 366 EIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 445 (1178)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i 445 (1178)
+.+... .....++..+.|+++||+|+|+++ ++++|+|+||++++||+++||||||||||||+++|+|+++|++|+|.+
T Consensus 325 ~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i 402 (587)
T 3qf4_A 325 AIEEAD-NALALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEV 402 (587)
T ss_dssp SCCCCT-TCBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEE
T ss_pred ccCCCC-CccccCCCCCcEEEEEEEEEcCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEE
Confidence 533221 111223345789999999999753 467999999999999999999999999999999999999999999999
Q ss_pred CCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCCh
Q 001041 446 DGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSG 525 (1178)
Q Consensus 446 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSg 525 (1178)
||+|+++++.+++|++|+||||+|++|++||+|||.++.+..++++++++++.++++++++.+|+|++|.+|++|.+|||
T Consensus 403 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSg 482 (587)
T 3qf4_A 403 DELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSG 482 (587)
T ss_dssp SSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCH
T ss_pred CCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCH
Confidence 99999999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChh
Q 001041 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHS 605 (1178)
Q Consensus 526 Gqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~ 605 (1178)
|||||++||||++++|+|||||||||+||+++++.+++.++++.+++|+|+||||++++..||+|++|++|+|++.|+|+
T Consensus 483 GqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~ 562 (587)
T 3qf4_A 483 GQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHK 562 (587)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHhcCCCchHHHHHHHH
Q 001041 606 KLVEDPEGAYSQLIRLQ 622 (1178)
Q Consensus 606 ~l~~~~~~~~~~~~~~~ 622 (1178)
|++++ ++.|.+++..+
T Consensus 563 el~~~-~~~~~~~~~~~ 578 (587)
T 3qf4_A 563 ELLEH-CKPYREIYESQ 578 (587)
T ss_dssp HHHHH-CHHHHHHHHHH
T ss_pred HHHhC-CcHHHHHHHHH
Confidence 99986 67888888755
No 5
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.1e-80 Score=763.06 Aligned_cols=569 Identities=29% Similarity=0.491 Sum_probs=498.9
Q ss_pred chHHHHhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 44 VPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQ 123 (1178)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 123 (1178)
..++++++|+++.+ ..+++++++.++.+++....|++++.++|......+. .....+.+.++++.++..++.+++
T Consensus 23 ~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 97 (598)
T 3qf4_B 23 ATLRRLLGYLRPHT-FTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRF----DLLPRYMLILGTIYALTSLLFWLQ 97 (598)
T ss_dssp HHHHHHGGGTGGGH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCG----GGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777776643 3455566667777777888888999999976543221 223334445556666777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001041 124 VTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKG 203 (1178)
Q Consensus 124 ~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (1178)
.++..+.+.++..++|.++++++++.|+.+|++. ++|+++||+++|++.+++.+...+..++..+..+++.+++++.++
T Consensus 98 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~-~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 176 (598)
T 3qf4_B 98 GKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRT-PHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVN 176 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCTHHHHHS-CHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999999999999999999999974 999999999999999999999888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Q 001041 204 WLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQE 283 (1178)
Q Consensus 204 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 283 (1178)
|.+++++++.+|+++++..++.+..++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+...+..+...+.
T Consensus 177 ~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 256 (598)
T 3qf4_B 177 VILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKA 256 (598)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998889999988888888999999999999999999999999999999999999998888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 001041 284 GLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINR 363 (1178)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~ 363 (1178)
....++...+..++..+..++.+++|++++..+.++.|.+++++.+......++..+...+..+..+..+++|+.++++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~ 336 (598)
T 3qf4_B 257 QIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDL 336 (598)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 77766666666666666777778889998889999999988877666666677888888889999999999999999987
Q ss_pred CCCCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcE
Q 001041 364 KPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443 (1178)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i 443 (1178)
+++.+... ..+.++..+.|+++||+|+|++ ++++|+|+||++++||+++||||||||||||+++|+|+++|++|+|
T Consensus 337 ~~~~~~~~--~~~~~~~~~~i~~~~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i 412 (598)
T 3qf4_B 337 EEEKDDPD--AVELREVRGEIEFKNVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQI 412 (598)
T ss_dssp CCCCCCSS--CCCCCSCCCCEEEEEEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEE
T ss_pred CCCCCCCC--CCCCCCCCCeEEEEEEEEECCC--CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEE
Confidence 66532211 1222344678999999999964 3579999999999999999999999999999999999999999999
Q ss_pred EECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCC
Q 001041 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQL 523 (1178)
Q Consensus 444 ~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~l 523 (1178)
.+||+|+++++.+++|++|+||||+|++|++||+|||.++.+..++++++++++.++++++++.+|+|++|.+|++|.+|
T Consensus 413 ~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~L 492 (598)
T 3qf4_B 413 LVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDL 492 (598)
T ss_dssp EETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTS
T ss_pred EECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCC
Confidence 99999999999999999999999999999999999999998888889999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecC
Q 001041 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603 (1178)
Q Consensus 524 SgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~ 603 (1178)
|||||||++||||++++|+|||||||||+||+++++.+++.++++.+++|+|+||||++++..||+|++|++|+|++.|+
T Consensus 493 SgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~ 572 (598)
T 3qf4_B 493 SQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGK 572 (598)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSC
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hhHHhcCCCchHHHHHHHHh
Q 001041 604 HSKLVEDPEGAYSQLIRLQE 623 (1178)
Q Consensus 604 ~~~l~~~~~~~~~~~~~~~~ 623 (1178)
|+|++++ ++.|++++..+.
T Consensus 573 ~~~l~~~-~~~~~~~~~~~~ 591 (598)
T 3qf4_B 573 HDELIQK-RGFYYELFTSQY 591 (598)
T ss_dssp HHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHhC-CCHHHHHHHHHh
Confidence 9999987 688999887654
No 6
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=9.5e-80 Score=756.60 Aligned_cols=569 Identities=31% Similarity=0.422 Sum_probs=491.6
Q ss_pred HHHhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHH----HHHHHHHHHHHHHHHHHHHH
Q 001041 47 YKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKV----SKVAVKFVYLGIGSGIASFL 122 (1178)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~ 122 (1178)
+++++|.++..+ .+++++++.++..++.+..|++++.++|......... ..... ..+...++++.++..++.++
T Consensus 3 ~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (578)
T 4a82_A 3 KRYLQFVKPYKY-RIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALT-TDEKVHHLTIAIGIALFIFVIVRPPIEFI 80 (578)
T ss_dssp HHHHHHHGGGHH-HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCC-HHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666655443 3445556666666677777888899988765432210 01111 22233344455566677888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 123 QVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIK 202 (1178)
Q Consensus 123 ~~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (1178)
+.+...+.+.++..++|.++++++++.|+++|++. ++|++++|+++|++.+++.+...+..++..+..+++.+++++.+
T Consensus 81 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~-~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 159 (578)
T 4a82_A 81 RQYLAQWTSNKILYDIRKKLYNHLQALSARFYANN-QVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFL 159 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTS-CHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999974 99999999999999999998877777778888888888899999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Q 001041 203 GWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQ 282 (1178)
Q Consensus 203 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 282 (1178)
+|.+++++++.+|+++++..++.+..++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+...+..+...+
T Consensus 160 ~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 239 (578)
T 4a82_A 160 DVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239 (578)
T ss_dssp CTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888899999998888899999999999999999999999999999999999999888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001041 283 EGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETIN 362 (1178)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 362 (1178)
...+.+....+..++..+..++.+++|++++..+.++.|.+++++.++.....++..+...+..+..+..+++|++++++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~ 319 (578)
T 4a82_A 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID 319 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 77777777766666666677777888999999999999999888777777777888888889999999999999999998
Q ss_pred cCCCCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCc
Q 001041 363 RKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442 (1178)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~ 442 (1178)
.+++.+... ...+.++..+.|+++||+|+|++. ++++|+|+||++++||+++||||||||||||+++|+|+++|++|+
T Consensus 320 ~~~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~ 397 (578)
T 4a82_A 320 EDYDIKNGV-GAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ 397 (578)
T ss_dssp CCCSSCCCT-TCCCCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEE
T ss_pred CCCcccCCC-CccccCCCCCeEEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcE
Confidence 766543221 112223345789999999999753 457999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCC
Q 001041 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522 (1178)
Q Consensus 443 i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~ 522 (1178)
|.+||+|+++++.+++|++|+||||+|++|++||+|||.+|.+..++++++++++.++++++++.+|+|++|.+|++|.+
T Consensus 398 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~ 477 (578)
T 4a82_A 398 ILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVK 477 (578)
T ss_dssp EEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTT
T ss_pred EEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCc
Confidence 99999999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEec
Q 001041 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 523 lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g 602 (1178)
||||||||++||||++++|+++|||||||+||+++++.+.+.++++.+++|+|+||||++++..||+|++|++|+|++.|
T Consensus 478 LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g 557 (578)
T 4a82_A 478 LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETG 557 (578)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred ChhHHhcCCCchHHHHHHH
Q 001041 603 THSKLVEDPEGAYSQLIRL 621 (1178)
Q Consensus 603 ~~~~l~~~~~~~~~~~~~~ 621 (1178)
+|+|+++. ++.|.++++.
T Consensus 558 ~~~el~~~-~~~~~~~~~~ 575 (578)
T 4a82_A 558 THRELIAK-QGAYEHLYSI 575 (578)
T ss_dssp CHHHHHHT-TSHHHHHHTT
T ss_pred CHHHHHhC-CcHHHHHHHh
Confidence 99999987 6788888753
No 7
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=2.8e-77 Score=737.95 Aligned_cols=574 Identities=37% Similarity=0.557 Sum_probs=476.2
Q ss_pred HHHHhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 46 FYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVT 125 (1178)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 125 (1178)
+++++++.++.++ .+++++++.++..++.+..|++++.+++........ ........+...++++.++..++.+++.+
T Consensus 7 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (595)
T 2yl4_A 7 ARKLLGLAYPERR-RLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTV-DYSDNLTRLCLGLSAVFLCGAAANAIRVY 84 (595)
T ss_dssp HHHHHHHHGGGHH-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCTTS-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666554433 334455566666667777788888888865432111 01011222233344455556677778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001041 126 CWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWL 205 (1178)
Q Consensus 126 ~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (1178)
+..+.+.++..++|.++++++++.|+++|++. ++|++++|+++|++.+++.+...+..++..+..+++.++++++++|.
T Consensus 85 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~-~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 163 (595)
T 2yl4_A 85 LMQTSGQRIVNRLRTSLFSSILRQEVAFFDKT-RTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPN 163 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHS-CHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 88888999999999999999999999999974 99999999999999999999888889999888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 206 LTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGL 285 (1178)
Q Consensus 206 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 285 (1178)
+++++++.+|+++++..++.+..++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+...
T Consensus 164 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 243 (595)
T 2yl4_A 164 LATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAF 243 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888888888888888888899999999999999999999999999999999998888877777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 001041 286 AAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKP 365 (1178)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 365 (1178)
..++......++..+..++.+++|++++..+.++.|.+++++.+......++..+...+..+..+..+++|+.++++.++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 323 (595)
T 2yl4_A 244 ARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREP 323 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 66666666556666666677888999999999999999888777777778888888889999999999999999998765
Q ss_pred CCCcCCCCCcccCCCccc-EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEE
Q 001041 366 EIDAYDTKGKILDDIRGD-IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 444 (1178)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~-i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~ 444 (1178)
+.+... ...+.++..+. |+++||+|+|+++++.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.
T Consensus 324 ~~~~~~-~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~ 402 (595)
T 2yl4_A 324 KLPFNE-GVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTIS 402 (595)
T ss_dssp SSCSSC-SBCCCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEE
T ss_pred ccCCCC-CCCCCcCCCCCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEE
Confidence 533211 11111223567 9999999999754345799999999999999999999999999999999999999999999
Q ss_pred ECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCC
Q 001041 445 IDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD---ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGT 521 (1178)
Q Consensus 445 i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~ 521 (1178)
+||+|+.+++.+++|++|+||||+|++|++||+|||.++.+. .++++++++++.++++++++.+|+|++|.+|++|.
T Consensus 403 ~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~ 482 (595)
T 2yl4_A 403 LDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGV 482 (595)
T ss_dssp ETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSC
T ss_pred ECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCC
Confidence 999999999999999999999999999999999999998765 67899999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEe
Q 001041 522 QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEK 601 (1178)
Q Consensus 522 ~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~ 601 (1178)
+||||||||++||||++++|++||||||||+||+++++.+.+.++++.+++|+|+||||++++..||+|++|++|++++.
T Consensus 483 ~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~ 562 (595)
T 2yl4_A 483 LLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEY 562 (595)
T ss_dssp CCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTEEEEE
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHcCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred cChhHHhcCCCchHHHHHHHHh
Q 001041 602 GTHSKLVEDPEGAYSQLIRLQE 623 (1178)
Q Consensus 602 g~~~~l~~~~~~~~~~~~~~~~ 623 (1178)
|+|+|+++++++.|.++++.|.
T Consensus 563 g~~~~l~~~~~~~~~~~~~~q~ 584 (595)
T 2yl4_A 563 GKHEELLSKPNGIYRKLMNKQS 584 (595)
T ss_dssp ECSCC------C----------
T ss_pred CCHHHHHhCCChHHHHHHHHhh
Confidence 9999998855788888876553
No 8
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=6.2e-77 Score=733.01 Aligned_cols=566 Identities=31% Similarity=0.499 Sum_probs=490.1
Q ss_pred HHHHhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 46 FYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVT 125 (1178)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 125 (1178)
++.++++.++.. ..+++++++.++.+++.+..+++++.+++......+. .......+.+++++++..++.++..+
T Consensus 13 ~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (582)
T 3b5x_A 13 FKRLWTYIRLYK-AGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAES----NFLRILPFMILGLMFVRGLSGFASSY 87 (582)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566554443 3344555666667777777888888888876432111 11112222344556667778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001041 126 CWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWL 205 (1178)
Q Consensus 126 ~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (1178)
+..+.+.++..++|.++++++++.|+.+|++. ++|++++|+++|++.+++.+...+..++..+..+++.++++++++|.
T Consensus 88 ~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~-~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 166 (582)
T 3b5x_A 88 CLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQE-STGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQ 166 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 88889999999999999999999999999974 99999999999999999999888889999998888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 206 LTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGL 285 (1178)
Q Consensus 206 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 285 (1178)
+++++++.+|+++++..++.+..++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+...
T Consensus 167 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 246 (582)
T 3b5x_A 167 LSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVS 246 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888888888888888888999999999999999999999999999999999999888888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 001041 286 AAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKP 365 (1178)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 365 (1178)
..++......++..+..++.+++|++++..+.++.|.+++++.+......++..+...+..+..+..+++|+.++++.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 326 (582)
T 3b5x_A 247 AQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLET 326 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 77776666666666777777888999889999999999988888888888888888899999999999999999998765
Q ss_pred CCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEE
Q 001041 366 EIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 445 (1178)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i 445 (1178)
+.+.. ..+.++..+.|+++||+|+|+++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 327 ~~~~~---~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~ 402 (582)
T 3b5x_A 327 ERDNG---KYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICL 402 (582)
T ss_pred cCCCC---CCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEE
Confidence 43211 11122234679999999999743 257999999999999999999999999999999999999999999999
Q ss_pred CCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCC-CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCC
Q 001041 446 DGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGK-DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLS 524 (1178)
Q Consensus 446 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lS 524 (1178)
||+|+.+.+.+++|++|+||||+|++|++||+|||.++. +..++++++++++.++++++++.+|+|++|.+|++|.+||
T Consensus 403 ~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LS 482 (582)
T 3b5x_A 403 DGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLS 482 (582)
T ss_pred CCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCC
Confidence 999999999999999999999999999999999999987 6678899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecCh
Q 001041 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTH 604 (1178)
Q Consensus 525 gGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 604 (1178)
||||||++||||++++|++||||||||+||+++++.+.+.++++.+++|+|+||||++++..||+|++|++|++++.|+|
T Consensus 483 gGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 562 (582)
T 3b5x_A 483 GGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRH 562 (582)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred hHHhcCCCchHHHHHHHH
Q 001041 605 SKLVEDPEGAYSQLIRLQ 622 (1178)
Q Consensus 605 ~~l~~~~~~~~~~~~~~~ 622 (1178)
+|+.++ ++.|+++++.|
T Consensus 563 ~~l~~~-~~~~~~~~~~q 579 (582)
T 3b5x_A 563 ADLLAQ-DGAYAQLHRIQ 579 (582)
T ss_pred HHHHhC-CcHHHHHHHHh
Confidence 999986 67898888755
No 9
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=5.5e-77 Score=733.44 Aligned_cols=566 Identities=32% Similarity=0.523 Sum_probs=488.8
Q ss_pred HHHHhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 46 FYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVT 125 (1178)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 125 (1178)
++.++++.++.. ..+++++++.++.+++.+..+++++.+++......+ ........+.+++++++..++.++..+
T Consensus 13 ~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (582)
T 3b60_A 13 FRRLWPTIAPFK-AGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD----RSVLLWMPLVVIGLMILRGITSYISSY 87 (582)
T ss_dssp HHHHHHHHGGGH-HHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTT----HHHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc----hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666665443 334455566666677777778888888886543211 111111222344555667777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001041 126 CWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWL 205 (1178)
Q Consensus 126 ~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (1178)
...+.+.+...++|.++++++++.|+.+|++. ++|++++|+++|++.+++.+...+..++..+..+++.++++++++|.
T Consensus 88 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~-~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 166 (582)
T 3b60_A 88 CISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQ-STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQ 166 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCSTHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 88889999999999999999999999999974 99999999999999999999988889999998888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 206 LTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGL 285 (1178)
Q Consensus 206 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 285 (1178)
+++++++.+|+++++..++.+..++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+...
T Consensus 167 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 246 (582)
T 3b60_A 167 LSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVS 246 (582)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888888888888888888999999999999999999999999999999999999888888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 001041 286 AAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKP 365 (1178)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 365 (1178)
..++......++..+..++.+++|++++..+.++.|.+++++.+......++..+...+..+..+..+.+|+.++++.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 326 (582)
T 3b60_A 247 ASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQ 326 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 77776666666666666777888888888889999999888888887788888888899999999999999999998765
Q ss_pred CCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEE
Q 001041 366 EIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 445 (1178)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i 445 (1178)
+.+. ...+.++..+.|+++||+|+|+++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 327 ~~~~---~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~ 402 (582)
T 3b60_A 327 EKDE---GKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILM 402 (582)
T ss_dssp SCCC---CCBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEE
T ss_pred CccC---CCCCCCCCCCcEEEEEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEE
Confidence 5321 111222335679999999999742 257999999999999999999999999999999999999999999999
Q ss_pred CCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCC-CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCC
Q 001041 446 DGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGK-DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLS 524 (1178)
Q Consensus 446 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lS 524 (1178)
||+|+++++.+++|++|+||||+|++|++||+|||.++. +..++++++++++.++++++++.+|+|++|.+|++|.+||
T Consensus 403 ~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LS 482 (582)
T 3b60_A 403 DGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLS 482 (582)
T ss_dssp TTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSC
T ss_pred CCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCC
Confidence 999999999999999999999999999999999999987 6678899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecCh
Q 001041 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTH 604 (1178)
Q Consensus 525 gGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 604 (1178)
||||||++||||++++|++||||||||+||+++++.+.+.++++.+++|+|+||||++.+..||+|++|++|++++.|+|
T Consensus 483 gGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 562 (582)
T 3b60_A 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTH 562 (582)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred hHHhcCCCchHHHHHHHH
Q 001041 605 SKLVEDPEGAYSQLIRLQ 622 (1178)
Q Consensus 605 ~~l~~~~~~~~~~~~~~~ 622 (1178)
+|++++ ++.|+++++.|
T Consensus 563 ~~l~~~-~~~~~~~~~~q 579 (582)
T 3b60_A 563 SELLAQ-HGVYAQLHKMQ 579 (582)
T ss_dssp HHHHHH-TSSHHHHHHHT
T ss_pred HHHHHc-CCHHHHHHHHh
Confidence 999886 67888887654
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=7.1e-75 Score=768.63 Aligned_cols=580 Identities=38% Similarity=0.650 Sum_probs=498.3
Q ss_pred chHHHHhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 44 VPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQ 123 (1178)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 123 (1178)
.++++++++.++. +..++++++++++.+.+.|..+++++.+++.+...............+...+++++++..++.+++
T Consensus 691 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~ 769 (1284)
T 3g5u_A 691 ASFWRILKLNSTE-WPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQ 769 (1284)
T ss_dssp CCTTHHHHHHHHT-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666655443 344556677777788888999999999888765432212222233445556677777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhc-cCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 124 VTCWMITGERQATRIRGLYLKTILRQDVAFFDN-ETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIK 202 (1178)
Q Consensus 124 ~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~-~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (1178)
.+++.+.+.++..++|.+++++++++|++||++ .+++|++++|+++|++.++..++..+..++..+..+++.+++++.+
T Consensus 770 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~ 849 (1284)
T 3g5u_A 770 GFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIY 849 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999995 2489999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Q 001041 203 GWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQ 282 (1178)
Q Consensus 203 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 282 (1178)
+|.+++++++.+|+++++..+..+...+...+..+..++....+.|++.|+++||+|++|+.+.++|.+..+...+...+
T Consensus 850 ~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~ 929 (1284)
T 3g5u_A 850 GWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMK 929 (1284)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888888888887777788888889999999999999999999999999999998888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001041 283 EGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETIN 362 (1178)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 362 (1178)
...+.++..++...+..+.+++.+|+|.+++..+.++.+.++.++.+......++..+......+..+..++.|+++.++
T Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~ 1009 (1284)
T 3g5u_A 930 KAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIE 1009 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 77777777777777777788888899998888888888887776655555555555555555566778889999999998
Q ss_pred cCCCCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCc
Q 001041 363 RKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442 (1178)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~ 442 (1178)
.+++.........++++..|.|+++||+|+|+++++.++|+|+||+|++||++|||||||||||||+++|+|+++|++|+
T Consensus 1010 ~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~ 1089 (1284)
T 3g5u_A 1010 KTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGS 1089 (1284)
T ss_dssp SCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEE
T ss_pred CCCcccccccccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCE
Confidence 87664432222222334567899999999998655567999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCC
Q 001041 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHG 520 (1178)
Q Consensus 443 i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g 520 (1178)
|.+||+|+++++.+++|++|+||||+|.+|++||+|||.++.+ ..++++++++++.+++++++..+|+|+||.+||+|
T Consensus 1090 I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G 1169 (1284)
T 3g5u_A 1090 VFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKG 1169 (1284)
T ss_dssp EESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTS
T ss_pred EEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCC
Confidence 9999999999999999999999999999999999999999875 36789999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEE
Q 001041 521 TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVE 600 (1178)
Q Consensus 521 ~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~ 600 (1178)
.+||||||||+|||||++++|+|||||||||+||+++++.+++.+++..+++|+|+||||++++..||||+||++|+|+|
T Consensus 1170 ~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~ 1249 (1284)
T 3g5u_A 1170 TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKE 1249 (1284)
T ss_dssp CSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEEE
T ss_pred CccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999998888999999999999999999999999999999
Q ss_pred ecChhHHhcCCCchHHHHHHHHhhc
Q 001041 601 KGTHSKLVEDPEGAYSQLIRLQEAN 625 (1178)
Q Consensus 601 ~g~~~~l~~~~~~~~~~~~~~~~~~ 625 (1178)
.|+|+|++++ ++.|+++++.|...
T Consensus 1250 ~g~~~~l~~~-~g~y~~l~~~q~~~ 1273 (1284)
T 3g5u_A 1250 HGTHQQLLAQ-KGIYFSMVSVQAGA 1273 (1284)
T ss_dssp EECHHHHHHS-CSHHHHHHHHHC--
T ss_pred ECCHHHHHhC-CCHHHHHHHHHhhc
Confidence 9999999987 78999999877543
No 11
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.1e-60 Score=584.61 Aligned_cols=464 Identities=21% Similarity=0.304 Sum_probs=416.2
Q ss_pred hHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 707 TRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFA 786 (1178)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1178)
+++++.+.+++++.+++++++.++.+++....+++++.++|....... ......+.++++++.++..++.+++.++..
T Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (587)
T 3qf4_A 11 SKTLARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGD--FSLVLKTGILMLIVALIGAVGGIGCTVFAS 88 (587)
T ss_dssp CCCGGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667778888888888888888888889999999999997654321 122233445555666777788888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001041 787 VAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLA 866 (1178)
Q Consensus 787 ~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l~ 866 (1178)
+.+.++..++|.++|+|++++|++||+ ++++|++++|+++|++.+++.+...+..++..++.++++++++++++|+++
T Consensus 89 ~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~ 166 (587)
T 3qf4_A 89 YASQNFGADLRRDLFRKVLSFSISNVN--RFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLS 166 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHH--HSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 589999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHHH
Q 001041 867 LIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVS 946 (1178)
Q Consensus 867 l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1178)
+++++++|+++++.+++.++.++..++.++..++.++.+.|+++|+++||+|++|+.+.++|.+..++..+...+.....
T Consensus 167 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (587)
T 3qf4_A 167 SVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLI 246 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998899999999999999999999999999999999999999999999999998888888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCC
Q 001041 947 GGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKI 1026 (1178)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~ 1026 (1178)
....++..++..+..++++++|++++..|.+++|.++++..+...+..|+..+......++++..+++|+.++++.+++.
T Consensus 247 ~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~ 326 (587)
T 3qf4_A 247 VFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAI 326 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 88888888888888889999999999999999999999999999999999999999999999999999999999977654
Q ss_pred CCCCCCCCcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECC
Q 001041 1027 DPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG 1106 (1178)
Q Consensus 1027 ~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG 1106 (1178)
++... ....++..|.|+|+||+|+|+++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++||
T Consensus 327 ~~~~~-~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g 404 (587)
T 3qf4_A 327 EEADN-ALALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDE 404 (587)
T ss_dssp CCCTT-CBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESS
T ss_pred CCCCC-ccccCCCCCcEEEEEEEEEcCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECC
Confidence 32211 11223456889999999999743 45799999999999999999999999999999999999999999999999
Q ss_pred cccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1107 VEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1107 ~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
+|+++++.+++|++|++|||||.||++||+|||++|. ++++++++++|++.++++|++++||+|+||.++
T Consensus 405 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~ 474 (587)
T 3qf4_A 405 LDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGR-EDATDDEIVEAAKIAQIHDFIISLPEGYDSRVE 474 (587)
T ss_dssp SBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTC-SSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEEC
T ss_pred EEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccC-CCCCHHHHHHHHHHhCcHHHHHhcccchhhHhc
Confidence 9999999999999999999999999999999999995 478999999999999999999999999999874
No 12
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=9.6e-60 Score=580.60 Aligned_cols=464 Identities=25% Similarity=0.369 Sum_probs=420.5
Q ss_pred chhHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 705 VPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYF 784 (1178)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 (1178)
..+++++.+.+++++.++.++++.++.+++....+++++.+++....... ......++++++++.++..++.+++.++
T Consensus 23 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (598)
T 3qf4_B 23 ATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRR--FDLLPRYMLILGTIYALTSLLFWLQGKI 100 (598)
T ss_dssp HHHHHHGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC--GGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777788888888888888888888889999999999998754321 1223445666677778888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001041 785 FAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQ 864 (1178)
Q Consensus 785 ~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~ 864 (1178)
....+.++..++|.++|+|++++|++||+ ++++|++++|+++|++.+++.+...+..++.+++.++++++++++++|+
T Consensus 101 ~~~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 178 (598)
T 3qf4_B 101 MLTLSQDVVFRLRKELFEKLQRVPVGFFD--RTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVI 178 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTHHHH--HSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 5899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHH
Q 001041 865 LALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGM 944 (1178)
Q Consensus 865 l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~ 944 (1178)
+++++++++|+++++.+++.++.++..++.++..++..+.+.|+++|+++||+||+|+.+.++|.+..++..+...+...
T Consensus 179 l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 258 (598)
T 3qf4_B 179 LSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQI 258 (598)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCC
Q 001041 945 VSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRES 1024 (1178)
Q Consensus 945 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~ 1024 (1178)
..+...++..++..+..++++++|++++..|.+++|.+++++.+...+..|+..+......++++..+++|+.++++.++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 338 (598)
T 3qf4_B 259 FSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEE 338 (598)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888888888888888999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCCCCCCcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEE
Q 001041 1025 KIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITL 1104 (1178)
Q Consensus 1025 ~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~I 1104 (1178)
+.+.. .....++..|+|+|+||+|+|++ +.++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+
T Consensus 339 ~~~~~--~~~~~~~~~~~i~~~~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~ 414 (598)
T 3qf4_B 339 EKDDP--DAVELREVRGEIEFKNVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILV 414 (598)
T ss_dssp CCCCS--SCCCCCSCCCCEEEEEEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEE
T ss_pred CCCCC--CCCCCCCCCCeEEEEEEEEECCC--CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEE
Confidence 54321 11222345688999999999963 346999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1105 DGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1105 DG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
||+|+++++.+++|++|++|||||.||++||+|||.+|.+ +++++++++|++.++++++++++|+||||.++
T Consensus 415 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~ 486 (598)
T 3qf4_B 415 DGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNP-GATDEEIKEAAKLTHSDHFIKHLPEGYETVLT 486 (598)
T ss_dssp TTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSST-TCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCH
T ss_pred CCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCC-CCCHHHHHHHHHHhCCHHHHHhccccccchhc
Confidence 9999999999999999999999999999999999999954 68999999999999999999999999999874
No 13
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=1.4e-59 Score=577.58 Aligned_cols=466 Identities=24% Similarity=0.335 Sum_probs=415.7
Q ss_pred hHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCch-hhhhh----HHHHHHHHHHHHHHHHHHHHH
Q 001041 707 TRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHE-LKKDS----RFWALIYLALGAGSFLLSPAQ 781 (1178)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~ 781 (1178)
+++++.+.+++++.++.++++.++..++....+++++.++|........ ..... ..+.++++++.++..++.+++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (578)
T 4a82_A 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIR 81 (578)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667788888888888888888888888899999999987643211 01111 223344455566777888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 782 SYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTA 861 (1178)
Q Consensus 782 ~~~~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~ 861 (1178)
.++.++.+.++..++|.++|+|++++|++||+ ++++|++++|+++|++.+++++...+..++.+++.+++++++++++
T Consensus 82 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 159 (578)
T 4a82_A 82 QYLAQWTSNKILYDIRKKLYNHLQALSARFYA--NNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFL 159 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH--TSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHc--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 5899999999999999999999999899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhH
Q 001041 862 SWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIR 941 (1178)
Q Consensus 862 ~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~ 941 (1178)
+|++++++++++|+++++.+++.++.++..++.++..++..+.+.|+++|+++||+|++|+.+.++|++..++..+...+
T Consensus 160 ~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 239 (578)
T 4a82_A 160 DVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239 (578)
T ss_dssp CTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhc
Q 001041 942 QGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIID 1021 (1178)
Q Consensus 942 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~ 1021 (1178)
.....+...++...+..+..++++++|++++..|.+++|.++++..+...+..|+..+......++++..+++|+.++++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~ 319 (578)
T 4a82_A 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID 319 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99988888888888888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCe
Q 001041 1022 RESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101 (1178)
Q Consensus 1022 ~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~ 1101 (1178)
.+++.++.. ...+.++..|.|+++||+|+|+++ +.++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+
T Consensus 320 ~~~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~ 397 (578)
T 4a82_A 320 EDYDIKNGV-GAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ 397 (578)
T ss_dssp CCCSSCCCT-TCCCCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEE
T ss_pred CCCcccCCC-CccccCCCCCeEEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcE
Confidence 876543221 111223346889999999999753 457999999999999999999999999999999999999999999
Q ss_pred EEECCcccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1102 ITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1102 I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
|++||+|+++++.+++|++|++|||||.+|++||+|||.+|. ++.+++++++|++.++++|++.++|+|+||.++
T Consensus 398 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~-~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~ 472 (578)
T 4a82_A 398 ILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGR-PTATDEEVVEAAKMANAHDFIMNLPQGYDTEVG 472 (578)
T ss_dssp EEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGC-SSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCC
T ss_pred EEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCC-CCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhc
Confidence 999999999999999999999999999999999999999995 468999999999999999999999999999875
No 14
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=2.8e-58 Score=567.01 Aligned_cols=462 Identities=25% Similarity=0.344 Sum_probs=410.5
Q ss_pred hHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 001041 707 TRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWA-LIYLALGAGSFLLSPAQSYFF 785 (1178)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 785 (1178)
+++++.+.+++++.+++++++.++.+++....+++++.+++....... . ....+. ++++++.++..++.++..++.
T Consensus 13 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (582)
T 3b5x_A 13 FKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAE--S-NFLRILPFMILGLMFVRGLSGFASSYCL 89 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--h-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666777777777778888888888888889998887653211 1 112222 335556677788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001041 786 AVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQL 865 (1178)
Q Consensus 786 ~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l 865 (1178)
...+.++..++|.++++|++++|++||+ ++++|++++|+++|++.+++.+...+..++..++.++++++++++++|++
T Consensus 90 ~~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l 167 (582)
T 3b5x_A 90 SWVSGNVVMQMRRRLFNHFMHMPVRFFD--QESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQL 167 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999999999 58999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHH
Q 001041 866 ALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMV 945 (1178)
Q Consensus 866 ~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 945 (1178)
++++++++|+++++.+.+.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+....
T Consensus 168 ~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 247 (582)
T 3b5x_A 168 SLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSA 247 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888899998889999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCC
Q 001041 946 SGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESK 1025 (1178)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~ 1025 (1178)
.....++..++..+..++++++|++++.+|.+++|.++++..+...+..|+..+......++++..+++|+.++++.+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~ 327 (582)
T 3b5x_A 248 QSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETE 327 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 88888888888888888899999999999999999999999999999999999999999999999999999999987665
Q ss_pred CCCCCCCCCcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEEC
Q 001041 1026 IDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLD 1105 (1178)
Q Consensus 1026 ~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~ID 1105 (1178)
.++. ..+.++..|.|+|+||+|+|+++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++|
T Consensus 328 ~~~~---~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~ 403 (582)
T 3b5x_A 328 RDNG---KYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLD 403 (582)
T ss_pred CCCC---CCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEEC
Confidence 3211 11122335789999999999742 2469999999999999999999999999999999999999999999999
Q ss_pred CcccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1106 GVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1106 G~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
|+|+++++.+++|++|++|||||.+|++||+|||++|..++.+++++++|++.++++++++++|+||||.++
T Consensus 404 g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~ 475 (582)
T 3b5x_A 404 GHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIG 475 (582)
T ss_pred CEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhc
Confidence 999999999999999999999999999999999999852367899999999999999999999999999874
No 15
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=3.4e-58 Score=567.62 Aligned_cols=468 Identities=29% Similarity=0.460 Sum_probs=409.2
Q ss_pred hHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 707 TRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPH-ELKKDSRFWALIYLALGAGSFLLSPAQSYFF 785 (1178)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1178)
+++++.+.+++++.+++++++.++.+++.+..+++++.+++....... ........+.++++++.++..++.+++.++.
T Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (595)
T 2yl4_A 7 ARKLLGLAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLGLSAVFLCGAAANAIRVYLM 86 (595)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555667777777777777788778888888888888886542111 0001122333445555666778888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001041 786 AVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQL 865 (1178)
Q Consensus 786 ~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l 865 (1178)
...+.++..++|.++|+|++++|++||+ ++++|++++|+++|++.++..+...+..++..++.+++.++++++++|++
T Consensus 87 ~~~~~~~~~~lr~~l~~~l~~~~~~~~~--~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l 164 (595)
T 2yl4_A 87 QTSGQRIVNRLRTSLFSSILRQEVAFFD--KTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNL 164 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHH--HSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999999999 58999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHH
Q 001041 866 ALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMV 945 (1178)
Q Consensus 866 ~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 945 (1178)
++++++++|+++++.+++.++.++..++.++..++..+.+.|+++|+++||+|++|+.+.++|.+..++..+...+....
T Consensus 165 ~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 244 (595)
T 2yl4_A 165 ATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFA 244 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999899999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCC
Q 001041 946 SGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESK 1025 (1178)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~ 1025 (1178)
.....++..++..+..++++++|++++.+|.+++|.++++..+...+..|+..+......++++..+++|+.++++.+++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~ 324 (595)
T 2yl4_A 245 RAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPK 324 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 88888888888888888889999999999999999999999999999999999999999999999999999999987765
Q ss_pred CCCCCCCCCcccCcccc-EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEE
Q 001041 1026 IDPSDESGTILEDVKGE-IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITL 1104 (1178)
Q Consensus 1026 ~~~~~~~~~~~~~~~g~-I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~I 1104 (1178)
.++.. ...++++..|+ |+|+||+|+|+++++.++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++
T Consensus 325 ~~~~~-~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~ 403 (595)
T 2yl4_A 325 LPFNE-GVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISL 403 (595)
T ss_dssp SCSSC-SBCCCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEE
T ss_pred cCCCC-CCCCCcCCCCCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEE
Confidence 43211 11111234578 99999999997543357999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCChHHHHHhccccccccccccccHHHHHhcCCCC--CCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1105 DGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGG--DATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1105 DG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~--~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
||+|+++++.+++|++|++|||||.+|++||+|||.+|.+. ..++++++++++.+++++++++||+|+||+++
T Consensus 404 ~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~ 478 (595)
T 2yl4_A 404 DGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVG 478 (595)
T ss_dssp TTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCS
T ss_pred CCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCccccccccc
Confidence 99999999999999999999999999999999999998532 27899999999999999999999999999873
No 16
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=4e-58 Score=565.56 Aligned_cols=463 Identities=27% Similarity=0.406 Sum_probs=411.0
Q ss_pred hhHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHH-HHHHHHHHHHHHHHHHHHHHH
Q 001041 706 PTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFW-ALIYLALGAGSFLLSPAQSYF 784 (1178)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 784 (1178)
.+++++.+.+++++.++.++++.++.+++....+++++.+++....... . ....+ .++++++.++..++.+++.++
T Consensus 12 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (582)
T 3b60_A 12 TFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD--R-SVLLWMPLVVIGLMILRGITSYISSYC 88 (582)
T ss_dssp HHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTT--H-HHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--h-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777777777888888888888888899999887643211 1 11222 233455667778888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001041 785 FAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQ 864 (1178)
Q Consensus 785 ~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~ 864 (1178)
....+.++..++|.++|+|++++|++||+ ++++|++++|+++|++.++..+...+..++..++.+++.++++++++|+
T Consensus 89 ~~~~~~~~~~~lr~~l~~~l~~~~~~~~~--~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 166 (582)
T 3b60_A 89 ISWVSGKVVMTMRRRLFGHMMGMPVAFFD--KQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQ 166 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCSTHHH--HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999 5899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHH
Q 001041 865 LALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGM 944 (1178)
Q Consensus 865 l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~ 944 (1178)
+++++++++|+++++.+++.++.++..++.++..++..+.+.|+++|+++||+|+.|+.+.++|.+..++..+...+...
T Consensus 167 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 246 (582)
T 3b60_A 167 LSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVS 246 (582)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCC
Q 001041 945 VSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRES 1024 (1178)
Q Consensus 945 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~ 1024 (1178)
......++..++..+..++++++|++++..|.+++|.++++..+...+..|+..+......++++..+++|+.++++.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 326 (582)
T 3b60_A 247 ASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQ 326 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888888888888888889999999999999999999999999999999999999999999999999999999998776
Q ss_pred CCCCCCCCCCcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEE
Q 001041 1025 KIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITL 1104 (1178)
Q Consensus 1025 ~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~I 1104 (1178)
+.++. ....++..|.|+++||+|+|+++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++
T Consensus 327 ~~~~~---~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~ 402 (582)
T 3b60_A 327 EKDEG---KRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILM 402 (582)
T ss_dssp SCCCC---CBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEE
T ss_pred CccCC---CCCCCCCCCcEEEEEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEE
Confidence 53221 11122345789999999999732 246999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1105 DGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1105 DG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
||+|+++++.+++|++|++|||||.+|++||+|||.+|..++.+++++++|++.++++++++++|+||||.++
T Consensus 403 ~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~ 475 (582)
T 3b60_A 403 DGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIG 475 (582)
T ss_dssp TTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCC
T ss_pred CCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhcccccccccc
Confidence 9999999999999999999999999999999999999852367899999999999999999999999999875
No 17
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=2e-59 Score=523.09 Aligned_cols=277 Identities=42% Similarity=0.654 Sum_probs=248.6
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCC
Q 001041 344 LSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGS 423 (1178)
Q Consensus 344 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~Gs 423 (1178)
...+..+.++++|+++.++.+++...... ..+.+...+.|+++||+|+|+. ..++|+|+||+|++||+++|||||||
T Consensus 15 ~~~~~~~~~~~~ri~~~l~~~~~~~~~~~-~~~~~~~~~~i~~~~vs~~y~~--~~~vL~~isl~i~~Ge~vaivG~sGs 91 (306)
T 3nh6_A 15 VPRGSHMFIDMENMFDLLKEETEVKDLPG-AGPLRFQKGRIEFENVHFSYAD--GRETLQDVSFTVMPGQTLALVGPSGA 91 (306)
T ss_dssp ----CCTTCCHHHHHHHHHHHHSCCCCTT-CBCCCCSSCCEEEEEEEEESST--TCEEEEEEEEEECTTCEEEEESSSCH
T ss_pred chhHHHHHHHHHHHHHHHhCCcccccccc-ccccCCCCCeEEEEEEEEEcCC--CCceeeeeeEEEcCCCEEEEECCCCc
Confidence 34455667788899988876554332111 1122234578999999999974 35799999999999999999999999
Q ss_pred cHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHH
Q 001041 424 GKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAK 503 (1178)
Q Consensus 424 GKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~ 503 (1178)
|||||+++|+|+++|++|+|.+||.|+.+++..++|++|+||||+|++|++||+|||.++.+..++++++++++.+++.+
T Consensus 92 GKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~ 171 (306)
T 3nh6_A 92 GKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHD 171 (306)
T ss_dssp HHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHH
T ss_pred hHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999988888999999999999999
Q ss_pred HHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcch
Q 001041 504 FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLST 583 (1178)
Q Consensus 504 ~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~ 583 (1178)
++..+|+|++|.+|++|.+|||||||||+|||||+++|+|||||||||+||+++++.|++.|+++.+++|+|+||||+++
T Consensus 172 ~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~ 251 (306)
T 3nh6_A 172 AIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLST 251 (306)
T ss_dssp HHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHH
T ss_pred HHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred hhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHHHhh
Q 001041 584 VRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEA 624 (1178)
Q Consensus 584 ~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 624 (1178)
+..||+|++|++|+|++.|+|+++++. ++.|.++++.+..
T Consensus 252 ~~~aD~i~vl~~G~iv~~G~~~el~~~-~~~y~~l~~~q~~ 291 (306)
T 3nh6_A 252 VVNADQILVIKDGCIVERGRHEALLSR-GGVYADMWQLQQG 291 (306)
T ss_dssp HHTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHHHHC
T ss_pred HHcCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHHHHHHh
Confidence 999999999999999999999999986 6889999876653
No 18
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=2e-50 Score=440.46 Aligned_cols=239 Identities=48% Similarity=0.794 Sum_probs=221.9
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcc
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1178)
..|+++|++++|+.. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|++
T Consensus 6 ~~~~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 6 HDITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CceeEEEEEEEeCCC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 469999999999421 3469999999999999999999999999999999999999999999999999999888888999
Q ss_pred eEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCC
Q 001041 462 IGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1178)
Q Consensus 462 i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~ 541 (1178)
|+||||+|.+|..||+||+.++.+..++++++++++.+++.+.+..+|.|+++.+++++.+||||||||++|||||+++|
T Consensus 85 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p 164 (247)
T 2ff7_A 85 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP 164 (247)
T ss_dssp EEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999986656778888999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHH
Q 001041 542 RILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRL 621 (1178)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 621 (1178)
++||||||||+||+.+.+.+.+.|+++.+++|+|+|||+++.+..||+|++|++|++++.|+++++.+.+.+.|.+++..
T Consensus 165 ~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l~~~ 244 (247)
T 2ff7_A 165 KILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244 (247)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHHHHh
Confidence 99999999999999999999999988877899999999999988899999999999999999999987656778777653
No 19
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=1.2e-49 Score=437.72 Aligned_cols=239 Identities=49% Similarity=0.789 Sum_probs=219.6
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcc
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1178)
+.|+++|++|+|+....+++|+|+||+|++||+++|+||||||||||+++|+|+++| +|+|.++|.++...+...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 469999999999753224699999999999999999999999999999999999987 8999999999988888888999
Q ss_pred eEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCC
Q 001041 462 IGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1178)
Q Consensus 462 i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~ 541 (1178)
|+||||+|.+|+.|++|||.++.....++++.++++.+++.+++..+|+|+++.+++.+.+||||||||++||||++++|
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 174 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999976555677888889999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHH
Q 001041 542 RILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRL 621 (1178)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 621 (1178)
++||||||||+||+.+.+.+.+.++++.+++|+|+|||+++.+..||+|++|++|++++.|+++++.+. .+.|.+++..
T Consensus 175 ~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~ 253 (260)
T 2ghi_A 175 KIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL-NGEYAEMWNM 253 (260)
T ss_dssp SEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHHHh
Confidence 999999999999999999999999988778999999999999888999999999999999999999875 4677777654
Q ss_pred H
Q 001041 622 Q 622 (1178)
Q Consensus 622 ~ 622 (1178)
+
T Consensus 254 ~ 254 (260)
T 2ghi_A 254 Q 254 (260)
T ss_dssp H
T ss_pred h
Confidence 4
No 20
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=4.1e-49 Score=435.81 Aligned_cols=239 Identities=42% Similarity=0.732 Sum_probs=216.7
Q ss_pred cccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhc
Q 001041 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRK 460 (1178)
Q Consensus 381 ~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~ 460 (1178)
.+.|+++|++++|++..+.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|+
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 35699999999996422256999999999999999999999999999999999999999999999999998888888888
Q ss_pred ceEEEcCCCCCCcccHHHHHhcCCCCCCH-HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 461 KIGLVSQEPVLFTGSIKDNIAYGKDDATT-EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 461 ~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
+|+||||+|.+|..||+|||.++.+.... +++..+++..++.+.++.+|+|+++.+++.+.+||||||||++|||||++
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~ 173 (271)
T 2ixe_A 94 QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR 173 (271)
T ss_dssp HEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTT
T ss_pred cEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999997654443 56667777778889999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcCCCchHHH
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 617 (1178)
+|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|++++.|+++++... .+.|.+
T Consensus 174 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~-~~~~~~ 252 (271)
T 2ixe_A 174 KPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER-GGCYRS 252 (271)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHH-TSHHHH
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-cHHHHH
Confidence 9999999999999999999999999988754 7899999999999888999999999999999999999876 467777
Q ss_pred HHH
Q 001041 618 LIR 620 (1178)
Q Consensus 618 ~~~ 620 (1178)
++.
T Consensus 253 ~~~ 255 (271)
T 2ixe_A 253 MVE 255 (271)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 21
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=1.6e-49 Score=433.32 Aligned_cols=234 Identities=45% Similarity=0.774 Sum_probs=214.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
|+++|++|+|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|++|+
T Consensus 2 l~~~~l~~~y~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEEeCC--CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 789999999952 346999999999999999999999999999999999999999999999999998877777788999
Q ss_pred EEcCCCCCCcccHHHHHhcC-CCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCC
Q 001041 464 LVSQEPVLFTGSIKDNIAYG-KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1178)
Q Consensus 464 ~v~Q~~~l~~~ti~~ni~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~ 542 (1178)
||||+|.+|..|++|||.++ .+..++++++++++.+++.+.+..+|.|+++.+++.+.+||||||||++||||++++|+
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 159 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999997 45566788889999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHH
Q 001041 543 ILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIR 620 (1178)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 620 (1178)
+||||||||+||+.+.+.+.+.++++.+++|+|+|||+++.+..||+|++|++|++++.|+++++.+. ...|..++.
T Consensus 160 lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~~ 236 (243)
T 1mv5_A 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVS 236 (243)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-CHHHHHHHH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhc-cHHHHHHHH
Confidence 99999999999999999999999887778999999999998888999999999999999999999765 344555543
No 22
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.5e-48 Score=443.11 Aligned_cols=237 Identities=27% Similarity=0.483 Sum_probs=219.7
Q ss_pred CCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHH
Q 001041 378 DDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW 457 (1178)
Q Consensus 378 ~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~ 457 (1178)
++..+.|+++|++++|+.. +.++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.+++.+.
T Consensus 14 ~~~~~~i~~~~l~~~y~~~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~ 91 (390)
T 3gd7_A 14 WPSGGQMTVKDLTAKYTEG-GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQ 91 (390)
T ss_dssp SSSSCCEEEEEEEEESSSS-SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHH
T ss_pred CCCCCeEEEEEEEEEecCC-CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHH
Confidence 3345679999999999632 3579999999999999999999999999999999999998 8999999999999999999
Q ss_pred HhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHh
Q 001041 458 IRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1178)
Q Consensus 458 ~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal 537 (1178)
+|++|+||+|++.+|..||+||+.+.. ...+++++++++.+++.+.+...|.++++.++++|.+||||||||++|||||
T Consensus 92 ~rr~ig~v~Q~~~lf~~tv~enl~~~~-~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL 170 (390)
T 3gd7_A 92 WRKAFGVIPQKVFIFSGTFRKNLDPNA-AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSV 170 (390)
T ss_dssp HHHTEEEESCCCCCCSEEHHHHHCTTC-CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHH
T ss_pred HhCCEEEEcCCcccCccCHHHHhhhcc-ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999998543 3567889999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcCCCchHHH
Q 001041 538 LKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617 (1178)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 617 (1178)
+++|++||||||||+||+.+...+++.|++..+++|+|+|||+++.+..||+|++|++|+|++.|+++++.+.+...|..
T Consensus 171 ~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p~~~~va 250 (390)
T 3gd7_A 171 LSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVA 250 (390)
T ss_dssp HTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCCSBHHHH
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCchHHH
Confidence 99999999999999999999999999998877789999999999988889999999999999999999999887666554
No 23
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1.9e-46 Score=404.86 Aligned_cols=214 Identities=28% Similarity=0.482 Sum_probs=194.6
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcc
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1178)
+.|+++|++++|+.. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 5 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~ 70 (229)
T 2pze_A 5 TEVVMENVTAFWEEG-GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 70 (229)
T ss_dssp EEEEEEEEEECSSTT-SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------C
T ss_pred ceEEEEEEEEEeCCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------E
Confidence 469999999999632 35799999999999999999999999999999999999999999999998 6
Q ss_pred eEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCC
Q 001041 462 IGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1178)
Q Consensus 462 i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~ 541 (1178)
|+|+||+|++|++|++||+.++.. ....+...+++.+++.+.+..+|.++++.+++++.+||||||||++||||++++|
T Consensus 71 i~~v~q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p 149 (229)
T 2pze_A 71 ISFCSQFSWIMPGTIKENIIFGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA 149 (229)
T ss_dssp EEEECSSCCCCSBCHHHHHHTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCC
T ss_pred EEEEecCCcccCCCHHHHhhccCC-cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999998754 3445566677778888889999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHH-HHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcC
Q 001041 542 RILLLDEATSALDAESEKVVQEA-LDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~-i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
++||||||||+||+++.+.+.+. +++..+++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 150 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 219 (229)
T 2pze_A 150 DLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL 219 (229)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC
T ss_pred CEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 99999999999999999999886 4555567899999999999888999999999999999999999765
No 24
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.4e-46 Score=407.68 Aligned_cols=223 Identities=32% Similarity=0.546 Sum_probs=199.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.|+++|++++|+.. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +|
T Consensus 3 ~l~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i 68 (237)
T 2cbz_A 3 SITVRNATFTWARS-DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SV 68 (237)
T ss_dssp CEEEEEEEEESCTT-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CE
T ss_pred eEEEEEEEEEeCCC-CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EE
Confidence 38999999999632 35799999999999999999999999999999999999999999999998 59
Q ss_pred EEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCC
Q 001041 463 GLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1178)
Q Consensus 463 ~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~ 542 (1178)
+||||+|++++.|++|||.++.. ...++..++.+.+++.+.+..+|.|+++.+++++.+||||||||++||||++++|+
T Consensus 69 ~~v~Q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ 147 (237)
T 2cbz_A 69 AYVPQQAWIQNDSLRENILFGCQ-LEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNAD 147 (237)
T ss_dssp EEECSSCCCCSEEHHHHHHTTSC-CCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEEcCCCcCCCcCHHHHhhCccc-cCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998754 23345566777777777888889999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHH---HHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHH
Q 001041 543 ILLLDEATSALDAESEKVVQEALD---RIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLI 619 (1178)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~---~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 619 (1178)
+||||||||+||+.+.+.+.+.+. +..+++|+|+|||+++.+..||+|++|++|++++.|+++++.+. .+.|.+++
T Consensus 148 lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~ 226 (237)
T 2cbz_A 148 IYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR-DGAFAEFL 226 (237)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHH-TSHHHHHH
T ss_pred EEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhc-cHHHHHHH
Confidence 999999999999999999998884 34458999999999999888999999999999999999999875 56676665
Q ss_pred HH
Q 001041 620 RL 621 (1178)
Q Consensus 620 ~~ 621 (1178)
..
T Consensus 227 ~~ 228 (237)
T 2cbz_A 227 RT 228 (237)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 25
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=3.7e-45 Score=413.87 Aligned_cols=230 Identities=30% Similarity=0.501 Sum_probs=193.2
Q ss_pred ccEEEEeEEEECCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHH---
Q 001041 382 GDIELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW--- 457 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~--- 457 (1178)
..|+++|++++|+... ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 4699999999996432 246999999999999999999999999999999999999999999999999999988765
Q ss_pred HhcceEEEcCCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHH
Q 001041 458 IRKKIGLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1178)
Q Consensus 458 ~r~~i~~v~Q~~~l~~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lA 534 (1178)
+|++|+||+|+|.+|. .||+||+.++.. ..+.++..+.. .+.++.+ |+.........+||||||||++||
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v-----~~lL~~v--gL~~~~~~~~~~LSGGqkQRVaIA 175 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV-----TELLSLV--GLGDKHDSYPSNLSGGQKQRVAIA 175 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHH-----HHHHHHH--TCGGGTTCCTTTSCHHHHHHHHHH
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHH-----HHHHHHc--CCchHhcCChhhCCHHHHHHHHHH
Confidence 4788999999998885 599999998631 12232222111 1122222 555566777889999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcCC
Q 001041 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDP 611 (1178)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 611 (1178)
|||+.+|++||||||||+||+.+.+.+.+.++++.+ +.|+|+|||+++.+.. ||+|++|++|+|++.|+++++..++
T Consensus 176 rAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~p 255 (366)
T 3tui_C 176 RALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHP 255 (366)
T ss_dssp HHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHSSC
T ss_pred HHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 999999999999999999999999999999988753 7999999999999865 9999999999999999999999876
Q ss_pred CchHHHH
Q 001041 612 EGAYSQL 618 (1178)
Q Consensus 612 ~~~~~~~ 618 (1178)
...+.+.
T Consensus 256 ~~~~~~~ 262 (366)
T 3tui_C 256 KTPLAQK 262 (366)
T ss_dssp CSHHHHH
T ss_pred CcHHHHH
Confidence 6655443
No 26
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=6.1e-45 Score=401.53 Aligned_cols=219 Identities=26% Similarity=0.510 Sum_probs=185.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecC--CCCHHHHhc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK--EFQLQWIRK 460 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~--~~~~~~~r~ 460 (1178)
.|+++|++++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+
T Consensus 7 ~l~i~~ls~~y~~~--~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 7 ILKVEELNYNYSDG--THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEEECTTS--CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred EEEEEEEEEEECCC--CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 58999999999642 35999999999999999999999999999999999999999999999999984 334456788
Q ss_pred ceEEEcCCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHH
Q 001041 461 KIGLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1178)
Q Consensus 461 ~i~~v~Q~~--~l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARa 536 (1178)
+|+||||+| .+|..||+||+.|+... .+.++..+.+ .+.++.+ |++........+||||||||++||||
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--~L~~~~~~~~~~LSgGqkQRv~iAra 157 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRV-----DNALKRT--GIEHLKDKPTHCLSFGQKKRVAIAGV 157 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHH-----HHHHHHT--TCGGGTTSBGGGSCHHHHHHHHHHHH
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CCchhhcCCcccCCHHHHHHHHHHHH
Confidence 999999998 57889999999986321 2333322211 1223333 55556667778999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
|+.+|++||||||||+||+.+.+.+.+.++++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++..+
T Consensus 158 L~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 158 LVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp HTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHH
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999998875 38999999999999865 999999999999999999998764
No 27
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=3.9e-45 Score=395.95 Aligned_cols=216 Identities=28% Similarity=0.444 Sum_probs=179.7
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHH----
Q 001041 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI---- 458 (1178)
Q Consensus 384 i~~~~~~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~---- 458 (1178)
|+++|++++|+... ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999996432 2469999999999999999999999999999999999999999999999999999887654
Q ss_pred hcceEEEcCCCCCCcc-cHHHHHhcCC-----CCCCHHH-HHHHHHHhcHHHHHHhCCCCccch-hcCCCCCCChHHHHH
Q 001041 459 RKKIGLVSQEPVLFTG-SIKDNIAYGK-----DDATTEE-IRVATELANAAKFIDKLPQGIDTL-VGEHGTQLSGGQKQR 530 (1178)
Q Consensus 459 r~~i~~v~Q~~~l~~~-ti~~ni~~~~-----~~~~~~~-~~~~~~~~~~~~~i~~~~~g~~t~-~~~~g~~lSgGqkqr 530 (1178)
|++|+||+|+|.+|.. ||+||+.++. .....++ ..++. +.++.+ |+... ......+||||||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~------~~l~~~--~l~~~~~~~~~~~LSgGq~QR 153 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRAL------ECLKMA--ELEERFANHKPNQLSGGQQQR 153 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHH------HHHHHT--TCCGGGTTCCGGGSCHHHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHH------HHHHHC--CCChhhhhCChhhCCHHHHHH
Confidence 4569999999999875 9999998742 1122222 22222 222222 44433 366778999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHH
Q 001041 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 607 (1178)
++|||||+.+|++||||||||+||+.+...+.+.++++.+ ++|+|+|||+++....||+|++|++|++++.++.+++
T Consensus 154 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 154 VAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGF 232 (235)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC--
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhhh
Confidence 9999999999999999999999999999999999988753 8999999999998777999999999999999887765
No 28
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.5e-44 Score=390.05 Aligned_cols=219 Identities=25% Similarity=0.437 Sum_probs=186.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHH-hcc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI-RKK 461 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~-r~~ 461 (1178)
.++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... |++
T Consensus 6 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred eEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 469999999999999999999999999999999999999999999999999988876654 456
Q ss_pred eEEEcCCCCCCcc-cHHHHHhcCC-CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 462 IGLVSQEPVLFTG-SIKDNIAYGK-DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 462 i~~v~Q~~~l~~~-ti~~ni~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
|+|+||+|.+|.. |++||+.++. +....++..+. +.+.++.++ |++...++...+||||||||++|||||++
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~-----~~~~l~~~~-~l~~~~~~~~~~LSgGq~qrv~lAraL~~ 156 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRD-----LEWIFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHH-----HHHHHHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHH-----HHHHHHHcc-cHhhHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 9999999999876 9999999864 21122222221 123344443 46666777888999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcC
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
+|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 157 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 229 (240)
T 1ji0_A 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 999999999999999999999999998875 5799999999998775 5999999999999999999998753
No 29
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1e-43 Score=402.39 Aligned_cols=221 Identities=31% Similarity=0.535 Sum_probs=185.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCC--CCHHHHhc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE--FQLQWIRK 460 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~--~~~~~~r~ 460 (1178)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+ ......++
T Consensus 4 ~l~i~~ls~~y~~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQN---TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 4899999999963 469999999999999999999999999999999999999999999999999832 12223467
Q ss_pred ceEEEcCCCCCCc-ccHHHHHhcCCCCC---CHH---HHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHH
Q 001041 461 KIGLVSQEPVLFT-GSIKDNIAYGKDDA---TTE---EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1178)
Q Consensus 461 ~i~~v~Q~~~l~~-~ti~~ni~~~~~~~---~~~---~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~l 533 (1178)
+|+||+|++.+|. .||+|||.|+.... ..+ ++.++++.+ |++........+||||||||++|
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~-----------gL~~~~~r~~~~LSGGq~QRVal 149 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELT-----------GISELAGRYPHELSGGQQQRAAL 149 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHH-----------TCGGGTTSCGGGSCHHHHHHHHH
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHc-----------CCchHhcCChhhCCHHHHHHHHH
Confidence 8999999999985 69999999975421 122 222333222 55556677778999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcC
Q 001041 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
||||+.+|++||||||||+||+.+...+.+.+.++. .+.|+|+|||+++.+. .||||++|++|+|++.|+++++..+
T Consensus 150 ArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~ 229 (359)
T 3fvq_A 150 ARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ 229 (359)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhC
Confidence 999999999999999999999999999988776653 4789999999999876 4999999999999999999999987
Q ss_pred CCchHHH
Q 001041 611 PEGAYSQ 617 (1178)
Q Consensus 611 ~~~~~~~ 617 (1178)
+...|..
T Consensus 230 p~~~~~a 236 (359)
T 3fvq_A 230 PADLDAA 236 (359)
T ss_dssp CSCHHHH
T ss_pred cccHHHH
Confidence 6655543
No 30
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1.5e-43 Score=389.89 Aligned_cols=213 Identities=27% Similarity=0.426 Sum_probs=185.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.+.+++.+
T Consensus 11 ~l~~~~l~~~~~~---~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 11 LLEASHLHYHVQQ---QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred eEEEEeEEEEeCC---eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 5899999999963 4699999999999999999999999999999999999999999999999999999999899999
Q ss_pred EEEcCCCCC-CcccHHHHHhcCCCCCC----HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHh
Q 001041 463 GLVSQEPVL-FTGSIKDNIAYGKDDAT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1178)
Q Consensus 463 ~~v~Q~~~l-~~~ti~~ni~~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal 537 (1178)
+|++|++.+ +..||+||+.++..... .+++.++++.+ |+.........+||||||||++|||||
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGq~QRv~iAraL 156 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQT-----------DCLALAQRDYRVLSGGEQQRVQLARVL 156 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHT-----------TCSTTTTSBGGGCCHHHHHHHHHHHHH
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHc-----------CChhHhcCCcccCCHHHHHHHHHHHHH
Confidence 999999976 57899999998753222 23333333333 333344555678999999999999999
Q ss_pred cc------CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHh
Q 001041 538 LK------DPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLV 608 (1178)
Q Consensus 538 ~~------~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 608 (1178)
++ +|++||||||||+||+.+.+.+.+.++++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++.
T Consensus 157 ~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 157 AQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp HHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred hcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99 9999999999999999999999999988753 469999999999986 59999999999999999999986
Q ss_pred c
Q 001041 609 E 609 (1178)
Q Consensus 609 ~ 609 (1178)
.
T Consensus 237 ~ 237 (266)
T 4g1u_C 237 N 237 (266)
T ss_dssp C
T ss_pred C
Confidence 5
No 31
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.6e-43 Score=388.08 Aligned_cols=219 Identities=33% Similarity=0.548 Sum_probs=185.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecC--CCCHHHHhc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK--EFQLQWIRK 460 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~--~~~~~~~r~ 460 (1178)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+
T Consensus 24 ~l~i~~l~~~y~~---~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFGS---LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 4999999999953 46999999999999999999999999999999999999999999999999985 344566788
Q ss_pred ceEEEcCCCCCCcc-cHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHH
Q 001041 461 KIGLVSQEPVLFTG-SIKDNIAYGK---DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1178)
Q Consensus 461 ~i~~v~Q~~~l~~~-ti~~ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARa 536 (1178)
+|+||||++.+|.. |++||+.++. .....++..+ .+.+.++.+ |++........+||||||||++||||
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LSgGqkQRv~lAra 173 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEA-----KAMELLDKV--GLKDKAHAYPDSLSGGQAQRVAIARA 173 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHH-----HHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CCchHhcCChhhCCHHHHHHHHHHHH
Confidence 89999999988865 9999998852 1122222111 112333433 55555667778999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcCC
Q 001041 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDP 611 (1178)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 611 (1178)
|+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|++++.|+++++.+.+
T Consensus 174 L~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 250 (263)
T 2olj_A 174 LAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRP 250 (263)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 999999999999999999999999999998875 4789999999999986 49999999999999999999997654
No 32
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.4e-43 Score=403.86 Aligned_cols=224 Identities=26% Similarity=0.446 Sum_probs=190.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. +++|
T Consensus 3 ~l~~~~l~~~yg~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~i 77 (381)
T 3rlf_A 3 SVQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGV 77 (381)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCE
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCE
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999888765 3679
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 463 GLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
+||+|++.+|. .||+|||.|+.. ..+.++..+. +.+.++.+ |++........+||||||||++|||||+.
T Consensus 78 g~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~-----v~~~l~~~--~L~~~~~r~p~~LSGGqrQRVaiArAL~~ 150 (381)
T 3rlf_A 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQR-----VNQVAEVL--QLAHLLDRKPKALSGGQRQRVAIGRTLVA 150 (381)
T ss_dssp EEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHH-----HHHHHHHT--TCGGGTTCCGGGSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCchhhcCChhHCCHHHHHHHHHHHHHHc
Confidence 99999999985 599999998632 1233322221 11223333 55666677788999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcCCCchHH
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 616 (1178)
+|++||||||||+||+.....+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|++.|+++++...+...|.
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p~~~~v 230 (381)
T 3rlf_A 151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFV 230 (381)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHH
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCccHHH
Confidence 9999999999999999999999999988753 799999999999875 4999999999999999999999987766665
Q ss_pred HH
Q 001041 617 QL 618 (1178)
Q Consensus 617 ~~ 618 (1178)
..
T Consensus 231 ~~ 232 (381)
T 3rlf_A 231 AG 232 (381)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 33
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=4e-43 Score=383.72 Aligned_cols=217 Identities=28% Similarity=0.454 Sum_probs=183.1
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcc
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1178)
+.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ....+|++
T Consensus 14 ~~l~i~~l~~~y~~---~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~ 89 (256)
T 1vpl_A 14 GAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 89 (256)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CeEEEEEEEEEECC---EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhc
Confidence 46999999999953 469999999999999999999999999999999999999999999999999876 45667889
Q ss_pred eEEEcCCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhc
Q 001041 462 IGLVSQEPVLFTG-SIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1178)
Q Consensus 462 i~~v~Q~~~l~~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~ 538 (1178)
|+|+||+|.+|.. |++||+.++.. ....++..+. +.+.++.+ |++........+||||||||++|||||+
T Consensus 90 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~LSgGq~qRv~lAraL~ 162 (256)
T 1vpl_A 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEM-----VERATEIA--GLGEKIKDRVSTYSKGMVRKLLIARALM 162 (256)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHH-----HHHHHHHH--CCGGGGGSBGGGCCHHHHHHHHHHHHHT
T ss_pred EEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHH-----HHHHHHHC--CCchHhcCChhhCCHHHHHHHHHHHHHH
Confidence 9999999988865 99999987421 1122211111 11222222 4555556667889999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhc
Q 001041 539 KDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1178)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 609 (1178)
.+|++||||||||+||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 163 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 163 VNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred cCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 9999999999999999999999999998875 47899999999999876 99999999999999999999864
No 34
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=7.5e-43 Score=383.68 Aligned_cols=214 Identities=23% Similarity=0.395 Sum_probs=183.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHH-HHhcc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ-WIRKK 461 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~-~~r~~ 461 (1178)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ..|++
T Consensus 7 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 7 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEeeeEEEECC---EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999877653 45778
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCCC--C-------------CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCCh
Q 001041 462 IGLVSQEPVLFT-GSIKDNIAYGKDD--A-------------TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSG 525 (1178)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~ni~~~~~~--~-------------~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSg 525 (1178)
|+||||+|.+|. .|++||+.++... . ..++.. ..+.+.++.+ |++....+...+|||
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSg 156 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMV-----EKAFKILEFL--KLSHLYDRKAGELSG 156 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHH-----HHHHHHHHHT--TCGGGTTSBGGGSCH
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHH-----HHHHHHHHHc--CCchhhCCCchhCCH
Confidence 999999998875 6999999986422 1 111111 1223445554 677777788889999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc-CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecC
Q 001041 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGT 603 (1178)
Q Consensus 526 Gqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~ 603 (1178)
|||||++||||++.+|++||||||||+||+.+.+.+.+.++++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+
T Consensus 157 GqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~ 236 (257)
T 1g6h_A 157 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 236 (257)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeC
Confidence 999999999999999999999999999999999999999988754 789999999999886 599999999999999999
Q ss_pred hhH
Q 001041 604 HSK 606 (1178)
Q Consensus 604 ~~~ 606 (1178)
+++
T Consensus 237 ~~~ 239 (257)
T 1g6h_A 237 GEE 239 (257)
T ss_dssp SHH
T ss_pred HHH
Confidence 988
No 35
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=5.8e-43 Score=384.99 Aligned_cols=220 Identities=30% Similarity=0.530 Sum_probs=183.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCC----------
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE---------- 452 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~---------- 452 (1178)
.|+++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 6 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 6 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 4899999999953 469999999999999999999999999999999999999999999999999862
Q ss_pred CCH---HHHhcceEEEcCCCCCCcc-cHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCccch-hcCCCCCCC
Q 001041 453 FQL---QWIRKKIGLVSQEPVLFTG-SIKDNIAYGK---DDATTEEIRVATELANAAKFIDKLPQGIDTL-VGEHGTQLS 524 (1178)
Q Consensus 453 ~~~---~~~r~~i~~v~Q~~~l~~~-ti~~ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~-~~~~g~~lS 524 (1178)
.+. ..+|++|+||+|++.+|.. ||+||+.++. .....++..+ .+.+.++.+ |++.. ......+||
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~~LS 155 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARE-----RALKYLAKV--GIDERAQGKYPVHLS 155 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHH-----HHHHHHHHT--TCCHHHHTSCGGGSC
T ss_pred cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHH-----HHHHHHHHc--CCCchhhcCCcccCC
Confidence 443 3457789999999988865 9999998742 1122221111 112233333 45555 566778899
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhh-ccCEEEEEeCCEEEEec
Q 001041 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 525 gGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g 602 (1178)
||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 156 gGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g 235 (262)
T 1b0u_A 156 GGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 235 (262)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999998875 3789999999999986 59999999999999999
Q ss_pred ChhHHhcCCC
Q 001041 603 THSKLVEDPE 612 (1178)
Q Consensus 603 ~~~~l~~~~~ 612 (1178)
+++++...+.
T Consensus 236 ~~~~~~~~~~ 245 (262)
T 1b0u_A 236 DPEQVFGNPQ 245 (262)
T ss_dssp CHHHHHHSCC
T ss_pred CHHHHHhCcc
Confidence 9999987543
No 36
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.3e-42 Score=395.27 Aligned_cols=222 Identities=30% Similarity=0.528 Sum_probs=186.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+.+.. +++|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (359)
T 2yyz_A 3 SIRVVNLKKYFGK---VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREV 77 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcE
Confidence 3899999999953 4699999999999999999999999999999999999999999999999999887654 5689
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCCCC--HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 463 GLVSQEPVLFT-GSIKDNIAYGKDDAT--TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~ni~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
+||+|++.+|. .||+|||.|+..... .++..+ .+.+.++.+ |++........+||||||||++|||||+.
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~-----~v~~~l~~~--~L~~~~~r~~~~LSgGq~QRvalArAL~~ 150 (359)
T 2yyz_A 78 GMVFQNYALYPHMTVFENIAFPLRARRISKDEVEK-----RVVEIARKL--LIDNLLDRKPTQLSGGQQQRVALARALVK 150 (359)
T ss_dssp EEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTH-----HHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 99999999885 599999999753221 111111 112223333 55555666778999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcCCCchHH
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 616 (1178)
+|++||||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|++.|+++++..++...|.
T Consensus 151 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~ 230 (359)
T 2yyz_A 151 QPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNMFV 230 (359)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcccHHH
Confidence 9999999999999999999999999988753 789999999999875 5999999999999999999999887655443
No 37
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=4.8e-43 Score=376.96 Aligned_cols=211 Identities=26% Similarity=0.403 Sum_probs=177.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHH---Hh
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW---IR 459 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~---~r 459 (1178)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +|
T Consensus 4 ~l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 4899999999963 46999999999999999999999999999999999999999999999999998877543 34
Q ss_pred -cceEEEcCCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHH
Q 001041 460 -KKIGLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1178)
Q Consensus 460 -~~i~~v~Q~~~l~~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lAR 535 (1178)
++|+||||+|.+|. .|++||+.++.. ....++..+ .+.+.++.+ |++........+||||||||++|||
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lar 153 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKE-----RGEYLLSEL--GLGDKLSRKPYELSGGEQQRVAIAR 153 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHH-----HHHHHHHHT--TCTTCTTCCGGGSCHHHHHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHH
Confidence 68999999998885 699999987531 111111111 122333433 5555566677899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhccCEEEEEeCCEEEEecC
Q 001041 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603 (1178)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~ 603 (1178)
|++.+|++|||||||++||+.+.+.+.+.++++. +++|+|+|||+++.+..||+|++|++|++++.|+
T Consensus 154 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 154 ALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred HHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 9999999999999999999999999999998874 4789999999999887799999999999999886
No 38
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=5.5e-43 Score=389.00 Aligned_cols=209 Identities=28% Similarity=0.484 Sum_probs=175.5
Q ss_pred cccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhc
Q 001041 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRK 460 (1178)
Q Consensus 381 ~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~ 460 (1178)
.+.|+++|++|.+ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 38 ~~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g------------- 99 (290)
T 2bbs_A 38 DDSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99 (290)
T ss_dssp ------------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------
T ss_pred CceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------
Confidence 3469999999864 3599999999999999999999999999999999999999999999998
Q ss_pred ceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccC
Q 001041 461 KIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1178)
Q Consensus 461 ~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~ 540 (1178)
+|+|+||+|.+|.+|++||+. +.. ....+...+++.+++.+.+..+|.++++.+++.+.+||||||||++||||++++
T Consensus 100 ~i~~v~Q~~~l~~~tv~enl~-~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~ 177 (290)
T 2bbs_A 100 RISFCSQNSWIMPGTIKENII-GVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKD 177 (290)
T ss_dssp CEEEECSSCCCCSSBHHHHHH-TTC-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSC
T ss_pred EEEEEeCCCccCcccHHHHhh-Ccc-cchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCC
Confidence 699999999999999999998 543 344455667777888888999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHH-HHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhc
Q 001041 541 PRILLLDEATSALDAESEKVVQEAL-DRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVE 609 (1178)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i-~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1178)
|++||||||||+||+.+.+.+.+.+ +++.+++|+|+|||+++.+..||+|++|++|++++.|+++++..
T Consensus 178 p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 178 ADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhh
Confidence 9999999999999999999998864 44446899999999999988899999999999999999999865
No 39
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.3e-42 Score=383.58 Aligned_cols=215 Identities=30% Similarity=0.523 Sum_probs=182.0
Q ss_pred EEEEeEEEECCCCCC--CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcc
Q 001041 384 IELRDVYFSYPARPN--EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~--~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1178)
|+++|++++|+.... .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... .+|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 789999999962111 4699999999999999999999999999999999999999999999999988643 66788
Q ss_pred eEEEcCCC--CCCcccHHHHHhcCCCC-----CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHH
Q 001041 462 IGLVSQEP--VLFTGSIKDNIAYGKDD-----ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1178)
Q Consensus 462 i~~v~Q~~--~l~~~ti~~ni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lA 534 (1178)
|+||+|+| .++..|++||+.++... ...+++.++++..++.+ .........+||||||||++||
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~---------~~~~~~~~~~LSgGq~qRv~lA 150 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDF---------DSFKDRVPFFLSGGEKRRVAIA 150 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCH---------HHHTTCCGGGSCHHHHHHHHHH
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCC---------cccccCChhhCCHHHHHHHHHH
Confidence 99999997 56789999999986422 12344555555544430 0334455578999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
|||+++|++||||||||+||+.+.+.+.+.++++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 151 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 151 SVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999998874 47899999999999875 999999999999999999988754
No 40
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=7.3e-43 Score=386.65 Aligned_cols=217 Identities=24% Similarity=0.369 Sum_probs=183.4
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecC--CCCHHHHh
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK--EFQLQWIR 459 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~--~~~~~~~r 459 (1178)
..|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|
T Consensus 20 ~~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 96 (279)
T 2ihy_A 20 MLIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVR 96 (279)
T ss_dssp EEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHH
T ss_pred ceEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHc
Confidence 35999999999963 46999999999999999999999999999999999999999999999999987 77777788
Q ss_pred cceEEEcCCCCC-Ccc--cHHHHHhcCCCC-------CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHH
Q 001041 460 KKIGLVSQEPVL-FTG--SIKDNIAYGKDD-------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1178)
Q Consensus 460 ~~i~~v~Q~~~l-~~~--ti~~ni~~~~~~-------~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkq 529 (1178)
++|+||+|+|.+ |.. |++||+.++... ..++...+ +.+.++.+ |++........+|||||||
T Consensus 97 ~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~--gl~~~~~~~~~~LSgGqkq 168 (279)
T 2ihy_A 97 QHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNE------AHQLLKLV--GMSAKAQQYIGYLSTGEKQ 168 (279)
T ss_dssp TTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHH------HHHHHHHT--TCGGGTTSBGGGSCHHHHH
T ss_pred CcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHH------HHHHHHHc--CChhHhcCChhhCCHHHHH
Confidence 899999999864 444 999999986421 11211111 12233333 5665667777899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc-CCeE--EEEecCcchhh-ccCEEEEEeCCEEEEecChh
Q 001041 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTT--VIVAHRLSTVR-NADMIAVIHRGKIVEKGTHS 605 (1178)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~--i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~ 605 (1178)
|++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+ |+|||+++.+. .||+|++|++|++++.|+++
T Consensus 169 Rv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 248 (279)
T 2ihy_A 169 RVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVE 248 (279)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHH
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999988753 7899 99999999885 59999999999999999999
Q ss_pred HHhc
Q 001041 606 KLVE 609 (1178)
Q Consensus 606 ~l~~ 609 (1178)
++.+
T Consensus 249 ~~~~ 252 (279)
T 2ihy_A 249 DILT 252 (279)
T ss_dssp HHCS
T ss_pred HHhc
Confidence 8864
No 41
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=7.3e-42 Score=428.36 Aligned_cols=196 Identities=24% Similarity=0.328 Sum_probs=157.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.+...|++++|++ +++|+|+||++++|++++|+||||||||||+++|.| |+| +|.+... +.++
T Consensus 435 ~L~~~~ls~~yg~---~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~~ 497 (986)
T 2iw3_A 435 DLCNCEFSLAYGA---KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECRT 497 (986)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSCE
T ss_pred eeEEeeEEEEECC---EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------ceeE
Confidence 5777899999963 469999999999999999999999999999999996 554 4543311 1247
Q ss_pred EEEcCCC-CC-CcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccC
Q 001041 463 GLVSQEP-VL-FTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1178)
Q Consensus 463 ~~v~Q~~-~l-~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~ 540 (1178)
+|++|++ .+ ...|++||+.+..... .+++.+.++..++.+ ........+||||||||++||||++.+
T Consensus 498 ~~v~q~~~~~~~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~~----------~~~~~~~~~LSGGqkQRvaLArAL~~~ 566 (986)
T 2iw3_A 498 VYVEHDIDGTHSDTSVLDFVFESGVGT-KEAIKDKLIEFGFTD----------EMIAMPISALSGGWKMKLALARAVLRN 566 (986)
T ss_dssp EETTCCCCCCCTTSBHHHHHHTTCSSC-HHHHHHHHHHTTCCH----------HHHHSBGGGCCHHHHHHHHHHHHHHTT
T ss_pred EEEcccccccccCCcHHHHHHHhhcCH-HHHHHHHHHHcCCCh----------hhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 9999986 33 4679999998621111 455555555554411 123344467999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEE-EecChhHHh
Q 001041 541 PRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIV-EKGTHSKLV 608 (1178)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~-~~g~~~~l~ 608 (1178)
|++|||||||++||+.+...+.+.|++ .++|+|+|||+++.+.. ||+|++|++|+++ ..|+++++.
T Consensus 567 P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~ 634 (986)
T 2iw3_A 567 ADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFV 634 (986)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHH
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHH
Confidence 999999999999999999999999988 68999999999999875 9999999999997 578887764
No 42
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.3e-42 Score=395.53 Aligned_cols=222 Identities=36% Similarity=0.523 Sum_probs=186.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+.. +++|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (362)
T 2it1_A 3 EIKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNV 77 (362)
T ss_dssp CEEEEEEEEESSS---SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcE
Confidence 3899999999953 4699999999999999999999999999999999999999999999999999887654 4679
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 463 GLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
+||+|++.+|. .||+|||.|+.. ....++..+ .+.+.++.+ |++........+||||||||++|||||+.
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~-----~v~~~l~~~--~L~~~~~r~~~~LSGGq~QRvalArAL~~ 150 (362)
T 2it1_A 78 GLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDK-----KVREVAKML--HIDKLLNRYPWQLSGGQQQRVAIARALVK 150 (362)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHH-----HHHHHHHHT--TCTTCTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCchHhhCChhhCCHHHHHHHHHHHHHHc
Confidence 99999999985 599999998632 122222111 112223333 55555666778999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcCCCchHH
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 616 (1178)
+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|++.|+++++..++...|.
T Consensus 151 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~~ 230 (362)
T 2it1_A 151 EPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPKYKFV 230 (362)
T ss_dssp CCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccchHH
Confidence 9999999999999999999999999988753 789999999999875 5999999999999999999999887655443
No 43
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=2.8e-42 Score=394.27 Aligned_cols=222 Identities=26% Similarity=0.451 Sum_probs=183.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+.+.. +++|
T Consensus 11 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 85 (372)
T 1v43_A 11 EVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 85 (372)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcE
Confidence 4999999999953 4699999999999999999999999999999999999999999999999999877654 4679
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 463 GLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
+||+|++.+|. .||+|||.|+... ...++..+ .+.+.++.+ |++........+||||||||++|||||+.
T Consensus 86 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~-----~v~~~l~~~--~L~~~~~r~~~~LSGGq~QRvalArAL~~ 158 (372)
T 1v43_A 86 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDK-----RVRWAAELL--QIEELLNRYPAQLSGGQRQRVAVARAIVV 158 (372)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHH-----HHHHHHHHT--TCGGGTTSCTTTCCSSCHHHHHHHHHHTT
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999885 6999999997542 22222211 112233333 56666677788999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcCCCchHH
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 616 (1178)
+|++||||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|++.|+++++..++...|.
T Consensus 159 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~ 238 (372)
T 1v43_A 159 EPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFV 238 (372)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHH
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcccHHH
Confidence 9999999999999999999999999988753 789999999999875 5999999999999999999999887655443
No 44
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.6e-42 Score=393.24 Aligned_cols=223 Identities=29% Similarity=0.519 Sum_probs=186.6
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcc
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1178)
..|+++|++++|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .+++
T Consensus 13 ~~l~~~~l~~~y~g--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 88 (355)
T 1z47_A 13 MTIEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRN 88 (355)
T ss_dssp EEEEEEEEEECCTT--STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSS
T ss_pred ceEEEEEEEEEEcC--CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCc
Confidence 45999999999932 2469999999999999999999999999999999999999999999999999987654 3678
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhc
Q 001041 462 IGLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1178)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~ 538 (1178)
|+||+|++.+|. .||+|||.|+.. ....++..+ .+.+.++.+ |++........+||||||||++|||||+
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~-----~v~~~l~~~--gL~~~~~r~~~~LSGGq~QRvalArAL~ 161 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDA-----RVRELLRFM--RLESYANRFPHELSGGQQQRVALARALA 161 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHH-----HHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHHHT
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CChhHhcCCcccCCHHHHHHHHHHHHHH
Confidence 999999999886 599999998632 112222111 112223333 5555566677899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcCCCchH
Q 001041 539 KDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615 (1178)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 615 (1178)
.+|++||||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+|++.|+++++..++...|
T Consensus 162 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~ 241 (355)
T 1z47_A 162 PRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLF 241 (355)
T ss_dssp TCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSSHH
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccchH
Confidence 99999999999999999999999999988753 7899999999998754 99999999999999999999987755444
No 45
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=3.1e-42 Score=373.31 Aligned_cols=213 Identities=32% Similarity=0.481 Sum_probs=180.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
|+++|++++|+. +|+|+||++++ |+++|+||||||||||+++|+|+++|++|+|.++|.++.+.. ..|++|+
T Consensus 2 l~~~~l~~~y~~-----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~ 73 (240)
T 2onk_A 2 FLKVRAEKRLGN-----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIG 73 (240)
T ss_dssp CEEEEEEEEETT-----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCB
T ss_pred EEEEEEEEEeCC-----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEE
Confidence 689999999952 59999999999 999999999999999999999999999999999999987643 2467899
Q ss_pred EEcCCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCC
Q 001041 464 LVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1178)
Q Consensus 464 ~v~Q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~ 542 (1178)
||||+|.+|.. |++||+.++........- ...+.+.++.+ |++........+||||||||++||||++++|+
T Consensus 74 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 146 (240)
T 2onk_A 74 FVPQDYALFPHLSVYRNIAYGLRNVERVER-----DRRVREMAEKL--GIAHLLDRKPARLSGGERQRVALARALVIQPR 146 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHH-----HHHHHHHHHTT--TCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred EEcCCCccCCCCcHHHHHHHHHHHcCCchH-----HHHHHHHHHHc--CCHHHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 99999998865 999999987543221111 11122334444 55555666778999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcCC
Q 001041 543 ILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDP 611 (1178)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 611 (1178)
+|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+.+
T Consensus 147 lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 218 (240)
T 2onk_A 147 LLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp SBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 9999999999999999999999988743 799999999999875 59999999999999999999987653
No 46
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=2.7e-42 Score=391.45 Aligned_cols=215 Identities=30% Similarity=0.517 Sum_probs=184.2
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
|+++|++++|+ +. +|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+.. |++|+
T Consensus 2 l~~~~l~~~y~---~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 75 (348)
T 3d31_A 2 IEIESLSRKWK---NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIA 75 (348)
T ss_dssp EEEEEEEEECS---SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCE
T ss_pred EEEEEEEEEEC---CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchh--hCcEE
Confidence 78999999995 24 99999999999999999999999999999999999999999999999999876553 56899
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 464 LVSQEPVLFT-GSIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 464 ~v~Q~~~l~~-~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
||+|++.+|. .||+||+.|+.. ...++++.++++.. |++........+||||||||++|||||+.
T Consensus 76 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~-----------~L~~~~~~~~~~LSgGq~QRvalAraL~~ 144 (348)
T 3d31_A 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL-----------KIEHLLDRNPLTLSGGEQQRVALARALVT 144 (348)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHT-----------TCTTTTTSCGGGSCHHHHHHHHHHHHTTS
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHc-----------CCchHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 9999999986 499999998631 11123344444333 44444566677899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcCCCchH
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 615 (1178)
+|++||||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|++++.|+++++.+++...|
T Consensus 145 ~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~ 223 (348)
T 3d31_A 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223 (348)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcccHH
Confidence 9999999999999999999999999988753 789999999999875 599999999999999999999988755444
No 47
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=2.2e-42 Score=394.00 Aligned_cols=224 Identities=29% Similarity=0.448 Sum_probs=186.1
Q ss_pred cEEEEeEEEECCCCCCCc--cccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCC---HHH
Q 001041 383 DIELRDVYFSYPARPNEQ--IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ---LQW 457 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~--~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~---~~~ 457 (1178)
.|+++|++++|++ .+ +|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ ...
T Consensus 3 ~l~i~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~ 79 (353)
T 1oxx_K 3 RIIVKNVSKVFKK---GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP 79 (353)
T ss_dssp CEEEEEEEEEEGG---GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCG
T ss_pred EEEEEeEEEEECC---EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCCh
Confidence 3899999999953 45 999999999999999999999999999999999999999999999999986521 223
Q ss_pred HhcceEEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHH
Q 001041 458 IRKKIGLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1178)
Q Consensus 458 ~r~~i~~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lA 534 (1178)
.+++|+||+|++.+|. .||+|||.|+... ...++..+ .+.+.++.+ |++........+||||||||++||
T Consensus 80 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~-----~v~~~l~~~--~L~~~~~~~~~~LSGGq~QRvalA 152 (353)
T 1oxx_K 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRK-----RVEEVAKIL--DIHHVLNHFPRELSGAQQQRVALA 152 (353)
T ss_dssp GGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHH-----HHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred hhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchHhcCChhhCCHHHHHHHHHH
Confidence 4678999999999986 5999999997532 12222211 112223333 555556667789999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcCC
Q 001041 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDP 611 (1178)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 611 (1178)
|||+.+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|++.|+++++..++
T Consensus 153 raL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p 232 (353)
T 1oxx_K 153 RALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNP 232 (353)
T ss_dssp HHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999999999999988753 789999999999875 49999999999999999999998875
Q ss_pred CchHH
Q 001041 612 EGAYS 616 (1178)
Q Consensus 612 ~~~~~ 616 (1178)
...|.
T Consensus 233 ~~~~~ 237 (353)
T 1oxx_K 233 VSIQV 237 (353)
T ss_dssp SSHHH
T ss_pred ccHHH
Confidence 54443
No 48
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=5.8e-42 Score=372.93 Aligned_cols=208 Identities=23% Similarity=0.352 Sum_probs=182.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++++ ++|+|+||++++||+++|+||||||||||+++|+|+++|+ |+|.++|.++...+...+|+++
T Consensus 4 ~l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i 75 (249)
T 2qi9_C 4 VMQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHR 75 (249)
T ss_dssp EEEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHE
T ss_pred EEEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceE
Confidence 3889999985 4899999999999999999999999999999999999999 9999999999888888888999
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCC-CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccC
Q 001041 463 GLVSQEPVLFT-GSIKDNIAYGKDD-ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1178)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~ni~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~ 540 (1178)
+|+||+|.+|. .|++||+.++... .+.+++.++++.. |++........+||||||||++||||++++
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGq~qrv~lAraL~~~ 144 (249)
T 2qi9_C 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL-----------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQI 144 (249)
T ss_dssp EEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHT-----------TCGGGTTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHc-----------CChhHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 99999998875 5999999987421 2244444444443 444455667789999999999999999999
Q ss_pred CC-------EEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhc
Q 001041 541 PR-------ILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVE 609 (1178)
Q Consensus 541 ~~-------illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1178)
|+ +|||||||++||+.+.+.+.+.++++. +++|+|++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 145 p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 145 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp CTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99 999999999999999999999998874 4789999999999984 699999999999999999999864
No 49
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=4.7e-42 Score=393.61 Aligned_cols=222 Identities=27% Similarity=0.487 Sum_probs=185.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCC------CCHH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE------FQLQ 456 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~------~~~~ 456 (1178)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+ .+..
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~ 79 (372)
T 1g29_1 3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (372)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHh
Confidence 4899999999953 469999999999999999999999999999999999999999999999999865 4443
Q ss_pred HHhcceEEEcCCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHH
Q 001041 457 WIRKKIGLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1178)
Q Consensus 457 ~~r~~i~~v~Q~~~l~~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~l 533 (1178)
+++|+||+|++.+|. .||+|||.|+.. ....++..+. +.+.++.+ |++........+||||||||++|
T Consensus 80 --~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~-----v~~~l~~~--~L~~~~~r~~~~LSGGq~QRval 150 (372)
T 1g29_1 80 --DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR-----VREVAELL--GLTELLNRKPRELSGGQRQRVAL 150 (372)
T ss_dssp --GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHH-----HHHHHHHH--TCGGGTTCCGGGSCHHHHHHHHH
T ss_pred --HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHC--CCchHhcCCcccCCHHHHHHHHH
Confidence 568999999999885 699999998632 1222222111 11222222 55555666778999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcC
Q 001041 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
||||+.+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|++.|+++++..+
T Consensus 151 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 230 (372)
T 1g29_1 151 GRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230 (372)
T ss_dssp HHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999988753 789999999999875 5999999999999999999999887
Q ss_pred CCchHH
Q 001041 611 PEGAYS 616 (1178)
Q Consensus 611 ~~~~~~ 616 (1178)
+...|.
T Consensus 231 p~~~~~ 236 (372)
T 1g29_1 231 PANTFV 236 (372)
T ss_dssp CSBHHH
T ss_pred cccHHH
Confidence 655443
No 50
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=2.3e-42 Score=421.56 Aligned_cols=193 Identities=21% Similarity=0.341 Sum_probs=152.1
Q ss_pred EeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcE---------EECCeecCCCCHHH
Q 001041 387 RDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV---------LIDGINLKEFQLQW 457 (1178)
Q Consensus 387 ~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i---------~i~g~~~~~~~~~~ 457 (1178)
+|++++|+.. ..+|+|+| ++++||+++|+||||||||||+++|.|+++|++|++ .++|.++.+.....
T Consensus 95 ~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~ 171 (607)
T 3bk7_A 95 EDCVHRYGVN--AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERL 171 (607)
T ss_dssp GSEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHH
T ss_pred CCeEEEECCC--CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhh
Confidence 8999999642 25899999 999999999999999999999999999999999996 34565443221111
Q ss_pred --HhcceEEEcCCC----CCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHH
Q 001041 458 --IRKKIGLVSQEP----VLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1178)
Q Consensus 458 --~r~~i~~v~Q~~----~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri 531 (1178)
.+..+++++|.. .++.+|++||+..... .+++.++++.. |++........+||||||||+
T Consensus 172 ~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~---~~~~~~~L~~l-----------gL~~~~~~~~~~LSGGekQRv 237 (607)
T 3bk7_A 172 KNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDE---VGKFEEVVKEL-----------ELENVLDRELHQLSGGELQRV 237 (607)
T ss_dssp HHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCC---SSCHHHHHHHT-----------TCTTGGGSBGGGCCHHHHHHH
T ss_pred hhhhcceEEeechhhhchhhccccHHHHhhhhHH---HHHHHHHHHHc-----------CCCchhCCChhhCCHHHHHHH
Confidence 134588998874 3445699999975221 22333333333 444445555678999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCC
Q 001041 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRG 596 (1178)
Q Consensus 532 ~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G 596 (1178)
+|||||+++|++||||||||+||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|+++
T Consensus 238 aIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 238 AIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp HHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 99999999999999999999999999999999998875 37899999999998865 9999999753
No 51
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=9.2e-42 Score=373.39 Aligned_cols=214 Identities=27% Similarity=0.429 Sum_probs=171.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcc--CCCCCCcEEECCeecCCCCHHHH-h
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF--YDPQAGEVLIDGINLKEFQLQWI-R 459 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~--~~~~~G~i~i~g~~~~~~~~~~~-r 459 (1178)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++.+.+.... |
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~ 79 (250)
T 2d2e_A 3 QLEIRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERAR 79 (250)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHh
Confidence 3889999999963 4699999999999999999999999999999999998 88999999999999988877654 4
Q ss_pred cceEEEcCCCCCCc-ccHHHHHhcCCC---C--CCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCC-CChHHHHHH
Q 001041 460 KKIGLVSQEPVLFT-GSIKDNIAYGKD---D--ATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQ-LSGGQKQRI 531 (1178)
Q Consensus 460 ~~i~~v~Q~~~l~~-~ti~~ni~~~~~---~--~~~~~~~~~~~~~~~~~~i~~~~~g~~-t~~~~~g~~-lSgGqkqri 531 (1178)
..++|++|+|.+|. .|++||+.++.. . ...++..+ .+.+.++.+ |++ ........+ ||||||||+
T Consensus 80 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~~~LSgGqkQrv 152 (250)
T 2d2e_A 80 KGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWT-----KVKKALELL--DWDESYLSRYLNEGFSGGEKKRN 152 (250)
T ss_dssp TTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHH-----HHHHHHHHH--TCCGGGGGSBTTCC----HHHHH
T ss_pred CcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHH-----HHHHHHHHc--CCChhHhcCCcccCCCHHHHHHH
Confidence 56999999999886 499999987421 0 11111111 111222222 443 233444456 999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc--cCEEEEEeCCEEEEecChhH
Q 001041 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN--ADMIAVIHRGKIVEKGTHSK 606 (1178)
Q Consensus 532 ~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~--~d~i~~l~~G~i~~~g~~~~ 606 (1178)
+|||||+++|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++.
T Consensus 153 ~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 153 EILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp HHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred HHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHHH
Confidence 99999999999999999999999999999999998875 47899999999999875 59999999999999999873
No 52
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=5.1e-42 Score=414.94 Aligned_cols=195 Identities=22% Similarity=0.354 Sum_probs=150.2
Q ss_pred EE-EeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcE---------EECCeecCCCC
Q 001041 385 EL-RDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV---------LIDGINLKEFQ 454 (1178)
Q Consensus 385 ~~-~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i---------~i~g~~~~~~~ 454 (1178)
++ +|++++|++. ..+|+|+| +|++||+++|+||||||||||+++|.|+++|++|++ .++|.++....
T Consensus 22 ~~~~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~ 98 (538)
T 1yqt_A 22 QLEEDCVHRYGVN--AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYF 98 (538)
T ss_dssp --CCCEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHH
T ss_pred hHhcCcEEEECCc--cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHH
Confidence 44 5899999642 25899999 999999999999999999999999999999999995 35565443211
Q ss_pred HHH--HhcceEEEcCCCCC----CcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 001041 455 LQW--IRKKIGLVSQEPVL----FTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1178)
Q Consensus 455 ~~~--~r~~i~~v~Q~~~l----~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqk 528 (1178)
... .+..+++++|+... +.+|+++|+..... .+++.++++.. |++........+||||||
T Consensus 99 ~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~---~~~~~~~l~~l-----------gl~~~~~~~~~~LSgGek 164 (538)
T 1yqt_A 99 EKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADE---TGKLEEVVKAL-----------ELENVLEREIQHLSGGEL 164 (538)
T ss_dssp HHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCS---SSCHHHHHHHT-----------TCTTTTTSBGGGCCHHHH
T ss_pred HHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhhH---HHHHHHHHHHc-----------CCChhhhCChhhCCHHHH
Confidence 111 12468899987543 34699999864211 12233333333 344344555678999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCC
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRG 596 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G 596 (1178)
||++|||||+.+|++||||||||+||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|
T Consensus 165 QRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 165 QRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 99999999999999999999999999999999999998764 47899999999999875 9999999753
No 53
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.6e-41 Score=372.11 Aligned_cols=207 Identities=17% Similarity=0.313 Sum_probs=177.8
Q ss_pred EEEEeEEEECCCC-CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 384 IELRDVYFSYPAR-PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 384 i~~~~~~~~y~~~-~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
++++|++++|++. ..+++|+|+||+++ ||+++|+||||||||||+++|+|++ |++|+|.++|.++.+. .. |+++
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999631 01469999999999 9999999999999999999999999 9999999999998654 23 6789
Q ss_pred E-EEcCCCCCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHHHHHHHHHHhc
Q 001041 463 G-LVSQEPVLFTGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRIAIARAIL 538 (1178)
Q Consensus 463 ~-~v~Q~~~l~~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~-t~~~~~g~~lSgGqkqri~lARal~ 538 (1178)
+ |+||+|.+ ..|++||+.++.+ ...++++.+++ +.+ |++ ...+....+||||||||++|||||+
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l---------~~~--gl~~~~~~~~~~~LSgGqkqRv~lAraL~ 144 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEML---------KAL--KLGEEILRRKLYKLSAGQSVLVRTSLALA 144 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHH---------HHT--TCCGGGGGSBGGGSCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHH---------HHc--CCChhHhcCChhhCCHHHHHHHHHHHHHH
Confidence 9 99999998 9999999987532 22334443333 333 555 6667778899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhh-ccC-EEEEEeCCEEEEecChhHHhc
Q 001041 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NAD-MIAVIHRGKIVEKGTHSKLVE 609 (1178)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d-~i~~l~~G~i~~~g~~~~l~~ 609 (1178)
++|++|||||||++||+.+.+.+.+.++++.+ |+|++||+++.+. .|| +|++|++|++++.|+++++.+
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 145 SQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred hCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999999999999988654 9999999999875 599 999999999999999998864
No 54
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1.1e-40 Score=367.95 Aligned_cols=216 Identities=25% Similarity=0.360 Sum_probs=177.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcc--CCCCCCcEEECCeecCCCCHHHH-h
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF--YDPQAGEVLIDGINLKEFQLQWI-R 459 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~--~~~~~G~i~i~g~~~~~~~~~~~-r 459 (1178)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++...+.... +
T Consensus 20 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 20 MLSIKDLHVSVED---KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 5999999999953 4699999999999999999999999999999999999 57899999999999988776655 4
Q ss_pred cceEEEcCCCCCCcc-cHHHHHhcCC---------CCCCHHHHHHHHHHhcHHHHHHhCCCCccchh-cCCCC-CCChHH
Q 001041 460 KKIGLVSQEPVLFTG-SIKDNIAYGK---------DDATTEEIRVATELANAAKFIDKLPQGIDTLV-GEHGT-QLSGGQ 527 (1178)
Q Consensus 460 ~~i~~v~Q~~~l~~~-ti~~ni~~~~---------~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~-~~~g~-~lSgGq 527 (1178)
..|+|++|+|.+|.. |+++|+.++. +..+.++..+ .+.+.++.+ |+++.. ..... +|||||
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~~~LSgGq 169 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQD-----LMEEKIALL--KMPEDLLTRSVNVGFSGGE 169 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHH-----HHHHHHHHT--TCCTTTTTSBTTTTCCHHH
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHH-----HHHHHHHHc--CCChhHhcCCcccCCCHHH
Confidence 569999999988854 8999987532 1112222111 122334443 554433 33333 599999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc--cCEEEEEeCCEEEEecCh
Q 001041 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN--ADMIAVIHRGKIVEKGTH 604 (1178)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~--~d~i~~l~~G~i~~~g~~ 604 (1178)
|||++|||||+++|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|++
T Consensus 170 ~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~ 249 (267)
T 2zu0_C 170 KKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF 249 (267)
T ss_dssp HHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECT
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCH
Confidence 999999999999999999999999999999999999998874 47899999999999875 899999999999999998
Q ss_pred hHHh
Q 001041 605 SKLV 608 (1178)
Q Consensus 605 ~~l~ 608 (1178)
+++.
T Consensus 250 ~~~~ 253 (267)
T 2zu0_C 250 TLVK 253 (267)
T ss_dssp THHH
T ss_pred HHHh
Confidence 8763
No 55
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=6.9e-41 Score=366.12 Aligned_cols=203 Identities=29% Similarity=0.440 Sum_probs=170.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.|+++|++++|+. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+ +++|
T Consensus 4 ~l~i~~l~~~y~~--~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~-------------~~~i 68 (253)
T 2nq2_C 4 ALSVENLGFYYQA--ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV-------------YQSI 68 (253)
T ss_dssp EEEEEEEEEEETT--TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE-------------CSCE
T ss_pred eEEEeeEEEEeCC--CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-------------eccE
Confidence 4899999999962 246999999999999999999999999999999999999999999982 4589
Q ss_pred EEEcCCCCCC-cccHHHHHhcCCCC-------CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHH
Q 001041 463 GLVSQEPVLF-TGSIKDNIAYGKDD-------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1178)
Q Consensus 463 ~~v~Q~~~l~-~~ti~~ni~~~~~~-------~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lA 534 (1178)
+||||+|.+| ..|++||+.++... ...+...+ +.+.++.+ |++........+||||||||++||
T Consensus 69 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA 140 (253)
T 2nq2_C 69 GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQV------AMQALDYL--NLTHLAKREFTSLSGGQRQLILIA 140 (253)
T ss_dssp EEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHH------HHHHHHHT--TCGGGTTSBGGGSCHHHHHHHHHH
T ss_pred EEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHH------HHHHHHHc--CChHHhcCChhhCCHHHHHHHHHH
Confidence 9999999887 67999999986421 12211111 11223333 555556667789999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhc
Q 001041 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVE 609 (1178)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1178)
|||+++|++||||||||+||+.+.+.+.+.++++.+ ++|+|++||+++.+. .||+|++|++|+ ++.|+++++..
T Consensus 141 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 141 RAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILT 217 (253)
T ss_dssp HHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCC
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhC
Confidence 999999999999999999999999999999988754 789999999999985 599999999999 99999999864
No 56
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1.2e-40 Score=417.04 Aligned_cols=202 Identities=25% Similarity=0.393 Sum_probs=134.9
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHH---------------------HHHhccCCCC-------CCcEEECCeec
Q 001041 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVI---------------------SLIERFYDPQ-------AGEVLIDGINL 450 (1178)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~---------------------~~l~g~~~~~-------~G~i~i~g~~~ 450 (1178)
..+|+|+||+|++||+++|+||||||||||+ +.+.|+..|. .|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4589999999999999999999999999998 8888888887 45566666544
Q ss_pred CCCCHHHHhcceEEEcCCCCC--------------------CcccHHHHHhcCCCC-CCH--HH-----HHHHHHHhcHH
Q 001041 451 KEFQLQWIRKKIGLVSQEPVL--------------------FTGSIKDNIAYGKDD-ATT--EE-----IRVATELANAA 502 (1178)
Q Consensus 451 ~~~~~~~~r~~i~~v~Q~~~l--------------------~~~ti~~ni~~~~~~-~~~--~~-----~~~~~~~~~~~ 502 (1178)
.. ..+..+++|+|.+.+ ...|++||+.+.... ... .+ ..++.+..
T Consensus 111 ~~----~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 183 (670)
T 3ux8_A 111 SR----NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL--- 183 (670)
T ss_dssp --------CCBHHHHTTCC-------------------------CC--------------------------CHHHH---
T ss_pred hc----cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHH---
Confidence 32 224456677665533 245899999874211 011 11 11111111
Q ss_pred HHHHhCCCCccch-hcCCCCCCChHHHHHHHHHHHhccCCC--EEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEe
Q 001041 503 KFIDKLPQGIDTL-VGEHGTQLSGGQKQRIAIARAILKDPR--ILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVA 578 (1178)
Q Consensus 503 ~~i~~~~~g~~t~-~~~~g~~lSgGqkqri~lARal~~~~~--illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~it 578 (1178)
+.++.+ |++.. ......+||||||||++|||||+.+|+ +||||||||+||+.+...+.+.|+++. ++.|+|+||
T Consensus 184 ~~l~~~--gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vt 261 (670)
T 3ux8_A 184 GFLQNV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVE 261 (670)
T ss_dssp HHHHHT--TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHc--CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 123333 44332 345567899999999999999999988 999999999999999999999998764 478999999
Q ss_pred cCcchhhccCEEEEE------eCCEEEEecChhHHhc
Q 001041 579 HRLSTVRNADMIAVI------HRGKIVEKGTHSKLVE 609 (1178)
Q Consensus 579 H~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~ 609 (1178)
|+++.+..||+|++| ++|++++.|+++++.+
T Consensus 262 Hd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~ 298 (670)
T 3ux8_A 262 HDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMN 298 (670)
T ss_dssp CCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHT
T ss_pred CCHHHHhhCCEEEEecccccccCCEEEEecCHHHHhc
Confidence 999998889999999 8999999998877653
No 57
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.1e-40 Score=401.58 Aligned_cols=191 Identities=21% Similarity=0.388 Sum_probs=146.0
Q ss_pred eEEEECCCCCCCccccceeEEE-eCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcE-----------EECCeecCCCCH
Q 001041 388 DVYFSYPARPNEQIFSGFSISI-SSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV-----------LIDGINLKEFQL 455 (1178)
Q Consensus 388 ~~~~~y~~~~~~~~l~~i~l~i-~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i-----------~i~g~~~~~~~~ 455 (1178)
++.++|+.. -++...|.+ ++||++||+||||||||||+++|+|+++|++|+| .++|.++..+..
T Consensus 4 ~~~~~~~~~----~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~ 79 (538)
T 3ozx_A 4 EVIHRYKVN----GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFK 79 (538)
T ss_dssp CEEEESSTT----SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHH
T ss_pred CCceecCCC----ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHH
Confidence 567899632 244444544 4899999999999999999999999999999998 566765533211
Q ss_pred HHH------hcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHH
Q 001041 456 QWI------RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1178)
Q Consensus 456 ~~~------r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkq 529 (1178)
... ...+.|++|.|.++.+++++++..... .++..++++.. |++........+|||||||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~---~~~~~~~l~~l-----------~l~~~~~~~~~~LSgGe~Q 145 (538)
T 3ozx_A 80 ELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDE---RGKKDEVKELL-----------NMTNLWNKDANILSGGGLQ 145 (538)
T ss_dssp HHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHCC---SSCHHHHHHHT-----------TCGGGTTSBGGGCCHHHHH
T ss_pred HHhhcccchhhccchhhhhhhhccCcHHHHhhcchh---HHHHHHHHHHc-----------CCchhhcCChhhCCHHHHH
Confidence 111 123455666677788899998763221 12333444443 3333344555689999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCC
Q 001041 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRG 596 (1178)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G 596 (1178)
|++|||||+.+|+|||||||||+||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|
T Consensus 146 rv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~ 213 (538)
T 3ozx_A 146 RLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGE 213 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCC
Confidence 999999999999999999999999999999999999988778999999999998865 9999999764
No 58
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=1.8e-40 Score=352.34 Aligned_cols=195 Identities=22% Similarity=0.387 Sum_probs=163.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++++|+ + ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..|++|
T Consensus 10 ~l~~~~ls~~y~---~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i 80 (214)
T 1sgw_A 10 KLEIRDLSVGYD---K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI 80 (214)
T ss_dssp EEEEEEEEEESS---S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred eEEEEEEEEEeC---C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcE
Confidence 599999999995 3 6999999999999999999999999999999999999999999999999886 257889
Q ss_pred EEEcCCCCCCcc-cHHHHHhcCCC----CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHh
Q 001041 463 GLVSQEPVLFTG-SIKDNIAYGKD----DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1178)
Q Consensus 463 ~~v~Q~~~l~~~-ti~~ni~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal 537 (1178)
+||||+|.+|.. |++||+.++.. ....+++.+++ +.+ |++.. ++...+||||||||++||||+
T Consensus 81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l---------~~~--gl~~~-~~~~~~LSgGqkqrv~laraL 148 (214)
T 1sgw_A 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDAL---------ESV--EVLDL-KKKLGELSQGTIRRVQLASTL 148 (214)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHH---------HHT--TCCCT-TSBGGGSCHHHHHHHHHHHHT
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHH---------HHc--CCCcC-CCChhhCCHHHHHHHHHHHHH
Confidence 999999998875 99999987521 11233333333 333 55555 677789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEE
Q 001041 538 LKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIV 599 (1178)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~ 599 (1178)
+++|++|||||||++||+.+...+.+.++++. +++|+|++||+++.+.. ||+|+ +.+|+|-
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~-~~~~~~~ 211 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLH-KYSTKID 211 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGG-GGBC---
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE-EeCCccc
Confidence 99999999999999999999999999998765 47899999999999876 66655 5567663
No 59
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-38 Score=383.07 Aligned_cols=195 Identities=20% Similarity=0.356 Sum_probs=144.6
Q ss_pred eEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcE-----------EECCeecCCCCHH
Q 001041 388 DVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV-----------LIDGINLKEFQLQ 456 (1178)
Q Consensus 388 ~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i-----------~i~g~~~~~~~~~ 456 (1178)
|++++|+. ....|++++ .+++||+++|+||||||||||+++|.|+++|++|+| .++|.++..+...
T Consensus 82 ~~~~~Y~~--~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~ 158 (608)
T 3j16_B 82 HVTHRYSA--NSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTK 158 (608)
T ss_dssp TEEEECST--TSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHH
T ss_pred CeEEEECC--CceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhH
Confidence 57899964 335778877 589999999999999999999999999999999998 2334333222222
Q ss_pred HHhcce--EEEcCCCC----CCc---ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH
Q 001041 457 WIRKKI--GLVSQEPV----LFT---GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1178)
Q Consensus 457 ~~r~~i--~~v~Q~~~----l~~---~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGq 527 (1178)
.++..+ .+.+|... .+. .++.+++.... ....+++.++++.. |++........+|||||
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~-~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LSgGe 226 (608)
T 3j16_B 159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM-EKSPEDVKRYIKIL-----------QLENVLKRDIEKLSGGE 226 (608)
T ss_dssp HHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHC-CSCHHHHHHHHHHH-----------TCTGGGGSCTTTCCHHH
T ss_pred HHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhh-hhHHHHHHHHHHHc-----------CCcchhCCChHHCCHHH
Confidence 223333 23333221 111 25666665432 22344555444443 44555566778999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc-CCeEEEEecCcchhhc-cCEEEEEeCCE
Q 001041 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGK 597 (1178)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~ 597 (1178)
|||++|||||+++|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|.
T Consensus 227 ~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~ 298 (608)
T 3j16_B 227 LQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVP 298 (608)
T ss_dssp HHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCT
T ss_pred HHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 9999999999999999999999999999999999999988754 7899999999999875 99999998653
No 60
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=1.9e-34 Score=321.72 Aligned_cols=171 Identities=33% Similarity=0.556 Sum_probs=147.8
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCC
Q 001041 1003 SSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGS 1082 (1178)
Q Consensus 1003 ~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGS 1082 (1178)
+..++.+.++++|++++++.+++...... ....+...|.|+|+||+|+|++ +.+||+||||+|++||++||||||||
T Consensus 15 ~~~~~~~~~~~~ri~~~l~~~~~~~~~~~-~~~~~~~~~~i~~~~vs~~y~~--~~~vL~~isl~i~~Ge~vaivG~sGs 91 (306)
T 3nh6_A 15 VPRGSHMFIDMENMFDLLKEETEVKDLPG-AGPLRFQKGRIEFENVHFSYAD--GRETLQDVSFTVMPGQTLALVGPSGA 91 (306)
T ss_dssp ----CCTTCCHHHHHHHHHHHHSCCCCTT-CBCCCCSSCCEEEEEEEEESST--TCEEEEEEEEEECTTCEEEEESSSCH
T ss_pred chhHHHHHHHHHHHHHHHhCCcccccccc-ccccCCCCCeEEEEEEEEEcCC--CCceeeeeeEEEcCCCEEEEECCCCc
Confidence 34567778889999999987655432211 1122234678999999999973 34699999999999999999999999
Q ss_pred CHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCch
Q 001041 1083 GKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAH 1162 (1178)
Q Consensus 1083 GKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~ 1162 (1178)
|||||+++|+|+|+|++|+|+|||+|+++++..++|++|++|||||.||++||+|||.||.. .++++++++|++.++++
T Consensus 92 GKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~-~~~~~~~~~~~~~~~l~ 170 (306)
T 3nh6_A 92 GKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRV-TAGNDEVEAAAQAAGIH 170 (306)
T ss_dssp HHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTST-TCCHHHHHHHHHHHTCH
T ss_pred hHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcc-cCCHHHHHHHHHHhCcH
Confidence 99999999999999999999999999999999999999999999999999999999999954 68899999999999999
Q ss_pred HHHhhcccccccccc
Q 001041 1163 KFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1163 dfI~~LP~gldT~v~ 1177 (1178)
+++..+|+||||.++
T Consensus 171 ~~i~~lp~gl~t~~~ 185 (306)
T 3nh6_A 171 DAIMAFPEGYRTQVG 185 (306)
T ss_dssp HHHHHSTTGGGCEES
T ss_pred HHHHhccchhhhHhc
Confidence 999999999999874
No 61
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.98 E-value=2.1e-32 Score=333.79 Aligned_cols=199 Identities=25% Similarity=0.353 Sum_probs=165.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++++|++ ..|+++||++++||+++|+||||||||||+++|.|+++|++|+|.++ .+|
T Consensus 357 ~l~~~~l~~~~~~----~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~-------------~~i 419 (607)
T 3bk7_A 357 LVEYPRLVKDYGS----FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-------------LTV 419 (607)
T ss_dssp EEEECCEEEECSS----CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC-------------CCE
T ss_pred EEEEeceEEEecc----eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe-------------eEE
Confidence 5899999999952 36899999999999999999999999999999999999999999762 379
Q ss_pred EEEcCCCCC-CcccHHHHHhcC-CCCC-CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 463 GLVSQEPVL-FTGSIKDNIAYG-KDDA-TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 463 ~~v~Q~~~l-~~~ti~~ni~~~-~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
+|+||++.. +..|++||+.+. .+.. ..+.+. +.++.+ |+.........+||||||||++|||||++
T Consensus 420 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~---------~~l~~~--~l~~~~~~~~~~LSGGe~QRv~iAraL~~ 488 (607)
T 3bk7_A 420 AYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKT---------ELLKPL--GIIDLYDRNVEDLSGGELQRVAIAATLLR 488 (607)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHH---------HTHHHH--TCTTTTTSBGGGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCccCCCCCcHHHHHHhhhccCCCHHHHHH---------HHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHHh
Confidence 999999865 578999998753 1100 111122 222222 44444556667899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhhc-cCEEEEEeC--CEEEEecChhHHhc
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHR--GKIVEKGTHSKLVE 609 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~--G~i~~~g~~~~l~~ 609 (1178)
+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||+|++|++ |++...|+++++..
T Consensus 489 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 489 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 999999999999999999999999998874 47899999999999875 999999986 88888999988764
No 62
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.98 E-value=1.7e-32 Score=331.72 Aligned_cols=199 Identities=24% Similarity=0.356 Sum_probs=165.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|+++.|++ ..|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++ .+|
T Consensus 287 ~l~~~~l~~~~~~----~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~-------------~~i 349 (538)
T 1yqt_A 287 LVTYPRLVKDYGS----FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD-------------LTV 349 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC-------------CCE
T ss_pred EEEEeeEEEEECC----EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-------------ceE
Confidence 5899999999952 36899999999999999999999999999999999999999999862 369
Q ss_pred EEEcCCCCC-CcccHHHHHhcC-CCC-CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 463 GLVSQEPVL-FTGSIKDNIAYG-KDD-ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 463 ~~v~Q~~~l-~~~ti~~ni~~~-~~~-~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
+|+||++.. +..||.+|+... .+. ...+. +.+.++.+ |+.........+||||||||++|||||+.
T Consensus 350 ~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~---------~~~~l~~~--~l~~~~~~~~~~LSGGe~qrv~lAraL~~ 418 (538)
T 1yqt_A 350 AYKPQYIKADYEGTVYELLSKIDASKLNSNFY---------KTELLKPL--GIIDLYDREVNELSGGELQRVAIAATLLR 418 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHTCHHH---------HHHTTTTT--TCGGGTTSBGGGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCCcCCCCCcHHHHHHhhhccCCCHHHH---------HHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHHh
Confidence 999999965 578999988642 110 01111 12233333 55555666778899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhhc-cCEEEEEeC--CEEEEecChhHHhc
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHR--GKIVEKGTHSKLVE 609 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~--G~i~~~g~~~~l~~ 609 (1178)
+|++|||||||++||+.+...+.+.|+++. .+.|+|+|||+++.+.. ||+|++|++ |+++..|+++++..
T Consensus 419 ~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 419 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 999999999999999999999999998874 38999999999999875 999999986 78888999988754
No 63
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=6.5e-32 Score=325.36 Aligned_cols=200 Identities=21% Similarity=0.285 Sum_probs=165.0
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcc
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1178)
..++++|+++.|++ ..|++.||++++||+++|+||||||||||+++|+|+++|++|+|.++|. .
T Consensus 268 ~~l~~~~l~~~~~~----~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~ 331 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD----FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ------------I 331 (538)
T ss_dssp EEEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC------------C
T ss_pred ceEEEcceEEEECC----EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe------------e
Confidence 35889999999953 4688889999999999999999999999999999999999999998763 6
Q ss_pred eEEEcCCCCC-CcccHHHHHhcCCCCC---CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHh
Q 001041 462 IGLVSQEPVL-FTGSIKDNIAYGKDDA---TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1178)
Q Consensus 462 i~~v~Q~~~l-~~~ti~~ni~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal 537 (1178)
++|+||++.. +..||++|+.+..... ..+...++ ++.+ |+.........+||||||||++|||||
T Consensus 332 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~---------l~~~--~l~~~~~~~~~~LSGGq~QRv~iAraL 400 (538)
T 3ozx_A 332 LSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEV---------TKRL--NLHRLLESNVNDLSGGELQKLYIAATL 400 (538)
T ss_dssp EEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHT---------TTTT--TGGGCTTSBGGGCCHHHHHHHHHHHHH
T ss_pred eEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHH---------HHHc--CCHHHhcCChhhCCHHHHHHHHHHHHH
Confidence 9999999864 5789999998643221 11222222 2222 555556667788999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhhc-cCEEEEEeC--CEEEEecChhHHh
Q 001041 538 LKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHR--GKIVEKGTHSKLV 608 (1178)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~--G~i~~~g~~~~l~ 608 (1178)
+++|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||||++|++ |.+...+++.++.
T Consensus 401 ~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 401 AKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp HSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 99999999999999999999999999998875 37899999999999875 999999986 5666677776654
No 64
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.97 E-value=1.5e-35 Score=329.04 Aligned_cols=217 Identities=19% Similarity=0.267 Sum_probs=174.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCE
Q 001041 335 MSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTT 414 (1178)
Q Consensus 335 ~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~ 414 (1178)
.++..+...+..+..+..+..|+.+.++.+++..... .. ..+..+.|+++||+|+|+ .++|+++||+|++|++
T Consensus 56 ~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~--~~-~~~~~~~i~~~~vs~~y~----~~vL~~vsl~i~~Ge~ 128 (305)
T 2v9p_A 56 KHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGE--GS-WKSILTFFNYQNIELITF----INALKLWLKGIPKKNC 128 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSS--CC-THHHHHHHHHTTCCHHHH----HHHHHHHHHTCTTCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC--Cc-ccccCCeEEEEEEEEEcC----hhhhccceEEecCCCE
Confidence 4556666677788889999999999987644321111 11 011234589999999995 3699999999999999
Q ss_pred EEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHH-HHhcCCCCCCHHHHH
Q 001041 415 AALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKD-NIAYGKDDATTEEIR 493 (1178)
Q Consensus 415 ~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~-ni~~~~~~~~~~~~~ 493 (1178)
++|+||||||||||+++|+|++ +|+| ++|++|+|++|.+|+++ ||.++ ++.++
T Consensus 129 vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~~ti~~~ni~~~-~~~~~---- 182 (305)
T 2v9p_A 129 LAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWLASLADTRAALV-DDATH---- 182 (305)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGGGGGTTCSCEEE-EEECH----
T ss_pred EEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCccccccccHHHHhhccC-ccccH----
Confidence 9999999999999999999999 7888 56889999999999998 99986 33333
Q ss_pred HHHHHhcHHHHHHh-CCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCC
Q 001041 494 VATELANAAKFIDK-LPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNR 572 (1178)
Q Consensus 494 ~~~~~~~~~~~i~~-~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~ 572 (1178)
+++++++. +|+|++ |.+|||||||| |||++++|+||| ||+||+++++.+..
T Consensus 183 ------~~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~--------- 234 (305)
T 2v9p_A 183 ------ACWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY--------- 234 (305)
T ss_dssp ------HHHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG---------
T ss_pred ------HHHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH---------
Confidence 23456777 899988 67999999999 999999999999 99999999887752
Q ss_pred eEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHH
Q 001041 573 TTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRL 621 (1178)
Q Consensus 573 t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 621 (1178)
+|||++.+..||+| +|++|+|++.|+++++ ++.|.+++..
T Consensus 235 ----ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el----~~~y~~l~~~ 274 (305)
T 2v9p_A 235 ----LHSRVQTFRFEQPC-TDESGEQPFNITDADW----KSFFVRLWGR 274 (305)
T ss_dssp ----GTTTEEEEECCCCC-CCC---CCCCCCHHHH----HHHHHHSTTT
T ss_pred ----HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH----HHHHHHHHHH
Confidence 29999999999999 9999999999999999 4677776653
No 65
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.97 E-value=1.1e-31 Score=336.48 Aligned_cols=205 Identities=21% Similarity=0.367 Sum_probs=156.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++|+|++. ++++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|. .+|
T Consensus 671 mL~v~nLs~~Y~g~-~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~~I 738 (986)
T 2iw3_A 671 IVKVTNMEFQYPGT-SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------CRI 738 (986)
T ss_dssp EEEEEEEEECCTTC-SSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------CCE
T ss_pred eEEEEeeEEEeCCC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------cce
Confidence 49999999999742 256999999999999999999999999999999999999999999999872 258
Q ss_pred EEEcCCCCC-----CcccHHHHHhcCC-----------------------------------------------------
Q 001041 463 GLVSQEPVL-----FTGSIKDNIAYGK----------------------------------------------------- 484 (1178)
Q Consensus 463 ~~v~Q~~~l-----~~~ti~~ni~~~~----------------------------------------------------- 484 (1178)
+|++|++.. ...|+++++.+..
T Consensus 739 ~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e 818 (986)
T 2iw3_A 739 AYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYE 818 (986)
T ss_dssp EEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEE
T ss_pred EeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhh
Confidence 899887631 2346666653210
Q ss_pred -------------C---CCC--------H----HHHHHH---------H--------HHhcHHHHHHhCCCCccch--hc
Q 001041 485 -------------D---DAT--------T----EEIRVA---------T--------ELANAAKFIDKLPQGIDTL--VG 517 (1178)
Q Consensus 485 -------------~---~~~--------~----~~~~~~---------~--------~~~~~~~~i~~~~~g~~t~--~~ 517 (1178)
. ..+ . +..... . ....+.+.++.+ |++.. ..
T Consensus 819 ~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~l--GL~~~~~~~ 896 (986)
T 2iw3_A 819 CSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSML--GLDPEIVSH 896 (986)
T ss_dssp EEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHT--TCCHHHHHH
T ss_pred hhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHc--CCCchhhcC
Confidence 0 000 0 000000 0 001223344444 56543 35
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhh-ccCEEEEEeCC
Q 001041 518 EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRG 596 (1178)
Q Consensus 518 ~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~~G 596 (1178)
....+||||||||++||||++.+|++|||||||++||+.+...+.+.|+++ +.|+|+|||+++.+. .||+|++|++|
T Consensus 897 ~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~DrVivL~~G 974 (986)
T 2iw3_A 897 SRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLTEEVWAVKDG 974 (986)
T ss_dssp SCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTCCEEECCBTT
T ss_pred CCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 567789999999999999999999999999999999999999999988765 579999999999986 49999999999
Q ss_pred EEEEecC
Q 001041 597 KIVEKGT 603 (1178)
Q Consensus 597 ~i~~~g~ 603 (1178)
++++.|+
T Consensus 975 ~Iv~~G~ 981 (986)
T 2iw3_A 975 RMTPSGH 981 (986)
T ss_dssp BCCC---
T ss_pred EEEEeCC
Confidence 9987664
No 66
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.7e-31 Score=319.13 Aligned_cols=198 Identities=24% Similarity=0.386 Sum_probs=161.9
Q ss_pred EeEEEECCCCCCCccccceeEEEeCC-----CEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcc
Q 001041 387 RDVYFSYPARPNEQIFSGFSISISSG-----TTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1178)
Q Consensus 387 ~~~~~~y~~~~~~~~l~~i~l~i~~g-----~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1178)
++++|+|+.. ..+++++||++++| |+++|+||||||||||+++|.|+++|++|+. +. +..
T Consensus 350 ~~~~~~y~~~--~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~-~~------------~~~ 414 (608)
T 3j16_B 350 ASRAFSYPSL--KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD-IP------------KLN 414 (608)
T ss_dssp SSSCCEECCE--EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC-CC------------SCC
T ss_pred cceeEEecCc--ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC-cc------------CCc
Confidence 5678888642 35899999999999 7899999999999999999999999999973 11 236
Q ss_pred eEEEcCCCC-CCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhc
Q 001041 462 IGLVSQEPV-LFTGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1178)
Q Consensus 462 i~~v~Q~~~-l~~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~ 538 (1178)
++|+||++. .|..|+++|+..... ....+...++++.. |+.........+||||||||++|||||.
T Consensus 415 i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l-----------~l~~~~~~~~~~LSGGqkQRv~iAraL~ 483 (608)
T 3j16_B 415 VSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPL-----------RIDDIIDQEVQHLSGGELQRVAIVLALG 483 (608)
T ss_dssp EEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHH-----------TSTTTSSSBSSSCCHHHHHHHHHHHHTT
T ss_pred EEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHc-----------CChhhhcCChhhCCHHHHHHHHHHHHHH
Confidence 999999975 467899999864321 12233333333322 3444455667789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhhc-cCEEEEEeC--CEEEEecChhHHhcC
Q 001041 539 KDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHR--GKIVEKGTHSKLVED 610 (1178)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~--G~i~~~g~~~~l~~~ 610 (1178)
.+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||||++|++ |+++..|+|++++..
T Consensus 484 ~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp SCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred hCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 9999999999999999999999999998864 48999999999999875 999999996 999999999998763
No 67
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.96 E-value=7.9e-30 Score=319.22 Aligned_cols=202 Identities=25% Similarity=0.378 Sum_probs=148.7
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHh----------------------ccCCCCCCcEEECCeecCCCCHH
Q 001041 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIE----------------------RFYDPQAGEVLIDGINLKEFQLQ 456 (1178)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~----------------------g~~~~~~G~i~i~g~~~~~~~~~ 456 (1178)
..+|+|+||+|++||+++|+||||||||||+++|+ |+. +.+|.|.++|.++...+..
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~-~~~~~i~~~~~~~~~~~~~ 413 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLE-HLDKVIDIDQSPIGRTPRS 413 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGG-GCSEEEECCSSCSCSSTTC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccc-ccCceeEeccccCCCCCCc
Confidence 35899999999999999999999999999998764 222 3346788888877644321
Q ss_pred HHhc-----------------------------------------ceEEEcCCCCC------------------------
Q 001041 457 WIRK-----------------------------------------KIGLVSQEPVL------------------------ 471 (1178)
Q Consensus 457 ~~r~-----------------------------------------~i~~v~Q~~~l------------------------ 471 (1178)
..+. ..+++.|+..+
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (670)
T 3ux8_A 414 NPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVT 493 (670)
T ss_dssp CHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCC
T ss_pred chhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhee
Confidence 1000 11233332211
Q ss_pred ---------CcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHHHHHHHHHHhccCC
Q 001041 472 ---------FTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1178)
Q Consensus 472 ---------~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~-t~~~~~g~~lSgGqkqri~lARal~~~~ 541 (1178)
+..|++||+.+.... . ...++ .+.+..+ |+. ...++...+||||||||++|||||+.+|
T Consensus 494 ~~~~~~~~~~~ltv~e~l~~~~~~--~-~~~~~------~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p 562 (670)
T 3ux8_A 494 YKGKNIAEVLDMTVEDALDFFASI--P-KIKRK------LETLYDV--GLGYMKLGQPATTLSGGEAQRVKLAAELHRRS 562 (670)
T ss_dssp BTTBCHHHHHTSBHHHHHHHTTTC--H-HHHHH------HHHHHHT--TCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCC
T ss_pred ecCCCHHHHhhCCHHHHHHHHHHh--h-hHHHH------HHHHHHc--CCchhhccCCchhCCHHHHHHHHHHHHHhhCC
Confidence 135889999875432 1 11111 1223333 333 2346777899999999999999999886
Q ss_pred ---CEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhccCEEEEE------eCCEEEEecChhHHhcCC
Q 001041 542 ---RILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVI------HRGKIVEKGTHSKLVEDP 611 (1178)
Q Consensus 542 ---~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~~~ 611 (1178)
++|||||||++||+.+.+.+.+.++++. +++|+|+|||+++.+..||+|++| ++|+|++.|+++++.+..
T Consensus 563 ~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~~~ 642 (670)
T 3ux8_A 563 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVK 642 (670)
T ss_dssp CSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHHTCT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHHhCC
Confidence 5999999999999999999999998875 478999999999999889999999 899999999999998764
Q ss_pred C
Q 001041 612 E 612 (1178)
Q Consensus 612 ~ 612 (1178)
.
T Consensus 643 ~ 643 (670)
T 3ux8_A 643 E 643 (670)
T ss_dssp T
T ss_pred c
Confidence 3
No 68
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.96 E-value=6.9e-29 Score=309.29 Aligned_cols=99 Identities=24% Similarity=0.427 Sum_probs=87.8
Q ss_pred Cccch-hcCCCCCCChHHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc
Q 001041 511 GIDTL-VGEHGTQLSGGQKQRIAIARAILKDP--RILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN 586 (1178)
Q Consensus 511 g~~t~-~~~~g~~lSgGqkqri~lARal~~~~--~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~ 586 (1178)
|++.. .+....+|||||||||+|||||.++| ++|||||||++||++..+.+.+.++.+. .+.|+|+|+|+++.+..
T Consensus 367 GL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~~ 446 (842)
T 2vf7_A 367 GLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIRR 446 (842)
T ss_dssp TCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHTT
T ss_pred CCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHh
Confidence 66644 57777899999999999999999999 4999999999999999999999888775 47899999999999988
Q ss_pred cCEEEEE------eCCEEEEecChhHHhc
Q 001041 587 ADMIAVI------HRGKIVEKGTHSKLVE 609 (1178)
Q Consensus 587 ~d~i~~l------~~G~i~~~g~~~~l~~ 609 (1178)
||+|++| ++|++++.|+++++.+
T Consensus 447 aD~ii~lgpgaG~~~G~iv~~g~~~~~~~ 475 (842)
T 2vf7_A 447 ADWLVDVGPEAGEKGGEILYSGPPEGLKH 475 (842)
T ss_dssp CSEEEEECSSSGGGCCSEEEEECGGGGGG
T ss_pred CCEEEEeCCCcccCCCEEEEecCHHHHHh
Confidence 9999999 7899999998876643
No 69
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.96 E-value=1.2e-28 Score=309.51 Aligned_cols=205 Identities=27% Similarity=0.465 Sum_probs=151.2
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHH---------HHHhccCCCC------CC------cEEECCeecCCCCH---
Q 001041 400 QIFSGFSISISSGTTAALVGQSGSGKSTVI---------SLIERFYDPQ------AG------EVLIDGINLKEFQL--- 455 (1178)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~---------~~l~g~~~~~------~G------~i~i~g~~~~~~~~--- 455 (1178)
..|+|+||+|++|++++|+|+||||||||+ +.+.+...+. +| .+.+|+.++.....
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 479999999999999999999999999997 3333333222 23 24455544432210
Q ss_pred -------HHHh-------------------------------cceEEEcCCCCCC-------------------------
Q 001041 456 -------QWIR-------------------------------KKIGLVSQEPVLF------------------------- 472 (1178)
Q Consensus 456 -------~~~r-------------------------------~~i~~v~Q~~~l~------------------------- 472 (1178)
+.+| +..|+++|+..++
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 1111 2356777776544
Q ss_pred --------cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccc-hhcCCCCCCChHHHHHHHHHHHhccCC--
Q 001041 473 --------TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSGGQKQRIAIARAILKDP-- 541 (1178)
Q Consensus 473 --------~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t-~~~~~g~~lSgGqkqri~lARal~~~~-- 541 (1178)
..|++|++.|.......++.. +.++.+ |+.. .+++.+.+|||||||||+|||||+++|
T Consensus 758 g~~i~~vl~~tv~eal~f~~~~~~~~~~~---------~~L~~v--GL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~ 826 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKNIPSIKRTL---------QVLHDV--GLGYVKLGQPATTLSGGEAQRIKLASELRKRDTG 826 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTTCHHHHHHH---------HHHHHT--TGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCS
T ss_pred cCCHHHHhhCCHHHHHHHHhcchhHHHHH---------HHHHHc--CCchhhccCCccCCCHHHHHHHHHHHHHhhCCCC
Confidence 246777777643321112222 223333 4443 468889999999999999999999875
Q ss_pred -CEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhccCEEEEE------eCCEEEEecChhHHhcCCCc
Q 001041 542 -RILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVI------HRGKIVEKGTHSKLVEDPEG 613 (1178)
Q Consensus 542 -~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~~~~~ 613 (1178)
++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+..||+|++| ++|+|++.|+|+++++++ +
T Consensus 827 p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~-~ 905 (916)
T 3pih_A 827 RTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNP-H 905 (916)
T ss_dssp SEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSCT-T
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhCC-c
Confidence 7999999999999999999999998875 489999999999999999999999 899999999999999874 3
Q ss_pred hHH
Q 001041 614 AYS 616 (1178)
Q Consensus 614 ~~~ 616 (1178)
.|.
T Consensus 906 syt 908 (916)
T 3pih_A 906 SYT 908 (916)
T ss_dssp CHH
T ss_pred hHH
Confidence 443
No 70
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.95 E-value=8.2e-28 Score=299.61 Aligned_cols=211 Identities=25% Similarity=0.394 Sum_probs=156.4
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHH-HhccC-------CC---------------
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISL-IERFY-------DP--------------- 438 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~-l~g~~-------~~--------------- 438 (1178)
..++++|+++ ..|+|+||+|++||+++|+|+||||||||++. |.|.+ .|
T Consensus 501 ~~L~v~~l~~--------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~ 572 (842)
T 2vf7_A 501 GWLELNGVTR--------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAG 572 (842)
T ss_dssp CEEEEEEEEE--------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------C
T ss_pred ceEEEEeeee--------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccc
Confidence 4599999975 16999999999999999999999999999996 66543 22
Q ss_pred ---CCC-------cEEECCeecCCCCH----------HHHhcceEEEc---------CC---------------------
Q 001041 439 ---QAG-------EVLIDGINLKEFQL----------QWIRKKIGLVS---------QE--------------------- 468 (1178)
Q Consensus 439 ---~~G-------~i~i~g~~~~~~~~----------~~~r~~i~~v~---------Q~--------------------- 468 (1178)
.+| .|.+||.++...+. +.+|..++++| +.
T Consensus 573 ~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~ 652 (842)
T 2vf7_A 573 SARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMV 652 (842)
T ss_dssp CCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEE
T ss_pred cccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccch
Confidence 356 57889888754332 33443332222 11
Q ss_pred -CCCC-------------------------cccHHHHHh--------cCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccc
Q 001041 469 -PVLF-------------------------TGSIKDNIA--------YGKDDATTEEIRVATELANAAKFIDKLPQGIDT 514 (1178)
Q Consensus 469 -~~l~-------------------------~~ti~~ni~--------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t 514 (1178)
-.++ .-+|.||+. |... . .... ...+.++.+ |+..
T Consensus 653 ~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~--~-~~~~------~~~~~L~~~--gL~~ 721 (842)
T 2vf7_A 653 ELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFAD--E-SAIF------RALDTLREV--GLGY 721 (842)
T ss_dssp TTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTT--S-HHHH------HHHHHHHHT--TCTT
T ss_pred hhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhc--c-hHHH------HHHHHHHHc--CCCc
Confidence 0111 124555543 3211 0 1111 123344554 5555
Q ss_pred -hhcCCCCCCChHHHHHHHHHHHhccC---CCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhccCE
Q 001041 515 -LVGEHGTQLSGGQKQRIAIARAILKD---PRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADM 589 (1178)
Q Consensus 515 -~~~~~g~~lSgGqkqri~lARal~~~---~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~ 589 (1178)
.++....+||||||||++|||+|.++ |++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+..||+
T Consensus 722 ~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDr 801 (842)
T 2vf7_A 722 LRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDW 801 (842)
T ss_dssp SBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSE
T ss_pred ccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCE
Confidence 36788889999999999999999996 79999999999999999999999998874 58999999999999988999
Q ss_pred EEEE------eCCEEEEecChhHHhcCC
Q 001041 590 IAVI------HRGKIVEKGTHSKLVEDP 611 (1178)
Q Consensus 590 i~~l------~~G~i~~~g~~~~l~~~~ 611 (1178)
|++| ++|+|++.|+++++.+.+
T Consensus 802 ii~L~p~~g~~~G~Iv~~g~~~el~~~~ 829 (842)
T 2vf7_A 802 VLDIGPGAGEDGGRLVAQGTPAEVAQAA 829 (842)
T ss_dssp EEEECSSSGGGCCSEEEEECHHHHTTCT
T ss_pred EEEECCCCCCCCCEEEEEcCHHHHHhCc
Confidence 9999 699999999999998763
No 71
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.94 E-value=2.9e-27 Score=293.78 Aligned_cols=211 Identities=26% Similarity=0.388 Sum_probs=157.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHh-ccC-------CCCCC-------------
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIE-RFY-------DPQAG------------- 441 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~-g~~-------~~~~G------------- 441 (1178)
.++++|++. ..|+|+||+|++||+++|+|+||||||||++.|+ |.+ .+..|
T Consensus 629 ~L~v~~l~~--------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 700 (972)
T 2r6f_A 629 WLEVVGARE--------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDK 700 (972)
T ss_dssp EEEEEEECS--------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSE
T ss_pred EEEEecCcc--------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccce
Confidence 588888741 2699999999999999999999999999999864 221 12233
Q ss_pred cEEECCeecCCCC---HH-------HHh---------cceEEEcCCCCC---------------------C---------
Q 001041 442 EVLIDGINLKEFQ---LQ-------WIR---------KKIGLVSQEPVL---------------------F--------- 472 (1178)
Q Consensus 442 ~i~i~g~~~~~~~---~~-------~~r---------~~i~~v~Q~~~l---------------------~--------- 472 (1178)
.|.+||.++.... +. .+| +.++|++|..-+ |
T Consensus 701 ~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce 780 (972)
T 2r6f_A 701 VIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCE 780 (972)
T ss_dssp EEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECT
T ss_pred EEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccc
Confidence 3778888774321 11 111 246888885321 0
Q ss_pred -------------------------cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccc-hhcCCCCCCChH
Q 001041 473 -------------------------TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSGG 526 (1178)
Q Consensus 473 -------------------------~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t-~~~~~g~~lSgG 526 (1178)
..|+.||+.|... . ....+ ..+.++.+ |+.. ..+....+||||
T Consensus 781 ~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~-~--~~~~~------~~~~L~~~--gL~~~~l~~~~~~LSGG 849 (972)
T 2r6f_A 781 VCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFAS-I--PKIKR------KLETLYDV--GLGYMKLGQPATTLSGG 849 (972)
T ss_dssp TTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCS-C--HHHHH------HHHHHHHT--TCSSSBTTCCGGGCCHH
T ss_pred ccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhc-c--hhHHH------HHHHHHHc--CCCcccccCchhhCCHH
Confidence 1256666665322 1 11111 12334444 5665 567888899999
Q ss_pred HHHHHHHHHHhccCC---CEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhccCEEEEE------eCC
Q 001041 527 QKQRIAIARAILKDP---RILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVI------HRG 596 (1178)
Q Consensus 527 qkqri~lARal~~~~---~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l------~~G 596 (1178)
||||++|||||+++| ++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+..||+|++| ++|
T Consensus 850 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G 929 (972)
T 2r6f_A 850 EAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGG 929 (972)
T ss_dssp HHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSCC
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCC
Confidence 999999999999875 9999999999999999999999998865 579999999999999889999999 789
Q ss_pred EEEEecChhHHhcCCC
Q 001041 597 KIVEKGTHSKLVEDPE 612 (1178)
Q Consensus 597 ~i~~~g~~~~l~~~~~ 612 (1178)
+|++.|+++++.+.+.
T Consensus 930 ~Iv~~g~~~el~~~~~ 945 (972)
T 2r6f_A 930 QIVAVGTPEEVAEVKE 945 (972)
T ss_dssp SEEEEESHHHHHTCTT
T ss_pred EEEEecCHHHHHhCch
Confidence 9999999999987643
No 72
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.94 E-value=9.3e-27 Score=276.27 Aligned_cols=201 Identities=19% Similarity=0.288 Sum_probs=151.2
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC--------------------------------------CCCC
Q 001041 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD--------------------------------------PQAG 441 (1178)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~--------------------------------------~~~G 441 (1178)
..+++++|++.+| +++|+||||||||||+++|.++.. +.+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 3789999999999 999999999999999999977664 3468
Q ss_pred cEEECCeecCCCCHHHHhcc-eEEEcCCCCCCcccHHHHHhcCCCCCCH--H-------HHHHHHH--------------
Q 001041 442 EVLIDGINLKEFQLQWIRKK-IGLVSQEPVLFTGSIKDNIAYGKDDATT--E-------EIRVATE-------------- 497 (1178)
Q Consensus 442 ~i~i~g~~~~~~~~~~~r~~-i~~v~Q~~~l~~~ti~~ni~~~~~~~~~--~-------~~~~~~~-------------- 497 (1178)
++.+||.+++..++.++... +++++|++.++..+..++..|-...... . ++.++.+
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~ 207 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHP 207 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence 89999999987777777766 8999999987766555444332111100 0 0000000
Q ss_pred ---------------------------------H-hcHHHHHHhC--CC----------------Cccc---hhcCCCCC
Q 001041 498 ---------------------------------L-ANAAKFIDKL--PQ----------------GIDT---LVGEHGTQ 522 (1178)
Q Consensus 498 ---------------------------------~-~~~~~~i~~~--~~----------------g~~t---~~~~~g~~ 522 (1178)
. ..+.+.+..+ |. |.+. .++.++..
T Consensus 208 ~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 287 (415)
T 4aby_A 208 TSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGE 287 (415)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCC
Confidence 0 0111122222 11 2221 34444434
Q ss_pred --------CChHHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEE
Q 001041 523 --------LSGGQKQRIAIARAILKDP--RILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAV 592 (1178)
Q Consensus 523 --------lSgGqkqri~lARal~~~~--~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~ 592 (1178)
||||||||++|||+++.+| ++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+..||++++
T Consensus 288 ~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~ 367 (415)
T 4aby_A 288 ELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYK 367 (415)
T ss_dssp CCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEE
T ss_pred cccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEE
Confidence 8999999999999999999 999999999999999999999999998778999999999999888999999
Q ss_pred E----eCCEEEEe
Q 001041 593 I----HRGKIVEK 601 (1178)
Q Consensus 593 l----~~G~i~~~ 601 (1178)
| ++|+++..
T Consensus 368 l~k~~~~G~~~~~ 380 (415)
T 4aby_A 368 VEKQVEDGRTVSH 380 (415)
T ss_dssp EEEEEETTEEEEE
T ss_pred EEEeccCCceEEE
Confidence 9 99998754
No 73
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.94 E-value=1.2e-26 Score=289.51 Aligned_cols=211 Identities=23% Similarity=0.370 Sum_probs=155.5
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHh-c----cCC---CCCCc-----------
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIE-R----FYD---PQAGE----------- 442 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~-g----~~~---~~~G~----------- 442 (1178)
..++++|++. ..|+|+||+|++|++++|+|+||||||||+++|+ | .+. +..|.
T Consensus 646 ~~L~v~~l~~--------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~ 717 (993)
T 2ygr_A 646 RQLTVVGARE--------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLD 717 (993)
T ss_dssp SEEEEEEECS--------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCS
T ss_pred ceEEEecCcc--------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccc
Confidence 3588998851 2699999999999999999999999999999854 2 222 23343
Q ss_pred --EEECCeecCCC---CHH-------HHh---------cceEEEcCCCCC---------------------C--------
Q 001041 443 --VLIDGINLKEF---QLQ-------WIR---------KKIGLVSQEPVL---------------------F-------- 472 (1178)
Q Consensus 443 --i~i~g~~~~~~---~~~-------~~r---------~~i~~v~Q~~~l---------------------~-------- 472 (1178)
|.+|+.++... ++. .+| +..+|++|..-+ |
T Consensus 718 ~~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~c 797 (993)
T 2ygr_A 718 KLVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPC 797 (993)
T ss_dssp EEECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEEC
T ss_pred eEEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeee
Confidence 45566555321 111 112 245777775321 0
Q ss_pred --------------------------cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccc-hhcCCCCCCCh
Q 001041 473 --------------------------TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSG 525 (1178)
Q Consensus 473 --------------------------~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t-~~~~~g~~lSg 525 (1178)
..|+.+|+.|... . ....+ ..+.++.+ |+.. ..+....+|||
T Consensus 798 e~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~-~--~~~~~------~~~~L~~l--gL~~~~l~~~~~~LSG 866 (993)
T 2ygr_A 798 EVCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEP-I--AGVHR------YLRTLVDV--GLGYVRLGQPAPTLSG 866 (993)
T ss_dssp TTTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTT-C--HHHHH------HHHHHHHT--TGGGSBTTCCGGGSCH
T ss_pred hhccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhc-c--hHHHH------HHHHHHHc--CCCcccccCccccCCH
Confidence 1245556554321 1 11111 12334444 6666 57888899999
Q ss_pred HHHHHHHHHHHhccCC---CEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhccCEEEEE------eC
Q 001041 526 GQKQRIAIARAILKDP---RILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVI------HR 595 (1178)
Q Consensus 526 Gqkqri~lARal~~~~---~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l------~~ 595 (1178)
|||||++|||||+++| ++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+..||+|++| ++
T Consensus 867 GekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gg~~~ 946 (993)
T 2ygr_A 867 GEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWIIDLGPEGGAGG 946 (993)
T ss_dssp HHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSTTSC
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCcCCCC
Confidence 9999999999999875 9999999999999999999999998764 589999999999999889999999 68
Q ss_pred CEEEEecChhHHhcCC
Q 001041 596 GKIVEKGTHSKLVEDP 611 (1178)
Q Consensus 596 G~i~~~g~~~~l~~~~ 611 (1178)
|+|++.|+++++.+.+
T Consensus 947 G~Iv~~G~~~el~~~~ 962 (993)
T 2ygr_A 947 GTVVAQGTPEDVAAVP 962 (993)
T ss_dssp SEEEEEECHHHHHHCT
T ss_pred CEEEEecCHHHHHhCC
Confidence 9999999999998763
No 74
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.94 E-value=9.8e-27 Score=253.41 Aligned_cols=134 Identities=34% Similarity=0.650 Sum_probs=123.9
Q ss_pred ccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHh
Q 001041 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1178)
Q Consensus 1041 g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~ 1120 (1178)
.+|+++||+|+|+++ +.++|+||||+|++||++||+||||||||||+++|+|+++|++|+|++||.|+.+++...+|++
T Consensus 6 ~~~~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 6 HDITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CceeEEEEEEEeCCC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 469999999999421 3469999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhccccccccc
Q 001041 1121 MGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1178)
Q Consensus 1121 IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v 1176 (1178)
|++|||+|.+|++|++|||.++. +..++++++++++.+++.+++.++|+|+++.+
T Consensus 85 i~~v~Q~~~l~~~tv~enl~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~ 139 (247)
T 2ff7_A 85 VGVVLQDNVLLNRSIIDNISLAN-PGMSVEKVIYAAKLAGAHDFISELREGYNTIV 139 (247)
T ss_dssp EEEECSSCCCTTSBHHHHHTTTC-TTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBC
T ss_pred EEEEeCCCccccccHHHHHhccC-CCCCHHHHHHHHHHhChHHHHHhCcchhhhhh
Confidence 99999999999999999999974 35678899999999999999999999999865
No 75
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.2e-30 Score=304.26 Aligned_cols=180 Identities=13% Similarity=0.135 Sum_probs=144.0
Q ss_pred cceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCC-c-EEECCeecCCCCHHHHhcceEEEcCCCCCC----cccH
Q 001041 403 SGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG-E-VLIDGINLKEFQLQWIRKKIGLVSQEPVLF----TGSI 476 (1178)
Q Consensus 403 ~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G-~-i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~----~~ti 476 (1178)
.++||++++|++++|+||||||||||+++|+|++.|++| + |.+|| + .|+.++|+||++.+| ..|+
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~~~i~~vpq~~~l~~~~~~~tv 199 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQQPIFTVPGCISATPISDILDA 199 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TTSCSSSCSSCCEEEECCSCCCT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------ccCCeeeeccchhhcccccccch
Confidence 378999999999999999999999999999999999999 9 99998 1 367899999998543 3589
Q ss_pred HHHHhcCCCCC----CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHH--hccCCCE----EEE
Q 001041 477 KDNIAYGKDDA----TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA--ILKDPRI----LLL 546 (1178)
Q Consensus 477 ~~ni~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARa--l~~~~~i----lll 546 (1178)
+||+ |+.... ..+++.. .+..+ |++.... ..+||||||||++|||| |+.+|++ |||
T Consensus 200 ~eni-~~~~~~~~~~~~~~~~~---------ll~~~--gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlL 265 (460)
T 2npi_A 200 QLPT-WGQSLTSGATLLHNKQP---------MVKNF--GLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIV 265 (460)
T ss_dssp TCTT-CSCBCBSSCCSSCCBCC---------EECCC--CSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEE
T ss_pred hhhh-cccccccCcchHHHHHH---------HHHHh--CCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEE
Confidence 9999 764310 1111111 11111 4544443 67899999999999999 9999999 999
Q ss_pred eC-CCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcc------hh-hccCE-----EEEEe-CCEEEEecChhHHhc
Q 001041 547 DE-ATSALDAESEKVVQEALDRIMVNRTTVIVAHRLS------TV-RNADM-----IAVIH-RGKIVEKGTHSKLVE 609 (1178)
Q Consensus 547 De-~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~------~~-~~~d~-----i~~l~-~G~i~~~g~~~~l~~ 609 (1178)
|| ||++||+. .+.+.+.+++. +.|+|+|+|+.+ .+ ..||+ |++|+ +|+++ .|+++++.+
T Consensus 266 DEpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~~ 338 (460)
T 2npi_A 266 DTPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKRS 338 (460)
T ss_dssp ECCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHHH
T ss_pred eCCcccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHhh
Confidence 99 99999999 66666666653 689999999987 44 35899 99999 99999 999988743
No 76
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.93 E-value=8e-26 Score=248.18 Aligned_cols=134 Identities=40% Similarity=0.664 Sum_probs=122.6
Q ss_pred ccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHh
Q 001041 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1178)
Q Consensus 1041 g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~ 1120 (1178)
+.|+++||+|+|++.+..++|+||||+|++||++||+||||||||||+++|.|+++| +|+|.+||.|+.+++...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 469999999999743224699999999999999999999999999999999999997 8999999999999998999999
Q ss_pred ccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhccccccccc
Q 001041 1121 MGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1178)
Q Consensus 1121 IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v 1176 (1178)
|++|||+|.+|++|++|||.++.. ..+++++.++++.+++.+++..+|+|+||.+
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~ 149 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKL-DATDEEVIKATKSAQLYDFIEALPKKWDTIV 149 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCT-TCCHHHHHHHHHHTTCHHHHHTSTTGGGCEE
T ss_pred EEEEcCCCcccccCHHHHHhccCC-CCCHHHHHHHHHHhCCHHHHHhccccccccc
Confidence 999999999999999999999743 4578889999999999999999999999864
No 77
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.93 E-value=2.8e-26 Score=249.71 Aligned_cols=132 Identities=36% Similarity=0.675 Sum_probs=121.6
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
|+++||+|+|++ +.++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.|+.+.+...+|++|+
T Consensus 2 l~~~~l~~~y~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEEeCC--CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 789999999952 346999999999999999999999999999999999999999999999999999988888999999
Q ss_pred ccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhccccccccc
Q 001041 1123 LVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1178)
Q Consensus 1123 iV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v 1176 (1178)
+|||+|.+|++|++|||.++..+..++++++++++.+++++++.++|+|+++.+
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~ 133 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEV 133 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEE
T ss_pred EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchh
Confidence 999999999999999999972235678899999999999999999999998864
No 78
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.92 E-value=1.4e-25 Score=247.61 Aligned_cols=136 Identities=41% Similarity=0.705 Sum_probs=122.3
Q ss_pred cccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHH
Q 001041 1040 KGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ 1119 (1178)
Q Consensus 1040 ~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~ 1119 (1178)
.+.|+++||+|+|+++++.++|+||||+|++||.+||+||||||||||+++|+|+++|++|+|++||.|+.+++...+|+
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 45699999999996422246999999999999999999999999999999999999999999999999999998889999
Q ss_pred hccccccccccccccHHHHHhcCCCCCCCH-HHHHHHHHHcCchHHHhhccccccccc
Q 001041 1120 QMGLVSQEPVLFNDTIRANIAYGKGGDATE-AEIQAASEMANAHKFICSLQQVRTSRL 1176 (1178)
Q Consensus 1120 ~IsiV~Qdp~LF~gTIreNI~~g~~~~asd-eei~~Al~~A~~~dfI~~LP~gldT~v 1176 (1178)
+|++|||+|.+|++|++|||.++.. ..++ +++.++++.+++++++..+|+|+++.+
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~ 150 (271)
T 2ixe_A 94 QVAAVGQEPLLFGRSFRENIAYGLT-RTPTMEEITAVAMESGAHDFISGFPQGYDTEV 150 (271)
T ss_dssp HEEEECSSCCCCSSBHHHHHHTTCS-SCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBC
T ss_pred cEEEEecCCccccccHHHHHhhhcc-cCChHHHHHHHHHHHhHHHHHHhhhcchhhhh
Confidence 9999999999999999999999743 3444 778889999999999999999998754
No 79
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.92 E-value=1.7e-24 Score=272.14 Aligned_cols=158 Identities=30% Similarity=0.448 Sum_probs=115.9
Q ss_pred HHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCC------CC-CCHHHHHHHHHHhcHH
Q 001041 430 SLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGK------DD-ATTEEIRVATELANAA 502 (1178)
Q Consensus 430 ~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~------~~-~~~~~~~~~~~~~~~~ 502 (1178)
.+.-+-+.|..|+|.++|.++.++.. .|+.+|+.|.. .+ ....+.....+ ...
T Consensus 386 ~C~g~rl~~~~~~V~i~G~~i~~~~~------------------~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~--~~~ 445 (916)
T 3pih_A 386 VCGGRRLNREALSVKINGLNIHEFTE------------------LSISEELEFLKNLNLTEREREIVGELLKEIE--KRL 445 (916)
T ss_dssp TTCSCCBCTTGGGEEETTEEHHHHHH------------------SBHHHHHHHHHSCCCCTTTTTTHHHHHHHHH--HHH
T ss_pred hcccccCChHhcCcEECCccHHHhhh------------------CCHHHHHHHHHhccCcHHHHHHHHhhHHHHH--HHH
Confidence 33445678889999999988754332 24444443311 00 01111111111 112
Q ss_pred HHHHhCCCCccch-hcCCCCCCChHHHHHHHHHHHhccCCC--EEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEe
Q 001041 503 KFIDKLPQGIDTL-VGEHGTQLSGGQKQRIAIARAILKDPR--ILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVA 578 (1178)
Q Consensus 503 ~~i~~~~~g~~t~-~~~~g~~lSgGqkqri~lARal~~~~~--illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~it 578 (1178)
+.+..+ |++.. .+....+||||||||++|||||.++|+ +|||||||++||+...+.+.+.++++. +++|+|+|+
T Consensus 446 ~~L~~v--gL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVt 523 (916)
T 3pih_A 446 EFLVDV--GLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVE 523 (916)
T ss_dssp HHHHTT--TCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEEC
T ss_pred HHHHHc--CCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 344443 66543 466678899999999999999999877 999999999999999999999998875 478999999
Q ss_pred cCcchhhccCEEEEE------eCCEEEEecChhHHhc
Q 001041 579 HRLSTVRNADMIAVI------HRGKIVEKGTHSKLVE 609 (1178)
Q Consensus 579 H~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~ 609 (1178)
|+++.+..||+|++| ++|++++.|+++++++
T Consensus 524 Hd~~~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 524 HDEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp CCHHHHHTCSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred CCHHHHHhCCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence 999999899999999 8999999999988764
No 80
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.92 E-value=3.2e-24 Score=266.54 Aligned_cols=149 Identities=26% Similarity=0.403 Sum_probs=111.6
Q ss_pred CCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCC-CCHHH-------HHHHHHHhcHHHHHHhC
Q 001041 437 DPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD-ATTEE-------IRVATELANAAKFIDKL 508 (1178)
Q Consensus 437 ~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~-~~~~~-------~~~~~~~~~~~~~i~~~ 508 (1178)
.|....|.++|.++. .+...||.|++.|...- .+.++ +.+..+.. +.+..+
T Consensus 433 ~~~~l~v~~~g~~i~------------------q~~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl---~~L~~v 491 (972)
T 2r6f_A 433 KKESLAVLVGGKHIG------------------EVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL---GFLQNV 491 (972)
T ss_dssp CTTTTTEESSSCBHH------------------HHHTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH---HHHHHH
T ss_pred CHHHheeEECCCcHH------------------HHhhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH---HHhhhC
Confidence 455667888886542 24567888888874221 12211 11112221 223332
Q ss_pred CCCccch-hcCCCCCCChHHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchh
Q 001041 509 PQGIDTL-VGEHGTQLSGGQKQRIAIARAILKDP--RILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTV 584 (1178)
Q Consensus 509 ~~g~~t~-~~~~g~~lSgGqkqri~lARal~~~~--~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~ 584 (1178)
|++.. .+....+|||||||||+||++|..+| ++|||||||++||+...+.+.+.|+++. .|.|+|+|+|+++.+
T Consensus 492 --GL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i 569 (972)
T 2r6f_A 492 --GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTM 569 (972)
T ss_dssp --TCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHH
T ss_pred --CCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH
Confidence 66643 56677899999999999999999984 9999999999999999999999998875 478999999999999
Q ss_pred hccCEEEEE------eCCEEEEecChhHHh
Q 001041 585 RNADMIAVI------HRGKIVEKGTHSKLV 608 (1178)
Q Consensus 585 ~~~d~i~~l------~~G~i~~~g~~~~l~ 608 (1178)
..||+|++| ++|++++.|+++++.
T Consensus 570 ~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 570 LAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp HSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred HhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 999999999 789999999887654
No 81
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.91 E-value=9.6e-25 Score=251.05 Aligned_cols=134 Identities=25% Similarity=0.459 Sum_probs=123.9
Q ss_pred ccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHH
Q 001041 1039 VKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLR 1118 (1178)
Q Consensus 1039 ~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR 1118 (1178)
..+.|+++||+++|+.+ +.++|+||||+|++||.+||+||||||||||+++|+|+++ ++|+|+|||+|+.+++.+.+|
T Consensus 16 ~~~~i~~~~l~~~y~~~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~r 93 (390)
T 3gd7_A 16 SGGQMTVKDLTAKYTEG-GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWR 93 (390)
T ss_dssp SSCCEEEEEEEEESSSS-SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHH
T ss_pred CCCeEEEEEEEEEecCC-CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHh
Confidence 45689999999999633 3569999999999999999999999999999999999998 899999999999999999999
Q ss_pred HhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhccccccccc
Q 001041 1119 QQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1178)
Q Consensus 1119 ~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v 1176 (1178)
++|++|||++.||++|++|||.+.. ...+++++++++.+++.+++.++|.+|+|.+
T Consensus 94 r~ig~v~Q~~~lf~~tv~enl~~~~--~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i 149 (390)
T 3gd7_A 94 KAFGVIPQKVFIFSGTFRKNLDPNA--AHSDQEIWKVADEVGLRSVIEQFPGKLDFVL 149 (390)
T ss_dssp HTEEEESCCCCCCSEEHHHHHCTTC--CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEE
T ss_pred CCEEEEcCCcccCccCHHHHhhhcc--ccCHHHHHHHHHHhCCHHHHhhccccccccc
Confidence 9999999999999999999998642 4678999999999999999999999998865
No 82
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.91 E-value=2e-24 Score=246.14 Aligned_cols=195 Identities=19% Similarity=0.261 Sum_probs=139.8
Q ss_pred cceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC----------------------------------------------
Q 001041 403 SGFSISISSGTTAALVGQSGSGKSTVISLIERFY---------------------------------------------- 436 (1178)
Q Consensus 403 ~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~---------------------------------------------- 436 (1178)
+++++++.+| +++|+|+||||||||+.+|..++
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 3578888999 99999999999999999998443
Q ss_pred ----CCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCC-cccHHHHHhcCCCCCC----------------HHHHHHH
Q 001041 437 ----DPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYGKDDAT----------------TEEIRVA 495 (1178)
Q Consensus 437 ----~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~ni~~~~~~~~----------------~~~~~~~ 495 (1178)
.+.+|.+.+||.+++..+...+...+++.||+..++ .|++.+|+... |... .+++.+.
T Consensus 95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~-p~~rr~~ld~~~~~~~~~~~y~rv~e~ 173 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNAS-PEELRLESSKHPTSLVPRGSYQRVNES 173 (322)
T ss_dssp EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC----------------------CHHHHHH
T ss_pred EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhcc-HHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 233468899998876555666667899999988765 89999998753 3211 0111111
Q ss_pred HHHh------------cH-HHHHHhCCCCccchhc------CCCCCCChHHHHHHHHHHHhc----cCCCEEEEeCCCCC
Q 001041 496 TELA------------NA-AKFIDKLPQGIDTLVG------EHGTQLSGGQKQRIAIARAIL----KDPRILLLDEATSA 552 (1178)
Q Consensus 496 ~~~~------------~~-~~~i~~~~~g~~t~~~------~~g~~lSgGqkqri~lARal~----~~~~illlDe~ts~ 552 (1178)
.... .+ .+....++.|+++.++ .....||||||||++||||+. .+|++|||||||++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~ 253 (322)
T 1e69_A 174 FNRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSP 253 (322)
T ss_dssp HHHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSS
T ss_pred HHHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCC
Confidence 1100 00 0011234445555432 234689999999999999996 78999999999999
Q ss_pred CCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEE--EEEeCCEEE
Q 001041 553 LDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMI--AVIHRGKIV 599 (1178)
Q Consensus 553 lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i--~~l~~G~i~ 599 (1178)
||+.....+.+.++++.+++|+|++||+.+.+..||++ ++|++|+..
T Consensus 254 LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s~ 302 (322)
T 1e69_A 254 LDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVSA 302 (322)
T ss_dssp CCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCEE
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEEE
Confidence 99999999999998876678999999998888889987 788887543
No 83
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.90 E-value=1.5e-22 Score=252.71 Aligned_cols=134 Identities=28% Similarity=0.413 Sum_probs=104.2
Q ss_pred CCCcccHHHHHhcCCCCC--CHHHH-------HHHHHHhcHHHHHHhCCCCccch-hcCCCCCCChHHHHHHHHHHHhcc
Q 001041 470 VLFTGSIKDNIAYGKDDA--TTEEI-------RVATELANAAKFIDKLPQGIDTL-VGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 470 ~l~~~ti~~ni~~~~~~~--~~~~~-------~~~~~~~~~~~~i~~~~~g~~t~-~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
.++..||.|++.|. .+. +.++. .+..+.. +++..+ |++.. .+....+|||||||||+||+||..
T Consensus 465 q~~~ltV~e~l~f~-enl~l~~~~~~i~~~i~~ei~~Rl---~~L~~v--GL~~l~l~r~~~tLSGGEkQRV~LA~aL~~ 538 (993)
T 2ygr_A 465 EVCELSIADCADFL-NALTLGPREQAIAGQVLKEIRSRL---GFLLDV--GLEYLSLSRAAATLSGGEAQRIRLATQIGS 538 (993)
T ss_dssp CSSHHHHHHHHHTT-TTTTSCHHHHHHHHHHHHHHHHHH---HHHHHH--TGGGSCTTCBGGGCCHHHHHHHHHHHHHTT
T ss_pred HHhhCCHHHHHHHH-HhcCCCHHHhHHHHHHHHHHHHHH---HHHhhC--CCCccccCCCcccCCHHHHHHHHHHHHHhh
Confidence 46788999999984 332 22110 1111111 223332 66654 577778999999999999999999
Q ss_pred C--CCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhccCEEEEE------eCCEEEEecChhHHhc
Q 001041 540 D--PRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVI------HRGKIVEKGTHSKLVE 609 (1178)
Q Consensus 540 ~--~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~ 609 (1178)
+ |++|||||||++||+...+.+.+.|+++. .|.|+|+|+|+++++..||+|++| ++|++++.|+++++.+
T Consensus 539 ~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~ 617 (993)
T 2ygr_A 539 GLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLR 617 (993)
T ss_dssp CCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHTCSEEEEECSSSGGGCCSCCEEECHHHHHH
T ss_pred CCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHHhCCEEEEecCccccCCCEEEEeeCHHHhhh
Confidence 8 58999999999999999999998888765 579999999999999999999999 6899999998877654
No 84
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.90 E-value=5.4e-26 Score=240.34 Aligned_cols=157 Identities=19% Similarity=0.215 Sum_probs=100.1
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHH
Q 001041 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKD 478 (1178)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ 478 (1178)
..+|+|+ ++||+++|+||||||||||+++|+|+ +|++|+|.. .++. .+....|++++|+||+| +|
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~--~~~~-~~~~~~~~~ig~v~q~~-------~e 77 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSR--IILT-RPAVEAGEKLGFLPGTL-------NE 77 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSE--EEEE-ECSCCTTCCCCSSCC-----------
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeee--EEec-CCchhhhcceEEecCCH-------HH
Confidence 4588985 89999999999999999999999999 999999943 3332 12223577899999998 67
Q ss_pred HH-hcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHh
Q 001041 479 NI-AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557 (1178)
Q Consensus 479 ni-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~ 557 (1178)
|+ .++.+. .+.+........+.+.++. | | |||||++||||++.+|++|||||||++ +
T Consensus 78 nl~~~~~~~--~~~~~~~~~~~~~~~~l~~---g-----------l--Gq~qrv~lAraL~~~p~lllLDEPts~----~ 135 (208)
T 3b85_A 78 KIDPYLRPL--HDALRDMVEPEVIPKLMEA---G-----------I--VEVAPLAYMRGRTLNDAFVILDEAQNT----T 135 (208)
T ss_dssp --CTTTHHH--HHHHTTTSCTTHHHHHHHT---T-----------S--EEEEEGGGGTTCCBCSEEEEECSGGGC----C
T ss_pred HHHHHHHHH--HHHHHHhccHHHHHHHHHh---C-----------C--chHHHHHHHHHHhcCCCEEEEeCCccc----c
Confidence 76 332110 0000000000111222211 1 1 999999999999999999999999999 7
Q ss_pred HHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCC
Q 001041 558 EKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRG 596 (1178)
Q Consensus 558 ~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G 596 (1178)
.+.+.+.++++.+++|+| |||+++.+.. +...++|
T Consensus 136 ~~~l~~~l~~l~~g~tii-vtHd~~~~~~---~~~~~~G 170 (208)
T 3b85_A 136 PAQMKMFLTRLGFGSKMV-VTGDITQVDL---PGGQKSG 170 (208)
T ss_dssp HHHHHHHHTTBCTTCEEE-EEEC---------------C
T ss_pred HHHHHHHHHHhcCCCEEE-EECCHHHHhC---cCCCCCc
Confidence 788888887764478888 9999886543 3334555
No 85
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.88 E-value=6.1e-24 Score=218.85 Aligned_cols=149 Identities=19% Similarity=0.264 Sum_probs=107.7
Q ss_pred ceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCC--CCcccHHHHHh
Q 001041 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPV--LFTGSIKDNIA 481 (1178)
Q Consensus 404 ~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~--l~~~ti~~ni~ 481 (1178)
|+||++++||+++|+||||||||||++++.+ |...++ .+.+| ++++|++. .+.+++.+++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~~--------~d~~~---g~~~~~~~~~~~~~~~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVIS--------SDFCR---GLMSDDENDQTVTGAAFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEEE--------HHHHH---HHHCSSTTCGGGHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEEc--------cHHHH---HHhcCcccchhhHHHHHHHHH
Confidence 6899999999999999999999999999653 222222 22333 67788762 23344333332
Q ss_pred cCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhH---
Q 001041 482 YGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE--- 558 (1178)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~--- 558 (1178)
. .. ...+..|+.+.+... ...|||||||++||||+..+|++++|||||++||+.++
T Consensus 64 ~---------------~~-----~~~~~~g~~~~~~~~-~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~ 122 (171)
T 4gp7_A 64 Y---------------IV-----SKRLQLGKLTVVDAT-NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRT 122 (171)
T ss_dssp H---------------HH-----HHHHHTTCCEEEESC-CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCS
T ss_pred H---------------HH-----HHHHhCCCeEEEECC-CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhccc
Confidence 1 00 011223555555443 45699999999999999999999999999999999944
Q ss_pred -------------HHHHHHHHHHh-cCCeEEEEecCcchhhccCEE
Q 001041 559 -------------KVVQEALDRIM-VNRTTVIVAHRLSTVRNADMI 590 (1178)
Q Consensus 559 -------------~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i 590 (1178)
+.+.+.++++. ++.|+|+|||+++.+..++++
T Consensus 123 ~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 123 DRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp SCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred CCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 66777765543 489999999999999877764
No 86
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.88 E-value=1.4e-22 Score=233.91 Aligned_cols=83 Identities=25% Similarity=0.374 Sum_probs=75.6
Q ss_pred CCCCCCChHHHHHHHHHHHhc------cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhccCEE
Q 001041 518 EHGTQLSGGQKQRIAIARAIL------KDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMI 590 (1178)
Q Consensus 518 ~~g~~lSgGqkqri~lARal~------~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i 590 (1178)
....+||||||||++||||+. .+|++|||||||++||+.+...+.+.++++. .++|+|+|||+++....||+|
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~ 354 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRK 354 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCE
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEE
Confidence 455679999999999999999 7999999999999999999999999998875 478999999999998889999
Q ss_pred EEEeCCEEEE
Q 001041 591 AVIHRGKIVE 600 (1178)
Q Consensus 591 ~~l~~G~i~~ 600 (1178)
++|++|++++
T Consensus 355 ~~l~~G~i~~ 364 (365)
T 3qf7_A 355 LRITGGVVVN 364 (365)
T ss_dssp EEEETTEEC-
T ss_pred EEEECCEEEe
Confidence 9999999974
No 87
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.87 E-value=1.6e-22 Score=217.79 Aligned_cols=120 Identities=23% Similarity=0.414 Sum_probs=107.3
Q ss_pred ccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHh
Q 001041 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1178)
Q Consensus 1041 g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~ 1120 (1178)
+.|+++||+|+|+.+ +.++|+||||+|++||.+||+||||||||||+++|+|+++|++|+|.+|| +
T Consensus 5 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~ 70 (229)
T 2pze_A 5 TEVVMENVTAFWEEG-GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 70 (229)
T ss_dssp EEEEEEEEEECSSTT-SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------C
T ss_pred ceEEEEEEEEEeCCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------E
Confidence 469999999999632 34699999999999999999999999999999999999999999999999 4
Q ss_pred ccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhccccccccc
Q 001041 1121 MGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1178)
Q Consensus 1121 IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v 1176 (1178)
|++|||+|.+|++|++|||.++. ...+..+.++++..++.+++..+|.+++|.+
T Consensus 71 i~~v~q~~~~~~~tv~enl~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 124 (229)
T 2pze_A 71 ISFCSQFSWIMPGTIKENIIFGV--SYDEYRYRSVIKACQLEEDISKFAEKDNIVL 124 (229)
T ss_dssp EEEECSSCCCCSBCHHHHHHTTS--CCCHHHHHHHHHHTTCHHHHTTSTTGGGSCB
T ss_pred EEEEecCCcccCCCHHHHhhccC--CcChHHHHHHHHHhCcHHHHHhCcccccccc
Confidence 99999999999999999999974 2345567778888999999999999988754
No 88
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.87 E-value=5.6e-23 Score=222.15 Aligned_cols=122 Identities=25% Similarity=0.407 Sum_probs=102.7
Q ss_pred EEEeeeEEeCCCCC-CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHH----
Q 001041 1043 IELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWL---- 1117 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~-~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~L---- 1117 (1178)
|+++||+++|+.++ +.++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+++...+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999996332 2469999999999999999999999999999999999999999999999999999988765
Q ss_pred HHhccccccccccccc-cHHHHHhcCC----CCCCC----HHHHHHHHHHcCchHH
Q 001041 1118 RQQMGLVSQEPVLFND-TIRANIAYGK----GGDAT----EAEIQAASEMANAHKF 1164 (1178)
Q Consensus 1118 R~~IsiV~Qdp~LF~g-TIreNI~~g~----~~~as----deei~~Al~~A~~~df 1164 (1178)
|++|++|||+|.+|.+ |++||+.++. ....+ .+++.++++..++.+.
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 137 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER 137 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGG
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChh
Confidence 4579999999999987 9999998631 00122 3457778888887654
No 89
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.86 E-value=5.6e-25 Score=235.95 Aligned_cols=166 Identities=15% Similarity=0.172 Sum_probs=118.5
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCH-HHHhcceEEEcCCCCCCc-----
Q 001041 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRKKIGLVSQEPVLFT----- 473 (1178)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~-~~~r~~i~~v~Q~~~l~~----- 473 (1178)
..|+|+||++++|++++|+||||||||||+++|+|++ | |+|.+ |+++...+. ...+..++|++|++.+|.
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 4799999999999999999999999999999999999 5 99999 877654332 234568999999986553
Q ss_pred ------ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHH-----HHHhccCCC
Q 001041 474 ------GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI-----ARAILKDPR 542 (1178)
Q Consensus 474 ------~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~l-----ARal~~~~~ 542 (1178)
+++++| .+|.+ .++++++++. +....++ .+||||||||++| ||+++.+|+
T Consensus 87 ~~~l~~~~~~~~-~~g~~---~~~i~~~l~~------------~~~~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~ 147 (218)
T 1z6g_A 87 EDFLEYDNYANN-FYGTL---KSEYDKAKEQ------------NKICLFE---MNINGVKQLKKSTHIKNALYIFIKPPS 147 (218)
T ss_dssp TCEEEEEEETTE-EEEEE---HHHHHHHHHT------------TCEEEEE---ECHHHHHHHTTCSSCCSCEEEEEECSC
T ss_pred cchhhhhhcccc-cCCCc---HHHHHHHHhC------------CCcEEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcC
Confidence 333444 22322 2333333322 2222232 5799999999999 899999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeC
Q 001041 543 ILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHR 595 (1178)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~ 595 (1178)
+++|||||+++|.+++..+++.+....+++| ++| +..+|.|+++++
T Consensus 148 ~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 148 TDVLLSRLLTRNTENQEQIQKRMEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 9999999999999999999999988766667 677 577999988764
No 90
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.86 E-value=3e-22 Score=216.78 Aligned_cols=118 Identities=25% Similarity=0.406 Sum_probs=104.7
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
|+++||+|+|+.+ +.++|+||||+|++||++|||||||||||||+++|+|+++|++|+|.+|| +|+
T Consensus 4 l~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i~ 69 (237)
T 2cbz_A 4 ITVRNATFTWARS-DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SVA 69 (237)
T ss_dssp EEEEEEEEESCTT-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CEE
T ss_pred EEEEEEEEEeCCC-CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EEE
Confidence 8999999999632 34699999999999999999999999999999999999999999999999 399
Q ss_pred ccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhccccccccc
Q 001041 1123 LVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1178)
Q Consensus 1123 iV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v 1176 (1178)
+|||+|.+|+.|++|||.++.. ..+++..++++..++.+.+..+|.|++|.+
T Consensus 70 ~v~Q~~~~~~~tv~enl~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 121 (237)
T 2cbz_A 70 YVPQQAWIQNDSLRENILFGCQ--LEEPYYRSVIQACALLPDLEILPSGDRTEI 121 (237)
T ss_dssp EECSSCCCCSEEHHHHHHTTSC--CCTTHHHHHHHHTTCHHHHTTSTTGGGSEE
T ss_pred EEcCCCcCCCcCHHHHhhCccc--cCHHHHHHHHHHHhhHHHHHhccccccccc
Confidence 9999999999999999999742 344567778888899999999998887653
No 91
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.86 E-value=1.7e-22 Score=222.50 Aligned_cols=128 Identities=20% Similarity=0.451 Sum_probs=107.3
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccC--CCChHHHHH
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ--KLQLKWLRQ 1119 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~--~i~l~~LR~ 1119 (1178)
-|+++||+++|+++ .++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|++||.|+. +.+...+|+
T Consensus 7 ~l~i~~ls~~y~~~--~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 7 ILKVEELNYNYSDG--THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEEECTTS--CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred EEEEEEEEEEECCC--CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 48999999999632 35999999999999999999999999999999999999999999999999994 445667899
Q ss_pred hcccccccc--ccccccHHHHHhcCCC-CCCC----HHHHHHHHHHcCchHHHhhcccc
Q 001041 1120 QMGLVSQEP--VLFNDTIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICSLQQV 1171 (1178)
Q Consensus 1120 ~IsiV~Qdp--~LF~gTIreNI~~g~~-~~as----deei~~Al~~A~~~dfI~~LP~g 1171 (1178)
+|++|||+| .+|..|++|||.++.. ...+ ++.+.++++..++.++..+.|..
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~ 143 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHC 143 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGG
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCccc
Confidence 999999998 5889999999987521 1123 34577888999988776655543
No 92
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.86 E-value=1.3e-23 Score=216.99 Aligned_cols=147 Identities=17% Similarity=0.211 Sum_probs=108.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHH
Q 001041 414 TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIR 493 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~ 493 (1178)
+++|+||||||||||+++|+|++. |.++|.+..+......+++++|++|++ +..+|+. +.-.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~-~~~~------- 63 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIF-SSKF------- 63 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEEE-EETT-------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHHH-Hhhc-------
Confidence 689999999999999999999984 667777654433224567899999987 2233331 1100
Q ss_pred HHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHH-----hccCCCEEEEeC--CCCCCCHHhHHHHHHHHH
Q 001041 494 VATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA-----ILKDPRILLLDE--ATSALDAESEKVVQEALD 566 (1178)
Q Consensus 494 ~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARa-----l~~~~~illlDe--~ts~lD~~~~~~i~~~i~ 566 (1178)
++ .+..+++.+.+||||||||++|||| ++.+|+++|||| ||+++|+...+.+.+.++
T Consensus 64 --------------~~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~ 127 (178)
T 1ye8_A 64 --------------FT--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMH 127 (178)
T ss_dssp --------------CC--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHT
T ss_pred --------------CC--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHh
Confidence 00 0134667778999999999999996 999999999999 999999999998888887
Q ss_pred HHhcCCeEEEEec---Ccchhhc-cCEEEEEeCCEEEE
Q 001041 567 RIMVNRTTVIVAH---RLSTVRN-ADMIAVIHRGKIVE 600 (1178)
Q Consensus 567 ~~~~~~t~i~itH---~~~~~~~-~d~i~~l~~G~i~~ 600 (1178)
+ .+.|+|+++| +.+.+.. ||+ .+|++++
T Consensus 128 ~--~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 128 D--PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp C--TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred c--CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 6 4667999996 5566654 676 5677776
No 93
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.86 E-value=6e-22 Score=217.67 Aligned_cols=126 Identities=23% Similarity=0.379 Sum_probs=110.6
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhc
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1178)
-|+++||+++|. +.++|+||||+|++||.+|||||||||||||+++|.|+++|++|+|.+||.|+.+.+.+.+|+.+
T Consensus 11 ~l~~~~l~~~~~---~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 11 LLEASHLHYHVQ---QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred eEEEEeEEEEeC---CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 489999999996 34699999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccc-ccccHHHHHhcCCCC---CCCHHHHHHHHHHcCchHHHhhccc
Q 001041 1122 GLVSQEPVL-FNDTIRANIAYGKGG---DATEAEIQAASEMANAHKFICSLQQ 1170 (1178)
Q Consensus 1122 siV~Qdp~L-F~gTIreNI~~g~~~---~asdeei~~Al~~A~~~dfI~~LP~ 1170 (1178)
++|+|++.+ |+.|++||+.++... ...++++.++++..++.++..+.|.
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 140 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYR 140 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGG
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcc
Confidence 999999977 788999999986421 2335678889999988776555443
No 94
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.86 E-value=3.1e-22 Score=226.57 Aligned_cols=132 Identities=22% Similarity=0.355 Sum_probs=110.6
Q ss_pred ccEEEeeeEEeCCCCC-CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHH--
Q 001041 1041 GEIELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWL-- 1117 (1178)
Q Consensus 1041 g~I~f~nVsf~Y~~~~-~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~L-- 1117 (1178)
.-|+++||+++|+.+. ..++|+||||+|++||.+||+||||||||||+++|.|++.|++|+|.+||.|+..++...+
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 3599999999996421 2469999999999999999999999999999999999999999999999999999987654
Q ss_pred -HHhccccccccccccc-cHHHHHhcCCC-CCCC----HHHHHHHHHHcCchHHHhhccccc
Q 001041 1118 -RQQMGLVSQEPVLFND-TIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1118 -R~~IsiV~Qdp~LF~g-TIreNI~~g~~-~~as----deei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
|++|++|||++.||.. |++|||.++.. ...+ ++.+.++++..++.++..+.|..|
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~L 164 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNL 164 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTS
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhC
Confidence 7899999999999865 99999987521 1122 345788899999988776666543
No 95
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.85 E-value=4.2e-22 Score=216.22 Aligned_cols=99 Identities=23% Similarity=0.502 Sum_probs=90.9
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHH-Hh
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLR-QQ 1120 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR-~~ 1120 (1178)
-|+++||+++|++ .++|+||||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.|+.+.+...++ ++
T Consensus 6 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred eEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 3899999999963 4699999999999999999999999999999999999999999999999999988877664 45
Q ss_pred ccccccccccccc-cHHHHHhcCC
Q 001041 1121 MGLVSQEPVLFND-TIRANIAYGK 1143 (1178)
Q Consensus 1121 IsiV~Qdp~LF~g-TIreNI~~g~ 1143 (1178)
|++|||+|.+|.+ |++||+.++.
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~ 106 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGA 106 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGG
T ss_pred EEEEecCCccCCCCcHHHHHHHhh
Confidence 9999999999987 9999999863
No 96
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.85 E-value=6e-22 Score=216.91 Aligned_cols=126 Identities=28% Similarity=0.447 Sum_probs=106.7
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccC--CCChHHHHH
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ--KLQLKWLRQ 1119 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~--~i~l~~LR~ 1119 (1178)
-|+++||+++|. +.++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+. ..+...+|+
T Consensus 24 ~l~i~~l~~~y~---~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFG---SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 499999999995 246999999999999999999999999999999999999999999999999985 345667899
Q ss_pred hccccccccccccc-cHHHHHhcCC--CCCCC----HHHHHHHHHHcCchHHHhhccc
Q 001041 1120 QMGLVSQEPVLFND-TIRANIAYGK--GGDAT----EAEIQAASEMANAHKFICSLQQ 1170 (1178)
Q Consensus 1120 ~IsiV~Qdp~LF~g-TIreNI~~g~--~~~as----deei~~Al~~A~~~dfI~~LP~ 1170 (1178)
+|++|||++.+|.. |++|||.++. ....+ ++++.++++..++.++..+.|.
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~ 158 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPD 158 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGG
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChh
Confidence 99999999999987 9999998752 11122 3467888999998877655443
No 97
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.85 E-value=7.1e-22 Score=215.63 Aligned_cols=126 Identities=17% Similarity=0.358 Sum_probs=107.2
Q ss_pred ccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHh
Q 001041 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1178)
Q Consensus 1041 g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~ 1120 (1178)
+.|+++||+++|+ +.++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.+ ....+|++
T Consensus 14 ~~l~i~~l~~~y~---~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~ 89 (256)
T 1vpl_A 14 GAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 89 (256)
T ss_dssp CCEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CeEEEEEEEEEEC---CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhc
Confidence 5699999999995 3469999999999999999999999999999999999999999999999999976 55678899
Q ss_pred ccccccccccccc-cHHHHHhcCCC-CCCC----HHHHHHHHHHcCchHHHhhccc
Q 001041 1121 MGLVSQEPVLFND-TIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICSLQQ 1170 (1178)
Q Consensus 1121 IsiV~Qdp~LF~g-TIreNI~~g~~-~~as----deei~~Al~~A~~~dfI~~LP~ 1170 (1178)
|++|||+|.+|.+ |++||+.++.. ...+ ++++.++++..++.++..+.|.
T Consensus 90 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 145 (256)
T 1vpl_A 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVS 145 (256)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGG
T ss_pred EEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChh
Confidence 9999999999987 99999987420 0112 2467888999998877655443
No 98
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.85 E-value=1.3e-21 Score=215.67 Aligned_cols=127 Identities=21% Similarity=0.399 Sum_probs=108.0
Q ss_pred EEEeeeEEeCCCCCC--ccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHh
Q 001041 1043 IELHHVSFKYPSRPD--VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~--~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~ 1120 (1178)
|+++||+++|+.+.. .++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.+. .+|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 799999999962111 4699999999999999999999999999999999999999999999999998753 78899
Q ss_pred cccccccc--ccccccHHHHHhcCCC----CCCCHHHHHHHHHHcCch--HHHhhccccc
Q 001041 1121 MGLVSQEP--VLFNDTIRANIAYGKG----GDATEAEIQAASEMANAH--KFICSLQQVR 1172 (1178)
Q Consensus 1121 IsiV~Qdp--~LF~gTIreNI~~g~~----~~asdeei~~Al~~A~~~--dfI~~LP~gl 1172 (1178)
|++|||+| .+|+.|++|||.++.. ....++++.++++..++. ++..+.|..|
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~L 139 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFL 139 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGS
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhC
Confidence 99999997 5788999999998632 122356789999999998 8877766543
No 99
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.85 E-value=6.9e-22 Score=212.15 Aligned_cols=126 Identities=21% Similarity=0.291 Sum_probs=105.3
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHH---HH
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW---LR 1118 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~---LR 1118 (1178)
-|+++||+++|++ .++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+.+... +|
T Consensus 4 ~l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 3899999999963 46999999999999999999999999999999999999999999999999998887653 44
Q ss_pred -Hhcccccccccccc-ccHHHHHhcCCC--C---CCCHHHHHHHHHHcCchHHHhhccc
Q 001041 1119 -QQMGLVSQEPVLFN-DTIRANIAYGKG--G---DATEAEIQAASEMANAHKFICSLQQ 1170 (1178)
Q Consensus 1119 -~~IsiV~Qdp~LF~-gTIreNI~~g~~--~---~asdeei~~Al~~A~~~dfI~~LP~ 1170 (1178)
++|++|||++.+|. -|++||+.++.. . ...++++.++++..++.++..+.|.
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 139 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPY 139 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGG
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChh
Confidence 78999999999986 599999987421 0 1123567888999988776554443
No 100
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.85 E-value=1.8e-23 Score=237.62 Aligned_cols=131 Identities=19% Similarity=0.237 Sum_probs=110.0
Q ss_pred cccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHH
Q 001041 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNI 480 (1178)
Q Consensus 401 ~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni 480 (1178)
+++++++.+++|+.++|+||||||||||+++|+|+++|++|.|.++|.+ ++.....++.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e~~~~~~~~~i~~~~-------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--EIVFKHHKNYTQLFF-------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--CCCCSSCSSEEEEEC--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--ccccccchhEEEEEe--------------
Confidence 7899999999999999999999999999999999999999999999865 222222344555553
Q ss_pred hcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHH
Q 001041 481 AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKV 560 (1178)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~ 560 (1178)
| |||+||++|||||..+|++++|||||+. .
T Consensus 224 ------------------------------g-------------gg~~~r~~la~aL~~~p~ilildE~~~~-------e 253 (330)
T 2pt7_A 224 ------------------------------G-------------GNITSADCLKSCLRMRPDRIILGELRSS-------E 253 (330)
T ss_dssp ------------------------------B-------------TTBCHHHHHHHHTTSCCSEEEECCCCST-------H
T ss_pred ------------------------------C-------------CChhHHHHHHHHhhhCCCEEEEcCCChH-------H
Confidence 0 8999999999999999999999999982 2
Q ss_pred HHHHHHHHhcCC-eEEEEecCcchhhccCEEEEEeCCE
Q 001041 561 VQEALDRIMVNR-TTVIVAHRLSTVRNADMIAVIHRGK 597 (1178)
Q Consensus 561 i~~~i~~~~~~~-t~i~itH~~~~~~~~d~i~~l~~G~ 597 (1178)
+.+.++.+..++ |+|+++|+.+....|||+++|++|+
T Consensus 254 ~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 254 AYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSN 291 (330)
T ss_dssp HHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCC
Confidence 445666655555 7999999999878899999998875
No 101
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.85 E-value=2e-21 Score=211.12 Aligned_cols=120 Identities=17% Similarity=0.228 Sum_probs=107.3
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
|+++||+++ ++|+|+||+|++||.+||+||||||||||+++|.|+++|+ |+|.+||.++.+.+...+|++|+
T Consensus 5 l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~ 76 (249)
T 2qi9_C 5 MQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRA 76 (249)
T ss_dssp EEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEE
T ss_pred EEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEE
Confidence 899999986 3999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred ccccccccccc-cHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhccc
Q 001041 1123 LVSQEPVLFND-TIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQ 1170 (1178)
Q Consensus 1123 iV~Qdp~LF~g-TIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~ 1170 (1178)
+|||++.+|.+ |++||+.++.....+++++.++++..++.++..+.|.
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 125 (249)
T 2qi9_C 77 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTN 125 (249)
T ss_dssp EECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGG
T ss_pred EECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChh
Confidence 99999998865 9999999874222247889999999999887665443
No 102
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.84 E-value=1.1e-21 Score=216.87 Aligned_cols=125 Identities=18% Similarity=0.281 Sum_probs=105.5
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccC--CCChHHHHH
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ--KLQLKWLRQ 1119 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~--~i~l~~LR~ 1119 (1178)
-|+++||+++|++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.|+. +.+...+|+
T Consensus 21 ~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 21 LIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred eEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 4999999999963 46999999999999999999999999999999999999999999999999998 788888999
Q ss_pred hcccccccccc-ccc--cHHHHHhcCCCC------CCC---HHHHHHHHHHcCchHHHhhcc
Q 001041 1120 QMGLVSQEPVL-FND--TIRANIAYGKGG------DAT---EAEIQAASEMANAHKFICSLQ 1169 (1178)
Q Consensus 1120 ~IsiV~Qdp~L-F~g--TIreNI~~g~~~------~as---deei~~Al~~A~~~dfI~~LP 1169 (1178)
+|++|||++.+ |.. |++|||.++... ... .+++.++++..++.++..+.|
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 159 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYI 159 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCCh
Confidence 99999999975 555 999999986311 112 345788899998877655444
No 103
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.84 E-value=9.2e-22 Score=208.51 Aligned_cols=114 Identities=21% Similarity=0.412 Sum_probs=100.7
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhc
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1178)
.|+++||+++|+ + ++|+||||+|++||.+||+||+|||||||+++|+|+++|++|+|.+||.++. .+|++|
T Consensus 10 ~l~~~~ls~~y~---~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i 80 (214)
T 1sgw_A 10 KLEIRDLSVGYD---K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI 80 (214)
T ss_dssp EEEEEEEEEESS---S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred eEEEEEEEEEeC---C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcE
Confidence 599999999995 3 5999999999999999999999999999999999999999999999999986 368899
Q ss_pred cccccccccccc-cHHHHHhcCCC--C-CCCHHHHHHHHHHcCchHH
Q 001041 1122 GLVSQEPVLFND-TIRANIAYGKG--G-DATEAEIQAASEMANAHKF 1164 (1178)
Q Consensus 1122 siV~Qdp~LF~g-TIreNI~~g~~--~-~asdeei~~Al~~A~~~df 1164 (1178)
++|||+|.+|.+ |++|||.++.. . ...++++.++++..++.++
T Consensus 81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~ 127 (214)
T 1sgw_A 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL 127 (214)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC
Confidence 999999999987 99999987521 1 2236788999999988665
No 104
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.84 E-value=2.5e-21 Score=212.36 Aligned_cols=125 Identities=14% Similarity=0.256 Sum_probs=105.0
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCCh-HHHHHh
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL-KWLRQQ 1120 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l-~~LR~~ 1120 (1178)
-|+++||+++|++ .++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+.+. +.+|++
T Consensus 7 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 7 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEeeeEEEECC---EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 3899999999953 469999999999999999999999999999999999999999999999999988765 346788
Q ss_pred cccccccccccc-ccHHHHHhcCCCC---C-----------CC----HHHHHHHHHHcCchHHHhhcc
Q 001041 1121 MGLVSQEPVLFN-DTIRANIAYGKGG---D-----------AT----EAEIQAASEMANAHKFICSLQ 1169 (1178)
Q Consensus 1121 IsiV~Qdp~LF~-gTIreNI~~g~~~---~-----------as----deei~~Al~~A~~~dfI~~LP 1169 (1178)
|++|||++.+|. .|++||+.++... . .+ .+++.++++..++.++..+.|
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 151 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 151 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCc
Confidence 999999999886 6999999986321 1 11 245778888888877655444
No 105
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.84 E-value=2.8e-21 Score=212.29 Aligned_cols=125 Identities=21% Similarity=0.317 Sum_probs=105.6
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccC----------CC
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ----------KL 1112 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~----------~i 1112 (1178)
|+++||+++|. +.++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+. ++
T Consensus 7 l~i~~l~~~y~---~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 83 (262)
T 1b0u_A 7 LHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 83 (262)
T ss_dssp EEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred EEEeeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccccccc
Confidence 89999999995 246999999999999999999999999999999999999999999999999986 24
Q ss_pred Ch---HHHHHhccccccccccccc-cHHHHHhcCC--CCCCC----HHHHHHHHHHcCchHH-Hhhccc
Q 001041 1113 QL---KWLRQQMGLVSQEPVLFND-TIRANIAYGK--GGDAT----EAEIQAASEMANAHKF-ICSLQQ 1170 (1178)
Q Consensus 1113 ~l---~~LR~~IsiV~Qdp~LF~g-TIreNI~~g~--~~~as----deei~~Al~~A~~~df-I~~LP~ 1170 (1178)
+. ..+|++|++|||++.+|.. |++|||.++. ....+ ++++.++++..++.++ ..+.|.
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~ 152 (262)
T 1b0u_A 84 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPV 152 (262)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGG
T ss_pred ChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcc
Confidence 43 4578899999999999977 9999998742 11112 3567889999999888 655444
No 106
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.84 E-value=1.7e-21 Score=220.63 Aligned_cols=128 Identities=30% Similarity=0.511 Sum_probs=107.7
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCC--CChHHHHH
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK--LQLKWLRQ 1119 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~--i~l~~LR~ 1119 (1178)
.|+++||+++|. +.++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+ ......|+
T Consensus 4 ~l~i~~ls~~y~---~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQ---NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 389999999995 3469999999999999999999999999999999999999999999999999933 23345578
Q ss_pred hcccccccccccc-ccHHHHHhcCCCC-C----CCHHHHHHHHHHcCchHHHhhccccc
Q 001041 1120 QMGLVSQEPVLFN-DTIRANIAYGKGG-D----ATEAEIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1120 ~IsiV~Qdp~LF~-gTIreNI~~g~~~-~----asdeei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
+|++|||++.||. -|++|||.|+... . ..++++.++++..++.++..+.|..|
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~L 139 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHEL 139 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGS
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhC
Confidence 9999999999996 5999999997421 1 12356888999999988877666543
No 107
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.83 E-value=2.1e-21 Score=221.32 Aligned_cols=126 Identities=21% Similarity=0.405 Sum_probs=108.4
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhc
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1178)
.|+++||+++|+ +.++|+||||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.|+.+.+.. +++|
T Consensus 3 ~l~~~~l~~~yg---~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~i 77 (381)
T 3rlf_A 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGV 77 (381)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCE
T ss_pred EEEEEeEEEEEC---CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCE
Confidence 389999999995 34699999999999999999999999999999999999999999999999999988876 4789
Q ss_pred cccccccccccc-cHHHHHhcCCC-CCCC----HHHHHHHHHHcCchHHHhhccccc
Q 001041 1122 GLVSQEPVLFND-TIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1122 siV~Qdp~LF~g-TIreNI~~g~~-~~as----deei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
++|+|++.||.. |++|||.|+.. ...+ ++++.++++..++.++..+.|..|
T Consensus 78 g~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~L 134 (381)
T 3rlf_A 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKAL 134 (381)
T ss_dssp EEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGS
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHC
Confidence 999999999965 99999998621 0122 346788999999988877766544
No 108
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.83 E-value=4.2e-21 Score=218.60 Aligned_cols=125 Identities=30% Similarity=0.501 Sum_probs=107.1
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
|+++||+++|. +.++|+||||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.|+.+++.. +++|+
T Consensus 4 l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig 78 (362)
T 2it1_A 4 IKLENIVKKFG---NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNVG 78 (362)
T ss_dssp EEEEEEEEESS---SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEE
T ss_pred EEEEeEEEEEC---CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcEE
Confidence 89999999995 23699999999999999999999999999999999999999999999999999887764 57899
Q ss_pred ccccccccccc-cHHHHHhcCCC-CCCC----HHHHHHHHHHcCchHHHhhccccc
Q 001041 1123 LVSQEPVLFND-TIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1123 iV~Qdp~LF~g-TIreNI~~g~~-~~as----deei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
+|||++.||.. |++|||.|+.. ...+ ++++.++++..++.++..+.|..|
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~L 134 (362)
T 2it1_A 79 LVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQL 134 (362)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGS
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhC
Confidence 99999999975 99999998621 0112 356888999999988776666543
No 109
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.83 E-value=7e-23 Score=237.01 Aligned_cols=167 Identities=16% Similarity=0.178 Sum_probs=127.9
Q ss_pred CccccceeEEEeCCC--------------------EEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHH
Q 001041 399 EQIFSGFSISISSGT--------------------TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI 458 (1178)
Q Consensus 399 ~~~l~~i~l~i~~g~--------------------~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~ 458 (1178)
+.+|+++||++++|+ .++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t------- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT------- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------
Confidence 358999999999999 99999999999999999999999999999999997653
Q ss_pred hcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChH--HHHHHHHHHH
Q 001041 459 RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG--QKQRIAIARA 536 (1178)
Q Consensus 459 r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgG--qkqri~lARa 536 (1178)
| .++++|++...+.|++||+.++.+.. ++.+.++..++.+ .+..+ . |||| ||||++||||
T Consensus 109 ~--~~~v~q~~~~~~ltv~D~~g~~~~~~---~~~~~L~~~~L~~--------~~~~~----~-lS~G~~~kqrv~la~a 170 (413)
T 1tq4_A 109 M--ERHPYKHPNIPNVVFWDLPGIGSTNF---PPDTYLEKMKFYE--------YDFFI----I-ISATRFKKNDIDIAKA 170 (413)
T ss_dssp C--CCEEEECSSCTTEEEEECCCGGGSSC---CHHHHHHHTTGGG--------CSEEE----E-EESSCCCHHHHHHHHH
T ss_pred e--eEEeccccccCCeeehHhhcccchHH---HHHHHHHHcCCCc--------cCCeE----E-eCCCCccHHHHHHHHH
Confidence 1 28899998655789999987764322 2333344333211 12211 2 8999 9999999999
Q ss_pred hcc----------CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-----c-----CCeEEEEecCcch--hhc-cCEE
Q 001041 537 ILK----------DPRILLLDEATSALDAESEKVVQEALDRIM-----V-----NRTTVIVAHRLST--VRN-ADMI 590 (1178)
Q Consensus 537 l~~----------~~~illlDe~ts~lD~~~~~~i~~~i~~~~-----~-----~~t~i~itH~~~~--~~~-~d~i 590 (1178)
+.+ +|++++|||||++||+.+.+.+.+.++++. + .+++++.||.++. +.. +|+|
T Consensus 171 L~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 171 ISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 999 999999999999999999888888877652 1 2456677898775 443 6655
No 110
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.83 E-value=5.5e-21 Score=216.74 Aligned_cols=128 Identities=26% Similarity=0.464 Sum_probs=108.4
Q ss_pred ccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHh
Q 001041 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1178)
Q Consensus 1041 g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~ 1120 (1178)
..|+++||+++|++ +.++|+||||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.|+.+.+. .|++
T Consensus 13 ~~l~~~~l~~~y~g--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 88 (355)
T 1z47_A 13 MTIEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRN 88 (355)
T ss_dssp EEEEEEEEEECCTT--STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSS
T ss_pred ceEEEEEEEEEEcC--CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCc
Confidence 36999999999942 2359999999999999999999999999999999999999999999999999987664 4789
Q ss_pred ccccccccccccc-cHHHHHhcCCC-CCCC----HHHHHHHHHHcCchHHHhhccccc
Q 001041 1121 MGLVSQEPVLFND-TIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1121 IsiV~Qdp~LF~g-TIreNI~~g~~-~~as----deei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
|++|||++.||.. |++|||.|+.. ...+ ++++.++++..++.++..+.|..|
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~L 146 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHEL 146 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGS
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccC
Confidence 9999999999975 99999998521 0112 456889999999988877666543
No 111
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.83 E-value=4.4e-21 Score=218.20 Aligned_cols=125 Identities=23% Similarity=0.396 Sum_probs=108.1
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
|+++||+++|. +.++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+++.. |++|+
T Consensus 4 l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig 78 (359)
T 2yyz_A 4 IRVVNLKKYFG---KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREVG 78 (359)
T ss_dssp EEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEE
T ss_pred EEEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcEE
Confidence 89999999995 34699999999999999999999999999999999999999999999999999887764 67899
Q ss_pred ccccccccccc-cHHHHHhcCCCC-CCC----HHHHHHHHHHcCchHHHhhccccc
Q 001041 1123 LVSQEPVLFND-TIRANIAYGKGG-DAT----EAEIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1123 iV~Qdp~LF~g-TIreNI~~g~~~-~as----deei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
+|||++.||.. |++|||.|+... ..+ ++++.++++..++.++..+.|..|
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~L 134 (359)
T 2yyz_A 79 MVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQL 134 (359)
T ss_dssp EECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGS
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhC
Confidence 99999999965 999999997321 122 346889999999988877666543
No 112
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.82 E-value=9.4e-21 Score=216.52 Aligned_cols=125 Identities=22% Similarity=0.409 Sum_probs=102.1
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhc
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1178)
.|+++||+++|. +.++|+||||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.|+.+++.. +++|
T Consensus 11 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 85 (372)
T 1v43_A 11 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 85 (372)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEEC---CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcE
Confidence 399999999995 34699999999999999999999999999999999999999999999999999887764 6789
Q ss_pred cccccccccccc-cHHHHHhcCCCC-CCC----HHHHHHHHHHcCchHHHhhcccc
Q 001041 1122 GLVSQEPVLFND-TIRANIAYGKGG-DAT----EAEIQAASEMANAHKFICSLQQV 1171 (1178)
Q Consensus 1122 siV~Qdp~LF~g-TIreNI~~g~~~-~as----deei~~Al~~A~~~dfI~~LP~g 1171 (1178)
++|||++.||.. |++|||.|+... ..+ ++++.++++..++.++..+.|..
T Consensus 86 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~ 141 (372)
T 1v43_A 86 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQ 141 (372)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTT
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhh
Confidence 999999999965 999999997421 122 24678899999998887665543
No 113
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.82 E-value=6.3e-21 Score=216.22 Aligned_cols=124 Identities=23% Similarity=0.430 Sum_probs=107.1
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
|+++||+++|+ +. +|+||||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.|+.+++. .|++|+
T Consensus 2 l~~~~l~~~y~---~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig 75 (348)
T 3d31_A 2 IEIESLSRKWK---NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIA 75 (348)
T ss_dssp EEEEEEEEECS---SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCE
T ss_pred EEEEEEEEEEC---CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEE
Confidence 78999999995 34 9999999999999999999999999999999999999999999999999987554 578999
Q ss_pred ccccccccccc-cHHHHHhcCCC--CCCCHHHHHHHHHHcCchHHHhhccccc
Q 001041 1123 LVSQEPVLFND-TIRANIAYGKG--GDATEAEIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1123 iV~Qdp~LF~g-TIreNI~~g~~--~~asdeei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
+|||++.||.. |++|||.|+.. ....++++.++++..++.++..+.|..|
T Consensus 76 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~L 128 (348)
T 3d31_A 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTL 128 (348)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGS
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhC
Confidence 99999999976 99999998621 0112378999999999988877666543
No 114
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.82 E-value=1.4e-22 Score=225.02 Aligned_cols=158 Identities=15% Similarity=0.231 Sum_probs=128.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccCccccEEEeeeEEeCCC
Q 001041 975 GKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPS 1054 (1178)
Q Consensus 975 g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~ 1054 (1178)
+..+.+...+|+.+... ..++..+..+...++++..+.+|+.++++.+++..... . ..++..+.|+|+||+|+|+
T Consensus 38 ~~~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~--~-~~~~~~~~i~~~~vs~~y~- 112 (305)
T 2v9p_A 38 AAGSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGE--G-SWKSILTFFNYQNIELITF- 112 (305)
T ss_dssp TTTTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSS--C-CTHHHHHHHHHTTCCHHHH-
T ss_pred hcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC--C-cccccCCeEEEEEEEEEcC-
Confidence 34556677777766555 57899999999999999999999999998654432111 1 1112245699999999995
Q ss_pred CCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcccccccccccccc
Q 001041 1055 RPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDT 1134 (1178)
Q Consensus 1055 ~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gT 1134 (1178)
.++|+|+||+|++|+++|||||||||||||+++|+|+| +|+| +++|+|+|.||++|
T Consensus 113 ---~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~~t 168 (305)
T 2v9p_A 113 ---INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWLAS 168 (305)
T ss_dssp ---HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGGGG
T ss_pred ---hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCcccccccc
Confidence 36999999999999999999999999999999999999 8999 46899999999999
Q ss_pred HHH-HHhcCCCCCCCHHHHHHHHHHcCchHHHhh-cccccc
Q 001041 1135 IRA-NIAYGKGGDATEAEIQAASEMANAHKFICS-LQQVRT 1173 (1178)
Q Consensus 1135 Ire-NI~~g~~~~asdeei~~Al~~A~~~dfI~~-LP~gld 1173 (1178)
+++ ||.|++ ++++ +++++|+. ||+|+|
T Consensus 169 i~~~ni~~~~--~~~~----------~~~~~i~~~L~~gld 197 (305)
T 2v9p_A 169 LADTRAALVD--DATH----------ACWRYFDTYLRNALD 197 (305)
T ss_dssp GTTCSCEEEE--EECH----------HHHHHHHHTTTGGGG
T ss_pred HHHHhhccCc--cccH----------HHHHHHHHHhHccCC
Confidence 998 999973 4554 35678888 999987
No 115
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.82 E-value=1.4e-20 Score=208.98 Aligned_cols=116 Identities=22% Similarity=0.412 Sum_probs=93.1
Q ss_pred cccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHH
Q 001041 1040 KGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ 1119 (1178)
Q Consensus 1040 ~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~ 1119 (1178)
.+.|+++||+|+| .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||
T Consensus 38 ~~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g------------- 99 (290)
T 2bbs_A 38 DDSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99 (290)
T ss_dssp ------------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------
T ss_pred CceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------
Confidence 3569999999965 2499999999999999999999999999999999999999999999998
Q ss_pred hccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhccccccccc
Q 001041 1120 QMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1178)
Q Consensus 1120 ~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v 1176 (1178)
+|++|||+|.+|++|++|||. +. ...+..+.++++..++.+++..+|++++|.+
T Consensus 100 ~i~~v~Q~~~l~~~tv~enl~-~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 153 (290)
T 2bbs_A 100 RISFCSQNSWIMPGTIKENII-GV--SYDEYRYRSVIKACQLEEDISKFAEKDNIVL 153 (290)
T ss_dssp CEEEECSSCCCCSSBHHHHHH-TT--CCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC
T ss_pred EEEEEeCCCccCcccHHHHhh-Cc--ccchHHHHHHHHHhChHHHHHhccccccchh
Confidence 499999999999999999998 63 2345567778888999999999999988754
No 116
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.81 E-value=8.2e-21 Score=205.33 Aligned_cols=120 Identities=22% Similarity=0.398 Sum_probs=102.4
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
|+++||+++|+ + +|+||||+|++ |.+||+||||||||||+++|.|+++|++|+|.+||.|+.+.+ ..|++|+
T Consensus 2 l~~~~l~~~y~---~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~ 73 (240)
T 2onk_A 2 FLKVRAEKRLG---N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIG 73 (240)
T ss_dssp CEEEEEEEEET---T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCB
T ss_pred EEEEEEEEEeC---C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEE
Confidence 68999999994 2 59999999999 999999999999999999999999999999999999997643 3578999
Q ss_pred ccccccccccc-cHHHHHhcCCCC-C--CCHHHHHHHHHHcCchHHHhhccc
Q 001041 1123 LVSQEPVLFND-TIRANIAYGKGG-D--ATEAEIQAASEMANAHKFICSLQQ 1170 (1178)
Q Consensus 1123 iV~Qdp~LF~g-TIreNI~~g~~~-~--asdeei~~Al~~A~~~dfI~~LP~ 1170 (1178)
+|||++.+|.. |++||+.++... . ..++++.++++..++.++..+.|.
T Consensus 74 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 125 (240)
T 2onk_A 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPA 125 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGG
T ss_pred EEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChh
Confidence 99999999987 999999987321 0 124668889999998877655544
No 117
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.81 E-value=2.2e-22 Score=236.28 Aligned_cols=195 Identities=16% Similarity=0.154 Sum_probs=155.7
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCe---ecCCCC----
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGI---NLKEFQ---- 454 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~---~~~~~~---- 454 (1178)
..++++|+++.|+. +..+|+++ |++.+||+++|+||||||||||+++|.|+.+|+.|.|.++|. ++.++.
T Consensus 130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 45888999999963 34699999 999999999999999999999999999999999999999998 554321
Q ss_pred -HHHHhcceEEEcCC--CCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHHHH
Q 001041 455 -LQWIRKKIGLVSQE--PVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQR 530 (1178)
Q Consensus 455 -~~~~r~~i~~v~Q~--~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~-t~~~~~g~~lSgGqkqr 530 (1178)
...+++.++|++|+ |....-|+.+|+.+.. ++... .+.+ ..+-+...+||+|| ||
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a------e~~~~--------------~~~~v~~~ld~l~~lS~g~-qr 265 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRIA------EDFRD--------------RGQHVLLIMDSLTRYAMAQ-RE 265 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHH------HHHHT--------------TTCEEEEEEECHHHHHHHH-HH
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHHHH------HHHHh--------------CCCCHHHHHHhHHHHHHHH-HH
Confidence 34577889999995 3344678999988631 11110 0111 01112356799999 99
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc-----CC-----eEEEEecCcchhhccCEEEEEeCCEEEE
Q 001041 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-----NR-----TTVIVAHRLSTVRNADMIAVIHRGKIVE 600 (1178)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-----~~-----t~i~itH~~~~~~~~d~i~~l~~G~i~~ 600 (1178)
++|| +.+|++ |+++|+.+...+.+.++++.+ ++ |++++||+++ ...||++++|.+|+|+.
T Consensus 266 vslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl 335 (438)
T 2dpy_A 266 IALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVL 335 (438)
T ss_dssp HHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEE
T ss_pred HHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEE
Confidence 9999 788888 999999999999999987754 43 8999999999 67799999999999999
Q ss_pred ecChhHHhcC
Q 001041 601 KGTHSKLVED 610 (1178)
Q Consensus 601 ~g~~~~l~~~ 610 (1178)
.|++.++...
T Consensus 336 ~~~~~~~~~~ 345 (438)
T 2dpy_A 336 SRRLAEAGHY 345 (438)
T ss_dssp CHHHHHTTCS
T ss_pred eCCHHHccCC
Confidence 9999887653
No 118
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.81 E-value=7e-21 Score=216.87 Aligned_cols=127 Identities=19% Similarity=0.350 Sum_probs=107.4
Q ss_pred EEEeeeEEeCCCCCCcc--ccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC---hHHH
Q 001041 1043 IELHHVSFKYPSRPDVQ--VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ---LKWL 1117 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~--vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~---l~~L 1117 (1178)
|+++||+++|. +.+ +|+||||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.|+.+.+ ....
T Consensus 4 l~i~~l~~~y~---~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~ 80 (353)
T 1oxx_K 4 IIVKNVSKVFK---KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80 (353)
T ss_dssp EEEEEEEEEEG---GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGG
T ss_pred EEEEeEEEEEC---CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChh
Confidence 89999999995 346 999999999999999999999999999999999999999999999999997621 3345
Q ss_pred HHhccccccccccccc-cHHHHHhcCCCC-CCC----HHHHHHHHHHcCchHHHhhccccc
Q 001041 1118 RQQMGLVSQEPVLFND-TIRANIAYGKGG-DAT----EAEIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1118 R~~IsiV~Qdp~LF~g-TIreNI~~g~~~-~as----deei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
|++|++|||++.||.. |++|||.|+... ..+ ++++.++++..++.++..+.|..|
T Consensus 81 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~L 141 (353)
T 1oxx_K 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPREL 141 (353)
T ss_dssp GSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGS
T ss_pred hCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhC
Confidence 7899999999999976 999999987321 122 356888999999988877666543
No 119
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.81 E-value=8.5e-21 Score=207.23 Aligned_cols=122 Identities=25% Similarity=0.361 Sum_probs=100.8
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcc--cCCCCCeEEECCcccCCCChHHH-HH
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRF--YDPDAGHITLDGVEIQKLQLKWL-RQ 1119 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~--y~p~~G~I~IDG~dI~~i~l~~L-R~ 1119 (1178)
|+++||+|+|++ .++|+||||+|++||.+||+||||||||||+++|.|+ ++|++|+|.+||.|+.+.+.... |+
T Consensus 4 l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (250)
T 2d2e_A 4 LEIRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARK 80 (250)
T ss_dssp EEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHT
T ss_pred EEEEeEEEEECC---EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 899999999953 4699999999999999999999999999999999999 89999999999999998887766 44
Q ss_pred hccccccccccccc-cHHHHHhcCCC---C-CCC----HHHHHHHHHHcCc-hHHHhh
Q 001041 1120 QMGLVSQEPVLFND-TIRANIAYGKG---G-DAT----EAEIQAASEMANA-HKFICS 1167 (1178)
Q Consensus 1120 ~IsiV~Qdp~LF~g-TIreNI~~g~~---~-~as----deei~~Al~~A~~-~dfI~~ 1167 (1178)
.+++|||+|.+|.+ |++||+.++.. . ... ++++.++++..++ .++..+
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 138 (250)
T 2d2e_A 81 GLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSR 138 (250)
T ss_dssp TBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGS
T ss_pred cEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcC
Confidence 69999999999976 99999986420 0 111 3457778888887 355443
No 120
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.81 E-value=1.6e-20 Score=215.09 Aligned_cols=125 Identities=20% Similarity=0.385 Sum_probs=105.8
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCC------CChH
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK------LQLK 1115 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~------i~l~ 1115 (1178)
.|+++||+++|. +.++|+||||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.|+.+ ++..
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~ 79 (372)
T 1g29_1 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (372)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred EEEEEeEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHh
Confidence 389999999995 3469999999999999999999999999999999999999999999999999976 5543
Q ss_pred HHHHhcccccccccccc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCchHHHhhcccc
Q 001041 1116 WLRQQMGLVSQEPVLFN-DTIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICSLQQV 1171 (1178)
Q Consensus 1116 ~LR~~IsiV~Qdp~LF~-gTIreNI~~g~~-~~as----deei~~Al~~A~~~dfI~~LP~g 1171 (1178)
|++|++|||++.||. -|++|||.|+.. ...+ ++++.++++..++.++..+.|..
T Consensus 80 --~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~ 139 (372)
T 1g29_1 80 --DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRE 139 (372)
T ss_dssp --GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGG
T ss_pred --HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCccc
Confidence 678999999999995 599999998621 0122 34678899999998877665544
No 121
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.79 E-value=2.7e-19 Score=204.04 Aligned_cols=81 Identities=19% Similarity=0.250 Sum_probs=74.9
Q ss_pred CCChHHHHHHHHHHHhc---------cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEE
Q 001041 522 QLSGGQKQRIAIARAIL---------KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAV 592 (1178)
Q Consensus 522 ~lSgGqkqri~lARal~---------~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~ 592 (1178)
.||||||||++|||+|. .+|+|||||||||+||+...+.+.+.+.++. .|+|++|| .+. .||++++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~ 339 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLR 339 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEE
Confidence 59999999999999999 8999999999999999999999999998763 79999999 444 8999999
Q ss_pred EeCCEEEEecChhHH
Q 001041 593 IHRGKIVEKGTHSKL 607 (1178)
Q Consensus 593 l~~G~i~~~g~~~~l 607 (1178)
|++|++++.|+++++
T Consensus 340 l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 340 AQAGRFTPVADEEMQ 354 (359)
T ss_dssp EETTEEEECCCTTTS
T ss_pred EECCEEEecCCHHHH
Confidence 999999999999887
No 122
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.79 E-value=2.9e-20 Score=203.50 Aligned_cols=121 Identities=17% Similarity=0.302 Sum_probs=102.7
Q ss_pred EEEeeeEEeCCCC-CCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhc
Q 001041 1043 IELHHVSFKYPSR-PDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~-~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1178)
|+++||+++|+++ ...++|+|+||+|+ ||++||+||||||||||+++|+|++ |++|+|.+||.|+.+. .. |++|
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999531 01469999999999 9999999999999999999999999 9999999999999765 34 8899
Q ss_pred c-ccccccccccccHHHHHhcCCC-CCCCHHHHHHHHHHcCch-HHHhhcc
Q 001041 1122 G-LVSQEPVLFNDTIRANIAYGKG-GDATEAEIQAASEMANAH-KFICSLQ 1169 (1178)
Q Consensus 1122 s-iV~Qdp~LF~gTIreNI~~g~~-~~asdeei~~Al~~A~~~-dfI~~LP 1169 (1178)
+ +|||+|.+ +.|++|||.++.. ....++++.++++..++. ++..+-|
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 126 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKL 126 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBG
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCCh
Confidence 9 99999999 9999999987521 134578899999999987 6655444
No 123
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.78 E-value=5.8e-23 Score=236.81 Aligned_cols=205 Identities=15% Similarity=0.039 Sum_probs=143.5
Q ss_pred HHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccCccccE
Q 001041 965 FYAGARLVED-GKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEI 1043 (1178)
Q Consensus 965 ~~~g~~l~~~-g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I 1043 (1178)
.+.|.+.... |.++.+.+..++.++.....+ .+....+.++.+..+.+|+..++ ++................+.+
T Consensus 52 ~~~G~~~~~~~~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl--~p~~~~~~~~~~ir~~~~~~i 127 (361)
T 2gza_A 52 ERASAWEYYAVPNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR--PPACEHGTISVTIRKPSFTRR 127 (361)
T ss_dssp EETTEEEEEECTTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC--TTTBCTTCCEEEEECCCCCCC
T ss_pred EECCeEEEeCCCCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe--cCccCCCCeEEEEEecCCCCC
Confidence 3456666665 889999999998887765554 23333333333444556777766 322211100000001113445
Q ss_pred ---------EEeeeEEe---CCCCCCcccc---------ccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeE
Q 001041 1044 ---------ELHHVSFK---YPSRPDVQVF---------RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102 (1178)
Q Consensus 1044 ---------~f~nVsf~---Y~~~~~~~vL---------~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I 1102 (1178)
+|+||+|+ |++. +.++| +++||+|++|+.++||||||||||||+++|+|+++|++|.|
T Consensus 128 tl~~l~~~g~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I 206 (361)
T 2gza_A 128 TLEDYAQQGFFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLI 206 (361)
T ss_dssp CHHHHHHTTTTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEE
T ss_pred CHHHHHhcCCcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEE
Confidence 99999999 9632 23566 99999999999999999999999999999999999999999
Q ss_pred EECCcccCCCChHHHHHhccccc-ccccc---ccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1103 TLDGVEIQKLQLKWLRQQMGLVS-QEPVL---FNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1103 ~IDG~dI~~i~l~~LR~~IsiV~-Qdp~L---F~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
+|+|. +++.+..+|+++++|+ |++.+ +..|+++||+++.. ..+|..+..+++.+.+++++..+|.|++|.+.
T Consensus 207 ~ie~~--~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~-~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~ 282 (361)
T 2gza_A 207 TIEDV--PELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLR-MKPTRILLAELRGGEAYDFINVAASGHGGSIT 282 (361)
T ss_dssp EEESS--SCCCCTTCSSEEEEECC----------CCHHHHHHHHTT-SCCSEEEESCCCSTHHHHHHHHHHTTCCSCEE
T ss_pred EECCc--cccCccccCCEEEEeecCccccccccccCHHHHHHHHHh-cCCCEEEEcCchHHHHHHHHHHHhcCCCeEEE
Confidence 99985 5677767889999999 99987 89999999998743 44555566667778899999999999998653
No 124
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.78 E-value=7e-20 Score=201.70 Aligned_cols=118 Identities=18% Similarity=0.275 Sum_probs=98.8
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcc--cCCCCCeEEECCcccCCCChHHH-H
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRF--YDPDAGHITLDGVEIQKLQLKWL-R 1118 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~--y~p~~G~I~IDG~dI~~i~l~~L-R 1118 (1178)
-|+++||+++|. +.++|+||||+|++||.+||+||||||||||+++|+|+ ++|++|+|.+||.|+.+.+.... |
T Consensus 20 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 20 MLSIKDLHVSVE---DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 499999999995 34699999999999999999999999999999999999 67999999999999998887766 4
Q ss_pred Hhccccccccccccc-cHHHHHhcCC--------CCCCC----HHHHHHHHHHcCch
Q 001041 1119 QQMGLVSQEPVLFND-TIRANIAYGK--------GGDAT----EAEIQAASEMANAH 1162 (1178)
Q Consensus 1119 ~~IsiV~Qdp~LF~g-TIreNI~~g~--------~~~as----deei~~Al~~A~~~ 1162 (1178)
+.|++|||+|.+|.+ |+++|+.++. .+..+ ++++.++++..++.
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 153 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMP 153 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCC
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCC
Confidence 569999999999876 8999986531 01122 24577788888874
No 125
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.78 E-value=6.9e-21 Score=209.90 Aligned_cols=147 Identities=18% Similarity=0.168 Sum_probs=94.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCC-cccHHHHHhcCCCCCC---H
Q 001041 414 TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYGKDDAT---T 489 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~ni~~~~~~~~---~ 489 (1178)
.++|+||||||||||+++|+|...|++|+|.++|.++... ..++.++|++|++.++ .-||.||+.||..... .
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~---~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKT---VEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCC---CSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcc---eeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 5899999999999999999999999999999999877432 3356899999999877 4599999998864322 1
Q ss_pred HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh
Q 001041 490 EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM 569 (1178)
Q Consensus 490 ~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~ 569 (1178)
+.+..... .++.. ... ..||||||||+++|||+.. +++||||+++||+.... .++.+.
T Consensus 81 ~~i~~~~~----~~~~~-------~~~----~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~----~l~~L~ 138 (270)
T 3sop_A 81 EPIEKYIN----EQYEK-------FLK----EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLE----FMKHLS 138 (270)
T ss_dssp HHHHHHHH----HHHHH-------HHH----HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHH----HHHHHH
T ss_pred HHHHHHHH----HHHHh-------hhH----HhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHH----HHHHHH
Confidence 22322222 12211 112 2599999999999999875 99999999999997632 333333
Q ss_pred cCCeEEEEecCcchhh
Q 001041 570 VNRTTVIVAHRLSTVR 585 (1178)
Q Consensus 570 ~~~t~i~itH~~~~~~ 585 (1178)
+..++|+|.|+.+.+.
T Consensus 139 ~~~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 139 KVVNIIPVIAKADTMT 154 (270)
T ss_dssp TTSEEEEEETTGGGSC
T ss_pred hcCcEEEEEeccccCC
Confidence 3489999999987763
No 126
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.77 E-value=1.5e-21 Score=219.39 Aligned_cols=175 Identities=14% Similarity=0.214 Sum_probs=125.5
Q ss_pred CcccEEEEeEEEECCCCCCCccccceeEE-----------------------EeCCCEEEEEcCCCCcHHHHHHHHhccC
Q 001041 380 IRGDIELRDVYFSYPARPNEQIFSGFSIS-----------------------ISSGTTAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 380 ~~~~i~~~~~~~~y~~~~~~~~l~~i~l~-----------------------i~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
..+.|+++||++.|. |+++++++. +++|++++|+||||||||||+++|.|++
T Consensus 40 ~~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 40 LGEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp TTCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 355699999999993 577777765 8999999999999999999999999999
Q ss_pred CCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCC----CC-CCHHHHHHHHHHhcHHHHHHhCCCC
Q 001041 437 DPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGK----DD-ATTEEIRVATELANAAKFIDKLPQG 511 (1178)
Q Consensus 437 ~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~----~~-~~~~~~~~~~~~~~~~~~i~~~~~g 511 (1178)
+|..|. .++++|+|++.++..|++||+.+.. +. .+.+.+ .+.++.+..|
T Consensus 115 ~~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~---------~~~L~~l~~~ 168 (312)
T 3aez_A 115 ARWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRAL---------MRFVTSVKSG 168 (312)
T ss_dssp HTSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHH---------HHHHHHHHTT
T ss_pred cccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHH---------HHHHHHhCCC
Confidence 997664 3799999999999889999997532 11 111222 2333333334
Q ss_pred cc-chhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhh--ccC
Q 001041 512 ID-TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR--NAD 588 (1178)
Q Consensus 512 ~~-t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~--~~d 588 (1178)
.. ..+ ..|||||+||+++|||++.+|+|+|||||++.+|+... .+.+.+ ..+|+|+|..+... ..+
T Consensus 169 ~~~~~~----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~~-----~l~~~~--D~~I~V~a~~~~~~~R~i~ 237 (312)
T 3aez_A 169 SDYACA----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPTL-----MVSDLF--DFSLYVDARIEDIEQWYVS 237 (312)
T ss_dssp CSCEEE----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSSC-----CGGGGC--SEEEEEEECHHHHHHHHHH
T ss_pred cccCCc----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcchH-----HHHHhc--CcEEEEECCHHHHHHHHHH
Confidence 32 322 47999999999999999999999999999999986321 122222 23466666665432 244
Q ss_pred EEEEEeCC
Q 001041 589 MIAVIHRG 596 (1178)
Q Consensus 589 ~i~~l~~G 596 (1178)
|.+.+.+|
T Consensus 238 R~~~~rd~ 245 (312)
T 3aez_A 238 RFLAMRTT 245 (312)
T ss_dssp HHHHHTTT
T ss_pred HHHHHHhc
Confidence 54444443
No 127
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.77 E-value=1.2e-19 Score=197.88 Aligned_cols=113 Identities=22% Similarity=0.339 Sum_probs=95.7
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
|+++||+++|+. +.++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|. +|++|+
T Consensus 5 l~i~~l~~~y~~--~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i~ 69 (253)
T 2nq2_C 5 LSVENLGFYYQA--ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSIG 69 (253)
T ss_dssp EEEEEEEEEETT--TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCEE
T ss_pred EEEeeEEEEeCC--CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccEE
Confidence 899999999961 23699999999999999999999999999999999999999999998 367899
Q ss_pred ccccccccc-cccHHHHHhcCCCC---------CCCHHHHHHHHHHcCchHHHhhccc
Q 001041 1123 LVSQEPVLF-NDTIRANIAYGKGG---------DATEAEIQAASEMANAHKFICSLQQ 1170 (1178)
Q Consensus 1123 iV~Qdp~LF-~gTIreNI~~g~~~---------~asdeei~~Al~~A~~~dfI~~LP~ 1170 (1178)
+|||+|.+| +.|++|||.++... ...++++.++++..++.++..+.|.
T Consensus 70 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 127 (253)
T 2nq2_C 70 FVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFT 127 (253)
T ss_dssp EECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGG
T ss_pred EEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChh
Confidence 999999887 67999999986310 1123568899999999887665443
No 128
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.77 E-value=2e-20 Score=209.36 Aligned_cols=174 Identities=17% Similarity=0.230 Sum_probs=123.5
Q ss_pred cceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCC----HHHH--hcceEEEcCCCC-CC-cc
Q 001041 403 SGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ----LQWI--RKKIGLVSQEPV-LF-TG 474 (1178)
Q Consensus 403 ~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~----~~~~--r~~i~~v~Q~~~-l~-~~ 474 (1178)
..+||++++|++++|+|||||||||+++.|+|++.|++|+|.++|.|+.... +..+ |..++|++|++. ++ ..
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~ 170 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 170 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHH
Confidence 4578889999999999999999999999999999999999999999886653 2233 457999999997 66 56
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCC--EEEEeCCCCC
Q 001041 475 SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR--ILLLDEATSA 552 (1178)
Q Consensus 475 ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~--illlDe~ts~ 552 (1178)
|++||+.++.....+ .. .++. .|...........|| |||++||||+..+|+ +|+|| ||++
T Consensus 171 ~v~e~l~~~~~~~~d---------~~---lldt--~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsg 232 (302)
T 3b9q_A 171 VLSKAVKRGKEEGYD---------VV---LCDT--SGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTG 232 (302)
T ss_dssp HHHHHHHHHHHTTCS---------EE---EECC--CCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGG
T ss_pred HHHHHHHHHHHcCCc---------ch---HHhc--CCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCC
Confidence 899999864210000 00 0111 122111111122478 999999999999999 99999 9999
Q ss_pred CCHHhHHHHHHHHHHHhcCCeEEEEec---------Ccchhh-ccCEEEEEeCCEE
Q 001041 553 LDAESEKVVQEALDRIMVNRTTVIVAH---------RLSTVR-NADMIAVIHRGKI 598 (1178)
Q Consensus 553 lD~~~~~~i~~~i~~~~~~~t~i~itH---------~~~~~~-~~d~i~~l~~G~i 598 (1178)
+|+.... +.+.+ ..+.|+|++|| .++... ..+.|..+..|+.
T Consensus 233 lD~~~~~---~~~~~-~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 233 LNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp GGGHHHH---HHHHH-HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred cCHHHHH---HHHHH-hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 9998542 12222 13789999999 233333 3678999998864
No 129
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.75 E-value=1.2e-20 Score=200.89 Aligned_cols=168 Identities=16% Similarity=0.133 Sum_probs=106.2
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCc-ccHH
Q 001041 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT-GSIK 477 (1178)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-~ti~ 477 (1178)
.++++| .++++||+++|+||||||||||+++|.|+++ .|.+++.....-.....+..++|++|++.+|. .|++
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST----TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC----ceEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 468888 7999999999999999999999999999985 34554322111111123567999999997764 4666
Q ss_pred HHHhcCC---C-----CCCHHHHHHH----------HHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 478 DNIAYGK---D-----DATTEEIRVA----------TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 478 ~ni~~~~---~-----~~~~~~~~~~----------~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
+|+.... . ....++..+. ++..++.+.....| ..|| |++.
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~lS-----------~l~~ 140 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP-----------EAVT-----------VFLA 140 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----------TSEE-----------EEEE
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----------CcEE-----------EEEE
Confidence 6663210 0 0112222222 12223322222222 2344 8999
Q ss_pred CCCEEEEeCCCCCC----CHHhHHHHHHHHHHHh--cCCeEEEEecCcchhhc-cCEEEEEe
Q 001041 540 DPRILLLDEATSAL----DAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIH 594 (1178)
Q Consensus 540 ~~~illlDe~ts~l----D~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~ 594 (1178)
+|++++|||||+++ |+...+.+.+.++++. .+.|+|+|||+++.+.. ||+|++|.
T Consensus 141 ~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 141 PPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp CSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 99999999999998 6667888888887764 37899999999998865 99999984
No 130
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.74 E-value=1e-20 Score=192.99 Aligned_cols=111 Identities=20% Similarity=0.212 Sum_probs=87.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccCCCC---CCcEEECCeecCCCC---HHHHh-cceE----EEcCCCCCCcccHHHHHh
Q 001041 413 TTAALVGQSGSGKSTVISLIERFYDPQ---AGEVLIDGINLKEFQ---LQWIR-KKIG----LVSQEPVLFTGSIKDNIA 481 (1178)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g~~~~~---~G~i~i~g~~~~~~~---~~~~r-~~i~----~v~Q~~~l~~~ti~~ni~ 481 (1178)
++++|||+||||||||+++|+|+++|. .|.|.+||.++.+++ .+.+| ++++ +++|++++| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999998 899999999988776 66777 4788 899999887 111
Q ss_pred cCCCCCCHHHHHHHHHHhcHHHHHHh-CCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEE
Q 001041 482 YGKDDATTEEIRVATELANAAKFIDK-LPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRIL 544 (1178)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~il 544 (1178)
+ +++ . .+++++++.. +| |+||.++|+ |||||||||+||||++++|++.
T Consensus 77 -~----~~~-~-----~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 -V----SEE-E-----GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp -C----CHH-H-----HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred -C----Chh-h-----hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence 1 121 1 6788999999 99 999999995 9999999999999999998873
No 131
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.74 E-value=1.4e-19 Score=205.83 Aligned_cols=173 Identities=17% Similarity=0.223 Sum_probs=124.3
Q ss_pred ceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCC----HHHH--hcceEEEcCCCC-CC-ccc
Q 001041 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ----LQWI--RKKIGLVSQEPV-LF-TGS 475 (1178)
Q Consensus 404 ~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~----~~~~--r~~i~~v~Q~~~-l~-~~t 475 (1178)
.+||++++|++++|||||||||||+++.|.|++.|.+|+|.++|.|+.... +..+ |..|+|++|++. ++ ..|
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~t 228 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATV 228 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHH
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhh
Confidence 578889999999999999999999999999999999999999999886542 2222 457999999987 55 578
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCC--EEEEeCCCCCC
Q 001041 476 IKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR--ILLLDEATSAL 553 (1178)
Q Consensus 476 i~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~--illlDe~ts~l 553 (1178)
+++|+.++.....+ .. .++. .|...........|| |||++||||+..+|+ +|+|| ||+++
T Consensus 229 v~e~l~~~~~~~~d---------~~---lldt--~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttgl 290 (359)
T 2og2_A 229 LSKAVKRGKEEGYD---------VV---LCDT--SGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGL 290 (359)
T ss_dssp HHHHHHHHHHTTCS---------EE---EEEC--CCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGG
T ss_pred HHHHHHHHHhCCCH---------HH---HHHh--cCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCC
Confidence 99999864210000 00 0111 122111111122478 999999999999999 99999 99999
Q ss_pred CHHhHHHHHHHHHHHhcCCeEEEEecC---------cchhh-ccCEEEEEeCCEE
Q 001041 554 DAESEKVVQEALDRIMVNRTTVIVAHR---------LSTVR-NADMIAVIHRGKI 598 (1178)
Q Consensus 554 D~~~~~~i~~~i~~~~~~~t~i~itH~---------~~~~~-~~d~i~~l~~G~i 598 (1178)
|+..... .+.+ ..+.|+|++||- ++... ..+.|..+..|+.
T Consensus 291 D~~~~~~---~~~~-~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 291 NMLPQAR---EFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp GGHHHHH---HHHH-HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CHHHHHH---HHHH-hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 9986431 2222 137899999992 33333 3678999988863
No 132
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.72 E-value=7e-20 Score=190.41 Aligned_cols=159 Identities=17% Similarity=0.238 Sum_probs=118.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHH
Q 001041 412 GTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEE 491 (1178)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~ 491 (1178)
|++++|+||||||||||+++|+|+++ ++| |.++|.+..++. .++++++|++|+. .++ ++|+.-.....+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~~~~~~~~--- 69 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLSRVGLEPP--- 69 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEEECCCCCC---
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhhcccccCC---
Confidence 78999999999999999999999998 899 999998886544 4678999999986 332 223221000000
Q ss_pred HHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHH-HHHH---HhccCCCEEEEeC--CCCCCCHHhHHHHHHHH
Q 001041 492 IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI-AIAR---AILKDPRILLLDE--ATSALDAESEKVVQEAL 565 (1178)
Q Consensus 492 ~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri-~lAR---al~~~~~illlDe--~ts~lD~~~~~~i~~~i 565 (1178)
+...+..+|+.+..+|||||+++ +|+| |+..+|+++|||| |+...|....+.+.+.+
T Consensus 70 -----------------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l 132 (189)
T 2i3b_A 70 -----------------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTL 132 (189)
T ss_dssp -----------------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHH
T ss_pred -----------------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHH
Confidence 01123478888899999999998 5566 6899999999999 88888887766666665
Q ss_pred HHHhcCCeEEE--Ee--cCcchhhccCEEEEEeCCEEEEec
Q 001041 566 DRIMVNRTTVI--VA--HRLSTVRNADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 566 ~~~~~~~t~i~--it--H~~~~~~~~d~i~~l~~G~i~~~g 602 (1178)
.. .+++|+ ++ |+.+ ...+|+|..+++|+|++..
T Consensus 133 ~~---~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 133 ST---PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp HC---SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECC
T ss_pred hC---CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeC
Confidence 43 345554 34 9876 5567888888999998753
No 133
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.71 E-value=4.3e-19 Score=202.10 Aligned_cols=195 Identities=15% Similarity=0.198 Sum_probs=146.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCC-------CCH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE-------FQL 455 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~-------~~~ 455 (1178)
.++.+++++.|+. +..+|+++ |+|.+||+++|+||||||||||+++|.|+.+|+.|.|.+.|.+..+ ...
T Consensus 45 ~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 45 PLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp STTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred CeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence 4778899999963 34699999 9999999999999999999999999999999999999998865221 122
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccch-hcCCCCCCChHHHHHHHHH
Q 001041 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTL-VGEHGTQLSGGQKQRIAIA 534 (1178)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~-~~~~g~~lSgGqkqri~lA 534 (1178)
..+++.+.+++|.+. ...+++..+...+.+.+.... .|.+.. +-+...+||+|| ||+++|
T Consensus 122 ~~~~~~v~~~~~~~~----------------~~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~la 182 (347)
T 2obl_A 122 STLSKCVLVVTTSDR----------------PALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGLA 182 (347)
T ss_dssp HHHTTEEEEEECTTS----------------CHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHHH
T ss_pred hhhhceEEEEECCCC----------------CHHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHHH
Confidence 234455677766421 112344444444444444332 232211 113456799999 899999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc---CC-----eEEEEecCcchhhccCEEEEEeCCEEEEecChhH
Q 001041 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMV---NR-----TTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSK 606 (1178)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~---~~-----t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 606 (1178)
+.+|++ |+++|+.....+.+.+++..+ |. |++++||+++ -.-||++++|.+|+|+..|+.++
T Consensus 183 ---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~ 252 (347)
T 2obl_A 183 ---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAE 252 (347)
T ss_dssp ---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHT
T ss_pred ---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHH
Confidence 578877 999999999999999887652 56 8999999998 55699999999999999998887
Q ss_pred Hhc
Q 001041 607 LVE 609 (1178)
Q Consensus 607 l~~ 609 (1178)
+..
T Consensus 253 ~~~ 255 (347)
T 2obl_A 253 ENH 255 (347)
T ss_dssp TTC
T ss_pred cCC
Confidence 643
No 134
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.71 E-value=1.2e-18 Score=191.01 Aligned_cols=132 Identities=17% Similarity=0.182 Sum_probs=100.8
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC-CCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHH
Q 001041 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ-AGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKD 478 (1178)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~-~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ 478 (1178)
++|+++| +++|++++|+||||||||||+++|+|+++|. +|+|.++|.++ .|++|++.-+
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i------------~~~~~~~~~~------ 74 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPI------------EYVFKHKKSI------ 74 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSC------------CSCCCCSSSE------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcc------------eeecCCccee------
Confidence 4899999 8999999999999999999999999999997 99999998654 3444433110
Q ss_pred HHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhH
Q 001041 479 NIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558 (1178)
Q Consensus 479 ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~ 558 (1178)
.. . -+-|++ ..+| |++|||||..+|++++||||| |+++.
T Consensus 75 ---v~-q----------------------~~~gl~------~~~l------~~~la~aL~~~p~illlDEp~---D~~~~ 113 (261)
T 2eyu_A 75 ---VN-Q----------------------REVGED------TKSF------ADALRAALREDPDVIFVGEMR---DLETV 113 (261)
T ss_dssp ---EE-E----------------------EEBTTT------BSCH------HHHHHHHHHHCCSEEEESCCC---SHHHH
T ss_pred ---ee-H----------------------HHhCCC------HHHH------HHHHHHHHhhCCCEEEeCCCC---CHHHH
Confidence 00 0 011221 1222 899999999999999999999 98875
Q ss_pred HHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeC
Q 001041 559 KVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHR 595 (1178)
Q Consensus 559 ~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~ 595 (1178)
..+ ++....+.|+++++|+.+....+|++++|..
T Consensus 114 ~~~---l~~~~~g~~vl~t~H~~~~~~~~dri~~l~~ 147 (261)
T 2eyu_A 114 ETA---LRAAETGHLVFGTLHTNTAIDTIHRIVDIFP 147 (261)
T ss_dssp HHH---HHHHHTTCEEEEEECCSSHHHHHHHHHHTSC
T ss_pred HHH---HHHHccCCEEEEEeCcchHHHHHHHHhhhcC
Confidence 543 3333468999999999987777999888753
No 135
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.70 E-value=2.3e-17 Score=200.07 Aligned_cols=77 Identities=19% Similarity=0.329 Sum_probs=71.5
Q ss_pred CCC-ChHHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCE
Q 001041 521 TQL-SGGQKQRIAIARAILKDP--RILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGK 597 (1178)
Q Consensus 521 ~~l-SgGqkqri~lARal~~~~--~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~ 597 (1178)
..| |||||||++||||++.+| ++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+..||++++|++|.
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~~ 474 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQV 474 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECCE
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeccc
Confidence 456 999999999999999999 99999999999999999999999988877899999999999988899999996653
No 136
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.70 E-value=7.2e-17 Score=184.91 Aligned_cols=76 Identities=28% Similarity=0.387 Sum_probs=67.7
Q ss_pred CCCCCChHHHH------HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhccCEEE
Q 001041 519 HGTQLSGGQKQ------RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIA 591 (1178)
Q Consensus 519 ~g~~lSgGqkq------ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~ 591 (1178)
....||||||| |+++|||+..+|++|||||||++||+.....+.+.++++. +++|+|+|||+.+....||+|+
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~ 324 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVI 324 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEE
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEE
Confidence 34679999999 6788899999999999999999999999999999998764 4679999999988777899999
Q ss_pred EEe
Q 001041 592 VIH 594 (1178)
Q Consensus 592 ~l~ 594 (1178)
+|+
T Consensus 325 ~l~ 327 (339)
T 3qkt_A 325 RIS 327 (339)
T ss_dssp EEE
T ss_pred EEE
Confidence 985
No 137
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.70 E-value=2.5e-20 Score=215.23 Aligned_cols=175 Identities=15% Similarity=0.187 Sum_probs=142.0
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC-CCcEEECCeecCCCCHHHHhcceEEEcC-----CCCCCc
Q 001041 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ-AGEVLIDGINLKEFQLQWIRKKIGLVSQ-----EPVLFT 473 (1178)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~-~G~i~i~g~~~~~~~~~~~r~~i~~v~Q-----~~~l~~ 473 (1178)
++|++++ +++|++++|+||||||||||+++|+|+++|. +|+|.+.|.++. + .++..++||+| ++..|.
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~ 199 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA 199 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence 3566665 7899999999999999999999999999997 899977665543 2 35678999999 888999
Q ss_pred ccHHHHHhcCCCCC-------CHHHHHHHHHHhcH-----------------HHHH------------HhCCCCccchhc
Q 001041 474 GSIKDNIAYGKDDA-------TTEEIRVATELANA-----------------AKFI------------DKLPQGIDTLVG 517 (1178)
Q Consensus 474 ~ti~~ni~~~~~~~-------~~~~~~~~~~~~~~-----------------~~~i------------~~~~~g~~t~~~ 517 (1178)
+++++|+.. .|+. +.+.++.+++.++. +..+ ..+++++++.++
T Consensus 200 ~~l~~~L~~-~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~ 278 (372)
T 2ewv_A 200 DALRAALRE-DPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIIS 278 (372)
T ss_dssp HHHHHHTTS-CCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEE
T ss_pred HHHHHHhhh-CcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEE
Confidence 999999996 4654 66767666665431 1111 124668899999
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCE--EEEeCCCCCCCHH----h-----HHHHHHHHHHHhcCCeEEEEecCcch
Q 001041 518 EHGTQLSGGQKQRIAIARAILKDPRI--LLLDEATSALDAE----S-----EKVVQEALDRIMVNRTTVIVAHRLST 583 (1178)
Q Consensus 518 ~~g~~lSgGqkqri~lARal~~~~~i--lllDe~ts~lD~~----~-----~~~i~~~i~~~~~~~t~i~itH~~~~ 583 (1178)
+++..+||| ||+++||+++.+|+| +|+||+|+++|.. + +...+++++...+|+|.+.++||++.
T Consensus 279 qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 279 QRLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp EEEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred EEeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 999899999 899999999999999 9999999999965 2 23577888888889999999999874
No 138
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.69 E-value=2.4e-17 Score=185.68 Aligned_cols=181 Identities=13% Similarity=0.108 Sum_probs=119.2
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCC-cEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHH
Q 001041 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG-EVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKD 478 (1178)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G-~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ 478 (1178)
++|+++++.+++|++++|+||+|||||||++.|+|.+.|.+| .|.+.+.+ .+...++.++..+.|+..+ +..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhcc
Confidence 589999999999999999999999999999999999998877 77654432 3455666666555554322 2223
Q ss_pred HHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH-HHHHHHHHHhccCCCEEEEeCCCC---C--
Q 001041 479 NIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ-KQRIAIARAILKDPRILLLDEATS---A-- 552 (1178)
Q Consensus 479 ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGq-kqri~lARal~~~~~illlDe~ts---~-- 552 (1178)
++..+. .++++..+.. .+.+...+ + .+.+...++|.+| +||+. |+++..+|+++|+||||+ +
T Consensus 97 ~l~~~~--~~~~~~~~~~-----~~~l~~~~--l--~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~ 164 (296)
T 1cr0_A 97 SLKREI--IENGKFDQWF-----DELFGNDT--F--HLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASG 164 (296)
T ss_dssp HHHHHH--HHHTHHHHHH-----HHHHSSSC--E--EEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-------
T ss_pred ccccCC--CCHHHHHHHH-----HHHhccCC--E--EEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCC
Confidence 333211 1111221111 11222221 1 1333335689999 77777 999999999999999999 4
Q ss_pred -CCH-HhHHHHHHHHHHHhc--CCeEEEEecCc--c--------------------hhh-ccCEEEEEeCCEE
Q 001041 553 -LDA-ESEKVVQEALDRIMV--NRTTVIVAHRL--S--------------------TVR-NADMIAVIHRGKI 598 (1178)
Q Consensus 553 -lD~-~~~~~i~~~i~~~~~--~~t~i~itH~~--~--------------------~~~-~~d~i~~l~~G~i 598 (1178)
+|. .....+.+.++++.+ ++|+|+++|.. + .+. .||+|++|++|+.
T Consensus 165 ~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 165 ESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ----CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 444 444567777776643 78999999995 4 454 5999999998874
No 139
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.67 E-value=1.2e-18 Score=211.83 Aligned_cols=169 Identities=14% Similarity=0.134 Sum_probs=117.8
Q ss_pred CCccccceeE-EEeCCCEEEEEcCCCCcHHHHHHH--HhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcc
Q 001041 398 NEQIFSGFSI-SISSGTTAALVGQSGSGKSTVISL--IERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG 474 (1178)
Q Consensus 398 ~~~~l~~i~l-~i~~g~~~~ivG~~GsGKStl~~~--l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ 474 (1178)
+.++|+++++ .+++|++++|+||||||||||++. +.|+++|.+|.|+++|.+. .......+++++|++|++...
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~~~~-- 100 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKLVDE-- 100 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHHHHT--
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHhhcc--
Confidence 3579999999 999999999999999999999999 6799998999999999872 223344567899999987521
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCC--
Q 001041 475 SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA-- 552 (1178)
Q Consensus 475 ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~-- 552 (1178)
+|+.+...... ++.+++++..++.+..... ...|||| +|++++|||||+.
T Consensus 101 ---~~l~~~~~~~~-~~~~~~l~~~~l~~~~~~~-----------~~~LS~g-------------~~~~lilDe~t~~~~ 152 (525)
T 1tf7_A 101 ---GKLFILDASPD-PEGQEVVGGFDLSALIERI-----------NYAIQKY-------------RARRVSIDSVTSVFQ 152 (525)
T ss_dssp ---TSEEEEECCCC-SSCCSCCSSHHHHHHHHHH-----------HHHHHHH-------------TCSEEEEECSTTTST
T ss_pred ---CcEEEEecCcc-cchhhhhcccCHHHHHHHH-----------HHHHHHc-------------CCCEEEECCHHHHHH
Confidence 12211100000 0000111111222211111 1234555 4779999999985
Q ss_pred ---CCHHhHHHHHHHHHHHh-cCCeEEEEecCcchh---------hc-cCEEEEEeCCE
Q 001041 553 ---LDAESEKVVQEALDRIM-VNRTTVIVAHRLSTV---------RN-ADMIAVIHRGK 597 (1178)
Q Consensus 553 ---lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~---------~~-~d~i~~l~~G~ 597 (1178)
+|+...+.+.+.++.+. .++|+|++||+++.+ .. ||+|++|++|+
T Consensus 153 ~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~ 211 (525)
T 1tf7_A 153 QYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVL 211 (525)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEEC
T ss_pred hcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEc
Confidence 58888888888887664 489999999999874 44 99999999855
No 140
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.67 E-value=2e-17 Score=212.07 Aligned_cols=172 Identities=15% Similarity=0.153 Sum_probs=121.7
Q ss_pred ccEEEEe-----EEEECCCCCCCccccceeEEEeC-------CCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCee
Q 001041 382 GDIELRD-----VYFSYPARPNEQIFSGFSISISS-------GTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGIN 449 (1178)
Q Consensus 382 ~~i~~~~-----~~~~y~~~~~~~~l~~i~l~i~~-------g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~ 449 (1178)
+.|+++| +++.|+. +.++++|++|.+++ |++++|+||||||||||++.+ |++.+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~--~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~----------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFG--DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV----------- 814 (1022)
T ss_dssp CCEEEEEECCCC------C--CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-----------
T ss_pred ceEEEEeccccEEEEEecC--CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-----------
Confidence 4599999 9999842 35799999999987 999999999999999999999 98753
Q ss_pred cCCCCHHHHhcceE-EEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 001041 450 LKEFQLQWIRKKIG-LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1178)
Q Consensus 450 ~~~~~~~~~r~~i~-~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqk 528 (1178)
..++| ||||++. ..|+.|||.. . .++.+.+. .+-.++|++++
T Consensus 815 ---------~aqiG~~Vpq~~~--~l~v~d~I~~-r--------------ig~~d~~~-----------~~~stf~~em~ 857 (1022)
T 2o8b_B 815 ---------MAQMGCYVPAEVC--RLTPIDRVFT-R--------------LGASDRIM-----------SGESTFFVELS 857 (1022)
T ss_dssp ---------HHTTTCCEESSEE--EECCCSBEEE-E--------------CC--------------------CHHHHHHH
T ss_pred ---------HhheeEEeccCcC--CCCHHHHHHH-H--------------cCCHHHHh-----------hchhhhHHHHH
Confidence 23666 9999973 5567777642 1 11112111 11235677777
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhH-HHHHHHHHHHh-c-CCeEEEEecCcchhhc-cCEEEEEeCCEEE--Eec
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESE-KVVQEALDRIM-V-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIV--EKG 602 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~-~~i~~~i~~~~-~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~--~~g 602 (1178)
+ +++||++..+|+++|||||++++|+... ..+.+.++.+. + ++|+|++||.++.+.. +|++.++ +|++. +.|
T Consensus 858 ~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~ 935 (1022)
T 2o8b_B 858 E-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVEN 935 (1022)
T ss_dssp H-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC---
T ss_pred H-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEec
Confidence 5 9999999999999999999999999874 55667776664 3 7899999999998865 8998887 58887 555
Q ss_pred ChhH
Q 001041 603 THSK 606 (1178)
Q Consensus 603 ~~~~ 606 (1178)
++++
T Consensus 936 ~~~~ 939 (1022)
T 2o8b_B 936 ECED 939 (1022)
T ss_dssp ----
T ss_pred Cccc
Confidence 5443
No 141
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.67 E-value=1.1e-16 Score=194.45 Aligned_cols=152 Identities=16% Similarity=0.134 Sum_probs=116.9
Q ss_pred eEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHh-cCC
Q 001041 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIA-YGK 484 (1178)
Q Consensus 406 ~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~-~~~ 484 (1178)
+..+++|++++|+|++|||||||++.++|...+. |. +-+.+++|++ ..+++.|.. ++
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~~~~ee~---~~~l~~~~~~~g- 332 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAILFAYEES---RAQLLRNAYSWG- 332 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEEEESSSC---HHHHHHHHHTTS-
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEEEEEeCC---HHHHHHHHHHcC-
Confidence 3489999999999999999999999999998774 53 1256777876 235666653 22
Q ss_pred CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHH-----hHH
Q 001041 485 DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE-----SEK 559 (1178)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~-----~~~ 559 (1178)
.+.++ .. . .|+..........|||||+||+++||++..+|+++|+| ||++||.. ..+
T Consensus 333 --~~~~~------------~~-~--~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~ 394 (525)
T 1tf7_A 333 --MDFEE------------ME-R--QNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQ 394 (525)
T ss_dssp --CCHHH------------HH-H--TTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHH
T ss_pred --CCHHH------------HH-h--CCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHH
Confidence 12111 11 1 14444445556789999999999999999999999999 99999998 777
Q ss_pred HHHHHHHHHh-cCCeEEEEecCc----------chhhc-cCEEEEEeCCE
Q 001041 560 VVQEALDRIM-VNRTTVIVAHRL----------STVRN-ADMIAVIHRGK 597 (1178)
Q Consensus 560 ~i~~~i~~~~-~~~t~i~itH~~----------~~~~~-~d~i~~l~~G~ 597 (1178)
.+.+.++.+. .+.|+|+++|+. ..+.. ||+|++|++|+
T Consensus 395 ~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 395 FVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 7777776654 478999999998 66654 89999999887
No 142
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.64 E-value=4.1e-16 Score=154.68 Aligned_cols=81 Identities=26% Similarity=0.366 Sum_probs=71.2
Q ss_pred CCCCCCChHHHHHHHHH------HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhccCEE
Q 001041 518 EHGTQLSGGQKQRIAIA------RAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMI 590 (1178)
Q Consensus 518 ~~g~~lSgGqkqri~lA------Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i 590 (1178)
....+||||||||++|| ||++.+|+++||||||++||+.+.+.+.+.+.++. +++|+|+|||+......||++
T Consensus 53 ~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d~i 132 (148)
T 1f2t_B 53 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHV 132 (148)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEE
T ss_pred CChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCCEE
Confidence 45678999999999876 99999999999999999999999999999998864 478999999999766779999
Q ss_pred EEE--eCCEE
Q 001041 591 AVI--HRGKI 598 (1178)
Q Consensus 591 ~~l--~~G~i 598 (1178)
++| ++|..
T Consensus 133 i~l~~~~g~s 142 (148)
T 1f2t_B 133 IRISLENGSS 142 (148)
T ss_dssp EEEEEETTEE
T ss_pred EEEEcCCCeE
Confidence 999 45643
No 143
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.64 E-value=9.4e-18 Score=183.41 Aligned_cols=166 Identities=13% Similarity=0.149 Sum_probs=104.9
Q ss_pred CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHH
Q 001041 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIK 477 (1178)
Q Consensus 398 ~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~ 477 (1178)
+.++|+|+||++++|++++|+||+|||||||+++|.|++ |.+.++ ..+..++|++|++....-|+.
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHh
Confidence 457999999999999999999999999999999999976 666554 356789999999744456899
Q ss_pred HHHhcCCCC--------CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCC
Q 001041 478 DNIAYGKDD--------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEA 549 (1178)
Q Consensus 478 ~ni~~~~~~--------~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ 549 (1178)
+|+.+.... .+.+++.+ .++.+.++.+..+ ..||+||+||+++ +++..+|+++|||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~L~~l~~~~~~~~----~~ls~g~~~r~~~-~~~~~~~~~lilDg~ 142 (245)
T 2jeo_A 77 QKAKALKGQYNFDHPDAFDNDLMHR---------TLKNIVEGKTVEV----PTYDFVTHSRLPE-TTVVYPADVVLFEGI 142 (245)
T ss_dssp HHHHHHTTCCCTTSGGGBCHHHHHH---------HHHHHHTTCCEEE----CCEETTTTEECSS-CEEECCCSEEEEECT
T ss_pred HhhhhhccCCCCCCcccccHHHHHH---------HHHHHHCCCCeec----ccccccccCccCc-eEEecCCCEEEEeCc
Confidence 987653221 11122222 2222222333333 4799999999988 688899999999998
Q ss_pred CCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchh-hc-cCEEEEEeCCEEEEecChhHHh
Q 001041 550 TSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTV-RN-ADMIAVIHRGKIVEKGTHSKLV 608 (1178)
Q Consensus 550 ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~-~~-~d~i~~l~~G~i~~~g~~~~l~ 608 (1178)
....|.. +.+. .+.|++++||....+ +. ++++ ++|+ +++++.
T Consensus 143 ~~~~~~~--------l~~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~ 186 (245)
T 2jeo_A 143 LVFYSQE--------IRDM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQIL 186 (245)
T ss_dssp TTTTSHH--------HHTT-CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHH
T ss_pred cccccHH--------HHHh-cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHH
Confidence 8777754 2222 378999999974333 33 3333 5664 555554
No 144
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.64 E-value=1.8e-19 Score=190.08 Aligned_cols=158 Identities=18% Similarity=0.311 Sum_probs=120.2
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccCC-------------CCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccH
Q 001041 410 SSGTTAALVGQSGSGKSTVISLIERFYD-------------PQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSI 476 (1178)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~~-------------~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti 476 (1178)
++|++++|+||||||||||+++|+|+++ |..|+ ++|+++...+.+.+++.+ +|+++++.+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~~ 76 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAEF 76 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeeee
Confidence 5899999999999999999999999986 77887 589999888999888876 79999999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHH-HhccCCCEEEEeCCCCCCCH
Q 001041 477 KDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR-AILKDPRILLLDEATSALDA 555 (1178)
Q Consensus 477 ~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lAR-al~~~~~illlDe~ts~lD~ 555 (1178)
++|+ +|. +.++++++++..... .....|+|+++.... ++ .|| +++.+|++++|||+|+++|.
T Consensus 77 ~~n~-~g~---~~~~i~~~~~~~~~~-~~~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~d~ 139 (198)
T 1lvg_A 77 SGNL-YGT---SKEAVRAVQAMNRIC-VLDVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLRNT 139 (198)
T ss_dssp TTEE-EEE---EHHHHHHHHHTTCEE-EEECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHHTC
T ss_pred cCcc-CCC---CHHHHHHHHHcCCcE-EEECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhcCC
Confidence 9998 664 467777776542110 001234466655321 12 567 88999999999999999999
Q ss_pred HhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeC
Q 001041 556 ESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHR 595 (1178)
Q Consensus 556 ~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~ 595 (1178)
++++.|++.+....++ +.++| +. ..+|+|+++++
T Consensus 140 ~~e~~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 140 ETEESLAKRLAAARTD---MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp SCHHHHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS
T ss_pred CCHHHHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC
Confidence 9999999988776544 34567 33 77999998874
No 145
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.62 E-value=3e-18 Score=198.72 Aligned_cols=177 Identities=16% Similarity=0.171 Sum_probs=122.0
Q ss_pred cccceeEEEeC--CCEEEEEcCCCCcHHHHHHHHhccCCCCC----CcEEE----CCeecCCCCHHHHhcceEEEcCCCC
Q 001041 401 IFSGFSISISS--GTTAALVGQSGSGKSTVISLIERFYDPQA----GEVLI----DGINLKEFQLQWIRKKIGLVSQEPV 470 (1178)
Q Consensus 401 ~l~~i~l~i~~--g~~~~ivG~~GsGKStl~~~l~g~~~~~~----G~i~i----~g~~~~~~~~~~~r~~i~~v~Q~~~ 470 (1178)
+.+.+++++++ |++++|+|+||||||||+++|.|+++|.+ |+|.+ +|.++ .++..++ .+|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 45679999999 99999999999999999999999999999 99987 35555 4455555 46999999999
Q ss_pred CCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhc-cCCCEEEEeC-
Q 001041 471 LFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL-KDPRILLLDE- 548 (1178)
Q Consensus 471 l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~-~~~~illlDe- 548 (1178)
+|.+|+++||.++.....+.... .+|+|++||..+++++. .+|++++|||
T Consensus 235 ~~~~t~~~nl~~~~~~~~~~~~~----------------------------~~~~~~~~~~~i~~~~~~~~~~lllLdE~ 286 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDTDFITTQAF----------------------------CIQYEGKAHPFLDSMIKEYPFDVTILLKN 286 (365)
T ss_dssp HHHHHHCSSEEEESSCHHHHHHH----------------------------HHHHHSCCCHHHHHHHHHSCCSEEEEEEC
T ss_pred HHHHhccCCEEEEeCCchHHHHH----------------------------HHHHcCCCCHHHHHHHhhcCCCEEEECCC
Confidence 89999999999865421111111 12345566666676664 4778877787
Q ss_pred --CC------CCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhc
Q 001041 549 --AT------SALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVE 609 (1178)
Q Consensus 549 --~t------s~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1178)
|+ +++|+.....+.+.++++.+ +.++++++|.-..-+.+|++.++++ +++.|+.+||.+
T Consensus 287 ~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~i~~i~~--~l~~~~~~~~~~ 355 (365)
T 1lw7_A 287 NTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQVKAVIEK--VLNEEEISELQN 355 (365)
T ss_dssp CCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHHHHHHHH--HTSCCCCSSCCC
T ss_pred CCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH--HhcccchhHhhc
Confidence 54 46777777777777766544 6777777765333334565555543 445666666643
No 146
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.61 E-value=1.8e-15 Score=191.43 Aligned_cols=167 Identities=14% Similarity=0.118 Sum_probs=119.0
Q ss_pred ccEEEEeEEEECCCC--CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHH--------hccCCCCCCcEEECCeecC
Q 001041 382 GDIELRDVYFSYPAR--PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLI--------ERFYDPQAGEVLIDGINLK 451 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~--~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l--------~g~~~~~~G~i~i~g~~~~ 451 (1178)
+.|.+++..+.+-.. .++.+++|++|++++|++++|+|||||||||+++.+ .|.+-|.++..
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 458888876554221 235799999999999999999999999999999999 45444433211
Q ss_pred CCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHH
Q 001041 452 EFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1178)
Q Consensus 452 ~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri 531 (1178)
++++. .+|. .+| +.+.+ ..++|+|++++.
T Consensus 702 ----------~~~~d---~i~~-------~ig-----------------~~d~l--------------~~~lStf~~e~~ 730 (934)
T 3thx_A 702 ----------VSIVD---CILA-------RVG-----------------AGDSQ--------------LKGVSTFMAEML 730 (934)
T ss_dssp ----------EECCS---EEEE-------ECC----------------------------------------CHHHHHHH
T ss_pred ----------chHHH---HHHH-------hcC-----------------chhhH--------------HHhHhhhHHHHH
Confidence 11110 0110 001 00111 134788888888
Q ss_pred HHHHHh--ccCCCEEEEeCCCCCCCHHhHHHH-HHHHHHHh--cCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhH
Q 001041 532 AIARAI--LKDPRILLLDEATSALDAESEKVV-QEALDRIM--VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSK 606 (1178)
Q Consensus 532 ~lARal--~~~~~illlDe~ts~lD~~~~~~i-~~~i~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 606 (1178)
.+|+++ ..+|+++||||||+++|+.....+ ...++.+. .++|+|++||..+....||++..+++|++...++.++
T Consensus 731 ~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~ 810 (934)
T 3thx_A 731 ETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEET 810 (934)
T ss_dssp HHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTE
T ss_pred HHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCc
Confidence 888888 899999999999999999877666 44455543 3789999999988888899999999999998888776
Q ss_pred H
Q 001041 607 L 607 (1178)
Q Consensus 607 l 607 (1178)
+
T Consensus 811 l 811 (934)
T 3thx_A 811 L 811 (934)
T ss_dssp E
T ss_pred E
Confidence 5
No 147
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.61 E-value=5.8e-16 Score=183.62 Aligned_cols=73 Identities=21% Similarity=0.306 Sum_probs=67.0
Q ss_pred CCChHHHHHHHHHHHhc----cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc-CCeEEEEecCcchhhccCEEEEEe
Q 001041 522 QLSGGQKQRIAIARAIL----KDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRNADMIAVIH 594 (1178)
Q Consensus 522 ~lSgGqkqri~lARal~----~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~~d~i~~l~ 594 (1178)
.||||||||++||+++. .+|+++||||||++||+.....+.+.+.+..+ +.++|+|||+...+..||+++++.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 49999999999999998 68999999999999999999999999988753 679999999988888899999986
No 148
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.61 E-value=7.9e-17 Score=184.48 Aligned_cols=166 Identities=17% Similarity=0.202 Sum_probs=114.8
Q ss_pred ccccce-eEEEeCCCEEEEEcCCCCcHHHHHHHHhccC--CCCC----Cc-EEECCeecCCCCHHHHhcceEEEcCCCCC
Q 001041 400 QIFSGF-SISISSGTTAALVGQSGSGKSTVISLIERFY--DPQA----GE-VLIDGINLKEFQLQWIRKKIGLVSQEPVL 471 (1178)
Q Consensus 400 ~~l~~i-~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~--~~~~----G~-i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l 471 (1178)
+.|+.+ ++.+++|++++|+||+|||||||++.+++.+ +|+. |. |++++.+.- .++++++++|++.+
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~ 191 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGL 191 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTC
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCC
Confidence 356654 6899999999999999999999999999998 5555 67 899986641 24578999999988
Q ss_pred CcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhc-------cCCCEE
Q 001041 472 FTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL-------KDPRIL 544 (1178)
Q Consensus 472 ~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~-------~~~~il 544 (1178)
+..++.+||.+.... . |++|+|++.++++++ .+|+++
T Consensus 192 ~~~~v~~ni~~~~~~-~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~ll 235 (349)
T 1pzn_A 192 DPDEVLKHIYVARAF-N-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLL 235 (349)
T ss_dssp CHHHHGGGEEEEECC-S-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEE
T ss_pred CHHHHhhCEEEEecC-C-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEE
Confidence 888999999875432 1 234556666666665 689999
Q ss_pred EEeCCCCCCCHHh-------H-----HHHHHHHHHHh--cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHH
Q 001041 545 LLDEATSALDAES-------E-----KVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 545 llDe~ts~lD~~~-------~-----~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1178)
|+||||+.+|++. + +.+.+.+..+. .++|+|+++|....... ++...+...|++.+.+.+..|
T Consensus 236 IlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~~rL 313 (349)
T 1pzn_A 236 IVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRV 313 (349)
T ss_dssp EEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCSEEE
T ss_pred EEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCcEEE
Confidence 9999999999863 1 23333444443 37899999998765432 344566778888877765544
No 149
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.61 E-value=1.5e-16 Score=198.10 Aligned_cols=157 Identities=19% Similarity=0.215 Sum_probs=116.5
Q ss_pred cccEEEEeEEEECCCC--CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-CCCCcEEECCeecCCCCHHH
Q 001041 381 RGDIELRDVYFSYPAR--PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-PQAGEVLIDGINLKEFQLQW 457 (1178)
Q Consensus 381 ~~~i~~~~~~~~y~~~--~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-~~~G~i~i~g~~~~~~~~~~ 457 (1178)
.+.|.+++. ++|-- .+.++++|+||+ |++++|+||||||||||++++.|+.. ++.|.+. . .
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v-p----------a 611 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV-P----------A 611 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB-S----------S
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee-e----------h
Confidence 346888887 34421 235799999999 99999999999999999999999864 6778752 1 0
Q ss_pred HhcceEEEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHH
Q 001041 458 IRKKIGLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1178)
Q Consensus 458 ~r~~i~~v~Q~~~l~~-~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARa 536 (1178)
.+.++++++| +|. -++.||+.. .+|+|++|++.+|++
T Consensus 612 ~~~~i~~v~~---i~~~~~~~d~l~~---------------------------------------g~S~~~~e~~~la~i 649 (765)
T 1ewq_A 612 EEAHLPLFDG---IYTRIGASDDLAG---------------------------------------GKSTFMVEMEEVALI 649 (765)
T ss_dssp SEEEECCCSE---EEEECCC---------------------------------------------CCSHHHHHHHHHHHH
T ss_pred hccceeeHHH---hhccCCHHHHHHh---------------------------------------cccHHHHHHHHHHHH
Confidence 1456888887 443 466666542 258899999999999
Q ss_pred h--ccCCCEEEEeCC---CCCCCHHhH-HHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEE
Q 001041 537 I--LKDPRILLLDEA---TSALDAESE-KVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIV 599 (1178)
Q Consensus 537 l--~~~~~illlDe~---ts~lD~~~~-~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~ 599 (1178)
+ +.+|+++||||| |+++|..+. ..+.+.+.+ .++|+|++||+.+....+ .-.+.++++.
T Consensus 650 l~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~--~~~v~n~~~~ 714 (765)
T 1ewq_A 650 LKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG--LPRLKNLHVA 714 (765)
T ss_dssp HHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC--CTTEEEEEEE
T ss_pred HHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh--hhcceEEEEE
Confidence 9 999999999999 999999875 467777766 589999999998876555 2223445544
No 150
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.60 E-value=3e-16 Score=169.82 Aligned_cols=152 Identities=17% Similarity=0.264 Sum_probs=99.4
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-------CCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHH
Q 001041 408 SISSGTTAALVGQSGSGKSTVISLIERFYDP-------QAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNI 480 (1178)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-------~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni 480 (1178)
-+++|++++|+||||||||||++.|+|.+.+ ..|.+++++.+. .. +.++++++|+..++..|+.+|+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcE
Confidence 5899999999999999999999999996655 344777777542 11 2357788888877777999998
Q ss_pred hcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHh--ccCCCEEEEeCCCCCCCHHh-
Q 001041 481 AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI--LKDPRILLLDEATSALDAES- 557 (1178)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal--~~~~~illlDe~ts~lD~~~- 557 (1178)
.+.......+.. ...+ .+.+.+. +++ ..+|++++||||++.+|++.
T Consensus 95 ~~~~~~~~~~~~-~~~~--~~~~~~~----------------------------~~~~~~~~~~llilDe~~~~l~~~~~ 143 (231)
T 4a74_A 95 YVARAFNSNHQM-LLVQ--QAEDKIK----------------------------ELLNTDRPVKLLIVDSLTSHFRSEYI 143 (231)
T ss_dssp EEEECCSHHHHH-HHHH--HHHHHHH----------------------------HHTTSSSCEEEEEEETSSHHHHHHSC
T ss_pred EEEecCChHHHH-HHHH--HHHHHHH----------------------------HhcccCCceeEEEECChHHHhccccC
Confidence 875442222111 1111 0111111 111 35899999999999999842
Q ss_pred ------H-----HHHHHHHHHHh--cCCeEEEEec----Ccchhhc-cCEEEEEeCC
Q 001041 558 ------E-----KVVQEALDRIM--VNRTTVIVAH----RLSTVRN-ADMIAVIHRG 596 (1178)
Q Consensus 558 ------~-----~~i~~~i~~~~--~~~t~i~itH----~~~~~~~-~d~i~~l~~G 596 (1178)
+ +.+.+.+.++. .++|+|++|| ....+.. ||++++|++|
T Consensus 144 ~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 144 GRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 1 14445554443 3799999999 4444655 8999999875
No 151
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.59 E-value=5.3e-18 Score=181.06 Aligned_cols=140 Identities=12% Similarity=0.123 Sum_probs=105.4
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCc---ccHHHHHhcCC-
Q 001041 409 ISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT---GSIKDNIAYGK- 484 (1178)
Q Consensus 409 i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~---~ti~~ni~~~~- 484 (1178)
.++|++++|+||+|||||||+++|.|++.| +++|++|++.++. -|+++|+.+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999998864 5999999998874 36777765532
Q ss_pred -CC-CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH----HHHHHHHHHhccCCCEEEEeCCCCC------
Q 001041 485 -DD-ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ----KQRIAIARAILKDPRILLLDEATSA------ 552 (1178)
Q Consensus 485 -~~-~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGq----kqri~lARal~~~~~illlDe~ts~------ 552 (1178)
+. .+.+++.+.++..++. ..+...+..+|+|| +||+++||+++.+|+++++||||++
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~-----------~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i 129 (211)
T 3asz_A 61 HPDAFDLALYLEHAQALLRG-----------LPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKV 129 (211)
T ss_dssp SGGGBCHHHHHHHHHHHHTT-----------CCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEE
T ss_pred ChhhhhHHHHHHHHHHHHcC-----------CCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEE
Confidence 21 2334455544333221 12223456688885 5799999999999999999999999
Q ss_pred -CCHHhHHHHHHHHHHHh--cCCeEEEEecCc
Q 001041 553 -LDAESEKVVQEALDRIM--VNRTTVIVAHRL 581 (1178)
Q Consensus 553 -lD~~~~~~i~~~i~~~~--~~~t~i~itH~~ 581 (1178)
||+..+..+.+.+.+.. +++|++.++|+.
T Consensus 130 ~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 130 FVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999988888887643 578999999974
No 152
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.58 E-value=4e-17 Score=200.49 Aligned_cols=190 Identities=18% Similarity=0.274 Sum_probs=120.1
Q ss_pred cEEEEeEEEECCCCCCCccccce----------eEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-CCCcEEECCeecC
Q 001041 383 DIELRDVYFSYPARPNEQIFSGF----------SISISSGTTAALVGQSGSGKSTVISLIERFYDP-QAGEVLIDGINLK 451 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i----------~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-~~G~i~i~g~~~~ 451 (1178)
.++++|+++.|+.. ..++|+.+ +++++. ++||||+|||||||+++|.|++.| .+|.|+++|.++.
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 47899999999632 23445443 366654 999999999999999999999988 7999999999863
Q ss_pred CC---CHHHHhcceEEEcCCCCCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH
Q 001041 452 EF---QLQWIRKKIGLVSQEPVLF-TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1178)
Q Consensus 452 ~~---~~~~~r~~i~~v~Q~~~l~-~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGq 527 (1178)
.. ....+|.+++|++|++.++ ..||++||.++. +.+.. .+..+|
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~------------------~~~~~-----------~~~~~s--- 133 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ------------------NAIAG-----------EGMGIS--- 133 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH------------------HHHHC-----------SSSCCC---
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHH------------------HHhcC-----------Cccccc---
Confidence 21 2345688999999999877 468999986420 00100 111122
Q ss_pred HHHHHHHHHhccCCCEEEEeCC------CCCCCHHhHHHHHHHHHHHhc---CCeEEEEecCcchh--------hc----
Q 001041 528 KQRIAIARAILKDPRILLLDEA------TSALDAESEKVVQEALDRIMV---NRTTVIVAHRLSTV--------RN---- 586 (1178)
Q Consensus 528 kqri~lARal~~~~~illlDe~------ts~lD~~~~~~i~~~i~~~~~---~~t~i~itH~~~~~--------~~---- 586 (1178)
++++.++.+...+|+++++||| |++||+...+.+.+.++++.+ +-++++++|+++.. ..
T Consensus 134 ~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~ 213 (608)
T 3szr_A 134 HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPE 213 (608)
T ss_dssp SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSS
T ss_pred hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhc
Confidence 2445555666678999999999 999999999999999988643 34667789987632 11
Q ss_pred -cCEEEEEeCCEEEEecChhHHh
Q 001041 587 -ADMIAVIHRGKIVEKGTHSKLV 608 (1178)
Q Consensus 587 -~d~i~~l~~G~i~~~g~~~~l~ 608 (1178)
...|.|+.++.+++.|+.+++.
T Consensus 214 g~rtI~VlTK~Dlv~~g~~~~~~ 236 (608)
T 3szr_A 214 GDRTIGILTKPDLVDKGTEDKVV 236 (608)
T ss_dssp CCSEEEEEECGGGSSSSSTTCCC
T ss_pred CCceEEEecchhhcCcccHHHHH
Confidence 3568889888888888765543
No 153
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.56 E-value=6.7e-16 Score=176.24 Aligned_cols=147 Identities=21% Similarity=0.238 Sum_probs=105.5
Q ss_pred EeEEEECCCCCCCccccceeE-------EEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC-CCcEEECCeecCCCCHHHH
Q 001041 387 RDVYFSYPARPNEQIFSGFSI-------SISSGTTAALVGQSGSGKSTVISLIERFYDPQ-AGEVLIDGINLKEFQLQWI 458 (1178)
Q Consensus 387 ~~~~~~y~~~~~~~~l~~i~l-------~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~-~G~i~i~g~~~~~~~~~~~ 458 (1178)
.+++++|... ..+.|+++.+ ...+|++++|+||||||||||+++|+|+++|. +|.|...+ |..++. .
T Consensus 92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~e-d~~e~~---~ 166 (356)
T 3jvv_A 92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIE-DPIEFV---H 166 (356)
T ss_dssp EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEE-SSCCSC---C
T ss_pred cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEcc-CcHHhh---h
Confidence 4677777543 3567778776 77899999999999999999999999999987 56664433 222221 1
Q ss_pred hcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhc
Q 001041 459 RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1178)
Q Consensus 459 r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~ 538 (1178)
+...++++|.+.-.. ..+..+ +|||||.
T Consensus 167 ~~~~~~v~q~~~~~~------------~~~~~~----------------------------------------~La~aL~ 194 (356)
T 3jvv_A 167 ESKKCLVNQREVHRD------------TLGFSE----------------------------------------ALRSALR 194 (356)
T ss_dssp CCSSSEEEEEEBTTT------------BSCHHH----------------------------------------HHHHHTT
T ss_pred hccccceeeeeeccc------------cCCHHH----------------------------------------HHHHHhh
Confidence 233455665442110 011110 9999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCC
Q 001041 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRG 596 (1178)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G 596 (1178)
.+|+++++|||+ |.++...+.++ ...|+|+++++|..+.+..+||+++|..|
T Consensus 195 ~~PdvillDEp~---d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 195 EDPDIILVGEMR---DLETIRLALTA---AETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp SCCSEEEESCCC---SHHHHHHHHHH---HHTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred hCcCEEecCCCC---CHHHHHHHHHH---HhcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 999999999999 77776555444 33589999999999999889999888543
No 154
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.55 E-value=1.6e-15 Score=169.61 Aligned_cols=151 Identities=23% Similarity=0.203 Sum_probs=102.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCC----HHHH--hcceEEEcCCCCCCc-ccHHHHHhcC
Q 001041 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ----LQWI--RKKIGLVSQEPVLFT-GSIKDNIAYG 483 (1178)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~----~~~~--r~~i~~v~Q~~~l~~-~ti~~ni~~~ 483 (1178)
+|++++|+||||||||||++.|.|++.|++|+|.++|.|+.... +..+ |..++|++|++.++. .++++|+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999986543 2222 457999999997764 5788888642
Q ss_pred CCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHH
Q 001041 484 KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563 (1178)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~ 563 (1178)
. . +.+ +..+-..++..+. ....++..++||+++|||+..+|+.++| .||+.+...+.+
T Consensus 181 ~-------~----~~~--d~~llDt~G~~~~----~~~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~ 238 (304)
T 1rj9_A 181 K-------A----RGY--DLLFVDTAGRLHT----KHNLMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLE 238 (304)
T ss_dssp H-------H----HTC--SEEEECCCCCCTT----CHHHHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHH
T ss_pred H-------h----CCC--CEEEecCCCCCCc----hHHHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHH
Confidence 1 0 000 0000011111110 0112466779999999999999994444 445544444444
Q ss_pred HHHHHh--cCCeEEEEecCcch
Q 001041 564 ALDRIM--VNRTTVIVAHRLST 583 (1178)
Q Consensus 564 ~i~~~~--~~~t~i~itH~~~~ 583 (1178)
.++... .+.|+|++||.-..
T Consensus 239 ~~~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 239 QAKKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp HHHHHHHHHCCSEEEEECTTSS
T ss_pred HHHHHHHHcCCcEEEEECCccc
Confidence 444432 37899999997543
No 155
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.54 E-value=5.5e-17 Score=186.89 Aligned_cols=149 Identities=13% Similarity=0.083 Sum_probs=112.8
Q ss_pred EEEeEEEE---CCCCCCCccc---------cceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCC
Q 001041 385 ELRDVYFS---YPARPNEQIF---------SGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE 452 (1178)
Q Consensus 385 ~~~~~~~~---y~~~~~~~~l---------~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~ 452 (1178)
+|+|++|+ |+.. ++++| +++||.+++|+.++|+||||||||||+++|+|+++|.+|.|.++|. .+
T Consensus 137 ~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~--~e 213 (361)
T 2gza_A 137 FFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV--PE 213 (361)
T ss_dssp TTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS--SC
T ss_pred CcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc--cc
Confidence 78899998 8532 23455 9999999999999999999999999999999999999999999975 45
Q ss_pred CCHHHHhcceEEEc-CCCCC---CcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 001041 453 FQLQWIRKKIGLVS-QEPVL---FTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1178)
Q Consensus 453 ~~~~~~r~~i~~v~-Q~~~l---~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqk 528 (1178)
+.....+..++|++ |++.+ +..|+++||..+.....+..+...++..++.++++.+|.|.+|.+++-+.+-..+..
T Consensus 214 ~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~t~H~~~~~~~~ 293 (361)
T 2gza_A 214 LFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRGGEAYDFINVAASGHGGSITSCHAGSCELTF 293 (361)
T ss_dssp CCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCSTHHHHHHHHHHTTCCSCEEEEECSSHHHHH
T ss_pred cCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHhcCCCeEEEEECCCCHHHHH
Confidence 55555678899999 98876 788999999986543333222222233445678888999999989888777788899
Q ss_pred HHHHHHHH
Q 001041 529 QRIAIARA 536 (1178)
Q Consensus 529 qri~lARa 536 (1178)
+|+.....
T Consensus 294 ~Rl~~l~~ 301 (361)
T 2gza_A 294 ERLALMVL 301 (361)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99987753
No 156
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.54 E-value=1.3e-14 Score=147.78 Aligned_cols=79 Identities=25% Similarity=0.301 Sum_probs=70.6
Q ss_pred CCCCChHHHHHHHHHHHhc----cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEE--
Q 001041 520 GTQLSGGQKQRIAIARAIL----KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVI-- 593 (1178)
Q Consensus 520 g~~lSgGqkqri~lARal~----~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l-- 593 (1178)
...||||||||++|||++. ++|+++||||||++||+.+.+.+.+.|++..++.++|+|||+...+..||+++.+
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~ 141 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSM 141 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEEe
Confidence 3679999999999999995 5679999999999999999999999999888888999999999988899999865
Q ss_pred eCCEE
Q 001041 594 HRGKI 598 (1178)
Q Consensus 594 ~~G~i 598 (1178)
++|..
T Consensus 142 ~~g~s 146 (173)
T 3kta_B 142 RDGVS 146 (173)
T ss_dssp ETTEE
T ss_pred cCCEE
Confidence 46643
No 157
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.53 E-value=5e-16 Score=170.35 Aligned_cols=181 Identities=17% Similarity=0.143 Sum_probs=105.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHh--ccCCCCCCcEEECCeecCCCCHHHHhcc
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIE--RFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~--g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1178)
+++++++..++.- ..+|.+ .+++|++++|+||||||||||+++|+ |..++.+|.+.+++.+... .....+++
T Consensus 7 ~~~~~i~tg~~~l--D~~l~G---gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 80 (251)
T 2ehv_A 7 QPVRRVKSGIPGF--DELIEG---GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREMAS 80 (251)
T ss_dssp -CCCEECCSCTTT--GGGTTT---SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHHHT
T ss_pred cccceeecCCHhH--HHHhcC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHHHH
Confidence 4455555555421 123433 68999999999999999999999999 6656677777777643211 12223356
Q ss_pred eEEEcCCCCCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccC
Q 001041 462 IGLVSQEPVLF-TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1178)
Q Consensus 462 i~~v~Q~~~l~-~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~ 540 (1178)
+++.+|++..+ .-++.++....... ...+. . ... ...+-++.+....+..-..+
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----------~---------~~~----~~~~~~~~~~~~~~~l~~~~ 135 (251)
T 2ehv_A 81 FGWDFEKYEKEGKIAIVDGVSSVVGL-PSEEK-----------F---------VLE----DRFNVDNFLRYIYRVVKAIN 135 (251)
T ss_dssp TTCCHHHHHHTTSEEEEC--------------------------------------------CCHHHHHHHHHHHHHHTT
T ss_pred cCCChHHHhhcCCEEEEEcccccccc-ccccc-----------e---------ecc----CcccHHHHHHHHHHHHHhhC
Confidence 77877764222 11222222110000 00000 0 000 11233444444444444579
Q ss_pred CCEEEEeCCCCCCC-----HHhHHHHHHHHHHHh-cCCeEEEEecCcchh----------hcc-CEEEEEeC
Q 001041 541 PRILLLDEATSALD-----AESEKVVQEALDRIM-VNRTTVIVAHRLSTV----------RNA-DMIAVIHR 595 (1178)
Q Consensus 541 ~~illlDe~ts~lD-----~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~----------~~~-d~i~~l~~ 595 (1178)
|++++|||||+.+| +...+.+.+.++.+. .++|+|++||.++.. ..| |+|++|++
T Consensus 136 p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 136 AKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp CSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred CCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 99999999999997 555556777776653 489999999998876 357 99999963
No 158
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.52 E-value=6.8e-16 Score=179.38 Aligned_cols=166 Identities=16% Similarity=0.178 Sum_probs=99.2
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcc
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1178)
+.|.++|++++|+. ..++++++|+| +|+|+||||||||++.|+|...+..|. +|.++...+ ...+..
T Consensus 10 ~~l~~~~l~~~y~~---~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~---~~~~~~~~~-t~~~~~ 76 (418)
T 2qag_C 10 GYVGFANLPNQVYR---KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEY---PGPSHRIKK-TVQVEQ 76 (418)
T ss_dssp -----CCCCCCTTT---TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCC---CSCC------CCEEEE
T ss_pred CcEEEEecceeECC---EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCC---CCcccCCcc-ceeeee
Confidence 45899999999963 46999999997 999999999999999999998765551 332221111 111356
Q ss_pred eEEEcCCCCCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccC
Q 001041 462 IGLVSQEPVLF-TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1178)
Q Consensus 462 i~~v~Q~~~l~-~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~ 540 (1178)
+++++|++.++ ..||.||+.++... ..++.+.. +.+.+.. .++.+++||++||||++++
T Consensus 77 i~~v~q~~~~~~~Ltv~Dt~g~~~~~-~~~~~~~~-----i~~~i~~--------------~~~~~l~qr~~IaRal~~d 136 (418)
T 2qag_C 77 SKVLIKEGGVQLLLTIVDTPGFGDAV-DNSNCWQP-----VIDYIDS--------------KFEDYLNAESRVNRRQMPD 136 (418)
T ss_dssp EECC------CEEEEEEECC------------CHH-----HHHHHHH--------------HHHHHTTTSCC-CCCCCCC
T ss_pred EEEEEecCCcccceeeeechhhhhhc-cchhhHHH-----HHHHHHH--------------HHHHHHHHHHHHHHHhccC
Confidence 89999998776 67999999876532 11111111 1122211 2345667899999999999
Q ss_pred CC---EEEEeCCC-CCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchh
Q 001041 541 PR---ILLLDEAT-SALDAESEKVVQEALDRIMVNRTTVIVAHRLSTV 584 (1178)
Q Consensus 541 ~~---illlDe~t-s~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~ 584 (1178)
|+ ++++|||| ++||+..... ++.+..+.++|+|.|+.+.+
T Consensus 137 ~~~~vlL~ldePt~~~L~~~d~~~----lk~L~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 137 NRVQCCLYFIAPSGHGLKPLDIEF----MKRLHEKVNIIPLIAKADTL 180 (418)
T ss_dssp C-CCEEEEECCC-CCSCCHHHHHH----HHHHTTTSEEEEEEESTTSS
T ss_pred CCeeEEEEEecCcccCCCHHHHHH----HHHHhccCcEEEEEEcccCc
Confidence 99 99999999 6999876433 23334578899999987654
No 159
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.52 E-value=4.4e-16 Score=174.81 Aligned_cols=162 Identities=15% Similarity=0.145 Sum_probs=78.3
Q ss_pred EeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcc-CCCCCCcEEECCeecCCCCHHHHhcceEEE
Q 001041 387 RDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF-YDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465 (1178)
Q Consensus 387 ~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~-~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v 465 (1178)
+|+++.|+. +.++++++|+| +|+|++|+|||||++.|+|. ..|.+| |.++|.++.. +. . +..++++
T Consensus 2 ~~l~~~~~~---~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~-~-~~~~~~~ 68 (301)
T 2qnr_A 2 SNLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TV-Q-IEASTVE 68 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEE
T ss_pred CCCcceECC---EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cc-e-EeeEEEE
Confidence 477888853 46999999988 99999999999999999997 888999 8888877643 11 1 3568999
Q ss_pred cCCCCCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEE
Q 001041 466 SQEPVLF-TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRIL 544 (1178)
Q Consensus 466 ~Q~~~l~-~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~il 544 (1178)
+|++.++ .-|+.|+..++......++.....+. +.+. .+..+ .++|||||||+++|||+. ++
T Consensus 69 ~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~--l~~~-------~~~~~----~~~sgg~rqrv~~ara~~----ll 131 (301)
T 2qnr_A 69 IEERGVKLRLTVVDTPGYGDAINCRDCFKTIISY--IDEQ-------FERYL----HDESGLNRRHIIDNRVHC----CF 131 (301)
T ss_dssp EC---CCEEEEEEEEC-----------CTTHHHH--HHHH-------HHHHH----HHHTSSCCTTCCCCCCCE----EE
T ss_pred ecCCCcccCcchhhhhhhhhhcCcHHHHHHHHHH--HHHH-------HHHHH----HHhCHHhhhhhhhhhhhh----ee
Confidence 9987654 56888887765321111111111110 1111 11222 358999999999999985 99
Q ss_pred EEeCCCCC-CCHHhHHHHHHHHHHHhc--CCeEEEEecCcc
Q 001041 545 LLDEATSA-LDAESEKVVQEALDRIMV--NRTTVIVAHRLS 582 (1178)
Q Consensus 545 llDe~ts~-lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~ 582 (1178)
++||||++ ||+... +.++.+.+ +.++|+.+|++.
T Consensus 132 ~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 132 YFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp EEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred eeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 99999985 999863 33444333 346666678764
No 160
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.52 E-value=4.8e-16 Score=165.56 Aligned_cols=169 Identities=14% Similarity=0.217 Sum_probs=99.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC-----CCCCCcEEE-------CCeec-
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY-----DPQAGEVLI-------DGINL- 450 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~-----~~~~G~i~i-------~g~~~- 450 (1178)
|+++|++|.|+ .+++++ |.+++|++++|+|++|||||||++.|.|.. .|+.|.+.. ++..+
T Consensus 4 l~~~~~~~~~~----~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~ 77 (210)
T 1pui_A 4 LNYQQTHFVMS----APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 77 (210)
T ss_dssp -------CEEE----ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE
T ss_pred hhhhhhhheee----cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE
Confidence 78899999995 257888 889999999999999999999999999988 788887654 22222
Q ss_pred --CCCC--------HHHHhcceEEEcCCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccc-hhcC
Q 001041 451 --KEFQ--------LQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDT-LVGE 518 (1178)
Q Consensus 451 --~~~~--------~~~~r~~i~~v~Q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t-~~~~ 518 (1178)
.... ...+++.++++.|++..+.+ .+..++..+ .+..+ .+. .+++... +... .++.
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~---~~~~~-~~~------~~~~~~~--~~~~~~v~n 145 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHP---LKDLD-QQM------IEWAVDS--NIAVLVLLT 145 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSC---CCHHH-HHH------HHHHHHT--TCCEEEEEE
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCC---CchhH-HHH------HHHHHHc--CCCeEEEEe
Confidence 1111 12234444455543322221 222222221 12211 111 1112111 2222 2355
Q ss_pred CCCCCChHHHHH-HHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc
Q 001041 519 HGTQLSGGQKQR-IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV 570 (1178)
Q Consensus 519 ~g~~lSgGqkqr-i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~ 570 (1178)
+...+|+||||| +..+|+++.+|+++++||||||+|......+.+.|.+..+
T Consensus 146 K~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 146 KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred cccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 666799999999 8999999999999999999999999999888888877653
No 161
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.51 E-value=1.3e-16 Score=177.23 Aligned_cols=129 Identities=12% Similarity=0.073 Sum_probs=94.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCC---C
Q 001041 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD---A 487 (1178)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~---~ 487 (1178)
++.+++|+|++|||||||++.|.+++.+. |. . ++.+.+|+||+++++.++++|+.++.++ .
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g~--------------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-YG--------------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLL 93 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-HG--------------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-CC--------------C-CceEEEeccccccCChHHHHHHhccccccchh
Confidence 57799999999999999999999998763 20 0 3456677999999999999999765321 0
Q ss_pred CHHHHHHHHHHhcHHHHHHhCCCCccch------hcCCCCCCChHHHHHHHHH--HHhccCCCEEEEeCCCCCCCHHh
Q 001041 488 TTEEIRVATELANAAKFIDKLPQGIDTL------VGEHGTQLSGGQKQRIAIA--RAILKDPRILLLDEATSALDAES 557 (1178)
Q Consensus 488 ~~~~~~~~~~~~~~~~~i~~~~~g~~t~------~~~~g~~lSgGqkqri~lA--Ral~~~~~illlDe~ts~lD~~~ 557 (1178)
.....-.+.+...+.+++..++.|++|. +...+.++||||+||+++| |++ +|+|+|+||+++++|++.
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 0000011122334567888899997653 5566789999999999998 666 999999999999999875
No 162
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.49 E-value=1.8e-14 Score=155.96 Aligned_cols=166 Identities=15% Similarity=0.048 Sum_probs=110.5
Q ss_pred CccccceeE-EEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhc---ceEEEcCCCCCCcc
Q 001041 399 EQIFSGFSI-SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRK---KIGLVSQEPVLFTG 474 (1178)
Q Consensus 399 ~~~l~~i~l-~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~---~i~~v~Q~~~l~~~ 474 (1178)
.+.|+++.. .+++|++++|+||+|||||||++.|++.+.+.+|.|.+.+.+. +...++. .+++.+|+..-
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--- 82 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYIE--- 82 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGBT---
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHhh---
Confidence 457888887 8999999999999999999999999998888788887755332 2222222 23333332110
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCC--EEEEeCCCCC
Q 001041 475 SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR--ILLLDEATSA 552 (1178)
Q Consensus 475 ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~--illlDe~ts~ 552 (1178)
+++.+-.. ... .. + ...+. ...|.+|.++...+.+...+|+ ++++||||+.
T Consensus 83 ---~~~~~~~~-~~~--------------~~-----~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 135 (235)
T 2w0m_A 83 ---KKLIIIDA-LMK--------------EK-----E-DQWSL---VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSAL 135 (235)
T ss_dssp ---TTEEEEEC-CC------------------------CTTBC---SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGG
T ss_pred ---CCEEEEec-ccc--------------cc-----C-ceeee---cCCCHHHHHHHHHHHHHhhCCCceEEEEECchHh
Confidence 01111000 000 00 0 00011 1348999988888877778999 9999999988
Q ss_pred C--CHHhHHHHHHHHHHHh--cCCeEEEEecCc--------chhh-ccCEEEEEeCCE
Q 001041 553 L--DAESEKVVQEALDRIM--VNRTTVIVAHRL--------STVR-NADMIAVIHRGK 597 (1178)
Q Consensus 553 l--D~~~~~~i~~~i~~~~--~~~t~i~itH~~--------~~~~-~~d~i~~l~~G~ 597 (1178)
+ |+...+.+.+.++++. .++|+|+++|.. ..+. .||+|++|+..+
T Consensus 136 ~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 136 FLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp SSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 8 9988778888887664 378999999998 3455 499999998643
No 163
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.47 E-value=1.7e-14 Score=182.04 Aligned_cols=168 Identities=15% Similarity=0.152 Sum_probs=107.3
Q ss_pred ccEEEEeEEEECC----CCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHH
Q 001041 382 GDIELRDVYFSYP----ARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW 457 (1178)
Q Consensus 382 ~~i~~~~~~~~y~----~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~ 457 (1178)
+.+.+++...-.= ...++.+++|++|++++|++++|+||||||||||++.+.+..-..
T Consensus 639 ~~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a------------------ 700 (918)
T 3thx_B 639 RKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA------------------ 700 (918)
T ss_dssp CEEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH------------------
T ss_pred CcEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh------------------
Confidence 3577777644320 112467999999999999999999999999999999987532110
Q ss_pred HhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHh
Q 001041 458 IRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1178)
Q Consensus 458 ~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal 537 (1178)
..-.++|++..-+ .+.+++. .. .++.+ .+..+-.++|+|++|+..++|+
T Consensus 701 --q~g~~vpa~~~~i--~~~d~i~-~~--------------ig~~d-----------~l~~~~stfs~em~~~~~il~~- 749 (918)
T 3thx_B 701 --QIGSYVPAEEATI--GIVDGIF-TR--------------MGAAD-----------NIYKGRSTFMEELTDTAEIIRK- 749 (918)
T ss_dssp --HHTCCBSSSEEEE--ECCSEEE-EE--------------C---------------------CCHHHHHHHHHHHHHH-
T ss_pred --hcCccccchhhhh--hHHHHHH-Hh--------------CChHH-----------HHHHhHHHhhHHHHHHHHHHHh-
Confidence 0011223221000 0000010 00 01111 1122235789999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHH-HHHHHHh--cCCeEEEEecCcchhhccCEEEE-EeCCEE
Q 001041 538 LKDPRILLLDEATSALDAESEKVVQ-EALDRIM--VNRTTVIVAHRLSTVRNADMIAV-IHRGKI 598 (1178)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~-~~i~~~~--~~~t~i~itH~~~~~~~~d~i~~-l~~G~i 598 (1178)
..+|+++||||||+++|+.....+. ..++.+. .++|+|++||..+....+|+.-- +.++++
T Consensus 750 a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~~~~v~n~~~ 814 (918)
T 3thx_B 750 ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYSHQVGNYHM 814 (918)
T ss_dssp CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHTTTTEEEEEE
T ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhcccceEEEEE
Confidence 7899999999999999999877765 5555543 47999999999988776765421 344444
No 164
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.47 E-value=4.1e-15 Score=151.57 Aligned_cols=87 Identities=16% Similarity=0.147 Sum_probs=67.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcccCCC---CCeEEECCcccCCCC---hHHHH-Hhcc----ccccccccccccHHHHHh
Q 001041 1072 KTVALVGESGSGKSTVVSLLQRFYDPD---AGHITLDGVEIQKLQ---LKWLR-QQMG----LVSQEPVLFNDTIRANIA 1140 (1178)
Q Consensus 1072 e~vaIVG~SGSGKSTL~~lL~R~y~p~---~G~I~IDG~dI~~i~---l~~LR-~~Is----iV~Qdp~LF~gTIreNI~ 1140 (1178)
+++||||+||||||||+++|.|+|+|+ .|.|++||.|+.+++ .+++| ++++ +++|++++| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999998 899999999999887 88999 5899 899999998 222
Q ss_pred cCCCCCCCHHHHHHHHHHcCchHHHhh-cccccccccc
Q 001041 1141 YGKGGDATEAEIQAASEMANAHKFICS-LQQVRTSRLL 1177 (1178)
Q Consensus 1141 ~g~~~~asdeei~~Al~~A~~~dfI~~-LP~gldT~v~ 1177 (1178)
+ ++++ .|+++++|.+ || ||||.|+
T Consensus 77 -~------~~~~-----~a~l~~~i~~~l~-g~dt~i~ 101 (171)
T 2f1r_A 77 -V------SEEE-----GNDLDWIYERYLS-DYDLVIT 101 (171)
T ss_dssp -C------CHHH-----HTCHHHHHHHHTT-TCSEEEE
T ss_pred -C------Chhh-----hhCHHHHHHhhCC-CCCEEEE
Confidence 1 1222 7899999999 99 9999874
No 165
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.44 E-value=2.9e-14 Score=178.56 Aligned_cols=168 Identities=13% Similarity=0.133 Sum_probs=109.9
Q ss_pred ccEEEEeEEEECCC--CCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-CCCcEEECCeecCCCCHHHH
Q 001041 382 GDIELRDVYFSYPA--RPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-QAGEVLIDGINLKEFQLQWI 458 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~--~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-~~G~i~i~g~~~~~~~~~~~ 458 (1178)
+.|.+++...-.-. ..+..+++|++|+ ++|++++|+||||||||||+++|.|...+ ..|.. +.. -
T Consensus 576 ~~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~------vpa-----~ 643 (800)
T 1wb9_A 576 PGIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSY------VPA-----Q 643 (800)
T ss_dssp SCEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCC------BSS-----S
T ss_pred CCEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcc------cch-----h
Confidence 34777765422100 0235799999999 99999999999999999999999997432 23321 110 1
Q ss_pred hcceEEEcCCCCCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHh
Q 001041 459 RKKIGLVSQEPVLF-TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1178)
Q Consensus 459 r~~i~~v~Q~~~l~-~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal 537 (1178)
+.++++++| +| .-++.||+..+ ..++|+|+++ ++.+...
T Consensus 644 ~~~i~~~~~---i~~~~~~~d~l~~~------------------------------------~stf~~e~~~-~~~il~~ 683 (800)
T 1wb9_A 644 KVEIGPIDR---IFTRVGAADDLASG------------------------------------RSTFMVEMTE-TANILHN 683 (800)
T ss_dssp EEEECCCCE---EEEEEC-----------------------------------------------CHHHHHH-HHHHHHH
T ss_pred cccceeHHH---HHhhCCHHHHHHhh------------------------------------hhhhhHHHHH-HHHHHHh
Confidence 235666665 33 23455554321 1235677665 4444445
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHH-HHHHHHHh--cCCeEEEEecCcchhhccCEEEEEeCCEEEEe
Q 001041 538 LKDPRILLLDEATSALDAESEKVV-QEALDRIM--VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEK 601 (1178)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i-~~~i~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~ 601 (1178)
..+|+++|||||++++|+.....+ .+.++.+. .++|+|++||+.+....||++..+++|++...
T Consensus 684 a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~ 750 (800)
T 1wb9_A 684 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDAL 750 (800)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEE
T ss_pred ccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEE
Confidence 789999999999999998765543 55555554 37899999999988878888877888887643
No 166
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.43 E-value=8.7e-15 Score=155.89 Aligned_cols=143 Identities=13% Similarity=0.118 Sum_probs=100.3
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC--CCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcc-cH----HHH
Q 001041 407 ISISSGTTAALVGQSGSGKSTVISLIERFYDP--QAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SI----KDN 479 (1178)
Q Consensus 407 l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~--~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-ti----~~n 479 (1178)
-+.++|++++|+||||||||||+++|+|+++| ..|.|.+.+.+.+. ..+..++|++|++..|.. ++ .||
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E~ 86 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLEH 86 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHHH
Confidence 35789999999999999999999999999986 68899888866543 235679999999877754 34 355
Q ss_pred HhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHH
Q 001041 480 IAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEK 559 (1178)
Q Consensus 480 i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~ 559 (1178)
+.+....+ |-.+++ ++.++..++++||| ||+.+.+
T Consensus 87 ~~~~~~~y-------------------------------------g~~~~~---v~~~l~~G~illLD-----LD~~~~~ 121 (219)
T 1s96_A 87 AEVFGNYY-------------------------------------GTSREA---IEQVLATGVDVFLD-----IDWQGAQ 121 (219)
T ss_dssp EEETTEEE-------------------------------------EEEHHH---HHHHHTTTCEEEEE-----CCHHHHH
T ss_pred HHHHhccC-------------------------------------CCCHHH---HHHHHhcCCeEEEE-----ECHHHHH
Confidence 44321100 000111 22333446999999 9999999
Q ss_pred HHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhc
Q 001041 560 VVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVE 609 (1178)
Q Consensus 560 ~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1178)
.+.+.+. ++.|+++++|+++.+.. |+ +.+| .++++++..
T Consensus 122 ~i~~~l~---~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~ 160 (219)
T 1s96_A 122 QIRQKMP---HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAK 160 (219)
T ss_dssp HHHHHCT---TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHH
T ss_pred HHHHHcc---CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHH
Confidence 9988765 57899999999998865 32 5666 567776643
No 167
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.42 E-value=3.7e-13 Score=149.99 Aligned_cols=151 Identities=18% Similarity=0.230 Sum_probs=97.9
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHh-cCCCC
Q 001041 408 SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIA-YGKDD 486 (1178)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~-~~~~~ 486 (1178)
.+++|++++|+||+|||||||++.+++.+. .|.+. .|.+... +..+.|++.+... ..+..++. ++. .
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~-~ 93 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGA-H 93 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHT-T
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCC------CccEEEEECCCCH--HHHHHHHHHHHh-h
Confidence 378999999999999999999999998664 46663 3443211 2467887766432 22322221 121 1
Q ss_pred CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC--CCCHHhH---HHH
Q 001041 487 ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS--ALDAESE---KVV 561 (1178)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts--~lD~~~~---~~i 561 (1178)
....+....++. + ++....+.....||+||+|++ |+++.+|+++++||||+ ++|.... ..+
T Consensus 94 ~~~~~~~~~~~~---------l--~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~ 159 (279)
T 1nlf_A 94 LSAEERQAVADG---------L--LIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQV 159 (279)
T ss_dssp SCHHHHHHHHHH---------E--EECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHH
T ss_pred cChhhhhhccCc---------e--EEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHH
Confidence 222222222221 1 233334556778999998875 68888999999999999 9998654 566
Q ss_pred HHHHHHHh--cCCeEEEEecCcchh
Q 001041 562 QEALDRIM--VNRTTVIVAHRLSTV 584 (1178)
Q Consensus 562 ~~~i~~~~--~~~t~i~itH~~~~~ 584 (1178)
.+.++.+. .++|+|+++|.....
T Consensus 160 ~~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 160 IGRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHHHHCCEEEEEEEC----
T ss_pred HHHHHHHHHHcCCEEEEEecCCCcc
Confidence 67776664 389999999987654
No 168
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.39 E-value=1.4e-14 Score=167.07 Aligned_cols=177 Identities=14% Similarity=0.124 Sum_probs=110.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCE--EEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcc
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTT--AALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~--~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1178)
+++++ ++.|++ .+ |+++||++++|++ ++|+||||||||||+++|+|+. ++|.++........+..
T Consensus 17 l~~~~-~~~y~~---~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~~ 83 (427)
T 2qag_B 17 VPLAG-HVGFDS---LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQS 83 (427)
T ss_dssp CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEEE
T ss_pred EEEee-EEEECC---ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEee
Confidence 55566 778853 35 9999999999999 9999999999999999999983 34444433333334568
Q ss_pred eEEEcCCCCCC-cccHHHHHhcCCCCCCHHHHHHH----HHHhcHHHHHHhC-------CCCccch-------hcCCCCC
Q 001041 462 IGLVSQEPVLF-TGSIKDNIAYGKDDATTEEIRVA----TELANAAKFIDKL-------PQGIDTL-------VGEHGTQ 522 (1178)
Q Consensus 462 i~~v~Q~~~l~-~~ti~~ni~~~~~~~~~~~~~~~----~~~~~~~~~i~~~-------~~g~~t~-------~~~~g~~ 522 (1178)
++|++|++.++ ..|+.||+.||.. .+.+..+.. .+ ....+.+... +...++. +-+.+..
T Consensus 84 i~~v~Q~~~l~~~ltv~D~~~~g~~-~~~~~~~~~i~~~i~-~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~ 161 (427)
T 2qag_B 84 NTYDLQESNVRLKLTIVSTVGFGDQ-INKEDSYKPIVEFID-AQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHS 161 (427)
T ss_dssp EEEEEEC--CEEEEEEEEEECCCC--CCHHHHSHHHHHHHH-HHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC--
T ss_pred EEEEeecCccccccchhhhhhhhhc-cccchhhhHHHHHHH-HHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCC
Confidence 99999999877 6799999998764 232221111 11 1122222222 1112222 2344456
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEe
Q 001041 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVA 578 (1178)
Q Consensus 523 lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~it 578 (1178)
|+-.+ +.++++|..+++|+++|+|+..|.+.....+.+.|++.+ .+..++.++
T Consensus 162 l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is 216 (427)
T 2qag_B 162 LKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFP 216 (427)
T ss_dssp -CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC
T ss_pred CCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecC
Confidence 77666 789999999999999999999998876667777777533 345666665
No 169
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.39 E-value=1.7e-15 Score=171.82 Aligned_cols=167 Identities=14% Similarity=0.119 Sum_probs=109.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhh-chhhHHHHHHHHHHHHHHhcCCCCCCCCCCCCC-cccCccccEE---------
Q 001041 976 KATFSDVFKVFFSLTMTAIGISQSSS-FSSDSNKAKSAAASIFAIIDRESKIDPSDESGT-ILEDVKGEIE--------- 1044 (1178)
Q Consensus 976 ~~t~g~l~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~-~~~~~~g~I~--------- 1044 (1178)
.++.+.+..++.++.....+ .+.. ....++....+.+|+..+++.|... ...... ...+..+.++
T Consensus 75 ~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~Ri~~~l~~p~~~--~~~~~~~ir~~~~~~i~l~~l~~~g~ 150 (330)
T 2pt7_A 75 AFSLSRLMHFARCCASFKKK--TIDNYENPILSSNLANGERVQIVLSPVTVN--DETISISIRIPSKTTYPHSFFEEQGF 150 (330)
T ss_dssp GGSHHHHHHHHHHHHHHTTC--CCCSSSCCEEEEECTTSCEEEEECTTTSSS--TTCCEEEEECCCCCCCCHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHhCC--CCCCCCCeeEEEEcCCCcEEEEEEcCCccC--CCCceEEEeCCCCCCCCHHHHHhCCC
Confidence 57888888887776655443 2222 2233333334456777666533211 110000 0011234567
Q ss_pred EeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcccc
Q 001041 1045 LHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLV 1124 (1178)
Q Consensus 1045 f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV 1124 (1178)
|+||+| | .++++++||+|++|+.++|+||||||||||+++|.|+++|++|.|+|+|.+ ++.+..+|+.++++
T Consensus 151 ~~~v~f-y-----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e~~~~~~~~~i~~~ 222 (330)
T 2pt7_A 151 YNLLDN-K-----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--EIVFKHHKNYTQLF 222 (330)
T ss_dssp TTTSTT-H-----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--CCCCSSCSSEEEEE
T ss_pred cCchhh-H-----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--ccccccchhEEEEE
Confidence 889999 8 259999999999999999999999999999999999999999999999986 44455567888888
Q ss_pred ccccccccccHHHHHhc----CCC----CCCCHHHHHHHHHH
Q 001041 1125 SQEPVLFNDTIRANIAY----GKG----GDATEAEIQAASEM 1158 (1178)
Q Consensus 1125 ~Qdp~LF~gTIreNI~~----g~~----~~asdeei~~Al~~ 1158 (1178)
+|. .-+.|.+|+. .+. ++.+..|++++++.
T Consensus 223 ~gg----g~~~r~~la~aL~~~p~ilildE~~~~e~~~~l~~ 260 (330)
T 2pt7_A 223 FGG----NITSADCLKSCLRMRPDRIILGELRSSEAYDFYNV 260 (330)
T ss_dssp CBT----TBCHHHHHHHHTTSCCSEEEECCCCSTHHHHHHHH
T ss_pred eCC----ChhHHHHHHHHhhhCCCEEEEcCCChHHHHHHHHH
Confidence 761 1266666642 211 13444566665544
No 170
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.38 E-value=5.2e-14 Score=150.50 Aligned_cols=93 Identities=18% Similarity=0.218 Sum_probs=63.3
Q ss_pred cccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCCh-HHHHHhcccccccccccc-----
Q 001041 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL-KWLRQQMGLVSQEPVLFN----- 1132 (1178)
Q Consensus 1059 ~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l-~~LR~~IsiV~Qdp~LF~----- 1132 (1178)
..|+||||+|++|+.+|||||||||||||+++|.|++ | |+|.+ |+++.+.+. ...|+.+++++|++.+|.
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 3699999999999999999999999999999999999 6 99999 988865532 345788999999986653
Q ss_pred ------ccHHHHHhcCCCCCCCHHHHHHHHHHcC
Q 001041 1133 ------DTIRANIAYGKGGDATEAEIQAASEMAN 1160 (1178)
Q Consensus 1133 ------gTIreNI~~g~~~~asdeei~~Al~~A~ 1160 (1178)
+++++| .||. +++++.++++...
T Consensus 87 ~~~l~~~~~~~~-~~g~----~~~~i~~~l~~~~ 115 (218)
T 1z6g_A 87 EDFLEYDNYANN-FYGT----LKSEYDKAKEQNK 115 (218)
T ss_dssp TCEEEEEEETTE-EEEE----EHHHHHHHHHTTC
T ss_pred cchhhhhhcccc-cCCC----cHHHHHHHHhCCC
Confidence 455566 4542 3456777666543
No 171
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.38 E-value=5.8e-15 Score=148.49 Aligned_cols=90 Identities=14% Similarity=0.107 Sum_probs=75.1
Q ss_pred EEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccc
Q 001041 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGL 1123 (1178)
Q Consensus 1044 ~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Isi 1123 (1178)
+-+|++++|. +..+++++||+|++|+.+||+||+|||||||+++|.|+. |++|+|.++|.++.+. ...+ .+
T Consensus 9 ~~~~~~~~~g---~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~---~~ 79 (158)
T 1htw_A 9 PDEFSMLRFG---KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA---GK 79 (158)
T ss_dssp CSHHHHHHHH---HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET---TE
T ss_pred CCHHHHHHHH---HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC---Cc
Confidence 3346677774 346999999999999999999999999999999999999 9999999999998532 1112 27
Q ss_pred cccccccccccHHHHHh-cC
Q 001041 1124 VSQEPVLFNDTIRANIA-YG 1142 (1178)
Q Consensus 1124 V~Qdp~LF~gTIreNI~-~g 1142 (1178)
|+|++.+|.-|+.||+. +|
T Consensus 80 ~~q~~~l~~ltv~e~l~~~g 99 (158)
T 1htw_A 80 MIYHFDLYRLADPEELEFMG 99 (158)
T ss_dssp EEEEEECTTCSCTTHHHHST
T ss_pred ceeccccccCCcHHHHHHcC
Confidence 99999999889999995 45
No 172
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.37 E-value=1.2e-12 Score=140.15 Aligned_cols=151 Identities=15% Similarity=0.136 Sum_probs=95.2
Q ss_pred ccccceeE-EEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHH
Q 001041 400 QIFSGFSI-SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKD 478 (1178)
Q Consensus 400 ~~l~~i~l-~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ 478 (1178)
+.|+++.. .+++|++++|+||+|||||||++.+++ .+. + .+.|+..+..+-...+++
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~-~-------------------~v~~i~~~~~~~~~~~~~ 64 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSG-K-------------------KVAYVDTEGGFSPERLVQ 64 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHC-S-------------------EEEEEESSCCCCHHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcC-C-------------------cEEEEECCCCCCHHHHHH
Confidence 45666554 689999999999999999999999999 222 2 233444333221222222
Q ss_pred HHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChH--HHHHHHHHHHhccC-CCEEEEeCCCCCCCH
Q 001041 479 NIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG--QKQRIAIARAILKD-PRILLLDEATSALDA 555 (1178)
Q Consensus 479 ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgG--qkqri~lARal~~~-~~illlDe~ts~lD~ 555 (1178)
.... ...+.++ ....+ .+. .++++ |+|+++.+|+++++ |+++++|||++.+|+
T Consensus 65 ~~~~--~~~~~~~------------~~~~~------~~~----~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~ 120 (220)
T 2cvh_A 65 MAET--RGLNPEE------------ALSRF------ILF----TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRA 120 (220)
T ss_dssp HHHT--TTCCHHH------------HHHHE------EEE----CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTG
T ss_pred HHHh--cCCChHH------------HhhcE------EEE----ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhh
Confidence 2211 0111111 11111 111 23444 47889999999986 999999999999997
Q ss_pred HhH-----H---HHHHHHHHHhc--CCeEEEEecCcc-------------hhh-ccCEEEEEeCC
Q 001041 556 ESE-----K---VVQEALDRIMV--NRTTVIVAHRLS-------------TVR-NADMIAVIHRG 596 (1178)
Q Consensus 556 ~~~-----~---~i~~~i~~~~~--~~t~i~itH~~~-------------~~~-~~d~i~~l~~G 596 (1178)
... + .+.+.++++.+ ++|+|+++|... .+. .||.|++|++.
T Consensus 121 ~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 121 EENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 532 2 34444555543 789999999765 333 59999999754
No 173
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.37 E-value=3.4e-14 Score=149.54 Aligned_cols=96 Identities=22% Similarity=0.318 Sum_probs=77.6
Q ss_pred eeCCCEEEEEcCCCCCHHHHHHHHhcccC-------------CCCCeEEECCcccCCCChHHHHHhcccccccccccccc
Q 001041 1068 IRAGKTVALVGESGSGKSTVVSLLQRFYD-------------PDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDT 1134 (1178)
Q Consensus 1068 I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~-------------p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gT 1134 (1178)
+++|++++||||||||||||+++|.|+|+ |..|. +||+|+..++.+.+|+.+ +|++++|++|
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~ 75 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAE 75 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeee
Confidence 46899999999999999999999999997 78897 699999999999999886 7999999999
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhccccccc
Q 001041 1135 IRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTS 1174 (1178)
Q Consensus 1135 IreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT 1174 (1178)
+++|+ || .++++++++++.+.+.-+ +-.|+|+++
T Consensus 76 ~~~n~-~g----~~~~~i~~~~~~~~~~~~-~~~~~g~~~ 109 (198)
T 1lvg_A 76 FSGNL-YG----TSKEAVRAVQAMNRICVL-DVDLQGVRS 109 (198)
T ss_dssp ETTEE-EE----EEHHHHHHHHHTTCEEEE-ECCHHHHHH
T ss_pred ecCcc-CC----CCHHHHHHHHHcCCcEEE-ECCHHHHHH
Confidence 99998 76 378899999986533222 224566654
No 174
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.37 E-value=1.9e-15 Score=171.22 Aligned_cols=153 Identities=20% Similarity=0.163 Sum_probs=107.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccC--------CCCCCcEEECCeecCCCC---------------HHHHhcceEEE---c
Q 001041 413 TTAALVGQSGSGKSTVISLIERFY--------DPQAGEVLIDGINLKEFQ---------------LQWIRKKIGLV---S 466 (1178)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g~~--------~~~~G~i~i~g~~~~~~~---------------~~~~r~~i~~v---~ 466 (1178)
++++|+|++|||||||++.|+|.. .|+.|+|.+||.++...+ ..+++..++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999997 789999999999987653 34567789988 7
Q ss_pred CCCC-CCcccHHHHHhcCCCCCCHHHHHHHH-HHhcHHHHHHhCCCCccchhcC-----CCCCCChHHHHHHHHHHHhcc
Q 001041 467 QEPV-LFTGSIKDNIAYGKDDATTEEIRVAT-ELANAAKFIDKLPQGIDTLVGE-----HGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 467 Q~~~-l~~~ti~~ni~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~g~~t~~~~-----~g~~lSgGqkqri~lARal~~ 539 (1178)
|++. .+..++.||..++.| ..+...+ ......+. ..+ ++.-+.++- .-.++|+||+||...+++++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p----~~~~~~~~~~~~~~~~-~~l-~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADP----GPIIQTFFSHEVLCQR-YLL-DGVIALVDAVHADEQMNQFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCH----HHHHHHHHHSHHHHHH-EEE-EEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCH----HHHHHHHhcCccccCe-EEE-CCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEEE
Confidence 8876 468899999987654 2221111 00000000 000 011111111 011589999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcc
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLS 582 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~ 582 (1178)
+|+++ ||| +.+.+.++++.++.|+++++|+..
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~ 190 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARINARAPVYTVTHGDI 190 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCC
T ss_pred CcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCC
Confidence 99877 888 566777777667889999999743
No 175
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.37 E-value=2.2e-15 Score=160.26 Aligned_cols=138 Identities=14% Similarity=0.176 Sum_probs=96.6
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcC-CCCC
Q 001041 409 ISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG-KDDA 487 (1178)
Q Consensus 409 i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~-~~~~ 487 (1178)
.++|++++|+||||||||||+++|.|+++|. | ..+++|+|+...++.+.++|+... ....
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC
Confidence 4689999999999999999999999999876 5 158889999888888887776311 0000
Q ss_pred CHHHHHHHHHHhcHHHHHHhCCCC--ccchhcCCCCCCChHHHHHHHHH-HHhccCCCEEEEeCCCCCCCHHhHHHHHHH
Q 001041 488 TTEEIRVATELANAAKFIDKLPQG--IDTLVGEHGTQLSGGQKQRIAIA-RAILKDPRILLLDEATSALDAESEKVVQEA 564 (1178)
Q Consensus 488 ~~~~~~~~~~~~~~~~~i~~~~~g--~~t~~~~~g~~lSgGqkqri~lA-Ral~~~~~illlDe~ts~lD~~~~~~i~~~ 564 (1178)
..+.+...+.+.+..++.| +++.+.+++..+|+||+||+++| |+++.++.++++|||... .
T Consensus 80 -----~~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~-----------~ 143 (208)
T 3c8u_A 80 -----PETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWR-----------D 143 (208)
T ss_dssp -----GGGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTGG-----------G
T ss_pred -----CchhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchhH-----------H
Confidence 0011111223334444444 66778899999999999999998 888888888888887420 0
Q ss_pred HHHHhcCCeEEEEecCcch
Q 001041 565 LDRIMVNRTTVIVAHRLST 583 (1178)
Q Consensus 565 i~~~~~~~t~i~itH~~~~ 583 (1178)
+...+ ..++.+.+..+.
T Consensus 144 l~~~~--d~~i~vd~~~~~ 160 (208)
T 3c8u_A 144 LTAIW--DVSIRLEVPMAD 160 (208)
T ss_dssp GGGTC--SEEEEECCCHHH
T ss_pred HHHhc--CEEEEEeCCHHH
Confidence 11111 356777777665
No 176
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.35 E-value=1.4e-14 Score=151.77 Aligned_cols=136 Identities=15% Similarity=0.082 Sum_probs=86.4
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCC
Q 001041 408 SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA 487 (1178)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~ 487 (1178)
.+++|++++|+||+|||||||+++|.|. +..|.|.++|.++..... .+..++|++|++. .+.|+.+|+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~~~~--- 76 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAADVA--- 76 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHHHHH---
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHHHHH---
Confidence 4789999999999999999999999998 678999999866532110 1234678888664 4567888876421
Q ss_pred CHHHHHHHHHHhcHHHHHHhCC--CCccchh--cCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHH
Q 001041 488 TTEEIRVATELANAAKFIDKLP--QGIDTLV--GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563 (1178)
Q Consensus 488 ~~~~~~~~~~~~~~~~~i~~~~--~g~~t~~--~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~ 563 (1178)
.. ... .+....++.+. .+++... +.....+|+||+||+++||++.++|+++ +|++..+.+.+
T Consensus 77 ---~~--~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 77 ---GR--YAK-EGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp ---HH--HHH-TSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred ---HH--Hhc-cCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 00 000 00000000000 0111111 3334579999999999999999999876 57765555554
Q ss_pred HH
Q 001041 564 AL 565 (1178)
Q Consensus 564 ~i 565 (1178)
.+
T Consensus 143 ~~ 144 (191)
T 1zp6_A 143 QF 144 (191)
T ss_dssp HT
T ss_pred HH
Confidence 44
No 177
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.33 E-value=4.8e-14 Score=163.31 Aligned_cols=113 Identities=24% Similarity=0.269 Sum_probs=97.0
Q ss_pred ccccceEEeeC--CCEEEEEcCCCCCHHHHHHHHhcccCCCC----CeEEE----CCcccCCCChHHHHHhccccccccc
Q 001041 1060 VFRDLNLKIRA--GKTVALVGESGSGKSTVVSLLQRFYDPDA----GHITL----DGVEIQKLQLKWLRQQMGLVSQEPV 1129 (1178)
Q Consensus 1060 vL~~isf~I~~--Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~----G~I~I----DG~dI~~i~l~~LR~~IsiV~Qdp~ 1129 (1178)
+.+.|+++|++ |+++||||+||||||||+++|.|+|+|++ |+|++ +|.++ .++..++ ++|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 46789999999 99999999999999999999999999999 99997 47777 6777777 66999999999
Q ss_pred cccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccc
Q 001041 1130 LFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSR 1175 (1178)
Q Consensus 1130 LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~ 1175 (1178)
+|++|+++||.++.. +..+..++......+...++..++.+++..
T Consensus 235 ~~~~t~~~nl~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 279 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDT-DFITTQAFCIQYEGKAHPFLDSMIKEYPFD 279 (365)
T ss_dssp HHHHHHCSSEEEESS-CHHHHHHHHHHHHSCCCHHHHHHHHHSCCS
T ss_pred HHHHhccCCEEEEeC-CchHHHHHHHHHcCCCCHHHHHHHhhcCCC
Confidence 999999999998743 456777777777778889999988764443
No 178
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.32 E-value=1.8e-13 Score=149.92 Aligned_cols=102 Identities=22% Similarity=0.306 Sum_probs=84.4
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCC-CCeEEECCcccCCCChHHHHHhc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPD-AGHITLDGVEIQKLQLKWLRQQM 1121 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~-~G~I~IDG~dI~~i~l~~LR~~I 1121 (1178)
++++|++|. ++|+|+| +++|+.++|+|||||||||++++|+|+++|+ +|+|.++|.|+..+. ++.+
T Consensus 6 ~~l~~l~~~-------~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~ 72 (261)
T 2eyu_A 6 PEFKKLGLP-------DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKK 72 (261)
T ss_dssp CCGGGSSCC-------THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSS
T ss_pred CChHHCCCH-------HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcc
Confidence 466777752 3999999 9999999999999999999999999999998 999999999987653 4557
Q ss_pred ccccc-----ccccccccHHHHHhcCCCCCC-------CHHHHHHHHHHc
Q 001041 1122 GLVSQ-----EPVLFNDTIRANIAYGKGGDA-------TEAEIQAASEMA 1159 (1178)
Q Consensus 1122 siV~Q-----dp~LF~gTIreNI~~g~~~~a-------sdeei~~Al~~A 1159 (1178)
++|+| ++..|..+|+.+|+.++ +. +.+.++++++.+
T Consensus 73 ~~v~q~~~gl~~~~l~~~la~aL~~~p--~illlDEp~D~~~~~~~l~~~ 120 (261)
T 2eyu_A 73 SIVNQREVGEDTKSFADALRAALREDP--DVIFVGEMRDLETVETALRAA 120 (261)
T ss_dssp SEEEEEEBTTTBSCHHHHHHHHHHHCC--SEEEESCCCSHHHHHHHHHHH
T ss_pred eeeeHHHhCCCHHHHHHHHHHHHhhCC--CEEEeCCCCCHHHHHHHHHHH
Confidence 88899 77788999999999863 33 666666666654
No 179
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.30 E-value=9.6e-14 Score=155.93 Aligned_cols=81 Identities=21% Similarity=0.268 Sum_probs=72.4
Q ss_pred ccccEEEeeeEEeCCCCCCccccccceEE-----------------------eeCCCEEEEEcCCCCCHHHHHHHHhccc
Q 001041 1039 VKGEIELHHVSFKYPSRPDVQVFRDLNLK-----------------------IRAGKTVALVGESGSGKSTVVSLLQRFY 1095 (1178)
Q Consensus 1039 ~~g~I~f~nVsf~Y~~~~~~~vL~~isf~-----------------------I~~Ge~vaIVG~SGSGKSTL~~lL~R~y 1095 (1178)
.++.|+++||++.|. |+++++++. +++|+.+||+|+||||||||+++|.+++
T Consensus 40 ~~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 40 LGEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp TTCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 456799999999993 478888875 8999999999999999999999999999
Q ss_pred CCCCCeEEECCcccCCCChHHHHHhccccccccccccccHHHHHhc
Q 001041 1096 DPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAY 1141 (1178)
Q Consensus 1096 ~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~ 1141 (1178)
+|..|. +++++|+||+++|..|+++|+.+
T Consensus 115 ~~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~ 143 (312)
T 3aez_A 115 ARWDHH-----------------PRVDLVTTDGFLYPNAELQRRNL 143 (312)
T ss_dssp HTSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTC
T ss_pred cccCCC-----------------CeEEEEecCccCCcccHHHHHHH
Confidence 998664 56899999999999999999975
No 180
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.28 E-value=2.2e-13 Score=159.84 Aligned_cols=98 Identities=17% Similarity=0.256 Sum_probs=84.8
Q ss_pred ccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCc---ccCCCC----
Q 001041 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGV---EIQKLQ---- 1113 (1178)
Q Consensus 1041 g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~---dI~~i~---- 1113 (1178)
+.++++||++.|.. +..||+++ |+|++||++||+|+||||||||+++|.|+++|++|.|.++|. +++++.
T Consensus 130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 45899999999963 34699999 999999999999999999999999999999999999999999 665542
Q ss_pred -hHHHHHhccccccc--cccccccHHHHHhc
Q 001041 1114 -LKWLRQQMGLVSQE--PVLFNDTIRANIAY 1141 (1178)
Q Consensus 1114 -l~~LR~~IsiV~Qd--p~LF~gTIreNI~~ 1141 (1178)
...+++.+++|+|+ |.+..-|+.+|+.+
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~ 237 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATR 237 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHH
Confidence 45688999999994 45567799999865
No 181
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.28 E-value=3.2e-12 Score=139.20 Aligned_cols=146 Identities=19% Similarity=0.287 Sum_probs=87.1
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhc--cCCC-----CCCcEEECCeecCC-CCHHHHhcceEEEcCCCCCCcccHHHH
Q 001041 408 SISSGTTAALVGQSGSGKSTVISLIER--FYDP-----QAGEVLIDGINLKE-FQLQWIRKKIGLVSQEPVLFTGSIKDN 479 (1178)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g--~~~~-----~~G~i~i~g~~~~~-~~~~~~r~~i~~v~Q~~~l~~~ti~~n 479 (1178)
-+++|++++|+||+|||||||++.|++ ..+| ..|.+++++.+.-. -....+.+++++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 489999999999999999999999999 4554 56778888754211 1122233455555543 4555
Q ss_pred HhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhc--cCCCEEEEeCCCCCCCHH-
Q 001041 480 IAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL--KDPRILLLDEATSALDAE- 556 (1178)
Q Consensus 480 i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~--~~~~illlDe~ts~lD~~- 556 (1178)
+.+..+ .+.++....+ .-+++++ .+|+++++|||++.+|+.
T Consensus 93 ~~~~~~-~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~lliiD~~~~~~~~~~ 136 (243)
T 1n0w_A 93 VAYARA-FNTDHQTQLL-----------------------------------YQASAMMVESRYALLIVDSATALYRTDY 136 (243)
T ss_dssp EEEEEC-CSHHHHHHHH-----------------------------------HHHHHHHHHSCEEEEEEETSSGGGC---
T ss_pred eEEEec-CCHHHHHHHH-----------------------------------HHHHHHHhcCCceEEEEeCchHHHHHHh
Confidence 544322 2222222111 1111111 589999999999999985
Q ss_pred ------hHH-----HHHHHHHHHh--cCCeEEEEecCcchh-------------------h-ccCEEEEEeCC
Q 001041 557 ------SEK-----VVQEALDRIM--VNRTTVIVAHRLSTV-------------------R-NADMIAVIHRG 596 (1178)
Q Consensus 557 ------~~~-----~i~~~i~~~~--~~~t~i~itH~~~~~-------------------~-~~d~i~~l~~G 596 (1178)
.++ .+.+.+..+. .++|+|+++|..... . .||.+++|+.|
T Consensus 137 ~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 137 SGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 322 2333344333 378999999965432 2 48999999865
No 182
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.27 E-value=7.3e-13 Score=152.82 Aligned_cols=95 Identities=22% Similarity=0.314 Sum_probs=81.7
Q ss_pred cccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCC-CCeEEECCcccCCCChHHHHHhcccccc-----cccccc
Q 001041 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPD-AGHITLDGVEIQKLQLKWLRQQMGLVSQ-----EPVLFN 1132 (1178)
Q Consensus 1059 ~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~-~G~I~IDG~dI~~i~l~~LR~~IsiV~Q-----dp~LF~ 1132 (1178)
++|++++ +++|+.++|||||||||||++++|+|+++|+ +|+|.++|.++. + .+|+.+++|+| ++..|+
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~ 199 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA 199 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence 3678776 8999999999999999999999999999998 899988877764 3 36788999999 999999
Q ss_pred ccHHHHHhcCCCCCC-------CHHHHHHHHHHcCc
Q 001041 1133 DTIRANIAYGKGGDA-------TEAEIQAASEMANA 1161 (1178)
Q Consensus 1133 gTIreNI~~g~~~~a-------sdeei~~Al~~A~~ 1161 (1178)
++|++||++++ +. +++.++.|++.++.
T Consensus 200 ~~l~~~L~~~p--d~illdE~~d~e~~~~~l~~~~~ 233 (372)
T 2ewv_A 200 DALRAALREDP--DVIFVGEMRDLETVETALRAAET 233 (372)
T ss_dssp HHHHHHTTSCC--SEEEESCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHhhhCc--CEEEECCCCCHHHHHHHHHHHhc
Confidence 99999999863 44 67778888887754
No 183
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.24 E-value=1e-13 Score=163.62 Aligned_cols=83 Identities=14% Similarity=0.132 Sum_probs=74.3
Q ss_pred ccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCC-e-EEECCcccCCCChHHHH
Q 001041 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG-H-ITLDGVEIQKLQLKWLR 1118 (1178)
Q Consensus 1041 g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G-~-I~IDG~dI~~i~l~~LR 1118 (1178)
+-|+++||+|+|+ ++||+|++|++++|+||||||||||+++|++++.|++| + |++|| | .|
T Consensus 117 ~mi~~~nl~~~y~---------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~ 178 (460)
T 2npi_A 117 TMKYIYNLHFMLE---------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQ 178 (460)
T ss_dssp THHHHHHHHHHHH---------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TT
T ss_pred chhhhhhhhehhh---------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------cc
Confidence 4588999999883 79999999999999999999999999999999999999 9 99999 2 37
Q ss_pred Hhcccccccccccc----ccHHHHHhcC
Q 001041 1119 QQMGLVSQEPVLFN----DTIRANIAYG 1142 (1178)
Q Consensus 1119 ~~IsiV~Qdp~LF~----gTIreNI~~g 1142 (1178)
+.+++|||++.+|. .|++||+ ++
T Consensus 179 ~~i~~vpq~~~l~~~~~~~tv~eni-~~ 205 (460)
T 2npi_A 179 QPIFTVPGCISATPISDILDAQLPT-WG 205 (460)
T ss_dssp SCSSSCSSCCEEEECCSCCCTTCTT-CS
T ss_pred CCeeeeccchhhcccccccchhhhh-cc
Confidence 88999999997664 4899999 76
No 184
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.23 E-value=6e-12 Score=146.75 Aligned_cols=150 Identities=21% Similarity=0.286 Sum_probs=102.4
Q ss_pred ccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCC----HHH--HhcceEEEcCCCCCC-cc
Q 001041 402 FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ----LQW--IRKKIGLVSQEPVLF-TG 474 (1178)
Q Consensus 402 l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~----~~~--~r~~i~~v~Q~~~l~-~~ 474 (1178)
-+++||++++|++++|+|+||||||||++.|.|++.+.+|+|.++|.|+.... +.. .|.+|+|++|++.++ ..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 35789999999999999999999999999999999999999999887765431 122 467899999998765 57
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchh-cCCC-----CCCChHHHHHHHHHHHhcc-CC-CEEEE
Q 001041 475 SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLV-GEHG-----TQLSGGQKQRIAIARAILK-DP-RILLL 546 (1178)
Q Consensus 475 ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~-~~~g-----~~lSgGqkqri~lARal~~-~~-~illl 546 (1178)
|+++|+.++... |.|..+ ..-| .++-.--+|++.++|++.. .| .++|.
T Consensus 363 tV~e~l~~a~~~------------------------~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLv 418 (503)
T 2yhs_A 363 VIFDAIQAAKAR------------------------NIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLT 418 (503)
T ss_dssp HHHHHHHHHHHT------------------------TCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEE
T ss_pred HHHHHHHHHHhc------------------------CCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEE
Confidence 899999864210 111111 1111 0111223578889998754 45 46666
Q ss_pred eCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEec
Q 001041 547 DEATSALDAESEKVVQEALDRIMVNRTTVIVAH 579 (1178)
Q Consensus 547 De~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH 579 (1178)
.||+++.|+... .+.+.+. .+.|.+++||
T Consensus 419 LDattGq~al~~---ak~f~~~-~~itgvIlTK 447 (503)
T 2yhs_A 419 IDASTGQNAVSQ---AKLFHEA-VGLTGITLTK 447 (503)
T ss_dssp EEGGGTHHHHHH---HHHHHHH-TCCSEEEEEC
T ss_pred ecCcccHHHHHH---HHHHHhh-cCCCEEEEEc
Confidence 668877554421 1112221 3679999999
No 185
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.19 E-value=7.7e-13 Score=132.95 Aligned_cols=86 Identities=15% Similarity=0.094 Sum_probs=70.3
Q ss_pred eEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcC
Q 001041 388 DVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQ 467 (1178)
Q Consensus 388 ~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q 467 (1178)
|++++|+ +..+++++||++++|++++|+||+|||||||+++|+|++ |.+|+|.++|.++.+. ...+ .+++|
T Consensus 12 ~~~~~~g---~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~---~~~~q 82 (158)
T 1htw_A 12 FSMLRFG---KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA---GKMIY 82 (158)
T ss_dssp HHHHHHH---HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET---TEEEE
T ss_pred HHHHHHH---HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC---Cccee
Confidence 4455563 246899999999999999999999999999999999999 9999999999877421 1111 27999
Q ss_pred CCCCCcccHHHHHhc
Q 001041 468 EPVLFTGSIKDNIAY 482 (1178)
Q Consensus 468 ~~~l~~~ti~~ni~~ 482 (1178)
++.++.-|+.||+.+
T Consensus 83 ~~~l~~ltv~e~l~~ 97 (158)
T 1htw_A 83 HFDLYRLADPEELEF 97 (158)
T ss_dssp EEECTTCSCTTHHHH
T ss_pred ccccccCCcHHHHHH
Confidence 998888899999853
No 186
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.19 E-value=4.3e-13 Score=152.72 Aligned_cols=178 Identities=15% Similarity=0.193 Sum_probs=115.4
Q ss_pred EEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCH----HHHhc
Q 001041 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL----QWIRK 460 (1178)
Q Consensus 385 ~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~----~~~r~ 460 (1178)
+++|+++.|. ...+|++++|++++|++++|+|++|||||||+++|.|++.|.+|+|.+.|.|+..... ...|.
T Consensus 31 e~~~~~~~~~---~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~ 107 (337)
T 2qm8_A 31 ESRRADHRAA---VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKT 107 (337)
T ss_dssp TCSSHHHHHH---HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGG
T ss_pred eeCCcccccC---hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhh
Confidence 3445555663 2358999999999999999999999999999999999999999999999988754321 23467
Q ss_pred ceEEEcCCCCCCc----------cc---HHHHHh-c---CCC---------CCCHHHHHHHHHH-------------hcH
Q 001041 461 KIGLVSQEPVLFT----------GS---IKDNIA-Y---GKD---------DATTEEIRVATEL-------------ANA 501 (1178)
Q Consensus 461 ~i~~v~Q~~~l~~----------~t---i~~ni~-~---~~~---------~~~~~~~~~~~~~-------------~~~ 501 (1178)
++++++|+|.+|. || ++|.+. + +.+ ..++..+.+.++. ..+
T Consensus 108 ~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i 187 (337)
T 2qm8_A 108 RMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGI 187 (337)
T ss_dssp GSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------C
T ss_pred hheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHH
Confidence 8999999998874 22 333321 0 000 0011111100000 000
Q ss_pred HHHHHhCCCCcc-chhcC-CCCCCChHHHHHHHHHHHhcc------CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh
Q 001041 502 AKFIDKLPQGID-TLVGE-HGTQLSGGQKQRIAIARAILK------DPRILLLDEATSALDAESEKVVQEALDRIM 569 (1178)
Q Consensus 502 ~~~i~~~~~g~~-t~~~~-~g~~lSgGqkqri~lARal~~------~~~illlDe~ts~lD~~~~~~i~~~i~~~~ 569 (1178)
.+.+...|+-+- +.+.. ....+|+|++|++..|++++. +|+++. +||+|.+....+.+.|.+..
T Consensus 188 ~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 188 KKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp CTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence 000111121000 11110 113478999999999999987 688876 99999999888888887653
No 187
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.17 E-value=3.7e-11 Score=139.24 Aligned_cols=74 Identities=27% Similarity=0.420 Sum_probs=67.0
Q ss_pred CCCChHHHHHH------HHHHHhccC-CCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEE
Q 001041 521 TQLSGGQKQRI------AIARAILKD-PRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVI 593 (1178)
Q Consensus 521 ~~lSgGqkqri------~lARal~~~-~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l 593 (1178)
..||||||||+ ++|||+..+ |++|||||||++||+.+...+.+.+.++.+++++|++||+++....||++++|
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l 358 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINV 358 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEE
Confidence 57999999988 668999999 99999999999999999999999998865567999999999866679999999
Q ss_pred e
Q 001041 594 H 594 (1178)
Q Consensus 594 ~ 594 (1178)
+
T Consensus 359 ~ 359 (371)
T 3auy_A 359 K 359 (371)
T ss_dssp E
T ss_pred E
Confidence 7
No 188
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.16 E-value=7.9e-12 Score=139.63 Aligned_cols=82 Identities=18% Similarity=0.259 Sum_probs=69.3
Q ss_pred cccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC----hHHH--HHhccccccccc-cc-c
Q 001041 1061 FRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ----LKWL--RQQMGLVSQEPV-LF-N 1132 (1178)
Q Consensus 1061 L~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~----l~~L--R~~IsiV~Qdp~-LF-~ 1132 (1178)
++++||++++|+.++||||+||||||+++.|++++.|++|+|.++|.|+.... +..+ |.+|++|+|++. ++ .
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 46789999999999999999999999999999999999999999999987653 3344 457999999997 65 5
Q ss_pred ccHHHHHhcC
Q 001041 1133 DTIRANIAYG 1142 (1178)
Q Consensus 1133 gTIreNI~~g 1142 (1178)
.|++||+.++
T Consensus 170 ~~v~e~l~~~ 179 (302)
T 3b9q_A 170 TVLSKAVKRG 179 (302)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6999999754
No 189
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.16 E-value=6.8e-14 Score=162.81 Aligned_cols=128 Identities=16% Similarity=0.157 Sum_probs=86.2
Q ss_pred cccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCC----CHHHHhcceEEEc---------C
Q 001041 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF----QLQWIRKKIGLVS---------Q 467 (1178)
Q Consensus 401 ~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~----~~~~~r~~i~~v~---------Q 467 (1178)
+|+++ + .++|++++|+||||||||||+++|+|+++|.+|+|.+.|.++... +...++.++++.+ |
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq 235 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQ 235 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGG
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhcc
Confidence 45555 3 378999999999999999999999999999999999988776321 1112344555544 9
Q ss_pred CCCCC--c-----ccHHHHHhcCCC--------C-CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHH
Q 001041 468 EPVLF--T-----GSIKDNIAYGKD--------D-ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1178)
Q Consensus 468 ~~~l~--~-----~ti~~ni~~~~~--------~-~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri 531 (1178)
+|-++ . .|+++|+.++.. . .+..+....+... |++... ...+|||||+||
T Consensus 236 ~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~l-----------gl~~~~--~~~~LSgg~~QR- 301 (418)
T 1p9r_A 236 DPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDM-----------GIEPFL--ISSSLLGVLAQR- 301 (418)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHH-----------TCCHHH--HHHHEEEEEEEE-
T ss_pred CCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHc-----------CCcHHH--HHHHHHHHHHHH-
Confidence 99652 2 488998875321 0 1112221122221 222211 235799999999
Q ss_pred HHHHHhccCCCEEE
Q 001041 532 AIARAILKDPRILL 545 (1178)
Q Consensus 532 ~lARal~~~~~ill 545 (1178)
|||+++.+|++..
T Consensus 302 -LaraL~~~p~~~~ 314 (418)
T 1p9r_A 302 -LVRTLCPDCKEPY 314 (418)
T ss_dssp -EEEEECTTTCEEE
T ss_pred -hhhhhcCCCCccC
Confidence 9999999999876
No 190
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.16 E-value=3.8e-15 Score=155.88 Aligned_cols=162 Identities=14% Similarity=0.060 Sum_probs=102.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCC-cccHHHHHhcCCCCCCHH
Q 001041 412 GTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYGKDDATTE 490 (1178)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~ni~~~~~~~~~~ 490 (1178)
|++++|+||+|||||||++.|.+ +.+|.+.++|.++... ..+++++|.+... ..++++|+.+..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~------ 66 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDLT------ 66 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHHH------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHHH------
Confidence 68999999999999999999997 5678999988544221 2456777755322 346777765310
Q ss_pred HHHHHHHHhcHHHHHHhCCCCccchhcC--------CCCCC--ChHHHHHHHHHH------HhccCCCEEEEeCCCCCCC
Q 001041 491 EIRVATELANAAKFIDKLPQGIDTLVGE--------HGTQL--SGGQKQRIAIAR------AILKDPRILLLDEATSALD 554 (1178)
Q Consensus 491 ~~~~~~~~~~~~~~i~~~~~g~~t~~~~--------~g~~l--SgGqkqri~lAR------al~~~~~illlDe~ts~lD 554 (1178)
+. ... .|.+..+.. .-..+ |+||+|++.++. +++.+++...+|+ ++|
T Consensus 67 ------~~-----~~~---~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld 129 (189)
T 2bdt_A 67 ------VN-----FLL---AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMG 129 (189)
T ss_dssp ------HH-----HHH---TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------C
T ss_pred ------HH-----HHh---cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCC
Confidence 00 000 011111100 00123 788888887777 7888888777784 789
Q ss_pred HHhHHHHHHHHHHHh-cCCeEEEEecC-cchhhc-cCEEEEEeCCEEEEecChhHHh
Q 001041 555 AESEKVVQEALDRIM-VNRTTVIVAHR-LSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608 (1178)
Q Consensus 555 ~~~~~~i~~~i~~~~-~~~t~i~itH~-~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 608 (1178)
+...+. .+.+.... .+.++|..+|. ++.+.. ||+|+ ++|+++..|+++-|.
T Consensus 130 ~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 130 ERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLE 183 (189)
T ss_dssp GGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC-------
T ss_pred HHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchh
Confidence 987666 66666653 35788889998 888865 99998 999999999987664
No 191
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.16 E-value=5.4e-12 Score=138.81 Aligned_cols=99 Identities=19% Similarity=0.135 Sum_probs=57.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccccccccccccc-cHHHHHhcCCCC--CCCH
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAYGKGG--DATE 1149 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~g-TIreNI~~g~~~--~asd 1149 (1178)
++|||||||||||||+++|+++..|++|+|.++|.++.. ...++.+++|+|++.++.. |+.||+.||... ....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 589999999999999999999999999999999998843 3456889999999988865 999999988531 1122
Q ss_pred HHHHHHHHHcCchHHHhhccccccc
Q 001041 1150 AEIQAASEMANAHKFICSLQQVRTS 1174 (1178)
Q Consensus 1150 eei~~Al~~A~~~dfI~~LP~gldT 1174 (1178)
+.+.+.++....+.....|..|-.-
T Consensus 81 ~~i~~~~~~~~~~~~~~~LS~G~~q 105 (270)
T 3sop_A 81 EPIEKYINEQYEKFLKEEVNIARKK 105 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCCS
T ss_pred HHHHHHHHHHHHhhhHHhcCcccch
Confidence 3455555533334445556555543
No 192
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.15 E-value=2.3e-11 Score=137.76 Aligned_cols=121 Identities=16% Similarity=0.141 Sum_probs=81.4
Q ss_pred cccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-CCCCcEEEC-CeecCCCCHHHHhcceEEEcCCCCCCc-ccHH
Q 001041 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-PQAGEVLID-GINLKEFQLQWIRKKIGLVSQEPVLFT-GSIK 477 (1178)
Q Consensus 401 ~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-~~~G~i~i~-g~~~~~~~~~~~r~~i~~v~Q~~~l~~-~ti~ 477 (1178)
-++++++. .+|++++|+||||||||||+++|+|+.. |..|+|.++ |.+.. ...+..+++++|+++++. -+++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccHH
Confidence 46777764 4899999999999999999999999999 999999987 65432 134568999999998874 5899
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHh
Q 001041 478 DNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1178)
Q Consensus 478 ~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal 537 (1178)
++-. ...+.+++... ..+.++.+ |+....+....+|| ||+||++||+++
T Consensus 280 e~~l---~~l~~~e~~~~-----~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 280 EFGL---WHLEPEQITQG-----FVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp TCCC---CCCCHHHHHHT-----SGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred Hhhh---cCCCHHHHHHH-----HHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 8533 23344443221 12223222 45555566677899 999999999986
No 193
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.15 E-value=1.9e-13 Score=163.39 Aligned_cols=171 Identities=14% Similarity=0.170 Sum_probs=112.2
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCc--ccHH
Q 001041 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT--GSIK 477 (1178)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~--~ti~ 477 (1178)
.+++++++.+++|+.++|+||||||||||+++|+|+++|.+|.|.++|.+--..+. +..++++.|.+. .. .|.+
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~-~~~~~~~~ 323 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGM-GEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCS-SSCCBCHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeeccc-ccCCcCHH
Confidence 46889999999999999999999999999999999999999999998865222221 345777887765 32 3677
Q ss_pred HHHhcC---CC------CCCHHHHHHHHHHhc-------------HHHHHH---hCCCCccchhc-------CCCCCCCh
Q 001041 478 DNIAYG---KD------DATTEEIRVATELAN-------------AAKFID---KLPQGIDTLVG-------EHGTQLSG 525 (1178)
Q Consensus 478 ~ni~~~---~~------~~~~~~~~~~~~~~~-------------~~~~i~---~~~~g~~t~~~-------~~g~~lSg 525 (1178)
+++... .| +....+...+++... ..+.+. ..|.|....+. .....+||
T Consensus 324 ~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~ 403 (511)
T 2oap_1 324 DLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRG 403 (511)
T ss_dssp HHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESS
T ss_pred HHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeC
Confidence 766422 12 234444444444321 122222 22233332221 12235799
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEE--EecCcchhhc
Q 001041 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVI--VAHRLSTVRN 586 (1178)
Q Consensus 526 Gqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~--itH~~~~~~~ 586 (1178)
|||||.++|. + | ++++|++..+.+.+.+.++. .++|+++ +||.++.+..
T Consensus 404 G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~ 455 (511)
T 2oap_1 404 NTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMAD 455 (511)
T ss_dssp SCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHH
T ss_pred CCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHH
Confidence 9999988752 1 6 99999987766555554443 3678774 7999987753
No 194
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.14 E-value=1.6e-12 Score=141.97 Aligned_cols=157 Identities=17% Similarity=0.198 Sum_probs=104.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHh---ccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCC-cccHHHHHhcC---
Q 001041 411 SGTTAALVGQSGSGKSTVISLIE---RFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYG--- 483 (1178)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~---g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~ni~~~--- 483 (1178)
++++++|+||+|||||||+++|. |+..|+.|+|.++|.+.. ..+...+.+++|++.++ ..++.+|+...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999 999999999988775432 12344567778877655 46888888541
Q ss_pred ----------CCCCCHHHHHHHHHHhcHHHHHHhCC-CC------------ccchhcCCCCCCChHHHHHHHHHHHh-cc
Q 001041 484 ----------KDDATTEEIRVATELANAAKFIDKLP-QG------------IDTLVGEHGTQLSGGQKQRIAIARAI-LK 539 (1178)
Q Consensus 484 ----------~~~~~~~~~~~~~~~~~~~~~i~~~~-~g------------~~t~~~~~g~~lSgGqkqri~lARal-~~ 539 (1178)
.+ ...++... +..+. -+ ++.........||| |+ ||+ +.
T Consensus 102 ~~~~~~il~g~~-~~~~~~~~----------l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~ 163 (246)
T 2bbw_A 102 RRGQHWLLDGFP-RTLGQAEA----------LDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFN 163 (246)
T ss_dssp CTTSCEEEESCC-CSHHHHHH----------HHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTS
T ss_pred cCCCeEEEECCC-CCHHHHHH----------HHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccC
Confidence 11 12211111 11111 11 11222344457898 55 788 99
Q ss_pred CCCEEEEe----CCCCCCCHHhHHHHHHHHHHHhcCC-eEEEEecCcchhhccCEEEEEeC
Q 001041 540 DPRILLLD----EATSALDAESEKVVQEALDRIMVNR-TTVIVAHRLSTVRNADMIAVIHR 595 (1178)
Q Consensus 540 ~~~illlD----e~ts~lD~~~~~~i~~~i~~~~~~~-t~i~itH~~~~~~~~d~i~~l~~ 595 (1178)
+|++++|| |||+++|..+...+.+.++.+.+.. ++ .......+++++++.
T Consensus 164 ~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~~~v------~~~~~~~~~~~~id~ 218 (246)
T 2bbw_A 164 PPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVAKPV------IELYKSRGVLHQFSG 218 (246)
T ss_dssp CCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHHHHH------HHHHHHTTCEEEEEC
T ss_pred CCcccccccccccccccCCCCcHHHHHHHHHHHHHhHHHH------HHHHhhcCcEEEECC
Confidence 99999999 9999999999988888887754321 11 112233456777764
No 195
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.13 E-value=2.2e-12 Score=149.35 Aligned_cols=92 Identities=23% Similarity=0.290 Sum_probs=74.8
Q ss_pred cccccceEEeeCCC--------------------EEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHH
Q 001041 1059 QVFRDLNLKIRAGK--------------------TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLR 1118 (1178)
Q Consensus 1059 ~vL~~isf~I~~Ge--------------------~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR 1118 (1178)
.+|+||||+|++|+ .+|||||||||||||+++|.|+++|++|+|.++|.++. |
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------~ 109 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------M 109 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------C
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------e
Confidence 58999999999999 99999999999999999999999999999999998864 1
Q ss_pred HhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchH
Q 001041 1119 QQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHK 1163 (1178)
Q Consensus 1119 ~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~d 1163 (1178)
.++|+|++...+-|++||+.++.. ++.+.++++..++.+
T Consensus 110 --~~~v~q~~~~~~ltv~D~~g~~~~----~~~~~~~L~~~~L~~ 148 (413)
T 1tq4_A 110 --ERHPYKHPNIPNVVFWDLPGIGST----NFPPDTYLEKMKFYE 148 (413)
T ss_dssp --CCEEEECSSCTTEEEEECCCGGGS----SCCHHHHHHHTTGGG
T ss_pred --eEEeccccccCCeeehHhhcccch----HHHHHHHHHHcCCCc
Confidence 288999986557899999977632 234666777766654
No 196
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.13 E-value=4.5e-11 Score=138.24 Aligned_cols=147 Identities=16% Similarity=0.238 Sum_probs=91.1
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHH--HhccCCCCCC-----cEEECCeecC-CCCHHHHhcceEEEcCCCCCCcccHHHH
Q 001041 408 SISSGTTAALVGQSGSGKSTVISL--IERFYDPQAG-----EVLIDGINLK-EFQLQWIRKKIGLVSQEPVLFTGSIKDN 479 (1178)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~--l~g~~~~~~G-----~i~i~g~~~~-~~~~~~~r~~i~~v~Q~~~l~~~ti~~n 479 (1178)
-|++|++++|+||+|||||||++. +.+..++..| .+++++.+.. ......+++++++.+| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 588999999999999999999994 4566665433 7888886531 1112233455666554 56777
Q ss_pred HhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHh--ccCCCEEEEeCCCCCCCHHh
Q 001041 480 IAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI--LKDPRILLLDEATSALDAES 557 (1178)
Q Consensus 480 i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal--~~~~~illlDe~ts~lD~~~ 557 (1178)
+.+..+. ..+.... .+.-++.+ -.+|+++++|||++.+|++.
T Consensus 247 i~~~~~~-~~~~~~~-----------------------------------~l~~~~~~l~~~~~~llVIDs~t~~~~~~~ 290 (400)
T 3lda_A 247 VAYARAY-NADHQLR-----------------------------------LLDAAAQMMSESRFSLIVVDSVMALYRTDF 290 (400)
T ss_dssp EEEEECC-SHHHHHH-----------------------------------HHHHHHHHHHHSCEEEEEEETGGGGCC---
T ss_pred EEEeccC-ChHHHHH-----------------------------------HHHHHHHHHHhcCCceEEecchhhhCchhh
Confidence 7765432 2222111 11111111 14799999999999999753
Q ss_pred H------------HHHHHHHHHHh--cCCeEEEEecCcc-------------------hhhc-cCEEEEEeCCE
Q 001041 558 E------------KVVQEALDRIM--VNRTTVIVAHRLS-------------------TVRN-ADMIAVIHRGK 597 (1178)
Q Consensus 558 ~------------~~i~~~i~~~~--~~~t~i~itH~~~-------------------~~~~-~d~i~~l~~G~ 597 (1178)
. ..+.+.|+++. .+.|+|+|+|... .+.+ +|.++.|++++
T Consensus 291 sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 291 SGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 2 34455555553 3789999999822 2333 78888887653
No 197
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.10 E-value=1.1e-11 Score=135.57 Aligned_cols=103 Identities=18% Similarity=0.196 Sum_probs=83.0
Q ss_pred cccccceEEeeCCCEEEEEcCCCCCHHHHHHHHh---cccCCCCCeEE--------ECCccc-CCCChHHHHHhcccccc
Q 001041 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQ---RFYDPDAGHIT--------LDGVEI-QKLQLKWLRQQMGLVSQ 1126 (1178)
Q Consensus 1059 ~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~---R~y~p~~G~I~--------IDG~dI-~~i~l~~LR~~IsiV~Q 1126 (1178)
+++++.+ ++|++|||+|++||||||++++|. |++.|++|.|. .+|.++ ....+..+++++++++|
T Consensus 18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 94 (252)
T 4e22_A 18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFV 94 (252)
T ss_dssp -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEE
T ss_pred hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEe
Confidence 4555554 899999999999999999999999 99999999999 999999 56678999999999995
Q ss_pred c------cccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhccccc
Q 001041 1127 E------PVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1127 d------p~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
+ .++++.++.+||+ .+++.+++..+..++.|.+....+
T Consensus 95 ~~~~~~~~~l~~~~v~~~i~--------~~~v~~~~s~~~~~~~vr~~l~~~ 138 (252)
T 4e22_A 95 SQNGQLQVILEGEDVSNEIR--------TETVGNTASQAAAFPRVREALLRR 138 (252)
T ss_dssp EETTEEEEEETTEECTTGGG--------SHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred cCCCCceEEECCeehhHHHH--------HHHHHHHHHHhcccHHHHHHHHHH
Confidence 4 5688888888874 246777777888888887665544
No 198
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.10 E-value=5.4e-11 Score=137.36 Aligned_cols=138 Identities=18% Similarity=0.232 Sum_probs=78.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc-cCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCC-cccHHHHHhcCCCCCCHHH
Q 001041 414 TAALVGQSGSGKSTVISLIER-FYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYGKDDATTEE 491 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g-~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~ni~~~~~~~~~~~ 491 (1178)
.+.|+||+|+||||+++++.| ++.|..|.+.++|.+...... .+..+++++|.+++. +.+- .+. .....
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~ 108 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RKLELNVVSSPYHLEITPSD-----MGN--NDRIV 108 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC-----------CCHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--ccceeeeecccceEEecHhh-----cCC--cchHH
Confidence 399999999999999999999 789999999999987654332 256799999988653 2110 010 11112
Q ss_pred HHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcC
Q 001041 492 IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVN 571 (1178)
Q Consensus 492 ~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~ 571 (1178)
+.+.++ +..... +++..+ .||| +..+|+++++|||++ ||+.+...+.+.+++..++
T Consensus 109 ~~~~i~-----~~~~~~--~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~ 164 (354)
T 1sxj_E 109 IQELLK-----EVAQME--QVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKN 164 (354)
T ss_dssp HHHHHH-----HHTTTT--C----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTT
T ss_pred HHHHHH-----HHHHhc--cccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCC
Confidence 222211 111111 122111 4666 678999999999999 9999999999999887677
Q ss_pred CeEEEEecCcchh
Q 001041 572 RTTVIVAHRLSTV 584 (1178)
Q Consensus 572 ~t~i~itH~~~~~ 584 (1178)
+++|++||+++.+
T Consensus 165 ~~~Il~t~~~~~l 177 (354)
T 1sxj_E 165 IRLIMVCDSMSPI 177 (354)
T ss_dssp EEEEEEESCSCSS
T ss_pred CEEEEEeCCHHHH
Confidence 8999999998754
No 199
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.10 E-value=2.2e-12 Score=146.85 Aligned_cols=87 Identities=14% Similarity=0.168 Sum_probs=76.2
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC----hHHHH
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ----LKWLR 1118 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~----l~~LR 1118 (1178)
|+.+|++++|. ...+|+++||++++|+.+||+|++|||||||++.|.+++.|++|+|.|.|.|+.+.. ....|
T Consensus 30 ie~~~~~~~~~---~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~ 106 (337)
T 2qm8_A 30 AESRRADHRAA---VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDK 106 (337)
T ss_dssp HTCSSHHHHHH---HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCG
T ss_pred HeeCCcccccC---hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHh
Confidence 56677888884 235999999999999999999999999999999999999999999999999986543 23468
Q ss_pred Hhcccccccccccc
Q 001041 1119 QQMGLVSQEPVLFN 1132 (1178)
Q Consensus 1119 ~~IsiV~Qdp~LF~ 1132 (1178)
+++++|+|++.+|.
T Consensus 107 ~~i~~v~q~~~~~~ 120 (337)
T 2qm8_A 107 TRMARLAIDRNAFI 120 (337)
T ss_dssp GGSTTGGGCTTEEE
T ss_pred hhheeeccCccccc
Confidence 89999999999985
No 200
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.09 E-value=2e-11 Score=138.83 Aligned_cols=81 Identities=19% Similarity=0.276 Sum_probs=69.7
Q ss_pred ccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC----hHHH--HHhccccccccc-cc-cc
Q 001041 1062 RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ----LKWL--RQQMGLVSQEPV-LF-ND 1133 (1178)
Q Consensus 1062 ~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~----l~~L--R~~IsiV~Qdp~-LF-~g 1133 (1178)
+.+||++++|+.++|||++||||||+++.|++++.|++|+|.++|.|+.... +..+ |..|++|+|++. ++ ..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 4578899999999999999999999999999999999999999999986653 3333 568999999987 54 66
Q ss_pred cHHHHHhcC
Q 001041 1134 TIRANIAYG 1142 (1178)
Q Consensus 1134 TIreNI~~g 1142 (1178)
|+++||.++
T Consensus 228 tv~e~l~~~ 236 (359)
T 2og2_A 228 VLSKAVKRG 236 (359)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 999999764
No 201
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.09 E-value=7.3e-12 Score=141.14 Aligned_cols=92 Identities=23% Similarity=0.359 Sum_probs=78.9
Q ss_pred cccEEEeeeEEeCCCCCCccccccceEEe-------------------eCCCEEEEEcCCCCCHHHHHHHHhcccC--CC
Q 001041 1040 KGEIELHHVSFKYPSRPDVQVFRDLNLKI-------------------RAGKTVALVGESGSGKSTVVSLLQRFYD--PD 1098 (1178)
Q Consensus 1040 ~g~I~f~nVsf~Y~~~~~~~vL~~isf~I-------------------~~Ge~vaIVG~SGSGKSTL~~lL~R~y~--p~ 1098 (1178)
++.|+++||++.|. +++++|+|++ ++|+.+||+|++|||||||+++|.+++. |+
T Consensus 35 ~~~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~ 109 (308)
T 1sq5_A 35 NEDLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE 109 (308)
T ss_dssp CTTCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT
T ss_pred ccccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC
Confidence 56799999999992 5999999998 9999999999999999999999999998 99
Q ss_pred CCeEEE---CCcccCCCChHHHHHhccccccccccc-cccHHHHHhc
Q 001041 1099 AGHITL---DGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAY 1141 (1178)
Q Consensus 1099 ~G~I~I---DG~dI~~i~l~~LR~~IsiV~Qdp~LF-~gTIreNI~~ 1141 (1178)
+|+|.+ ||.+.. ...|+.+++| |+.-++ .-|+.+|+.+
T Consensus 110 ~G~i~vi~~d~~~~~----~~~~~~~~~v-q~~~~~~~~~~~~~~~~ 151 (308)
T 1sq5_A 110 HRRVELITTDGFLHP----NQVLKERGLM-KKKGFPESYDMHRLVKF 151 (308)
T ss_dssp CCCEEEEEGGGGBCC----HHHHHHHTCT-TCTTSGGGBCHHHHHHH
T ss_pred CCeEEEEecCCccCc----HHHHHhCCEe-ecCCCCCCccHHHHHHH
Confidence 999999 998852 3467889999 776553 4478888764
No 202
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.08 E-value=1.1e-10 Score=116.38 Aligned_cols=91 Identities=18% Similarity=0.241 Sum_probs=66.6
Q ss_pred cccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCC--cEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHH
Q 001041 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG--EVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKD 478 (1178)
Q Consensus 401 ~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G--~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ 478 (1178)
+|+++ +|+.++|+||+|||||||++++.+++.+ +| .+++++.++.. .
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~--------------------~----- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPL--------------------T----- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCC--------------------C-----
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhH--------------------H-----
Confidence 45665 8999999999999999999999999876 46 44444322110 0
Q ss_pred HHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhH
Q 001041 479 NIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558 (1178)
Q Consensus 479 ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~ 558 (1178)
+++.+|++|+||||++ +|...+
T Consensus 79 ---------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~ 100 (149)
T 2kjq_A 79 ---------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQ 100 (149)
T ss_dssp ---------------------------------------------------------GGGGGCSEEEEESTTC-CCSHHH
T ss_pred ---------------------------------------------------------HHHhCCCEEEEeCccc-cChHHH
Confidence 2356899999999998 665557
Q ss_pred HHHHHHHHHHh-cCCe-EEEEecC
Q 001041 559 KVVQEALDRIM-VNRT-TVIVAHR 580 (1178)
Q Consensus 559 ~~i~~~i~~~~-~~~t-~i~itH~ 580 (1178)
..+.+.+.... ++++ +|++||+
T Consensus 101 ~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 101 ALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHHHHHHHHHHHcCCcEEEEECCC
Confidence 77778776654 3577 6776764
No 203
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.08 E-value=1.8e-10 Score=129.77 Aligned_cols=144 Identities=18% Similarity=0.128 Sum_probs=95.2
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHH----HHhc--ceEEEcCCCCCC-cccHHHHHh
Q 001041 409 ISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ----WIRK--KIGLVSQEPVLF-TGSIKDNIA 481 (1178)
Q Consensus 409 i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~----~~r~--~i~~v~Q~~~l~-~~ti~~ni~ 481 (1178)
.++|++++|+|||||||||+++.|.|++.|.+|+|.++|.|+...... .+++ .+.+++|++.++ ..++++|+.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence 468999999999999999999999999999999999999998766533 2233 456999998777 468999997
Q ss_pred cCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHH
Q 001041 482 YGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVV 561 (1178)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i 561 (1178)
++.. +.. +.+ =+||. |.. ..-..=.++.-.++|++..++++++||.++. .| +
T Consensus 206 ~~~~-----------~~~---d~v-----liDta-G~~-~~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~------~ 257 (328)
T 3e70_C 206 HAKA-----------RGI---DVV-----LIDTA-GRS-ETNRNLMDEMKKIARVTKPNLVIFVGDALAG-NA------I 257 (328)
T ss_dssp HHHH-----------HTC---SEE-----EEEEC-CSC-CTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-TH------H
T ss_pred HHHh-----------ccc---hhh-----HHhhc-cch-hHHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HH------H
Confidence 5310 000 000 01221 110 0011123444558999988888888885554 22 2
Q ss_pred HHHHHHHh--cCCeEEEEecC
Q 001041 562 QEALDRIM--VNRTTVIVAHR 580 (1178)
Q Consensus 562 ~~~i~~~~--~~~t~i~itH~ 580 (1178)
.+.++.+. .+.|.|++||-
T Consensus 258 ~~~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 258 VEQARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp HHHHHHHHHHSCCCEEEEECG
T ss_pred HHHHHHHHHhcCCCEEEEeCc
Confidence 22222222 36899999994
No 204
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.08 E-value=2.6e-11 Score=141.40 Aligned_cols=81 Identities=21% Similarity=0.288 Sum_probs=70.0
Q ss_pred ccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC----hHH--HHHhccccccccccc-ccc
Q 001041 1062 RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ----LKW--LRQQMGLVSQEPVLF-NDT 1134 (1178)
Q Consensus 1062 ~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~----l~~--LR~~IsiV~Qdp~LF-~gT 1134 (1178)
+++||++++|+.++|||++||||||+++.|.+++.|++|+|.++|.|+.... +.. .|++|++|+|++.++ ..|
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~t 363 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASV 363 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHH
Confidence 5789999999999999999999999999999999999999999988875431 223 478899999998754 679
Q ss_pred HHHHHhcC
Q 001041 1135 IRANIAYG 1142 (1178)
Q Consensus 1135 IreNI~~g 1142 (1178)
+++||.++
T Consensus 364 V~e~l~~a 371 (503)
T 2yhs_A 364 IFDAIQAA 371 (503)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999864
No 205
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.07 E-value=6.8e-12 Score=132.28 Aligned_cols=63 Identities=11% Similarity=0.161 Sum_probs=51.5
Q ss_pred ccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcccccccc
Q 001041 1058 VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEP 1128 (1178)
Q Consensus 1058 ~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp 1128 (1178)
.++|+|| ++||.+||+||+|||||||+++|.++ +|++|+|. +.++.. +...+|++|++|||++
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~ 75 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL 75 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC--
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH
Confidence 3589996 99999999999999999999999999 99999994 344432 3335688999999998
No 206
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.07 E-value=6e-12 Score=145.24 Aligned_cols=89 Identities=24% Similarity=0.244 Sum_probs=65.1
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCE--EEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHH
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKT--VALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ 1119 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~--vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~ 1119 (1178)
.+++++ +++|++ .+ |+|+||+|++|+. +|||||||||||||+++|+|+. ++|.++........|+
T Consensus 16 ~l~~~~-~~~y~~---~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~ 82 (427)
T 2qag_B 16 TVPLAG-HVGFDS---LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQ 82 (427)
T ss_dssp -CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEE
T ss_pred eEEEee-EEEECC---ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEe
Confidence 466777 788853 35 9999999999999 9999999999999999999983 5677776555555577
Q ss_pred hccccccccccc-cccHHHHHhcCC
Q 001041 1120 QMGLVSQEPVLF-NDTIRANIAYGK 1143 (1178)
Q Consensus 1120 ~IsiV~Qdp~LF-~gTIreNI~~g~ 1143 (1178)
.+++|+|++.++ +-|+.||+.||.
T Consensus 83 ~i~~v~Q~~~l~~~ltv~D~~~~g~ 107 (427)
T 2qag_B 83 SNTYDLQESNVRLKLTIVSTVGFGD 107 (427)
T ss_dssp EEEEEEEC--CEEEEEEEEEECCCC
T ss_pred eEEEEeecCccccccchhhhhhhhh
Confidence 899999999887 569999999884
No 207
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.04 E-value=1.2e-11 Score=131.07 Aligned_cols=75 Identities=20% Similarity=0.193 Sum_probs=48.7
Q ss_pred ccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC-hHHHHHhccccccccccccc-cH
Q 001041 1058 VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ-LKWLRQQMGLVSQEPVLFND-TI 1135 (1178)
Q Consensus 1058 ~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~-l~~LR~~IsiV~Qdp~LF~g-TI 1135 (1178)
.+||+| .+|++||.+||+||||||||||+++|.++++ .|.+++ ++...+ ....|+.+++++|++.+|.. |+
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~-~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 81 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSV-SATTRAPRPGEVDGVDYHFIDPTRFQQLID 81 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST----TCEECC-CEESSCCCTTCCBTTTBEECCHHHHHHHHH
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC----ceEEcc-cccccCCcccccCCCeeEecCHHHHHHHHh
Confidence 368999 7999999999999999999999999999995 355554 222221 12346789999999988753 45
Q ss_pred HHHH
Q 001041 1136 RANI 1139 (1178)
Q Consensus 1136 reNI 1139 (1178)
++|+
T Consensus 82 ~~~l 85 (207)
T 1znw_A 82 QGEL 85 (207)
T ss_dssp TTCE
T ss_pred cCCc
Confidence 5554
No 208
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.01 E-value=5.4e-11 Score=133.50 Aligned_cols=106 Identities=16% Similarity=0.142 Sum_probs=72.8
Q ss_pred EEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEE---CCcccCCCChHHHHHhccccccccc-------------
Q 001041 1066 LKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITL---DGVEIQKLQLKWLRQQMGLVSQEPV------------- 1129 (1178)
Q Consensus 1066 f~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~I---DG~dI~~i~l~~LR~~IsiV~Qdp~------------- 1129 (1178)
|++.+|+.++|+||||||||||+++|.++..|++|+|.+ +|.++........++++++|+|+|-
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456789999999999999999999999999999999999 9999876542211247999999985
Q ss_pred ---cc-cccHHHHHhcCCCC--CCCHHHHHHHHHHcCc-hHHHhhccccc
Q 001041 1130 ---LF-NDTIRANIAYGKGG--DATEAEIQAASEMANA-HKFICSLQQVR 1172 (1178)
Q Consensus 1130 ---LF-~gTIreNI~~g~~~--~asdeei~~Al~~A~~-~dfI~~LP~gl 1172 (1178)
|| +-|+ +|++|+... ...+..+.++++..++ .+...+.|.-+
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~l 292 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVKMF 292 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHHHH
Confidence 34 3477 999885321 1234579999999999 47777777543
No 209
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.00 E-value=6.4e-11 Score=129.02 Aligned_cols=71 Identities=17% Similarity=0.136 Sum_probs=50.8
Q ss_pred CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccccccccccccccHH
Q 001041 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIR 1136 (1178)
Q Consensus 1057 ~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIr 1136 (1178)
+.++|+||||++++|+.+||+||+||||||++++|.+++ |.+.+| .+++.+++|+||++...-|.+
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHh
Confidence 456999999999999999999999999999999999987 777665 357889999999854456899
Q ss_pred HHHhc
Q 001041 1137 ANIAY 1141 (1178)
Q Consensus 1137 eNI~~ 1141 (1178)
+|+++
T Consensus 77 ~~~~~ 81 (245)
T 2jeo_A 77 QKAKA 81 (245)
T ss_dssp HHHHH
T ss_pred Hhhhh
Confidence 99864
No 210
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.00 E-value=2.2e-10 Score=118.43 Aligned_cols=111 Identities=17% Similarity=0.204 Sum_probs=74.3
Q ss_pred eEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCC
Q 001041 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKD 485 (1178)
Q Consensus 406 ~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~ 485 (1178)
++.+++|+.++|+||+|||||||++++.+.+.|..|.. +.|+ +..+.+
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~------------------~~~~---------~~~~~~----- 79 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR------------------GYFF---------DTKDLI----- 79 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC------------------CCEE---------EHHHHH-----
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe------------------EEEE---------EHHHHH-----
Confidence 46778899999999999999999999999987666631 1111 111111
Q ss_pred CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC-CCCHHhHHHHHHH
Q 001041 486 DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS-ALDAESEKVVQEA 564 (1178)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts-~lD~~~~~~i~~~ 564 (1178)
..+. ..... + . .. -....+.+|++|+||||++ ++|+.....+.+.
T Consensus 80 --------~~~~-----~~~~~---~------~----~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~l 125 (180)
T 3ec2_A 80 --------FRLK-----HLMDE---G------K----DT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYI 125 (180)
T ss_dssp --------HHHH-----HHHHH---T------C----CS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHH
T ss_pred --------HHHH-----HHhcC---c------h----HH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHH
Confidence 0000 00100 0 0 00 0112245899999999996 8999988888888
Q ss_pred HHHHh-cCCeEEEEecCcc
Q 001041 565 LDRIM-VNRTTVIVAHRLS 582 (1178)
Q Consensus 565 i~~~~-~~~t~i~itH~~~ 582 (1178)
+.... +++++|++||...
T Consensus 126 l~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 126 ITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHHHHHTTCEEEEECCCCS
T ss_pred HHHHHHcCCCEEEEcCCCh
Confidence 87664 6789999999864
No 211
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.97 E-value=3.3e-10 Score=126.51 Aligned_cols=73 Identities=18% Similarity=0.241 Sum_probs=62.5
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC----hHHH--HHhcccccccccccc-ccHHHHHhc
Q 001041 1069 RAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ----LKWL--RQQMGLVSQEPVLFN-DTIRANIAY 1141 (1178)
Q Consensus 1069 ~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~----l~~L--R~~IsiV~Qdp~LF~-gTIreNI~~ 1141 (1178)
++|+.++|||||||||||+++.|.+++.|++|+|.++|.|+.... +..+ |..+++|+|++.++. .|+++|+.+
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA 179 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence 378999999999999999999999999999999999999997654 2333 467999999998775 478899864
No 212
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.97 E-value=4.9e-11 Score=133.75 Aligned_cols=115 Identities=17% Similarity=0.087 Sum_probs=73.8
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEE---CCeecCCCCHHHHh-cceEEEcCCCCCC------cccHH
Q 001041 408 SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI---DGINLKEFQLQWIR-KKIGLVSQEPVLF------TGSIK 477 (1178)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i---~g~~~~~~~~~~~r-~~i~~v~Q~~~l~------~~ti~ 477 (1178)
.+.+|++++++||||||||||+++|. +.+|..|+|.+ +|.++..... ..+ ..++|++|+|.+. .-|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 45579999999999999999999999 99999999999 9988765432 222 3699999999653 4578
Q ss_pred HHH--hcCC--------CC-----CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHH
Q 001041 478 DNI--AYGK--------DD-----ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1178)
Q Consensus 478 ~ni--~~~~--------~~-----~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lAR 535 (1178)
+|+ .|+. .. ....++.++++..++.+. ........|||.+++++.|||
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~----------~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCE----------RYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHH----------HHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHH----------HHHHHHHHHHHHHHHHHHHhc
Confidence 888 4430 00 111234444444433220 122223468998888899987
No 213
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.96 E-value=1e-12 Score=145.35 Aligned_cols=129 Identities=16% Similarity=0.164 Sum_probs=94.7
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCC-CCC-cccHH
Q 001041 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEP-VLF-TGSIK 477 (1178)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~-~l~-~~ti~ 477 (1178)
.+++++++.+++| ++|+||+|||||||+++|.|++.+ |.|.++|.++........++++++++|++ ..+ .-++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 4789999999999 999999999999999999999877 79999998887666666677899999986 333 34677
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC
Q 001041 478 DNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 551 (1178)
Q Consensus 478 ~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts 551 (1178)
||+....+.....+.. . ....+.+....|||||+||..+++|+..+|++| |||+.
T Consensus 110 Deid~~~~~r~~~~~~-------------~----~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 110 DEVDALCPRRSDRETG-------------A----SVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp ETCTTTCC--------------------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred ehhhhhhcccCCCcch-------------H----HHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhc
Confidence 8887643321111000 0 001111112358999999999999999999974 99975
No 214
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.93 E-value=1.3e-11 Score=139.17 Aligned_cols=140 Identities=18% Similarity=0.196 Sum_probs=96.0
Q ss_pred cccEEEEeEEEECCCCCCCccccceeEEE-------------------eCCCEEEEEcCCCCcHHHHHHHHhccCC--CC
Q 001041 381 RGDIELRDVYFSYPARPNEQIFSGFSISI-------------------SSGTTAALVGQSGSGKSTVISLIERFYD--PQ 439 (1178)
Q Consensus 381 ~~~i~~~~~~~~y~~~~~~~~l~~i~l~i-------------------~~g~~~~ivG~~GsGKStl~~~l~g~~~--~~ 439 (1178)
.+.|+++||++.|. ++++++++.+ ++|++++|+|++|||||||+++|.|++. |+
T Consensus 35 ~~~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~ 109 (308)
T 1sq5_A 35 NEDLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE 109 (308)
T ss_dssp CTTCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT
T ss_pred ccccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC
Confidence 35688999999992 5899999988 8999999999999999999999999998 99
Q ss_pred CCcEEE---CCeecCCCCHHHHhcceEEEcCCCCCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccch
Q 001041 440 AGEVLI---DGINLKEFQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTL 515 (1178)
Q Consensus 440 ~G~i~i---~g~~~~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~ 515 (1178)
+|+|.+ ||.+.. . ..++.++++ |+..++ .-|+.+|+.+.. .+..|.. .
T Consensus 110 ~G~i~vi~~d~~~~~---~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~~----------------------~l~~~~~-~ 161 (308)
T 1sq5_A 110 HRRVELITTDGFLHP---N-QVLKERGLM-KKKGFPESYDMHRLVKFVS----------------------DLKSGVP-N 161 (308)
T ss_dssp CCCEEEEEGGGGBCC---H-HHHHHHTCT-TCTTSGGGBCHHHHHHHHH----------------------HHTTTCS-C
T ss_pred CCeEEEEecCCccCc---H-HHHHhCCEe-ecCCCCCCccHHHHHHHHH----------------------HHhCCCC-c
Confidence 999999 887642 2 345678888 765443 346666665321 0111111 0
Q ss_pred hcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 001041 516 VGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555 (1178)
Q Consensus 516 ~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~ 555 (1178)
+.-.-.+.+.+ +|+..+.+...+++++|+|.|....|.
T Consensus 162 i~~P~~~~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 162 VTAPVYSHLIY--DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp EEECCEETTTT--EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred eeccccccccc--CcccccceecCCCCEEEECchhhCCCc
Confidence 00001112222 333333355678999999999987774
No 215
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.93 E-value=3.8e-11 Score=147.45 Aligned_cols=96 Identities=18% Similarity=0.248 Sum_probs=60.5
Q ss_pred cEEEeeeEEeCCCCCCccccccc----------eEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCC-CCCeEEECCcccC
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDL----------NLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP-DAGHITLDGVEIQ 1110 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~i----------sf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p-~~G~I~IDG~dI~ 1110 (1178)
.|+++|+++.|+.. -.++|+.+ +|++|. +||||+||||||||+++|.|++.| ++|.|+++|.++.
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 48999999999632 23455555 377775 999999999999999999999989 7999999999963
Q ss_pred CC---ChHHHHHhccccccccccc-cccHHHHHhc
Q 001041 1111 KL---QLKWLRQQMGLVSQEPVLF-NDTIRANIAY 1141 (1178)
Q Consensus 1111 ~i---~l~~LR~~IsiV~Qdp~LF-~gTIreNI~~ 1141 (1178)
.. ....+|++|++|+|++.++ ..|+++||.+
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~ 120 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINK 120 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHH
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHH
Confidence 22 2457889999999999876 4699999864
No 216
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.89 E-value=3.1e-10 Score=120.53 Aligned_cols=78 Identities=12% Similarity=0.079 Sum_probs=60.1
Q ss_pred eeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccccccccccccc---cHHHHHhc--C
Q 001041 1068 IRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND---TIRANIAY--G 1142 (1178)
Q Consensus 1068 I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~g---TIreNI~~--g 1142 (1178)
.++|+++||+|++|||||||+++|.+++.| ++++|+||+++|+. |+++|+.+ +
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 579999999999999999999999999975 68999999999854 56666554 3
Q ss_pred CCCCCCHHHHHHHHHHcCchHHHhh
Q 001041 1143 KGGDATEAEIQAASEMANAHKFICS 1167 (1178)
Q Consensus 1143 ~~~~asdeei~~Al~~A~~~dfI~~ 1167 (1178)
.+.....+.+.++++..++.+++..
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~~~~ 85 (211)
T 3asz_A 61 HPDAFDLALYLEHAQALLRGLPVEM 85 (211)
T ss_dssp SGGGBCHHHHHHHHHHHHTTCCEEE
T ss_pred ChhhhhHHHHHHHHHHHHcCCCcCC
Confidence 2223455778888888777766544
No 217
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.88 E-value=3.6e-10 Score=132.74 Aligned_cols=80 Identities=16% Similarity=0.168 Sum_probs=64.1
Q ss_pred EEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHH-------
Q 001041 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW------- 1116 (1178)
Q Consensus 1044 ~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~------- 1116 (1178)
.+.++++.+ ..+|+|+||+|++ |.+||+||||||||||+++|.|+++|++|+|.++|.++...+...
T Consensus 8 ~l~~l~~~~-----~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~r~~~~~~ 81 (483)
T 3euj_A 8 KFRSLTLIN-----WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTSSSRDKGLYG 81 (483)
T ss_dssp EEEEEEEEE-----ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCCCCSSCCSCGG
T ss_pred ceeEEEEec-----cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCchhHHhHHHHH
Confidence 455666533 2389999999999 999999999999999999999999999999999999998765432
Q ss_pred -HHHhccccccccc
Q 001041 1117 -LRQQMGLVSQEPV 1129 (1178)
Q Consensus 1117 -LR~~IsiV~Qdp~ 1129 (1178)
++..+.++.|++.
T Consensus 82 ~~~~~~~~~~~~~~ 95 (483)
T 3euj_A 82 KLKAGVCYAVLETV 95 (483)
T ss_dssp GSCSSEEEEEEEEE
T ss_pred hcCCCceEEEEehh
Confidence 2233466666654
No 218
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.87 E-value=6.6e-10 Score=115.07 Aligned_cols=82 Identities=22% Similarity=0.347 Sum_probs=68.3
Q ss_pred EEeeCCCEEEEEcCCCCCHHHHHHHHhcccC-------------CCCCeEEECCcccCCCChHHHHHhcccccccccccc
Q 001041 1066 LKIRAGKTVALVGESGSGKSTVVSLLQRFYD-------------PDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFN 1132 (1178)
Q Consensus 1066 f~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~-------------p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~ 1132 (1178)
+..-+|+.++|+||||||||||+++|++.++ |..|+ +||+|..-++.+.+++.+ .|+.+|+.
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle~ 88 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLEF 88 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEEE
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhhh
Confidence 3445899999999999999999999999986 77887 899999999999999876 59999999
Q ss_pred ccHHHHHhcCCCCCCCHHHHHHHHH
Q 001041 1133 DTIRANIAYGKGGDATEAEIQAASE 1157 (1178)
Q Consensus 1133 gTIreNI~~g~~~~asdeei~~Al~ 1157 (1178)
+++.+|. ||. +.+.+.++++
T Consensus 89 ~~~~~n~-YGt----~~~~v~~~l~ 108 (197)
T 3ney_A 89 GSYQGNM-FGT----KFETVHQIHK 108 (197)
T ss_dssp EEETTEE-EEE----EHHHHHHHHH
T ss_pred hhhhcee-ccc----chhhHHHHHh
Confidence 9999995 883 3444555544
No 219
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.85 E-value=2.3e-10 Score=122.99 Aligned_cols=96 Identities=19% Similarity=0.228 Sum_probs=81.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhccc---CCCCCeEEE--------CCcccC-CCChHHHHHhcccccccc------cccc
Q 001041 1071 GKTVALVGESGSGKSTVVSLLQRFY---DPDAGHITL--------DGVEIQ-KLQLKWLRQQMGLVSQEP------VLFN 1132 (1178)
Q Consensus 1071 Ge~vaIVG~SGSGKSTL~~lL~R~y---~p~~G~I~I--------DG~dI~-~i~l~~LR~~IsiV~Qdp------~LF~ 1132 (1178)
+.++||+|++||||||++++|.+.| .++.|.|.. +|.|+. +..+.++++++++++|++ .++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 5789999999999999999999888 788999988 788876 367788999999999987 6677
Q ss_pred ccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhccccccc
Q 001041 1133 DTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTS 1174 (1178)
Q Consensus 1133 gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT 1174 (1178)
.++.+|+ .++++.+++..+.+|++|...+.++++
T Consensus 85 ~~v~~~~--------~~~~~~~~~~~~~~~~~v~~~~~~~~~ 118 (227)
T 1cke_A 85 EDVSGEI--------RTQEVANAASQVAAFPRVREALLRRQR 118 (227)
T ss_dssp EECHHHH--------TSHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred eeCchhh--------CCHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 7888876 246899999999999999987766543
No 220
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.84 E-value=5.8e-10 Score=124.98 Aligned_cols=101 Identities=15% Similarity=0.124 Sum_probs=70.3
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEE---CCcccCCCChHHHH-Hhcccccccccc------ccccHH
Q 001041 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITL---DGVEIQKLQLKWLR-QQMGLVSQEPVL------FNDTIR 1136 (1178)
Q Consensus 1067 ~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~I---DG~dI~~i~l~~LR-~~IsiV~Qdp~L------F~gTIr 1136 (1178)
++.+|++++|+|+||||||||+++|. +.+|++|+|.+ +|.++..... ..+ +.+++|+|+|-+ .+-|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 45579999999999999999999999 99999999999 9999876542 222 379999999954 24578
Q ss_pred HHH--hcC---------C---CCCCCHHHHHHHHHHcCchH-HHhhccc
Q 001041 1137 ANI--AYG---------K---GGDATEAEIQAASEMANAHK-FICSLQQ 1170 (1178)
Q Consensus 1137 eNI--~~g---------~---~~~asdeei~~Al~~A~~~d-fI~~LP~ 1170 (1178)
+|+ .|+ + .....++.+.+|++..++.+ ...+.|.
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~ 286 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLK 286 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHH
Confidence 888 443 0 11122456899999999875 5555443
No 221
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.83 E-value=3.5e-10 Score=128.68 Aligned_cols=65 Identities=20% Similarity=0.244 Sum_probs=59.6
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCccc
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI 1109 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI 1109 (1178)
-++.+||++.|.. +..||+++ |+|.+||++||+|++|||||||+++|.|+.+|+.|.|.++|.+.
T Consensus 45 ~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~ 109 (347)
T 2obl_A 45 PLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERG 109 (347)
T ss_dssp STTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCH
T ss_pred CeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccH
Confidence 4889999999963 34699999 99999999999999999999999999999999999999999763
No 222
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.83 E-value=7.4e-12 Score=135.26 Aligned_cols=37 Identities=30% Similarity=0.227 Sum_probs=22.9
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHh-ccC
Q 001041 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIE-RFY 436 (1178)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~-g~~ 436 (1178)
...+++||++++|++++|+||||||||||+++|. |++
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4678999999999999999999999999999999 998
No 223
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.83 E-value=2.7e-10 Score=121.10 Aligned_cols=90 Identities=10% Similarity=0.025 Sum_probs=66.5
Q ss_pred eEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCC--CCCeEEECCcccCCCChHHHHHhccccccccccccc-cH----HH
Q 001041 1065 NLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP--DAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TI----RA 1137 (1178)
Q Consensus 1065 sf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p--~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~g-TI----re 1137 (1178)
--..++|+.++|+||||||||||+++|.++++| ..|+|.++|.+.+. ..++.++|+||++.+|.. |. .|
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E 85 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLE 85 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHH
Confidence 346799999999999999999999999999986 68999999987653 236789999999999976 44 58
Q ss_pred HHhcCCC-CCCCHHHHHHHHHH
Q 001041 1138 NIAYGKG-GDATEAEIQAASEM 1158 (1178)
Q Consensus 1138 NI~~g~~-~~asdeei~~Al~~ 1158 (1178)
|+.+... -..+.+++.++++.
T Consensus 86 ~~~~~~~~yg~~~~~v~~~l~~ 107 (219)
T 1s96_A 86 HAEVFGNYYGTSREAIEQVLAT 107 (219)
T ss_dssp EEEETTEEEEEEHHHHHHHHTT
T ss_pred HHHHHhccCCCCHHHHHHHHhc
Confidence 8875311 01245667766653
No 224
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.82 E-value=6.3e-10 Score=129.16 Aligned_cols=153 Identities=18% Similarity=0.180 Sum_probs=91.0
Q ss_pred ccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHh
Q 001041 402 FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIA 481 (1178)
Q Consensus 402 l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~ 481 (1178)
-++++|++++|+.++|+|++|||||||+++|.|..+ .+.+.+...+ ...++++.|+.. ..-++.|+.-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl-----~p~~G~V~~~~~-~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTL-----SPNLGVVEVSEE-ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSS-----CCEEEEEECSSS-CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCccccee-----cceeeEEEecCc-ceEEEEeccc
Confidence 478999999999999999999999999999999743 3444333332 335777777641 1112222221
Q ss_pred cCC-----CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHH
Q 001041 482 YGK-----DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556 (1178)
Q Consensus 482 ~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~ 556 (1178)
+.. ......... ..+.+. ..+..+ +.. .+...+||+||+||+++||++..+|.|+++ +.+|..
T Consensus 215 li~~a~~~~~L~~~fl~-~~era~--~lL~vv----Dls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLEFLR-HIARTR--VLLYVL----DAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHHHHH-HHTSSS--EEEEEE----ETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHHHHH-HHHHHH--hhhEEe----CCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 110 001111111 111110 001000 100 122246999999999999999999999999 999987
Q ss_pred hHHHHHHHHHHHh--cCCeEEEEec
Q 001041 557 SEKVVQEALDRIM--VNRTTVIVAH 579 (1178)
Q Consensus 557 ~~~~i~~~i~~~~--~~~t~i~itH 579 (1178)
... ..+.+.+.. .+.+++.||.
T Consensus 283 ~~~-~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 283 EEE-AVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp CHH-HHHHHHHHHHTTTSCEEECCT
T ss_pred hHH-HHHHHHHHHHhcCCeEEEEEC
Confidence 663 333333332 2457776664
No 225
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.81 E-value=4.9e-10 Score=118.82 Aligned_cols=84 Identities=21% Similarity=0.335 Sum_probs=51.8
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhccc-----CCCCCeEEE-------CCcccC
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFY-----DPDAGHITL-------DGVEIQ 1110 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y-----~p~~G~I~I-------DG~dI~ 1110 (1178)
|+++|++|+|+ .++|++ |++++|++++|||++|||||||++.|.+.. .|+.|.+.+ ++..+-
T Consensus 4 l~~~~~~~~~~----~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~ 77 (210)
T 1pui_A 4 LNYQQTHFVMS----APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 77 (210)
T ss_dssp -------CEEE----ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE
T ss_pred hhhhhhhheee----cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE
Confidence 78999999995 258988 999999999999999999999999999998 888888765 333332
Q ss_pred CCC-----------hHHHHHhcccccccccccc
Q 001041 1111 KLQ-----------LKWLRQQMGLVSQEPVLFN 1132 (1178)
Q Consensus 1111 ~i~-----------l~~LR~~IsiV~Qdp~LF~ 1132 (1178)
+.+ .+.+|+.++.+.|+...++
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQ 110 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCTTEE
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhhccc
Confidence 221 2456777778877644433
No 226
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.80 E-value=1.7e-09 Score=121.82 Aligned_cols=76 Identities=14% Similarity=0.180 Sum_probs=65.1
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCCh----HHHHHhcc--ccccccccc-cccHHHHH
Q 001041 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL----KWLRQQMG--LVSQEPVLF-NDTIRANI 1139 (1178)
Q Consensus 1067 ~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l----~~LR~~Is--iV~Qdp~LF-~gTIreNI 1139 (1178)
..++|+.++||||+||||||+++.|.+++.|++|+|.++|.|+..... ..++++++ +++|++.++ ..|+++|+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 457899999999999999999999999999999999999999977653 34566666 899998877 46899999
Q ss_pred hcC
Q 001041 1140 AYG 1142 (1178)
Q Consensus 1140 ~~g 1142 (1178)
.++
T Consensus 205 ~~~ 207 (328)
T 3e70_C 205 QHA 207 (328)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 227
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.79 E-value=6.9e-10 Score=124.44 Aligned_cols=102 Identities=18% Similarity=0.146 Sum_probs=65.8
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEE---CCeecCCCCHHHHhcceEEEcCCCCC------------
Q 001041 407 ISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI---DGINLKEFQLQWIRKKIGLVSQEPVL------------ 471 (1178)
Q Consensus 407 l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i---~g~~~~~~~~~~~r~~i~~v~Q~~~l------------ 471 (1178)
|++.+|++++|+||||||||||+++|.|+..|+.|+|.+ +|.++.........+.++||+|+|.+
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456689999999999999999999999999999999999 89888655421111369999999953
Q ss_pred ----C-cccHHHHHhcCCC---CCCHHHHHHHHHHhcH-HHHHHhCC
Q 001041 472 ----F-TGSIKDNIAYGKD---DATTEEIRVATELANA-AKFIDKLP 509 (1178)
Q Consensus 472 ----~-~~ti~~ni~~~~~---~~~~~~~~~~~~~~~~-~~~i~~~~ 509 (1178)
| .-|+ +|+.|+.. .....++.++++..++ .+.....|
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~ 289 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYV 289 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHH
Confidence 3 3477 88887531 1223567777777777 34444444
No 228
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.78 E-value=2e-10 Score=130.05 Aligned_cols=101 Identities=13% Similarity=0.157 Sum_probs=67.8
Q ss_pred ccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccC-CCCCeEEEC-CcccCCCChHHHHHhccccccccccccc-cHH
Q 001041 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD-PDAGHITLD-GVEIQKLQLKWLRQQMGLVSQEPVLFND-TIR 1136 (1178)
Q Consensus 1060 vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~-p~~G~I~ID-G~dI~~i~l~~LR~~IsiV~Qdp~LF~g-TIr 1136 (1178)
.++++++. .+|+++||+|+||||||||+++|.++.. |..|+|.++ |.+.. ...++.++++||++.|++. |++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccHH
Confidence 47777775 4899999999999999999999999999 999999997 87653 2346789999999998865 898
Q ss_pred HHHhcCCCCCCCHHHHH----HHHHHcCchHHHhhcc
Q 001041 1137 ANIAYGKGGDATEAEIQ----AASEMANAHKFICSLQ 1169 (1178)
Q Consensus 1137 eNI~~g~~~~asdeei~----~Al~~A~~~dfI~~LP 1169 (1178)
++-.. ..+.+++. ++++.+++.+|-...|
T Consensus 280 e~~l~----~l~~~e~~~~~~e~l~~~gl~~f~~~~~ 312 (358)
T 2rcn_A 280 EFGLW----HLEPEQITQGFVEFHDYLGHCKYRDCKH 312 (358)
T ss_dssp TCCCC----CCCHHHHHHTSGGGGGGTTCSSSTTCCS
T ss_pred Hhhhc----CCCHHHHHHHHHHHHHHcCCchhcCCCc
Confidence 86322 34555543 4455566655544433
No 229
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.78 E-value=8.6e-10 Score=128.11 Aligned_cols=90 Identities=21% Similarity=0.176 Sum_probs=56.7
Q ss_pred ccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHh
Q 001041 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1178)
Q Consensus 1041 g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~ 1120 (1178)
+.|+++||+++|+. .++|+|+||+| +|||+||||||||++.|+++..|..| .+|.++...+. ..++.
T Consensus 10 ~~l~~~~l~~~y~~---~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~t-~~~~~ 76 (418)
T 2qag_C 10 GYVGFANLPNQVYR---KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKKT-VQVEQ 76 (418)
T ss_dssp -----CCCCCCTTT---TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC-----C-CEEEE
T ss_pred CcEEEEecceeECC---EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCccc-eeeee
Confidence 46999999999963 35999999998 99999999999999999999876555 24544432111 12467
Q ss_pred ccccccccccc-cccHHHHHhcCC
Q 001041 1121 MGLVSQEPVLF-NDTIRANIAYGK 1143 (1178)
Q Consensus 1121 IsiV~Qdp~LF-~gTIreNI~~g~ 1143 (1178)
+++++|++.++ .-||.||+.++.
T Consensus 77 i~~v~q~~~~~~~Ltv~Dt~g~~~ 100 (418)
T 2qag_C 77 SKVLIKEGGVQLLLTIVDTPGFGD 100 (418)
T ss_dssp EECC------CEEEEEEECC----
T ss_pred EEEEEecCCcccceeeeechhhhh
Confidence 89999998876 679999998874
No 230
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.78 E-value=1.5e-09 Score=112.15 Aligned_cols=81 Identities=21% Similarity=0.208 Sum_probs=65.8
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhcccCC-CCCeEE----------ECCcccCCCChHHHHHhccccccccccccccHHH
Q 001041 1069 RAGKTVALVGESGSGKSTVVSLLQRFYDP-DAGHIT----------LDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRA 1137 (1178)
Q Consensus 1069 ~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p-~~G~I~----------IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIre 1137 (1178)
.+|+.++|+||||||||||+++|.+++++ ..|.|. +||+|+..++.+.+++. +.|+.+++.+++.+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 79 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHED 79 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcC
Confidence 37899999999999999999999999863 345553 58999999999999874 67999999999999
Q ss_pred HHhcCCCCCCCHHHHHHHHH
Q 001041 1138 NIAYGKGGDATEAEIQAASE 1157 (1178)
Q Consensus 1138 NI~~g~~~~asdeei~~Al~ 1157 (1178)
| .||. +.+++.++++
T Consensus 80 n-~yg~----~~~~i~~~l~ 94 (180)
T 1kgd_A 80 A-MYGT----KLETIRKIHE 94 (180)
T ss_dssp E-EEEE----EHHHHHHHHH
T ss_pred c-cccc----cHHHHHHHHH
Confidence 9 4763 3556666665
No 231
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.78 E-value=1.7e-09 Score=127.68 Aligned_cols=81 Identities=22% Similarity=0.284 Sum_probs=69.7
Q ss_pred ccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccC--------------------------------------CCCCe
Q 001041 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--------------------------------------PDAGH 1101 (1178)
Q Consensus 1060 vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~--------------------------------------p~~G~ 1101 (1178)
+|+++||++++| .++|||++|||||||+++|..+.. +.+|+
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~ 128 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEE
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceE
Confidence 799999999999 999999999999999999965553 45789
Q ss_pred EEECCcccCCCChHHHHHh-ccccccccccccccHHHHHhc
Q 001041 1102 ITLDGVEIQKLQLKWLRQQ-MGLVSQEPVLFNDTIRANIAY 1141 (1178)
Q Consensus 1102 I~IDG~dI~~i~l~~LR~~-IsiV~Qdp~LF~gTIreNI~~ 1141 (1178)
|++||.+++..++.++++. +++++|++.++-++-.++..+
T Consensus 129 i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ 169 (415)
T 4aby_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGL 169 (415)
T ss_dssp EEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHH
T ss_pred EEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHH
Confidence 9999999988788888887 799999998887776655543
No 232
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.77 E-value=1.8e-09 Score=112.54 Aligned_cols=70 Identities=21% Similarity=0.211 Sum_probs=57.5
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccccccccccccccHHHHHhc
Q 001041 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAY 1141 (1178)
Q Consensus 1067 ~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~ 1141 (1178)
.+++|+.++|+|++||||||++++|.+. |..|.|.+||.++..... -++.+++++|++. .+.|+++|+.+
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~~ 74 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAAD 74 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHHH
Confidence 4789999999999999999999999998 678999999998754321 1345789999876 56788999854
No 233
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.75 E-value=2.2e-09 Score=113.25 Aligned_cols=71 Identities=11% Similarity=0.143 Sum_probs=57.5
Q ss_pred eEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccccccccccccc-cHHHHH
Q 001041 1065 NLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANI 1139 (1178)
Q Consensus 1065 sf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~g-TIreNI 1139 (1178)
|+++++|+.+||+||||||||||+++|.+++ | .+.++|.++...+....+..+++++|++.+|.. +..+|+
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL-A---EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS-S---SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC-C---CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 6788999999999999999999999999997 3 699999998887776678899999999988865 334443
No 234
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.75 E-value=4.5e-10 Score=130.65 Aligned_cols=117 Identities=17% Similarity=0.214 Sum_probs=81.3
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCC----CChHHHH
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK----LQLKWLR 1118 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~----i~l~~LR 1118 (1178)
++++|++|.|. ...+|+++ + .++|+.++|+|||||||||++++|++++.|++|+|.++|.++.. ++...++
T Consensus 144 ~~l~~Lg~~~~---~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~ 218 (418)
T 1p9r_A 144 LDLHSLGMTAH---NHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVN 218 (418)
T ss_dssp CCGGGSCCCHH---HHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECB
T ss_pred CCHHHcCCCHH---HHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEc
Confidence 45666666663 23478888 5 48999999999999999999999999999999999999988732 1122345
Q ss_pred Hhccccc---------cccccc--c-----ccHHHHHhcCCC--------CCCCHHHHHHHHHHcCchHH
Q 001041 1119 QQMGLVS---------QEPVLF--N-----DTIRANIAYGKG--------GDATEAEIQAASEMANAHKF 1164 (1178)
Q Consensus 1119 ~~IsiV~---------Qdp~LF--~-----gTIreNI~~g~~--------~~asdeei~~Al~~A~~~df 1164 (1178)
+++++++ |||.++ . -|+++|+.++.. ...+..+..+.++..++.++
T Consensus 219 ~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~ 288 (418)
T 1p9r_A 219 PRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPF 288 (418)
T ss_dssp GGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHH
T ss_pred cccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHH
Confidence 6666654 999763 2 388999875311 11122344555666666554
No 235
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.75 E-value=3.4e-10 Score=125.59 Aligned_cols=91 Identities=10% Similarity=0.085 Sum_probs=61.8
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccccccccccccccHHHHHhcCCCCC--
Q 001041 1069 RAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGD-- 1146 (1178)
Q Consensus 1069 ~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~-- 1146 (1178)
+++.+|||+|+||||||||+++|.+++.+. | . . |+.+.+|+||+++|++++++|+.++.+.+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccch
Confidence 356899999999999999999999999874 2 1 1 45566779999999999999998752100
Q ss_pred CCHHHHHHHHHHcCchHHHhhcccccccc
Q 001041 1147 ATEAEIQAASEMANAHKFICSLQQVRTSR 1175 (1178)
Q Consensus 1147 asdeei~~Al~~A~~~dfI~~LP~gldT~ 1175 (1178)
.+....-++.+.+.+.+++..|++|+||.
T Consensus 93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~ 121 (290)
T 1odf_A 93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHP 121 (290)
T ss_dssp GSSSCSTTSBCHHHHHHHHHHHTC-----
T ss_pred hhhccCcchhHHHHHHHHHHHhhccCccc
Confidence 00000111223445778999999998763
No 236
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.73 E-value=2.6e-09 Score=115.19 Aligned_cols=78 Identities=21% Similarity=0.249 Sum_probs=50.5
Q ss_pred cccccceEEeeCCCEEEEEcCCCCCHHHHHHHHh-ccc------------CCCCCeEEECCcccCCCChHHHHHhccccc
Q 001041 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQ-RFY------------DPDAGHITLDGVEIQKLQLKWLRQQMGLVS 1125 (1178)
Q Consensus 1059 ~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~-R~y------------~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~ 1125 (1178)
.-.+++||++++|+.+||+||||||||||+++|. +++ +|..|.+ +|+++...+...++.. +.
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~g~~~~~~~~~~~~~~---~~ 89 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--EGKDYYFVDREEFLRL---CS 89 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--BTTTBEECCHHHHHHH---HH
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--CCCeEEEecHHHhhhh---hh
Confidence 3689999999999999999999999999999999 999 7788876 7877776676666543 34
Q ss_pred cccccccccHHHHHhcC
Q 001041 1126 QEPVLFNDTIRANIAYG 1142 (1178)
Q Consensus 1126 Qdp~LF~gTIreNI~~g 1142 (1178)
++.+++.+++..|+ ||
T Consensus 90 ~~~~~~~~~~~~~~-~~ 105 (231)
T 3lnc_A 90 NGEIIEHAEVFGNF-YG 105 (231)
T ss_dssp TTCEEEEEEETTEE-EE
T ss_pred cCceehhhhhcccc-CC
Confidence 66777666666665 44
No 237
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.73 E-value=2.1e-09 Score=122.82 Aligned_cols=106 Identities=20% Similarity=0.203 Sum_probs=80.8
Q ss_pred eeEEeCCCCCCccccccc-eEEeeCCCEEEEEcCCCCCHHHHHHHHhccc--CCCC----Ce-EEECCcccCCCChHHHH
Q 001041 1047 HVSFKYPSRPDVQVFRDL-NLKIRAGKTVALVGESGSGKSTVVSLLQRFY--DPDA----GH-ITLDGVEIQKLQLKWLR 1118 (1178)
Q Consensus 1047 nVsf~Y~~~~~~~vL~~i-sf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y--~p~~----G~-I~IDG~dI~~i~l~~LR 1118 (1178)
.+++.++ .|+.+ ++.|++|+.++|+||+|||||||++.|++.+ +|++ |+ |+|||.+.- .+
T Consensus 112 ~isTG~~------~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~ 179 (349)
T 1pzn_A 112 RISTGSK------SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RP 179 (349)
T ss_dssp EECCSCH------HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CH
T ss_pred eecCCCH------HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CH
Confidence 4555553 45555 6899999999999999999999999999999 6666 67 999998762 36
Q ss_pred HhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhc
Q 001041 1119 QQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSL 1168 (1178)
Q Consensus 1119 ~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~L 1168 (1178)
+++++++|++.++..++.+||.+... .+.++..+.++. +..++.++
T Consensus 180 ~~i~~i~q~~~~~~~~v~~ni~~~~~--~~~~~~~~~l~~--~~~~~~~l 225 (349)
T 1pzn_A 180 ERIREIAQNRGLDPDEVLKHIYVARA--FNSNHQMLLVQQ--AEDKIKEL 225 (349)
T ss_dssp HHHHHHHHTTTCCHHHHGGGEEEEEC--CSHHHHHHHHHH--HHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHhhCEEEEec--CChHHHHHHHHH--HHHHHHHh
Confidence 78999999999999999999998642 333344444443 34556554
No 238
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.72 E-value=2.8e-09 Score=125.14 Aligned_cols=54 Identities=17% Similarity=0.140 Sum_probs=50.8
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCC
Q 001041 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ 454 (1178)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~ 454 (1178)
.+|+++||++++ ++++|+||||||||||+++|+|+++|++|+|.++|.++...+
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~ 71 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGST 71 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCC
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCc
Confidence 479999999999 999999999999999999999999999999999999887554
No 239
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.72 E-value=1.4e-09 Score=120.76 Aligned_cols=97 Identities=16% Similarity=0.244 Sum_probs=58.1
Q ss_pred EEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEE---CCcccCCCChHHHHHhcccccccccccc-----ccHHH
Q 001041 1066 LKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITL---DGVEIQKLQLKWLRQQMGLVSQEPVLFN-----DTIRA 1137 (1178)
Q Consensus 1066 f~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~I---DG~dI~~i~l~~LR~~IsiV~Qdp~LF~-----gTIre 1137 (1178)
+++.+|++++|+|+||+|||||+++|.++..|..|+|.+ +|.++.... +..+..+++|+|.|-++. -|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 456689999999999999999999999999999999999 898886532 222223899999997654 477 9
Q ss_pred HHh--cC-------------C-CCCCCHHHHHHHHHHcCchHH
Q 001041 1138 NIA--YG-------------K-GGDATEAEIQAASEMANAHKF 1164 (1178)
Q Consensus 1138 NI~--~g-------------~-~~~asdeei~~Al~~A~~~df 1164 (1178)
||. |. . .....+..+.+|++..++.+.
T Consensus 246 ~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~ 288 (307)
T 1t9h_A 246 ELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQY 288 (307)
T ss_dssp HHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHH
T ss_pred HHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHH
Confidence 983 21 0 011223568899998888653
No 240
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.71 E-value=2.5e-10 Score=122.78 Aligned_cols=127 Identities=14% Similarity=0.176 Sum_probs=96.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccC---CCCCCcEEE--------CCeecCC-CCHHHHhcceEEEcCCC------CCCc
Q 001041 412 GTTAALVGQSGSGKSTVISLIERFY---DPQAGEVLI--------DGINLKE-FQLQWIRKKIGLVSQEP------VLFT 473 (1178)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~---~~~~G~i~i--------~g~~~~~-~~~~~~r~~i~~v~Q~~------~l~~ 473 (1178)
+.+++|+|++||||||+++.|.+.+ .++.|.+.. +|.++.+ ....++++++++++|++ .+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 5689999999999999999999876 677888877 6776653 45667888999999987 4456
Q ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchh-cCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCC
Q 001041 474 GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLV-GEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 550 (1178)
Q Consensus 474 ~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~-~~~g~~lSgGqkqri~lARal~~~~~illlDe~t 550 (1178)
.++.+++. .+++..++..+..++.+.....+..+.+ .++|.-++|+ .++++++.+++++++.++.
T Consensus 85 ~~v~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~ 150 (227)
T 1cke_A 85 EDVSGEIR-------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDAS 150 (227)
T ss_dssp EECHHHHT-------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECC
T ss_pred eeCchhhC-------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCC
Confidence 67878764 3567777777777777766555555554 3456667887 5667788899999998874
No 241
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.71 E-value=1.6e-08 Score=112.51 Aligned_cols=138 Identities=12% Similarity=0.160 Sum_probs=89.7
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCH
Q 001041 410 SSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATT 489 (1178)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~ 489 (1178)
++|++++++|++||||||++..|.+.+.+.+|. ++.++.+|++ ..+..+++..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~------------------~V~lv~~D~~--r~~a~eqL~~------- 155 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK------------------KIAFITTDTY--RIAAVEQLKT------- 155 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC------------------CEEEEECCCS--STTHHHHHHH-------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC------------------EEEEEecCcc--cchHHHHHHH-------
Confidence 479999999999999999999999999887772 5778888873 3333333321
Q ss_pred HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh
Q 001041 490 EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM 569 (1178)
Q Consensus 490 ~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~ 569 (1178)
..+.. |...... ..++..+.+|+++ ++++++|+| |+++|+.....+.+..+-..
T Consensus 156 -----~~~~~-----------gl~~~~~------~~~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l~ 209 (296)
T 2px0_A 156 -----YAELL-----------QAPLEVC------YTKEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETIP 209 (296)
T ss_dssp -----HHTTT-----------TCCCCBC------SSHHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHSC
T ss_pred -----HHHhc-----------CCCeEec------CCHHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHHh
Confidence 11100 1111111 1234567778865 899999999 99999877666655433221
Q ss_pred ---cCCeEEEE--ecCcchhhc-cCEEEEEeCCEEEE
Q 001041 570 ---VNRTTVIV--AHRLSTVRN-ADMIAVIHRGKIVE 600 (1178)
Q Consensus 570 ---~~~t~i~i--tH~~~~~~~-~d~i~~l~~G~i~~ 600 (1178)
.+.+++++ +|..+.+.. +|++..++.+.++-
T Consensus 210 ~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 210 FESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp CCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred hcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 23345555 788776654 66665566666664
No 242
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.71 E-value=1.5e-08 Score=112.85 Aligned_cols=132 Identities=17% Similarity=0.156 Sum_probs=88.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
+..+++++.|+.. . ++++|+ +|++++++|++||||||++..|.+.+.+..|+|.+.+.|+..-...
T Consensus 77 ~~~~~l~~~~~~~---~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~------- 142 (295)
T 1ls1_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAR------- 142 (295)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHH-------
T ss_pred HHHHHHHHHHCCC---C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHH-------
Confidence 3445666667421 1 677887 9999999999999999999999999998889998877654321110
Q ss_pred EEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCE
Q 001041 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1178)
Q Consensus 464 ~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~i 543 (1178)
+. .....+. . |++-... +......+.+|.+|+++...++|+
T Consensus 143 --------------~q------------l~~~~~~-------~----~l~~~~~--~~~~~p~~l~~~~l~~~~~~~~D~ 183 (295)
T 1ls1_A 143 --------------EQ------------LRLLGEK-------V----GVPVLEV--MDGESPESIRRRVEEKARLEARDL 183 (295)
T ss_dssp --------------HH------------HHHHHHH-------H----TCCEEEC--CTTCCHHHHHHHHHHHHHHHTCCE
T ss_pred --------------HH------------HHHhccc-------C----CeEEEEc--CCCCCHHHHHHHHHHHHHhCCCCE
Confidence 00 0000010 0 2211111 112344566789999998899999
Q ss_pred EEEeCC-CCCCCHHhHHHHHHHHHHH
Q 001041 544 LLLDEA-TSALDAESEKVVQEALDRI 568 (1178)
Q Consensus 544 lllDe~-ts~lD~~~~~~i~~~i~~~ 568 (1178)
+|+|+| ++++|......+.+..+..
T Consensus 184 viiDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 184 ILVDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp EEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCccccHHHHHHHHHHhhhc
Confidence 999999 9999988777666655543
No 243
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.70 E-value=8.5e-09 Score=114.99 Aligned_cols=110 Identities=16% Similarity=0.370 Sum_probs=74.9
Q ss_pred eEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCC
Q 001041 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKD 485 (1178)
Q Consensus 406 ~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~ 485 (1178)
++..++|++++|+|++||||||++..|.+.+.+.+|+|.+.+.|... ....++
T Consensus 98 ~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r---------------------~~a~eq------ 150 (306)
T 1vma_A 98 NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR---------------------AAAIEQ------ 150 (306)
T ss_dssp CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC---------------------HHHHHH------
T ss_pred cccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc---------------------HHHHHH------
Confidence 44567899999999999999999999999999888888876655321 011111
Q ss_pred CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHH---HHHHHhccCCCEEEEeCCCCCCCHHhHHHHH
Q 001041 486 DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI---AIARAILKDPRILLLDEATSALDAESEKVVQ 562 (1178)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri---~lARal~~~~~illlDe~ts~lD~~~~~~i~ 562 (1178)
+...++ .+ |++. + ...|||+.|++ +|+||+.++++++|+|+|.. .+....+.
T Consensus 151 ------L~~~~~---------~~--gl~~-~----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~ 205 (306)
T 1vma_A 151 ------LKIWGE---------RV--GATV-I----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLM 205 (306)
T ss_dssp ------HHHHHH---------HH--TCEE-E----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHH
T ss_pred ------HHHHHH---------Hc--CCcE-E----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHH
Confidence 111111 11 2221 1 24589999999 99999999999999999974 34444444
Q ss_pred HHHHH
Q 001041 563 EALDR 567 (1178)
Q Consensus 563 ~~i~~ 567 (1178)
+.+.+
T Consensus 206 ~eL~~ 210 (306)
T 1vma_A 206 EELRK 210 (306)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 244
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.69 E-value=4.3e-09 Score=125.74 Aligned_cols=98 Identities=21% Similarity=0.236 Sum_probs=73.3
Q ss_pred cccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcccccccccccc--ccHH
Q 001041 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFN--DTIR 1136 (1178)
Q Consensus 1059 ~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~--gTIr 1136 (1178)
.+++++++.+++|+.++|+|||||||||++++|+++++|++|.|.|+|.+--.++. +..++++.|++. .. -|++
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~-~~~~~~~~ 323 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGM-GEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCS-SSCCBCHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeeccc-ccCCcCHH
Confidence 47899999999999999999999999999999999999999999999976322221 345677777765 33 2666
Q ss_pred HHHhcCC---C-----CCCCHHHHHHHHHHcC
Q 001041 1137 ANIAYGK---G-----GDATEAEIQAASEMAN 1160 (1178)
Q Consensus 1137 eNI~~g~---~-----~~asdeei~~Al~~A~ 1160 (1178)
++++... + ++.+++|...+++.++
T Consensus 324 ~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~ 355 (511)
T 2oap_1 324 DLLRAALRQRPDYIIVGEVRGREAQTLFQAMS 355 (511)
T ss_dssp HHHHTTGGGCCSEEEESCCCSTHHHHHHHHHH
T ss_pred HHHHHhhccCCCeEEeCCcCHHHHHHHHHhhc
Confidence 6654221 1 2466677777666553
No 245
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.68 E-value=1.3e-09 Score=115.33 Aligned_cols=53 Identities=25% Similarity=0.308 Sum_probs=45.3
Q ss_pred eeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccccccccccccccHHHHH
Q 001041 1068 IRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANI 1139 (1178)
Q Consensus 1068 I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI 1139 (1178)
.++|+++||+||||||||||+++|.++++|+ | ..+++|+||.+.++++.++|+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~ 71 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPR 71 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHh
Confidence 5789999999999999999999999999976 4 246778888888877777776
No 246
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.64 E-value=1.1e-08 Score=109.90 Aligned_cols=88 Identities=19% Similarity=0.236 Sum_probs=67.3
Q ss_pred EeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCC-------CCCeEEECCcccCCCChHHH
Q 001041 1045 LHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP-------DAGHITLDGVEIQKLQLKWL 1117 (1178)
Q Consensus 1045 f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p-------~~G~I~IDG~dI~~i~l~~L 1117 (1178)
++++++.++.- + .+|.+ -|++||.++|+||||||||||++.|++.+.+ ..|.|++++.+.. .
T Consensus 4 ~~~i~tG~~~L-D-~~l~g---gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~--~---- 72 (231)
T 4a74_A 4 IGRISTGSKSL-D-KLLGG---GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--R---- 72 (231)
T ss_dssp CCEECCSCHHH-H-HHTTS---SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC--C----
T ss_pred CCccCCCChhH-H-hHhcC---CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC--C----
Confidence 45666666421 1 24544 6999999999999999999999999997766 4558889887631 1
Q ss_pred HHhccccccccccccccHHHHHhcCC
Q 001041 1118 RQQMGLVSQEPVLFNDTIRANIAYGK 1143 (1178)
Q Consensus 1118 R~~IsiV~Qdp~LF~gTIreNI~~g~ 1143 (1178)
+++++.++|+..++..|+.+|+.+..
T Consensus 73 ~~~i~~~~~~~~~~~~~~~~~~~~~~ 98 (231)
T 4a74_A 73 PERIREIAQNRGLDPDEVLKHIYVAR 98 (231)
T ss_dssp HHHHHHHHHHTTSCHHHHHHTEEEEE
T ss_pred HHHHHHHHHHcCCCHHHHhhcEEEEe
Confidence 35678888988888889999998864
No 247
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.63 E-value=1.1e-08 Score=104.43 Aligned_cols=30 Identities=40% Similarity=0.471 Sum_probs=28.2
Q ss_pred cceEEeeCCCEEEEEcCCCCCHHHHHHHHh
Q 001041 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQ 1092 (1178)
Q Consensus 1063 ~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~ 1092 (1178)
||||++++||.++||||||||||||+++++
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHS
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHc
Confidence 689999999999999999999999999744
No 248
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.61 E-value=5e-09 Score=110.55 Aligned_cols=72 Identities=11% Similarity=0.104 Sum_probs=55.3
Q ss_pred eEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCc-ccHHHHHh
Q 001041 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT-GSIKDNIA 481 (1178)
Q Consensus 406 ~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-~ti~~ni~ 481 (1178)
|+++++|++++|+||||||||||+++|.|+++ .+.+++.++........+..++|++|++..|. .++.+|+.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 56788999999999999999999999999974 68888877766554455678999999997764 45555554
No 249
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.60 E-value=3.2e-09 Score=109.98 Aligned_cols=54 Identities=20% Similarity=0.385 Sum_probs=49.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcccccccc
Q 001041 1071 GKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEP 1128 (1178)
Q Consensus 1071 Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp 1128 (1178)
|++++|+|++||||||++++|+++++ ++| |.+||.++.++. .+|+++++++|+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~ 54 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL 54 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec
Confidence 79999999999999999999999999 999 999999987554 5789999999984
No 250
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.60 E-value=2.1e-10 Score=130.94 Aligned_cols=146 Identities=17% Similarity=0.197 Sum_probs=92.8
Q ss_pred CccccceeEEEeCC-------CEEEEEcCCCCcHHHHHHHHhccC----CCCCCcEEECCeecCCCCHHHHhcceEEEcC
Q 001041 399 EQIFSGFSISISSG-------TTAALVGQSGSGKSTVISLIERFY----DPQAGEVLIDGINLKEFQLQWIRKKIGLVSQ 467 (1178)
Q Consensus 399 ~~~l~~i~l~i~~g-------~~~~ivG~~GsGKStl~~~l~g~~----~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q 467 (1178)
..+++++++.+++| +.++|+||+|+|||||+++|.|++ .+.+|.+..++.++..+-....+..|.+++|
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE 110 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDE 110 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEET
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcc
Confidence 35889999999877 899999999999999999999998 6677877766655432211111457999999
Q ss_pred CCCCCcccHHHHHhcCCCCCC------HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCC
Q 001041 468 EPVLFTGSIKDNIAYGKDDAT------TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1178)
Q Consensus 468 ~~~l~~~ti~~ni~~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~ 541 (1178)
.+.++. ++.|++........ ..... +. +...+.. -++.. ...+...||+|+|||++++
T Consensus 111 ~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~~~---~~--i~~~l~~--~~li~-at~~~~~Ls~~l~sR~~l~------- 174 (334)
T 1in4_A 111 IHRLNK-AVEELLYSAIEDFQIDIMIGKGPSA---KS--IRIDIQP--FTLVG-ATTRSGLLSSPLRSRFGII------- 174 (334)
T ss_dssp GGGCCH-HHHHHHHHHHHTSCCCC--------------------CC--CEEEE-EESCGGGSCHHHHTTCSEE-------
T ss_pred hhhcCH-HHHHHHHHHHHhcccceeeccCccc---cc--ccccCCC--eEEEE-ecCCcccCCHHHHHhcCce-------
Confidence 887765 78888742211110 00000 00 0111111 12221 2233457999999998654
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHh
Q 001041 542 RILLLDEATSALDAESEKVVQEALDRIM 569 (1178)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~i~~~~ 569 (1178)
.+||+.+...+.+.++...
T Consensus 175 ---------~~Ld~~~~~~l~~iL~~~~ 193 (334)
T 1in4_A 175 ---------LELDFYTVKELKEIIKRAA 193 (334)
T ss_dssp ---------EECCCCCHHHHHHHHHHHH
T ss_pred ---------eeCCCCCHHHHHHHHHHHH
Confidence 6788888777777776653
No 251
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.59 E-value=1.5e-10 Score=128.80 Aligned_cols=135 Identities=19% Similarity=0.245 Sum_probs=90.7
Q ss_pred EEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEE
Q 001041 386 LRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465 (1178)
Q Consensus 386 ~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v 465 (1178)
++++...|. ...+++++++++++| ++|+||+|||||||+++|.++.. .|.|.++|.++.+......++.+.++
T Consensus 52 l~~l~~~~~---~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~ 124 (278)
T 1iy2_A 52 LKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 124 (278)
T ss_dssp HHHHHHHHH---CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHH
T ss_pred HHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHH
Confidence 345555553 235899999999999 99999999999999999999885 78999998776544333445667888
Q ss_pred cCCCC-CC-cccHHHHHh-cCCCCCC-----HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHh
Q 001041 466 SQEPV-LF-TGSIKDNIA-YGKDDAT-----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1178)
Q Consensus 466 ~Q~~~-l~-~~ti~~ni~-~~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal 537 (1178)
+|++. .+ .-++.||+. ++..... .++.... +.+.+ ..|||||+||..+++|+
T Consensus 125 ~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~-----~~~ll---------------~~lsgg~~~~~~i~~a~ 184 (278)
T 1iy2_A 125 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT-----LNQLL---------------VEMDGFEKDTAIVVMAA 184 (278)
T ss_dssp HHHHHTSCSEEEEEETHHHHHCC--------CHHHHHH-----HHHHH---------------HHHTTCCTTCCEEEEEE
T ss_pred HHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHH-----HHHHH---------------HHHhCCCCCCCEEEEEe
Confidence 88763 23 345667773 3221110 0111111 11111 13789999999999999
Q ss_pred ccCCCEEEEeCC
Q 001041 538 LKDPRILLLDEA 549 (1178)
Q Consensus 538 ~~~~~illlDe~ 549 (1178)
..+|++ ||++
T Consensus 185 t~~p~~--ld~~ 194 (278)
T 1iy2_A 185 TNRPDI--LDPA 194 (278)
T ss_dssp ESCTTS--SCHH
T ss_pred cCCchh--CCHh
Confidence 999876 4543
No 252
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.59 E-value=1.2e-09 Score=116.24 Aligned_cols=75 Identities=15% Similarity=0.159 Sum_probs=52.4
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCCh-------
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL------- 1114 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l------- 1114 (1178)
.|+++|++..|. . +|++++ +.++|+||||||||||+++|.+++.|++|.|.++|.++...+.
T Consensus 9 ~l~l~~~~~~~~----~------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (227)
T 1qhl_A 9 SLTLINWNGFFA----R------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGL 77 (227)
T ss_dssp EEEEEEETTEEE----E------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------C
T ss_pred EEEEEeeecccC----C------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccch
Confidence 488888875552 1 466667 8999999999999999999999999999999999999844332
Q ss_pred -HHHHHhccccccc
Q 001041 1115 -KWLRQQMGLVSQE 1127 (1178)
Q Consensus 1115 -~~LR~~IsiV~Qd 1127 (1178)
..+|.++++|+|+
T Consensus 78 ~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 78 HGKLKAGVCYSMLD 91 (227)
T ss_dssp GGGBCSSEEEEEEE
T ss_pred hhHhhcCcEEEEEe
Confidence 2346789999986
No 253
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.57 E-value=3.5e-09 Score=115.57 Aligned_cols=72 Identities=15% Similarity=0.236 Sum_probs=62.7
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHh---ccCCCCCCcEE--------ECCeecC-CCCHHHHhcceEEEcCC------CCC
Q 001041 410 SSGTTAALVGQSGSGKSTVISLIE---RFYDPQAGEVL--------IDGINLK-EFQLQWIRKKIGLVSQE------PVL 471 (1178)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~---g~~~~~~G~i~--------i~g~~~~-~~~~~~~r~~i~~v~Q~------~~l 471 (1178)
++|++++|+||+||||||++++|. |+..++.|.+. .+|.++. ......+++++++++|+ .++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVIL 104 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEE
Confidence 789999999999999999999999 99999999998 8999884 45678899999999965 356
Q ss_pred CcccHHHHHh
Q 001041 472 FTGSIKDNIA 481 (1178)
Q Consensus 472 ~~~ti~~ni~ 481 (1178)
+..++.+||.
T Consensus 105 ~~~~v~~~i~ 114 (252)
T 4e22_A 105 EGEDVSNEIR 114 (252)
T ss_dssp TTEECTTGGG
T ss_pred CCeehhHHHH
Confidence 6778888865
No 254
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.56 E-value=1.6e-08 Score=104.89 Aligned_cols=78 Identities=24% Similarity=0.438 Sum_probs=64.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhcccC-------------CCCCeEEECCcccCCCChHHHHHhccccccccccccccHHH
Q 001041 1071 GKTVALVGESGSGKSTVVSLLQRFYD-------------PDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRA 1137 (1178)
Q Consensus 1071 Ge~vaIVG~SGSGKSTL~~lL~R~y~-------------p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIre 1137 (1178)
|+.++|+||||||||||+++|.++++ |..|++ ||+++...+.+.+++.+ .|+.+++..++..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~--~g~~~~~~~~~~~~~~~---~~~~~~e~~~~~~ 75 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMI---KNNEFIEWAQFSG 75 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC--BTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc--CCeeeeecCHHHHHHHH---hhcceeeEEEEec
Confidence 67899999999999999999999998 888986 99999888888887764 3888899999988
Q ss_pred HHhcCCCCCCCHHHHHHHHHH
Q 001041 1138 NIAYGKGGDATEAEIQAASEM 1158 (1178)
Q Consensus 1138 NI~~g~~~~asdeei~~Al~~ 1158 (1178)
|+ ||. +.+++.++++.
T Consensus 76 ~~-yg~----~~~~i~~~l~~ 91 (186)
T 3a00_A 76 NY-YGS----TVASVKQVSKS 91 (186)
T ss_dssp EE-EEE----EHHHHHHHHHT
T ss_pred ee-ccC----cHHHHHHHHHc
Confidence 87 763 34556555544
No 255
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.56 E-value=1.7e-07 Score=106.71 Aligned_cols=35 Identities=23% Similarity=0.279 Sum_probs=28.8
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCc
Q 001041 408 SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442 (1178)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~ 442 (1178)
-+++|+++.|.||+|||||||+..++.......|.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~ 91 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGI 91 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCe
Confidence 47899999999999999999988888665444443
No 256
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.55 E-value=1.7e-10 Score=126.51 Aligned_cols=137 Identities=19% Similarity=0.247 Sum_probs=91.2
Q ss_pred EEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEE
Q 001041 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGL 464 (1178)
Q Consensus 385 ~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~ 464 (1178)
+++++...|. ...+++++++++++| ++|+||+|||||||+++|.++.. .|.|.++|.++........++.+.+
T Consensus 27 ~l~~l~~~~~---~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 99 (254)
T 1ixz_A 27 ELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 99 (254)
T ss_dssp HHHHHHHHHH---CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHH
T ss_pred HHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHH
Confidence 4455655553 235899999999999 99999999999999999999875 7899999877644433344556778
Q ss_pred EcCCCC-CC-cccHHHHHh-cCCCCCC-----HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHH
Q 001041 465 VSQEPV-LF-TGSIKDNIA-YGKDDAT-----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1178)
Q Consensus 465 v~Q~~~-l~-~~ti~~ni~-~~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARa 536 (1178)
++|++. .+ .-++.||+. ++..... .++..+. +.+.+ ..|||||+||..+++|
T Consensus 100 ~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~-----~~~ll---------------~~l~g~~~~~~~i~~a 159 (254)
T 1ixz_A 100 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT-----LNQLL---------------VEMDGFEKDTAIVVMA 159 (254)
T ss_dssp HHHHHTTSSSEEEEEETHHHHHC---------CHHHHHH-----HHHHH---------------HHHHTCCTTCCEEEEE
T ss_pred HHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHH-----HHHHH---------------HHHhCCCCCCCEEEEE
Confidence 888753 22 345666663 3221110 0111111 11111 1367999999999999
Q ss_pred hccCCCEEEEeCCC
Q 001041 537 ILKDPRILLLDEAT 550 (1178)
Q Consensus 537 l~~~~~illlDe~t 550 (1178)
+..+|++ ||+++
T Consensus 160 ~t~~p~~--ld~~l 171 (254)
T 1ixz_A 160 ATNRPDI--LDPAL 171 (254)
T ss_dssp EESCGGG--SCGGG
T ss_pred ccCCchh--CCHHH
Confidence 9999886 56654
No 257
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.54 E-value=2.2e-08 Score=114.17 Aligned_cols=107 Identities=21% Similarity=0.277 Sum_probs=74.4
Q ss_pred eeeEEeCCCCCCccccccceE-------EeeCCCEEEEEcCCCCCHHHHHHHHhcccCCC-CCeEEECCcccCCCChHHH
Q 001041 1046 HHVSFKYPSRPDVQVFRDLNL-------KIRAGKTVALVGESGSGKSTVVSLLQRFYDPD-AGHITLDGVEIQKLQLKWL 1117 (1178)
Q Consensus 1046 ~nVsf~Y~~~~~~~vL~~isf-------~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~-~G~I~IDG~dI~~i~l~~L 1117 (1178)
.+++++|... ..+.|+++.+ .+++|+.++|+|||||||||++++|+++++|+ +|.|...+.++ ++. +
T Consensus 92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~---~ 166 (356)
T 3jvv_A 92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV---H 166 (356)
T ss_dssp EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC---C
T ss_pred cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh---h
Confidence 5788888543 3467888887 78999999999999999999999999999997 56666554444 333 3
Q ss_pred HHhcccccccccc-----ccccHHHHHhcCCC----CCCCHHHHHHHHH
Q 001041 1118 RQQMGLVSQEPVL-----FNDTIRANIAYGKG----GDATEAEIQAASE 1157 (1178)
Q Consensus 1118 R~~IsiV~Qdp~L-----F~gTIreNI~~g~~----~~asdeei~~Al~ 1157 (1178)
+...++|+|.+.- |...|+.-++..+. ++.+|.|..+.+.
T Consensus 167 ~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillDEp~d~e~~~~~~ 215 (356)
T 3jvv_A 167 ESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGEMRDLETIRLAL 215 (356)
T ss_dssp CCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEESCCCSHHHHHHHH
T ss_pred hccccceeeeeeccccCCHHHHHHHHhhhCcCEEecCCCCCHHHHHHHH
Confidence 4456788887653 33345555554421 2456777665543
No 258
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.54 E-value=9.9e-09 Score=114.01 Aligned_cols=73 Identities=23% Similarity=0.306 Sum_probs=44.4
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEE---CCeecCCCCHHHHhcceEEEcCCCCCCc-----ccHHH
Q 001041 407 ISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI---DGINLKEFQLQWIRKKIGLVSQEPVLFT-----GSIKD 478 (1178)
Q Consensus 407 l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i---~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-----~ti~~ 478 (1178)
+++.+|++++|+|+||+|||||+++|.|+..|..|+|.+ +|.++.... ...+..++|++|+|-+.. .|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 456789999999999999999999999999999999998 887765432 122223899999997653 578 9
Q ss_pred HHh
Q 001041 479 NIA 481 (1178)
Q Consensus 479 ni~ 481 (1178)
|+.
T Consensus 246 ~l~ 248 (307)
T 1t9h_A 246 ELG 248 (307)
T ss_dssp HHG
T ss_pred HHH
Confidence 984
No 259
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.54 E-value=7.5e-09 Score=116.97 Aligned_cols=71 Identities=15% Similarity=0.171 Sum_probs=63.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHhccc--------CCCCCeEEECCcccCCCC---------------hHHHHHhcccc---c
Q 001041 1072 KTVALVGESGSGKSTVVSLLQRFY--------DPDAGHITLDGVEIQKLQ---------------LKWLRQQMGLV---S 1125 (1178)
Q Consensus 1072 e~vaIVG~SGSGKSTL~~lL~R~y--------~p~~G~I~IDG~dI~~i~---------------l~~LR~~IsiV---~ 1125 (1178)
+.++|+|++||||||+++.|++++ .|+.|+|.|||.++...+ ..++++.++.+ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999998 789999999999998774 46789999988 7
Q ss_pred cccc-cccccHHHHHhcC
Q 001041 1126 QEPV-LFNDTIRANIAYG 1142 (1178)
Q Consensus 1126 Qdp~-LF~gTIreNI~~g 1142 (1178)
|++. .|+.++.||+.++
T Consensus 85 q~~~~~~~~~v~E~~~l~ 102 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMA 102 (318)
T ss_dssp HHTSCCCSEEEEEEETTC
T ss_pred hcCCCCCCEEEEeCCCCC
Confidence 9886 4799999999776
No 260
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.53 E-value=1.2e-08 Score=114.21 Aligned_cols=84 Identities=21% Similarity=0.253 Sum_probs=35.5
Q ss_pred eeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcc-cCCCCCeEEECCcccCCCChHHHHHhcccc
Q 001041 1046 HHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRF-YDPDAGHITLDGVEIQKLQLKWLRQQMGLV 1124 (1178)
Q Consensus 1046 ~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~-y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV 1124 (1178)
+|++..|.. ..+++|++|+| +|||++|+|||||++.|++. ..|++| |.++|.++.. .. . ++.++++
T Consensus 2 ~~l~~~~~~---~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~-~-~~~~~~~ 68 (301)
T 2qnr_A 2 SNLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TV-Q-IEASTVE 68 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEE
T ss_pred CCCcceECC---EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cc-e-EeeEEEE
Confidence 478888953 35999999998 99999999999999999998 888999 9999988754 22 1 4678999
Q ss_pred ccccccc-cccHHHHHhcC
Q 001041 1125 SQEPVLF-NDTIRANIAYG 1142 (1178)
Q Consensus 1125 ~Qdp~LF-~gTIreNI~~g 1142 (1178)
+|++-++ .-||.||..+|
T Consensus 69 ~q~~~~~~~ltv~Dt~g~~ 87 (301)
T 2qnr_A 69 IEERGVKLRLTVVDTPGYG 87 (301)
T ss_dssp EC---CCEEEEEEEEC---
T ss_pred ecCCCcccCcchhhhhhhh
Confidence 9987654 55888888765
No 261
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.52 E-value=5.5e-09 Score=108.45 Aligned_cols=127 Identities=20% Similarity=0.341 Sum_probs=56.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccCC-------------CCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHH
Q 001041 412 GTTAALVGQSGSGKSTVISLIERFYD-------------PQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKD 478 (1178)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~~-------------~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ 478 (1178)
|++++|+||||||||||+++|+|+++ |..|++ +|.+....+....+..+ .|+..++..++..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~--~g~~~~~~~~~~~~~~~---~~~~~~e~~~~~~ 75 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMI---KNNEFIEWAQFSG 75 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC--BTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc--CCeeeeecCHHHHHHHH---hhcceeeEEEEec
Confidence 67899999999999999999999998 777775 77666555555544332 2333344444444
Q ss_pred HHhcCCCCCCHHHHHHHHHH----------hcHHHHHHh--------------CCCCccchhcCCCCCCChHHHHHHHHH
Q 001041 479 NIAYGKDDATTEEIRVATEL----------ANAAKFIDK--------------LPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1178)
Q Consensus 479 ni~~~~~~~~~~~~~~~~~~----------~~~~~~i~~--------------~~~g~~t~~~~~g~~lSgGqkqri~lA 534 (1178)
|+ +|.+ .+.+...++. .++ ..+.. -++-+...+.++|..-....+||++-|
T Consensus 76 ~~-yg~~---~~~i~~~l~~g~~~il~~~~~g~-~~l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~~~ 150 (186)
T 3a00_A 76 NY-YGST---VASVKQVSKSGKTCILDIDMQGV-KSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAA 150 (186)
T ss_dssp EE-EEEE---HHHHHHHHHTTCEEEEECCHHHH-HHHHTCGGGCCEEEEEECSCC-------------------------
T ss_pred ee-ccCc---HHHHHHHHHcCCeEEEEEcHHHH-HHHHHhcCCCeEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 43 3322 2223332222 111 11222 113444555666766667788899888
Q ss_pred HHhc-----cCCCEEEEeC
Q 001041 535 RAIL-----KDPRILLLDE 548 (1178)
Q Consensus 535 Ral~-----~~~~illlDe 548 (1178)
+.-+ ..+|.+|..|
T Consensus 151 ~~~~~~~~~~~~d~vi~nd 169 (186)
T 3a00_A 151 QAELAYAETGAHDKVIVND 169 (186)
T ss_dssp --------CCCCSEEEECS
T ss_pred HHHHHhhcccCCcEEEECc
Confidence 8755 5567777665
No 262
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.51 E-value=9.4e-11 Score=134.72 Aligned_cols=166 Identities=17% Similarity=0.173 Sum_probs=104.9
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhc------------cCCCCCCcEEECCeecCCCCH-HHHhcce---EEEcCCCCC
Q 001041 408 SISSGTTAALVGQSGSGKSTVISLIER------------FYDPQAGEVLIDGINLKEFQL-QWIRKKI---GLVSQEPVL 471 (1178)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g------------~~~~~~G~i~i~g~~~~~~~~-~~~r~~i---~~v~Q~~~l 471 (1178)
.+++|.+++|+|++|+|||||+++|.| ..+|+.|.|.++|..+..+.. ..-++.+ .++.+.|-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 457899999999999999999999999 567889999998743211100 0001122 366677765
Q ss_pred Ccc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchh----cCCCCCCChHHHHHHHHHHHhccCC--CEE
Q 001041 472 FTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLV----GEHGTQLSGGQKQRIAIARAILKDP--RIL 544 (1178)
Q Consensus 472 ~~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~----~~~g~~lSgGqkqri~lARal~~~~--~il 544 (1178)
..+ |..+++ .. .....++.+ +..-..+ ......++|+. +| +++
T Consensus 96 ~~~~s~~e~L-------~~-~fl~~ir~~----------d~il~Vvd~~~d~~i~~v~~~~------------dP~~di~ 145 (392)
T 1ni3_A 96 TKGASTGVGL-------GN-AFLSHVRAV----------DAIYQVVRAFDDAEIIHVEGDV------------DPIRDLS 145 (392)
T ss_dssp CCCCCSSSSS-------CH-HHHHHHTTC----------SEEEEEEECCCTTCSSCCSSSS------------CHHHHHH
T ss_pred ccCCcHHHHH-------HH-HHHHHHHHH----------HHHHHHHhccccceeeeecccc------------Ccchhhh
Confidence 532 222211 11 111111111 1111111 12223355542 88 999
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHH-hc-CCeEEEEecCcchhhc-cCEEE-EEeCC-EEEEecChh
Q 001041 545 LLDEATSALDAESEKVVQEALDRI-MV-NRTTVIVAHRLSTVRN-ADMIA-VIHRG-KIVEKGTHS 605 (1178)
Q Consensus 545 llDe~ts~lD~~~~~~i~~~i~~~-~~-~~t~i~itH~~~~~~~-~d~i~-~l~~G-~i~~~g~~~ 605 (1178)
++|||++.+|++..+...+.++.. .+ +.|+ ++|.+..+.. ||++. +|++| +++..|+.+
T Consensus 146 ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 146 IIVDELLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred hchhhhHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCCCC
Confidence 999999999999888777777766 43 4554 3999887754 89999 99999 887666543
No 263
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.50 E-value=5.4e-09 Score=128.93 Aligned_cols=157 Identities=14% Similarity=0.161 Sum_probs=98.4
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCC-CcEEECCeecCCCCHHHHhcceEEEcCCC--------
Q 001041 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA-GEVLIDGINLKEFQLQWIRKKIGLVSQEP-------- 469 (1178)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~-G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~-------- 469 (1178)
..+++++++.+++|+.++|+||+|||||||+++|.+++++.. |.+.+++.+.... ...++++||..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQGRRIVEKY 121 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecchHHHHHHHH
Confidence 458899999999999999999999999999999999998877 7788877655443 34688887754
Q ss_pred --------------CCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHH
Q 001041 470 --------------VLF-TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1178)
Q Consensus 470 --------------~l~-~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lA 534 (1178)
|.+ ..++.+|+..+........+... ......+.+.. ++.. ......+|+|++|++..+
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~~~~~~~L~G~----~~~~-~~~~g~~~~g~~~~i~~g 195 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-TGAHAGALLGD----VRHD-PFQSGGLGTPAHERVEPG 195 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-TTCCHHHHHCE----ECCC-CC----CCCCGGGGEECC
T ss_pred HHhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-CCCCHHhcCce----EEec-hhhcCCccccccccccCc
Confidence 222 22333333321110000000000 00001111111 1110 122235999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHH
Q 001041 535 RAILKDPRILLLDEATSALDAESEKVVQEALDR 567 (1178)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~ 567 (1178)
+....++.+|+|||.-. |++.....+.+.+++
T Consensus 196 ~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 196 MIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999988 788777766666654
No 264
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.50 E-value=5.4e-08 Score=110.26 Aligned_cols=91 Identities=16% Similarity=0.205 Sum_probs=72.4
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcc---------------------------
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRF--------------------------- 1094 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~--------------------------- 1094 (1178)
.|+++|. .+|. ++++|++.+| .++|||++|||||||+.+|..+
T Consensus 5 ~L~i~nf-r~~~--------~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~ 74 (322)
T 1e69_A 5 KLYLKGF-KSFG--------RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPP 74 (322)
T ss_dssp EEEEESB-TTBC--------SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCC
T ss_pred EEEEeCc-eeec--------CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCC
Confidence 4777772 2342 3568889999 9999999999999999999833
Q ss_pred -----------------------cCCCCCeEEECCcccCCCChHHHHHhccccccccccc-cccHHHHHhcC
Q 001041 1095 -----------------------YDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAYG 1142 (1178)
Q Consensus 1095 -----------------------y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF-~gTIreNI~~g 1142 (1178)
+.+.+|.+++||.+++.-++..++..+++.||+..++ .|+|.+|+...
T Consensus 75 ~~~~~v~~~f~~~~~~~~i~r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~ 146 (322)
T 1e69_A 75 AGSAYVELVFEENGEEITVARELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNAS 146 (322)
T ss_dssp CSEEEEEEEEESSSCEEEEEEEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC-
T ss_pred CceEEEEEEEEeCCeEEEEEEEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhcc
Confidence 3455679999999986666777777899999998766 99999999765
No 265
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.48 E-value=7e-08 Score=104.80 Aligned_cols=67 Identities=16% Similarity=0.265 Sum_probs=42.9
Q ss_pred HHHHHHHHhc--cCCCEEEEeCCCCCC--CHHhHHHHHHHHHHHh--cCCeEEEEecCcch--------h-hccCEEEEE
Q 001041 529 QRIAIARAIL--KDPRILLLDEATSAL--DAESEKVVQEALDRIM--VNRTTVIVAHRLST--------V-RNADMIAVI 593 (1178)
Q Consensus 529 qri~lARal~--~~~~illlDe~ts~l--D~~~~~~i~~~i~~~~--~~~t~i~itH~~~~--------~-~~~d~i~~l 593 (1178)
+....++.++ .+|+++++|++++-+ |+...+.+...+.+.. .++|+++++|.... + ..||.|+.|
T Consensus 115 ~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L 194 (247)
T 2dr3_A 115 EFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRL 194 (247)
T ss_dssp HHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEE
Confidence 3344444444 479999999999887 5533333333343332 47899999997654 2 458999999
Q ss_pred eC
Q 001041 594 HR 595 (1178)
Q Consensus 594 ~~ 595 (1178)
+.
T Consensus 195 ~~ 196 (247)
T 2dr3_A 195 DL 196 (247)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 266
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.48 E-value=4.3e-09 Score=111.88 Aligned_cols=75 Identities=12% Similarity=0.132 Sum_probs=50.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHH------
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ------ 456 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~------ 456 (1178)
.++++|++..|. . ++++.+ ++++|+||||||||||+++|.|++.|++|+|.++|.++...+..
T Consensus 9 ~l~l~~~~~~~~----~------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (227)
T 1qhl_A 9 SLTLINWNGFFA----R------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGL 77 (227)
T ss_dssp EEEEEEETTEEE----E------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------C
T ss_pred EEEEEeeecccC----C------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccch
Confidence 477888765442 1 456666 89999999999999999999999999999999999887443321
Q ss_pred --HHhcceEEEcCC
Q 001041 457 --WIRKKIGLVSQE 468 (1178)
Q Consensus 457 --~~r~~i~~v~Q~ 468 (1178)
..+..++|++|+
T Consensus 78 ~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 78 HGKLKAGVCYSMLD 91 (227)
T ss_dssp GGGBCSSEEEEEEE
T ss_pred hhHhhcCcEEEEEe
Confidence 235678999883
No 267
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.48 E-value=9.5e-09 Score=121.55 Aligned_cols=159 Identities=21% Similarity=0.264 Sum_probs=92.3
Q ss_pred ceeEEEeCCCEEEEEcCCCCcHHHHHHHHhc--cCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHh
Q 001041 404 GFSISISSGTTAALVGQSGSGKSTVISLIER--FYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIA 481 (1178)
Q Consensus 404 ~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g--~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~ 481 (1178)
-+++++.++..+.|.|+|||||||+++.|.. ++.++.|++.+.+.|.+......+. +-|++.. +|.+|.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~-------~lPhl~~-~Vvtd~- 229 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYE-------GIPHLLT-EVVTDM- 229 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGT-------TCTTBSS-SCBCSH-
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhc-------cCCcccc-eeecCH-
Confidence 4778889999999999999999999999876 5666778888888777654433322 1233321 110111
Q ss_pred cCCCCCCHHHHHHHHH-----HhcHHHHHHhCCCCccchhcCC---CCCCChHHHHHH----------HHHHHhccCCC-
Q 001041 482 YGKDDATTEEIRVATE-----LANAAKFIDKLPQGIDTLVGEH---GTQLSGGQKQRI----------AIARAILKDPR- 542 (1178)
Q Consensus 482 ~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~g~~t~~~~~---g~~lSgGqkqri----------~lARal~~~~~- 542 (1178)
++...+++ +..-.+.+... |....-+-+ ...+||||+||. ++|+++...|.
T Consensus 230 --------~~a~~~L~~~~~EmerR~~ll~~~--Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~i 299 (512)
T 2ius_A 230 --------KDAANALRWCVNEMERRYKLMSAL--GVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYI 299 (512)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHT--TCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEE
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHc--CCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcE
Confidence 11111111 10011122221 222111100 113678887752 46677778898
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHH----h-cCCeEEEEecCcc
Q 001041 543 ILLLDEATSALDAESEKVVQEALDRI----M-VNRTTVIVAHRLS 582 (1178)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~----~-~~~t~i~itH~~~ 582 (1178)
++++||+++.+|.. .+.+.+.+..+ . .|.++|++|||++
T Consensus 300 vlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 300 VVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 88999999988743 23344444332 1 2679999999988
No 268
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.47 E-value=4e-08 Score=103.65 Aligned_cols=85 Identities=14% Similarity=0.171 Sum_probs=52.9
Q ss_pred EEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcccccccc-----------cccccc
Q 001041 1066 LKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEP-----------VLFNDT 1134 (1178)
Q Consensus 1066 f~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp-----------~LF~gT 1134 (1178)
++|++|+.++|+|++||||||++++|.+++.|+.| +.+ +...++.. ...+..+++++|++ .++..+
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMR-EGEVDGVDYFFKTRDAFEALIKDDQFIEYAE 77 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCC-TTCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCC-CCccCCCceEEcCHHHHHHHHHcCCeEEEEe
Confidence 46899999999999999999999999999977655 222 22222211 11122366666654 455666
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHH
Q 001041 1135 IRANIAYGKGGDATEAEIQAASEM 1158 (1178)
Q Consensus 1135 IreNI~~g~~~~asdeei~~Al~~ 1158 (1178)
+++|+ || ...+++.++++.
T Consensus 78 ~~~~~-~g----~~~~~i~~~l~~ 96 (207)
T 2j41_A 78 YVGNY-YG----TPVQYVKDTMDE 96 (207)
T ss_dssp ETTEE-EE----EEHHHHHHHHHT
T ss_pred ECCee-cC----CCHHHHHHHHHc
Confidence 66663 54 235667766653
No 269
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.47 E-value=3e-08 Score=108.04 Aligned_cols=83 Identities=18% Similarity=0.176 Sum_probs=62.0
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHh--cccCCCCCeEEECCcccCCCChHHHHHh
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQ--RFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~--R~y~p~~G~I~IDG~dI~~i~l~~LR~~ 1120 (1178)
++++++++.|+.- + .+|.| .|++|+.++|+||+|||||||++.|+ ++.++.+|.+.+++.+..+ .....+++
T Consensus 7 ~~~~~i~tg~~~l-D-~~l~G---gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 80 (251)
T 2ehv_A 7 QPVRRVKSGIPGF-D-ELIEG---GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREMAS 80 (251)
T ss_dssp -CCCEECCSCTTT-G-GGTTT---SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHHHT
T ss_pred cccceeecCCHhH-H-HHhcC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHHHH
Confidence 6677888888632 1 24544 79999999999999999999999999 7756778888888765432 23344577
Q ss_pred ccccccccccc
Q 001041 1121 MGLVSQEPVLF 1131 (1178)
Q Consensus 1121 IsiV~Qdp~LF 1131 (1178)
+++++|++..+
T Consensus 81 ~g~~~~~~~~~ 91 (251)
T 2ehv_A 81 FGWDFEKYEKE 91 (251)
T ss_dssp TTCCHHHHHHT
T ss_pred cCCChHHHhhc
Confidence 99999987543
No 270
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.44 E-value=3.5e-08 Score=110.61 Aligned_cols=68 Identities=21% Similarity=0.221 Sum_probs=56.2
Q ss_pred cccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCC-eEEECCcccCCCChHHHHHhccccccccc
Q 001041 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG-HITLDGVEIQKLQLKWLRQQMGLVSQEPV 1129 (1178)
Q Consensus 1059 ~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G-~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~ 1129 (1178)
++|+++++.+++|+.++|+||+|||||||++.|++...|++| .|.+.+.+ .+...+++++..+.|+..
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~ 91 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVR 91 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCC
Confidence 379999999999999999999999999999999999999888 78665443 356677777666665543
No 271
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.43 E-value=2.6e-08 Score=103.76 Aligned_cols=141 Identities=21% Similarity=0.222 Sum_probs=74.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCC-----------CCCcEEECCeecCC--CCHHHHhcceEEEcCCCCCCcc--cHHH
Q 001041 414 TAALVGQSGSGKSTVISLIERFYDP-----------QAGEVLIDGINLKE--FQLQWIRKKIGLVSQEPVLFTG--SIKD 478 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~~-----------~~G~i~i~g~~~~~--~~~~~~r~~i~~v~Q~~~l~~~--ti~~ 478 (1178)
+++|+|++|||||||++.+.|...+ ..|+|.++|.++.- .+....++..++++|...-..+ ++.|
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 7899999999999999999997654 46889999865421 1111111112222221100000 0111
Q ss_pred HHhcCCCCCCHHHHHHHHHHhcHHHHHHh-CCCCcc-chhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHH
Q 001041 479 NIAYGKDDATTEEIRVATELANAAKFIDK-LPQGID-TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556 (1178)
Q Consensus 479 ni~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~g~~-t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~ 556 (1178)
+ .+.......... .+.+.. -+...- -.++.+ ..|..-..+....||++..+|+++++| ||++|.+
T Consensus 111 ~-------~~~~s~~~~~~~---~~~~~~~~~~~~~i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~ 177 (191)
T 1oix_A 111 I-------AKHLTYENVERW---LKELRDHADSNIVIMLVGNK-SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDST 177 (191)
T ss_dssp T-------TCHHHHHTHHHH---HHHHHHHSCTTCEEEEEEEC-GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCT
T ss_pred C-------cCHHHHHHHHHH---HHHHHHhcCCCCcEEEEEEC-cccccccccCHHHHHHHHHHcCCEEEE--EeCCCCC
Confidence 0 111111110000 001111 011100 111221 112222223477899999999999999 9999999
Q ss_pred hHHHHHHHHHH
Q 001041 557 SEKVVQEALDR 567 (1178)
Q Consensus 557 ~~~~i~~~i~~ 567 (1178)
....+.+.+.+
T Consensus 178 ~v~~l~~~l~~ 188 (191)
T 1oix_A 178 NVEAAFQTILT 188 (191)
T ss_dssp THHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 88888777754
No 272
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.42 E-value=4e-08 Score=101.66 Aligned_cols=74 Identities=24% Similarity=0.383 Sum_probs=61.8
Q ss_pred eEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-------------CCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCC
Q 001041 406 SISISSGTTAALVGQSGSGKSTVISLIERFYD-------------PQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLF 472 (1178)
Q Consensus 406 ~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-------------~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~ 472 (1178)
|+...+|++++|+||||||||||++.|++.++ |..|+ ++|++...++.+.+++.+ .|+..++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle 87 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLE 87 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEE
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhh
Confidence 34455899999999999999999999999886 66787 699998888999888765 6899999
Q ss_pred cccHHHHHhcCCC
Q 001041 473 TGSIKDNIAYGKD 485 (1178)
Q Consensus 473 ~~ti~~ni~~~~~ 485 (1178)
.+++.+|. +|.+
T Consensus 88 ~~~~~~n~-YGt~ 99 (197)
T 3ney_A 88 FGSYQGNM-FGTK 99 (197)
T ss_dssp EEEETTEE-EEEE
T ss_pred hhhhhcee-cccc
Confidence 99999994 7754
No 273
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.42 E-value=2.5e-08 Score=105.46 Aligned_cols=78 Identities=19% Similarity=0.235 Sum_probs=54.9
Q ss_pred cceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccccccccccccccHHHHHhcC
Q 001041 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142 (1178)
Q Consensus 1063 ~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g 1142 (1178)
++-=++++|+.++|+|++||||||++++|.+.++ .+.+|+||+++|++ +|+.++
T Consensus 13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~~ 66 (207)
T 2qt1_A 13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIETD 66 (207)
T ss_dssp -CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCBC
T ss_pred cccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhcc
Confidence 4445788999999999999999999999999875 47899999999987 677654
Q ss_pred CCCCCCHHHHHHHHHHcCchHHHhh
Q 001041 1143 KGGDATEAEIQAASEMANAHKFICS 1167 (1178)
Q Consensus 1143 ~~~~asdeei~~Al~~A~~~dfI~~ 1167 (1178)
.. ...+.++.++++.+.+.++|.+
T Consensus 67 ~~-~~~~~~~~~~~~~~~l~~~i~~ 90 (207)
T 2qt1_A 67 KN-GFLQYDVLEALNMEKMMSAISC 90 (207)
T ss_dssp TT-SCBCCSSGGGBCHHHHHHHHHH
T ss_pred cc-CCChhHHHHHhHHHHHHHHHHH
Confidence 32 2222223333333444444444
No 274
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.41 E-value=3.6e-08 Score=108.80 Aligned_cols=80 Identities=20% Similarity=0.204 Sum_probs=69.7
Q ss_pred cccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcccccccc-ccc-cccHH
Q 001041 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEP-VLF-NDTIR 1136 (1178)
Q Consensus 1059 ~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp-~LF-~gTIr 1136 (1178)
.+++++++++++| ++|+||+|||||||+++|.+.+.+ |.|.++|.++.+......+++++.++|++ .++ .-++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 4899999999999 999999999999999999999887 79999999998877788889999999996 333 23677
Q ss_pred HHHhcC
Q 001041 1137 ANIAYG 1142 (1178)
Q Consensus 1137 eNI~~g 1142 (1178)
|||...
T Consensus 110 Deid~~ 115 (274)
T 2x8a_A 110 DEVDAL 115 (274)
T ss_dssp ETCTTT
T ss_pred ehhhhh
Confidence 888753
No 275
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.39 E-value=3.1e-08 Score=107.19 Aligned_cols=52 Identities=25% Similarity=0.441 Sum_probs=35.6
Q ss_pred cEEEeee-EEeCCCCCCccccccceEEeeC---CCEEEEEcCCCCCHHHHHHHHhccc
Q 001041 1042 EIELHHV-SFKYPSRPDVQVFRDLNLKIRA---GKTVALVGESGSGKSTVVSLLQRFY 1095 (1178)
Q Consensus 1042 ~I~f~nV-sf~Y~~~~~~~vL~~isf~I~~---Ge~vaIVG~SGSGKSTL~~lL~R~y 1095 (1178)
-++++|| +|+|.+ +.++|+|+||+|++ |++++|+|++||||||++++|.+.+
T Consensus 17 ~l~~~~~~~~~~~~--~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDE--EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecC--cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 999932 34699999999999 9999999999999999999999843
No 276
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.37 E-value=1.6e-07 Score=98.55 Aligned_cols=70 Identities=17% Similarity=0.100 Sum_probs=52.6
Q ss_pred eEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHH-HHHhccccccccccccc-cHHHHHh
Q 001041 1065 NLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW-LRQQMGLVSQEPVLFND-TIRANIA 1140 (1178)
Q Consensus 1065 sf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~-LR~~IsiV~Qdp~LF~g-TIreNI~ 1140 (1178)
.++.++|+.++|+|++||||||++++|.+.+ |.+.+||.++.. ... .+..+++++|++.++.. ++.+|+.
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 94 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHS--PENIATMQRGIPLTDEDRWPWLRSLAEWM 94 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSC--HHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEccccccc--HHHHHHHhcCCCCCCcccccHHHHHHHHH
Confidence 4677899999999999999999999999987 999999998853 222 33468999999876643 5666653
No 277
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.35 E-value=2.8e-08 Score=104.43 Aligned_cols=52 Identities=29% Similarity=0.424 Sum_probs=47.5
Q ss_pred cccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeE--EECCcccCC
Q 001041 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI--TLDGVEIQK 1111 (1178)
Q Consensus 1059 ~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I--~IDG~dI~~ 1111 (1178)
.+.+..++..++|+.++|+|+|||||||++++|.+.+. ..|.+ ++||.+++.
T Consensus 13 ~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~~ 66 (200)
T 3uie_A 13 EKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVRH 66 (200)
T ss_dssp CHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHTT
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhhh
Confidence 46788999999999999999999999999999999997 78998 999998864
No 278
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.35 E-value=3.4e-07 Score=108.76 Aligned_cols=177 Identities=11% Similarity=0.160 Sum_probs=106.6
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCC-cEEECCeecCCCCHHHHhcce-EEEcCCCCCCcccHH
Q 001041 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG-EVLIDGINLKEFQLQWIRKKI-GLVSQEPVLFTGSIK 477 (1178)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G-~i~i~g~~~~~~~~~~~r~~i-~~v~Q~~~l~~~ti~ 477 (1178)
+.|+++..-+++|+++.|.|++|+|||||+..+++...+..| .|.+.+. +.+...++.++ +....-+ .
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~---E~s~~~l~~r~~~~~~~~~-------~ 260 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL---EMSAQQLVMRMLCAEGNIN-------A 260 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES---SSCHHHHHHHHHHHHHTCC-------H
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC---CCCHHHHHHHHHHHHcCCC-------H
Confidence 467787777999999999999999999999999987766445 5655432 23334443332 1111100 0
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhc--cCCCEEEEeCCCCCCCH
Q 001041 478 DNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL--KDPRILLLDEATSALDA 555 (1178)
Q Consensus 478 ~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~--~~~~illlDe~ts~lD~ 555 (1178)
+.+.-| ..++++...+.+.. +.+...| -.+.+ ..++|++|.+ +.+|++. .+|+++++|+++.-.+.
T Consensus 261 ~~l~~g--~l~~~~~~~~~~a~---~~l~~~~----l~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~ 328 (454)
T 2r6a_A 261 QNLRTG--KLTPEDWGKLTMAM---GSLSNAG----IYIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGS 328 (454)
T ss_dssp HHHHTS--CCCHHHHHHHHHHH---HHHHSSC----EEEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCS
T ss_pred HHHhcC--CCCHHHHHHHHHHH---HHHhcCC----EEEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccC
Confidence 122222 23444433332222 2233222 12222 2478999876 5667665 57999999999998753
Q ss_pred H-----hH---HHHHHHHHHHh--cCCeEEEEec---------C--cc--------hhh-ccCEEEEEeCCEE
Q 001041 556 E-----SE---KVVQEALDRIM--VNRTTVIVAH---------R--LS--------TVR-NADMIAVIHRGKI 598 (1178)
Q Consensus 556 ~-----~~---~~i~~~i~~~~--~~~t~i~itH---------~--~~--------~~~-~~d~i~~l~~G~i 598 (1178)
. .. ..+.+.++.+. .++++|+++| + +. .+. .||.|+.|..++.
T Consensus 329 ~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 329 GRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp CC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 2 11 33444555443 3789999999 1 32 343 4999999987654
No 279
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.34 E-value=1.2e-07 Score=100.21 Aligned_cols=70 Identities=26% Similarity=0.264 Sum_probs=58.6
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhcccCC-CCCeEE----------ECCcccCCCChHHHHHhccccccccccccccHHH
Q 001041 1069 RAGKTVALVGESGSGKSTVVSLLQRFYDP-DAGHIT----------LDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRA 1137 (1178)
Q Consensus 1069 ~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p-~~G~I~----------IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIre 1137 (1178)
++|+.++|+||||||||||+++|.+.+++ ..+.+. .+|++..-++.+.+++.+ .|+.+++.+++.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~ 82 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEYVG 82 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEEcc
Confidence 68999999999999999999999999976 333332 578888888999998876 6899999998888
Q ss_pred HHhcC
Q 001041 1138 NIAYG 1142 (1178)
Q Consensus 1138 NI~~g 1142 (1178)
| .||
T Consensus 83 ~-~yg 86 (208)
T 3tau_A 83 N-YYG 86 (208)
T ss_dssp E-EEE
T ss_pred c-cCC
Confidence 7 466
No 280
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.33 E-value=1.4e-07 Score=117.09 Aligned_cols=135 Identities=15% Similarity=0.131 Sum_probs=96.0
Q ss_pred eEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC--CCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcC
Q 001041 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDP--QAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG 483 (1178)
Q Consensus 406 ~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~--~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~ 483 (1178)
++.+++|.+++|+|++|+|||||++.|++...+ ..|+| .+|.++.+....+.++.+++.+|.+.++..+++.||.-.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 456788999999999999999999999987654 67888 788889999998888899999999988877777777521
Q ss_pred CCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHH
Q 001041 484 KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563 (1178)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~ 563 (1178)
|...+ ... ....-. -..+..++++| |+.++|+.+...+..
T Consensus 82 -pG~~~--f~~----------------------------------~~~~~l--~~ad~~ilVvD-~~~g~~~qt~~~~~~ 121 (665)
T 2dy1_A 82 -PGYGD--FVG----------------------------------EIRGAL--EAADAALVAVS-AEAGVQVGTERAWTV 121 (665)
T ss_dssp -CCSGG--GHH----------------------------------HHHHHH--HHCSEEEEEEE-TTTCSCHHHHHHHHH
T ss_pred -CCccc--hHH----------------------------------HHHHHH--hhcCcEEEEEc-CCcccchhHHHHHHH
Confidence 11111 000 000001 12355678888 999999988866544
Q ss_pred HHHHHhcCCeEEEEecCcchh
Q 001041 564 ALDRIMVNRTTVIVAHRLSTV 584 (1178)
Q Consensus 564 ~i~~~~~~~t~i~itH~~~~~ 584 (1178)
+.. .+..+|++.|+++..
T Consensus 122 ~~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 122 AER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHH---TTCCEEEEEECGGGC
T ss_pred HHH---ccCCEEEEecCCchh
Confidence 432 367888888887754
No 281
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.28 E-value=2.5e-07 Score=97.04 Aligned_cols=45 Identities=22% Similarity=0.138 Sum_probs=25.0
Q ss_pred eCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhccc
Q 001041 1051 KYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFY 1095 (1178)
Q Consensus 1051 ~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y 1095 (1178)
+|++++..++++||||++++|+.++|+|++||||||+++.|.+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 576666678999999999999999999999999999999999876
No 282
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.28 E-value=3.4e-07 Score=117.75 Aligned_cols=74 Identities=22% Similarity=0.205 Sum_probs=57.1
Q ss_pred ccEEEee-----eEEeCCCCCCccccccceEEeeC-------CCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcc
Q 001041 1041 GEIELHH-----VSFKYPSRPDVQVFRDLNLKIRA-------GKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVE 1108 (1178)
Q Consensus 1041 g~I~f~n-----Vsf~Y~~~~~~~vL~~isf~I~~-------Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~d 1108 (1178)
+.|+++| |++.|++ +.+|++|++|++++ |+.++|+||+||||||+++.+ ++..+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~--~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~----------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFG--DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV----------- 814 (1022)
T ss_dssp CCEEEEEECCCC------C--CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-----------
T ss_pred ceEEEEeccccEEEEEecC--CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-----------
Confidence 4599999 9999952 34699999999988 999999999999999999999 99863
Q ss_pred cCCCChHHHHHhcc-ccccccccccccHHHHH
Q 001041 1109 IQKLQLKWLRQQMG-LVSQEPVLFNDTIRANI 1139 (1178)
Q Consensus 1109 I~~i~l~~LR~~Is-iV~Qdp~LF~gTIreNI 1139 (1178)
+.+++ +|||++. .-|+.|||
T Consensus 815 ---------~aqiG~~Vpq~~~--~l~v~d~I 835 (1022)
T 2o8b_B 815 ---------MAQMGCYVPAEVC--RLTPIDRV 835 (1022)
T ss_dssp ---------HHTTTCCEESSEE--EECCCSBE
T ss_pred ---------HhheeEEeccCcC--CCCHHHHH
Confidence 45677 9999984 55677776
No 283
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.28 E-value=1.2e-07 Score=97.38 Aligned_cols=51 Identities=18% Similarity=0.234 Sum_probs=40.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcccccccc
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEP 1128 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp 1128 (1178)
+++|+||+|||||||+++|++++. |.++|.+..+......++++++++|++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~ 52 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT 52 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC
Confidence 689999999999999999999995 778898876554335688999999987
No 284
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.27 E-value=8.1e-08 Score=98.99 Aligned_cols=71 Identities=21% Similarity=0.216 Sum_probs=53.2
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccCCC-CCCcEE----------ECCeecCCCCHHHHhcceEEEcCCCCCCcccHHH
Q 001041 410 SSGTTAALVGQSGSGKSTVISLIERFYDP-QAGEVL----------IDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKD 478 (1178)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~~~-~~G~i~----------i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ 478 (1178)
.+|++++|+||||||||||++.|.+.+++ ..|.|. ++|++....+.+.++.. +.|+.+++.+++.+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 79 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHED 79 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcC
Confidence 36999999999999999999999998863 345443 35666666666666653 56777888888888
Q ss_pred HHhcCC
Q 001041 479 NIAYGK 484 (1178)
Q Consensus 479 ni~~~~ 484 (1178)
| .+|.
T Consensus 80 n-~yg~ 84 (180)
T 1kgd_A 80 A-MYGT 84 (180)
T ss_dssp E-EEEE
T ss_pred c-cccc
Confidence 8 4554
No 285
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.27 E-value=1.7e-07 Score=104.82 Aligned_cols=81 Identities=10% Similarity=0.133 Sum_probs=60.3
Q ss_pred ccccEEEeeeEEeCCCCCCccccc--------------cceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCC-CC-eE
Q 001041 1039 VKGEIELHHVSFKYPSRPDVQVFR--------------DLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPD-AG-HI 1102 (1178)
Q Consensus 1039 ~~g~I~f~nVsf~Y~~~~~~~vL~--------------~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~-~G-~I 1102 (1178)
.+|.|+|+||+|.||. ++.+|+ |+++.|.+||+++|||++|+|||||+++|.|+..-. .+ .+
T Consensus 130 ~~~ri~Fe~ltp~yP~--er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~ 207 (422)
T 3ice_A 130 ARNKILFENLTPLHAN--SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVL 207 (422)
T ss_dssp HTTSCCTTTSCEESCC--SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEE
T ss_pred hcCCceeccccccCCC--CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeE
Confidence 4689999999999985 346899 999999999999999999999999999999986321 12 23
Q ss_pred EECCcccCCCChHHHHHhc
Q 001041 1103 TLDGVEIQKLQLKWLRQQM 1121 (1178)
Q Consensus 1103 ~IDG~dI~~i~l~~LR~~I 1121 (1178)
.+-+++-+.=...++.+.+
T Consensus 208 I~~lIGER~~Ev~~~~~~~ 226 (422)
T 3ice_A 208 MVLLIDERPEEVTEMQRLV 226 (422)
T ss_dssp EEEEESSCHHHHHHHHTTC
T ss_pred EEEEecCChHHHHHHHHHh
Confidence 3445554433333443333
No 286
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.23 E-value=2.7e-07 Score=103.70 Aligned_cols=81 Identities=15% Similarity=0.183 Sum_probs=65.1
Q ss_pred ccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCCh----HHH-----HHhcccc-ccccc
Q 001041 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL----KWL-----RQQMGLV-SQEPV 1129 (1178)
Q Consensus 1060 vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l----~~L-----R~~IsiV-~Qdp~ 1129 (1178)
+++++||++++|+.++|+|++|+||||++..|.+.+.+.+|+|.+.+.|+..... ..+ |..+.++ +|++.
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~ 173 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLN 173 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTT
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCC
Confidence 4578999999999999999999999999999999999999999999999865432 344 6678999 77755
Q ss_pred cccc-cHHHHHh
Q 001041 1130 LFND-TIRANIA 1140 (1178)
Q Consensus 1130 LF~g-TIreNI~ 1140 (1178)
+... ++++|+.
T Consensus 174 ~~p~~~~~~~l~ 185 (320)
T 1zu4_A 174 ADPASVVFDAIK 185 (320)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 4433 5677764
No 287
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.23 E-value=2.7e-07 Score=95.82 Aligned_cols=61 Identities=21% Similarity=0.131 Sum_probs=49.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccccccccccc-cccHHHHHh
Q 001041 1071 GKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIA 1140 (1178)
Q Consensus 1071 Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF-~gTIreNI~ 1140 (1178)
|+.++|+|++||||||+++.|.+ |.+|.+.+||.++.+. ..+++++|+...+ ..|+++|+.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~ 63 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNIT 63 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHH
Confidence 68899999999999999999987 6789999999887543 2468888877443 558888875
No 288
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.23 E-value=2.9e-07 Score=114.76 Aligned_cols=84 Identities=17% Similarity=0.196 Sum_probs=61.2
Q ss_pred cccEEEeeeEEeCCCC--CCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccC-CCCCeEEECCcccCCCChHH
Q 001041 1040 KGEIELHHVSFKYPSR--PDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD-PDAGHITLDGVEIQKLQLKW 1116 (1178)
Q Consensus 1040 ~g~I~f~nVsf~Y~~~--~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~-p~~G~I~IDG~dI~~i~l~~ 1116 (1178)
.+.|++++. +||-- .+.+|++|+||+ |+.++|+||+||||||+++++.++.. ++.|.+. + .
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v----p-------a 611 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV----P-------A 611 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB----S-------S
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee----e-------h
Confidence 457999987 66631 235799999999 99999999999999999999999974 6788753 1 1
Q ss_pred HHHhcccccccccccc-ccHHHHHhcC
Q 001041 1117 LRQQMGLVSQEPVLFN-DTIRANIAYG 1142 (1178)
Q Consensus 1117 LR~~IsiV~Qdp~LF~-gTIreNI~~g 1142 (1178)
.+.++++|+| +|. -|+.||+..|
T Consensus 612 ~~~~i~~v~~---i~~~~~~~d~l~~g 635 (765)
T 1ewq_A 612 EEAHLPLFDG---IYTRIGASDDLAGG 635 (765)
T ss_dssp SEEEECCCSE---EEEECCC------C
T ss_pred hccceeeHHH---hhccCCHHHHHHhc
Confidence 2467899988 565 4899999876
No 289
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.20 E-value=1.4e-08 Score=116.20 Aligned_cols=137 Identities=13% Similarity=0.157 Sum_probs=85.8
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHH
Q 001041 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDN 479 (1178)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~n 479 (1178)
.+++++++.+++|+.++|+||+|||||||+++|.|.+ +|.+..-. ... +.++..+++++|...++ .|+
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~~--~~~---~~~~~~lg~~~q~~~~l----~dd 224 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNVN--LPL---DRLNFELGVAIDQFLVV----FED 224 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECCS--SCT---TTHHHHHGGGTTCSCEE----ETT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEEe--ccc---hhHHHHHHHhcchhHHH----HHH
Confidence 5899999999999999999999999999999999964 67765411 111 12233478889887542 233
Q ss_pred HhcCCC---CC-CHHHHHHHHHHhcHHHHHHh---------CCCCcc-----chhcCCCCCCChHHHHHHHHHHHhccCC
Q 001041 480 IAYGKD---DA-TTEEIRVATELANAAKFIDK---------LPQGID-----TLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1178)
Q Consensus 480 i~~~~~---~~-~~~~~~~~~~~~~~~~~i~~---------~~~g~~-----t~~~~~g~~lSgGqkqri~lARal~~~~ 541 (1178)
+.+... .. ....+. ....+.+.+.. -|+-++ -.+..+...+++|.+||++.+.+++.+|
T Consensus 225 ~~~~~~~~r~l~~~~~~~---~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~p 301 (377)
T 1svm_A 225 VKGTGGESRDLPSGQGIN---NLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKD 301 (377)
T ss_dssp CCCSTTTTTTCCCCSHHH---HHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCH
T ss_pred HHHHHHHHhhccccCcch---HHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCC
Confidence 332211 00 000000 01112222210 000001 1233455668999999999998889999
Q ss_pred CEEE-EeCCCC
Q 001041 542 RILL-LDEATS 551 (1178)
Q Consensus 542 ~ill-lDe~ts 551 (1178)
++++ ||+|+.
T Consensus 302 DLliyLd~~~~ 312 (377)
T 1svm_A 302 YLKHCLERSEF 312 (377)
T ss_dssp HHHHHHHTCTH
T ss_pred CeEEEEeCCHH
Confidence 9988 999987
No 290
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.20 E-value=2e-07 Score=100.24 Aligned_cols=65 Identities=22% Similarity=0.197 Sum_probs=52.6
Q ss_pred ceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCC------ChHH----HHHhcccccccccccc
Q 001041 1064 LNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL------QLKW----LRQQMGLVSQEPVLFN 1132 (1178)
Q Consensus 1064 isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i------~l~~----LR~~IsiV~Qdp~LF~ 1132 (1178)
-+.+.++|+.++|+|++||||||++++|.++ +|+|.++|.|+... .+.. .++.+++++|++.+|.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 3456689999999999999999999999998 79999999987543 1211 2567999999987764
No 291
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.18 E-value=2.9e-07 Score=97.19 Aligned_cols=51 Identities=18% Similarity=0.222 Sum_probs=43.0
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcC
Q 001041 407 ISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG 483 (1178)
Q Consensus 407 l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~ 483 (1178)
=++++|++++|+|++||||||+++.|.+.++ .+.+++||+.++.+ +|+.++
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~~ 66 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIETD 66 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCBC
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhcc
Confidence 3577899999999999999999999999874 38899999988876 566543
No 292
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.17 E-value=2.5e-07 Score=114.81 Aligned_cols=106 Identities=25% Similarity=0.197 Sum_probs=85.1
Q ss_pred eEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCC--CCCeEEECCcccCCCChHHHHHhccccccccccccccHHHHHhc-
Q 001041 1065 NLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP--DAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAY- 1141 (1178)
Q Consensus 1065 sf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p--~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~- 1141 (1178)
|+++++|.+++|||++|+|||||++.|++...+ ..|+| .+|.++.+....+.++.+++.+|.+.++.++++.||.-
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 467889999999999999999999999988765 78999 89999999999999999999999999999999999852
Q ss_pred -CCCCCCCHHHHHHHHHHcCchHHHhhcccccc
Q 001041 1142 -GKGGDATEAEIQAASEMANAHKFICSLQQVRT 1173 (1178)
Q Consensus 1142 -g~~~~asdeei~~Al~~A~~~dfI~~LP~gld 1173 (1178)
|. .+. ..++..+++.++..-++-...+|++
T Consensus 82 pG~-~~f-~~~~~~~l~~ad~~ilVvD~~~g~~ 112 (665)
T 2dy1_A 82 PGY-GDF-VGEIRGALEAADAALVAVSAEAGVQ 112 (665)
T ss_dssp CCS-GGG-HHHHHHHHHHCSEEEEEEETTTCSC
T ss_pred CCc-cch-HHHHHHHHhhcCcEEEEEcCCcccc
Confidence 31 122 3678888888877655555455544
No 293
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.17 E-value=2.6e-06 Score=100.51 Aligned_cols=114 Identities=21% Similarity=0.289 Sum_probs=73.9
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHH
Q 001041 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDN 479 (1178)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~n 479 (1178)
..++++++.+++| +.|+||+|+|||||++++.+.... .+-++. ..+.
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~----------------------~f~~is---------~~~~ 85 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV----------------------PFFHIS---------GSDF 85 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC----------------------CEEEEE---------GGGT
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC----------------------CeeeCC---------HHHH
Confidence 3567778888887 899999999999999999985421 011110 0000
Q ss_pred HhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC--------
Q 001041 480 IAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS-------- 551 (1178)
Q Consensus 480 i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts-------- 551 (1178)
+. . .+| .|++++|-.+++|....|.|+++||+-+
T Consensus 86 ~~-------------------------~-------~~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~ 127 (476)
T 2ce7_A 86 VE-------------------------L-------FVG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAG 127 (476)
T ss_dssp TT-------------------------C-------CTT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC----
T ss_pred HH-------------------------H-------Hhc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccc
Confidence 00 0 011 2678899999999999999999999943
Q ss_pred --CCCHHhHHHHHHHHHHH-----hcCCeEEEEecCcchh
Q 001041 552 --ALDAESEKVVQEALDRI-----MVNRTTVIVAHRLSTV 584 (1178)
Q Consensus 552 --~lD~~~~~~i~~~i~~~-----~~~~t~i~itH~~~~~ 584 (1178)
+.|.+..+.+.+.+..+ ..+..+|..||+++.+
T Consensus 128 ~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 128 LGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp -----CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred cCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 55655555554444432 1345777889998654
No 294
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.16 E-value=2.4e-07 Score=100.73 Aligned_cols=68 Identities=16% Similarity=0.224 Sum_probs=56.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHh---cccCCCCCeEEECCcccCCCChHHHHHhcccccccccccc-ccHHHHHhc
Q 001041 1070 AGKTVALVGESGSGKSTVVSLLQ---RFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFN-DTIRANIAY 1141 (1178)
Q Consensus 1070 ~Ge~vaIVG~SGSGKSTL~~lL~---R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~-gTIreNI~~ 1141 (1178)
+++.++|+|++||||||++++|. ++..|+.|+|.++|.+.. ..++..+..++|++.++. .|+.+|+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~ 97 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMS 97 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 47999999999999999999999 999999999999987642 246677788888877654 588888853
No 295
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.15 E-value=6.5e-07 Score=93.70 Aligned_cols=36 Identities=22% Similarity=0.228 Sum_probs=29.9
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHH
Q 001041 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI 568 (1178)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~ 568 (1178)
...||++..+|++.++| |||+|......+.+.+.+.
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTE 165 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHH
Confidence 45689999999999999 9999999877777766543
No 296
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.15 E-value=2.2e-08 Score=114.15 Aligned_cols=94 Identities=15% Similarity=0.208 Sum_probs=73.6
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCC-------CEEEEEcCCCCCHHHHHHHHhccc----CCCCCeEEECCcccCC
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAG-------KTVALVGESGSGKSTVVSLLQRFY----DPDAGHITLDGVEIQK 1111 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~G-------e~vaIVG~SGSGKSTL~~lL~R~y----~p~~G~I~IDG~dI~~ 1111 (1178)
++.++++..|.+ ..+++++++.|++| +.++|+||+|+|||||++++++.. .+.+|.+..+|.|+..
T Consensus 19 lr~~~l~~~~g~---~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~ 95 (334)
T 1in4_A 19 LRPKSLDEFIGQ---ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAA 95 (334)
T ss_dssp TSCSSGGGCCSC---HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHH
T ss_pred cCCccHHHccCc---HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHH
Confidence 445566666742 35899999999987 889999999999999999999998 6788998888887754
Q ss_pred CChHHHHHhccccccccccccccHHHHHh
Q 001041 1112 LQLKWLRQQMGLVSQEPVLFNDTIRANIA 1140 (1178)
Q Consensus 1112 i~l~~LR~~IsiV~Qdp~LF~gTIreNI~ 1140 (1178)
+.....+..|.+|+|...|+. ++.|++.
T Consensus 96 ~~~~~~~~~v~~iDE~~~l~~-~~~e~L~ 123 (334)
T 1in4_A 96 ILTSLERGDVLFIDEIHRLNK-AVEELLY 123 (334)
T ss_dssp HHHHCCTTCEEEEETGGGCCH-HHHHHHH
T ss_pred HHHHccCCCEEEEcchhhcCH-HHHHHHH
Confidence 321112457899999888876 8888874
No 297
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.14 E-value=1.1e-06 Score=95.00 Aligned_cols=80 Identities=18% Similarity=0.256 Sum_probs=59.0
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhc--ccCC-----CCCeEEECCcccC-CCChHHHHHhccccccccccccccHHHH
Q 001041 1067 KIRAGKTVALVGESGSGKSTVVSLLQR--FYDP-----DAGHITLDGVEIQ-KLQLKWLRQQMGLVSQEPVLFNDTIRAN 1138 (1178)
Q Consensus 1067 ~I~~Ge~vaIVG~SGSGKSTL~~lL~R--~y~p-----~~G~I~IDG~dI~-~i~l~~LR~~IsiV~Qdp~LF~gTIreN 1138 (1178)
-|++|+.++|+||+|||||||+..|++ ...| ..|.+++++.+.- .-.+..+++++++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 589999999999999999999999999 4554 6789999998732 22244566788988875 5678
Q ss_pred HhcCCCCCCCHHHHHHH
Q 001041 1139 IAYGKGGDATEAEIQAA 1155 (1178)
Q Consensus 1139 I~~g~~~~asdeei~~A 1155 (1178)
+.+.. ..+.++..+.
T Consensus 93 ~~~~~--~~~~~~~~~~ 107 (243)
T 1n0w_A 93 VAYAR--AFNTDHQTQL 107 (243)
T ss_dssp EEEEE--CCSHHHHHHH
T ss_pred eEEEe--cCCHHHHHHH
Confidence 76642 2344444433
No 298
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.10 E-value=1.9e-07 Score=112.17 Aligned_cols=90 Identities=29% Similarity=0.316 Sum_probs=64.2
Q ss_pred EEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCC-eEE-ECCcccCC-------CC---hHHHHHhccccccccccccc
Q 001041 1066 LKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG-HIT-LDGVEIQK-------LQ---LKWLRQQMGLVSQEPVLFND 1133 (1178)
Q Consensus 1066 f~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G-~I~-IDG~dI~~-------i~---l~~LR~~IsiV~Qdp~LF~g 1133 (1178)
..+++|+.++|+|+||||||||+++|.+.+.|++| +|. +||.++.+ ++ ....++++++|+|+.
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l----- 438 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEI----- 438 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHH-----
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHH-----
Confidence 46889999999999999999999999999999987 785 99988753 12 223567789999983
Q ss_pred cHHHHHhcCCC---CCCCHHHHHHHHHHcC
Q 001041 1134 TIRANIAYGKG---GDATEAEIQAASEMAN 1160 (1178)
Q Consensus 1134 TIreNI~~g~~---~~asdeei~~Al~~A~ 1160 (1178)
+..+|+.+... .....++++++++..+
T Consensus 439 ~~~~~ivi~~~~~~~~~~r~~~r~lL~~~g 468 (552)
T 3cr8_A 439 TKNRGIAICAPIAPYRQTRRDVRAMIEAVG 468 (552)
T ss_dssp HHTTCEEEECCCCCCHHHHHHHHHHHHTTS
T ss_pred HhcCCEEEEecCCccHHHHHHHHHHHHHcC
Confidence 34455544311 0123445666666544
No 299
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.06 E-value=1.7e-06 Score=100.03 Aligned_cols=70 Identities=24% Similarity=0.342 Sum_probs=53.7
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHH--hcccCCCC-----CeEEECCccc-CCCChHHHHHhccccccccccccccHHHH
Q 001041 1067 KIRAGKTVALVGESGSGKSTVVSLL--QRFYDPDA-----GHITLDGVEI-QKLQLKWLRQQMGLVSQEPVLFNDTIRAN 1138 (1178)
Q Consensus 1067 ~I~~Ge~vaIVG~SGSGKSTL~~lL--~R~y~p~~-----G~I~IDG~dI-~~i~l~~LR~~IsiV~Qdp~LF~gTIreN 1138 (1178)
-|++|+.++|+||+|||||||+..| ....+++. +.|+||+.+. +...+..+++++++.+| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 5899999999999999999999944 45555543 4899999874 33334556678998877 67889
Q ss_pred HhcCC
Q 001041 1139 IAYGK 1143 (1178)
Q Consensus 1139 I~~g~ 1143 (1178)
+.+..
T Consensus 247 i~~~~ 251 (400)
T 3lda_A 247 VAYAR 251 (400)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 88764
No 300
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.06 E-value=4.4e-07 Score=98.11 Aligned_cols=52 Identities=27% Similarity=0.365 Sum_probs=36.1
Q ss_pred cEEEEeE-EEECCCCCCCccccceeEEEeC---CCEEEEEcCCCCcHHHHHHHHhccC
Q 001041 383 DIELRDV-YFSYPARPNEQIFSGFSISISS---GTTAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 383 ~i~~~~~-~~~y~~~~~~~~l~~i~l~i~~---g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
.++++|+ +|+|.+ +.++|+|+||++++ |++++|+|++||||||+.+.|.+.+
T Consensus 17 ~l~~~~~~~~~~~~--~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDE--EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecC--cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 999932 35799999999999 9999999999999999999999865
No 301
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.04 E-value=1.3e-06 Score=100.12 Aligned_cols=65 Identities=18% Similarity=0.268 Sum_probs=52.2
Q ss_pred cccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccccccccccc
Q 001041 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLF 1131 (1178)
Q Consensus 1059 ~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF 1131 (1178)
++|+++|+.+++|+.++|+||+|||||||+++|.+.+ +|.+..- + .+.+.++..++.+||...+|
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~--~---~~~~~~~~~lg~~~q~~~~l 221 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNV--N---LPLDRLNFELGVAIDQFLVV 221 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECC--S---SCTTTHHHHHGGGTTCSCEE
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEE--e---ccchhHHHHHHHhcchhHHH
Confidence 5899999999999999999999999999999999975 5777651 1 12233455689999998753
No 302
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.04 E-value=2.7e-06 Score=97.90 Aligned_cols=45 Identities=29% Similarity=0.319 Sum_probs=34.7
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhc--cCCCCCCcEEECC
Q 001041 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIER--FYDPQAGEVLIDG 447 (1178)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g--~~~~~~G~i~i~g 447 (1178)
.+|++++++++ .++|||++|||||||+++|.| ++++..|.++-..
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p 71 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRP 71 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSC
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcc
Confidence 47899999988 999999999999999999999 6677777765433
No 303
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.03 E-value=6.1e-07 Score=99.41 Aligned_cols=90 Identities=18% Similarity=0.187 Sum_probs=74.6
Q ss_pred EEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccc
Q 001041 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGL 1123 (1178)
Q Consensus 1044 ~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Isi 1123 (1178)
+++++...|. ...+++++++++++| ++|+||+|+|||||+++|.+... .|.|.++|.++.+......++++..
T Consensus 51 ~l~~l~~~~~---~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 123 (278)
T 1iy2_A 51 ELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 123 (278)
T ss_dssp HHHHHHHHHH---CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHH
T ss_pred HHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHH
Confidence 4567777774 235899999999999 99999999999999999999886 7999999999877777777888999
Q ss_pred cccccc-cc-cccHHHHHh
Q 001041 1124 VSQEPV-LF-NDTIRANIA 1140 (1178)
Q Consensus 1124 V~Qdp~-LF-~gTIreNI~ 1140 (1178)
++|++. .+ .-++.||+.
T Consensus 124 ~~~~~~~~~~~i~~iDeid 142 (278)
T 1iy2_A 124 LFETAKRHAPCIVFIDEID 142 (278)
T ss_dssp HHHHHHTSCSEEEEEETHH
T ss_pred HHHHHHhcCCcEEehhhhH
Confidence 999975 33 346778883
No 304
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.03 E-value=6.1e-07 Score=92.49 Aligned_cols=99 Identities=16% Similarity=0.143 Sum_probs=65.3
Q ss_pred ccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCc--ccCCCChH----HHHHhcccccccc-------
Q 001041 1062 RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGV--EIQKLQLK----WLRQQMGLVSQEP------- 1128 (1178)
Q Consensus 1062 ~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~--dI~~i~l~----~LR~~IsiV~Qdp------- 1128 (1178)
+++++++.+| .++|||+||||||||+.+|..+..+..|...-.+. ++-.-+.. ..+..|.+++|+|
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~ 96 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPID 96 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSS
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccC
Confidence 6889999999 99999999999999999999988887776544332 11111110 2356799999986
Q ss_pred ---ccccccHHHH----HhcCCCCCCCHHHHHHHHHHcCch
Q 001041 1129 ---VLFNDTIRAN----IAYGKGGDATEAEIQAASEMANAH 1162 (1178)
Q Consensus 1129 ---~LF~gTIreN----I~~g~~~~asdeei~~Al~~A~~~ 1162 (1178)
+.+..++..+ +.... ...+.+++.+.++..++.
T Consensus 97 ~~~~~i~r~~~~~~~~~~~i~g-~~~~~~~~~~~l~~~~l~ 136 (182)
T 3kta_A 97 EDEVVIRRRVYPDGRSSYWLNG-RRATRSEILDILTAAMIS 136 (182)
T ss_dssp SSEEEEEEEECTTSCEEEEETT-EEECHHHHHHHHHHTTCC
T ss_pred CcEEEEEEEEEeCCcEEEEECC-eEcCHHHHHHHHHHcCCC
Confidence 3333333221 11111 135678888888877654
No 305
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.03 E-value=1.6e-07 Score=111.38 Aligned_cols=128 Identities=18% Similarity=0.213 Sum_probs=90.2
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCC-CC-cccH
Q 001041 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPV-LF-TGSI 476 (1178)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~-l~-~~ti 476 (1178)
+..++++++.+++| +.|+||+|+|||||+++|.++.. .|.+.++|.++.+......++++..++|++. .. .-.+
T Consensus 53 ~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~ 128 (499)
T 2dhr_A 53 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVF 128 (499)
T ss_dssp GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEE
T ss_pred hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEE
Confidence 35789999999999 99999999999999999999875 6889999988766544444556778888764 22 2355
Q ss_pred HHHHh-cCCCCC-----CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCC
Q 001041 477 KDNIA-YGKDDA-----TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 550 (1178)
Q Consensus 477 ~~ni~-~~~~~~-----~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~t 550 (1178)
-|+|. ++.... ..++....+ ...+. .|||||+|+..+++|...+|++ |||++
T Consensus 129 IDEId~l~~~r~~~~~~~~~e~~~~l-----~~LL~---------------~Ldg~~~~~~viviAatn~p~~--LD~aL 186 (499)
T 2dhr_A 129 IDEIDAVGRKRGSGVGGGNDEREQTL-----NQLLV---------------EMDGFEKDTAIVVMAATNRPDI--LDPAL 186 (499)
T ss_dssp EECGGGTCCCSSSSTTTSSHHHHHHH-----HHHHH---------------HGGGCCSSCCCEEEECCSCGGG--SCTTT
T ss_pred EehHHHHHHhhccCcCCCcHHHHHHH-----HHHHH---------------HhcccccCccEEEEEecCChhh--cCccc
Confidence 67774 222111 112221111 11221 2678899999999999999987 89988
Q ss_pred CC
Q 001041 551 SA 552 (1178)
Q Consensus 551 s~ 552 (1178)
-.
T Consensus 187 lr 188 (499)
T 2dhr_A 187 LR 188 (499)
T ss_dssp SS
T ss_pred cc
Confidence 64
No 306
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.03 E-value=2e-06 Score=98.45 Aligned_cols=143 Identities=10% Similarity=0.208 Sum_probs=81.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCC-----------CCCCcEEECCeecCCCCHHHHhcceEEEcCCCCC----CcccHHH
Q 001041 414 TAALVGQSGSGKSTVISLIERFYD-----------PQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVL----FTGSIKD 478 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~-----------~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l----~~~ti~~ 478 (1178)
.++|+|++|||||||++.|.|... +..|.|.++|.++. +....|++.|.|.- |..|+ +
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~tl-~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVTL-S 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHHH-H
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHHH-H
Confidence 499999999999999999999764 56688999886542 22346666665532 22222 2
Q ss_pred HHh------cCCC-CCCHHHHHHHHHHhcHHHHHHhC--CCCccchhcCCCCCCChHHHHHHHHH----HHh-ccCCCEE
Q 001041 479 NIA------YGKD-DATTEEIRVATELANAAKFIDKL--PQGIDTLVGEHGTQLSGGQKQRIAIA----RAI-LKDPRIL 544 (1178)
Q Consensus 479 ni~------~~~~-~~~~~~~~~~~~~~~~~~~i~~~--~~g~~t~~~~~g~~lSgGqkqri~lA----Ral-~~~~~il 544 (1178)
.+. +-.+ ...........+ ...+.+..+ ++----.++.+...+|+|++||+.++ +++ ..++++
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~--~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~- 330 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQ--SSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV- 330 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHH--HHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE-
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHH--HHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE-
Confidence 221 1111 011111111111 111222222 11111223445555788899988877 666 444454
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHHh
Q 001041 545 LLDEATSALDAESEKVVQEALDRIM 569 (1178)
Q Consensus 545 llDe~ts~lD~~~~~~i~~~i~~~~ 569 (1178)
+|+||+|.+....+.+.|.+..
T Consensus 331 ---~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 331 ---IPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp ---EECBTTTTBSHHHHHHHHHHHH
T ss_pred ---EEEECCCCcCHHHHHHHHHHHh
Confidence 7999999998888877776643
No 307
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.02 E-value=6.6e-07 Score=97.66 Aligned_cols=90 Identities=18% Similarity=0.178 Sum_probs=74.8
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
.+++++...|. ...+++++++++++| ++|+||+|+|||||+++|.+... .|.|.++|.++.+......++++.
T Consensus 26 ~~l~~l~~~~~---~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~ 98 (254)
T 1ixz_A 26 EELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR 98 (254)
T ss_dssp HHHHHHHHHHH---CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHH
T ss_pred HHHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHH
Confidence 45677777774 235899999999999 99999999999999999999886 799999999987777777788899
Q ss_pred ccccccc-cc-cccHHHHH
Q 001041 1123 LVSQEPV-LF-NDTIRANI 1139 (1178)
Q Consensus 1123 iV~Qdp~-LF-~gTIreNI 1139 (1178)
.++|++. .+ .-++.||+
T Consensus 99 ~~~~~~~~~~~~i~~~Dei 117 (254)
T 1ixz_A 99 DLFETAKRHAPCIVFIDEI 117 (254)
T ss_dssp HHHHHHTTSSSEEEEEETH
T ss_pred HHHHHHHhcCCeEEEehhh
Confidence 9999874 33 34667777
No 308
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.00 E-value=1.9e-06 Score=90.29 Aligned_cols=45 Identities=16% Similarity=0.083 Sum_probs=25.1
Q ss_pred ECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC
Q 001041 392 SYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 392 ~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
+|+..+..+.++|+||++++|++++|+|++||||||+.+.|.+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 455556678999999999999999999999999999999999876
No 309
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.98 E-value=1.1e-06 Score=92.19 Aligned_cols=59 Identities=15% Similarity=0.180 Sum_probs=41.3
Q ss_pred eEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCC
Q 001041 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEP 469 (1178)
Q Consensus 406 ~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~ 469 (1178)
.++.++|++++|+|++||||||++++|.+.+ |.+.++|.++.... ...+..+++++|++
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~~-~~~~~~~g~~~~~~ 81 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSPE-NIATMQRGIPLTDE 81 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCHH-HHHHHHTTCCCCHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccHH-HHHHHhcCCCCCCc
Confidence 3566789999999999999999999999987 89999987664211 11122456777653
No 310
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.97 E-value=1.3e-06 Score=93.80 Aligned_cols=70 Identities=21% Similarity=0.116 Sum_probs=54.6
Q ss_pred cccccceE-EeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcccccccc
Q 001041 1059 QVFRDLNL-KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEP 1128 (1178)
Q Consensus 1059 ~vL~~isf-~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp 1128 (1178)
+.|+++.. .+++|+.++|+||+|||||||++.|++...+.+|.+.+.+.+...-.+......+++.+|+.
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEY 80 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGG
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHH
Confidence 57999998 89999999999999999999999999988888899988776553222222223567777654
No 311
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.96 E-value=3.2e-07 Score=96.28 Aligned_cols=51 Identities=27% Similarity=0.395 Sum_probs=44.0
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcE--EECCeec
Q 001041 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV--LIDGINL 450 (1178)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i--~i~g~~~ 450 (1178)
....+..++..++|++++|+|++||||||++++|.+.+. ..|.+ .+||.++
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNV 64 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHH
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchh
Confidence 346677888889999999999999999999999999987 67988 8887544
No 312
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.94 E-value=2.7e-06 Score=89.47 Aligned_cols=35 Identities=29% Similarity=0.221 Sum_probs=29.5
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCC
Q 001041 407 ISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441 (1178)
Q Consensus 407 l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G 441 (1178)
+++++|++++|+||+||||||+++.|.+.+.|..|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46889999999999999999999999999866544
No 313
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.92 E-value=3.1e-06 Score=94.99 Aligned_cols=68 Identities=21% Similarity=0.244 Sum_probs=54.9
Q ss_pred ccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCH----HHH-----hcceEEE-cCCC
Q 001041 402 FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL----QWI-----RKKIGLV-SQEP 469 (1178)
Q Consensus 402 l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~----~~~-----r~~i~~v-~Q~~ 469 (1178)
+++++|++++|++++|+|++|+||||++..|.+.+.+.+|+|.+.+.|+..... ..+ +..+.++ +|.+
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~ 172 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKL 172 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSST
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCC
Confidence 467888888999999999999999999999999999999999998888754431 233 5568888 5653
No 314
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.90 E-value=5.1e-06 Score=84.86 Aligned_cols=56 Identities=25% Similarity=0.231 Sum_probs=44.3
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHH-hcccccccccc
Q 001041 1069 RAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ-QMGLVSQEPVL 1130 (1178)
Q Consensus 1069 ~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~-~IsiV~Qdp~L 1130 (1178)
.+|+.++|+|++||||||+++.|.+.+ |.+.+||.++.. ...+++ .+++++|++..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~~~~ 62 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHP--RRNIEKMASGEPLNDDDR 62 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCC--HHHHHHHHTTCCCCHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccc--hHHHHHhhcCcCCCcccc
Confidence 468999999999999999999999876 899999988763 233433 57777776443
No 315
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.88 E-value=9.9e-07 Score=106.04 Aligned_cols=70 Identities=29% Similarity=0.349 Sum_probs=52.5
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCC-cEE-ECCeecCC-------CCHH---HHhcceEEEcCCCCCCccc
Q 001041 408 SISSGTTAALVGQSGSGKSTVISLIERFYDPQAG-EVL-IDGINLKE-------FQLQ---WIRKKIGLVSQEPVLFTGS 475 (1178)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G-~i~-i~g~~~~~-------~~~~---~~r~~i~~v~Q~~~l~~~t 475 (1178)
.+++|++++|+|+||||||||+++|.|.+.|.+| +|. +||.++.. ++.. ..++++++++|+. +
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l-----~ 439 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEI-----T 439 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHH-----H
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHH-----H
Confidence 5789999999999999999999999999999886 785 89876532 2221 2345678888862 4
Q ss_pred HHHHHhc
Q 001041 476 IKDNIAY 482 (1178)
Q Consensus 476 i~~ni~~ 482 (1178)
..+|+.+
T Consensus 440 ~~~~ivi 446 (552)
T 3cr8_A 440 KNRGIAI 446 (552)
T ss_dssp HTTCEEE
T ss_pred hcCCEEE
Confidence 4555544
No 316
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.86 E-value=4e-06 Score=86.28 Aligned_cols=66 Identities=20% Similarity=0.179 Sum_probs=47.2
Q ss_pred cceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCe--ecCCCCHH----HHhcceEEEcCCC
Q 001041 403 SGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGI--NLKEFQLQ----WIRKKIGLVSQEP 469 (1178)
Q Consensus 403 ~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~--~~~~~~~~----~~r~~i~~v~Q~~ 469 (1178)
+++++.+.+| +++|+||||||||||+.+|.+.+.+..|...-.+. ++-..... ..+..|.++.|+|
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~ 89 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNE 89 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCC
Confidence 6889999999 99999999999999999999988887765432221 11000000 1245788999986
No 317
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.86 E-value=1.5e-05 Score=90.38 Aligned_cols=59 Identities=20% Similarity=0.209 Sum_probs=42.7
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcE-EECCeecCCCCHHHHhcceEEEcCCC
Q 001041 408 SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV-LIDGINLKEFQLQWIRKKIGLVSQEP 469 (1178)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i-~i~g~~~~~~~~~~~r~~i~~v~Q~~ 469 (1178)
-+++|+++.|.||+|||||||+..+++.+.+..|.+ ++++.+.. +. ...+++++.+|+.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~--~~-~ra~rlgv~~~~l 116 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL--DP-VYAKNLGVDLKSL 116 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--CH-HHHHHHTCCGGGC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc--ch-HHHHHcCCchhhh
Confidence 378999999999999999999999999887777765 55553322 11 1334566655543
No 318
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.80 E-value=8.6e-06 Score=80.70 Aligned_cols=47 Identities=26% Similarity=0.332 Sum_probs=42.0
Q ss_pred ccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCC--eEEECCcccCCC
Q 001041 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG--HITLDGVEIQKL 1112 (1178)
Q Consensus 1060 vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G--~I~IDG~dI~~i 1112 (1178)
+|+++ +|+.++|+||+|||||||++++.+.+.+ +| .+++++.++..-
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~ 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH
Confidence 67777 9999999999999999999999999987 58 899999887654
No 319
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.78 E-value=5.1e-07 Score=100.89 Aligned_cols=124 Identities=11% Similarity=0.202 Sum_probs=71.7
Q ss_pred ccccceeEEEeCCC------EEEEEcCCCCcHHHHHHHHhccCCC--CCCcEEECCeecCCCCHHHHhcceEEEcCCCCC
Q 001041 400 QIFSGFSISISSGT------TAALVGQSGSGKSTVISLIERFYDP--QAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVL 471 (1178)
Q Consensus 400 ~~l~~i~l~i~~g~------~~~ivG~~GsGKStl~~~l~g~~~~--~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l 471 (1178)
..|++++..+.+++ ++||+||||||||||+++|.+++.+ .+| .++++++|.+.
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~-------------------~v~~i~~D~f~ 134 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHP-------------------NVEVITTDGFL 134 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCC-------------------CEEEEEGGGGB
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCC-------------------eEEEEeecccc
Confidence 46777777777666 8999999999999999999999874 444 35666666655
Q ss_pred CcccHHHHH----hcCCCC-CCHHHHHHHHHHhcHHHHHHhCCCCc-cchhcCCCCCCChHHHHHHHHHHHhccCCCEEE
Q 001041 472 FTGSIKDNI----AYGKDD-ATTEEIRVATELANAAKFIDKLPQGI-DTLVGEHGTQLSGGQKQRIAIARAILKDPRILL 545 (1178)
Q Consensus 472 ~~~ti~~ni----~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~g~-~t~~~~~g~~lSgGqkqri~lARal~~~~~ill 545 (1178)
.....++.. .+|.|. .+.+... +.+..+..|. ...+- .+|-+..+|+.-+......|+|+|
T Consensus 135 ~~~~~l~~~~~~~~~g~P~~~D~~~l~---------~~L~~L~~g~~~v~~P----~yd~~~~~r~~~~~~~v~~~dIVI 201 (321)
T 3tqc_A 135 YSNAKLEKQGLMKRKGFPESYDMPSLL---------RVLNAIKSGQRNVRIP----VYSHHYYDIVRGQYEIVDQPDIVI 201 (321)
T ss_dssp CCHHHHHHTTCGGGTTSGGGBCHHHHH---------HHHHHHHTTCSSEEEE----EEETTTTEEEEEEEEEECSCSEEE
T ss_pred cchhhhhhHHHHhhccCcccccHHHHH---------HHHHhhhccccccccc----hhhhhccccccCceeeccCCCEEE
Confidence 544333321 123332 2223222 2233333343 11110 122222333332334557899999
Q ss_pred EeCCCCCCCH
Q 001041 546 LDEATSALDA 555 (1178)
Q Consensus 546 lDe~ts~lD~ 555 (1178)
++-+..-.|.
T Consensus 202 vEGi~lL~~~ 211 (321)
T 3tqc_A 202 LEGLNILQTG 211 (321)
T ss_dssp EECTTTTCCC
T ss_pred EEcccccccc
Confidence 9999875544
No 320
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.75 E-value=5.1e-06 Score=92.41 Aligned_cols=63 Identities=24% Similarity=0.216 Sum_probs=55.5
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCC
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL 1112 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i 1112 (1178)
+.++++++.|... + ++++|+ +|+.++++|++|+||||++..|++++.+..|+|.+.|.|+..-
T Consensus 77 ~~~~~l~~~~~~~---~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~ 139 (295)
T 1ls1_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRP 139 (295)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCH
T ss_pred HHHHHHHHHHCCC---C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccH
Confidence 6778899999522 1 789998 9999999999999999999999999999999999999998653
No 321
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.74 E-value=9.9e-06 Score=84.83 Aligned_cols=47 Identities=17% Similarity=0.178 Sum_probs=40.8
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC
Q 001041 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ 1113 (1178)
Q Consensus 1067 ~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~ 1113 (1178)
..++|+.+||+|++||||||+++.|.+++.+.+|.|.+.|.|....+
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~ 64 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVE 64 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCC
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCC
Confidence 46789999999999999999999999999988999988777764433
No 322
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.72 E-value=2.7e-05 Score=98.11 Aligned_cols=64 Identities=14% Similarity=0.158 Sum_probs=49.5
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEEeCCCC-CCCHHhHHHHHHHHHHHhcC-CeEEE-EecCcchhh
Q 001041 522 QLSGGQKQRIAIARAILKDPRILLLDEATS-ALDAESEKVVQEALDRIMVN-RTTVI-VAHRLSTVR 585 (1178)
Q Consensus 522 ~lSgGqkqri~lARal~~~~~illlDe~ts-~lD~~~~~~i~~~i~~~~~~-~t~i~-itH~~~~~~ 585 (1178)
-+|+|+.+|..++++++.+++++|+|||.. ++|.+....+.+.+.....+ +++++ .||+.+.+.
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~ 256 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQ 256 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHH
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHH
Confidence 468999999999999999999999999997 89987655555555555444 45555 478876654
No 323
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.70 E-value=7.7e-05 Score=85.52 Aligned_cols=59 Identities=17% Similarity=0.181 Sum_probs=45.6
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEEe-CCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecC
Q 001041 521 TQLSGGQKQRIAIARAILKDPRILLLD-EATSALDAESEKVVQEALDRIMVNRTTVIVAHR 580 (1178)
Q Consensus 521 ~~lSgGqkqri~lARal~~~~~illlD-e~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~ 580 (1178)
..+|+|++|++. +.+...++-++++| ++.+++|.+....+.+.+.....++.+|+|.+.
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK 289 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINK 289 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 458999999886 55555677789999 999999998877777777665557888888843
No 324
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.68 E-value=1.1e-05 Score=90.06 Aligned_cols=57 Identities=16% Similarity=0.229 Sum_probs=44.5
Q ss_pred ccccccceEEeeCCC------EEEEEcCCCCCHHHHHHHHhcccC--CCCCeEEECCcccCCCCh
Q 001041 1058 VQVFRDLNLKIRAGK------TVALVGESGSGKSTVVSLLQRFYD--PDAGHITLDGVEIQKLQL 1114 (1178)
Q Consensus 1058 ~~vL~~isf~I~~Ge------~vaIVG~SGSGKSTL~~lL~R~y~--p~~G~I~IDG~dI~~i~l 1114 (1178)
...|++++..+.+++ .+||+|+|||||||+++.|.++++ |++|.+.+-+.|--.++.
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~ 137 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSN 137 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCH
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccch
Confidence 357899999998887 899999999999999999999998 467775544444333333
No 325
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.65 E-value=8.5e-06 Score=91.32 Aligned_cols=55 Identities=15% Similarity=0.208 Sum_probs=49.6
Q ss_pred cccEEEEeEEEECCCCCCCcccc--------------ceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC
Q 001041 381 RGDIELRDVYFSYPARPNEQIFS--------------GFSISISSGTTAALVGQSGSGKSTVISLIERFYD 437 (1178)
Q Consensus 381 ~~~i~~~~~~~~y~~~~~~~~l~--------------~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~ 437 (1178)
.+.+.|+|++|.||.+ +..|+ |+.+.+.+|++++|+|++|||||||++.|.+...
T Consensus 131 ~~ri~Fe~ltp~yP~e--r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 131 RNKILFENLTPLHANS--RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp TTSCCTTTSCEESCCS--BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred cCCceeccccccCCCC--ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 5679999999999853 56888 8999999999999999999999999999999763
No 326
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.65 E-value=5.8e-06 Score=87.13 Aligned_cols=29 Identities=31% Similarity=0.350 Sum_probs=27.5
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccCCC
Q 001041 410 SSGTTAALVGQSGSGKSTVISLIERFYDP 438 (1178)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~~~ 438 (1178)
++|++++|+||||||||||++.|.+.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999876
No 327
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.64 E-value=6.5e-05 Score=84.44 Aligned_cols=107 Identities=11% Similarity=0.212 Sum_probs=68.1
Q ss_pred cccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHH
Q 001041 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNI 480 (1178)
Q Consensus 401 ~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni 480 (1178)
-|+.+.--+++|+++.|.|++|+|||||+.-++.......+ .+.|++=+
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~-------------------~Vl~fSlE------------ 83 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDR-------------------GVAVFSLE------------ 83 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC-------------------EEEEEESS------------
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCC-------------------eEEEEeCC------------
Confidence 45555556899999999999999999999888765433222 34443311
Q ss_pred hcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCC
Q 001041 481 AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD 554 (1178)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD 554 (1178)
.+.+++..-+-.. ...++ ++.... ..||++++||++.|...+.++++++.|+|...+|
T Consensus 84 ------ms~~ql~~Rlls~-----~~~v~--~~~l~~---g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~ 141 (338)
T 4a1f_A 84 ------MSAEQLALRALSD-----LTSIN--MHDLES---GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE 141 (338)
T ss_dssp ------SCHHHHHHHHHHH-----HHCCC--HHHHHH---TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred ------CCHHHHHHHHHHH-----hhCCC--HHHHhc---CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence 2333332211110 01111 111111 2699999999999999999999999999865543
No 328
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.63 E-value=2.9e-05 Score=81.57 Aligned_cols=69 Identities=17% Similarity=0.175 Sum_probs=40.8
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcch---hhccCEEEEEe
Q 001041 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLST---VRNADMIAVIH 594 (1178)
Q Consensus 523 lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~---~~~~d~i~~l~ 594 (1178)
.+.|+.+|..+++.++.+|+.+-.+ .+.++|...+.+.+.+... .+.++|+-+|.+.. ...||.+++++
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 3688999999999998887643332 2334555555555444432 35577777887654 35689999886
No 329
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.59 E-value=4e-05 Score=86.57 Aligned_cols=29 Identities=24% Similarity=0.358 Sum_probs=26.2
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhccC
Q 001041 408 SISSGTTAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
-+++|+++.|.||+|||||||+..++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 58899999999999999999998888754
No 330
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.59 E-value=2e-05 Score=83.49 Aligned_cols=57 Identities=18% Similarity=0.081 Sum_probs=44.4
Q ss_pred cccccceE-EeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHH
Q 001041 1059 QVFRDLNL-KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ 1119 (1178)
Q Consensus 1059 ~vL~~isf-~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~ 1119 (1178)
+.|+++.. -+++|+.++|+|++||||||+++.|++ .+..+.+++++.+ ..+.+.+++
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~~~~~ 64 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPERLVQ 64 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHHHHHH
Confidence 46777776 799999999999999999999999999 5555677887765 234455544
No 331
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.57 E-value=1.2e-05 Score=82.43 Aligned_cols=42 Identities=43% Similarity=0.532 Sum_probs=36.2
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhcccCCCCC--eEEECCcccCC
Q 001041 1069 RAGKTVALVGESGSGKSTVVSLLQRFYDPDAG--HITLDGVEIQK 1111 (1178)
Q Consensus 1069 ~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G--~I~IDG~dI~~ 1111 (1178)
++|+.++|+|++||||||++++|.+.+.+ .| .|.+||.+++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~~~ 46 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNIRQ 46 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHHHH
Confidence 47999999999999999999999998876 67 78889877754
No 332
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.54 E-value=2.3e-05 Score=87.21 Aligned_cols=64 Identities=20% Similarity=0.328 Sum_probs=50.0
Q ss_pred ceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCCh----HHH--HHhccccccc
Q 001041 1064 LNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL----KWL--RQQMGLVSQE 1127 (1178)
Q Consensus 1064 isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l----~~L--R~~IsiV~Qd 1127 (1178)
++++.++|+.++|||++||||||++..|++++.+++|+|.+.+.|+..... ..+ +..+.+++|.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~ 166 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHS 166 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCS
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecC
Confidence 455678899999999999999999999999999999999999988754321 122 2346666663
No 333
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.53 E-value=2.7e-05 Score=90.36 Aligned_cols=34 Identities=32% Similarity=0.441 Sum_probs=32.8
Q ss_pred cccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcc
Q 001041 1061 FRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRF 1094 (1178)
Q Consensus 1061 L~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~ 1094 (1178)
-++|+|++++|+.|||||++|||||||++.|.+.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 4799999999999999999999999999999998
No 334
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.52 E-value=1.4e-05 Score=82.95 Aligned_cols=38 Identities=37% Similarity=0.521 Sum_probs=33.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCC-----------CCCeEEECCcccC
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFYDP-----------DAGHITLDGVEIQ 1110 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y~p-----------~~G~I~IDG~dI~ 1110 (1178)
+++|||++|||||||++.|.+...+ .+|+|.+||.++.
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~ 79 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIK 79 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEE
Confidence 7999999999999999999998765 5799999997653
No 335
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.50 E-value=9.6e-06 Score=86.22 Aligned_cols=70 Identities=21% Similarity=0.286 Sum_probs=52.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhc---ccCCCCCeE--------EECCcccCCCC-hHHHHHhccccc------ccccccc
Q 001041 1071 GKTVALVGESGSGKSTVVSLLQR---FYDPDAGHI--------TLDGVEIQKLQ-LKWLRQQMGLVS------QEPVLFN 1132 (1178)
Q Consensus 1071 Ge~vaIVG~SGSGKSTL~~lL~R---~y~p~~G~I--------~IDG~dI~~i~-l~~LR~~IsiV~------Qdp~LF~ 1132 (1178)
.-.++|+|++||||||+++.|.+ +.-.+.|.+ .-.|+|+.+.. +..+.+++.+++ |+.+|+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~g 88 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLAG 88 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEECC
Confidence 34899999999999999999984 444566666 34577776653 667777777776 6677888
Q ss_pred ccHHHHHh
Q 001041 1133 DTIRANIA 1140 (1178)
Q Consensus 1133 gTIreNI~ 1140 (1178)
..|.+||+
T Consensus 89 ~~v~~~ir 96 (233)
T 3r20_A 89 EDVSSEIR 96 (233)
T ss_dssp EECTTGGG
T ss_pred eehhhhhc
Confidence 78877774
No 336
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.49 E-value=3.7e-05 Score=88.11 Aligned_cols=58 Identities=21% Similarity=0.273 Sum_probs=36.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHhc-ccCCCCCeEEECCcccCCCChHHHHHhccccccccccc
Q 001041 1072 KTVALVGESGSGKSTVVSLLQR-FYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLF 1131 (1178)
Q Consensus 1072 e~vaIVG~SGSGKSTL~~lL~R-~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF 1131 (1178)
..+.|+||+|+||||++++|.+ ++.|+.|.|.++|.++..... -+..+++++|++++.
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 95 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RKLELNVVSSPYHLE 95 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--ccceeeeecccceEE
Confidence 3499999999999999999999 899999999999998765433 278899999998763
No 337
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.49 E-value=5.5e-05 Score=89.76 Aligned_cols=91 Identities=18% Similarity=0.175 Sum_probs=72.5
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
.+++++...|. ++.+++++++++++| +.|+||+|+|||||+++|.+... .|.|.++|.++.+......++++.
T Consensus 41 ~~l~~lv~~l~---~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~ 113 (499)
T 2dhr_A 41 EELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR 113 (499)
T ss_dssp HHHHHHHHHHH---CGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHH
T ss_pred HHHHHHHHHhh---chhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHH
Confidence 34556655563 224899999999999 99999999999999999999875 789999999998877777788888
Q ss_pred ccccccc-cc-cccHHHHHh
Q 001041 1123 LVSQEPV-LF-NDTIRANIA 1140 (1178)
Q Consensus 1123 iV~Qdp~-LF-~gTIreNI~ 1140 (1178)
.++|++. .+ .-.+.|||.
T Consensus 114 ~lfq~a~~~~p~il~IDEId 133 (499)
T 2dhr_A 114 DLFETAKRHAPCIVFIDEID 133 (499)
T ss_dssp HHTTTSSSSSSCEEEEECGG
T ss_pred HHHHHHHhcCCCEEEEehHH
Confidence 9999874 23 235567773
No 338
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.47 E-value=2.9e-05 Score=97.42 Aligned_cols=86 Identities=17% Similarity=0.228 Sum_probs=53.8
Q ss_pred ccEEEeeeEEeCCCC----CCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCC-CCCeEEECCcccCCCChH
Q 001041 1041 GEIELHHVSFKYPSR----PDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP-DAGHITLDGVEIQKLQLK 1115 (1178)
Q Consensus 1041 g~I~f~nVsf~Y~~~----~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p-~~G~I~IDG~dI~~i~l~ 1115 (1178)
+.|++++ .++|-- .+..|++|+||+ ++|+.++|+||+||||||+++++.++.-+ +.| ..+..
T Consensus 576 ~~i~i~~--~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G------~~vpa---- 642 (800)
T 1wb9_A 576 PGIRITE--GRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIG------SYVPA---- 642 (800)
T ss_dssp SCEEEEE--ECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT------CCBSS----
T ss_pred CCEEEEe--ccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcC------cccch----
Confidence 3577775 455520 134699999999 99999999999999999999999997532 333 12211
Q ss_pred HHHHhcccccccccccc-ccHHHHHhcCC
Q 001041 1116 WLRQQMGLVSQEPVLFN-DTIRANIAYGK 1143 (1178)
Q Consensus 1116 ~LR~~IsiV~Qdp~LF~-gTIreNI~~g~ 1143 (1178)
-+..+++++| +|. -++.||+..+.
T Consensus 643 -~~~~i~~~~~---i~~~~~~~d~l~~~~ 667 (800)
T 1wb9_A 643 -QKVEIGPIDR---IFTRVGAADDLASGR 667 (800)
T ss_dssp -SEEEECCCCE---EEEEEC---------
T ss_pred -hcccceeHHH---HHhhCCHHHHHHhhh
Confidence 1356788877 454 47889987663
No 339
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.47 E-value=0.00014 Score=84.34 Aligned_cols=39 Identities=28% Similarity=0.347 Sum_probs=33.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCee
Q 001041 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGIN 449 (1178)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~ 449 (1178)
++.+++++|++||||||++..|.+.+.+..++|.+-+.|
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 578999999999999999999999998887777664444
No 340
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.46 E-value=2.3e-05 Score=82.25 Aligned_cols=65 Identities=17% Similarity=0.202 Sum_probs=45.9
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhcccCC-CCCeE----------EECCcccCCCChHHHHHhcccccccccccccc
Q 001041 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDP-DAGHI----------TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDT 1134 (1178)
Q Consensus 1067 ~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p-~~G~I----------~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gT 1134 (1178)
...+|..++|+|+|||||||+++.|.+.++. ..+.| .+||.|..-++.+.+++.+ .|+.+++.+.
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~---~~~~~~~~~~ 83 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKL---KEGQFLEFDK 83 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHH---HTTCEEEEEE
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHH---HcCCCEEeHH
Confidence 4578999999999999999999999987742 11222 3578888778887777543 3455554443
No 341
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.45 E-value=3.3e-05 Score=80.82 Aligned_cols=46 Identities=17% Similarity=0.137 Sum_probs=38.8
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCC
Q 001041 408 SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF 453 (1178)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~ 453 (1178)
..++|++++|+|++||||||+++.|.+.+++.+|.|.+.+.|....
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~ 63 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIV 63 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCC
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccC
Confidence 3568999999999999999999999999988889888766554433
No 342
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.41 E-value=0.00042 Score=80.25 Aligned_cols=149 Identities=21% Similarity=0.226 Sum_probs=84.0
Q ss_pred cceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHH-HhcceEEEcCCCCCCcccHHHHHh
Q 001041 403 SGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW-IRKKIGLVSQEPVLFTGSIKDNIA 481 (1178)
Q Consensus 403 ~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~-~r~~i~~v~Q~~~l~~~ti~~ni~ 481 (1178)
++++|+ +|++++++|++||||||++..|.+.+.+..|+|.+.+.|+......+ ++.. .-+.|+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~-------------~~~~gv~ 155 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLL-------------GEKVGVP 155 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHH-------------HHHHTCC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHh-------------cccCCcc
Confidence 567777 89999999999999999999999999999999998877765433222 2110 0011221
Q ss_pred cC--CCCCCHHHHHHHHHHhcHHHHHHhC-CCCccchhcCCCCCC---ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 001041 482 YG--KDDATTEEIRVATELANAAKFIDKL-PQGIDTLVGEHGTQL---SGGQKQRIAIARAILKDPRILLLDEATSALDA 555 (1178)
Q Consensus 482 ~~--~~~~~~~~~~~~~~~~~~~~~i~~~-~~g~~t~~~~~g~~l---SgGqkqri~lARal~~~~~illlDe~ts~lD~ 555 (1178)
+. .+..+..++. .+.++.+ ..++|..+=+-+..+ ..-..+...+++++..++-+|++| ++++.|.
T Consensus 156 v~~~~~~~~p~~i~--------~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvD-a~tgq~a 226 (425)
T 2ffh_A 156 VLEVMDGESPESIR--------RRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD-AMTGQEA 226 (425)
T ss_dssp EEECCTTCCHHHHH--------HHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE-GGGTTHH
T ss_pred EEecCCCCCHHHHH--------HHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEe-ccchHHH
Confidence 10 1112233331 1122222 145665443322223 234667778888886565677777 5555444
Q ss_pred HhHHHHHHHHHHHhcCCeEEEEec
Q 001041 556 ESEKVVQEALDRIMVNRTTVIVAH 579 (1178)
Q Consensus 556 ~~~~~i~~~i~~~~~~~t~i~itH 579 (1178)
.. .+ +.+... -+.+-+++|+
T Consensus 227 v~--~a-~~f~~~-l~i~GVIlTK 246 (425)
T 2ffh_A 227 LS--VA-RAFDEK-VGVTGLVLTK 246 (425)
T ss_dssp HH--HH-HHHHHH-TCCCEEEEES
T ss_pred HH--HH-HHHHhc-CCceEEEEeC
Confidence 32 11 222222 2346677775
No 343
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.37 E-value=4.3e-05 Score=79.69 Aligned_cols=58 Identities=22% Similarity=0.457 Sum_probs=41.2
Q ss_pred EEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhc----cc----CCCCCeEEECCccc
Q 001041 1049 SFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQR----FY----DPDAGHITLDGVEI 1109 (1178)
Q Consensus 1049 sf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R----~y----~p~~G~I~IDG~dI 1109 (1178)
+|+|++ -.++|+++||+.+++ +|++||++|+|||||++.|.+ -| .++.+.+.++|.++
T Consensus 6 ~~~~~~--~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l 71 (198)
T 1f6b_A 6 DWIYSG--FSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF 71 (198)
T ss_dssp ---------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEE
T ss_pred HHHHHH--HHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEE
Confidence 467764 235899999998887 699999999999999999986 22 33567888888654
No 344
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.37 E-value=0.00074 Score=78.15 Aligned_cols=45 Identities=18% Similarity=0.093 Sum_probs=32.0
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh----cCCeEEEEecCcchh
Q 001041 539 KDPRILLLDEATSALDAESEKVVQEALDRIM----VNRTTVIVAHRLSTV 584 (1178)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~----~~~t~i~itH~~~~~ 584 (1178)
.+|.+++|||+... |......+.+.+.... .+.++|+++|+.+..
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 45789999999876 7776666666664433 256788889987543
No 345
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.36 E-value=4.9e-05 Score=79.22 Aligned_cols=37 Identities=38% Similarity=0.578 Sum_probs=31.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc-----CC------CCCeEEECCccc
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFY-----DP------DAGHITLDGVEI 1109 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y-----~p------~~G~I~IDG~dI 1109 (1178)
+++|||++|||||||++.|.+.. .| ..|.|.+||.++
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 54 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 54 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE
Confidence 69999999999999999999873 23 367899999765
No 346
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.36 E-value=8.1e-05 Score=85.41 Aligned_cols=41 Identities=20% Similarity=0.353 Sum_probs=37.9
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhc------------ccCCCCCeEEECCc
Q 001041 1067 KIRAGKTVALVGESGSGKSTVVSLLQR------------FYDPDAGHITLDGV 1107 (1178)
Q Consensus 1067 ~I~~Ge~vaIVG~SGSGKSTL~~lL~R------------~y~p~~G~I~IDG~ 1107 (1178)
++++|.++||||++|+|||||+++|.+ ..+|+.|.|.++|.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~ 68 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDE 68 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCc
Confidence 567899999999999999999999999 77899999999884
No 347
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.34 E-value=7e-05 Score=80.13 Aligned_cols=40 Identities=20% Similarity=0.306 Sum_probs=35.4
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeec
Q 001041 407 ISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINL 450 (1178)
Q Consensus 407 l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~ 450 (1178)
.+.++|++++|+|++||||||++++|.|. .|+|.+.+.+.
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~ 54 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPV 54 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCH
Confidence 34578999999999999999999999997 78999988764
No 348
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.32 E-value=0.00012 Score=93.07 Aligned_cols=61 Identities=16% Similarity=0.110 Sum_probs=47.5
Q ss_pred ccEEEeeeEEeCCCC--CCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHH--------hcccCCCCCe
Q 001041 1041 GEIELHHVSFKYPSR--PDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLL--------QRFYDPDAGH 1101 (1178)
Q Consensus 1041 g~I~f~nVsf~Y~~~--~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL--------~R~y~p~~G~ 1101 (1178)
+.|++++...-+-.. .+..|++|++|++++|+.++|+||+||||||+++.+ .|.+-|.++.
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~ 700 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESA 700 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEE
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccc
Confidence 458888754333111 134699999999999999999999999999999999 7877776543
No 349
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.28 E-value=2.8e-05 Score=81.32 Aligned_cols=69 Identities=20% Similarity=0.391 Sum_probs=41.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc------ccCCCCCeEEECCc--ccCCCCh--------HHHHHhccccccccccccccHH
Q 001041 1073 TVALVGESGSGKSTVVSLLQR------FYDPDAGHITLDGV--EIQKLQL--------KWLRQQMGLVSQEPVLFNDTIR 1136 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R------~y~p~~G~I~IDG~--dI~~i~l--------~~LR~~IsiV~Qdp~LF~gTIr 1136 (1178)
.++|+|++||||||++++|.+ +.+|..|...++.. |-...+. ..+++....+.|+.+++++++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~vi~d~~~~ 81 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKDLKKTVFKMQIYMLTARSKQLKQAKNLENIIFDRTLL 81 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHHHTTCHHHHHHHHHHHHHHHHHHHHC------CEEEESCTT
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEcccccccHHHHHHHhCccccchhHHHHHHHHHHHHHHHhhccCCEEEEeccc
Confidence 689999999999999999998 45555554433321 1111111 1123334567788899999998
Q ss_pred HHHhc
Q 001041 1137 ANIAY 1141 (1178)
Q Consensus 1137 eNI~~ 1141 (1178)
+|+.|
T Consensus 82 ~~~~~ 86 (205)
T 2jaq_A 82 EDPIF 86 (205)
T ss_dssp THHHH
T ss_pred hhHHH
Confidence 88765
No 350
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.28 E-value=5.3e-05 Score=87.00 Aligned_cols=44 Identities=27% Similarity=0.387 Sum_probs=35.0
Q ss_pred cccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhc--ccCCCCCeEEEC
Q 001041 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQR--FYDPDAGHITLD 1105 (1178)
Q Consensus 1059 ~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R--~y~p~~G~I~ID 1105 (1178)
.+|++++++++ .|++||++|||||||++.|.+ |.++.+|.+.-.
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~ 70 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRR 70 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCS
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCc
Confidence 48999999999 999999999999999999999 777777766533
No 351
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.27 E-value=4.7e-05 Score=86.61 Aligned_cols=53 Identities=15% Similarity=0.206 Sum_probs=46.9
Q ss_pred cccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCC
Q 001041 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK 1111 (1178)
Q Consensus 1059 ~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~ 1111 (1178)
.+++++++++++|.+++|+|++|+||||+++.|.+.+.+.+|++.+-+.|...
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~ 96 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS 96 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCc
Confidence 48999999999999999999999999999999999998888888877666543
No 352
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.27 E-value=4.6e-05 Score=78.10 Aligned_cols=37 Identities=24% Similarity=0.383 Sum_probs=33.7
Q ss_pred eEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCe
Q 001041 1065 NLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101 (1178)
Q Consensus 1065 sf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~ 1101 (1178)
+|++++|+.++|+||+|+|||||++++.+.+.|.+|.
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~ 68 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI 68 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC
Confidence 5778899999999999999999999999999877773
No 353
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.26 E-value=9.3e-05 Score=82.11 Aligned_cols=45 Identities=20% Similarity=0.315 Sum_probs=38.9
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhcccCCCCC-eEEECCcccCCCC
Q 001041 1069 RAGKTVALVGESGSGKSTVVSLLQRFYDPDAG-HITLDGVEIQKLQ 1113 (1178)
Q Consensus 1069 ~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G-~I~IDG~dI~~i~ 1113 (1178)
++|+.+++||++||||||++..|.+.+.+++| +|.+-+.|.....
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~ 148 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIA 148 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccch
Confidence 57999999999999999999999999998788 7887777765433
No 354
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.24 E-value=0.00011 Score=86.84 Aligned_cols=61 Identities=23% Similarity=0.302 Sum_probs=40.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhccc------------CCCCCeEEECCcccCCCChHHHHHhcccccccccccc
Q 001041 1072 KTVALVGESGSGKSTVVSLLQRFY------------DPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFN 1132 (1178)
Q Consensus 1072 e~vaIVG~SGSGKSTL~~lL~R~y------------~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~ 1132 (1178)
-++||||++|+|||||++.|.+.. ++.+|.+.+||.++.-++..-+|+..++.+|+...|.
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~ 253 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYS 253 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSC
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHH
Confidence 479999999999999999999874 3778999999998766666666776677777666553
No 355
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.23 E-value=0.0001 Score=75.05 Aligned_cols=38 Identities=34% Similarity=0.403 Sum_probs=32.9
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecC
Q 001041 410 SSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK 451 (1178)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~ 451 (1178)
.+|++++|+|++||||||+++.|.+.+ |.+.+|+.++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcccc
Confidence 468999999999999999999999875 88888875543
No 356
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.23 E-value=6.7e-05 Score=90.83 Aligned_cols=82 Identities=18% Similarity=0.238 Sum_probs=52.5
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
+-.++|..+|. +..+++++++++ +|+.+.|+||+|+|||||+++|.+...+..|.|.++|..-..--....|+.++
T Consensus 84 ~G~~~vk~~i~---~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig 159 (543)
T 3m6a_A 84 HGLEKVKERIL---EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVG 159 (543)
T ss_dssp SSCHHHHHHHH---HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC----------------
T ss_pred ccHHHHHHHHH---HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhc
Confidence 33566766663 235789999999 89999999999999999999999999999999999885432222233445666
Q ss_pred cccccc
Q 001041 1123 LVSQEP 1128 (1178)
Q Consensus 1123 iV~Qdp 1128 (1178)
.++|..
T Consensus 160 ~~~~~~ 165 (543)
T 3m6a_A 160 AMPGRI 165 (543)
T ss_dssp ----CH
T ss_pred cCchHH
Confidence 666543
No 357
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.22 E-value=4.9e-05 Score=79.40 Aligned_cols=74 Identities=27% Similarity=0.336 Sum_probs=46.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccC-CCC-h--HHHHHhccccccccccccccHHHHHhcCCCCCC
Q 001041 1072 KTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ-KLQ-L--KWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDA 1147 (1178)
Q Consensus 1072 e~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~-~i~-l--~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~a 1147 (1178)
..|+|+|++||||||+.++|.+. |...||.-++. +.. - ..+++.+ |+.+. +|++ +|..++.. ..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d~~~~~~~~~~~~~i~~~~----~~~~~-~g~i-~~~~l~~~-~~ 76 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-----GYPVLDLDALAARARENKEEELKRLF----PEAVV-GGRL-DRRALARL-VF 76 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHHHHHHHHHHHTHHHHHHHC----GGGEE-TTEE-CHHHHHHH-HT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-----CCEEEcccHHHHHhcCChHHHHHHHH----HHHHh-CCCc-CHHHHHHH-Hh
Confidence 47999999999999999999996 77888765542 111 0 2333332 56555 7777 55544321 23
Q ss_pred CHHHHHHHHH
Q 001041 1148 TEAEIQAASE 1157 (1178)
Q Consensus 1148 sdeei~~Al~ 1157 (1178)
++++.++.++
T Consensus 77 ~~~~~~~~l~ 86 (203)
T 1uf9_A 77 SDPERLKALE 86 (203)
T ss_dssp TSHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 4555555554
No 358
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.22 E-value=5.8e-05 Score=79.56 Aligned_cols=45 Identities=38% Similarity=0.421 Sum_probs=40.4
Q ss_pred EEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCC--eEEECCcccC
Q 001041 1066 LKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG--HITLDGVEIQ 1110 (1178)
Q Consensus 1066 f~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G--~I~IDG~dI~ 1110 (1178)
+.+++|..+.|+|++||||||+++.|.+.+.|..| .+.+||.+++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r 66 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 66 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHh
Confidence 55788999999999999999999999999988889 8999986664
No 359
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.19 E-value=8.2e-05 Score=91.54 Aligned_cols=65 Identities=15% Similarity=0.199 Sum_probs=55.6
Q ss_pred cccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCC-CeEEECCcccCCCChHHHHHhcccccccc
Q 001041 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA-GHITLDGVEIQKLQLKWLRQQMGLVSQEP 1128 (1178)
Q Consensus 1059 ~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~-G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp 1128 (1178)
.+++++++.+++|+.+.|+||+|+|||||+++|.++..+.. |.+.+++.+..... ..++++||..
T Consensus 48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~-----p~i~~~p~g~ 113 (604)
T 3k1j_A 48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENM-----PRIKTVPACQ 113 (604)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTS-----CEEEEEETTH
T ss_pred hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccC-----CcEEEEecch
Confidence 58999999999999999999999999999999999999887 88999988776543 3466666543
No 360
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.16 E-value=0.00021 Score=76.23 Aligned_cols=44 Identities=20% Similarity=0.276 Sum_probs=32.8
Q ss_pred cccceEEee---CCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEEC
Q 001041 1061 FRDLNLKIR---AGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLD 1105 (1178)
Q Consensus 1061 L~~isf~I~---~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~ID 1105 (1178)
|.++|++.+ +|..++|.|++||||||+++.|...+.+ .+.+...
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 666666665 8999999999999999999999999988 6777644
No 361
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.14 E-value=0.00013 Score=83.21 Aligned_cols=44 Identities=20% Similarity=0.327 Sum_probs=37.5
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCC
Q 001041 1069 RAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL 1112 (1178)
Q Consensus 1069 ~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i 1112 (1178)
+++.+|+|+|++|||||||++.|.+.+.+.+|+|.|.+.|....
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~ 115 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSC 115 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC---
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCC
Confidence 46789999999999999999999999999999999888876543
No 362
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.13 E-value=0.0001 Score=84.03 Aligned_cols=44 Identities=16% Similarity=0.268 Sum_probs=38.2
Q ss_pred CccccceeEEEeCCCE--EEEEcCCCCcHHHHHHHHhccCCCCCCc
Q 001041 399 EQIFSGFSISISSGTT--AALVGQSGSGKSTVISLIERFYDPQAGE 442 (1178)
Q Consensus 399 ~~~l~~i~l~i~~g~~--~~ivG~~GsGKStl~~~l~g~~~~~~G~ 442 (1178)
..+++.++..++.|+. +.++||+|+||||+++++.+.+.+..+.
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~ 76 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYS 76 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCcc
Confidence 3588889999999998 9999999999999999999987665543
No 363
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.12 E-value=0.00011 Score=88.63 Aligned_cols=71 Identities=27% Similarity=0.412 Sum_probs=54.9
Q ss_pred ccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcc----------------------c-C---------------CCCCe
Q 001041 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRF----------------------Y-D---------------PDAGH 1101 (1178)
Q Consensus 1060 vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~----------------------y-~---------------p~~G~ 1101 (1178)
.+++++|++.+| ..+|||++|||||||+.+|.-+ + + ..++.
T Consensus 50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~llg~r~~~~~i~~g~~~a~v~~~f~~~~~~~~~~i~r~~~~~g~~~ 128 (517)
T 4ad8_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (517)
T ss_dssp TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHHTCSCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCCE
T ss_pred ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHHhcCCcHHHHhcCCCCcEEEEEEEEecCCCCeEEEEEEEecCCCcE
Confidence 478899999999 9999999999999999999444 4 2 23678
Q ss_pred EEECCcccCCCChHHHHHh-ccccccccccc
Q 001041 1102 ITLDGVEIQKLQLKWLRQQ-MGLVSQEPVLF 1131 (1178)
Q Consensus 1102 I~IDG~dI~~i~l~~LR~~-IsiV~Qdp~LF 1131 (1178)
++|||.+++.-.+.++-.. +.+++|+-.++
T Consensus 129 ~~ing~~v~~~~l~~~~~~li~i~~q~~~~~ 159 (517)
T 4ad8_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVS 159 (517)
T ss_dssp EESSSSBCCHHHHHHHHTTTEEEESGGGGGT
T ss_pred EEECCEECCHHHHHHHhhhheEEeCCchHHh
Confidence 9999998865445555444 57889986554
No 364
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.07 E-value=0.00024 Score=73.31 Aligned_cols=49 Identities=20% Similarity=0.484 Sum_probs=30.2
Q ss_pred ccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhc----ccC----CCCCeEEECCccc
Q 001041 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQR----FYD----PDAGHITLDGVEI 1109 (1178)
Q Consensus 1060 vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R----~y~----p~~G~I~IDG~dI 1109 (1178)
+|++++++.++. +|++||++|+|||||++.+.+ -|. ++.+.+.++|..+
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~ 69 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKF 69 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEE
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEE
Confidence 789999998887 899999999999999999987 233 3456788888544
No 365
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.05 E-value=0.00023 Score=72.10 Aligned_cols=35 Identities=29% Similarity=0.351 Sum_probs=29.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcc
Q 001041 1070 AGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVE 1108 (1178)
Q Consensus 1070 ~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~d 1108 (1178)
.|+.++|+|++||||||++++|.+.+.+ +.+|+-+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~d~ 37 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDSDQ 37 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEeccH
Confidence 4788999999999999999999998754 6777543
No 366
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.04 E-value=0.00016 Score=91.60 Aligned_cols=51 Identities=18% Similarity=0.262 Sum_probs=41.2
Q ss_pred ccEEEeeeEEeCC------CCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhc
Q 001041 1041 GEIELHHVSFKYP------SRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQR 1093 (1178)
Q Consensus 1041 g~I~f~nVsf~Y~------~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R 1093 (1178)
+.|++++ .++| ...+..|++||||++++|+.++|+||+||||||+++.+..
T Consensus 639 ~~i~i~~--~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 639 RKIVIKN--GRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CEEEEEE--ECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CcEEEEe--ccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHH
Confidence 3577776 4454 1123579999999999999999999999999999999864
No 367
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.02 E-value=0.00038 Score=79.07 Aligned_cols=28 Identities=18% Similarity=0.171 Sum_probs=25.8
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 001041 408 SISSGTTAALVGQSGSGKSTVISLIERF 435 (1178)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~ 435 (1178)
-+++|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999988875
No 368
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.00 E-value=0.00031 Score=71.21 Aligned_cols=41 Identities=27% Similarity=0.453 Sum_probs=31.5
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhcccCC------------CCCeEEECCccc
Q 001041 1069 RAGKTVALVGESGSGKSTVVSLLQRFYDP------------DAGHITLDGVEI 1109 (1178)
Q Consensus 1069 ~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p------------~~G~I~IDG~dI 1109 (1178)
++|.+|+|||++|+|||||++.|.+...+ ..+.+.+||.++
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 54 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPL 54 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEE
Confidence 47899999999999999999999985421 236788888644
No 369
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.99 E-value=0.0039 Score=66.75 Aligned_cols=28 Identities=32% Similarity=0.332 Sum_probs=23.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCC
Q 001041 414 TAALVGQSGSGKSTVISLIERFYDPQAG 441 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~~~~G 441 (1178)
+++|+|++|+|||||++.|+|.-.+.+|
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 6899999999999999999997665544
No 370
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.99 E-value=0.00045 Score=77.51 Aligned_cols=108 Identities=9% Similarity=0.112 Sum_probs=64.7
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHH
Q 001041 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDN 479 (1178)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~n 479 (1178)
+.|+++.--+++|+++.|.|++|+|||||+.-++...-. .| ..+.|++=+
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g------------------~~vl~~slE----------- 105 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND------------------DVVNLHSLE----------- 105 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT------------------CEEEEEESS-----------
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC------------------CeEEEEECC-----------
Confidence 356666656899999999999999999999877753211 11 134444322
Q ss_pred HhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCC
Q 001041 480 IAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 552 (1178)
Q Consensus 480 i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~ 552 (1178)
.+.+++..-+... ...++ .+... .+-..||++++||+.-|...+.++++++.|+|...
T Consensus 106 -------~s~~~l~~R~~~~-----~~~i~--~~~l~-~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~ 163 (315)
T 3bh0_A 106 -------MGKKENIKRLIVT-----AGSIN--AQKIK-AARRDFASEDWGKLSMAIGEISNSNINIFDKAGQS 163 (315)
T ss_dssp -------SCHHHHHHHHHHH-----HTTCC--HHHHH-SCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB
T ss_pred -------CCHHHHHHHHHHH-----HcCCC--HHHHh-cCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 2223222111110 00010 01111 00012889999999999988888999999988643
No 371
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.96 E-value=0.0003 Score=81.52 Aligned_cols=65 Identities=23% Similarity=0.202 Sum_probs=54.5
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCCh
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL 1114 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l 1114 (1178)
+..++++..|... . ++++|+ +|+.++++|++||||||++..|.+.+.+..|+|.+.+.|+.....
T Consensus 77 ~v~~~L~~~~~~~---~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa 141 (425)
T 2ffh_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAA 141 (425)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHH
T ss_pred HHHHHHHHHhCCC---c--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchh
Confidence 5566777888532 1 678888 899999999999999999999999999999999999988866443
No 372
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.95 E-value=0.0025 Score=70.82 Aligned_cols=32 Identities=31% Similarity=0.405 Sum_probs=26.3
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 001041 524 SGGQKQRIAIARAILKDPRILLLDEATSALDA 555 (1178)
Q Consensus 524 SgGqkqri~lARal~~~~~illlDe~ts~lD~ 555 (1178)
+++++.|..+++|...+|.++++||+.+-.+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~ 128 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSE 128 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBC
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccc
Confidence 35777788888888889999999999887664
No 373
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.92 E-value=0.00016 Score=78.06 Aligned_cols=68 Identities=19% Similarity=0.136 Sum_probs=45.5
Q ss_pred ccccc-eEEeeCCCEEEEEcCCCCCHHHHHH-HHhcccCCCCCeEEECCcccCCCChHHHHHhcccccccc
Q 001041 1060 VFRDL-NLKIRAGKTVALVGESGSGKSTVVS-LLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEP 1128 (1178)
Q Consensus 1060 vL~~i-sf~I~~Ge~vaIVG~SGSGKSTL~~-lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp 1128 (1178)
.|+.+ .--+++|+.++|+|++||||||++. ++....+...+.+++++.+- .-.+....+++++.+|+.
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~-~~~~~~~~~~~g~~~~~~ 80 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH-PVQVRQNMAQFGWDVKPY 80 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC-HHHHHHHHHTTTCCCHHH
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC-HHHHHHHHHHcCCCHHHH
Confidence 46666 5679999999999999999999955 44555555555666665432 112222334578888764
No 374
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.92 E-value=0.00044 Score=81.37 Aligned_cols=50 Identities=20% Similarity=0.373 Sum_probs=39.2
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCC
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G 1100 (1178)
.|+++|+ .+|.+ . . ++++.+|+.++|+||+|||||||+.+|.++..|.++
T Consensus 6 ~l~~~~~-~~~~~---~---~--~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~~ 55 (430)
T 1w1w_A 6 GLELSNF-KSYRG---V---T--KVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSN 55 (430)
T ss_dssp EEEEESC-SSCCS---E---E--EEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC---
T ss_pred EEEEeCE-EEECC---c---e--eEEecCCCEEEEECCCCCCHHHHHHHHHhhhccccc
Confidence 4889998 68842 1 1 355788999999999999999999999999888653
No 375
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.92 E-value=0.00033 Score=79.30 Aligned_cols=62 Identities=16% Similarity=0.187 Sum_probs=50.3
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeE-EECCcccCCCChHHHHHhccccccccccc
Q 001041 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI-TLDGVEIQKLQLKWLRQQMGLVSQEPVLF 1131 (1178)
Q Consensus 1067 ~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I-~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF 1131 (1178)
=+++|+.+.|.||+|||||||+..+++...+..|.+ +||+.+..+ ....+++++.+|+..+.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~---~~ra~rlgv~~~~l~i~ 119 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD---PVYAKNLGVDLKSLLIS 119 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC---HHHHHHHTCCGGGCEEE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc---hHHHHHcCCchhhhhhh
Confidence 389999999999999999999999999988877864 788765432 23567899998887654
No 376
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.91 E-value=0.00015 Score=87.71 Aligned_cols=47 Identities=19% Similarity=0.334 Sum_probs=41.7
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECC
Q 001041 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447 (1178)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g 447 (1178)
.+++++++++ +|+.++++||+|||||||+++|.+.+.+..|.|.++|
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 4677888888 8999999999999999999999999988888887766
No 377
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.90 E-value=0.00051 Score=78.03 Aligned_cols=33 Identities=21% Similarity=0.369 Sum_probs=31.3
Q ss_pred ccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhc
Q 001041 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQR 1093 (1178)
Q Consensus 1060 vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R 1093 (1178)
.+++++|++++| .++||||+|||||||+.+|..
T Consensus 16 ~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 16 NLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp TCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 578999999999 999999999999999999985
No 378
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.90 E-value=0.0002 Score=90.72 Aligned_cols=32 Identities=19% Similarity=0.312 Sum_probs=29.0
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC
Q 001041 407 ISISSGTTAALVGQSGSGKSTVISLIERFYDP 438 (1178)
Q Consensus 407 l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~ 438 (1178)
+.+++|+.+.|+||+|||||||+++|.+++..
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 46889999999999999999999999998743
No 379
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.88 E-value=0.00015 Score=82.45 Aligned_cols=48 Identities=17% Similarity=0.212 Sum_probs=42.0
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECC
Q 001041 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447 (1178)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g 447 (1178)
.+++++++.+++|.+++|+|++|+|||||++.|++.+.+.+|+|.+-+
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~ 91 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIA 91 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 478889999999999999999999999999999999888777665533
No 380
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.85 E-value=0.0012 Score=77.57 Aligned_cols=44 Identities=16% Similarity=0.294 Sum_probs=32.9
Q ss_pred cc-CCCEEEEeCCCCCCCH-HhHHHHHHHHHHHh-cCCeEEEEecCc
Q 001041 538 LK-DPRILLLDEATSALDA-ESEKVVQEALDRIM-VNRTTVIVAHRL 581 (1178)
Q Consensus 538 ~~-~~~illlDe~ts~lD~-~~~~~i~~~i~~~~-~~~t~i~itH~~ 581 (1178)
++ ++++|++||+..-.+. .+...+...+.... .++.+|+.||+.
T Consensus 191 ~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 191 YRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp HTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred hcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 34 8999999999887764 46666777776654 457888888874
No 381
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.84 E-value=0.00044 Score=70.76 Aligned_cols=74 Identities=26% Similarity=0.447 Sum_probs=54.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcccC-------------CCCCeEEECCcccCCCChHHHHHhccccccccccccccHHHHHh
Q 001041 1074 VALVGESGSGKSTVVSLLQRFYD-------------PDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIA 1140 (1178)
Q Consensus 1074 vaIVG~SGSGKSTL~~lL~R~y~-------------p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~ 1140 (1178)
+.|+||||||||||++.|+.-++ |-.|+ +||+|..=++.+...+.+. ++-+|-.+.+..|.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE--~~G~dY~Fvs~~eF~~~i~---~g~flE~~~~~g~~- 77 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE--VNGKDYNFVSVDEFKSMIK---NNEFIEWAQFSGNY- 77 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHHH---TTCEEEEEEETTEE-
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCC--cCCceeEeecHHHHHHHHH---cCCEEEEEEEcCce-
Confidence 68999999999999999875432 33454 6999999999999887664 77787777766654
Q ss_pred cCCCCCCCHHHHHHHHH
Q 001041 1141 YGKGGDATEAEIQAASE 1157 (1178)
Q Consensus 1141 ~g~~~~asdeei~~Al~ 1157 (1178)
|| .+-++|.++++
T Consensus 78 YG----t~~~~v~~~l~ 90 (186)
T 1ex7_A 78 YG----STVASVKQVSK 90 (186)
T ss_dssp EE----EEHHHHHHHHH
T ss_pred ee----eecceeeehhh
Confidence 65 23455555543
No 382
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.80 E-value=0.00025 Score=72.49 Aligned_cols=38 Identities=37% Similarity=0.455 Sum_probs=31.2
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccCCCCCC--cEEECCe
Q 001041 410 SSGTTAALVGQSGSGKSTVISLIERFYDPQAG--EVLIDGI 448 (1178)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G--~i~i~g~ 448 (1178)
++|++++|+|++||||||+++.|.+.+.+ .| .|.+||.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~ 42 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGD 42 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECCh
Confidence 47999999999999999999999998766 56 5556653
No 383
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.80 E-value=0.0046 Score=66.98 Aligned_cols=42 Identities=26% Similarity=0.370 Sum_probs=27.8
Q ss_pred ccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECC
Q 001041 402 FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447 (1178)
Q Consensus 402 l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g 447 (1178)
++++++.+++| +.|+||+|+|||||+++|.+.+... -+.+++
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~ 78 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISG 78 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECS
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeH
Confidence 44445555555 9999999999999999999976421 345554
No 384
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.78 E-value=0.00052 Score=76.50 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcc
Q 001041 411 SGTTAALVGQSGSGKSTVISLIERF 435 (1178)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~ 435 (1178)
++.+++|+|++|+|||||++.|+|.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3448999999999999999999985
No 385
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.78 E-value=0.00031 Score=77.82 Aligned_cols=64 Identities=22% Similarity=0.278 Sum_probs=52.4
Q ss_pred EEEeeeEEeCCCCCCcccccc-ceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCC
Q 001041 1043 IELHHVSFKYPSRPDVQVFRD-LNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL 1112 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~-isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i 1112 (1178)
+..+++...|... -++ ++|+.+ |+.++++|++|+||||++..|.+.+.+..|++.+.+.|+..-
T Consensus 75 ~~~~~l~~~~~~~-----~~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~ 139 (297)
T 1j8m_F 75 IVYDELSNLFGGD-----KEPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRP 139 (297)
T ss_dssp HHHHHHHHHTTCS-----CCCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSS
T ss_pred HHHHHHHHHhccc-----cccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCH
Confidence 4456666677422 156 888877 999999999999999999999999998889999988887654
No 386
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.77 E-value=0.00036 Score=79.48 Aligned_cols=40 Identities=20% Similarity=0.343 Sum_probs=34.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeec
Q 001041 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINL 450 (1178)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~ 450 (1178)
++.+++|+|++|||||||++.|.|.+.+.+|+|.+.+.|.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp 112 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDP 112 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecC
Confidence 5779999999999999999999999888888777655443
No 387
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.77 E-value=0.00052 Score=80.90 Aligned_cols=56 Identities=29% Similarity=0.346 Sum_probs=35.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCC------------CCCCcEEECCeecCCCCHHHHhcceEEEcCCC
Q 001041 414 TAALVGQSGSGKSTVISLIERFYD------------PQAGEVLIDGINLKEFQLQWIRKKIGLVSQEP 469 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~------------~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~ 469 (1178)
+++|+|++|+|||||++.|+|... +.+|.+.++|.++.-++....++..++.+|..
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~ 249 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTV 249 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhH
Confidence 799999999999999999999753 56788999997654444333343444444443
No 388
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.76 E-value=0.00048 Score=73.45 Aligned_cols=43 Identities=21% Similarity=0.264 Sum_probs=31.3
Q ss_pred ccceeEEEe---CCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEE
Q 001041 402 FSGFSISIS---SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 445 (1178)
Q Consensus 402 l~~i~l~i~---~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i 445 (1178)
|.+.|+.+. +|.+++|.|++||||||+++.|...+.+ .+.+..
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~ 58 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 58 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence 555566555 8999999999999999999999999887 666543
No 389
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.75 E-value=0.00061 Score=68.98 Aligned_cols=33 Identities=27% Similarity=0.342 Sum_probs=27.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECC
Q 001041 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447 (1178)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g 447 (1178)
.|+.++|+|++||||||+++.|.+.+.+ +.+|+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4789999999999999999999998743 55553
No 390
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.74 E-value=0.00044 Score=78.98 Aligned_cols=50 Identities=24% Similarity=0.475 Sum_probs=37.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccC-----------CCCCeEEECCcccCCCChHHHHHhcccccccc
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFYD-----------PDAGHITLDGVEIQKLQLKWLRQQMGLVSQEP 1128 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y~-----------p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp 1128 (1178)
+|+|||++|||||||++.|.+... |..|.|.++|.++. +....|++.|.|
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp 241 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIP 241 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCC
Confidence 399999999999999999998765 67799999997652 223355555543
No 391
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.72 E-value=0.00015 Score=82.52 Aligned_cols=69 Identities=16% Similarity=0.202 Sum_probs=55.5
Q ss_pred cccccceEEeeCCCE--EEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCC-CChHHHHHhccccccc
Q 001041 1059 QVFRDLNLKIRAGKT--VALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK-LQLKWLRQQMGLVSQE 1127 (1178)
Q Consensus 1059 ~vL~~isf~I~~Ge~--vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~-i~l~~LR~~IsiV~Qd 1127 (1178)
.+++.++..|+.|+. +.++||+|+||||+++++.+...+..+.+.+.+.+..+ .+.+.+|+.+..++|.
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~~~~~ 103 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFAST 103 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHHHB
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHHHHhh
Confidence 489999999999998 99999999999999999999988777766555555543 3567788777665554
No 392
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.71 E-value=0.00048 Score=79.54 Aligned_cols=31 Identities=16% Similarity=0.315 Sum_probs=26.9
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccCCCCC
Q 001041 410 SSGTTAALVGQSGSGKSTVISLIERFYDPQA 440 (1178)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~ 440 (1178)
.++..+.|+||+|+|||||++.+.+.+.+..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~ 73 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKF 73 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999876543
No 393
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.71 E-value=0.0003 Score=73.60 Aligned_cols=30 Identities=23% Similarity=0.345 Sum_probs=26.5
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhccCC
Q 001041 408 SISSGTTAALVGQSGSGKSTVISLIERFYD 437 (1178)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~~~ 437 (1178)
+..+|.+++|+||+||||||+.+.|...++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 356899999999999999999999998774
No 394
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.71 E-value=0.0013 Score=70.27 Aligned_cols=132 Identities=16% Similarity=0.176 Sum_probs=69.4
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCC-cccHHHHHhcCCCCC
Q 001041 409 ISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYGKDDA 487 (1178)
Q Consensus 409 i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~ni~~~~~~~ 487 (1178)
+..|+.++++|||||||||++..++.......|. ...+.++.|.|... .-++.+|+.......
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 4578999999999999999887665432111221 12466677777533 345666664221100
Q ss_pred CHHHHHHHHHHhcHHHHHHhCCCCccchh----cCCCCC---CChHHHHHHHHHHHhccCCCEEEEeCCCC-CCCHHhHH
Q 001041 488 TTEEIRVATELANAAKFIDKLPQGIDTLV----GEHGTQ---LSGGQKQRIAIARAILKDPRILLLDEATS-ALDAESEK 559 (1178)
Q Consensus 488 ~~~~~~~~~~~~~~~~~i~~~~~g~~t~~----~~~g~~---lSgGqkqri~lARal~~~~~illlDe~ts-~lD~~~~~ 559 (1178)
- ....|+.... ...... -+.|+-.+.. +.-+++-+++++||+-. ++|.....
T Consensus 137 ~------------------~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~ 196 (235)
T 3llm_A 137 P------------------GKSCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLL 196 (235)
T ss_dssp T------------------TSSEEEEETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHH
T ss_pred c------------------CceEEEeechhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHH
Confidence 0 0001111111 101111 2456655553 34688999999999976 46665543
Q ss_pred HHHHHHHHHhcCCeEEE
Q 001041 560 VVQEALDRIMVNRTTVI 576 (1178)
Q Consensus 560 ~i~~~i~~~~~~~t~i~ 576 (1178)
...+.+.....+..+++
T Consensus 197 ~~l~~i~~~~~~~~~il 213 (235)
T 3llm_A 197 VVLRDVVQAYPEVRIVL 213 (235)
T ss_dssp HHHHHHHHHCTTSEEEE
T ss_pred HHHHHHHhhCCCCeEEE
Confidence 33333433333433333
No 395
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.70 E-value=0.00021 Score=81.71 Aligned_cols=54 Identities=22% Similarity=0.239 Sum_probs=36.5
Q ss_pred ccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCe
Q 001041 1039 VKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101 (1178)
Q Consensus 1039 ~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~ 1101 (1178)
..|.|.|+|++..|.. ..++++++|+| +|||++|+|||||++.|++.-.+..|.
T Consensus 14 ~~~~v~~~~l~~~~~~---k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~ 67 (361)
T 2qag_A 14 TPGYVGFANLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV 67 (361)
T ss_dssp -------CCHHHHHHT---HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-----
T ss_pred CCceEEeccchHHhCC---eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCc
Confidence 3577999999998852 35899999977 999999999999999998765444443
No 396
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.68 E-value=0.00041 Score=72.12 Aligned_cols=42 Identities=14% Similarity=0.390 Sum_probs=31.4
Q ss_pred EEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhc
Q 001041 390 YFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 390 ~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g 434 (1178)
+++|++ ..++++++++..+++ +++++|++|+|||||++.+.+
T Consensus 6 ~~~~~~--~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 6 DWIYSG--FSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp ---------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHH--HHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 455654 246899999988877 689999999999999999986
No 397
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.66 E-value=0.00037 Score=71.62 Aligned_cols=45 Identities=31% Similarity=0.403 Sum_probs=37.0
Q ss_pred EEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeE-EECCcccC
Q 001041 1066 LKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI-TLDGVEIQ 1110 (1178)
Q Consensus 1066 f~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I-~IDG~dI~ 1110 (1178)
+..++|..+.|+|++||||||+++.|.+.+.+..|.+ .+||-+++
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~ 53 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWAR 53 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHH
Confidence 3456789999999999999999999999988777765 57765553
No 398
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.66 E-value=0.0022 Score=66.71 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=23.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccCCCC
Q 001041 413 TTAALVGQSGSGKSTVISLIERFYDPQ 439 (1178)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g~~~~~ 439 (1178)
.-+.|.||+|+|||||++++.......
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 689999999999999999999877544
No 399
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.65 E-value=0.00073 Score=77.41 Aligned_cols=32 Identities=19% Similarity=0.556 Sum_probs=29.0
Q ss_pred ccccceEEeeCCCEEEEEcCCCCCHHHHHHHHh
Q 001041 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQ 1092 (1178)
Q Consensus 1060 vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~ 1092 (1178)
.++++++++++| .++|+||||||||||+.+|.
T Consensus 13 ~~~~~~i~~~~g-~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 13 GLKNVDIEFQSG-ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp TEEEEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred CccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 367889999999 78899999999999999987
No 400
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.64 E-value=0.00087 Score=79.31 Aligned_cols=56 Identities=16% Similarity=0.250 Sum_probs=47.6
Q ss_pred cceEEeeCCCEEEEEcCCCCCHHHHHHHHhc--ccCCCCCeEEECCcccCCCChHHHH
Q 001041 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQR--FYDPDAGHITLDGVEIQKLQLKWLR 1118 (1178)
Q Consensus 1063 ~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R--~y~p~~G~I~IDG~dI~~i~l~~LR 1118 (1178)
.+++++.+|..+.|+|.|||||||+++.|.. ++.++.|.+.+.++|.+...+..+.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~ 216 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYE 216 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGT
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhc
Confidence 4778889999999999999999999999876 7777779999999998876665553
No 401
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.60 E-value=0.00086 Score=68.80 Aligned_cols=32 Identities=16% Similarity=0.386 Sum_probs=26.8
Q ss_pred cceEEeeCCCEEEEEcCCCCCHHHHHHHHhcc
Q 001041 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQRF 1094 (1178)
Q Consensus 1063 ~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~ 1094 (1178)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999999999999876
No 402
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.60 E-value=0.0008 Score=72.94 Aligned_cols=48 Identities=23% Similarity=0.403 Sum_probs=39.1
Q ss_pred cccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCC
Q 001041 1061 FRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK 1111 (1178)
Q Consensus 1061 L~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~ 1111 (1178)
+++.+ ..+++..+.|+|++||||||+++.|.+.+. .|.+.+||-+++.
T Consensus 23 ~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~r~ 70 (253)
T 2p5t_B 23 TRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSFRS 70 (253)
T ss_dssp HTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGGGT
T ss_pred HccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHHHH
Confidence 44444 567788999999999999999999999875 3678999987754
No 403
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.53 E-value=0.00041 Score=73.02 Aligned_cols=41 Identities=32% Similarity=0.323 Sum_probs=35.7
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCC--cEEECC
Q 001041 407 ISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG--EVLIDG 447 (1178)
Q Consensus 407 l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G--~i~i~g 447 (1178)
+.+++|.+++|+|++||||||+.+.|.+.+.|..| .+.++|
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 44678999999999999999999999999887778 777765
No 404
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.50 E-value=0.01 Score=67.36 Aligned_cols=29 Identities=21% Similarity=0.302 Sum_probs=25.9
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhccCC
Q 001041 409 ISSGTTAALVGQSGSGKSTVISLIERFYD 437 (1178)
Q Consensus 409 i~~g~~~~ivG~~GsGKStl~~~l~g~~~ 437 (1178)
+++|+++.|.|++|||||||+..++....
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 88999999999999999999988876543
No 405
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.50 E-value=0.0012 Score=72.57 Aligned_cols=30 Identities=33% Similarity=0.380 Sum_probs=27.6
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhcccC
Q 001041 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYD 1096 (1178)
Q Consensus 1067 ~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~ 1096 (1178)
-+++|+.++|+||+|||||||+..+++...
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 378999999999999999999999998765
No 406
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.50 E-value=0.00058 Score=86.48 Aligned_cols=63 Identities=14% Similarity=0.195 Sum_probs=54.6
Q ss_pred eEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccccccccc
Q 001041 1065 NLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPV 1129 (1178)
Q Consensus 1065 sf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~ 1129 (1178)
+|.+++|+.+.|+||+|+|||||+++|.+.+.+. -|.++|.++.........+++..++|++.
T Consensus 232 ~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~--~i~v~~~~l~~~~~g~~~~~l~~vf~~a~ 294 (806)
T 1ypw_A 232 AIGVKPPRGILLYGPPGTGKTLIARAVANETGAF--FFLINGPEIMSKLAGESESNLRKAFEEAE 294 (806)
T ss_dssp SSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCE--EEEEEHHHHSSSSTTHHHHHHHHHHHHHH
T ss_pred hcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCc--EEEEEchHhhhhhhhhHHHHHHHHHHHHH
Confidence 3468999999999999999999999999987653 58999999888777888888999998873
No 407
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.49 E-value=0.0011 Score=75.74 Aligned_cols=41 Identities=22% Similarity=0.418 Sum_probs=35.1
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhcc-----------cCCCCCeEEECCc
Q 001041 1067 KIRAGKTVALVGESGSGKSTVVSLLQRF-----------YDPDAGHITLDGV 1107 (1178)
Q Consensus 1067 ~I~~Ge~vaIVG~SGSGKSTL~~lL~R~-----------y~p~~G~I~IDG~ 1107 (1178)
.++.|.++||||++|+|||||++.|.+- .+|..|.+.++|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 5678899999999999999999999998 7888899988774
No 408
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.49 E-value=0.0015 Score=64.43 Aligned_cols=31 Identities=32% Similarity=0.535 Sum_probs=25.1
Q ss_pred cceeEEEeCCCEEEEEcCCCCcHHHHHHHHhc
Q 001041 403 SGFSISISSGTTAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 403 ~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g 434 (1178)
++..+++.+| +.+|+|||||||||++.+|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 4455566555 999999999999999999873
No 409
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.47 E-value=0.00088 Score=72.76 Aligned_cols=64 Identities=20% Similarity=0.295 Sum_probs=41.9
Q ss_pred ccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccccccc
Q 001041 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQE 1127 (1178)
Q Consensus 1060 vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qd 1127 (1178)
.++++++.+++| +.|+||+|+||||++++|.+..... -+.+++.++.+.-.....+++..++|+
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~ 99 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDFVEMFVGVGASRVRDMFEQ 99 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSSTTSCCCCCHHHHHHHHHH
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHHHHHHhhhhhHHHHHHHHHH
Confidence 456666666666 9999999999999999999987643 588999888665433333334444443
No 410
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.43 E-value=0.0011 Score=68.95 Aligned_cols=36 Identities=28% Similarity=0.433 Sum_probs=30.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccC
Q 001041 1071 GKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ 1110 (1178)
Q Consensus 1071 Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~ 1110 (1178)
...++|+|++||||||+++.|.+.+ |...||+-++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~~ 53 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDALH 53 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGGC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcCc
Confidence 4689999999999999999998877 66778776653
No 411
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.42 E-value=0.00089 Score=76.29 Aligned_cols=59 Identities=22% Similarity=0.245 Sum_probs=42.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHH
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEI 1152 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei 1152 (1178)
++||||++|+|||||+++|.+.. + ++.+++.. |+..|+.+. .++++++
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~-~----------~v~~~p~~------------------Ti~pn~g~~---~v~~~~l 50 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN-A----------LAANYPFA------------------TIDKNVGVV---PLEDERL 50 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH-T----------TCSSCCGG------------------GGSTTEEEE---ECCCHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-C----------cccCCCCc------------------eeccceeeE---ecChHHH
Confidence 58999999999999999999974 3 22222221 677777543 3567788
Q ss_pred HHHHHHcCchH
Q 001041 1153 QAASEMANAHK 1163 (1178)
Q Consensus 1153 ~~Al~~A~~~d 1163 (1178)
..+++.++.++
T Consensus 51 ~~~~~~~~~~~ 61 (368)
T 2dby_A 51 YALQRTFAKGE 61 (368)
T ss_dssp HHHHHHHCBTT
T ss_pred HHHHHHhcccc
Confidence 88888777654
No 412
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.41 E-value=0.0056 Score=67.37 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=24.9
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhccC
Q 001041 409 ISSGTTAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 409 i~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
++++.-+.|.||+|+|||||++++.+.+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4567789999999999999999999875
No 413
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.40 E-value=0.0014 Score=66.45 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=30.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcccCCC---CCeEEECCccc
Q 001041 1072 KTVALVGESGSGKSTVVSLLQRFYDPD---AGHITLDGVEI 1109 (1178)
Q Consensus 1072 e~vaIVG~SGSGKSTL~~lL~R~y~p~---~G~I~IDG~dI 1109 (1178)
..++|+|+|||||||+++.|.+.+.+. -|.|..++.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~~ 47 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDM 47 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC--
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCcc
Confidence 579999999999999999999876543 37788887553
No 414
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.40 E-value=0.0016 Score=67.03 Aligned_cols=33 Identities=15% Similarity=0.466 Sum_probs=20.9
Q ss_pred cccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhc
Q 001041 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 401 ~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g 434 (1178)
+++++++..++. +++++|++|+|||||++.+.+
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 788899987776 889999999999999999997
No 415
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.39 E-value=0.0042 Score=69.94 Aligned_cols=29 Identities=14% Similarity=0.181 Sum_probs=24.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCCC
Q 001041 411 SGTTAALVGQSGSGKSTVISLIERFYDPQ 439 (1178)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~~~ 439 (1178)
++..+.|.||+|+|||||++++.+.+...
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 35689999999999999999999877543
No 416
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.36 E-value=0.0017 Score=69.30 Aligned_cols=28 Identities=18% Similarity=0.114 Sum_probs=25.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCC
Q 001041 411 SGTTAALVGQSGSGKSTVISLIERFYDP 438 (1178)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~~ 438 (1178)
++..+.|+||+|+|||||++.+...+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999999987644
No 417
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.34 E-value=0.0018 Score=65.56 Aligned_cols=27 Identities=22% Similarity=0.432 Sum_probs=23.5
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccC
Q 001041 410 SSGTTAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
++|.+++|+|++|+|||||++.+.|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999864
No 418
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.32 E-value=0.006 Score=72.18 Aligned_cols=57 Identities=14% Similarity=0.198 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCC-CCCHHhHHHHHHHHHHHhcCCeEEEEecCcchh
Q 001041 525 GGQKQRIAIARAILKDPRILLLDEATS-ALDAESEKVVQEALDRIMVNRTTVIVAHRLSTV 584 (1178)
Q Consensus 525 gGqkqri~lARal~~~~~illlDe~ts-~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~ 584 (1178)
+.|++....++..+++++++|+.-... .+... ...+.+.+++ .++.+|+|.+..+..
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~-d~~l~~~l~~--~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAA-DEEVAKILYR--TKKPVVLAVNKLDNT 144 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHH-HHHHHHHHTT--CCSCEEEEEECC---
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChH-HHHHHHHHHH--cCCCEEEEEECccch
Confidence 358888888999999999777654433 34433 3445555543 478899999887754
No 419
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.30 E-value=0.0024 Score=63.92 Aligned_cols=23 Identities=35% Similarity=0.497 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcc
Q 001041 1072 KTVALVGESGSGKSTVVSLLQRF 1094 (1178)
Q Consensus 1072 e~vaIVG~SGSGKSTL~~lL~R~ 1094 (1178)
-+++|||++|+|||||++.|.+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999984
No 420
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.27 E-value=0.0022 Score=63.21 Aligned_cols=29 Identities=28% Similarity=0.598 Sum_probs=23.5
Q ss_pred cceEEeeCCCEEEEEcCCCCCHHHHHHHHh
Q 001041 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQ 1092 (1178)
Q Consensus 1063 ~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~ 1092 (1178)
+.+++..+| ..+|+||+|||||||+.+|.
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 344555555 88999999999999999986
No 421
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.24 E-value=0.0014 Score=68.44 Aligned_cols=31 Identities=35% Similarity=0.523 Sum_probs=26.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcc
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVE 1108 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~d 1108 (1178)
.+||+|++||||||+++.|.++ |...||+-+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d~ 34 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDADV 34 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccchHH
Confidence 5899999999999999999983 677777544
No 422
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.23 E-value=0.0062 Score=67.73 Aligned_cols=113 Identities=18% Similarity=0.229 Sum_probs=0.0
Q ss_pred eEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCC
Q 001041 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKD 485 (1178)
Q Consensus 406 ~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~ 485 (1178)
++.++++..+.|.||+|||||||++++.+... .+-+.+++.
T Consensus 43 ~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~~~------------------------------------- 83 (301)
T 3cf0_A 43 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGP------------------------------------- 83 (301)
T ss_dssp HHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEECHH-------------------------------------
T ss_pred HcCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEEhH-------------------------------------
Q ss_pred CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCC-------------CC
Q 001041 486 DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT-------------SA 552 (1178)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~t-------------s~ 552 (1178)
+=....+|+. .++-+-.+.+|--..|.++++||.- +.
T Consensus 84 ------------------------~l~~~~~g~~------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~ 133 (301)
T 3cf0_A 84 ------------------------ELLTMWFGES------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGG 133 (301)
T ss_dssp ------------------------HHHHHHHTTC------TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSC
T ss_pred ------------------------HHHhhhcCch------HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcch
Q ss_pred CCHHhHHHHHHHHH--HHhcCCeEEEEecCcchhhcc
Q 001041 553 LDAESEKVVQEALD--RIMVNRTTVIVAHRLSTVRNA 587 (1178)
Q Consensus 553 lD~~~~~~i~~~i~--~~~~~~t~i~itH~~~~~~~~ 587 (1178)
........+...+. ....+..+|..||+.+.+..+
T Consensus 134 ~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~a 170 (301)
T 3cf0_A 134 AADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPA 170 (301)
T ss_dssp SCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGG
T ss_pred HHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChH
No 423
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.20 E-value=0.0011 Score=75.75 Aligned_cols=43 Identities=12% Similarity=0.329 Sum_probs=31.7
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcch
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLST 583 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~ 583 (1178)
+++++++|| ...+++.....+.+.+.+...+..+|+++++...
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~ 175 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTR 175 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhh
Confidence 567999999 6778888777788888765545556777776653
No 424
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.17 E-value=0.011 Score=65.94 Aligned_cols=32 Identities=13% Similarity=0.172 Sum_probs=27.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccCCCCCCcE
Q 001041 412 GTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443 (1178)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i 443 (1178)
...+.++||+|+||||++++|.+.+.+.+|.+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 35789999999999999999999887766644
No 425
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.16 E-value=0.00038 Score=73.92 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccC
Q 001041 412 GTTAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
.-+++|+||+||||||+.+.|.+.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998543
No 426
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.14 E-value=0.0021 Score=65.74 Aligned_cols=37 Identities=27% Similarity=0.467 Sum_probs=29.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcc-----------cCCCCCeEEECCcc
Q 001041 1072 KTVALVGESGSGKSTVVSLLQRF-----------YDPDAGHITLDGVE 1108 (1178)
Q Consensus 1072 e~vaIVG~SGSGKSTL~~lL~R~-----------y~p~~G~I~IDG~d 1108 (1178)
-+|++||++|+|||||++.|.+- .++..|.+.++|..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 55 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEK 55 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcE
Confidence 37999999999999999999973 23445677777654
No 427
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.12 E-value=0.0024 Score=65.38 Aligned_cols=32 Identities=22% Similarity=0.368 Sum_probs=26.6
Q ss_pred ceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 001041 404 GFSISISSGTTAALVGQSGSGKSTVISLIERF 435 (1178)
Q Consensus 404 ~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~ 435 (1178)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 47888889999999999999999999999876
No 428
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.11 E-value=0.001 Score=73.60 Aligned_cols=45 Identities=24% Similarity=0.311 Sum_probs=38.4
Q ss_pred eeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeec
Q 001041 405 FSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINL 450 (1178)
Q Consensus 405 i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~ 450 (1178)
++++.+ |++++++|++|+||||++..|.+.+.+..|+|.+.+.|.
T Consensus 92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred cccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 677766 999999999999999999999999988888887755544
No 429
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.06 E-value=0.016 Score=56.61 Aligned_cols=32 Identities=22% Similarity=0.365 Sum_probs=25.9
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccCCCCCC
Q 001041 410 SSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441 (1178)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G 441 (1178)
+.+.-+.|.||+|+|||+++++|.......++
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~ 53 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQG 53 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCccCC
Confidence 34567899999999999999999987654433
No 430
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.96 E-value=0.0025 Score=65.35 Aligned_cols=36 Identities=28% Similarity=0.412 Sum_probs=31.2
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEE
Q 001041 409 ISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 444 (1178)
Q Consensus 409 i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~ 444 (1178)
.++|.++.|+|++||||||+++.|.+.+.+..|.+.
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~ 45 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVE 45 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 457899999999999999999999998877766653
No 431
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.93 E-value=0.0029 Score=69.76 Aligned_cols=46 Identities=24% Similarity=0.289 Sum_probs=35.9
Q ss_pred ccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhc----ccCCCCCeEEECC
Q 001041 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQR----FYDPDAGHITLDG 1106 (1178)
Q Consensus 1060 vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R----~y~p~~G~I~IDG 1106 (1178)
++++..+.+ .|.-++|+|+||+||||++..|.+ |..-+...|...|
T Consensus 134 ~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~~~ 183 (314)
T 1ko7_A 134 SLHGVLVDV-YGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIREIS 183 (314)
T ss_dssp EEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEESS
T ss_pred eeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEEcC
Confidence 677777777 789999999999999999999987 5544545555444
No 432
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.87 E-value=0.0033 Score=71.86 Aligned_cols=28 Identities=21% Similarity=0.372 Sum_probs=24.8
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 001041 408 SISSGTTAALVGQSGSGKSTVISLIERF 435 (1178)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~ 435 (1178)
.+..|.+++|||++|+|||||+++|.|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3567889999999999999999999986
No 433
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.81 E-value=0.0016 Score=72.99 Aligned_cols=37 Identities=38% Similarity=0.509 Sum_probs=34.0
Q ss_pred cccccceEEeeCCCE--EEEEcCCCCCHHHHHHHHhccc
Q 001041 1059 QVFRDLNLKIRAGKT--VALVGESGSGKSTVVSLLQRFY 1095 (1178)
Q Consensus 1059 ~vL~~isf~I~~Ge~--vaIVG~SGSGKSTL~~lL~R~y 1095 (1178)
.+|+++++.+++|+. ++|+|++||||||++++|.+.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 488999999999999 9999999999999999998754
No 434
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.78 E-value=0.018 Score=63.41 Aligned_cols=28 Identities=14% Similarity=0.269 Sum_probs=25.2
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 001041 408 SISSGTTAALVGQSGSGKSTVISLIERF 435 (1178)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~ 435 (1178)
-+++|..+.|.||+|||||||+..+...
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 5788999999999999999999988754
No 435
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.77 E-value=0.006 Score=62.33 Aligned_cols=37 Identities=35% Similarity=0.544 Sum_probs=29.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc-c----cCCCCC----eEEECCccc
Q 001041 1073 TVALVGESGSGKSTVVSLLQR-F----YDPDAG----HITLDGVEI 1109 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R-~----y~p~~G----~I~IDG~dI 1109 (1178)
+|+|||++|+|||||++.+.+ - +.|+.| .+.++|..+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 67 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSY 67 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEE
Confidence 799999999999999975543 3 667777 788888543
No 436
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.77 E-value=0.0042 Score=63.41 Aligned_cols=23 Identities=35% Similarity=0.618 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFY 1095 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y 1095 (1178)
+|+|||++|+|||||++.+.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999864
No 437
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.77 E-value=0.0035 Score=63.43 Aligned_cols=28 Identities=21% Similarity=0.211 Sum_probs=24.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccCCCC
Q 001041 412 GTTAALVGQSGSGKSTVISLIERFYDPQ 439 (1178)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~~~~ 439 (1178)
-..++|+|++|||||||++.|++.+.+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~ 33 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCAR 33 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence 3689999999999999999999986543
No 438
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.73 E-value=0.0048 Score=71.47 Aligned_cols=70 Identities=16% Similarity=0.210 Sum_probs=45.9
Q ss_pred eEEeCCCCCCccccccceEEe---eCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1048 VSFKYPSRPDVQVFRDLNLKI---RAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1048 Vsf~Y~~~~~~~vL~~isf~I---~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
+.+.+... +.||+-|. +.. ..+..++|+|+|||||||+++.|+..+.+..+.|.+- |.. -+...+.+.++
T Consensus 11 ~~~G~~~~-g~~v~~d~-~~~~~~~~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~--D~~-~~~~~~~~~~g 83 (392)
T 4ag6_A 11 IVLGKDRD-GGLVLVDI-WKRGGDRTNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII--DPE-REYKEMCRKLG 83 (392)
T ss_dssp EEEEECTT-SCEEEECT-TCCBTTBCCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE--ESS-CCSHHHHHHTT
T ss_pred cEEEEeCC-CCeEEEec-ccCcCccccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE--eCC-cCHHHHHHHcC
Confidence 34455322 34566665 332 2677899999999999999999998777777888773 321 23444554443
No 439
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.72 E-value=0.0049 Score=64.14 Aligned_cols=21 Identities=38% Similarity=0.710 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 001041 1073 TVALVGESGSGKSTVVSLLQR 1093 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R 1093 (1178)
+++|+|++||||||+++.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999998
No 440
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.71 E-value=0.014 Score=61.97 Aligned_cols=45 Identities=13% Similarity=0.160 Sum_probs=30.6
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchh
Q 001041 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTV 584 (1178)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~ 584 (1178)
.++.++++||+-. +|......+.+.+.+...+..+|++|++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 3578999999765 67776666666665433455677778776543
No 441
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.67 E-value=0.005 Score=62.95 Aligned_cols=27 Identities=33% Similarity=0.517 Sum_probs=23.4
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhccc
Q 001041 1069 RAGKTVALVGESGSGKSTVVSLLQRFY 1095 (1178)
Q Consensus 1069 ~~Ge~vaIVG~SGSGKSTL~~lL~R~y 1095 (1178)
.+|..++|+|++||||||+++.|.+-+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998644
No 442
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.64 E-value=0.0068 Score=68.16 Aligned_cols=67 Identities=22% Similarity=0.317 Sum_probs=46.0
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhccc-CC------CCCeEEECCcccCCCChHHH---HHhccccccccccccccHH
Q 001041 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFY-DP------DAGHITLDGVEIQKLQLKWL---RQQMGLVSQEPVLFNDTIR 1136 (1178)
Q Consensus 1067 ~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y-~p------~~G~I~IDG~dI~~i~l~~L---R~~IsiV~Qdp~LF~gTIr 1136 (1178)
-+++|+.+.|.|++||||||++..++.-. .+ ..+.++||..+- ++.+.+ .+++++-+++ +.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~--~~~~~l~~~~~~~g~~~~~-------~~ 173 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT--FRWERIENMAKALGLDIDN-------VM 173 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CCHHHHHHHHHHTTCCHHH-------HH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC--CCHHHHHHHHHHhCCCHHH-------Hh
Confidence 58999999999999999999998887643 34 345688887653 233433 3445554432 45
Q ss_pred HHHhcC
Q 001041 1137 ANIAYG 1142 (1178)
Q Consensus 1137 eNI~~g 1142 (1178)
+||.+.
T Consensus 174 ~~l~~~ 179 (324)
T 2z43_A 174 NNIYYI 179 (324)
T ss_dssp HTEEEE
T ss_pred ccEEEE
Confidence 677664
No 443
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.62 E-value=0.0078 Score=60.11 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 001041 414 TAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
+++|+|++|+|||||++.+.|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 444
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.61 E-value=0.0011 Score=75.62 Aligned_cols=55 Identities=22% Similarity=0.263 Sum_probs=35.6
Q ss_pred cccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEE
Q 001041 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 444 (1178)
Q Consensus 381 ~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~ 444 (1178)
.+.+.++|++..|.. +.++++++|+| +|+|++|+|||||++.|++.-....|.+.
T Consensus 15 ~~~v~~~~l~~~~~~---k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~ 69 (361)
T 2qag_A 15 PGYVGFANLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIP 69 (361)
T ss_dssp ------CCHHHHHHT---HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-------
T ss_pred CceEEeccchHHhCC---eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCccc
Confidence 456888888877742 35788999876 99999999999999999987555555443
No 445
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.59 E-value=0.0039 Score=64.78 Aligned_cols=32 Identities=38% Similarity=0.501 Sum_probs=26.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECC
Q 001041 412 GTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447 (1178)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g 447 (1178)
..+++|+|++||||||+.+.|.+.+ |...+++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeC
Confidence 5689999999999999999998876 5555654
No 446
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.58 E-value=0.004 Score=67.36 Aligned_cols=40 Identities=33% Similarity=0.464 Sum_probs=32.5
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCee
Q 001041 408 SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGIN 449 (1178)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~ 449 (1178)
..+++..+.|+|++||||||+.+.|.+.+. .|.+.+||-.
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~ 67 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDS 67 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHH
Confidence 455678999999999999999999998774 3567777743
No 447
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.58 E-value=0.008 Score=67.97 Aligned_cols=36 Identities=28% Similarity=0.526 Sum_probs=31.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhc-----------ccCCCCCeEEECC
Q 001041 1071 GKTVALVGESGSGKSTVVSLLQR-----------FYDPDAGHITLDG 1106 (1178)
Q Consensus 1071 Ge~vaIVG~SGSGKSTL~~lL~R-----------~y~p~~G~I~IDG 1106 (1178)
|-+++|||++|+|||||++.|.+ -.+|..|.+.++|
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 56899999999999999999998 4578888888876
No 448
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.56 E-value=0.0087 Score=64.01 Aligned_cols=28 Identities=29% Similarity=0.380 Sum_probs=23.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCCC
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFYDPDAG 1100 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y~p~~G 1100 (1178)
+|+|||++|+|||||++.|++-..+.+|
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 6899999999999999999986655443
No 449
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.54 E-value=0.00078 Score=70.16 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 001041 414 TAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
+++|+|++||||||+.+.|...+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999854
No 450
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.54 E-value=0.0072 Score=62.92 Aligned_cols=30 Identities=33% Similarity=0.575 Sum_probs=24.4
Q ss_pred cceeEEEeCCCEEEEEcCCCCcHHHHHHHHh
Q 001041 403 SGFSISISSGTTAALVGQSGSGKSTVISLIE 433 (1178)
Q Consensus 403 ~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~ 433 (1178)
++.++.+.+| +.+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 3455566554 99999999999999999886
No 451
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.53 E-value=0.018 Score=67.65 Aligned_cols=105 Identities=15% Similarity=0.150 Sum_probs=63.1
Q ss_pred cccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHH
Q 001041 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNI 480 (1178)
Q Consensus 401 ~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni 480 (1178)
.|+.+.--+++|+++.|.|++|+|||||+.-++.......|. .+.|++=+
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~------------------~vl~~slE------------ 238 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGV------------------GVGIYSLE------------ 238 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCC------------------CEEEEESS------------
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCC------------------eEEEEECC------------
Confidence 455555458999999999999999999998887654322221 23333321
Q ss_pred hcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC
Q 001041 481 AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 551 (1178)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts 551 (1178)
.+.+++..-... ... |.+..--.. ..|+..+.+|+.-|-..+.+.++++.|+|..
T Consensus 239 ------~~~~~l~~R~~~-----~~~----~i~~~~l~~-g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~ 293 (444)
T 2q6t_A 239 ------MPAAQLTLRMMC-----SEA----RIDMNRVRL-GQLTDRDFSRLVDVASRLSEAPIYIDDTPDL 293 (444)
T ss_dssp ------SCHHHHHHHHHH-----HHT----TCCTTTCCG-GGCCHHHHHHHHHHHHHHHTSCEEEECCTTC
T ss_pred ------CCHHHHHHHHHH-----HHc----CCCHHHHhC-CCCCHHHHHHHHHHHHHHhcCCEEEECCCCC
Confidence 223332221100 001 111110011 2589999999988877778888998887643
No 452
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.51 E-value=0.005 Score=61.69 Aligned_cols=36 Identities=22% Similarity=0.261 Sum_probs=27.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcccCCCC---CeEEECCc
Q 001041 1072 KTVALVGESGSGKSTVVSLLQRFYDPDA---GHITLDGV 1107 (1178)
Q Consensus 1072 e~vaIVG~SGSGKSTL~~lL~R~y~p~~---G~I~IDG~ 1107 (1178)
..++|+|++||||||++..|.+.+.... |.|..|..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 43 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence 3689999999999999999998765432 45665543
No 453
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.49 E-value=0.066 Score=61.99 Aligned_cols=29 Identities=31% Similarity=0.613 Sum_probs=25.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCCC
Q 001041 411 SGTTAALVGQSGSGKSTVISLIERFYDPQ 439 (1178)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~~~ 439 (1178)
++.+++++|++|+||||++..|...+...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 45689999999999999999999877543
No 454
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.44 E-value=0.0071 Score=61.27 Aligned_cols=26 Identities=35% Similarity=0.465 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhcccC
Q 001041 1071 GKTVALVGESGSGKSTVVSLLQRFYD 1096 (1178)
Q Consensus 1071 Ge~vaIVG~SGSGKSTL~~lL~R~y~ 1096 (1178)
|..+.|+|+|||||||+++.|..-+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999987553
No 455
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.40 E-value=0.0022 Score=67.31 Aligned_cols=26 Identities=31% Similarity=0.502 Sum_probs=23.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCC
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFYDPD 1098 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y~p~ 1098 (1178)
.|+|+|++||||||+++.|.+.+++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999988754
No 456
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.38 E-value=0.0067 Score=61.85 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001041 414 TAALVGQSGSGKSTVISLIERF 435 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~ 435 (1178)
+++++|++|+|||||++.+.+.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999984
No 457
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.38 E-value=0.0049 Score=68.52 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhcc
Q 001041 1070 AGKTVALVGESGSGKSTVVSLLQRF 1094 (1178)
Q Consensus 1070 ~Ge~vaIVG~SGSGKSTL~~lL~R~ 1094 (1178)
++.+|||||++|+|||||++.|.+.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3448999999999999999999985
No 458
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.37 E-value=0.06 Score=58.04 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccC
Q 001041 411 SGTTAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
+..-+.|.||+|+||||+++++.+.+
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34568999999999999999999865
No 459
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.36 E-value=0.011 Score=66.98 Aligned_cols=62 Identities=18% Similarity=0.268 Sum_probs=42.9
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCC-eEEECCcccCCCChHHHHHhccccccccccc
Q 001041 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG-HITLDGVEIQKLQLKWLRQQMGLVSQEPVLF 1131 (1178)
Q Consensus 1067 ~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G-~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF 1131 (1178)
-+++|+.+.|.|++|||||||+..++.-.....| .++||...- .+ ....+++++.+|+..++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~--~~-~~~a~~lG~~~~~l~i~ 119 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHA--LD-PEYAKKLGVDTDSLLVS 119 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC--CC-HHHHHHTTCCGGGCEEE
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC--cC-HHHHHHcCCCHHHeEEe
Confidence 4789999999999999999998877755443444 456666432 22 22456678777765544
No 460
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.35 E-value=0.0069 Score=61.61 Aligned_cols=38 Identities=24% Similarity=0.465 Sum_probs=30.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcc----cCCCCC----eEEECCccc
Q 001041 1072 KTVALVGESGSGKSTVVSLLQRF----YDPDAG----HITLDGVEI 1109 (1178)
Q Consensus 1072 e~vaIVG~SGSGKSTL~~lL~R~----y~p~~G----~I~IDG~dI 1109 (1178)
=+|+|||++|+|||||++.|.+- +.|+.| .+.+++..+
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l 62 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKL 62 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEE
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEEE
Confidence 47999999999999999999875 456677 666666543
No 461
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.35 E-value=0.007 Score=68.61 Aligned_cols=67 Identities=19% Similarity=0.241 Sum_probs=45.5
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhccc-CC------CCCeEEECCcccCCCChHHHH---HhccccccccccccccHH
Q 001041 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFY-DP------DAGHITLDGVEIQKLQLKWLR---QQMGLVSQEPVLFNDTIR 1136 (1178)
Q Consensus 1067 ~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y-~p------~~G~I~IDG~dI~~i~l~~LR---~~IsiV~Qdp~LF~gTIr 1136 (1178)
-+++|+.+.|+|++||||||++..++.-. .| ..+.++||.... ++.+.++ +++++-++ .+.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~--~~~~~l~~~~~~~g~~~~-------~~l 188 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT--FRPDRLRDIADRFNVDHD-------AVL 188 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC--CCHHHHHHHHHHTTCCHH-------HHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC--CCHHHHHHHHHHcCCCHH-------HHH
Confidence 58999999999999999999999888752 22 345678887663 3344443 34444322 345
Q ss_pred HHHhcC
Q 001041 1137 ANIAYG 1142 (1178)
Q Consensus 1137 eNI~~g 1142 (1178)
+|+.+.
T Consensus 189 ~~l~~~ 194 (343)
T 1v5w_A 189 DNVLYA 194 (343)
T ss_dssp HTEEEE
T ss_pred hceeEe
Confidence 677654
No 462
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.29 E-value=0.008 Score=61.33 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhccc
Q 001041 1070 AGKTVALVGESGSGKSTVVSLLQRFY 1095 (1178)
Q Consensus 1070 ~Ge~vaIVG~SGSGKSTL~~lL~R~y 1095 (1178)
++..+.|+|++||||||+.+.|.+-+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998754
No 463
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.26 E-value=0.0074 Score=60.63 Aligned_cols=24 Identities=29% Similarity=0.231 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccC
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFYD 1096 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y~ 1096 (1178)
.++|+|++||||||+++.|...+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999987653
No 464
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.19 E-value=0.015 Score=61.06 Aligned_cols=51 Identities=18% Similarity=0.211 Sum_probs=33.6
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCc-----------chhhccCEEEEEe
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRL-----------STVRNADMIAVIH 594 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~-----------~~~~~~d~i~~l~ 594 (1178)
+++++++||.-- ++.+.-..+ ..+.+ .+.++|++-|+. ..+..||+|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve~l-~~L~~--~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICEVA-NILAE--NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHHHH-HHHHH--TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHHHHH-HHHHh--CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 665432233 22333 378899999932 2345699988875
No 465
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.17 E-value=0.0092 Score=60.79 Aligned_cols=25 Identities=28% Similarity=0.522 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCC
Q 001041 414 TAALVGQSGSGKSTVISLIERFYDP 438 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~~ 438 (1178)
+++|+|++|+|||||++.+.+...+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~ 28 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKS 28 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC---
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc
Confidence 6899999999999999999996433
No 466
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.17 E-value=0.0029 Score=70.89 Aligned_cols=37 Identities=27% Similarity=0.387 Sum_probs=33.7
Q ss_pred ccccceeEEEeCCCE--EEEEcCCCCcHHHHHHHHhccC
Q 001041 400 QIFSGFSISISSGTT--AALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 400 ~~l~~i~l~i~~g~~--~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
.+++.+++.+++|+. ++|+|++||||||+.++|.+.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 477888999999999 9999999999999999999865
No 467
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.16 E-value=0.0059 Score=70.80 Aligned_cols=42 Identities=29% Similarity=0.422 Sum_probs=37.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCC
Q 001041 1070 AGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK 1111 (1178)
Q Consensus 1070 ~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~ 1111 (1178)
++..+++||++||||||++..|.+.+.+..++|.+-+.|+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r 137 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR 137 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccc
Confidence 578999999999999999999999999998999987777643
No 468
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.16 E-value=0.052 Score=61.76 Aligned_cols=27 Identities=22% Similarity=0.270 Sum_probs=24.0
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccC
Q 001041 410 SSGTTAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
++..-+.|+||+|+|||||++++....
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999999875
No 469
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.15 E-value=0.012 Score=64.91 Aligned_cols=38 Identities=24% Similarity=0.312 Sum_probs=30.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCccc
Q 001041 1070 AGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI 1109 (1178)
Q Consensus 1070 ~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI 1109 (1178)
.|..+.|+|+|||||||+++.|..-++ .|.+.||+-.+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~D~~ 69 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDNDTF 69 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECTHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEechHh
Confidence 456799999999999999999987553 47788887333
No 470
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.15 E-value=0.01 Score=60.01 Aligned_cols=27 Identities=22% Similarity=0.349 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCC
Q 001041 411 SGTTAALVGQSGSGKSTVISLIERFYD 437 (1178)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~ 437 (1178)
.|.++.|+|++||||||+.+.|...+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 367899999999999999999998764
No 471
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.08 E-value=0.0091 Score=62.03 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001041 414 TAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1178)
+++|+|++||||||+++.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 472
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.06 E-value=0.012 Score=61.99 Aligned_cols=32 Identities=41% Similarity=0.506 Sum_probs=25.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECC
Q 001041 1070 AGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG 1106 (1178)
Q Consensus 1070 ~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG 1106 (1178)
.+-.|+|+|++||||||+++.|.++ |...||.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~l-----g~~~id~ 34 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFADL-----GINVIDA 34 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHT-----TCEEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHc-----CCEEEEc
Confidence 3457999999999999999999872 5556654
No 473
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.02 E-value=0.012 Score=61.12 Aligned_cols=29 Identities=28% Similarity=0.598 Sum_probs=22.9
Q ss_pred cceEEeeCCCEEEEEcCCCCCHHHHHHHHh
Q 001041 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQ 1092 (1178)
Q Consensus 1063 ~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~ 1092 (1178)
+.+++..+| ..+|+||+|||||||+.+|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 344555554 88999999999999999874
No 474
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.01 E-value=0.011 Score=60.49 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhcccC
Q 001041 1071 GKTVALVGESGSGKSTVVSLLQRFYD 1096 (1178)
Q Consensus 1071 Ge~vaIVG~SGSGKSTL~~lL~R~y~ 1096 (1178)
|..+.|+|++||||||+++.|..-+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999988553
No 475
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.97 E-value=0.0093 Score=61.22 Aligned_cols=27 Identities=19% Similarity=0.301 Sum_probs=24.1
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhccc
Q 001041 1069 RAGKTVALVGESGSGKSTVVSLLQRFY 1095 (1178)
Q Consensus 1069 ~~Ge~vaIVG~SGSGKSTL~~lL~R~y 1095 (1178)
++|..+.|+|++||||||+++.|..-+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467889999999999999999998755
No 476
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.97 E-value=0.012 Score=60.99 Aligned_cols=27 Identities=22% Similarity=0.241 Sum_probs=24.7
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhccc
Q 001041 1069 RAGKTVALVGESGSGKSTVVSLLQRFY 1095 (1178)
Q Consensus 1069 ~~Ge~vaIVG~SGSGKSTL~~lL~R~y 1095 (1178)
.+|..++|+|++||||||+++.|...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999999876
No 477
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.97 E-value=0.014 Score=64.40 Aligned_cols=35 Identities=37% Similarity=0.394 Sum_probs=28.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECC
Q 001041 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447 (1178)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g 447 (1178)
+|..+.|+|++||||||+.+.|...++ .|.+.|++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 467899999999999999999988663 35677765
No 478
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.92 E-value=0.012 Score=62.83 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=23.4
Q ss_pred eeCCCEEEEEcCCCCCHHHHHHHHhc
Q 001041 1068 IRAGKTVALVGESGSGKSTVVSLLQR 1093 (1178)
Q Consensus 1068 I~~Ge~vaIVG~SGSGKSTL~~lL~R 1093 (1178)
-++|.+++|+|++||||||+++.|.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 46788999999999999999999986
No 479
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.88 E-value=0.012 Score=59.12 Aligned_cols=19 Identities=42% Similarity=0.679 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 001041 1073 TVALVGESGSGKSTVVSLL 1091 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL 1091 (1178)
.++|+|++||||||+++.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 480
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.86 E-value=0.0056 Score=63.23 Aligned_cols=30 Identities=33% Similarity=0.488 Sum_probs=25.9
Q ss_pred EEeeCCCEEEEEcCCCCCHHHHHHHHhccc
Q 001041 1066 LKIRAGKTVALVGESGSGKSTVVSLLQRFY 1095 (1178)
Q Consensus 1066 f~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y 1095 (1178)
..++++..|+|+|++||||||+++.|.+.+
T Consensus 7 ~~~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 7 EDLRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 345677899999999999999999998765
No 481
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.83 E-value=0.0094 Score=60.56 Aligned_cols=27 Identities=26% Similarity=0.236 Sum_probs=23.8
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhccc
Q 001041 1069 RAGKTVALVGESGSGKSTVVSLLQRFY 1095 (1178)
Q Consensus 1069 ~~Ge~vaIVG~SGSGKSTL~~lL~R~y 1095 (1178)
..+..+.|+|++||||||+++.|..-+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 467889999999999999999998654
No 482
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.83 E-value=0.011 Score=60.21 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=23.5
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccC
Q 001041 410 SSGTTAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
.+|.+++|+|++||||||+.+.|...+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998654
No 483
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.81 E-value=0.081 Score=60.10 Aligned_cols=29 Identities=24% Similarity=0.327 Sum_probs=25.2
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhccC
Q 001041 408 SISSGTTAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
-+++|+++.|.|++|||||||+..+....
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 37899999999999999999998776544
No 484
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.81 E-value=0.04 Score=57.39 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 001041 414 TAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
.+.|.||+|+||||+++.+...+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 49999999999999999998765
No 485
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.81 E-value=0.012 Score=60.00 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 001041 414 TAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
.+.|+|||||||+||++.|+...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 37899999999999999998765
No 486
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.79 E-value=0.11 Score=57.50 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccC
Q 001041 411 SGTTAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
++.-+.|+||+|+|||++++++...+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 35578999999999999999888766
No 487
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.76 E-value=0.013 Score=60.48 Aligned_cols=36 Identities=42% Similarity=0.622 Sum_probs=26.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc-----CCC------CCeEEECCcc
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFY-----DPD------AGHITLDGVE 1108 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y-----~p~------~G~I~IDG~d 1108 (1178)
+|+|||++|+|||||++.|.+.. .|. .+.+.+||.+
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEE 71 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEE
Confidence 79999999999999999996432 222 3456777753
No 488
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.73 E-value=0.013 Score=60.36 Aligned_cols=27 Identities=30% Similarity=0.482 Sum_probs=24.1
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhccc
Q 001041 1069 RAGKTVALVGESGSGKSTVVSLLQRFY 1095 (1178)
Q Consensus 1069 ~~Ge~vaIVG~SGSGKSTL~~lL~R~y 1095 (1178)
+++..++|+|++||||||+++.|.+.+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998655
No 489
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.72 E-value=0.051 Score=60.00 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=22.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccC
Q 001041 412 GTTAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
...+.+.||+|+|||+|+++|...+
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468889999999999999999876
No 490
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.70 E-value=0.039 Score=63.32 Aligned_cols=28 Identities=32% Similarity=0.503 Sum_probs=24.7
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccCC
Q 001041 410 SSGTTAALVGQSGSGKSTVISLIERFYD 437 (1178)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~~ 437 (1178)
..+..+.|.||+|+|||||++.+.+.+.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4577899999999999999999998763
No 491
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.67 E-value=0.024 Score=57.68 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001041 414 TAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1178)
+++|+|++|+|||||++.+.+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 789999999999999976665
No 492
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.66 E-value=0.0082 Score=70.92 Aligned_cols=59 Identities=7% Similarity=0.151 Sum_probs=46.2
Q ss_pred cccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCC-eEEECCcccCCCChHHHHHh
Q 001041 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG-HITLDGVEIQKLQLKWLRQQ 1120 (1178)
Q Consensus 1059 ~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G-~I~IDG~dI~~i~l~~LR~~ 1120 (1178)
+.|+++..-+++|+.+.|.||+|+||||++..+++-.-+..| .+.+-+.+ ++.+.++++
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E---~s~~~l~~r 250 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE---MSAQQLVMR 250 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS---SCHHHHHHH
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC---CCHHHHHHH
Confidence 368888888999999999999999999999999988766545 66665543 445555554
No 493
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.66 E-value=0.013 Score=67.67 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=31.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEEC
Q 001041 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID 446 (1178)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~ 446 (1178)
.+..++|+|++||||||+++.+++.+.+..+.|.+-
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~ 69 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII 69 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 577899999999999999999998877788888763
No 494
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.60 E-value=0.078 Score=60.46 Aligned_cols=38 Identities=24% Similarity=0.429 Sum_probs=29.3
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECC
Q 001041 410 SSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447 (1178)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g 447 (1178)
.+|..+.|.||+|+|||++++.+...+......+.+++
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~ 105 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccc
Confidence 45778999999999999999999988754333344443
No 495
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.57 E-value=0.016 Score=58.07 Aligned_cols=24 Identities=29% Similarity=0.180 Sum_probs=21.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccC
Q 001041 413 TTAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
.+++|+|++||||||+.+.|...+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998765
No 496
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.56 E-value=0.032 Score=55.99 Aligned_cols=25 Identities=20% Similarity=0.448 Sum_probs=22.0
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhc
Q 001041 1069 RAGKTVALVGESGSGKSTVVSLLQR 1093 (1178)
Q Consensus 1069 ~~Ge~vaIVG~SGSGKSTL~~lL~R 1093 (1178)
++.-+|++||++|+|||||++.|.+
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3456899999999999999999975
No 497
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.54 E-value=0.014 Score=62.91 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFY 1095 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y 1095 (1178)
.++|+|+||||||||++.|++-+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 58999999999999999998654
No 498
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.52 E-value=0.017 Score=60.33 Aligned_cols=28 Identities=36% Similarity=0.485 Sum_probs=24.5
Q ss_pred eeCCCEEEEEcCCCCCHHHHHHHHhccc
Q 001041 1068 IRAGKTVALVGESGSGKSTVVSLLQRFY 1095 (1178)
Q Consensus 1068 I~~Ge~vaIVG~SGSGKSTL~~lL~R~y 1095 (1178)
.++|..|+|+|++||||||+++.|...+
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3568899999999999999999998753
No 499
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.50 E-value=0.016 Score=62.27 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcc
Q 001041 1072 KTVALVGESGSGKSTVVSLLQRF 1094 (1178)
Q Consensus 1072 e~vaIVG~SGSGKSTL~~lL~R~ 1094 (1178)
=+|+|||++|+|||||++.|++-
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCcHHHHHHHHhCC
Confidence 36899999999999999999864
No 500
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=94.48 E-value=0.025 Score=63.89 Aligned_cols=36 Identities=28% Similarity=0.513 Sum_probs=28.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhc-----------cCCCCCCcEEECC
Q 001041 412 GTTAALVGQSGSGKSTVISLIER-----------FYDPQAGEVLIDG 447 (1178)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g-----------~~~~~~G~i~i~g 447 (1178)
|-+++|||.+|+|||||++.|.+ -.+|..|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 46799999999999999999998 2345667666654
Done!