Query 001042
Match_columns 1178
No_of_seqs 1307 out of 4678
Neff 8.7
Searched_HMMs 46136
Date Thu Mar 28 14:11:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001042.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001042hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1090 Predicted dual-specifi 100.0 1.7E-82 3.7E-87 723.7 31.3 606 1-685 1-640 (1732)
2 KOG3569 RAS signaling inhibito 100.0 2.2E-66 4.7E-71 544.6 28.2 378 2-452 11-397 (425)
3 KOG3570 MAPK-activating protei 100.0 1.1E-51 2.5E-56 465.9 25.5 417 2-438 9-561 (1588)
4 KOG0271 Notchless-like WD40 re 100.0 1.4E-49 3.1E-54 418.0 23.7 355 761-1173 108-479 (480)
5 KOG2080 Uncharacterized conser 100.0 5.2E-48 1.1E-52 436.7 16.8 387 36-433 101-645 (1295)
6 KOG0271 Notchless-like WD40 re 100.0 4.8E-42 1E-46 361.3 25.6 313 735-1074 109-479 (480)
7 KOG0291 WD40-repeat-containing 100.0 4.1E-38 8.8E-43 356.7 42.4 399 739-1177 53-552 (893)
8 KOG0291 WD40-repeat-containing 100.0 3.8E-37 8.3E-42 348.8 43.5 386 762-1177 139-614 (893)
9 KOG0272 U4/U6 small nuclear ri 100.0 2.7E-39 5.9E-44 345.8 21.6 277 767-1074 174-458 (459)
10 KOG0319 WD40-repeat-containing 100.0 5.3E-38 1.1E-42 356.3 31.7 364 767-1178 104-580 (775)
11 KOG0272 U4/U6 small nuclear ri 100.0 7.4E-39 1.6E-43 342.5 22.9 269 888-1173 182-458 (459)
12 KOG0318 WD40 repeat stress pro 100.0 1E-35 2.2E-40 325.6 41.3 333 818-1177 138-562 (603)
13 KOG0286 G-protein beta subunit 100.0 7.2E-36 1.6E-40 305.8 32.8 282 819-1116 47-343 (343)
14 KOG2127 Calmodulin-binding pro 100.0 1.2E-37 2.6E-42 373.1 17.7 343 189-548 5-366 (1020)
15 KOG0319 WD40-repeat-containing 100.0 8.2E-36 1.8E-40 338.6 31.4 381 759-1175 138-619 (775)
16 smart00799 DENN Domain found i 100.0 4.1E-36 8.9E-41 309.5 19.6 180 123-306 1-183 (183)
17 KOG0273 Beta-transducin family 100.0 1.6E-34 3.5E-39 312.8 31.8 333 763-1118 173-523 (524)
18 KOG0318 WD40 repeat stress pro 100.0 3.1E-33 6.7E-38 306.2 41.3 367 765-1177 56-519 (603)
19 PF02141 DENN: DENN (AEX-3) do 100.0 1.1E-36 2.4E-41 318.0 13.3 183 122-306 1-185 (185)
20 KOG0286 G-protein beta subunit 100.0 2.2E-33 4.7E-38 287.6 33.2 283 875-1173 47-343 (343)
21 KOG0306 WD40-repeat-containing 100.0 3.5E-33 7.7E-38 316.6 34.3 366 759-1176 98-665 (888)
22 KOG0279 G protein beta subunit 100.0 2.2E-32 4.8E-37 278.9 33.2 294 872-1176 4-314 (315)
23 KOG0273 Beta-transducin family 100.0 1.2E-32 2.6E-37 298.3 32.9 326 819-1175 170-523 (524)
24 KOG0279 G protein beta subunit 100.0 1.8E-32 4E-37 279.5 31.6 285 819-1118 7-313 (315)
25 KOG0315 G-protein beta subunit 100.0 1.1E-32 2.4E-37 276.1 29.0 271 893-1178 10-291 (311)
26 KOG0296 Angio-associated migra 100.0 1.9E-32 4.1E-37 288.7 31.4 324 758-1118 54-398 (399)
27 KOG0295 WD40 repeat-containing 100.0 3.9E-33 8.4E-38 293.6 23.8 309 849-1174 74-405 (406)
28 KOG0281 Beta-TrCP (transducin 100.0 2.8E-34 6E-39 298.7 14.4 274 826-1120 196-479 (499)
29 KOG0295 WD40 repeat-containing 100.0 5.6E-33 1.2E-37 292.4 23.1 283 761-1075 101-405 (406)
30 KOG0315 G-protein beta subunit 100.0 6.9E-32 1.5E-36 270.5 29.1 281 781-1096 11-306 (311)
31 KOG0306 WD40-repeat-containing 100.0 2.5E-31 5.4E-36 301.7 36.6 366 760-1177 57-582 (888)
32 KOG0296 Angio-associated migra 100.0 4.3E-31 9.2E-36 278.6 32.8 327 817-1175 54-398 (399)
33 KOG0285 Pleiotropic regulator 100.0 6E-32 1.3E-36 283.0 26.1 291 873-1175 141-439 (460)
34 KOG0281 Beta-TrCP (transducin 100.0 2.2E-33 4.8E-38 292.0 15.0 281 882-1177 196-479 (499)
35 KOG0265 U5 snRNP-specific prot 100.0 2.9E-31 6.2E-36 273.3 27.2 278 763-1073 42-335 (338)
36 KOG0645 WD40 repeat protein [G 100.0 2.7E-30 5.8E-35 262.6 33.5 293 819-1175 6-311 (312)
37 KOG0263 Transcription initiati 100.0 1.2E-31 2.6E-36 309.0 26.5 255 768-1036 378-651 (707)
38 KOG0284 Polyadenylation factor 100.0 1.3E-32 2.8E-37 293.2 16.4 275 768-1076 96-380 (464)
39 KOG0285 Pleiotropic regulator 100.0 2E-31 4.2E-36 279.2 24.8 286 758-1077 140-440 (460)
40 KOG0265 U5 snRNP-specific prot 100.0 6.1E-31 1.3E-35 270.9 27.1 284 817-1116 37-336 (338)
41 KOG0263 Transcription initiati 100.0 3.4E-31 7.3E-36 305.2 26.8 321 830-1163 369-703 (707)
42 KOG1408 WD40 repeat protein [F 100.0 3.9E-30 8.4E-35 288.8 33.0 395 738-1175 53-713 (1080)
43 KOG0284 Polyadenylation factor 100.0 4.6E-32 1E-36 289.0 16.6 275 884-1175 99-380 (464)
44 KOG0645 WD40 repeat protein [G 100.0 1.8E-29 4E-34 256.5 30.2 282 763-1076 9-311 (312)
45 cd00200 WD40 WD40 domain, foun 100.0 6.8E-29 1.5E-33 277.1 36.9 281 820-1116 2-289 (289)
46 KOG0276 Vesicle coat complex C 100.0 2.1E-29 4.7E-34 280.4 32.1 278 821-1114 7-295 (794)
47 KOG0266 WD40 repeat-containing 100.0 1E-29 2.2E-34 303.3 31.8 280 767-1076 158-454 (456)
48 KOG0316 Conserved WD40 repeat- 100.0 9.2E-30 2E-34 253.1 25.7 278 876-1173 10-297 (307)
49 cd00200 WD40 WD40 domain, foun 100.0 9.2E-29 2E-33 276.0 36.9 280 877-1173 3-289 (289)
50 KOG0276 Vesicle coat complex C 100.0 4.9E-29 1.1E-33 277.5 32.2 274 765-1071 10-294 (794)
51 KOG0293 WD40 repeat-containing 100.0 7.3E-30 1.6E-34 271.9 24.2 317 729-1077 184-514 (519)
52 KOG0266 WD40 repeat-containing 100.0 8.3E-29 1.8E-33 295.5 34.3 282 877-1175 152-454 (456)
53 KOG0282 mRNA splicing factor [ 100.0 1.4E-30 2.9E-35 283.9 17.0 285 873-1173 204-503 (503)
54 PLN00181 protein SPA1-RELATED; 100.0 5.4E-28 1.2E-32 310.0 43.6 295 822-1174 478-792 (793)
55 KOG0292 Vesicle coat complex C 100.0 3.9E-28 8.4E-33 279.1 33.3 337 768-1163 9-383 (1202)
56 KOG0293 WD40 repeat-containing 100.0 3.1E-29 6.7E-34 267.1 22.0 282 876-1176 217-514 (519)
57 KOG0313 Microtubule binding pr 100.0 2.3E-28 4.9E-33 259.0 25.3 285 759-1076 96-418 (423)
58 KOG0274 Cdc4 and related F-box 100.0 3E-28 6.5E-33 289.1 28.9 273 767-1078 207-484 (537)
59 KOG0282 mRNA splicing factor [ 100.0 2.1E-29 4.6E-34 274.6 16.8 283 819-1116 206-503 (503)
60 KOG0316 Conserved WD40 repeat- 100.0 9E-28 1.9E-32 239.0 25.6 278 819-1117 9-298 (307)
61 KOG0274 Cdc4 and related F-box 100.0 1.5E-27 3.2E-32 283.2 32.3 278 822-1121 202-485 (537)
62 PLN00181 protein SPA1-RELATED; 100.0 4.7E-27 1E-31 301.3 39.7 285 764-1075 479-792 (793)
63 KOG0278 Serine/threonine kinas 100.0 9.2E-29 2E-33 247.8 17.9 282 877-1177 8-299 (334)
64 KOG0278 Serine/threonine kinas 100.0 1.2E-28 2.5E-33 247.1 17.3 285 758-1078 4-299 (334)
65 KOG0643 Translation initiation 100.0 6.7E-27 1.5E-31 237.1 28.4 294 878-1176 5-318 (327)
66 KOG0292 Vesicle coat complex C 100.0 2.2E-27 4.7E-32 273.0 26.1 272 888-1175 16-321 (1202)
67 KOG0313 Microtubule binding pr 100.0 9.3E-27 2E-31 246.8 26.8 278 881-1175 103-418 (423)
68 KOG0640 mRNA cleavage stimulat 100.0 5.1E-27 1.1E-31 241.7 22.5 305 758-1076 102-426 (430)
69 KOG0643 Translation initiation 99.9 4.1E-26 8.8E-31 231.5 26.0 285 760-1078 2-319 (327)
70 KOG1407 WD40 repeat protein [F 99.9 6.1E-26 1.3E-30 229.7 25.5 280 877-1176 14-312 (313)
71 KOG0275 Conserved WD40 repeat- 99.9 2.8E-27 6.1E-32 244.2 16.0 265 847-1116 221-507 (508)
72 KOG1539 WD repeat protein [Gen 99.9 5.8E-25 1.3E-29 253.3 35.8 382 765-1177 111-608 (910)
73 KOG0308 Conserved WD40 repeat- 99.9 3.3E-26 7.2E-31 256.9 22.2 324 849-1177 35-395 (735)
74 KOG0275 Conserved WD40 repeat- 99.9 6.4E-27 1.4E-31 241.6 14.4 268 888-1173 220-507 (508)
75 KOG0288 WD40 repeat protein Ti 99.9 1.6E-26 3.5E-31 247.4 16.2 282 819-1116 167-459 (459)
76 KOG0301 Phospholipase A2-activ 99.9 2.2E-25 4.8E-30 252.3 26.1 277 819-1119 6-289 (745)
77 KOG2106 Uncharacterized conser 99.9 1.7E-23 3.7E-28 228.6 39.6 368 757-1174 93-520 (626)
78 KOG1407 WD40 repeat protein [F 99.9 5.5E-25 1.2E-29 222.8 26.0 275 762-1068 14-294 (313)
79 KOG0310 Conserved WD40 repeat- 99.9 3.8E-25 8.3E-30 242.2 25.7 280 762-1077 20-310 (487)
80 KOG0268 Sof1-like rRNA process 99.9 3.6E-26 7.8E-31 240.7 16.5 282 874-1176 57-346 (433)
81 KOG0277 Peroxisomal targeting 99.9 3.6E-25 7.7E-30 223.2 22.2 238 826-1075 59-308 (311)
82 KOG0305 Anaphase promoting com 99.9 5.4E-25 1.2E-29 251.3 25.7 269 775-1078 184-463 (484)
83 KOG0288 WD40 repeat protein Ti 99.9 7E-26 1.5E-30 242.5 16.9 280 877-1173 169-459 (459)
84 KOG1539 WD repeat protein [Gen 99.9 4.7E-24 1E-28 245.9 33.1 360 763-1173 197-646 (910)
85 KOG0268 Sof1-like rRNA process 99.9 4.4E-26 9.5E-31 240.1 14.6 282 819-1119 58-346 (433)
86 KOG0277 Peroxisomal targeting 99.9 1.1E-24 2.3E-29 219.8 20.9 259 901-1174 36-308 (311)
87 KOG1446 Histone H3 (Lys4) meth 99.9 4.8E-23 1E-27 215.5 33.0 280 877-1175 8-303 (311)
88 KOG0973 Histone transcription 99.9 4.7E-24 1E-28 254.4 28.9 292 768-1078 13-357 (942)
89 KOG0640 mRNA cleavage stimulat 99.9 2.8E-24 6E-29 221.7 23.2 305 819-1175 104-426 (430)
90 KOG0308 Conserved WD40 repeat- 99.9 7.3E-25 1.6E-29 246.2 20.2 320 778-1122 35-397 (735)
91 KOG0283 WD40 repeat-containing 99.9 2.2E-24 4.7E-29 251.5 24.9 244 820-1077 259-577 (712)
92 KOG0299 U3 snoRNP-associated p 99.9 3.9E-24 8.5E-29 232.4 25.0 287 761-1065 135-444 (479)
93 KOG1408 WD40 repeat protein [F 99.9 3.8E-24 8.1E-29 241.0 25.7 329 770-1119 326-714 (1080)
94 KOG0301 Phospholipase A2-activ 99.9 4.6E-24 1E-28 241.7 26.5 278 872-1176 3-289 (745)
95 KOG0641 WD40 repeat protein [G 99.9 6.7E-23 1.5E-27 202.5 31.3 299 762-1076 26-349 (350)
96 PTZ00421 coronin; Provisional 99.9 2.3E-23 5.1E-28 247.5 33.5 301 759-1078 11-333 (493)
97 KOG0305 Anaphase promoting com 99.9 8.3E-24 1.8E-28 241.6 27.3 268 844-1119 182-462 (484)
98 KOG0310 Conserved WD40 repeat- 99.9 8.4E-24 1.8E-28 231.7 25.2 274 826-1118 25-309 (487)
99 KOG0299 U3 snoRNP-associated p 99.9 1E-23 2.3E-28 229.1 25.1 273 820-1106 135-443 (479)
100 KOG0300 WD40 repeat-containing 99.9 7.7E-24 1.7E-28 218.6 22.1 317 762-1119 142-477 (481)
101 KOG0289 mRNA splicing factor [ 99.9 2.1E-23 4.5E-28 224.6 26.2 276 828-1117 220-505 (506)
102 KOG0289 mRNA splicing factor [ 99.9 2.6E-23 5.6E-28 223.9 26.8 270 890-1174 228-505 (506)
103 KOG0300 WD40 repeat-containing 99.9 1.7E-23 3.6E-28 216.1 24.0 303 854-1177 127-478 (481)
104 KOG2048 WD40 repeat protein [G 99.9 7.1E-22 1.5E-26 224.0 38.6 371 765-1178 66-508 (691)
105 PF12335 SBF2: Myotubularin pr 99.9 2.5E-25 5.5E-30 230.8 9.5 144 522-692 1-156 (225)
106 KOG1063 RNA polymerase II elon 99.9 3.2E-23 6.9E-28 234.8 26.8 337 819-1177 183-650 (764)
107 KOG2106 Uncharacterized conser 99.9 5.8E-22 1.2E-26 216.7 34.9 355 769-1174 247-625 (626)
108 PTZ00420 coronin; Provisional 99.9 3.3E-22 7.2E-27 238.3 36.1 245 899-1158 50-319 (568)
109 KOG0294 WD40 repeat-containing 99.9 5.6E-23 1.2E-27 213.6 24.9 241 819-1078 35-283 (362)
110 KOG0639 Transducin-like enhanc 99.9 6.4E-24 1.4E-28 231.1 18.3 284 761-1075 412-703 (705)
111 KOG1446 Histone H3 (Lys4) meth 99.9 1.3E-21 2.8E-26 204.9 34.4 281 820-1118 7-303 (311)
112 KOG0973 Histone transcription 99.9 1.3E-22 2.9E-27 242.2 29.3 273 888-1176 20-356 (942)
113 KOG0772 Uncharacterized conser 99.9 6.7E-23 1.4E-27 224.5 24.3 287 819-1119 159-488 (641)
114 PTZ00421 coronin; Provisional 99.9 6E-22 1.3E-26 235.5 34.6 231 889-1120 28-292 (493)
115 KOG2048 WD40 repeat protein [G 99.9 2.8E-21 6.2E-26 219.1 37.0 283 823-1118 21-319 (691)
116 KOG0647 mRNA export protein (c 99.9 1.9E-22 4.1E-27 208.5 24.7 267 823-1106 23-311 (347)
117 KOG2096 WD40 repeat protein [G 99.9 3.6E-22 7.7E-27 207.1 26.6 295 819-1174 78-401 (420)
118 KOG0641 WD40 repeat protein [G 99.9 2.4E-21 5.3E-26 191.5 31.0 304 819-1175 25-349 (350)
119 KOG0294 WD40 repeat-containing 99.9 5E-22 1.1E-26 206.5 26.0 261 854-1120 4-283 (362)
120 PTZ00420 coronin; Provisional 99.9 1.8E-21 4E-26 232.0 33.0 223 940-1177 50-295 (568)
121 KOG0283 WD40 repeat-containing 99.9 3.2E-22 6.9E-27 233.6 25.1 243 915-1175 258-576 (712)
122 KOG0772 Uncharacterized conser 99.9 1E-21 2.2E-26 215.3 24.3 280 877-1172 161-484 (641)
123 KOG0647 mRNA export protein (c 99.9 2.8E-21 6.1E-26 199.9 26.1 261 886-1163 32-311 (347)
124 KOG1063 RNA polymerase II elon 99.9 6.2E-21 1.3E-25 216.3 30.3 361 775-1175 21-437 (764)
125 KOG4283 Transcription-coupled 99.9 1.9E-21 4.2E-26 199.7 23.4 279 880-1174 40-364 (397)
126 KOG0646 WD40 repeat protein [G 99.9 2.5E-21 5.5E-26 211.2 24.2 266 903-1176 18-308 (476)
127 KOG0264 Nucleosome remodeling 99.9 1.7E-21 3.7E-26 212.6 22.5 247 820-1077 117-405 (422)
128 KOG1036 Mitotic spindle checkp 99.9 1.2E-20 2.7E-25 196.4 27.7 265 883-1165 13-294 (323)
129 KOG1036 Mitotic spindle checkp 99.9 8.5E-21 1.8E-25 197.6 26.4 262 826-1108 12-294 (323)
130 KOG1332 Vesicle coat complex C 99.9 7.7E-22 1.7E-26 198.2 17.3 244 821-1076 5-286 (299)
131 KOG0264 Nucleosome remodeling 99.9 3.4E-21 7.4E-26 210.3 22.0 252 921-1177 122-406 (422)
132 KOG0321 WD40 repeat-containing 99.9 4.4E-21 9.5E-26 215.6 22.9 271 893-1177 64-393 (720)
133 KOG2055 WD40 repeat protein [G 99.9 1.3E-20 2.8E-25 204.9 23.8 285 827-1175 213-512 (514)
134 KOG1332 Vesicle coat complex C 99.9 4.2E-21 9E-26 193.0 18.6 244 920-1175 8-286 (299)
135 KOG1274 WD40 repeat protein [G 99.9 4E-20 8.7E-25 216.3 29.1 285 824-1172 10-297 (933)
136 KOG0646 WD40 repeat protein [G 99.9 1.7E-20 3.7E-25 204.8 23.0 283 856-1156 12-330 (476)
137 KOG0639 Transducin-like enhanc 99.9 1E-20 2.2E-25 206.4 19.9 275 825-1117 417-703 (705)
138 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 7.5E-19 1.6E-23 199.5 36.0 264 893-1178 1-282 (300)
139 KOG0267 Microtubule severing p 99.9 9.4E-22 2E-26 223.7 10.2 232 823-1068 24-260 (825)
140 KOG2096 WD40 repeat protein [G 99.9 5.3E-20 1.2E-24 191.1 21.2 285 762-1078 80-404 (420)
141 KOG0269 WD40 repeat-containing 99.8 8.8E-21 1.9E-25 217.6 16.8 285 768-1078 39-342 (839)
142 KOG1963 WD40 repeat protein [G 99.8 1.5E-18 3.3E-23 203.3 35.2 382 757-1176 5-539 (792)
143 KOG0269 WD40 repeat-containing 99.8 2.2E-20 4.7E-25 214.4 19.2 267 849-1118 49-340 (839)
144 KOG0650 WD40 repeat nucleolar 99.8 1.1E-19 2.4E-24 202.8 24.1 318 819-1172 392-732 (733)
145 KOG0267 Microtubule severing p 99.8 2.1E-21 4.5E-26 220.9 10.4 249 895-1166 6-259 (825)
146 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 4.3E-18 9.3E-23 193.3 37.9 263 851-1120 1-281 (300)
147 COG2319 FOG: WD40 repeat [Gene 99.8 3.5E-17 7.5E-22 193.1 46.5 366 762-1176 59-443 (466)
148 KOG2445 Nuclear pore complex c 99.8 5.3E-19 1.2E-23 183.5 25.8 255 920-1175 10-318 (361)
149 KOG2055 WD40 repeat protein [G 99.8 2.1E-19 4.7E-24 195.5 23.3 279 768-1076 213-512 (514)
150 KOG4378 Nuclear protein COP1 [ 99.8 1E-19 2.2E-24 198.6 20.8 285 782-1098 6-301 (673)
151 KOG4283 Transcription-coupled 99.8 4.1E-19 8.9E-24 182.7 22.7 293 765-1075 40-364 (397)
152 KOG0321 WD40 repeat-containing 99.8 4.4E-19 9.6E-24 199.7 22.6 320 849-1173 62-443 (720)
153 smart00800 uDENN Domain always 99.8 2.7E-20 5.8E-25 168.5 10.3 89 1-104 1-89 (89)
154 KOG1273 WD40 repeat protein [G 99.8 1.1E-18 2.5E-23 181.2 23.5 281 877-1176 19-323 (405)
155 KOG1274 WD40 repeat protein [G 99.8 1.7E-18 3.8E-23 202.7 27.8 267 765-1069 10-293 (933)
156 KOG2445 Nuclear pore complex c 99.8 2.1E-18 4.5E-23 179.2 24.7 241 823-1076 9-318 (361)
157 KOG1445 Tumor-specific antigen 99.8 2E-18 4.3E-23 192.8 25.8 197 760-983 71-281 (1012)
158 KOG1538 Uncharacterized conser 99.8 1.6E-18 3.4E-23 194.5 24.1 266 770-1076 14-293 (1081)
159 KOG0270 WD40 repeat-containing 99.8 7.8E-19 1.7E-23 190.7 19.4 229 892-1120 191-451 (463)
160 KOG0650 WD40 repeat nucleolar 99.8 1.8E-18 3.9E-23 193.2 22.7 311 760-1115 392-732 (733)
161 KOG1034 Transcriptional repres 99.8 4.7E-18 1E-22 177.9 24.2 292 819-1118 30-383 (385)
162 KOG0270 WD40 repeat-containing 99.8 1.2E-18 2.6E-23 189.3 19.8 230 849-1078 190-451 (463)
163 KOG4378 Nuclear protein COP1 [ 99.8 2.7E-18 5.8E-23 187.5 22.6 279 861-1157 12-305 (673)
164 KOG1273 WD40 repeat protein [G 99.8 1.2E-17 2.7E-22 173.5 24.4 272 830-1119 26-323 (405)
165 COG2319 FOG: WD40 repeat [Gene 99.8 8.1E-16 1.8E-20 181.4 42.7 326 822-1177 60-402 (466)
166 KOG4328 WD40 protein [Function 99.8 5.3E-18 1.1E-22 184.7 21.2 288 764-1077 182-496 (498)
167 KOG4328 WD40 protein [Function 99.8 2.1E-17 4.5E-22 180.1 22.0 287 874-1176 177-496 (498)
168 KOG2919 Guanine nucleotide-bin 99.8 2.4E-17 5.3E-22 172.0 21.0 280 774-1067 55-361 (406)
169 KOG0322 G-protein beta subunit 99.8 1.2E-17 2.7E-22 169.9 17.4 281 876-1174 7-322 (323)
170 KOG0302 Ribosome Assembly prot 99.8 3.5E-17 7.5E-22 174.2 21.3 241 821-1073 145-435 (440)
171 KOG1188 WD40 repeat protein [G 99.8 2.3E-17 5E-22 173.9 19.7 271 894-1175 41-346 (376)
172 KOG1009 Chromatin assembly com 99.8 6.8E-17 1.5E-21 174.0 23.7 290 767-1079 12-375 (434)
173 KOG0302 Ribosome Assembly prot 99.8 3.3E-17 7.1E-22 174.4 19.8 253 762-1028 145-433 (440)
174 KOG2919 Guanine nucleotide-bin 99.8 8.4E-17 1.8E-21 168.1 22.2 263 888-1166 56-361 (406)
175 KOG0307 Vesicle coat complex C 99.7 1.4E-17 3E-22 200.2 16.4 244 828-1079 65-330 (1049)
176 KOG1517 Guanine nucleotide bin 99.7 2.9E-16 6.2E-21 185.4 24.3 282 886-1177 1069-1383(1387)
177 KOG1034 Transcriptional repres 99.7 4E-16 8.7E-21 163.6 22.6 284 879-1176 34-384 (385)
178 KOG0642 Cell-cycle nuclear pro 99.7 4.8E-17 1E-21 181.8 15.5 256 819-1089 286-572 (577)
179 KOG1240 Protein kinase contain 99.7 3.5E-16 7.7E-21 187.7 23.6 343 816-1173 1037-1431(1431)
180 KOG0649 WD40 repeat protein [G 99.7 1.7E-15 3.7E-20 152.5 24.5 277 768-1073 10-313 (325)
181 KOG1538 Uncharacterized conser 99.7 4.1E-16 8.8E-21 175.4 22.3 265 887-1175 18-293 (1081)
182 KOG0307 Vesicle coat complex C 99.7 6.7E-17 1.5E-21 194.4 16.4 254 760-1037 56-330 (1049)
183 KOG1009 Chromatin assembly com 99.7 1.1E-15 2.3E-20 164.8 23.7 305 827-1175 13-372 (434)
184 KOG1445 Tumor-specific antigen 99.7 1.2E-15 2.5E-20 171.0 24.2 199 964-1175 627-844 (1012)
185 KOG4227 WD40 repeat protein [G 99.7 1E-15 2.2E-20 162.7 21.1 291 761-1076 49-387 (609)
186 KOG0303 Actin-binding protein 99.7 2.2E-15 4.9E-20 161.3 22.7 213 819-1079 73-297 (472)
187 KOG0649 WD40 repeat protein [G 99.7 1.8E-14 3.9E-19 145.2 27.3 262 847-1116 18-314 (325)
188 KOG4227 WD40 repeat protein [G 99.7 3.2E-15 6.8E-20 159.1 22.4 297 876-1174 49-386 (609)
189 KOG1188 WD40 repeat protein [G 99.7 6.4E-16 1.4E-20 163.2 16.9 267 781-1076 41-346 (376)
190 KOG1517 Guanine nucleotide bin 99.7 2.1E-15 4.6E-20 178.2 22.7 274 774-1078 1070-1383(1387)
191 KOG0642 Cell-cycle nuclear pro 99.7 4.7E-16 1E-20 174.0 13.9 260 763-1046 289-573 (577)
192 KOG0322 G-protein beta subunit 99.7 1.5E-15 3.3E-20 154.8 16.2 242 819-1075 6-322 (323)
193 KOG1007 WD repeat protein TSSC 99.7 1.4E-14 3E-19 149.5 22.3 286 860-1175 39-361 (370)
194 KOG0644 Uncharacterized conser 99.6 2.5E-16 5.5E-21 181.7 9.9 276 761-1078 183-470 (1113)
195 KOG0644 Uncharacterized conser 99.6 4.1E-16 8.9E-21 180.0 10.6 276 819-1119 182-469 (1113)
196 KOG1963 WD40 repeat protein [G 99.6 1.7E-13 3.7E-18 161.5 30.1 320 771-1119 163-539 (792)
197 KOG1587 Cytoplasmic dynein int 99.6 6.2E-14 1.3E-18 165.8 24.8 259 790-1078 224-518 (555)
198 PF03456 uDENN: uDENN domain; 99.6 4.2E-17 9.2E-22 138.2 -1.3 65 34-104 1-65 (65)
199 KOG0303 Actin-binding protein 99.6 2.7E-14 5.9E-19 153.1 19.3 203 918-1121 76-297 (472)
200 KOG1587 Cytoplasmic dynein int 99.6 9.8E-14 2.1E-18 164.1 24.4 261 903-1177 222-518 (555)
201 PRK11028 6-phosphogluconolacto 99.6 8.7E-13 1.9E-17 152.4 31.5 264 896-1175 5-304 (330)
202 KOG1334 WD40 repeat protein [G 99.6 8.7E-15 1.9E-19 160.9 13.7 288 874-1176 133-467 (559)
203 KOG2110 Uncharacterized conser 99.6 1.5E-12 3.2E-17 139.6 30.2 226 847-1078 13-250 (391)
204 KOG1334 WD40 repeat protein [G 99.6 8.8E-15 1.9E-19 160.8 13.2 286 764-1077 138-467 (559)
205 KOG1007 WD repeat protein TSSC 99.6 1E-13 2.2E-18 143.1 20.1 244 820-1076 56-361 (370)
206 KOG1524 WD40 repeat-containing 99.6 5.4E-14 1.2E-18 155.6 19.3 207 850-1072 74-282 (737)
207 KOG1524 WD40 repeat-containing 99.6 8.1E-14 1.8E-18 154.2 19.0 255 882-1171 13-282 (737)
208 KOG1310 WD40 repeat protein [G 99.5 1.4E-13 3.1E-18 152.7 16.8 210 760-998 42-307 (758)
209 KOG0290 Conserved WD40 repeat- 99.5 3.3E-13 7.2E-18 139.6 18.4 238 824-1072 93-361 (364)
210 KOG0771 Prolactin regulatory e 99.5 4E-13 8.8E-18 146.5 19.6 193 968-1175 148-354 (398)
211 KOG2110 Uncharacterized conser 99.5 3.1E-12 6.6E-17 137.2 25.7 233 924-1176 6-249 (391)
212 KOG1240 Protein kinase contain 99.5 1.2E-12 2.5E-17 158.1 23.9 268 908-1177 1034-1336(1431)
213 KOG1523 Actin-related protein 99.5 1.2E-12 2.5E-17 137.7 20.1 229 769-1025 11-269 (361)
214 PRK11028 6-phosphogluconolacto 99.5 1.7E-11 3.7E-16 141.6 31.3 266 790-1085 14-315 (330)
215 KOG4497 Uncharacterized conser 99.5 6.4E-13 1.4E-17 139.4 15.3 355 747-1168 16-425 (447)
216 PRK01742 tolB translocation pr 99.5 2.1E-12 4.6E-17 154.1 22.1 233 902-1156 183-426 (429)
217 KOG1272 WD40-repeat-containing 99.5 1.8E-13 3.9E-18 149.8 11.5 264 888-1168 136-402 (545)
218 KOG1523 Actin-related protein 99.5 4.5E-12 9.7E-17 133.4 21.1 222 821-1078 4-238 (361)
219 PRK01742 tolB translocation pr 99.5 2.2E-12 4.8E-17 154.0 21.6 228 790-1057 186-426 (429)
220 PF09794 Avl9: Transport prote 99.5 5.7E-12 1.2E-16 142.1 22.9 314 6-381 2-377 (379)
221 KOG0290 Conserved WD40 repeat- 99.4 3.2E-12 6.9E-17 132.4 17.3 239 765-1025 93-357 (364)
222 KOG2321 WD40 repeat protein [G 99.4 1.3E-11 2.8E-16 138.4 22.5 276 765-1077 48-344 (703)
223 PF02239 Cytochrom_D1: Cytochr 99.4 1.9E-10 4.1E-15 133.1 32.3 295 790-1120 18-349 (369)
224 KOG2111 Uncharacterized conser 99.4 2.7E-10 5.9E-15 120.2 30.1 278 887-1172 11-319 (346)
225 KOG2111 Uncharacterized conser 99.4 2.8E-10 6.1E-15 120.1 29.9 226 849-1078 15-258 (346)
226 PF02239 Cytochrom_D1: Cytochr 99.4 4.9E-10 1.1E-14 129.7 34.7 306 851-1177 5-349 (369)
227 KOG0771 Prolactin regulatory e 99.4 3.1E-12 6.6E-17 139.8 14.6 193 884-1077 147-355 (398)
228 TIGR03300 assembly_YfgL outer 99.4 3.9E-10 8.5E-15 132.9 32.9 296 850-1172 64-376 (377)
229 COG5354 Uncharacterized protei 99.4 2.7E-10 5.8E-15 126.9 28.8 310 768-1119 32-396 (561)
230 KOG2139 WD40 repeat protein [G 99.4 2E-10 4.2E-15 122.7 26.4 294 771-1118 101-431 (445)
231 KOG2394 WD40 protein DMR-N9 [G 99.4 3.8E-11 8.2E-16 134.0 21.4 232 849-1100 133-384 (636)
232 KOG2394 WD40 protein DMR-N9 [G 99.4 1.9E-11 4E-16 136.4 18.9 164 828-1016 220-384 (636)
233 KOG1310 WD40 repeat protein [G 99.4 4.5E-12 9.8E-17 140.9 13.8 161 916-1076 43-231 (758)
234 KOG1272 WD40-repeat-containing 99.4 1.5E-12 3.3E-17 142.6 10.0 266 771-1073 132-406 (545)
235 KOG3881 Uncharacterized conser 99.4 5.3E-11 1.2E-15 128.6 20.4 242 826-1078 54-322 (412)
236 KOG2315 Predicted translation 99.3 9.1E-10 2E-14 124.4 30.8 303 849-1176 44-391 (566)
237 KOG2321 WD40 repeat protein [G 99.3 1.4E-10 3.1E-15 130.2 24.2 273 825-1119 49-344 (703)
238 KOG1409 Uncharacterized conser 99.3 3.6E-11 7.8E-16 127.6 18.3 335 819-1176 16-395 (404)
239 PF03455 dDENN: dDENN domain; 99.3 1E-12 2.2E-17 112.6 3.1 65 364-432 1-68 (68)
240 KOG4497 Uncharacterized conser 99.3 1.1E-10 2.4E-15 122.9 18.7 302 845-1175 14-391 (447)
241 smart00801 dDENN Domain always 99.3 3.8E-12 8.2E-17 109.5 5.9 64 365-432 1-69 (69)
242 COG4946 Uncharacterized protei 99.3 1.8E-08 4E-13 111.0 34.9 215 860-1079 245-480 (668)
243 KOG2315 Predicted translation 99.3 2.5E-09 5.4E-14 120.9 29.0 308 770-1120 36-392 (566)
244 TIGR03300 assembly_YfgL outer 99.3 2.7E-09 5.9E-14 125.7 31.3 256 850-1115 104-376 (377)
245 KOG3881 Uncharacterized conser 99.3 2.2E-10 4.7E-15 124.0 19.6 237 923-1177 55-322 (412)
246 COG5354 Uncharacterized protei 99.3 2.7E-09 5.8E-14 119.1 28.4 315 826-1177 31-397 (561)
247 PRK04922 tolB translocation pr 99.3 9.5E-10 2.1E-14 131.6 27.3 210 903-1118 184-411 (433)
248 PRK03629 tolB translocation pr 99.3 8.8E-10 1.9E-14 131.4 26.8 229 790-1056 181-427 (429)
249 PRK03629 tolB translocation pr 99.3 1.6E-09 3.5E-14 129.2 29.0 231 903-1155 179-427 (429)
250 KOG1912 WD40 repeat protein [G 99.3 5.5E-10 1.2E-14 129.3 23.0 371 770-1177 17-508 (1062)
251 KOG0974 WD-repeat protein WDR6 99.2 2.4E-10 5.3E-15 137.4 19.6 222 851-1077 61-289 (967)
252 KOG2314 Translation initiation 99.2 2.7E-09 5.8E-14 119.7 25.3 309 848-1175 219-573 (698)
253 KOG0974 WD-repeat protein WDR6 99.2 6.8E-10 1.5E-14 133.6 21.3 259 894-1176 18-289 (967)
254 PRK05137 tolB translocation pr 99.2 4.8E-09 1.1E-13 125.7 29.1 213 944-1177 182-414 (435)
255 PRK04922 tolB translocation pr 99.2 2.3E-09 4.9E-14 128.4 24.7 229 790-1056 186-432 (433)
256 KOG2139 WD40 repeat protein [G 99.2 9.5E-09 2.1E-13 110.1 25.8 173 828-1016 99-290 (445)
257 KOG1354 Serine/threonine prote 99.1 2.9E-09 6.2E-14 113.2 19.6 239 828-1079 26-362 (433)
258 PRK02889 tolB translocation pr 99.1 3.8E-09 8.3E-14 126.0 23.5 202 903-1110 176-392 (427)
259 TIGR02658 TTQ_MADH_Hv methylam 99.1 1.1E-07 2.5E-12 107.5 33.8 256 903-1178 27-333 (352)
260 PRK05137 tolB translocation pr 99.1 1.6E-08 3.5E-13 121.2 28.2 210 903-1118 182-412 (435)
261 PF10282 Lactonase: Lactonase, 99.1 2.7E-07 5.8E-12 107.0 37.2 268 896-1175 2-322 (345)
262 PRK02889 tolB translocation pr 99.1 4.5E-09 9.7E-14 125.4 22.8 220 820-1057 188-425 (427)
263 KOG4547 WD40 repeat-containing 99.1 6.3E-09 1.4E-13 118.7 21.9 183 849-1035 3-221 (541)
264 COG4946 Uncharacterized protei 99.1 2.7E-07 5.8E-12 102.1 33.2 371 757-1178 67-480 (668)
265 KOG0309 Conserved WD40 repeat- 99.1 5.8E-10 1.3E-14 128.2 12.9 270 738-1035 24-340 (1081)
266 KOG0280 Uncharacterized conser 99.1 2.5E-08 5.4E-13 104.5 23.1 264 901-1177 44-335 (339)
267 PF10282 Lactonase: Lactonase, 99.1 1.3E-06 2.9E-11 101.2 40.5 265 854-1118 2-322 (345)
268 KOG4190 Uncharacterized conser 99.0 5.2E-10 1.1E-14 124.2 9.7 279 819-1114 727-1032(1034)
269 PF08662 eIF2A: Eukaryotic tra 99.0 9.4E-09 2E-13 108.2 18.9 147 968-1119 9-180 (194)
270 PF08662 eIF2A: Eukaryotic tra 99.0 1.1E-08 2.5E-13 107.6 19.3 128 1028-1175 39-179 (194)
271 KOG1064 RAVE (regulator of V-A 99.0 2.8E-09 6.1E-14 133.3 14.7 195 824-1043 2205-2407(2439)
272 KOG2041 WD40 repeat protein [G 99.0 2.3E-08 5E-13 114.8 20.2 273 828-1118 15-337 (1189)
273 KOG4547 WD40 repeat-containing 99.0 1E-07 2.2E-12 109.0 25.1 185 891-1077 3-221 (541)
274 KOG1064 RAVE (regulator of V-A 99.0 2.6E-09 5.7E-14 133.6 13.2 187 921-1120 2206-2400(2439)
275 TIGR02800 propeller_TolB tol-p 99.0 1E-07 2.2E-12 114.1 26.9 202 903-1110 170-386 (417)
276 PRK11138 outer membrane biogen 99.0 4E-07 8.7E-12 107.8 31.1 301 851-1174 69-393 (394)
277 KOG0280 Uncharacterized conser 99.0 5.5E-08 1.2E-12 101.9 20.3 241 826-1078 68-335 (339)
278 KOG1912 WD40 repeat protein [G 99.0 1.1E-07 2.4E-12 110.7 24.3 375 758-1176 44-552 (1062)
279 KOG2041 WD40 repeat protein [G 98.9 2.5E-07 5.3E-12 106.6 26.1 290 768-1078 14-339 (1189)
280 PRK00178 tolB translocation pr 98.9 2.4E-07 5.2E-12 111.2 28.1 209 904-1118 180-406 (430)
281 KOG1409 Uncharacterized conser 98.9 1.6E-08 3.6E-13 107.8 15.5 245 915-1176 16-271 (404)
282 KOG2314 Translation initiation 98.9 2.2E-07 4.9E-12 104.7 24.9 307 774-1119 216-574 (698)
283 PRK00178 tolB translocation pr 98.9 1.6E-07 3.6E-12 112.6 26.2 218 821-1056 192-427 (430)
284 KOG4190 Uncharacterized conser 98.9 5.2E-09 1.1E-13 116.5 12.0 283 875-1171 727-1032(1034)
285 PRK04792 tolB translocation pr 98.9 1.5E-07 3.3E-12 112.8 24.8 220 821-1056 211-446 (448)
286 PRK11138 outer membrane biogen 98.9 7.3E-07 1.6E-11 105.6 30.3 257 851-1117 120-393 (394)
287 TIGR02800 propeller_TolB tol-p 98.9 2E-07 4.3E-12 111.6 25.6 216 821-1054 183-416 (417)
288 PF04762 IKI3: IKI3 family; I 98.9 4.6E-06 1E-10 107.0 38.1 326 825-1176 73-457 (928)
289 PF13360 PQQ_2: PQQ-like domai 98.9 1.1E-06 2.3E-11 96.3 28.3 213 901-1120 1-232 (238)
290 PRK04792 tolB translocation pr 98.9 6.4E-07 1.4E-11 107.4 27.6 209 904-1118 199-425 (448)
291 KOG0309 Conserved WD40 repeat- 98.8 2.7E-08 5.9E-13 114.8 14.0 279 827-1119 24-340 (1081)
292 TIGR02658 TTQ_MADH_Hv methylam 98.8 1.1E-05 2.5E-10 91.5 34.8 230 849-1086 55-338 (352)
293 PF04762 IKI3: IKI3 family; I 98.8 4.8E-06 1E-10 106.9 35.8 217 847-1078 217-458 (928)
294 PF13360 PQQ_2: PQQ-like domai 98.8 1.3E-06 2.8E-11 95.7 26.8 215 860-1079 2-233 (238)
295 PLN02919 haloacid dehalogenase 98.8 2.1E-06 4.7E-11 112.2 32.7 246 927-1177 571-890 (1057)
296 PRK01029 tolB translocation pr 98.8 4.5E-07 9.8E-12 107.8 24.3 214 768-1015 184-423 (428)
297 KOG1354 Serine/threonine prote 98.8 1.2E-07 2.7E-12 101.0 16.7 229 889-1120 33-361 (433)
298 KOG4649 PQQ (pyrrolo-quinoline 98.7 1.7E-05 3.7E-10 82.1 28.2 307 851-1177 23-353 (354)
299 PRK01029 tolB translocation pr 98.7 2.9E-06 6.4E-11 100.9 26.2 221 823-1058 180-426 (428)
300 COG2706 3-carboxymuconate cycl 98.7 3.3E-05 7.1E-10 84.4 31.3 263 902-1175 15-321 (346)
301 KOG3823 Uncharacterized conser 98.7 1E-06 2.2E-11 96.6 18.6 346 34-431 24-430 (630)
302 KOG4532 WD40-like repeat conta 98.7 3E-06 6.5E-11 87.9 20.5 222 858-1079 49-285 (344)
303 COG2706 3-carboxymuconate cycl 98.6 0.00017 3.6E-09 79.0 33.7 260 860-1120 15-323 (346)
304 PF15492 Nbas_N: Neuroblastoma 98.6 3E-05 6.6E-10 82.3 27.0 218 930-1176 4-260 (282)
305 PLN02919 haloacid dehalogenase 98.6 4.2E-05 9.2E-10 100.2 34.1 227 850-1080 579-892 (1057)
306 KOG4714 Nucleoporin [Nuclear s 98.5 9.1E-07 2E-11 91.4 13.0 185 893-1077 47-255 (319)
307 KOG0882 Cyclophilin-related pe 98.5 5.6E-06 1.2E-10 91.6 18.0 274 825-1115 7-369 (558)
308 KOG4714 Nucleoporin [Nuclear s 98.5 6.9E-07 1.5E-11 92.2 9.8 183 849-1032 99-316 (319)
309 KOG4532 WD40-like repeat conta 98.5 2.1E-05 4.7E-10 81.7 20.5 228 849-1078 82-333 (344)
310 KOG3914 WD repeat protein WDR4 98.4 5E-06 1.1E-10 91.4 16.4 152 890-1043 71-232 (390)
311 PF15492 Nbas_N: Neuroblastoma 98.4 0.00011 2.3E-09 78.2 25.3 219 848-1078 6-261 (282)
312 cd00216 PQQ_DH Dehydrogenases 98.4 0.00027 5.9E-09 85.9 32.0 262 851-1120 61-426 (488)
313 KOG1275 PAB-dependent poly(A) 98.4 5.4E-06 1.2E-10 98.9 16.1 180 933-1116 146-340 (1118)
314 KOG2066 Vacuolar assembly/sort 98.4 2E-05 4.4E-10 93.4 19.6 179 888-1078 44-235 (846)
315 PRK04043 tolB translocation pr 98.3 7.9E-05 1.7E-09 88.2 24.0 200 753-995 175-401 (419)
316 PRK04043 tolB translocation pr 98.3 0.0002 4.4E-09 84.8 27.3 208 944-1175 169-400 (419)
317 KOG2695 WD40 repeat protein [G 98.3 1.2E-06 2.6E-11 93.8 7.4 151 890-1044 222-386 (425)
318 cd00216 PQQ_DH Dehydrogenases 98.3 0.0005 1.1E-08 83.6 30.9 270 893-1178 61-427 (488)
319 COG5170 CDC55 Serine/threonine 98.3 1.1E-05 2.5E-10 85.1 14.1 230 885-1117 28-366 (460)
320 KOG4649 PQQ (pyrrolo-quinoline 98.3 0.0012 2.5E-08 69.0 27.9 257 851-1119 63-352 (354)
321 KOG3914 WD repeat protein WDR4 98.3 7.6E-06 1.7E-10 90.0 12.8 152 967-1122 65-227 (390)
322 COG5170 CDC55 Serine/threonine 98.3 1.7E-05 3.8E-10 83.7 14.8 208 963-1177 25-311 (460)
323 PF00400 WD40: WD domain, G-be 98.3 1.9E-06 4.1E-11 64.8 5.8 39 1135-1173 1-39 (39)
324 KOG1275 PAB-dependent poly(A) 98.2 1.6E-05 3.5E-10 95.0 15.8 180 891-1074 145-340 (1118)
325 KOG2695 WD40 repeat protein [G 98.2 3.3E-06 7.2E-11 90.5 8.4 142 938-1082 228-382 (425)
326 PF08450 SGL: SMP-30/Gluconola 98.2 0.0026 5.5E-08 70.1 31.6 214 928-1164 4-244 (246)
327 KOG0882 Cyclophilin-related pe 98.2 2.5E-05 5.4E-10 86.6 14.4 245 769-1042 9-313 (558)
328 KOG2114 Vacuolar assembly/sort 98.2 0.00022 4.8E-09 85.5 22.8 205 885-1093 27-259 (933)
329 KOG1920 IkappaB kinase complex 98.2 0.00014 3E-09 90.2 21.5 237 923-1176 68-323 (1265)
330 PF08450 SGL: SMP-30/Gluconola 98.1 0.0035 7.5E-08 69.1 30.9 209 889-1106 7-243 (246)
331 PF07433 DUF1513: Protein of u 98.1 0.0015 3.3E-08 71.8 26.6 189 889-1079 12-250 (305)
332 KOG1832 HIV-1 Vpr-binding prot 98.1 2.3E-06 5E-11 101.0 3.4 215 819-1063 1093-1318(1516)
333 KOG1645 RING-finger-containing 98.0 0.00017 3.7E-09 79.3 17.4 252 905-1176 175-462 (463)
334 PF00400 WD40: WD domain, G-be 98.0 1.3E-05 2.9E-10 60.1 6.3 39 1036-1074 1-39 (39)
335 KOG1920 IkappaB kinase complex 98.0 0.0037 8E-08 78.1 30.3 275 826-1117 67-364 (1265)
336 PF06433 Me-amine-dh_H: Methyl 98.0 0.015 3.2E-07 65.0 32.2 257 903-1178 17-323 (342)
337 KOG2114 Vacuolar assembly/sort 98.0 0.00058 1.3E-08 82.0 21.9 196 849-1048 33-258 (933)
338 KOG2066 Vacuolar assembly/sort 98.0 0.00055 1.2E-08 81.7 21.1 177 925-1118 41-233 (846)
339 KOG3621 WD40 repeat-containing 98.0 0.00061 1.3E-08 80.4 21.0 150 885-1035 37-198 (726)
340 PF07433 DUF1513: Protein of u 98.0 0.0046 1E-07 68.1 26.6 213 850-1070 16-279 (305)
341 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.0 0.0098 2.1E-07 72.7 32.6 148 892-1039 119-338 (527)
342 PF08616 SPA: Stabilization of 97.9 3.8E-05 8.2E-10 72.5 8.8 104 206-311 3-112 (113)
343 KOG1832 HIV-1 Vpr-binding prot 97.9 4.5E-06 9.8E-11 98.6 3.1 194 766-1003 1099-1300(1516)
344 KOG3617 WD40 and TPR repeat-co 97.8 0.00051 1.1E-08 81.5 16.0 277 884-1173 18-331 (1416)
345 PF04841 Vps16_N: Vps16, N-ter 97.7 0.016 3.5E-07 68.5 28.0 167 904-1078 62-248 (410)
346 KOG3617 WD40 and TPR repeat-co 97.7 0.0013 2.9E-08 78.1 17.7 299 847-1163 23-373 (1416)
347 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.7 0.043 9.2E-07 67.2 31.4 187 893-1080 69-337 (527)
348 PF04053 Coatomer_WDAD: Coatom 97.6 0.011 2.3E-07 70.1 25.0 229 819-1077 24-263 (443)
349 PF14583 Pectate_lyase22: Olig 97.6 0.049 1.1E-06 62.0 28.6 279 888-1175 42-381 (386)
350 PF06433 Me-amine-dh_H: Methyl 97.6 0.13 2.8E-06 57.6 31.3 233 849-1086 45-328 (342)
351 KOG1645 RING-finger-containing 97.6 0.00088 1.9E-08 73.9 14.2 236 763-1034 188-461 (463)
352 KOG3621 WD40 repeat-containing 97.6 0.0052 1.1E-07 72.8 20.9 269 771-1077 36-354 (726)
353 KOG2432 Uncharacterized conser 97.5 0.0025 5.4E-08 71.1 15.6 186 91-288 106-318 (565)
354 PF11768 DUF3312: Protein of u 97.5 0.046 9.9E-07 64.3 26.5 111 1049-1176 208-330 (545)
355 PHA02713 hypothetical protein; 97.5 0.004 8.7E-08 76.8 19.3 188 975-1178 303-536 (557)
356 PF00930 DPPIV_N: Dipeptidyl p 97.5 0.04 8.6E-07 64.2 26.5 285 777-1107 1-346 (353)
357 PRK02888 nitrous-oxide reducta 97.4 0.011 2.3E-07 71.1 21.2 223 891-1119 139-405 (635)
358 KOG2080 Uncharacterized conser 97.4 0.00018 3.8E-09 85.1 5.4 133 187-320 34-166 (1295)
359 PF08596 Lgl_C: Lethal giant l 97.4 0.11 2.3E-06 61.0 28.0 265 829-1117 3-334 (395)
360 PF04053 Coatomer_WDAD: Coatom 97.3 0.06 1.3E-06 63.9 25.6 235 919-1175 28-262 (443)
361 PF00930 DPPIV_N: Dipeptidyl p 97.3 0.053 1.1E-06 63.2 24.8 257 890-1164 1-346 (353)
362 PRK02888 nitrous-oxide reducta 97.3 0.061 1.3E-06 64.8 25.0 204 848-1065 201-450 (635)
363 PHA02713 hypothetical protein; 97.3 0.017 3.7E-07 71.3 21.5 216 904-1120 273-535 (557)
364 PF11768 DUF3312: Protein of u 97.3 0.68 1.5E-05 54.8 32.4 110 1044-1156 257-368 (545)
365 PF04841 Vps16_N: Vps16, N-ter 97.3 0.091 2E-06 62.3 26.3 140 934-1094 190-330 (410)
366 PF14583 Pectate_lyase22: Olig 97.2 0.64 1.4E-05 53.2 32.8 289 819-1117 22-380 (386)
367 PF00780 CNH: CNH domain; Int 97.2 0.26 5.5E-06 55.2 28.4 224 849-1089 5-266 (275)
368 PF03178 CPSF_A: CPSF A subuni 97.2 0.082 1.8E-06 60.7 24.7 218 944-1171 2-261 (321)
369 KOG4441 Proteins containing BT 97.2 0.025 5.4E-07 69.7 21.1 217 944-1177 301-548 (571)
370 PF00780 CNH: CNH domain; Int 97.1 0.18 3.9E-06 56.4 26.2 220 890-1120 4-257 (275)
371 PF03178 CPSF_A: CPSF A subuni 97.1 0.29 6.4E-06 56.2 28.3 209 903-1115 2-262 (321)
372 KOG4441 Proteins containing BT 97.1 0.046 1E-06 67.4 21.8 213 903-1118 301-546 (571)
373 PF02897 Peptidase_S9_N: Proly 97.0 0.43 9.4E-06 57.0 29.3 234 773-1038 128-408 (414)
374 PF14783 BBS2_Mid: Ciliary BBS 96.9 0.057 1.2E-06 50.2 15.3 102 830-948 2-110 (111)
375 PF08553 VID27: VID27 cytoplas 96.8 0.021 4.6E-07 71.2 16.3 140 975-1118 492-647 (794)
376 PF08553 VID27: VID27 cytoplas 96.7 0.024 5.2E-07 70.7 15.7 133 942-1075 502-646 (794)
377 COG3391 Uncharacterized conser 96.7 1.9 4.1E-05 50.8 31.4 255 905-1177 13-285 (381)
378 KOG1008 Uncharacterized conser 96.7 0.00051 1.1E-08 79.8 1.0 182 892-1076 69-275 (783)
379 PF02897 Peptidase_S9_N: Proly 96.7 1.8 3.9E-05 51.6 31.4 235 848-1084 132-412 (414)
380 KOG1008 Uncharacterized conser 96.6 0.0008 1.7E-08 78.3 1.8 196 965-1175 57-275 (783)
381 PF14655 RAB3GAP2_N: Rab3 GTPa 96.6 1.2 2.6E-05 52.2 27.2 81 964-1044 307-408 (415)
382 smart00320 WD40 WD40 repeats. 96.6 0.0039 8.4E-08 45.0 4.6 38 1136-1173 3-40 (40)
383 PF08596 Lgl_C: Lethal giant l 96.5 0.51 1.1E-05 55.4 24.0 221 770-1005 3-301 (395)
384 TIGR03074 PQQ_membr_DH membran 96.5 0.41 8.9E-06 60.7 24.6 224 893-1122 194-481 (764)
385 KOG1897 Damage-specific DNA bi 96.5 3.9 8.4E-05 51.4 34.6 317 826-1172 529-895 (1096)
386 PF06977 SdiA-regulated: SdiA- 96.5 1.1 2.4E-05 48.8 24.8 193 878-1073 16-247 (248)
387 PF05096 Glu_cyclase_2: Glutam 96.4 1.8 4E-05 47.1 26.6 173 890-1065 53-249 (264)
388 COG3386 Gluconolactonase [Carb 96.4 0.58 1.3E-05 52.8 22.8 211 849-1065 34-274 (307)
389 PHA03098 kelch-like protein; P 96.4 0.2 4.4E-06 62.0 20.9 185 933-1119 294-512 (534)
390 COG3391 Uncharacterized conser 96.3 2.6 5.6E-05 49.6 28.5 189 888-1078 80-285 (381)
391 COG0823 TolB Periplasmic compo 96.3 0.22 4.9E-06 58.9 19.4 171 945-1118 174-358 (425)
392 smart00320 WD40 WD40 repeats. 96.2 0.011 2.3E-07 42.6 5.2 39 1036-1074 2-40 (40)
393 PF06977 SdiA-regulated: SdiA- 96.1 1.8 3.9E-05 47.3 23.6 194 821-1030 15-246 (248)
394 PF05096 Glu_cyclase_2: Glutam 96.1 0.77 1.7E-05 49.9 20.3 200 956-1164 35-249 (264)
395 COG0823 TolB Periplasmic compo 96.1 0.18 4E-06 59.6 17.2 181 769-984 193-389 (425)
396 KOG2395 Protein involved in va 96.0 0.17 3.6E-06 58.6 15.7 139 1018-1173 348-498 (644)
397 KOG2079 Vacuolar assembly/sort 96.0 0.078 1.7E-06 66.0 13.9 98 934-1033 99-202 (1206)
398 PHA03098 kelch-like protein; P 96.0 0.18 4E-06 62.4 18.0 174 987-1177 312-513 (534)
399 PF14783 BBS2_Mid: Ciliary BBS 96.0 0.24 5.3E-06 46.1 14.0 99 967-1071 2-109 (111)
400 KOG2444 WD40 repeat protein [G 96.0 0.0073 1.6E-07 62.6 4.5 138 937-1077 33-178 (238)
401 TIGR03074 PQQ_membr_DH membran 96.0 1.2 2.7E-05 56.5 24.8 109 934-1043 194-353 (764)
402 COG5276 Uncharacterized conser 95.9 3.4 7.4E-05 44.9 28.6 270 827-1117 86-368 (370)
403 COG5276 Uncharacterized conser 95.8 3.7 7.9E-05 44.7 30.9 269 888-1175 91-369 (370)
404 COG3386 Gluconolactonase [Carb 95.8 1.4 3E-05 49.8 22.0 128 888-1016 117-264 (307)
405 KOG2395 Protein involved in va 95.8 0.11 2.4E-06 60.0 13.0 138 937-1076 349-500 (644)
406 PHA02790 Kelch-like protein; P 95.6 0.42 9.2E-06 58.1 18.3 171 987-1177 288-472 (480)
407 KOG2079 Vacuolar assembly/sort 95.6 0.09 1.9E-06 65.5 12.0 98 851-951 99-202 (1206)
408 KOG2444 WD40 repeat protein [G 95.6 0.026 5.5E-07 58.7 6.3 138 854-993 33-176 (238)
409 PF14655 RAB3GAP2_N: Rab3 GTPa 95.5 6.9 0.00015 46.0 26.8 89 885-974 5-118 (415)
410 KOG4640 Anaphase-promoting com 95.5 0.068 1.5E-06 63.0 10.2 93 923-1016 20-115 (665)
411 PHA02790 Kelch-like protein; P 95.5 0.37 8E-06 58.6 17.3 169 945-1118 288-470 (480)
412 KOG1897 Damage-specific DNA bi 95.4 11 0.00025 47.4 33.5 221 945-1171 751-1000(1096)
413 COG3490 Uncharacterized protei 95.2 3.6 7.8E-05 44.5 20.7 218 851-1074 80-346 (366)
414 COG3490 Uncharacterized protei 95.1 1.8 3.9E-05 46.8 18.1 227 774-1032 73-346 (366)
415 PRK13616 lipoprotein LpqB; Pro 95.0 1.1 2.4E-05 55.5 19.4 185 828-1030 350-564 (591)
416 PF05694 SBP56: 56kDa selenium 95.0 9.5 0.00021 44.4 26.3 216 892-1107 86-392 (461)
417 KOG4640 Anaphase-promoting com 94.8 0.11 2.4E-06 61.3 9.2 92 964-1056 20-115 (665)
418 PRK10115 protease 2; Provision 94.6 19 0.00041 45.9 31.7 234 769-1037 127-397 (686)
419 KOG4499 Ca2+-binding protein R 94.5 3.5 7.7E-05 43.3 18.1 127 888-1017 115-264 (310)
420 PLN02153 epithiospecifier prot 94.5 9.5 0.00021 44.1 24.6 172 933-1108 32-260 (341)
421 PF14727 PHTB1_N: PTHB1 N-term 94.3 15 0.00032 43.4 29.7 261 849-1119 35-361 (418)
422 PRK13616 lipoprotein LpqB; Pro 94.3 2.5 5.3E-05 52.5 19.8 180 924-1112 350-562 (591)
423 COG3204 Uncharacterized protei 94.2 5.5 0.00012 43.6 19.4 179 863-1042 65-270 (316)
424 PF05694 SBP56: 56kDa selenium 94.1 9.6 0.00021 44.3 22.3 146 849-996 139-344 (461)
425 KOG4499 Ca2+-binding protein R 94.0 9.4 0.0002 40.3 20.0 203 893-1101 27-264 (310)
426 COG1520 FOG: WD40-like repeat 93.8 15 0.00032 43.1 24.8 186 893-1079 68-271 (370)
427 PRK13684 Ycf48-like protein; P 93.8 16 0.00035 42.1 29.5 150 964-1117 172-330 (334)
428 PF14870 PSII_BNR: Photosynthe 93.7 15 0.00033 41.4 32.2 270 767-1073 15-301 (302)
429 PF14870 PSII_BNR: Photosynthe 93.5 16 0.00035 41.1 32.1 187 888-1078 66-262 (302)
430 COG3204 Uncharacterized protei 93.4 9.8 0.00021 41.7 19.6 159 961-1119 82-264 (316)
431 PLN02153 epithiospecifier prot 93.2 11 0.00025 43.5 22.1 187 850-1038 32-288 (341)
432 PLN02193 nitrile-specifier pro 92.7 21 0.00045 43.3 24.2 191 891-1084 174-418 (470)
433 PLN02193 nitrile-specifier pro 92.6 21 0.00046 43.3 24.0 186 933-1120 175-412 (470)
434 PF07792 Afi1: Docking domain 92.5 0.2 4.4E-06 49.4 5.3 115 5-145 2-142 (145)
435 KOG2280 Vacuolar assembly/sort 92.3 5.8 0.00013 48.5 17.7 178 903-1085 64-255 (829)
436 COG1520 FOG: WD40-like repeat 92.2 28 0.00061 40.7 29.6 152 892-1045 111-279 (370)
437 TIGR03548 mutarot_permut cycli 92.2 14 0.00031 42.2 21.1 134 975-1109 72-233 (323)
438 PF12894 Apc4_WD40: Anaphase-p 92.2 0.41 8.9E-06 37.4 5.5 31 1145-1175 11-41 (47)
439 TIGR03547 muta_rot_YjhT mutatr 92.1 14 0.0003 42.8 21.0 181 929-1109 59-331 (346)
440 PRK14131 N-acetylneuraminic ac 91.6 12 0.00025 44.1 19.7 40 1070-1109 314-353 (376)
441 KOG1916 Nuclear protein, conta 91.4 0.094 2E-06 63.9 1.8 208 822-1076 127-374 (1283)
442 PRK13684 Ycf48-like protein; P 91.1 34 0.00073 39.4 29.8 149 923-1074 172-329 (334)
443 TIGR03548 mutarot_permut cycli 91.0 11 0.00024 43.1 18.5 109 1010-1119 67-195 (323)
444 KOG2280 Vacuolar assembly/sort 90.6 8.1 0.00018 47.3 16.6 54 964-1017 216-270 (829)
445 PF12894 Apc4_WD40: Anaphase-p 90.6 0.79 1.7E-05 35.8 5.6 34 964-998 11-44 (47)
446 PF10647 Gmad1: Lipoprotein Lp 90.5 15 0.00032 40.5 17.9 153 1008-1167 25-187 (253)
447 PF12234 Rav1p_C: RAVE protein 90.4 6.3 0.00014 48.6 16.0 117 1048-1173 31-154 (631)
448 PF14727 PHTB1_N: PTHB1 N-term 90.4 44 0.00096 39.5 31.7 259 892-1172 36-357 (418)
449 COG3292 Predicted periplasmic 90.3 27 0.00059 41.7 19.9 302 851-1174 175-490 (671)
450 PRK10115 protease 2; Provision 90.3 64 0.0014 41.2 34.2 231 849-1083 136-401 (686)
451 COG3823 Glutamine cyclotransfe 90.3 7.6 0.00016 40.3 13.7 171 891-1064 54-247 (262)
452 TIGR03547 muta_rot_YjhT mutatr 90.3 30 0.00065 40.0 21.3 55 889-943 60-128 (346)
453 KOG2377 Uncharacterized conser 90.2 39 0.00085 39.2 20.5 152 926-1078 25-187 (657)
454 COG3823 Glutamine cyclotransfe 90.1 3.7 8E-05 42.5 11.3 122 859-983 109-247 (262)
455 PRK14131 N-acetylneuraminic ac 89.5 46 0.00099 39.1 22.2 94 850-943 38-149 (376)
456 KOG1916 Nuclear protein, conta 89.0 0.23 5E-06 60.7 2.3 161 770-951 185-373 (1283)
457 KOG3630 Nuclear pore complex, 88.7 4.8 0.0001 51.3 13.1 112 965-1076 101-228 (1405)
458 PF15390 DUF4613: Domain of un 87.7 7 0.00015 46.6 13.1 148 1006-1174 19-185 (671)
459 COG5167 VID27 Protein involved 87.2 6.8 0.00015 45.6 12.2 135 939-1076 485-632 (776)
460 PF12234 Rav1p_C: RAVE protein 86.7 17 0.00037 44.9 16.2 102 890-993 38-155 (631)
461 COG3292 Predicted periplasmic 86.7 81 0.0018 37.9 23.4 314 763-1119 159-492 (671)
462 PF07995 GSDH: Glucose / Sorbo 86.3 40 0.00088 38.7 18.6 61 1099-1170 270-330 (331)
463 PF07995 GSDH: Glucose / Sorbo 86.3 57 0.0012 37.5 19.9 54 1018-1071 273-330 (331)
464 PF09804 DUF2347: Uncharacteri 85.4 16 0.00035 40.6 14.0 34 205-239 162-195 (280)
465 smart00036 CNH Domain found in 85.4 72 0.0016 36.2 25.9 262 770-1064 2-300 (302)
466 PF10168 Nup88: Nuclear pore c 85.3 1.2E+02 0.0026 38.7 23.7 74 963-1036 83-181 (717)
467 PF08728 CRT10: CRT10; InterP 85.3 25 0.00054 43.9 16.7 147 884-1033 41-245 (717)
468 PF10168 Nup88: Nuclear pore c 84.9 26 0.00057 44.5 17.2 93 767-869 83-179 (717)
469 COG5167 VID27 Protein involved 84.4 10 0.00022 44.3 11.7 138 1018-1174 482-631 (776)
470 PRK05560 DNA gyrase subunit A; 84.3 1.4E+02 0.0031 38.7 28.7 187 931-1118 545-772 (805)
471 TIGR03118 PEPCTERM_chp_1 conse 84.2 75 0.0016 35.4 21.4 221 772-1006 26-291 (336)
472 KOG1898 Splicing factor 3b, su 83.7 1.5E+02 0.0032 38.4 33.2 106 1053-1174 940-1047(1205)
473 PF10313 DUF2415: Uncharacteri 82.7 3.5 7.7E-05 31.3 5.0 32 1146-1177 1-35 (43)
474 KOG3630 Nuclear pore complex, 82.2 13 0.00029 47.5 12.6 128 889-1017 108-254 (1405)
475 KOG1983 Tomosyn and related SN 81.9 37 0.0008 44.9 17.4 225 882-1122 36-268 (993)
476 PF07569 Hira: TUP1-like enhan 81.5 11 0.00024 40.4 10.6 73 1008-1081 14-100 (219)
477 KOG2063 Vacuolar assembly/sort 80.8 35 0.00077 43.7 15.9 228 888-1120 21-270 (877)
478 PF08801 Nucleoporin_N: Nup133 80.6 48 0.001 39.6 16.8 32 1047-1078 190-221 (422)
479 PF10647 Gmad1: Lipoprotein Lp 80.3 98 0.0021 34.0 22.5 141 925-1068 25-187 (253)
480 TIGR03118 PEPCTERM_chp_1 conse 79.3 1.1E+02 0.0024 34.1 23.7 197 888-1087 29-288 (336)
481 KOG2247 WD40 repeat-containing 78.8 1.9 4E-05 50.0 3.6 231 773-1038 39-284 (615)
482 TIGR02604 Piru_Ver_Nterm putat 78.6 55 0.0012 38.2 16.1 141 965-1107 14-202 (367)
483 KOG1983 Tomosyn and related SN 78.5 23 0.00051 46.7 14.0 71 1005-1080 197-268 (993)
484 PF14781 BBS2_N: Ciliary BBSom 78.0 71 0.0015 31.2 13.3 106 969-1078 3-127 (136)
485 PF07569 Hira: TUP1-like enhan 77.8 13 0.00028 39.9 9.6 78 1092-1175 14-95 (219)
486 KOG1900 Nuclear pore complex, 77.3 22 0.00047 46.6 12.5 150 1023-1176 96-273 (1311)
487 PF08728 CRT10: CRT10; InterP 77.3 48 0.001 41.6 15.2 102 849-951 112-245 (717)
488 COG4590 ABC-type uncharacteriz 76.9 1.1E+02 0.0023 35.7 16.4 251 867-1120 54-388 (733)
489 PF12657 TFIIIC_delta: Transcr 76.5 9.8 0.00021 39.2 8.0 35 828-869 86-121 (173)
490 PF10313 DUF2415: Uncharacteri 76.3 10 0.00022 29.0 5.6 32 965-996 1-35 (43)
491 KOG2247 WD40 repeat-containing 75.1 0.35 7.6E-06 55.6 -3.3 141 888-1030 41-184 (615)
492 PF03022 MRJP: Major royal jel 74.9 1.5E+02 0.0033 33.3 24.3 168 987-1164 35-254 (287)
493 TIGR03606 non_repeat_PQQ dehyd 74.0 2E+02 0.0044 34.4 19.4 175 956-1162 21-246 (454)
494 KOG3616 Selective LIM binding 73.9 44 0.00095 40.9 13.0 269 830-1118 17-405 (1636)
495 PF11635 Med16: Mediator compl 73.3 2.7E+02 0.0058 36.1 21.3 79 1091-1170 260-345 (753)
496 KOG2714 SETA binding protein S 72.8 59 0.0013 37.7 13.2 198 893-1119 235-460 (465)
497 PF10433 MMS1_N: Mono-function 72.5 2.4E+02 0.0052 34.6 25.9 222 891-1120 220-478 (504)
498 PF02333 Phytase: Phytase; In 72.0 2E+02 0.0044 33.5 23.7 182 849-1035 66-291 (381)
499 PF08801 Nucleoporin_N: Nup133 71.7 56 0.0012 39.0 14.1 32 964-995 189-220 (422)
500 KOG4659 Uncharacterized conser 71.6 3.5E+02 0.0076 36.1 27.8 78 878-958 342-433 (1899)
No 1
>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]
Probab=100.00 E-value=1.7e-82 Score=723.70 Aligned_cols=606 Identities=20% Similarity=0.209 Sum_probs=497.4
Q ss_pred CCcceEEEEEeccCCCcccCCCCCCCCCCccccccccccccccCCCCCCCCCCCCCCcccCCCceEEeecCCCCCCCCCC
Q 001042 1 MARVFEYFVVCGIGPEIRTLDGSKGYHGPEYYYLSSVLDQFPPLNHSLYTPPPPQLSTCVLPAGVQFYSSGFDSDDPSTF 80 (1178)
Q Consensus 1 ~~rl~dyfvvvG~~~~~~~~~~~~~~~~~~~~~~p~vl~~yP~~~~~~~~~~~~~v~~fc~P~g~~~~~~~~~~~~~~~~ 80 (1178)
|.|+.|||+++|+|......-.+.+ +..-.|.|+.++|+.++++.+ +-..|..||-|.| |..+...+.
T Consensus 1 m~~~~~~~~~~~~dt~~~~~~~~~~----~e~~~~~v~~~~~~~~~~d~~-~~~~i~~f~~p~g-------w~~~~~~~~ 68 (1732)
T KOG1090|consen 1 MRDPDKVKSGPICDTVAVIVLEESD----DENALPDVLHEVQSPHTSDNI-PTSSIKKFARPRG-------WYNQSVSSP 68 (1732)
T ss_pred CCChhhccccccccchhhhhhhhcC----CCcchhHHHhhcCCCCCCCCC-chhhHHHHhcccc-------chhhcccCc
Confidence 8999999999999987654321111 122389999999999999876 5688999999987 566777888
Q ss_pred CceeEEEEEcCCCCeEEEEEEEecCCCCHHHHHhccCCCCccCCeEEEEEcCCChHHHHHHHHHHHHHHhhccCCCCccH
Q 001042 81 PRTYPIVLTEGDGSKIYVSCISFRDPVSEDIAEAYRIPANSFADKCICLVSRSPSFRILRNALEEIYSLCFLSDGSSKPL 160 (1178)
Q Consensus 81 p~~f~fvlT~~~g~~~Yg~cl~f~e~~~~~~~~~~~~~~~~~~~~~icllS~~p~~~~f~~~L~~i~~~~~~~~~~~~~~ 160 (1178)
|+||+-|||+++|+|.||+||.|||.... ...|+++||+|||+.-+..+|+++|..||+... .+.....
T Consensus 69 ~~ff~~ilt~~~~~r~~~~~ls~~e~~~~---------t~~~~~~~ivlis~~~~~~~fk~~l~~i~~~~~--~~~~~~~ 137 (1732)
T KOG1090|consen 69 SEFFYQILTTERGTRRIAYVLSTWEEDEK---------TLNFKAVSIVLISQNFHPKAFKEILLEISNDLR--TPEFSSS 137 (1732)
T ss_pred chhhhhheecccCceeEEEEeehhhhhhh---------hhcccceEEEEEecccCHHHHHHHHHHHHHHhc--CcccccH
Confidence 99999999999999999999999988544 335999999999999999999999999999766 3456778
Q ss_pred HHHHHhhcccCCCCCCCCceEEeeeccceeEEeCCCCCCCCCCCcchHHHhccCChhhHHHHHHHHhccccEEEEeCCcc
Q 001042 161 WDVISHLVSNVPLPTPGKNRVLFAIENCLLSVEAPPKEGLPHADISFQPLVQLLDVDNLITLFTAVLLERRILLRSNKYS 240 (1178)
Q Consensus 161 ~~~i~~~l~~~p~P~~g~~~~~~~~~~~~~~~~~p~~~~lp~~~~~~~~l~~~l~~~~~l~l~~~~L~E~~il~~s~~~~ 240 (1178)
+.+|.++.+++..|..+.+.+.+.++-..-.-..| .+|.++-.+..||+.||+.|++.|+.++|.|.||+|.|+++.
T Consensus 138 ~~li~~l~~~l~~~~s~~~~~~~tl~~~~~~~l~p---~~p~tg~~v~~lfk~lg~qnvi~ii~a~lsd~ri~~~s~~~~ 214 (1732)
T KOG1090|consen 138 SELIRFLTYELVEEGSTIEIRTKTLHVELGFELIP---ISPVTGKDVAMLFKMLGFQNVIKIIHALLSDCRIVLASSSLM 214 (1732)
T ss_pred HHHHHHhheEEeecCCCCceEEEEeecccCceeee---cCCCCCccHHHHHHHhhhhHHHHHHHHHHhcceEeeehhHHH
Confidence 89999999999899999888888874322111123 678899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcccccCCCceeecccchhhhhhccCCcceEEeecCCCCccccCCCcEEEEEcCCCeeeCCC--CCCCCC
Q 001042 241 LLTLVSEAICHLIYPFRWQHVYIPLLFFSGVDYIDAPTPYMMGLHSGVDTSNLAMDGVVVVDLEYNRICTTE--EIPPIP 318 (1178)
Q Consensus 241 ~ls~~~~al~~ll~Pf~w~~~~IP~lP~~l~~~l~aP~P~iiGv~~~~~~~~~~~~~~~~vdlD~~~i~~~~--~~~~lP 318 (1178)
.|+.|+.|+++|||||+|.|.||||||.+|.++|++||||||||++++.....+ |+++||||+|.|..|+ +++.+|
T Consensus 215 ~ls~~~~ai~sllypf~y~h~~v~ilp~~l~evl~sptpfl~gv~s~~~t~~~d--e~ivv~ld~g~v~vpd~~~i~~~~ 292 (1732)
T KOG1090|consen 215 RLSRCQNAILSLLYPFEYVHSCVTILPDSLAEVLESPTPFLIGVLSEFVTSFGD--ENIVVYLDNGEVHVPDHAEIYKSD 292 (1732)
T ss_pred HHHHHHHHHHHHhcchheeeeeeeecccHHHHHhcCCCceeehhhHHHhhhcCC--ceEEEEecCCEEecCCceeeecCC
Confidence 999999999999999999999999999999999999999999999998665444 8999999999999997 489999
Q ss_pred chhhhhhHHHHHHhcCCCcccccccCCCCCCcccccccCCCCchhhhHHHHHHHHHHHHHHHhhHHhcccc-----CCcc
Q 001042 319 EPELSSLRGDILKLLYPNVVGIDRMNAGGSSEHYSKVCSKPWGEEHDLQLRFIFLKFLASILGGYRNFIEN-----TGTQ 393 (1178)
Q Consensus 319 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~Fl~~~~~ll~~y~~~l~~-----~~~~ 393 (1178)
....+++...|..++.|++...|.+++..+.. ......+|+++|++|+++|++||+|||.|+.. .+..
T Consensus 293 ~~~~~~~~~~l~mvlfp~l~qaDLafP~p~~i-------~~~d~~~DKeLRA~FirlFAqLLqGYr~cl~~~RIhp~pvi 365 (1732)
T KOG1090|consen 293 DYYYNSLHQRLRMVLFPTLSQADLAFPNPERI-------EVDDFILDKELRACFIRLFAQLLQGYRYCLLYTRIHPTPVI 365 (1732)
T ss_pred cHHHHHHHHHHHHHhccccchhhcCCCChhhc-------cchHHHHhHHHHHHHHHHHHHHHHhhheeEEEEEecCCceE
Confidence 99999999999999999999999988744331 11235689999999999999999999999964 3688
Q ss_pred CcChHHHhcccccCCCCCCchHHHHHHHHhhHHHHHHcc-cCCCCCc---h-hHHHHHHHHhccCCCcee-e-cCCCCCC
Q 001042 394 VFNAQAFLKKRSRSTNQPPDPMITQFLDSQGFLDYLERG-LGSDENN---S-NLLDKLQDAIGRGQNPTS-I-LPSSSAE 466 (1178)
Q Consensus 394 ~F~~~~Fl~~~~~~~~~~~~~F~~~f~~tq~F~~Fie~~-~~~~~~~---~-~~~~~~~~~~~~~e~~~~-~-~~~~~~~ 466 (1178)
.|++.+|+..|... +..|+. .++++.|+.|+.+| +--+..+ . .|.+..+..+.+ +|+.. + +.. +
T Consensus 366 tFHkaaFlG~R~L~----e~~fl~-vL~sm~F~tFv~eRg~P~R~~DlfDEl~~~~~~~~~~~~-qn~t~~~~l~h-i-- 436 (1732)
T KOG1090|consen 366 TFHKAAFLGFRKLT----EMMFLS-VLKSMYFQTFVLERGLPRRKHDLFDELSCFKELDQLIFK-QNSTSSESLKH-I-- 436 (1732)
T ss_pred EEehhhhcchhhhH----HHHHHH-HHHHHHHHHHHhhcCCCCCcchhHHHHHHhHHHHHHHHh-hCccHHHHHHH-H--
Confidence 99999999999887 557777 99999999999554 4222221 1 122222222221 22211 0 000 0
Q ss_pred CCc-cccCCCCCCCCCCCcceeccCCCcccchhhHHHHhhhhhhccCC---Cccc-CCCCCCCcccccccCccccCC-hH
Q 001042 467 PEV-ITISDPDIGTSGLGAKYTYDRFPSNVRTEEQEEKRRQILASASG---SFEY-SGKLNSPPSMLVSKDSKDSLS-PI 540 (1178)
Q Consensus 467 p~~-~~~~~~~~~~~~~~~~~~y~~fp~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~p~~p~~~~~~~~~~~~~-~~ 540 (1178)
.|+ -..-+.+++++++.+|. ++.||++....++| +.+++.+++.+ .+|. .+..|++|.+...-+.+..+. ++
T Consensus 437 qel~~~LyqnERp~E~~~~R~-q~~Fpri~~~sv~~-i~q~~~~k~~gvpp~~~~~r~~~pmgP~~~~~le~~~n~~~~s 514 (1732)
T KOG1090|consen 437 QELSCELYQNERPMEKCSARK-QEIFPRIHWISVKE-IAQNNNSKIHGVPPKMRSNRILQPMGPVVNTHLEYHANQFEAS 514 (1732)
T ss_pred HHHHHHHHhccCCcccchhcc-CCCCcccchHHHHH-HHHcchhhhcCCCccceeeeeeecCCCCchHHHHhccchhhhH
Confidence 000 00001235667888888 99999988777877 77777777642 2233 257999998865455455544 69
Q ss_pred HHHHhhh---------ccchhhhhhhhHHHHHHHhcCCCCCCCCccccccEEeeecccccCCCCCCcchhhhhccccccc
Q 001042 541 ERAAERD---------RMVLDIKVKLQGLWLRLLKLGATDDPLSSFEYGTILALIESDAEGIGGSGFVECIREHIHSGWH 611 (1178)
Q Consensus 541 ~r~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 611 (1178)
+||+|++ +|+.+|+|+|| ||+|+|+. ++||.++ |++|++|++ +++
T Consensus 515 ArRlEvlRnClsyiFEgkv~~A~KlLp-AV~rsl~~--------------------r~aR~~L----crel~~~v~-~nk 568 (1732)
T KOG1090|consen 515 ARRLEVLRNCLSYIFEGKVAFASKLLP-AVKRSLRF--------------------RPARIEL----CRELNQKVS-HNK 568 (1732)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHhhhH-HHHHHhcC--------------------ChHHHHH----HHHHHhhhc-ccc
Confidence 9999999 89999999999 99999999 9999999 999999999 777
Q ss_pred cccChHHHHHHHHHHHHHHhhhhccCChHHHHHHH-HHHHHHHhhhcCCchhH----HHHHHhhHHHHHHHHHHHHHHH
Q 001042 612 CQLTEEQFIAVKELLKTAIGRATSRNDVSTIRDAL-EVSAEMFKKDANNVSDY----VQRHLISLSIWEELRFWEGYFD 685 (1178)
Q Consensus 612 ~~l~~~~f~~~~~~~~~~~~~~~~~~d~~~~~~~l-~~~~~~~~~~~~~~~~y----~q~~l~~~p~~~~~~~~~~~~~ 685 (1178)
||+|||++|+++||+|||.|++ .|++||++|| |+|+.||||+++++.|| ||+| -||+|++|||++|.
T Consensus 569 --LdhqQFe~vvr~MN~aLQ~~~~-~De~gvaaaLlplstvfcRKls~Gv~QfaYt~vQeH----~vWkn~qFWes~Fy 640 (1732)
T KOG1090|consen 569 --LDHQQFEDVVRLMNAALQAECE-EDEDGVAAALLPLSTVFCRKLSQGVQQFAYTAVQEH----KVWKNQQFWESCFY 640 (1732)
T ss_pred --ccHHHHHHHHHHHHHHHHHhhc-cchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH----hhhcchHHHHHHHH
Confidence 9999999999999999999999 9999999999 99999999999999999 5999 99999999999994
No 2
>KOG3569 consensus RAS signaling inhibitor ST5 [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-66 Score=544.62 Aligned_cols=378 Identities=28% Similarity=0.520 Sum_probs=315.8
Q ss_pred CcceEEEEEeccCCCcccCCCCCCCCCCccccccccccccccCCCCCCCCCCCCCCcccCCCceEEeecCCCCCCCCCCC
Q 001042 2 ARVFEYFVVCGIGPEIRTLDGSKGYHGPEYYYLSSVLDQFPPLNHSLYTPPPPQLSTCVLPAGVQFYSSGFDSDDPSTFP 81 (1178)
Q Consensus 2 ~rl~dyfvvvG~~~~~~~~~~~~~~~~~~~~~~p~vl~~yP~~~~~~~~~~~~~v~~fc~P~g~~~~~~~~~~~~~~~~p 81 (1178)
..+||||++|.++...+ ..|.|.|+++||+.-++ ++....||+||||.++++.+ ..+.+
T Consensus 11 ~~lfe~f~evs~pk~~~------------~~~~P~v~~QFP~d~~d--ee~lkaipqFCFP~~~e~~~-------vs~~~ 69 (425)
T KOG3569|consen 11 RTLFEYFVEVSLPKKPG------------NTYLPEVTYQFPPDFQD--EEILKAIPQFCFPDAVEWLP-------VSEYG 69 (425)
T ss_pred ccceeEEEEEecCCCCC------------CccCccchhhCCCcccc--HHHHhhchhccCCccccccc-------ccccc
Confidence 35899999999766542 23799999999976654 35678999999999998754 22344
Q ss_pred -ceeEEEEEcCCCCeEEEEEEEecCCCCHHHHHhccCCCCccCCeEEEEEcCCChHHHHHHHHHHHHHHhhccCCCCccH
Q 001042 82 -RTYPIVLTEGDGSKIYVSCISFRDPVSEDIAEAYRIPANSFADKCICLVSRSPSFRILRNALEEIYSLCFLSDGSSKPL 160 (1178)
Q Consensus 82 -~~f~fvlT~~~g~~~Yg~cl~f~e~~~~~~~~~~~~~~~~~~~~~icllS~~p~~~~f~~~L~~i~~~~~~~~~~~~~~ 160 (1178)
++|+|||||+||+|.+|+|. .+++ .|+||||||+.|||++|.++|+.+.++.-.. ....+
T Consensus 70 ~q~FsFvLTd~dg~rrFGfCR---------------L~~G--~~~c~CilS~l~wF~vF~KlLn~v~~~~~~~--q~~~v 130 (425)
T KOG3569|consen 70 SQTFSFVLTDEDGSRRFGFCR---------------LPSG--LPECYCILSRLGWFGVFSKLLNEVEDRRGIS--QEADV 130 (425)
T ss_pred cceEEEEEEcCCCceeeeeEe---------------cCCC--CCeEEEEeeCCChHHHHHHHHHHHHHHhcch--HHHHH
Confidence 79999999999999999994 2222 7899999999999999999999998875422 13344
Q ss_pred HHHHHhhcccCCCCCCCCceEEeeeccceeEEeCCCCCCCCCC--CcchHHHhccCChhhHHHHHHHHhccccEEEEeCC
Q 001042 161 WDVISHLVSNVPLPTPGKNRVLFAIENCLLSVEAPPKEGLPHA--DISFQPLVQLLDVDNLITLFTAVLLERRILLRSNK 238 (1178)
Q Consensus 161 ~~~i~~~l~~~p~P~~g~~~~~~~~~~~~~~~~~p~~~~lp~~--~~~~~~l~~~l~~~~~l~l~~~~L~E~~il~~s~~ 238 (1178)
+..+.+ +++.|+|.||.+..+..-.........|...+||.. +..|..||.+++++|++.||+++|+||||||++++
T Consensus 131 ~~~l~~-l~~~p~P~pg~tv~l~~~~~~~~~e~ipd~r~LpS~~E~~~f~elf~als~~qml~ifASlL~ERRIifia~K 209 (425)
T KOG3569|consen 131 EPFLRS-LYEAPFPAPGKTVKLKVFSPGSGTEVIPDTRPLPSILEHVDFTELFVALSVRQMLQIFASLLLERRIIFIASK 209 (425)
T ss_pred HHHHHH-HhcCCCCCCCCeEEEEecCCCCceEECcCCCCCCCcccccCHHHHHhhcCHHHHHHHHHHHHhhceeEeeccc
Confidence 445555 667799999988554443333345556777777754 56799999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHcccccCCCceeecccchhhhhhccCCcceEEeecCCC--CccccCCCcEEEEEcCCCeeeCC-CCCC
Q 001042 239 YSLLTLVSEAICHLIYPFRWQHVYIPLLFFSGVDYIDAPTPYMMGLHSGV--DTSNLAMDGVVVVDLEYNRICTT-EEIP 315 (1178)
Q Consensus 239 ~~~ls~~~~al~~ll~Pf~w~~~~IP~lP~~l~~~l~aP~P~iiGv~~~~--~~~~~~~~~~~~vdlD~~~i~~~-~~~~ 315 (1178)
++.||+|++|..+|||||.|||+|||+||++|+||++|||||+||||++. +..+.+++||++||||+|+++.+ +|..
T Consensus 210 LStLssCiHa~~ALLYPm~WqH~yIPvLPpsLlD~vCaPmPyLIGv~~s~lerv~~~~leeVv~vnld~~tl~~~fdD~~ 289 (425)
T KOG3569|consen 210 LSTLSSCIHAVAALLYPMSWQHTYIPVLPPSLLDYVCAPMPYLIGVHSSLLERVRELPLEEVVMVNLDENTLESPFDDVQ 289 (425)
T ss_pred hhHHHHHHHHHHHHhhhhhhheeeeccCCHHHHhHhcCCcceeecchHHHHHHHhhCCccceEEEEccCCeeeccccchh
Confidence 99999999999999999999999999999999999999999999999986 66778899999999999999998 7799
Q ss_pred CCCchhhhhhHHHHHHhcCCCcccccccCCCCCCcccccccCCCCchhhhHHHHHHHHHHHHHHHhhHHhccccC--Ccc
Q 001042 316 PIPEPELSSLRGDILKLLYPNVVGIDRMNAGGSSEHYSKVCSKPWGEEHDLQLRFIFLKFLASILGGYRNFIENT--GTQ 393 (1178)
Q Consensus 316 ~lP~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~Fl~~~~~ll~~y~~~l~~~--~~~ 393 (1178)
.||.+..+.|+++|++.- + ..+..+.++|+|+|+.++++|+++++.. ...
T Consensus 290 ~LP~~v~~~Lk~~L~k~~---l-------------------------a~~d~Vs~~Flra~v~lfG~Y~~~l~~~~~e~~ 341 (425)
T KOG3569|consen 290 ALPPKVQSALKNRLRKNE---L-------------------------ATNDGVSRAFLRAFVELFGHYRSALTQSPGEPR 341 (425)
T ss_pred hCCHHHHHHHHHHHhhhc---c-------------------------ccCcchHHHHHHHHHHHhhhhhhhcccCCCCCc
Confidence 999998888888887621 0 1145678899999999999999999865 578
Q ss_pred CcChHHHhcc-cccCCCCCCchHHHHHHHHhhHHHHHHcccCCCCCchhHHHHHHHHhcc
Q 001042 394 VFNAQAFLKK-RSRSTNQPPDPMITQFLDSQGFLDYLERGLGSDENNSNLLDKLQDAIGR 452 (1178)
Q Consensus 394 ~F~~~~Fl~~-~~~~~~~~~~~F~~~f~~tq~F~~Fie~~~~~~~~~~~~~~~~~~~~~~ 452 (1178)
.|.+++|.++ ++++ .+.|++.|+++|+|.+||++|+...+.+..+.|...+|+..
T Consensus 342 tF~eE~F~k~~~s~s----~r~Fl~~~~~~QlF~~FI~~Rl~~~n~g~G~~dqfe~Ei~~ 397 (425)
T KOG3569|consen 342 TFQEEAFVKQVRSKS----MRRFLEVFVELQLFKQFIQDRLELKNDGKGFFDQFEEEIEE 397 (425)
T ss_pred eeeHHHHHHHcccHH----HHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHh
Confidence 9999999999 5444 67999999999999999999998888777888877777763
No 3
>KOG3570 consensus MAPK-activating protein DENN [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-51 Score=465.90 Aligned_cols=417 Identities=22% Similarity=0.381 Sum_probs=322.8
Q ss_pred CcceEEEEEeccCCCcccCCCCCCCCCCccccccccccccccCCCCCCCCCCCCCCcccCCCceEEeecCCCCCCCCCCC
Q 001042 2 ARVFEYFVVCGIGPEIRTLDGSKGYHGPEYYYLSSVLDQFPPLNHSLYTPPPPQLSTCVLPAGVQFYSSGFDSDDPSTFP 81 (1178)
Q Consensus 2 ~rl~dyfvvvG~~~~~~~~~~~~~~~~~~~~~~p~vl~~yP~~~~~~~~~~~~~v~~fc~P~g~~~~~~~~~~~~~~~~p 81 (1178)
.||+||.||||-. .+.... .+-.|++|.|||.+||.+|| +|..+-.||-|+|+.-..+. ......+
T Consensus 9 PRL~DylviVGar----~P~~~~------~vq~PelLRRYP~~DH~dFp-LP~Dvv~FCQPEGCtsv~~R---r~~~rD~ 74 (1588)
T KOG3570|consen 9 PRLLDYLVIVGAR----HPSSDS------VAQTPELLRRYPLEDHTEFP-LPPDVVFFCQPEGCLSVRQR---RMSLRDD 74 (1588)
T ss_pred hHHhhhhheeccc----CCCCCC------ccccHHHHhhCCccccccCC-CCCCeEEEeCCccccchhhh---hhcccCC
Confidence 4899999999943 221111 23389999999999999998 55678899999999764432 1224567
Q ss_pred ceeEEEEEcCCCCeE-EEEEEEecCCCCHHHHHh--------c-c-----------------------CC----------
Q 001042 82 RTYPIVLTEGDGSKI-YVSCISFRDPVSEDIAEA--------Y-R-----------------------IP---------- 118 (1178)
Q Consensus 82 ~~f~fvlT~~~g~~~-Yg~cl~f~e~~~~~~~~~--------~-~-----------------------~~---------- 118 (1178)
++|+|.|||.|..++ ||+|+.||+++.++.... . + .|
T Consensus 75 tsFVF~LTdKDsgktRYGICvNFYrsf~~r~s~~~g~~gag~Rg~~g~h~~~a~~~gg~~~s~s~s~~qP~sads~~~~~ 154 (1588)
T KOG3570|consen 75 TSFVFTLTDKDTGVTRYGICVNFYRSFQKRISKEKGEGGAGSRGKEGTHATCASEEGGTESSESGSSLQPLSADSTPDVN 154 (1588)
T ss_pred ceEEEEEecccCcceeeEEEeeeehhhhhccchhccccccccCCCCCCccccccCCCCcCcCcCCcCcCCCccCCCCccc
Confidence 899999999988876 999999999988432110 0 0 00
Q ss_pred --------------CCccCCeEEEEEcCCChHHHHHHHHHHHHHHhhccCC-------------------------C---
Q 001042 119 --------------ANSFADKCICLVSRSPSFRILRNALEEIYSLCFLSDG-------------------------S--- 156 (1178)
Q Consensus 119 --------------~~~~~~~~icllS~~p~~~~f~~~L~~i~~~~~~~~~-------------------------~--- 156 (1178)
.....-.++|+|||||||+.||++|..|.++....+. +
T Consensus 155 ~sP~~~r~a~~~~r~rn~sLTSLC~iSHhPFfstFrecL~~LKrliD~cner~~~kr~G~~~~v~rD~vW~ilTG~h~~e 234 (1588)
T KOG3570|consen 155 QSPRGKRRAKAGSRSRNSTLTSLCVLSHYPFFSTFRECLYTLKRLVDCCSERLLGKKLGIPRGVQRDTMWRIFTGSLLVE 234 (1588)
T ss_pred cCCCCchhhhhcccccccchhhhhhhccCchHHHHHHHHHHHHHHHHhhcccchhhhcCCcccccccceeeeeccccccc
Confidence 0123456899999999999999999998877311110 0
Q ss_pred ---------CccHHHHHHhhcccCCCCCCCCceEEeeec----cceeEEeCCCCCCCCCCCcchHHHhccCChhhHHHHH
Q 001042 157 ---------SKPLWDVISHLVSNVPLPTPGKNRVLFAIE----NCLLSVEAPPKEGLPHADISFQPLVQLLDVDNLITLF 223 (1178)
Q Consensus 157 ---------~~~~~~~i~~~l~~~p~P~~g~~~~~~~~~----~~~~~~~~p~~~~lp~~~~~~~~l~~~l~~~~~l~l~ 223 (1178)
...||.+|..+|.. |+|.||..+|.+.+- ...+.|..|+..++.+.|++++..|+.||++.+++++
T Consensus 235 ~~~s~vlhd~rEIEtWIlrLLss-PVPVpG~trV~iEVlp~~l~~~l~FALPDhtRFtLvDFPLHlPlElLGvd~cL~Vl 313 (1588)
T KOG3570|consen 235 EKSSALLHDLREIEAWIYRLLRS-PVPVSGQKRVDIEVLPQELQPALTFALPDPSRFTLVDFPLHLPLELLGVDACLQVL 313 (1588)
T ss_pred cccHHHHHHHHHHHHHHHHHhcC-CCCCCCcceeEEEecChhcccceeeccCCCceeeeecccccCcHHHhhHHHHHHHH
Confidence 11288889887765 899999999998873 4557888999999999999999999999999999999
Q ss_pred HHHhccccEEEEeCCcchHHHHHHHHHHcccccCCCceeecccchhh---hhhccCCcceEEeecCCC---CccccCCCc
Q 001042 224 TAVLLERRILLRSNKYSLLTLVSEAICHLIYPFRWQHVYIPLLFFSG---VDYIDAPTPYMMGLHSGV---DTSNLAMDG 297 (1178)
Q Consensus 224 ~~~L~E~~il~~s~~~~~ls~~~~al~~ll~Pf~w~~~~IP~lP~~l---~~~l~aP~P~iiGv~~~~---~~~~~~~~~ 297 (1178)
+++|+|.||+|.|++|+.|++++.|+++||||++|.++.||+||..| ..+|-|||||||||.+++ +....-++|
T Consensus 314 T~imlE~Kvv~QSRdYNAlSMsvmafVamlYPLEYMFPVIPLLPtcm~sAEQLLLAPTPfiIGVPaSFf~ykk~f~lPdD 393 (1588)
T KOG3570|consen 314 TCILLEHKVVLQSRDYNALSMSVMAFVAMIYPLEYMFPVIPLLPTCMASAEQLLLAPTPYIIGVPASFFLYKLDFKMPDD 393 (1588)
T ss_pred HHHHHhceeeeeeccccHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHhcCCCCeEeccchHHhhhhhhccCCCc
Confidence 99999999999999999999999999999999999999999999755 578999999999999987 344455689
Q ss_pred EEEEEcCCCeeeCCC---CCCCCCchhhhhhHHHHHHhcCCCcc---cccccCCC-------------CC------Cccc
Q 001042 298 VVVVDLEYNRICTTE---EIPPIPEPELSSLRGDILKLLYPNVV---GIDRMNAG-------------GS------SEHY 352 (1178)
Q Consensus 298 ~~~vdlD~~~i~~~~---~~~~lP~~~~~~l~~~l~~~l~~~~~---~~~~~~~~-------------~~------~~~~ 352 (1178)
|++||||++++..|. .+|.||+++...||++|++++..... .+....++ .. +...
T Consensus 394 vwlVDLDsn~l~~Pt~~e~iP~LPEPe~t~LK~hLKqa~~~~sln~~~~~~~~~~h~~q~~~m~~~~~~n~~q~~pst~~ 473 (1588)
T KOG3570|consen 394 VWLVDLDSNRVIAPTNAEVLPILPEPESLELKKHLKQALASMSLNTQPILNLEKFHEGQEIPLLLGRPSNDLQSTPSTEF 473 (1588)
T ss_pred eEEEecCCCceeCCCCcccCCCCCCcchHHHHHHHHhhHhhhcccccccccccCcccccccceecCCccccccCCCCccc
Confidence 999999999999984 59999999999999999998532211 11110000 00 0000
Q ss_pred ccccCCCCchhhhHHHHHHHHHHHH--HHHhhHHhcccc-----CCccCcChHHHhcccccCCCCCCchHHHHHHHHhhH
Q 001042 353 SKVCSKPWGEEHDLQLRFIFLKFLA--SILGGYRNFIEN-----TGTQVFNAQAFLKKRSRSTNQPPDPMITQFLDSQGF 425 (1178)
Q Consensus 353 ~~~~~~~~~~~~~~~ir~~Fl~~~~--~ll~~y~~~l~~-----~~~~~F~~~~Fl~~~~~~~~~~~~~F~~~f~~tq~F 425 (1178)
.......-....|.+-|-|+.+||. ..|+++..+.+. -++..|...+||.+|++. .+|+.+|..||+.
T Consensus 474 np~~yG~DvDSVDVAtRVAMVrFFNsaNvl~nF~eHTRTLRLyPRPVVafQ~~SFLrSRPr~-----tqf~~~laRTQAV 548 (1588)
T KOG3570|consen 474 NPLIYGNDVDSVDVATRVAMVRFFNSANVLQGFQMHTRTLRLFPRPVVAFQAGSFLASRPRQ-----TPFAEKLARTQAV 548 (1588)
T ss_pred CchhccCccchhhhHHHHHHHHHhhhHHHhhhHHhhhhhhhccCcceeEEeccchhhcCccc-----cHHHHHHHHHHHH
Confidence 0011111223467889999999995 578888876643 267889999999999875 5899999999999
Q ss_pred HHHHHcccCCCCC
Q 001042 426 LDYLERGLGSDEN 438 (1178)
Q Consensus 426 ~~Fie~~~~~~~~ 438 (1178)
++|-|.++.+.+.
T Consensus 549 EyfaEw~L~PtN~ 561 (1588)
T KOG3570|consen 549 EYFGEWILNPTNY 561 (1588)
T ss_pred HHHHHhhcCcchH
Confidence 9999999887543
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-49 Score=417.99 Aligned_cols=355 Identities=24% Similarity=0.423 Sum_probs=309.1
Q ss_pred CcccccCCcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeec
Q 001042 761 PAEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTK 838 (1178)
Q Consensus 761 ~~~~~gh~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~ 838 (1178)
...+.||.++|.|++|||||+.||+|++| +|+||.++.. +.++.+||...|.|++|+
T Consensus 108 ssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeT-------------------p~~t~KgH~~WVlcvaws-- 166 (480)
T KOG0271|consen 108 SSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTET-------------------PLFTCKGHKNWVLCVAWS-- 166 (480)
T ss_pred ccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCC-------------------cceeecCCccEEEEEEEC--
Confidence 34478999999999999999999999999 9999999877 788999999999999998
Q ss_pred cceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEE-------ecCCCEEEEEeCCCcEEEEECC
Q 001042 839 REVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI-------NSDRGKVVSGSDDQSVLVWDKQ 911 (1178)
Q Consensus 839 ~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~-------s~d~~~l~sgs~dg~I~iwd~~ 911 (1178)
|||+.||+|+.||+|++||.. .+.+....+.+|...|+++ .|..+++++++.||.++|||+.
T Consensus 167 ----------PDgk~iASG~~dg~I~lwdpk-tg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~ 235 (480)
T KOG0271|consen 167 ----------PDGKKIASGSKDGSIRLWDPK-TGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTK 235 (480)
T ss_pred ----------CCcchhhccccCCeEEEecCC-CCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEcc
Confidence 999999999999999999987 5677789999999999976 3677899999999999999999
Q ss_pred CCcEEEEecCCCCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 001042 912 TSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIW 991 (1178)
Q Consensus 912 t~~~~~~l~~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lw 991 (1178)
.++++..+.+|+.+|+|+.|-..+++++|+.|++|++|+...|.+...+++|...|+.++.+.+.- |=+|..|.+
T Consensus 236 ~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~-LRtgaf~~t---- 310 (480)
T KOG0271|consen 236 LGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYV-LRTGAFDHT---- 310 (480)
T ss_pred CceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhh-hhccccccc----
Confidence 999999999999999999999889999999999999999999999999999999999999886532 223332221
Q ss_pred ECCCCceEEEEe-----cCCccEEEEEEcCCEEEEEeCCCcEEEEEcCC-CeeeeEeccCCCcEEEEEEecCCCEEEEEe
Q 001042 992 DIRAGRQMHKFL-----GHTKWIRSIRMDRDTVITGSDDWTARMWSISR-GTCDAVLACHAGPVQCVEYSSSDRGIITGS 1065 (1178)
Q Consensus 992 D~~~~~~~~~~~-----~~~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~-~~~~~~~~~h~~~I~~l~~spdg~~L~sgs 1065 (1178)
+....... .....-....-++..+++|++|.++.+|+-.. .+++..+.+|..-|+.+.||||++++|+++
T Consensus 311 ----~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaS 386 (480)
T KOG0271|consen 311 ----GRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASAS 386 (480)
T ss_pred ----cccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEee
Confidence 11111110 00001112223567999999999999999754 458888999999999999999999999999
Q ss_pred CCCcEEEEECCCCceEEEEEecccCCcEEEE--ecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCC
Q 001042 1066 SDGLLRFWENDDGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQK 1143 (1178)
Q Consensus 1066 ~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~ 1143 (1178)
-|..|++||.++| +.+.++.+|-..|..+ +.|.++|++||.|.++++|++.+. ++...+.|
T Consensus 387 FDkSVkLW~g~tG--k~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tk---------------Kl~~DLpG 449 (480)
T KOG0271|consen 387 FDKSVKLWDGRTG--KFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTK---------------KLKQDLPG 449 (480)
T ss_pred cccceeeeeCCCc--chhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeee---------------eecccCCC
Confidence 9999999999999 7889999999999776 789999999999999999999855 66777889
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001042 1144 TVAVVRCIASDLERKRICSGGRNGLLRLWE 1173 (1178)
Q Consensus 1144 h~~~V~~lafspdg~~Las~s~Dg~V~IWd 1173 (1178)
|.+.|.++.|+|||+.+++|+.|..+++|.
T Consensus 450 h~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 450 HADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred CCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999999999999999999999999999995
No 5
>KOG2080 consensus Uncharacterized conserved protein, contains DENN and RUN domains [Signal transduction mechanisms]
Probab=100.00 E-value=5.2e-48 Score=436.66 Aligned_cols=387 Identities=28% Similarity=0.470 Sum_probs=299.3
Q ss_pred ccccccccCCCCCCCCCCCCCCcccCCCceEEeecCCCCCCCCCCCceeEEEEEcCCCCeEEEEEEEecCCCCHH-HH--
Q 001042 36 SVLDQFPPLNHSLYTPPPPQLSTCVLPAGVQFYSSGFDSDDPSTFPRTYPIVLTEGDGSKIYVSCISFRDPVSED-IA-- 112 (1178)
Q Consensus 36 ~vl~~yP~~~~~~~~~~~~~v~~fc~P~g~~~~~~~~~~~~~~~~p~~f~fvlT~~~g~~~Yg~cl~f~e~~~~~-~~-- 112 (1178)
+.+.+||+.... .|..-..+.+.|+|.|+.++.+ +....|+|++|+.|.+||.|.||..+.|||.+... ++
T Consensus 101 kpla~ypenvpw-nPfd~~~~~ml~mP~gl~frtq-----~~~~Ep~FhSfiitredG~r~ygf~l~fyeevrsk~ic~a 174 (1295)
T KOG2080|consen 101 KPLAWYPENVPW-NPFDKLDFFMLCMPKGLGFRTQ-----DDVPEPQFHSFIITREDGSRTYGFDLTFYEEVRSKQICGA 174 (1295)
T ss_pred chhhcCccCCCC-Ccccccceeeeccccccceecc-----CCCCchhhheeeEEcccCccccCcceeechhhchhhhhhH
Confidence 789999998764 4555667888999999988764 45567999999999999999999999999987621 10
Q ss_pred ----------H------hc-------------cC-----------------CCCccCCeEEEEEcCCChHHHHHHHHHHH
Q 001042 113 ----------E------AY-------------RI-----------------PANSFADKCICLVSRSPSFRILRNALEEI 146 (1178)
Q Consensus 113 ----------~------~~-------------~~-----------------~~~~~~~~~icllS~~p~~~~f~~~L~~i 146 (1178)
+ .. .. ....|+.||||++...||-.+.+++|..+
T Consensus 175 m~tl~~m~~te~~nsl~~~s~sd~~l~ssldrsep~~v~v~g~~~~~ydi~rd~lyvaKsi~li~~lp~~~A~~~fL~~l 254 (1295)
T KOG2080|consen 175 MQTLYSMHNTEIYNSLEALSDSDKDLTSSLDRSEPTEVVVLGRVKNSYDISRDTLYVAKSICLITPLPFMSACSEFLSQL 254 (1295)
T ss_pred HHHHHHHHHHHhhhhhhcCccchhhccCccccCCCceeeeechhhhccccccchHHhhhheeecccchHHHHHHHHHHHH
Confidence 0 00 00 01369999999999999999999999999
Q ss_pred HHHhhccCCCCccHHHHHHhhcccCCCCCCCCceEEeeeccceeEEeCCCCCCCCCCCcchHHHhccCChhhHHHHHHHH
Q 001042 147 YSLCFLSDGSSKPLWDVISHLVSNVPLPTPGKNRVLFAIENCLLSVEAPPKEGLPHADISFQPLVQLLDVDNLITLFTAV 226 (1178)
Q Consensus 147 ~~~~~~~~~~~~~~~~~i~~~l~~~p~P~~g~~~~~~~~~~~~~~~~~p~~~~lp~~~~~~~~l~~~l~~~~~l~l~~~~ 226 (1178)
|+.....+...+|+|.+|.|+++++|+|.||+....+..-.. +..++|..+.+|+.|+.+..+|..||++|++.+|+|+
T Consensus 255 yr~~trq~~~plpLEsyi~Nilyev~lp~pgrsl~vy~~~~~-ii~q~~~a~elpL~dfplR~~F~~lgVenviql~tCv 333 (1295)
T KOG2080|consen 255 YRAVTRQQPPPLPLESYIYNILYEVPLPPPGRSLKVYGVYDP-IICQRPFADELPLDDFPLREYFELLGVENVIQLFTCV 333 (1295)
T ss_pred HhccCCCCCCCcCHHHHHhhhheecccCCCCceeeEEecCCc-ccccCCCCcccccccHhHHHHHHHhcchHHHHHHHHH
Confidence 998777777889999999999999999999998666555443 4556888899999999999999999999999999999
Q ss_pred hccccEEEEeCCcchHHHHHHHHHHcccccCCCceeecccchhhhhhccCCcceEEeecCCCCcc-ccCC-CcEEEEEcC
Q 001042 227 LLERRILLRSNKYSLLTLVSEAICHLIYPFRWQHVYIPLLFFSGVDYIDAPTPYMMGLHSGVDTS-NLAM-DGVVVVDLE 304 (1178)
Q Consensus 227 L~E~~il~~s~~~~~ls~~~~al~~ll~Pf~w~~~~IP~lP~~l~~~l~aP~P~iiGv~~~~~~~-~~~~-~~~~~vdlD 304 (1178)
|+|.+|++.|.++.+|..++|.+.+|||||+|||+|+||||.++..+|+||+|||||.|++.+.. +.+. ...++||+|
T Consensus 334 Lle~qill~s~dyqrlm~v~e~itsllfpf~w~hvy~pilpa~l~hFldapvp~lmGlhs~drs~~el~~Ea~lcFvdid 413 (1295)
T KOG2080|consen 334 LLENQILLYSQDYQRLMTVAECITSLLFPFQWQHVYVPILPASLLHFLDAPVPYLMGLHSDDRSKLELPQEANLCFVDID 413 (1295)
T ss_pred HhhhHHHhhhhhHHHHHHHHhhhhhhccccccccccccccHHHHHHHhcCCcceecccCcccHhhhcCcchhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999985322 2222 357899999
Q ss_pred CCeeeCCCCCCCCCchh-h-hhhHHHHHHhc------------------------------CCCc---------------
Q 001042 305 YNRICTTEEIPPIPEPE-L-SSLRGDILKLL------------------------------YPNV--------------- 337 (1178)
Q Consensus 305 ~~~i~~~~~~~~lP~~~-~-~~l~~~l~~~l------------------------------~~~~--------------- 337 (1178)
+..|+.|+++|.+|.+. + ..+-.-|.+.. .+.+
T Consensus 414 ~~~iqlpeelp~fp~klef~~e~s~il~kf~~~~~~p~EGs~~~d~~iS~~k~l~g~~lvr~~t~~~tp~g~vat~~l~s 493 (1295)
T KOG2080|consen 414 NHFIQLPEELPQFPNKLEFQQETSEILSKFGSQWEIPPEGSLHCDESISKLKDLLGVSLVRDKTYEATPNGNVATEDLIS 493 (1295)
T ss_pred hcccCCchhcccchhHHHHHHHHHHHHHHhhccccCCCccccchhhhHHHHHhhhhhhhhcCcccccCCCCccccCchhh
Confidence 99999999999999752 1 01111111111 0000
Q ss_pred ---ccccccCC--------------C------------------CCCcc-----c--ccccCC------CCchhhhHHHH
Q 001042 338 ---VGIDRMNA--------------G------------------GSSEH-----Y--SKVCSK------PWGEEHDLQLR 369 (1178)
Q Consensus 338 ---~~~~~~~~--------------~------------------~~~~~-----~--~~~~~~------~~~~~~~~~ir 369 (1178)
...|...+ . ...+. + .+.+.- -+.-..+..+|
T Consensus 494 ~~~~k~d~vi~~~~~La~r~gVr~eg~~p~~~l~tt~~~~~~~~sp~~~~~~~~~~r~k~qKl~~~~~~~qd~r~n~~~r 573 (1295)
T KOG2080|consen 494 YELLKTDEVIARLQALAKRTGVRYEGAWPVHQLNTTLLDGANLISPAPSPWRQRYPRLKDQKLGCNENELQDYRLNSQYR 573 (1295)
T ss_pred cccccccchhhhHHHHHhccCccccCCCcceeccccccccccccCcCCCccccccchhhhhccCcccchhheecchhHHH
Confidence 00000000 0 00000 0 000000 01112456899
Q ss_pred HHHHHHHHHHHhhHHhccccC------------CccCcChHHHhcccccCCCCCCchHHHHHHHHhhHHHHHHccc
Q 001042 370 FIFLKFLASILGGYRNFIENT------------GTQVFNAQAFLKKRSRSTNQPPDPMITQFLDSQGFLDYLERGL 433 (1178)
Q Consensus 370 ~~Fl~~~~~ll~~y~~~l~~~------------~~~~F~~~~Fl~~~~~~~~~~~~~F~~~f~~tq~F~~Fie~~~ 433 (1178)
++|++-|.++|..|..|.... ....|||.+|+...+.. .++|+..|+++|||..||+..+
T Consensus 574 evflnrf~~mf~~ye~fvi~~~Q~~eew~tnre~mqnfDK~s~~sdQp~h----~~afls~fle~qlfasfidnli 645 (1295)
T KOG2080|consen 574 EVFLNRFTQMFADYEQFVIQPQQDLEEWKTNREQMQNFDKMSFLSDQPEH----LLAFLSRFLENQLFASFIDNLI 645 (1295)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHhhhhhhhhcccChhh----HHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988642 24569999999876554 6799999999999999999655
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.8e-42 Score=361.34 Aligned_cols=313 Identities=26% Similarity=0.420 Sum_probs=274.4
Q ss_pred cccccccCcc-cc-cCCCCC-------CCC-----CCCCCCcccccCCcce-EEEEecCCCCcccccccc--eeeccccc
Q 001042 735 SIKGQSSLSN-GM-PSPLSK-------DAT-----NDDQQPAEASGIGRSW-VQSMFSREASSRSHSFSR--VRKWTSDA 797 (1178)
Q Consensus 735 ~~~~~~~~~~-~~-fSP~g~-------~~~-----~~~~~~~~~~gh~~~i-~~~aFSpdg~~las~~~d--I~vWd~~~ 797 (1178)
+.+...-+.| |+ |||+|+ |.+ -++..|..++..|.+| .|++|||||+.||+|+.+ |++||-.+
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpkt 188 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKT 188 (480)
T ss_pred cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCC
Confidence 4444445566 88 999998 211 1455565554445555 555999999999999999 99999999
Q ss_pred ccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeE
Q 001042 798 ANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRA 877 (1178)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~ 877 (1178)
|++ ..+.|.||...|++++|.|..- .|..++||+++.||+|+|||+. ....+.
T Consensus 189 g~~------------------~g~~l~gH~K~It~Lawep~hl-------~p~~r~las~skDg~vrIWd~~--~~~~~~ 241 (480)
T KOG0271|consen 189 GQQ------------------IGRALRGHKKWITALAWEPLHL-------VPPCRRLASSSKDGSVRIWDTK--LGTCVR 241 (480)
T ss_pred CCc------------------ccccccCcccceeEEeeccccc-------CCCccceecccCCCCEEEEEcc--CceEEE
Confidence 885 4567999999999999987433 3888899999999999999965 667788
Q ss_pred eecccccceEEEecC-CCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe------------------------
Q 001042 878 TLKGHTRTVRAINSD-RGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML------------------------ 932 (1178)
Q Consensus 878 ~l~~h~~~V~~~s~d-~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~------------------------ 932 (1178)
.+.||+.+|+|+... ..++++|+.|++|++|+...|++.+.+++|...|+.++.+
T Consensus 242 ~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~ 321 (480)
T KOG0271|consen 242 TLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQ 321 (480)
T ss_pred EeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHH
Confidence 999999999999776 5689999999999999999999999999999999999875
Q ss_pred -------------CCCeEEEEeCCCeEEEEeCCCC-eEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce
Q 001042 933 -------------SGERVLTASHDGTVKMWDVRTD-TCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQ 998 (1178)
Q Consensus 933 -------------~~~~l~sgs~dg~V~iwd~~~~-~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~ 998 (1178)
.+..+++|+.|+++.+|+.... +++..+.+|..-|+.+.||||++++|+++-|..|++||.++|+.
T Consensus 322 ~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~ 401 (480)
T KOG0271|consen 322 KKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKF 401 (480)
T ss_pred HHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcch
Confidence 1235999999999999997654 57888889999999999999999999999999999999999999
Q ss_pred EEEEecCCccEEEEEEcCC--EEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEE
Q 001042 999 MHKFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWE 1074 (1178)
Q Consensus 999 ~~~~~~~~~~v~~l~~~~~--~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd 1074 (1178)
+.++++|-+.|..++|+.+ .+++||.|.++++||+++.+....+.+|.+.|.++.|+|||..+++|+.|..+++|.
T Consensus 402 lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 402 LASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred hhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 9999999999999999655 999999999999999999999999999999999999999999999999999999994
No 7
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.1e-38 Score=356.67 Aligned_cols=399 Identities=16% Similarity=0.272 Sum_probs=322.6
Q ss_pred cccCcc-cc-cCCCCC--CCCCCCCC----------CcccccCCcceEEEEecCCCCcccccccc-eeecccccccCCCC
Q 001042 739 QSSLSN-GM-PSPLSK--DATNDDQQ----------PAEASGIGRSWVQSMFSREASSRSHSFSR-VRKWTSDAANENGT 803 (1178)
Q Consensus 739 ~~~~~~-~~-fSP~g~--~~~~~~~~----------~~~~~gh~~~i~~~aFSpdg~~las~~~d-I~vWd~~~~~~~~~ 803 (1178)
++-.+| ++ .||+|. .+.++.|. .++...-.+++-++.|||||+++|.|.+. +.||...+.....
T Consensus 53 e~~~NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~fk~~v~~i~fSPng~~fav~~gn~lqiw~~P~~~~~~- 131 (893)
T KOG0291|consen 53 ETRYNITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRFNFKRGVGAIKFSPNGKFFAVGCGNLLQIWHAPGEIKNE- 131 (893)
T ss_pred ecCCceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEEeecCccceEEECCCCcEEEEEecceeEEEecCcchhcc-
Confidence 344456 66 799998 33333332 22223445788899999999999999999 9999977544211
Q ss_pred CCCCCCCcCCcccccceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccc
Q 001042 804 PRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHT 883 (1178)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~ 883 (1178)
-......+++.||-..|+++.|+ .|.++|++||.|.++++|+++....-....+.+|.
T Consensus 132 ----------~~pFvl~r~~~g~fddi~si~Ws------------~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHk 189 (893)
T KOG0291|consen 132 ----------FNPFVLHRTYLGHFDDITSIDWS------------DDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHK 189 (893)
T ss_pred ----------cCcceEeeeecCCccceeEEEec------------cCCceEEeccccceEEEEEeccccccceEeccCCC
Confidence 01112567889999999999998 89999999999999999999855555567899999
Q ss_pred cceEE--EecCCCEEEEEeCCCcEEEEECCC-----------------------CcE-----EE------Ee--------
Q 001042 884 RTVRA--INSDRGKVVSGSDDQSVLVWDKQT-----------------------SQL-----LE------EL-------- 919 (1178)
Q Consensus 884 ~~V~~--~s~d~~~l~sgs~dg~I~iwd~~t-----------------------~~~-----~~------~l-------- 919 (1178)
..|.+ |..+...+++.+.||.+.+|.... ++. .. -+
T Consensus 190 d~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvt 269 (893)
T KOG0291|consen 190 DYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVT 269 (893)
T ss_pred cceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeeccccccee
Confidence 99984 377888899999999999997650 110 00 00
Q ss_pred ----------------------------------cCCCCceEEEEEe-CCCeEEEEeCC-CeEEEEeCCCCeEEEEecCC
Q 001042 920 ----------------------------------KGHDAQVSCVRML-SGERVLTASHD-GTVKMWDVRTDTCVATVGRC 963 (1178)
Q Consensus 920 ----------------------------------~~h~~~V~~l~~~-~~~~l~sgs~d-g~V~iwd~~~~~~~~~~~~~ 963 (1178)
.-...+|..+.|+ .|+.++.|+.. |.+-+|+..+..-+...++|
T Consensus 270 aa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH 349 (893)
T KOG0291|consen 270 AAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGH 349 (893)
T ss_pred eeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecccc
Confidence 0011334555665 57777777654 88999999998888888999
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEE--cCCEEEEEeCCCcEEEEEcCCCeeeeE
Q 001042 964 SSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM--DRDTVITGSDDWTARMWSISRGTCDAV 1041 (1178)
Q Consensus 964 ~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~ 1041 (1178)
...+++++++|||+++++|+.||.|++||..++-|..++..|+..|+.+.| .++.+++.+.||+|+.||+...+..++
T Consensus 350 ~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRT 429 (893)
T KOG0291|consen 350 SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRT 429 (893)
T ss_pred ccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeee
Confidence 999999999999999999999999999999999999999999999999999 678999999999999999999999999
Q ss_pred eccC-CCcEEEEEEecCCCEEEEEeCCC-cEEEEECCCCceEEEEEecccCCcEEE--EecCCCEEEEEeCCCcEEEEEc
Q 001042 1042 LACH-AGPVQCVEYSSSDRGIITGSSDG-LLRFWENDDGGIKCVKNVTIHSSAILS--INAGDHWLGIGAADNSMSLFHR 1117 (1178)
Q Consensus 1042 ~~~h-~~~I~~l~~spdg~~L~sgs~Dg-~I~iwd~~~~~~~~~~~~~~h~~~i~~--is~dg~~Lasgs~Dg~I~iwd~ 1117 (1178)
+... .-...|++.+|.|..+++|+.|. .|.+|++.+| +.+..+.||.++|.+ ++|+++.||+||+|.+|++||+
T Consensus 430 ft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG--qllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~i 507 (893)
T KOG0291|consen 430 FTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG--QLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDI 507 (893)
T ss_pred ecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC--eeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEe
Confidence 8753 34577899999999999999876 5999999999 788889999999986 5899999999999999999998
Q ss_pred CCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001042 1118 PQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATIN 1177 (1178)
Q Consensus 1118 ~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~tg 1177 (1178)
-.. .+ ... .-.+...+.+++|+|||+.||+++.||.|.+||+..+
T Consensus 508 f~s-------~~-------~vE-tl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~ 552 (893)
T KOG0291|consen 508 FSS-------SG-------TVE-TLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEA 552 (893)
T ss_pred ecc-------Cc-------eee-eEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhc
Confidence 632 11 111 1234567999999999999999999999999999865
No 8
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.8e-37 Score=348.79 Aligned_cols=386 Identities=19% Similarity=0.314 Sum_probs=308.7
Q ss_pred cccccCCcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeecc
Q 001042 762 AEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKR 839 (1178)
Q Consensus 762 ~~~~gh~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~ 839 (1178)
.+..||-..++++.||.|.+++++|+.| +|+|+++..+. -....+.||++.|.+.-|.
T Consensus 139 r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~-----------------~~~~~l~gHkd~VvacfF~--- 198 (893)
T KOG0291|consen 139 RTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKN-----------------LFTYALNGHKDYVVACFFG--- 198 (893)
T ss_pred eeecCCccceeEEEeccCCceEEeccccceEEEEEeccccc-----------------cceEeccCCCcceEEEEec---
Confidence 4568999999999999999999999999 99999986552 1367899999999999887
Q ss_pred ceeccccccCCCCEEEEEeCCCcEEEEcCCCC----------------------Cce-----ee-----Eee--------
Q 001042 840 EVWDLVGDREDAGFFISGSTDCLVKIWDPSLR----------------------GSE-----LR-----ATL-------- 879 (1178)
Q Consensus 840 ~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~----------------------~~~-----~~-----~~l-------- 879 (1178)
.|...+.|.+.||.+.+|..+.. +.+ .. .-+
T Consensus 199 ---------~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvt 269 (893)
T KOG0291|consen 199 ---------ANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVT 269 (893)
T ss_pred ---------cCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeeccccccee
Confidence 77888999999999999976510 000 00 000
Q ss_pred --cccc--------------------------------cceE--EEecCCCEEEEEeCC-CcEEEEECCCCcEEEEecCC
Q 001042 880 --KGHT--------------------------------RTVR--AINSDRGKVVSGSDD-QSVLVWDKQTSQLLEELKGH 922 (1178)
Q Consensus 880 --~~h~--------------------------------~~V~--~~s~d~~~l~sgs~d-g~I~iwd~~t~~~~~~l~~h 922 (1178)
..|. ..|. +++..|+++|.|+.. |.+-||++++...+...++|
T Consensus 270 aa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH 349 (893)
T KOG0291|consen 270 AAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGH 349 (893)
T ss_pred eeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecccc
Confidence 0111 1122 234558888888765 89999999999999999999
Q ss_pred CCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEE
Q 001042 923 DAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHK 1001 (1178)
Q Consensus 923 ~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~ 1001 (1178)
...+++++++ ||..+++|+.||.|++||..+|-|..++..|.+.|+.+.|+..|+.+++.+-||+|+.||+...+..++
T Consensus 350 ~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRT 429 (893)
T KOG0291|consen 350 SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRT 429 (893)
T ss_pred ccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeee
Confidence 9999999999 889999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred EecCC-ccEEEEEEc--CCEEEEEeCCC-cEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 001042 1002 FLGHT-KWIRSIRMD--RDTVITGSDDW-TARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDD 1077 (1178)
Q Consensus 1002 ~~~~~-~~v~~l~~~--~~~l~sgs~dg-~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~ 1077 (1178)
+.... ....|++.+ |..+++|+.|. .|.+|++++|+.+..+.+|.++|.+++|+|+|..|++||.|.+|++||+-.
T Consensus 430 ft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~ 509 (893)
T KOG0291|consen 430 FTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFS 509 (893)
T ss_pred ecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeec
Confidence 86543 356678876 66888888776 499999999999999999999999999999999999999999999999875
Q ss_pred CceEEEEEec-ccCCcEEEEecCCCEEEEEeCCCcEEEEEcCCCccccccCC-----CCCccceeEeeccCCCcccEEEE
Q 001042 1078 GGIKCVKNVT-IHSSAILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGT-----GSKMSGWQLYRTPQKTVAVVRCI 1151 (1178)
Q Consensus 1078 ~~~~~~~~~~-~h~~~i~~is~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~-----g~~~~~~~~~~~~~~h~~~V~~l 1151 (1178)
.. ..+.++. .|...-.+++|+|+-||+++-||.|.+||+........... +.+...-.............+.+
T Consensus 510 s~-~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti 588 (893)
T KOG0291|consen 510 SS-GTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTI 588 (893)
T ss_pred cC-ceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEE
Confidence 42 2223332 23333455689999999999999999999976433211100 11111111222223445679999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCC
Q 001042 1152 ASDLERKRICSGGRNGLLRLWEATIN 1177 (1178)
Q Consensus 1152 afspdg~~Las~s~Dg~V~IWdv~tg 1177 (1178)
++|+||+.|++||....|++|++.++
T Consensus 589 ~ySaDG~~IlAgG~sn~iCiY~v~~~ 614 (893)
T KOG0291|consen 589 CYSADGKCILAGGESNSICIYDVPEG 614 (893)
T ss_pred EEcCCCCEEEecCCcccEEEEECchh
Confidence 99999999999999999999999876
No 9
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.7e-39 Score=345.78 Aligned_cols=277 Identities=23% Similarity=0.377 Sum_probs=261.5
Q ss_pred CCcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceecc
Q 001042 767 IGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDL 844 (1178)
Q Consensus 767 h~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~ 844 (1178)
..+++..+.||+|++.+|+|+-+ ++||++.+.. .+++|.||++.|.++.|+|.
T Consensus 174 d~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~-------------------~~~~l~gH~~~v~~~~fhP~------ 228 (459)
T KOG0272|consen 174 DTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCN-------------------LLQTLRGHTSRVGAAVFHPV------ 228 (459)
T ss_pred CCCcceeeEeecCCCeEEEeecCCceeEeecCCcc-------------------eeEEEeccccceeeEEEccC------
Confidence 35789999999999999999988 9999999876 78999999999999999962
Q ss_pred ccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceE--EEecCCCEEEEEeCCCcEEEEECCCCcEEEEecCC
Q 001042 845 VGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGH 922 (1178)
Q Consensus 845 ~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~--~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h 922 (1178)
.++..+|||+.||++++|+++ +...+..+.+|...|. +|+|+|++|+|++.|.+-++||+.++..+....||
T Consensus 229 ----~~~~~lat~s~Dgtvklw~~~--~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGH 302 (459)
T KOG0272|consen 229 ----DSDLNLATASADGTVKLWKLS--QETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGH 302 (459)
T ss_pred ----CCccceeeeccCCceeeeccC--CCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhccc
Confidence 147799999999999999976 5577889999999888 57999999999999999999999999999889999
Q ss_pred CCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEE
Q 001042 923 DAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHK 1001 (1178)
Q Consensus 923 ~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~ 1001 (1178)
...|.+++|. +|..+++|+.|..-+|||+++|+++..+.+|..+|.+++|+|+|..+|+|+.|++++|||++..+.+.+
T Consensus 303 s~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ 382 (459)
T KOG0272|consen 303 SKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYT 382 (459)
T ss_pred ccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccccccee
Confidence 9999999999 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCccEEEEEEcC---CEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEE
Q 001042 1002 FLGHTKWIRSIRMDR---DTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWE 1074 (1178)
Q Consensus 1002 ~~~~~~~v~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd 1074 (1178)
+.+|.+-|+.+.+++ .+|++++.|+++++|...++.+++++.||.+.|.++.+++++..+++++.|.++++|.
T Consensus 383 ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 383 IPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 999999999999964 4999999999999999999999999999999999999999999999999999999995
No 10
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.3e-38 Score=356.32 Aligned_cols=364 Identities=19% Similarity=0.347 Sum_probs=308.4
Q ss_pred CCcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceecc
Q 001042 767 IGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDL 844 (1178)
Q Consensus 767 h~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~ 844 (1178)
|.++++-++|+|.|.++|+|+.| ++|||+..+. +.+.|+||.|.|.++.|+|.
T Consensus 104 He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~-------------------~th~fkG~gGvVssl~F~~~------ 158 (775)
T KOG0319|consen 104 HEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGY-------------------CTHSFKGHGGVVSSLLFHPH------ 158 (775)
T ss_pred cCCCeEEEEEcCCCceEEeccccceEEEEEeeCCE-------------------EEEEecCCCceEEEEEeCCc------
Confidence 89999999999999999999999 9999999887 99999999999999999963
Q ss_pred ccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEE--ecCCCEEEEEeCCCcEEEEECCCCcEE------
Q 001042 845 VGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQLL------ 916 (1178)
Q Consensus 845 ~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~--s~d~~~l~sgs~dg~I~iwd~~t~~~~------ 916 (1178)
.....|++|+.|+++++||+.. ...+...+..|.+.|+++ ++|+..+++++.|..+.+||+.+.+..
T Consensus 159 ----~~~~lL~sg~~D~~v~vwnl~~-~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~y 233 (775)
T KOG0319|consen 159 ----WNRWLLASGATDGTVRVWNLND-KRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLY 233 (775)
T ss_pred ----cchhheeecCCCceEEEEEccc-CchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechh
Confidence 3446799999999999999873 333567788898888854 678888888888888888876321110
Q ss_pred --------------------------------------------------------------------------------
Q 001042 917 -------------------------------------------------------------------------------- 916 (1178)
Q Consensus 917 -------------------------------------------------------------------------------- 916 (1178)
T Consensus 234 e~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l 313 (775)
T KOG0319|consen 234 ESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDEL 313 (775)
T ss_pred hheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEcccc
Confidence
Q ss_pred ---EEecCCCCceEEEEEe--CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 001042 917 ---EELKGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIW 991 (1178)
Q Consensus 917 ---~~l~~h~~~V~~l~~~--~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lw 991 (1178)
+.+-|..+.|.+++|- ..+++++++..+.+++|+..+..+. .+.+|...|.++....+|-+|++|+.|.++++|
T Consensus 314 ~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilW 392 (775)
T KOG0319|consen 314 TIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILW 392 (775)
T ss_pred EEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEE
Confidence 0111233456677776 4678999999999999999888776 778999999999977788899999999999999
Q ss_pred ECCCC----ceEEEEecCCccEEEEEEc---CCEEEEEeCCCcEEEEEcCCCee---------eeEeccCCCcEEEEEEe
Q 001042 992 DIRAG----RQMHKFLGHTKWIRSIRMD---RDTVITGSDDWTARMWSISRGTC---------DAVLACHAGPVQCVEYS 1055 (1178)
Q Consensus 992 D~~~~----~~~~~~~~~~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~---------~~~~~~h~~~I~~l~~s 1055 (1178)
.++++ .++....+|.+.|.+++.+ ...++++|.|+++++|++...+. ..+...|...|++++++
T Consensus 393 r~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia 472 (775)
T KOG0319|consen 393 RLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIA 472 (775)
T ss_pred EecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEec
Confidence 87443 2455667999999999984 34999999999999999976221 12334699999999999
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE--ecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCcc
Q 001042 1056 SSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMS 1133 (1178)
Q Consensus 1056 pdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~ 1133 (1178)
|+.+.++|||.|.+.++|++... .....+.||...++++ ++.++.+|++|.|++|+||.+.+.
T Consensus 473 ~ndkLiAT~SqDktaKiW~le~~--~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f------------- 537 (775)
T KOG0319|consen 473 PNDKLIATGSQDKTAKIWDLEQL--RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF------------- 537 (775)
T ss_pred CCCceEEecccccceeeecccCc--eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc-------------
Confidence 99999999999999999999966 7888999999999888 678889999999999999999843
Q ss_pred ceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 001042 1134 GWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATINI 1178 (1178)
Q Consensus 1134 ~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~tg~ 1178 (1178)
.+++++.||...|..+.|-.+|+.|+||+.||.|++|+++|+.
T Consensus 538 --SClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~e 580 (775)
T KOG0319|consen 538 --SCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNE 580 (775)
T ss_pred --eeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchh
Confidence 8999999999999999999999999999999999999999873
No 11
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=7.4e-39 Score=342.45 Aligned_cols=269 Identities=23% Similarity=0.397 Sum_probs=255.7
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEeCC---CeEEEEeCCCeEEEEeCCCCeEEEEecCCC
Q 001042 888 AINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSG---ERVLTASHDGTVKMWDVRTDTCVATVGRCS 964 (1178)
Q Consensus 888 ~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~~~---~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~ 964 (1178)
.++.|++.++||+.+|.+++|+..+...+.++.+|...|.++.|++. ..+++|+.||++++|++.+...+..+.+|.
T Consensus 182 ~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~ 261 (459)
T KOG0272|consen 182 SFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHL 261 (459)
T ss_pred EeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcch
Confidence 57999999999999999999999999999999999999999999944 479999999999999999999999999999
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEE--cCCEEEEEeCCCcEEEEEcCCCeeeeEe
Q 001042 965 SAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM--DRDTVITGSDDWTARMWSISRGTCDAVL 1042 (1178)
Q Consensus 965 ~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~ 1042 (1178)
..|..++|+|+|++|++++.|.+-++||++++..+....+|...|.+++| +|..+++|+.|..-+|||+++|.++..+
T Consensus 262 ~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L 341 (459)
T KOG0272|consen 262 ARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFL 341 (459)
T ss_pred hhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEe
Confidence 99999999999999999999999999999999999889999999999999 6679999999999999999999999999
Q ss_pred ccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE--ec-CCCEEEEEeCCCcEEEEEcCC
Q 001042 1043 ACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI--NA-GDHWLGIGAADNSMSLFHRPQ 1119 (1178)
Q Consensus 1043 ~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~-dg~~Lasgs~Dg~I~iwd~~~ 1119 (1178)
.+|..+|.+++|+|+|-.|||||.|++++|||++.. ..+..+.+|.+-|..+ +| .|.+|++++.|++++||...
T Consensus 342 ~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r--~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~- 418 (459)
T KOG0272|consen 342 AGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR--SELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTR- 418 (459)
T ss_pred cccccceeeEeECCCceEEeecCCCCcEEEeeeccc--ccceecccccchhhheEecccCCeEEEEcccCcceeeecCC-
Confidence 999999999999999999999999999999999987 6688999999999766 66 78999999999999999976
Q ss_pred CccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001042 1120 ERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWE 1173 (1178)
Q Consensus 1120 ~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWd 1173 (1178)
.|.+++.+.||.+.|-+++.++|+..++|++.|.++++|.
T Consensus 419 --------------~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 419 --------------TWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred --------------CcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 4589999999999999999999999999999999999995
No 12
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1e-35 Score=325.59 Aligned_cols=333 Identities=19% Similarity=0.307 Sum_probs=279.9
Q ss_pred cceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEE--ecCCCE
Q 001042 818 SNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDRGK 895 (1178)
Q Consensus 818 ~~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~--s~d~~~ 895 (1178)
+.+..+.||+..|++++|-| ...-.++||++|++|.+++ ....+...++..|..-|.|+ +|||.+
T Consensus 138 ~SvGei~GhSr~ins~~~Kp-----------sRPfRi~T~sdDn~v~ffe--GPPFKFk~s~r~HskFV~~VRysPDG~~ 204 (603)
T KOG0318|consen 138 NSVGEITGHSRRINSVDFKP-----------SRPFRIATGSDDNTVAFFE--GPPFKFKSSFREHSKFVNCVRYSPDGSR 204 (603)
T ss_pred CccceeeccceeEeeeeccC-----------CCceEEEeccCCCeEEEee--CCCeeeeecccccccceeeEEECCCCCe
Confidence 46677899999999999975 3345799999999999998 44567778888999999975 999999
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEec---CCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEe-----------
Q 001042 896 VVSGSDDQSVLVWDKQTSQLLEELK---GHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATV----------- 960 (1178)
Q Consensus 896 l~sgs~dg~I~iwd~~t~~~~~~l~---~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~----------- 960 (1178)
+++++.||++.+||-.+|+.+..+. +|.+.|.+++|+ ++.++++++.|.++++||+.++++++++
T Consensus 205 Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqv 284 (603)
T KOG0318|consen 205 FATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQV 284 (603)
T ss_pred EEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEE
Confidence 9999999999999999999999998 899999999999 8899999999999999998766544332
Q ss_pred --------------------------------cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEE-ecCCc
Q 001042 961 --------------------------------GRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKF-LGHTK 1007 (1178)
Q Consensus 961 --------------------------------~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~-~~~~~ 1007 (1178)
.+|...|+++..++++.+|++|+.||.|.-||..++..-+.. ++|..
T Consensus 285 G~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~n 364 (603)
T KOG0318|consen 285 GCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTN 364 (603)
T ss_pred EEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccc
Confidence 467889999999999999999999999999999988776554 67999
Q ss_pred cEEEEEEcC-CEEEEEeCCCcEEEEEcCCCee-------------------------------eeEeccCC--------C
Q 001042 1008 WIRSIRMDR-DTVITGSDDWTARMWSISRGTC-------------------------------DAVLACHA--------G 1047 (1178)
Q Consensus 1008 ~v~~l~~~~-~~l~sgs~dg~I~iwd~~~~~~-------------------------------~~~~~~h~--------~ 1047 (1178)
.|.+++... +.+++.+.|.++++.++..+.. +..++.+. -
T Consensus 365 qI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y 444 (603)
T KOG0318|consen 365 QIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGY 444 (603)
T ss_pred eEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeecccc
Confidence 999999876 7899999999999997643110 00111111 2
Q ss_pred cEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE--ecCCCEEEEEeCCCcEEEEEcCCCccccc
Q 001042 1048 PVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGF 1125 (1178)
Q Consensus 1048 ~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~dg~~Lasgs~Dg~I~iwd~~~~~~~~~ 1125 (1178)
...+++++|++..++.|+.||.|++|.+..+..........|.+.++++ |||+.+||+|...+.+.+||+.++..
T Consensus 445 ~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~--- 521 (603)
T KOG0318|consen 445 ESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV--- 521 (603)
T ss_pred ccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce---
Confidence 3568999999999999999999999999987665565667799988777 89999999999999999999986531
Q ss_pred cCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001042 1126 SGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATIN 1177 (1178)
Q Consensus 1126 ~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~tg 1177 (1178)
. .....-|.+.|.+++|+|+.+++|||+.|.+|.||+++..
T Consensus 522 -----~------~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP 562 (603)
T KOG0318|consen 522 -----K------TNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKP 562 (603)
T ss_pred -----e------cceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccCh
Confidence 1 1122348999999999999999999999999999999753
No 13
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=7.2e-36 Score=305.78 Aligned_cols=282 Identities=25% Similarity=0.412 Sum_probs=256.1
Q ss_pred ceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceE--EEecCCCEE
Q 001042 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKV 896 (1178)
Q Consensus 819 ~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~--~~s~d~~~l 896 (1178)
..++|+||.+.|.++.|+ +|+++++++|.||.+.|||.-+.++ .+.+.-....|. +++|.|+.+
T Consensus 47 ~rr~LkGH~~Ki~~~~ws------------~Dsr~ivSaSqDGklIvWDs~TtnK--~haipl~s~WVMtCA~sPSg~~V 112 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWS------------TDSRRIVSASQDGKLIVWDSFTTNK--VHAIPLPSSWVMTCAYSPSGNFV 112 (343)
T ss_pred eEEEecccccceeeeEec------------CCcCeEEeeccCCeEEEEEcccccc--eeEEecCceeEEEEEECCCCCeE
Confidence 348899999999999998 8999999999999999999653333 344444556666 579999999
Q ss_pred EEEeCCCcEEEEECCCC------cEEEEecCCCCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEE
Q 001042 897 VSGSDDQSVLVWDKQTS------QLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCM 970 (1178)
Q Consensus 897 ~sgs~dg~I~iwd~~t~------~~~~~l~~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l 970 (1178)
|+|+-|+...||++.+. +..+.+.+|.+.+.|+.|.++.+|++++.|.+..+||+++|+.+..+.+|.+.|.++
T Consensus 113 AcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~sl 192 (343)
T KOG0286|consen 113 ACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSL 192 (343)
T ss_pred EecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEE
Confidence 99999999999999865 345678999999999999999999999999999999999999999999999999999
Q ss_pred EEeC-CCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEE--cCCEEEEEeCCCcEEEEEcCCCeeeeEeccC--
Q 001042 971 EYDD-STGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM--DRDTVITGSDDWTARMWSISRGTCDAVLACH-- 1045 (1178)
Q Consensus 971 ~~sp-~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h-- 1045 (1178)
+++| +++.+++|+.|+..++||++.+.+++.|.+|...|+++.| ++.-+++|++|++.++||++..+.+..+...
T Consensus 193 sl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~ 272 (343)
T KOG0286|consen 193 SLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSI 272 (343)
T ss_pred ecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcc
Confidence 9999 9999999999999999999999999999999999999999 5569999999999999999999988888732
Q ss_pred CCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE--ecCCCEEEEEeCCCcEEEEE
Q 001042 1046 AGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFH 1116 (1178)
Q Consensus 1046 ~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~dg~~Lasgs~Dg~I~iwd 1116 (1178)
..+|++++||..|++|.+|..|.++.+||.-.+ +.+..+.+|.++|.++ +|||..+++||+|.+++||.
T Consensus 273 ~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~--e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 273 ICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG--ERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cCCceeEEEcccccEEEeeecCCceeEeecccc--ceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 357999999999999999999999999999888 6777888999999887 79999999999999999994
No 14
>KOG2127 consensus Calmodulin-binding protein CRAG, contains DENN domain [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-37 Score=373.08 Aligned_cols=343 Identities=27% Similarity=0.398 Sum_probs=256.4
Q ss_pred eeEEeCCCCCCCCCCCcchHHHhccCChhhHHHHHHHHhccccEEEEeCCcchHHHHHHHHHHcccccCCCceeecccch
Q 001042 189 LLSVEAPPKEGLPHADISFQPLVQLLDVDNLITLFTAVLLERRILLRSNKYSLLTLVSEAICHLIYPFRWQHVYIPLLFF 268 (1178)
Q Consensus 189 ~~~~~~p~~~~lp~~~~~~~~l~~~l~~~~~l~l~~~~L~E~~il~~s~~~~~ls~~~~al~~ll~Pf~w~~~~IP~lP~ 268 (1178)
.+.+..|....+|+.+..+..++++||++|+|+++.++|+|+||+|+|..+.+|+.++||++++||||+|||+|||++|.
T Consensus 5 ~i~l~~~~ds~lp~~~a~~~~~l~~l~~e~~l~~ll~~lteqkil~hslr~~~lt~v~e~~~s~~fp~~wq~pyip~~pl 84 (1020)
T KOG2127|consen 5 NILLPQPADSPLPLSGADLHLLLQCLGPENVLQLLLLALTEQKILIHSLRPALLTAVAEAFVALLFPFHWQCPYIPLCPL 84 (1020)
T ss_pred cccccCccCCCCCcCcchHHHHHHhhChHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhcccceecCCccccccc
Confidence 44566889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCcceEEeecCCCCccccCCCcEEEEEcCCCeeeCCC-----CCCCCCchhhhhhHHHHHHhcCCCccccccc
Q 001042 269 SGVDYIDAPTPYMMGLHSGVDTSNLAMDGVVVVDLEYNRICTTE-----EIPPIPEPELSSLRGDILKLLYPNVVGIDRM 343 (1178)
Q Consensus 269 ~l~~~l~aP~P~iiGv~~~~~~~~~~~~~~~~vdlD~~~i~~~~-----~~~~lP~~~~~~l~~~l~~~l~~~~~~~~~~ 343 (1178)
.|+|+|+||+|||||+|+.+.....+++||+++|||+|+|...+ +.+.+|......|++++......--...+..
T Consensus 85 ~la~vl~aP~pf~~g~~s~~f~~~~pp~dv~~~dldt~~i~~~~~~~~~s~~~lp~~~a~~l~~~l~~l~~~l~~~y~s~ 164 (1020)
T KOG2127|consen 85 GLADVLHAPLPFLMGVDSRYFELYDPPDDVTCIDLDTNTISYSESTDDLSPPDLPKRAAKTLIQTLTSLQLHLDLHYAST 164 (1020)
T ss_pred hhcccccCCcccccCCChhhhhccCCCccceEEecCCCceeeeeccccCCcccCchhHHHHHHHHHHHHHhhhhcccccc
Confidence 99999999999999999997666688899999999999999874 3577788888888888776553321111111
Q ss_pred CCCCCCcccccccCCCCchhhhHHHHHHHHHHHHHHHhhHHhccccCCccCcChHHHhcccccCCCCCCchHHHHHHHHh
Q 001042 344 NAGGSSEHYSKVCSKPWGEEHDLQLRFIFLKFLASILGGYRNFIENTGTQVFNAQAFLKKRSRSTNQPPDPMITQFLDSQ 423 (1178)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~ir~~Fl~~~~~ll~~y~~~l~~~~~~~F~~~~Fl~~~~~~~~~~~~~F~~~f~~tq 423 (1178)
. ..............+...++.+|+++|++|++++|.|||+|++ .+...++.++||++|.+. +.+||+++.+||
T Consensus 165 ~-~~~~l~~~~~~~~l~~~~le~~iq~afl~f~asil~g~r~~l~-~~a~~~~~~~fL~sR~~s----~~~fy~~~~~Tq 238 (1020)
T KOG2127|consen 165 N-SSTDLDFGIADRRLRRQKLECEIQQAFLQFMASILRGYRNFLR-EGATDVNLEGFLRSRDRS----SHKFYKQVLKTQ 238 (1020)
T ss_pred c-cccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhh-cccccCChHHHHhhcchh----hhhHHHhcchhH
Confidence 1 1111111122222245568899999999999999999999998 555667799999999988 559999999999
Q ss_pred hHHHHHHcccCCCCCchh------HHHHHHHHhccCCCcee-ecCC------CCCCCCccccCCCCCCCCCCCcceeccC
Q 001042 424 GFLDYLERGLGSDENNSN------LLDKLQDAIGRGQNPTS-ILPS------SSAEPEVITISDPDIGTSGLGAKYTYDR 490 (1178)
Q Consensus 424 ~F~~Fie~~~~~~~~~~~------~~~~~~~~~~~~e~~~~-~~~~------~~~~p~~~~~~~~~~~~~~~~~~~~y~~ 490 (1178)
||.+|||+|+...+.+.. |.+++.......+.+.. .+.. .+.+|+.... +.+.+..+.|+|+.
T Consensus 239 mf~~fieers~~s~~~~~~~ffd~~~ekv~~~~e~p~~~~~v~~~~~~ts~~~i~~~~~~~~----p~~g~~~~~~~~~~ 314 (1020)
T KOG2127|consen 239 MFHRFIEERSFVSDDNFALMFFDTCSEKVNGMLESPRRPTVVQLEERKTSHLHITPPRMVAS----PNGGGSTMAYIYGC 314 (1020)
T ss_pred HHHHHHHHHhcccchHhHhhhHHHHHHHHcccccCCccCcceeeccccccceeccchhhccC----CCCCCCchhhhhcc
Confidence 999999999976544322 56665544443322222 2211 1444543332 56677899999999
Q ss_pred CCcccchhhHHHHhhhhhh-ccCCCcccCCCCCCCcccccccCccccCChHHHHHhhhc
Q 001042 491 FPSNVRTEEQEEKRRQILA-SASGSFEYSGKLNSPPSMLVSKDSKDSLSPIERAAERDR 548 (1178)
Q Consensus 491 fp~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~r~~~~~~ 548 (1178)
|+. ++.++..-.++...+ +.+. +.++.|..|.. ++++.+..-+++.+++.+
T Consensus 315 F~~-lr~~~~~~~~~ts~~~~~s~---~~~~sp~~~~~---~~~k~~~~~~q~f~~~~~ 366 (1020)
T KOG2127|consen 315 FSH-LRAELLADCGKTSEVLPKSL---VSRSSPSSPDE---RLTKDENGLIQVFASKGS 366 (1020)
T ss_pred cch-hhHHHHHhhccccccccCCc---ccccCcccccc---ccccccccchHHHHhhhh
Confidence 996 444444323333322 1110 01567778876 677778777776666664
No 15
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.2e-36 Score=338.56 Aligned_cols=381 Identities=20% Similarity=0.340 Sum_probs=303.5
Q ss_pred CCCcccccCCcceEEEEecCCCCc--ccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEE
Q 001042 759 QQPAEASGIGRSWVQSMFSREASS--RSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALH 834 (1178)
Q Consensus 759 ~~~~~~~gh~~~i~~~aFSpdg~~--las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~ 834 (1178)
.......||++.|..+.|.|+-++ |++|..| +++||..+... +++++.+|.+.|++++
T Consensus 138 ~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t------------------cl~~~~~H~S~vtsL~ 199 (775)
T KOG0319|consen 138 YCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT------------------CLHTMILHKSAVTSLA 199 (775)
T ss_pred EEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch------------------HHHHHHhhhhheeeee
Confidence 344556788888888899999865 7888888 99999996662 7889999999999999
Q ss_pred eeecc------------ceecc-----------------ccccCC-----CCEEEEEeCCCcEEEEcCCCCC--------
Q 001042 835 CVTKR------------EVWDL-----------------VGDRED-----AGFFISGSTDCLVKIWDPSLRG-------- 872 (1178)
Q Consensus 835 fs~~~------------~~~~~-----------------~~~s~d-----~~~Lasgs~Dg~I~iWd~~~~~-------- 872 (1178)
|++.. .+|++ +..-++ |.++.|+|.+|.+++||.+...
T Consensus 200 ~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~ 279 (775)
T KOG0319|consen 200 FSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQS 279 (775)
T ss_pred eccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccC
Confidence 98432 11111 111111 3355555555555555533100
Q ss_pred --ce-------------------------------eeEeecccccceEEE---ecCCCEEEEEeCCCcEEEEECCCCcEE
Q 001042 873 --SE-------------------------------LRATLKGHTRTVRAI---NSDRGKVVSGSDDQSVLVWDKQTSQLL 916 (1178)
Q Consensus 873 --~~-------------------------------~~~~l~~h~~~V~~~---s~d~~~l~sgs~dg~I~iwd~~t~~~~ 916 (1178)
.+ +.+.+.|..+.|..+ .|+.+++++++..+.+++|+..+..+.
T Consensus 280 ~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ 359 (775)
T KOG0319|consen 280 DSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ 359 (775)
T ss_pred CchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE
Confidence 00 001111222333322 466788999999999999988887775
Q ss_pred EEecCCCCceEEEE-EeCCCeEEEEeCCCeEEEEeCCCCe----EEEEecCCCCCEEEEEEeCCC-CEEEEEeCCCeEEE
Q 001042 917 EELKGHDAQVSCVR-MLSGERVLTASHDGTVKMWDVRTDT----CVATVGRCSSAVLCMEYDDST-GILAAGGRDAVANI 990 (1178)
Q Consensus 917 ~~l~~h~~~V~~l~-~~~~~~l~sgs~dg~V~iwd~~~~~----~~~~~~~~~~~I~~l~~sp~~-~~l~sgs~dg~I~l 990 (1178)
.+.+|+..|.++. |++|..+++|+.|.++++|.++++. ++....+|...|.+++++..+ ..+++++.|+++++
T Consensus 360 -ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~ 438 (775)
T KOG0319|consen 360 -IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKL 438 (775)
T ss_pred -EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEE
Confidence 8899999999999 5578899999999999999875443 455667899999999997744 57899999999999
Q ss_pred EECCCCce-----EE----EEecCCccEEEEEEcCC--EEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCC
Q 001042 991 WDIRAGRQ-----MH----KFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDR 1059 (1178)
Q Consensus 991 wD~~~~~~-----~~----~~~~~~~~v~~l~~~~~--~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~ 1059 (1178)
|++...+. .. ....|...|+++++.++ .+++||.|.+.++|++.......++.+|...|+++.|++..+
T Consensus 439 W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq 518 (775)
T KOG0319|consen 439 WDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQ 518 (775)
T ss_pred ecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccc
Confidence 99976221 11 23579999999999665 999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE--ecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeE
Q 001042 1060 GIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQL 1137 (1178)
Q Consensus 1060 ~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~ 1137 (1178)
.++|+|.|++|+||.+.+. .|++++.||...|... -.+|..|++++.||-|++|++.+. +|
T Consensus 519 ~laT~SgD~TvKIW~is~f--SClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~---------------eC 581 (775)
T KOG0319|consen 519 LLATCSGDKTVKIWSISTF--SCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTN---------------EC 581 (775)
T ss_pred eeEeccCCceEEEEEeccc--eeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccch---------------hh
Confidence 9999999999999999998 9999999999999776 478999999999999999999854 88
Q ss_pred eeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001042 1138 YRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEAT 1175 (1178)
Q Consensus 1138 ~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~ 1175 (1178)
..++.+|.+.|++++-++++.+++||+.||.|.+|.=.
T Consensus 582 ~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~ 619 (775)
T KOG0319|consen 582 EMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDV 619 (775)
T ss_pred hhhhhhccceeEEEeecCccceeEecCCCeEEEEeecC
Confidence 89999999999999999999999999999999999643
No 16
>smart00799 DENN Domain found in a variety of signalling proteins, always encircled by uDENN and dDENN. The DENN domain is found in a variety of signalling proteins involved in Rab-mediated processes or regulation of MAPKs signalling pathways. The DENN domain is always encircled on both sides by more divergent domains, called uDENN (for upstream DENN) and dDENN (for downstream DENN). The function of the DENN domain remains to date unclear, although it appears to represent a good candidate for a GTP/GDP exchange activity.
Probab=100.00 E-value=4.1e-36 Score=309.51 Aligned_cols=180 Identities=43% Similarity=0.731 Sum_probs=161.2
Q ss_pred CCeEEEEEcCCChHHHHHHHHHHHHHHhhccCCCCccHHHHHHhhcccCCCCCCCCceEEeeeccce-eEEeCCCCCCCC
Q 001042 123 ADKCICLVSRSPSFRILRNALEEIYSLCFLSDGSSKPLWDVISHLVSNVPLPTPGKNRVLFAIENCL-LSVEAPPKEGLP 201 (1178)
Q Consensus 123 ~~~~icllS~~p~~~~f~~~L~~i~~~~~~~~~~~~~~~~~i~~~l~~~p~P~~g~~~~~~~~~~~~-~~~~~p~~~~lp 201 (1178)
+|||+|++||+|||++||++|+.+++.... +...++|.++.++. .|+|.||++.+.+.++... ..+.+|....+|
T Consensus 1 ~p~~icilS~~P~~~~f~~~L~~l~~~~~~--~~~~~~e~~~~~~~--~p~P~pg~~~~~~~~~~~~~~~~~~p~~~~lp 76 (183)
T smart00799 1 APKCICILSRLPFFELFRKILNELYRLLPS--SSNLPLELLISLLL--YPVPPPGGSLVLVSLGPGDLIELQRPLDSSLP 76 (183)
T ss_pred CCeEEEEEeCCcHHHHHHHHHHHHHHHHcc--CccchHHHHHHHhC--CCCCcCCCeEEEEEcCCCCcEEEECCCCCCCC
Confidence 489999999999999999999999998763 44678888887765 4789999999888875433 567899999999
Q ss_pred CCCcchHHHhccCChhhHHHHHHHHhccccEEEEeCCcchHHHHHHHHHHcccccCCCceeecccchhhhhhccCCcceE
Q 001042 202 HADISFQPLVQLLDVDNLITLFTAVLLERRILLRSNKYSLLTLVSEAICHLIYPFRWQHVYIPLLFFSGVDYIDAPTPYM 281 (1178)
Q Consensus 202 ~~~~~~~~l~~~l~~~~~l~l~~~~L~E~~il~~s~~~~~ls~~~~al~~ll~Pf~w~~~~IP~lP~~l~~~l~aP~P~i 281 (1178)
..++++..+|++|+++|++.++.++|+|+||||+|++++.|+.+++|+.+|||||+|+|+|||+||.+++|+++||+|||
T Consensus 77 ~~~~~~~~lf~~l~~~~i~~l~~~~LlE~~Ii~~s~~~~~ls~~~~~l~~ll~Pf~w~~~~iP~lp~~l~~~l~aP~P~i 156 (183)
T smart00799 77 LIDFSLHELFECLGVENILQLFAALLLERRIIFTSSNLSTLSAVIEALLALLYPFVWQHIYIPILPASLLDVLSAPTPFI 156 (183)
T ss_pred CCCccHHHHHHhCCHHHHHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHHhCCccCCceEEEECCHHHHHHhcCCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCcc--ccCCCcEEEEEcCCC
Q 001042 282 MGLHSGVDTS--NLAMDGVVVVDLEYN 306 (1178)
Q Consensus 282 iGv~~~~~~~--~~~~~~~~~vdlD~~ 306 (1178)
||++++.... ....+|+++||||+|
T Consensus 157 iGv~~~~~~~~~~~~~~~vv~vDlD~~ 183 (183)
T smart00799 157 IGVHSSYFEEVKELPDEDVVVVDLDTG 183 (183)
T ss_pred EEechhHhHHhhccCCCCEEEEECCCC
Confidence 9999976332 223468999999987
No 17
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.6e-34 Score=312.77 Aligned_cols=333 Identities=23% Similarity=0.344 Sum_probs=284.6
Q ss_pred ccccCCcceEEEEecCCCC-cccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeecc
Q 001042 763 EASGIGRSWVQSMFSREAS-SRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKR 839 (1178)
Q Consensus 763 ~~~gh~~~i~~~aFSpdg~-~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~ 839 (1178)
...+|..+|.+++|+|-.. .+|+++.+ .|+|++.......+.. ....+......+. ..-+..|++++|+
T Consensus 173 kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q----~~lrh~~~~~~~s-~~~nkdVT~L~Wn--- 244 (524)
T KOG0273|consen 173 KVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQ----LVLRHCIREGGKS-VPSNKDVTSLDWN--- 244 (524)
T ss_pred eeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchh----hhhhhhhhhhccc-CCccCCcceEEec---
Confidence 3445999999999999887 89999888 9999987421111000 0000000000000 0124579999997
Q ss_pred ceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEE--ecCCCEEEEEeCCCcEEEEECCCCcEEE
Q 001042 840 EVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQLLE 917 (1178)
Q Consensus 840 ~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~--s~d~~~l~sgs~dg~I~iwd~~t~~~~~ 917 (1178)
.+|.+||+|+.||.+++|+.. +.+..++..|.++|.++ +.+|.+|++++.||++.+||..+|+...
T Consensus 245 ---------~~G~~LatG~~~G~~riw~~~---G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q 312 (524)
T KOG0273|consen 245 ---------NDGTLLATGSEDGEARIWNKD---GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQ 312 (524)
T ss_pred ---------CCCCeEEEeecCcEEEEEecC---chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEE
Confidence 899999999999999999954 66678999999999975 7889999999999999999999999999
Q ss_pred EecCCCCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Q 001042 918 ELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGR 997 (1178)
Q Consensus 918 ~l~~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~ 997 (1178)
.+.-|..+-..+.|-+.+.+++++.||.|+++.+....++.++.+|.+.|.++.|+|.|.+|++++.|+++++|.+....
T Consensus 313 ~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~ 392 (524)
T KOG0273|consen 313 QFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSN 392 (524)
T ss_pred eeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCc
Confidence 99999998889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCccEEEEEEcCC-----------EEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeC
Q 001042 998 QMHKFLGHTKWIRSIRMDRD-----------TVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSS 1066 (1178)
Q Consensus 998 ~~~~~~~~~~~v~~l~~~~~-----------~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~ 1066 (1178)
..+.+.+|...|..+.|+|. .+++++.|++|++||+..+.++.++..|..+|.+++|+|+|+++|+|+.
T Consensus 393 ~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~ 472 (524)
T KOG0273|consen 393 SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSL 472 (524)
T ss_pred chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCC
Confidence 99999999999999999542 7999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEECCCCceEEEEEecccCCcE--EEEecCCCEEEEEeCCCcEEEEEcC
Q 001042 1067 DGLLRFWENDDGGIKCVKNVTIHSSAI--LSINAGDHWLGIGAADNSMSLFHRP 1118 (1178)
Q Consensus 1067 Dg~I~iwd~~~~~~~~~~~~~~h~~~i--~~is~dg~~Lasgs~Dg~I~iwd~~ 1118 (1178)
||.|.+|+..++ ..++...+.. .| .+++.+|+.|..+-.|+.+++.|+.
T Consensus 473 dg~V~iws~~~~--~l~~s~~~~~-~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 473 DGCVHIWSTKTG--KLVKSYQGTG-GIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CCeeEeccccch--heeEeecCCC-eEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 999999999998 6666665443 35 4457899999999999999999874
No 18
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.1e-33 Score=306.22 Aligned_cols=367 Identities=17% Similarity=0.275 Sum_probs=298.8
Q ss_pred ccCCcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeecccee
Q 001042 765 SGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVW 842 (1178)
Q Consensus 765 ~gh~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~ 842 (1178)
..|...++-..|||.|-++|||... |||||....+. - ....++.-.++|..|+|.
T Consensus 56 tEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~h--------------i---LKnef~v~aG~I~Di~Wd------ 112 (603)
T KOG0318|consen 56 TEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEH--------------I---LKNEFQVLAGPIKDISWD------ 112 (603)
T ss_pred ccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcce--------------e---eeeeeeecccccccceeC------
Confidence 3454555555899999999999776 99999886431 0 223455667899999997
Q ss_pred ccccccCCCCEEEEEeCC----CcEEEEcCCCCCceeeEeecccccceEEEe--cC-CCEEEEEeCCCcEEEEECCCCcE
Q 001042 843 DLVGDREDAGFFISGSTD----CLVKIWDPSLRGSELRATLKGHTRTVRAIN--SD-RGKVVSGSDDQSVLVWDKQTSQL 915 (1178)
Q Consensus 843 ~~~~~s~d~~~Lasgs~D----g~I~iWd~~~~~~~~~~~l~~h~~~V~~~s--~d-~~~l~sgs~dg~I~iwd~~t~~~ 915 (1178)
.|++.+++.++. |.+.+||. +...-.+.||...|.+++ |. .-++++|++|++|.+|+-.-.+.
T Consensus 113 ------~ds~RI~avGEGrerfg~~F~~DS----G~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKF 182 (603)
T KOG0318|consen 113 ------FDSKRIAAVGEGRERFGHVFLWDS----GNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKF 182 (603)
T ss_pred ------CCCcEEEEEecCccceeEEEEecC----CCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeee
Confidence 888888877653 56788983 334577899999999764 33 44699999999999999877788
Q ss_pred EEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEec---CCCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 001042 916 LEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVG---RCSSAVLCMEYDDSTGILAAGGRDAVANIW 991 (1178)
Q Consensus 916 ~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~---~~~~~I~~l~~sp~~~~l~sgs~dg~I~lw 991 (1178)
..++..|..-|.|+.|+ +|..+++++.||++.+||-.+|+.+..+. .|.+.|.+++|+||+..+++++.|.++++|
T Consensus 183 k~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIW 262 (603)
T KOG0318|consen 183 KSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIW 262 (603)
T ss_pred eecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEE
Confidence 88899999999999999 89999999999999999999999999987 799999999999999999999999999999
Q ss_pred ECCCCceEEEEecCC---ccEEEEEEcCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCC
Q 001042 992 DIRAGRQMHKFLGHT---KWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDG 1068 (1178)
Q Consensus 992 D~~~~~~~~~~~~~~---~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg 1068 (1178)
|+.+.++++++.... +.-..+-|..+.|++.+.+|+|.+++...+..+..+.+|...|+++..++++++|++|+.||
T Consensus 263 dVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG 342 (603)
T KOG0318|consen 263 DVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDG 342 (603)
T ss_pred EeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCc
Confidence 999999998875433 23344556788999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEECCCCceEEE---------EE--------------------e---------------------------------
Q 001042 1069 LLRFWENDDGGIKCV---------KN--------------------V--------------------------------- 1086 (1178)
Q Consensus 1069 ~I~iwd~~~~~~~~~---------~~--------------------~--------------------------------- 1086 (1178)
.|.-|+..+|....+ .. .
T Consensus 343 ~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv 422 (603)
T KOG0318|consen 343 HINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVV 422 (603)
T ss_pred eEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEE
Confidence 999999875421000 00 0
Q ss_pred ---------c----------ccCCcEEEEecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCccc
Q 001042 1087 ---------T----------IHSSAILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAV 1147 (1178)
Q Consensus 1087 ---------~----------~h~~~i~~is~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~ 1147 (1178)
+ +-.....+++|+++.+|+|+.||.|+||.+....+ ........|.++
T Consensus 423 ~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l-------------~ee~~~~~h~a~ 489 (603)
T KOG0318|consen 423 ACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDEL-------------KEEAKLLEHRAA 489 (603)
T ss_pred EecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcc-------------cceeeeecccCC
Confidence 0 00111234467888999999999999999864321 222234579999
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001042 1148 VRCIASDLERKRICSGGRNGLLRLWEATIN 1177 (1178)
Q Consensus 1148 V~~lafspdg~~Las~s~Dg~V~IWdv~tg 1177 (1178)
|+++++|||+.+||+|+..+.|.+||+.+.
T Consensus 490 iT~vaySpd~~yla~~Da~rkvv~yd~~s~ 519 (603)
T KOG0318|consen 490 ITDVAYSPDGAYLAAGDASRKVVLYDVASR 519 (603)
T ss_pred ceEEEECCCCcEEEEeccCCcEEEEEcccC
Confidence 999999999999999999999999999875
No 19
>PF02141 DENN: DENN (AEX-3) domain; InterPro: IPR001194 The human serine- and leucine-rich DENN protein possesses a RGD cellular adhesion motif and a leucine-zipper-like motif associated with protein dimerization, and shows partial homology to the receptor binding domain of tumor necrosis factor alpha. DENN is virtually identical to MADD, a human MAP kinase-activating death domain protein that interacts with type I tumor necrosis factor receptor. DENN displays significant homology to Rab3 GEP, a rat GDP/GTP exchange protein specific for Rab3 small G proteins implicated in intracellular vesicle trafficking. DENN also exhibits strong similarity to Caenorhabditis elegans AEX-3, which interacts with Rab3 to regulate synaptic vesicle release []. The DENN domain is always encircled on both sides by more divergent domains, known as uDENN (IPR005113 from INTERPRO) and dDENN (IPR005112 from INTERPRO), which could play a key role in DENN function.; PDB: 3TW8_A.
Probab=100.00 E-value=1.1e-36 Score=318.05 Aligned_cols=183 Identities=45% Similarity=0.775 Sum_probs=129.5
Q ss_pred cCCeEEEEEcCCChHHHHHHHHHHHHHHhhccCCCCccHHHHHHhhcccCCCCCCCCceEEee-eccceeEEeCCCCCCC
Q 001042 122 FADKCICLVSRSPSFRILRNALEEIYSLCFLSDGSSKPLWDVISHLVSNVPLPTPGKNRVLFA-IENCLLSVEAPPKEGL 200 (1178)
Q Consensus 122 ~~~~~icllS~~p~~~~f~~~L~~i~~~~~~~~~~~~~~~~~i~~~l~~~p~P~~g~~~~~~~-~~~~~~~~~~p~~~~l 200 (1178)
|+|+|+|++||+|||++|+++|..+++...... ..++++++.+++..+|+|.+|...+... ..+..+.+..|....+
T Consensus 1 y~p~~~clvS~~p~~~~f~~~L~~i~~~~~~~~--~~~l~~~i~~~~~~~~~P~~g~~~~~~~~~~~~~~~~~~p~~~~l 78 (185)
T PF02141_consen 1 YVPKAICLVSRYPFFDLFREILKIIYNLYKSSR--INPLEQFISNLLYSIPLPPPGSTIVFFSPFKNEKIIFQRPSNNDL 78 (185)
T ss_dssp ----EEEEEESS--HHHHHHHHHHHHHHHHTT---HHHHHHHHHH-HHHS----TT-B--------------B---SSS-
T ss_pred CCceEEEEECCCcHHHHHHHHHHHHHHHHhcCc--hhHHHHHHHHHHhcCCCCCCCcceeeecccccccccccCCCccCC
Confidence 789999999999999999999999999876432 3789999999999999999998877654 3556677888999999
Q ss_pred CCCCcchHHHhccCChhhHHHHHHHHhccccEEEEeCCcchHHHHHHHHHHcccccCCCceeecccchhhhhhccCCcce
Q 001042 201 PHADISFQPLVQLLDVDNLITLFTAVLLERRILLRSNKYSLLTLVSEAICHLIYPFRWQHVYIPLLFFSGVDYIDAPTPY 280 (1178)
Q Consensus 201 p~~~~~~~~l~~~l~~~~~l~l~~~~L~E~~il~~s~~~~~ls~~~~al~~ll~Pf~w~~~~IP~lP~~l~~~l~aP~P~ 280 (1178)
|..++++..||++|+++++++++.++|+|+||+|+|++++.||.+++|+.+|||||+|+|+|||+||.+++|+|+||+||
T Consensus 79 p~~~~~~~~lf~~l~~~~i~~l~~~lL~E~~Ii~~S~~~~~ls~~~~~l~~ll~Pf~w~~~~ip~LP~~l~~~l~aP~P~ 158 (185)
T PF02141_consen 79 PLSDFSLSPLFSCLSIDNILKLFSALLLERRIIFVSSNLSLLSSCVEALLSLLYPFQWQHVYIPVLPPSLLDYLEAPTPF 158 (185)
T ss_dssp --TSHHHHHHHHHS-HHHHHHHHHHHTTT-EEEEEES-HHHHHHHHHHHHHTTTTS---SEEESS--GGGGGGGG-SS-E
T ss_pred CccccchhHHHhcCCHHHHHHHHHHHHHhCCEEEEeCchhhHHHHHHHHHHHccCcccCceEEeecCHHHHhhcCCCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCc-cccCCCcEEEEEcCCC
Q 001042 281 MMGLHSGVDT-SNLAMDGVVVVDLEYN 306 (1178)
Q Consensus 281 iiGv~~~~~~-~~~~~~~~~~vdlD~~ 306 (1178)
|||++++... .....+|+++||||+|
T Consensus 159 iiGv~~~~~~~~~~~~~~~v~VDLD~n 185 (185)
T PF02141_consen 159 IIGVHSSFFEILIDPPDDVVIVDLDTN 185 (185)
T ss_dssp EEEEECCCHHHHCS---S-EEEETTTT
T ss_pred EEEEechhhhhhcCCCCCEEEEECCCC
Confidence 9999998755 5566789999999997
No 20
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.2e-33 Score=287.64 Aligned_cols=283 Identities=22% Similarity=0.394 Sum_probs=253.1
Q ss_pred eeEeecccccceEEE--ecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeC
Q 001042 875 LRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDV 951 (1178)
Q Consensus 875 ~~~~l~~h~~~V~~~--s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~ 951 (1178)
..++++||...|.++ ++|++++++++.||.+.|||.-+...+..++-...+|...+|+ +++.+++|+.|+...||++
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l 126 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL 126 (343)
T ss_pred eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence 348899999999975 7999999999999999999999999999999899999999999 6888999999999999999
Q ss_pred CCC------eEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEc---CCEEEEE
Q 001042 952 RTD------TCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMD---RDTVITG 1022 (1178)
Q Consensus 952 ~~~------~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~---~~~l~sg 1022 (1178)
.+. ...+.+.+|.+.+.|+.|-+| ..|++++.|.+..+||+++++.+..+.+|.+.|.++++. ++.+++|
T Consensus 127 s~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg 205 (343)
T KOG0286|consen 127 STRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSG 205 (343)
T ss_pred ccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEec
Confidence 865 345678899999999999885 458899999999999999999999999999999999985 4699999
Q ss_pred eCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE--ecCC
Q 001042 1023 SDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI--NAGD 1100 (1178)
Q Consensus 1023 s~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~dg 1100 (1178)
+.|+..++||++.+.+++++.+|.+.|+++.|.|+|.-+++|+.|++.++||++......+..-......|+++ |..|
T Consensus 206 ~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SG 285 (343)
T KOG0286|consen 206 GCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSG 285 (343)
T ss_pred ccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccc
Confidence 99999999999999999999999999999999999999999999999999999998434444333334455554 7899
Q ss_pred CEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001042 1101 HWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWE 1173 (1178)
Q Consensus 1101 ~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWd 1173 (1178)
++|.+|..|.++.+||.-.+ +....+.||...|+++..+|||.-++||+.|.++|||.
T Consensus 286 RlLfagy~d~~c~vWDtlk~---------------e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 286 RLLFAGYDDFTCNVWDTLKG---------------ERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cEEEeeecCCceeEeecccc---------------ceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 99999999999999998633 55666789999999999999999999999999999994
No 21
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.5e-33 Score=316.59 Aligned_cols=366 Identities=21% Similarity=0.354 Sum_probs=316.7
Q ss_pred CCCcccccCCcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEee
Q 001042 759 QQPAEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCV 836 (1178)
Q Consensus 759 ~~~~~~~gh~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs 836 (1178)
.-+++..||...|.++.|+.+|..+|||+.| |.+||+-... -+..++||...|+..-|.
T Consensus 98 ~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~-------------------Gl~rL~GHkd~iT~~~F~ 158 (888)
T KOG0306|consen 98 EILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEE-------------------GLFRLRGHKDSITQALFL 158 (888)
T ss_pred ceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccce-------------------eeEEeecchHHHhHHhcc
Confidence 4566778999999999999999999999999 9999998766 678899999999999887
Q ss_pred eccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEEeCCCcEEEEECCC----
Q 001042 837 TKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQT---- 912 (1178)
Q Consensus 837 ~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sgs~dg~I~iwd~~t---- 912 (1178)
.+.+++++.|.|+.|++||++ .+.+..+.-.|.+.++++.-+++.+++++.|+.+++|++..
T Consensus 159 ------------~~~~~lvS~sKDs~iK~WdL~--tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~ 224 (888)
T KOG0306|consen 159 ------------NGDSFLVSVSKDSMIKFWDLE--TQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDE 224 (888)
T ss_pred ------------CCCeEEEEeccCceEEEEecc--cceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeeccccc
Confidence 678999999999999999987 66777888899999999888889999999999999997710
Q ss_pred --------------------C-----------c-----------------------------------------------
Q 001042 913 --------------------S-----------Q----------------------------------------------- 914 (1178)
Q Consensus 913 --------------------~-----------~----------------------------------------------- 914 (1178)
+ +
T Consensus 225 ~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~ 304 (888)
T KOG0306|consen 225 KETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVE 304 (888)
T ss_pred ccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchh
Confidence 0 0
Q ss_pred ------------------------------E------------------------------EEEecCCCCceEEEEEeCC
Q 001042 915 ------------------------------L------------------------------LEELKGHDAQVSCVRMLSG 934 (1178)
Q Consensus 915 ------------------------------~------------------------------~~~l~~h~~~V~~l~~~~~ 934 (1178)
. .-.+.+|...|.+++++++
T Consensus 305 ~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d 384 (888)
T KOG0306|consen 305 KSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSD 384 (888)
T ss_pred hhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecC
Confidence 0 0012346667788888877
Q ss_pred CeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEE
Q 001042 935 ERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM 1014 (1178)
Q Consensus 935 ~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~ 1014 (1178)
+.++..+..+.+++|+..+.++++++... .+.+..|-|.++++++|+..|.+.+||+.+...+.+.++|.+.+++++.
T Consensus 385 ~~~~~Sga~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~ 462 (888)
T KOG0306|consen 385 SILLASGAGESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISL 462 (888)
T ss_pred ceeeeecCCCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeee
Confidence 77777777899999999999999998653 8899999999999999999999999999999999999999999999988
Q ss_pred --cCCEEEEEeCCCcEEEEEcCC-----C-----------------------------e--------------------e
Q 001042 1015 --DRDTVITGSDDWTARMWSISR-----G-----------------------------T--------------------C 1038 (1178)
Q Consensus 1015 --~~~~l~sgs~dg~I~iwd~~~-----~-----------------------------~--------------------~ 1038 (1178)
++..+++||.|.+|++||..- | + .
T Consensus 463 ~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKF 542 (888)
T KOG0306|consen 463 SPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKF 542 (888)
T ss_pred cCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceee
Confidence 455899999999999998531 0 0 0
Q ss_pred eeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE--ecCCCEEEEEeCCCcEEEEE
Q 001042 1039 DAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFH 1116 (1178)
Q Consensus 1039 ~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~dg~~Lasgs~Dg~I~iwd 1116 (1178)
.-++-||.-||.|+..|||++.++|||.|.+|++|-++-| .|.+.+-+|...|+++ -|....+.++|.|+.|+-||
T Consensus 543 flsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG--DCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWD 620 (888)
T KOG0306|consen 543 FLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG--DCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWD 620 (888)
T ss_pred eeeecccccceeEEeccCCcCeEEeccCCCceEEeccccc--hhhhhhhcccCceeEEEEcccceeEEEecCcceEEeec
Confidence 1123479999999999999999999999999999999999 8999999999999888 58899999999999999999
Q ss_pred cCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001042 1117 RPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATI 1176 (1178)
Q Consensus 1117 ~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~t 1176 (1178)
-.. ++.+..+.+|...|+|++.+|+|.+++|+|.|.+|++|.-+.
T Consensus 621 g~k---------------Fe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 621 GEK---------------FEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred hhh---------------hhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 762 377888999999999999999999999999999999998754
No 22
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-32 Score=278.94 Aligned_cols=294 Identities=21% Similarity=0.386 Sum_probs=244.8
Q ss_pred CceeeEeecccccceEEE--ec-CCCEEEEEeCCCcEEEEECC-----CCcEEEEecCCCCceEEEEEe-CCCeEEEEeC
Q 001042 872 GSELRATLKGHTRTVRAI--NS-DRGKVVSGSDDQSVLVWDKQ-----TSQLLEELKGHDAQVSCVRML-SGERVLTASH 942 (1178)
Q Consensus 872 ~~~~~~~l~~h~~~V~~~--s~-d~~~l~sgs~dg~I~iwd~~-----t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~ 942 (1178)
...+..++++|++.|+++ .+ +.+.+++++.|.++.+|++. .|..++.+.||...|..+..+ ++++.++++.
T Consensus 4 ~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~sw 83 (315)
T KOG0279|consen 4 QLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASW 83 (315)
T ss_pred hheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccc
Confidence 345567899999999976 33 46789999999999999875 467889999999999999998 8999999999
Q ss_pred CCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecC-CccEEEEEEcCC----
Q 001042 943 DGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGH-TKWIRSIRMDRD---- 1017 (1178)
Q Consensus 943 dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~-~~~v~~l~~~~~---- 1017 (1178)
|+++++||+.+++..+.+.+|...|.++++++|.+.+++|+.|.+|++|++............ .++|.|+.|+|+
T Consensus 84 D~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p 163 (315)
T KOG0279|consen 84 DGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNP 163 (315)
T ss_pred cceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCc
Confidence 999999999999999999999999999999999999999999999999998765444433332 789999999776
Q ss_pred EEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE-
Q 001042 1018 TVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI- 1096 (1178)
Q Consensus 1018 ~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i- 1096 (1178)
++++++.|++|++||+++.+....+.+|.+.++.+++||||...++|+.||.+.+||++.+ +++..+ .|...|.++
T Consensus 164 ~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~--k~lysl-~a~~~v~sl~ 240 (315)
T KOG0279|consen 164 IIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG--KNLYSL-EAFDIVNSLC 240 (315)
T ss_pred EEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCC--ceeEec-cCCCeEeeEE
Confidence 8999999999999999999999999999999999999999999999999999999999998 555555 466666554
Q ss_pred -ecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEee-ccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001042 1097 -NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYR-TPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEA 1174 (1178)
Q Consensus 1097 -s~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~-~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv 1174 (1178)
+|+.-+|+.+. +..|+|||+.++.......- +... ..+.......+++|++||..|.+|-.|+.|++|.+
T Consensus 241 fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~-------d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv 312 (315)
T KOG0279|consen 241 FSPNRYWLCAAT-ATSIKIWDLESKAVVEELKL-------DGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQV 312 (315)
T ss_pred ecCCceeEeecc-CCceEEEeccchhhhhhccc-------cccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEe
Confidence 78877777665 45699999986543211100 0000 12222345678999999999999999999999998
Q ss_pred CC
Q 001042 1175 TI 1176 (1178)
Q Consensus 1175 ~t 1176 (1178)
..
T Consensus 313 ~~ 314 (315)
T KOG0279|consen 313 AK 314 (315)
T ss_pred ec
Confidence 64
No 23
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.2e-32 Score=298.32 Aligned_cols=326 Identities=18% Similarity=0.371 Sum_probs=278.7
Q ss_pred ceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCce------eeEee--cc----cccce
Q 001042 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSE------LRATL--KG----HTRTV 886 (1178)
Q Consensus 819 ~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~------~~~~l--~~----h~~~V 886 (1178)
.......|+.+|.+.+|+| -+...+++|+.|-+.++|++...... +.+.. .+ .+..|
T Consensus 170 ~~~kvl~~~~~V~~~~WnP-----------~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdV 238 (524)
T KOG0273|consen 170 SKAKVLRHESEVFICAWNP-----------LRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDV 238 (524)
T ss_pred cceeeccCCCceEEEecCc-----------hhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCc
Confidence 3333444999999999985 34558999999999999998631111 11111 11 12345
Q ss_pred EE--EecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCC
Q 001042 887 RA--INSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRC 963 (1178)
Q Consensus 887 ~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~ 963 (1178)
++ |+.+|..||+|+.||.+++|+.. |..+.++..|.++|.++.|+ .|++|++++.||++.+||..+|...+.+..|
T Consensus 239 T~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~ 317 (524)
T KOG0273|consen 239 TSLDWNNDGTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFH 317 (524)
T ss_pred ceEEecCCCCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeec
Confidence 54 57779999999999999999965 77788999999999999999 8999999999999999999999999999888
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCeeeeE
Q 001042 964 SSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMD--RDTVITGSDDWTARMWSISRGTCDAV 1041 (1178)
Q Consensus 964 ~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~ 1041 (1178)
..+-..+.|-.+. .+++.+.||.|+++.+....++.++.+|.+.|.++.|+ +..|+++|.|++++||+.....+...
T Consensus 318 s~~~lDVdW~~~~-~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~ 396 (524)
T KOG0273|consen 318 SAPALDVDWQSND-EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHD 396 (524)
T ss_pred cCCccceEEecCc-eEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhh
Confidence 8887888887554 58888999999999999999999999999999999998 56999999999999999999999999
Q ss_pred eccCCCcEEEEEEecCC---------CEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE--ecCCCEEEEEeCCC
Q 001042 1042 LACHAGPVQCVEYSSSD---------RGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADN 1110 (1178)
Q Consensus 1042 ~~~h~~~I~~l~~spdg---------~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~dg~~Lasgs~Dg 1110 (1178)
+.+|...|..+.|+|+| ..+++++.|++|++||+..+ .++..+..|..+|.++ +|+|+++|+|+.||
T Consensus 397 l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g--v~i~~f~kH~~pVysvafS~~g~ylAsGs~dg 474 (524)
T KOG0273|consen 397 LQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG--VPIHTLMKHQEPVYSVAFSPNGRYLASGSLDG 474 (524)
T ss_pred hhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC--ceeEeeccCCCceEEEEecCCCcEEEecCCCC
Confidence 99999999999999965 46899999999999999999 8889999999999887 79999999999999
Q ss_pred cEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001042 1111 SMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEAT 1175 (1178)
Q Consensus 1111 ~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~ 1175 (1178)
.|.+|+.+.+ ++++...+ .+.|..++|+.+|..|..+-.||.+++-|+.
T Consensus 475 ~V~iws~~~~---------------~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 475 CVHIWSTKTG---------------KLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred eeEeccccch---------------heeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 9999999854 44444443 3459999999999999999999999998874
No 24
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-32 Score=279.52 Aligned_cols=285 Identities=19% Similarity=0.353 Sum_probs=242.9
Q ss_pred ceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCc---eeeEeecccccceEE--EecCC
Q 001042 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGS---ELRATLKGHTRTVRA--INSDR 893 (1178)
Q Consensus 819 ~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~---~~~~~l~~h~~~V~~--~s~d~ 893 (1178)
...+++||++.|+.++..+ .+.+.+++++.|.++.+|++..... ...+.+.||+..|.. +++||
T Consensus 7 l~~tl~gh~d~Vt~la~~~-----------~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg 75 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKI-----------KNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDG 75 (315)
T ss_pred eeeeecCCCceEEEEEeec-----------CCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCC
Confidence 4568999999999999874 4578999999999999999874433 347889999999985 58999
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCC-CCCEEEEE
Q 001042 894 GKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRC-SSAVLCME 971 (1178)
Q Consensus 894 ~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~-~~~I~~l~ 971 (1178)
++.++++.|+++++||+.+|+..+.+.+|...|.+++++ ++..+++|+.|.+|++||+..+......... .+.|.|+.
T Consensus 76 ~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvr 155 (315)
T KOG0279|consen 76 NFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVR 155 (315)
T ss_pred ceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEE
Confidence 999999999999999999999999999999999999999 7889999999999999998755544443333 78999999
Q ss_pred EeCC--CCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCeeeeEeccCCC
Q 001042 972 YDDS--TGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMD--RDTVITGSDDWTARMWSISRGTCDAVLACHAG 1047 (1178)
Q Consensus 972 ~sp~--~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~ 1047 (1178)
|+|+ ..+|++++.|+++++||+++.+....+.+|++.++.++++ |...++|+.||.+.+||++.++.+..+. |..
T Consensus 156 fsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~ 234 (315)
T KOG0279|consen 156 FSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFD 234 (315)
T ss_pred EcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCC
Confidence 9997 7899999999999999999999999999999999999984 5599999999999999999999988876 788
Q ss_pred cEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEec----cc---CCcEE----EEecCCCEEEEEeCCCcEEEEE
Q 001042 1048 PVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVT----IH---SSAIL----SINAGDHWLGIGAADNSMSLFH 1116 (1178)
Q Consensus 1048 ~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~----~h---~~~i~----~is~dg~~Lasgs~Dg~I~iwd 1116 (1178)
.|.+++|+|+.-.|+.+. +..|+|||+.++ .++..+. +. ...+. +++.||..|.+|-.|+.|++|.
T Consensus 235 ~v~sl~fspnrywL~~at-~~sIkIwdl~~~--~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 235 IVNSLCFSPNRYWLCAAT-ATSIKIWDLESK--AVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred eEeeEEecCCceeEeecc-CCceEEEeccch--hhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 999999999877666664 556999999987 3333221 11 11222 3378999999999999999998
Q ss_pred cC
Q 001042 1117 RP 1118 (1178)
Q Consensus 1117 ~~ 1118 (1178)
+.
T Consensus 312 v~ 313 (315)
T KOG0279|consen 312 VA 313 (315)
T ss_pred ee
Confidence 74
No 25
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.1e-32 Score=276.13 Aligned_cols=271 Identities=16% Similarity=0.308 Sum_probs=237.9
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCe--EEEEecCCCCCEEEE
Q 001042 893 RGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDT--CVATVGRCSSAVLCM 970 (1178)
Q Consensus 893 ~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~--~~~~~~~~~~~I~~l 970 (1178)
.-+|++++.|.+|++|...+|.+..+++...+.|+.+...++...+++...-.|++||++++. ++.++.+|...|+++
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEE
Confidence 347899999999999999999999999988899999999965555555556789999999875 588999999999999
Q ss_pred EEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEcCC--EEEEEeCCCcEEEEEcCCCeeeeEecc-CCC
Q 001042 971 EYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRGTCDAVLAC-HAG 1047 (1178)
Q Consensus 971 ~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~--~l~sgs~dg~I~iwd~~~~~~~~~~~~-h~~ 1047 (1178)
.|..+|+++++|+.||+++|||++...+.+.+ .+..+|+++..+++ .|++|..+|.|++||+....+...+.. ...
T Consensus 90 gF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~ 168 (311)
T KOG0315|consen 90 GFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT 168 (311)
T ss_pred EEeecCeEEEecCCCceEEEEeccCcccchhc-cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence 99999999999999999999999996665555 56799999999776 899999999999999998877666543 346
Q ss_pred cEEEEEEecCCCEEEEEeCCCcEEEEECCCC----ceEEEEEecccCCcEEEE--ecCCCEEEEEeCCCcEEEEEcCCCc
Q 001042 1048 PVQCVEYSSSDRGIITGSSDGLLRFWENDDG----GIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQER 1121 (1178)
Q Consensus 1048 ~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~----~~~~~~~~~~h~~~i~~i--s~dg~~Lasgs~Dg~I~iwd~~~~~ 1121 (1178)
.|.++...|||.+++.+...|..++|++-++ .+.++..++.|..-++.. |||+++||++|.|.+++||+.++.
T Consensus 169 ~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~- 247 (311)
T KOG0315|consen 169 SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF- 247 (311)
T ss_pred ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-
Confidence 8999999999999999999999999998765 346677788999888665 999999999999999999998732
Q ss_pred cccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 001042 1122 LGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATINI 1178 (1178)
Q Consensus 1122 ~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~tg~ 1178 (1178)
++....+.+|..++++.+||.||++|++|+.|+.+++|++.+|+
T Consensus 248 -------------~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 248 -------------FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGK 291 (311)
T ss_pred -------------eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCc
Confidence 25566778999999999999999999999999999999999875
No 26
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.9e-32 Score=288.72 Aligned_cols=324 Identities=18% Similarity=0.284 Sum_probs=280.4
Q ss_pred CCCCcccccCCcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEe
Q 001042 758 DQQPAEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHC 835 (1178)
Q Consensus 758 ~~~~~~~~gh~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~f 835 (1178)
+-......+|..++.+++.+|+.+++|+|+.| -.+|+..++. ....+.||...|+++.|
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge-------------------~~~eltgHKDSVt~~~F 114 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE-------------------FAGELTGHKDSVTCCSF 114 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc-------------------ceeEecCCCCceEEEEE
Confidence 34455678999999999999999999999998 9999999988 57789999999999999
Q ss_pred eeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccce-E-EEecCCCEEEEEeCCCcEEEEECCCC
Q 001042 836 VTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTV-R-AINSDRGKVVSGSDDQSVLVWDKQTS 913 (1178)
Q Consensus 836 s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V-~-~~s~d~~~l~sgs~dg~I~iwd~~t~ 913 (1178)
+ .||.+||||+-+|.|+||+.+.+ .....+......+ + +++|.+..|++|+.||.+.+|.+.++
T Consensus 115 s------------hdgtlLATGdmsG~v~v~~~stg--~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~ 180 (399)
T KOG0296|consen 115 S------------HDGTLLATGDMSGKVLVFKVSTG--GEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ 180 (399)
T ss_pred c------------cCceEEEecCCCccEEEEEcccC--ceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCc
Confidence 8 89999999999999999998732 2333333222222 2 67999999999999999999999998
Q ss_pred cEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCC-CCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 001042 914 QLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRC-SSAVLCMEYDDSTGILAAGGRDAVANIW 991 (1178)
Q Consensus 914 ~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~-~~~I~~l~~sp~~~~l~sgs~dg~I~lw 991 (1178)
...+.+.+|+.++++=.|. +|++++++..||+|++||..+++++..+... .....++.++..+..++.|+.++.+++-
T Consensus 181 ~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~ 260 (399)
T KOG0296|consen 181 ALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGV 260 (399)
T ss_pred ceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEE
Confidence 8889999999999999998 8999999999999999999999998888643 3457889999999999999999999999
Q ss_pred ECCCCceEEEEe--------cCCccEEEEEE---cCC--EEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCC
Q 001042 992 DIRAGRQMHKFL--------GHTKWIRSIRM---DRD--TVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSD 1058 (1178)
Q Consensus 992 D~~~~~~~~~~~--------~~~~~v~~l~~---~~~--~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg 1058 (1178)
+..+|+.+.... .+...+.|+.+ +.. ..|+|+.||+|.|||+...+...... |..+|+.+.|-+ .
T Consensus 261 ~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~-t 338 (399)
T KOG0296|consen 261 NNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN-T 338 (399)
T ss_pred ccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC-c
Confidence 999999887776 34444445544 333 78999999999999998887766665 888999999998 7
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE--ecCCCEEEEEeCCCcEEEEEcC
Q 001042 1059 RGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRP 1118 (1178)
Q Consensus 1059 ~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~dg~~Lasgs~Dg~I~iwd~~ 1118 (1178)
.+|++++.+|.|+.||.++| +++..+.+|...|.++ +|++++++++|.|++.+||+.+
T Consensus 339 ~~l~t~c~~g~v~~wDaRtG--~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 339 DYLLTACANGKVRQWDARTG--QLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred chheeeccCceEEeeecccc--ceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 89999999999999999999 8889999999999877 7999999999999999999875
No 27
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.9e-33 Score=293.60 Aligned_cols=309 Identities=23% Similarity=0.435 Sum_probs=275.0
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEE--ecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCce
Q 001042 849 EDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQV 926 (1178)
Q Consensus 849 ~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~--s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V 926 (1178)
..+.-++.|.-.+..+.-+.-.....+...+.+|..+|+.+ +|+-..+++++.|++|++||..+|++...+++|.+.+
T Consensus 74 ~~~~el~~g~pt~~~~~~~~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv 153 (406)
T KOG0295|consen 74 ETGDELIAGDPTGSKRTPALWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSV 153 (406)
T ss_pred ccccccccCCCCcCccChhhcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccce
Confidence 33445555554454444332223445667888999999864 8999999999999999999999999999999999999
Q ss_pred EEEEEe-CCCeEEEEeCCCeEEEEeCCC-CeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEec
Q 001042 927 SCVRML-SGERVLTASHDGTVKMWDVRT-DTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLG 1004 (1178)
Q Consensus 927 ~~l~~~-~~~~l~sgs~dg~V~iwd~~~-~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~ 1004 (1178)
.++.|+ .|..+++++.|-.+++||..+ -++++...+|+..|.+++|-|.|.++++++.|.+|+.|++.+|.++.++.+
T Consensus 154 ~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~ 233 (406)
T KOG0295|consen 154 FDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPG 233 (406)
T ss_pred eEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccC
Confidence 999999 789999999999999999977 567778889999999999999999999999999999999999999999999
Q ss_pred CCccEEEEEE--cCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecC---------------CCEEEEEeCC
Q 001042 1005 HTKWIRSIRM--DRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSS---------------DRGIITGSSD 1067 (1178)
Q Consensus 1005 ~~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd---------------g~~L~sgs~D 1067 (1178)
|..+|..+.. ++..+++++.|.++++|-+.++++...+..|.-+|.+++|-|. +.++.+++.|
T Consensus 234 h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrD 313 (406)
T KOG0295|consen 234 HSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRD 313 (406)
T ss_pred chHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeeccc
Confidence 9999999998 4558999999999999999999999999999999999999762 3589999999
Q ss_pred CcEEEEECCCCceEEEEEecccCCcEEEE--ecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCc
Q 001042 1068 GLLRFWENDDGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTV 1145 (1178)
Q Consensus 1068 g~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~ 1145 (1178)
++|++||+.+| .|+.++.+|.++|..+ +|.|+||+++.+|+++++||++++ ++..++..|.
T Consensus 314 ktIk~wdv~tg--~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~---------------~cmk~~~ah~ 376 (406)
T KOG0295|consen 314 KTIKIWDVSTG--MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL---------------QCMKTLEAHE 376 (406)
T ss_pred ceEEEEeccCC--eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc---------------eeeeccCCCc
Confidence 99999999999 9999999999999765 799999999999999999999854 7788888999
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001042 1146 AVVRCIASDLERKRICSGGRNGLLRLWEA 1174 (1178)
Q Consensus 1146 ~~V~~lafspdg~~Las~s~Dg~V~IWdv 1174 (1178)
.-|+++.|+.+..+++||+-|.++++|..
T Consensus 377 hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 377 HFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ceeEEEecCCCCceEEeccccceeeeeec
Confidence 99999999999999999999999999974
No 28
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.8e-34 Score=298.69 Aligned_cols=274 Identities=26% Similarity=0.484 Sum_probs=250.3
Q ss_pred cccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEEeCCCcE
Q 001042 826 HAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSV 905 (1178)
Q Consensus 826 H~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sgs~dg~I 905 (1178)
....|+|+.+ |...+++|..|++|+|||.+ .......+.||++.|.|+..+.+.+++|+.|.+|
T Consensus 196 ~skgVYClQY--------------DD~kiVSGlrDnTikiWD~n--~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTv 259 (499)
T KOG0281|consen 196 NSKGVYCLQY--------------DDEKIVSGLRDNTIKIWDKN--SLECLKILTGHTGSVLCLQYDERVIVSGSSDSTV 259 (499)
T ss_pred cCCceEEEEe--------------cchhhhcccccCceEEeccc--cHHHHHhhhcCCCcEEeeeccceEEEecCCCceE
Confidence 4567999997 57789999999999999965 7778899999999999999999999999999999
Q ss_pred EEEECCCCcEEEEecCCCCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCe---EEEEecCCCCCEEEEEEeCCCCEEEEE
Q 001042 906 LVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDT---CVATVGRCSSAVLCMEYDDSTGILAAG 982 (1178)
Q Consensus 906 ~iwd~~t~~~~~~l~~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~---~~~~~~~~~~~I~~l~~sp~~~~l~sg 982 (1178)
+|||+++|+++.++-+|...|..+.|++ +++++++.|.++.+||+.+.. +.+.+.+|...|+.+.|+. ++++++
T Consensus 260 rvWDv~tge~l~tlihHceaVLhlrf~n-g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsA 336 (499)
T KOG0281|consen 260 RVWDVNTGEPLNTLIHHCEAVLHLRFSN-GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSA 336 (499)
T ss_pred EEEeccCCchhhHHhhhcceeEEEEEeC-CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEe
Confidence 9999999999999999999999999964 579999999999999997754 2345678999999999964 599999
Q ss_pred eCCCeEEEEECCCCceEEEEecCCccEEEEEEcCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEE
Q 001042 983 GRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGII 1062 (1178)
Q Consensus 983 s~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~ 1062 (1178)
+.|.+|++|++.+++.++++.+|...|.|+.+.+..+++|+.|.+|++||+..|.++..+++|..-|.++.|+ .+.++
T Consensus 337 SgDRTikvW~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIV 414 (499)
T KOG0281|consen 337 SGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIV 414 (499)
T ss_pred cCCceEEEEeccceeeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cceee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996 67899
Q ss_pred EEeCCCcEEEEECCCCceE-------EEEEecccCCcEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 001042 1063 TGSSDGLLRFWENDDGGIK-------CVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRPQE 1120 (1178)
Q Consensus 1063 sgs~Dg~I~iwd~~~~~~~-------~~~~~~~h~~~i~~is~dg~~Lasgs~Dg~I~iwd~~~~ 1120 (1178)
+|+.||+|++||+.++... |+.....|++.|..+..|...+++++.|.+|.|||..++
T Consensus 415 SGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 415 SGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred eccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcCCC
Confidence 9999999999999876433 666777899999999999999999999999999998754
No 29
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.6e-33 Score=292.39 Aligned_cols=283 Identities=23% Similarity=0.458 Sum_probs=264.2
Q ss_pred CcccccCCcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeec
Q 001042 761 PAEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTK 838 (1178)
Q Consensus 761 ~~~~~gh~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~ 838 (1178)
+..+.||..+|..+-|.|+-...++++.| |++||..+++ ....++||++.|.+|+|+
T Consensus 101 ~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~-------------------~e~~LrGHt~sv~di~~~-- 159 (406)
T KOG0295|consen 101 VQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGE-------------------LERSLRGHTDSVFDISFD-- 159 (406)
T ss_pred hhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchh-------------------hhhhhhccccceeEEEEe--
Confidence 44567899999999999999999999888 9999999998 788899999999999998
Q ss_pred cceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEE--EecCCCEEEEEeCCCcEEEEECCCCcEE
Q 001042 839 REVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLL 916 (1178)
Q Consensus 839 ~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~ 916 (1178)
..|+++|+++.|-.+++||.+ ...+.++.+.+|...|.+ +-|.|+++++++.|.+|+.|++.+|.++
T Consensus 160 ----------a~Gk~l~tcSsDl~~~LWd~~-~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv 228 (406)
T KOG0295|consen 160 ----------ASGKYLATCSSDLSAKLWDFD-TFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCV 228 (406)
T ss_pred ----------cCccEEEecCCccchhheeHH-HHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeE
Confidence 789999999999999999987 336677888899998886 4789999999999999999999999999
Q ss_pred EEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCC---------------CCEEE
Q 001042 917 EELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDS---------------TGILA 980 (1178)
Q Consensus 917 ~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~---------------~~~l~ 980 (1178)
.++.+|...|..+..+ +|..+++++.|.++++|-+.++++...+..|+-.|.+++|-|. +.++.
T Consensus 229 ~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~ 308 (406)
T KOG0295|consen 229 KTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLG 308 (406)
T ss_pred EeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEE
Confidence 9999999999999999 8999999999999999999999999999999999999999763 25899
Q ss_pred EEeCCCeEEEEECCCCceEEEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCC
Q 001042 981 AGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMD--RDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSD 1058 (1178)
Q Consensus 981 sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg 1058 (1178)
+++.|++|++||+.++.++.++.+|.++|..++|+ |.+|+++.+|+++++||+++++|..++..|..-++++.|+.+.
T Consensus 309 s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~ 388 (406)
T KOG0295|consen 309 SGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTA 388 (406)
T ss_pred eecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCC
Confidence 99999999999999999999999999999999997 6799999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEEC
Q 001042 1059 RGIITGSSDGLLRFWEN 1075 (1178)
Q Consensus 1059 ~~L~sgs~Dg~I~iwd~ 1075 (1178)
.++++|+-|.++++|..
T Consensus 389 p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 389 PYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ceEEeccccceeeeeec
Confidence 99999999999999964
No 30
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=6.9e-32 Score=270.52 Aligned_cols=281 Identities=21% Similarity=0.367 Sum_probs=249.4
Q ss_pred Ccccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceeccccccCCCCEEEEEe
Q 001042 781 SSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGS 858 (1178)
Q Consensus 781 ~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs 858 (1178)
-+|++++.| ||+|...+|. |.+++....+.|+.+... ||++.||+|+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~-------------------C~rTiqh~dsqVNrLeiT------------pdk~~LAaa~ 59 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGI-------------------CSRTIQHPDSQVNRLEIT------------PDKKDLAAAG 59 (311)
T ss_pred eEEEeccCcceeeeeehhcCe-------------------EEEEEecCccceeeEEEc------------CCcchhhhcc
Confidence 478999999 9999999999 999999999999999997 8999999998
Q ss_pred CCCcEEEEcCCCCCceeeEeecccccceEE--EecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCC
Q 001042 859 TDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGE 935 (1178)
Q Consensus 859 ~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~ 935 (1178)
.. .||+||++..+...+.++.+|...|++ |..+|+.+++|++||+++|||++...+.+.++ |..+|+++..+ +..
T Consensus 60 ~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQt 137 (311)
T KOG0315|consen 60 NQ-HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQT 137 (311)
T ss_pred CC-eeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcc
Confidence 65 699999997777789999999999886 57899999999999999999999866655555 77999999999 677
Q ss_pred eEEEEeCCCeEEEEeCCCCeEEEEe-cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC------ceEEEEecCCcc
Q 001042 936 RVLTASHDGTVKMWDVRTDTCVATV-GRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAG------RQMHKFLGHTKW 1008 (1178)
Q Consensus 936 ~l~sgs~dg~V~iwd~~~~~~~~~~-~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~------~~~~~~~~~~~~ 1008 (1178)
.|++|..+|.|++||+.+..+...+ ......|.++...|||.+++.+...|..++|++-+. +++.+++.|.+.
T Consensus 138 eLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~ 217 (311)
T KOG0315|consen 138 ELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGH 217 (311)
T ss_pred eEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccce
Confidence 8999999999999999988776655 345578999999999999999999999999998764 356778899999
Q ss_pred EEEEEEcCC--EEEEEeCCCcEEEEEcCCC-eeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEE
Q 001042 1009 IRSIRMDRD--TVITGSDDWTARMWSISRG-TCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKN 1085 (1178)
Q Consensus 1009 v~~l~~~~~--~l~sgs~dg~I~iwd~~~~-~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~ 1085 (1178)
+..+.++++ +|+++|.|.+++||+.++. +....+.+|..+++.++||.||.||++|+.|+.+++||+..+ +.+..
T Consensus 218 il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~--k~v~q 295 (311)
T KOG0315|consen 218 ILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAG--KEVRQ 295 (311)
T ss_pred EEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccC--ceeee
Confidence 998888654 9999999999999999887 666778899999999999999999999999999999999999 67788
Q ss_pred ecccCCcEEEE
Q 001042 1086 VTIHSSAILSI 1096 (1178)
Q Consensus 1086 ~~~h~~~i~~i 1096 (1178)
..+|.....++
T Consensus 296 y~gh~K~~vc~ 306 (311)
T KOG0315|consen 296 YQGHHKAAVCV 306 (311)
T ss_pred cCCcccccEEE
Confidence 88887776665
No 31
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.5e-31 Score=301.69 Aligned_cols=366 Identities=17% Similarity=0.307 Sum_probs=300.1
Q ss_pred CCcccccCCcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeee
Q 001042 760 QPAEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVT 837 (1178)
Q Consensus 760 ~~~~~~gh~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~ 837 (1178)
+.+...+....+.|+.=+||.-++|+|-.| |++|+..++. ..-++.||..+|+++.|.
T Consensus 57 ~~l~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~-------------------~~~tfngHK~AVt~l~fd- 116 (888)
T KOG0306|consen 57 KKLILLKKKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEE-------------------ILITFNGHKAAVTTLKFD- 116 (888)
T ss_pred hhhhhhcccceEEEeeccCCcceEEEEecCceEEeeccCCCc-------------------eeeeecccccceEEEEEc-
Confidence 444444545678888888999999999998 9999998775 677899999999999997
Q ss_pred ccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEE--EecCCCEEEEEeCCCcEEEEECCCCcE
Q 001042 838 KREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQL 915 (1178)
Q Consensus 838 ~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~ 915 (1178)
..|..|||||.|+.|.+||+- +..-...+.||...|+. |..+.+.+++.+.|+.|++||+++..+
T Consensus 117 -----------~~G~rlaSGskDt~IIvwDlV--~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhC 183 (888)
T KOG0306|consen 117 -----------KIGTRLASGSKDTDIIVWDLV--GEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHC 183 (888)
T ss_pred -----------ccCceEeecCCCccEEEEEec--cceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEeccccee
Confidence 899999999999999999976 56667889999999995 355678999999999999999999999
Q ss_pred EEEecCCCCceEEEEEeCCCeEEEEeCCCeEEEEeCCC------------------------CeEE--------------
Q 001042 916 LEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRT------------------------DTCV-------------- 957 (1178)
Q Consensus 916 ~~~l~~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~------------------------~~~~-------------- 957 (1178)
..+.-.|.+.++.+++.+ +.+++++.|+.+++|++.. ++.+
T Consensus 184 f~Thvd~r~Eiw~l~~~~-~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~ 262 (888)
T KOG0306|consen 184 FETHVDHRGEIWALVLDE-KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQ 262 (888)
T ss_pred eeEEecccceEEEEEEec-ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEe
Confidence 999999999999999976 7899999999999998600 0000
Q ss_pred --------------------------------------------------------------------------------
Q 001042 958 -------------------------------------------------------------------------------- 957 (1178)
Q Consensus 958 -------------------------------------------------------------------------------- 957 (1178)
T Consensus 263 g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~ 342 (888)
T KOG0306|consen 263 GADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLA 342 (888)
T ss_pred cchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEee
Confidence
Q ss_pred ------------------------EEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEE
Q 001042 958 ------------------------ATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIR 1013 (1178)
Q Consensus 958 ------------------------~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~ 1013 (1178)
..+.+|...|.+++++.+...+++| ..+.+++|+..+.++++++... .+.+..
T Consensus 343 nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sg-a~~SikiWn~~t~kciRTi~~~--y~l~~~ 419 (888)
T KOG0306|consen 343 NNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASG-AGESIKIWNRDTLKCIRTITCG--YILASK 419 (888)
T ss_pred cCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeec-CCCcEEEEEccCcceeEEeccc--cEEEEE
Confidence 0011334456667777776666555 4578999999999999998654 666666
Q ss_pred E--cCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCC-----CceEEEEEe
Q 001042 1014 M--DRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDD-----GGIKCVKNV 1086 (1178)
Q Consensus 1014 ~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~-----~~~~~~~~~ 1086 (1178)
| .++++++|...|.+.+||+.+...+.+..+|.+.|++++.+||++.+++||.|.+|++||..- |....+..+
T Consensus 420 Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl 499 (888)
T KOG0306|consen 420 FVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSL 499 (888)
T ss_pred ecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeee
Confidence 6 445999999999999999999999999999999999999999999999999999999999641 211111111
Q ss_pred c-----ccCCcEEEE--ecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCE
Q 001042 1087 T-----IHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKR 1159 (1178)
Q Consensus 1087 ~-----~h~~~i~~i--s~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~ 1159 (1178)
. .-...|.++ ||||++||++--|++++||-+++. +..-.+.||.-+|.|+..|||++.
T Consensus 500 ~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl---------------KFflsLYGHkLPV~smDIS~DSkl 564 (888)
T KOG0306|consen 500 KHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL---------------KFFLSLYGHKLPVLSMDISPDSKL 564 (888)
T ss_pred ccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecce---------------eeeeeecccccceeEEeccCCcCe
Confidence 1 122344554 899999999999999999998743 667788899999999999999999
Q ss_pred EEEEeCCCcEEEEECCCC
Q 001042 1160 ICSGGRNGLLRLWEATIN 1177 (1178)
Q Consensus 1160 Las~s~Dg~V~IWdv~tg 1177 (1178)
++|||.|.+|+||-++-|
T Consensus 565 ivTgSADKnVKiWGLdFG 582 (888)
T KOG0306|consen 565 IVTGSADKNVKIWGLDFG 582 (888)
T ss_pred EEeccCCCceEEeccccc
Confidence 999999999999988754
No 32
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=4.3e-31 Score=278.56 Aligned_cols=327 Identities=18% Similarity=0.254 Sum_probs=282.1
Q ss_pred ccceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEE--EecCCC
Q 001042 817 QSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRG 894 (1178)
Q Consensus 817 ~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~--~s~d~~ 894 (1178)
...+.+|..|++.|.+++.+ |+.+++|||+.|..-.+|++. +++....+.+|...|++ |+.+|.
T Consensus 54 DdS~~tF~~H~~svFavsl~------------P~~~l~aTGGgDD~AflW~~~--~ge~~~eltgHKDSVt~~~Fshdgt 119 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLH------------PNNNLVATGGGDDLAFLWDIS--TGEFAGELTGHKDSVTCCSFSHDGT 119 (399)
T ss_pred ccceeehhhcCCceEEEEeC------------CCCceEEecCCCceEEEEEcc--CCcceeEecCCCCceEEEEEccCce
Confidence 44688999999999999998 889999999999999999976 55578899999999996 589999
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEe
Q 001042 895 KVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYD 973 (1178)
Q Consensus 895 ~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~s 973 (1178)
+||+|+.+|.|+||+..++.....+...-..+.-+.|+ .+..+++|+.||.+.+|.+.++...+.+.+|..++++-.|.
T Consensus 120 lLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~ 199 (399)
T KOG0296|consen 120 LLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFI 199 (399)
T ss_pred EEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCccccccc
Confidence 99999999999999999999988887667778888888 57889999999999999999988888999999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceEEEEecCC-ccEEEEEE--cCCEEEEEeCCCcEEEEEcCCCeeeeEec-------
Q 001042 974 DSTGILAAGGRDAVANIWDIRAGRQMHKFLGHT-KWIRSIRM--DRDTVITGSDDWTARMWSISRGTCDAVLA------- 1043 (1178)
Q Consensus 974 p~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~-~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~------- 1043 (1178)
|+|+.+++|..||+|++||.+++.++.++.+.. ....++.+ .+..++.|+.++.+++-+..+|+.+....
T Consensus 200 pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~ 279 (399)
T KOG0296|consen 200 PDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELK 279 (399)
T ss_pred CCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCcccc
Confidence 999999999999999999999999998886432 34455555 56689999999999999988888777665
Q ss_pred -cCCCcEEEEE---EecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEEecC-CCEEEEEeCCCcEEEEEcC
Q 001042 1044 -CHAGPVQCVE---YSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSINAG-DHWLGIGAADNSMSLFHRP 1118 (1178)
Q Consensus 1044 -~h~~~I~~l~---~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is~d-g~~Lasgs~Dg~I~iwd~~ 1118 (1178)
.+...+.++. ++..-...|+|+.||+|.|||+.... ++..-.|...|+.+-.. ..+|++++.||.|+.||..
T Consensus 280 ~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~---~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaR 356 (399)
T KOG0296|consen 280 PSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST---LRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDAR 356 (399)
T ss_pred ccchhhhhhhhhcccccccchhhcccccceEEEEecccch---hheeccCCCceEEEEEcCcchheeeccCceEEeeecc
Confidence 3444444554 45556678999999999999998863 33334588888888544 4899999999999999998
Q ss_pred CCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001042 1119 QERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEAT 1175 (1178)
Q Consensus 1119 ~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~ 1175 (1178)
+ | ++..+..||...|.+++.+|++++++|+|.|++.+|+++.
T Consensus 357 t---------G------~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 357 T---------G------QLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred c---------c------ceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 4 4 8888999999999999999999999999999999999875
No 33
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=6e-32 Score=283.02 Aligned_cols=291 Identities=24% Similarity=0.419 Sum_probs=258.9
Q ss_pred ceeeEeecccccceEEE--ecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEE
Q 001042 873 SELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMW 949 (1178)
Q Consensus 873 ~~~~~~l~~h~~~V~~~--s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iw 949 (1178)
.++.+.+.+|.+.|.|+ .|.+.++++|+.|++++|||+.+|+...++.||-..|..++++ -..++++++.|+.|+.|
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCw 220 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCW 220 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEE
Confidence 45667889999999976 6889999999999999999999999999999999999999999 57789999999999999
Q ss_pred eCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEc--CCEEEEEeCCCc
Q 001042 950 DVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMD--RDTVITGSDDWT 1027 (1178)
Q Consensus 950 d~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sgs~dg~ 1027 (1178)
|+...+.++.+.+|-+.|.|++.+|.-..|++|+.|.++++||+++...+..+.+|...|.++.+. ...+++||.|++
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~t 300 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDST 300 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCce
Confidence 999999999999999999999999999999999999999999999999999999999999999996 448999999999
Q ss_pred EEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEEe-cCCCEEEEE
Q 001042 1028 ARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSIN-AGDHWLGIG 1106 (1178)
Q Consensus 1028 I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is-~dg~~Lasg 1106 (1178)
|++||++.|+...++..|...|.+++.+|....+++++.|. |+-|++..| ..+..+.+|..-+.+++ .++.++++|
T Consensus 301 vrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g--~f~~nlsgh~~iintl~~nsD~v~~~G 377 (460)
T KOG0285|consen 301 VRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEG--EFLQNLSGHNAIINTLSVNSDGVLVSG 377 (460)
T ss_pred EEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCcc--chhhccccccceeeeeeeccCceEEEc
Confidence 99999999999999999999999999999999999998776 999999998 66777999999999985 456788999
Q ss_pred eCCCcEEEEEcCCCccccccCCCCCccceeEeecc--CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001042 1107 AADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTP--QKTVAVVRCIASDLERKRICSGGRNGLLRLWEAT 1175 (1178)
Q Consensus 1107 s~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~--~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~ 1175 (1178)
+++|.+..||..++...... +....+ ......|.+.+|...|..|+||..|.+|++|.-+
T Consensus 378 ~dng~~~fwdwksg~nyQ~~---------~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 378 GDNGSIMFWDWKSGHNYQRG---------QTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred CCceEEEEEecCcCcccccc---------cccccCCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 99999999999854321111 111111 1234569999999999999999999999999754
No 34
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.2e-33 Score=292.00 Aligned_cols=281 Identities=24% Similarity=0.442 Sum_probs=252.1
Q ss_pred cccceEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEec
Q 001042 882 HTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVG 961 (1178)
Q Consensus 882 h~~~V~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~ 961 (1178)
....|.|+..|...+++|..|++|+|||..+..+...+.||++.|.|+.|. ...+++|+.|.+|++||+++|+++.++-
T Consensus 196 ~skgVYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd-~rviisGSSDsTvrvWDv~tge~l~tli 274 (499)
T KOG0281|consen 196 NSKGVYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD-ERVIVSGSSDSTVRVWDVNTGEPLNTLI 274 (499)
T ss_pred cCCceEEEEecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc-ceEEEecCCCceEEEEeccCCchhhHHh
Confidence 445788999999999999999999999999999999999999999999985 4589999999999999999999999999
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc---eEEEEecCCccEEEEEEcCCEEEEEeCCCcEEEEEcCCCee
Q 001042 962 RCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGR---QMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTC 1038 (1178)
Q Consensus 962 ~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~---~~~~~~~~~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~ 1038 (1178)
+|...|..+.|+ ..++++++.|.++.+||+.... +.+.+.+|...|+.+.|+..++++++.|.+|++|++.++++
T Consensus 275 hHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~ef 352 (499)
T KOG0281|consen 275 HHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEF 352 (499)
T ss_pred hhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEeccceee
Confidence 999999999997 4679999999999999998764 34557899999999999999999999999999999999999
Q ss_pred eeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEEecCCCEEEEEeCCCcEEEEEcC
Q 001042 1039 DAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRP 1118 (1178)
Q Consensus 1039 ~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~Lasgs~Dg~I~iwd~~ 1118 (1178)
+.++.+|...|.|+.+. |+++++|++|.+|++||+..| .++..++||..-|.++-.|.+.+++|+.||+|++||+.
T Consensus 353 vRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G--~cLRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~ 428 (499)
T KOG0281|consen 353 VRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG--ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQ 428 (499)
T ss_pred ehhhhcccccceehhcc--CeEEEecCCCceEEEEecccc--HHHHHHhchHHhhhheeecCceeeeccccceEEEEecc
Confidence 99999999999999885 899999999999999999999 89999999999999999999999999999999999997
Q ss_pred CCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001042 1119 QERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATIN 1177 (1178)
Q Consensus 1119 ~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~tg 1177 (1178)
...- ......--++.++..|++.|-.+.|. ...+++++.|.+|.|||...|
T Consensus 429 aald------pra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 429 AALD------PRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred cccC------CcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcCCC
Confidence 5421 11111224667788899999999985 567999999999999999765
No 35
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.9e-31 Score=273.31 Aligned_cols=278 Identities=23% Similarity=0.397 Sum_probs=246.8
Q ss_pred ccccCCcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccc
Q 001042 763 EASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKRE 840 (1178)
Q Consensus 763 ~~~gh~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~ 840 (1178)
..+||.+.|..+.|+|||.++|+|+.| |.+|++....+ ...+++||+++|..+.|.
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce------------------N~~~lkgHsgAVM~l~~~---- 99 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE------------------NFWVLKGHSGAVMELHGM---- 99 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc------------------ceeeeccccceeEeeeec----
Confidence 357899999999999999999999999 99999887664 667888999999999998
Q ss_pred eeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEEecC---CCEEEEEeCCCcEEEEECCCCcEEE
Q 001042 841 VWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSD---RGKVVSGSDDQSVLVWDKQTSQLLE 917 (1178)
Q Consensus 841 ~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d---~~~l~sgs~dg~I~iwd~~t~~~~~ 917 (1178)
.|+..++++|.|.+|+.||++ .++.....++|...|.++.|. ...+.+|+.||++++||+++...++
T Consensus 100 --------~d~s~i~S~gtDk~v~~wD~~--tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~ 169 (338)
T KOG0265|consen 100 --------RDGSHILSCGTDKTVRGWDAE--TGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIK 169 (338)
T ss_pred --------cCCCEEEEecCCceEEEEecc--cceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhh
Confidence 899999999999999999977 667778999999999988653 3467889999999999999888887
Q ss_pred EecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC-
Q 001042 918 ELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRA- 995 (1178)
Q Consensus 918 ~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~- 995 (1178)
++. ..-.++++.|. .++.+++|+-|+.|++||++.+.....+.+|.+.|+.+..+++|..+.+-+.|.++++||++-
T Consensus 170 t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~ 248 (338)
T KOG0265|consen 170 TFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPF 248 (338)
T ss_pred ccc-cceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEeccc
Confidence 775 45679999999 688999999999999999999999999999999999999999999999999999999999985
Q ss_pred ---CceEEEEecCCc----cEEEEEEcC--CEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeC
Q 001042 996 ---GRQMHKFLGHTK----WIRSIRMDR--DTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSS 1066 (1178)
Q Consensus 996 ---~~~~~~~~~~~~----~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~ 1066 (1178)
.+++..+.+|.. .....+|++ +.+.+|+.|..+++||......+..+.+|.+.|++++|+|....|.+++.
T Consensus 249 ~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~s 328 (338)
T KOG0265|consen 249 APSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSS 328 (338)
T ss_pred CCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEecc
Confidence 345777776543 334556654 58999999999999999988999999999999999999999999999999
Q ss_pred CCcEEEE
Q 001042 1067 DGLLRFW 1073 (1178)
Q Consensus 1067 Dg~I~iw 1073 (1178)
|.+|.+=
T Consensus 329 dk~i~lg 335 (338)
T KOG0265|consen 329 DKTIYLG 335 (338)
T ss_pred CceeEee
Confidence 9998763
No 36
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.7e-30 Score=262.62 Aligned_cols=293 Identities=22% Similarity=0.426 Sum_probs=242.3
Q ss_pred ceEEecccccceEEEEeeeccceeccccccCC-CCEEEEEeCCCcEEEEcCC-CCCceeeEee-cccccceEE--EecCC
Q 001042 819 NIRIIRGHAGAITALHCVTKREVWDLVGDRED-AGFFISGSTDCLVKIWDPS-LRGSELRATL-KGHTRTVRA--INSDR 893 (1178)
Q Consensus 819 ~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d-~~~Lasgs~Dg~I~iWd~~-~~~~~~~~~l-~~h~~~V~~--~s~d~ 893 (1178)
.++.++||.+.|..++|+ |- |..|||||.|+.||+|+.. .....+...+ .+|+..|.+ ++|.|
T Consensus 6 ~~~~~~gh~~r~W~~awh------------p~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g 73 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWH------------PGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHG 73 (312)
T ss_pred eEEeecCCCCcEEEEEec------------cCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCC
Confidence 578899999999999998 44 7899999999999999976 2233444333 479999985 58999
Q ss_pred CEEEEEeCCCcEEEEECCCC--cEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCC---eEEEEecCCCCCE
Q 001042 894 GKVVSGSDDQSVLVWDKQTS--QLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTD---TCVATVGRCSSAV 967 (1178)
Q Consensus 894 ~~l~sgs~dg~I~iwd~~t~--~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~---~~~~~~~~~~~~I 967 (1178)
++|++|+.|.++.||.-..+ +++..+.||...|.|++|+ +|++|++++.|..|-+|.+..+ ++...++.|...|
T Consensus 74 ~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDV 153 (312)
T KOG0645|consen 74 RYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDV 153 (312)
T ss_pred cEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccc
Confidence 99999999999999987654 6788999999999999999 8999999999999999998754 4677888899999
Q ss_pred EEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEcCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCC
Q 001042 968 LCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAG 1047 (1178)
Q Consensus 968 ~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~ 1047 (1178)
..+.|+|...+|++++.|++|++|+-..+ ..-.+.+++.+|.+
T Consensus 154 K~V~WHPt~dlL~S~SYDnTIk~~~~~~d-------------------------------------ddW~c~~tl~g~~~ 196 (312)
T KOG0645|consen 154 KHVIWHPTEDLLFSCSYDNTIKVYRDEDD-------------------------------------DDWECVQTLDGHEN 196 (312)
T ss_pred cEEEEcCCcceeEEeccCCeEEEEeecCC-------------------------------------CCeeEEEEecCccc
Confidence 99999998888999998888888873210 23457788889999
Q ss_pred cEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEEecCCCEEEEEeCCCcEEEEEcCCCccccccC
Q 001042 1048 PVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSG 1127 (1178)
Q Consensus 1048 ~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~ 1127 (1178)
.|.+++|++.|..|++++.|++++||...+. .-..|+..+..++.+...||+|+.|+.|+++....
T Consensus 197 TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~------~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~-------- 262 (312)
T KOG0645|consen 197 TVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD------LSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESD-------- 262 (312)
T ss_pred eEEEEEecCCCceEEEecCCcceEeeeeccC------cchhcccceEeeeecccceEeccCCCEEEEEEecC--------
Confidence 9999999999999999999999999986543 11246777877877778999999999999998752
Q ss_pred CCCCccceeEee-ccCCCcccEEEEEEcCC-CCEEEEEeCCCcEEEEECC
Q 001042 1128 TGSKMSGWQLYR-TPQKTVAVVRCIASDLE-RKRICSGGRNGLLRLWEAT 1175 (1178)
Q Consensus 1128 ~g~~~~~~~~~~-~~~~h~~~V~~lafspd-g~~Las~s~Dg~V~IWdv~ 1175 (1178)
+-..+.|+++. .-..|...|++++|.|. .++|++||+||.|++|.+.
T Consensus 263 -~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 263 -SPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred -CCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 11223445444 45689999999999995 7899999999999999975
No 37
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.2e-31 Score=308.95 Aligned_cols=255 Identities=24% Similarity=0.409 Sum_probs=224.3
Q ss_pred CcceEEEEecCCCCcccccccc--eeecccccccCCCC----CCCCC--------CCcCCcccccceEEecccccceEEE
Q 001042 768 GRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGT----PRKQD--------STAGGKKIQSNIRIIRGHAGAITAL 833 (1178)
Q Consensus 768 ~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~----~~~~~--------~~~~~~~~~~~~~~l~gH~~~V~~l 833 (1178)
+..+.|+.||+|++.+|.|..| |++|.++....... ..... ............+++.||+++|..+
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC 457 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence 4678999999999999999999 99999985321100 00000 0111122334567799999999999
Q ss_pred EeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEE--EecCCCEEEEEeCCCcEEEEECC
Q 001042 834 HCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQ 911 (1178)
Q Consensus 834 ~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~--~s~d~~~l~sgs~dg~I~iwd~~ 911 (1178)
.|+ |+.++|+++|.|++||+|.+. .......+.||..+|+. |+|.|-++||++.|++.++|..+
T Consensus 458 sFs------------Pd~rfLlScSED~svRLWsl~--t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d 523 (707)
T KOG0263|consen 458 SFS------------PDRRFLLSCSEDSSVRLWSLD--TWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTD 523 (707)
T ss_pred eec------------ccccceeeccCCcceeeeecc--cceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecc
Confidence 998 899999999999999999976 56667788899999995 58999999999999999999999
Q ss_pred CCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 001042 912 TSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANI 990 (1178)
Q Consensus 912 t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~l 990 (1178)
..++.+.+.+|-+.|.|+.|+ +.+++++||.|.+|++||+.+|..++.+.+|.++|.+++|+|+|++|++|+.||.|.+
T Consensus 524 ~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~i 603 (707)
T KOG0263|consen 524 HNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKI 603 (707)
T ss_pred cCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEE
Confidence 999999999999999999999 7889999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCceEEEEecCCccEEEEEE--cCCEEEEEeCCCcEEEEEcCCC
Q 001042 991 WDIRAGRQMHKFLGHTKWIRSIRM--DRDTVITGSDDWTARMWSISRG 1036 (1178)
Q Consensus 991 wD~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~ 1036 (1178)
||+.+++.+..+.+|.+.|.++.| +++.|++|+.|.+|++||+..-
T Consensus 604 WDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 604 WDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred EEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 999999999999999999999999 6779999999999999998653
No 38
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.3e-32 Score=293.25 Aligned_cols=275 Identities=21% Similarity=0.433 Sum_probs=245.8
Q ss_pred CcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceeccc
Q 001042 768 GRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLV 845 (1178)
Q Consensus 768 ~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~ 845 (1178)
.-.|..+.|+|+|+.|++|++. ..+|+..+-. --.++..|..+|.++.|+
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fn-------------------FEtilQaHDs~Vr~m~ws--------- 147 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFN-------------------FETILQAHDSPVRTMKWS--------- 147 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceee-------------------HHHHhhhhcccceeEEEc---------
Confidence 3457778999999999999888 9999976433 234678999999999998
Q ss_pred cccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccc-cceEE--EecCCCEEEEEeCCCcEEEEECCCCcEEEEecCC
Q 001042 846 GDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHT-RTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGH 922 (1178)
Q Consensus 846 ~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~-~~V~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h 922 (1178)
++|.+++||+.+|.|++|+.+ ...++...+|. ..|++ ++|+...+++++.||+|+|||....+....+.+|
T Consensus 148 ---~~g~wmiSgD~gG~iKyWqpn---mnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GH 221 (464)
T KOG0284|consen 148 ---HNGTWMISGDKGGMIKYWQPN---MNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGH 221 (464)
T ss_pred ---cCCCEEEEcCCCceEEecccc---hhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccC
Confidence 899999999999999999966 33344455554 77774 6899999999999999999999998888899999
Q ss_pred CCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEE
Q 001042 923 DAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHK 1001 (1178)
Q Consensus 923 ~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~ 1001 (1178)
.-.|.+++|+ ....+++|+.|..|++||.++|.|+.++..|+..|..+.|++++++|++++.|..++++|+++.+.+..
T Consensus 222 gwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~ 301 (464)
T KOG0284|consen 222 GWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFT 301 (464)
T ss_pred CCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHH
Confidence 9999999999 577899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCccEEEEEEc---CCEEEEEeCCCcEEEEEcCCCeeeeEec-cCCCcEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 001042 1002 FLGHTKWIRSIRMD---RDTVITGSDDWTARMWSISRGTCDAVLA-CHAGPVQCVEYSSSDRGIITGSSDGLLRFWEND 1076 (1178)
Q Consensus 1002 ~~~~~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~-~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~ 1076 (1178)
+++|...++++.|+ ++.+.+|+.||.|..|.+...+++..+. +|...|++++|+|-|..|++|+.|.++++|.-.
T Consensus 302 ~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 302 YRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred hhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 99999999999995 5699999999999999998666655544 799999999999999999999999999999754
No 39
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2e-31 Score=279.16 Aligned_cols=286 Identities=19% Similarity=0.352 Sum_probs=255.9
Q ss_pred CCCCccc-ccCCcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEE
Q 001042 758 DQQPAEA-SGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALH 834 (1178)
Q Consensus 758 ~~~~~~~-~gh~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~ 834 (1178)
.++..+. .||-+-|.|+++.|-.+++++|+.| |+|||+.+++ ...++.||-..|..++
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~-------------------LkltltGhi~~vr~va 200 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQ-------------------LKLTLTGHIETVRGVA 200 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCe-------------------EEEeecchhheeeeee
Confidence 3444444 4555555566999999999999999 9999999999 7788999999999999
Q ss_pred eeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEE--ecCCCEEEEEeCCCcEEEEECCC
Q 001042 835 CVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQT 912 (1178)
Q Consensus 835 fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~--s~d~~~l~sgs~dg~I~iwd~~t 912 (1178)
+| +...|+.+++.|+.|+.||++ ..+.++.+.||-..|.|+ +|.-+.|++|+.|.+++|||+++
T Consensus 201 vS------------~rHpYlFs~gedk~VKCwDLe--~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRt 266 (460)
T KOG0285|consen 201 VS------------KRHPYLFSAGEDKQVKCWDLE--YNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRT 266 (460)
T ss_pred ec------------ccCceEEEecCCCeeEEEech--hhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecc
Confidence 98 778899999999999999987 677889999999999987 68899999999999999999999
Q ss_pred CcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 001042 913 SQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIW 991 (1178)
Q Consensus 913 ~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lw 991 (1178)
...+..+.||..+|..+.+. -+..+++|+.|++|++||++.|+...++..|...+.+++.+|....+|+++.| .|+-|
T Consensus 267 r~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w 345 (460)
T KOG0285|consen 267 RASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQW 345 (460)
T ss_pred cceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceec
Confidence 99999999999999999998 56789999999999999999999999999999999999999999999999887 58999
Q ss_pred ECCCCceEEEEecCCccEEEEEEc-CCEEEEEeCCCcEEEEEcCCCeeeeEecc--------CCCcEEEEEEecCCCEEE
Q 001042 992 DIRAGRQMHKFLGHTKWIRSIRMD-RDTVITGSDDWTARMWSISRGTCDAVLAC--------HAGPVQCVEYSSSDRGII 1062 (1178)
Q Consensus 992 D~~~~~~~~~~~~~~~~v~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--------h~~~I~~l~~spdg~~L~ 1062 (1178)
++..|..+..+.+|...|++++.+ .+.+++|+++|.+.+||.++|...+.... ....|.+.+|+..|..|+
T Consensus 346 ~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rli 425 (460)
T KOG0285|consen 346 KLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLI 425 (460)
T ss_pred cCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEE
Confidence 999999999999999999999995 45999999999999999999866554421 245689999999999999
Q ss_pred EEeCCCcEEEEECCC
Q 001042 1063 TGSSDGLLRFWENDD 1077 (1178)
Q Consensus 1063 sgs~Dg~I~iwd~~~ 1077 (1178)
+|..|.+|++|.-+.
T Consensus 426 t~eadKtIk~~keDe 440 (460)
T KOG0285|consen 426 TGEADKTIKMYKEDE 440 (460)
T ss_pred eccCCcceEEEeccc
Confidence 999999999997654
No 40
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=6.1e-31 Score=270.90 Aligned_cols=284 Identities=23% Similarity=0.434 Sum_probs=253.3
Q ss_pred ccceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEE--ecCCC
Q 001042 817 QSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDRG 894 (1178)
Q Consensus 817 ~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~--s~d~~ 894 (1178)
..++..+.||.+.|+.+.|+ |+|.++||||.|..|.+|++. +..+-...+++|+++|..+ ..|++
T Consensus 37 ~ap~m~l~gh~geI~~~~F~------------P~gs~~aSgG~Dr~I~LWnv~-gdceN~~~lkgHsgAVM~l~~~~d~s 103 (338)
T KOG0265|consen 37 QAPIMLLPGHKGEIYTIKFH------------PDGSCFASGGSDRAIVLWNVY-GDCENFWVLKGHSGAVMELHGMRDGS 103 (338)
T ss_pred cchhhhcCCCcceEEEEEEC------------CCCCeEeecCCcceEEEEecc-ccccceeeeccccceeEeeeeccCCC
Confidence 33677789999999999998 899999999999999999976 4556667889999999965 79999
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe--CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEE
Q 001042 895 KVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEY 972 (1178)
Q Consensus 895 ~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~--~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~ 972 (1178)
.+++++.|.+++.||+++|+.++.+++|...|+.+.-. ...++.+|+.||++++||+++..+++++ ....+++++.|
T Consensus 104 ~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~-~~kyqltAv~f 182 (338)
T KOG0265|consen 104 HILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF-ENKYQLTAVGF 182 (338)
T ss_pred EEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcc-ccceeEEEEEe
Confidence 99999999999999999999999999999999999866 4556779999999999999999988877 34678999999
Q ss_pred eCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEE--cCCEEEEEeCCCcEEEEEcCC----CeeeeEeccCC
Q 001042 973 DDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM--DRDTVITGSDDWTARMWSISR----GTCDAVLACHA 1046 (1178)
Q Consensus 973 sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~----~~~~~~~~~h~ 1046 (1178)
..++..+.+|+-|+.|++||++.+.....+.+|.+.|+.++. ++.++.+-+.|.++++||++. ..++..+.+|.
T Consensus 183 ~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~ 262 (338)
T KOG0265|consen 183 KDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHI 262 (338)
T ss_pred cccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecch
Confidence 999999999999999999999999999999999999999988 566999999999999999975 35577777654
Q ss_pred C----cEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE--ecCCCEEEEEeCCCcEEEEE
Q 001042 1047 G----PVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFH 1116 (1178)
Q Consensus 1047 ~----~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~dg~~Lasgs~Dg~I~iwd 1116 (1178)
. ....++|+|+++.+.+|+.|..+++||..+. ..+..++||.+.|.++ +|...++.+++.|.+|.+=.
T Consensus 263 hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r--~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 263 HNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR--RILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred hhhhhhcceeeccCCCCccccccccceEEEeecccc--cEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 3 3567899999999999999999999998876 7888999999999776 79999999999999998743
No 41
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.98 E-value=3.4e-31 Score=305.19 Aligned_cols=321 Identities=22% Similarity=0.351 Sum_probs=261.3
Q ss_pred eEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEEeCCCcEEEEE
Q 001042 830 ITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWD 909 (1178)
Q Consensus 830 V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sgs~dg~I~iwd 909 (1178)
|....|++..+...|+.|++|+.+||.|..|..|++|.+. ..++ +.+++-. +...+=+.+.|-.+.+-|
T Consensus 369 ic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~--p~kl-~~lk~~~--------~l~~~d~~sad~~~~~~D 437 (707)
T KOG0263|consen 369 ICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLT--PKKL-KKLKDAS--------DLSNIDTESADVDVDMLD 437 (707)
T ss_pred EEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecc--hhhh-ccccchh--------hhccccccccchhhhhcc
Confidence 4444455555555666666999999999999999999976 2222 2222111 112222344555577777
Q ss_pred CCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeE
Q 001042 910 KQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVA 988 (1178)
Q Consensus 910 ~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I 988 (1178)
-.++....++.+|.++|....|+ +.+.|++++.|+++++|.+.+..++..+++|..+|+.+.|+|.|-++|+++.|++.
T Consensus 438 ~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tA 517 (707)
T KOG0263|consen 438 DDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTA 517 (707)
T ss_pred ccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCcee
Confidence 77777778899999999999999 67789999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCceEEEEecCCccEEEEEEcCC--EEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeC
Q 001042 989 NIWDIRAGRQMHKFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSS 1066 (1178)
Q Consensus 989 ~lwD~~~~~~~~~~~~~~~~v~~l~~~~~--~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~ 1066 (1178)
++|.....++.+.+.+|.+.|.|++|+|+ ++++||.|.+||+||+.+|..++.+.||.++|++++|||+|++|++|+.
T Consensus 518 rLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~e 597 (707)
T KOG0263|consen 518 RLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDE 597 (707)
T ss_pred eeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeeccc
Confidence 99999999999999999999999999776 9999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEECCCCceEEEEEecccCCcEEEE--ecCCCEEEEEeCCCcEEEEEcCCCcccccc----CC-----CCCccce
Q 001042 1067 DGLLRFWENDDGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFS----GT-----GSKMSGW 1135 (1178)
Q Consensus 1067 Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~----~~-----g~~~~~~ 1135 (1178)
||.|.+||+.++ ..+..+.+|++.|.++ +.+|..||+|+.|++|++||+......... .. ...-..-
T Consensus 598 d~~I~iWDl~~~--~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (707)
T KOG0263|consen 598 DGLIKIWDLANG--SLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASS 675 (707)
T ss_pred CCcEEEEEcCCC--cchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCc
Confidence 999999999999 7888899999999777 789999999999999999998753222000 00 0000111
Q ss_pred eEeeccCCCcccEEEEEEcCCCCEEEEE
Q 001042 1136 QLYRTPQKTVAVVRCIASDLERKRICSG 1163 (1178)
Q Consensus 1136 ~~~~~~~~h~~~V~~lafspdg~~Las~ 1163 (1178)
.++..+..-..+|.++.|....-.|+.|
T Consensus 676 ~llgs~~tK~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 676 LLLGSFYTKNTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred ceeeeeeecCceEEEEEEeccceeEEec
Confidence 3445555566689999998877656655
No 42
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.98 E-value=3.9e-30 Score=288.79 Aligned_cols=395 Identities=15% Similarity=0.200 Sum_probs=286.4
Q ss_pred ccccCcccc-cCCCCCCCCCCCCCCcccccCCcceEEEEecCCCCcccccccc----eeecccccccCCCCCCCCCCCcC
Q 001042 738 GQSSLSNGM-PSPLSKDATNDDQQPAEASGIGRSWVQSMFSREASSRSHSFSR----VRKWTSDAANENGTPRKQDSTAG 812 (1178)
Q Consensus 738 ~~~~~~~~~-fSP~g~~~~~~~~~~~~~~gh~~~i~~~aFSpdg~~las~~~d----I~vWd~~~~~~~~~~~~~~~~~~ 812 (1178)
..+.|-+.| |.|+. ..|....-.|..++.++|||++|+++|+|-.. ++||++....
T Consensus 53 aYpAGCvVVlfn~~~------~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~------------- 113 (1080)
T KOG1408|consen 53 AYPAGCVVVLFNVDS------CTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHG------------- 113 (1080)
T ss_pred eeccCcEEEEEcccc------cchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeecccc-------------
Confidence 444555533 66663 33445556677899999999999999998633 9999999765
Q ss_pred CcccccceEEecccccceEEEEeeeccc-------------------------------eeccccccCCCCEEEEEeCCC
Q 001042 813 GKKIQSNIRIIRGHAGAITALHCVTKRE-------------------------------VWDLVGDREDAGFFISGSTDC 861 (1178)
Q Consensus 813 ~~~~~~~~~~l~gH~~~V~~l~fs~~~~-------------------------------~~~~~~~s~d~~~Lasgs~Dg 861 (1178)
.+..+..|.-.|+|++|+|..+ ....++|+.||.|++|++ ..
T Consensus 114 ------vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~asnkiss~Vsav~fsEdgSYfvT~g-nr 186 (1080)
T KOG1408|consen 114 ------VVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGASNKISSVVSAVAFSEDGSYFVTSG-NR 186 (1080)
T ss_pred ------chhhhhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhcccccccccceeEEEEEEccCCceeeeee-ee
Confidence 5667888999999999998742 234488899999999988 46
Q ss_pred cEEEEcCCCCCce-----------------------------------eeEeecccc-----------------cceEEE
Q 001042 862 LVKIWDPSLRGSE-----------------------------------LRATLKGHT-----------------RTVRAI 889 (1178)
Q Consensus 862 ~I~iWd~~~~~~~-----------------------------------~~~~l~~h~-----------------~~V~~~ 889 (1178)
.|++|.++..... ...+-.||- ....|+
T Consensus 187 Hvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCI 266 (1080)
T KOG1408|consen 187 HVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCI 266 (1080)
T ss_pred eEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhcccccee
Confidence 7999987522100 000011110 011133
Q ss_pred ecCCCEEEEEeCCCcEEEEECC----------------------------------------------------------
Q 001042 890 NSDRGKVVSGSDDQSVLVWDKQ---------------------------------------------------------- 911 (1178)
Q Consensus 890 s~d~~~l~sgs~dg~I~iwd~~---------------------------------------------------------- 911 (1178)
+-..+++++|+.+|.|++++..
T Consensus 267 cVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndh 346 (1080)
T KOG1408|consen 267 CVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDH 346 (1080)
T ss_pred eeecceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCc
Confidence 4455666666666666666432
Q ss_pred --------CCcEE---EEecCCCCceEEEEEe------------CCCeEEEEeCCCeEEEEeCCCCeEEEEe--------
Q 001042 912 --------TSQLL---EELKGHDAQVSCVRML------------SGERVLTASHDGTVKMWDVRTDTCVATV-------- 960 (1178)
Q Consensus 912 --------t~~~~---~~l~~h~~~V~~l~~~------------~~~~l~sgs~dg~V~iwd~~~~~~~~~~-------- 960 (1178)
+-+.+ ..+--|...|+++.-. +...+++++.||+|++||+..+..-..+
T Consensus 347 SlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~ 426 (1080)
T KOG1408|consen 347 SLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSAN 426 (1080)
T ss_pred eEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhh
Confidence 21111 1111244555554321 2345899999999999998752110000
Q ss_pred -----------------------------cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEE
Q 001042 961 -----------------------------GRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRS 1011 (1178)
Q Consensus 961 -----------------------------~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~ 1011 (1178)
-.....+++++.+|+|++||+|...|.+++||+.+.+.+..+..|...|.|
T Consensus 427 l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilc 506 (1080)
T KOG1408|consen 427 LSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILC 506 (1080)
T ss_pred hhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEE
Confidence 012346899999999999999999999999999999999999999999999
Q ss_pred EEEcC-----CEEEEEeCCCcEEEEEcCCC-eeeeEeccCCCc-------------------------------------
Q 001042 1012 IRMDR-----DTVITGSDDWTARMWSISRG-TCDAVLACHAGP------------------------------------- 1048 (1178)
Q Consensus 1012 l~~~~-----~~l~sgs~dg~I~iwd~~~~-~~~~~~~~h~~~------------------------------------- 1048 (1178)
+.++. ..|++++.|.-|.+||+... ..+.++.+|...
T Consensus 507 LeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~ 586 (1080)
T KOG1408|consen 507 LEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRL 586 (1080)
T ss_pred EeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCcee
Confidence 99943 38999999999999998643 223333344333
Q ss_pred ------------EEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEec---ccCCcEEEE--ecCCCEEEEEeCCCc
Q 001042 1049 ------------VQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVT---IHSSAILSI--NAGDHWLGIGAADNS 1111 (1178)
Q Consensus 1049 ------------I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~---~h~~~i~~i--s~dg~~Lasgs~Dg~ 1111 (1178)
+..++..|..+++++++.|..|+|||+.+| +..+.++ +|.+....+ .|.|.|+|+.+.|.+
T Consensus 587 f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sg--Kq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdkt 664 (1080)
T KOG1408|consen 587 FPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESG--KQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKT 664 (1080)
T ss_pred ccccccccccceEEEeeeCCCcceEEEEecccceEEEecccc--ceeeeecccccCCCceEEEEECCCccEEEEeecCCc
Confidence 455666677788899999999999999999 5555554 455555554 799999999999999
Q ss_pred EEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001042 1112 MSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEAT 1175 (1178)
Q Consensus 1112 I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~ 1175 (1178)
+.++|..++ +++.+..||...|+.+.|++|.+.|++++.||+|.||.+.
T Consensus 665 l~~~Df~sg---------------EcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 665 LCFVDFVSG---------------ECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred eEEEEeccc---------------hhhhhhcCcchheeeeeecccchhheeecCCceEEEEECc
Confidence 999999844 7888899999999999999999999999999999999985
No 43
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.98 E-value=4.6e-32 Score=288.99 Aligned_cols=275 Identities=18% Similarity=0.346 Sum_probs=243.7
Q ss_pred cceEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecC
Q 001042 884 RTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGR 962 (1178)
Q Consensus 884 ~~V~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~ 962 (1178)
..+..+.|+|+.|++|+..|...+|+..+......++.|..+|.++.|+ ++..+++|+.+|.|++|+...... +.+..
T Consensus 99 V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV-k~~~a 177 (464)
T KOG0284|consen 99 VNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV-KIIQA 177 (464)
T ss_pred eeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh-HHhhH
Confidence 3445679999999999999999999986555445567899999999999 899999999999999999865443 44444
Q ss_pred -CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEcCC--EEEEEeCCCcEEEEEcCCCeee
Q 001042 963 -CSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRGTCD 1039 (1178)
Q Consensus 963 -~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~--~l~sgs~dg~I~iwd~~~~~~~ 1039 (1178)
|...|++++|+|+...+++++.||+|+|||....+....+.+|.-.|.++.|++. .+++|+.|..|++||.++|.|+
T Consensus 178 hh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl 257 (464)
T KOG0284|consen 178 HHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCL 257 (464)
T ss_pred hhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchh
Confidence 4589999999999999999999999999999999998999999999999999775 8999999999999999999999
Q ss_pred eEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE--ec-CCCEEEEEeCCCcEEEEE
Q 001042 1040 AVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI--NA-GDHWLGIGAADNSMSLFH 1116 (1178)
Q Consensus 1040 ~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~-dg~~Lasgs~Dg~I~iwd 1116 (1178)
.++.+|+..|..+.|++++++|+++|.|..++++|+++- +.+..+++|...++++ +| ...++.+|+.||.|..|.
T Consensus 258 ~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m--kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~ 335 (464)
T KOG0284|consen 258 ATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM--KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWV 335 (464)
T ss_pred hhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh--HHHHHhhcchhhheeeccccccccceeeccCCCceEEEe
Confidence 999999999999999999999999999999999999955 6778889999999988 55 678899999999999999
Q ss_pred cCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001042 1117 RPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEAT 1175 (1178)
Q Consensus 1117 ~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~ 1175 (1178)
+.... .+.....+|...|++++|+|=|.+||+|+.|.++++|.-.
T Consensus 336 v~~~~--------------p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 336 VGLEE--------------PLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred ccccc--------------cccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 87221 2333456899999999999999999999999999999643
No 44
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.8e-29 Score=256.55 Aligned_cols=282 Identities=20% Similarity=0.349 Sum_probs=241.2
Q ss_pred ccccCCcceEEEEecCC-CCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEe-cccccceEEEEeeec
Q 001042 763 EASGIGRSWVQSMFSRE-ASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRII-RGHAGAITALHCVTK 838 (1178)
Q Consensus 763 ~~~gh~~~i~~~aFSpd-g~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~gH~~~V~~l~fs~~ 838 (1178)
.+.||...+-.+||+|- |..||+|+.| ||+|+...+. ...+..++ .+|+..|.+++|+
T Consensus 9 ~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~----------------s~~ck~vld~~hkrsVRsvAws-- 70 (312)
T KOG0645|consen 9 KLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD----------------SWTCKTVLDDGHKRSVRSVAWS-- 70 (312)
T ss_pred eecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC----------------cEEEEEeccccchheeeeeeec--
Confidence 45788888999999999 9999999999 9999988532 12255555 4799999999998
Q ss_pred cceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEE--EecCCCEEEEEeCCCcEEEEECCCC---
Q 001042 839 REVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTS--- 913 (1178)
Q Consensus 839 ~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~--~s~d~~~l~sgs~dg~I~iwd~~t~--- 913 (1178)
|.|++||+||-|.++.||.-.....+...+++||...|-+ ++.+|++||+++.|+.|.||.+..+
T Consensus 71 ----------p~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEf 140 (312)
T KOG0645|consen 71 ----------PHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEF 140 (312)
T ss_pred ----------CCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcE
Confidence 8999999999999999999776677889999999999986 5899999999999999999998754
Q ss_pred cEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCC-C--CeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEE
Q 001042 914 QLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVR-T--DTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVAN 989 (1178)
Q Consensus 914 ~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~-~--~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~ 989 (1178)
++...++.|...|..+.|+ ..+.|++++.|++|++|+-. . -.+++++.+|...|.+++|++.|..+++++.|++++
T Consensus 141 ec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~ 220 (312)
T KOG0645|consen 141 ECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVS 220 (312)
T ss_pred EEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceE
Confidence 5677899999999999999 57889999999999999876 2 368999999999999999999999999999999999
Q ss_pred EEECCCCceEEEEecCCccEEEEEEcCCEEEEEeCCCcEEEEEcCCCe--e-----eeEeccCCCcEEEEEEecC-CCEE
Q 001042 990 IWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGT--C-----DAVLACHAGPVQCVEYSSS-DRGI 1061 (1178)
Q Consensus 990 lwD~~~~~~~~~~~~~~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~--~-----~~~~~~h~~~I~~l~~spd-g~~L 1061 (1178)
+|-..+.- -..|...+..++|....|++++.|+.|+++.-..+- + ...-..|...|++++|.|. .+.|
T Consensus 221 Iw~~~~~~----~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L 296 (312)
T KOG0645|consen 221 IWRLYTDL----SGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRL 296 (312)
T ss_pred eeeeccCc----chhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCce
Confidence 99865221 124678899999997799999999999999865431 1 1123468889999999995 7789
Q ss_pred EEEeCCCcEEEEECC
Q 001042 1062 ITGSSDGLLRFWEND 1076 (1178)
Q Consensus 1062 ~sgs~Dg~I~iwd~~ 1076 (1178)
++|+.||.|++|.+.
T Consensus 297 ~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 297 ASGGDDGIVNFWELE 311 (312)
T ss_pred eecCCCceEEEEEec
Confidence 999999999999864
No 45
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=6.8e-29 Score=277.06 Aligned_cols=281 Identities=31% Similarity=0.608 Sum_probs=249.8
Q ss_pred eEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceE--EEecCCCEEE
Q 001042 820 IRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKVV 897 (1178)
Q Consensus 820 ~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~--~~s~d~~~l~ 897 (1178)
++++++|.++|++++|+ ++++++++|+.||.|++|++. .......+.+|...+. .++++++.++
T Consensus 2 ~~~~~~h~~~i~~~~~~------------~~~~~l~~~~~~g~i~i~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 67 (289)
T cd00200 2 RRTLKGHTGGVTCVAFS------------PDGKLLATGSGDGTIKVWDLE--TGELLRTLKGHTGPVRDVAASADGTYLA 67 (289)
T ss_pred chHhcccCCCEEEEEEc------------CCCCEEEEeecCcEEEEEEee--CCCcEEEEecCCcceeEEEECCCCCEEE
Confidence 34678999999999998 889999999999999999976 3445667778888875 4578889999
Q ss_pred EEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEeC-CCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCC
Q 001042 898 SGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLS-GERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDST 976 (1178)
Q Consensus 898 sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~~-~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~ 976 (1178)
+++.||.|++||+.+++....+..|...+.++.|++ +..+++++.||.+.+||+.+++....+..|...+.+++|+|++
T Consensus 68 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 147 (289)
T cd00200 68 SGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDG 147 (289)
T ss_pred EEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcC
Confidence 999999999999999888889999999999999994 4666666679999999999999888888888999999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEcCC--EEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEE
Q 001042 977 GILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEY 1054 (1178)
Q Consensus 977 ~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~--~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~ 1054 (1178)
.++++++.+|.+++||+++++.+..+..|...+.++.++++ .+++++.||.+++||+++++....+..|...+.+++|
T Consensus 148 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~ 227 (289)
T cd00200 148 TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAF 227 (289)
T ss_pred CEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEE
Confidence 98888888999999999999999999899999999999665 8999999999999999999998888889999999999
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE--ecCCCEEEEEeCCCcEEEEE
Q 001042 1055 SSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFH 1116 (1178)
Q Consensus 1055 spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~dg~~Lasgs~Dg~I~iwd 1116 (1178)
++++.++++++.||.|++||+.++ .....+..|...+.++ ++++.++++++.||.+++|+
T Consensus 228 ~~~~~~~~~~~~~~~i~i~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 228 SPDGYLLASGSEDGTIRVWDLRTG--ECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cCCCcEEEEEcCCCcEEEEEcCCc--eeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 999888888888999999999987 5666677888888666 68889999999999999996
No 46
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.1e-29 Score=280.37 Aligned_cols=278 Identities=21% Similarity=0.403 Sum_probs=249.5
Q ss_pred EEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEE--EecCCCEEEE
Q 001042 821 RIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVS 898 (1178)
Q Consensus 821 ~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~--~s~d~~~l~s 898 (1178)
+.+..|+..|.++.++ |...+++++-.+|.|.|||.+ ++.+++.+.-...+|.+ |-...+++++
T Consensus 7 rk~~~rSdRVKsVd~H------------PtePw~la~LynG~V~IWnye--tqtmVksfeV~~~PvRa~kfiaRknWiv~ 72 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFH------------PTEPWILAALYNGDVQIWNYE--TQTMVKSFEVSEVPVRAAKFIARKNWIVT 72 (794)
T ss_pred hHhhccCCceeeeecC------------CCCceEEEeeecCeeEEEecc--cceeeeeeeecccchhhheeeeccceEEE
Confidence 3456699999999999 788899999999999999965 67778888888888874 5677889999
Q ss_pred EeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCC-eEEEEecCCCCCEEEEEEeC-C
Q 001042 899 GSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTD-TCVATVGRCSSAVLCMEYDD-S 975 (1178)
Q Consensus 899 gs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~-~~~~~~~~~~~~I~~l~~sp-~ 975 (1178)
|+.|..|+||+..+++.+..+..|.+.|.+++.+ ...++++++.|-+|++||.+.+ .+.+++.+|...|.+++|+| |
T Consensus 73 GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD 152 (794)
T KOG0276|consen 73 GSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKD 152 (794)
T ss_pred ecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCC
Confidence 9999999999999999999999999999999999 5678999999999999999865 67889999999999999999 7
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEE-cC---CEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEE
Q 001042 976 TGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM-DR---DTVITGSDDWTARMWSISRGTCDAVLACHAGPVQC 1051 (1178)
Q Consensus 976 ~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~-~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~ 1051 (1178)
.+.+++++-|++|++|.+.+..+..++.+|...|+|+.+ .+ -++++|++|.+++|||..+.+|++++.+|...|..
T Consensus 153 ~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~ 232 (794)
T KOG0276|consen 153 PNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSF 232 (794)
T ss_pred ccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceE
Confidence 789999999999999999999999999999999999999 22 39999999999999999999999999999999999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEEe--cCCCEEEEEeCCCcEEE
Q 001042 1052 VEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSIN--AGDHWLGIGAADNSMSL 1114 (1178)
Q Consensus 1052 l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is--~dg~~Lasgs~Dg~I~i 1114 (1178)
+.|+|.-..+++||.||+++||+..+- +....+...-.+++++. +++..+++|.+.|.|.+
T Consensus 233 v~fhp~lpiiisgsEDGTvriWhs~Ty--~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 233 VFFHPELPIIISGSEDGTVRIWNSKTY--KLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred EEecCCCcEEEEecCCccEEEecCcce--ehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 999999999999999999999998876 45555666677788884 77778888888777644
No 47
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1e-29 Score=303.30 Aligned_cols=280 Identities=28% Similarity=0.531 Sum_probs=251.2
Q ss_pred CCcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceecc
Q 001042 767 IGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDL 844 (1178)
Q Consensus 767 h~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~ 844 (1178)
|..++.++.||+||+.+++++.+ +++|+..+... ...+.+.+|...|++++|+
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-----------------~~~~~l~~h~~~v~~~~fs-------- 212 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-----------------NLLRELSGHTRGVSDVAFS-------- 212 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-----------------hhhccccccccceeeeEEC--------
Confidence 36789999999999999999888 99999965441 1456679999999999998
Q ss_pred ccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEE--EecCCCEEEEEeCCCcEEEEECCCCcEEEEecCC
Q 001042 845 VGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGH 922 (1178)
Q Consensus 845 ~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h 922 (1178)
+|++++++|+.|++|+|||+. ......+++.+|...|++ |+++++.+++|+.|++|+|||+++++++..+.+|
T Consensus 213 ----~d~~~l~s~s~D~tiriwd~~-~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~h 287 (456)
T KOG0266|consen 213 ----PDGSYLLSGSDDKTLRIWDLK-DDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGH 287 (456)
T ss_pred ----CCCcEEEEecCCceEEEeecc-CCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeecc
Confidence 899999999999999999984 456777999999999995 5899999999999999999999999999999999
Q ss_pred CCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCe--EEEEecCCCCC--EEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Q 001042 923 DAQVSCVRML-SGERVLTASHDGTVKMWDVRTDT--CVATVGRCSSA--VLCMEYDDSTGILAAGGRDAVANIWDIRAGR 997 (1178)
Q Consensus 923 ~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~--~~~~~~~~~~~--I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~ 997 (1178)
.+.|++++|+ +++.+++++.||.|++||+.++. +...+..+... +++++|+|++.++++++.|+.+++||++.+.
T Consensus 288 s~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~ 367 (456)
T KOG0266|consen 288 SDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGK 367 (456)
T ss_pred CCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCc
Confidence 9999999999 89999999999999999999999 56777666554 9999999999999999999999999999999
Q ss_pred eEEEEecCCccEEEEE---E--cCCEEEEEeCCCcEEEEEcCCCeeeeEeccC-CCcEEEEEEecCCCEEEEEe--CCCc
Q 001042 998 QMHKFLGHTKWIRSIR---M--DRDTVITGSDDWTARMWSISRGTCDAVLACH-AGPVQCVEYSSSDRGIITGS--SDGL 1069 (1178)
Q Consensus 998 ~~~~~~~~~~~v~~l~---~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h-~~~I~~l~~spdg~~L~sgs--~Dg~ 1069 (1178)
....+.+|...+.++. . .+..+++|+.|+.|++||..++..+..+.+| ...+..+.+++..+++++++ .|+.
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~ 447 (456)
T KOG0266|consen 368 SVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGL 447 (456)
T ss_pred ceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCce
Confidence 9999999888654442 1 4669999999999999999999999999999 89999999999999999998 7899
Q ss_pred EEEEECC
Q 001042 1070 LRFWEND 1076 (1178)
Q Consensus 1070 I~iwd~~ 1076 (1178)
+++|..+
T Consensus 448 ~~~w~~~ 454 (456)
T KOG0266|consen 448 IRLWKYD 454 (456)
T ss_pred EEEecCC
Confidence 9999754
No 48
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=9.2e-30 Score=253.14 Aligned_cols=278 Identities=20% Similarity=0.326 Sum_probs=247.5
Q ss_pred eEeecccccceEEE--ecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCC
Q 001042 876 RATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVR 952 (1178)
Q Consensus 876 ~~~l~~h~~~V~~~--s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~ 952 (1178)
...+.+|.++|.++ +-||++.++++.|.+|++|+...|.+++++.+|...|..++.+ ++..+++|+.|..+.+||+.
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~ 89 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN 89 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcc
Confidence 46778899999975 8899999999999999999999999999999999999999988 88899999999999999999
Q ss_pred CCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC--ceEEEEecCCccEEEEEEcCCEEEEEeCCCcEEE
Q 001042 953 TDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAG--RQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARM 1030 (1178)
Q Consensus 953 ~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~--~~~~~~~~~~~~v~~l~~~~~~l~sgs~dg~I~i 1030 (1178)
+|+..+.+.+|...|+.+.|+.+...+++|+-|..+++||.++. ++++.+....+.|.++...+..+++|+.||+++.
T Consensus 90 TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRt 169 (307)
T KOG0316|consen 90 TGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRT 169 (307)
T ss_pred cCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEE
Confidence 99999999999999999999999999999999999999999864 6788888889999999999999999999999999
Q ss_pred EEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE----ecCCCEEEEE
Q 001042 1031 WSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI----NAGDHWLGIG 1106 (1178)
Q Consensus 1031 wd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i----s~dg~~Lasg 1106 (1178)
||++.|+.....-+ .+|+++.|+++++..++++.|+++++.|-.+| +.++.+.+|.+.-..+ +.....+++|
T Consensus 170 ydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tG--klL~sYkGhkn~eykldc~l~qsdthV~sg 245 (307)
T KOG0316|consen 170 YDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETG--KLLKSYKGHKNMEYKLDCCLNQSDTHVFSG 245 (307)
T ss_pred EEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccchh--HHHHHhcccccceeeeeeeecccceeEEec
Confidence 99999988766654 58999999999999999999999999999999 7778888998776444 5677899999
Q ss_pred eCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCccc-EEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001042 1107 AADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAV-VRCIASDLERKRICSGGRNGLLRLWE 1173 (1178)
Q Consensus 1107 s~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~-V~~lafspdg~~Las~s~Dg~V~IWd 1173 (1178)
++||.|.+||+... ..+..+..|... |++++++|.-..+.++. ++.+..|.
T Consensus 246 SEDG~Vy~wdLvd~---------------~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~ 297 (307)
T KOG0316|consen 246 SEDGKVYFWDLVDE---------------TQISKLSVVSTVIVTDLSCHPTMDDFITAT-GHGDLFWY 297 (307)
T ss_pred cCCceEEEEEeccc---------------eeeeeeccCCceeEEeeecccCccceeEec-CCceecee
Confidence 99999999999744 444455556665 89999999888888775 55566664
No 49
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=9.2e-29 Score=276.03 Aligned_cols=280 Identities=30% Similarity=0.599 Sum_probs=249.0
Q ss_pred EeecccccceEEE--ecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCC
Q 001042 877 ATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRT 953 (1178)
Q Consensus 877 ~~l~~h~~~V~~~--s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~ 953 (1178)
..+.+|...|.++ +++++.+++++.||.+++|++.+++....+..|...+..+.|. +++.+++++.||.|++||+.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 4567899999865 7889999999999999999999998888899999999999998 566899999999999999999
Q ss_pred CeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEcC--CEEEEEeCCCcEEEE
Q 001042 954 DTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR--DTVITGSDDWTARMW 1031 (1178)
Q Consensus 954 ~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~--~~l~sgs~dg~I~iw 1031 (1178)
++....+..+...+.++.|+++++++++++.+|.+.+||+++++....+..|...+.++++++ .++++++.||.|++|
T Consensus 83 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~ 162 (289)
T cd00200 83 GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW 162 (289)
T ss_pred ccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEE
Confidence 888888888888999999999988888888899999999999999999988999999999976 477777779999999
Q ss_pred EcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE--ecCCCEEEEEeCC
Q 001042 1032 SISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAAD 1109 (1178)
Q Consensus 1032 d~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~dg~~Lasgs~D 1109 (1178)
|+++++....+..|...+.++.|+|+++.+++++.||.|++||+.++ .....+..|...+.++ ++++.++++++.|
T Consensus 163 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 240 (289)
T cd00200 163 DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG--KCLGTLRGHENGVNSVAFSPDGYLLASGSED 240 (289)
T ss_pred EccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC--ceecchhhcCCceEEEEEcCCCcEEEEEcCC
Confidence 99999998899999999999999999999999999999999999987 5566666787777666 6778888888889
Q ss_pred CcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001042 1110 NSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWE 1173 (1178)
Q Consensus 1110 g~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWd 1173 (1178)
|.|++|++.++ +....+.+|...|.+++|++++++|++++.||.|++|+
T Consensus 241 ~~i~i~~~~~~---------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 241 GTIRVWDLRTG---------------ECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CcEEEEEcCCc---------------eeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 99999998732 44455568888999999999999999999999999996
No 50
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.9e-29 Score=277.51 Aligned_cols=274 Identities=20% Similarity=0.351 Sum_probs=249.2
Q ss_pred ccCCcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeecccee
Q 001042 765 SGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVW 842 (1178)
Q Consensus 765 ~gh~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~ 842 (1178)
..+...|-++.|+|...++.++-.. |.||+.++.. .++.+.-..-+|.+..|.
T Consensus 10 ~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqt-------------------mVksfeV~~~PvRa~kfi------ 64 (794)
T KOG0276|consen 10 QSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQT-------------------MVKSFEVSEVPVRAAKFI------ 64 (794)
T ss_pred hccCCceeeeecCCCCceEEEeeecCeeEEEecccce-------------------eeeeeeecccchhhheee------
Confidence 3467889999999999998888666 9999999877 678888888999999997
Q ss_pred ccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEE--ecCCCEEEEEeCCCcEEEEECCCC-cEEEEe
Q 001042 843 DLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTS-QLLEEL 919 (1178)
Q Consensus 843 ~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~--s~d~~~l~sgs~dg~I~iwd~~t~-~~~~~l 919 (1178)
...+++++|++|..|||++.+ +.+.+..+..|.+-|.++ +|...++++++.|-+|++||.+.+ .+.+++
T Consensus 65 ------aRknWiv~GsDD~~IrVfnyn--t~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtf 136 (794)
T KOG0276|consen 65 ------ARKNWIVTGSDDMQIRVFNYN--TGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTF 136 (794)
T ss_pred ------eccceEEEecCCceEEEEecc--cceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEE
Confidence 778999999999999999965 777889999999999976 899999999999999999999865 677899
Q ss_pred cCCCCceEEEEEe--CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeC--CCCEEEEEeCCCeEEEEECCC
Q 001042 920 KGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDD--STGILAAGGRDAVANIWDIRA 995 (1178)
Q Consensus 920 ~~h~~~V~~l~~~--~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp--~~~~l~sgs~dg~I~lwD~~~ 995 (1178)
.||+..|.+++|+ +.+.+++++-|++|++|.+.+..+..++.+|...|+|+.|-+ |..++++|+.|..+++||..+
T Consensus 137 eGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt 216 (794)
T KOG0276|consen 137 EGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT 216 (794)
T ss_pred cCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecch
Confidence 9999999999999 678999999999999999999999999999999999999987 456999999999999999999
Q ss_pred CceEEEEecCCccEEEEEEcCC--EEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEE
Q 001042 996 GRQMHKFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLR 1071 (1178)
Q Consensus 996 ~~~~~~~~~~~~~v~~l~~~~~--~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~ 1071 (1178)
..|++++.+|...|..+.|++. .+++|++||+++||+..+-+...++.-.-+.++|++-.+.++.++.|...|.|.
T Consensus 217 k~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 217 KSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT 294 (794)
T ss_pred HHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEE
Confidence 9999999999999999999887 899999999999999988888888877778999999999888888888777653
No 51
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=7.3e-30 Score=271.87 Aligned_cols=317 Identities=19% Similarity=0.297 Sum_probs=250.8
Q ss_pred cccCCCcccccccCcccccCCCCC-CCCCCCCCCcccccCCcceEEEEecCCCCcccccccc--eeecccccccCCCCCC
Q 001042 729 GYWGLSSIKGQSSLSNGMPSPLSK-DATNDDQQPAEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPR 805 (1178)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~fSP~g~-~~~~~~~~~~~~~gh~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~ 805 (1178)
.|.-..++|.-++.++++.|-+-. ..+-..+....+..|...|..+.||++|++||+++.| ..+|++......
T Consensus 184 ~~Q~d~cvyhnsldsvsll~Dh~c~~~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~---- 259 (519)
T KOG0293|consen 184 KYQRDSCVYHNSLDSVSLLSDHFCGRLQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHF---- 259 (519)
T ss_pred HHHHhHhHHhcccchhhhhhhcccCcccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcce----
Confidence 344444555446666655332221 1111233334456788999999999999999999999 889988755421
Q ss_pred CCCCCcCCcccccceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEee-ccccc
Q 001042 806 KQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATL-KGHTR 884 (1178)
Q Consensus 806 ~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l-~~h~~ 884 (1178)
...+++.||..+|..+.|| ||.++|++++.|..+++||+.+ +.....+ .+|..
T Consensus 260 ------------kl~~tlvgh~~~V~yi~wS------------PDdryLlaCg~~e~~~lwDv~t--gd~~~~y~~~~~~ 313 (519)
T KOG0293|consen 260 ------------KLKKTLVGHSQPVSYIMWS------------PDDRYLLACGFDEVLSLWDVDT--GDLRHLYPSGLGF 313 (519)
T ss_pred ------------eeeeeeecccCceEEEEEC------------CCCCeEEecCchHheeeccCCc--chhhhhcccCcCC
Confidence 1678999999999999998 8999999999999999999873 3333333 23333
Q ss_pred ce--EEEecCCCEEEEEeCCCcEEEEECCCCcEEEEecCC-CCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEe
Q 001042 885 TV--RAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGH-DAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATV 960 (1178)
Q Consensus 885 ~V--~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h-~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~ 960 (1178)
.+ .+|.|||..+++|+.|+++..||++ |+.....++- ...|.+++.. +|..+++.+.|..|++++..+......+
T Consensus 314 S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~li 392 (519)
T KOG0293|consen 314 SVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLI 392 (519)
T ss_pred CcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccc
Confidence 33 3679999999999999999999987 4445555543 3568999988 8999999999999999999877665444
Q ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEE--EEEE---cCCEEEEEeCCCcEEEEEcCC
Q 001042 961 GRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIR--SIRM---DRDTVITGSDDWTARMWSISR 1035 (1178)
Q Consensus 961 ~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~--~l~~---~~~~l~sgs~dg~I~iwd~~~ 1035 (1178)
....+|++.+.|.+++++++.-.+..+++||++..+.++++.||...-. .-+| +..++++||+|+.|+||+..+
T Consensus 393 -se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~s 471 (519)
T KOG0293|consen 393 -SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRIS 471 (519)
T ss_pred -cccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccC
Confidence 4467899999999999999999999999999999999999999876433 3344 345999999999999999999
Q ss_pred CeeeeEeccCCCcEEEEEEecCC-CEEEEEeCCCcEEEEECCC
Q 001042 1036 GTCDAVLACHAGPVQCVEYSSSD-RGIITGSSDGLLRFWENDD 1077 (1178)
Q Consensus 1036 ~~~~~~~~~h~~~I~~l~~spdg-~~L~sgs~Dg~I~iwd~~~ 1077 (1178)
|+++.++.||...|++++|+|.. .++|+||.||+|+||....
T Consensus 472 gkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 472 GKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 99999999999999999999965 5689999999999997654
No 52
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=8.3e-29 Score=295.55 Aligned_cols=282 Identities=27% Similarity=0.504 Sum_probs=251.2
Q ss_pred Eeeccc-ccceE--EEecCCCEEEEEeCCCcEEEEECCCCc--EEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEe
Q 001042 877 ATLKGH-TRTVR--AINSDRGKVVSGSDDQSVLVWDKQTSQ--LLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWD 950 (1178)
Q Consensus 877 ~~l~~h-~~~V~--~~s~d~~~l~sgs~dg~I~iwd~~t~~--~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd 950 (1178)
..+.+| ...|. .++++|+.+++++.|+.+++|+..+++ ....+.+|...|.+++|+ ++..+++|+.|++|++||
T Consensus 152 ~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd 231 (456)
T KOG0266|consen 152 QTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWD 231 (456)
T ss_pred eeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEee
Confidence 344443 44555 469999999999999999999998877 777788999999999999 777999999999999999
Q ss_pred C-CCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEE--cCCEEEEEeCCCc
Q 001042 951 V-RTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM--DRDTVITGSDDWT 1027 (1178)
Q Consensus 951 ~-~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sgs~dg~ 1027 (1178)
+ ..+..++++.+|...|++++|+|+|+.+++|+.|++|++||+++++++..+.+|.+.|+++++ +++.+++++.||.
T Consensus 232 ~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~ 311 (456)
T KOG0266|consen 232 LKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGT 311 (456)
T ss_pred ccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCcc
Confidence 9 556899999999999999999999999999999999999999999999999999999999999 4569999999999
Q ss_pred EEEEEcCCCe--eeeEeccCCCc--EEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE-----ec
Q 001042 1028 ARMWSISRGT--CDAVLACHAGP--VQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI-----NA 1098 (1178)
Q Consensus 1028 I~iwd~~~~~--~~~~~~~h~~~--I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i-----s~ 1098 (1178)
|++||+.++. +...+.++... ++++.|+|++.++++++.|+.+++||+..+ .+.....+|...+.++ ++
T Consensus 312 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~--~~~~~~~~~~~~~~~~~~~~~~~ 389 (456)
T KOG0266|consen 312 IRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG--KSVGTYTGHSNLVRCIFSPTLST 389 (456)
T ss_pred EEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC--cceeeecccCCcceeEecccccC
Confidence 9999999998 56777776655 999999999999999999999999999988 7788888888764444 57
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCC-cccEEEEEEcCCCCEEEEEe--CCCcEEEEECC
Q 001042 1099 GDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKT-VAVVRCIASDLERKRICSGG--RNGLLRLWEAT 1175 (1178)
Q Consensus 1099 dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h-~~~V~~lafspdg~~Las~s--~Dg~V~IWdv~ 1175 (1178)
++.++++|+.|+.|.+||..++ ..+..+.+| ...+..++++|..+++++++ .|+.+++|...
T Consensus 390 ~~~~i~sg~~d~~v~~~~~~s~---------------~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 390 GGKLIYSGSEDGSVYVWDSSSG---------------GILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCCeEEEEeCCceEEEEeCCcc---------------chhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 9999999999999999999843 455667788 88999999999999999998 79999999864
No 53
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=1.4e-30 Score=283.92 Aligned_cols=285 Identities=22% Similarity=0.367 Sum_probs=247.9
Q ss_pred ceeeEeecccccceEEE--ec-CCCEEEEEeCCCcEEEEECCC-CcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEE
Q 001042 873 SELRATLKGHTRTVRAI--NS-DRGKVVSGSDDQSVLVWDKQT-SQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVK 947 (1178)
Q Consensus 873 ~~~~~~l~~h~~~V~~~--s~-d~~~l~sgs~dg~I~iwd~~t-~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~ 947 (1178)
...+..+.||+..|.++ .| .+.+|++++.|+.|+||++.. +++++++.+|..+|.+++|+ .+..+++++.|+.++
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lK 283 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLK 283 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeee
Confidence 45568899999999975 55 889999999999999999877 89999999999999999999 799999999999999
Q ss_pred EEeCCCCeEEEEecCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEE--cCCEEEEEeC
Q 001042 948 MWDVRTDTCVATVGRCSSAVLCMEYDDST-GILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM--DRDTVITGSD 1024 (1178)
Q Consensus 948 iwd~~~~~~~~~~~~~~~~I~~l~~sp~~-~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sgs~ 1024 (1178)
+||+++|+++..+. ....++|+.|+|++ +.+++|+.|+.|+.||+++++.++.+..|-+.|..+.| ++.++++.++
T Consensus 284 lwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSD 362 (503)
T KOG0282|consen 284 LWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSD 362 (503)
T ss_pred eeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeecc
Confidence 99999999999884 45678999999988 88999999999999999999999999999999999999 5679999999
Q ss_pred CCcEEEEEcCCCeeeeEecc-CCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCC-ceEEEEEecccCCcE----EEEec
Q 001042 1025 DWTARMWSISRGTCDAVLAC-HAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDG-GIKCVKNVTIHSSAI----LSINA 1098 (1178)
Q Consensus 1025 dg~I~iwd~~~~~~~~~~~~-h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~-~~~~~~~~~~h~~~i----~~is~ 1098 (1178)
|++++||+.+.+..++.... +.-...++..+|+++++++-+.|+.|.++.+... .....+.+.+|...- ..+||
T Consensus 363 dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp 442 (503)
T KOG0282|consen 363 DKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP 442 (503)
T ss_pred CccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcC
Confidence 99999999988766554432 2335678999999999999999999999997643 223445667786554 34489
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCC-CCEEEEEeCCCcEEEEE
Q 001042 1099 GDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLE-RKRICSGGRNGLLRLWE 1173 (1178)
Q Consensus 1099 dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspd-g~~Las~s~Dg~V~IWd 1173 (1178)
||.+|++|+.||.+.+||..+- +++..+++|.+.+..+.|+|- ...+||||.||.|++|+
T Consensus 443 DG~~l~SGdsdG~v~~wdwkt~---------------kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 443 DGRTLCSGDSDGKVNFWDWKTT---------------KLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CCCeEEeecCCccEEEeechhh---------------hhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999999999999999998743 566778899999999999995 45799999999999996
No 54
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=5.4e-28 Score=310.02 Aligned_cols=295 Identities=21% Similarity=0.331 Sum_probs=237.9
Q ss_pred EecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCC---Cc---eeeEeecccccceEE--Eec-C
Q 001042 822 IIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLR---GS---ELRATLKGHTRTVRA--INS-D 892 (1178)
Q Consensus 822 ~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~---~~---~~~~~l~~h~~~V~~--~s~-d 892 (1178)
.+.+|.+.|++++|+ ++|+++|+|+.||+|+|||.... +. .....+.+ ...+.+ +++ +
T Consensus 478 ~~~~~~~~V~~i~fs------------~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~ 544 (793)
T PLN00181 478 DLLNSSNLVCAIGFD------------RDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-RSKLSGICWNSYI 544 (793)
T ss_pred cccCCCCcEEEEEEC------------CCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc-cCceeeEEeccCC
Confidence 355699999999998 89999999999999999996521 00 11122333 334554 443 5
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe--CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEE
Q 001042 893 RGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCM 970 (1178)
Q Consensus 893 ~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~--~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l 970 (1178)
+.++++++.||+|++||+.+++.+..+.+|.+.|++++|+ ++..+++|+.||+|++||++++..+..+..+ ..+.++
T Consensus 545 ~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v 623 (793)
T PLN00181 545 KSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCV 623 (793)
T ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEE
Confidence 7899999999999999999999999999999999999998 4678999999999999999999988888654 678999
Q ss_pred EEe-CCCCEEEEEeCCCeEEEEECCCCc-eEEEEecCCccEEEEEE-cCCEEEEEeCCCcEEEEEcCC------CeeeeE
Q 001042 971 EYD-DSTGILAAGGRDAVANIWDIRAGR-QMHKFLGHTKWIRSIRM-DRDTVITGSDDWTARMWSISR------GTCDAV 1041 (1178)
Q Consensus 971 ~~s-p~~~~l~sgs~dg~I~lwD~~~~~-~~~~~~~~~~~v~~l~~-~~~~l~sgs~dg~I~iwd~~~------~~~~~~ 1041 (1178)
.|+ +++..+++|+.||.|++||+++++ .+..+.+|...|.++.| ++..+++++.|++|++||++. ..++..
T Consensus 624 ~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~ 703 (793)
T PLN00181 624 QFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHS 703 (793)
T ss_pred EEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEE
Confidence 995 579999999999999999998876 56778899999999999 567999999999999999974 356788
Q ss_pred eccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEEecCCCEEEEEeCCCcEEEEEcCCCc
Q 001042 1042 LACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRPQER 1121 (1178)
Q Consensus 1042 ~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~Lasgs~Dg~I~iwd~~~~~ 1121 (1178)
+.+|...+++++|++++++|++|+.||.|++|+...+.......+. + .+ .+
T Consensus 704 ~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~-~------------------~~-~~--------- 754 (793)
T PLN00181 704 FMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFK-T------------------ID-PV--------- 754 (793)
T ss_pred EcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecc-c------------------CC-cc---------
Confidence 8999999999999999999999999999999997654211100000 0 00 00
Q ss_pred cccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001042 1122 LGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEA 1174 (1178)
Q Consensus 1122 ~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv 1174 (1178)
.+ .....|...|.+++|+|++.+|++|+.||.|+||++
T Consensus 755 ------~~---------~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 755 ------SG---------LEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred ------cc---------cccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 00 001245567999999999999999999999999996
No 55
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.9e-28 Score=279.15 Aligned_cols=337 Identities=17% Similarity=0.312 Sum_probs=276.4
Q ss_pred CcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceeccc
Q 001042 768 GRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLV 845 (1178)
Q Consensus 768 ~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~ 845 (1178)
...+-.++|+|...++.++-.. |++||...+. ++..+.+|.|+|..++|+
T Consensus 9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~t-------------------li~rFdeHdGpVRgv~FH--------- 60 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT-------------------LIDRFDEHDGPVRGVDFH--------- 60 (1202)
T ss_pred cccccceecCCCCCEEEEeecCceeeeehhhhhh-------------------HHhhhhccCCccceeeec---------
Confidence 3456678999999999998766 9999999877 889999999999999999
Q ss_pred cccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEE--EecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCC
Q 001042 846 GDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHD 923 (1178)
Q Consensus 846 ~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~ 923 (1178)
|++.+++|||+|-.|++|+.. ...+..++.||-+.|.. |++.-.+++++|.|.+|+||++.+++++..+.||.
T Consensus 61 ---~~qplFVSGGDDykIkVWnYk--~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHn 135 (1202)
T KOG0292|consen 61 ---PTQPLFVSGGDDYKIKVWNYK--TRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHN 135 (1202)
T ss_pred ---CCCCeEEecCCccEEEEEecc--cceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCc
Confidence 889999999999999999965 77888999999999985 58888999999999999999999999999999999
Q ss_pred CceEEEEEeC-CCeEEEEeCCCeEEEEeCCC--------C---------------------eEEEEecCCCCCEEEEEEe
Q 001042 924 AQVSCVRMLS-GERVLTASHDGTVKMWDVRT--------D---------------------TCVATVGRCSSAVLCMEYD 973 (1178)
Q Consensus 924 ~~V~~l~~~~-~~~l~sgs~dg~V~iwd~~~--------~---------------------~~~~~~~~~~~~I~~l~~s 973 (1178)
..|.|..|++ .+.++++|-|.+|++||+.. + -....+.+|+..|+-++|+
T Consensus 136 HYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfh 215 (1202)
T KOG0292|consen 136 HYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFH 215 (1202)
T ss_pred eEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEec
Confidence 9999999995 88999999999999999842 1 0123457899999999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCce--EEEEecCCccEEEEEEcC--CEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcE
Q 001042 974 DSTGILAAGGRDAVANIWDIRAGRQ--MHKFLGHTKWIRSIRMDR--DTVITGSDDWTARMWSISRGTCDAVLACHAGPV 1049 (1178)
Q Consensus 974 p~~~~l~sgs~dg~I~lwD~~~~~~--~~~~~~~~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I 1049 (1178)
|.-..+++|+.|..|++|.+...+. +-+.++|.+.|.++-|++ +.+++.++|++|++||+.+.+.++++....+..
T Consensus 216 pTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRF 295 (1202)
T KOG0292|consen 216 PTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRF 295 (1202)
T ss_pred CCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeE
Confidence 9999999999999999999876553 556789999999999988 699999999999999999999999998888899
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEEecCCCEEEEEeCCCcEEEEEcCCCccccccCCC
Q 001042 1050 QCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTG 1129 (1178)
Q Consensus 1050 ~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g 1129 (1178)
+.++-+|..+.+++|...| +.+|.++.. .++.+++. +.|.-. .|..|+-+|+.+.+-
T Consensus 296 W~laahP~lNLfAAgHDsG-m~VFkleRE------------rpa~~v~~--n~LfYv-kd~~i~~~d~~t~~d------- 352 (1202)
T KOG0292|consen 296 WILAAHPELNLFAAGHDSG-MIVFKLERE------------RPAYAVNG--NGLFYV-KDRFIRSYDLRTQKD------- 352 (1202)
T ss_pred EEEEecCCcceeeeecCCc-eEEEEEccc------------CceEEEcC--CEEEEE-ccceEEeeecccccc-------
Confidence 9999999999888886544 667776532 22334433 333333 388999999875311
Q ss_pred CCccceeEeeccCCCcccEEEEEEcCCCCEEEEE
Q 001042 1130 SKMSGWQLYRTPQKTVAVVRCIASDLERKRICSG 1163 (1178)
Q Consensus 1130 ~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~ 1163 (1178)
..+ ..++.+..-..++.++.++|..+.+..+
T Consensus 353 ~~v---~~lr~~g~~~~~~~smsYNpae~~vlic 383 (1202)
T KOG0292|consen 353 TAV---ASLRRPGTLWQPPRSLSYNPAENAVLIC 383 (1202)
T ss_pred cee---EeccCCCcccCCcceeeeccccCeEEEE
Confidence 000 1122222234678889999876654444
No 56
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.1e-29 Score=267.11 Aligned_cols=282 Identities=18% Similarity=0.330 Sum_probs=240.0
Q ss_pred eEeecccccceE--EEecCCCEEEEEeCCCcEEEEECCCC---cEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEE
Q 001042 876 RATLKGHTRTVR--AINSDRGKVVSGSDDQSVLVWDKQTS---QLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMW 949 (1178)
Q Consensus 876 ~~~l~~h~~~V~--~~s~d~~~l~sgs~dg~I~iwd~~t~---~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iw 949 (1178)
.+.+..|...|+ .||++|++||+++.|.+..+|++... +..+++.+|..+|..+.|+ +++++++|+.|..+.+|
T Consensus 217 ~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 217 WQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLW 296 (519)
T ss_pred hhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeec
Confidence 467888999998 56999999999999999999987654 3467889999999999999 78889999999999999
Q ss_pred eCCCCeEEEEecC-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCC-ccEEEEEE--cCCEEEEEeCC
Q 001042 950 DVRTDTCVATVGR-CSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHT-KWIRSIRM--DRDTVITGSDD 1025 (1178)
Q Consensus 950 d~~~~~~~~~~~~-~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~-~~v~~l~~--~~~~l~sgs~d 1025 (1178)
|+.+|.+...+.. +...+.+++|.|||..+++|+.|+.+..||+.. +....+++.. ..|.+++. +|.++++.+.|
T Consensus 297 Dv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d 375 (519)
T KOG0293|consen 297 DVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG-NILGNWEGVRDPKVHDLAITYDGKYVLLVTVD 375 (519)
T ss_pred cCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc-chhhcccccccceeEEEEEcCCCcEEEEEecc
Confidence 9999998887744 367899999999999999999999999999864 4444454433 45778776 77799999999
Q ss_pred CcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE-e----cCC
Q 001042 1026 WTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI-N----AGD 1100 (1178)
Q Consensus 1026 g~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i-s----~dg 1100 (1178)
..|++++..+........ ...+|++.+.|.+|+++++.-.+..+++||+... ..+..+.||...-.-+ | .+.
T Consensus 376 ~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~--~lv~kY~Ghkq~~fiIrSCFgg~~~ 452 (519)
T KOG0293|consen 376 KKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN--KLVRKYFGHKQGHFIIRSCFGGGND 452 (519)
T ss_pred cceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchh--hHHHHhhcccccceEEEeccCCCCc
Confidence 999999988776655444 4568999999999999999999999999999955 6777888887765544 2 456
Q ss_pred CEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcC-CCCEEEEEeCCCcEEEEECCC
Q 001042 1101 HWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDL-ERKRICSGGRNGLLRLWEATI 1176 (1178)
Q Consensus 1101 ~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafsp-dg~~Las~s~Dg~V~IWdv~t 1176 (1178)
.++++||+|+.|+||+..++ +++..+.||...|++|+|+| |-.++||||+||+||||....
T Consensus 453 ~fiaSGSED~kvyIWhr~sg---------------kll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 453 KFIASGSEDSKVYIWHRISG---------------KLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred ceEEecCCCceEEEEEccCC---------------ceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 89999999999999999844 78888999999999999999 556899999999999998763
No 57
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=2.3e-28 Score=259.02 Aligned_cols=285 Identities=25% Similarity=0.442 Sum_probs=239.9
Q ss_pred CCCcccccCCcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEee
Q 001042 759 QQPAEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCV 836 (1178)
Q Consensus 759 ~~~~~~~gh~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs 836 (1178)
.++..+.-|..=|.++.-. ++++.+|++| +|+||..+. ..+++.||+++|.+++|.
T Consensus 96 P~pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk--------------------~~~~~~Ght~~ik~v~~v 153 (423)
T KOG0313|consen 96 PKPLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGK--------------------SIKTIVGHTGPIKSVAWV 153 (423)
T ss_pred CCccccccchhhhhhhccc--CceEEEeecCCeeEEEecCCc--------------------eEEEEecCCcceeeeEEE
Confidence 3555566655555555555 7899999999 999998743 578899999999999987
Q ss_pred eccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCce--eeEeecccccceEEE--ecCCCEEEEEeCCCcEEEEECCC
Q 001042 837 TKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSE--LRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQT 912 (1178)
Q Consensus 837 ~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~--~~~~l~~h~~~V~~~--s~d~~~l~sgs~dg~I~iwd~~t 912 (1178)
..+ +....++++|.|.++++|.++..... ......||...|.++ .++|..+++|+.|.++.||+..+
T Consensus 154 ~~n---------~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~ 224 (423)
T KOG0313|consen 154 IKN---------SSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVET 224 (423)
T ss_pred ecC---------CccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCC
Confidence 422 33457999999999999987743332 233445999999987 58999999999999999999321
Q ss_pred -------------------------CcEEEEecCCCCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCE
Q 001042 913 -------------------------SQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAV 967 (1178)
Q Consensus 913 -------------------------~~~~~~l~~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I 967 (1178)
+.++..+.+|.++|.++.|++...+++++.|.+|+.||+.++..+.++.+ ...+
T Consensus 225 ~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl 303 (423)
T KOG0313|consen 225 DEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSL 303 (423)
T ss_pred CccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeec-Ccce
Confidence 23456788999999999999999999999999999999999999888754 5679
Q ss_pred EEEEEeCCCCEEEEEeCCCeEEEEECCCCc---eEEEEecCCccEEEEEEcCC---EEEEEeCCCcEEEEEcCCCe-eee
Q 001042 968 LCMEYDDSTGILAAGGRDAVANIWDIRAGR---QMHKFLGHTKWIRSIRMDRD---TVITGSDDWTARMWSISRGT-CDA 1040 (1178)
Q Consensus 968 ~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~---~~~~~~~~~~~v~~l~~~~~---~l~sgs~dg~I~iwd~~~~~-~~~ 1040 (1178)
.++.++|..++|++|+.|..+++||.+++. ..+++.+|.++|.++.|++. .+++|+.|+++++||+++.+ ++.
T Consensus 304 ~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~ply 383 (423)
T KOG0313|consen 304 NCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLY 383 (423)
T ss_pred eEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcce
Confidence 999999999999999999999999999864 35678899999999999654 89999999999999999887 899
Q ss_pred EeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 001042 1041 VLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWEND 1076 (1178)
Q Consensus 1041 ~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~ 1076 (1178)
.+.+|...|.++.|.. +..+++||.|.+|+++.-.
T Consensus 384 dI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 384 DIAGHNDKVLSVDWNE-GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred eeccCCceEEEEeccC-CceEEeccCcceEEEeccc
Confidence 9999999999999984 6689999999999998644
No 58
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=3e-28 Score=289.13 Aligned_cols=273 Identities=29% Similarity=0.520 Sum_probs=249.5
Q ss_pred CCcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEE-ecccccceEEEEeeeccceec
Q 001042 767 IGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRI-IRGHAGAITALHCVTKREVWD 843 (1178)
Q Consensus 767 h~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~gH~~~V~~l~fs~~~~~~~ 843 (1178)
+...+++..|. || .+++++.+ |++||..++. .+.. +.||.+.|+++++.
T Consensus 207 ~~~~~~~~q~~-~~-~~~~~s~~~tl~~~~~~~~~-------------------~i~~~l~GH~g~V~~l~~~------- 258 (537)
T KOG0274|consen 207 DDHVVLCLQLH-DG-FFKSGSDDSTLHLWDLNNGY-------------------LILTRLVGHFGGVWGLAFP------- 258 (537)
T ss_pred Ccchhhhheee-cC-eEEecCCCceeEEeecccce-------------------EEEeeccCCCCCceeEEEe-------
Confidence 34556666888 44 66666666 9999999887 4555 99999999999995
Q ss_pred cccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCC
Q 001042 844 LVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHD 923 (1178)
Q Consensus 844 ~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~ 923 (1178)
..+.++++|+.|.++++||.. .+.+...+.+|...+.++...+..+++|+.|.+|++|++.++..+..+.+|.
T Consensus 259 -----~~~~~lvsgS~D~t~rvWd~~--sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~ 331 (537)
T KOG0274|consen 259 -----SGGDKLVSGSTDKTERVWDCS--TGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHT 331 (537)
T ss_pred -----cCCCEEEEEecCCcEEeEecC--CCcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEecccc
Confidence 568899999999999999955 7888899999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-ceEEEE
Q 001042 924 AQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAG-RQMHKF 1002 (1178)
Q Consensus 924 ~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~-~~~~~~ 1002 (1178)
++|.++... ++.+++|+.||+|++||+.+++++.++.+|...|.++.+... ..+++|+.|+.|++||+++. +++.++
T Consensus 332 ~~V~~v~~~-~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl 409 (537)
T KOG0274|consen 332 GPVNCVQLD-EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTL 409 (537)
T ss_pred ccEEEEEec-CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhh
Confidence 999999987 889999999999999999999999999999999999988766 88999999999999999999 999999
Q ss_pred ecCCccEEEEEEcCCEEEEEeCCCcEEEEEcCCCeeeeEecc-CCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 001042 1003 LGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLAC-HAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDG 1078 (1178)
Q Consensus 1003 ~~~~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~ 1078 (1178)
.+|..-+.++.+.++.+++++.||+|++||..++++++++.+ |.+.|+.+++. ...+++++.||++++||+.++
T Consensus 410 ~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~ 484 (537)
T KOG0274|consen 410 QGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSG 484 (537)
T ss_pred cCCcccccccccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccC
Confidence 999999999999999999999999999999999999999998 67889988876 567889999999999999998
No 59
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=2.1e-29 Score=274.64 Aligned_cols=283 Identities=22% Similarity=0.374 Sum_probs=244.3
Q ss_pred ceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEE--EecCCCEE
Q 001042 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKV 896 (1178)
Q Consensus 819 ~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~--~s~d~~~l 896 (1178)
.++++.||+..|+++.|.| ..+.+|++|+.|+.|+||++- ....+++++.||..+|.+ ++.+|..+
T Consensus 206 ~~~~~~gH~kgvsai~~fp-----------~~~hLlLS~gmD~~vklW~vy-~~~~~lrtf~gH~k~Vrd~~~s~~g~~f 273 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFP-----------KKGHLLLSGGMDGLVKLWNVY-DDRRCLRTFKGHRKPVRDASFNNCGTSF 273 (503)
T ss_pred heeeccCCccccchhhhcc-----------ceeeEEEecCCCceEEEEEEe-cCcceehhhhcchhhhhhhhccccCCee
Confidence 6889999999999999984 479999999999999999987 467888999999999995 68999999
Q ss_pred EEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CC-CeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeC
Q 001042 897 VSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SG-ERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDD 974 (1178)
Q Consensus 897 ~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~-~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp 974 (1178)
++++.|+.+++||+++|+++..+. ....++|+.|+ ++ +.+++|+.|+.|+.||+++++.++.+..|-+.|..+.|-+
T Consensus 274 LS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~ 352 (503)
T KOG0282|consen 274 LSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVD 352 (503)
T ss_pred eeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEcc
Confidence 999999999999999999998886 45678999998 44 7899999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceEEEE---ecCCccEEEEEEcCCEEEEEeCCCcEEEEEcCCC---eeeeEeccCC--
Q 001042 975 STGILAAGGRDAVANIWDIRAGRQMHKF---LGHTKWIRSIRMDRDTVITGSDDWTARMWSISRG---TCDAVLACHA-- 1046 (1178)
Q Consensus 975 ~~~~l~sgs~dg~I~lwD~~~~~~~~~~---~~~~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~---~~~~~~~~h~-- 1046 (1178)
+|+.+++.+.|+.+++|+.+.+-.+... ..|..+...+..++.++++-+.|..|.++.+... .....+.+|.
T Consensus 353 ~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~va 432 (503)
T KOG0282|consen 353 EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVA 432 (503)
T ss_pred CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceecc
Confidence 9999999999999999999987665443 2344444444556779999999999999986543 2334566774
Q ss_pred CcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE--ec-CCCEEEEEeCCCcEEEEE
Q 001042 1047 GPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI--NA-GDHWLGIGAADNSMSLFH 1116 (1178)
Q Consensus 1047 ~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~-dg~~Lasgs~Dg~I~iwd 1116 (1178)
+.-..+.|||||++|++|+.||.+.+||.++. ..+..+..|...++.+ +| ....+|+++.||.|++|+
T Consensus 433 Gys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~--kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 433 GYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTT--KLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CceeeEEEcCCCCeEEeecCCccEEEeechhh--hhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 44667899999999999999999999999987 6778888998888777 44 456899999999999996
No 60
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=9e-28 Score=239.03 Aligned_cols=278 Identities=24% Similarity=0.401 Sum_probs=238.2
Q ss_pred ceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEE--EecCCCEE
Q 001042 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKV 896 (1178)
Q Consensus 819 ~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~--~s~d~~~l 896 (1178)
.++++.+|.++|.++.|+ -||++.++++.|.+|++|+.. ...+++++.+|...|.. .+.|+..+
T Consensus 9 r~~~l~~~qgaV~avryN------------~dGnY~ltcGsdrtvrLWNp~--rg~liktYsghG~EVlD~~~s~Dnskf 74 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYN------------VDGNYCLTCGSDRTVRLWNPL--RGALIKTYSGHGHEVLDAALSSDNSKF 74 (307)
T ss_pred hceeecccccceEEEEEc------------cCCCEEEEcCCCceEEeeccc--ccceeeeecCCCceeeecccccccccc
Confidence 577899999999999997 899999999999999999965 67888999999999985 47899999
Q ss_pred EEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCC--eEEEEecCCCCCEEEEEEe
Q 001042 897 VSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTD--TCVATVGRCSSAVLCMEYD 973 (1178)
Q Consensus 897 ~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~--~~~~~~~~~~~~I~~l~~s 973 (1178)
++|+.|..+.+||+++|+.++.+.+|.+.|+.+.|+ +...+++|+.|.++++||.++. ++++.+....+.|.++..+
T Consensus 75 ~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~ 154 (307)
T KOG0316|consen 75 ASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA 154 (307)
T ss_pred ccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec
Confidence 999999999999999999999999999999999999 6778999999999999999875 6788888888899998885
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEE--cCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEE-
Q 001042 974 DSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM--DRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQ- 1050 (1178)
Q Consensus 974 p~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~- 1050 (1178)
+..+++|+.||+++.||++.|+....+.+| +|+++++ +++..++++.|+++++.|-.+|+.+..+++|.+.-.
T Consensus 155 --~heIvaGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eyk 230 (307)
T KOG0316|consen 155 --EHEIVAGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYK 230 (307)
T ss_pred --ccEEEeeccCCcEEEEEeecceeehhhcCC--cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceee
Confidence 556999999999999999999887776554 6888888 567999999999999999999999999999987543
Q ss_pred -EEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCc-EEEE--ecCCCEEEEEeCCCcEEEEEc
Q 001042 1051 -CVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSA-ILSI--NAGDHWLGIGAADNSMSLFHR 1117 (1178)
Q Consensus 1051 -~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~-i~~i--s~dg~~Lasgs~Dg~I~iwd~ 1117 (1178)
..+++.....+++|+.||.|.+||+.++ ..+..+..+... +.++ +|.-..+.++. ++.+..|--
T Consensus 231 ldc~l~qsdthV~sgSEDG~Vy~wdLvd~--~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~~ 298 (307)
T KOG0316|consen 231 LDCCLNQSDTHVFSGSEDGKVYFWDLVDE--TQISKLSVVSTVIVTDLSCHPTMDDFITAT-GHGDLFWYQ 298 (307)
T ss_pred eeeeecccceeEEeccCCceEEEEEeccc--eeeeeeccCCceeEEeeecccCccceeEec-CCceeceee
Confidence 4566777888999999999999999988 566667666665 5555 45555555543 345666653
No 61
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=1.5e-27 Score=283.21 Aligned_cols=278 Identities=27% Similarity=0.555 Sum_probs=248.7
Q ss_pred Eecc-cccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEEec--CCCEEEE
Q 001042 822 IIRG-HAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINS--DRGKVVS 898 (1178)
Q Consensus 822 ~l~g-H~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~--d~~~l~s 898 (1178)
.+.+ |...+.+..|. +.++++++.|++|++||.. .+......+.||.+.|+++.- .+.++++
T Consensus 202 ~~~~~~~~~~~~~q~~--------------~~~~~~~s~~~tl~~~~~~-~~~~i~~~l~GH~g~V~~l~~~~~~~~lvs 266 (537)
T KOG0274|consen 202 VLLGTDDHVVLCLQLH--------------DGFFKSGSDDSTLHLWDLN-NGYLILTRLVGHFGGVWGLAFPSGGDKLVS 266 (537)
T ss_pred eecccCcchhhhheee--------------cCeEEecCCCceeEEeecc-cceEEEeeccCCCCCceeEEEecCCCEEEE
Confidence 3444 56677887774 7889999999999999976 444444559999999998744 4899999
Q ss_pred EeCCCcEEEEECCCCcEEEEecCCCCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCE
Q 001042 899 GSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGI 978 (1178)
Q Consensus 899 gs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~ 978 (1178)
|+.|.++++||..+|++...+.+|.+.|.++.. .+..+++|+.|.+|++|++.++.++..+.+|...|.++..+ +.+
T Consensus 267 gS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~-~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~ 343 (537)
T KOG0274|consen 267 GSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI-DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPL 343 (537)
T ss_pred EecCCcEEeEecCCCcEEEEecCCCceEEEEEc-cCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCE
Confidence 999999999999999999999999999999975 45567889999999999999999999999899999999998 889
Q ss_pred EEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEcC-CEEEEEeCCCcEEEEEcCCC-eeeeEeccCCCcEEEEEEec
Q 001042 979 LAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR-DTVITGSDDWTARMWSISRG-TCDAVLACHAGPVQCVEYSS 1056 (1178)
Q Consensus 979 l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~-~~l~sgs~dg~I~iwd~~~~-~~~~~~~~h~~~I~~l~~sp 1056 (1178)
+++|+.||+|++||+.++++++.+.+|...|.++.+++ +.+++|+.|++|++||+++. +++.++.+|.+-+.++.+.
T Consensus 344 lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~- 422 (537)
T KOG0274|consen 344 LVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLR- 422 (537)
T ss_pred EEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccc-
Confidence 99999999999999999999999999999999999999 99999999999999999999 9999999999998777654
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEEecc-cCCcEEEEecCCCEEEEEeCCCcEEEEEcCCCc
Q 001042 1057 SDRGIITGSSDGLLRFWENDDGGIKCVKNVTI-HSSAILSINAGDHWLGIGAADNSMSLFHRPQER 1121 (1178)
Q Consensus 1057 dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~-h~~~i~~is~dg~~Lasgs~Dg~I~iwd~~~~~ 1121 (1178)
++.|++++.||+|++||..++ .++..+.+ |...+.++......+++++.||++++||+.++.
T Consensus 423 -~~~Lvs~~aD~~Ik~WD~~~~--~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~ 485 (537)
T KOG0274|consen 423 -DNFLVSSSADGTIKLWDAEEG--ECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSGT 485 (537)
T ss_pred -cceeEeccccccEEEeecccC--ceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEecccCc
Confidence 789999999999999999999 77788877 678898887777888999999999999998654
No 62
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=4.7e-27 Score=301.31 Aligned_cols=285 Identities=19% Similarity=0.299 Sum_probs=234.3
Q ss_pred cccCCcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccce
Q 001042 764 ASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREV 841 (1178)
Q Consensus 764 ~~gh~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~ 841 (1178)
+.+|...|.+++|+|||+++|+|+.| |+||+..+..... .........+.+ ...|.+++|++
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~-----------~~~~~~~~~~~~-~~~v~~l~~~~---- 542 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDG-----------RDIHYPVVELAS-RSKLSGICWNS---- 542 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccc-----------cccccceEEecc-cCceeeEEecc----
Confidence 45578889999999999999999988 9999986432110 000112333443 46799999974
Q ss_pred eccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEE--ec-CCCEEEEEeCCCcEEEEECCCCcEEEE
Q 001042 842 WDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NS-DRGKVVSGSDDQSVLVWDKQTSQLLEE 918 (1178)
Q Consensus 842 ~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~--s~-d~~~l~sgs~dg~I~iwd~~t~~~~~~ 918 (1178)
.++.+||+|+.||+|++||+. .......+.+|...|+++ ++ ++.+|++|+.||+|++||+.+++.+..
T Consensus 543 -------~~~~~las~~~Dg~v~lWd~~--~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~ 613 (793)
T PLN00181 543 -------YIKSQVASSNFEGVVQVWDVA--RSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGT 613 (793)
T ss_pred -------CCCCEEEEEeCCCeEEEEECC--CCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEE
Confidence 568899999999999999976 456667889999999865 54 788999999999999999999999888
Q ss_pred ecCCCCceEEEEEe--CCCeEEEEeCCCeEEEEeCCCCe-EEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Q 001042 919 LKGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTDT-CVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRA 995 (1178)
Q Consensus 919 l~~h~~~V~~l~~~--~~~~l~sgs~dg~V~iwd~~~~~-~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~ 995 (1178)
+..+ ..+.++.|+ ++..+++|+.||.|++||+++++ .+..+.+|...|.++.|. ++..+++++.|+.|++||++.
T Consensus 614 ~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~ 691 (793)
T PLN00181 614 IKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSM 691 (793)
T ss_pred EecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCC
Confidence 8754 678999996 58899999999999999998765 466778899999999997 678999999999999999974
Q ss_pred ------CceEEEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCeeeeEe-------------ccCCCcEEEEEE
Q 001042 996 ------GRQMHKFLGHTKWIRSIRMD--RDTVITGSDDWTARMWSISRGTCDAVL-------------ACHAGPVQCVEY 1054 (1178)
Q Consensus 996 ------~~~~~~~~~~~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~-------------~~h~~~I~~l~~ 1054 (1178)
.+.+..+.+|...+.+++++ +.++++|+.||.|++|+......+..+ ..|...|.+++|
T Consensus 692 ~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~w 771 (793)
T PLN00181 692 SISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCW 771 (793)
T ss_pred CccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEE
Confidence 35678889999999998885 569999999999999998765433221 234567999999
Q ss_pred ecCCCEEEEEeCCCcEEEEEC
Q 001042 1055 SSSDRGIITGSSDGLLRFWEN 1075 (1178)
Q Consensus 1055 spdg~~L~sgs~Dg~I~iwd~ 1075 (1178)
++++..|++|+.||.|++|++
T Consensus 772 s~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 772 RGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred cCCCCeEEEecCCCcEEEEec
Confidence 999999999999999999986
No 63
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=9.2e-29 Score=247.84 Aligned_cols=282 Identities=22% Similarity=0.393 Sum_probs=242.7
Q ss_pred EeecccccceEEE-----ecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEe
Q 001042 877 ATLKGHTRTVRAI-----NSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWD 950 (1178)
Q Consensus 877 ~~l~~h~~~V~~~-----s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd 950 (1178)
.+..||+.+|..+ .|+|-+|++++.||.-.+-+-++|.-+.++.+|.+.|+....+ +..+.++++.|-+-++||
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~ 87 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD 87 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence 4677899999854 5899999999999999999999999999999999999999988 666788999999999999
Q ss_pred CCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-eEEEEecCCccEEEEEE--cCCEEEEEeCCCc
Q 001042 951 VRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGR-QMHKFLGHTKWIRSIRM--DRDTVITGSDDWT 1027 (1178)
Q Consensus 951 ~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~-~~~~~~~~~~~v~~l~~--~~~~l~sgs~dg~ 1027 (1178)
.-+|..+..+ .|...|.+++|+.|.++|++|+.+..+++||++..+ +...+.+|.+.|..+-| ..+.+++++.|++
T Consensus 88 a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~t 166 (334)
T KOG0278|consen 88 AVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKT 166 (334)
T ss_pred hhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCc
Confidence 9999998887 678889999999999999999999999999998754 56778899999999999 4558888899999
Q ss_pred EEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccC-CcEEEEecCCCEEEEE
Q 001042 1028 ARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHS-SAILSINAGDHWLGIG 1106 (1178)
Q Consensus 1028 I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~-~~i~~is~dg~~Lasg 1106 (1178)
||+||.++++.++++. ...+|+++.++++|++|.++ ..+.|.+||..+- ..++...... ....+++|+...+++|
T Consensus 167 VRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf--~~lKs~k~P~nV~SASL~P~k~~fVaG 242 (334)
T KOG0278|consen 167 VRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSF--GLLKSYKMPCNVESASLHPKKEFFVAG 242 (334)
T ss_pred eEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEeccccc--cceeeccCccccccccccCCCceEEec
Confidence 9999999999999987 56789999999999977665 5677999999886 4444443221 2224568999999999
Q ss_pred eCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001042 1107 AADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATIN 1177 (1178)
Q Consensus 1107 s~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~tg 1177 (1178)
++|..++.||..+ |..+.. ..++|.++|.||.|+|||..-|+||+||+|++|.+..+
T Consensus 243 ged~~~~kfDy~T---------geEi~~-----~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 243 GEDFKVYKFDYNT---------GEEIGS-----YNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred CcceEEEEEeccC---------Cceeee-----cccCCCCceEEEEECCCCceeeccCCCceEEEEEecCC
Confidence 9999999999984 432211 24799999999999999999999999999999998765
No 64
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=1.2e-28 Score=247.14 Aligned_cols=285 Identities=24% Similarity=0.398 Sum_probs=242.0
Q ss_pred CCCCcccccCCcceEEEEec---CCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEE
Q 001042 758 DQQPAEASGIGRSWVQSMFS---REASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITA 832 (1178)
Q Consensus 758 ~~~~~~~~gh~~~i~~~aFS---pdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~ 832 (1178)
.+.|+.+.||.++|+.++|| |||-+|++++.| -++-+-++|. -+.++.||.++|++
T Consensus 4 ~~~pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgd-------------------wigtfeghkgavw~ 64 (334)
T KOG0278|consen 4 RQTPLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGD-------------------WIGTFEGHKGAVWS 64 (334)
T ss_pred ccCceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCC-------------------cEEeeeccCcceee
Confidence 46789999999999999998 489899999988 6666666666 78899999999999
Q ss_pred EEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeec-ccccceEEEecCCCEEEEEeCCCcEEEEECC
Q 001042 833 LHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLK-GHTRTVRAINSDRGKVVSGSDDQSVLVWDKQ 911 (1178)
Q Consensus 833 l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~-~h~~~V~~~s~d~~~l~sgs~dg~I~iwd~~ 911 (1178)
.+.. .+...-|+++.|-+-++||.- .+.++ ..+. .|-....+|+.|.++|++|+.+..++|+|++
T Consensus 65 ~~l~------------~na~~aasaaadftakvw~a~-tgdel-hsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln 130 (334)
T KOG0278|consen 65 ATLN------------KNATRAASAAADFTAKVWDAV-TGDEL-HSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLN 130 (334)
T ss_pred eecC------------chhhhhhhhcccchhhhhhhh-hhhhh-hhhhhhheeeeEEecccchhhhccchHHHhhhhhcc
Confidence 8875 677788999999999999965 33333 4443 3433444689999999999999999999998
Q ss_pred CCc-EEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEE
Q 001042 912 TSQ-LLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVAN 989 (1178)
Q Consensus 912 t~~-~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~ 989 (1178)
..+ +...+.+|.+.|..+.|. .++.+++++.|++|++||.+++..++++. ....|+++.++++|+++.++ ..+.|.
T Consensus 131 ~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~ 208 (334)
T KOG0278|consen 131 RPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVK 208 (334)
T ss_pred CCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe-cCceeE
Confidence 754 467889999999999998 77888899999999999999999999984 46789999999999987665 457899
Q ss_pred EEECCCCceEEEEecCCccEEEEEEcC--CEEEEEeCCCcEEEEEcCCCeeeeEe-ccCCCcEEEEEEecCCCEEEEEeC
Q 001042 990 IWDIRAGRQMHKFLGHTKWIRSIRMDR--DTVITGSDDWTARMWSISRGTCDAVL-ACHAGPVQCVEYSSSDRGIITGSS 1066 (1178)
Q Consensus 990 lwD~~~~~~~~~~~~~~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~-~~h~~~I~~l~~spdg~~L~sgs~ 1066 (1178)
+||..+...++.+.. ...|.+.+.+| ..+++|+.|..++.||..+|..+..+ ++|.++|.|+.|+|+|...++||.
T Consensus 209 Fwdaksf~~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSE 287 (334)
T KOG0278|consen 209 FWDAKSFGLLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSE 287 (334)
T ss_pred EeccccccceeeccC-ccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCC
Confidence 999999988887743 33466666644 58999999999999999999998886 899999999999999999999999
Q ss_pred CCcEEEEECCCC
Q 001042 1067 DGLLRFWENDDG 1078 (1178)
Q Consensus 1067 Dg~I~iwd~~~~ 1078 (1178)
||+|++|....+
T Consensus 288 DGTirlWQt~~~ 299 (334)
T KOG0278|consen 288 DGTIRLWQTTPG 299 (334)
T ss_pred CceEEEEEecCC
Confidence 999999998766
No 65
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=6.7e-27 Score=237.11 Aligned_cols=294 Identities=21% Similarity=0.300 Sum_probs=238.3
Q ss_pred eecccccceEEE--ecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCC
Q 001042 878 TLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTD 954 (1178)
Q Consensus 878 ~l~~h~~~V~~~--s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~ 954 (1178)
.++||..+++.+ +.+|.+|++++.|.+..+|-..+|+.+.++.+|.+.|+|+... +...+++|+.|.++++||+.+|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 467899999965 8999999999999999999999999999999999999999998 7889999999999999999999
Q ss_pred eEEEEecCCCCCEEEEEEeCCCCEEEEEeC-----CCeEEEEECC-------CCceEEEEecCCccEEEEEEc--CCEEE
Q 001042 955 TCVATVGRCSSAVLCMEYDDSTGILAAGGR-----DAVANIWDIR-------AGRQMHKFLGHTKWIRSIRMD--RDTVI 1020 (1178)
Q Consensus 955 ~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~-----dg~I~lwD~~-------~~~~~~~~~~~~~~v~~l~~~--~~~l~ 1020 (1178)
+++..++ ....|..+.|+.+|++++..+. .+.|.++|++ ..++...+..+.+.++..-|+ ++.|+
T Consensus 85 k~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii 163 (327)
T KOG0643|consen 85 KQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETII 163 (327)
T ss_pred cEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEE
Confidence 9999884 4678999999999998887753 4679999998 455678888888999999995 56999
Q ss_pred EEeCCCcEEEEEcCCCe-eeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcE--EEEe
Q 001042 1021 TGSDDWTARMWSISRGT-CDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAI--LSIN 1097 (1178)
Q Consensus 1021 sgs~dg~I~iwd~~~~~-~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i--~~is 1097 (1178)
+|.+||.|.+||+++|+ .+.....|...|+.+.+++|..++++++.|.+-++||+.+- .+++++... .++ .+++
T Consensus 164 ~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl--~v~Kty~te-~PvN~aais 240 (327)
T KOG0643|consen 164 AGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL--EVLKTYTTE-RPVNTAAIS 240 (327)
T ss_pred EecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce--eeEEEeeec-ccccceecc
Confidence 99999999999999984 45556789999999999999999999999999999999986 666666532 333 4558
Q ss_pred cCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001042 1098 AGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATI 1176 (1178)
Q Consensus 1098 ~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~t 1176 (1178)
|..+.++.|+.....-+=-...+ ...|...--....-+.+...++|-++|++|+|+|||+..+|||+||.||+...+.
T Consensus 241 P~~d~VilgGGqeA~dVTTT~~r-~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 241 PLLDHVILGGGQEAMDVTTTSTR-AGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred cccceEEecCCceeeeeeeeccc-ccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 88888888765444433222211 0000000000000133556789999999999999999999999999999987654
No 66
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.2e-27 Score=273.01 Aligned_cols=272 Identities=17% Similarity=0.329 Sum_probs=244.6
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCC
Q 001042 888 AINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSA 966 (1178)
Q Consensus 888 ~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~ 966 (1178)
+|+|...+++++-..|.|++||.+-+.++..+..|.++|..++|+ ....+++|+.|-.|++|+.++.+|+.++.+|-+.
T Consensus 16 sFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDY 95 (1202)
T KOG0292|consen 16 SFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDY 95 (1202)
T ss_pred ecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccce
Confidence 578999999999999999999999999999999999999999999 6789999999999999999999999999999999
Q ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEcC--CEEEEEeCCCcEEEEEcCC--------C
Q 001042 967 VLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR--DTVITGSDDWTARMWSISR--------G 1036 (1178)
Q Consensus 967 I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~--------~ 1036 (1178)
|+.+.|++.-.++++++.|.+|++|+..+++++..+.+|...|.|..|+| +.++++|-|.+||+||+.. +
T Consensus 96 VRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg 175 (1202)
T KOG0292|consen 96 VRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPG 175 (1202)
T ss_pred eEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCC
Confidence 99999999999999999999999999999999999999999999999976 5999999999999999852 1
Q ss_pred ---------------------eeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEE
Q 001042 1037 ---------------------TCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILS 1095 (1178)
Q Consensus 1037 ---------------------~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~ 1095 (1178)
-....+.+|...|+.++|+|.-..+++|+.|..|++|..+..+.-.+.+..+|.+.|.+
T Consensus 176 ~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVss 255 (1202)
T KOG0292|consen 176 SLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSS 255 (1202)
T ss_pred CchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcce
Confidence 01345678999999999999999999999999999999987766677788999999988
Q ss_pred E--ecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001042 1096 I--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWE 1173 (1178)
Q Consensus 1096 i--s~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWd 1173 (1178)
+ +|..+.+++.|+|++|++||+... +.+.+++...+..+.++-+|..+++|.| .|+-+.|+.
T Consensus 256 vlfhp~q~lIlSnsEDksirVwDm~kR---------------t~v~tfrrendRFW~laahP~lNLfAAg-HDsGm~VFk 319 (1202)
T KOG0292|consen 256 VLFHPHQDLILSNSEDKSIRVWDMTKR---------------TSVQTFRRENDRFWILAAHPELNLFAAG-HDSGMIVFK 319 (1202)
T ss_pred EEecCccceeEecCCCccEEEEecccc---------------cceeeeeccCCeEEEEEecCCcceeeee-cCCceEEEE
Confidence 7 788899999999999999999854 4455666667789999999999988866 566666776
Q ss_pred CC
Q 001042 1174 AT 1175 (1178)
Q Consensus 1174 v~ 1175 (1178)
++
T Consensus 320 le 321 (1202)
T KOG0292|consen 320 LE 321 (1202)
T ss_pred Ec
Confidence 65
No 67
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=9.3e-27 Score=246.84 Aligned_cols=278 Identities=21% Similarity=0.355 Sum_probs=237.7
Q ss_pred ccccceEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CC---CeEEEEeCCCeEEEEeCCCCeE
Q 001042 881 GHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SG---ERVLTASHDGTVKMWDVRTDTC 956 (1178)
Q Consensus 881 ~h~~~V~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~---~~l~sgs~dg~V~iwd~~~~~~ 956 (1178)
-|...|.++.-.++.+++|+.||.+++||.. |+....+.+|.+++.+++|. .+ ..+++++.|.++++|-.+.++.
T Consensus 103 ~hdDWVSsv~~~~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~ 181 (423)
T KOG0313|consen 103 LHDDWVSSVKGASKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGEN 181 (423)
T ss_pred cchhhhhhhcccCceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchh
Confidence 3777787776668999999999999999965 89999999999999999887 33 3599999999999999887753
Q ss_pred E----EEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC-------------------------CCceEEEEecCCc
Q 001042 957 V----ATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIR-------------------------AGRQMHKFLGHTK 1007 (1178)
Q Consensus 957 ~----~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~-------------------------~~~~~~~~~~~~~ 1007 (1178)
. ..-.+|...|.+++..++|..+++|+.|.+|.+|+.. ++.++..+.+|..
T Consensus 182 ~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~ 261 (423)
T KOG0313|consen 182 KVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTE 261 (423)
T ss_pred hhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccccc
Confidence 2 3334899999999999999999999999999999932 1234667889999
Q ss_pred cEEEEEE-cCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCc-eEEEEE
Q 001042 1008 WIRSIRM-DRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGG-IKCVKN 1085 (1178)
Q Consensus 1008 ~v~~l~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~-~~~~~~ 1085 (1178)
+|.++.| +...+++++.|.+|+.||+.++..+.++.+ ...++++.++|..++|++|+.|..+++||.+++. .....+
T Consensus 262 ~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s 340 (423)
T KOG0313|consen 262 PVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQS 340 (423)
T ss_pred ceeeEEEcCCCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEe
Confidence 9999999 456899999999999999999999888874 5679999999999999999999999999998763 355678
Q ss_pred ecccCCcEEEE--ec-CCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEE
Q 001042 1086 VTIHSSAILSI--NA-GDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICS 1162 (1178)
Q Consensus 1086 ~~~h~~~i~~i--s~-dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las 1162 (1178)
+.+|.+.|.++ +| +...+++|+.|+++++||+.+. +..+..+.+|.+.|.++.|.. +..|+|
T Consensus 341 ~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~--------------k~plydI~~h~DKvl~vdW~~-~~~IvS 405 (423)
T KOG0313|consen 341 LIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST--------------KAPLYDIAGHNDKVLSVDWNE-GGLIVS 405 (423)
T ss_pred eecchhhhhheecCCCCceEEEEEecCCeEEEEEeccC--------------CCcceeeccCCceEEEEeccC-CceEEe
Confidence 89999999887 45 5568999999999999999742 146677889999999999974 668999
Q ss_pred EeCCCcEEEEECC
Q 001042 1163 GGRNGLLRLWEAT 1175 (1178)
Q Consensus 1163 ~s~Dg~V~IWdv~ 1175 (1178)
||.|.+|+|+.-.
T Consensus 406 GGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 406 GGADNKLRIFKGS 418 (423)
T ss_pred ccCcceEEEeccc
Confidence 9999999998754
No 68
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=5.1e-27 Score=241.71 Aligned_cols=305 Identities=21% Similarity=0.356 Sum_probs=239.5
Q ss_pred CCCCcccccCCcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCccc-ccceEEecccccceEEEE
Q 001042 758 DQQPAEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKI-QSNIRIIRGHAGAITALH 834 (1178)
Q Consensus 758 ~~~~~~~~gh~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~gH~~~V~~l~ 834 (1178)
.....-...|..+..+.+|||||.++|+|+.| |+|.|++.--... .......+.... ...+++|-.|..+|+++.
T Consensus 102 ~yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks--~~~em~~~~~qa~hPvIRTlYDH~devn~l~ 179 (430)
T KOG0640|consen 102 EYETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKS--KPKEMISGDTQARHPVIRTLYDHVDEVNDLD 179 (430)
T ss_pred ccceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhc--chhhhccCCcccCCceEeehhhccCccccee
Confidence 34455567888888888999999999999999 9999998321100 001111111111 257899999999999999
Q ss_pred eeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceE--EEecCCCEEEEEeCCCcEEEEECCC
Q 001042 835 CVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKVVSGSDDQSVLVWDKQT 912 (1178)
Q Consensus 835 fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~--~~s~d~~~l~sgs~dg~I~iwd~~t 912 (1178)
|+ |....|++|+.|++|+++|+.....+.....-....+|. +++|.|.++++|....++++||+++
T Consensus 180 FH------------Pre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T 247 (430)
T KOG0640|consen 180 FH------------PRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNT 247 (430)
T ss_pred ec------------chhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccc
Confidence 99 789999999999999999987433322222222334555 4689999999999999999999999
Q ss_pred CcEEEEe---cCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecC-C-CCCEEEEEEeCCCCEEEEEeCCC
Q 001042 913 SQLLEEL---KGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGR-C-SSAVLCMEYDDSTGILAAGGRDA 986 (1178)
Q Consensus 913 ~~~~~~l---~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~-~-~~~I~~l~~sp~~~~l~sgs~dg 986 (1178)
-++...- ..|++.|+++.++ .++..++|+.||.|++||--+++|+.++.. | ...|.+..|..+|+++++.+.|.
T Consensus 248 ~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS 327 (430)
T KOG0640|consen 248 YQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDS 327 (430)
T ss_pred eeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcc
Confidence 8886543 4699999999999 788999999999999999999999988853 3 45799999999999999999999
Q ss_pred eEEEEECCCCceEEEEecCCc-----cEEEEEEc--CCEEEEEe-CCCcEEEEEcCCCeeeeEec-cCCCcEEEEEEecC
Q 001042 987 VANIWDIRAGRQMHKFLGHTK-----WIRSIRMD--RDTVITGS-DDWTARMWSISRGTCDAVLA-CHAGPVQCVEYSSS 1057 (1178)
Q Consensus 987 ~I~lwD~~~~~~~~~~~~~~~-----~v~~l~~~--~~~l~sgs-~dg~I~iwd~~~~~~~~~~~-~h~~~I~~l~~spd 1057 (1178)
.+++|.+.+++++..+.+... --+...|+ .++++.-. ..+.+.-||.+++..+..+. +|.+.+..+.-||.
T Consensus 328 ~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~ 407 (430)
T KOG0640|consen 328 TVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPV 407 (430)
T ss_pred eeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCC
Confidence 999999999999999876421 11223343 34555544 45779999999887665554 79999999999999
Q ss_pred CCEEEEEeCCCcEEEEECC
Q 001042 1058 DRGIITGSSDGLLRFWEND 1076 (1178)
Q Consensus 1058 g~~L~sgs~Dg~I~iwd~~ 1076 (1178)
+.-+.+|+.|-.+++|--+
T Consensus 408 ~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 408 EPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred CCceeeecccceeeeeeec
Confidence 9999999999999999643
No 69
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=4.1e-26 Score=231.46 Aligned_cols=285 Identities=20% Similarity=0.309 Sum_probs=233.8
Q ss_pred CCcccccCCcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeee
Q 001042 760 QPAEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVT 837 (1178)
Q Consensus 760 ~~~~~~gh~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~ 837 (1178)
+|+.+.||.+++.++.|..+|.+|.+|+.| +.||-..+|+ .+.++.||+++|+|++..
T Consensus 2 rpi~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe-------------------rlGty~GHtGavW~~Did- 61 (327)
T KOG0643|consen 2 RPILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE-------------------RLGTYDGHTGAVWCCDID- 61 (327)
T ss_pred CccccccCccccceEEecCCCcEEEEecCCCCceEEEecCCc-------------------eeeeecCCCceEEEEEec-
Confidence 467889999999999999999999999999 9999988888 788999999999999986
Q ss_pred ccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecc-cccceEEEecCCCEEEEEeC-----CCcEEEEECC
Q 001042 838 KREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKG-HTRTVRAINSDRGKVVSGSD-----DQSVLVWDKQ 911 (1178)
Q Consensus 838 ~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~-h~~~V~~~s~d~~~l~sgs~-----dg~I~iwd~~ 911 (1178)
-+.+.++||+.|.++++||++ .++.+..++. -......|+.+|++++.+.. .+.|.++|++
T Consensus 62 -----------~~s~~liTGSAD~t~kLWDv~--tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~ 128 (327)
T KOG0643|consen 62 -----------WDSKHLITGSADQTAKLWDVE--TGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIR 128 (327)
T ss_pred -----------CCcceeeeccccceeEEEEcC--CCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEcc
Confidence 789999999999999999988 3333344432 22233367999998887754 4789999987
Q ss_pred -------CCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCe-EEEEecCCCCCEEEEEEeCCCCEEEEE
Q 001042 912 -------TSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDT-CVATVGRCSSAVLCMEYDDSTGILAAG 982 (1178)
Q Consensus 912 -------t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~-~~~~~~~~~~~I~~l~~sp~~~~l~sg 982 (1178)
+.++...+..+...++.+-|. -+..+++|..||.|..||+++|+ .+.....|...|+.+.++++..+++++
T Consensus 129 ~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~ 208 (327)
T KOG0643|consen 129 DDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITG 208 (327)
T ss_pred CChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEec
Confidence 456678888889999999999 68899999999999999999985 456667889999999999999999999
Q ss_pred eCCCeEEEEECCCCceEEEEecCCccEEEEEEcCC--EEEEEe-CCC-cEEEEEcCCC------------eeeeEeccCC
Q 001042 983 GRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD--TVITGS-DDW-TARMWSISRG------------TCDAVLACHA 1046 (1178)
Q Consensus 983 s~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~--~l~sgs-~dg-~I~iwd~~~~------------~~~~~~~~h~ 1046 (1178)
+.|.+-++||.++.+.++++. ...+|++.++.|. .++.|+ .+- .|.-=+.+.| +.+..+++|-
T Consensus 209 s~Dttakl~D~~tl~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHF 287 (327)
T KOG0643|consen 209 SKDTTAKLVDVRTLEVLKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHF 287 (327)
T ss_pred ccCccceeeeccceeeEEEee-ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccc
Confidence 999999999999999998884 4568888888663 455444 321 1222222222 3456778999
Q ss_pred CcEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 001042 1047 GPVQCVEYSSSDRGIITGSSDGLLRFWENDDG 1078 (1178)
Q Consensus 1047 ~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~ 1078 (1178)
++|++++|+|+|+..++|+.||.|++...+..
T Consensus 288 GPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 288 GPINSVAFHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred cCcceeEECCCCcccccCCCCceEEEEEeccc
Confidence 99999999999999999999999999876543
No 70
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=6.1e-26 Score=229.67 Aligned_cols=280 Identities=20% Similarity=0.349 Sum_probs=237.2
Q ss_pred EeecccccceEE--EecCCCEEEEEeCCCcEEEEECCCCcEEE--EecCCCCceEEEEEe--CCCeEEEEeCCCeEEEEe
Q 001042 877 ATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLLE--ELKGHDAQVSCVRML--SGERVLTASHDGTVKMWD 950 (1178)
Q Consensus 877 ~~l~~h~~~V~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~--~l~~h~~~V~~l~~~--~~~~l~sgs~dg~V~iwd 950 (1178)
+.+.+|...+.+ ++.+|..+++|+.|+++.+|+++..+... ...+|.+.|..++|. ..+.+++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 456778888775 57899999999999999999998875544 456899999999998 578899999999999999
Q ss_pred CCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEE--cCCEEEEEeCCCcE
Q 001042 951 VRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM--DRDTVITGSDDWTA 1028 (1178)
Q Consensus 951 ~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sgs~dg~I 1028 (1178)
++++++...+....+.+ -+.|+|+|+++++++.|..|...|.++.+.+...+ ....+..++| ++++++.....|.|
T Consensus 94 ~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v 171 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCV 171 (313)
T ss_pred eccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceE
Confidence 99999998886554444 58899999999999999999999999988776653 3344566666 55677777788999
Q ss_pred EEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE--ecCCCEEEEE
Q 001042 1029 RMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI--NAGDHWLGIG 1106 (1178)
Q Consensus 1029 ~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~dg~~Lasg 1106 (1178)
.|.....-+++.++++|.....|+.|+|+|+++|+|+.|..+.+||++.- .|+..+..+.-+|..+ |.||++||+|
T Consensus 172 ~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL--iC~R~isRldwpVRTlSFS~dg~~lASa 249 (313)
T KOG1407|consen 172 EILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL--ICERCISRLDWPVRTLSFSHDGRMLASA 249 (313)
T ss_pred EEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHh--hhheeeccccCceEEEEeccCcceeecc
Confidence 99999999999999999999999999999999999999999999999875 8888898888888665 7899999999
Q ss_pred eCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCC---------CcEEEEECCC
Q 001042 1107 AADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRN---------GLLRLWEATI 1176 (1178)
Q Consensus 1107 s~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~D---------g~V~IWdv~t 1176 (1178)
|+|..|-|-+++ +|.++ |+. .+.++...|+|+|...+||-+++| |+|+++-+.+
T Consensus 250 SEDh~IDIA~ve---------tGd~~--~eI-----~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~~ 312 (313)
T KOG1407|consen 250 SEDHFIDIAEVE---------TGDRV--WEI-----PCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLSN 312 (313)
T ss_pred CccceEEeEecc---------cCCeE--EEe-----eccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCCC
Confidence 999999998888 55443 222 456788999999999999988754 6788886654
No 71
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=2.8e-27 Score=244.24 Aligned_cols=265 Identities=20% Similarity=0.356 Sum_probs=231.8
Q ss_pred ccCCCCEEEEEeCCCcEEEEcCCCCCceeeE--------eecccccceEEE--ecCCCEEEEEeCCCcEEEEECCCCcEE
Q 001042 847 DREDAGFFISGSTDCLVKIWDPSLRGSELRA--------TLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQLL 916 (1178)
Q Consensus 847 ~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~--------~l~~h~~~V~~~--s~d~~~l~sgs~dg~I~iwd~~t~~~~ 916 (1178)
|||||++|++|+.||-|.+||.. .+++.+ .+--+..+|.|+ +.|...+++|+.||.|++|.+.+|+++
T Consensus 221 FSPDgqyLvsgSvDGFiEVWny~--~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~Cl 298 (508)
T KOG0275|consen 221 FSPDGQYLVSGSVDGFIEVWNYT--TGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCL 298 (508)
T ss_pred eCCCCceEeeccccceeeeehhc--cchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHH
Confidence 34999999999999999999965 333333 233466777764 789999999999999999999999999
Q ss_pred EEec-CCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 001042 917 EELK-GHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIR 994 (1178)
Q Consensus 917 ~~l~-~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~ 994 (1178)
+.+. .|+..|+|+.|+ ++..+++++.|.++++.-+++|++++.+.+|.+.|+...|.++|..+++++.||+|++|+.+
T Consensus 299 RrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~K 378 (508)
T KOG0275|consen 299 RRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGK 378 (508)
T ss_pred HHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCc
Confidence 9987 899999999999 88999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEecC--CccEEEEEE---cCCEEEEEeCCCcEEEEEcCCCeeeeEecc---CCCcEEEEEEecCCCEEEEEeC
Q 001042 995 AGRQMHKFLGH--TKWIRSIRM---DRDTVITGSDDWTARMWSISRGTCDAVLAC---HAGPVQCVEYSSSDRGIITGSS 1066 (1178)
Q Consensus 995 ~~~~~~~~~~~--~~~v~~l~~---~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---h~~~I~~l~~spdg~~L~sgs~ 1066 (1178)
+.+++.+++.. ..+|.++.. ++..++++....+|++.++ .|+.++++.. ..+...+.+.||.|.++.+.+.
T Consensus 379 tteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigE 457 (508)
T KOG0275|consen 379 TTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGE 457 (508)
T ss_pred chhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEcc
Confidence 99999888643 446777766 6679999999999999997 4777777763 2456777889999999999999
Q ss_pred CCcEEEEECCCCceEEEEEecccCCcEEEE--ecCCCEEEEEeCCCcEEEEE
Q 001042 1067 DGLLRFWENDDGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFH 1116 (1178)
Q Consensus 1067 Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~dg~~Lasgs~Dg~I~iwd 1116 (1178)
|+.++.+.+.+| .....+..|...+..+ +|..+.+|+-++||.+++|.
T Consensus 458 D~vlYCF~~~sG--~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 458 DGVLYCFSVLSG--KLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred CcEEEEEEeecC--ceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 999999999999 5566777888888887 68999999999999999995
No 72
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=5.8e-25 Score=253.29 Aligned_cols=382 Identities=16% Similarity=0.217 Sum_probs=286.1
Q ss_pred ccCCcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeecccee
Q 001042 765 SGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVW 842 (1178)
Q Consensus 765 ~gh~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~ 842 (1178)
.+|...|.-. -|=|.++.++..+ +.||+..+.++... ..+..++.-.+.|+++. +|.
T Consensus 111 ~~~~a~v~~l--~~fGe~lia~d~~~~l~vw~~s~~~~e~~--------------l~~~~~~~~~~~Ital~-HP~---- 169 (910)
T KOG1539|consen 111 LLHGAKVHLL--LPFGEHLIAVDISNILFVWKTSSIQEELY--------------LQSTFLKVEGDFITALL-HPS---- 169 (910)
T ss_pred ccccceEEEE--eeecceEEEEEccCcEEEEEecccccccc--------------ccceeeeccCCceeeEe-cch----
Confidence 4444343332 3345666666555 99999887522100 01222333333388875 331
Q ss_pred ccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEE--ecCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 001042 843 DLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQLLEELK 920 (1178)
Q Consensus 843 ~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~--s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~ 920 (1178)
-.-+.++.|+.+|.+.+|++. ..+.+.+++++...|+++ +|--+.++.|..+|+|.+++++.++.+.+++
T Consensus 170 ------TYLNKIvvGs~~G~lql~Nvr--t~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk 241 (910)
T KOG1539|consen 170 ------TYLNKIVVGSSQGRLQLWNVR--TGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFK 241 (910)
T ss_pred ------hheeeEEEeecCCcEEEEEec--cCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEE
Confidence 334678999999999999987 677889999999999998 6777889999999999999999999999999
Q ss_pred CCCCceEEEEEe-CCC-eEEEEeCCCeEEEEeCCCCeEEEEec-CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-
Q 001042 921 GHDAQVSCVRML-SGE-RVLTASHDGTVKMWDVRTDTCVATVG-RCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAG- 996 (1178)
Q Consensus 921 ~h~~~V~~l~~~-~~~-~l~sgs~dg~V~iwd~~~~~~~~~~~-~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~- 996 (1178)
...+.|+.++|. ||. .+++|+..|.+.+||++..+.+..+. .|.+.+....|-+....+++++.|+.+++|=..++
T Consensus 242 ~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~d 321 (910)
T KOG1539|consen 242 QDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGD 321 (910)
T ss_pred ccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCC
Confidence 667999999999 554 57778888999999999888776665 67799999999999999999999998888855543
Q ss_pred ---ceEEEEecCCccEEEEEEc---CCEEEEEeCCCcEEEEEc-------------------------------------
Q 001042 997 ---RQMHKFLGHTKWIRSIRMD---RDTVITGSDDWTARMWSI------------------------------------- 1033 (1178)
Q Consensus 997 ---~~~~~~~~~~~~v~~l~~~---~~~l~sgs~dg~I~iwd~------------------------------------- 1033 (1178)
+.++.-.+|..+..++.+. +..+.+++.|++.+.+++
T Consensus 322 g~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~f 401 (910)
T KOG1539|consen 322 GVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEF 401 (910)
T ss_pred CcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceee
Confidence 3355556788887777773 346777777776665543
Q ss_pred ----------------------------CCCee-eeEec-----cCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 001042 1034 ----------------------------SRGTC-DAVLA-----CHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGG 1079 (1178)
Q Consensus 1034 ----------------------------~~~~~-~~~~~-----~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~ 1079 (1178)
++... ...+. .....+++++.++.|++.+.|.+.|.|-+|++.+|
T Consensus 402 a~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSG- 480 (910)
T KOG1539|consen 402 AFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSG- 480 (910)
T ss_pred ecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccC-
Confidence 22111 11111 11256889999999999999999999999999999
Q ss_pred eEEEEEe---cccCCcEEEEecCC--CEEEEEeCCCcEEEEEcCCCccccccCCCCCccc--------------------
Q 001042 1080 IKCVKNV---TIHSSAILSINAGD--HWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSG-------------------- 1134 (1178)
Q Consensus 1080 ~~~~~~~---~~h~~~i~~is~dg--~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~-------------------- 1134 (1178)
.....+ ..|..+|+.++-|+ +.+++++.+|.+.+||..++.+.....-|..+..
T Consensus 481 -i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~ 559 (910)
T KOG1539|consen 481 -IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIR 559 (910)
T ss_pred -eeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEE
Confidence 555666 58999999997665 5699999999999999987654322222221111
Q ss_pred ------eeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001042 1135 ------WQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATIN 1177 (1178)
Q Consensus 1135 ------~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~tg 1177 (1178)
-+..+.+.||.+.|++++|||||++|++++.|++||+||+.||
T Consensus 560 vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~ 608 (910)
T KOG1539|consen 560 VVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTG 608 (910)
T ss_pred EEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCc
Confidence 1345677899999999999999999999999999999999987
No 73
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.3e-26 Score=256.95 Aligned_cols=324 Identities=20% Similarity=0.368 Sum_probs=254.3
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCCce----eeEeecccccceEEE--ecCCCEEEEEeCCCcEEEEECCCC--cEEEEec
Q 001042 849 EDAGFFISGSTDCLVKIWDPSLRGSE----LRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTS--QLLEELK 920 (1178)
Q Consensus 849 ~d~~~Lasgs~Dg~I~iWd~~~~~~~----~~~~l~~h~~~V~~~--s~d~~~l~sgs~dg~I~iwd~~t~--~~~~~l~ 920 (1178)
|.+++|.|||.||.|++|++.....+ ....++.|...|..+ ..+++.+++++.|-+|++|+...+ -+..++.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir 114 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR 114 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence 78889999999999999998744443 456788899999965 678889999999999999999887 5777889
Q ss_pred CCCCceEEEEEe--CCCeEEEEeCCCeEEEEeCCCCeE--E--------EEec-CCCCCEEEEEEeCCCCEEEEEeCCCe
Q 001042 921 GHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTDTC--V--------ATVG-RCSSAVLCMEYDDSTGILAAGGRDAV 987 (1178)
Q Consensus 921 ~h~~~V~~l~~~--~~~~l~sgs~dg~V~iwd~~~~~~--~--------~~~~-~~~~~I~~l~~sp~~~~l~sgs~dg~ 987 (1178)
.|.+.|.|+++. +...+++||-|+.|.+||+.++.. + ..+. ++...|.+++.++.|..+++|+..+.
T Consensus 115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~ 194 (735)
T KOG0308|consen 115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKD 194 (735)
T ss_pred cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccc
Confidence 999999999994 778899999999999999998722 2 2223 67889999999999999999999999
Q ss_pred EEEEECCCCceEEEEecCCccEEEEEE--cCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEe
Q 001042 988 ANIWDIRAGRQMHKFLGHTKWIRSIRM--DRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGS 1065 (1178)
Q Consensus 988 I~lwD~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs 1065 (1178)
+++||.++++.+..+++|+..|.++-. +|..++++|.||+|++||+...+|+.++..|...|+++..+|+-..+.+|+
T Consensus 195 lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~ 274 (735)
T KOG0308|consen 195 LRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGG 274 (735)
T ss_pred eEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecC
Confidence 999999999999999999999999988 567999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEECCCCceEEEEEecccCCcEEEE--ecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEe-----
Q 001042 1066 SDGLLRFWENDDGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLY----- 1138 (1178)
Q Consensus 1066 ~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~----- 1138 (1178)
.||.|..=|+.+.. .+.... ....++..+ +...+-+.+++.|+.|+-|...-.- .....|.....+...
T Consensus 275 rd~~i~~Tdl~n~~-~~tlic-k~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~--~l~~s~~~~~~~T~~~~~~~ 350 (735)
T KOG0308|consen 275 RDGNIYRTDLRNPA-KSTLIC-KEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDI--ALSVSGDLDFFSTDSNNHSC 350 (735)
T ss_pred CCCcEEecccCCch-hheEee-cCCCchhhhhhccccCCceeeeccccceecCCcccc--ccccCCCCCcccccCCCccc
Confidence 99999999998852 122111 123333333 3233444778899999999765321 111111111111110
Q ss_pred ec-------cCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001042 1139 RT-------PQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATIN 1177 (1178)
Q Consensus 1139 ~~-------~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~tg 1177 (1178)
.. ..| ..+|..-+.-.|.+.++|-+.+|.+.+||+-.+
T Consensus 351 ~~~~tp~~vi~G-g~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~ 395 (735)
T KOG0308|consen 351 DLTNTPDSVIPG-GAAIKKHAMLNDKRHVLTKDAKGNVALWDILAC 395 (735)
T ss_pred cccCCCceeccC-chhhhhhhhhcCcceEeeecCCCCEEEEEeeee
Confidence 00 111 123444556678899999999999999998643
No 74
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=6.4e-27 Score=241.61 Aligned_cols=268 Identities=21% Similarity=0.388 Sum_probs=234.2
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCcEEEEe--------cCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEE
Q 001042 888 AINSDRGKVVSGSDDQSVLVWDKQTSQLLEEL--------KGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVA 958 (1178)
Q Consensus 888 ~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l--------~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~ 958 (1178)
.|+|||++|++|+.||.|.+||..+|+..+.+ .-+..+|.|+.|+ +...+++|+.||.|++|.+.+|.|++
T Consensus 220 ~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClR 299 (508)
T KOG0275|consen 220 RFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLR 299 (508)
T ss_pred eeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHH
Confidence 48999999999999999999999999875543 3478899999999 88899999999999999999999999
Q ss_pred Eec-CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEE--cCCEEEEEeCCCcEEEEEcCC
Q 001042 959 TVG-RCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM--DRDTVITGSDDWTARMWSISR 1035 (1178)
Q Consensus 959 ~~~-~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~ 1035 (1178)
.+. .|...|+|+.|+.|+..+++++.|.++++.-+++|++++.+++|...|+...| +|+.+++++.||+|++|+.++
T Consensus 300 rFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Kt 379 (508)
T KOG0275|consen 300 RFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKT 379 (508)
T ss_pred HhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcc
Confidence 886 78999999999999999999999999999999999999999999999999998 677999999999999999999
Q ss_pred CeeeeEecc--CCCcEEEEEEecC-CCEEEEEeCCCcEEEEECCCCceEEEEEeccc----CCcEEE-EecCCCEEEEEe
Q 001042 1036 GTCDAVLAC--HAGPVQCVEYSSS-DRGIITGSSDGLLRFWENDDGGIKCVKNVTIH----SSAILS-INAGDHWLGIGA 1107 (1178)
Q Consensus 1036 ~~~~~~~~~--h~~~I~~l~~spd-g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h----~~~i~~-is~dg~~Lasgs 1107 (1178)
++|+.+++. ...+|+++..-|. -..++.+...++|.+.++.. +.++.+... ..-|.+ +||.|.++.+.+
T Consensus 380 teC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG---QvVrsfsSGkREgGdFi~~~lSpkGewiYcig 456 (508)
T KOG0275|consen 380 TECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG---QVVRSFSSGKREGGDFINAILSPKGEWIYCIG 456 (508)
T ss_pred hhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc---eEEeeeccCCccCCceEEEEecCCCcEEEEEc
Confidence 999999874 4557888877664 45688888899999999875 445544321 223444 499999999999
Q ss_pred CCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001042 1108 ADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWE 1173 (1178)
Q Consensus 1108 ~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWd 1173 (1178)
+|+.++.|...++ .+.+++.-|...|-.++-+|..+.||+-++||.+++|.
T Consensus 457 ED~vlYCF~~~sG---------------~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 457 EDGVLYCFSVLSG---------------KLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cCcEEEEEEeecC---------------ceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 9999999999854 55666777888899999999999999999999999996
No 75
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=1.6e-26 Score=247.38 Aligned_cols=282 Identities=23% Similarity=0.394 Sum_probs=240.2
Q ss_pred ceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEE--ecCCCEE
Q 001042 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDRGKV 896 (1178)
Q Consensus 819 ~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~--s~d~~~l 896 (1178)
....+..|.+.|..+.|- ++...|++|+.|..|++|++...+.+...++.|..+.++++ .+++.++
T Consensus 167 ~~~~ld~h~gev~~v~~l------------~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~ 234 (459)
T KOG0288|consen 167 ALFVLDAHEGEVHDVEFL------------RNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHV 234 (459)
T ss_pred hhhhhhccccccceeEEc------------cCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceE
Confidence 455688999999999997 77799999999999999998866666888999999999965 6889999
Q ss_pred EEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCC
Q 001042 897 VSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDS 975 (1178)
Q Consensus 897 ~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~ 975 (1178)
++++.|+.+++|++.+.+...++.+|++.|+++.|. ....+++|+.|.+|+.||+....|.+++. ..+.+..++.+
T Consensus 235 iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~-- 311 (459)
T KOG0288|consen 235 IAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS-- 311 (459)
T ss_pred EeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec--
Confidence 999999999999999999999999999999999998 44459999999999999999988887763 34555666665
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEE--cCCEEEEEeCCCcEEEEEcCCCeeeeEeccC----CCcE
Q 001042 976 TGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM--DRDTVITGSDDWTARMWSISRGTCDAVLACH----AGPV 1049 (1178)
Q Consensus 976 ~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h----~~~I 1049 (1178)
...+++|..|++|++||.++..+......+. .|+++.. ++..+.+++.|.++.+.|+++......+.+. ....
T Consensus 312 ~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDw 390 (459)
T KOG0288|consen 312 ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDW 390 (459)
T ss_pred ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccccccc
Confidence 5568899999999999999999999887665 8888876 5668999999999999999998888777632 2348
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE--ecCCCEEEEEeCCCcEEEEE
Q 001042 1050 QCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFH 1116 (1178)
Q Consensus 1050 ~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~dg~~Lasgs~Dg~I~iwd 1116 (1178)
+.+.|||++.|+++||.||.|+||++.+++.+.+....+....|+++ ++.|..+++++.++.+.+|.
T Consensus 391 trvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 391 TRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 89999999999999999999999999999544444444333357766 68899999999999999993
No 76
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=2.2e-25 Score=252.32 Aligned_cols=277 Identities=24% Similarity=0.446 Sum_probs=237.8
Q ss_pred ceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEE---Ee-cCCC
Q 001042 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA---IN-SDRG 894 (1178)
Q Consensus 819 ~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~---~s-~d~~ 894 (1178)
.-+.+.||...|..+++ -++..++++|.||++++|+-..........+.+|.+.|.. +. .++.
T Consensus 6 ls~~l~gH~~DVr~v~~-------------~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~ 72 (745)
T KOG0301|consen 6 LSHELEGHKSDVRAVAV-------------TDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKG 72 (745)
T ss_pred eEEEeccCccchheeEe-------------cCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCc
Confidence 56789999999999987 4577899999999999999653333333567777776663 33 4666
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeC
Q 001042 895 KVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDD 974 (1178)
Q Consensus 895 ~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp 974 (1178)
.+++|+.|++|.+|...+..+...+++|...|.++.......+++||.|.++++|-. +++...+.+|...|++++.-|
T Consensus 73 ~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~ 150 (745)
T KOG0301|consen 73 RLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLP 150 (745)
T ss_pred ceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecc--hhhhcccCCcchheeeeeecC
Confidence 799999999999999999999999999999999999775555999999999999964 677777999999999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEE-cCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEE
Q 001042 975 STGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM-DRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVE 1053 (1178)
Q Consensus 975 ~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~ 1053 (1178)
++ .+++|+.|.+|++|.- ++.++++.+|.+.|+.+++ +...+++++.||.|+.|++ +|+++.++.+|.+-|.++.
T Consensus 151 e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis 226 (745)
T KOG0301|consen 151 EN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSIS 226 (745)
T ss_pred CC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEE
Confidence 88 7889999999999985 7889999999999999998 5569999999999999998 8999999999999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEEe--cCCCEEEEEeCCCcEEEEEcCC
Q 001042 1054 YSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSIN--AGDHWLGIGAADNSMSLFHRPQ 1119 (1178)
Q Consensus 1054 ~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is--~dg~~Lasgs~Dg~I~iwd~~~ 1119 (1178)
...++..+++++.|+++++|+.. .+.+.+......|++.. ++|+ +++|++||.||||....
T Consensus 227 ~~~~~~~Ivs~gEDrtlriW~~~----e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 227 MALSDGLIVSTGEDRTLRIWKKD----ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred ecCCCCeEEEecCCceEEEeecC----ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 88888999999999999999876 56677766666777774 4555 67788999999998763
No 77
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=1.7e-23 Score=228.62 Aligned_cols=368 Identities=14% Similarity=0.289 Sum_probs=276.6
Q ss_pred CCCCCcccccCCcceEEEEecCCCCccccccc-----c-----eeecccccccCCCCCCCCCCCcCCcccccceEEeccc
Q 001042 757 DDQQPAEASGIGRSWVQSMFSREASSRSHSFS-----R-----VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGH 826 (1178)
Q Consensus 757 ~~~~~~~~~gh~~~i~~~aFSpdg~~las~~~-----d-----I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH 826 (1178)
+...+....||...|.|++.+||.-.+|+|-. . +|+||..+-. .++++...
T Consensus 93 ee~~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~-------------------TL~V~g~f 153 (626)
T KOG2106|consen 93 EERSQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLS-------------------TLHVIGFF 153 (626)
T ss_pred hhhhcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccce-------------------eeeeeccc
Confidence 33345568899999999999999888886521 1 9999987666 68888888
Q ss_pred ccceEEEEeeeccceeccccccCCCCEEEEE--eCCCcEEEEcCCCCCceeeEeecccccceE--EEecCCCEEEEEeCC
Q 001042 827 AGAITALHCVTKREVWDLVGDREDAGFFISG--STDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKVVSGSDD 902 (1178)
Q Consensus 827 ~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasg--s~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~--~~s~d~~~l~sgs~d 902 (1178)
...|+|++||+. ..|.+++.- +.+..+.+||.. ........+..+..|. .|+|.+..++.....
T Consensus 154 ~~GV~~vaFsk~----------~~G~~l~~vD~s~~h~lSVWdWq--k~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk 221 (626)
T KOG2106|consen 154 DRGVTCVAFSKI----------NGGSLLCAVDDSNPHMLSVWDWQ--KKAKLGPVKTSNEVVFLATFHPTDPNLIITCGK 221 (626)
T ss_pred cccceeeeeccc----------CCCceEEEecCCCccccchhhch--hhhccCcceeccceEEEEEeccCCCcEEEEeCC
Confidence 899999999962 345555554 345678999976 2222233333344444 478877766666667
Q ss_pred CcEEEEECCCCcEEEE---ecCC-CCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCE
Q 001042 903 QSVLVWDKQTSQLLEE---LKGH-DAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGI 978 (1178)
Q Consensus 903 g~I~iwd~~t~~~~~~---l~~h-~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~ 978 (1178)
|.+..|+.+.+...++ +..+ ...|.|++|..+.-+++|..+|.|.||+..+.+..+....|++.|.+++.-.+|.+
T Consensus 222 ~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtl 301 (626)
T KOG2106|consen 222 GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTL 301 (626)
T ss_pred ceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccE
Confidence 9999999998866553 3332 36799999998888999999999999999888887777799999999999999986
Q ss_pred EEEEeCCCeEEEEECCCCc-----------eEE-----------------------------EEecCCccEEEEEEc--C
Q 001042 979 LAAGGRDAVANIWDIRAGR-----------QMH-----------------------------KFLGHTKWIRSIRMD--R 1016 (1178)
Q Consensus 979 l~sgs~dg~I~lwD~~~~~-----------~~~-----------------------------~~~~~~~~v~~l~~~--~ 1016 (1178)
+- |+.|..|..||-.-.+ .++ ...+|......++.. .
T Consensus 302 lS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~ 380 (626)
T KOG2106|consen 302 LS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSK 380 (626)
T ss_pred ee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCCh
Confidence 65 9999999999932100 001 112455555666663 4
Q ss_pred CEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE
Q 001042 1017 DTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI 1096 (1178)
Q Consensus 1017 ~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i 1096 (1178)
+.+++++.|+.+++|+ ..+...+.. -..+..|+.|+|.| .++.|+..|...+.|.++.....+++- +..-.+..+
T Consensus 381 ~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~y 455 (626)
T KOG2106|consen 381 NQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRY 455 (626)
T ss_pred hheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEE
Confidence 5899999999999999 444544443 45788999999999 999999999999999998644444433 344445566
Q ss_pred ecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001042 1097 NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEA 1174 (1178)
Q Consensus 1097 s~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv 1174 (1178)
+|+|.++|.|+.|+.|+||.+... |. ...+.-+.|..+|+.+.||+|+++|.+-+.|-.|..|..
T Consensus 456 sp~G~~lAvgs~d~~iyiy~Vs~~--------g~-----~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 456 SPDGAFLAVGSHDNHIYIYRVSAN--------GR-----KYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKP 520 (626)
T ss_pred cCCCCEEEEecCCCeEEEEEECCC--------Cc-----EEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEcc
Confidence 999999999999999999998742 21 233333344589999999999999999999999999943
No 78
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=5.5e-25 Score=222.78 Aligned_cols=275 Identities=16% Similarity=0.262 Sum_probs=238.1
Q ss_pred cccccCCcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeecc
Q 001042 762 AEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKR 839 (1178)
Q Consensus 762 ~~~~gh~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~ 839 (1178)
..+.+|...+-.++|.-||..+|+|+.| +++|+++..... .-...+||.+.|-.++|.|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~-----------------~~~~~~gh~~svdql~w~~-- 74 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFR-----------------KELVYRGHTDSVDQLCWDP-- 74 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhh-----------------hhhcccCCCcchhhheeCC--
Confidence 4567888999999999999999999999 999999976421 1234679999999999986
Q ss_pred ceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceE-EEecCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 001042 840 EVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR-AINSDRGKVVSGSDDQSVLVWDKQTSQLLEE 918 (1178)
Q Consensus 840 ~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~-~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~ 918 (1178)
+....+++++.|.+|++||+. ..+.........+.+. +++|+|+++++++.|..|...|.++.+....
T Consensus 75 ---------~~~d~~atas~dk~ir~wd~r--~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~ 143 (313)
T KOG1407|consen 75 ---------KHPDLFATASGDKTIRIWDIR--SGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNE 143 (313)
T ss_pred ---------CCCcceEEecCCceEEEEEec--cCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeeh
Confidence 778899999999999999987 3444444444444444 7899999999999999999999998887766
Q ss_pred ecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Q 001042 919 LKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGR 997 (1178)
Q Consensus 919 l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~ 997 (1178)
.+ ....+..++|+ +++.++.....|+|.|.....-+++..++.|.....|+.|+|+|+++|+|+.|..+.+||+...-
T Consensus 144 ~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELi 222 (313)
T KOG1407|consen 144 EQ-FKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELI 222 (313)
T ss_pred hc-ccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhh
Confidence 55 44567777887 77788887888999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCccEEEEEE--cCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCC
Q 001042 998 QMHKFLGHTKWIRSIRM--DRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDG 1068 (1178)
Q Consensus 998 ~~~~~~~~~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg 1068 (1178)
+++.+..+.-+|..++| ++++||+||+|..|-|=++++|..+..++ +.++...++|+|...+||-++.|.
T Consensus 223 C~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 223 CERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDK 294 (313)
T ss_pred hheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecCC
Confidence 99999999999999999 67899999999999999999999999887 788999999999999999887653
No 79
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.8e-25 Score=242.16 Aligned_cols=280 Identities=23% Similarity=0.364 Sum_probs=236.3
Q ss_pred cccccCCcceEEEEecCCCCc-ccccccc-eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeecc
Q 001042 762 AEASGIGRSWVQSMFSREASS-RSHSFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKR 839 (1178)
Q Consensus 762 ~~~~gh~~~i~~~aFSpdg~~-las~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~ 839 (1178)
......+..|..+.|||...+ +|++++- +.+++..+.. ..+++.-....|.+++|.
T Consensus 20 ~~~~ke~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~-------------------~~k~~srFk~~v~s~~fR--- 77 (487)
T KOG0310|consen 20 PPVHKEHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRS-------------------VRKTFSRFKDVVYSVDFR--- 77 (487)
T ss_pred cccccccCcceeEecCCCCCCceEEecccEEEEEecchhh-------------------hhhhHHhhccceeEEEee---
Confidence 334566789999999996643 5555555 9999988766 566677788899999997
Q ss_pred ceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEE--Eec-CCCEEEEEeCCCcEEEEECCCCcEE
Q 001042 840 EVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INS-DRGKVVSGSDDQSVLVWDKQTSQLL 916 (1178)
Q Consensus 840 ~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~--~s~-d~~~l~sgs~dg~I~iwd~~t~~~~ 916 (1178)
.||+++|+|+..|.|+|+|.. .......+.+|+.++.. |++ ++..+++|++|+.+++||+.+....
T Consensus 78 ---------~DG~LlaaGD~sG~V~vfD~k--~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~ 146 (487)
T KOG0310|consen 78 ---------SDGRLLAAGDESGHVKVFDMK--SRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQ 146 (487)
T ss_pred ---------cCCeEEEccCCcCcEEEeccc--cHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEE
Confidence 899999999999999999944 55667889999999885 565 4566788999999999999999887
Q ss_pred EEecCCCCceEEEEEe--CCCeEEEEeCCCeEEEEeCCCC-eEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 001042 917 EELKGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTD-TCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDI 993 (1178)
Q Consensus 917 ~~l~~h~~~V~~l~~~--~~~~l~sgs~dg~V~iwd~~~~-~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~ 993 (1178)
..+.+|++.|.|.+|+ ++..+++|+.||+|++||+++. ..+.++ .|..+|..+.+-|.|..+++++. ..+++||+
T Consensus 147 ~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl 224 (487)
T KOG0310|consen 147 AELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAGG-NSVKVWDL 224 (487)
T ss_pred EEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCC-CeEEEEEe
Confidence 7899999999999999 5678999999999999999987 555555 78899999999999999998875 57999999
Q ss_pred CCCceE-EEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcE
Q 001042 994 RAGRQM-HKFLGHTKWIRSIRMD--RDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLL 1070 (1178)
Q Consensus 994 ~~~~~~-~~~~~~~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I 1070 (1178)
.+|... ..+..|...|+|+.+. +..|++|+-||.|++||+.+-+.+..+. ..++|.+++.+|++..++.|..||.+
T Consensus 225 ~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv 303 (487)
T KOG0310|consen 225 TTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLV 303 (487)
T ss_pred cCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEeccccee
Confidence 966554 4455599999999994 4799999999999999998888888887 68899999999999999999999988
Q ss_pred EEEECCC
Q 001042 1071 RFWENDD 1077 (1178)
Q Consensus 1071 ~iwd~~~ 1077 (1178)
.+-+...
T Consensus 304 ~~rr~~~ 310 (487)
T KOG0310|consen 304 SIRRREV 310 (487)
T ss_pred eeehhhc
Confidence 7764433
No 80
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=3.6e-26 Score=240.69 Aligned_cols=282 Identities=19% Similarity=0.339 Sum_probs=237.2
Q ss_pred eeeEeecccccceEEEe--cCC-CEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEeCCCeEEEEeCCCeEEEEe
Q 001042 874 ELRATLKGHTRTVRAIN--SDR-GKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWD 950 (1178)
Q Consensus 874 ~~~~~l~~h~~~V~~~s--~d~-~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd 950 (1178)
..+..+.||...|.|+. |.. ..+++|+.||.|++||+.+.++..++..|.+.|..+++.. ..+++++.|.+|+.|-
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ-TSFFTVGDDKTVKQWK 135 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc-cceEEecCCcceeeee
Confidence 34567789999999984 443 5689999999999999999999999999999999999976 6789999999999999
Q ss_pred CCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEcCC---EEEEEeCCCc
Q 001042 951 VRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD---TVITGSDDWT 1027 (1178)
Q Consensus 951 ~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~---~l~sgs~dg~ 1027 (1178)
+.. ..++++. .++.+..+.-+..+..++++|.+ |.|||..-..++..+.-..+.|.++.+++. .|+++..|+.
T Consensus 136 ~~~-~p~~til-g~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrs 211 (433)
T KOG0268|consen 136 IDG-PPLHTIL-GKSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRS 211 (433)
T ss_pred ccC-Ccceeee-ccccccccccccccccccccCce--eeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCc
Confidence 865 4666663 35667788888788888888764 999999999999999888899999999764 8899999999
Q ss_pred EEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE--ecCCCEEEE
Q 001042 1028 ARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI--NAGDHWLGI 1105 (1178)
Q Consensus 1028 I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~dg~~Las 1105 (1178)
|.+||++.+.+++.+. -...-+.++|+|.+-.+++|+.|..++.+|++.-. ..+....+|.+.|+++ ||.|+-+++
T Consensus 212 IvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~-~p~~v~~dhvsAV~dVdfsptG~Efvs 289 (433)
T KOG0268|consen 212 IVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS-RPLNVHKDHVSAVMDVDFSPTGQEFVS 289 (433)
T ss_pred eEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhc-ccchhhcccceeEEEeccCCCcchhcc
Confidence 9999999999887765 34556889999988889999999999999998764 5677778999999887 899999999
Q ss_pred EeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001042 1106 GAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATI 1176 (1178)
Q Consensus 1106 gs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~t 1176 (1178)
||.|.+|+||....+.-. +...+ .....|.+|.||.|.++++|||+||.|++|....
T Consensus 290 gsyDksIRIf~~~~~~SR------------diYht--kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 290 GSYDKSIRIFPVNHGHSR------------DIYHT--KRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred ccccceEEEeecCCCcch------------hhhhH--hhhheeeEEEEeccccEEEecCCCcceeeeecch
Confidence 999999999999743211 11111 2234699999999999999999999999998753
No 81
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3.6e-25 Score=223.21 Aligned_cols=238 Identities=22% Similarity=0.405 Sum_probs=207.5
Q ss_pred cccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEEe---cCCCEEEEEeCC
Q 001042 826 HAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAIN---SDRGKVVSGSDD 902 (1178)
Q Consensus 826 H~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s---~d~~~l~sgs~d 902 (1178)
-.+.+..++|++ ...+.+++++.||++++||.. .....+..++.|...|.++. .++..+++++.|
T Consensus 59 ~~D~LfdV~Wse-----------~~e~~~~~a~GDGSLrl~d~~-~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD 126 (311)
T KOG0277|consen 59 TEDGLFDVAWSE-----------NHENQVIAASGDGSLRLFDLT-MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWD 126 (311)
T ss_pred cccceeEeeecC-----------CCcceEEEEecCceEEEeccC-CCCcchhHHHhhhhheEEeccccccceeEEeeccC
Confidence 456789999985 557788999999999999976 44557789999999999874 346678889999
Q ss_pred CcEEEEECCCCcEEEEecCCCCceEEEEEe--CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeC-CCCEE
Q 001042 903 QSVLVWDKQTSQLLEELKGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDD-STGIL 979 (1178)
Q Consensus 903 g~I~iwd~~t~~~~~~l~~h~~~V~~l~~~--~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp-~~~~l 979 (1178)
++|++|+...++.+.++.+|...|....|+ ..+.+++++.||++++||++.......+..|...+.++.|+. +.+.+
T Consensus 127 ~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl 206 (311)
T KOG0277|consen 127 GTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVL 206 (311)
T ss_pred CceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEE
Confidence 999999999999999999999999999999 588999999999999999987554455888999999999998 67789
Q ss_pred EEEeCCCeEEEEECCCC-ceEEEEecCCccEEEEEEcCC---EEEEEeCCCcEEEEEcCCC-eeeeEeccCCCcEEEEEE
Q 001042 980 AAGGRDAVANIWDIRAG-RQMHKFLGHTKWIRSIRMDRD---TVITGSDDWTARMWSISRG-TCDAVLACHAGPVQCVEY 1054 (1178)
Q Consensus 980 ~sgs~dg~I~lwD~~~~-~~~~~~~~~~~~v~~l~~~~~---~l~sgs~dg~I~iwd~~~~-~~~~~~~~h~~~I~~l~~ 1054 (1178)
++|+.|+.|+.||+++- .++..+.+|.-.|..+++++. .|++++.|=+++|||...+ ..+.+...|+.-+..+.|
T Consensus 207 ~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dw 286 (311)
T KOG0277|consen 207 ATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDW 286 (311)
T ss_pred EecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEecccc
Confidence 99999999999999975 467888999999999999775 8999999999999998854 456677788999999999
Q ss_pred ec-CCCEEEEEeCCCcEEEEEC
Q 001042 1055 SS-SDRGIITGSSDGLLRFWEN 1075 (1178)
Q Consensus 1055 sp-dg~~L~sgs~Dg~I~iwd~ 1075 (1178)
++ ++.++|+++.|+.++||+-
T Consensus 287 s~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 287 SLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccccCceeeecccccceeeecc
Confidence 87 4678999999999999974
No 82
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.4e-25 Score=251.32 Aligned_cols=269 Identities=23% Similarity=0.398 Sum_probs=235.9
Q ss_pred EecCCCCcccccccc-eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceeccccccCCCCE
Q 001042 775 MFSREASSRSHSFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGF 853 (1178)
Q Consensus 775 aFSpdg~~las~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~ 853 (1178)
.|| ..+.+|+|.+. |.+|+..++. .......+...|+++.|+ ++|.+
T Consensus 184 dWs-s~n~laValg~~vylW~~~s~~-------------------v~~l~~~~~~~vtSv~ws------------~~G~~ 231 (484)
T KOG0305|consen 184 DWS-SANVLAVALGQSVYLWSASSGS-------------------VTELCSFGEELVTSVKWS------------PDGSH 231 (484)
T ss_pred hcc-cCCeEEEEecceEEEEecCCCc-------------------eEEeEecCCCceEEEEEC------------CCCCE
Confidence 688 44577777776 9999999877 333344448999999998 89999
Q ss_pred EEEEeCCCcEEEEcCCCCCceeeEeecc-cccceEEEecCCCEEEEEeCCCcEEEEECCCCcEEEE-ecCCCCceEEEEE
Q 001042 854 FISGSTDCLVKIWDPSLRGSELRATLKG-HTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEE-LKGHDAQVSCVRM 931 (1178)
Q Consensus 854 Lasgs~Dg~I~iWd~~~~~~~~~~~l~~-h~~~V~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~-l~~h~~~V~~l~~ 931 (1178)
||+|..+|.|.|||.. ..+....+.+ |...|-+++.++..+.+|+.|+.|..+|+...+.... +.+|...|..+.|
T Consensus 232 LavG~~~g~v~iwD~~--~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkw 309 (484)
T KOG0305|consen 232 LAVGTSDGTVQIWDVK--EQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKW 309 (484)
T ss_pred EEEeecCCeEEEEehh--hccccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEE
Confidence 9999999999999976 4555677777 9999999999999999999999999999998776655 8899999999999
Q ss_pred e-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeC-CCCEEEEEe--CCCeEEEEECCCCceEEEEecCCc
Q 001042 932 L-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDD-STGILAAGG--RDAVANIWDIRAGRQMHKFLGHTK 1007 (1178)
Q Consensus 932 ~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp-~~~~l~sgs--~dg~I~lwD~~~~~~~~~~~~~~~ 1007 (1178)
+ ++.++++|+.|+.+.|||.....+...+..|...|.+++|+| ....||+|+ .|+.|++||..+++.+... ....
T Consensus 310 s~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v-dtgs 388 (484)
T KOG0305|consen 310 SPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV-DTGS 388 (484)
T ss_pred CCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc-ccCC
Confidence 9 899999999999999999988889999999999999999999 677888876 6999999999999998877 4567
Q ss_pred cEEEEEEcCCE--EEE--EeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 001042 1008 WIRSIRMDRDT--VIT--GSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDG 1078 (1178)
Q Consensus 1008 ~v~~l~~~~~~--l~s--gs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~ 1078 (1178)
.|.++.|.+.+ +++ |..++.|.||+..+.+.+..+.+|...|..++++|||..+++|+.|.++++|++-+.
T Consensus 389 QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 389 QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 89999997653 544 446778999999999999999999999999999999999999999999999998764
No 83
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=7e-26 Score=242.50 Aligned_cols=280 Identities=16% Similarity=0.294 Sum_probs=236.5
Q ss_pred EeecccccceEEE--ecCCCEEEEEeCCCcEEEEECCCCc--EEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeC
Q 001042 877 ATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQ--LLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDV 951 (1178)
Q Consensus 877 ~~l~~h~~~V~~~--s~d~~~l~sgs~dg~I~iwd~~t~~--~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~ 951 (1178)
..+..|.+.+..+ -++...|++|+.|..|++|++..++ .+.++.+..+.|+.+.|. ++.++++++.|+.+++|++
T Consensus 169 ~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnv 248 (459)
T KOG0288|consen 169 FVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNV 248 (459)
T ss_pred hhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeec
Confidence 3455666666654 5677899999999999999998776 677888889999999998 8889999999999999999
Q ss_pred CCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEcCCEEEEEeCCCcEEEE
Q 001042 952 RTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMW 1031 (1178)
Q Consensus 952 ~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~~l~sgs~dg~I~iw 1031 (1178)
...+...++.+|.+.|+++.|......+++|+.|.+|+.||+....+.++. -....+..|...+..+++|..|++|++|
T Consensus 249 d~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~-l~~S~cnDI~~~~~~~~SgH~DkkvRfw 327 (459)
T KOG0288|consen 249 DSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTV-LPGSQCNDIVCSISDVISGHFDKKVRFW 327 (459)
T ss_pred cchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccc-cccccccceEecceeeeecccccceEEE
Confidence 999999999999999999999887777999999999999999998888776 3344566777778889999999999999
Q ss_pred EcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEec----ccCCcEEEEecCCCEEEEEe
Q 001042 1032 SISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVT----IHSSAILSINAGDHWLGIGA 1107 (1178)
Q Consensus 1032 d~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~----~h~~~i~~is~dg~~Lasgs 1107 (1178)
|.++..+......+. .|+++..+++|..+.+++.|.++.+.|+++.+......-. +|.-.-..+||++.|+|+||
T Consensus 328 D~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS 406 (459)
T KOG0288|consen 328 DIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGS 406 (459)
T ss_pred eccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeecc
Confidence 999999999888665 9999999999999999999999999999988544443332 23333456799999999999
Q ss_pred CCCcEEEEEcCCCccccccCCCCCccceeEeeccC--CCcccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001042 1108 ADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQ--KTVAVVRCIASDLERKRICSGGRNGLLRLWE 1173 (1178)
Q Consensus 1108 ~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~--~h~~~V~~lafspdg~~Las~s~Dg~V~IWd 1173 (1178)
.||.|+||++.+++ +...+. +....|++++|+|.|..|++++.++.+.+|.
T Consensus 407 ~dgsv~iW~v~tgK---------------lE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 407 ADGSVYIWSVFTGK---------------LEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred CCCcEEEEEccCce---------------EEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 99999999998553 322222 2233699999999999999999999999993
No 84
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.93 E-value=4.7e-24 Score=245.86 Aligned_cols=360 Identities=15% Similarity=0.237 Sum_probs=289.6
Q ss_pred ccccCCcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccc
Q 001042 763 EASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKRE 840 (1178)
Q Consensus 763 ~~~gh~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~ 840 (1178)
...++...|+++.=||-=..+|.|..+ |.+.++..++ .+..++.-.++|++++|.
T Consensus 197 ~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dk-------------------il~sFk~d~g~VtslSFr---- 253 (910)
T KOG1539|consen 197 TFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDK-------------------ILMSFKQDWGRVTSLSFR---- 253 (910)
T ss_pred EecccccceeEeccCCcceEEEEeccCceEEEEEcccCc-------------------EEEEEEccccceeEEEec----
Confidence 345666778888888888889999888 9999999887 788888667999999997
Q ss_pred eeccccccCCCC-EEEEEeCCCcEEEEcCCCCCceeeEeecccccceEE--EecCCCEEEEEeCCCcEEEEECCCC----
Q 001042 841 VWDLVGDREDAG-FFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTS---- 913 (1178)
Q Consensus 841 ~~~~~~~s~d~~-~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~--~s~d~~~l~sgs~dg~I~iwd~~t~---- 913 (1178)
.||+ .+|+|+..|.+-+||++ ...........|.+.+.. +-+....+++++.|+.+++|=.+++
T Consensus 254 --------tDG~p~las~~~~G~m~~wDLe-~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~p 324 (910)
T KOG1539|consen 254 --------TDGNPLLASGRSNGDMAFWDLE-KKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVP 324 (910)
T ss_pred --------cCCCeeEEeccCCceEEEEEcC-CCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcc
Confidence 5665 66788888999999987 333333445578777774 4677889999999999999966644
Q ss_pred cEEEEecCCCCceEEEEEe--CCCeEEEEeCCCeEEEEeCC---------------------------------------
Q 001042 914 QLLEELKGHDAQVSCVRML--SGERVLTASHDGTVKMWDVR--------------------------------------- 952 (1178)
Q Consensus 914 ~~~~~l~~h~~~V~~l~~~--~~~~l~sgs~dg~V~iwd~~--------------------------------------- 952 (1178)
+.++.-.||..+..|+.|. .+..+.+++.|++.+.+++.
T Consensus 325 R~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~ 404 (910)
T KOG1539|consen 325 RLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFE 404 (910)
T ss_pred hheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecc
Confidence 4456667899999999987 67778888888877666531
Q ss_pred --------------------------CCeE-EEEe-----cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEE
Q 001042 953 --------------------------TDTC-VATV-----GRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMH 1000 (1178)
Q Consensus 953 --------------------------~~~~-~~~~-----~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~ 1000 (1178)
+... ...+ +.....+++++.++.|++.+.|+..|.|-+|++.+|-...
T Consensus 405 ~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~ 484 (910)
T KOG1539|consen 405 NAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRK 484 (910)
T ss_pred cchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeec
Confidence 1100 0000 0112467899999999999999999999999999998888
Q ss_pred EE---ecCCccEEEEEEcCC--EEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 001042 1001 KF---LGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWEN 1075 (1178)
Q Consensus 1001 ~~---~~~~~~v~~l~~~~~--~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~ 1075 (1178)
.+ ..|.+.|+.++.|+. .+++++.+|.+.+||..++..+..+. -...++++.++.....++.+..|-.|+++|+
T Consensus 485 sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~ 563 (910)
T KOG1539|consen 485 SFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDV 563 (910)
T ss_pred ccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEc
Confidence 88 589999999999764 79999999999999999988777776 3567889999988889999999999999999
Q ss_pred CCCceEEEEEecccCCcEEEE--ecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEE
Q 001042 1076 DDGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIAS 1153 (1178)
Q Consensus 1076 ~~~~~~~~~~~~~h~~~i~~i--s~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~laf 1153 (1178)
.+. +.++.+.+|.+.|+++ ||||++|++++.|++|++||+.++ ..+... .-..+.+++.|
T Consensus 564 ~t~--kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~---------~lID~~-------~vd~~~~sls~ 625 (910)
T KOG1539|consen 564 VTR--KVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTG---------TLIDGL-------LVDSPCTSLSF 625 (910)
T ss_pred hhh--hhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCc---------ceeeeE-------ecCCcceeeEE
Confidence 987 7788899999999776 899999999999999999999854 222111 23567899999
Q ss_pred cCCCCEEEEEeCC-CcEEEEE
Q 001042 1154 DLERKRICSGGRN-GLLRLWE 1173 (1178)
Q Consensus 1154 spdg~~Las~s~D-g~V~IWd 1173 (1178)
||+|.+|||+..| .-|.+|.
T Consensus 626 SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 626 SPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred CCCCCEEEEEEecCceEEEEE
Confidence 9999999999988 6799995
No 85
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=4.4e-26 Score=240.05 Aligned_cols=282 Identities=19% Similarity=0.323 Sum_probs=231.9
Q ss_pred ceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEE
Q 001042 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVS 898 (1178)
Q Consensus 819 ~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~s 898 (1178)
-+..|.||.+.|.|++=+| ..-..++||+.||.|+|||+. ..++..++..|.+.|..+.-+...+++
T Consensus 58 Fv~~L~gHrdGV~~lakhp-----------~~ls~~aSGs~DG~VkiWnls--qR~~~~~f~AH~G~V~Gi~v~~~~~~t 124 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHP-----------NKLSTVASGSCDGEVKIWNLS--QRECIRTFKAHEGLVRGICVTQTSFFT 124 (433)
T ss_pred chhhccccccccchhhcCc-----------chhhhhhccccCceEEEEehh--hhhhhheeecccCceeeEEecccceEE
Confidence 5667899999999999874 233789999999999999976 677789999999999998877799999
Q ss_pred EeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCC-C
Q 001042 899 GSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDS-T 976 (1178)
Q Consensus 899 gs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~-~ 976 (1178)
++.|.+|+.|.++. ..+.++.+ ...+..+..+ .++.++|||.+ |.|||.....++..+.-..+.|.++.|+|. .
T Consensus 125 vgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~svkfNpvET 200 (433)
T KOG0268|consen 125 VGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISSVKFNPVET 200 (433)
T ss_pred ecCCcceeeeeccC-Ccceeeec-cccccccccccccccccccCce--eeecccccCCccceeecCCCceeEEecCCCcc
Confidence 99999999999874 45566553 4456666665 56778888764 899999999999999888889999999994 5
Q ss_pred CEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEcCC--EEEEEeCCCcEEEEEcCCC-eeeeEeccCCCcEEEEE
Q 001042 977 GILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRG-TCDAVLACHAGPVQCVE 1053 (1178)
Q Consensus 977 ~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~--~l~sgs~dg~I~iwd~~~~-~~~~~~~~h~~~I~~l~ 1053 (1178)
..|++++.|+.|.+||++++.+++... ....-+.|+|+|+ .+++|++|..++.+|++.- .++....+|.+.|.+++
T Consensus 201 sILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVd 279 (433)
T KOG0268|consen 201 SILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVD 279 (433)
T ss_pred hheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEec
Confidence 567778899999999999999887762 3345567899876 7889999999999999874 66778889999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE--ecCCCEEEEEeCCCcEEEEEcCC
Q 001042 1054 YSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQ 1119 (1178)
Q Consensus 1054 ~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~dg~~Lasgs~Dg~I~iwd~~~ 1119 (1178)
|||.|+-+++||.|.+|+||.++.+...-+.-. .....|.++ |.|.+++++||+|+.|++|....
T Consensus 280 fsptG~EfvsgsyDksIRIf~~~~~~SRdiYht-kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 280 FSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT-KRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred cCCCcchhccccccceEEEeecCCCcchhhhhH-hhhheeeEEEEeccccEEEecCCCcceeeeecch
Confidence 999999999999999999999988732211110 112334555 89999999999999999998753
No 86
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.1e-24 Score=219.80 Aligned_cols=259 Identities=17% Similarity=0.321 Sum_probs=218.6
Q ss_pred CCCcEEEEECCCCcEEEEec--CCCCceEEEEEe--CCCeEEEEeCCCeEEEEeCCC-CeEEEEecCCCCCEEEEEEeC-
Q 001042 901 DDQSVLVWDKQTSQLLEELK--GHDAQVSCVRML--SGERVLTASHDGTVKMWDVRT-DTCVATVGRCSSAVLCMEYDD- 974 (1178)
Q Consensus 901 ~dg~I~iwd~~t~~~~~~l~--~h~~~V~~l~~~--~~~~l~sgs~dg~V~iwd~~~-~~~~~~~~~~~~~I~~l~~sp- 974 (1178)
..|++.|.++..++-+.... .-.+.+..++|+ ..+.+++++.||++++||... ..++..++.|...|.++.|++
T Consensus 36 G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~ 115 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTV 115 (311)
T ss_pred cCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccc
Confidence 35788888886544444332 246778999999 577899999999999999643 357888899999999999998
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEc---CCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEE
Q 001042 975 STGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMD---RDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQC 1051 (1178)
Q Consensus 975 ~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~ 1051 (1178)
.++.+++++-||+|++||...++.+.++.+|...|...+|+ ++.++++|.||++++||++..-....+..|...|.+
T Consensus 116 ~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~ 195 (311)
T KOG0277|consen 116 RRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILC 195 (311)
T ss_pred cceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEe
Confidence 56678888999999999999999999999999999999995 569999999999999999875554558889999999
Q ss_pred EEEecC-CCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE--ec-CCCEEEEEeCCCcEEEEEcCCCccccccC
Q 001042 1052 VEYSSS-DRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI--NA-GDHWLGIGAADNSMSLFHRPQERLGGFSG 1127 (1178)
Q Consensus 1052 l~~spd-g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~-dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~ 1127 (1178)
+.|+.- .+.++||+.|+.|+.||+++-+ ..+..+.+|.-.|..+ || ....||+++.|-+++|||...+.
T Consensus 196 cdw~ky~~~vl~Tg~vd~~vr~wDir~~r-~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d------ 268 (311)
T KOG0277|consen 196 CDWSKYNHNVLATGGVDNLVRGWDIRNLR-TPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD------ 268 (311)
T ss_pred ecccccCCcEEEecCCCceEEEEehhhcc-ccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch------
Confidence 999874 5678999999999999999765 6678889999999887 54 35689999999999999987431
Q ss_pred CCCCccceeEeeccCCCcccEEEEEEcC-CCCEEEEEeCCCcEEEEEC
Q 001042 1128 TGSKMSGWQLYRTPQKTVAVVRCIASDL-ERKRICSGGRNGLLRLWEA 1174 (1178)
Q Consensus 1128 ~g~~~~~~~~~~~~~~h~~~V~~lafsp-dg~~Las~s~Dg~V~IWdv 1174 (1178)
.++.+...|+.-|..+.||+ ++.++|+++.|+.++||+.
T Consensus 269 --------s~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 269 --------SAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred --------hhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 34556678999999999997 7889999999999999984
No 87
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=4.8e-23 Score=215.51 Aligned_cols=280 Identities=11% Similarity=0.194 Sum_probs=229.0
Q ss_pred EeecccccceEE--EecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeC--CCeEEEEeC
Q 001042 877 ATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASH--DGTVKMWDV 951 (1178)
Q Consensus 877 ~~l~~h~~~V~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~--dg~V~iwd~ 951 (1178)
+.+..-...|.+ ++.+|..+++++.|.++++||..+++.++++..+.-.+..++|. ..+.++.++. |.+|+..++
T Consensus 8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl 87 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSL 87 (311)
T ss_pred cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEe
Confidence 344444556665 58999999999999999999999999999999888899999998 5666666665 899999999
Q ss_pred CCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEcCCEEEEEeCCCcEEEE
Q 001042 952 RTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMW 1031 (1178)
Q Consensus 952 ~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~~l~sgs~dg~I~iw 1031 (1178)
.+.+.++.+.+|...|.+++.+|-+..+++++.|++|++||++..++...+.....++.+....|-.+|++.....|++|
T Consensus 88 ~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLy 167 (311)
T KOG1446|consen 88 HDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLY 167 (311)
T ss_pred ecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEE
Confidence 99999999999999999999999999999999999999999999888888766666666655566688888888899999
Q ss_pred EcCCC--eeeeEec---cCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcE-----EEEecCCC
Q 001042 1032 SISRG--TCDAVLA---CHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAI-----LSINAGDH 1101 (1178)
Q Consensus 1032 d~~~~--~~~~~~~---~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i-----~~is~dg~ 1101 (1178)
|++.- .+-.++. +.....+.+.|||||++++.++..+.+.+.|.-+|. ...++.++...- .+++||++
T Consensus 168 D~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~--~~~tfs~~~~~~~~~~~a~ftPds~ 245 (311)
T KOG1446|consen 168 DLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGT--VKSTFSGYPNAGNLPLSATFTPDSK 245 (311)
T ss_pred EecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCc--EeeeEeeccCCCCcceeEEECCCCc
Confidence 99863 3333433 335678999999999999999999999999999994 555555544332 44589999
Q ss_pred EEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCC-CcccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001042 1102 WLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQK-TVAVVRCIASDLERKRICSGGRNGLLRLWEAT 1175 (1178)
Q Consensus 1102 ~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~-h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~ 1175 (1178)
++.+|+.||+|.+|+++ +|.. +..+.+ +.+.+.++.|+|.-.+++|+ +..+-+|=.+
T Consensus 246 Fvl~gs~dg~i~vw~~~---------tg~~------v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~ 303 (311)
T KOG1446|consen 246 FVLSGSDDGTIHVWNLE---------TGKK------VAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPD 303 (311)
T ss_pred EEEEecCCCcEEEEEcC---------CCcE------eeEecCCCCCCccccccCCceeeeeec--CceEEEEecc
Confidence 99999999999999997 4433 333334 78889999999998888877 4567778544
No 88
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=4.7e-24 Score=254.42 Aligned_cols=292 Identities=19% Similarity=0.311 Sum_probs=242.0
Q ss_pred CcceEEEEecCCCCcccccc--cc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceec
Q 001042 768 GRSWVQSMFSREASSRSHSF--SR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWD 843 (1178)
Q Consensus 768 ~~~i~~~aFSpdg~~las~~--~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~ 843 (1178)
...|..+..+|||..+|+|+ .| ++||+.+.-.... .......+..+.....|.+.|+|+.|+
T Consensus 13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~-------~~~~~~l~k~l~~m~~h~~sv~CVR~S------- 78 (942)
T KOG0973|consen 13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEK-------EEKNENLPKHLCTMDDHDGSVNCVRFS------- 78 (942)
T ss_pred CeeEEEEEecCCceeEecCCccccccceeeccccccchh-------hhhhcccchhheeeccccCceeEEEEC-------
Confidence 44567779999999999999 66 8899987422100 001111345778889999999999998
Q ss_pred cccccCCCCEEEEEeCCCcEEEEcCCC----------------CCceeeEeecccccceEE--EecCCCEEEEEeCCCcE
Q 001042 844 LVGDREDAGFFISGSTDCLVKIWDPSL----------------RGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSV 905 (1178)
Q Consensus 844 ~~~~s~d~~~Lasgs~Dg~I~iWd~~~----------------~~~~~~~~l~~h~~~V~~--~s~d~~~l~sgs~dg~I 905 (1178)
+||++||+||+|+.|.||+... ...+....+.+|...|.. ++|++.++++++.|++|
T Consensus 79 -----~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsV 153 (942)
T KOG0973|consen 79 -----PDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSV 153 (942)
T ss_pred -----CCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceE
Confidence 9999999999999999998651 012356788999999985 58999999999999999
Q ss_pred EEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCC------CCCEEEEEEeCCCCE
Q 001042 906 LVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRC------SSAVLCMEYDDSTGI 978 (1178)
Q Consensus 906 ~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~------~~~I~~l~~sp~~~~ 978 (1178)
.|||..+.+.+..+.+|.+.|..+.|. -|.++++-+.|++|++|++.+-...+.+..+ ...+..+.|||||.+
T Consensus 154 iiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~ 233 (942)
T KOG0973|consen 154 IIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHH 233 (942)
T ss_pred EEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCe
Confidence 999999999999999999999999999 5999999999999999998776666666543 345789999999999
Q ss_pred EEEEe----CCCeEEEEECCCCceEEEEecCCccEEEEEEcC---------------C----EEEEEeCCCcEEEEEcCC
Q 001042 979 LAAGG----RDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR---------------D----TVITGSDDWTARMWSISR 1035 (1178)
Q Consensus 979 l~sgs----~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~---------------~----~l~sgs~dg~I~iwd~~~ 1035 (1178)
|++.. .-..+.|.+-.+.+.-..+.+|.+++.++.|++ + .+|+|+.|++|.||....
T Consensus 234 las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~ 313 (942)
T KOG0973|consen 234 LASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL 313 (942)
T ss_pred ecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC
Confidence 99874 234688988888888889999999999999943 1 588999999999999877
Q ss_pred CeeeeEec-cCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 001042 1036 GTCDAVLA-CHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDG 1078 (1178)
Q Consensus 1036 ~~~~~~~~-~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~ 1078 (1178)
.+++.... -....|..++|+|||..|.++|.||+|.+...+..
T Consensus 314 ~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 314 PRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred CCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 77765543 23568999999999999999999999999988753
No 89
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.93 E-value=2.8e-24 Score=221.66 Aligned_cols=305 Identities=17% Similarity=0.285 Sum_probs=235.7
Q ss_pred ceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEE
Q 001042 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVS 898 (1178)
Q Consensus 819 ~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~s 898 (1178)
....+..|.+++.+-+|+ +||.++|+||.|..|+|.|++ ..+.+. .+. .+..
T Consensus 104 Et~ylt~HK~~cR~aafs------------~DG~lvATGsaD~SIKildve---rmlaks--~~~-----------em~~ 155 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFS------------PDGSLVATGSADASIKILDVE---RMLAKS--KPK-----------EMIS 155 (430)
T ss_pred ceEEEeecccceeeeeeC------------CCCcEEEccCCcceEEEeehh---hhhhhc--chh-----------hhcc
Confidence 456688899999999998 999999999999999999976 111110 011 1111
Q ss_pred EeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEec--CCCCCEEEEEEeCC
Q 001042 899 GSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVG--RCSSAVLCMEYDDS 975 (1178)
Q Consensus 899 gs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~--~~~~~I~~l~~sp~ 975 (1178)
+..+. ..-.++++..|...|+++.|+ ....+++|+.|++|+++|.......+.++ .....|.++.|+|.
T Consensus 156 ~~~qa--------~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPs 227 (430)
T KOG0640|consen 156 GDTQA--------RHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPS 227 (430)
T ss_pred CCccc--------CCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCC
Confidence 11111 124577889999999999999 56788899999999999997543322221 34568999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEE---ecCCccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCeeeeEec-cCC-Cc
Q 001042 976 TGILAAGGRDAVANIWDIRAGRQMHKF---LGHTKWIRSIRMD--RDTVITGSDDWTARMWSISRGTCDAVLA-CHA-GP 1048 (1178)
Q Consensus 976 ~~~l~sgs~dg~I~lwD~~~~~~~~~~---~~~~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~-~h~-~~ 1048 (1178)
|.++++|+....+++||+.+.++...- .+|.+.|+++.++ ++..++|+.||.|++||--+++|+.++. .|. ..
T Consensus 228 GefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gse 307 (430)
T KOG0640|consen 228 GEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSE 307 (430)
T ss_pred CceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCce
Confidence 999999999999999999998876543 4688899999995 5689999999999999999999998886 454 46
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEeccc--CCcE-----EEEecCCCEEEEEe-CCCcEEEEEcCCC
Q 001042 1049 VQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIH--SSAI-----LSINAGDHWLGIGA-ADNSMSLFHRPQE 1120 (1178)
Q Consensus 1049 I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h--~~~i-----~~is~dg~~Lasgs-~Dg~I~iwd~~~~ 1120 (1178)
|.+..|..+|+++++.|.|..+++|.+.++ +++..+.|. ++.. ..++....++..-. ..+.+.-||..+
T Consensus 308 vcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~--R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRt- 384 (430)
T KOG0640|consen 308 VCSAVFTKNGKYILSSGKDSTVKLWEISTG--RMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDART- 384 (430)
T ss_pred eeeEEEccCCeEEeecCCcceeeeeeecCC--ceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccc-
Confidence 999999999999999999999999999999 666666543 2221 12244555655543 347789999873
Q ss_pred ccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001042 1121 RLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEAT 1175 (1178)
Q Consensus 1121 ~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~ 1175 (1178)
+.+...| ..+|.+.++.+.-||.+.-+.+||.|-.+|+|--.
T Consensus 385 --------adr~~l~-----slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 385 --------ADRVALL-----SLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred --------hhhhhhc-----ccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 3333222 45899999999999999999999999999999643
No 90
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=7.3e-25 Score=246.24 Aligned_cols=320 Identities=16% Similarity=0.273 Sum_probs=255.8
Q ss_pred CCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceeccccccCCCCEEE
Q 001042 778 REASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFI 855 (1178)
Q Consensus 778 pdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~La 855 (1178)
|.|++|.+||.| |++|++...... .....+..++.|+..|+.++.. .+++.|+
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~-------------~s~~~~asme~HsDWVNDiiL~------------~~~~tlI 89 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNE-------------PSTPYIASMEHHSDWVNDIILC------------GNGKTLI 89 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCC-------------cccchhhhhhhhHhHHhhHHhh------------cCCCceE
Confidence 456789999999 999998854311 1111577899999999999887 7899999
Q ss_pred EEeCCCcEEEEcCCCCCceeeEeecccccceEEEe---cCCCEEEEEeCCCcEEEEECCCCc--EEE--------Eec-C
Q 001042 856 SGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAIN---SDRGKVVSGSDDQSVLVWDKQTSQ--LLE--------ELK-G 921 (1178)
Q Consensus 856 sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s---~d~~~l~sgs~dg~I~iwd~~t~~--~~~--------~l~-~ 921 (1178)
|+|.|-+|++|+....+.-+..++..|...|.|++ ++...+|+||-|+.|.+||++++. .+. .+. |
T Consensus 90 S~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG 169 (735)
T KOG0308|consen 90 SASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSG 169 (735)
T ss_pred EecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCC
Confidence 99999999999988555466788999999999874 578889999999999999999872 222 223 7
Q ss_pred CCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEE
Q 001042 922 HDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMH 1000 (1178)
Q Consensus 922 h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~ 1000 (1178)
+...|.+++.+ .+..+++|+..+.+++||.++++.+..+.+|...|.++..++||+.+++++.||+|++||+...+++.
T Consensus 170 ~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~ 249 (735)
T KOG0308|consen 170 PKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLA 249 (735)
T ss_pred CccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceee
Confidence 88899999988 57789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCccEEEEEEcCC--EEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 001042 1001 KFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDG 1078 (1178)
Q Consensus 1001 ~~~~~~~~v~~l~~~~~--~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~ 1078 (1178)
++..|...|+++..+++ .+.+|+.||.|..=|+++......+-....+|..+..+...+-+.+++.|+.|+-|...-.
T Consensus 250 T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~ 329 (735)
T KOG0308|consen 250 TYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPD 329 (735)
T ss_pred eEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCccc
Confidence 99999999999999876 8999999999999999985433333335667888887766666788889999999975421
Q ss_pred ce-----EEEEEe---cccCCc--------------E--EEEecCCCEEEEEeCCCcEEEEEcCCCcc
Q 001042 1079 GI-----KCVKNV---TIHSSA--------------I--LSINAGDHWLGIGAADNSMSLFHRPQERL 1122 (1178)
Q Consensus 1079 ~~-----~~~~~~---~~h~~~--------------i--~~is~dg~~Lasgs~Dg~I~iwd~~~~~~ 1122 (1178)
.. .+.... ..|... + .++-.|.+.+++-...|.+.+||+-....
T Consensus 330 ~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~ 397 (735)
T KOG0308|consen 330 IALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVK 397 (735)
T ss_pred cccccCCCCCcccccCCCccccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEEeeeeee
Confidence 00 000000 001100 0 11224678999999999999999875443
No 91
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.2e-24 Score=251.52 Aligned_cols=244 Identities=20% Similarity=0.366 Sum_probs=205.1
Q ss_pred eEEec-ccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCC----------------------------
Q 001042 820 IRIIR-GHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSL---------------------------- 870 (1178)
Q Consensus 820 ~~~l~-gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~---------------------------- 870 (1178)
.+.+. +|.++|+++.|| +||+|||+||.||.|+||.+..
T Consensus 259 ~Qe~~~ah~gaIw~mKFS------------~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~ 326 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFS------------HDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPST 326 (712)
T ss_pred eeccccccCCcEEEEEeC------------CCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccc
Confidence 34455 899999999998 9999999999999999998642
Q ss_pred ----C--------------------------CceeeEeecccccceEEEec-CCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 001042 871 ----R--------------------------GSELRATLKGHTRTVRAINS-DRGKVVSGSDDQSVLVWDKQTSQLLEEL 919 (1178)
Q Consensus 871 ----~--------------------------~~~~~~~l~~h~~~V~~~s~-d~~~l~sgs~dg~I~iwd~~t~~~~~~l 919 (1178)
. ..+....+.||.+.|..+++ .+++|++++.|.+|++|++...++++.|
T Consensus 327 s~~~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F 406 (712)
T KOG0283|consen 327 SSEEKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVF 406 (712)
T ss_pred cccccccccccccccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEE
Confidence 0 00123455789999998864 4678999999999999999999999998
Q ss_pred cCCCCceEEEEEe--CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Q 001042 920 KGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGR 997 (1178)
Q Consensus 920 ~~h~~~V~~l~~~--~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~ 997 (1178)
. |.+.|+|++|+ |++++++|+-||.|++|++...+.+... ....-|++++|.|||+..++|+.+|.+++|++...+
T Consensus 407 ~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~-Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk 484 (712)
T KOG0283|consen 407 S-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWN-DLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLK 484 (712)
T ss_pred e-cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeeh-hhhhhheeEEeccCCceEEEEEeccEEEEEEccCCe
Confidence 7 99999999999 7999999999999999999877766544 445889999999999999999999999999998877
Q ss_pred eEEEEec--------CCccEEEEEE---cCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCC--cEEEEEEecCCCEEEEE
Q 001042 998 QMHKFLG--------HTKWIRSIRM---DRDTVITGSDDWTARMWSISRGTCDAVLACHAG--PVQCVEYSSSDRGIITG 1064 (1178)
Q Consensus 998 ~~~~~~~--------~~~~v~~l~~---~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~--~I~~l~~spdg~~L~sg 1064 (1178)
......- ....|+.+.+ +++.+++.+.|..|||+|.++...+..++++.. .-....|+.||++|+++
T Consensus 485 ~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~ 564 (712)
T KOG0283|consen 485 LVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSA 564 (712)
T ss_pred EEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEe
Confidence 6554321 1227999998 445799999999999999998888888887543 33567889999999999
Q ss_pred eCCCcEEEEECCC
Q 001042 1065 SSDGLLRFWENDD 1077 (1178)
Q Consensus 1065 s~Dg~I~iwd~~~ 1077 (1178)
+.|..|++|+...
T Consensus 565 seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 565 SEDSWVYIWKNDS 577 (712)
T ss_pred ecCceEEEEeCCC
Confidence 9999999999854
No 92
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=3.9e-24 Score=232.44 Aligned_cols=287 Identities=22% Similarity=0.350 Sum_probs=229.1
Q ss_pred CcccccCCcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeec
Q 001042 761 PAEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTK 838 (1178)
Q Consensus 761 ~~~~~gh~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~ 838 (1178)
-.....|+.+++++++|||+++..+++.+ |.-|++.++.......+.......+-....... ++|...|.+++.|
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r-~~h~keil~~avS-- 211 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR-KGHVKEILTLAVS-- 211 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccc-ccccceeEEEEEc--
Confidence 44567899999999999999999999999 999999998854222222111111111111222 5999999999998
Q ss_pred cceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEE--ecCCCEEEEEeCCCcEEEEECCCCcEE
Q 001042 839 REVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQLL 916 (1178)
Q Consensus 839 ~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~--s~d~~~l~sgs~dg~I~iwd~~t~~~~ 916 (1178)
+||++||+|+.|..|.||+.+ +.+.++.+.+|.+.|.++ -...+.+++++.|++|++|+++....+
T Consensus 212 ----------~Dgkylatgg~d~~v~Iw~~~--t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~v 279 (479)
T KOG0299|consen 212 ----------SDGKYLATGGRDRHVQIWDCD--TLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYV 279 (479)
T ss_pred ----------CCCcEEEecCCCceEEEecCc--ccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHH
Confidence 999999999999999999976 677778899999999965 566678999999999999999999999
Q ss_pred EEecCCCCceEEEEEeCCCeEE-EEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Q 001042 917 EELKGHDAQVSCVRMLSGERVL-TASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRA 995 (1178)
Q Consensus 917 ~~l~~h~~~V~~l~~~~~~~l~-sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~ 995 (1178)
.++.+|.+.|.++...+-..++ +|+.|+++++|++.. +....+.++.+.+-|++|-.+ ..+++|+.+|.|.+|++.+
T Consensus 280 etlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~K 357 (479)
T KOG0299|consen 280 ETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLK 357 (479)
T ss_pred HHHhCCccceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecc
Confidence 9999999999999988655555 455999999999944 334455678889999999865 4588999999999999999
Q ss_pred CceEEEEec-C-----------CccEEEEEE--cCCEEEEEeCCCcEEEEEcCCC----eeeeEeccCCCcEEEEEEecC
Q 001042 996 GRQMHKFLG-H-----------TKWIRSIRM--DRDTVITGSDDWTARMWSISRG----TCDAVLACHAGPVQCVEYSSS 1057 (1178)
Q Consensus 996 ~~~~~~~~~-~-----------~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~----~~~~~~~~h~~~I~~l~~spd 1057 (1178)
.+++.+... | ..+|++++. ..+++++|+.+|.|++|-+..+ +++..+. -.+.|++++|+++
T Consensus 358 Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~s 436 (479)
T KOG0299|consen 358 KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNS 436 (479)
T ss_pred cCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccC
Confidence 988776531 1 228888887 4569999999999999999887 3444444 5788999999999
Q ss_pred CCEEEEEe
Q 001042 1058 DRGIITGS 1065 (1178)
Q Consensus 1058 g~~L~sgs 1065 (1178)
|+.+++|.
T Consensus 437 gk~ivagi 444 (479)
T KOG0299|consen 437 GKRIVAGI 444 (479)
T ss_pred CCEEEEec
Confidence 99776663
No 93
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=3.8e-24 Score=240.99 Aligned_cols=329 Identities=19% Similarity=0.266 Sum_probs=257.8
Q ss_pred ceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceec--cc
Q 001042 770 SWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWD--LV 845 (1178)
Q Consensus 770 ~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~--~~ 845 (1178)
.-+++.|++....+.+.-.| +.|||++.-...+ ....+-.|+..|+++.-.|- ++-+ ..
T Consensus 326 D~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvg----------------k~~s~lyHS~ciW~Ve~~p~-nv~~~~~a 388 (1080)
T KOG1408|consen 326 DAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVG----------------KCSSMLYHSACIWDVENLPC-NVHSPTAA 388 (1080)
T ss_pred ceeEEEecCCCceEEEEEcCceEEEEecccccccc----------------ceeeeeeccceeeeeccccc-cccCcccc
Confidence 45778999998888777777 9999999655433 45566779999999887652 1111 11
Q ss_pred cccCCCCEEEEEeCCCcEEEEcCCCCC--ceeeE-ee--------------------------------cccccceE--E
Q 001042 846 GDREDAGFFISGSTDCLVKIWDPSLRG--SELRA-TL--------------------------------KGHTRTVR--A 888 (1178)
Q Consensus 846 ~~s~d~~~Lasgs~Dg~I~iWd~~~~~--~~~~~-~l--------------------------------~~h~~~V~--~ 888 (1178)
+. |. ..++|++.||+||+||+.... ....+ .+ -+....+. +
T Consensus 389 cl-p~-~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~ 466 (1080)
T KOG1408|consen 389 CL-PR-GCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALA 466 (1080)
T ss_pred cC-Cc-cceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEE
Confidence 11 22 348899999999999986311 11000 00 01112233 5
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEeC----CCeEEEEeCCCeEEEEeCCCC-eEEEEecCC
Q 001042 889 INSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLS----GERVLTASHDGTVKMWDVRTD-TCVATVGRC 963 (1178)
Q Consensus 889 ~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~~----~~~l~sgs~dg~V~iwd~~~~-~~~~~~~~~ 963 (1178)
++|+|++||+|..-|+++||++.+-+....+..|...|.|+.|+. ..+|++++.|..|.++|+... ..++++.+|
T Consensus 467 vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~H 546 (1080)
T KOG1408|consen 467 VSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGH 546 (1080)
T ss_pred ECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhccc
Confidence 699999999999999999999999998889999999999999982 567999999999999999654 567889999
Q ss_pred CCCEEEEEEeCCC--CEEEEEeCCCeEEEEECCCCceEEEEec-----CCccEEEEEEcCC--EEEEEeCCCcEEEEEcC
Q 001042 964 SSAVLCMEYDDST--GILAAGGRDAVANIWDIRAGRQMHKFLG-----HTKWIRSIRMDRD--TVITGSDDWTARMWSIS 1034 (1178)
Q Consensus 964 ~~~I~~l~~sp~~--~~l~sgs~dg~I~lwD~~~~~~~~~~~~-----~~~~v~~l~~~~~--~l~sgs~dg~I~iwd~~ 1034 (1178)
...|+++.|.-.| ..+++++.|..|.+--.+.......+.. ....+..++.+++ ++++++.|..|+|||+.
T Consensus 547 SssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~ 626 (1080)
T KOG1408|consen 547 SSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIE 626 (1080)
T ss_pred ccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecc
Confidence 9999999998877 6788888998775533322111122211 2346778888765 89999999999999999
Q ss_pred CCeeeeEecc---CCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE--ecCCCEEEEEeCC
Q 001042 1035 RGTCDAVLAC---HAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAAD 1109 (1178)
Q Consensus 1035 ~~~~~~~~~~---h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~dg~~Lasgs~D 1109 (1178)
+|+..+.+++ |.+....+..+|.|.|+++.+.|.++.++|..+| +|+....||...|+.+ .+|.+.|++.+.|
T Consensus 627 sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg--EcvA~m~GHsE~VTG~kF~nDCkHlISvsgD 704 (1080)
T KOG1408|consen 627 SGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG--ECVAQMTGHSEAVTGVKFLNDCKHLISVSGD 704 (1080)
T ss_pred ccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc--hhhhhhcCcchheeeeeecccchhheeecCC
Confidence 9999999985 6677889999999999999999999999999999 8999999999999877 7899999999999
Q ss_pred CcEEEEEcCC
Q 001042 1110 NSMSLFHRPQ 1119 (1178)
Q Consensus 1110 g~I~iwd~~~ 1119 (1178)
|.|.||.++.
T Consensus 705 gCIFvW~lp~ 714 (1080)
T KOG1408|consen 705 GCIFVWKLPL 714 (1080)
T ss_pred ceEEEEECch
Confidence 9999999864
No 94
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=4.6e-24 Score=241.70 Aligned_cols=278 Identities=23% Similarity=0.401 Sum_probs=238.5
Q ss_pred CceeeEeecccccceEEE-ecCCCEEEEEeCCCcEEEEECCCCcEEE--EecCCCCceEE-EEEe--CCCeEEEEeCCCe
Q 001042 872 GSELRATLKGHTRTVRAI-NSDRGKVVSGSDDQSVLVWDKQTSQLLE--ELKGHDAQVSC-VRML--SGERVLTASHDGT 945 (1178)
Q Consensus 872 ~~~~~~~l~~h~~~V~~~-s~d~~~l~sgs~dg~I~iwd~~t~~~~~--~l~~h~~~V~~-l~~~--~~~~l~sgs~dg~ 945 (1178)
..++.+.+.||...|.++ .-++..++++|.||++++|+-..++.+. .+.+|.+.|.. +++. ++..+++|+.|++
T Consensus 3 ~Y~ls~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 3 QYKLSHELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred cceeEEEeccCccchheeEecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence 345678899999998876 4556679999999999999987666544 56778888777 7776 5667999999999
Q ss_pred EEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEE-cCCEEEEEeC
Q 001042 946 VKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM-DRDTVITGSD 1024 (1178)
Q Consensus 946 V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~-~~~~l~sgs~ 1024 (1178)
+.+|...+..+..++.+|...|.+++...++. +++|+.|.++++|-. +++...+.+|+..|++++. ..+.+++||.
T Consensus 83 i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~~~vTgsa 159 (745)
T KOG0301|consen 83 IIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPENTYVTGSA 159 (745)
T ss_pred EEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCCcEEeccC
Confidence 99999999999999999999999999888887 899999999999975 5666779999999999987 4559999999
Q ss_pred CCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEEe--cCCCE
Q 001042 1025 DWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSIN--AGDHW 1102 (1178)
Q Consensus 1025 dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is--~dg~~ 1102 (1178)
|.+|++|.- ++.++++.+|.+-|.++++-+++ .+++++.||.|+.|++ +| .++....+|++-+.+++ .++..
T Consensus 160 DKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~g--e~l~~~~ghtn~vYsis~~~~~~~ 233 (745)
T KOG0301|consen 160 DKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DG--EVLLEMHGHTNFVYSISMALSDGL 233 (745)
T ss_pred cceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cC--ceeeeeeccceEEEEEEecCCCCe
Confidence 999999984 88999999999999999998765 4889999999999999 45 68888999999999885 78899
Q ss_pred EEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001042 1103 LGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATI 1176 (1178)
Q Consensus 1103 Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~t 1176 (1178)
++++++|++++||+.. ++.+........|+++.+-++|. |++|+.||.||||....
T Consensus 234 Ivs~gEDrtlriW~~~-----------------e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 234 IVSTGEDRTLRIWKKD-----------------ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred EEEecCCceEEEeecC-----------------ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 9999999999999975 44555555556799999999987 66788999999998763
No 95
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=6.7e-23 Score=202.49 Aligned_cols=299 Identities=21% Similarity=0.283 Sum_probs=234.6
Q ss_pred cccccCCcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeecc
Q 001042 762 AEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKR 839 (1178)
Q Consensus 762 ~~~~gh~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~ 839 (1178)
+.+..-...|.+++|.|.|.+.|+|+.. .||--...-..... .-..+ .-+..-..+.-+.|.+.|+|.+|+
T Consensus 26 i~~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~---~hea~-~~pp~v~~kr~khhkgsiyc~~ws--- 98 (350)
T KOG0641|consen 26 INILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRH---AHEAA-KQPPSVLCKRNKHHKGSIYCTAWS--- 98 (350)
T ss_pred EEEecchhheeeEEecCCCceEEeccCCceEEEEccccccCccc---ccccc-cCCCeEEeeeccccCccEEEEEec---
Confidence 3445567788999999999999999887 55543221110000 00000 000001234456799999999998
Q ss_pred ceeccccccCCCCEEEEEeCCCcEEEEcCCCCCce---eeEeecccccceEEE------ecCCCEEEEEe-CCCcEEEEE
Q 001042 840 EVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSE---LRATLKGHTRTVRAI------NSDRGKVVSGS-DDQSVLVWD 909 (1178)
Q Consensus 840 ~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~---~~~~l~~h~~~V~~~------s~d~~~l~sgs-~dg~I~iwd 909 (1178)
|+|+++|+|+.|.+|++.-.+..... .-..+.-|.+.|..+ ...+..|++++ .|..|++-|
T Consensus 99 ---------~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~td 169 (350)
T KOG0641|consen 99 ---------PCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITD 169 (350)
T ss_pred ---------CccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEee
Confidence 89999999999999999876532221 124566788888854 23455666654 466788889
Q ss_pred CCCCcEEEEecCCCCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecC-------CCCCEEEEEEeCCCCEEEEE
Q 001042 910 KQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGR-------CSSAVLCMEYDDSTGILAAG 982 (1178)
Q Consensus 910 ~~t~~~~~~l~~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~-------~~~~I~~l~~sp~~~~l~sg 982 (1178)
..+|+....+.+|++.|.++--.++-.+++|+.|.+|++||++-..++.++.. ..+.|.+++.+|.|++|++|
T Consensus 170 c~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg 249 (350)
T KOG0641|consen 170 CGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASG 249 (350)
T ss_pred cCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeec
Confidence 99999999999999999998766899999999999999999999988887742 23679999999999999999
Q ss_pred eCCCeEEEEECCCCceEEEEecCCccEEEEEEcCC--EEEEEeCCCcEEEEEcCCC----eeeeEeccCCCcEEEEEEec
Q 001042 983 GRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRG----TCDAVLACHAGPVQCVEYSS 1056 (1178)
Q Consensus 983 s~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~--~l~sgs~dg~I~iwd~~~~----~~~~~~~~h~~~I~~l~~sp 1056 (1178)
-.|....+||++.++.++.+..|...|.|+.|++. ++++++.|..|++-|+... -.+.....|...+..+.|+|
T Consensus 250 ~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~ 329 (350)
T KOG0641|consen 250 HADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHP 329 (350)
T ss_pred cCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecC
Confidence 99999999999999999999999999999999876 9999999999999998642 23455667999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECC
Q 001042 1057 SDRGIITGSSDGLLRFWEND 1076 (1178)
Q Consensus 1057 dg~~L~sgs~Dg~I~iwd~~ 1076 (1178)
..-.+++.+.|.++.+|-+.
T Consensus 330 ~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 330 QDFSFISSSADKTATLWALN 349 (350)
T ss_pred ccceeeeccCcceEEEeccC
Confidence 99999999999999999764
No 96
>PTZ00421 coronin; Provisional
Probab=99.93 E-value=2.3e-23 Score=247.52 Aligned_cols=301 Identities=19% Similarity=0.210 Sum_probs=221.0
Q ss_pred CCCcccccCCcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEee
Q 001042 759 QQPAEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCV 836 (1178)
Q Consensus 759 ~~~~~~~gh~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs 836 (1178)
+++..-..|-.++....+++|+..+++++.+ ...|+..++... ......+ ........+.||.+.|++++|+
T Consensus 11 g~~~k~~~~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v----~~~~~~G--~~~~~~~~l~GH~~~V~~v~fs 84 (493)
T PTZ00421 11 GVPARPDRHFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAV----LKHTDYG--KLASNPPILLGQEGPIIDVAFN 84 (493)
T ss_pred cccCCcccceeccccccccCCCCCcEeECCceEEEEEecCCceEE----eeccccc--cCCCCCceEeCCCCCEEEEEEc
Confidence 3444444556777777899998877777777 678987665311 0111111 1111234578999999999998
Q ss_pred eccceeccccccCCCCEEEEEeCCCcEEEEcCCCCC-----ceeeEeecccccceEE--EecCC-CEEEEEeCCCcEEEE
Q 001042 837 TKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRG-----SELRATLKGHTRTVRA--INSDR-GKVVSGSDDQSVLVW 908 (1178)
Q Consensus 837 ~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~-----~~~~~~l~~h~~~V~~--~s~d~-~~l~sgs~dg~I~iw 908 (1178)
| .++++||+|+.||+|++||+...+ ......+.+|...|.+ |+|++ +.|++|+.|++|+||
T Consensus 85 P-----------~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIW 153 (493)
T PTZ00421 85 P-----------FDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVW 153 (493)
T ss_pred C-----------CCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEE
Confidence 3 278999999999999999986332 1345678999999886 57765 689999999999999
Q ss_pred ECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCC-EEEEEEeCCCCEEEEEe---
Q 001042 909 DKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSA-VLCMEYDDSTGILAAGG--- 983 (1178)
Q Consensus 909 d~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~-I~~l~~sp~~~~l~sgs--- 983 (1178)
|+.+++.+..+.+|...|.+++|+ ++..+++|+.||+|++||+++++.+..+..|.+. ...+.|.+++..+++++
T Consensus 154 Dl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~ 233 (493)
T PTZ00421 154 DVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSK 233 (493)
T ss_pred ECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCC
Confidence 999999999999999999999999 7889999999999999999999998888887654 45678888888777654
Q ss_pred -CCCeEEEEECCCCc-eEEEEecCC-ccEEEEEE--cCCEEEEEe-CCCcEEEEEcCCCeeeeEecc-CCCcEEEEEEec
Q 001042 984 -RDAVANIWDIRAGR-QMHKFLGHT-KWIRSIRM--DRDTVITGS-DDWTARMWSISRGTCDAVLAC-HAGPVQCVEYSS 1056 (1178)
Q Consensus 984 -~dg~I~lwD~~~~~-~~~~~~~~~-~~v~~l~~--~~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~-h~~~I~~l~~sp 1056 (1178)
.|+.|++||+++.. ++.....+. ..+....+ +++.+++|+ .||.|++||+.+++....... +..++.+++|.|
T Consensus 234 s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~p 313 (493)
T PTZ00421 234 SQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMP 313 (493)
T ss_pred CCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecc
Confidence 47899999998764 333333333 33444455 456777776 599999999999887766543 455788888888
Q ss_pred CCCEEEEEeCCCcEEEEECCCC
Q 001042 1057 SDRGIITGSSDGLLRFWENDDG 1078 (1178)
Q Consensus 1057 dg~~L~sgs~Dg~I~iwd~~~~ 1078 (1178)
.-..=+. .--..++|.+...
T Consensus 314 k~~~dv~--~~Ei~r~~~l~~~ 333 (493)
T PTZ00421 314 KWSLDTR--KCEIARFYALTYH 333 (493)
T ss_pred ccccccc--ceeeeEEEEecCC
Confidence 5322111 1123466666554
No 97
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=8.3e-24 Score=241.64 Aligned_cols=268 Identities=20% Similarity=0.339 Sum_probs=230.8
Q ss_pred cccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEE--ecCCCEEEEEeCCCcEEEEECCCCcEEEEecC
Q 001042 844 LVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQLLEELKG 921 (1178)
Q Consensus 844 ~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~--s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~ 921 (1178)
++.|+ ..+.||.|.. ..|++|+.. ..........+...|+++ +++|.+|++|..+|.|.|||..+.+.+..+.+
T Consensus 182 lldWs-s~n~laValg-~~vylW~~~--s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~ 257 (484)
T KOG0305|consen 182 LLDWS-SANVLAVALG-QSVYLWSAS--SGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG 257 (484)
T ss_pred Hhhcc-cCCeEEEEec-ceEEEEecC--CCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccC
Confidence 34554 4667777764 469999966 333333333347777764 78999999999999999999999999999998
Q ss_pred -CCCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEE-ecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceE
Q 001042 922 -HDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVAT-VGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQM 999 (1178)
Q Consensus 922 -h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~-~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~ 999 (1178)
|...|.+++|. +..+.+|+.||.|..+|++..+.... +.+|...|..+.|++|++++|+|+.|+.+.|||.....+.
T Consensus 258 ~h~~rvg~laW~-~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~ 336 (484)
T KOG0305|consen 258 SHASRVGSLAWN-SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPK 336 (484)
T ss_pred CcCceeEEEecc-CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcccc
Confidence 99999999997 77899999999999999998876544 7889999999999999999999999999999999888999
Q ss_pred EEEecCCccEEEEEEcC---CEEEEEe--CCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEe--CCCcEEE
Q 001042 1000 HKFLGHTKWIRSIRMDR---DTVITGS--DDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGS--SDGLLRF 1072 (1178)
Q Consensus 1000 ~~~~~~~~~v~~l~~~~---~~l~sgs--~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs--~Dg~I~i 1072 (1178)
..+..|...|.+++|+| +.||+|+ .|+.|++||..+++.+..+. ..+.|.++.|++..+-|+++. .++.|.|
T Consensus 337 ~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~l 415 (484)
T KOG0305|consen 337 FTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITL 415 (484)
T ss_pred EEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEE
Confidence 99999999999999965 4888875 79999999999999988876 467899999999998777654 6778999
Q ss_pred EECCCCceEEEEEecccCCcEEEE--ecCCCEEEEEeCCCcEEEEEcCC
Q 001042 1073 WENDDGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQ 1119 (1178)
Q Consensus 1073 wd~~~~~~~~~~~~~~h~~~i~~i--s~dg~~Lasgs~Dg~I~iwd~~~ 1119 (1178)
|+..+- ..+..+.+|...|..+ +|||..+++|+.|.++++|++-.
T Consensus 416 w~~ps~--~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 416 WKYPSM--KLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred Eecccc--ceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 999885 7888899999999776 89999999999999999999864
No 98
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=8.4e-24 Score=231.69 Aligned_cols=274 Identities=20% Similarity=0.357 Sum_probs=223.3
Q ss_pred cccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEE--EecCCCEEEEEeCCC
Q 001042 826 HAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQ 903 (1178)
Q Consensus 826 H~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~--~s~d~~~l~sgs~dg 903 (1178)
-.+.|++++|+|. +..-+|++++- .+.||+.. +....+++......+.+ |..||+.+++|+..|
T Consensus 25 e~~~vssl~fsp~-----------~P~d~aVt~S~-rvqly~~~--~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG 90 (487)
T KOG0310|consen 25 EHNSVSSLCFSPK-----------HPYDFAVTSSV-RVQLYSSV--TRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESG 90 (487)
T ss_pred ccCcceeEecCCC-----------CCCceEEeccc-EEEEEecc--hhhhhhhHHhhccceeEEEeecCCeEEEccCCcC
Confidence 3467999999963 33334544433 58999854 55555666666777774 578999999999999
Q ss_pred cEEEEECCCCcEEEEecCCCCceEEEEEe--CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCC-CCEEE
Q 001042 904 SVLVWDKQTSQLLEELKGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDS-TGILA 980 (1178)
Q Consensus 904 ~I~iwd~~t~~~~~~l~~h~~~V~~l~~~--~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~-~~~l~ 980 (1178)
.|+|+|..+...+..+.+|+.+|..+.|+ ++..+++|+.|+.+++||+.+......+.+|++.|.|.+|+|. +..++
T Consensus 91 ~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivv 170 (487)
T KOG0310|consen 91 HVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVV 170 (487)
T ss_pred cEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEE
Confidence 99999988777788899999999999999 6778899999999999999999886688999999999999995 55889
Q ss_pred EEeCCCeEEEEECCCC-ceEEEEecCCccEEEEEE--cCCEEEEEeCCCcEEEEEcCCC-eeeeEeccCCCcEEEEEEec
Q 001042 981 AGGRDAVANIWDIRAG-RQMHKFLGHTKWIRSIRM--DRDTVITGSDDWTARMWSISRG-TCDAVLACHAGPVQCVEYSS 1056 (1178)
Q Consensus 981 sgs~dg~I~lwD~~~~-~~~~~~~~~~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~-~~~~~~~~h~~~I~~l~~sp 1056 (1178)
+|+.||.|++||+++. ..+.++ .|..+|..+.+ ++..+++++. ..|++||+.+| +.+..+..|...|+|+++..
T Consensus 171 tGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s 248 (487)
T KOG0310|consen 171 TGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLAS 248 (487)
T ss_pred ecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeec
Confidence 9999999999999987 555555 78899999988 4457777654 48999999865 44555556999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE--ecCCCEEEEEeCCCcEEEEEcC
Q 001042 1057 SDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRP 1118 (1178)
Q Consensus 1057 dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~dg~~Lasgs~Dg~I~iwd~~ 1118 (1178)
++..|++||-|+.|++||+.+- +.+..+. -.++|.++ +|+++.++.|..||.+.+-+..
T Consensus 249 ~~~rLlS~sLD~~VKVfd~t~~--Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 249 DSTRLLSGSLDRHVKVFDTTNY--KVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred CCceEeecccccceEEEEccce--EEEEeee-cccceeeEEecCCCceEEEecccceeeeehhh
Confidence 9999999999999999997665 5555554 45677665 8999999999999998877544
No 99
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=1e-23 Score=229.14 Aligned_cols=273 Identities=23% Similarity=0.381 Sum_probs=228.6
Q ss_pred eEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCce--ee-------------Eee-cccc
Q 001042 820 IRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSE--LR-------------ATL-KGHT 883 (1178)
Q Consensus 820 ~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~--~~-------------~~l-~~h~ 883 (1178)
...+..|.-+|++++++ +|+++..+++.||+|.=|++...... .. ..- .+|.
T Consensus 135 ~~~~~~H~~s~~~vals------------~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~ 202 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALS------------PDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHV 202 (479)
T ss_pred ceeeccccCcceEEEee------------ccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccccccc
Confidence 55678899999999998 89999999999999999997632211 11 111 2677
Q ss_pred cceE--EEecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEe
Q 001042 884 RTVR--AINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATV 960 (1178)
Q Consensus 884 ~~V~--~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~ 960 (1178)
..+. ++++||++|++|+.|..|.||+.++.+.++.+.+|.+.|.+++|- ..+.+++++.|++|++|++.....+.++
T Consensus 203 keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetl 282 (479)
T KOG0299|consen 203 KEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETL 282 (479)
T ss_pred ceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHH
Confidence 7776 469999999999999999999999999999999999999999999 5677999999999999999999889999
Q ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEE-cCCEEEEEeCCCcEEEEEcCCCeee
Q 001042 961 GRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM-DRDTVITGSDDWTARMWSISRGTCD 1039 (1178)
Q Consensus 961 ~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~-~~~~l~sgs~dg~I~iwd~~~~~~~ 1039 (1178)
.+|.+.|.++....-++.+.+|+.|+++++|++.. +....+.++.+.+-|+++ +.+.+++|+.||.|.+|++.+.+++
T Consensus 283 yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkpl 361 (479)
T KOG0299|consen 283 YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPL 361 (479)
T ss_pred hCCccceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCce
Confidence 99999999999999999898999999999999943 334456788999999999 7889999999999999999998887
Q ss_pred eEec-cC-----------CCcEEEEEEecCCCEEEEEeCCCcEEEEECCCC--ceEEEEEecccCCcEEEE--ecCCCEE
Q 001042 1040 AVLA-CH-----------AGPVQCVEYSSSDRGIITGSSDGLLRFWENDDG--GIKCVKNVTIHSSAILSI--NAGDHWL 1103 (1178)
Q Consensus 1040 ~~~~-~h-----------~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~--~~~~~~~~~~h~~~i~~i--s~dg~~L 1103 (1178)
.+.. +| ..+|++++..|...++++|+.+|.|++|.+.++ ....+..+. -.+.|.++ +.+|+++
T Consensus 362 f~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~i 440 (479)
T KOG0299|consen 362 FTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRI 440 (479)
T ss_pred eEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEE
Confidence 7654 12 238999999999999999999999999999988 334444443 34555554 6888866
Q ss_pred EEE
Q 001042 1104 GIG 1106 (1178)
Q Consensus 1104 asg 1106 (1178)
++|
T Consensus 441 vag 443 (479)
T KOG0299|consen 441 VAG 443 (479)
T ss_pred EEe
Confidence 665
No 100
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=7.7e-24 Score=218.56 Aligned_cols=317 Identities=19% Similarity=0.309 Sum_probs=249.5
Q ss_pred cccccCCcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeecc
Q 001042 762 AEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKR 839 (1178)
Q Consensus 762 ~~~~gh~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~ 839 (1178)
..+.||..+|..++-......+.+++.| .+||.++++. |+..+.||.+.|++|.|+
T Consensus 142 re~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~-------------------CL~~Y~GH~GSVNsikfh--- 199 (481)
T KOG0300|consen 142 RELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGA-------------------CLATYTGHTGSVNSIKFH--- 199 (481)
T ss_pred hhhcccccceeeehhhcCCcceeecccccceeEEeecccc-------------------ceeeecccccceeeEEec---
Confidence 4467899999999877777788899888 9999999998 999999999999999998
Q ss_pred ceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeE--eecccccceE--EEecCCCEEEEE--eCC-CcEEEEECCC
Q 001042 840 EVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRA--TLKGHTRTVR--AINSDRGKVVSG--SDD-QSVLVWDKQT 912 (1178)
Q Consensus 840 ~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~--~l~~h~~~V~--~~s~d~~~l~sg--s~d-g~I~iwd~~t 912 (1178)
+.+.++++++.|++-.||....+ .+.-. .-.+|++.-- +-..+. ....+ ..| .+|+
T Consensus 200 ---------~s~~L~lTaSGD~taHIW~~av~-~~vP~~~a~~~hSsEeE~e~sDe~~-~d~d~~~~sD~~tiR------ 262 (481)
T KOG0300|consen 200 ---------NSGLLLLTASGDETAHIWKAAVN-WEVPSNNAPSDHSSEEEEEHSDEHN-RDTDSSEKSDGHTIR------ 262 (481)
T ss_pred ---------cccceEEEccCCcchHHHHHhhc-CcCCCCCCCCCCCchhhhhcccccc-cccccccccCCceee------
Confidence 78999999999999999983211 11000 0112221110 100111 11111 112 2333
Q ss_pred CcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 001042 913 SQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIW 991 (1178)
Q Consensus 913 ~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lw 991 (1178)
.++..+.+|.+.|.+..|. .++.+++++.|.+..+||+++|+.+..+.+|+...+.++-+|..+++++.+.|.+.++|
T Consensus 263 -vPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLW 341 (481)
T KOG0300|consen 263 -VPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLW 341 (481)
T ss_pred -eeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEec
Confidence 3677899999999999998 78899999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCC-ceEEEEecCCccEEEEEEc-CCEEEEEeCCCcEEEEEcCCCe-eeeEeccCCCcEEEEEEecCCCEEEEEeCCC
Q 001042 992 DIRAG-RQMHKFLGHTKWIRSIRMD-RDTVITGSDDWTARMWSISRGT-CDAVLACHAGPVQCVEYSSSDRGIITGSSDG 1068 (1178)
Q Consensus 992 D~~~~-~~~~~~~~~~~~v~~l~~~-~~~l~sgs~dg~I~iwd~~~~~-~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg 1068 (1178)
|.+.. ..+..|++|...|+++.|. ++.+++|+.|.+|++||+++.. ++.++. ..++++.++.+..+..++.-..+.
T Consensus 342 DFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNR 420 (481)
T KOG0300|consen 342 DFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNR 420 (481)
T ss_pred cchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCc
Confidence 99854 3467899999999999995 6689999999999999998864 455665 577899999999899999998999
Q ss_pred cEEEEECCCCceEEEE--EecccCCcEEEEec----CCCEEEEEeCCCcEEEEEcCC
Q 001042 1069 LLRFWENDDGGIKCVK--NVTIHSSAILSINA----GDHWLGIGAADNSMSLFHRPQ 1119 (1178)
Q Consensus 1069 ~I~iwd~~~~~~~~~~--~~~~h~~~i~~is~----dg~~Lasgs~Dg~I~iwd~~~ 1119 (1178)
.|++||++......+. .-.+|...|.+... --.-|.+++.|..+.-|++..
T Consensus 421 qvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 421 QVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred eEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecc
Confidence 9999999876433222 44678877777632 224577888999999999863
No 101
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.92 E-value=2.1e-23 Score=224.56 Aligned_cols=276 Identities=22% Similarity=0.364 Sum_probs=242.5
Q ss_pred cceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEE--ecCCCEEEEEeCCCcE
Q 001042 828 GAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSV 905 (1178)
Q Consensus 828 ~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~--s~d~~~l~sgs~dg~I 905 (1178)
..++++..+ +....+++|+.|.++.++|.. .......+.||...|+.+ +++...+++++.|..|
T Consensus 220 pgi~ald~~------------~s~~~ilTGG~d~~av~~d~~--s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i 285 (506)
T KOG0289|consen 220 PGITALDII------------PSSSKILTGGEDKTAVLFDKP--SNQILATLKGHTKKITSVKFHKDLDTVITASADEII 285 (506)
T ss_pred CCeeEEeec------------CCCCcceecCCCCceEEEecc--hhhhhhhccCcceEEEEEEeccchhheeecCCcceE
Confidence 346777665 446789999999999999955 677789999999999975 8899999999999999
Q ss_pred EEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecC--CCCCEEEEEEeCCCCEEEEE
Q 001042 906 LVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGR--CSSAVLCMEYDDSTGILAAG 982 (1178)
Q Consensus 906 ~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~--~~~~I~~l~~sp~~~~l~sg 982 (1178)
+||.............|.++|+.+..+ .++++++++.||+..+.|+++|.++..... ..-.+++.+|+|||..+.+|
T Consensus 286 ~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtg 365 (506)
T KOG0289|consen 286 RVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTG 365 (506)
T ss_pred EeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEecc
Confidence 999998888888888999999999998 899999999999999999999998776644 34568999999999999999
Q ss_pred eCCCeEEEEECCCCceEEEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCeeeeEeccC-CCcEEEEEEecCCC
Q 001042 983 GRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMD--RDTVITGSDDWTARMWSISRGTCDAVLACH-AGPVQCVEYSSSDR 1059 (1178)
Q Consensus 983 s~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h-~~~I~~l~~spdg~ 1059 (1178)
..||.+++||++++..+..|.+|.++|.+++|+ |-+++++++|+.|++||++..+...++.-. ...+.++.|++.|.
T Consensus 366 t~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt 445 (506)
T KOG0289|consen 366 TPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGT 445 (506)
T ss_pred CCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCC
Confidence 999999999999999999999999999999995 449999999999999999998877777633 23799999999999
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE--ecCCCEEEEEeCCCcEEEEEc
Q 001042 1060 GIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHR 1117 (1178)
Q Consensus 1060 ~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~dg~~Lasgs~Dg~I~iwd~ 1117 (1178)
+|+.++.|=.|++++-.+..+.++..+..|.+....+ ....++++++|.|..++++.+
T Consensus 446 ~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 446 YLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 9999999988888888888889999998888666555 466789999999999888764
No 102
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.92 E-value=2.6e-23 Score=223.88 Aligned_cols=270 Identities=21% Similarity=0.379 Sum_probs=236.0
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEE
Q 001042 890 NSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVL 968 (1178)
Q Consensus 890 s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~ 968 (1178)
.+..+.+++|+.|.++.++|..+++.+..++||...|+.+.++ +...+++++.|..|++|.............|..+|+
T Consensus 228 ~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~ 307 (506)
T KOG0289|consen 228 IPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVT 307 (506)
T ss_pred cCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccce
Confidence 3445789999999999999999999999999999999999999 677899999999999999988888888889999999
Q ss_pred EEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecC--CccEEEEEEcCC--EEEEEeCCCcEEEEEcCCCeeeeEecc
Q 001042 969 CMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGH--TKWIRSIRMDRD--TVITGSDDWTARMWSISRGTCDAVLAC 1044 (1178)
Q Consensus 969 ~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~--~~~v~~l~~~~~--~l~sgs~dg~I~iwd~~~~~~~~~~~~ 1044 (1178)
.+..+|.|.++++++.||...+.|++++.++...... .-.+++.+|+++ .+.+|..||.|+|||+.++.....|.+
T Consensus 308 ~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpg 387 (506)
T KOG0289|consen 308 GLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPG 387 (506)
T ss_pred eeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCC
Confidence 9999999999999999999999999999988776543 335888999655 888999999999999999999999999
Q ss_pred CCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccC---CcEEEEecCCCEEEEEeCCCcEEEEEcCCCc
Q 001042 1045 HAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHS---SAILSINAGDHWLGIGAADNSMSLFHRPQER 1121 (1178)
Q Consensus 1045 h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~---~~i~~is~dg~~Lasgs~Dg~I~iwd~~~~~ 1121 (1178)
|.++|..++|+.+|-+|++++.|+.|++||++.. +..+++.... ..-.++...|.++++++.|=.|++++-.
T Consensus 388 ht~~vk~i~FsENGY~Lat~add~~V~lwDLRKl--~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~--- 462 (506)
T KOG0289|consen 388 HTGPVKAISFSENGYWLATAADDGSVKLWDLRKL--KNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKK--- 462 (506)
T ss_pred CCCceeEEEeccCceEEEEEecCCeEEEEEehhh--cccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecc---
Confidence 9999999999999999999999999999999876 3444443322 2334557889999999877667766643
Q ss_pred cccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001042 1122 LGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEA 1174 (1178)
Q Consensus 1122 ~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv 1174 (1178)
...|.+...+..|.+..+++.|..+.++++++|.|..++++.+
T Consensus 463 ----------~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 463 ----------TKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ----------cccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 2368999999999999999999999999999999999999865
No 103
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.7e-23 Score=216.11 Aligned_cols=303 Identities=21% Similarity=0.369 Sum_probs=243.9
Q ss_pred EEEEeCCCcEEEEcCCCCCceeeEeecccccceEEEec--CCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEE
Q 001042 854 FISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINS--DRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRM 931 (1178)
Q Consensus 854 Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~--d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~ 931 (1178)
+++.-.+++++ ..+.+.+.||...|+.++. ....+.+++.|.+.+||.+++|.++..+.||.+.|+++.|
T Consensus 127 ivssFk~~t~~--------~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikf 198 (481)
T KOG0300|consen 127 IVSSFKDGTVK--------FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKF 198 (481)
T ss_pred heeeecCCcee--------EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEe
Confidence 44555566533 3455778999999998753 3457889999999999999999999999999999999999
Q ss_pred e-CCCeEEEEeCCCeEEEEeC------CC------------------------------C----eEEEEecCCCCCEEEE
Q 001042 932 L-SGERVLTASHDGTVKMWDV------RT------------------------------D----TCVATVGRCSSAVLCM 970 (1178)
Q Consensus 932 ~-~~~~l~sgs~dg~V~iwd~------~~------------------------------~----~~~~~~~~~~~~I~~l 970 (1178)
+ .+.++++++.|++..||.. .. + .++..+.+|...|.+.
T Consensus 199 h~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~ 278 (481)
T KOG0300|consen 199 HNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSAC 278 (481)
T ss_pred ccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEeh
Confidence 9 6778889999999999962 10 0 1344567788889999
Q ss_pred EEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEcCC--EEEEEeCCCcEEEEEcCCC-eeeeEeccCCC
Q 001042 971 EYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRG-TCDAVLACHAG 1047 (1178)
Q Consensus 971 ~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~--~l~sgs~dg~I~iwd~~~~-~~~~~~~~h~~ 1047 (1178)
.|-..|+.+++++.|.+..+||+++++.+..+.+|....+.++-++. .+++++.|.+.++||++.. ..+..|++|..
T Consensus 279 dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtd 358 (481)
T KOG0300|consen 279 DWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTD 358 (481)
T ss_pred hhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeeccccc
Confidence 99999999999999999999999999999999999999988887654 7889999999999999854 45678999999
Q ss_pred cEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEeccc-CCcEEEEecCCCEEEEEeCCCcEEEEEcCCCcccccc
Q 001042 1048 PVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIH-SSAILSINAGDHWLGIGAADNSMSLFHRPQERLGGFS 1126 (1178)
Q Consensus 1048 ~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h-~~~i~~is~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~ 1126 (1178)
.|+++.|.-+. .+++|+.|.+|++||+++-. ..+.++... ...-.+++..+..+|.--++..|++||+...++....
T Consensus 359 tVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMR-splATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlP 436 (481)
T KOG0300|consen 359 TVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMR-SPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLP 436 (481)
T ss_pred ceeEEEEecCC-ceeecCCCceEEEeeecccc-CcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCC
Confidence 99999998765 48999999999999998764 334444322 2222455777788888888899999999755443222
Q ss_pred CCCCCccceeEeeccCCCcccEEEEEEcCCC--CEEEEEeCCCcEEEEECCCC
Q 001042 1127 GTGSKMSGWQLYRTPQKTVAVVRCIASDLER--KRICSGGRNGLLRLWEATIN 1177 (1178)
Q Consensus 1127 ~~g~~~~~~~~~~~~~~h~~~V~~lafspdg--~~Las~s~Dg~V~IWdv~tg 1177 (1178)
. ..-++|...|+|++|..+- .-|.++|-|..+.=|++.+.
T Consensus 437 r-----------tsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 437 R-----------TSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred c-----------ccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 1 1235899999999998653 34889999999999999865
No 104
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=7.1e-22 Score=223.97 Aligned_cols=371 Identities=15% Similarity=0.179 Sum_probs=279.1
Q ss_pred ccCCcceEEEEecCCCCcccccccc-eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceec
Q 001042 765 SGIGRSWVQSMFSREASSRSHSFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWD 843 (1178)
Q Consensus 765 ~gh~~~i~~~aFSpdg~~las~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~ 843 (1178)
-+..+.|-.++|++.|+++-++.+. |.-||+.++. .+..+....++|++++.+
T Consensus 66 g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk-------------------~~~~~d~~gg~IWsiai~------- 119 (691)
T KOG2048|consen 66 GPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLK-------------------QKYNIDSNGGAIWSIAIN------- 119 (691)
T ss_pred cCCCCceeeEEEccCCeEEeecCCceEEEEecccCc-------------------eeEEecCCCcceeEEEeC-------
Confidence 3445778888999888877777776 9999999888 677888889999999998
Q ss_pred cccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEE--ecCCCEEEEEeCCCcEEEEECCCCcEEEEec-
Q 001042 844 LVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQLLEELK- 920 (1178)
Q Consensus 844 ~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~--s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~- 920 (1178)
|.+..++.|++||.+...+...+.-+....+...++.|.++ ++++..+++|+.||.|++||+.++..+....
T Consensus 120 -----p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~ 194 (691)
T KOG2048|consen 120 -----PENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITM 194 (691)
T ss_pred -----CccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeee
Confidence 77899999999998888876644444445666667888865 6888889999999999999999998776221
Q ss_pred -------CCCCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 001042 921 -------GHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDI 993 (1178)
Q Consensus 921 -------~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~ 993 (1178)
+...-|+++.+..++.+++|..-|+|.+||...+..++.+..|...|.+++..++++.++++|.|+.|..|..
T Consensus 195 ~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~ 274 (691)
T KOG2048|consen 195 QLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSL 274 (691)
T ss_pred cccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEe
Confidence 1234577888778889999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCce----EEEEecCCccEEEEEEcCCEEEEEeCCCcEEEEEcCCC-----------------------eeeeEe----
Q 001042 994 RAGRQ----MHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRG-----------------------TCDAVL---- 1042 (1178)
Q Consensus 994 ~~~~~----~~~~~~~~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~-----------------------~~~~~~---- 1042 (1178)
.+++. ......|...|.+++.-++.+++|+.|.++.+-..+.. .....+
T Consensus 275 ~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~ 354 (691)
T KOG2048|consen 275 TTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHG 354 (691)
T ss_pred cCCccceeeeccccCCcccceeeeeecceEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEecccc
Confidence 77643 22345688899999998888899998888877543220 000000
Q ss_pred ------------------------ccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecc---c--CCcE
Q 001042 1043 ------------------------ACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTI---H--SSAI 1093 (1178)
Q Consensus 1043 ------------------------~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~---h--~~~i 1093 (1178)
......|.+.+.||+|++++.+.- ...++|.+.......+..... . ...-
T Consensus 355 v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~ 433 (691)
T KOG2048|consen 355 VDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTV-SRTKIYRLQPDPNVKVINVDDVPLALLDASA 433 (691)
T ss_pred ccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeec-cceEEEEeccCcceeEEEeccchhhhcccee
Confidence 112235889999999999988763 457888877643222222221 1 2222
Q ss_pred EEEecCCCEEEEEe-CCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 001042 1094 LSINAGDHWLGIGA-ADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLW 1172 (1178)
Q Consensus 1094 ~~is~dg~~Lasgs-~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IW 1172 (1178)
..++-|++.++.++ .+..+.+++..+. ++..+... ..++....|+.++.|+||++||..+.+|.|.+|
T Consensus 434 i~ftid~~k~~~~s~~~~~le~~el~~p-------s~kel~~~----~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~ 502 (691)
T KOG2048|consen 434 ISFTIDKNKLFLVSKNIFSLEEFELETP-------SFKELKSI----QSQAKCPSISRLVVSSDGNYIAAISTRGQIFVY 502 (691)
T ss_pred eEEEecCceEEEEecccceeEEEEecCc-------chhhhhcc----ccccCCCcceeEEEcCCCCEEEEEeccceEEEE
Confidence 34466777777777 6777888887643 22221111 112456679999999999999999999999999
Q ss_pred ECCCCC
Q 001042 1173 EATINI 1178 (1178)
Q Consensus 1173 dv~tg~ 1178 (1178)
++++.+
T Consensus 503 nl~~~~ 508 (691)
T KOG2048|consen 503 NLETLE 508 (691)
T ss_pred Ecccce
Confidence 999863
No 105
>PF12335 SBF2: Myotubularin protein ; InterPro: IPR022096 This domain family is found in eukaryotes, and is approximately 220 amino acids in length. The family is found in association with PF02141 from PFAM, PF03456 from PFAM, PF03455 from PFAM. This family is the middle region of SBF2, a member of the myotubularin family. Myotubularin-related proteins have been suggested to work in phosphoinositide-mediated signalling events that may also convey control of myelination. Mutations of SBF2 are implicated in Charcot-Marie-Tooth disease.
Probab=99.92 E-value=2.5e-25 Score=230.82 Aligned_cols=144 Identities=23% Similarity=0.338 Sum_probs=130.7
Q ss_pred CCCcccccccCccccCC-hHHHHHhhh---------ccchhhhhhhhHHHHHHHhcCCCCCCCCccccccEEeeeccccc
Q 001042 522 NSPPSMLVSKDSKDSLS-PIERAAERD---------RMVLDIKVKLQGLWLRLLKLGATDDPLSSFEYGTILALIESDAE 591 (1178)
Q Consensus 522 p~~p~~~~~~~~~~~~~-~~~r~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (1178)
|+||++.++.++...+. |++||+|++ +|++|++|.+| +|+|+||. +.+|
T Consensus 1 ~~~p~~~~~~~~~~~~~~~s~rrlevlr~ci~~if~~k~~e~~k~~~-av~~~lk~--------------------~~aR 59 (225)
T PF12335_consen 1 PMGPPVVSIVDKNGNVFANSARRLEVLRNCISFIFDNKILEARKSLP-AVLRALKS--------------------RSAR 59 (225)
T ss_pred CCCCCchhHHhcccchhhhHHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHcc--------------------chHH
Confidence 78888877777766555 999999999 99999999999 99999999 9999
Q ss_pred CCCCCCcchhhhhccccccccccChHHHHHHHHHHHHHHhhhhccCChHHHHHHH-HHHHHHHhhhcCCchhHHHHHHhh
Q 001042 592 GIGGSGFVECIREHIHSGWHCQLTEEQFIAVKELLKTAIGRATSRNDVSTIRDAL-EVSAEMFKKDANNVSDYVQRHLIS 670 (1178)
Q Consensus 592 ~~~~~~~~~~l~~~~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~d~~~~~~~l-~~~~~~~~~~~~~~~~y~q~~l~~ 670 (1178)
.++ |++|.+|++ ++++.|+++||++|++|||+||++|++ .|+++++++| ++|+.||||+++++.+|+++++..
T Consensus 60 ~~~----~~~L~~~~~-~~k~~L~~~qF~~lv~lin~aLq~~s~-~dd~~~Aa~LL~ls~~fyrkl~~g~~eylyt~i~~ 133 (225)
T PF12335_consen 60 QAF----CRELSKHVK-SNKAVLDDQQFDYLVRLINCALQDCSE-SDDYGIAAALLPLSTAFYRKLSNGVQEYLYTCIQS 133 (225)
T ss_pred HHH----HHHHHHHHh-cCCccCCHHHHHHHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHcCcchhHHHHHHHHc
Confidence 988 999999999 788899999999999999999999999 7777777777 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-Hhc
Q 001042 671 LSIWEELRFWEGYFDYLMD-RFS 692 (1178)
Q Consensus 671 ~p~~~~~~~~~~~~~~~l~-~~~ 692 (1178)
.|||+|++|||++|.+-++ ..+
T Consensus 134 hpvW~n~~FWe~~F~~~vq~~ir 156 (225)
T PF12335_consen 134 HPVWQNQRFWEAAFFDDVQSQIR 156 (225)
T ss_pred CccccchhhHHHHHHHHHHHHHH
Confidence 9999999999999976666 444
No 106
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.92 E-value=3.2e-23 Score=234.76 Aligned_cols=337 Identities=17% Similarity=0.283 Sum_probs=258.8
Q ss_pred ceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCc-----------------------ee
Q 001042 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGS-----------------------EL 875 (1178)
Q Consensus 819 ~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~-----------------------~~ 875 (1178)
.+..+.||.+.|.+++|.. ...+.-+|||+|.|..||||.+...+. +.
T Consensus 183 ~v~el~GH~DWIrsl~f~~---------~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i 253 (764)
T KOG1063|consen 183 RVAELEGHTDWIRSLAFAR---------LGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEI 253 (764)
T ss_pred EEEEeeccchhhhhhhhhc---------cCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeE
Confidence 6889999999999999973 123456899999999999998653220 11
Q ss_pred e------EeecccccceEEE--ecCCCEEEEEeCCCcEEEEECCCCcE-------EEEecCCCCceEEEEEe-CCCeEEE
Q 001042 876 R------ATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQL-------LEELKGHDAQVSCVRML-SGERVLT 939 (1178)
Q Consensus 876 ~------~~l~~h~~~V~~~--s~d~~~l~sgs~dg~I~iwd~~t~~~-------~~~l~~h~~~V~~l~~~-~~~~l~s 939 (1178)
. ..+.||.+.|.++ +|.+..|++++.|.++.+|...+..- +....+.........|+ +++.+++
T Consensus 254 ~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~ 333 (764)
T KOG1063|consen 254 QYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIA 333 (764)
T ss_pred EEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEE
Confidence 1 2234999999975 78888999999999999998765421 22233445567778888 7788889
Q ss_pred EeCCCeEEEEeCCCC---eEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc----eEEEEecCCccEEEE
Q 001042 940 ASHDGTVKMWDVRTD---TCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGR----QMHKFLGHTKWIRSI 1012 (1178)
Q Consensus 940 gs~dg~V~iwd~~~~---~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~----~~~~~~~~~~~v~~l 1012 (1178)
-+..|..++|..... .....+.+|.+.|++++|+|.|.++++.+.|.+-+++-.-..+ .+.+-+-|...++|+
T Consensus 334 ~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~ 413 (764)
T KOG1063|consen 334 HGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCL 413 (764)
T ss_pred ecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceee
Confidence 999999999983332 2334567899999999999999999999999999998754211 223334678889999
Q ss_pred EE-c-CCEEEEEeCCCcEEEEEcCC-------------------------------------------Cee---------
Q 001042 1013 RM-D-RDTVITGSDDWTARMWSISR-------------------------------------------GTC--------- 1038 (1178)
Q Consensus 1013 ~~-~-~~~l~sgs~dg~I~iwd~~~-------------------------------------------~~~--------- 1038 (1178)
++ + +..+++|.++..+|+|+... |..
T Consensus 414 ~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~ 493 (764)
T KOG1063|consen 414 SFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPL 493 (764)
T ss_pred ehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeeccc
Confidence 98 4 34888888999999987421 000
Q ss_pred ------------------------eeEeccCCCcEEEEEEecCCCEEEEEeCC-----CcEEEEECCCCceEEEEEeccc
Q 001042 1039 ------------------------DAVLACHAGPVQCVEYSSSDRGIITGSSD-----GLLRFWENDDGGIKCVKNVTIH 1089 (1178)
Q Consensus 1039 ------------------------~~~~~~h~~~I~~l~~spdg~~L~sgs~D-----g~I~iwd~~~~~~~~~~~~~~h 1089 (1178)
++.+-+|...|.+++.+|+|+.+|+++.. ..|++|+..+- .....+.+|
T Consensus 494 ~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W--~~~~~L~~H 571 (764)
T KOG1063|consen 494 AAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW--LQVQELEGH 571 (764)
T ss_pred ccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch--hhhheeccc
Confidence 11234678889999999999999998754 35899988776 666688999
Q ss_pred CCcEEEE--ecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCC
Q 001042 1090 SSAILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNG 1167 (1178)
Q Consensus 1090 ~~~i~~i--s~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg 1167 (1178)
+-.|+.+ ||||++|++.|.|.++.+|.........+ . ....+.|...|++..|+||++++||+|.|.
T Consensus 572 sLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~----------~-fa~~k~HtRIIWdcsW~pde~~FaTaSRDK 640 (764)
T KOG1063|consen 572 SLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEF----------R-FACLKAHTRIIWDCSWSPDEKYFATASRDK 640 (764)
T ss_pred ceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhh----------h-hccccccceEEEEcccCcccceeEEecCCc
Confidence 9999766 89999999999999999999864321110 1 223678999999999999999999999999
Q ss_pred cEEEEECCCC
Q 001042 1168 LLRLWEATIN 1177 (1178)
Q Consensus 1168 ~V~IWdv~tg 1177 (1178)
+|+||....+
T Consensus 641 ~VkVW~~~~~ 650 (764)
T KOG1063|consen 641 KVKVWEEPDL 650 (764)
T ss_pred eEEEEeccCc
Confidence 9999998764
No 107
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.92 E-value=5.8e-22 Score=216.75 Aligned_cols=355 Identities=16% Similarity=0.279 Sum_probs=268.8
Q ss_pred cceEEEEecCCCCcccccccc-eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceeccccc
Q 001042 769 RSWVQSMFSREASSRSHSFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGD 847 (1178)
Q Consensus 769 ~~i~~~aFSpdg~~las~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~~ 847 (1178)
.-|.|++|.++|..+..-++. |.||+..+.. ..+....|.+.|.+++..
T Consensus 247 k~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~-------------------~~k~~~aH~ggv~~L~~l----------- 296 (626)
T KOG2106|consen 247 KFVLCVTFLENGDVITGDSGGNILIWSKGTNR-------------------ISKQVHAHDGGVFSLCML----------- 296 (626)
T ss_pred eEEEEEEEcCCCCEEeecCCceEEEEeCCCce-------------------EEeEeeecCCceEEEEEe-----------
Confidence 457788999999876554544 9999987655 344444999999999986
Q ss_pred cCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceE
Q 001042 848 REDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVS 927 (1178)
Q Consensus 848 s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~ 927 (1178)
.+|.+| ||+.|..|..||-+ -.......+....+++..+.+.+.-++.|...+.|.-=.++++-. ....+|....+
T Consensus 297 -r~Gtll-SGgKDRki~~Wd~~-y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~-~~v~gh~delw 372 (626)
T KOG2106|consen 297 -RDGTLL-SGGKDRKIILWDDN-YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFT-LTVQGHGDELW 372 (626)
T ss_pred -cCccEe-ecCccceEEecccc-ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCce-EEEEeccccee
Confidence 666655 59999999999943 222223455667788988887766699998888887666666544 34567999999
Q ss_pred EEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCC
Q 001042 928 CVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHT 1006 (1178)
Q Consensus 928 ~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~ 1006 (1178)
.++.+ +.+.+++++.|+.+++|+ ..+...+. ....++.|+.|+|.| .+|.|+..|...+.|.++...+..- ..+
T Consensus 373 gla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~-~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~-~d~ 447 (626)
T KOG2106|consen 373 GLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTK-IIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIH-TDN 447 (626)
T ss_pred eEEcCCChhheeeccCcceEEEcc--CCceeEEE-EecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEE-ecC
Confidence 99988 678899999999999999 44444443 346788999999999 9999999999999999985555444 448
Q ss_pred ccEEEEEE--cCCEEEEEeCCCcEEEEEcCCCe-eeeEe-ccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCc-e-
Q 001042 1007 KWIRSIRM--DRDTVITGSDDWTARMWSISRGT-CDAVL-ACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGG-I- 1080 (1178)
Q Consensus 1007 ~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~-~~~~~-~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~-~- 1080 (1178)
.+++++++ ++.++|.|+.|+.|++|.+..+. ..... +.+.++|+.+.||+|++++.+-+.|-.|..|...... .
T Consensus 448 ~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~t 527 (626)
T KOG2106|consen 448 EQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQIT 527 (626)
T ss_pred CceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccc
Confidence 89999998 56699999999999999987643 32222 2355899999999999999999999999999433211 0
Q ss_pred ----------EEEEEec----ccCCcE--EEEecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCC
Q 001042 1081 ----------KCVKNVT----IHSSAI--LSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKT 1144 (1178)
Q Consensus 1081 ----------~~~~~~~----~h~~~i--~~is~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h 1144 (1178)
.|..-+. .+...+ .+.+.+.+++|+|.+.|.|++|..+-.... .......+|
T Consensus 528 s~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~r------------A~~he~~gh 595 (626)
T KOG2106|consen 528 SVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPR------------APSHEYGGH 595 (626)
T ss_pred eecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCc------------ccceeeccc
Confidence 1111110 122222 223678899999999999999997632110 334566799
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001042 1145 VAVVRCIASDLERKRICSGGRNGLLRLWEA 1174 (1178)
Q Consensus 1145 ~~~V~~lafspdg~~Las~s~Dg~V~IWdv 1174 (1178)
+..|++|+|..+...+++.+.|..|..|++
T Consensus 596 s~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 596 SSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred cceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 999999999998888888889999999987
No 108
>PTZ00420 coronin; Provisional
Probab=99.92 E-value=3.3e-22 Score=238.32 Aligned_cols=245 Identities=12% Similarity=0.211 Sum_probs=193.4
Q ss_pred EeCCCcEEEEECCCCcEEEEecCCCCceEEEEEeC--CCeEEEEeCCCeEEEEeCCCCe--------EEEEecCCCCCEE
Q 001042 899 GSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLS--GERVLTASHDGTVKMWDVRTDT--------CVATVGRCSSAVL 968 (1178)
Q Consensus 899 gs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~~--~~~l~sgs~dg~V~iwd~~~~~--------~~~~~~~~~~~I~ 968 (1178)
|+.++.+++|+......+..+.+|.+.|.+++|++ ++.+++|+.||+|++||+.++. ++..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 56678999999988888889999999999999994 6799999999999999997642 3446778999999
Q ss_pred EEEEeCCCCE-EEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCeeeeEeccC
Q 001042 969 CMEYDDSTGI-LAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMD--RDTVITGSDDWTARMWSISRGTCDAVLACH 1045 (1178)
Q Consensus 969 ~l~~sp~~~~-l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h 1045 (1178)
+++|+|++.. +++++.||.|++||+++++.+..+. +...|.+++|+ +..+++++.|+.|++||+++++.+.++.+|
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH 208 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH 208 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc
Confidence 9999998875 4688999999999999998877775 56789999994 568999999999999999999999999999
Q ss_pred CCcEEEE-----EEecCCCEEEEEeCCC----cEEEEECCC-CceEEEEEecccCCcEEEE--ecCCCEEEEEeCCCcEE
Q 001042 1046 AGPVQCV-----EYSSSDRGIITGSSDG----LLRFWENDD-GGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMS 1113 (1178)
Q Consensus 1046 ~~~I~~l-----~~spdg~~L~sgs~Dg----~I~iwd~~~-~~~~~~~~~~~h~~~i~~i--s~dg~~Lasgs~Dg~I~ 1113 (1178)
.+.+.+. .|++++.++++++.|+ .|++||+++ +.......+..+.+.+... .++|.++++|+.|++|+
T Consensus 209 ~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr 288 (568)
T PTZ00420 209 DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCR 288 (568)
T ss_pred cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEE
Confidence 8765433 3458899999988774 799999985 3323333344444444333 45688999999999999
Q ss_pred EEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCC
Q 001042 1114 LFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERK 1158 (1178)
Q Consensus 1114 iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~ 1158 (1178)
+|++..+.+ ..+... .+..++.+++|.|+..
T Consensus 289 ~~e~~~~~~-------------~~l~~~-~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 289 YYQHSLGSI-------------RKVNEY-KSCSPFRSFGFLPKQI 319 (568)
T ss_pred EEEccCCcE-------------Eeeccc-ccCCCccceEEccccc
Confidence 999974311 112222 3566788888988653
No 109
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=5.6e-23 Score=213.56 Aligned_cols=241 Identities=21% Similarity=0.373 Sum_probs=204.1
Q ss_pred ceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEEe--cCC--C
Q 001042 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAIN--SDR--G 894 (1178)
Q Consensus 819 ~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s--~d~--~ 894 (1178)
++..+..|.++|++++.+ +.++||||.|-+|+|||+. .......+-.|.+.|+++. ++- +
T Consensus 35 ~lF~~~aH~~sitavAVs--------------~~~~aSGssDetI~IYDm~--k~~qlg~ll~HagsitaL~F~~~~S~s 98 (362)
T KOG0294|consen 35 PLFAFSAHAGSITALAVS--------------GPYVASGSSDETIHIYDMR--KRKQLGILLSHAGSITALKFYPPLSKS 98 (362)
T ss_pred ccccccccccceeEEEec--------------ceeEeccCCCCcEEEEecc--chhhhcceeccccceEEEEecCCcchh
Confidence 466788999999999985 9999999999999999976 4555677888999999863 332 3
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEeC-CCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEe
Q 001042 895 KVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLS-GERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYD 973 (1178)
Q Consensus 895 ~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~~-~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~s 973 (1178)
.|++|+.||.|.+|+....+++..+++|.+.|+.++.++ +..-++.+.|+.++.||+-+|+.-....- ....+.+.|+
T Consensus 99 hLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~ 177 (362)
T KOG0294|consen 99 HLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWS 177 (362)
T ss_pred heeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEc
Confidence 799999999999999999999999999999999999995 55566889999999999999876554432 2334559999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEE-cCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEE
Q 001042 974 DSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM-DRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCV 1052 (1178)
Q Consensus 974 p~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l 1052 (1178)
|.|.+++.++.+ .|-+|.+.+......+... ..+.|+.| +++.+++|.+|+.|.+||..++.+...+.+|...|.++
T Consensus 178 ~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~-~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i 255 (362)
T KOG0294|consen 178 PQGDHFVVSGRN-KIDIYQLDNASVFREIENP-KRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDI 255 (362)
T ss_pred CCCCEEEEEecc-EEEEEecccHhHhhhhhcc-ccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeee
Confidence 999999888765 5889998887766555333 55777777 77899999999999999999999999999999999999
Q ss_pred EE--ecCCCEEEEEeCCCcEEEEECCCC
Q 001042 1053 EY--SSSDRGIITGSSDGLLRFWENDDG 1078 (1178)
Q Consensus 1053 ~~--spdg~~L~sgs~Dg~I~iwd~~~~ 1078 (1178)
.+ .|++.+|+++|+||.|++||++..
T Consensus 256 ~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 256 ASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred EEEecCCceEEEEeccCceEEEEEcccc
Confidence 84 567889999999999999999865
No 110
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=6.4e-24 Score=231.07 Aligned_cols=284 Identities=19% Similarity=0.308 Sum_probs=234.1
Q ss_pred CcccccCCcceEEEEecCCCCcccccccc-eeecccccccCCCCCCCCCCCcCCcccccceEEec--ccccceEEEEeee
Q 001042 761 PAEASGIGRSWVQSMFSREASSRSHSFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIR--GHAGAITALHCVT 837 (1178)
Q Consensus 761 ~~~~~gh~~~i~~~aFSpdg~~las~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--gH~~~V~~l~fs~ 837 (1178)
.+.+..|+.-|.+++.|...+++.+|+.. |+|||+..... .. ++..|. ....-|.++..+
T Consensus 412 q~~tL~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~-k~---------------PvsqLdcl~rdnyiRSckL~- 474 (705)
T KOG0639|consen 412 QINTLAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGN-KS---------------PVSQLDCLNRDNYIRSCKLL- 474 (705)
T ss_pred hhhhhccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCC-CC---------------ccccccccCcccceeeeEec-
Confidence 34556777666666999999999999999 99999985431 00 122221 123345555554
Q ss_pred ccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceE--EEecCCCEEEEEeCCCcEEEEECCCCcE
Q 001042 838 KREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKVVSGSDDQSVLVWDKQTSQL 915 (1178)
Q Consensus 838 ~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~--~~s~d~~~l~sgs~dg~I~iwd~~t~~~ 915 (1178)
+||+.|++|+.-.++.|||+......+...+......+. +++||.+..++++.||.|.|||+.+...
T Consensus 475 -----------pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~ 543 (705)
T KOG0639|consen 475 -----------PDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTL 543 (705)
T ss_pred -----------CCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccccee
Confidence 999999999999999999988655555555554333444 5699999999999999999999999999
Q ss_pred EEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 001042 916 LEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIR 994 (1178)
Q Consensus 916 ~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~ 994 (1178)
++.+++|.+.+.||..+ +|..|.+|+-|++|+.||+++++.+... ...+.|.++.++|++.++++|-.++.+.+....
T Consensus 544 VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqh-dF~SQIfSLg~cP~~dWlavGMens~vevlh~s 622 (705)
T KOG0639|consen 544 VRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQH-DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS 622 (705)
T ss_pred eecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhh-hhhhhheecccCCCccceeeecccCcEEEEecC
Confidence 99999999999999999 8999999999999999999999877654 346789999999999999999999999888765
Q ss_pred CCceEEEEecCCccEEEEEE--cCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEE
Q 001042 995 AGRQMHKFLGHTKWIRSIRM--DRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRF 1072 (1178)
Q Consensus 995 ~~~~~~~~~~~~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~i 1072 (1178)
. .....+..|...|.++.| .|.++++.+.|.-+..|...-|..+...+ ..+.|.++.+|.|.++++||+.|....+
T Consensus 623 k-p~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATV 700 (705)
T KOG0639|consen 623 K-PEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATV 700 (705)
T ss_pred C-ccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEE
Confidence 4 344556678999999998 68899999999999999999898877766 4678999999999999999999999888
Q ss_pred EEC
Q 001042 1073 WEN 1075 (1178)
Q Consensus 1073 wd~ 1075 (1178)
|.+
T Consensus 701 YeV 703 (705)
T KOG0639|consen 701 YEV 703 (705)
T ss_pred EEE
Confidence 875
No 111
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.3e-21 Score=204.86 Aligned_cols=281 Identities=16% Similarity=0.316 Sum_probs=226.4
Q ss_pred eEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccc--eEEEecCCCEEE
Q 001042 820 IRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRT--VRAINSDRGKVV 897 (1178)
Q Consensus 820 ~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~--V~~~s~d~~~l~ 897 (1178)
.+.+..-.+.|+++.|+ .+|.++++++.|.+++|||.. .+....++..+.-. +.++......++
T Consensus 7 ak~f~~~~~~i~sl~fs------------~~G~~litss~dDsl~LYd~~--~g~~~~ti~skkyG~~~~~Fth~~~~~i 72 (311)
T KOG1446|consen 7 AKVFRETNGKINSLDFS------------DDGLLLITSSEDDSLRLYDSL--SGKQVKTINSKKYGVDLACFTHHSNTVI 72 (311)
T ss_pred ccccccCCCceeEEEec------------CCCCEEEEecCCCeEEEEEcC--CCceeeEeecccccccEEEEecCCceEE
Confidence 44566677889999998 899999999999999999976 45555666655433 446655555555
Q ss_pred EEeC--CCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeC
Q 001042 898 SGSD--DQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDD 974 (1178)
Q Consensus 898 sgs~--dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp 974 (1178)
.++. |.+|+..++.+.+.++.+.||...|+.++.+ -++.+++++.|++|++||++..++...+..... ..++|+|
T Consensus 73 ~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp 150 (311)
T KOG1446|consen 73 HSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDP 150 (311)
T ss_pred EccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECC
Confidence 5555 8899999999999999999999999999999 478999999999999999998888777644333 4579999
Q ss_pred CCCEEEEEeCCCeEEEEECCCC--ceEEEEe---cCCccEEEEEE--cCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCC
Q 001042 975 STGILAAGGRDAVANIWDIRAG--RQMHKFL---GHTKWIRSIRM--DRDTVITGSDDWTARMWSISRGTCDAVLACHAG 1047 (1178)
Q Consensus 975 ~~~~l~sgs~dg~I~lwD~~~~--~~~~~~~---~~~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~ 1047 (1178)
+|-++|++...+.|++||++.- .+..++. +.....+.+.| +|..++.+...+.+++.|.-+|..+.++..+..
T Consensus 151 ~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~ 230 (311)
T KOG1446|consen 151 EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPN 230 (311)
T ss_pred CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccC
Confidence 9999999998889999999964 3334433 33567788888 566999999999999999999999999887755
Q ss_pred cE---EEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecc-cCCcEEEEecCCCEEEEEeCCCcEEEEEcC
Q 001042 1048 PV---QCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTI-HSSAILSINAGDHWLGIGAADNSMSLFHRP 1118 (1178)
Q Consensus 1048 ~I---~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~-h~~~i~~is~dg~~Lasgs~Dg~I~iwd~~ 1118 (1178)
.- ...+|+||++++++|+.||+|.+|++++| ..+..+.+ +...+.++..+.++...++.+..+.+|-..
T Consensus 231 ~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg--~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p~ 303 (311)
T KOG1446|consen 231 AGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETG--KKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFWLPD 303 (311)
T ss_pred CCCcceeEEECCCCcEEEEecCCCcEEEEEcCCC--cEeeEecCCCCCCccccccCCceeeeeecCceEEEEecc
Confidence 43 57789999999999999999999999999 55666666 677777776666666666667889999765
No 112
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.91 E-value=1.3e-22 Score=242.15 Aligned_cols=273 Identities=18% Similarity=0.298 Sum_probs=225.8
Q ss_pred EEecCCCEEEEEe--CCCcEEEEECCC------------CcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCC
Q 001042 888 AINSDRGKVVSGS--DDQSVLVWDKQT------------SQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVR 952 (1178)
Q Consensus 888 ~~s~d~~~l~sgs--~dg~I~iwd~~t------------~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~ 952 (1178)
+++|||..+++|+ .||.++||+.+. .+.+.....|.+.|+|+.|+ +|.++|+|+.|+.|.+|+..
T Consensus 20 dv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~ 99 (942)
T KOG0973|consen 20 DVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERA 99 (942)
T ss_pred EecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeec
Confidence 4589999999999 999999998642 23455677899999999999 89999999999999999976
Q ss_pred C------------------CeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEE
Q 001042 953 T------------------DTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM 1014 (1178)
Q Consensus 953 ~------------------~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~ 1014 (1178)
. .+++..+.+|...|..++|+|++.++++++.|++|.+||.++.+.+..+.+|.+.|..+.|
T Consensus 100 ~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~ 179 (942)
T KOG0973|consen 100 EIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSW 179 (942)
T ss_pred ccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEE
Confidence 2 1366778899999999999999999999999999999999999999999999999999999
Q ss_pred cC--CEEEEEeCCCcEEEEEcCCCeeeeEeccCC------CcEEEEEEecCCCEEEEEe----CCCcEEEEECCCCceEE
Q 001042 1015 DR--DTVITGSDDWTARMWSISRGTCDAVLACHA------GPVQCVEYSSSDRGIITGS----SDGLLRFWENDDGGIKC 1082 (1178)
Q Consensus 1015 ~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~------~~I~~l~~spdg~~L~sgs----~Dg~I~iwd~~~~~~~~ 1082 (1178)
|| .++++-+.|++|++|++.+....+.+.++- ..+..+.|||||.+|++.. .-.++.|.+-.+ +..
T Consensus 180 DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~t--Wk~ 257 (942)
T KOG0973|consen 180 DPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGT--WKV 257 (942)
T ss_pred CCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCC--cee
Confidence 75 599999999999999988877777766542 3578999999999999864 234577877644 477
Q ss_pred EEEecccCCcEEEE--ec------C-------CC----EEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCC
Q 001042 1083 VKNVTIHSSAILSI--NA------G-------DH----WLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQK 1143 (1178)
Q Consensus 1083 ~~~~~~h~~~i~~i--s~------d-------g~----~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~ 1143 (1178)
-..+-||..++.++ +| . +. .+|+||.|++|.||.....+. +.....-
T Consensus 258 ~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RP--------------l~vi~~l 323 (942)
T KOG0973|consen 258 DKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRP--------------LFVIHNL 323 (942)
T ss_pred eeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCc--------------hhhhhhh
Confidence 78889999998776 22 1 11 688999999999999754321 1111122
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001042 1144 TVAVVRCIASDLERKRICSGGRNGLLRLWEATI 1176 (1178)
Q Consensus 1144 h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~t 1176 (1178)
....|.+++|+|||-.|..+|.||+|.+.+++.
T Consensus 324 f~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 324 FNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred hcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 345799999999999999999999999998764
No 113
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.91 E-value=6.7e-23 Score=224.53 Aligned_cols=287 Identities=22% Similarity=0.310 Sum_probs=223.4
Q ss_pred ceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCC-----ceeeEeecccccceEEEecCC
Q 001042 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRG-----SELRATLKGHTRTVRAINSDR 893 (1178)
Q Consensus 819 ~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~-----~~~~~~l~~h~~~V~~~s~d~ 893 (1178)
.--.+.+|+..|.++++- |.|..++|||.|.+|++||+..-. ...+....+|......+++.|
T Consensus 159 hEi~l~hgtk~Vsal~~D------------p~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg 226 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVD------------PSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTG 226 (641)
T ss_pred ceEeccCCceEEEEeeec------------CCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCC
Confidence 345688999999999986 899999999999999999976221 223344456777777889999
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEE------------EecCCCCceEEEEEe--CCCeEEEEeCCCeEEEEeCCCCeE-EE
Q 001042 894 GKVVSGSDDQSVLVWDKQTSQLLE------------ELKGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTDTC-VA 958 (1178)
Q Consensus 894 ~~l~sgs~dg~I~iwd~~t~~~~~------------~l~~h~~~V~~l~~~--~~~~l~sgs~dg~V~iwd~~~~~~-~~ 958 (1178)
..|++.+.....+++|-...+... .-+||...++|.+|+ +...+++++.||++++||+...+. .+
T Consensus 227 ~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~q 306 (641)
T KOG0772|consen 227 DQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQ 306 (641)
T ss_pred CeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhee
Confidence 999999999999999965433332 235899999999999 466799999999999999976532 22
Q ss_pred Ee-----cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce---EEEEecCCc--cEEEEEE--cCCEEEEEeCCC
Q 001042 959 TV-----GRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQ---MHKFLGHTK--WIRSIRM--DRDTVITGSDDW 1026 (1178)
Q Consensus 959 ~~-----~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~---~~~~~~~~~--~v~~l~~--~~~~l~sgs~dg 1026 (1178)
.+ .+..-.+++++|+++|+.||+|..||.|.+||..+... ...-..|.. .|+||+| ++++|++-+.|+
T Consensus 307 Vik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~ 386 (641)
T KOG0772|consen 307 VIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDD 386 (641)
T ss_pred EEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCC
Confidence 22 22345789999999999999999999999999865332 233346766 8999999 677999999999
Q ss_pred cEEEEEcCCC-eeeeEeccC--CCcEEEEEEecCCCEEEEEeC------CCcEEEEECCCCceEEEEEecccCCcEEEE-
Q 001042 1027 TARMWSISRG-TCDAVLACH--AGPVQCVEYSSSDRGIITGSS------DGLLRFWENDDGGIKCVKNVTIHSSAILSI- 1096 (1178)
Q Consensus 1027 ~I~iwd~~~~-~~~~~~~~h--~~~I~~l~~spdg~~L~sgs~------Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i- 1096 (1178)
++++||++.. +++.+..+- .-+-+.++|||+.+.|++|++ .|++.+||..+- ..+..+......|..+
T Consensus 387 tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~--d~v~ki~i~~aSvv~~~ 464 (641)
T KOG0772|consen 387 TLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTL--DTVYKIDISTASVVRCL 464 (641)
T ss_pred ceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccce--eeEEEecCCCceEEEEe
Confidence 9999999874 455555432 335678999999999999863 577999998876 5566665556666544
Q ss_pred -ecCCCEEEEEeCCCcEEEEEcCC
Q 001042 1097 -NAGDHWLGIGAADNSMSLFHRPQ 1119 (1178)
Q Consensus 1097 -s~dg~~Lasgs~Dg~I~iwd~~~ 1119 (1178)
+|.-+.|.+|+.||++++|--++
T Consensus 465 WhpkLNQi~~gsgdG~~~vyYdp~ 488 (641)
T KOG0772|consen 465 WHPKLNQIFAGSGDGTAHVYYDPN 488 (641)
T ss_pred ecchhhheeeecCCCceEEEECcc
Confidence 67778899999999999986543
No 114
>PTZ00421 coronin; Provisional
Probab=99.91 E-value=6e-22 Score=235.51 Aligned_cols=231 Identities=21% Similarity=0.327 Sum_probs=183.6
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCcEE-------------EEecCCCCceEEEEEe--CCCeEEEEeCCCeEEEEeCCC
Q 001042 889 INSDRGKVVSGSDDQSVLVWDKQTSQLL-------------EELKGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRT 953 (1178)
Q Consensus 889 ~s~d~~~l~sgs~dg~I~iwd~~t~~~~-------------~~l~~h~~~V~~l~~~--~~~~l~sgs~dg~V~iwd~~~ 953 (1178)
.++++..+++++.+.....|+...+..+ ..+.+|.+.|++++|+ +++.+++|+.||+|++||+.+
T Consensus 28 ~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~ 107 (493)
T PTZ00421 28 ALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPE 107 (493)
T ss_pred ccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCC
Confidence 4556556666666666666654433221 2467899999999998 467899999999999999976
Q ss_pred C-------eEEEEecCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEc--CCEEEEEe
Q 001042 954 D-------TCVATVGRCSSAVLCMEYDDST-GILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMD--RDTVITGS 1023 (1178)
Q Consensus 954 ~-------~~~~~~~~~~~~I~~l~~sp~~-~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sgs 1023 (1178)
+ ..+..+.+|...|.+++|+|++ ++|++|+.|+.|++||+++++.+..+.+|...|.+++|+ ++.+++++
T Consensus 108 ~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs 187 (493)
T PTZ00421 108 EGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTS 187 (493)
T ss_pred CccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEec
Confidence 5 3467788999999999999975 689999999999999999999999999999999999995 56999999
Q ss_pred CCCcEEEEEcCCCeeeeEeccCCCc-EEEEEEecCCCEEEEEe----CCCcEEEEECCCCceEEEEEecccCC-cE--EE
Q 001042 1024 DDWTARMWSISRGTCDAVLACHAGP-VQCVEYSSSDRGIITGS----SDGLLRFWENDDGGIKCVKNVTIHSS-AI--LS 1095 (1178)
Q Consensus 1024 ~dg~I~iwd~~~~~~~~~~~~h~~~-I~~l~~spdg~~L~sgs----~Dg~I~iwd~~~~~~~~~~~~~~h~~-~i--~~ 1095 (1178)
.||+|++||+++++.+..+.+|.+. +..+.|.+++..+++++ .|+.|++||+++.. ........+.. .+ ..
T Consensus 188 ~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~-~p~~~~~~d~~~~~~~~~ 266 (493)
T PTZ00421 188 KDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA-SPYSTVDLDQSSALFIPF 266 (493)
T ss_pred CCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC-CceeEeccCCCCceEEEE
Confidence 9999999999999999999888765 45778999888887764 47899999998753 22333332322 22 23
Q ss_pred EecCCCEEEEEe-CCCcEEEEEcCCC
Q 001042 1096 INAGDHWLGIGA-ADNSMSLFHRPQE 1120 (1178)
Q Consensus 1096 is~dg~~Lasgs-~Dg~I~iwd~~~~ 1120 (1178)
++++++++++|+ .|+.|++||+.++
T Consensus 267 ~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 267 FDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred EcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 478999999887 5999999999854
No 115
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.8e-21 Score=219.14 Aligned_cols=283 Identities=17% Similarity=0.289 Sum_probs=231.0
Q ss_pred ecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccc-eEEEec-CCCEEEEEe
Q 001042 823 IRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRT-VRAINS-DRGKVVSGS 900 (1178)
Q Consensus 823 l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~-V~~~s~-d~~~l~sgs 900 (1178)
+.--..+|+++||+ .+.+.||.+-.||.|.+|++. .+.-....+.++... |-++.. ++..|++.+
T Consensus 21 ~d~~Ps~I~slA~s------------~kS~~lAvsRt~g~IEiwN~~-~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g 87 (691)
T KOG2048|consen 21 VDYKPSEIVSLAYS------------HKSNQLAVSRTDGNIEIWNLS-NNWFLEPVIHGPEDRSIESLAWAEGGRLFSSG 87 (691)
T ss_pred EeeeccceEEEEEe------------ccCCceeeeccCCcEEEEccC-CCceeeEEEecCCCCceeeEEEccCCeEEeec
Confidence 34456789999988 778889999999999999998 566666777776554 334322 588899999
Q ss_pred CCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEE--EecCCCCCEEEEEEeCCCC
Q 001042 901 DDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVA--TVGRCSSAVLCMEYDDSTG 977 (1178)
Q Consensus 901 ~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~--~~~~~~~~I~~l~~sp~~~ 977 (1178)
.+|.|.-||+.+++....+....+.|++++.+ .++.++.|+.||.+...+...++... .+...++.+.+++|+|++.
T Consensus 88 ~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~ 167 (691)
T KOG2048|consen 88 LSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGT 167 (691)
T ss_pred CCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCcc
Confidence 99999999999999999999999999999999 57788899999988888887776543 3455678999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEEe-------c-CCccEEEEEE-cCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCc
Q 001042 978 ILAAGGRDAVANIWDIRAGRQMHKFL-------G-HTKWIRSIRM-DRDTVITGSDDWTARMWSISRGTCDAVLACHAGP 1048 (1178)
Q Consensus 978 ~l~sgs~dg~I~lwD~~~~~~~~~~~-------~-~~~~v~~l~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~ 1048 (1178)
.+++|+.||.|++||..++..++... . ...-|+++.+ ..+.+++|...|+|.+||...++.++.+..|.+.
T Consensus 168 ~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~ad 247 (691)
T KOG2048|consen 168 KIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDAD 247 (691)
T ss_pred EEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcc
Confidence 99999999999999999988766221 1 2335667766 6779999999999999999999999999999999
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEECCCCce--EEEEEecccCCcEEEEecCCCEEEEEeCCCcEEEEEcC
Q 001042 1049 VQCVEYSSSDRGIITGSSDGLLRFWENDDGGI--KCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRP 1118 (1178)
Q Consensus 1049 I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~--~~~~~~~~h~~~i~~is~dg~~Lasgs~Dg~I~iwd~~ 1118 (1178)
|.+++..+++.+++++|.|+.|..+...+++. ........|...+.++.--+..+++|+.|.++.+-...
T Consensus 248 Vl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~ 319 (691)
T KOG2048|consen 248 VLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSR 319 (691)
T ss_pred eeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecceEEecceeeEEEEcccc
Confidence 99999999999999999999999998876632 23334456777776665545588888888888776543
No 116
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=1.9e-22 Score=208.53 Aligned_cols=267 Identities=22% Similarity=0.346 Sum_probs=211.2
Q ss_pred ecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEE--EecCCCEEEEEe
Q 001042 823 IRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGS 900 (1178)
Q Consensus 823 l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~--~s~d~~~l~sgs 900 (1178)
-..-++.|.+|+||| ....++++||.||+||+|+++..+...-+....|.++|.+ |+.||..+++|+
T Consensus 23 ~~pP~DsIS~l~FSP-----------~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~ 91 (347)
T KOG0647|consen 23 PNPPEDSISALAFSP-----------QADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGG 91 (347)
T ss_pred CCCcccchheeEecc-----------ccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeec
Confidence 344678899999984 3677888999999999999985545444667789999984 689999999999
Q ss_pred CCCcEEEEECCCCcEEEEecCCCCceEEEEEeC---CCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCC
Q 001042 901 DDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLS---GERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTG 977 (1178)
Q Consensus 901 ~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~~---~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~ 977 (1178)
.|+.+++||+.+++. ..+..|.++|.++.|-. -..|++|+.|.+|+.||.+...++.++.- .+.+.++.. ...
T Consensus 92 ~Dk~~k~wDL~S~Q~-~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv--~~p 167 (347)
T KOG0647|consen 92 CDKQAKLWDLASGQV-SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADV--LYP 167 (347)
T ss_pred cCCceEEEEccCCCe-eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-cceeeehhc--cCc
Confidence 999999999999955 56778999999999983 23689999999999999999998888754 445555544 455
Q ss_pred EEEEEeCCCeEEEEECCCCceEEE-Eec-CCccEEEEEE--cCCEEEEEeCCCcEEEEEcCCC--eeeeEeccCCC----
Q 001042 978 ILAAGGRDAVANIWDIRAGRQMHK-FLG-HTKWIRSIRM--DRDTVITGSDDWTARMWSISRG--TCDAVLACHAG---- 1047 (1178)
Q Consensus 978 ~l~sgs~dg~I~lwD~~~~~~~~~-~~~-~~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~--~~~~~~~~h~~---- 1047 (1178)
.++++..+..|.+|+++++..... ... ..-.+.|++. +.+..+.|+-+|.+.+..+..+ +.-.++++|..
T Consensus 168 m~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~ 247 (347)
T KOG0647|consen 168 MAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSV 247 (347)
T ss_pred eeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCC
Confidence 788888999999999987644322 111 2235677776 5667799999999999998876 55566777763
Q ss_pred -----cEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEE--EecCCCEEEEE
Q 001042 1048 -----PVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILS--INAGDHWLGIG 1106 (1178)
Q Consensus 1048 -----~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~--is~dg~~Lasg 1106 (1178)
.|++++|+|....|+|+|.||+..+||-+.. ..++..+.|..+|.+ ++.+|.++|-+
T Consensus 248 ~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar--~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 248 NDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR--TKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred CCceEEecceEeecccceEEEecCCceEEEecchhh--hhhhccCcCCCccceeEecCCCCEEEEE
Confidence 5788999999999999999999999998766 556666778777755 46778877765
No 117
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=3.6e-22 Score=207.11 Aligned_cols=295 Identities=17% Similarity=0.253 Sum_probs=211.6
Q ss_pred ceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCc----eeeEeecccccceEEEecCCC
Q 001042 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGS----ELRATLKGHTRTVRAINSDRG 894 (1178)
Q Consensus 819 ~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~----~~~~~l~~h~~~V~~~s~d~~ 894 (1178)
.+.+|+||.+.|++++|+ .||+.|||++.|++|++|++..-.. .+...++........|+||.+
T Consensus 78 ~~~~LKgH~~~vt~~~Fs------------SdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~ 145 (420)
T KOG2096|consen 78 NVSVLKGHKKEVTDVAFS------------SDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCK 145 (420)
T ss_pred hhhhhhccCCceeeeEEc------------CCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcc
Confidence 456789999999999998 8999999999999999999762111 112222222233346888877
Q ss_pred EEEEE-eCCCcEEEEECCC---CcEEEE---------ecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEe
Q 001042 895 KVVSG-SDDQSVLVWDKQT---SQLLEE---------LKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATV 960 (1178)
Q Consensus 895 ~l~sg-s~dg~I~iwd~~t---~~~~~~---------l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~ 960 (1178)
-++.. -...++++|.+.. |..... -+.|...+..+-.. ++.++++++.|..|.+|+++ |+.+..+
T Consensus 146 s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~i 224 (420)
T KOG2096|consen 146 SVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSI 224 (420)
T ss_pred eEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeee
Confidence 65544 4556899997643 211111 12345555555555 56788999999999999998 9999998
Q ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEcCCEEEEEeCCCcEEEEEcCCCeeee
Q 001042 961 GRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDA 1040 (1178)
Q Consensus 961 ~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~ 1040 (1178)
......-+..+.||+|+++++++-.-.+++|.+- -..||++ ..-..+.
T Consensus 225 dtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~---------------------------f~kdG~f-----qev~rvf 272 (420)
T KOG2096|consen 225 DTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPI---------------------------FTKDGTF-----QEVKRVF 272 (420)
T ss_pred ccccccccceeeCCCCcEEEEecCCCCceEEEEE---------------------------eccCcch-----hhhhhhh
Confidence 8777777889999999999999988889999741 1134433 1223456
Q ss_pred EeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCC-----ceEEEEEe--cc---cCCc-EEEEecCCCEEEEEeCC
Q 001042 1041 VLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDG-----GIKCVKNV--TI---HSSA-ILSINAGDHWLGIGAAD 1109 (1178)
Q Consensus 1041 ~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~-----~~~~~~~~--~~---h~~~-i~~is~dg~~Lasgs~D 1109 (1178)
.+++|.+.|..++|+++...+++.|.||++++||.+-. ....++.. .. ...+ -.+++|+|+.||.+. .
T Consensus 273 ~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-g 351 (420)
T KOG2096|consen 273 SLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-G 351 (420)
T ss_pred eeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-C
Confidence 78899999999999999999999999999999998632 11112211 11 1222 256799999998764 4
Q ss_pred CcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001042 1110 NSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEA 1174 (1178)
Q Consensus 1110 g~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv 1174 (1178)
.+++++..+++ ... ...-..|...|++++|+++|+++||+| |..+++..-
T Consensus 352 s~l~~~~se~g---------~~~-----~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~n 401 (420)
T KOG2096|consen 352 SDLKVFASEDG---------KDY-----PELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIRN 401 (420)
T ss_pred CceEEEEcccC---------ccc-----hhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeecC
Confidence 67999998743 221 122346889999999999999999997 778888763
No 118
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.4e-21 Score=191.53 Aligned_cols=304 Identities=22% Similarity=0.318 Sum_probs=239.6
Q ss_pred ceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEE
Q 001042 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVS 898 (1178)
Q Consensus 819 ~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~s 898 (1178)
.+.++. .+.+|.+++|+ |.|.+.|+|+...+.+|-... .++..-.+|..++. |
T Consensus 25 ~i~~l~-dsqairav~fh------------p~g~lyavgsnskt~ric~yp----~l~~~r~~hea~~~---p------- 77 (350)
T KOG0641|consen 25 AINILE-DSQAIRAVAFH------------PAGGLYAVGSNSKTFRICAYP----ALIDLRHAHEAAKQ---P------- 77 (350)
T ss_pred EEEEec-chhheeeEEec------------CCCceEEeccCCceEEEEccc----cccCcccccccccC---C-------
Confidence 344443 45678888887 899999999999999987632 12222234443321 0
Q ss_pred EeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEE-----EEecCCCCCEEEEEE
Q 001042 899 GSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCV-----ATVGRCSSAVLCMEY 972 (1178)
Q Consensus 899 gs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~-----~~~~~~~~~I~~l~~ 972 (1178)
..| ..+.-+.|.+.|.|.+|+ .|..+++|+.|.+|++.-.+...+. ..+.-|.+.|..++|
T Consensus 78 ----p~v---------~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~f 144 (350)
T KOG0641|consen 78 ----PSV---------LCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAF 144 (350)
T ss_pred ----CeE---------EeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEE
Confidence 001 123345689999999999 7899999999999999876654332 345668899999999
Q ss_pred eC----CCCEEEEEe-CCCeEEEEECCCCceEEEEecCCccEEEE-EEcCCEEEEEeCCCcEEEEEcCCCeeeeEecc--
Q 001042 973 DD----STGILAAGG-RDAVANIWDIRAGRQMHKFLGHTKWIRSI-RMDRDTVITGSDDWTARMWSISRGTCDAVLAC-- 1044 (1178)
Q Consensus 973 sp----~~~~l~sgs-~dg~I~lwD~~~~~~~~~~~~~~~~v~~l-~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-- 1044 (1178)
-. .+..|++++ .|..|++-|..+|+..+.+.+|.+.|.++ .|++-++++|+.|.+|++||++-..++.++..
T Consensus 145 ld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~ 224 (350)
T KOG0641|consen 145 LDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDF 224 (350)
T ss_pred ecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcc
Confidence 65 345677665 57889999999999999999999999887 67999999999999999999999888887652
Q ss_pred C-----CCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE--ecCCCEEEEEeCCCcEEEEEc
Q 001042 1045 H-----AGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHR 1117 (1178)
Q Consensus 1045 h-----~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~dg~~Lasgs~Dg~I~iwd~ 1117 (1178)
| .+.|.+++..|.|+.|++|..|....+||++.+ ..++.+..|+..|.++ +|...++.+++.|..|++-|+
T Consensus 225 ~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~--r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdl 302 (350)
T KOG0641|consen 225 HDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGG--RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDL 302 (350)
T ss_pred cCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCC--ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeec
Confidence 2 357999999999999999999999999999998 7889999999999887 899999999999999999999
Q ss_pred CCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001042 1118 PQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEAT 1175 (1178)
Q Consensus 1118 ~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~ 1175 (1178)
+.... .+ -.......|.+.+..+.|+|..-.+++.+.|.++.+|-+.
T Consensus 303 qgdla-------~e----l~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 303 QGDLA-------HE----LPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ccchh-------hc----CceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 73210 01 1122344688888899999999889999999999999764
No 119
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=5e-22 Score=206.52 Aligned_cols=261 Identities=14% Similarity=0.280 Sum_probs=215.9
Q ss_pred EEEEeCCCcEEEEcCCCCC----------ceeeEeecccccceEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCC
Q 001042 854 FISGSTDCLVKIWDPSLRG----------SELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHD 923 (1178)
Q Consensus 854 Lasgs~Dg~I~iWd~~~~~----------~~~~~~l~~h~~~V~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~ 923 (1178)
+++|+....|.-+++.... ......+..|.+.++++.-++.++++|+.|-+|+|||+.+...+..+-.|.
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~Ha 83 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHA 83 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEecceeEeccCCCCcEEEEeccchhhhcceeccc
Confidence 5677777766666554221 112456678999999999999999999999999999999999999999999
Q ss_pred CceEEEEEeCC---CeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEE
Q 001042 924 AQVSCVRMLSG---ERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMH 1000 (1178)
Q Consensus 924 ~~V~~l~~~~~---~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~ 1000 (1178)
+.|+++.|... +.|++|+.||.|.+|+.....++.+++.|.+.|+.++.+|.+++-++.+.|+.+++||+-+|+.-.
T Consensus 84 gsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~ 163 (362)
T KOG0294|consen 84 GSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAF 163 (362)
T ss_pred cceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccce
Confidence 99999999832 389999999999999999999999999999999999999999999999999999999999887655
Q ss_pred EEecCCccEEEEEE--cCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 001042 1001 KFLGHTKWIRSIRM--DRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDG 1078 (1178)
Q Consensus 1001 ~~~~~~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~ 1078 (1178)
...-. ...+.+.| .|++++.++.+ .|-+|.+.+......+.. ...+.++.|. ++..+++|+.|+.|.+||.+++
T Consensus 164 v~~L~-~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~ 239 (362)
T KOG0294|consen 164 VLNLK-NKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIEN-PKRILCATFL-DGSELLVGGDNEWISLKDTDSD 239 (362)
T ss_pred eeccC-CcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhc-cccceeeeec-CCceEEEecCCceEEEeccCCC
Confidence 54322 22233777 45678888776 588999888766655543 3457777776 4678999999999999999986
Q ss_pred ceEEEEEecccCCcEEEE----ecCCCEEEEEeCCCcEEEEEcCCC
Q 001042 1079 GIKCVKNVTIHSSAILSI----NAGDHWLGIGAADNSMSLFHRPQE 1120 (1178)
Q Consensus 1079 ~~~~~~~~~~h~~~i~~i----s~dg~~Lasgs~Dg~I~iwd~~~~ 1120 (1178)
.+...+.+|..+|-++ .+++.+|+++|.||.|++||+...
T Consensus 240 --~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 240 --TPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred --ccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 7888899999999887 477889999999999999999743
No 120
>PTZ00420 coronin; Provisional
Probab=99.90 E-value=1.8e-21 Score=232.00 Aligned_cols=223 Identities=13% Similarity=0.199 Sum_probs=179.9
Q ss_pred EeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCc--------eEEEEecCCccEE
Q 001042 940 ASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDS-TGILAAGGRDAVANIWDIRAGR--------QMHKFLGHTKWIR 1010 (1178)
Q Consensus 940 gs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~-~~~l~sgs~dg~I~lwD~~~~~--------~~~~~~~~~~~v~ 1010 (1178)
|+.+|.|++|+......+..+.+|...|.+++|+|+ +.+|++|+.||.|++||+.++. ++..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 667889999998888888889999999999999996 7899999999999999998642 3446788999999
Q ss_pred EEEEcCC---EEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEec
Q 001042 1011 SIRMDRD---TVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVT 1087 (1178)
Q Consensus 1011 ~l~~~~~---~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~ 1087 (1178)
+++|++. .+++++.||+|++||+++++....+. |...|.+++|+++|.+|++++.|+.|++||++++ ..+..+.
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg--~~i~tl~ 206 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ--EIASSFH 206 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCC--cEEEEEe
Confidence 9999764 56799999999999999998877776 6678999999999999999999999999999998 5667788
Q ss_pred ccCCcEEE-------EecCCCEEEEEeCCC----cEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCC
Q 001042 1088 IHSSAILS-------INAGDHWLGIGAADN----SMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLE 1156 (1178)
Q Consensus 1088 ~h~~~i~~-------is~dg~~Lasgs~Dg----~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspd 1156 (1178)
+|.+.+.+ +++++.++++++.|+ +|+|||+... +..+ .......+.+.+......++
T Consensus 207 gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~--------~~pl----~~~~ld~~~~~L~p~~D~~t 274 (568)
T PTZ00420 207 IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNT--------TSAL----VTMSIDNASAPLIPHYDEST 274 (568)
T ss_pred cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCC--------CCce----EEEEecCCccceEEeeeCCC
Confidence 88875422 247888999988774 7999998732 1111 11122334444444545667
Q ss_pred CCEEEEEeCCCcEEEEECCCC
Q 001042 1157 RKRICSGGRNGLLRLWEATIN 1177 (1178)
Q Consensus 1157 g~~Las~s~Dg~V~IWdv~tg 1177 (1178)
|.++++|+.|++|++|++.++
T Consensus 275 g~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 275 GLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred CCEEEEEECCCeEEEEEccCC
Confidence 999999999999999999765
No 121
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=3.2e-22 Score=233.59 Aligned_cols=243 Identities=16% Similarity=0.351 Sum_probs=193.2
Q ss_pred EEEEec-CCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCC--------------------------------C------
Q 001042 915 LLEELK-GHDAQVSCVRML-SGERVLTASHDGTVKMWDVRT--------------------------------D------ 954 (1178)
Q Consensus 915 ~~~~l~-~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~--------------------------------~------ 954 (1178)
..+.+. .|.+.|+++.|+ +|.+||+||.||.|+||.+.. .
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 344556 899999999999 999999999999999998754 0
Q ss_pred ----------------------eEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEE
Q 001042 955 ----------------------TCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSI 1012 (1178)
Q Consensus 955 ----------------------~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l 1012 (1178)
+++..+.+|.+.|..+.|+.++ +|++++.|.+|++|++...+++..| .|.+.|+|+
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcV 415 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCV 415 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEE-ecCCeeEEE
Confidence 1223346788899999999765 6889999999999999999999998 799999999
Q ss_pred EEc---CCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEeccc
Q 001042 1013 RMD---RDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIH 1089 (1178)
Q Consensus 1013 ~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h 1089 (1178)
+|+ .+++++|+-||.+|||++...+.+.-.. -..-|++++|.|||++.+.|+.+|.+++|+....+...-..+..|
T Consensus 416 aFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~ 494 (712)
T KOG0283|consen 416 AFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLH 494 (712)
T ss_pred EecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeec
Confidence 995 4699999999999999998776654444 347899999999999999999999999999987754433333322
Q ss_pred ------CCcEEEEe---cCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCc--ccEEEEEEcCCCC
Q 001042 1090 ------SSAILSIN---AGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTV--AVVRCIASDLERK 1158 (1178)
Q Consensus 1090 ------~~~i~~is---~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~--~~V~~lafspdg~ 1158 (1178)
...|+.+- .+...+++.+.|..|||+|.... +++..++|+. ..-....|+.||+
T Consensus 495 ~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~---------------~lv~KfKG~~n~~SQ~~Asfs~Dgk 559 (712)
T KOG0283|consen 495 NKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK---------------DLVHKFKGFRNTSSQISASFSSDGK 559 (712)
T ss_pred cCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch---------------hhhhhhcccccCCcceeeeEccCCC
Confidence 22677772 23346777889999999998533 3333444332 2234677999999
Q ss_pred EEEEEeCCCcEEEEECC
Q 001042 1159 RICSGGRNGLLRLWEAT 1175 (1178)
Q Consensus 1159 ~Las~s~Dg~V~IWdv~ 1175 (1178)
+|++|++|..|+||+.+
T Consensus 560 ~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 560 HIVSASEDSWVYIWKND 576 (712)
T ss_pred EEEEeecCceEEEEeCC
Confidence 99999999999999974
No 122
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.89 E-value=1e-21 Score=215.27 Aligned_cols=280 Identities=18% Similarity=0.254 Sum_probs=213.9
Q ss_pred EeecccccceEEE--ecCCCEEEEEeCCCcEEEEECCCCcE----EEEe-cCCCCceEEEEEe-CCCeEEEEeCCCeEEE
Q 001042 877 ATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQL----LEEL-KGHDAQVSCVRML-SGERVLTASHDGTVKM 948 (1178)
Q Consensus 877 ~~l~~h~~~V~~~--s~d~~~l~sgs~dg~I~iwd~~t~~~----~~~l-~~h~~~V~~l~~~-~~~~l~sgs~dg~V~i 948 (1178)
..+.+|+..|.++ .|.|..+++|+.|-+|++||+..... .+.+ ......|.++.|+ .++.|++.+.....++
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl 240 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL 240 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeE
Confidence 4677888888865 78999999999999999999875422 2222 2345679999999 7888998888899999
Q ss_pred EeCCCCeEEEE------------ecCCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCce-EEEEe-----cCCccE
Q 001042 949 WDVRTDTCVAT------------VGRCSSAVLCMEYDDS-TGILAAGGRDAVANIWDIRAGRQ-MHKFL-----GHTKWI 1009 (1178)
Q Consensus 949 wd~~~~~~~~~------------~~~~~~~I~~l~~sp~-~~~l~sgs~dg~I~lwD~~~~~~-~~~~~-----~~~~~v 1009 (1178)
+|-...+.... .++|...++|.+|+|+ ...+++++.||++++||+...+. ...++ +..-.+
T Consensus 241 ~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~ 320 (641)
T KOG0772|consen 241 LDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPV 320 (641)
T ss_pred EccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCc
Confidence 99654433322 2567888999999995 45788999999999999986543 22222 233477
Q ss_pred EEEEEc--CCEEEEEeCCCcEEEEEcCCCee---eeEeccCCC--cEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEE
Q 001042 1010 RSIRMD--RDTVITGSDDWTARMWSISRGTC---DAVLACHAG--PVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKC 1082 (1178)
Q Consensus 1010 ~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~---~~~~~~h~~--~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~ 1082 (1178)
++++|+ +..+|+|+.||+|.+|+..+... ...-.+|.. .|+|+.||+||++|++-|.|+++++||++..+ ++
T Consensus 321 tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k-kp 399 (641)
T KOG0772|consen 321 TSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK-KP 399 (641)
T ss_pred eeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc-cc
Confidence 888995 55999999999999999755322 233446776 89999999999999999999999999998764 44
Q ss_pred EEEecc----cCCcEEEEecCCCEEEEEeC------CCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEE
Q 001042 1083 VKNVTI----HSSAILSINAGDHWLGIGAA------DNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIA 1152 (1178)
Q Consensus 1083 ~~~~~~----h~~~i~~is~dg~~Lasgs~------Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~la 1152 (1178)
+....+ ....-.++||+.++|++|+. .|++.+||..+. +.+..+.-....|..+.
T Consensus 400 L~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~---------------d~v~ki~i~~aSvv~~~ 464 (641)
T KOG0772|consen 400 LNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTL---------------DTVYKIDISTASVVRCL 464 (641)
T ss_pred hhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccce---------------eeEEEecCCCceEEEEe
Confidence 443332 22334678999999999864 477889987632 44444444567799999
Q ss_pred EcCCCCEEEEEeCCCcEEEE
Q 001042 1153 SDLERKRICSGGRNGLLRLW 1172 (1178)
Q Consensus 1153 fspdg~~Las~s~Dg~V~IW 1172 (1178)
|+|.-+.|..|+.||+++|+
T Consensus 465 WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 465 WHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred ecchhhheeeecCCCceEEE
Confidence 99999999999999999986
No 123
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=2.8e-21 Score=199.92 Aligned_cols=261 Identities=17% Similarity=0.269 Sum_probs=209.7
Q ss_pred eEEEec-CCCEEEEEeCCCcEEEEECCC-CcEE-EEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEec
Q 001042 886 VRAINS-DRGKVVSGSDDQSVLVWDKQT-SQLL-EELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVG 961 (1178)
Q Consensus 886 V~~~s~-d~~~l~sgs~dg~I~iwd~~t-~~~~-~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~ 961 (1178)
..+||| ....+++|+.||+||+|+++. |..+ +....|.++|.+++|+ +|..+++|+.|+.+++||+.+++ +..+.
T Consensus 32 ~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~ 110 (347)
T KOG0647|consen 32 ALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVA 110 (347)
T ss_pred eeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeee
Confidence 336788 556677999999999999987 3433 3456799999999999 78999999999999999999995 55667
Q ss_pred CCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEcCCEEEEEeCCCcEEEEEcCCCeee
Q 001042 962 RCSSAVLCMEYDDSTG--ILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCD 1039 (1178)
Q Consensus 962 ~~~~~I~~l~~sp~~~--~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~ 1039 (1178)
.|..+|.++.|-+... .|++|+.|.+|+.||++...++.++. -.+.+.++..-..+++++..++.|.+|+++++...
T Consensus 111 ~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te 189 (347)
T KOG0647|consen 111 AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVLYPMAVVATAERHIAVYNLENPPTE 189 (347)
T ss_pred ecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhccCceeEEEecCCcEEEEEcCCCcch
Confidence 8999999999988665 89999999999999999999988874 45678888887789999999999999999876432
Q ss_pred eEe-c-cCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCC------cEEEE-----ecCCCEEEEE
Q 001042 1040 AVL-A-CHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSS------AILSI-----NAGDHWLGIG 1106 (1178)
Q Consensus 1040 ~~~-~-~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~------~i~~i-----s~dg~~Lasg 1106 (1178)
... . .-.-.+.|++..+|....+.|+-+|.+.+..++.+....-..++.|.. .|.++ +|.-..|+++
T Consensus 190 ~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTa 269 (347)
T KOG0647|consen 190 FKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTA 269 (347)
T ss_pred hhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEe
Confidence 221 1 123468899999998888999999999999998864333344444542 24443 6888999999
Q ss_pred eCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEE
Q 001042 1107 AADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSG 1163 (1178)
Q Consensus 1107 s~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~ 1163 (1178)
+.||++.+||-+.. .-+.+...|..+|++.+|+.+|.++|-+
T Consensus 270 GsDGtf~FWDkdar---------------~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 270 GSDGTFSFWDKDAR---------------TKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred cCCceEEEecchhh---------------hhhhccCcCCCccceeEecCCCCEEEEE
Confidence 99999999998643 3344556788999999999999998866
No 124
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.89 E-value=6.2e-21 Score=216.34 Aligned_cols=361 Identities=19% Similarity=0.320 Sum_probs=274.8
Q ss_pred EecCCCCcccccccc-eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceeccccccCCCCE
Q 001042 775 MFSREASSRSHSFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGF 853 (1178)
Q Consensus 775 aFSpdg~~las~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~ 853 (1178)
.+.|.+ .+|.|.+. |-+||-.+.. .+..+.||.++|+|+.|.|.++. ..+
T Consensus 21 sw~~~~-~vafGa~~~Iav~dp~k~~-------------------i~t~l~GH~a~VnC~~~l~~s~~---------~a~ 71 (764)
T KOG1063|consen 21 SWGPGG-LVAFGAGPAIAVADPEKIL-------------------IVTTLDGHVARVNCVHWLPTSEI---------VAE 71 (764)
T ss_pred cccccc-eEEecCCceEEEeCcccce-------------------eEEeccCCccceEEEEEcccccc---------cce
Confidence 565655 56666666 9999977554 67889999999999999854331 128
Q ss_pred EEEEeCCCcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEEeCCCcEEEEECCCCc--EEEEecCCCCce--EEE
Q 001042 854 FISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQ--LLEELKGHDAQV--SCV 929 (1178)
Q Consensus 854 Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sgs~dg~I~iwd~~t~~--~~~~l~~h~~~V--~~l 929 (1178)
+++|+.||.|++|.+.......+..+.+|...+.|+........+.+.|+.+.+||.+..+ +...+.-..+.+ .|+
T Consensus 72 ~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL 151 (764)
T KOG1063|consen 72 MVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCL 151 (764)
T ss_pred EEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHH
Confidence 9999999999999988556667788899999999997666555555889999999996555 223333222232 233
Q ss_pred EEe--CCC-eEEEEeCCCeEEEEeCCCC--eEEEEecCCCCCEEEEEEeCCCC---EEEEEeCCCeEEEEECCCCc----
Q 001042 930 RML--SGE-RVLTASHDGTVKMWDVRTD--TCVATVGRCSSAVLCMEYDDSTG---ILAAGGRDAVANIWDIRAGR---- 997 (1178)
Q Consensus 930 ~~~--~~~-~l~sgs~dg~V~iwd~~~~--~~~~~~~~~~~~I~~l~~sp~~~---~l~sgs~dg~I~lwD~~~~~---- 997 (1178)
+.. ++. .++.|+.+..|.++.-.++ +.+..+.+|.+.|.+++|...+. ++++++.|..|++|.+.-+.
T Consensus 152 ~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~ 231 (764)
T KOG1063|consen 152 AALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDS 231 (764)
T ss_pred hhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccc
Confidence 333 233 3556677778888866544 45677889999999999987544 78999999999999875322
Q ss_pred -----------------eEEE----------EecCCccEEEEEEcCC--EEEEEeCCCcEEEEEcCCCe--e-----eeE
Q 001042 998 -----------------QMHK----------FLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRGT--C-----DAV 1041 (1178)
Q Consensus 998 -----------------~~~~----------~~~~~~~v~~l~~~~~--~l~sgs~dg~I~iwd~~~~~--~-----~~~ 1041 (1178)
.... +.+|.++|.++.|++. .|++++.|.++.+|.-.+.. - +..
T Consensus 232 ~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe 311 (764)
T KOG1063|consen 232 NEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGE 311 (764)
T ss_pred cccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeec
Confidence 1111 2389999999999765 79999999999999876542 2 222
Q ss_pred eccCCCcEEEEEEecCCCEEEEEeCCCcEEEEEC-CCCceEEEEEecccCCcEEEE--ecCCCEEEEEeCCCcEEEEEcC
Q 001042 1042 LACHAGPVQCVEYSSSDRGIITGSSDGLLRFWEN-DDGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRP 1118 (1178)
Q Consensus 1042 ~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~-~~~~~~~~~~~~~h~~~i~~i--s~dg~~Lasgs~Dg~I~iwd~~ 1118 (1178)
+.+..+...+..|+|+++.+++-+..|..++|.. +.........+.||...|..+ +|.|.+|.+.|.|.+-|++-.-
T Consensus 312 ~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~w 391 (764)
T KOG1063|consen 312 VGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARW 391 (764)
T ss_pred ccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeeccc
Confidence 3344567899999999999999999999999983 333445666778999999888 6789999999999999999864
Q ss_pred CCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001042 1119 QERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEAT 1175 (1178)
Q Consensus 1119 ~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~ 1175 (1178)
|. ...|..+..++-|...++|++|-+....+++|.+...+|+++..
T Consensus 392 ----------g~-q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aP 437 (764)
T KOG1063|consen 392 ----------GR-QQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAP 437 (764)
T ss_pred ----------cc-ccceeeecccccccccceeeehccCCceeeecccceeeeeecCc
Confidence 22 23488999999999999999999977778899999999999875
No 125
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=1.9e-21 Score=199.65 Aligned_cols=279 Identities=24% Similarity=0.387 Sum_probs=217.7
Q ss_pred cccccceEEEe---cCCCEEEEEeCCCcEEEEECCCCcE----------EE-----EecCCCCceEEEEEe--CCCeEEE
Q 001042 880 KGHTRTVRAIN---SDRGKVVSGSDDQSVLVWDKQTSQL----------LE-----ELKGHDAQVSCVRML--SGERVLT 939 (1178)
Q Consensus 880 ~~h~~~V~~~s---~d~~~l~sgs~dg~I~iwd~~t~~~----------~~-----~l~~h~~~V~~l~~~--~~~~l~s 939 (1178)
..|.+.|.++. -.|+++++|+.||.|.+||++.... +. .-.+|.-.|..+.|- +...+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 35777787764 4589999999999999999976431 11 123677889999887 7888999
Q ss_pred EeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeC---CCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEcC
Q 001042 940 ASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDD---STGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR 1016 (1178)
Q Consensus 940 gs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp---~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~ 1016 (1178)
++.|.++++||..+-+....+ ..++.|.+-+++| ...++|+|..+-.|++.|+.+|...+.+.+|.+.|.++.|++
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp 198 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSP 198 (397)
T ss_pred ccccceEEEeecccceeeEEe-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEecc
Confidence 999999999999998887777 4467888888888 355788889999999999999999999999999999999977
Q ss_pred C---EEEEEeCCCcEEEEEcCCC-eeeeEe--------------ccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 001042 1017 D---TVITGSDDWTARMWSISRG-TCDAVL--------------ACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDG 1078 (1178)
Q Consensus 1017 ~---~l~sgs~dg~I~iwd~~~~-~~~~~~--------------~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~ 1078 (1178)
. .|++|+.||.|++||++.. .+...+ ..|.+.|++++|+.+|.++++++.|..+++|+..+|
T Consensus 199 ~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G 278 (397)
T KOG4283|consen 199 SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESG 278 (397)
T ss_pred CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccC
Confidence 6 7999999999999999864 232222 257788999999999999999999999999999988
Q ss_pred ceEEEEEec-ccCCcE---EEE-ecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEE
Q 001042 1079 GIKCVKNVT-IHSSAI---LSI-NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIAS 1153 (1178)
Q Consensus 1079 ~~~~~~~~~-~h~~~i---~~i-s~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~laf 1153 (1178)
+.......+ .|...+ ..+ +.+...++.--.++++.++++- .| ..++.+.+|...|.+.++
T Consensus 279 ~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~---------sg------s~ir~l~~h~k~i~c~~~ 343 (397)
T KOG4283|consen 279 RNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLL---------EG------SFVRRLSTHLKRINCAAY 343 (397)
T ss_pred cccccccccccccccccceEEEeecccceEEEEecCCeEEEEEcc---------Cc------eEEEeeecccceeeEEee
Confidence 422111100 111111 111 3344444444556888888876 33 556667788888999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEC
Q 001042 1154 DLERKRICSGGRNGLLRLWEA 1174 (1178)
Q Consensus 1154 spdg~~Las~s~Dg~V~IWdv 1174 (1178)
-|+=+...+|+.|+.|..|-.
T Consensus 344 ~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 344 RPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred cCchhhhhccccCCccccccc
Confidence 999999999999999999975
No 126
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=2.5e-21 Score=211.19 Aligned_cols=266 Identities=18% Similarity=0.298 Sum_probs=209.4
Q ss_pred CcEEEEECCCCcEEEEecCC-CCceEEEEEeCCCeEEEEe-CCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEE
Q 001042 903 QSVLVWDKQTSQLLEELKGH-DAQVSCVRMLSGERVLTAS-HDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILA 980 (1178)
Q Consensus 903 g~I~iwd~~t~~~~~~l~~h-~~~V~~l~~~~~~~l~sgs-~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~ 980 (1178)
.++.+||+++|....++++. ...-.++....+.+++++. ....+.+|.+.............+.+.+++-+|+|.+++
T Consensus 18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ 97 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLL 97 (476)
T ss_pred cceeEEecCCCceeEEecCcccccchhhhhhchhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEE
Confidence 45999999999999998865 2222333333455666554 455789999876555443334567899999999999999
Q ss_pred EEeCCCeEEEEECCCCceEEEEecCCccEEEEEE--cCCEEEEEeCCCcEEEEEcC---------CCeeeeEeccCCCcE
Q 001042 981 AGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM--DRDTVITGSDDWTARMWSIS---------RGTCDAVLACHAGPV 1049 (1178)
Q Consensus 981 sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~---------~~~~~~~~~~h~~~I 1049 (1178)
.|+..|.|++|.+.+|..+..+.+|-..|+|+.| ++.++++|+.||.|.+|++. +-++.+.+..|.-+|
T Consensus 98 ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsI 177 (476)
T KOG0646|consen 98 AGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSI 177 (476)
T ss_pred eecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCccee
Confidence 9999999999999999999999999999999999 45599999999999999863 246778899999999
Q ss_pred EEEEEecC--CCEEEEEeCCCcEEEEECCCCceEEEEEecc-cCCcEEEEecCCCEEEEEeCCCcEEEEEcCCCcc----
Q 001042 1050 QCVEYSSS--DRGIITGSSDGLLRFWENDDGGIKCVKNVTI-HSSAILSINAGDHWLGIGAADNSMSLFHRPQERL---- 1122 (1178)
Q Consensus 1050 ~~l~~spd--g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~-h~~~i~~is~dg~~Lasgs~Dg~I~iwd~~~~~~---- 1122 (1178)
+.+...+. ..+++|+|.|.++++||+..| ..+.++.. .......++|.+..+.+|+.+|.|.+.++..-..
T Consensus 178 TDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g--~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~ 255 (476)
T KOG0646|consen 178 TDLQIGSGGTNARLYTASEDRTIKLWDLSLG--VLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAG 255 (476)
T ss_pred EEEEecCCCccceEEEecCCceEEEEEeccc--eeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCccccc
Confidence 99988765 357999999999999999999 44444332 2233345589999999999999999988764210
Q ss_pred ---ccccCCCCCccceeEeeccCCCcc--cEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001042 1123 ---GGFSGTGSKMSGWQLYRTPQKTVA--VVRCIASDLERKRICSGGRNGLLRLWEATI 1176 (1178)
Q Consensus 1123 ---~~~~~~g~~~~~~~~~~~~~~h~~--~V~~lafspdg~~Las~s~Dg~V~IWdv~t 1176 (1178)
.++...+ .....+.||.+ .|+|++.+-||.+|++|+.||.|+|||+.+
T Consensus 256 v~~k~~~~~~------t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S 308 (476)
T KOG0646|consen 256 VNQKGRHEEN------TQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYS 308 (476)
T ss_pred cccccccccc------ceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecch
Confidence 1111111 34556778988 999999999999999999999999999864
No 127
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.88 E-value=1.7e-21 Score=212.60 Aligned_cols=247 Identities=22% Similarity=0.405 Sum_probs=204.1
Q ss_pred eEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCcee--------eEeecccccceEE--E
Q 001042 820 IRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSEL--------RATLKGHTRTVRA--I 889 (1178)
Q Consensus 820 ~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~--------~~~l~~h~~~V~~--~ 889 (1178)
+...-.|.+.|+.+.+-| .+...+|+++..+.|.|||........ ...+.||...-.+ +
T Consensus 117 i~~~i~h~gEVnRaRymP-----------Qnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsW 185 (422)
T KOG0264|consen 117 ISQKINHDGEVNRARYMP-----------QNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSW 185 (422)
T ss_pred EEEeccCCccchhhhhCC-----------CCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccccccccc
Confidence 333446999999999986 677889999999999999976332222 2378888875444 4
Q ss_pred ec-CCCEEEEEeCCCcEEEEECCCCc-------EEEEecCCCCceEEEEEe--CCCeEEEEeCCCeEEEEeCC--CCeEE
Q 001042 890 NS-DRGKVVSGSDDQSVLVWDKQTSQ-------LLEELKGHDAQVSCVRML--SGERVLTASHDGTVKMWDVR--TDTCV 957 (1178)
Q Consensus 890 s~-d~~~l~sgs~dg~I~iwd~~t~~-------~~~~l~~h~~~V~~l~~~--~~~~l~sgs~dg~V~iwd~~--~~~~~ 957 (1178)
++ ....+++|+.|++|++||+.... ....+.+|...|..++|+ +.+.+++++.|+.+.|||++ +.++.
T Consensus 186 n~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~ 265 (422)
T KOG0264|consen 186 NRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPS 265 (422)
T ss_pred ccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCc
Confidence 43 34579999999999999986532 345678999999999999 68889999999999999999 55666
Q ss_pred EEecCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCC-ceEEEEecCCccEEEEEEcCC---EEEEEeCCCcEEEEE
Q 001042 958 ATVGRCSSAVLCMEYDD-STGILAAGGRDAVANIWDIRAG-RQMHKFLGHTKWIRSIRMDRD---TVITGSDDWTARMWS 1032 (1178)
Q Consensus 958 ~~~~~~~~~I~~l~~sp-~~~~l~sgs~dg~I~lwD~~~~-~~~~~~~~~~~~v~~l~~~~~---~l~sgs~dg~I~iwd 1032 (1178)
.....|...|.|++|+| ++..||+|+.|++|.+||+|+. ++++++.+|...|.++.|+|+ .+++++.|+.+.+||
T Consensus 266 ~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWD 345 (422)
T KOG0264|consen 266 HSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWD 345 (422)
T ss_pred ccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEe
Confidence 77788999999999999 6678899999999999999985 568899999999999999775 899999999999999
Q ss_pred cCCC--------------eeeeEeccCCCcEEEEEEecCCCE-EEEEeCCCcEEEEECCC
Q 001042 1033 ISRG--------------TCDAVLACHAGPVQCVEYSSSDRG-IITGSSDGLLRFWENDD 1077 (1178)
Q Consensus 1033 ~~~~--------------~~~~~~~~h~~~I~~l~~spdg~~-L~sgs~Dg~I~iwd~~~ 1077 (1178)
+..- +.+..-.||...|..+.|+|+..+ |++.+.|+.+.||....
T Consensus 346 ls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 346 LSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 8652 223555689999999999999876 67788999999998764
No 128
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=1.2e-20 Score=196.35 Aligned_cols=265 Identities=15% Similarity=0.251 Sum_probs=210.7
Q ss_pred ccceEE--EecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEe
Q 001042 883 TRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATV 960 (1178)
Q Consensus 883 ~~~V~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~ 960 (1178)
...|.+ |++.++.|++++.||++++||+........++ |..++.+.+|.+...+++|+.||.|+.+|+.++... .+
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~-~i 90 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNED-QI 90 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCCceEEEeccCceEEEEEecCCcce-ee
Confidence 345554 57888899999999999999999886655555 899999999999999999999999999999888754 45
Q ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEcCCEEEEEeCCCcEEEEEcCCCeeee
Q 001042 961 GRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDA 1040 (1178)
Q Consensus 961 ~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~ 1040 (1178)
..|...|.|+.+++....+++|+.|++|++||.++......+. ..+.|.++...++.|++|+.|..|.+||+++.....
T Consensus 91 gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~ 169 (323)
T KOG1036|consen 91 GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPF 169 (323)
T ss_pred ccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEeccCCEEEEeecCceEEEEEcccccchh
Confidence 5789999999999988899999999999999999865555553 444899999999999999999999999999865443
Q ss_pred Eec--cCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCc--eEEEEEecccCC---------cE--EEEecCCCEEEE
Q 001042 1041 VLA--CHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGG--IKCVKNVTIHSS---------AI--LSINAGDHWLGI 1105 (1178)
Q Consensus 1041 ~~~--~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~--~~~~~~~~~h~~---------~i--~~is~dg~~Las 1105 (1178)
... .-+-.+.|+++-|++.-.++++-||.|.+=.++... ......++.|.. +| .+++|-...+|+
T Consensus 170 q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaT 249 (323)
T KOG1036|consen 170 QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFAT 249 (323)
T ss_pred hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEe
Confidence 221 234578999999988889999999999887666541 011222333321 23 344788889999
Q ss_pred EeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeC
Q 001042 1106 GAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGR 1165 (1178)
Q Consensus 1106 gs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~ 1165 (1178)
|+.||.|.+||..++ +-+..+..-...|.+++|+.||..||.|+.
T Consensus 250 gGsDG~V~~Wd~~~r---------------Krl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 250 GGSDGIVNIWDLFNR---------------KRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred cCCCceEEEccCcch---------------hhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 999999999999854 223334444567999999999999999964
No 129
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=8.5e-21 Score=197.56 Aligned_cols=262 Identities=21% Similarity=0.332 Sum_probs=205.4
Q ss_pred cccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEEe-cCCCEEEEEeCCCc
Q 001042 826 HAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAIN-SDRGKVVSGSDDQS 904 (1178)
Q Consensus 826 H~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s-~d~~~l~sgs~dg~ 904 (1178)
-...|.+|.|+ +.+..|+.++.||++++||+.. ..+...+ .|..++.+.. .+...+++|+.||.
T Consensus 12 P~d~IS~v~f~------------~~~~~LLvssWDgslrlYdv~~--~~l~~~~-~~~~plL~c~F~d~~~~~~G~~dg~ 76 (323)
T KOG1036|consen 12 PEDGISSVKFS------------PSSSDLLVSSWDGSLRLYDVPA--NSLKLKF-KHGAPLLDCAFADESTIVTGGLDGQ 76 (323)
T ss_pred ChhceeeEEEc------------CcCCcEEEEeccCcEEEEeccc--hhhhhhe-ecCCceeeeeccCCceEEEeccCce
Confidence 36779999997 7788888888999999999873 3333333 4778888543 45678999999999
Q ss_pred EEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEe
Q 001042 905 VLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGG 983 (1178)
Q Consensus 905 I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs 983 (1178)
|+.+|+.+++.. .+..|..+|.|+.+. ..+.+++|+.|++|++||.+.......+.. ...|.++.. .|+.|++|+
T Consensus 77 vr~~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v--~g~~LvVg~ 152 (323)
T KOG1036|consen 77 VRRYDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDV--SGNRLVVGT 152 (323)
T ss_pred EEEEEecCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEec--cCCEEEEee
Confidence 999999988764 566799999999999 577899999999999999998666655533 347777766 477899999
Q ss_pred CCCeEEEEECCCCceEEEEe--cCCccEEEEEEcC--CEEEEEeCCCcEEEEEcCCC----eeeeEeccCCC--------
Q 001042 984 RDAVANIWDIRAGRQMHKFL--GHTKWIRSIRMDR--DTVITGSDDWTARMWSISRG----TCDAVLACHAG-------- 1047 (1178)
Q Consensus 984 ~dg~I~lwD~~~~~~~~~~~--~~~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~----~~~~~~~~h~~-------- 1047 (1178)
.+..+.+||+++.....+.+ .-.-.+.|++.-+ .-.++++-||.|.+=.++.. +....+++|..
T Consensus 153 ~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~ 232 (323)
T KOG1036|consen 153 SDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEII 232 (323)
T ss_pred cCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEE
Confidence 99999999999876543222 2334677887744 67899999999998776655 44556777753
Q ss_pred -cEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEE--EecCCCEEEEEeC
Q 001042 1048 -PVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILS--INAGDHWLGIGAA 1108 (1178)
Q Consensus 1048 -~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~--is~dg~~Lasgs~ 1108 (1178)
+|++++|+|-...++||+.||.|.+||..+. +.+..+......|.+ ++.+|..||+|+.
T Consensus 233 yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r--Krl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 233 YPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR--KRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred EEeceeEeccccceEEecCCCceEEEccCcch--hhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 6999999999999999999999999999887 555666555555544 4789999999875
No 130
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=7.7e-22 Score=198.22 Aligned_cols=244 Identities=23% Similarity=0.324 Sum_probs=199.4
Q ss_pred EEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCc-eeeEeecccccceEEE---ec-CCCE
Q 001042 821 RIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGS-ELRATLKGHTRTVRAI---NS-DRGK 895 (1178)
Q Consensus 821 ~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~-~~~~~l~~h~~~V~~~---s~-d~~~ 895 (1178)
.+-.+|.+.|.++..- -.|+.|||+++|++|+|+.+..++. .+..++.||.++|+.+ +| -|..
T Consensus 5 ~idt~H~D~IHda~lD------------yygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~i 72 (299)
T KOG1332|consen 5 TIDTQHEDMIHDAQLD------------YYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTI 72 (299)
T ss_pred ehhhhhhhhhhHhhhh------------hhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcE
Confidence 3445788888776543 5699999999999999999986665 7889999999999965 33 6899
Q ss_pred EEEEeCCCcEEEEECCCCcE--EEEecCCCCceEEEEEeC---CCeEEEEeCCCeEEEEeCCCC---eEEEEecCCCCCE
Q 001042 896 VVSGSDDQSVLVWDKQTSQL--LEELKGHDAQVSCVRMLS---GERVLTASHDGTVKMWDVRTD---TCVATVGRCSSAV 967 (1178)
Q Consensus 896 l~sgs~dg~I~iwd~~t~~~--~~~l~~h~~~V~~l~~~~---~~~l~sgs~dg~V~iwd~~~~---~~~~~~~~~~~~I 967 (1178)
||+++.||.|.||.-++|+- ......|...|++++|.+ +-.|++++.||.|.+.+.++. ...+....|.-.|
T Consensus 73 LAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~Gv 152 (299)
T KOG1332|consen 73 LASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGV 152 (299)
T ss_pred eeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccccc
Confidence 99999999999999888743 345678999999999984 556999999999999998765 1233446788999
Q ss_pred EEEEEeCC---C-----------CEEEEEeCCCeEEEEECCCCc--eEEEEecCCccEEEEEEcCC------EEEEEeCC
Q 001042 968 LCMEYDDS---T-----------GILAAGGRDAVANIWDIRAGR--QMHKFLGHTKWIRSIRMDRD------TVITGSDD 1025 (1178)
Q Consensus 968 ~~l~~sp~---~-----------~~l~sgs~dg~I~lwD~~~~~--~~~~~~~~~~~v~~l~~~~~------~l~sgs~d 1025 (1178)
++++|.|. | +.|++|+.|..|++|+..+++ .-+++.+|.+.|+.++|.|. ++++++.|
T Consensus 153 nsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqD 232 (299)
T KOG1332|consen 153 NSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQD 232 (299)
T ss_pred ceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCC
Confidence 99999985 4 569999999999999998763 34558899999999999654 79999999
Q ss_pred CcEEEEEcCCCe---eeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 001042 1026 WTARMWSISRGT---CDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWEND 1076 (1178)
Q Consensus 1026 g~I~iwd~~~~~---~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~ 1076 (1178)
|++.||..+... ....+......+..+.||..|+.|+.++.|+.|.+|.-+
T Consensus 233 g~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 233 GTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred CcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 999999876321 112233456789999999999999999999999999754
No 131
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.88 E-value=3.4e-21 Score=210.27 Aligned_cols=252 Identities=18% Similarity=0.301 Sum_probs=204.4
Q ss_pred CCCCceEEEEEe--CCCeEEEEeCCCeEEEEeCCCCeE----------EEEecCCCCCEEEEEEeC-CCCEEEEEeCCCe
Q 001042 921 GHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTDTC----------VATVGRCSSAVLCMEYDD-STGILAAGGRDAV 987 (1178)
Q Consensus 921 ~h~~~V~~l~~~--~~~~l~sgs~dg~V~iwd~~~~~~----------~~~~~~~~~~I~~l~~sp-~~~~l~sgs~dg~ 987 (1178)
.|.+.|+.+.+- +...+++++..+.|.|||..+... -..+.+|...-.+++|++ ....+++|+.|+.
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 488899988887 566788889999999999864321 125667877778899998 4457889999999
Q ss_pred EEEEECCCCc-------eEEEEecCCccEEEEEEc---CCEEEEEeCCCcEEEEEcC--CCeeeeEeccCCCcEEEEEEe
Q 001042 988 ANIWDIRAGR-------QMHKFLGHTKWIRSIRMD---RDTVITGSDDWTARMWSIS--RGTCDAVLACHAGPVQCVEYS 1055 (1178)
Q Consensus 988 I~lwD~~~~~-------~~~~~~~~~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~--~~~~~~~~~~h~~~I~~l~~s 1055 (1178)
|.+||+.... +...+.+|...|..++|+ .+.+++++.|+.+.|||++ +.++.....+|.+.|+|++|+
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn 281 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN 281 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence 9999997532 345678999999999994 5689999999999999999 566677788999999999999
Q ss_pred cC-CCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE--ecC-CCEEEEEeCCCcEEEEEcCCCccc---cccCC
Q 001042 1056 SS-DRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI--NAG-DHWLGIGAADNSMSLFHRPQERLG---GFSGT 1128 (1178)
Q Consensus 1056 pd-g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~d-g~~Lasgs~Dg~I~iwd~~~~~~~---~~~~~ 1128 (1178)
|- +..|||||.|++|.+||+++-. .++..+.+|...|..+ ||+ ...||+++.|+.+.+||+..-.-. ....+
T Consensus 282 p~~~~ilAT~S~D~tV~LwDlRnL~-~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~d 360 (422)
T KOG0264|consen 282 PFNEFILATGSADKTVALWDLRNLN-KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAED 360 (422)
T ss_pred CCCCceEEeccCCCcEEEeechhcc-cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhcc
Confidence 95 4568899999999999999875 5788999999999988 564 568999999999999999742111 11111
Q ss_pred CCCccceeEeeccCCCcccEEEEEEcCCCCE-EEEEeCCCcEEEEECCCC
Q 001042 1129 GSKMSGWQLYRTPQKTVAVVRCIASDLERKR-ICSGGRNGLLRLWEATIN 1177 (1178)
Q Consensus 1129 g~~~~~~~~~~~~~~h~~~V~~lafspdg~~-Las~s~Dg~V~IWdv~tg 1177 (1178)
| .-+++....||...|..+.|+|+..+ |+|+++|+.+.||+....
T Consensus 361 g----ppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 361 G----PPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN 406 (422)
T ss_pred C----CcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence 1 12667788899999999999998765 788899999999998743
No 132
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.87 E-value=4.4e-21 Score=215.65 Aligned_cols=271 Identities=15% Similarity=0.241 Sum_probs=211.3
Q ss_pred CCEEEEEeCCCcEEEEECCCCcE------EEEecCCCCceEEEEEeC-CCeEEEEeCCCeEEEEeCCCCeEEEE--ecCC
Q 001042 893 RGKVVSGSDDQSVLVWDKQTSQL------LEELKGHDAQVSCVRMLS-GERVLTASHDGTVKMWDVRTDTCVAT--VGRC 963 (1178)
Q Consensus 893 ~~~l~sgs~dg~I~iwd~~t~~~------~~~l~~h~~~V~~l~~~~-~~~l~sgs~dg~V~iwd~~~~~~~~~--~~~~ 963 (1178)
...|+.+.+||.|.++|....+. +.....|...|..+.|.+ ...|++++.|.++++||+++++++.. +.+|
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH 143 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGH 143 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeeccc
Confidence 45688999999999999875432 245668999999999995 55688999999999999999998876 7899
Q ss_pred CCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCc---------------------------eEEEEecCCc----cEEE
Q 001042 964 SSAVLCMEYDDS-TGILAAGGRDAVANIWDIRAGR---------------------------QMHKFLGHTK----WIRS 1011 (1178)
Q Consensus 964 ~~~I~~l~~sp~-~~~l~sgs~dg~I~lwD~~~~~---------------------------~~~~~~~~~~----~v~~ 1011 (1178)
...|.+++|.+. ...+++|+.||.|.|||++-.. .+.....+.. .|+.
T Consensus 144 ~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTv 223 (720)
T KOG0321|consen 144 TGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTV 223 (720)
T ss_pred ccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEE
Confidence 999999999994 5678899999999999987332 0111122222 3555
Q ss_pred EEE-cCCEEEEEeC-CCcEEEEEcCCCeeeeE--------eccC---CCcEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 001042 1012 IRM-DRDTVITGSD-DWTARMWSISRGTCDAV--------LACH---AGPVQCVEYSSSDRGIITGSSDGLLRFWENDDG 1078 (1178)
Q Consensus 1012 l~~-~~~~l~sgs~-dg~I~iwd~~~~~~~~~--------~~~h---~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~ 1078 (1178)
+.| |.+.|++++. |+.|++||+++...... +..| .-.++++..+..|.+|.+.+.|+.|++|++.+-
T Consensus 224 v~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~ 303 (720)
T KOG0321|consen 224 VLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSL 303 (720)
T ss_pred EEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEecccc
Confidence 666 6778998887 99999999987654322 2223 335788888888999988888999999999887
Q ss_pred ceEEEEEecccCCcEE----EEecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEc
Q 001042 1079 GIKCVKNVTIHSSAIL----SINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASD 1154 (1178)
Q Consensus 1079 ~~~~~~~~~~h~~~i~----~is~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafs 1154 (1178)
....+..+.++...-. .++|++.++++|+.|....+|.+.+.. .....+.||.-.|++++|.
T Consensus 304 s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e--------------~~~~~l~Ght~eVt~V~w~ 369 (720)
T KOG0321|consen 304 SISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE--------------APPALLLGHTREVTTVRWL 369 (720)
T ss_pred CcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc--------------CChhhhhCcceEEEEEeec
Confidence 6666666666554332 338999999999999999999997432 4445567999999999998
Q ss_pred CCC-CEEEEEeCCCcEEEEECCCC
Q 001042 1155 LER-KRICSGGRNGLLRLWEATIN 1177 (1178)
Q Consensus 1155 pdg-~~Las~s~Dg~V~IWdv~tg 1177 (1178)
|.. .-+|++++|-.++||++..|
T Consensus 370 pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 370 PSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred cccCCCceeeccCcceEEEeccCc
Confidence 742 33677799999999999766
No 133
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.3e-20 Score=204.95 Aligned_cols=285 Identities=16% Similarity=0.291 Sum_probs=221.7
Q ss_pred ccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceE--EEecCCC-EEEEEeCCC
Q 001042 827 AGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRG-KVVSGSDDQ 903 (1178)
Q Consensus 827 ~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~--~~s~d~~-~l~sgs~dg 903 (1178)
.++|++|.|+ |....+++|+.||+++||.++......++.+.-...+|. +|.|+|. .+++++...
T Consensus 213 ~~~I~sv~FH------------p~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrk 280 (514)
T KOG2055|consen 213 HGGITSVQFH------------PTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRK 280 (514)
T ss_pred cCCceEEEec------------CCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccce
Confidence 5789999999 788999999999999999998555555565554555555 5799998 899999999
Q ss_pred cEEEEECCCCcEEE--EecCCC-CceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEE
Q 001042 904 SVLVWDKQTSQLLE--ELKGHD-AQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGIL 979 (1178)
Q Consensus 904 ~I~iwd~~t~~~~~--~l~~h~-~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l 979 (1178)
.++.||+.+.+..+ ...++. ..+.....+ +++.++..+..|.|.+....+++.+.+++ ..+.|..++|+.+++.|
T Consensus 281 y~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l 359 (514)
T KOG2055|consen 281 YLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKEL 359 (514)
T ss_pred EEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEE
Confidence 99999999887643 333443 344555556 78899999999999999999999988874 46789999999999999
Q ss_pred EEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEcCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCC
Q 001042 980 AAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDR 1059 (1178)
Q Consensus 980 ~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~ 1059 (1178)
++.+.+|.|++||+++..+++++.. +|.| .-++++.+++|.
T Consensus 360 ~~~~~~GeV~v~nl~~~~~~~rf~D--------------------~G~v-------------------~gts~~~S~ng~ 400 (514)
T KOG2055|consen 360 LASGGTGEVYVWNLRQNSCLHRFVD--------------------DGSV-------------------HGTSLCISLNGS 400 (514)
T ss_pred EEEcCCceEEEEecCCcceEEEEee--------------------cCcc-------------------ceeeeeecCCCc
Confidence 9999999999999998877777632 2222 125677788889
Q ss_pred EEEEEeCCCcEEEEECCC----CceEEEEEecccCCcEEEE--ecCCCEEEEEeC--CCcEEEEEcCCCccccccCCCCC
Q 001042 1060 GIITGSSDGLLRFWENDD----GGIKCVKNVTIHSSAILSI--NAGDHWLGIGAA--DNSMSLFHRPQERLGGFSGTGSK 1131 (1178)
Q Consensus 1060 ~L~sgs~Dg~I~iwd~~~----~~~~~~~~~~~h~~~i~~i--s~dg~~Lasgs~--Dg~I~iwd~~~~~~~~~~~~g~~ 1131 (1178)
++|+|+..|.|.|||.++ ..+++++.+..-...|.++ ++|++.||.+|. +..+++-++++.. .
T Consensus 401 ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~T---------V 471 (514)
T KOG2055|consen 401 YLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCT---------V 471 (514)
T ss_pred eEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEecccee---------e
Confidence 999999999999998654 2345566555555556554 789999988775 6789999988542 2
Q ss_pred ccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001042 1132 MSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEAT 1175 (1178)
Q Consensus 1132 ~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~ 1175 (1178)
...|....+..+| |+||+|||.|.+||.|..+|.|.+|.+.
T Consensus 472 FsNfP~~n~~vg~---vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 472 FSNFPTSNTKVGH---VTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eccCCCCCCcccc---eEEEEecCCCceEEeecCCCceeeEeec
Confidence 2334333333344 9999999999999999999999999874
No 134
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=4.2e-21 Score=193.00 Aligned_cols=244 Identities=19% Similarity=0.342 Sum_probs=201.4
Q ss_pred cCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCC---eEEEEecCCCCCEEEEEEeC--CCCEEEEEeCCCeEEEEEC
Q 001042 920 KGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTD---TCVATVGRCSSAVLCMEYDD--STGILAAGGRDAVANIWDI 993 (1178)
Q Consensus 920 ~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~---~~~~~~~~~~~~I~~l~~sp--~~~~l~sgs~dg~I~lwD~ 993 (1178)
..|.+.|.++... -+.+|+|++.|++|+|+.++.+ +.+.++.+|.++|..++|.. .|.+||+++.||.|.+|.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 4678888877766 7899999999999999999865 46788999999999999965 8999999999999999998
Q ss_pred CCCce--EEEEecCCccEEEEEEcCC----EEEEEeCCCcEEEEEcCCC---eeeeEeccCCCcEEEEEEecC---C---
Q 001042 994 RAGRQ--MHKFLGHTKWIRSIRMDRD----TVITGSDDWTARMWSISRG---TCDAVLACHAGPVQCVEYSSS---D--- 1058 (1178)
Q Consensus 994 ~~~~~--~~~~~~~~~~v~~l~~~~~----~l~sgs~dg~I~iwd~~~~---~~~~~~~~h~~~I~~l~~spd---g--- 1058 (1178)
.+++- ......|...|++++|-+. .|++++.||.|.+.+.++. ...+...+|.-.|++++|.|. |
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 88743 4456789999999999554 8999999999999998764 233455689999999999986 4
Q ss_pred --------CEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE--ecC----CCEEEEEeCCCcEEEEEcCCCcccc
Q 001042 1059 --------RGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI--NAG----DHWLGIGAADNSMSLFHRPQERLGG 1124 (1178)
Q Consensus 1059 --------~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~d----g~~Lasgs~Dg~I~iwd~~~~~~~~ 1124 (1178)
+.|++|+.|..|+||+.+++.......+.+|...|..+ .|. ..++|++|.||++.||.....
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e---- 243 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEE---- 243 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCc----
Confidence 56999999999999999998777777799999999777 343 468999999999999987521
Q ss_pred ccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001042 1125 FSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEAT 1175 (1178)
Q Consensus 1125 ~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~ 1175 (1178)
...|+. ..+......+..+.||..|+.|+.++.|..|.+|.-.
T Consensus 244 -------~e~wk~-tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 244 -------YEPWKK-TLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred -------cCcccc-cccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 112221 1122346779999999999999999999999999754
No 135
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=4e-20 Score=216.28 Aligned_cols=285 Identities=16% Similarity=0.220 Sum_probs=226.9
Q ss_pred cccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEEeCCC
Q 001042 824 RGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQ 903 (1178)
Q Consensus 824 ~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sgs~dg 903 (1178)
.+|++.-+.|+|- ++|++|++++.||.|++|+..... +.-.++..+...|.++..++.++++|+.++
T Consensus 10 yaht~G~t~i~~d------------~~gefi~tcgsdg~ir~~~~~sd~-e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~ 76 (933)
T KOG1274|consen 10 YAHTGGLTLICYD------------PDGEFICTCGSDGDIRKWKTNSDE-EEPETIDISGELVSSIACYSNHFLTGSEQN 76 (933)
T ss_pred hhccCceEEEEEc------------CCCCEEEEecCCCceEEeecCCcc-cCCchhhccCceeEEEeecccceEEeeccc
Confidence 5788889999986 899999999999999999965332 222344448888999999999999999999
Q ss_pred cEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEE
Q 001042 904 SVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAG 982 (1178)
Q Consensus 904 ~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sg 982 (1178)
+|.+|...+++.-..+...+-++.+++++ +|.+++.|+.|-.|++.+..+......+.+|+.+|.++.|+|++++||+.
T Consensus 77 tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvs 156 (933)
T KOG1274|consen 77 TVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVS 156 (933)
T ss_pred eEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEE
Confidence 99999999988766666667889999999 89999999999999999999999999999999999999999999999999
Q ss_pred eCCCeEEEEECCCCceEEEEecCCccEEEEEEcCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEE
Q 001042 983 GRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGII 1062 (1178)
Q Consensus 983 s~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~ 1062 (1178)
+.||.|++||+.++....++.+-.. ..+.. ....+..++|+|+|..++
T Consensus 157 s~dG~v~iw~~~~~~~~~tl~~v~k----------------------~n~~~----------~s~i~~~~aW~Pk~g~la 204 (933)
T KOG1274|consen 157 SCDGKVQIWDLQDGILSKTLTGVDK----------------------DNEFI----------LSRICTRLAWHPKGGTLA 204 (933)
T ss_pred ecCceEEEEEcccchhhhhcccCCc----------------------ccccc----------ccceeeeeeecCCCCeEE
Confidence 9999999999998776665532111 00100 045677899999988888
Q ss_pred EEeCCCcEEEEECCCCceEEEEEecccCCc--EEEEecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeec
Q 001042 1063 TGSSDGLLRFWENDDGGIKCVKNVTIHSSA--ILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRT 1140 (1178)
Q Consensus 1063 sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~--i~~is~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~ 1140 (1178)
..+.|+.|++|+..+.+.........+... +..++|+|.|||+++.||.|.|||.++..
T Consensus 205 ~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~------------------- 265 (933)
T KOG1274|consen 205 VPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHE------------------- 265 (933)
T ss_pred eeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccch-------------------
Confidence 889999999999998844333333334433 35569999999999999999999997411
Q ss_pred cCCCcccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 001042 1141 PQKTVAVVRCIASDLERKRICSGGRNGLLRLW 1172 (1178)
Q Consensus 1141 ~~~h~~~V~~lafspdg~~Las~s~Dg~V~IW 1172 (1178)
.......|.+++|.|+++.+-.-...|+.-+|
T Consensus 266 ~~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 266 RHEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred hccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 01223569999999998877655555554443
No 136
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.7e-20 Score=204.78 Aligned_cols=283 Identities=17% Similarity=0.275 Sum_probs=219.0
Q ss_pred EEeCC-CcEEEEcCCCCCceeeEeeccccc-ceEEE-ecCCCEEEEEe-CCCcEEEEECCCCcEEEEecCCCCceEEEEE
Q 001042 856 SGSTD-CLVKIWDPSLRGSELRATLKGHTR-TVRAI-NSDRGKVVSGS-DDQSVLVWDKQTSQLLEELKGHDAQVSCVRM 931 (1178)
Q Consensus 856 sgs~D-g~I~iWd~~~~~~~~~~~l~~h~~-~V~~~-s~d~~~l~sgs-~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~ 931 (1178)
+++.| .++.+||+.+ +.....+++... .-.+. .-.+.+++++. ....+.+|.+...........-.++|.+++-
T Consensus 12 ssS~d~~~~~~~dl~T--Gt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s 89 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRT--GTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALAS 89 (476)
T ss_pred ccCCCCcceeEEecCC--CceeEEecCcccccchhhhhhchhheeeecccCccccccccCchhhhhhhcccccceeeeec
Confidence 33444 4599999873 333344554421 11111 12346666664 4458999998765554433345678999998
Q ss_pred e-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC---------CCceEEE
Q 001042 932 L-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIR---------AGRQMHK 1001 (1178)
Q Consensus 932 ~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~---------~~~~~~~ 1001 (1178)
+ .|.+++.|+..|.+++|.+.+|..+..+..|-..|+++.|+.||.++++|+.||.|.+|++. +-++.+.
T Consensus 90 ~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~ 169 (476)
T KOG0646|consen 90 SNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHI 169 (476)
T ss_pred CCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceee
Confidence 8 45666666699999999999999999999999999999999999999999999999999874 3467888
Q ss_pred EecCCccEEEEEEcC----CEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 001042 1002 FLGHTKWIRSIRMDR----DTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDD 1077 (1178)
Q Consensus 1002 ~~~~~~~v~~l~~~~----~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~ 1077 (1178)
+..|.-+|+++.... .+++++|.|.++++||+..|..+.++. ....+.+++.+|.++.+.+|+.+|.|.+.++..
T Consensus 170 f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~ 248 (476)
T KOG0646|consen 170 FSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFK 248 (476)
T ss_pred eccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhc
Confidence 999999999999843 399999999999999999999888876 567899999999999999999999999887653
Q ss_pred Cc--------------eEEEEEecccCC--cEEEE--ecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEee
Q 001042 1078 GG--------------IKCVKNVTIHSS--AILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYR 1139 (1178)
Q Consensus 1078 ~~--------------~~~~~~~~~h~~--~i~~i--s~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~ 1139 (1178)
.. ......+.||.+ .|+++ +.||..|++|+.||.++|||+.+. ++++
T Consensus 249 ~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~---------------Q~iR 313 (476)
T KOG0646|consen 249 LSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK---------------QCIR 313 (476)
T ss_pred CCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH---------------HHHH
Confidence 21 134556678888 77666 899999999999999999999865 5555
Q ss_pred ccCCCcccEEEEEEcCC
Q 001042 1140 TPQKTVAVVRCIASDLE 1156 (1178)
Q Consensus 1140 ~~~~h~~~V~~lafspd 1156 (1178)
+.....++|+.+.+.|-
T Consensus 314 tl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 314 TLQTSKGPVTNLQINPL 330 (476)
T ss_pred HHhhhccccceeEeecc
Confidence 55555667777777553
No 137
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.86 E-value=1e-20 Score=206.35 Aligned_cols=275 Identities=19% Similarity=0.371 Sum_probs=219.8
Q ss_pred ccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCc-eeeEeeccc--ccceE--EEecCCCEEEEE
Q 001042 825 GHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGS-ELRATLKGH--TRTVR--AINSDRGKVVSG 899 (1178)
Q Consensus 825 gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~-~~~~~l~~h--~~~V~--~~s~d~~~l~sg 899 (1178)
.|..-|.+++.| ...+++.||+. |.|+|||+...+. ..+..+..- ...+. .+.+||+.|++|
T Consensus 417 ~HGEvVcAvtIS------------~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivG 483 (705)
T KOG0639|consen 417 AHGEVVCAVTIS------------NPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVG 483 (705)
T ss_pred ccCcEEEEEEec------------CCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEec
Confidence 588888888887 67888999885 5699999874322 222233222 22333 358999999999
Q ss_pred eCCCcEEEEECCCCcE--EEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCC
Q 001042 900 SDDQSVLVWDKQTSQL--LEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDST 976 (1178)
Q Consensus 900 s~dg~I~iwd~~t~~~--~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~ 976 (1178)
+.-.++.|||+..... ...+........+++.+ +.+..++++.||.|.|||+.+...++.+++|.+.+.|+.+++||
T Consensus 484 GeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dG 563 (705)
T KOG0639|consen 484 GEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDG 563 (705)
T ss_pred cccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCC
Confidence 9999999999986544 23444444566778888 67788899999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEE--cCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEE
Q 001042 977 GILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM--DRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEY 1054 (1178)
Q Consensus 977 ~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~ 1054 (1178)
..|.+|+-|++|+.||+++++.+... .....|.++.. .++++++|-.++.+.+.... +.....+.-|.+-|.++.|
T Consensus 564 tklWTGGlDntvRcWDlregrqlqqh-dF~SQIfSLg~cP~~dWlavGMens~vevlh~s-kp~kyqlhlheScVLSlKF 641 (705)
T KOG0639|consen 564 TKLWTGGLDNTVRCWDLREGRQLQQH-DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKF 641 (705)
T ss_pred ceeecCCCccceeehhhhhhhhhhhh-hhhhhheecccCCCccceeeecccCcEEEEecC-CccceeecccccEEEEEEe
Confidence 99999999999999999999877654 34567877776 56699999999999998864 4445666779999999999
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcE--EEEecCCCEEEEEeCCCcEEEEEc
Q 001042 1055 SSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAI--LSINAGDHWLGIGAADNSMSLFHR 1117 (1178)
Q Consensus 1055 spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i--~~is~dg~~Lasgs~Dg~I~iwd~ 1117 (1178)
.+.|+++++.+.|+.+..|...-| ..+...+ ....| ..+|.|.+++++|+.|..-.+|.+
T Consensus 642 a~cGkwfvStGkDnlLnawrtPyG--asiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 642 AYCGKWFVSTGKDNLLNAWRTPYG--ASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cccCceeeecCchhhhhhccCccc--cceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 999999999999999999998877 3444333 23344 456899999999999998888875
No 138
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.86 E-value=7.5e-19 Score=199.53 Aligned_cols=264 Identities=11% Similarity=0.101 Sum_probs=194.7
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeE-EEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEE
Q 001042 893 RGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERV-LTASHDGTVKMWDVRTDTCVATVGRCSSAVLCM 970 (1178)
Q Consensus 893 ~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l-~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l 970 (1178)
+..+++++.|+.+++||..+++.+..+..+.. +.+++|+ ++..+ ++++.++.|++||..+++....+..+. .+..+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~ 78 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELF 78 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEE
Confidence 35788999999999999999999888876544 6778898 55555 567789999999999998877665443 35678
Q ss_pred EEeCCCCEEEEE-eCCCeEEEEECCCCceEEEEecCCccEEEEEEc--CCEEEEEeCCC-cEEEEEcCCCeeeeEeccCC
Q 001042 971 EYDDSTGILAAG-GRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMD--RDTVITGSDDW-TARMWSISRGTCDAVLACHA 1046 (1178)
Q Consensus 971 ~~sp~~~~l~sg-s~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sgs~dg-~I~iwd~~~~~~~~~~~~h~ 1046 (1178)
+++|+++.++++ +.++.+++||+++++.+..+.. ...+.+++++ ++.+++++.++ .+.+||..+++...... ..
T Consensus 79 ~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~ 156 (300)
T TIGR03866 79 ALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VD 156 (300)
T ss_pred EECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cC
Confidence 999999977655 4689999999999887776643 2345677774 55788887765 46778998887765543 23
Q ss_pred CcEEEEEEecCCCEEEEE-eCCCcEEEEECCCCceEEEEEecccC-----C----cEEEEecCCCEEEE-EeCCCcEEEE
Q 001042 1047 GPVQCVEYSSSDRGIITG-SSDGLLRFWENDDGGIKCVKNVTIHS-----S----AILSINAGDHWLGI-GAADNSMSLF 1115 (1178)
Q Consensus 1047 ~~I~~l~~spdg~~L~sg-s~Dg~I~iwd~~~~~~~~~~~~~~h~-----~----~i~~is~dg~~Las-gs~Dg~I~iw 1115 (1178)
....+++|+++|++++++ ..++.|++||+.+++ ....+..+. . .-.+++++++++++ .+.++.+.+|
T Consensus 157 ~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~ 234 (300)
T TIGR03866 157 QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRK--VIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVV 234 (300)
T ss_pred CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcce--eeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEE
Confidence 456789999999988654 469999999999883 333332111 1 12456899998655 4556789999
Q ss_pred EcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCC
Q 001042 1116 HRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSG-GRNGLLRLWEATINI 1178 (1178)
Q Consensus 1116 d~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~-s~Dg~V~IWdv~tg~ 1178 (1178)
|..+.+ ..... .+...+.+++|+|+|++|+++ +.+|.|++||+.++.
T Consensus 235 d~~~~~---------------~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 235 DAKTYE---------------VLDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred ECCCCc---------------EEEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 987432 22211 123468899999999999886 469999999998863
No 139
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=9.4e-22 Score=223.66 Aligned_cols=232 Identities=22% Similarity=0.437 Sum_probs=209.9
Q ss_pred ecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEE--ecCCCEEEEEe
Q 001042 823 IRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDRGKVVSGS 900 (1178)
Q Consensus 823 l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~--s~d~~~l~sgs 900 (1178)
+..|...|.++..- ..++.+++|+.|..+-+|.+. ....+..+.+|..+|-++ +.+...|++|+
T Consensus 24 ~~~hsaav~~lk~~------------~s~r~~~~Gg~~~k~~L~~i~--kp~~i~S~~~hespIeSl~f~~~E~Llaags 89 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIR------------KSSRSLVTGGEDEKVNLWAIG--KPNAITSLTGHESPIESLTFDTSERLLAAGS 89 (825)
T ss_pred hhhhhhhhceeeee------------ccceeeccCCCceeecccccc--CCchhheeeccCCcceeeecCcchhhhcccc
Confidence 44688888888763 678999999999999999976 344445689999999986 67788899999
Q ss_pred CCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEE
Q 001042 901 DDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGIL 979 (1178)
Q Consensus 901 ~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l 979 (1178)
.+|+|++||++.++.++++.+|...+..+.|+ -+.+.+.|+.|+.+++||.+...|...+.+|...+.++.|+|+|+++
T Consensus 90 asgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v 169 (825)
T KOG0267|consen 90 ASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWV 169 (825)
T ss_pred cCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCcee
Confidence 99999999999999999999999999999999 47778899999999999999889999999999999999999999999
Q ss_pred EEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEcCC--EEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecC
Q 001042 980 AAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSS 1057 (1178)
Q Consensus 980 ~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~--~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd 1057 (1178)
+.|+.|..+++||...|+.+..|..|.+.+.++.+++. .+++|+.|+++++||+++.+.+.........|.+.+|+|+
T Consensus 170 ~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~ 249 (825)
T KOG0267|consen 170 ASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPD 249 (825)
T ss_pred eccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCC
Confidence 99999999999999999999999999999999999776 7889999999999999998888888877889999999999
Q ss_pred CCEEEEEeCCC
Q 001042 1058 DRGIITGSSDG 1068 (1178)
Q Consensus 1058 g~~L~sgs~Dg 1068 (1178)
++.+++|....
T Consensus 250 ~~~~~~G~q~s 260 (825)
T KOG0267|consen 250 GKIVLSGEQIS 260 (825)
T ss_pred ceeeecCchhh
Confidence 99999886554
No 140
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=5.3e-20 Score=191.09 Aligned_cols=285 Identities=17% Similarity=0.229 Sum_probs=204.6
Q ss_pred cccccCCcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceE-Ee-cccccceEEEEeee
Q 001042 762 AEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIR-II-RGHAGAITALHCVT 837 (1178)
Q Consensus 762 ~~~~gh~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l-~gH~~~V~~l~fs~ 837 (1178)
..+.||..+|.+++||.||++||++++| ||+|+++.-..... .+++ .+ .+| -+.+.|+
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eH--------------r~~R~nve~dh---pT~V~Fa- 141 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEH--------------RCIRQNVEYDH---PTRVVFA- 141 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhh--------------hHhhccccCCC---ceEEEEC-
Confidence 3458999999999999999999999999 99999986331110 0111 11 134 3667777
Q ss_pred ccceeccccccCCCCEEEE-EeCCCcEEEEcCCCCC--c-ee-------eEeecccccceEEE--ecCCCEEEEEeCCCc
Q 001042 838 KREVWDLVGDREDAGFFIS-GSTDCLVKIWDPSLRG--S-EL-------RATLKGHTRTVRAI--NSDRGKVVSGSDDQS 904 (1178)
Q Consensus 838 ~~~~~~~~~~s~d~~~Las-gs~Dg~I~iWd~~~~~--~-~~-------~~~l~~h~~~V~~~--s~d~~~l~sgs~dg~ 904 (1178)
||-+-++. .-...++++|...... . .. ...-+.|...+..+ .-.+.++++++.|..
T Consensus 142 -----------pDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~ 210 (420)
T KOG2096|consen 142 -----------PDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTK 210 (420)
T ss_pred -----------CCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCc
Confidence 66665544 4445689999754211 1 10 01112345555544 677889999999999
Q ss_pred EEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCC---CC-----eEEEEecCCCCCEEEEEEeCC
Q 001042 905 VLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVR---TD-----TCVATVGRCSSAVLCMEYDDS 975 (1178)
Q Consensus 905 I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~---~~-----~~~~~~~~~~~~I~~l~~sp~ 975 (1178)
|.+|++. |+.+..+......-+..+.+ +|..+++++.---|++|.+- .| ..+..+++|...|...+|+++
T Consensus 211 i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~ 289 (420)
T KOG2096|consen 211 ICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNS 289 (420)
T ss_pred EEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCC
Confidence 9999999 99999988777777788888 67888888888889999863 22 234567899999999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCC-------ceEEEE----ecCCccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCeeeeEe
Q 001042 976 TGILAAGGRDAVANIWDIRAG-------RQMHKF----LGHTKWIRSIRMD--RDTVITGSDDWTARMWSISRGTCDAVL 1042 (1178)
Q Consensus 976 ~~~l~sgs~dg~I~lwD~~~~-------~~~~~~----~~~~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~ 1042 (1178)
.+.+++.+.||++++||+.-. +.++.. ....+....++.+ ++.|+. +....++++..++|+....+
T Consensus 290 S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~-s~gs~l~~~~se~g~~~~~~ 368 (420)
T KOG2096|consen 290 STRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAV-SFGSDLKVFASEDGKDYPEL 368 (420)
T ss_pred cceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEe-ecCCceEEEEcccCccchhH
Confidence 999999999999999997521 122221 1112223345554 445544 44568999999998876666
Q ss_pred c-cCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 001042 1043 A-CHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDG 1078 (1178)
Q Consensus 1043 ~-~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~ 1078 (1178)
. .|...|.+++|+++|+++++++ |..++++.-..|
T Consensus 369 e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ntpg 404 (420)
T KOG2096|consen 369 EDIHSTTISSISYSSDGKYIATCG-DRYVRVIRNTPG 404 (420)
T ss_pred HHhhcCceeeEEecCCCcEEeeec-ceeeeeecCCCc
Confidence 5 5899999999999999999996 777888764444
No 141
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=8.8e-21 Score=217.62 Aligned_cols=285 Identities=17% Similarity=0.314 Sum_probs=223.5
Q ss_pred CcceEEEEecCCCCcccccccc-eeecccccccCCCCCCCCCCCcCCcccccceEEeccc---ccceEEEEeeeccceec
Q 001042 768 GRSWVQSMFSREASSRSHSFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGH---AGAITALHCVTKREVWD 843 (1178)
Q Consensus 768 ~~~i~~~aFSpdg~~las~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH---~~~V~~l~fs~~~~~~~ 843 (1178)
.....+++-.+|-..++.++.. .+|+.+....... .+....++- .-.+..|.|+
T Consensus 39 k~~~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~---------------~~~~~~k~kqn~~~S~~DVkW~------- 96 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGRSLLKLYAINPNDFSE---------------KCNHRFKTKQNKFYSAADVKWG------- 96 (839)
T ss_pred ccccceEeecCCcceeEEecccceeeEeeCcccCCc---------------ceeeecccccceeeehhhcccc-------
Confidence 3456667777998889998888 8888877543211 012222221 1234456665
Q ss_pred cccccCCCCEEEEEeCCCcEEEEcCCCC-CceeeEeecccccceEEE---ecCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 001042 844 LVGDREDAGFFISGSTDCLVKIWDPSLR-GSELRATLKGHTRTVRAI---NSDRGKVVSGSDDQSVLVWDKQTSQLLEEL 919 (1178)
Q Consensus 844 ~~~~s~d~~~Lasgs~Dg~I~iWd~~~~-~~~~~~~l~~h~~~V~~~---s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l 919 (1178)
.-+.++|||++..|.|.+||++.. ..+....+..|+..+.++ +....+|++|+.||+|++||++..+...++
T Consensus 97 ----~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~ 172 (839)
T KOG0269|consen 97 ----QLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTF 172 (839)
T ss_pred ----cchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccc
Confidence 267899999999999999998832 244556889999999976 345688999999999999999999999999
Q ss_pred cCCCCceEEEEEe--CCCeEEEEeCCCeEEEEeCCCC-eEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Q 001042 920 KGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTD-TCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAG 996 (1178)
Q Consensus 920 ~~h~~~V~~l~~~--~~~~l~sgs~dg~V~iwd~~~~-~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~ 996 (1178)
.+....|.++.|+ .++.++++...|.+++||++.. ++...+..|.+.|.|+.|+|++.+||+||.|+.|+|||+.++
T Consensus 173 ~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~ 252 (839)
T KOG0269|consen 173 RSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDS 252 (839)
T ss_pred cccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCC
Confidence 9999999999999 6889999999999999999864 567778899999999999999999999999999999999876
Q ss_pred ceEEEEe-cCCccEEEEEEcCC---EEEEEe--CCCcEEEEEcCCC-eeeeEeccCCCcEEEEEEec-CCCEEEEEeCCC
Q 001042 997 RQMHKFL-GHTKWIRSIRMDRD---TVITGS--DDWTARMWSISRG-TCDAVLACHAGPVQCVEYSS-SDRGIITGSSDG 1068 (1178)
Q Consensus 997 ~~~~~~~-~~~~~v~~l~~~~~---~l~sgs--~dg~I~iwd~~~~-~~~~~~~~h~~~I~~l~~sp-dg~~L~sgs~Dg 1068 (1178)
+.-.... ....++.+++|.|. .|++++ .|..|+|||++.. -+..++..|...++.++|.. |...+.+++.||
T Consensus 253 ~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~ 332 (839)
T KOG0269|consen 253 RAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDG 332 (839)
T ss_pred CccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCcc
Confidence 5432222 34568999999654 677776 5788999999875 45677889999999999965 445688999999
Q ss_pred cEEEEECCCC
Q 001042 1069 LLRFWENDDG 1078 (1178)
Q Consensus 1069 ~I~iwd~~~~ 1078 (1178)
+|..-.++++
T Consensus 333 tv~qh~~kna 342 (839)
T KOG0269|consen 333 TVLQHLFKNA 342 (839)
T ss_pred HHHHhhhhcc
Confidence 8866555543
No 142
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.5e-18 Score=203.33 Aligned_cols=382 Identities=16% Similarity=0.245 Sum_probs=279.9
Q ss_pred CCCCCcccccCCcceEEE-EecCCCCcccccccc-eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEE
Q 001042 757 DDQQPAEASGIGRSWVQS-MFSREASSRSHSFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALH 834 (1178)
Q Consensus 757 ~~~~~~~~~gh~~~i~~~-aFSpdg~~las~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~ 834 (1178)
+.+++..+.| ...+... +||+|++++..+..+ |.|+.+.|+. +++.+.+|..+++.+.
T Consensus 5 ~~~~~~~lgg-~n~~~~~avfSnD~k~l~~~~~~~V~VyS~~Tg~-------------------~i~~l~~~~a~l~s~~ 64 (792)
T KOG1963|consen 5 SGGKPALLGG-RNGNKSPAVFSNDAKFLFLCTGNFVKVYSTATGE-------------------CITSLEDHTAPLTSVI 64 (792)
T ss_pred cccceeeecc-ccceecccccccCCcEEEEeeCCEEEEEecchHh-------------------hhhhcccccCccceee
Confidence 3455565444 4444444 899999999999988 9999999999 8899999999999999
Q ss_pred eeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEee-----------------------------------
Q 001042 835 CVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATL----------------------------------- 879 (1178)
Q Consensus 835 fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l----------------------------------- 879 (1178)
+.|.. +.-.++.+++.||+|++||.... .+.+++
T Consensus 65 ~~~~~---------~~~~~~~~~sl~G~I~vwd~~~~--~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~ 133 (792)
T KOG1963|consen 65 VLPSS---------ENANYLIVCSLDGTIRVWDWSDG--ELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTF 133 (792)
T ss_pred ecCCC---------ccceEEEEEecCccEEEecCCCc--EEEEEEecCCceeEEEechhHhCccceeEeecccceeeeec
Confidence 98531 22367889999999999985411 000000
Q ss_pred --------------------------------------------------------------------ccccc--ceEEE
Q 001042 880 --------------------------------------------------------------------KGHTR--TVRAI 889 (1178)
Q Consensus 880 --------------------------------------------------------------------~~h~~--~V~~~ 889 (1178)
..|.- .+.++
T Consensus 134 s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~ 213 (792)
T KOG1963|consen 134 SKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVAL 213 (792)
T ss_pred ccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEe
Confidence 01222 12356
Q ss_pred ecCCCEEEEEeCCCcEEEEECCC----CcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCC
Q 001042 890 NSDRGKVVSGSDDQSVLVWDKQT----SQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCS 964 (1178)
Q Consensus 890 s~d~~~l~sgs~dg~I~iwd~~t----~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~ 964 (1178)
+|+++++++|..||.|.+|.--. ......+.=|...|.+++|+ +|.++++|+..|.+.+|.+.+++ .+-+..-.
T Consensus 214 spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLg 292 (792)
T KOG1963|consen 214 SPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLG 292 (792)
T ss_pred ccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccC
Confidence 89999999999999999997432 12334566789999999999 89999999999999999999998 55666778
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEec-----------CCccEEEEEEcC--CEEEEEeCCCcEEEE
Q 001042 965 SAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLG-----------HTKWIRSIRMDR--DTVITGSDDWTARMW 1031 (1178)
Q Consensus 965 ~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~-----------~~~~v~~l~~~~--~~l~sgs~dg~I~iw 1031 (1178)
+.|..+.++||+...+....|+.|.+....+.....++.+ ..+-.+.+++++ +.++-.+..|.|.+|
T Consensus 293 s~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~y 372 (792)
T KOG1963|consen 293 SPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFY 372 (792)
T ss_pred CeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEE
Confidence 9999999999999999999999999998866544333322 233455666766 478888899999999
Q ss_pred EcCCCeeeeEecc-----------CCCcEEEEEEecCCCEEEEEe--------CCC--cEEEEECCCCce--EEE-EEec
Q 001042 1032 SISRGTCDAVLAC-----------HAGPVQCVEYSSSDRGIITGS--------SDG--LLRFWENDDGGI--KCV-KNVT 1087 (1178)
Q Consensus 1032 d~~~~~~~~~~~~-----------h~~~I~~l~~spdg~~L~sgs--------~Dg--~I~iwd~~~~~~--~~~-~~~~ 1087 (1178)
|+-+.+.+..+.. +.-.+++++.+-.|.+++|+- .|| .+++|-...... ... ....
T Consensus 373 dl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~ 452 (792)
T KOG1963|consen 373 DLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINN 452 (792)
T ss_pred eccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEec
Confidence 9988776655431 123577888888899998874 233 478897664421 222 2223
Q ss_pred ccCCcEEEE---ec-CCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEE
Q 001042 1088 IHSSAILSI---NA-GDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSG 1163 (1178)
Q Consensus 1088 ~h~~~i~~i---s~-dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~ 1163 (1178)
.|...+.+. ++ .....++++.||.+++|-.....- ....-..|.+...-.-|..++++++|+.||..|+ +
T Consensus 453 PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n-----~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla-~ 526 (792)
T KOG1963|consen 453 PHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSN-----IYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLA-V 526 (792)
T ss_pred CCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccc-----cCcCccceEEeeeeccccCcccchhhcCCCcEEE-E
Confidence 466554333 23 334899999999999999853211 1223346888877767899999999999997665 5
Q ss_pred eCCCcEEEEECCC
Q 001042 1164 GRNGLLRLWEATI 1176 (1178)
Q Consensus 1164 s~Dg~V~IWdv~t 1176 (1178)
+.|++|.+||..+
T Consensus 527 s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 527 SFDDTITIWDYDT 539 (792)
T ss_pred ecCCEEEEecCCC
Confidence 5899999999876
No 143
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=2.2e-20 Score=214.42 Aligned_cols=267 Identities=16% Similarity=0.256 Sum_probs=210.6
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCCceeeEeec-ccccce-E-----EE-ecCCCEEEEEeCCCcEEEEECCC---CcEEE
Q 001042 849 EDAGFFISGSTDCLVKIWDPSLRGSELRATLK-GHTRTV-R-----AI-NSDRGKVVSGSDDQSVLVWDKQT---SQLLE 917 (1178)
Q Consensus 849 ~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~-~h~~~V-~-----~~-s~d~~~l~sgs~dg~I~iwd~~t---~~~~~ 917 (1178)
++-..++.++.. .++|+.++........... +..... . .+ .-+.++||+++..|.|.+||+.. .+.+.
T Consensus 49 r~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~ 127 (839)
T KOG0269|consen 49 RDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLT 127 (839)
T ss_pred CCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCccccchhhh
Confidence 677777777754 6788876633332221111 111111 1 12 45678999999999999999987 56667
Q ss_pred EecCCCCceEEEEEe--CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECC
Q 001042 918 ELKGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDD-STGILAAGGRDAVANIWDIR 994 (1178)
Q Consensus 918 ~l~~h~~~V~~l~~~--~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp-~~~~l~sgs~dg~I~lwD~~ 994 (1178)
.+..|...++++.|+ ..+++++|+.||+|++||++..+...++.+....|+.+.|+| .+..++++...|.+.+||++
T Consensus 128 ~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlR 207 (839)
T KOG0269|consen 128 VFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLR 207 (839)
T ss_pred HhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeecc
Confidence 889999999999999 678999999999999999999999999988889999999999 67889999999999999999
Q ss_pred CC-ceEEEEecCCccEEEEEEcCC--EEEEEeCCCcEEEEEcCCCee--eeEeccCCCcEEEEEEecCCCE-EEEEe--C
Q 001042 995 AG-RQMHKFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRGTC--DAVLACHAGPVQCVEYSSSDRG-IITGS--S 1066 (1178)
Q Consensus 995 ~~-~~~~~~~~~~~~v~~l~~~~~--~l~sgs~dg~I~iwd~~~~~~--~~~~~~h~~~I~~l~~spdg~~-L~sgs--~ 1066 (1178)
.. ++...+..|.++|.|+.|+|+ +||+|+.|+.|+|||+.+++. +.++. ...+|.++.|-|...+ |++++ .
T Consensus 208 qp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~ 286 (839)
T KOG0269|consen 208 QPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVV 286 (839)
T ss_pred CchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccc
Confidence 75 457788899999999999776 999999999999999986543 33333 3568999999998766 55555 5
Q ss_pred CCcEEEEECCCCceEEEEEecccCCcEEEEe---cCCCEEEEEeCCCcEEEEEcC
Q 001042 1067 DGLLRFWENDDGGIKCVKNVTIHSSAILSIN---AGDHWLGIGAADNSMSLFHRP 1118 (1178)
Q Consensus 1067 Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is---~dg~~Lasgs~Dg~I~iwd~~ 1118 (1178)
|-.|+|||++..- .+..++..|...+..+. .|...+.+++.||+|..-..+
T Consensus 287 dtsV~VWDvrRPY-IP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 287 DTSVHVWDVRRPY-IPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFK 340 (839)
T ss_pred cceEEEEeecccc-ccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhh
Confidence 7889999998653 56677888998887774 445788999999988765544
No 144
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=1.1e-19 Score=202.76 Aligned_cols=318 Identities=17% Similarity=0.222 Sum_probs=233.1
Q ss_pred ceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceE--EEecCCC--
Q 001042 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRG-- 894 (1178)
Q Consensus 819 ~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~--~~s~d~~-- 894 (1178)
+-..++||++.|.+|... +.|.+||+|+.||+|+||.+. ++.++.+..- .+.|. +|+|.++
T Consensus 392 ~~lvyrGHtg~Vr~iSvd------------p~G~wlasGsdDGtvriWEi~--TgRcvr~~~~-d~~I~~vaw~P~~~~~ 456 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVD------------PSGEWLASGSDDGTVRIWEIA--TGRCVRTVQF-DSEIRSVAWNPLSDLC 456 (733)
T ss_pred eeeeEeccCCeEEEEEec------------CCcceeeecCCCCcEEEEEee--cceEEEEEee-cceeEEEEecCCCCce
Confidence 556789999999999987 889999999999999999987 3333343331 22444 4566554
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEeCCCeEEEE----eCCCeEEEEeCCCC----eEEEEecCCCCC
Q 001042 895 KVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTA----SHDGTVKMWDVRTD----TCVATVGRCSSA 966 (1178)
Q Consensus 895 ~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~~~~~l~sg----s~dg~V~iwd~~~~----~~~~~~~~~~~~ 966 (1178)
.||++-. +.+.|-+..-|..+..-. ....|+++ ..++.+..|.-... .-+...-.|...
T Consensus 457 vLAvA~~-~~~~ivnp~~G~~~e~~~------------t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~ 523 (733)
T KOG0650|consen 457 VLAVAVG-ECVLIVNPIFGDRLEVGP------------TKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKS 523 (733)
T ss_pred eEEEEec-CceEEeCccccchhhhcc------------hhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCc
Confidence 3444444 446666655442221111 01112222 23557778865421 113344467889
Q ss_pred EEEEEEeCCCCEEEEEeCC---CeEEEEECCCCceEEEEecCCccEEEEEEcCC--EEEEEeCCCcEEEEEcCCCeeeeE
Q 001042 967 VLCMEYDDSTGILAAGGRD---AVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRGTCDAV 1041 (1178)
Q Consensus 967 I~~l~~sp~~~~l~sgs~d---g~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~--~l~sgs~dg~I~iwd~~~~~~~~~ 1041 (1178)
|..+.|+..|.+|++...+ ..|.|+++...+...-|+...+.|.++.|++. ++++++. ..|++||+.....++.
T Consensus 524 i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKk 602 (733)
T KOG0650|consen 524 IRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKK 602 (733)
T ss_pred cceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHH
Confidence 9999999999999988653 57889999887777777778889999999876 6666654 4799999999888888
Q ss_pred eccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE--ecCCCEEEEEeCCCcEEEEEcCC
Q 001042 1042 LACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQ 1119 (1178)
Q Consensus 1042 ~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~dg~~Lasgs~Dg~I~iwd~~~ 1119 (1178)
+......|..++.+|.|.-|+.|+.|+.+..+|++-+. +..+++..|...+.++ ++.-.++++|+.||++.|+.-.-
T Consensus 603 L~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlss-kPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~V 681 (733)
T KOG0650|consen 603 LLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSS-KPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMV 681 (733)
T ss_pred HhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCc-chhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeee
Confidence 88778899999999999999999999999999998653 6777888899998877 45667899999999999997421
Q ss_pred CccccccCCCCCccceeEeeccCCCccc----EEEEEEcCCCCEEEEEeCCCcEEEE
Q 001042 1120 ERLGGFSGTGSKMSGWQLYRTPQKTVAV----VRCIASDLERKRICSGGRNGLLRLW 1172 (1178)
Q Consensus 1120 ~~~~~~~~~g~~~~~~~~~~~~~~h~~~----V~~lafspdg~~Las~s~Dg~V~IW 1172 (1178)
- .+-....-.-.+..+++|... |.++.|+|...+|.|+|.||+|++|
T Consensus 682 Y------~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 682 Y------NDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred e------hhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 0 000000112456777888766 9999999999999999999999999
No 145
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=2.1e-21 Score=220.92 Aligned_cols=249 Identities=21% Similarity=0.434 Sum_probs=217.0
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEe
Q 001042 895 KVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYD 973 (1178)
Q Consensus 895 ~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~s 973 (1178)
.++.+..+-.+++||.+ .+..|...+.++..- .+..+++|+.|..+-+|.+..-..+..+.+|..+|.++.|+
T Consensus 6 ~~m~~~~~t~Lr~~~~~------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~ 79 (825)
T KOG0267|consen 6 FLMKTKRATKLRVWDTR------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFD 79 (825)
T ss_pred ccceeeeeeccccccch------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecC
Confidence 34455555667788764 334577778777765 56778999999999999998877888889999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEcCC--EEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEE
Q 001042 974 DSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRGTCDAVLACHAGPVQC 1051 (1178)
Q Consensus 974 p~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~--~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~ 1051 (1178)
++..+|++|+.+|+|++||+..++.++++.+|...+.++.|++- +.+.|+.|+.+.+||.+...|.+.+.+|...+..
T Consensus 80 ~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~ 159 (825)
T KOG0267|consen 80 TSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDV 159 (825)
T ss_pred cchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEE
Confidence 99999999999999999999999999999999999999999765 7889999999999999988999999999999999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE--ecCCCEEEEEeCCCcEEEEEcCCCccccccCCC
Q 001042 1052 VEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTG 1129 (1178)
Q Consensus 1052 l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g 1129 (1178)
+.|+|+|++++.|+.|.++++||...| .....+.+|.+.+.++ +|..-++++||.|+++++||+++-
T Consensus 160 l~lsP~Gr~v~~g~ed~tvki~d~~ag--k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf--------- 228 (825)
T KOG0267|consen 160 LRLSPDGRWVASGGEDNTVKIWDLTAG--KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF--------- 228 (825)
T ss_pred EeecCCCceeeccCCcceeeeeccccc--ccccccccccccccccccCchhhhhccCCCCceeeeecccee---------
Confidence 999999999999999999999999998 7788889999998777 688889999999999999999743
Q ss_pred CCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCC
Q 001042 1130 SKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRN 1166 (1178)
Q Consensus 1130 ~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~D 1166 (1178)
+.+.........|.+++|+|+|+.+++|..+
T Consensus 229 ------e~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 229 ------EVISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred ------EEeeccCCccCCceeeeecCCceeeecCchh
Confidence 4444445557789999999999999888654
No 146
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.85 E-value=4.3e-18 Score=193.27 Aligned_cols=263 Identities=12% Similarity=0.132 Sum_probs=191.1
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCceeeEeecccccce-EEEecCCCEE-EEEeCCCcEEEEECCCCcEEEEecCCCCceEE
Q 001042 851 AGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTV-RAINSDRGKV-VSGSDDQSVLVWDKQTSQLLEELKGHDAQVSC 928 (1178)
Q Consensus 851 ~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V-~~~s~d~~~l-~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~ 928 (1178)
+..+++++.||.|++||.. +.+....+..+.... .+++++++.+ ++++.++.|++||..+++....+..+.. +..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~--t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~ 77 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTA--TLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PEL 77 (300)
T ss_pred CcEEEEecCCCEEEEEECC--CCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccE
Confidence 3578899999999999976 344556666554322 3678999876 5667889999999999988877765544 456
Q ss_pred EEEe-CCCeEEE-EeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCC-eEEEEECCCCceEEEEecC
Q 001042 929 VRML-SGERVLT-ASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDA-VANIWDIRAGRQMHKFLGH 1005 (1178)
Q Consensus 929 l~~~-~~~~l~s-gs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg-~I~lwD~~~~~~~~~~~~~ 1005 (1178)
++++ +++.+++ ++.++.+++||+.+++.+..+.. ...+.+++|+|+++.+++++.++ .+..||.++++.......
T Consensus 78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~- 155 (300)
T TIGR03866 78 FALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV- 155 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-
Confidence 7787 5665654 45689999999999887777643 33468899999999999988765 567789988877655432
Q ss_pred CccEEEEEE--cCCEEE-EEeCCCcEEEEEcCCCeeeeEeccCC-----C--cEEEEEEecCCCEEEE-EeCCCcEEEEE
Q 001042 1006 TKWIRSIRM--DRDTVI-TGSDDWTARMWSISRGTCDAVLACHA-----G--PVQCVEYSSSDRGIIT-GSSDGLLRFWE 1074 (1178)
Q Consensus 1006 ~~~v~~l~~--~~~~l~-sgs~dg~I~iwd~~~~~~~~~~~~h~-----~--~I~~l~~spdg~~L~s-gs~Dg~I~iwd 1074 (1178)
...+.++++ ++..++ ++..++.|++||+++++.+..+..+. . ....++|+|+++++++ .+.++.+.+||
T Consensus 156 ~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d 235 (300)
T TIGR03866 156 DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVD 235 (300)
T ss_pred CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEE
Confidence 234456777 455664 44569999999999998776654321 1 2356889999998554 45567899999
Q ss_pred CCCCceEEEEEe-cccCCcEEEEecCCCEEEEE-eCCCcEEEEEcCCC
Q 001042 1075 NDDGGIKCVKNV-TIHSSAILSINAGDHWLGIG-AADNSMSLFHRPQE 1120 (1178)
Q Consensus 1075 ~~~~~~~~~~~~-~~h~~~i~~is~dg~~Lasg-s~Dg~I~iwd~~~~ 1120 (1178)
..+++. .... .++.....+++|+|++|+++ +.+|.|.+||+.++
T Consensus 236 ~~~~~~--~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~ 281 (300)
T TIGR03866 236 AKTYEV--LDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL 281 (300)
T ss_pred CCCCcE--EEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 988743 3322 23434445668999999886 46899999999844
No 147
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.84 E-value=3.5e-17 Score=193.14 Aligned_cols=366 Identities=26% Similarity=0.486 Sum_probs=278.7
Q ss_pred cccccCCcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccc-cceEEEEeeec
Q 001042 762 AEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHA-GAITALHCVTK 838 (1178)
Q Consensus 762 ~~~~gh~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~-~~V~~l~fs~~ 838 (1178)
....+|...+..+.|.+++..++.++.+ +.+|+...+.. .+..+.++. ..+..+.+.
T Consensus 59 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~-- 118 (466)
T COG2319 59 LLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEK------------------LIKSLEGLHDSSVSKLALS-- 118 (466)
T ss_pred heeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCce------------------eEEEEeccCCCceeeEEEE--
Confidence 3567888899999999999999988866 99999886541 345565544 366666661
Q ss_pred cceeccccccCCCC-EEEEEeC-CCcEEEEcCCCCCceeeEeecccccceE--EEecCCCEEEEEeC-CCcEEEEECCCC
Q 001042 839 REVWDLVGDREDAG-FFISGST-DCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKVVSGSD-DQSVLVWDKQTS 913 (1178)
Q Consensus 839 ~~~~~~~~~s~d~~-~Lasgs~-Dg~I~iWd~~~~~~~~~~~l~~h~~~V~--~~s~d~~~l~sgs~-dg~I~iwd~~t~ 913 (1178)
++++. .++..+. |+.+++||... .......+..|...|. ++++++..+++++. |+.+++|+..++
T Consensus 119 ---------~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (466)
T COG2319 119 ---------SPDGNSILLASSSLDGTVKLWDLST-PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG 188 (466)
T ss_pred ---------CCCcceEEeccCCCCccEEEEEecC-CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC
Confidence 16666 5555444 99999999762 2566678888998888 56899998888886 999999999998
Q ss_pred cEEEEecCCCCceEEEEEe-CCC-eEEEEeCCCeEEEEeCCCCeEEE-EecCCCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 001042 914 QLLEELKGHDAQVSCVRML-SGE-RVLTASHDGTVKMWDVRTDTCVA-TVGRCSSAVLCMEYDDSTGILAAGGRDAVANI 990 (1178)
Q Consensus 914 ~~~~~l~~h~~~V~~l~~~-~~~-~l~sgs~dg~V~iwd~~~~~~~~-~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~l 990 (1178)
..+..+.+|...|.+++|+ ++. .+++++.|+.|++||...+.... .+..|.... ...|++++..+++++.|+.+++
T Consensus 189 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~ 267 (466)
T COG2319 189 KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRL 267 (466)
T ss_pred ceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEE
Confidence 9999999999999999999 444 44455899999999998888877 677777765 4489999988999999999999
Q ss_pred EECCCCce-EEEEecCCccEEEEEEcC--CEEEEEeCCCcEEEEEcCCCeeeeEec--cCCCcEEEEEEecCCCEEEEE-
Q 001042 991 WDIRAGRQ-MHKFLGHTKWIRSIRMDR--DTVITGSDDWTARMWSISRGTCDAVLA--CHAGPVQCVEYSSSDRGIITG- 1064 (1178)
Q Consensus 991 wD~~~~~~-~~~~~~~~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~--~h~~~I~~l~~spdg~~L~sg- 1064 (1178)
||.+.... ...+.+|...+.++.+.+ ..+++++.|+.+.+||..+........ .|...+..+.+.+++..++.+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (466)
T COG2319 268 WDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGG 347 (466)
T ss_pred eeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEee
Confidence 99997765 444467888999999966 577778888999999998887766665 788889999994332556555
Q ss_pred eCCCcEEEEECCCCceEEEEEecccCC-cEEEEecCCCEEEE-EeCCCcEEEEEcCCCccccccCCCCCccceeEeeccC
Q 001042 1065 SSDGLLRFWENDDGGIKCVKNVTIHSS-AILSINAGDHWLGI-GAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQ 1142 (1178)
Q Consensus 1065 s~Dg~I~iwd~~~~~~~~~~~~~~h~~-~i~~is~dg~~Las-gs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~ 1142 (1178)
..|+.+.+|+..... .......... ....++++ ..... +..++.+.+|+..... ......
T Consensus 348 ~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~ 409 (466)
T COG2319 348 SDDGTIRLWDLRTGK--PLKTLEGHSNVLSVSFSPD-GRVVSSGSTDGTVRLWDLSTGS---------------LLRNLD 409 (466)
T ss_pred cCCCcEEeeecCCCc--eeEEecCCceEEEEEECCC-CCEEEEecCCCceEEEecccCe---------------eeeecc
Confidence 688999999998874 3333333322 22333443 34443 7889999999997432 111111
Q ss_pred CCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001042 1143 KTVAVVRCIASDLERKRICSGGRNGLLRLWEATI 1176 (1178)
Q Consensus 1143 ~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~t 1176 (1178)
.+...+....+++++..+++++.++.+++|+..+
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 410 GHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 2216789999999999999999999999999864
No 148
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=5.3e-19 Score=183.50 Aligned_cols=255 Identities=19% Similarity=0.314 Sum_probs=196.7
Q ss_pred cCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCC----eEEEEecCCCCCEEEEEEeC--CCCEEEEEeCCCeEEEEE
Q 001042 920 KGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTD----TCVATVGRCSSAVLCMEYDD--STGILAAGGRDAVANIWD 992 (1178)
Q Consensus 920 ~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~----~~~~~~~~~~~~I~~l~~sp--~~~~l~sgs~dg~I~lwD 992 (1178)
.+|.+-|+++.|. .|.++++|+.|++|+|||.+.. .+....+.|.+.|..+.|.+ -|+.+|+++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 4688899999999 8999999999999999996543 45667788999999999965 689999999999999998
Q ss_pred CC---------CCceEEEEecCCccEEEEEEcCC----EEEEEeCCCcEEEEEcCCC------eeeeEec-------cCC
Q 001042 993 IR---------AGRQMHKFLGHTKWIRSIRMDRD----TVITGSDDWTARMWSISRG------TCDAVLA-------CHA 1046 (1178)
Q Consensus 993 ~~---------~~~~~~~~~~~~~~v~~l~~~~~----~l~sgs~dg~I~iwd~~~~------~~~~~~~-------~h~ 1046 (1178)
-. ......++......|+++.|.+. .+++++.||.+|||+.-.- .....++ .+.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 52 11234556677889999999665 7999999999999986543 2222232 356
Q ss_pred CcEEEEEEecC---CCEEEEEeCC-----CcEEEEECCCC--ceEEEEEecccCCcEEEEe--cC----CCEEEEEeCCC
Q 001042 1047 GPVQCVEYSSS---DRGIITGSSD-----GLLRFWENDDG--GIKCVKNVTIHSSAILSIN--AG----DHWLGIGAADN 1110 (1178)
Q Consensus 1047 ~~I~~l~~spd---g~~L~sgs~D-----g~I~iwd~~~~--~~~~~~~~~~h~~~i~~is--~d----g~~Lasgs~Dg 1110 (1178)
.+..|+.|+|. ..+|+.|+.+ +.+.||....+ +...+..+.+|..+|.+++ |+ -..||+++.||
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg 249 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG 249 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence 67889999975 3568888755 47899987655 4556677889999998884 43 35899999999
Q ss_pred cEEEEEcCCCccccc---cCCCCCcc--ceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001042 1111 SMSLFHRPQERLGGF---SGTGSKMS--GWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEAT 1175 (1178)
Q Consensus 1111 ~I~iwd~~~~~~~~~---~~~g~~~~--~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~ 1175 (1178)
|+||++...+-... ...+..+. ..+.+..+.+|.+.|+.+.|+-.|..|+|.|.||+||+|...
T Consensus 250 -v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 250 -VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred -EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 99999974221000 00111111 235667789999999999999999999999999999999864
No 149
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2.1e-19 Score=195.48 Aligned_cols=279 Identities=14% Similarity=0.202 Sum_probs=229.7
Q ss_pred CcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceeccc
Q 001042 768 GRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLV 845 (1178)
Q Consensus 768 ~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~ 845 (1178)
+++|.++.|+|....+.+++.| ++++-+++... ..++.+.--..+|.+.+|+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N-----------------~~lqS~~l~~fPi~~a~f~--------- 266 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN-----------------PKLQSIHLEKFPIQKAEFA--------- 266 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccC-----------------hhheeeeeccCccceeeec---------
Confidence 5789999999999999999999 99999996552 1466666667888888887
Q ss_pred cccCCCC-EEEEEeCCCcEEEEcCCCCCceeeEeecccccceE---EEecCCCEEEEEeCCCcEEEEECCCCcEEEEecC
Q 001042 846 GDREDAG-FFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR---AINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKG 921 (1178)
Q Consensus 846 ~~s~d~~-~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~---~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~ 921 (1178)
|+|. .+++++....++.||+.......+..+.++..... .+++++++|+..|..|.|.+....+++.+..++
T Consensus 267 ---p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K- 342 (514)
T KOG2055|consen 267 ---PNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK- 342 (514)
T ss_pred ---CCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-
Confidence 7888 89999999999999988555555566666664433 569999999999999999999999999998887
Q ss_pred CCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCC-CCEEEEEEeCCCCEEEEEeCCCeEEEEECCC----
Q 001042 922 HDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCS-SAVLCMEYDDSTGILAAGGRDAVANIWDIRA---- 995 (1178)
Q Consensus 922 h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~-~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~---- 995 (1178)
-.+.|..++|+ ++..+++++.+|.|.+||+++..+++.+.... -.-++++.++++.++|+|+..|.|.|||..+
T Consensus 343 ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s 422 (514)
T KOG2055|consen 343 IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAS 422 (514)
T ss_pred eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhcc
Confidence 46789999998 88899999999999999999999988875432 2346788889999999999999999999653
Q ss_pred --CceEEEEecCCccEEEEEEcCC--EEEEEe--CCCcEEEEEcCCCeeeeEecc---CCCcEEEEEEecCCCEEEEEeC
Q 001042 996 --GRQMHKFLGHTKWIRSIRMDRD--TVITGS--DDWTARMWSISRGTCDAVLAC---HAGPVQCVEYSSSDRGIITGSS 1066 (1178)
Q Consensus 996 --~~~~~~~~~~~~~v~~l~~~~~--~l~sgs--~dg~I~iwd~~~~~~~~~~~~---h~~~I~~l~~spdg~~L~sgs~ 1066 (1178)
.+++..+..-...|++++|+++ .|+.+| .+..+++-.+.+.+....+.. .-+.|+|++|||.|.+++.|..
T Consensus 423 ~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe 502 (514)
T KOG2055|consen 423 TNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNE 502 (514)
T ss_pred CCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecC
Confidence 4567777777788999999765 555554 567899988877666555543 2356999999999999999999
Q ss_pred CCcEEEEECC
Q 001042 1067 DGLLRFWEND 1076 (1178)
Q Consensus 1067 Dg~I~iwd~~ 1076 (1178)
+|.+.+|.+.
T Consensus 503 ~grv~l~kL~ 512 (514)
T KOG2055|consen 503 AGRVHLFKLH 512 (514)
T ss_pred CCceeeEeec
Confidence 9999999874
No 150
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.84 E-value=1e-19 Score=198.57 Aligned_cols=285 Identities=15% Similarity=0.202 Sum_probs=219.6
Q ss_pred cccccccceeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceeccccccCCCCEEE--EEeC
Q 001042 782 SRSHSFSRVRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFI--SGST 859 (1178)
Q Consensus 782 ~las~~~dI~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~La--sgs~ 859 (1178)
.+|++++++++||+....... +.-.... .-.+.+++|. . .++|+ +.+.
T Consensus 6 ~~aS~gd~~kl~D~s~~~~~~----------------~~~~~t~-~pg~~s~~w~------------~-~n~lvvas~~g 55 (673)
T KOG4378|consen 6 HVASTGDKTKLSDFSDLETKS----------------EYVHQTA-EPGDFSFNWQ------------R-RNFLVVASMAG 55 (673)
T ss_pred eeeccCCceEEeecccccCcc----------------ccccCCC-CCcceeeecc------------c-cceEEEeecCC
Confidence 456666669999998655211 1111111 1238888886 2 33344 4456
Q ss_pred CCcEEEEcCCCCC--ceeeEeecccccceEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCe
Q 001042 860 DCLVKIWDPSLRG--SELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGER 936 (1178)
Q Consensus 860 Dg~I~iWd~~~~~--~~~~~~l~~h~~~V~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~ 936 (1178)
|..|++|.-.... -.......+....+.+......++++|+..+.|+|||++...+.+.+++|...|+++.++ .+.+
T Consensus 56 dk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~Dey 135 (673)
T KOG4378|consen 56 DKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEY 135 (673)
T ss_pred ceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcce
Confidence 8899999854221 123334444444443344556899999999999999999888888899999999999999 7889
Q ss_pred EEEEeCCCeEEEEeCCCCeEEEEecCC-CCCEEEEEEeCCCCE-EEEEeCCCeEEEEECCCCceEEEE-ecCCccEEEEE
Q 001042 937 VLTASHDGTVKMWDVRTDTCVATVGRC-SSAVLCMEYDDSTGI-LAAGGRDAVANIWDIRAGRQMHKF-LGHTKWIRSIR 1013 (1178)
Q Consensus 937 l~sgs~dg~V~iwd~~~~~~~~~~~~~-~~~I~~l~~sp~~~~-l~sgs~dg~I~lwD~~~~~~~~~~-~~~~~~v~~l~ 1013 (1178)
|++++..|.|.+..+.++.....+... ...|+-+.|++..+. |.+++.+|.|.+||+....++..+ ..|..+...|+
T Consensus 136 iAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gic 215 (673)
T KOG4378|consen 136 IASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGIC 215 (673)
T ss_pred eEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcce
Confidence 999999999999999999887777655 445668999997664 567889999999999887776554 57889999999
Q ss_pred EcC---CEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccC
Q 001042 1014 MDR---DTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHS 1090 (1178)
Q Consensus 1014 ~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~ 1090 (1178)
|++ ..+++.+.|..|.+||.+..+....+. ...+.+.++|+++|.+|++|+..|.|..||++..+ .++.....|.
T Consensus 216 fspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k-~Pv~v~sah~ 293 (673)
T KOG4378|consen 216 FSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK-APVAVRSAHD 293 (673)
T ss_pred ecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCC-CCceEeeecc
Confidence 954 389999999999999999877666665 46789999999999999999999999999998654 6788888899
Q ss_pred CcEEEEec
Q 001042 1091 SAILSINA 1098 (1178)
Q Consensus 1091 ~~i~~is~ 1098 (1178)
..|.+++.
T Consensus 294 ~sVt~vaf 301 (673)
T KOG4378|consen 294 ASVTRVAF 301 (673)
T ss_pred cceeEEEe
Confidence 99988853
No 151
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.83 E-value=4.1e-19 Score=182.70 Aligned_cols=293 Identities=21% Similarity=0.324 Sum_probs=218.3
Q ss_pred ccCCcceEEEEecC-CCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccce
Q 001042 765 SGIGRSWVQSMFSR-EASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREV 841 (1178)
Q Consensus 765 ~gh~~~i~~~aFSp-dg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~ 841 (1178)
..|+++|..+...+ .|+++.+|+.| |-+||++...... ...... ...-.--...-.+|.-.|.++.|-|
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e---~s~li~-k~~c~v~~~h~~~Hky~iss~~WyP---- 111 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYE---ASGLIA-KHKCIVAKQHENGHKYAISSAIWYP---- 111 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchh---hcccee-heeeeccccCCccceeeeeeeEEee----
Confidence 45778899998877 48999999999 9999998654100 000000 0000001223458999999999987
Q ss_pred eccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceE--EEec---CCCEEEEEeCCCcEEEEECCCCcEE
Q 001042 842 WDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR--AINS---DRGKVVSGSDDQSVLVWDKQTSQLL 916 (1178)
Q Consensus 842 ~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~--~~s~---d~~~l~sgs~dg~I~iwd~~t~~~~ 916 (1178)
.|..++.+++-|.++++||.++ .+....++ -.+.|. +++| ....+|+|..|-.|++-|+.+|...
T Consensus 112 -------~DtGmFtssSFDhtlKVWDtnT--lQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s 181 (397)
T KOG4283|consen 112 -------IDTGMFTSSSFDHTLKVWDTNT--LQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS 181 (397)
T ss_pred -------ecCceeecccccceEEEeeccc--ceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcce
Confidence 7888999999999999999763 32222332 223344 3443 3457888999999999999999999
Q ss_pred EEecCCCCceEEEEEeC--CCeEEEEeCCCeEEEEeCCCC-eEEEEe--------------cCCCCCEEEEEEeCCCCEE
Q 001042 917 EELKGHDAQVSCVRMLS--GERVLTASHDGTVKMWDVRTD-TCVATV--------------GRCSSAVLCMEYDDSTGIL 979 (1178)
Q Consensus 917 ~~l~~h~~~V~~l~~~~--~~~l~sgs~dg~V~iwd~~~~-~~~~~~--------------~~~~~~I~~l~~sp~~~~l 979 (1178)
..+.+|.+.|.++.|++ +-.+++|+.||.|++||++.. .+...+ ..|.+.+..++|+.++.++
T Consensus 182 H~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l 261 (397)
T KOG4283|consen 182 HTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYL 261 (397)
T ss_pred eeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhh
Confidence 99999999999999994 446889999999999999764 333332 2456789999999999999
Q ss_pred EEEeCCCeEEEEECCCCceEEEEec---CCc----cEEEEEEcCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEE
Q 001042 980 AAGGRDAVANIWDIRAGRQMHKFLG---HTK----WIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCV 1052 (1178)
Q Consensus 980 ~sgs~dg~I~lwD~~~~~~~~~~~~---~~~----~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l 1052 (1178)
++.+.|..+++|+..+|+....-.+ |+. .+..-+.+.+.++---.++.+.++++-.+..+..+..|-..|.|.
T Consensus 262 ~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~ 341 (397)
T KOG4283|consen 262 ASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCA 341 (397)
T ss_pred hhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEE
Confidence 9999999999999988764322111 111 111112234445555566899999999999999999998899999
Q ss_pred EEecCCCEEEEEeCCCcEEEEEC
Q 001042 1053 EYSSSDRGIITGSSDGLLRFWEN 1075 (1178)
Q Consensus 1053 ~~spdg~~L~sgs~Dg~I~iwd~ 1075 (1178)
++-|+=+...+|..|+.|..|..
T Consensus 342 ~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 342 AYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred eecCchhhhhccccCCccccccc
Confidence 99999999999999999999976
No 152
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.83 E-value=4.4e-19 Score=199.70 Aligned_cols=320 Identities=16% Similarity=0.217 Sum_probs=220.3
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCCce----eeEeecccccceEEE--ecCCCEEEEEeCCCcEEEEECCCCcEEEE--ec
Q 001042 849 EDAGFFISGSTDCLVKIWDPSLRGSE----LRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQLLEE--LK 920 (1178)
Q Consensus 849 ~d~~~Lasgs~Dg~I~iWd~~~~~~~----~~~~l~~h~~~V~~~--s~d~~~l~sgs~dg~I~iwd~~t~~~~~~--l~ 920 (1178)
.....|+.+.+||.|.++|....... .......|...|..+ .|....|++++.|.+++.||+++++++.. +.
T Consensus 62 n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~ 141 (720)
T KOG0321|consen 62 NKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNL 141 (720)
T ss_pred CccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeec
Confidence 45678999999999999996532222 124556799999865 57667899999999999999999998876 88
Q ss_pred CCCCceEEEEEe--CCCeEEEEeCCCeEEEEeCCCCe---------------------------EEEEecCCCCCEEE--
Q 001042 921 GHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTDT---------------------------CVATVGRCSSAVLC-- 969 (1178)
Q Consensus 921 ~h~~~V~~l~~~--~~~~l~sgs~dg~V~iwd~~~~~---------------------------~~~~~~~~~~~I~~-- 969 (1178)
+|.+.|.+++|. +...|++|+.||.|.|||++-.. .+.....+...|.+
T Consensus 142 GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssv 221 (720)
T KOG0321|consen 142 GHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSV 221 (720)
T ss_pred ccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeee
Confidence 999999999998 67789999999999999986322 00111223334444
Q ss_pred -EEEeCCCCEEEEEeC-CCeEEEEECCCCceEEE--------EecC---CccEEEEEEc--CCEEEEEeCCCcEEEEEcC
Q 001042 970 -MEYDDSTGILAAGGR-DAVANIWDIRAGRQMHK--------FLGH---TKWIRSIRMD--RDTVITGSDDWTARMWSIS 1034 (1178)
Q Consensus 970 -l~~sp~~~~l~sgs~-dg~I~lwD~~~~~~~~~--------~~~~---~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~ 1034 (1178)
+.+..|...||+++. |+.|++||++....... +..| .-.+.++..| |.++.+.+.|+.|+.|++.
T Consensus 222 Tvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~ 301 (720)
T KOG0321|consen 222 TVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMR 301 (720)
T ss_pred EEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEecc
Confidence 556677888888887 99999999997654332 2223 2245666664 5788888889999999997
Q ss_pred CC--eeeeEeccCCC--cEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE----ecCCCEEEEE
Q 001042 1035 RG--TCDAVLACHAG--PVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI----NAGDHWLGIG 1106 (1178)
Q Consensus 1035 ~~--~~~~~~~~h~~--~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i----s~dg~~Lasg 1106 (1178)
+- .++..+.++.. .-..-..+|++.++++|+.|....+|.+.+.+ .....+.+|...|+++ ++.+. ++++
T Consensus 302 s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e-~~~~~l~Ght~eVt~V~w~pS~~t~-v~Tc 379 (720)
T KOG0321|consen 302 SLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE-APPALLLGHTREVTTVRWLPSATTP-VATC 379 (720)
T ss_pred ccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc-CChhhhhCcceEEEEEeeccccCCC-ceee
Confidence 64 23444444322 12233568999999999999999999999875 4455677899999887 33444 5566
Q ss_pred eCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001042 1107 AADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWE 1173 (1178)
Q Consensus 1107 s~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWd 1173 (1178)
++|.++++|++..+.-.....+...... .....+++|...+..+.++-.+.+-... .|..++|.
T Consensus 380 SdD~~~kiW~l~~~l~e~~~adk~s~v~-~~~~rfk~~~p~~~nv~ss~~~t~~~pR--~~~~r~~s 443 (720)
T KOG0321|consen 380 SDDFRVKIWRLSNGLEEIYAADKDSIVY-EYSRRFKGHLPQVLNVNSSLRKTYKDPR--EGMNRISS 443 (720)
T ss_pred ccCcceEEEeccCchhhccccccchhhh-hhhhhhhccccccccccccccccccchh--hhcccccc
Confidence 9999999999965432222222211111 2233446676666666666544333222 34444443
No 153
>smart00800 uDENN Domain always found upstream of DENN domain, found in a variety of signalling proteins. The uDENN domain is part of the tripartite DENN domain. It is always found upstream of the DENN domain itself, which is found in a variety of signalling proteins involved in Rab-mediated processes or regulation of MAPKs signalling pathways. The DENN domain is always encircled on both sides by more divergent domains, called uDENN (for upstream DENN) and dDENN (for downstream DENN). The function of the DENN domain remains to date unclear, although it appears to represent a good candidate for a GTP/GDP exchange activity.
Probab=99.82 E-value=2.7e-20 Score=168.46 Aligned_cols=89 Identities=28% Similarity=0.557 Sum_probs=75.6
Q ss_pred CCcceEEEEEeccCCCcccCCCCCCCCCCccccccccccccccCCCCCCCCCCCCCCcccCCCceEEeecCCCCCCCCCC
Q 001042 1 MARVFEYFVVCGIGPEIRTLDGSKGYHGPEYYYLSSVLDQFPPLNHSLYTPPPPQLSTCVLPAGVQFYSSGFDSDDPSTF 80 (1178)
Q Consensus 1 ~~rl~dyfvvvG~~~~~~~~~~~~~~~~~~~~~~p~vl~~yP~~~~~~~~~~~~~v~~fc~P~g~~~~~~~~~~~~~~~~ 80 (1178)
+.||+|||+|||++.+.. +....|+|+||+|||+.++++.+ .++.|++||||+|+.+..+ ..+..
T Consensus 1 ~~rl~d~f~vvg~~~~~~---------~~~~~~~p~il~~yP~~~~~~~~-~~~~i~~FCfP~G~~~~~~-----~~~~~ 65 (89)
T smart00800 1 PSRLFDYFVVVGLDSDTG---------PLGRSYKPEILQRYPEKDEEDFP-LPDSIPLFCFPEGLLFVTQ-----KSSKD 65 (89)
T ss_pred CCcceeEEEEEeCCCCCC---------CcCcccceEEEeECCCCCCccCC-CccCCCeeECCCCeEeecc-----cCCCC
Confidence 579999999999876542 33456899999999999888764 6799999999999998753 24567
Q ss_pred CceeEEEEEcCCCCeEEEEEEEec
Q 001042 81 PRTYPIVLTEGDGSKIYVSCISFR 104 (1178)
Q Consensus 81 p~~f~fvlT~~~g~~~Yg~cl~f~ 104 (1178)
+++|+||||++||+|+||+|++||
T Consensus 66 ~~~f~FvLT~~dG~r~yG~Cl~f~ 89 (89)
T smart00800 66 PQFFSFVLTDIDGSRRYGFCRRFY 89 (89)
T ss_pred CcEEEEEEECCCCCEEEEEEEEeC
Confidence 899999999999999999999986
No 154
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.1e-18 Score=181.19 Aligned_cols=281 Identities=16% Similarity=0.211 Sum_probs=211.5
Q ss_pred EeecccccceEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCe
Q 001042 877 ATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDT 955 (1178)
Q Consensus 877 ~~l~~h~~~V~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~ 955 (1178)
.++.........|++.|.+||+|+.||.|.|||+.|...-+.+.+|..+|++++|+ +|..+++++.|..|.+||+..|.
T Consensus 19 ~tld~~~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs 98 (405)
T KOG1273|consen 19 HTLDNPLAECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS 98 (405)
T ss_pred eeccCCccceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC
Confidence 44443334455689999999999999999999999999888999999999999999 89999999999999999999999
Q ss_pred EEEEecCCCCCEEEEEEeCCCCEEE-EEeCCCeEEEEECCCCceEEEEe--cCCcc----EEEEEE--cCCEEEEEeCCC
Q 001042 956 CVATVGRCSSAVLCMEYDDSTGILA-AGGRDAVANIWDIRAGRQMHKFL--GHTKW----IRSIRM--DRDTVITGSDDW 1026 (1178)
Q Consensus 956 ~~~~~~~~~~~I~~l~~sp~~~~l~-sgs~dg~I~lwD~~~~~~~~~~~--~~~~~----v~~l~~--~~~~l~sgs~dg 1026 (1178)
+++.+ ...++|+...|+|.....+ +.-.+..-.+.++..++ +++- ...+. ..+..+ .|+++++|...|
T Consensus 99 ~l~ri-rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~--h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKG 175 (405)
T KOG1273|consen 99 PLKRI-RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK--HSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKG 175 (405)
T ss_pred ceeEE-EccCccceeeeccccCCeEEEEEecCCcEEEEecCCc--eeeccCCCccccccccccccccCCCCEEEEecCcc
Confidence 98887 4578999999999543333 33233334555554422 2211 11111 112234 577999999999
Q ss_pred cEEEEEcCCCeeeeEeccCC-CcEEEEEEecCCCEEEEEeCCCcEEEEECCCC-------ceEEEEEeccc----CCcEE
Q 001042 1027 TARMWSISRGTCDAVLACHA-GPVQCVEYSSSDRGIITGSSDGLLRFWENDDG-------GIKCVKNVTIH----SSAIL 1094 (1178)
Q Consensus 1027 ~I~iwd~~~~~~~~~~~~h~-~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~-------~~~~~~~~~~h----~~~i~ 1094 (1178)
.+.++|..+-+++..++-.. ..|..+.++..|+.++..++|..||.|++..- +......+..- .-...
T Consensus 176 kllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~c 255 (405)
T KOG1273|consen 176 KLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKC 255 (405)
T ss_pred eEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhhe
Confidence 99999999999998887655 78999999999999999999999999998631 11111111110 11235
Q ss_pred EEecCCCEEEEEeC-CCcEEEEEcCCCccccccCCCCCccceeEeeccCCCc-ccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 001042 1095 SINAGDHWLGIGAA-DNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTV-AVVRCIASDLERKRICSGGRNGLLRLW 1172 (1178)
Q Consensus 1095 ~is~dg~~Lasgs~-Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~-~~V~~lafspdg~~Las~s~Dg~V~IW 1172 (1178)
++|.+|.++++|+. -..++||....+ .+++.+.|.. ....++.|+|-...+++- ..|.|+||
T Consensus 256 cfs~dgeYv~a~s~~aHaLYIWE~~~G---------------sLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw 319 (405)
T KOG1273|consen 256 CFSGDGEYVCAGSARAHALYIWEKSIG---------------SLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIW 319 (405)
T ss_pred eecCCccEEEeccccceeEEEEecCCc---------------ceeeeecCCchhheeecccccceeeeeec-cCCceEEE
Confidence 67889999988774 467999998743 5666666666 467889999999999888 78999999
Q ss_pred ECCC
Q 001042 1173 EATI 1176 (1178)
Q Consensus 1173 dv~t 1176 (1178)
....
T Consensus 320 ~~~~ 323 (405)
T KOG1273|consen 320 AVVQ 323 (405)
T ss_pred Eeec
Confidence 8753
No 155
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.7e-18 Score=202.74 Aligned_cols=267 Identities=18% Similarity=0.247 Sum_probs=212.3
Q ss_pred ccCCcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeecccee
Q 001042 765 SGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVW 842 (1178)
Q Consensus 765 ~gh~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~ 842 (1178)
..|..+...++|.|||+++.+|+.| |++|+...... .-.++.-|...|.+++.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e------------------~P~ti~~~g~~v~~ia~------- 64 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE------------------EPETIDISGELVSSIAC------- 64 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc------------------CCchhhccCceeEEEee-------
Confidence 4677788889999999999999998 99999876521 11223337888988885
Q ss_pred ccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccc--cceEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 001042 843 DLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHT--RTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELK 920 (1178)
Q Consensus 843 ~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~--~~V~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~ 920 (1178)
++.++++|+.+++|.+|.+... +....+...+ ..+.+++-+|+++|.||.|-.|++-+..+......++
T Consensus 65 -------~s~~f~~~s~~~tv~~y~fps~--~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr 135 (933)
T KOG1274|consen 65 -------YSNHFLTGSEQNTVLRYKFPSG--EEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR 135 (933)
T ss_pred -------cccceEEeeccceEEEeeCCCC--CccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeec
Confidence 4679999999999999997632 2222233333 3455778999999999999999999999999999999
Q ss_pred CCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCC--------CCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 001042 921 GHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRC--------SSAVLCMEYDDSTGILAAGGRDAVANIW 991 (1178)
Q Consensus 921 ~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~--------~~~I~~l~~sp~~~~l~sgs~dg~I~lw 991 (1178)
+|.++|.++.|+ .++.+++.+.||.|++||+.++.+..++.+- ...+..++|+|+|..+++...|+.|++|
T Consensus 136 gh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy 215 (933)
T KOG1274|consen 136 GHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVY 215 (933)
T ss_pred ccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEE
Confidence 999999999999 6888999999999999999998877666431 3456789999999999999999999999
Q ss_pred ECCCCceEEEEec--CCccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCC
Q 001042 992 DIRAGRQMHKFLG--HTKWIRSIRMD--RDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSD 1067 (1178)
Q Consensus 992 D~~~~~~~~~~~~--~~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~D 1067 (1178)
+..++.....+.. +...+.+++|+ |.+||+++.||.|.|||+.+... ......|++++|.|+++.+-.-...
T Consensus 216 ~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~ 291 (933)
T KOG1274|consen 216 SRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITAL 291 (933)
T ss_pred ccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeec
Confidence 9999988877754 33448888885 55999999999999999987221 2235679999999988765444333
Q ss_pred Cc
Q 001042 1068 GL 1069 (1178)
Q Consensus 1068 g~ 1069 (1178)
|.
T Consensus 292 g~ 293 (933)
T KOG1274|consen 292 GT 293 (933)
T ss_pred cc
Confidence 33
No 156
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=2.1e-18 Score=179.15 Aligned_cols=241 Identities=19% Similarity=0.324 Sum_probs=189.6
Q ss_pred ecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCC--CceeeEeecccccceEEE---e-cCCCEE
Q 001042 823 IRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLR--GSELRATLKGHTRTVRAI---N-SDRGKV 896 (1178)
Q Consensus 823 l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~--~~~~~~~l~~h~~~V~~~---s-~d~~~l 896 (1178)
-.+|.+-|.++.|- ..|+.+|+|+.|++|+|||.+.. +..+....+.|.+.|..+ + .-|+.+
T Consensus 9 ~s~h~DlihdVs~D------------~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvv 76 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFD------------FYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVV 76 (361)
T ss_pred ccCCcceeeeeeec------------ccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceE
Confidence 35788889999886 88999999999999999996433 345566788999999976 3 458999
Q ss_pred EEEeCCCcEEEEECCC---------CcEEEEecCCCCceEEEEEeC---CCeEEEEeCCCeEEEEeCCCCeE------EE
Q 001042 897 VSGSDDQSVLVWDKQT---------SQLLEELKGHDAQVSCVRMLS---GERVLTASHDGTVKMWDVRTDTC------VA 958 (1178)
Q Consensus 897 ~sgs~dg~I~iwd~~t---------~~~~~~l~~h~~~V~~l~~~~---~~~l~sgs~dg~V~iwd~~~~~~------~~ 958 (1178)
|+++.|+++.||.-.. .....++......|+++.|.+ |-.+++++.||.++||+.-.--. ..
T Consensus 77 A~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~ 156 (361)
T KOG2445|consen 77 ATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQH 156 (361)
T ss_pred EEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhh
Confidence 9999999999997521 123446667788999999984 66799999999999998754321 12
Q ss_pred Eec-------CCCCCEEEEEEeC---CCCEEEEEeCC-----CeEEEEECCCCc----eEEEEecCCccEEEEEEcCC--
Q 001042 959 TVG-------RCSSAVLCMEYDD---STGILAAGGRD-----AVANIWDIRAGR----QMHKFLGHTKWIRSIRMDRD-- 1017 (1178)
Q Consensus 959 ~~~-------~~~~~I~~l~~sp---~~~~l~sgs~d-----g~I~lwD~~~~~----~~~~~~~~~~~v~~l~~~~~-- 1017 (1178)
.+. .+.....|+.|++ ....|++|+.+ +.+.||....+. .+.++.+|..+|++++|.|+
T Consensus 157 Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~G 236 (361)
T KOG2445|consen 157 EIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIG 236 (361)
T ss_pred hhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccC
Confidence 222 3556778999997 34578888765 478888765432 35567799999999999665
Q ss_pred ----EEEEEeCCCcEEEEEcCCC--------------------eeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEE
Q 001042 1018 ----TVITGSDDWTARMWSISRG--------------------TCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFW 1073 (1178)
Q Consensus 1018 ----~l~sgs~dg~I~iwd~~~~--------------------~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iw 1073 (1178)
.+++++.|| |+||.++.. +.+..+..|.+.|+.+.|+-.|..|++.|.||.|++|
T Consensus 237 r~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLW 315 (361)
T KOG2445|consen 237 RSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLW 315 (361)
T ss_pred CceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeeh
Confidence 799999999 999998731 2345567899999999999999999999999999999
Q ss_pred ECC
Q 001042 1074 END 1076 (1178)
Q Consensus 1074 d~~ 1076 (1178)
...
T Consensus 316 kan 318 (361)
T KOG2445|consen 316 KAN 318 (361)
T ss_pred hhh
Confidence 865
No 157
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.82 E-value=2e-18 Score=192.75 Aligned_cols=197 Identities=21% Similarity=0.240 Sum_probs=133.5
Q ss_pred CCcccccCCcceEEEEecCC-CCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEee
Q 001042 760 QPAEASGIGRSWVQSMFSRE-ASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCV 836 (1178)
Q Consensus 760 ~~~~~~gh~~~i~~~aFSpd-g~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs 836 (1178)
..-.+-+|+..|....|||= ..+||+|+.| |+||.+..+-.... ...-..+.+..-.|-++.|+
T Consensus 71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~L-------------Sape~~~g~~~~~vE~l~fH 137 (1012)
T KOG1445|consen 71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKL-------------SAPEIDVGGGNVIVECLRFH 137 (1012)
T ss_pred ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCccccc-------------CCcceeecCCceEEEEeecc
Confidence 34445678888999999994 4589999999 99999985442111 00223455556678899998
Q ss_pred eccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEE--EecCCCEEEEEeCCCcEEEEECCC-C
Q 001042 837 TKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQT-S 913 (1178)
Q Consensus 837 ~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~--~s~d~~~l~sgs~dg~I~iwd~~t-~ 913 (1178)
| -...+|++| ..|+++|||+. .++....+.+|...|.+ |+.||..+++++.|+.|+|||.+. +
T Consensus 138 p-----------TaDgil~s~-a~g~v~i~D~s--tqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~ 203 (1012)
T KOG1445|consen 138 P-----------TADGILASG-AHGSVYITDIS--TQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASM 203 (1012)
T ss_pred c-----------CcCceEEec-cCceEEEEEcc--cCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCC
Confidence 5 233455554 46899999987 55666889999999884 689999999999999999999865 6
Q ss_pred cEEEEecCCCCc-eEEEEEe-CCCeEEEEeCC----CeEEEEeCCCC-eEEEEecC-CCCCEEEEEEeCCCCEEEEEe
Q 001042 914 QLLEELKGHDAQ-VSCVRML-SGERVLTASHD----GTVKMWDVRTD-TCVATVGR-CSSAVLCMEYDDSTGILAAGG 983 (1178)
Q Consensus 914 ~~~~~l~~h~~~-V~~l~~~-~~~~l~sgs~d----g~V~iwd~~~~-~~~~~~~~-~~~~I~~l~~sp~~~~l~sgs 983 (1178)
+.++...+|.+. -..+.|. +-.++++.+.+ ..|++||.+.- ..++++.- ....|.---|+||.++++.++
T Consensus 204 ~piQ~te~H~~~rdsRv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaG 281 (1012)
T KOG1445|consen 204 EPIQTTEGHGGMRDSRVLWAGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAG 281 (1012)
T ss_pred CccccccccccchhheeeeccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEec
Confidence 778888888764 2345565 44466665544 56899998652 23333221 123344445566655544433
No 158
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.82 E-value=1.6e-18 Score=194.53 Aligned_cols=266 Identities=15% Similarity=0.269 Sum_probs=209.2
Q ss_pred ceEEEEecCCCCcccccccc-eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceecccccc
Q 001042 770 SWVQSMFSREASSRSHSFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDR 848 (1178)
Q Consensus 770 ~i~~~aFSpdg~~las~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s 848 (1178)
.|..++|-|||+.++.+.++ +.++|...|. .+++++||.+.|+|++|+
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~-------------------llqtLKgHKDtVycVAys------------ 62 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGT-------------------LLQPLKGHKDTVYCVAYA------------ 62 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcc-------------------cccccccccceEEEEEEc------------
Confidence 67788999999988888777 9999999888 788999999999999998
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEE--ecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCce
Q 001042 849 EDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQV 926 (1178)
Q Consensus 849 ~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~--s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V 926 (1178)
.||+.+|||+.|..|.+|+....+ . .. -.|.+.|.|+ +|-...|++++-. ..-+|..+.....+ .+ ....+
T Consensus 63 ~dGkrFASG~aDK~VI~W~~klEG-~--Lk-YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K-~k-ss~R~ 135 (1081)
T KOG1538|consen 63 KDGKRFASGSADKSVIIWTSKLEG-I--LK-YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSK-HK-SSSRI 135 (1081)
T ss_pred cCCceeccCCCceeEEEecccccc-e--ee-eccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHh-hh-hheeE
Confidence 899999999999999999854221 1 11 2488888875 6778889988864 46788876543322 11 34567
Q ss_pred EEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEe---cCCCCCEEEEEEeCCC-----CEEEEEeCCCeEEEEECCCCc
Q 001042 927 SCVRML-SGERVLTASHDGTVKMWDVRTDTCVATV---GRCSSAVLCMEYDDST-----GILAAGGRDAVANIWDIRAGR 997 (1178)
Q Consensus 927 ~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~---~~~~~~I~~l~~sp~~-----~~l~sgs~dg~I~lwD~~~~~ 997 (1178)
.+.+|. +|.+++.|-.||+|.+-+- +|+....+ .+.+++|++++|+|.. ..+++...+.++..|.+. |+
T Consensus 136 ~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~ 213 (1081)
T KOG1538|consen 136 ICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GK 213 (1081)
T ss_pred EEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ce
Confidence 888898 8999999999999999975 44433333 3477899999999953 467777777777777764 44
Q ss_pred eEEEEecCCccEEEEEE--cCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 001042 998 QMHKFLGHTKWIRSIRM--DRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWEN 1075 (1178)
Q Consensus 998 ~~~~~~~~~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~ 1075 (1178)
.+.+-+.-.-...|+++ +|.+++.|+.|+.+.+|. +.|-.+.++.....+|+.++..|++++++.|+.||+|..|++
T Consensus 214 ~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 214 QIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred eecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 44433333334556666 788999999999999998 678888888878899999999999999999999999999986
Q ss_pred C
Q 001042 1076 D 1076 (1178)
Q Consensus 1076 ~ 1076 (1178)
.
T Consensus 293 ~ 293 (1081)
T KOG1538|consen 293 I 293 (1081)
T ss_pred H
Confidence 4
No 159
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=7.8e-19 Score=190.73 Aligned_cols=229 Identities=18% Similarity=0.268 Sum_probs=180.5
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEE---------------------EEecCCCCceEEEEEe--CCCeEEEEeCCCeEEE
Q 001042 892 DRGKVVSGSDDQSVLVWDKQTSQLL---------------------EELKGHDAQVSCVRML--SGERVLTASHDGTVKM 948 (1178)
Q Consensus 892 d~~~l~sgs~dg~I~iwd~~t~~~~---------------------~~l~~h~~~V~~l~~~--~~~~l~sgs~dg~V~i 948 (1178)
.|+++|.|+.|..|.|||+.-...+ ..-.+|+..|.++.|+ -.+.|++||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 4789999999999999998532110 0123688899999998 5678999999999999
Q ss_pred EeCCCCeEEEEecCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEcC---CEEEEEeC
Q 001042 949 WDVRTDTCVATVGRCSSAVLCMEYDD-STGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR---DTVITGSD 1024 (1178)
Q Consensus 949 wd~~~~~~~~~~~~~~~~I~~l~~sp-~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~---~~l~sgs~ 1024 (1178)
||+.+|++..++..|.+.|.++.|+| ....|++|+.|+++.+.|.|........-.-.+.|-.++|++ ..++++..
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~td 350 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTD 350 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecC
Confidence 99999999999999999999999999 567899999999999999996443333334456788899954 48999999
Q ss_pred CCcEEEEEcCCC-eeeeEeccCCCcEEEEEEecCC-CEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEEe--cC-
Q 001042 1025 DWTARMWSISRG-TCDAVLACHAGPVQCVEYSSSD-RGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSIN--AG- 1099 (1178)
Q Consensus 1025 dg~I~iwd~~~~-~~~~~~~~h~~~I~~l~~spdg-~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is--~d- 1099 (1178)
||+|+-+|+++. +++.+++.|.++|.++++++.- .++++++.|+.|++|++.......+..-...-+...|+. |+
T Consensus 351 dG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~ 430 (463)
T KOG0270|consen 351 DGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDV 430 (463)
T ss_pred CceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCc
Confidence 999999999975 8999999999999999998764 468899999999999987653333322211122233443 33
Q ss_pred CCEEEEEeCCCcEEEEEcCCC
Q 001042 1100 DHWLGIGAADNSMSLFHRPQE 1120 (1178)
Q Consensus 1100 g~~Lasgs~Dg~I~iwd~~~~ 1120 (1178)
.-++|.|+..+.++|||+.+.
T Consensus 431 a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 431 AFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred ceEEEecCccceEEEeecccC
Confidence 347788888889999999743
No 160
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=1.8e-18 Score=193.19 Aligned_cols=311 Identities=18% Similarity=0.257 Sum_probs=242.0
Q ss_pred CCcccccCCcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeee
Q 001042 760 QPAEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVT 837 (1178)
Q Consensus 760 ~~~~~~gh~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~ 837 (1178)
..+...||.+-|.++...|.|.+||+|+.| ||||.+.||. |+++.. -.+.|.||+|+|
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgR-------------------cvr~~~-~d~~I~~vaw~P 451 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGR-------------------CVRTVQ-FDSEIRSVAWNP 451 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecce-------------------EEEEEe-ecceeEEEEecC
Confidence 445568999999999999999999999999 9999999999 777765 345899999986
Q ss_pred ccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEE----eCCCcEEEEECCCC
Q 001042 838 KREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSG----SDDQSVLVWDKQTS 913 (1178)
Q Consensus 838 ~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sg----s~dg~I~iwd~~t~ 913 (1178)
. ++-..||++-.+. +-|-+...+..... + +....|+++ ..++.+..|.-.+.
T Consensus 452 ~----------~~~~vLAvA~~~~-~~ivnp~~G~~~e~----~---------~t~ell~~~~~~~~p~~~~~~W~~~~~ 507 (733)
T KOG0650|consen 452 L----------SDLCVLAVAVGEC-VLIVNPIFGDRLEV----G---------PTKELLASAPNESEPDAAVVTWSRASL 507 (733)
T ss_pred C----------CCceeEEEEecCc-eEEeCccccchhhh----c---------chhhhhhcCCCccCCcccceeechhhh
Confidence 3 4455666666554 66666442211110 0 011112222 23457778865421
Q ss_pred c----EEEEecCCCCceEEEEEe-CCCeEEEEeCC---CeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCC
Q 001042 914 Q----LLEELKGHDAQVSCVRML-SGERVLTASHD---GTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRD 985 (1178)
Q Consensus 914 ~----~~~~l~~h~~~V~~l~~~-~~~~l~sgs~d---g~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~d 985 (1178)
+ -+...-.|...|..+.|+ .|++|++...+ ..|.|.++...+...-+....+.+.++.|+|...++++++.
T Consensus 508 ~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq- 586 (733)
T KOG0650|consen 508 DELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ- 586 (733)
T ss_pred hhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-
Confidence 1 133445689999999999 89999987654 56889998877766666667788999999999999988875
Q ss_pred CeEEEEECCCCceEEEEecCCccEEEEEEcC--CEEEEEeCCCcEEEEEcCCC-eeeeEeccCCCcEEEEEEecCCCEEE
Q 001042 986 AVANIWDIRAGRQMHKFLGHTKWIRSIRMDR--DTVITGSDDWTARMWSISRG-TCDAVLACHAGPVQCVEYSSSDRGII 1062 (1178)
Q Consensus 986 g~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~-~~~~~~~~h~~~I~~l~~spdg~~L~ 1062 (1178)
..|++||+.....++++.....+|.+++.++ +.++.|+.|+.+..+|+.-+ ++.+++..|...+++++|++.-.+++
T Consensus 587 ~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfa 666 (733)
T KOG0650|consen 587 RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFA 666 (733)
T ss_pred cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceee
Confidence 5799999999888888888888999999854 79999999999999999764 66778888999999999999999999
Q ss_pred EEeCCCcEEEEEC-------CCCceEEEEEecccCCc----EEE--EecCCCEEEEEeCCCcEEEE
Q 001042 1063 TGSSDGLLRFWEN-------DDGGIKCVKNVTIHSSA----ILS--INAGDHWLGIGAADNSMSLF 1115 (1178)
Q Consensus 1063 sgs~Dg~I~iwd~-------~~~~~~~~~~~~~h~~~----i~~--is~dg~~Lasgs~Dg~I~iw 1115 (1178)
+|+.||++.++.- .+.-...++.+.+|... |.. ++|...+|.+++.||+|++|
T Consensus 667 s~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 667 SGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 9999999998863 23345778888999766 654 48999999999999999998
No 161
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.81 E-value=4.7e-18 Score=177.95 Aligned_cols=292 Identities=16% Similarity=0.251 Sum_probs=217.2
Q ss_pred ceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCc-eeeEeecc--cccceE--EEe---
Q 001042 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGS-ELRATLKG--HTRTVR--AIN--- 890 (1178)
Q Consensus 819 ~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~-~~~~~l~~--h~~~V~--~~s--- 890 (1178)
.-+...+|+.+|..++|.+... -.+...+|++|.+ .+.+|+....+. ...+.... |..... +++
T Consensus 30 t~~l~ed~~~~I~gv~fN~~~~-------~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~ 101 (385)
T KOG1034|consen 30 TNHLKEDHNKPIFGVAFNSFLG-------CDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDS 101 (385)
T ss_pred eeehhccCCCccceeeeehhcC-------CCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecC
Confidence 3456678999999999974211 1344566776654 688888663331 22233322 333332 232
Q ss_pred c-CCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEeC--CCeEEEEeCCCeEEEEeCCCCeEEEEec---CCC
Q 001042 891 S-DRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLS--GERVLTASHDGTVKMWDVRTDTCVATVG---RCS 964 (1178)
Q Consensus 891 ~-d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~~--~~~l~sgs~dg~V~iwd~~~~~~~~~~~---~~~ 964 (1178)
. .+.++|+|+.-|.|+|.|+.++++...+.+|...|+.+.+.+ .+++++++.|.+|++||++++.++..+. +|.
T Consensus 102 ~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHr 181 (385)
T KOG1034|consen 102 NTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHR 181 (385)
T ss_pred CCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEeccccccc
Confidence 2 256789999999999999999999999999999999999994 4599999999999999999999998874 588
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce------E----------------------EEEecCCccEEEEEEcC
Q 001042 965 SAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQ------M----------------------HKFLGHTKWIRSIRMDR 1016 (1178)
Q Consensus 965 ~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~------~----------------------~~~~~~~~~v~~l~~~~ 1016 (1178)
+.|.++.|+.+|.++++++.|..+++|++...+. . .+...|...|.|+.|-+
T Consensus 182 deVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g 261 (385)
T KOG1034|consen 182 DEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG 261 (385)
T ss_pred CcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh
Confidence 9999999999999999999999999999973211 0 01234777888889999
Q ss_pred CEEEEEeCCCcEEEEEcC-CCe-------------eeeEeccCCCcEEEE--EEecCCCEEEEEeCCCcEEEEECCCCce
Q 001042 1017 DTVITGSDDWTARMWSIS-RGT-------------CDAVLACHAGPVQCV--EYSSSDRGIITGSSDGLLRFWENDDGGI 1080 (1178)
Q Consensus 1017 ~~l~sgs~dg~I~iwd~~-~~~-------------~~~~~~~h~~~I~~l--~~spdg~~L~sgs~Dg~I~iwd~~~~~~ 1080 (1178)
+++++-|.++.|..|... -++ ....+.-....|+-+ +|++-+++||.|...|.|.+||++..+.
T Consensus 262 d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep 341 (385)
T KOG1034|consen 262 DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEP 341 (385)
T ss_pred hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCC
Confidence 999999999999999872 111 122233333445555 5567789999999999999999998754
Q ss_pred EEEEEe----cccCCcEEEEecCCCEEEEEeCCCcEEEEEcC
Q 001042 1081 KCVKNV----TIHSSAILSINAGDHWLGIGAADNSMSLFHRP 1118 (1178)
Q Consensus 1081 ~~~~~~----~~h~~~i~~is~dg~~Lasgs~Dg~I~iwd~~ 1118 (1178)
....++ .+....-+++|.||..|+..++|++|.-||.-
T Consensus 342 ~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 342 PKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 222222 22333446779999999999999999999863
No 162
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=1.2e-18 Score=189.30 Aligned_cols=230 Identities=21% Similarity=0.356 Sum_probs=181.3
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCCce-------------------eeEeecccccceEEEecC---CCEEEEEeCCCcEE
Q 001042 849 EDAGFFISGSTDCLVKIWDPSLRGSE-------------------LRATLKGHTRTVRAINSD---RGKVVSGSDDQSVL 906 (1178)
Q Consensus 849 ~d~~~Lasgs~Dg~I~iWd~~~~~~~-------------------~~~~l~~h~~~V~~~s~d---~~~l~sgs~dg~I~ 906 (1178)
.-|+++|.|+.|..|.|||+...... ......+|+..|.+++.+ .+.||+||.|.+|+
T Consensus 190 ~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~ 269 (463)
T KOG0270|consen 190 GAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVK 269 (463)
T ss_pred CCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEE
Confidence 34789999999999999998632211 011234688888876544 45799999999999
Q ss_pred EEECCCCcEEEEecCCCCceEEEEEe--CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCC-CCEEEEEe
Q 001042 907 VWDKQTSQLLEELKGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDS-TGILAAGG 983 (1178)
Q Consensus 907 iwd~~t~~~~~~l~~h~~~V~~l~~~--~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~-~~~l~sgs 983 (1178)
+||+.+|++..++..|++.|.++.|+ ....+++|+.|++|.+.|.+........-...+.|..++|++. ...+++++
T Consensus 270 lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~t 349 (463)
T KOG0270|consen 270 LWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVST 349 (463)
T ss_pred EEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEec
Confidence 99999999999999999999999999 5788999999999999999853322222234678999999995 45677888
Q ss_pred CCCeEEEEECCCC-ceEEEEecCCccEEEEEEc---CCEEEEEeCCCcEEEEEcCCCeeeeEec--cCCCcEEEEEEecC
Q 001042 984 RDAVANIWDIRAG-RQMHKFLGHTKWIRSIRMD---RDTVITGSDDWTARMWSISRGTCDAVLA--CHAGPVQCVEYSSS 1057 (1178)
Q Consensus 984 ~dg~I~lwD~~~~-~~~~~~~~~~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~--~h~~~I~~l~~spd 1057 (1178)
.||+++-+|+|+. +++.+++.|.+.|.+++++ ++.+++++.|+.|++|++.......+.. -.-+...|.++.|+
T Consensus 350 ddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~ 429 (463)
T KOG0270|consen 350 DDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPD 429 (463)
T ss_pred CCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCC
Confidence 9999999999975 8999999999999999995 5699999999999999987544322211 11234667777777
Q ss_pred CC-EEEEEeCCCcEEEEECCCC
Q 001042 1058 DR-GIITGSSDGLLRFWENDDG 1078 (1178)
Q Consensus 1058 g~-~L~sgs~Dg~I~iwd~~~~ 1078 (1178)
-. .++.|+..+.+++||+.+.
T Consensus 430 ~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 430 VAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred cceEEEecCccceEEEeecccC
Confidence 54 4778888888999999876
No 163
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.80 E-value=2.7e-18 Score=187.53 Aligned_cols=279 Identities=14% Similarity=0.183 Sum_probs=207.7
Q ss_pred CcEEEEcCCCCCceeeEeeccc--ccceEEEecCCCE-EE--EEeCCCcEEEEECCCC--cEEEEecCCCCceEEEEEe-
Q 001042 861 CLVKIWDPSLRGSELRATLKGH--TRTVRAINSDRGK-VV--SGSDDQSVLVWDKQTS--QLLEELKGHDAQVSCVRML- 932 (1178)
Q Consensus 861 g~I~iWd~~~~~~~~~~~l~~h--~~~V~~~s~d~~~-l~--sgs~dg~I~iwd~~t~--~~~~~l~~h~~~V~~l~~~- 932 (1178)
.++++||+..... ...+..| ...+.++.++.+. |+ +.+.|..+++|.-... +....-+.....-.|++..
T Consensus 12 d~~kl~D~s~~~~--~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s 89 (673)
T KOG4378|consen 12 DKTKLSDFSDLET--KSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACAS 89 (673)
T ss_pred CceEEeecccccC--ccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhh
Confidence 3699999863222 2222222 2235555444332 44 4467888999974422 2222222222233444433
Q ss_pred CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCc-cEEE
Q 001042 933 SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTK-WIRS 1011 (1178)
Q Consensus 933 ~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~-~v~~ 1011 (1178)
-..++++|+..+.|+|||++...+.+.+++|.+.|+++.|+-...+||+++..|.|.+..+.++.....+....+ .|.-
T Consensus 90 ~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRl 169 (673)
T KOG4378|consen 90 QSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRL 169 (673)
T ss_pred cceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEE
Confidence 357899999999999999998888889999999999999999999999999999999999999988888865534 4556
Q ss_pred EEEcCC---EEEEEeCCCcEEEEEcCCCeeeeEe-ccCCCcEEEEEEecCC-CEEEEEeCCCcEEEEECCCCceEEEEEe
Q 001042 1012 IRMDRD---TVITGSDDWTARMWSISRGTCDAVL-ACHAGPVQCVEYSSSD-RGIITGSSDGLLRFWENDDGGIKCVKNV 1086 (1178)
Q Consensus 1012 l~~~~~---~l~sgs~dg~I~iwd~~~~~~~~~~-~~h~~~I~~l~~spdg-~~L~sgs~Dg~I~iwd~~~~~~~~~~~~ 1086 (1178)
+.+++. .|.+++.+|.|.+||+....++..+ ..|..+...++|+|.. ..+++.|.|..|.+||..... ....+
T Consensus 170 l~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~--s~~~l 247 (673)
T KOG4378|consen 170 LRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA--STDRL 247 (673)
T ss_pred eecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccc--cccee
Confidence 777543 7889999999999999887776654 4799999999999965 567889999999999998663 22222
Q ss_pred -cccCCcEEEEecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCC
Q 001042 1087 -TIHSSAILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLER 1157 (1178)
Q Consensus 1087 -~~h~~~i~~is~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg 1157 (1178)
-.|.-...+++++|.+|++|+..|.|..||+...+ .++.....|...|++++|-|..
T Consensus 248 ~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k--------------~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 248 TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK--------------APVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred eecCCcceeeecCCceEEEeecCCceEEEEecccCC--------------CCceEeeecccceeEEEeeecc
Confidence 24666667889999999999999999999997432 5666778899999999998764
No 164
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.2e-17 Score=173.53 Aligned_cols=272 Identities=16% Similarity=0.186 Sum_probs=205.2
Q ss_pred eEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEE--EecCCCEEEEEeCCCcEEE
Q 001042 830 ITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLV 907 (1178)
Q Consensus 830 V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~--~s~d~~~l~sgs~dg~I~i 907 (1178)
-.|+.|+ +.|.+||+|+.||.|.|||+. +....+.+.+|..+|.+ ||+||+.|++++.|..|.+
T Consensus 26 a~~~~Fs------------~~G~~lAvGc~nG~vvI~D~~--T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~l 91 (405)
T KOG1273|consen 26 AECCQFS------------RWGDYLAVGCANGRVVIYDFD--TFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKL 91 (405)
T ss_pred cceEEec------------cCcceeeeeccCCcEEEEEcc--ccchhhhhhccccceeEEEecCCCCEeeeecCCceeEE
Confidence 6777787 889999999999999999977 45567889999999985 6899999999999999999
Q ss_pred EECCCCcEEEEecCCCCceEEEEEe--CCCeEEEEeCCCeEEEEeCCCCeEEEEecCC----CCCEEEEEEeCCCCEEEE
Q 001042 908 WDKQTSQLLEELKGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTDTCVATVGRC----SSAVLCMEYDDSTGILAA 981 (1178)
Q Consensus 908 wd~~t~~~~~~l~~h~~~V~~l~~~--~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~----~~~I~~l~~sp~~~~l~s 981 (1178)
||+..|.+++.+. ...+|+.+.|+ +.+.+++.-.+..-.+.++..++....-... +....+..|++.|+++++
T Consensus 92 wDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIit 170 (405)
T KOG1273|consen 92 WDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIIT 170 (405)
T ss_pred EeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEE
Confidence 9999999988887 67899999998 3455555555555556665543211111111 112234468999999999
Q ss_pred EeCCCeEEEEECCCCceEEEEecCC-ccEEEEEE--cCCEEEEEeCCCcEEEEEcCCC-------ee--eeEecc--CCC
Q 001042 982 GGRDAVANIWDIRAGRQMHKFLGHT-KWIRSIRM--DRDTVITGSDDWTARMWSISRG-------TC--DAVLAC--HAG 1047 (1178)
Q Consensus 982 gs~dg~I~lwD~~~~~~~~~~~~~~-~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~-------~~--~~~~~~--h~~ 1047 (1178)
|...|.+.++|..+.+++..++... ..|..+.+ .++.++..+.|+.||.|+++.- +. .+.++. ...
T Consensus 171 GtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~ 250 (405)
T KOG1273|consen 171 GTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKL 250 (405)
T ss_pred ecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhh
Confidence 9999999999999999998887665 67777766 6789999999999999998631 11 111111 123
Q ss_pred cEEEEEEecCCCEEEEEeC-CCcEEEEECCCCceEEEEEecccCC-cEEEE--ecCCCEEEEEeCCCcEEEEEcCC
Q 001042 1048 PVQCVEYSSSDRGIITGSS-DGLLRFWENDDGGIKCVKNVTIHSS-AILSI--NAGDHWLGIGAADNSMSLFHRPQ 1119 (1178)
Q Consensus 1048 ~I~~l~~spdg~~L~sgs~-Dg~I~iwd~~~~~~~~~~~~~~h~~-~i~~i--s~dg~~Lasgs~Dg~I~iwd~~~ 1119 (1178)
.-.+++||.+|.++++|+. ...++||....| ..++.+.|..+ ....+ +|-...+++- ..|.+++|....
T Consensus 251 ~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~G--sLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 251 QWKKCCFSGDGEYVCAGSARAHALYIWEKSIG--SLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred hhhheeecCCccEEEeccccceeEEEEecCCc--ceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeec
Confidence 3467899999999988873 456999999999 67777777663 33444 5555666666 779999998754
No 165
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.79 E-value=8.1e-16 Score=181.44 Aligned_cols=326 Identities=27% Similarity=0.536 Sum_probs=246.8
Q ss_pred EecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeeccccc-ceE--EE-ecCCC-EE
Q 001042 822 IIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTR-TVR--AI-NSDRG-KV 896 (1178)
Q Consensus 822 ~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~-~V~--~~-s~d~~-~l 896 (1178)
.+.+|...|.++.+. +++..++.++.|+.+.+|+.... ......+.++.. .+. .+ ++++. .+
T Consensus 60 ~~~~~~~~i~~~~~~------------~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (466)
T COG2319 60 LLRGHEDSITSIAFS------------PDGELLLSGSSDGTIKLWDLDNG-EKLIKSLEGLHDSSVSKLALSSPDGNSIL 126 (466)
T ss_pred eeeeccceEEEEEEC------------CCCcEEEEecCCCcEEEEEcCCC-ceeEEEEeccCCCceeeEEEECCCcceEE
Confidence 567899999999997 78999999999999999997632 224455555332 333 23 56776 45
Q ss_pred EEEeC-CCcEEEEECCC-CcEEEEecCCCCceEEEEEe-CCCeEEEEeC-CCeEEEEeCCCCeEEEEecCCCCCEEEEEE
Q 001042 897 VSGSD-DQSVLVWDKQT-SQLLEELKGHDAQVSCVRML-SGERVLTASH-DGTVKMWDVRTDTCVATVGRCSSAVLCMEY 972 (1178)
Q Consensus 897 ~sgs~-dg~I~iwd~~t-~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~-dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~ 972 (1178)
+..+. |+.+.+|+... ......+..|...|..++|+ ++..+++++. |+.+++|+..++..+..+..|...+.+++|
T Consensus 127 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 206 (466)
T COG2319 127 LASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAF 206 (466)
T ss_pred eccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEE
Confidence 55444 99999999998 78888899999999999999 4557777775 999999999998888898889999999999
Q ss_pred eCCCC-EEEEEeCCCeEEEEECCCCceEE-EEecCCccE-EEEEEcCCEEEEEeCCCcEEEEEcCCCee-eeEeccCCCc
Q 001042 973 DDSTG-ILAAGGRDAVANIWDIRAGRQMH-KFLGHTKWI-RSIRMDRDTVITGSDDWTARMWSISRGTC-DAVLACHAGP 1048 (1178)
Q Consensus 973 sp~~~-~l~sgs~dg~I~lwD~~~~~~~~-~~~~~~~~v-~~l~~~~~~l~sgs~dg~I~iwd~~~~~~-~~~~~~h~~~ 1048 (1178)
+|++. .+++++.|+.+.+||...+.... .+.+|.... ..+..++..+++++.|+.+++||...... ...+.+|...
T Consensus 207 ~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 286 (466)
T COG2319 207 SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSS 286 (466)
T ss_pred cCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCcc
Confidence 99998 55555899999999999888887 677887774 33333556888999999999999987664 4444678899
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEEec--CCCEEEEE-eCCCcEEEEEcCCCccccc
Q 001042 1049 VQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSINA--GDHWLGIG-AADNSMSLFHRPQERLGGF 1125 (1178)
Q Consensus 1049 I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is~--dg~~Lasg-s~Dg~I~iwd~~~~~~~~~ 1125 (1178)
+.++.|+|++..+++++.|+.+.+||..+...........|...+..+.. ++..++.+ ..|+.+.+|+.....
T Consensus 287 v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---- 362 (466)
T COG2319 287 VLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK---- 362 (466)
T ss_pred EEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc----
Confidence 99999999999999899999999999887743333322367665655532 32455555 688999999987431
Q ss_pred cCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEE-EeCCCcEEEEECCCC
Q 001042 1126 SGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICS-GGRNGLLRLWEATIN 1177 (1178)
Q Consensus 1126 ~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las-~s~Dg~V~IWdv~tg 1177 (1178)
........ ..+..+.+++ .....+ ++.++.+.+|+....
T Consensus 363 -----------~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 402 (466)
T COG2319 363 -----------PLKTLEGH-SNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTG 402 (466)
T ss_pred -----------eeEEecCC-ceEEEEEECC-CCCEEEEecCCCceEEEecccC
Confidence 01111111 1188889988 544444 688999999998764
No 166
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.79 E-value=5.3e-18 Score=184.69 Aligned_cols=288 Identities=18% Similarity=0.224 Sum_probs=211.4
Q ss_pred cccCCcceEEEEecCCCC--cccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeecc
Q 001042 764 ASGIGRSWVQSMFSREAS--SRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKR 839 (1178)
Q Consensus 764 ~~gh~~~i~~~aFSpdg~--~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~ 839 (1178)
..-|.+.|.+++|.|..+ .+|+|... |-+||+.+.++.. ..+..+.+|.++|.+|.|+|
T Consensus 182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~---------------d~v~~f~~hs~~Vs~l~F~P-- 244 (498)
T KOG4328|consen 182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDK---------------DGVYLFTPHSGPVSGLKFSP-- 244 (498)
T ss_pred eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCcc---------------CceEEeccCCccccceEecC--
Confidence 344568899999999876 45555444 9999998544221 26778999999999999997
Q ss_pred ceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceE--EEecCCCEEEEEeCCCcEEEEECCCCcE-E
Q 001042 840 EVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKVVSGSDDQSVLVWDKQTSQL-L 916 (1178)
Q Consensus 840 ~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~--~~s~d~~~l~sgs~dg~I~iwd~~t~~~-~ 916 (1178)
.+...+++.|.||+|++-|++....+.+..+........ .++.+...++.++.=|...+||.+++.. .
T Consensus 245 ---------~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~ 315 (498)
T KOG4328|consen 245 ---------ANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEY 315 (498)
T ss_pred ---------CChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccc
Confidence 667789999999999999988444444444432222333 2456666777777778999999988655 6
Q ss_pred EEecCCCCceEEEEEe--CCCeEEEEeCCCeEEEEeCCCCeE----EEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 001042 917 EELKGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTDTC----VATVGRCSSAVLCMEYDDSTGILAAGGRDAVANI 990 (1178)
Q Consensus 917 ~~l~~h~~~V~~l~~~--~~~~l~sgs~dg~V~iwd~~~~~~----~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~l 990 (1178)
..+..|...|..++++ ....+++++.|++++|||++.-.. .-....|...|.+..|||++..|++.+.|..|++
T Consensus 316 ~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv 395 (498)
T KOG4328|consen 316 ENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRV 395 (498)
T ss_pred hhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEE
Confidence 6777899999999999 577899999999999999986322 2333478899999999998888999999999999
Q ss_pred EECC----CCceEEEEec---CCccEE--EEEEcCC--EEEEEeCCCcEEEEEcCCCeeeeEeccCCC-cEEEE-EEecC
Q 001042 991 WDIR----AGRQMHKFLG---HTKWIR--SIRMDRD--TVITGSDDWTARMWSISRGTCDAVLACHAG-PVQCV-EYSSS 1057 (1178)
Q Consensus 991 wD~~----~~~~~~~~~~---~~~~v~--~l~~~~~--~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~-~I~~l-~~spd 1057 (1178)
||.. .-.+...+.. +..+++ ...|+++ ++++|-.-..|-|+|-..++.+..+..... .|.++ .|+|-
T Consensus 396 ~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~ 475 (498)
T KOG4328|consen 396 FDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPM 475 (498)
T ss_pred eecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeeccc
Confidence 9984 2233333321 112332 3456554 888998888999999888887777653332 45554 78998
Q ss_pred CCEEEEE-eCCCcEEEEECCC
Q 001042 1058 DRGIITG-SSDGLLRFWENDD 1077 (1178)
Q Consensus 1058 g~~L~sg-s~Dg~I~iwd~~~ 1077 (1178)
+..+++| +..|.|.+|--+.
T Consensus 476 ~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 476 RDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred ccceeccCCccceEEEEecCC
Confidence 8855555 4678888886543
No 167
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.77 E-value=2.1e-17 Score=180.09 Aligned_cols=287 Identities=15% Similarity=0.221 Sum_probs=211.0
Q ss_pred eeeEeecccccceEE--EecCC--CEEEEEeCCCcEEEEECCCC----cEEEEecCCCCceEEEEEe--CCCeEEEEeCC
Q 001042 874 ELRATLKGHTRTVRA--INSDR--GKVVSGSDDQSVLVWDKQTS----QLLEELKGHDAQVSCVRML--SGERVLTASHD 943 (1178)
Q Consensus 874 ~~~~~l~~h~~~V~~--~s~d~--~~l~sgs~dg~I~iwd~~t~----~~~~~l~~h~~~V~~l~~~--~~~~l~sgs~d 943 (1178)
........+...|++ |+|.. +.+++|...|+|-+||+.+. .-+..+..|..+|.++.|+ +..++++.+.|
T Consensus 177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyD 256 (498)
T KOG4328|consen 177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYD 256 (498)
T ss_pred eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccC
Confidence 334455667777775 56654 57889999999999999633 2355678899999999999 57789999999
Q ss_pred CeEEEEeCCCCeE--EEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce-EEEEecCCccEEEEEEcC---C
Q 001042 944 GTVKMWDVRTDTC--VATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQ-MHKFLGHTKWIRSIRMDR---D 1017 (1178)
Q Consensus 944 g~V~iwd~~~~~~--~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~-~~~~~~~~~~v~~l~~~~---~ 1017 (1178)
|+|++-|++++.. +.........+.++.++.+...++.|+.=|...+||.+++.. ...+..|...|.+++++| .
T Consensus 257 GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~ 336 (498)
T KOG4328|consen 257 GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPW 336 (498)
T ss_pred ceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCch
Confidence 9999999987643 223333456678888988888888888888999999998765 666778888999999965 5
Q ss_pred EEEEEeCCCcEEEEEcCCCee----eeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCC--CceEEEEEecccCC
Q 001042 1018 TVITGSDDWTARMWSISRGTC----DAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDD--GGIKCVKNVTIHSS 1091 (1178)
Q Consensus 1018 ~l~sgs~dg~I~iwd~~~~~~----~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~--~~~~~~~~~~~h~~ 1091 (1178)
++++++.|++.+|||++.-.. .-....|...|.+..|||++..|+|.+.|..|+|||..- ........+. |..
T Consensus 337 ~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~ 415 (498)
T KOG4328|consen 337 FLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNN 415 (498)
T ss_pred heeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccC
Confidence 899999999999999986322 223345999999999999998899999999999999841 1112222221 222
Q ss_pred -------cEE-EEecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCc-ccEEE-EEEcCCCCEEE
Q 001042 1092 -------AIL-SINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTV-AVVRC-IASDLERKRIC 1161 (1178)
Q Consensus 1092 -------~i~-~is~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~-~~V~~-lafspdg~~La 1161 (1178)
... .+.|+..++++|-.-..|-|+|-..++ .+..+.... ..|.+ ..|+|-+..++
T Consensus 416 ~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q---------------~v~el~~P~~~tI~~vn~~HP~~~~~~ 480 (498)
T KOG4328|consen 416 RTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ---------------MVCELHDPESSTIPSVNEFHPMRDTLA 480 (498)
T ss_pred cccccccchhheeCCCccEEEEeccCcceeEEcCCCCE---------------EeeeccCccccccccceeeccccccee
Confidence 222 237999999999999999999987543 222221111 13333 46999888555
Q ss_pred EE-eCCCcEEEEECCC
Q 001042 1162 SG-GRNGLLRLWEATI 1176 (1178)
Q Consensus 1162 s~-s~Dg~V~IWdv~t 1176 (1178)
+| +..|.|.||--+.
T Consensus 481 aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 481 AGGNSSGKIYVFTNKK 496 (498)
T ss_pred ccCCccceEEEEecCC
Confidence 55 5678999997554
No 168
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.77 E-value=2.4e-17 Score=172.02 Aligned_cols=280 Identities=16% Similarity=0.241 Sum_probs=207.8
Q ss_pred EEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceeccccccCCC
Q 001042 774 SMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDA 851 (1178)
Q Consensus 774 ~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~ 851 (1178)
+.|||||..+.+.+.| +++|++....-... .......+....++... ...|..-+|-+. .....|+.
T Consensus 55 ckWSPDGSciL~~sedn~l~~~nlP~dlys~~----~~~~~~~~~~~~~r~~e--g~tvydy~wYs~-----M~s~qP~t 123 (406)
T KOG2919|consen 55 CKWSPDGSCILSLSEDNCLNCWNLPFDLYSKK----ADGPLNFSKHLSYRYQE--GETVYDYCWYSR-----MKSDQPST 123 (406)
T ss_pred ceeCCCCceEEeecccCeeeEEecChhhcccC----CCCccccccceeEEecc--CCEEEEEEeeec-----cccCCCcc
Confidence 6899999999998888 99999874331110 00000011122333333 345788887642 33456899
Q ss_pred CEEEEEeCCCcEEEEcCCCCCceeeEeec--ccccceE-----EEecCCCEEEEEeCCCcEEEEEC-CCCcEEEEe----
Q 001042 852 GFFISGSTDCLVKIWDPSLRGSELRATLK--GHTRTVR-----AINSDRGKVVSGSDDQSVLVWDK-QTSQLLEEL---- 919 (1178)
Q Consensus 852 ~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~--~h~~~V~-----~~s~d~~~l~sgs~dg~I~iwd~-~t~~~~~~l---- 919 (1178)
.++|+.+.|.-|++||.- .+++...+. .|...++ +|++||.+|++|- ...|+++|+ +.|+....+
T Consensus 124 ~l~a~ssr~~PIh~wdaf--tG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~ 200 (406)
T KOG2919|consen 124 NLFAVSSRDQPIHLWDAF--TGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVT 200 (406)
T ss_pred ceeeeccccCceeeeecc--ccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhh
Confidence 999999999999999976 444444444 3544444 5799999998775 478999998 555432211
Q ss_pred ---cCCCCceEEEEEe--CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeC-CCeEEEEEC
Q 001042 920 ---KGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGR-DAVANIWDI 993 (1178)
Q Consensus 920 ---~~h~~~V~~l~~~--~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~-dg~I~lwD~ 993 (1178)
.+..+.+.+++|+ +...++.|+...++-++.-..+.++..+.+|.+.|+.++|.++|+.|++|.. |..|..||+
T Consensus 201 ~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDi 280 (406)
T KOG2919|consen 201 KGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDI 280 (406)
T ss_pred cccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEee
Confidence 1336778999998 4668999999999999998899999999999999999999999999999984 678999999
Q ss_pred CCC-ceEEEEecCCc-cEE----EEEEcCCEEEEEeCCCcEEEEEcCC-CeeeeEeccCCCcEEEEEEecCCCEEEEEeC
Q 001042 994 RAG-RQMHKFLGHTK-WIR----SIRMDRDTVITGSDDWTARMWSISR-GTCDAVLACHAGPVQCVEYSSSDRGIITGSS 1066 (1178)
Q Consensus 994 ~~~-~~~~~~~~~~~-~v~----~l~~~~~~l~sgs~dg~I~iwd~~~-~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~ 1066 (1178)
+.. .++..+..|.+ .-. .+...++.|++|+.||.|++||+++ +..+..+..|+..++.++++|--.++++++.
T Consensus 281 R~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 281 RYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSG 360 (406)
T ss_pred hhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccC
Confidence 864 45566665554 222 3334677999999999999999998 7778888889999999999999888888764
Q ss_pred C
Q 001042 1067 D 1067 (1178)
Q Consensus 1067 D 1067 (1178)
.
T Consensus 361 q 361 (406)
T KOG2919|consen 361 Q 361 (406)
T ss_pred c
Confidence 4
No 169
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.76 E-value=1.2e-17 Score=169.91 Aligned_cols=281 Identities=15% Similarity=0.220 Sum_probs=200.4
Q ss_pred eEeecccccceEEEe-cCCCEEEEEeCCCcEEEEECCCCcEEEEec-CCCCceEEEEEeCCCeEEEEeCCCeEEEEeCCC
Q 001042 876 RATLKGHTRTVRAIN-SDRGKVVSGSDDQSVLVWDKQTSQLLEELK-GHDAQVSCVRMLSGERVLTASHDGTVKMWDVRT 953 (1178)
Q Consensus 876 ~~~l~~h~~~V~~~s-~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~-~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~ 953 (1178)
...+++|.+.|+++. ..+.+|.+|...|.|++|++.+.+....++ .|...|+.+...+++.+.+-+.|+.+.+|++.-
T Consensus 7 ~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~ 86 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTIAY 86 (323)
T ss_pred eeEeccccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEccC
Confidence 456678999999863 334569999999999999999999888888 567888988888889999999999999999987
Q ss_pred CeEEEEecCCCCCEEEEEEeC-----CCC----EEEEEeCCC-eEEEEECCCCceEEEE----ecCCccEEEEEEc---C
Q 001042 954 DTCVATVGRCSSAVLCMEYDD-----STG----ILAAGGRDA-VANIWDIRAGRQMHKF----LGHTKWIRSIRMD---R 1016 (1178)
Q Consensus 954 ~~~~~~~~~~~~~I~~l~~sp-----~~~----~l~sgs~dg-~I~lwD~~~~~~~~~~----~~~~~~v~~l~~~---~ 1016 (1178)
+..+..- .-.++++.|.+ +++ .++.-+... .+.+-|......+... .+..+.+.|..++ +
T Consensus 87 s~~i~i~---Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~ 163 (323)
T KOG0322|consen 87 SAFISIH---SIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACG 163 (323)
T ss_pred cceEEEe---eeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccccc
Confidence 5543321 12223333322 211 111111100 1222232222222211 1344567777752 2
Q ss_pred C--EEEEEeCCCcEEEEEcCCCe----------eeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCC--ceEE
Q 001042 1017 D--TVITGSDDWTARMWSISRGT----------CDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDG--GIKC 1082 (1178)
Q Consensus 1017 ~--~l~sgs~dg~I~iwd~~~~~----------~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~--~~~~ 1082 (1178)
. .+++|.++|.+.+||+.++. .......|..+|.++.+.+....=++|+.+..+..|+++.. ....
T Consensus 164 s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~ 243 (323)
T KOG0322|consen 164 STFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQI 243 (323)
T ss_pred ceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccc
Confidence 2 68889999999999999873 33344568999999999987777788888889999998743 2222
Q ss_pred E--EEecccCCcEEEEecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEE
Q 001042 1083 V--KNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRI 1160 (1178)
Q Consensus 1083 ~--~~~~~h~~~i~~is~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~L 1160 (1178)
. ..++.....-..+.||++.+|++++|+.||||+-.+. +.+..++-|.+.|++++|+||...+
T Consensus 244 ~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl---------------~pLAVLkyHsagvn~vAfspd~~lm 308 (323)
T KOG0322|consen 244 RKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL---------------NPLAVLKYHSAGVNAVAFSPDCELM 308 (323)
T ss_pred cceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC---------------CchhhhhhhhcceeEEEeCCCCchh
Confidence 2 2222222333566899999999999999999998843 6677788999999999999999999
Q ss_pred EEEeCCCcEEEEEC
Q 001042 1161 CSGGRNGLLRLWEA 1174 (1178)
Q Consensus 1161 as~s~Dg~V~IWdv 1174 (1178)
|+||.|+.|.+|++
T Consensus 309 AaaskD~rISLWkL 322 (323)
T KOG0322|consen 309 AAASKDARISLWKL 322 (323)
T ss_pred hhccCCceEEeeec
Confidence 99999999999986
No 170
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.76 E-value=3.5e-17 Score=174.23 Aligned_cols=241 Identities=22% Similarity=0.374 Sum_probs=185.6
Q ss_pred EEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCC--------------CCceeeEeecccccce
Q 001042 821 RIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSL--------------RGSELRATLKGHTRTV 886 (1178)
Q Consensus 821 ~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~--------------~~~~~~~~l~~h~~~V 886 (1178)
...-+|.+.|+.+.-++. .+..+.|+-+..|.|.||++.. .....+.++.+|...=
T Consensus 145 ~~~i~h~g~~NRvr~~~~----------~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EG 214 (440)
T KOG0302|consen 145 MKSIPHYGGINRVRVSRL----------GNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEG 214 (440)
T ss_pred ccccccccccceeeeccc----------CCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccc
Confidence 345578888888877632 3566778888999999999641 1234556777787655
Q ss_pred E--EEecC-CCEEEEEeCCCcEEEEECCCCcEE---EEecCCCCceEEEEEe--CCCeEEEEeCCCeEEEEeCCCC---e
Q 001042 887 R--AINSD-RGKVVSGSDDQSVLVWDKQTSQLL---EELKGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTD---T 955 (1178)
Q Consensus 887 ~--~~s~d-~~~l~sgs~dg~I~iwd~~t~~~~---~~l~~h~~~V~~l~~~--~~~~l~sgs~dg~V~iwd~~~~---~ 955 (1178)
. +|||- ...|++|..-+.|++|...+|.-. ..+.+|+..|..++|+ ..+.|++|+.||+|+|||++.+ .
T Consensus 215 y~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~ 294 (440)
T KOG0302|consen 215 YGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKA 294 (440)
T ss_pred eeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccc
Confidence 5 45652 345888888899999999887543 2466899999999999 4778999999999999999998 3
Q ss_pred EEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC---CceEEEEecCCccEEEEEEcC---CEEEEEeCCCcEE
Q 001042 956 CVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRA---GRQMHKFLGHTKWIRSIRMDR---DTVITGSDDWTAR 1029 (1178)
Q Consensus 956 ~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~---~~~~~~~~~~~~~v~~l~~~~---~~l~sgs~dg~I~ 1029 (1178)
++.+ +.|.+.|+.+.|+..-.+||+|+.||+++|||+++ ++++..++-|..+|+++.|++ ..+++++.|..|.
T Consensus 295 ~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qit 373 (440)
T KOG0302|consen 295 AVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQIT 373 (440)
T ss_pred eeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEE
Confidence 4444 78999999999999888999999999999999986 567889999999999999975 4899999999999
Q ss_pred EEEcCCCee----------------eeEeccC--CCcEEEEEEecCC-CEEEEEeCCCcEEEE
Q 001042 1030 MWSISRGTC----------------DAVLACH--AGPVQCVEYSSSD-RGIITGSSDGLLRFW 1073 (1178)
Q Consensus 1030 iwd~~~~~~----------------~~~~~~h--~~~I~~l~~spdg-~~L~sgs~Dg~I~iw 1073 (1178)
+||+....- .+-+--| ...+..+.|+++- .++++.+.|| +.||
T Consensus 374 iWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 374 IWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred EEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 999854211 0111123 2357788898864 4677777787 4555
No 171
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=2.3e-17 Score=173.94 Aligned_cols=271 Identities=24% Similarity=0.406 Sum_probs=199.8
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEeC---CCeEEEEeCCCeEEEEeCCCCeEEEE--ecCCC-CCE
Q 001042 894 GKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLS---GERVLTASHDGTVKMWDVRTDTCVAT--VGRCS-SAV 967 (1178)
Q Consensus 894 ~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~~---~~~l~sgs~dg~V~iwd~~~~~~~~~--~~~~~-~~I 967 (1178)
..+|++...|.|++||..+++.+..++++...++.+.|.+ .+.+.+|+.||+|++||+++...... ...+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5688899999999999999999999999999999999983 56789999999999999998654433 33333 466
Q ss_pred EEEEEeCCCCEEEEEe----CCCeEEEEECCCCce-EEEE-ecCCccEEEEEE---cCCEEEEEeCCCcEEEEEcCCCee
Q 001042 968 LCMEYDDSTGILAAGG----RDAVANIWDIRAGRQ-MHKF-LGHTKWIRSIRM---DRDTVITGSDDWTARMWSISRGTC 1038 (1178)
Q Consensus 968 ~~l~~sp~~~~l~sgs----~dg~I~lwD~~~~~~-~~~~-~~~~~~v~~l~~---~~~~l~sgs~dg~I~iwd~~~~~~ 1038 (1178)
.+++.+-.++.+++|+ .+-.+.+||+|..+. +..+ ..|.+.|+++.| +++.|++||.||-|.++|++....
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 7777777888888886 467899999998876 5554 579999999999 466999999999999999876422
Q ss_pred ---eeEeccCCCcEEEEEEecCC-CEEEEEeCCCcEEEEECCCCceEEEEEeccc-------------CCcEEEEec-CC
Q 001042 1039 ---DAVLACHAGPVQCVEYSSSD-RGIITGSSDGLLRFWENDDGGIKCVKNVTIH-------------SSAILSINA-GD 1100 (1178)
Q Consensus 1039 ---~~~~~~h~~~I~~l~~spdg-~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h-------------~~~i~~is~-dg 1100 (1178)
+...-.|...|.++.|..++ +.|.+-+..++..+|+++.+. +...+... ..-|.+.+| ++
T Consensus 201 eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~--~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~ 278 (376)
T KOG1188|consen 201 EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS--EETWLENPDVSADDLRKEDNCDYVINEHSPGDK 278 (376)
T ss_pred hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC--hhhcccCccchhhhHHhhhhhhheeecccCCCc
Confidence 22223477789999999877 458888889999999999884 22222111 011222233 44
Q ss_pred CEEEEEeC-CCcEEEEEcCCCccccccCCCCCccceeEeeccC-CCcccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001042 1101 HWLGIGAA-DNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQ-KTVAVVRCIASDLERKRICSGGRNGLLRLWEAT 1175 (1178)
Q Consensus 1101 ~~Lasgs~-Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~-~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~ 1175 (1178)
...+.++. -|...++-+.... .+... +....+. +|...|+++.|...+.++.|||+||.+.+|..+
T Consensus 279 ~~~~l~g~~~n~~~~~~~~~~~------s~~~~---~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 279 DTCALAGTDSNKGTIFPLVDTS------SGSLL---TEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred ceEEEeccccCceeEEEeeecc------ccccc---CccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 55555544 5556555443110 11111 3333444 488889999999999999999999999999954
No 172
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.76 E-value=6.8e-17 Score=173.96 Aligned_cols=290 Identities=17% Similarity=0.228 Sum_probs=213.2
Q ss_pred CCcceEEEEecCCCC-cccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceec
Q 001042 767 IGRSWVQSMFSREAS-SRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWD 843 (1178)
Q Consensus 767 h~~~i~~~aFSpdg~-~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~ 843 (1178)
-+.+|..+.|.+.+. .+|+|+.| ||+|-+..+...+. ...-.-+..|..|..+|+++.|+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~----------~~~V~y~s~Ls~H~~aVN~vRf~------- 74 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG----------DMKVEYLSSLSRHTRAVNVVRFS------- 74 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCC----------ceeEEEeecccCCcceeEEEEEc-------
Confidence 367888899999887 99999999 99999987663221 01222567899999999999998
Q ss_pred cccccCCCCEEEEEeCCCcEEEEcCC--------------CCCceeeEeecccccceE--EEecCCCEEEEEeCCCcEEE
Q 001042 844 LVGDREDAGFFISGSTDCLVKIWDPS--------------LRGSELRATLKGHTRTVR--AINSDRGKVVSGSDDQSVLV 907 (1178)
Q Consensus 844 ~~~~s~d~~~Lasgs~Dg~I~iWd~~--------------~~~~~~~~~l~~h~~~V~--~~s~d~~~l~sgs~dg~I~i 907 (1178)
|+|++||||+++|.|.+|... .......+.+.+|...+. +|++++..+++++.|..+++
T Consensus 75 -----p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l 149 (434)
T KOG1009|consen 75 -----PDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRL 149 (434)
T ss_pred -----CCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEE
Confidence 899999999999999999754 112345567888998888 67999999999999999999
Q ss_pred EECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEec----------C---------C----
Q 001042 908 WDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVG----------R---------C---- 963 (1178)
Q Consensus 908 wd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~----------~---------~---- 963 (1178)
||+..|+....+.+|...+..++|. -+.++++-+.|...+.+.+...+.+.... . |
T Consensus 150 ~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTl 229 (434)
T KOG1009|consen 150 WDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETL 229 (434)
T ss_pred EEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCch
Confidence 9999999999999999999999998 46778888888766666655433222111 0 1
Q ss_pred CCCEEEEEEeCCCCEEEEEeC----CCe-----EEEEECCC-CceEEEEecCCccEEEEEEcC-----------------
Q 001042 964 SSAVLCMEYDDSTGILAAGGR----DAV-----ANIWDIRA-GRQMHKFLGHTKWIRSIRMDR----------------- 1016 (1178)
Q Consensus 964 ~~~I~~l~~sp~~~~l~sgs~----dg~-----I~lwD~~~-~~~~~~~~~~~~~v~~l~~~~----------------- 1016 (1178)
..-...++|+|+|..+++... ++. .++++-.. .++...+......+..+.+++
T Consensus 230 ksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~l 309 (434)
T KOG1009|consen 230 KSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVL 309 (434)
T ss_pred hhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEecccccccccccc
Confidence 112346789999998887642 222 23443221 223333444444444433311
Q ss_pred ---CEEEEEeCCCcEEEEEcCCCeeeeEec-cCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 001042 1017 ---DTVITGSDDWTARMWSISRGTCDAVLA-CHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGG 1079 (1178)
Q Consensus 1017 ---~~l~sgs~dg~I~iwd~~~~~~~~~~~-~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~ 1079 (1178)
..++.++ ...|++||.++-.+..... -|-..|+.++|++||..++..|.||...+-.++..+
T Consensus 310 pyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 310 PYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred ccceEEEEee-cceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchh
Confidence 1344444 4589999998877766654 488899999999999999999999998888777664
No 173
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.76 E-value=3.3e-17 Score=174.43 Aligned_cols=253 Identities=19% Similarity=0.290 Sum_probs=183.5
Q ss_pred cccccCCcceEEEEecCCCCccccc--ccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeee
Q 001042 762 AEASGIGRSWVQSMFSREASSRSHS--FSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVT 837 (1178)
Q Consensus 762 ~~~~gh~~~i~~~aFSpdg~~las~--~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~ 837 (1178)
....+|.+.+..+.-++-|+-.+++ +.. |.||++......-. ............++.++.+|.+.=++++|||
T Consensus 145 ~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~---~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp 221 (440)
T KOG0302|consen 145 MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALS---EPGLEVKDSEFRPLFTFNGHKGEGYGLDWSP 221 (440)
T ss_pred ccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhc---CccccccccccCceEEecccCccceeeeccc
Confidence 4456788888888767665433333 333 99999875332111 1111111244568999999999999999995
Q ss_pred ccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceee-EeecccccceEE--EecC-CCEEEEEeCCCcEEEEECCCC
Q 001042 838 KREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELR-ATLKGHTRTVRA--INSD-RGKVVSGSDDQSVLVWDKQTS 913 (1178)
Q Consensus 838 ~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~-~~l~~h~~~V~~--~s~d-~~~l~sgs~dg~I~iwd~~t~ 913 (1178)
-....|+||.--+.|++|....++...- ..+.+|+..|-. +||. ...+++|+.||+|+|||++.+
T Consensus 222 -----------~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~ 290 (440)
T KOG0302|consen 222 -----------IKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSG 290 (440)
T ss_pred -----------ccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCC
Confidence 2344577888888999999875433322 456789998885 5664 567999999999999999988
Q ss_pred cE--EEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCC---CeEEEEecCCCCCEEEEEEeC-CCCEEEEEeCCC
Q 001042 914 QL--LEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRT---DTCVATVGRCSSAVLCMEYDD-STGILAAGGRDA 986 (1178)
Q Consensus 914 ~~--~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~---~~~~~~~~~~~~~I~~l~~sp-~~~~l~sgs~dg 986 (1178)
.. ....+.|.+.|+.+.|+ ...+|++|+.||+++|||+++ ++++..++.|..+|+++.|+| +...+++++.|.
T Consensus 291 ~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~ 370 (440)
T KOG0302|consen 291 PKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDN 370 (440)
T ss_pred CccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCC
Confidence 22 22338899999999999 455899999999999999975 567889999999999999999 566788899999
Q ss_pred eEEEEECCCCce----------------EEEEecC--CccEEEEEEc---CCEEEEEeCCCcE
Q 001042 987 VANIWDIRAGRQ----------------MHKFLGH--TKWIRSIRMD---RDTVITGSDDWTA 1028 (1178)
Q Consensus 987 ~I~lwD~~~~~~----------------~~~~~~~--~~~v~~l~~~---~~~l~sgs~dg~I 1028 (1178)
.|.+||+....- -+-+.-| ...+..+.|+ +.++++.+.||.-
T Consensus 371 QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfn 433 (440)
T KOG0302|consen 371 QITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFN 433 (440)
T ss_pred cEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEeccccee
Confidence 999999863211 0111123 3467778885 4589998888843
No 174
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.76 E-value=8.4e-17 Score=168.06 Aligned_cols=263 Identities=16% Similarity=0.227 Sum_probs=201.8
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCc------------EEEEec-CCCCceEEEEEe--------CCCeEEEEeCCCeE
Q 001042 888 AINSDRGKVVSGSDDQSVLVWDKQTSQ------------LLEELK-GHDAQVSCVRML--------SGERVLTASHDGTV 946 (1178)
Q Consensus 888 ~~s~d~~~l~sgs~dg~I~iwd~~t~~------------~~~~l~-~h~~~V~~l~~~--------~~~~l~sgs~dg~V 946 (1178)
.|+|||..|++-+.|..+++|++...- ...+++ .....|..-+|- +..++++.+.+.-|
T Consensus 56 kWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PI 135 (406)
T KOG2919|consen 56 KWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPI 135 (406)
T ss_pred eeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCce
Confidence 489999999999999999999874210 011111 123456665553 35678888999999
Q ss_pred EEEeCCCCeEEEEecCC--C---CCEEEEEEeCCCCEEEEEeCCCeEEEEEC-CCCceEE--EE-----ecCCccEEEEE
Q 001042 947 KMWDVRTDTCVATVGRC--S---SAVLCMEYDDSTGILAAGGRDAVANIWDI-RAGRQMH--KF-----LGHTKWIRSIR 1013 (1178)
Q Consensus 947 ~iwd~~~~~~~~~~~~~--~---~~I~~l~~sp~~~~l~sgs~dg~I~lwD~-~~~~~~~--~~-----~~~~~~v~~l~ 1013 (1178)
++||.-+|+....+... . ....+++|+|||..|++|. ...|+++|+ +.|+... .. .+..+.+.+++
T Consensus 136 h~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a 214 (406)
T KOG2919|consen 136 HLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFA 214 (406)
T ss_pred eeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccceeeeee
Confidence 99999999987776542 2 2457899999999998775 578999999 5554321 11 23466788899
Q ss_pred EcC---CEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEe-CCCcEEEEECCCCceEEEEEeccc
Q 001042 1014 MDR---DTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGS-SDGLLRFWENDDGGIKCVKNVTIH 1089 (1178)
Q Consensus 1014 ~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs-~Dg~I~iwd~~~~~~~~~~~~~~h 1089 (1178)
++| ..++.|+...++-||.-..+.++..+-+|.+.|+.+.|.++|+.|.+|+ .|..|..||++... ..+..+..|
T Consensus 215 ~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~-~pv~~L~rh 293 (406)
T KOG2919|consen 215 FSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR-DPVYALERH 293 (406)
T ss_pred ccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc-chhhhhhhh
Confidence 865 4899999999999999889999999999999999999999999999998 47789999998653 445555555
Q ss_pred CC----cE-EEEecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEe
Q 001042 1090 SS----AI-LSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGG 1164 (1178)
Q Consensus 1090 ~~----~i-~~is~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s 1164 (1178)
.. +| ..+.|+|++||+|+.||.|++||++.. | ........|+..|+.++++|--.++|+++
T Consensus 294 v~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~--------g------n~~sv~~~~sd~vNgvslnP~mpilatss 359 (406)
T KOG2919|consen 294 VGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDL--------G------NEVSVTGNYSDTVNGVSLNPIMPILATSS 359 (406)
T ss_pred ccCccceEEEecCCCCceeeccCCCccEEEEecCCC--------C------CcccccccccccccceecCcccceeeecc
Confidence 44 22 456899999999999999999999741 2 23344557888899999999988888876
Q ss_pred CC
Q 001042 1165 RN 1166 (1178)
Q Consensus 1165 ~D 1166 (1178)
..
T Consensus 360 Gq 361 (406)
T KOG2919|consen 360 GQ 361 (406)
T ss_pred Cc
Confidence 43
No 175
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=1.4e-17 Score=200.19 Aligned_cols=244 Identities=18% Similarity=0.321 Sum_probs=195.4
Q ss_pred cceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCC----CCceeeEeecccccceEEE--ecC-CCEEEEEe
Q 001042 828 GAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSL----RGSELRATLKGHTRTVRAI--NSD-RGKVVSGS 900 (1178)
Q Consensus 828 ~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~----~~~~~~~~l~~h~~~V~~~--s~d-~~~l~sgs 900 (1178)
..-+.++|.+... ....+||.|..||.|.+||... .....+.+...|.+.|..+ ++. ++.||+|+
T Consensus 65 ~rF~kL~W~~~g~--------~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa 136 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGS--------HSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGA 136 (1049)
T ss_pred ccceeeeecccCC--------CccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccC
Confidence 4567788873211 1114699999999999999763 2334567788899999965 554 55999999
Q ss_pred CCCcEEEEECCCCcEEEEec--CCCCceEEEEEe--CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCC--CEEEEEEeC
Q 001042 901 DDQSVLVWDKQTSQLLEELK--GHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTDTCVATVGRCSS--AVLCMEYDD 974 (1178)
Q Consensus 901 ~dg~I~iwd~~t~~~~~~l~--~h~~~V~~l~~~--~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~--~I~~l~~sp 974 (1178)
.||.|.|||+..-+.-.... ...+.|.+++|+ ..+.|++++.+|.+.|||++..+.+..+..+.. .+..++|+|
T Consensus 137 ~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP 216 (1049)
T KOG0307|consen 137 DDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHP 216 (1049)
T ss_pred CCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCC
Confidence 99999999998755443332 245789999999 567799999999999999999988777755443 478999999
Q ss_pred CCC-EEEEEeCC---CeEEEEECCCC-ceEEEEecCCccEEEEEE---cCCEEEEEeCCCcEEEEEcCCCeeeeEeccCC
Q 001042 975 STG-ILAAGGRD---AVANIWDIRAG-RQMHKFLGHTKWIRSIRM---DRDTVITGSDDWTARMWSISRGTCDAVLACHA 1046 (1178)
Q Consensus 975 ~~~-~l~sgs~d---g~I~lwD~~~~-~~~~~~~~~~~~v~~l~~---~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~ 1046 (1178)
++. .+++++.| -.|.+||+|.. .+++.+.+|...|.++.| |++++++++.|+.|.+|+.++++.+..+....
T Consensus 217 ~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~ 296 (1049)
T KOG0307|consen 217 DHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQG 296 (1049)
T ss_pred CCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCC
Confidence 753 45566544 36999999864 467788899999999999 45699999999999999999999999999888
Q ss_pred CcEEEEEEecCCC-EEEEEeCCCcEEEEECCCCc
Q 001042 1047 GPVQCVEYSSSDR-GIITGSSDGLLRFWENDDGG 1079 (1178)
Q Consensus 1047 ~~I~~l~~spdg~-~L~sgs~Dg~I~iwd~~~~~ 1079 (1178)
+++..+.|+|... .+++++-||.|.|+.+.++.
T Consensus 297 nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 297 NWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred cceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 9999999999876 78888999999999998764
No 176
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=2.9e-16 Score=185.40 Aligned_cols=282 Identities=17% Similarity=0.318 Sum_probs=211.0
Q ss_pred eEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEecCC---CCceEEEEEe---CCCeEEEEeCCCeEEEEeCCC-----C
Q 001042 886 VRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGH---DAQVSCVRML---SGERVLTASHDGTVKMWDVRT-----D 954 (1178)
Q Consensus 886 V~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h---~~~V~~l~~~---~~~~l~sgs~dg~V~iwd~~~-----~ 954 (1178)
+..++|-...++++...-.|+|||.+.++....+..+ ...|+.+.+. +...+++|+.||.|+||+--. .
T Consensus 1069 ~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~ 1148 (1387)
T KOG1517|consen 1069 TLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKP 1148 (1387)
T ss_pred eeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCc
Confidence 3356777788999988889999999999998887654 3568888886 456799999999999997422 2
Q ss_pred eEEEEecC-------CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEe-cCCccEEEEEE---cCCEEEEEe
Q 001042 955 TCVATVGR-------CSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFL-GHTKWIRSIRM---DRDTVITGS 1023 (1178)
Q Consensus 955 ~~~~~~~~-------~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~-~~~~~v~~l~~---~~~~l~sgs 1023 (1178)
+.+....+ ..+.=.-+.|.....+|+++|.-..|+|||......+..+. +....+++++- .++.+++|.
T Consensus 1149 eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGf 1228 (1387)
T KOG1517|consen 1149 ELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGF 1228 (1387)
T ss_pred eeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEee
Confidence 23332221 11222456788877778888878899999998887777654 34456777765 468999999
Q ss_pred CCCcEEEEEcCCCe---eeeEeccCCCc--EEEEEEecCCCE-EEEEeCCCcEEEEECCCCceEEEEEecccC--C-cE-
Q 001042 1024 DDWTARMWSISRGT---CDAVLACHAGP--VQCVEYSSSDRG-IITGSSDGLLRFWENDDGGIKCVKNVTIHS--S-AI- 1093 (1178)
Q Consensus 1024 ~dg~I~iwd~~~~~---~~~~~~~h~~~--I~~l~~spdg~~-L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~--~-~i- 1093 (1178)
.||.|++||.+... .+..++.|... |..+.+.+.|-. |++|+.||.|++||++.........+..|. + ..
T Consensus 1229 aDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lT 1308 (1387)
T KOG1517|consen 1229 ADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALT 1308 (1387)
T ss_pred cCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccce
Confidence 99999999987643 46677788887 999999987655 999999999999999974323333333332 2 24
Q ss_pred -EEEecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 001042 1094 -LSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLW 1172 (1178)
Q Consensus 1094 -~~is~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IW 1172 (1178)
..++.+...+|+|+. +.|.||++....+..+...+.- .....+.+.|++|+|-.-+||.|+.|.+|.||
T Consensus 1309 al~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F---------~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iY 1378 (1387)
T KOG1517|consen 1309 ALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGF---------MGQRIGSVSCLAFHPHRLLLAAGSADSTVSIY 1378 (1387)
T ss_pred eeeeccCCCeeeecCc-ceEEEEecChhhhcccccCccc---------ccCcCCCcceeeecchhHhhhhccCCceEEEe
Confidence 444889999999998 9999999987666554433311 11233457999999999999999999999999
Q ss_pred ECCCC
Q 001042 1173 EATIN 1177 (1178)
Q Consensus 1173 dv~tg 1177 (1178)
..+.+
T Consensus 1379 s~~k~ 1383 (1387)
T KOG1517|consen 1379 SCEKP 1383 (1387)
T ss_pred ecCCc
Confidence 88754
No 177
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.73 E-value=4e-16 Score=163.61 Aligned_cols=284 Identities=14% Similarity=0.257 Sum_probs=207.6
Q ss_pred ecccccceEEE--e----cC-CCEEEEEeCCCcEEEEECCCCc---EEEEec--CCCCceEEEEEe-C----CCeEEEEe
Q 001042 879 LKGHTRTVRAI--N----SD-RGKVVSGSDDQSVLVWDKQTSQ---LLEELK--GHDAQVSCVRML-S----GERVLTAS 941 (1178)
Q Consensus 879 l~~h~~~V~~~--s----~d-~~~l~sgs~dg~I~iwd~~t~~---~~~~l~--~h~~~V~~l~~~-~----~~~l~sgs 941 (1178)
.++|..++..+ + .+ .+.+++++. ..+.+|.....- .++.+. .|......++|+ + +-.+++|+
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G 112 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG 112 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence 44566666643 2 22 334555554 578888865432 233332 366777888887 2 44688889
Q ss_pred CCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCceEEEE---ecCCccEEEEEE--c
Q 001042 942 HDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDST-GILAAGGRDAVANIWDIRAGRQMHKF---LGHTKWIRSIRM--D 1015 (1178)
Q Consensus 942 ~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~-~~l~sgs~dg~I~lwD~~~~~~~~~~---~~~~~~v~~l~~--~ 1015 (1178)
.-|.|++.|+.++++...+.+|...|..+.++|+. +++++++.|..|++|++++..++..+ .+|.+.|.++.| +
T Consensus 113 ~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~ 192 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLD 192 (385)
T ss_pred ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCC
Confidence 99999999999999999999999999999999954 78999999999999999999998776 579999999999 4
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeee----------------------------EeccCCCcEEEEEEecCCCEEEEEeCC
Q 001042 1016 RDTVITGSDDWTARMWSISRGTCDA----------------------------VLACHAGPVQCVEYSSSDRGIITGSSD 1067 (1178)
Q Consensus 1016 ~~~l~sgs~dg~I~iwd~~~~~~~~----------------------------~~~~h~~~I~~l~~spdg~~L~sgs~D 1067 (1178)
++++++++.|.++++|++...+... +-.-|...|-|+.|- |+++++-|-+
T Consensus 193 gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSksce 270 (385)
T KOG1034|consen 193 GDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCE 270 (385)
T ss_pred CCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccC
Confidence 6699999999999999997421100 112366677777776 6889999999
Q ss_pred CcEEEEECC-CC-----------ceEEEEEecccCCcEEE----EecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCC
Q 001042 1068 GLLRFWEND-DG-----------GIKCVKNVTIHSSAILS----INAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSK 1131 (1178)
Q Consensus 1068 g~I~iwd~~-~~-----------~~~~~~~~~~h~~~i~~----is~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~ 1131 (1178)
+.|..|... -+ .......+......++- +.+-+++||.|...|.|.+||+...... .
T Consensus 271 naI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~-------~ 343 (385)
T KOG1034|consen 271 NAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPP-------K 343 (385)
T ss_pred ceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCc-------c
Confidence 999999762 11 11222333334444433 3577899999999999999999854321 0
Q ss_pred ccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001042 1132 MSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATI 1176 (1178)
Q Consensus 1132 ~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~t 1176 (1178)
. -++.. ......|+..+||.||..|+...+||+|.-||.-+
T Consensus 344 ~--ttl~~--s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv~ 384 (385)
T KOG1034|consen 344 C--TTLTH--SKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRVS 384 (385)
T ss_pred C--ceEEe--ccccceeeeeeecccCcEEEEEeCCCcEEEEEeec
Confidence 0 01111 22345799999999999999999999999998643
No 178
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=4.8e-17 Score=181.83 Aligned_cols=256 Identities=23% Similarity=0.350 Sum_probs=192.2
Q ss_pred ceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCC------CCCceeeEeecccccceEEE--e
Q 001042 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPS------LRGSELRATLKGHTRTVRAI--N 890 (1178)
Q Consensus 819 ~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~------~~~~~~~~~l~~h~~~V~~~--s 890 (1178)
.-.++..|...|.+++|+ +....|++|+.||++++|+++ ....+.+.++.+|.++|.|+ .
T Consensus 286 ik~tl~s~~d~ir~l~~~------------~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~ 353 (577)
T KOG0642|consen 286 IKFTLRSHDDCIRALAFH------------PSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVP 353 (577)
T ss_pred eeeeeecchhhhhhhhcC------------CCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEec
Confidence 344889999999999998 678889999999999999983 12345678899999999975 7
Q ss_pred cCCCEEEEEeCCCcEEEEECCCC----------cEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEE
Q 001042 891 SDRGKVVSGSDDQSVLVWDKQTS----------QLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVAT 959 (1178)
Q Consensus 891 ~d~~~l~sgs~dg~I~iwd~~t~----------~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~ 959 (1178)
+++..+++|+.||+|+.|++... .....+.||.+.|+.++++ ..+.|++++.||+++.|+...... .+
T Consensus 354 ~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~ 432 (577)
T KOG0642|consen 354 SNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CT 432 (577)
T ss_pred CCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cc
Confidence 89999999999999999965421 2345678999999999999 677899999999999999876665 33
Q ss_pred ecCCC--CCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCceEEEEecC-------CccEEEEEEcC--CEEEEEeCCCc
Q 001042 960 VGRCS--SAVLCMEYDDST-GILAAGGRDAVANIWDIRAGRQMHKFLGH-------TKWIRSIRMDR--DTVITGSDDWT 1027 (1178)
Q Consensus 960 ~~~~~--~~I~~l~~sp~~-~~l~sgs~dg~I~lwD~~~~~~~~~~~~~-------~~~v~~l~~~~--~~l~sgs~dg~ 1027 (1178)
+.... +.-.++.+-... .+.++...-+.-.++|+.....+..+... ...+..+.+++ ...+++..|+.
T Consensus 433 f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~ 512 (577)
T KOG0642|consen 433 FGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRS 512 (577)
T ss_pred cCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCc
Confidence 33222 233444443322 22222233333344444444444443221 12345555543 48999999999
Q ss_pred EEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEeccc
Q 001042 1028 ARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIH 1089 (1178)
Q Consensus 1028 I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h 1089 (1178)
|+++|..++..+.....|...++++++.|+|.+|++|+.|+.+++|.+... .++.....|
T Consensus 513 Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k--~~~~es~~~ 572 (577)
T KOG0642|consen 513 IRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK--TCVLESTAH 572 (577)
T ss_pred eecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccch--heeeccccc
Confidence 999999999999999999999999999999999999999999999998776 555554444
No 179
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.72 E-value=3.5e-16 Score=187.72 Aligned_cols=343 Identities=17% Similarity=0.194 Sum_probs=214.7
Q ss_pred cccceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCC---ce--eeEeecccccceE--E
Q 001042 816 IQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRG---SE--LRATLKGHTRTVR--A 888 (1178)
Q Consensus 816 ~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~---~~--~~~~l~~h~~~V~--~ 888 (1178)
.+..+..+..|+..|..++.++ +++.+++|||.||+|++||...-. .. ...++......+. .
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~-----------~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt 1105 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSS-----------EHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVT 1105 (1431)
T ss_pred cceEeehhhhccccccceeecC-----------CCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEE
Confidence 3457888999999999999873 778999999999999999965211 11 1222222233444 4
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCc-------EEEEecCC-CCceEE-EEEe--CCC-eEEEEeCCCeEEEEeCCCCeE
Q 001042 889 INSDRGKVVSGSDDQSVLVWDKQTSQ-------LLEELKGH-DAQVSC-VRML--SGE-RVLTASHDGTVKMWDVRTDTC 956 (1178)
Q Consensus 889 ~s~d~~~l~sgs~dg~I~iwd~~t~~-------~~~~l~~h-~~~V~~-l~~~--~~~-~l~sgs~dg~V~iwd~~~~~~ 956 (1178)
....++.+|+++.||.|++.+++..+ .......+ .+.+.+ -++. ... .++.+...+.|..||+++...
T Consensus 1106 ~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~ 1185 (1431)
T KOG1240|consen 1106 MCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHD 1185 (1431)
T ss_pred eccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhh
Confidence 46889999999999999999987621 11111112 233333 3443 344 688888899999999998776
Q ss_pred EEEec--CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEe-cCCccEEEEEEc---C--CE-EEEEe-CCC
Q 001042 957 VATVG--RCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFL-GHTKWIRSIRMD---R--DT-VITGS-DDW 1026 (1178)
Q Consensus 957 ~~~~~--~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~-~~~~~v~~l~~~---~--~~-l~sgs-~dg 1026 (1178)
...++ ...+.|++++.+|.++++++|+..|.+.+||++-+.++..+. .+..++..+..+ + .. +.+|+ ..+
T Consensus 1186 ~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~n 1265 (1431)
T KOG1240|consen 1186 AWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNN 1265 (1431)
T ss_pred HHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCC
Confidence 65553 346789999999999999999999999999999998887764 344677766653 3 33 44444 578
Q ss_pred cEEEEEcCCCeeeeEeccCCC-------------------cEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEec
Q 001042 1027 TARMWSISRGTCDAVLACHAG-------------------PVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVT 1087 (1178)
Q Consensus 1027 ~I~iwd~~~~~~~~~~~~h~~-------------------~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~ 1087 (1178)
.|.+|++.+|.+..++...++ ......+...+..+.+|+.|..|+.||........ ....
T Consensus 1266 evs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss-~~~~ 1344 (1431)
T KOG1240|consen 1266 EVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISS-YAVP 1344 (1431)
T ss_pred ceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccccc-cccc
Confidence 899999999977666543210 11223333446678999999999999988763221 1222
Q ss_pred ccCCcEEEEe-cCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCcc--ceeEeeccCCCcccEEEEEEcCC-CCEEEEE
Q 001042 1088 IHSSAILSIN-AGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMS--GWQLYRTPQKTVAVVRCIASDLE-RKRICSG 1163 (1178)
Q Consensus 1088 ~h~~~i~~is-~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~--~~~~~~~~~~h~~~V~~lafspd-g~~Las~ 1163 (1178)
+........+ ..+..++.|+. .+..+-.. .........+.... .-........|.++|+++++... ..+|+++
T Consensus 1345 ~~s~~~~~~~~s~~~~~i~~~~--~i~e~i~~-~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~ 1421 (1431)
T KOG1240|consen 1345 GPSTSYSTNSESYDLSTIPGSQ--FIDEFIIY-QQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSS 1421 (1431)
T ss_pred CccccccccchhccccccCCCc--cchhhhhh-hhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEe
Confidence 2221111111 11122222221 11110000 00000000000000 00011123468889999998754 4588999
Q ss_pred eCCCcEEEEE
Q 001042 1164 GRNGLLRLWE 1173 (1178)
Q Consensus 1164 s~Dg~V~IWd 1173 (1178)
+.||.|+||.
T Consensus 1422 s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1422 SRDGVIKIWK 1431 (1431)
T ss_pred cCCCeeeecC
Confidence 9999999994
No 180
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=1.7e-15 Score=152.47 Aligned_cols=277 Identities=16% Similarity=0.258 Sum_probs=195.6
Q ss_pred CcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceeccc
Q 001042 768 GRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLV 845 (1178)
Q Consensus 768 ~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~ 845 (1178)
+..|.+-++||.+++++.|..+ |-+..+.+..... ...+.+..+-..++|.++|+.++|.
T Consensus 10 ~~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~s---------a~~~gk~~iv~eqahdgpiy~~~f~--------- 71 (325)
T KOG0649|consen 10 YNTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGS---------AEPPGKLKIVPEQAHDGPIYYLAFH--------- 71 (325)
T ss_pred HHHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccc---------cCCCCCcceeeccccCCCeeeeeee---------
Confidence 3456666999999999999887 7777666432111 0122233566779999999999996
Q ss_pred cccCCCCEEEEEeCCCcEEEEcCCCCCc-----ee-eEeecccc-----cceEEE--ecCCCEEEEEeCCCcEEEEECCC
Q 001042 846 GDREDAGFFISGSTDCLVKIWDPSLRGS-----EL-RATLKGHT-----RTVRAI--NSDRGKVVSGSDDQSVLVWDKQT 912 (1178)
Q Consensus 846 ~~s~d~~~Lasgs~Dg~I~iWd~~~~~~-----~~-~~~l~~h~-----~~V~~~--s~d~~~l~sgs~dg~I~iwd~~t 912 (1178)
..+|++|+ ||.|+-|....... ++ ......|. ..|+++ .|..+-++.++.|+.++-||+++
T Consensus 72 -----d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~ 145 (325)
T KOG0649|consen 72 -----DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLED 145 (325)
T ss_pred -----hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecC
Confidence 56777777 59999997541111 00 01111122 234444 57777778888999999999999
Q ss_pred CcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCC----------CCCEEEEEEeCCCCEEEE
Q 001042 913 SQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRC----------SSAVLCMEYDDSTGILAA 981 (1178)
Q Consensus 913 ~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~----------~~~I~~l~~sp~~~~l~s 981 (1178)
|+..+++++|++.|.++.-- ....+++|++||++++||.++++++..+... ...|-+++ -+..++++
T Consensus 146 G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvC 223 (325)
T KOG0649|consen 146 GRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVC 223 (325)
T ss_pred CEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEe
Confidence 99999999999999999984 6778999999999999999999999887432 12344444 45667877
Q ss_pred EeCCCeEEEEECCCCceEEEEecCCccEEEEEEcCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCC-CE
Q 001042 982 GGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSD-RG 1060 (1178)
Q Consensus 982 gs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg-~~ 1060 (1178)
|+ ...+.+|.+++.++...+ .-...+..+.|..+.+++++..+.|.-|.+. |.............++..|+..- +.
T Consensus 224 Gg-Gp~lslwhLrsse~t~vf-pipa~v~~v~F~~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~ 300 (325)
T KOG0649|consen 224 GG-GPKLSLWHLRSSESTCVF-PIPARVHLVDFVDDCVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKF 300 (325)
T ss_pred cC-CCceeEEeccCCCceEEE-ecccceeEeeeecceEEEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEE
Confidence 65 457999999999988877 4556788899999999999999999999864 54444444434445555554332 33
Q ss_pred EEEEeCCCcEEEE
Q 001042 1061 IITGSSDGLLRFW 1073 (1178)
Q Consensus 1061 L~sgs~Dg~I~iw 1073 (1178)
+-.++....+.++
T Consensus 301 ~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 301 ISIAGFSNKLHIL 313 (325)
T ss_pred EEecccceeeeee
Confidence 4444555555554
No 181
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.72 E-value=4.1e-16 Score=175.38 Aligned_cols=265 Identities=18% Similarity=0.286 Sum_probs=203.1
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCC
Q 001042 887 RAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSS 965 (1178)
Q Consensus 887 ~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~ 965 (1178)
.++.|||..|+.+.. ..+.+||...|..+.++++|.+.|.|++|+ +|..+++|+.|..|.+|+-.-...++ ..|.+
T Consensus 18 ~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk--YSH~D 94 (1081)
T KOG1538|consen 18 IAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK--YSHND 94 (1081)
T ss_pred eEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceee--eccCC
Confidence 367899999887765 468999999999999999999999999999 99999999999999999864333222 26889
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEE--cCCEEEEEeCCCcEEEEEcCCCeeeeEec
Q 001042 966 AVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM--DRDTVITGSDDWTARMWSISRGTCDAVLA 1043 (1178)
Q Consensus 966 ~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 1043 (1178)
.|.||.|+|-...+++++-+ ..-+|........+ . .....+.+.+| +|.+++.|-.||+|.+-+ .+++....+.
T Consensus 95 ~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K-~-kss~R~~~CsWtnDGqylalG~~nGTIsiRN-k~gEek~~I~ 170 (1081)
T KOG1538|consen 95 AIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSK-H-KSSSRIICCSWTNDGQYLALGMFNGTISIRN-KNGEEKVKIE 170 (1081)
T ss_pred eeeEeecCchHHHhhhcchh-hccccChhhhhHHh-h-hhheeEEEeeecCCCcEEEEeccCceEEeec-CCCCcceEEe
Confidence 99999999999999988754 46788765443221 1 23446778888 677999999999999987 4455444444
Q ss_pred ---cCCCcEEEEEEecCC-----CEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEEecCCCEEEEEeCCCcEEEE
Q 001042 1044 ---CHAGPVQCVEYSSSD-----RGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLF 1115 (1178)
Q Consensus 1044 ---~h~~~I~~l~~spdg-----~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~Lasgs~Dg~I~iw 1115 (1178)
+..++|++++|+|.. ..++......++.++.++.......+.+ +....+.+.-++|.++..|+.|+.+++|
T Consensus 171 Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L-~FdP~CisYf~NGEy~LiGGsdk~L~~f 249 (1081)
T KOG1538|consen 171 RPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRAL-NFDPCCISYFTNGEYILLGGSDKQLSLF 249 (1081)
T ss_pred CCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccC-CCCchhheeccCCcEEEEccCCCceEEE
Confidence 467899999999963 4577788888888888765321111122 1222334446899999999999999999
Q ss_pred EcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001042 1116 HRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEAT 1175 (1178)
Q Consensus 1116 d~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~ 1175 (1178)
..+. -.+.+......+|+.|+..|++++++.|+.||+|-.|++.
T Consensus 250 TR~G----------------vrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 250 TRDG----------------VRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred eecC----------------eEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 8753 2333444456789999999999999999999999988764
No 182
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=6.7e-17 Score=194.40 Aligned_cols=254 Identities=15% Similarity=0.288 Sum_probs=199.9
Q ss_pred CCcccccCCcceEEEEecCCCCc----ccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEE
Q 001042 760 QPAEASGIGRSWVQSMFSREASS----RSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITAL 833 (1178)
Q Consensus 760 ~~~~~~gh~~~i~~~aFSpdg~~----las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l 833 (1178)
++............++|++.|.. +|.|..| |.+||.+.-... .....+.+...|+|.|..+
T Consensus 56 k~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~-------------~~~~~la~~~~h~G~V~gL 122 (1049)
T KOG0307|consen 56 KPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIAN-------------ASEEVLATKSKHTGPVLGL 122 (1049)
T ss_pred cccccccccccceeeeecccCCCccceeeccccCCceEEecchhhccC-------------cchHHHhhhcccCCceeee
Confidence 45545555677888999999887 7777777 999998853110 0112677888999999999
Q ss_pred EeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEEecCC---CEEEEEeCCCcEEEEEC
Q 001042 834 HCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDR---GKVVSGSDDQSVLVWDK 910 (1178)
Q Consensus 834 ~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~---~~l~sgs~dg~I~iwd~ 910 (1178)
.|++ -.+++||+|+.||.|.|||++.........-......|.+++++. ..|++++.+|.+.|||+
T Consensus 123 DfN~-----------~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDl 191 (1049)
T KOG0307|consen 123 DFNP-----------FQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDL 191 (1049)
T ss_pred eccc-----------cCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccc
Confidence 9984 456699999999999999987422222111122445677776654 46899999999999999
Q ss_pred CCCcEEEEecCCCC--ceEEEEEe--CCCeEEEEeCCC---eEEEEeCCCC-eEEEEecCCCCCEEEEEEeCCC-CEEEE
Q 001042 911 QTSQLLEELKGHDA--QVSCVRML--SGERVLTASHDG---TVKMWDVRTD-TCVATVGRCSSAVLCMEYDDST-GILAA 981 (1178)
Q Consensus 911 ~t~~~~~~l~~h~~--~V~~l~~~--~~~~l~sgs~dg---~V~iwd~~~~-~~~~~~~~~~~~I~~l~~sp~~-~~l~s 981 (1178)
+..+.+-.+..|.+ .+..++|+ ....+++++.|. .|.+||++.- ..++.+.+|...|.++.|++.+ +++++
T Consensus 192 r~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllS 271 (1049)
T KOG0307|consen 192 RKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLS 271 (1049)
T ss_pred cCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhc
Confidence 99888877776655 46789999 345677777653 6999998864 4677788999999999999965 88999
Q ss_pred EeCCCeEEEEECCCCceEEEEecCCccEEEEEEc---CCEEEEEeCCCcEEEEEcCCCe
Q 001042 982 GGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMD---RDTVITGSDDWTARMWSISRGT 1037 (1178)
Q Consensus 982 gs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~ 1037 (1178)
++.|+.|.+|+.++++.+..+....+++..+.|. +..+++++-||.|.|+.+....
T Consensus 272 sgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 272 SGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 9999999999999999999999989999999995 4589999999999999987653
No 183
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.71 E-value=1.1e-15 Score=164.84 Aligned_cols=305 Identities=14% Similarity=0.209 Sum_probs=204.5
Q ss_pred ccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCC-------CceeeEeecccccceEE--EecCCCEEE
Q 001042 827 AGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLR-------GSELRATLKGHTRTVRA--INSDRGKVV 897 (1178)
Q Consensus 827 ~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~-------~~~~~~~l~~h~~~V~~--~s~d~~~l~ 897 (1178)
..+|.++.|.+ .+.+.+|||+.|..|++|.++.. .-+....+..|...|++ |+++|+.|+
T Consensus 13 ~~pv~s~dfq~-----------n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLA 81 (434)
T KOG1009|consen 13 HEPVYSVDFQK-----------NSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLA 81 (434)
T ss_pred CCceEEEEecc-----------CcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeee
Confidence 45788888873 33449999999999999987521 12445678899999986 489999999
Q ss_pred EEeCCCcEEEEECC--------C--------CcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEe
Q 001042 898 SGSDDQSVLVWDKQ--------T--------SQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATV 960 (1178)
Q Consensus 898 sgs~dg~I~iwd~~--------t--------~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~ 960 (1178)
+|+.+|.|.+|... + ....+.+.+|...|..++|+ ++..+++++.|.++++||+..|.....+
T Consensus 82 Sg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~ 161 (434)
T KOG1009|consen 82 SGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAIL 161 (434)
T ss_pred ecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeec
Confidence 99999999999765 2 23345677899999999999 7888999999999999999999999999
Q ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEcCCEEEEEeCCCcEEEEEcCCCeeee
Q 001042 961 GRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDA 1040 (1178)
Q Consensus 961 ~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~ 1040 (1178)
..|...+..++|+|-++++++-+.|...+.+++...+.+..... ..+.+-+..+ ......+++.=++.
T Consensus 162 ~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~--~~m~~~~~~~------~e~~s~rLfhDeTl---- 229 (434)
T KOG1009|consen 162 DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGL--DIMPAKAFNE------REGKSTRLFHDETL---- 229 (434)
T ss_pred cccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeee--eEeeecccCC------CCcceeeeeecCch----
Confidence 99999999999999999999999998777776654433332210 0000000000 01112222221111
Q ss_pred EeccCCCcEEEEEEecCCCEEEEEeC----CCcE-----EEEECCCCceEEEEEecccCCcEEEE---------------
Q 001042 1041 VLACHAGPVQCVEYSSSDRGIITGSS----DGLL-----RFWENDDGGIKCVKNVTIHSSAILSI--------------- 1096 (1178)
Q Consensus 1041 ~~~~h~~~I~~l~~spdg~~L~sgs~----Dg~I-----~iwd~~~~~~~~~~~~~~h~~~i~~i--------------- 1096 (1178)
..-...++|+|+|..+++.+. ++.+ ++++-..-+ ++...+.+......++
T Consensus 230 -----ksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~-rP~~~lp~~~k~~lavr~~pVy~elrp~~~~ 303 (434)
T KOG1009|consen 230 -----KSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLK-RPAARLPSPKKPALAVRFSPVYYELRPLSSE 303 (434)
T ss_pred -----hhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeecccccc-CceeecCCCCcceEEEEeeeeEEEecccccc
Confidence 123456788899988887641 2222 333322111 2222222222222221
Q ss_pred -----ecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEE
Q 001042 1097 -----NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRL 1171 (1178)
Q Consensus 1097 -----s~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~I 1171 (1178)
-|-+..+|+++ .+.|.+||.++.. .+...-.-|-..|++++|++||..|+..|.||...+
T Consensus 304 ~~~~~lpyrlvfaiAt-~~svyvydtq~~~--------------P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 304 KFLFVLPYRLVFAIAT-KNSVYVYDTQTLE--------------PLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred ccccccccceEEEEee-cceEEEecccccc--------------ceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence 12334455554 4689999987431 122223457888999999999999999999997665
Q ss_pred EECC
Q 001042 1172 WEAT 1175 (1178)
Q Consensus 1172 Wdv~ 1175 (1178)
-.++
T Consensus 369 vtfe 372 (434)
T KOG1009|consen 369 VTFE 372 (434)
T ss_pred EEEc
Confidence 4443
No 184
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.71 E-value=1.2e-15 Score=170.98 Aligned_cols=199 Identities=18% Similarity=0.220 Sum_probs=145.7
Q ss_pred CCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCC-------ceEEEEecCCccEEEEEEcC---CEEEEEeCCCcEEEEE
Q 001042 964 SSAVLCMEYDD-STGILAAGGRDAVANIWDIRAG-------RQMHKFLGHTKWIRSIRMDR---DTVITGSDDWTARMWS 1032 (1178)
Q Consensus 964 ~~~I~~l~~sp-~~~~l~sgs~dg~I~lwD~~~~-------~~~~~~~~~~~~v~~l~~~~---~~l~sgs~dg~I~iwd 1032 (1178)
...|+.+.|+| |...|++++.||.|++|.+..+ .+...+..|...|+++.|++ +.|++++.|-+|++||
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD 706 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD 706 (1012)
T ss_pred CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence 34578899999 7788999999999999998754 34566788999999999975 6899999999999999
Q ss_pred cCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecc---cCCcEEEEecCCCEEEEEeCC
Q 001042 1033 ISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTI---HSSAILSINAGDHWLGIGAAD 1109 (1178)
Q Consensus 1033 ~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~---h~~~i~~is~dg~~Lasgs~D 1109 (1178)
+.+++....+.+|.+.|.+++|||+|+.+++.+.||+|++|+-++++ ..+..-.+ ..+.-.-+..+|+++++.+.|
T Consensus 707 l~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e-~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfd 785 (1012)
T KOG1445|consen 707 LANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE-QPVYEGKGPVGTRGARILWACDGRIVIVVGFD 785 (1012)
T ss_pred hhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCC-CccccCCCCccCcceeEEEEecCcEEEEeccc
Confidence 99999999999999999999999999999999999999999988774 23332222 222223457889988887765
Q ss_pred ----CcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCC-EEEEEeCCCcEEEEECC
Q 001042 1110 ----NSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERK-RICSGGRNGLLRLWEAT 1175 (1178)
Q Consensus 1110 ----g~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~-~Las~s~Dg~V~IWdv~ 1175 (1178)
..|.+||.+.. .+..+....+-. ...+.-=.+.+|.+ ++++|-.|..|.+|.+.
T Consensus 786 k~SeRQv~~Y~Aq~l-------~~~pl~t~~lDv-----aps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~ 844 (1012)
T KOG1445|consen 786 KSSERQVQMYDAQTL-------DLRPLYTQVLDV-----APSPLVPHYDYDSNVLFLTGKGDRFVNMYEVI 844 (1012)
T ss_pred ccchhhhhhhhhhhc-------cCCcceeeeecc-----cCccccccccCCCceEEEecCCCceEEEEEec
Confidence 45888887643 111111000000 00000011345554 45677778999998874
No 185
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=1e-15 Score=162.71 Aligned_cols=291 Identities=18% Similarity=0.203 Sum_probs=212.8
Q ss_pred CcccccCCcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEec-ccccceEEEEeee
Q 001042 761 PAEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIR-GHAGAITALHCVT 837 (1178)
Q Consensus 761 ~~~~~gh~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-gH~~~V~~l~fs~ 837 (1178)
.....+|.+-|.++.||.+|++||+|++| +++|.++..... ++..+++... .|...|.|++|.
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~-------------k~~KPI~~~~~~H~SNIF~L~F~- 114 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVR-------------KTPKPIGVMEHPHRSNIFSLEFD- 114 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhh-------------cCCCCceeccCccccceEEEEEc-
Confidence 34568999999999999999999999999 999999854321 1222455444 356899999996
Q ss_pred ccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEE--ecCCCEEEEEeCCCcEEEEECCCCc-
Q 001042 838 KREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQ- 914 (1178)
Q Consensus 838 ~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~--s~d~~~l~sgs~dg~I~iwd~~t~~- 914 (1178)
...+++.+|+.+|+|...|++......+..-....+.|..+ +|..+.+++.+.+|.|.+||.....
T Consensus 115 -----------~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~ 183 (609)
T KOG4227|consen 115 -----------LENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQN 183 (609)
T ss_pred -----------cCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCC
Confidence 67889999999999999998843333223333344577755 7889999999999999999987654
Q ss_pred EEE--EecCCCCceEEEEEe--CCCeEEEEeCCCeEEEEeCCCCeE-EE------EecCCCCCEEEEEEeCCCCEEEEEe
Q 001042 915 LLE--ELKGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTDTC-VA------TVGRCSSAVLCMEYDDSTGILAAGG 983 (1178)
Q Consensus 915 ~~~--~l~~h~~~V~~l~~~--~~~~l~sgs~dg~V~iwd~~~~~~-~~------~~~~~~~~I~~l~~sp~~~~l~sgs 983 (1178)
.+. ...........+.|+ ...++++.+..|.+.+||.+.... +. .+......-.++.|+|+|+.+++--
T Consensus 184 ~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiR 263 (609)
T KOG4227|consen 184 PISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIR 263 (609)
T ss_pred CCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhh
Confidence 221 222334566777888 466788999999999999876432 11 1111123346788999999998877
Q ss_pred CCCeEEEEECCCCce-EEEEecC------CccEEEEEEcCC-EEEEEeCCCcEEEEEcCCC-------------------
Q 001042 984 RDAVANIWDIRAGRQ-MHKFLGH------TKWIRSIRMDRD-TVITGSDDWTARMWSISRG------------------- 1036 (1178)
Q Consensus 984 ~dg~I~lwD~~~~~~-~~~~~~~------~~~v~~l~~~~~-~l~sgs~dg~I~iwd~~~~------------------- 1036 (1178)
....-.+||+-+.++ +.++... ...+.+++|-++ .+++|+.+-.|++|.+...
T Consensus 264 R~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~ 343 (609)
T KOG4227|consen 264 RGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSE 343 (609)
T ss_pred ccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchh
Confidence 666677888877544 3333211 124566777444 6999999999999987431
Q ss_pred ----eeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 001042 1037 ----TCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWEND 1076 (1178)
Q Consensus 1037 ----~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~ 1076 (1178)
+....+++|.+-++.+.|+|...+|++.+..+.+++|.-.
T Consensus 344 ~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 344 IFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred heecceeEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence 2245678999999999999999999999999999999643
No 186
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.69 E-value=2.2e-15 Score=161.34 Aligned_cols=213 Identities=21% Similarity=0.331 Sum_probs=168.8
Q ss_pred ceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEE
Q 001042 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVS 898 (1178)
Q Consensus 819 ~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~s 898 (1178)
..-...||+++|..++|+| .+...+||||.|.+|.||++..++. ...+
T Consensus 73 ~~P~v~GHt~~vLDi~w~P-----------fnD~vIASgSeD~~v~vW~IPe~~l--~~~l------------------- 120 (472)
T KOG0303|consen 73 SYPLVCGHTAPVLDIDWCP-----------FNDCVIASGSEDTKVMVWQIPENGL--TRDL------------------- 120 (472)
T ss_pred CCCCccCccccccccccCc-----------cCCceeecCCCCceEEEEECCCccc--ccCc-------------------
Confidence 3446789999999999997 6788999999999999999762211 1110
Q ss_pred EeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe--CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCC
Q 001042 899 GSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDST 976 (1178)
Q Consensus 899 gs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~--~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~ 976 (1178)
-+++..+.+|...|..++|+ ..+.|++++.|.+|.+||+.+|+.+.++. |.+.|.++.|+.+|
T Consensus 121 --------------tepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dG 185 (472)
T KOG0303|consen 121 --------------TEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDG 185 (472)
T ss_pred --------------ccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCC
Confidence 15677889999999999999 47889999999999999999999988886 99999999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCceEEEEecCCc--cEEEEEE-cCCEEEEEe---CCCcEEEEEcCCCee---eeEeccCCC
Q 001042 977 GILAAGGRDAVANIWDIRAGRQMHKFLGHTK--WIRSIRM-DRDTVITGS---DDWTARMWSISRGTC---DAVLACHAG 1047 (1178)
Q Consensus 977 ~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~--~v~~l~~-~~~~l~sgs---~dg~I~iwd~~~~~~---~~~~~~h~~ 1047 (1178)
..+++++.|..|++||.++++.+..-.+|.+ ....+-. +++.+.+|. .+..+-+||..+-+. ..++. .++
T Consensus 186 s~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSn 264 (472)
T KOG0303|consen 186 SLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSN 264 (472)
T ss_pred ceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEec-cCC
Confidence 9999999999999999999999988878876 3334433 555444443 577899999766433 23343 344
Q ss_pred cEEEEEEecCCCEEEE-EeCCCcEEEEECCCCc
Q 001042 1048 PVQCVEYSSSDRGIIT-GSSDGLLRFWENDDGG 1079 (1178)
Q Consensus 1048 ~I~~l~~spdg~~L~s-gs~Dg~I~iwd~~~~~ 1079 (1178)
.|.---|++|.+.+.. |-.|+.|+.|.+.+..
T Consensus 265 Gvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 265 GVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred ceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 5666677888887754 4489999999998763
No 187
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=1.8e-14 Score=145.18 Aligned_cols=262 Identities=15% Similarity=0.266 Sum_probs=192.9
Q ss_pred ccCCCCEEEEEeCCCcEEEEcCCC--------CCceeeEeecccccceEEEecCCCEEEEEeCCCcEEEEECCCCcE---
Q 001042 847 DREDAGFFISGSTDCLVKIWDPSL--------RGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQL--- 915 (1178)
Q Consensus 847 ~s~d~~~Lasgs~Dg~I~iWd~~~--------~~~~~~~~l~~h~~~V~~~s~d~~~l~sgs~dg~I~iwd~~t~~~--- 915 (1178)
++|.+++|++|+.+|+|-+..++. .+...+...++|.+++..+......|++|+. |.|+-|..+....
T Consensus 18 ~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E~~es~~ 96 (325)
T KOG0649|consen 18 ISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNEEEESLA 96 (325)
T ss_pred hCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccC-ceEEEeeehhhhhhcc
Confidence 348899999999999999998651 2334455668999999988777778888775 9999998754322
Q ss_pred ---EEEe--cCCC-----CceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeC
Q 001042 916 ---LEEL--KGHD-----AQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGR 984 (1178)
Q Consensus 916 ---~~~l--~~h~-----~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~ 984 (1178)
+... .-|. ..|+++... ..+-++.++.|+.++-||+++|+...++++|.+.+.++.--.....+++|+.
T Consensus 97 ~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~E 176 (325)
T KOG0649|consen 97 TKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAE 176 (325)
T ss_pred chhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCC
Confidence 1111 1122 346777665 4555667779999999999999999999999999999998666667889999
Q ss_pred CCeEEEEECCCCceEEEEec----------CCccEEEEEEcCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEE
Q 001042 985 DAVANIWDIRAGRQMHKFLG----------HTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEY 1054 (1178)
Q Consensus 985 dg~I~lwD~~~~~~~~~~~~----------~~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~ 1054 (1178)
||++++||.++++.+..+.. ...+|-+++.+.+.+++|+. ..+.+|.++..++..++. -..++..+.|
T Consensus 177 DGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG-p~lslwhLrsse~t~vfp-ipa~v~~v~F 254 (325)
T KOG0649|consen 177 DGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG-PKLSLWHLRSSESTCVFP-IPARVHLVDF 254 (325)
T ss_pred CccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC-CceeEEeccCCCceEEEe-cccceeEeee
Confidence 99999999999999877642 23478899999999998865 479999999998888876 4567888888
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEEec--C-CCEEEEEeCCCcEEEEE
Q 001042 1055 SSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSINA--G-DHWLGIGAADNSMSLFH 1116 (1178)
Q Consensus 1055 spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is~--d-g~~Lasgs~Dg~I~iwd 1116 (1178)
. .+.+++++..+.|.-|.+.. ......+..+..+++.+. . -+++-.++..+.+.|+.
T Consensus 255 ~--~d~vl~~G~g~~v~~~~l~G---vl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 255 V--DDCVLIGGEGNHVQSYTLNG---VLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred e--cceEEEeccccceeeeeecc---EEEEeccCCccceeeecccCCceEEEEecccceeeeeee
Confidence 7 45688888888999998764 333334443333433321 1 23444555556665553
No 188
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=3.2e-15 Score=159.07 Aligned_cols=297 Identities=14% Similarity=0.170 Sum_probs=215.7
Q ss_pred eEeecccccceEEE--ecCCCEEEEEeCCCcEEEEECCC------CcEEEEec-CCCCceEEEEEe-CCCeEEEEeCCCe
Q 001042 876 RATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQT------SQLLEELK-GHDAQVSCVRML-SGERVLTASHDGT 945 (1178)
Q Consensus 876 ~~~l~~h~~~V~~~--s~d~~~l~sgs~dg~I~iwd~~t------~~~~~~l~-~h~~~V~~l~~~-~~~~l~sgs~dg~ 945 (1178)
.+.+.+|.+.|.++ +.++++|++|+.|..+++|+++. .+++.... .|...|.|++|. .+..+++|+.+|+
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence 35677899999975 78899999999999999999853 35555443 355899999999 5667889999999
Q ss_pred EEEEeCCCCeEEEEecC--CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-eEE--EEecCCccEEEEEEc---CC
Q 001042 946 VKMWDVRTDTCVATVGR--CSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGR-QMH--KFLGHTKWIRSIRMD---RD 1017 (1178)
Q Consensus 946 V~iwd~~~~~~~~~~~~--~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~-~~~--~~~~~~~~v~~l~~~---~~ 1017 (1178)
|...|+.+.+.+..+.. ..+.|..+..+|..+.+++.+.+|.|.+||.+... .+. ..........++.|+ +.
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~ 208 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPA 208 (609)
T ss_pred eEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCce
Confidence 99999999988777643 34589999999999999999999999999998754 222 222344456677775 45
Q ss_pred EEEEEeCCCcEEEEEcCCCee-eeE------eccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccC
Q 001042 1018 TVITGSDDWTARMWSISRGTC-DAV------LACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHS 1090 (1178)
Q Consensus 1018 ~l~sgs~dg~I~iwd~~~~~~-~~~------~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~ 1090 (1178)
.|++.+..+-+-+||.+.... +.. +......-.++.|+|+|+.+.+--....-.+||+.+.. ..+.... |.
T Consensus 209 Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R-~~V~k~D-~N 286 (609)
T KOG4227|consen 209 LILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQR-CFVLKSD-HN 286 (609)
T ss_pred eEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccc-ceeEecc-CC
Confidence 899999999999999876432 111 11112223578899999999887666666788887753 2222222 22
Q ss_pred C-------cEEEEe-cCCCEEEEEeCCCcEEEEEcCCCc-cccccCCCC---C----ccceeEeeccCCCcccEEEEEEc
Q 001042 1091 S-------AILSIN-AGDHWLGIGAADNSMSLFHRPQER-LGGFSGTGS---K----MSGWQLYRTPQKTVAVVRCIASD 1154 (1178)
Q Consensus 1091 ~-------~i~~is-~dg~~Lasgs~Dg~I~iwd~~~~~-~~~~~~~g~---~----~~~~~~~~~~~~h~~~V~~lafs 1154 (1178)
. .+.++. .+...+++|+.+-.|++|.++... ..++..-|. . +..-.....++||...++.|.|+
T Consensus 287 ~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~ 366 (609)
T KOG4227|consen 287 PNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFS 366 (609)
T ss_pred CCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeec
Confidence 1 122222 345569999999999999987432 222222222 1 11123456788999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEEC
Q 001042 1155 LERKRICSGGRNGLLRLWEA 1174 (1178)
Q Consensus 1155 pdg~~Las~s~Dg~V~IWdv 1174 (1178)
|...+|++.|....++||.-
T Consensus 367 ~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 367 QHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred CCcceEeccchhhheecccc
Confidence 99999999999999999964
No 189
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=6.4e-16 Score=163.17 Aligned_cols=267 Identities=19% Similarity=0.319 Sum_probs=196.0
Q ss_pred Ccccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceeccccccCCCCEEEEEe
Q 001042 781 SSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGS 858 (1178)
Q Consensus 781 ~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs 858 (1178)
+.+|++-+. |++||..+++ .+..+++|...++.+.|... .....+.+|+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~-------------------~l~~fk~~~~~~N~vrf~~~----------ds~h~v~s~s 91 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQ-------------------LLEEFKGPPATTNGVRFISC----------DSPHGVISCS 91 (376)
T ss_pred eeEEEEecCCeEEEEeccchh-------------------hhheecCCCCcccceEEecC----------CCCCeeEEec
Confidence 345555444 9999999988 68889999999999999721 2567889999
Q ss_pred CCCcEEEEcCCCCCceeeEeecccc-cceEEEe--cCCCEEEEEe----CCCcEEEEECCCCcE-EEE-ecCCCCceEEE
Q 001042 859 TDCLVKIWDPSLRGSELRATLKGHT-RTVRAIN--SDRGKVVSGS----DDQSVLVWDKQTSQL-LEE-LKGHDAQVSCV 929 (1178)
Q Consensus 859 ~Dg~I~iWd~~~~~~~~~~~l~~h~-~~V~~~s--~d~~~l~sgs----~dg~I~iwd~~t~~~-~~~-l~~h~~~V~~l 929 (1178)
.||+|++||+.......+....++. .+..++. ..++.+++|+ .+-.+.+||++..+. +.. ...|...|+++
T Consensus 92 sDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~l 171 (376)
T KOG1188|consen 92 SDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQL 171 (376)
T ss_pred cCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeE
Confidence 9999999999877777777777777 3444664 4677777775 467899999998766 444 45799999999
Q ss_pred EEe--CCCeEEEEeCCCeEEEEeCCCCeE---EEEecCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCceEEEEe
Q 001042 930 RML--SGERVLTASHDGTVKMWDVRTDTC---VATVGRCSSAVLCMEYDDST-GILAAGGRDAVANIWDIRAGRQMHKFL 1003 (1178)
Q Consensus 930 ~~~--~~~~l~sgs~dg~V~iwd~~~~~~---~~~~~~~~~~I~~l~~sp~~-~~l~sgs~dg~I~lwD~~~~~~~~~~~ 1003 (1178)
.|+ +.+.+++|+.||.|.++|++.... +...-.+...|.++.|..++ +.+.+-+..+...+|+++.+.+...+.
T Consensus 172 rFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~ 251 (376)
T KOG1188|consen 172 RFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLE 251 (376)
T ss_pred EecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhccc
Confidence 999 678999999999999999976532 22223566789999998876 458888899999999999887654443
Q ss_pred cCC-------------ccEEEEEE-cCCEEEEEeC-CCcEEEEEcC---C---CeeeeEecc-CCCcEEEEEEecCCCEE
Q 001042 1004 GHT-------------KWIRSIRM-DRDTVITGSD-DWTARMWSIS---R---GTCDAVLAC-HAGPVQCVEYSSSDRGI 1061 (1178)
Q Consensus 1004 ~~~-------------~~v~~l~~-~~~~l~sgs~-dg~I~iwd~~---~---~~~~~~~~~-h~~~I~~l~~spdg~~L 1061 (1178)
... .-|.+... +.+..+.++. -+...++-+. + .+.+..+.+ |..-|.++.|...+..+
T Consensus 252 ~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l 331 (376)
T KOG1188|consen 252 NPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVL 331 (376)
T ss_pred CccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhccccee
Confidence 211 11222222 2334444443 5555555433 2 344555665 66778899999999999
Q ss_pred EEEeCCCcEEEEECC
Q 001042 1062 ITGSSDGLLRFWEND 1076 (1178)
Q Consensus 1062 ~sgs~Dg~I~iwd~~ 1076 (1178)
.|||.||.+.+|...
T Consensus 332 ~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 332 YTGGEDGLLQAWKVE 346 (376)
T ss_pred eccCCCceEEEEecC
Confidence 999999999999864
No 190
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=2.1e-15 Score=178.24 Aligned_cols=274 Identities=17% Similarity=0.341 Sum_probs=200.7
Q ss_pred EEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecc---cccceEEEEeeeccceecccccc
Q 001042 774 SMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRG---HAGAITALHCVTKREVWDLVGDR 848 (1178)
Q Consensus 774 ~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g---H~~~V~~l~fs~~~~~~~~~~~s 848 (1178)
+.|+|=...++++.+. |+|||.+.+.. +..+.. ....|+.+.+.+.
T Consensus 1070 ~~~hpf~p~i~~ad~r~~i~vwd~e~~~~-------------------l~~F~n~~~~~t~Vs~l~liNe---------- 1120 (1387)
T KOG1517|consen 1070 LKFHPFEPQIAAADDRERIRVWDWEKGRL-------------------LNGFDNGAFPDTRVSDLELINE---------- 1120 (1387)
T ss_pred eeecCCCceeEEcCCcceEEEEecccCce-------------------eccccCCCCCCCccceeeeecc----------
Confidence 4788888888887755 99999997773 222222 3456888888742
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCC---CceeeEeecc---------cccceEEEecCCCEEEEEeCCCcEEEEECCCCcEE
Q 001042 849 EDAGFFISGSTDCLVKIWDPSLR---GSELRATLKG---------HTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLL 916 (1178)
Q Consensus 849 ~d~~~Lasgs~Dg~I~iWd~~~~---~~~~~~~l~~---------h~~~V~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~ 916 (1178)
.|..++++|+.||.||||+-... ..+++....+ ..+.+++|.....+|+++|.-..|+|||....+.+
T Consensus 1121 ~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~ 1200 (1387)
T KOG1517|consen 1121 QDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVV 1200 (1387)
T ss_pred cchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeE
Confidence 67789999999999999984322 2233332221 22345567666667777777899999999988888
Q ss_pred EEec-CCCCceEEEEEe--CCCeEEEEeCCCeEEEEeCCCCe---EEEEecCCCCC--EEEEEEeCCCC-EEEEEeCCCe
Q 001042 917 EELK-GHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTDT---CVATVGRCSSA--VLCMEYDDSTG-ILAAGGRDAV 987 (1178)
Q Consensus 917 ~~l~-~h~~~V~~l~~~--~~~~l~sgs~dg~V~iwd~~~~~---~~~~~~~~~~~--I~~l~~sp~~~-~l~sgs~dg~ 987 (1178)
..+. +.+..|+++.-. .++.+++|..||.|++||.+... .+...+.|... |..+.+.+.|- .|++|+.||.
T Consensus 1201 ~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~ 1280 (1387)
T KOG1517|consen 1201 ADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD 1280 (1387)
T ss_pred eecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCe
Confidence 7765 345567777655 57999999999999999987643 45666777776 99999988665 4999999999
Q ss_pred EEEEECCCCceEE--EEecCC--c-cEEEEEEcC--CEEEEEeCCCcEEEEEcCCCeeeeEecc-------CCCcEEEEE
Q 001042 988 ANIWDIRAGRQMH--KFLGHT--K-WIRSIRMDR--DTVITGSDDWTARMWSISRGTCDAVLAC-------HAGPVQCVE 1053 (1178)
Q Consensus 988 I~lwD~~~~~~~~--~~~~~~--~-~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~-------h~~~I~~l~ 1053 (1178)
|++||++...... +...|. + ..+++..+. ..+|+|+. +.|+||++. |+.+..++. ..+.+.|++
T Consensus 1281 I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~ 1358 (1387)
T KOG1517|consen 1281 IQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLA 1358 (1387)
T ss_pred EEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceee
Confidence 9999999853222 222222 3 488888854 48888888 999999975 444443332 235689999
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCC
Q 001042 1054 YSSSDRGIITGSSDGLLRFWENDDG 1078 (1178)
Q Consensus 1054 ~spdg~~L~sgs~Dg~I~iwd~~~~ 1078 (1178)
|+|..-.+++|+.|.+|.+|....+
T Consensus 1359 FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1359 FHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred ecchhHhhhhccCCceEEEeecCCc
Confidence 9999999999999999999987765
No 191
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=4.7e-16 Score=173.96 Aligned_cols=260 Identities=18% Similarity=0.276 Sum_probs=195.1
Q ss_pred ccccCCcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccc
Q 001042 763 EASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKRE 840 (1178)
Q Consensus 763 ~~~gh~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~ 840 (1178)
....|-..+...+|.|-...+++++.+ +.+|+++.... .......++.++++|.++|.|++++
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~-----------s~~~~~epi~tfraH~gPVl~v~v~---- 353 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKK-----------SAEKDVEPILTFRAHEGPVLCVVVP---- 353 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCC-----------ccccceeeeEEEecccCceEEEEec----
Confidence 345666778888999999999999999 99999953221 1112234789999999999999997
Q ss_pred eeccccccCCCCEEEEEeCCCcEEEEcCCCC--------CceeeEeecccccceEE--EecCCCEEEEEeCCCcEEEEEC
Q 001042 841 VWDLVGDREDAGFFISGSTDCLVKIWDPSLR--------GSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDK 910 (1178)
Q Consensus 841 ~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~--------~~~~~~~l~~h~~~V~~--~s~d~~~l~sgs~dg~I~iwd~ 910 (1178)
+++..+.+||.||+|+.|++..+ ...+...+.||.+.|+. ++.....|++++.||+++.|+.
T Consensus 354 --------~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~ 425 (577)
T KOG0642|consen 354 --------SNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEP 425 (577)
T ss_pred --------CCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeecc
Confidence 89999999999999999965411 12345678899999985 4788888999999999999998
Q ss_pred CCCcEEEEecCC--CCceEEEEEeCC--CeEEEEeCCCeEEEEeCCCCeEEEEecCC-------CCCEEEEEEeCCCCEE
Q 001042 911 QTSQLLEELKGH--DAQVSCVRMLSG--ERVLTASHDGTVKMWDVRTDTCVATVGRC-------SSAVLCMEYDDSTGIL 979 (1178)
Q Consensus 911 ~t~~~~~~l~~h--~~~V~~l~~~~~--~~l~sgs~dg~V~iwd~~~~~~~~~~~~~-------~~~I~~l~~sp~~~~l 979 (1178)
..... .++... .+.-.++.+.+. .+.++...-+.-.+.+...+..+..+... ...+.-+.++|.+.+.
T Consensus 426 ~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~ 504 (577)
T KOG0642|consen 426 TEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADIT 504 (577)
T ss_pred CCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCee
Confidence 76665 333322 223344554422 22233333333344455444444443221 2456778899999999
Q ss_pred EEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEcCC--EEEEEeCCCcEEEEEcCCCeeeeEeccCC
Q 001042 980 AAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRGTCDAVLACHA 1046 (1178)
Q Consensus 980 ~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~--~l~sgs~dg~I~iwd~~~~~~~~~~~~h~ 1046 (1178)
+++..|+.|+++|..+++.+.....|...+++++++++ ++++|+.||.+++|.+....++.....|.
T Consensus 505 ~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 505 FTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred EecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence 99999999999999999999999999999999999655 99999999999999998888877766664
No 192
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.66 E-value=1.5e-15 Score=154.84 Aligned_cols=242 Identities=18% Similarity=0.288 Sum_probs=180.5
Q ss_pred ceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeec-ccccceEEE-ecCCCEE
Q 001042 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLK-GHTRTVRAI-NSDRGKV 896 (1178)
Q Consensus 819 ~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~-~h~~~V~~~-s~d~~~l 896 (1178)
+...|++|.+.|+++.| ....+|.+|..-|.|++|++. +......++ .|...|+.+ +--+..+
T Consensus 6 P~fvLRp~~~~v~s~~f-------------qa~~rL~sg~~~G~V~~w~lq--t~r~~~~~r~~g~~~it~lq~~p~d~l 70 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLF-------------QANERLMSGLSVGIVKMWVLQ--TERDLPLIRLFGRLFITNLQSIPNDSL 70 (323)
T ss_pred CeeEeccccchheehhh-------------ccchhhhcccccceEEEEEee--cCccchhhhhhccceeeceeecCCcch
Confidence 67788999999999998 445569999999999999976 344444555 456677766 3334778
Q ss_pred EEEeCCCcEEEEECCCCcEEE---------------------------Eec--------------------------CCC
Q 001042 897 VSGSDDQSVLVWDKQTSQLLE---------------------------ELK--------------------------GHD 923 (1178)
Q Consensus 897 ~sgs~dg~I~iwd~~t~~~~~---------------------------~l~--------------------------~h~ 923 (1178)
.+-+.|+.+.+|++.-+..+. .+. +..
T Consensus 71 ~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Kl 150 (323)
T KOG0322|consen 71 DTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKL 150 (323)
T ss_pred hhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhcccc
Confidence 899999999999876422110 000 112
Q ss_pred CceEEEEEe--CCC--eEEEEeCCCeEEEEeCCCCeEE----------EEecCCCCCEEEEEEeCCCCEEEEEeCCCeEE
Q 001042 924 AQVSCVRML--SGE--RVLTASHDGTVKMWDVRTDTCV----------ATVGRCSSAVLCMEYDDSTGILAAGGRDAVAN 989 (1178)
Q Consensus 924 ~~V~~l~~~--~~~--~l~sgs~dg~V~iwd~~~~~~~----------~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~ 989 (1178)
+.+.|..+. .+. .+++|.++|.|.+||+.++..+ .....|..+|.++.|.+....=++|+.+..+.
T Consensus 151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~ 230 (323)
T KOG0322|consen 151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLV 230 (323)
T ss_pred CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccce
Confidence 334555543 233 3668889999999999998433 33346788999999998766667888888899
Q ss_pred EEECCCC--ce-E-EEEecCCccEEEE--EEcCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEE
Q 001042 990 IWDIRAG--RQ-M-HKFLGHTKWIRSI--RMDRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIIT 1063 (1178)
Q Consensus 990 lwD~~~~--~~-~-~~~~~~~~~v~~l--~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~s 1063 (1178)
.|++... .. + .......-.|..+ ..+++.+++++.||.||+|+.++..++..++-|.+.|++++|+|+...+|+
T Consensus 231 ~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAa 310 (323)
T KOG0322|consen 231 MYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAA 310 (323)
T ss_pred eeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhh
Confidence 9987643 22 1 1122222334444 457789999999999999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEEC
Q 001042 1064 GSSDGLLRFWEN 1075 (1178)
Q Consensus 1064 gs~Dg~I~iwd~ 1075 (1178)
+|.|++|.+|++
T Consensus 311 askD~rISLWkL 322 (323)
T KOG0322|consen 311 ASKDARISLWKL 322 (323)
T ss_pred ccCCceEEeeec
Confidence 999999999986
No 193
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.66 E-value=1.4e-14 Score=149.46 Aligned_cols=286 Identities=16% Similarity=0.240 Sum_probs=196.3
Q ss_pred CCcEEEEcCCCCCcee-eEeecccccceEEE--ecCC-CEEEEEeCC-------CcEEEEECCCC---------cEEEEe
Q 001042 860 DCLVKIWDPSLRGSEL-RATLKGHTRTVRAI--NSDR-GKVVSGSDD-------QSVLVWDKQTS---------QLLEEL 919 (1178)
Q Consensus 860 Dg~I~iWd~~~~~~~~-~~~l~~h~~~V~~~--s~d~-~~l~sgs~d-------g~I~iwd~~t~---------~~~~~l 919 (1178)
|+.|.+-+++..+..+ ...+..|.+.|+.+ +|-. ..|+++..+ -.+.||.+... +++..+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 6788887776544444 35677788899977 4544 455555432 24779987542 233344
Q ss_pred c-CCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeE-EEEec-----CCCCCEEEEEEeC--CCCEEEEEeCCCeEE
Q 001042 920 K-GHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTC-VATVG-----RCSSAVLCMEYDD--STGILAAGGRDAVAN 989 (1178)
Q Consensus 920 ~-~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~-~~~~~-----~~~~~I~~l~~sp--~~~~l~sgs~dg~I~ 989 (1178)
. .+-+.|.|+.|. +++.+++-. |..|.+|++..+.. +..+. .+....++-+|+| +|+.+++. .|+++.
T Consensus 119 dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~ 196 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQ 196 (370)
T ss_pred CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEE
Confidence 3 455689999999 455565554 88999999988765 33332 2355678889998 67777665 588999
Q ss_pred EEECCCCceEEEEe-cCCccEEEEEEcCC---EEEEEeCCCcEEEEEcCC-CeeeeEeccCCCcEEEEEEecC-CCEEEE
Q 001042 990 IWDIRAGRQMHKFL-GHTKWIRSIRMDRD---TVITGSDDWTARMWSISR-GTCDAVLACHAGPVQCVEYSSS-DRGIIT 1063 (1178)
Q Consensus 990 lwD~~~~~~~~~~~-~~~~~v~~l~~~~~---~l~sgs~dg~I~iwd~~~-~~~~~~~~~h~~~I~~l~~spd-g~~L~s 1063 (1178)
.||+++.++...+. .|...|..+.++++ +|++++.||.|++||.++ ..++.++.+|..+|+++.|+|. .+.+++
T Consensus 197 ~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs 276 (370)
T KOG1007|consen 197 FWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILS 276 (370)
T ss_pred EEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEe
Confidence 99999988776654 68889999999887 899999999999999986 4678899999999999999996 456889
Q ss_pred EeCCCcEEEEECCCCceEEEEEecccCCcEEEEecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCC
Q 001042 1064 GSSDGLLRFWENDDGGIKCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQK 1143 (1178)
Q Consensus 1064 gs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~ 1143 (1178)
||+|..|.+|...+-..+....+. +.. + -..|. |.. .+ .....+ ..+.++..
T Consensus 277 ~~SDs~V~Lsca~svSSE~qi~~~-~de-----s--------e~e~~-----dse-er-~kpL~d-------g~l~tyde 328 (370)
T KOG1007|consen 277 GGSDSAVNLSCASSVSSEQQIEFE-DDE-----S--------ESEDE-----DSE-ER-VKPLQD-------GQLETYDE 328 (370)
T ss_pred cCCCceeEEEeccccccccccccc-ccc-----c--------cCcch-----hhH-Hh-cccccc-------cccccccc
Confidence 999999999986543111100000 000 0 00000 000 00 000111 23456778
Q ss_pred CcccEEEEEEcCCCC-EEEEEeCCCcEEEEECC
Q 001042 1144 TVAVVRCIASDLERK-RICSGGRNGLLRLWEAT 1175 (1178)
Q Consensus 1144 h~~~V~~lafspdg~-~Las~s~Dg~V~IWdv~ 1175 (1178)
|.+.|.+++||.-.. .+||-+.||.+.|=++.
T Consensus 329 hEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 329 HEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred cccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 999999999987554 57788999999886654
No 194
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.65 E-value=2.5e-16 Score=181.68 Aligned_cols=276 Identities=20% Similarity=0.339 Sum_probs=214.5
Q ss_pred CcccccCCcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeec
Q 001042 761 PAEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTK 838 (1178)
Q Consensus 761 ~~~~~gh~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~ 838 (1178)
..++.||-..|.|++|...|.++++|++| |+||..+++. ++....||++.|+.++.+
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~-------------------~lAs~rGhs~ditdlavs-- 241 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETAR-------------------CLASCRGHSGDITDLAVS-- 241 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchh-------------------hhccCCCCccccchhccc--
Confidence 35578999999999999999999999999 9999999888 888999999999999987
Q ss_pred cceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 001042 839 REVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEE 918 (1178)
Q Consensus 839 ~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~ 918 (1178)
.+..++|++|.|..|++|.+. ....+..+.||++.|+++..... .+.+.||++++||.+ ......
T Consensus 242 ----------~~n~~iaaaS~D~vIrvWrl~--~~~pvsvLrghtgavtaiafsP~--~sss~dgt~~~wd~r-~~~~~y 306 (1113)
T KOG0644|consen 242 ----------SNNTMIAAASNDKVIRVWRLP--DGAPVSVLRGHTGAVTAIAFSPR--ASSSDDGTCRIWDAR-LEPRIY 306 (1113)
T ss_pred ----------hhhhhhhhcccCceEEEEecC--CCchHHHHhccccceeeeccCcc--ccCCCCCceEecccc-cccccc
Confidence 678889999999999999965 67788999999999998733222 278899999999987 222111
Q ss_pred e----c-CCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCC-CCEEEEEeCCCeEEEE
Q 001042 919 L----K-GHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDS-TGILAAGGRDAVANIW 991 (1178)
Q Consensus 919 l----~-~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~-~~~l~sgs~dg~I~lw 991 (1178)
. + ....-+..+.+. .+..++||+.|+.-..|....-.+ +...+.-+..+.+ ..+.+++-.+-.+.+|
T Consensus 307 ~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~ar~~~~~~vw 380 (1113)
T KOG0644|consen 307 VPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTARNDHRLCVW 380 (1113)
T ss_pred CCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhh------hccceEEEeccccccccceeeeeeeEeeee
Confidence 1 1 112344555554 678899999999998887643211 1111111111111 2455667778889999
Q ss_pred ECCCCceEEEEecCCccEEEEEE---cCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCC
Q 001042 992 DIRAGRQMHKFLGHTKWIRSIRM---DRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDG 1068 (1178)
Q Consensus 992 D~~~~~~~~~~~~~~~~v~~l~~---~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg 1068 (1178)
++.+|...+.+.+|...+..+.+ ++....+++.||...|||+-.|.+++.+....+.+...+||++|..++....-|
T Consensus 381 nl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hg 460 (1113)
T KOG0644|consen 381 NLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHG 460 (1113)
T ss_pred ecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCC
Confidence 99999999999999999988887 455788999999999999999988777654456777889999999999988889
Q ss_pred cEEEEECCCC
Q 001042 1069 LLRFWENDDG 1078 (1178)
Q Consensus 1069 ~I~iwd~~~~ 1078 (1178)
.+.|.....+
T Consensus 461 ql~i~g~gqs 470 (1113)
T KOG0644|consen 461 QLYILGTGQS 470 (1113)
T ss_pred ceEEeccCCC
Confidence 9988875544
No 195
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.64 E-value=4.1e-16 Score=179.98 Aligned_cols=276 Identities=19% Similarity=0.302 Sum_probs=217.7
Q ss_pred ceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEE--EecCCCEE
Q 001042 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKV 896 (1178)
Q Consensus 819 ~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~--~s~d~~~l 896 (1178)
.++.|.||..+|+|+.|- ..|.++++|+.|..|+||..+ +..+.....||.+.++. ++.++..+
T Consensus 182 ~ikrLlgH~naVyca~fD------------rtg~~Iitgsdd~lvKiwS~e--t~~~lAs~rGhs~ditdlavs~~n~~i 247 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFD------------RTGRYIITGSDDRLVKIWSME--TARCLASCRGHSGDITDLAVSSNNTMI 247 (1113)
T ss_pred HHHHHHhhhhheeeeeec------------cccceEeecCccceeeeeecc--chhhhccCCCCccccchhccchhhhhh
Confidence 567789999999999985 889999999999999999954 77788999999999995 46777889
Q ss_pred EEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEe-----cCCCCCEEEEE
Q 001042 897 VSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATV-----GRCSSAVLCME 971 (1178)
Q Consensus 897 ~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~-----~~~~~~I~~l~ 971 (1178)
++++.|..|++|.+.++.++..+.+|++.|++++|++-. +.+.||++++||.+- ...... ....+.+.++.
T Consensus 248 aaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r~-~~~~y~prp~~~~~~~~~~s~~ 323 (1113)
T KOG0644|consen 248 AAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARL-EPRIYVPRPLKFTEKDLVDSIL 323 (1113)
T ss_pred hhcccCceEEEEecCCCchHHHHhccccceeeeccCccc---cCCCCCceEeccccc-cccccCCCCCCcccccceeeee
Confidence 999999999999999999999999999999999998643 788999999999871 111111 01235567778
Q ss_pred EeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEE---cCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCc
Q 001042 972 YDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM---DRDTVITGSDDWTARMWSISRGTCDAVLACHAGP 1048 (1178)
Q Consensus 972 ~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~---~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~ 1048 (1178)
+...+..+++|+.|+.-..|....-. .+...+.-+.. ...+.+++-.+..+++|++.+|...+.+.+|...
T Consensus 324 ~~~~~~~f~Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~ 397 (1113)
T KOG0644|consen 324 FENNGDRFLTGSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDE 397 (1113)
T ss_pred ccccccccccccCCcccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccc
Confidence 88888889999999988888754321 11111111111 1236667777888999999999999999999999
Q ss_pred EEEEEEecCCCE-EEEEeCCCcEEEEECCCCceEEEEEecccCCcEE-EEecCCCEEEEEeCCCcEEEEEcCC
Q 001042 1049 VQCVEYSSSDRG-IITGSSDGLLRFWENDDGGIKCVKNVTIHSSAIL-SINAGDHWLGIGAADNSMSLFHRPQ 1119 (1178)
Q Consensus 1049 I~~l~~spdg~~-L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~-~is~dg~~Lasgs~Dg~I~iwd~~~ 1119 (1178)
+..+.++|-... ..+++.||...|||+-.|....... .+|...+. .+|+||..++....-|.+.|.....
T Consensus 398 ~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~-~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gq 469 (1113)
T KOG0644|consen 398 VYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYF-IGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQ 469 (1113)
T ss_pred eeeeeecCCCcHhhhhccCCCceEeeecccCCcceeee-cccceeeccccCCCCceEecCCCCCceEEeccCC
Confidence 999999997655 4578899999999999885443333 45666554 4599999999888889999887653
No 196
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=1.7e-13 Score=161.45 Aligned_cols=320 Identities=14% Similarity=0.185 Sum_probs=229.0
Q ss_pred eEEEEecCCCCcccccccc-eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceeccccccC
Q 001042 771 WVQSMFSREASSRSHSFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDRE 849 (1178)
Q Consensus 771 i~~~aFSpdg~~las~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~ 849 (1178)
-.++++++.|++.+..-.. +.+|.+.++..... ....-..|+..+++.++| |
T Consensus 163 ~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~---------------~~~~~~~Htf~~t~~~~s------------p 215 (792)
T KOG1963|consen 163 PKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTS---------------SRDITVHHTFNITCVALS------------P 215 (792)
T ss_pred CccEEEcCCceEEEEEEeeeEEEEEecccceeec---------------cchhhhhhcccceeEEec------------c
Confidence 3456899999988887777 99999886441110 112233577778999988 8
Q ss_pred CCCEEEEEeCCCcEEEEcCCC--CCceeeEeecccccceEE--EecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCc
Q 001042 850 DAGFFISGSTDCLVKIWDPSL--RGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQ 925 (1178)
Q Consensus 850 d~~~Lasgs~Dg~I~iWd~~~--~~~~~~~~l~~h~~~V~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~ 925 (1178)
+++++|+|..||.|.+|.--. ........+.-|...|.+ |+++|.+|++||..|.+.+|.+++++ .+-+..-.++
T Consensus 216 n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~ 294 (792)
T KOG1963|consen 216 NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSP 294 (792)
T ss_pred ccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCe
Confidence 999999999999999997332 233445677788777774 68999999999999999999999998 5667778899
Q ss_pred eEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecC-----------CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 001042 926 VSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGR-----------CSSAVLCMEYDDSTGILAAGGRDAVANIWDI 993 (1178)
Q Consensus 926 V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~-----------~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~ 993 (1178)
|..+.++ +++..+....|+.|.+....+.....++.+ ..+-.+.++++|..+.++..+..|.|.+||+
T Consensus 295 I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl 374 (792)
T KOG1963|consen 295 ILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDL 374 (792)
T ss_pred eEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEec
Confidence 9999999 788888899999999998866554444332 1344678899997778888889999999999
Q ss_pred CCCceEEEEec-----CC------ccEEEEEE--cCCEEEEEe--------CCC--cEEEEEcCCCeeeeE-----eccC
Q 001042 994 RAGRQMHKFLG-----HT------KWIRSIRM--DRDTVITGS--------DDW--TARMWSISRGTCDAV-----LACH 1045 (1178)
Q Consensus 994 ~~~~~~~~~~~-----~~------~~v~~l~~--~~~~l~sgs--------~dg--~I~iwd~~~~~~~~~-----~~~h 1045 (1178)
-+.+.+..+.. +. ..+++++. .+++++|+- .|| .+++|-......-.. ...|
T Consensus 375 ~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH 454 (792)
T KOG1963|consen 375 YTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPH 454 (792)
T ss_pred cccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCC
Confidence 98877665531 11 13444443 466777653 233 478897655433222 2357
Q ss_pred CCcEEEEEEecC-CC-EEEEEeCCCcEEEEECCCC--------ceEEEEEecccCCcEE--EEecCCCEEEEEeCCCcEE
Q 001042 1046 AGPVQCVEYSSS-DR-GIITGSSDGLLRFWENDDG--------GIKCVKNVTIHSSAIL--SINAGDHWLGIGAADNSMS 1113 (1178)
Q Consensus 1046 ~~~I~~l~~spd-g~-~L~sgs~Dg~I~iwd~~~~--------~~~~~~~~~~h~~~i~--~is~dg~~Lasgs~Dg~I~ 1113 (1178)
...+...++.+. .. ..++++.||.+++|-..+. .+.|...-..|...+. +++.||..|++ +.|++|.
T Consensus 455 ~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~-s~~~~It 533 (792)
T KOG1963|consen 455 GNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAV-SFDDTIT 533 (792)
T ss_pred CceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEE-ecCCEEE
Confidence 776666665443 33 7899999999999988432 2344443334555554 45788877665 4678999
Q ss_pred EEEcCC
Q 001042 1114 LFHRPQ 1119 (1178)
Q Consensus 1114 iwd~~~ 1119 (1178)
+||..+
T Consensus 534 iwd~~~ 539 (792)
T KOG1963|consen 534 IWDYDT 539 (792)
T ss_pred EecCCC
Confidence 999875
No 197
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.61 E-value=6.2e-14 Score=165.82 Aligned_cols=259 Identities=14% Similarity=0.195 Sum_probs=194.2
Q ss_pred eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCC
Q 001042 790 VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPS 869 (1178)
Q Consensus 790 I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~ 869 (1178)
+.+|++..... +-..+ .-...|+|++|+| -+..++|.|+.+|.|.+||+.
T Consensus 224 ~~vW~~~~p~~------------------Pe~~~-~~~s~v~~~~f~p-----------~~p~ll~gG~y~GqV~lWD~~ 273 (555)
T KOG1587|consen 224 LLVWSLKNPNT------------------PELVL-ESPSEVTCLKFCP-----------FDPNLLAGGCYNGQVVLWDLR 273 (555)
T ss_pred EEEEecCCCCC------------------ceEEE-ecCCceeEEEecc-----------CCcceEEeeccCceEEEEEcc
Confidence 77999886531 22222 3467899999996 678899999999999999987
Q ss_pred CCCceee----EeecccccceEEE----ecCCCEEEEEeCCCcEEEEECCCCcEE------EEec------CCCCceEEE
Q 001042 870 LRGSELR----ATLKGHTRTVRAI----NSDRGKVVSGSDDQSVLVWDKQTSQLL------EELK------GHDAQVSCV 929 (1178)
Q Consensus 870 ~~~~~~~----~~l~~h~~~V~~~----s~d~~~l~sgs~dg~I~iwd~~t~~~~------~~l~------~h~~~V~~l 929 (1178)
....... .....|..+++++ +..+.-+++++.||.|..|+++.-... .... .....++++
T Consensus 274 ~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~ 353 (555)
T KOG1587|consen 274 KGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSL 353 (555)
T ss_pred CCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeE
Confidence 4444212 2334678888865 444567999999999999987643221 1111 123467888
Q ss_pred EEe--CCCeEEEEeCCCeEEEEeCCC---Ce-----EEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC-CCce
Q 001042 930 RML--SGERVLTASHDGTVKMWDVRT---DT-----CVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIR-AGRQ 998 (1178)
Q Consensus 930 ~~~--~~~~l~sgs~dg~V~iwd~~~---~~-----~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~-~~~~ 998 (1178)
.|. +...+++|+.+|.|..-+-.. +. ....+..|.+.|.++.++|-+..++..+.|.++++|... ...+
T Consensus 354 ~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~P 433 (555)
T KOG1587|consen 354 KFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASP 433 (555)
T ss_pred eeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCc
Confidence 887 677899999999987733322 21 133455688999999999977666666669999999988 6777
Q ss_pred EEEEecCCccEEEEEEcCC---EEEEEeCCCcEEEEEcCCC--eeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEE
Q 001042 999 MHKFLGHTKWIRSIRMDRD---TVITGSDDWTARMWSISRG--TCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFW 1073 (1178)
Q Consensus 999 ~~~~~~~~~~v~~l~~~~~---~l~sgs~dg~I~iwd~~~~--~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iw 1073 (1178)
+..+..+...+++++|++. .++++..||.+.+||+... .++.+...+....+.+.|+++|+.|++|...|++.+|
T Consensus 434 l~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~ 513 (555)
T KOG1587|consen 434 LLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHIL 513 (555)
T ss_pred chhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEE
Confidence 8888888888999999765 7999999999999999754 3444554456677888999999999999999999999
Q ss_pred ECCCC
Q 001042 1074 ENDDG 1078 (1178)
Q Consensus 1074 d~~~~ 1078 (1178)
++...
T Consensus 514 ~l~~~ 518 (555)
T KOG1587|consen 514 KLSES 518 (555)
T ss_pred EcCch
Confidence 99754
No 198
>PF03456 uDENN: uDENN domain; InterPro: IPR005113 This region is always found associated with IPR001194 from INTERPRO. It is predicted to form an all beta domain [].; PDB: 3TW8_A.
Probab=99.61 E-value=4.2e-17 Score=138.16 Aligned_cols=65 Identities=32% Similarity=0.722 Sum_probs=46.1
Q ss_pred ccccccccccCCCCCCCCCCCCCCcccCCCceEEeecCCCCCCCCCCCceeEEEEEcCCCCeEEEEEEEec
Q 001042 34 LSSVLDQFPPLNHSLYTPPPPQLSTCVLPAGVQFYSSGFDSDDPSTFPRTYPIVLTEGDGSKIYVSCISFR 104 (1178)
Q Consensus 34 ~p~vl~~yP~~~~~~~~~~~~~v~~fc~P~g~~~~~~~~~~~~~~~~p~~f~fvlT~~~g~~~Yg~cl~f~ 104 (1178)
+|+|++|||+.|+...+..+++|++||||+|+.+..+. ...|++|+|||||++|+|+||+|++||
T Consensus 1 ~p~il~~yP~~d~~~~~~~~~~i~~FCfP~G~~~~~~~------~~~~~~f~FvLT~~~G~r~Yg~Cl~f~ 65 (65)
T PF03456_consen 1 KPEILDRYPPSDHEPDPPLPPSIPMFCFPDGIEISSQS------RPPPQFFSFVLTDEDGSRLYGYCLRFY 65 (65)
T ss_dssp --EEEEEEST--T---HHHHHHHHHHHS-S-CCCCGGG-------GSSCEEEEEEE-TTS-EEEEEEEE--
T ss_pred CCEEEEECCCCccccCCCChhhCCccCCCCCcEeeccc------cCCCeEEEEEEECCCCCEEEEEEEECC
Confidence 58999999999984344688999999999999886643 467899999999999999999999996
No 199
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.61 E-value=2.7e-14 Score=153.12 Aligned_cols=203 Identities=19% Similarity=0.318 Sum_probs=165.8
Q ss_pred EecCCCCceEEEEEe--CCCeEEEEeCCCeEEEEeCCCC-------eEEEEecCCCCCEEEEEEeCC-CCEEEEEeCCCe
Q 001042 918 ELKGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTD-------TCVATVGRCSSAVLCMEYDDS-TGILAAGGRDAV 987 (1178)
Q Consensus 918 ~l~~h~~~V~~l~~~--~~~~l~sgs~dg~V~iwd~~~~-------~~~~~~~~~~~~I~~l~~sp~-~~~l~sgs~dg~ 987 (1178)
.+.+|.++|..++|+ ++..+++||.|.+|.+|.+..+ +.+..+.+|...|-.++|+|. .+.|++++.|..
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 456899999999999 7889999999999999998654 456778899999999999994 567889999999
Q ss_pred EEEEECCCCceEEEEecCCccEEEEEE--cCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCc-EEEEEEecCCCEEEEE
Q 001042 988 ANIWDIRAGRQMHKFLGHTKWIRSIRM--DRDTVITGSDDWTARMWSISRGTCDAVLACHAGP-VQCVEYSSSDRGIITG 1064 (1178)
Q Consensus 988 I~lwD~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~-I~~l~~spdg~~L~sg 1064 (1178)
|.+||+.+|+.+.++. |.+.|.+++| +|.++++++.|..|||||.++++.+..-.+|.+. -..+.|-.+|..+-||
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG 234 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG 234 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence 9999999999988886 9999999999 6779999999999999999999999988888763 4566788888855444
Q ss_pred e---CCCcEEEEECCCCc-eEEEEEecccCCcEEEE-ecCCCEEEE-EeCCCcEEEEEcCCCc
Q 001042 1065 S---SDGLLRFWENDDGG-IKCVKNVTIHSSAILSI-NAGDHWLGI-GAADNSMSLFHRPQER 1121 (1178)
Q Consensus 1065 s---~Dg~I~iwd~~~~~-~~~~~~~~~h~~~i~~i-s~dg~~Las-gs~Dg~I~iwd~~~~~ 1121 (1178)
. ++..+-+||..+-+ ......+...++-.+-+ .+|.+.+.. |-.|+.|+-|.+.+..
T Consensus 235 fsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 235 FSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred cccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 3 57789999977642 23444555555555555 677776654 5579999999987654
No 200
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.59 E-value=9.8e-14 Score=164.12 Aligned_cols=261 Identities=13% Similarity=0.184 Sum_probs=190.1
Q ss_pred CcEEEEECCCCcEEEEecCCCCceEEEEEe--CCCeEEEEeCCCeEEEEeCCCCeE--EEE----ecCCCCCEEEEEEeC
Q 001042 903 QSVLVWDKQTSQLLEELKGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTDTC--VAT----VGRCSSAVLCMEYDD 974 (1178)
Q Consensus 903 g~I~iwd~~t~~~~~~l~~h~~~V~~l~~~--~~~~l~sgs~dg~V~iwd~~~~~~--~~~----~~~~~~~I~~l~~sp 974 (1178)
+.+.+|++.........-.-...|+++.|+ +.+.++.|+.+|.|.+||++.+.. ... ...|..+++.+.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 378999998763333333357889999999 788999999999999999987754 222 235788999999977
Q ss_pred CCC--EEEEEeCCCeEEEEECCCCce-EE-----EEe------cCCccEEEEEE---cCCEEEEEeCCCcEEEEEcCC--
Q 001042 975 STG--ILAAGGRDAVANIWDIRAGRQ-MH-----KFL------GHTKWIRSIRM---DRDTVITGSDDWTARMWSISR-- 1035 (1178)
Q Consensus 975 ~~~--~l~sgs~dg~I~lwD~~~~~~-~~-----~~~------~~~~~v~~l~~---~~~~l~sgs~dg~I~iwd~~~-- 1035 (1178)
+.. -+++++.||.|..|+++.-.. .. ... .....+++++| +++.++.|+++|.|.--+-..
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~ 381 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT 381 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence 544 499999999999999875432 11 111 12236778888 677999999999998733222
Q ss_pred -Ce-----eeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE--ecC-CCEEEEE
Q 001042 1036 -GT-----CDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI--NAG-DHWLGIG 1106 (1178)
Q Consensus 1036 -~~-----~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~d-g~~Lasg 1106 (1178)
+. ....+..|.++|+++.++|-+..++..+.|.+|++|.-... ...+..+..+...++++ ||. ...++++
T Consensus 382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~-~~Pl~~~~~~~~~v~~vaWSptrpavF~~~ 460 (555)
T KOG1587|consen 382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVI-ASPLLSLDSSPDYVTDVAWSPTRPAVFATV 460 (555)
T ss_pred ccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCC-CCcchhhhhccceeeeeEEcCcCceEEEEE
Confidence 21 23355678999999999998776665555999999987622 14556666677777665 654 4678888
Q ss_pred eCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001042 1107 AADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATIN 1177 (1178)
Q Consensus 1107 s~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~tg 1177 (1178)
..||.+.+||+..... ....+..-+....+.+.|+++|+.|+.|+..|++.+|++..+
T Consensus 461 d~~G~l~iWDLl~~~~-------------~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 461 DGDGNLDIWDLLQDDE-------------EPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred cCCCceehhhhhcccc-------------CCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 8999999999974321 222222233566788899999999999999999999999643
No 201
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.59 E-value=8.7e-13 Score=152.38 Aligned_cols=264 Identities=13% Similarity=0.190 Sum_probs=173.4
Q ss_pred EEEEeCCCcEEEEECCC-Cc--EEEEecCCCCceEEEEEe-CCCeEEEEe-CCCeEEEEeCC-CCeE--EEEecCCCCCE
Q 001042 896 VVSGSDDQSVLVWDKQT-SQ--LLEELKGHDAQVSCVRML-SGERVLTAS-HDGTVKMWDVR-TDTC--VATVGRCSSAV 967 (1178)
Q Consensus 896 l~sgs~dg~I~iwd~~t-~~--~~~~l~~h~~~V~~l~~~-~~~~l~sgs-~dg~V~iwd~~-~~~~--~~~~~~~~~~I 967 (1178)
.++...++.|.+||+.+ ++ .+..+. +.+....++++ +++.+++++ .++.|.+|++. +++. +.... .....
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p 82 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSP 82 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCc
Confidence 34446789999999964 43 445554 34567778888 667776654 58899999986 3432 22222 23456
Q ss_pred EEEEEeCCCCEEEEEeC-CCeEEEEECCCCc----eEEEEecCCccEEEEEEcC--CEE-EEEeCCCcEEEEEcCCCeee
Q 001042 968 LCMEYDDSTGILAAGGR-DAVANIWDIRAGR----QMHKFLGHTKWIRSIRMDR--DTV-ITGSDDWTARMWSISRGTCD 1039 (1178)
Q Consensus 968 ~~l~~sp~~~~l~sgs~-dg~I~lwD~~~~~----~~~~~~~~~~~v~~l~~~~--~~l-~sgs~dg~I~iwd~~~~~~~ 1039 (1178)
..++++|+++++++++. ++.|.+||+.+.. .+..+. +.....++++++ +++ ++...++.|.+||+.+...+
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l 161 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHL 161 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcc
Confidence 78999999998888764 8899999997432 222222 223455666654 466 45556799999999763322
Q ss_pred e-------EeccCCCcEEEEEEecCCCEEEEEeC-CCcEEEEECCC--CceEEEEEecccCC------c--EEEEecCCC
Q 001042 1040 A-------VLACHAGPVQCVEYSSSDRGIITGSS-DGLLRFWENDD--GGIKCVKNVTIHSS------A--ILSINAGDH 1101 (1178)
Q Consensus 1040 ~-------~~~~h~~~I~~l~~spdg~~L~sgs~-Dg~I~iwd~~~--~~~~~~~~~~~h~~------~--i~~is~dg~ 1101 (1178)
. ... .......++|+|+|++++++.. +++|.+|+++. +....+..+..+.. . -..++|+|+
T Consensus 162 ~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~ 240 (330)
T PRK11028 162 VAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGR 240 (330)
T ss_pred cccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCC
Confidence 1 111 1234678999999999988775 89999999973 44444444432211 1 245689999
Q ss_pred EEEEEeC-CCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeC-CCcEEEEECC
Q 001042 1102 WLGIGAA-DNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGR-NGLLRLWEAT 1175 (1178)
Q Consensus 1102 ~Lasgs~-Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~-Dg~V~IWdv~ 1175 (1178)
+++++.. ++.|.+|++... +... +....... ......++++|||++|++++. +++|.+|+++
T Consensus 241 ~lyv~~~~~~~I~v~~i~~~--------~~~~---~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 241 HLYACDRTASLISVFSVSED--------GSVL---SFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEEEecCCCCeEEEEEEeCC--------CCeE---EEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 9998854 789999998632 1111 22221111 123456899999999998875 8999999874
No 202
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=8.7e-15 Score=160.85 Aligned_cols=288 Identities=19% Similarity=0.297 Sum_probs=218.6
Q ss_pred eeeEeecccccceEEE--ecCCCEEEEEeCCCcEEEEECCCCcEEEEe-cCCCCceEEEEEe---CCCeEEEEeCCCeEE
Q 001042 874 ELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQLLEEL-KGHDAQVSCVRML---SGERVLTASHDGTVK 947 (1178)
Q Consensus 874 ~~~~~l~~h~~~V~~~--s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l-~~h~~~V~~l~~~---~~~~l~sgs~dg~V~ 947 (1178)
.+...+.+|.+.|..+ +..|..+++|+.|..|.+||+.+++....+ .+|...|....|. +...+++++.||.|+
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 3456788999999865 678999999999999999999998877666 4788888776665 577899999999999
Q ss_pred EEeCCC-CeE--EEEecCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCceEEEEe---cCCc---cEEEEEEcC-
Q 001042 948 MWDVRT-DTC--VATVGRCSSAVLCMEYDDST-GILAAGGRDAVANIWDIRAGRQMHKFL---GHTK---WIRSIRMDR- 1016 (1178)
Q Consensus 948 iwd~~~-~~~--~~~~~~~~~~I~~l~~sp~~-~~l~sgs~dg~I~lwD~~~~~~~~~~~---~~~~---~v~~l~~~~- 1016 (1178)
+=.+.. +.+ ...+..|.+.|.-++..|+. ..+.+++.|+.+.-+|++++.+...+. .+.. ...+++.++
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR 292 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence 877643 333 33456788999999999854 468899999999999999876544332 2333 456777754
Q ss_pred --CEEEEEeCCCcEEEEEcCCCee------eeEec------cCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCce--
Q 001042 1017 --DTVITGSDDWTARMWSISRGTC------DAVLA------CHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGI-- 1080 (1178)
Q Consensus 1017 --~~l~sgs~dg~I~iwd~~~~~~------~~~~~------~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~-- 1080 (1178)
+.+++|+.|..+++||.+.-.. +..+. ...-.|++++|+.++.-++++-.|-.|+++.-.-+.-
T Consensus 293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~ 372 (559)
T KOG1334|consen 293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSE 372 (559)
T ss_pred CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCC
Confidence 4899999999999999865221 12222 1234699999998887777777888899996543321
Q ss_pred --------EEEEE-ecccCCc--EEEE---ecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcc
Q 001042 1081 --------KCVKN-VTIHSSA--ILSI---NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVA 1146 (1178)
Q Consensus 1081 --------~~~~~-~~~h~~~--i~~i---s~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~ 1146 (1178)
..++. +++|.+. |..+ -|...++++||.-|.|.||+-.++ +.++.+.+...
T Consensus 373 p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~---------------eii~~MegDr~ 437 (559)
T KOG1334|consen 373 PDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG---------------EIIRFMEGDRH 437 (559)
T ss_pred CCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh---------------HHHHHhhcccc
Confidence 22333 6788654 4444 477899999999999999998744 45555666666
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001042 1147 VVRCIASDLERKRICSGGRNGLLRLWEATI 1176 (1178)
Q Consensus 1147 ~V~~lafspdg~~Las~s~Dg~V~IWdv~t 1176 (1178)
.|+|+.-+|--..|||+|-|.-|+||-..+
T Consensus 438 VVNCLEpHP~~PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 438 VVNCLEPHPHLPVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred eEeccCCCCCCchhhccCCccceeeecCCc
Confidence 899999999999999999999999998743
No 203
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.59 E-value=1.5e-12 Score=139.55 Aligned_cols=226 Identities=14% Similarity=0.155 Sum_probs=170.5
Q ss_pred ccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEEeCC--CcEEEEECCCCcEEEEecCCCC
Q 001042 847 DREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDD--QSVLVWDKQTSQLLEELKGHDA 924 (1178)
Q Consensus 847 ~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sgs~d--g~I~iwd~~t~~~~~~l~~h~~ 924 (1178)
|+.|...|..|+.|| .++++.+..+. . .........|...-....++|..+.+ +.+++++.+.+..+..+. ...
T Consensus 13 ~Nqd~~~lsvGs~~G-yk~~~~~~~~k-~-~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt 88 (391)
T KOG2110|consen 13 FNQDSTLLSVGSKDG-YKIFSCSPFEK-C-FSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIF-FPT 88 (391)
T ss_pred eccceeEEEccCCCc-eeEEecCchHH-h-hcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEEEe-cCC
Confidence 348899999999998 78888652222 1 11111122333333445566655544 458999998888777765 456
Q ss_pred ceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCC---CCCEEEEEEeCCCCEEEEEe--CCCeEEEEECCCCceE
Q 001042 925 QVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRC---SSAVLCMEYDDSTGILAAGG--RDAVANIWDIRAGRQM 999 (1178)
Q Consensus 925 ~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~---~~~I~~l~~sp~~~~l~sgs--~dg~I~lwD~~~~~~~ 999 (1178)
.|.++.++.. +++++-.+. |.|||+++.+.++++... ...+.+++.+..+.+++.-+ ..|.|.+||..+-+.+
T Consensus 89 ~IL~VrmNr~-RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v 166 (391)
T KOG2110|consen 89 SILAVRMNRK-RLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPV 166 (391)
T ss_pred ceEEEEEccc-eEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceee
Confidence 7888887644 455554443 999999999999887653 34466666666777887643 4689999999999999
Q ss_pred EEEecCCccEEEEEE--cCCEEEEEeCCCc-EEEEEcCCCeeeeEeccC--CCcEEEEEEecCCCEEEEEeCCCcEEEEE
Q 001042 1000 HKFLGHTKWIRSIRM--DRDTVITGSDDWT-ARMWSISRGTCDAVLACH--AGPVQCVEYSSSDRGIITGSSDGLLRFWE 1074 (1178)
Q Consensus 1000 ~~~~~~~~~v~~l~~--~~~~l~sgs~dg~-I~iwd~~~~~~~~~~~~h--~~~I~~l~~spdg~~L~sgs~Dg~I~iwd 1074 (1178)
..+..|.+.+.+++| +|.++|++|+.|+ ||++.+.+|+.+..+... ...|.+++|+|++++|++.|..++|.+|.
T Consensus 167 ~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 167 NTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFK 246 (391)
T ss_pred eEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEE
Confidence 999999999999999 5669999999998 799999999999998743 34688999999999999999999999999
Q ss_pred CCCC
Q 001042 1075 NDDG 1078 (1178)
Q Consensus 1075 ~~~~ 1078 (1178)
++..
T Consensus 247 L~~~ 250 (391)
T KOG2110|consen 247 LEKV 250 (391)
T ss_pred eccc
Confidence 8865
No 204
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=8.8e-15 Score=160.81 Aligned_cols=286 Identities=14% Similarity=0.191 Sum_probs=220.8
Q ss_pred cccCCcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccce
Q 001042 764 ASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREV 841 (1178)
Q Consensus 764 ~~gh~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~ 841 (1178)
+.+|++.|..+.|...|..+++|++| |.+||+..+.. .+.-..||...|..-.|.|.
T Consensus 138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~------------------~l~f~SGH~~NvfQaKFiP~--- 196 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSP------------------KLSFESGHCNNVFQAKFIPF--- 196 (559)
T ss_pred ccCCCCccceeeecccCceeeccCccceEEeehhhccCc------------------ccccccccccchhhhhccCC---
Confidence 56788899999999999999999999 99999998773 44556789999998888863
Q ss_pred eccccccCCCCEEEEEeCCCcEEEEcCCCCCcee-eEeecccccceEEE--ecC-CCEEEEEeCCCcEEEEECCCCcEEE
Q 001042 842 WDLVGDREDAGFFISGSTDCLVKIWDPSLRGSEL-RATLKGHTRTVRAI--NSD-RGKVVSGSDDQSVLVWDKQTSQLLE 917 (1178)
Q Consensus 842 ~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~-~~~l~~h~~~V~~~--s~d-~~~l~sgs~dg~I~iwd~~t~~~~~ 917 (1178)
.+...+++++.||.|++=.+...+... ...+..|.+.|..+ -|+ ...+.+++.|+.+.-.|+.++....
T Consensus 197 -------s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~ 269 (559)
T KOG1334|consen 197 -------SGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAE 269 (559)
T ss_pred -------CCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccc
Confidence 456789999999999998766433333 46677788888854 444 4568999999999999998875543
Q ss_pred Ee---cCCCC---ceEEEEEe--CCCeEEEEeCCCeEEEEeCCCCeE------EEEe------cCCCCCEEEEEEeCCCC
Q 001042 918 EL---KGHDA---QVSCVRML--SGERVLTASHDGTVKMWDVRTDTC------VATV------GRCSSAVLCMEYDDSTG 977 (1178)
Q Consensus 918 ~l---~~h~~---~V~~l~~~--~~~~l~sgs~dg~V~iwd~~~~~~------~~~~------~~~~~~I~~l~~sp~~~ 977 (1178)
.+ ..+.. ....++.. +...+++|+.|-.+++||.+.-.. +..+ ......|++++|+.++.
T Consensus 270 ~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~s 349 (559)
T KOG1334|consen 270 KFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGS 349 (559)
T ss_pred eeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCcc
Confidence 33 22333 34566665 456799999999999999865321 1222 12345699999998888
Q ss_pred EEEEEeCCCeEEEEECCC--C----------ceEEE-EecCCc--cEEEEEEc---CCEEEEEeCCCcEEEEEcCCCeee
Q 001042 978 ILAAGGRDAVANIWDIRA--G----------RQMHK-FLGHTK--WIRSIRMD---RDTVITGSDDWTARMWSISRGTCD 1039 (1178)
Q Consensus 978 ~l~sgs~dg~I~lwD~~~--~----------~~~~~-~~~~~~--~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~ 1039 (1178)
-+++...|-.|+++.-.. | ..++. +++|.+ .|..+-|- .+++++||.-|.|.||+-.+++.+
T Consensus 350 ElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii 429 (559)
T KOG1334|consen 350 ELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEII 429 (559)
T ss_pred ceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHH
Confidence 888888888999995432 2 12233 677765 57777773 359999999999999999999999
Q ss_pred eEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 001042 1040 AVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDD 1077 (1178)
Q Consensus 1040 ~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~ 1077 (1178)
..+.+...-|+|+.-+|--..||++|-|..|+||...+
T Consensus 430 ~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 430 RFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred HHhhcccceEeccCCCCCCchhhccCCccceeeecCCc
Confidence 99998777999999999999999999999999998644
No 205
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.58 E-value=1e-13 Score=143.15 Aligned_cols=244 Identities=20% Similarity=0.320 Sum_probs=182.0
Q ss_pred eEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCC-------CcEEEEcCCCCCc-------eeeEeec-cccc
Q 001042 820 IRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTD-------CLVKIWDPSLRGS-------ELRATLK-GHTR 884 (1178)
Q Consensus 820 ~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~D-------g~I~iWd~~~~~~-------~~~~~l~-~h~~ 884 (1178)
-++|..|.+.|+.++-+| .|.+.|+|+..+ -.+-||.+...-. +.+..+. .+-+
T Consensus 56 skvf~h~agEvw~las~P-----------~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg 124 (370)
T KOG1007|consen 56 SKVFFHHAGEVWDLASSP-----------FDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVG 124 (370)
T ss_pred hhhhhcCCcceehhhcCC-----------CCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhC
Confidence 346777888898888876 677788877552 2467998762211 2223333 3445
Q ss_pred ceEE--EecCCCEEEEEeCCCcEEEEECCCCcE-EEEec-----CCCCceEEEEEe---CCCeEEEEeCCCeEEEEeCCC
Q 001042 885 TVRA--INSDRGKVVSGSDDQSVLVWDKQTSQL-LEELK-----GHDAQVSCVRML---SGERVLTASHDGTVKMWDVRT 953 (1178)
Q Consensus 885 ~V~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~-~~~l~-----~h~~~V~~l~~~---~~~~l~sgs~dg~V~iwd~~~ 953 (1178)
.|.| |.|++..+++-. |..|.+|+++.+.. +..+. ++....++-+|+ +++.++ ...|+++..||+++
T Consensus 125 ~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~-tt~d~tl~~~D~RT 202 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVA-TTSDSTLQFWDLRT 202 (370)
T ss_pred ceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEE-EeCCCcEEEEEccc
Confidence 5665 489999998877 78899999988765 33332 345667778887 355554 45689999999999
Q ss_pred CeEEEEec-CCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCC-ceEEEEecCCccEEEEEEcCC---EEEEEeCCCc
Q 001042 954 DTCVATVG-RCSSAVLCMEYDDSTG-ILAAGGRDAVANIWDIRAG-RQMHKFLGHTKWIRSIRMDRD---TVITGSDDWT 1027 (1178)
Q Consensus 954 ~~~~~~~~-~~~~~I~~l~~sp~~~-~l~sgs~dg~I~lwD~~~~-~~~~~~~~~~~~v~~l~~~~~---~l~sgs~dg~ 1027 (1178)
.++...+. .|...|..+.|+|+.+ +|++++.||.|++||.+.. .++.++.+|..+|.++.|++. .+++|+.|..
T Consensus 203 ~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~ 282 (370)
T KOG1007|consen 203 MKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSA 282 (370)
T ss_pred hhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCce
Confidence 88776664 5778899999999765 5788999999999999864 578899999999999999654 8999999999
Q ss_pred EEEEEcCCC-----------------------------eeeeEeccCCCcEEEEEEecCCCE-EEEEeCCCcEEEEECC
Q 001042 1028 ARMWSISRG-----------------------------TCDAVLACHAGPVQCVEYSSSDRG-IITGSSDGLLRFWEND 1076 (1178)
Q Consensus 1028 I~iwd~~~~-----------------------------~~~~~~~~h~~~I~~l~~spdg~~-L~sgs~Dg~I~iwd~~ 1076 (1178)
|.+|...+- ..+.++..|.+.|.+++||.-..+ +|+-+.||.+.|=.+.
T Consensus 283 V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 283 VNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred eEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 999965321 123456679999999999987665 6778899999876654
No 206
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.58 E-value=5.4e-14 Score=155.59 Aligned_cols=207 Identities=16% Similarity=0.309 Sum_probs=162.7
Q ss_pred CCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEE--EecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceE
Q 001042 850 DAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVS 927 (1178)
Q Consensus 850 d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~ 927 (1178)
....++.++.||.+.|-+ ...........|.+.+.+ |++||.-|++++.||.|++|. ++|-...++.....+|.
T Consensus 74 ~~d~~~i~s~DGkf~il~---k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~ 149 (737)
T KOG1524|consen 74 GSDTLLICSNDGRFVILN---KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIR 149 (737)
T ss_pred CcceEEEEcCCceEEEec---ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeE
Confidence 345788888999999987 345666788899999985 799999999999999999998 45655556666788999
Q ss_pred EEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCc
Q 001042 928 CVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTK 1007 (1178)
Q Consensus 928 ~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~ 1007 (1178)
|++|.++..=+.-+..+.+.+=-+.....+...+.|++-|.++.|++..+.+++|+.|-..++||. .|..+..-..|.-
T Consensus 150 c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey 228 (737)
T KOG1524|consen 150 CARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEY 228 (737)
T ss_pred EEEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhcc
Confidence 999984332222334456677667666667778899999999999999999999999999999995 4667777778999
Q ss_pred cEEEEEEcCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEE
Q 001042 1008 WIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRF 1072 (1178)
Q Consensus 1008 ~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~i 1072 (1178)
+|++++|+++.+...+.-.+.|+ -+...+.|..++||+||..+++|+..|.+.+
T Consensus 229 ~ITSva~npd~~~~v~S~nt~R~-----------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 229 AITSVAFNPEKDYLLWSYNTARF-----------SSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred ceeeeeeccccceeeeeeeeeee-----------cCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 99999998874443333334441 1224678999999999999999999988754
No 207
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.57 E-value=8.1e-14 Score=154.20 Aligned_cols=255 Identities=17% Similarity=0.247 Sum_probs=182.6
Q ss_pred cccceEEEe-cCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe---------CCCeEEEEeCCCeEEEEeC
Q 001042 882 HTRTVRAIN-SDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML---------SGERVLTASHDGTVKMWDV 951 (1178)
Q Consensus 882 h~~~V~~~s-~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~---------~~~~l~sgs~dg~V~iwd~ 951 (1178)
|...+.++. .....++.++.|..+.+|.-.+......+.-....+....+. ..+.++.++.||.+.+.+
T Consensus 13 ~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~- 91 (737)
T KOG1524|consen 13 NSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN- 91 (737)
T ss_pred cceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec-
Confidence 444444442 223345555566666666544433333222222222211111 245699999999999987
Q ss_pred CCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEcCC---EEEEEeCCCcE
Q 001042 952 RTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD---TVITGSDDWTA 1028 (1178)
Q Consensus 952 ~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~---~l~sgs~dg~I 1028 (1178)
+.++....+..|.+.+.+-.|+|||.-|++++.||.|++|. ++|-...++.....+|.|++|.++ .+.+. .+.+
T Consensus 92 k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~--g~h~ 168 (737)
T KOG1524|consen 92 KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ--GGHI 168 (737)
T ss_pred ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEec--CCeE
Confidence 46777788889999999999999999999999999999998 556555556667789999999665 34333 4567
Q ss_pred EEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEEe--cCCCEEEEE
Q 001042 1029 RMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSIN--AGDHWLGIG 1106 (1178)
Q Consensus 1029 ~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is--~dg~~Lasg 1106 (1178)
.|=.+.....+-.+++|.+-|.++.|++..+.+++||.|-..++||... ..+.+-..|..+|++++ |+ ..++.|
T Consensus 169 ~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G---~~Lf~S~~~ey~ITSva~npd-~~~~v~ 244 (737)
T KOG1524|consen 169 SIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG---ANLFTSAAEEYAITSVAFNPE-KDYLLW 244 (737)
T ss_pred EEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC---cccccCChhccceeeeeeccc-cceeee
Confidence 7767777777788999999999999999999999999999999999765 45666677888998885 55 444444
Q ss_pred eCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEE
Q 001042 1107 AADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRL 1171 (1178)
Q Consensus 1107 s~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~I 1171 (1178)
|. ++.++=. ...+.|..++||+||..++.|...|.+.+
T Consensus 245 S~-nt~R~~~--------------------------p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 245 SY-NTARFSS--------------------------PRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred ee-eeeeecC--------------------------CCccceEEEEEcCCCceeeccccCceEEE
Confidence 43 3444211 23456999999999999999999887754
No 208
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=1.4e-13 Score=152.68 Aligned_cols=210 Identities=15% Similarity=0.227 Sum_probs=153.9
Q ss_pred CCcccccCCcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceE-EecccccceEEEEee
Q 001042 760 QPAEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIR-IIRGHAGAITALHCV 836 (1178)
Q Consensus 760 ~~~~~~gh~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~gH~~~V~~l~fs 836 (1178)
+...+.||.+-|.|++|+.||.+||||++| +.|||.-..+ .++ +-.||.+.|.++.|.
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~K-------------------llhsI~TgHtaNIFsvKFv 102 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYK-------------------LLHSISTGHTANIFSVKFV 102 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcc-------------------eeeeeecccccceeEEeee
Confidence 456678999999999999999999999999 9999987444 333 456999999999999
Q ss_pred eccceeccccccCCCCEEEEEeCCCcEEEEcCCCC--------CceeeEeecccccceEEE--ecCC-CEEEEEeCCCcE
Q 001042 837 TKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLR--------GSELRATLKGHTRTVRAI--NSDR-GKVVSGSDDQSV 905 (1178)
Q Consensus 837 ~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~--------~~~~~~~l~~h~~~V~~~--s~d~-~~l~sgs~dg~I 905 (1178)
|. .+.+.++||+.|..|+++|++.. -.+....+..|...|..+ .|++ +.+.+++.||+|
T Consensus 103 P~----------tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGti 172 (758)
T KOG1310|consen 103 PY----------TNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTI 172 (758)
T ss_pred cc----------CCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcce
Confidence 74 56788999999999999998721 123344566777777654 5666 789999999999
Q ss_pred EEEECCCCcEE-------E---EecCCCCceEEEEEe--CCCeEEEEeCCCeEEEEeCCC--------C----------e
Q 001042 906 LVWDKQTSQLL-------E---ELKGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRT--------D----------T 955 (1178)
Q Consensus 906 ~iwd~~t~~~~-------~---~l~~h~~~V~~l~~~--~~~~l~sgs~dg~V~iwd~~~--------~----------~ 955 (1178)
+-+|++..... . .+...--...|+..+ ...++++|+.|-..++||.+. + .
T Consensus 173 rQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~ 252 (758)
T KOG1310|consen 173 RQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCR 252 (758)
T ss_pred eeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccc
Confidence 99999753111 0 111111234567776 577899999999999999431 1 1
Q ss_pred EEEEec-CCC-----------CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce
Q 001042 956 CVATVG-RCS-----------SAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQ 998 (1178)
Q Consensus 956 ~~~~~~-~~~-----------~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~ 998 (1178)
++..+. +|- ..++-++|+|+|.-+++.-....|+++|+..++.
T Consensus 253 cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~ 307 (758)
T KOG1310|consen 253 CVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKS 307 (758)
T ss_pred hhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCC
Confidence 232221 111 1245678999999888887777899999976554
No 209
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.53 E-value=3.3e-13 Score=139.60 Aligned_cols=238 Identities=20% Similarity=0.311 Sum_probs=173.5
Q ss_pred cccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCc--eeeEee-----cccccceEEEe---cCC
Q 001042 824 RGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGS--ELRATL-----KGHTRTVRAIN---SDR 893 (1178)
Q Consensus 824 ~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~--~~~~~l-----~~h~~~V~~~s---~d~ 893 (1178)
-.|.-+++.+.|.|... + -..++|||.+. .+|+|.+..... ++...+ ..+..++++|. -+.
T Consensus 93 fd~~YP~tK~~wiPd~~-----g--~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp 163 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSK-----G--VYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDP 163 (364)
T ss_pred CCCCCCccceEecCCcc-----c--cCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCc
Confidence 36899999999996421 0 11246776653 699999873222 222222 23455677763 467
Q ss_pred CEEEEEeCCCcEEEEECCCCc---EEEEecCCCCceEEEEEeC--CCeEEEEeCCCeEEEEeCCCCeEEEEecC---CCC
Q 001042 894 GKVVSGSDDQSVLVWDKQTSQ---LLEELKGHDAQVSCVRMLS--GERVLTASHDGTVKMWDVRTDTCVATVGR---CSS 965 (1178)
Q Consensus 894 ~~l~sgs~dg~I~iwd~~t~~---~~~~l~~h~~~V~~l~~~~--~~~l~sgs~dg~V~iwd~~~~~~~~~~~~---~~~ 965 (1178)
+++.+++-|-+..|||++++. ....+-.|...|..++|.. -+.+++++.||.|+++|++..+.-..+.. ...
T Consensus 164 ~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~ 243 (364)
T KOG0290|consen 164 NLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPST 243 (364)
T ss_pred ceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCC
Confidence 899999999999999999873 3556778999999999994 56799999999999999987654333322 256
Q ss_pred CEEEEEEeC-CCCEEEEEe-CCCeEEEEECCCC-ceEEEEecCCccEEEEEEc---CCEEEEEeCCCcEEEEEcCCCe--
Q 001042 966 AVLCMEYDD-STGILAAGG-RDAVANIWDIRAG-RQMHKFLGHTKWIRSIRMD---RDTVITGSDDWTARMWSISRGT-- 1037 (1178)
Q Consensus 966 ~I~~l~~sp-~~~~l~sgs-~dg~I~lwD~~~~-~~~~~~~~~~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~-- 1037 (1178)
+...++|++ |-+++|+-. ....|.+.|++.. .++.++++|.+.|+.++|. +..+++++.|..+.+||+...-
T Consensus 244 pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~ 323 (364)
T KOG0290|consen 244 PLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRE 323 (364)
T ss_pred cceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccccccc
Confidence 788899988 456666644 3457999999974 5688899999999999994 4599999999999999997532
Q ss_pred ----eeeEeccCCCcEEEEEEec-CCCEEEEEeCCCcEEE
Q 001042 1038 ----CDAVLACHAGPVQCVEYSS-SDRGIITGSSDGLLRF 1072 (1178)
Q Consensus 1038 ----~~~~~~~h~~~I~~l~~sp-dg~~L~sgs~Dg~I~i 1072 (1178)
++..+. ..+.|+.+.|++ .+.+++.+. ++++.+
T Consensus 324 ~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 324 NGEDPILAYT-AGGEVNQIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred CCCCchhhhh-ccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence 222233 467899999995 466777765 344433
No 210
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=4e-13 Score=146.54 Aligned_cols=193 Identities=14% Similarity=0.236 Sum_probs=150.2
Q ss_pred EEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCeeeeEecc-
Q 001042 968 LCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMD--RDTVITGSDDWTARMWSISRGTCDAVLAC- 1044 (1178)
Q Consensus 968 ~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~- 1044 (1178)
.+++++.+|..+++|+.||++++|+..+...+.....|.+.|.++.|+ +..|++.+.| ..+||+.++|..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 789999999999999999999999988888888888999999999995 4589999999 999999999977666542
Q ss_pred -CCCcEEEEEEecCC---CE--EEEEeCCCcEEEEECCCCce----EEEEEeccc-CCcEEEEecCCCEEEEEeCCCcEE
Q 001042 1045 -HAGPVQCVEYSSSD---RG--IITGSSDGLLRFWENDDGGI----KCVKNVTIH-SSAILSINAGDHWLGIGAADNSMS 1113 (1178)
Q Consensus 1045 -h~~~I~~l~~spdg---~~--L~sgs~Dg~I~iwd~~~~~~----~~~~~~~~h-~~~i~~is~dg~~Lasgs~Dg~I~ 1113 (1178)
.......+.|+.|+ .+ .+.....+.|+.||+..... +..+....+ ....++++.+|+++|.|+.||.|.
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa 306 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA 306 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence 23346677888776 33 33333456677777654321 222222223 444566799999999999999999
Q ss_pred EEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001042 1114 LFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEAT 1175 (1178)
Q Consensus 1114 iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~ 1175 (1178)
|++..+.+ ......+.|...|+.+.|+||.+++++.+.|..+.|-.+.
T Consensus 307 i~~~~~lq--------------~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 307 IYDAKSLQ--------------RLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred EEEeceee--------------eeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 99987542 3445567899999999999999999999999988887664
No 211
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.53 E-value=3.1e-12 Score=137.16 Aligned_cols=233 Identities=9% Similarity=0.168 Sum_probs=170.9
Q ss_pred CceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCC--CeEEEEECCCCceEE
Q 001042 924 AQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRD--AVANIWDIRAGRQMH 1000 (1178)
Q Consensus 924 ~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~d--g~I~lwD~~~~~~~~ 1000 (1178)
..+..+.|+ +...+..|+.||. +++....-............|.-+-|+. .++|..+.+ ..+++++.+.+..+.
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~IC 82 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTIC 82 (391)
T ss_pred cceeeeeeccceeEEEccCCCce-eEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCceEE
Confidence 445666677 5555667777775 7777665433222222334455555654 445555543 459999998887777
Q ss_pred EEecCCccEEEEEEcCCEEEEEeCCCcEEEEEcCCCeeeeEecc---CCCcEEEEEEecCCCEEEEEe--CCCcEEEEEC
Q 001042 1001 KFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLAC---HAGPVQCVEYSSSDRGIITGS--SDGLLRFWEN 1075 (1178)
Q Consensus 1001 ~~~~~~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---h~~~I~~l~~spdg~~L~sgs--~Dg~I~iwd~ 1075 (1178)
.+ .....|.++.++.++|+++-.+. |+|||+++.+.+.++.. +...+.++.+++.+.+++.-+ ..|.|.+||+
T Consensus 83 e~-~fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~ 160 (391)
T KOG2110|consen 83 EI-FFPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDT 160 (391)
T ss_pred EE-ecCCceEEEEEccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEc
Confidence 66 45668999999999998887775 99999999999888763 445577777777777888644 5789999999
Q ss_pred CCCceEEEEEecccCCcEEEE--ecCCCEEEEEeCCCc-EEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEE
Q 001042 1076 DDGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNS-MSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIA 1152 (1178)
Q Consensus 1076 ~~~~~~~~~~~~~h~~~i~~i--s~dg~~Lasgs~Dg~-I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~la 1152 (1178)
.+- +.+..+..|.+.+.++ +++|.+||++|+.|+ |||+++++ |+++. +..+-.. ...|.+++
T Consensus 161 ~nl--~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~---------G~kl~--eFRRG~~--~~~IySL~ 225 (391)
T KOG2110|consen 161 INL--QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE---------GQKLY--EFRRGTY--PVSIYSLS 225 (391)
T ss_pred ccc--eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCC---------ccEee--eeeCCce--eeEEEEEE
Confidence 887 7778888999988665 899999999999998 69999984 43322 1111111 34689999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCC
Q 001042 1153 SDLERKRICSGGRNGLLRLWEATI 1176 (1178)
Q Consensus 1153 fspdg~~Las~s~Dg~V~IWdv~t 1176 (1178)
|+||+++|++.|..++|+|+++++
T Consensus 226 Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 226 FSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred ECCCCCeEEEecCCCeEEEEEecc
Confidence 999999999999999999999875
No 212
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.51 E-value=1.2e-12 Score=158.08 Aligned_cols=268 Identities=15% Similarity=0.135 Sum_probs=183.0
Q ss_pred EECCCCcEEEEecCCCCceEEEEEe--CCCeEEEEeCCCeEEEEeCCCC-------eEEEEecCCCCCEEEEEEeCCCCE
Q 001042 908 WDKQTSQLLEELKGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTD-------TCVATVGRCSSAVLCMEYDDSTGI 978 (1178)
Q Consensus 908 wd~~t~~~~~~l~~h~~~V~~l~~~--~~~~l~sgs~dg~V~iwd~~~~-------~~~~~~~~~~~~I~~l~~sp~~~~ 978 (1178)
|+.+ |..+..+..|...+..++.+ ++.++++||.||+|++||.+.- +...++....+.+.++...+.++.
T Consensus 1034 W~p~-G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCcc-ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 6654 78889999999999999988 3479999999999999998642 233444446788999999999999
Q ss_pred EEEEeCCCeEEEEECCCC--ce-----EEEEecC-CccEE-EEEE---cCC-EEEEEeCCCcEEEEEcCCCeeeeEec--
Q 001042 979 LAAGGRDAVANIWDIRAG--RQ-----MHKFLGH-TKWIR-SIRM---DRD-TVITGSDDWTARMWSISRGTCDAVLA-- 1043 (1178)
Q Consensus 979 l~sgs~dg~I~lwD~~~~--~~-----~~~~~~~-~~~v~-~l~~---~~~-~l~sgs~dg~I~iwd~~~~~~~~~~~-- 1043 (1178)
+|+++.||.|.+.++... +. .+....+ .+.+. .-++ ... .++.+...+.|..||+++.....+++
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 999999999999998752 11 1111111 22233 3333 233 78888899999999998876665554
Q ss_pred cCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE--e---cCCCEEEEEe--CCCcEEEEE
Q 001042 1044 CHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI--N---AGDHWLGIGA--ADNSMSLFH 1116 (1178)
Q Consensus 1044 ~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s---~dg~~Lasgs--~Dg~I~iwd 1116 (1178)
...+.|++++.+|.+.++++|+..|.+.+||++-+...+...... ..++..+ . +.....++++ ..+.|.+|+
T Consensus 1193 ~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~-~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn 1271 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPA-RAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWN 1271 (1431)
T ss_pred ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcc-cCCcceEEeeccCCCCceEEEecccCCCceeeee
Confidence 245789999999999999999999999999999774333333333 3555444 2 3345555544 478899999
Q ss_pred cCCCccccccC--CCCCccceeEeec--cCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001042 1117 RPQERLGGFSG--TGSKMSGWQLYRT--PQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATIN 1177 (1178)
Q Consensus 1117 ~~~~~~~~~~~--~g~~~~~~~~~~~--~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~tg 1177 (1178)
+.++.-....- ++...-.|..... .+.+.-.....++...+..+.+||.|+.||.||..+.
T Consensus 1272 ~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1272 METGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred cccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 98652211111 1211111211111 1122233344455566778999999999999998764
No 213
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.50 E-value=1.2e-12 Score=137.69 Aligned_cols=229 Identities=13% Similarity=0.120 Sum_probs=174.3
Q ss_pred cceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceecccc
Q 001042 769 RSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVG 846 (1178)
Q Consensus 769 ~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~ 846 (1178)
.+|.|.||++|++.+|.+-.. |.|+...+.+. ....++++.|...|++|+|+
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~----------------w~~~htls~Hd~~vtgvdWa---------- 64 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL----------------WEPAHTLSEHDKIVTGVDWA---------- 64 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCCC----------------ceeceehhhhCcceeEEeec----------
Confidence 689999999999999999877 99998886552 23688999999999999998
Q ss_pred ccCCCCEEEEEeCCCcEEEEcC-CCCCceeeEeecccccceEEE--ecCCCEEEEEeCCCcEEEEECCCCcEEE----Ee
Q 001042 847 DREDAGFFISGSTDCLVKIWDP-SLRGSELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQLLE----EL 919 (1178)
Q Consensus 847 ~s~d~~~Lasgs~Dg~I~iWd~-~~~~~~~~~~l~~h~~~V~~~--s~d~~~l~sgs~dg~I~iwd~~t~~~~~----~l 919 (1178)
|..+.|++++.|..-++|.. +....+....+..++..++++ +|.++.+++|+....|.||-++..+--. .-
T Consensus 65 --p~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhik 142 (361)
T KOG1523|consen 65 --PKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIK 142 (361)
T ss_pred --CCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhC
Confidence 78999999999999999997 433344555666788888865 8999999999999999999877543221 22
Q ss_pred cCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCC-----C-------------CeEEEEecCCCCCEEEEEEeCCCCEEE
Q 001042 920 KGHDAQVSCVRML-SGERVLTASHDGTVKMWDVR-----T-------------DTCVATVGRCSSAVLCMEYDDSTGILA 980 (1178)
Q Consensus 920 ~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~-----~-------------~~~~~~~~~~~~~I~~l~~sp~~~~l~ 980 (1178)
+.+...|++++|+ ++-.+++|+.|+..+++..- . |+.+..+....+.+..+.|+|+|..|+
T Consensus 143 kPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~la 222 (361)
T KOG1523|consen 143 KPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLA 222 (361)
T ss_pred CccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEee
Confidence 3467789999999 56678889999999998641 1 122333334567899999999999999
Q ss_pred EEeCCCeEEEEECCCCc-eEEEEecCCccEEEEEE-cCCEEEEEeCC
Q 001042 981 AGGRDAVANIWDIRAGR-QMHKFLGHTKWIRSIRM-DRDTVITGSDD 1025 (1178)
Q Consensus 981 sgs~dg~I~lwD~~~~~-~~~~~~~~~~~v~~l~~-~~~~l~sgs~d 1025 (1178)
-.+.|+.+.+-|..... .+.......-+..++.| +.+.++.++.|
T Consensus 223 wv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~vv~ag~~ 269 (361)
T KOG1523|consen 223 WVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISENSVVAAGYD 269 (361)
T ss_pred EecCCCceEEeecCCCchhccchhhccCCceeeEeecCCceeecCCC
Confidence 99999999999987664 33343333356666666 44444444444
No 214
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.49 E-value=1.7e-11 Score=141.63 Aligned_cols=266 Identities=11% Similarity=0.172 Sum_probs=166.6
Q ss_pred eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceeccccccCCCCEEEEEe-CCCcEEEEcC
Q 001042 790 VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGS-TDCLVKIWDP 868 (1178)
Q Consensus 790 I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs-~Dg~I~iWd~ 868 (1178)
|++|++++..... .++.+. +.+....++++ |++++|++++ .++.|.+|++
T Consensus 14 I~~~~~~~~g~l~----------------~~~~~~-~~~~~~~l~~s------------pd~~~lyv~~~~~~~i~~~~~ 64 (330)
T PRK11028 14 IHVWNLNHEGALT----------------LLQVVD-VPGQVQPMVIS------------PDKRHLYVGVRPEFRVLSYRI 64 (330)
T ss_pred EEEEEECCCCcee----------------eeeEEe-cCCCCccEEEC------------CCCCEEEEEECCCCcEEEEEE
Confidence 9999996422100 334443 23456677776 8999887664 5789999998
Q ss_pred CCCCc-eeeEeec-ccccceEEEecCCCEEEEEeC-CCcEEEEECCC-C---cEEEEecCCCCceEEEEEe-CCCeEEEE
Q 001042 869 SLRGS-ELRATLK-GHTRTVRAINSDRGKVVSGSD-DQSVLVWDKQT-S---QLLEELKGHDAQVSCVRML-SGERVLTA 940 (1178)
Q Consensus 869 ~~~~~-~~~~~l~-~h~~~V~~~s~d~~~l~sgs~-dg~I~iwd~~t-~---~~~~~l~~h~~~V~~l~~~-~~~~l~sg 940 (1178)
+..+. ....... +....-.+++++++++++++. ++.|.+|++++ + +.+..+. +.....+++++ +++.++++
T Consensus 65 ~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~ 143 (330)
T PRK11028 65 ADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVP 143 (330)
T ss_pred CCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEe
Confidence 62221 2222221 111122357899999888764 78999999974 3 2233332 23345667787 56666554
Q ss_pred -eCCCeEEEEeCCCCeEEEE-----ec-CCCCCEEEEEEeCCCCEEEEEeC-CCeEEEEECCC--Cc--eEEEEecC---
Q 001042 941 -SHDGTVKMWDVRTDTCVAT-----VG-RCSSAVLCMEYDDSTGILAAGGR-DAVANIWDIRA--GR--QMHKFLGH--- 1005 (1178)
Q Consensus 941 -s~dg~V~iwd~~~~~~~~~-----~~-~~~~~I~~l~~sp~~~~l~sgs~-dg~I~lwD~~~--~~--~~~~~~~~--- 1005 (1178)
..++.|.+||+.+...+.. .. ........++|+|+|++++++.. ++.|.+||+.. ++ .+..+...
T Consensus 144 ~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~ 223 (330)
T PRK11028 144 CLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPAD 223 (330)
T ss_pred eCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCc
Confidence 4569999999976432211 11 12344678999999999988876 89999999973 32 23333221
Q ss_pred ---CccEEEEEE--cCCEEEEEe-CCCcEEEEEcCCCeeeeEeccC---CCcEEEEEEecCCCEEEEEeC-CCcEEEEEC
Q 001042 1006 ---TKWIRSIRM--DRDTVITGS-DDWTARMWSISRGTCDAVLACH---AGPVQCVEYSSSDRGIITGSS-DGLLRFWEN 1075 (1178)
Q Consensus 1006 ---~~~v~~l~~--~~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~h---~~~I~~l~~spdg~~L~sgs~-Dg~I~iwd~ 1075 (1178)
......+.+ ++++++++. .++.|.+|++.......++.++ ......+.++|+|++|+++.. +++|.+|++
T Consensus 224 ~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~ 303 (330)
T PRK11028 224 FSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEI 303 (330)
T ss_pred CCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEE
Confidence 112334666 445777775 4789999998654322222222 124567899999999998775 899999987
Q ss_pred C--CCceEEEEE
Q 001042 1076 D--DGGIKCVKN 1085 (1178)
Q Consensus 1076 ~--~~~~~~~~~ 1085 (1178)
+ ++.+..+..
T Consensus 304 ~~~~g~l~~~~~ 315 (330)
T PRK11028 304 DGETGLLTELGR 315 (330)
T ss_pred cCCCCcEEEccc
Confidence 5 444333333
No 215
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.47 E-value=6.4e-13 Score=139.39 Aligned_cols=355 Identities=13% Similarity=0.133 Sum_probs=224.0
Q ss_pred cCCCCC-C----------CCCCCCCCcccccCCcceEEEEecCCCCcccccccc---eeecccccccCCCCCCCCCCCcC
Q 001042 747 PSPLSK-D----------ATNDDQQPAEASGIGRSWVQSMFSREASSRSHSFSR---VRKWTSDAANENGTPRKQDSTAG 812 (1178)
Q Consensus 747 fSP~g~-~----------~~~~~~~~~~~~gh~~~i~~~aFSpdg~~las~~~d---I~vWd~~~~~~~~~~~~~~~~~~ 812 (1178)
|||+|+ . .+.++-|.......-..|+.+.|+.|..++..+... |.+|++...+
T Consensus 16 fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe------------- 82 (447)
T KOG4497|consen 16 FSPCGNYIASLSRYRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE------------- 82 (447)
T ss_pred ECCCCCeeeeeeeeEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecce-------------
Confidence 899998 1 122444554444445678888999999887776654 9999988655
Q ss_pred CcccccceEEecccccceEEEEeeeccceeccccccCCCCEE-EEEeCCCcEEEEcCCCCCceeeEeecccccceEEEec
Q 001042 813 GKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFF-ISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINS 891 (1178)
Q Consensus 813 ~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~L-asgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~ 891 (1178)
-...+.....++.+++|| |||+.+ .+..-|-.|.+|.+.+..... .....|.....++++
T Consensus 83 ------w~ckIdeg~agls~~~WS------------PdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~ 143 (447)
T KOG4497|consen 83 ------WYCKIDEGQAGLSSISWS------------PDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHP 143 (447)
T ss_pred ------eEEEeccCCCcceeeeEC------------CCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECC
Confidence 344455667788999998 899655 455668899999987443333 334445567778999
Q ss_pred CCCEEEEEeCCCc---EEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCE
Q 001042 892 DRGKVVSGSDDQS---VLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAV 967 (1178)
Q Consensus 892 d~~~l~sgs~dg~---I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I 967 (1178)
||++.+.++.... +.|........++.+...+-..+.+.|+ +|+.+ .+||.--.-.+..+ ...-.+
T Consensus 144 dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~l---------aVwd~~Leykv~aY-e~~lG~ 213 (447)
T KOG4497|consen 144 DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWL---------AVWDNVLEYKVYAY-ERGLGL 213 (447)
T ss_pred CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEE---------EEecchhhheeeee-eeccce
Confidence 9999888876422 2222222334455666667778889998 45444 45653222222122 223568
Q ss_pred EEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCcc--------------------EEEEEEcCCEEEEEeCCCc
Q 001042 968 LCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKW--------------------IRSIRMDRDTVITGSDDWT 1027 (1178)
Q Consensus 968 ~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~--------------------v~~l~~~~~~l~sgs~dg~ 1027 (1178)
..++|+|.++++++|+.|+.+++.+--+.+...++ .|-.. ..+++|.+. |-.
T Consensus 214 k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~ef-lhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~-------~~~ 285 (447)
T KOG4497|consen 214 KFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEF-LHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPT-------DLE 285 (447)
T ss_pred eEEEeccccceEEeeccchhhhhhceeeeeehhhh-ccchhccCchhhhhhhhhcchhhhcccccccCCC-------ccc
Confidence 88999999999999999999999887666655443 12111 123333222 112
Q ss_pred EEEEEcCC--------CeeeeEec------cCCCcEEEEEEecCCCEEEEEeC--CCcEEEEECCCCceEEEEEecccCC
Q 001042 1028 ARMWSISR--------GTCDAVLA------CHAGPVQCVEYSSSDRGIITGSS--DGLLRFWENDDGGIKCVKNVTIHSS 1091 (1178)
Q Consensus 1028 I~iwd~~~--------~~~~~~~~------~h~~~I~~l~~spdg~~L~sgs~--Dg~I~iwd~~~~~~~~~~~~~~h~~ 1091 (1178)
..+|.... ...+..++ ...-.+.-++|++|..+++|-.+ -+.+-+||+...+...+. .+.|..
T Consensus 286 a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL-iQk~pi 364 (447)
T KOG4497|consen 286 AHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL-IQKHPI 364 (447)
T ss_pred cCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh-hhccce
Confidence 22232210 11112222 22345778999999999988753 356899999876322211 122333
Q ss_pred cEEEEecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCc
Q 001042 1092 AILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGL 1168 (1178)
Q Consensus 1092 ~i~~is~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~ 1168 (1178)
.....+|....|+.+.....+++|..... .++..+ +..-.|..+.|.-+|..++..|.|..
T Consensus 365 raf~WdP~~prL~vctg~srLY~W~psg~---------------~~V~vP-~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 365 RAFEWDPGRPRLVVCTGKSRLYFWAPSGP---------------RVVGVP-KKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred eEEEeCCCCceEEEEcCCceEEEEcCCCc---------------eEEecC-CCCceeeeEEecCCCcEEEEEcCCce
Confidence 33344788888888888888999997532 222222 22256999999999999999998863
No 216
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=2.1e-12 Score=154.11 Aligned_cols=233 Identities=10% Similarity=0.076 Sum_probs=160.3
Q ss_pred CCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCC---CeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCC
Q 001042 902 DQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHD---GTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTG 977 (1178)
Q Consensus 902 dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~d---g~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~ 977 (1178)
+..|.+||.+... ...+..|...+....|+ +++.++.++.+ ..|++||+.+++.... .........++|+|||+
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSPDG~ 260 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSPDGS 260 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECCCCC
Confidence 4689999987554 45677788899999999 77788877643 4799999988764322 12223344689999999
Q ss_pred EEEEEe-CCCeEE--EEECCCCceEEEEecCCccEEEEEEcC--CEEEEE-eCCCcEEEEEcCCCe-eeeEeccCCCcEE
Q 001042 978 ILAAGG-RDAVAN--IWDIRAGRQMHKFLGHTKWIRSIRMDR--DTVITG-SDDWTARMWSISRGT-CDAVLACHAGPVQ 1050 (1178)
Q Consensus 978 ~l~sgs-~dg~I~--lwD~~~~~~~~~~~~~~~~v~~l~~~~--~~l~sg-s~dg~I~iwd~~~~~-~~~~~~~h~~~I~ 1050 (1178)
.|+.++ .+|.+. +||+.+++. ..+..+...+.+..|++ +.++.+ ..+|...+|++.... ....+ .+.+ .
T Consensus 261 ~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~ 336 (429)
T PRK01742 261 RLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--Y 336 (429)
T ss_pred EEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--C
Confidence 888765 577655 456666553 44555666677788854 455544 467888888875422 22222 3443 4
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEEecCCCEEEEEeCCCcEEEEEcCCCccccccCCCC
Q 001042 1051 CVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGS 1130 (1178)
Q Consensus 1051 ~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~ 1130 (1178)
+..|+|||++++.++.++ +.+||+.++....+. ..+...-.+++|||++++.++.++.+.+|++... +|
T Consensus 337 ~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt--~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~-------~G- 405 (429)
T PRK01742 337 SAQISADGKTLVMINGDN-VVKQDLTSGSTEVLS--STFLDESPSISPNGIMIIYSSTQGLGKVLQLVSA-------DG- 405 (429)
T ss_pred CccCCCCCCEEEEEcCCC-EEEEECCCCCeEEec--CCCCCCCceECCCCCEEEEEEcCCCceEEEEEEC-------CC-
Confidence 678999999998887765 566999988543322 2222333467999999999999999998886421 33
Q ss_pred CccceeEeeccCCCcccEEEEEEcCC
Q 001042 1131 KMSGWQLYRTPQKTVAVVRCIASDLE 1156 (1178)
Q Consensus 1131 ~~~~~~~~~~~~~h~~~V~~lafspd 1156 (1178)
...+.+.+|.+.+...+|||-
T Consensus 406 -----~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 406 -----RFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred -----CceEEccCCCCCCCCcccCCC
Confidence 344556677788889999984
No 217
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.47 E-value=1.8e-13 Score=149.78 Aligned_cols=264 Identities=16% Similarity=0.213 Sum_probs=202.6
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCE
Q 001042 888 AINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAV 967 (1178)
Q Consensus 888 ~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I 967 (1178)
.++.+|.+++.|+..|.+-.+|+.+++....+. -...|.++.|.....+++......+.|||- .|..++.++. ...|
T Consensus 136 ~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~-~GtElHClk~-~~~v 212 (545)
T KOG1272|consen 136 DYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVAQKKYVYVYDN-NGTELHCLKR-HIRV 212 (545)
T ss_pred eecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhhhhceEEEecC-CCcEEeehhh-cCch
Confidence 457899999999999999999999999988776 356788999985555666667788999995 5666666644 3578
Q ss_pred EEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEcCC--EEEEEeCCCcEEEEEcCCCeeeeEeccC
Q 001042 968 LCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRGTCDAVLACH 1045 (1178)
Q Consensus 968 ~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~--~l~sgs~dg~I~iwd~~~~~~~~~~~~h 1045 (1178)
..+.|-|..-+|++++..|.++--|+.+|+.+..+....+.+..++-+|. .+-+|..+|+|.+|.....+++..+.+|
T Consensus 213 ~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH 292 (545)
T KOG1272|consen 213 ARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCH 292 (545)
T ss_pred hhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhc
Confidence 89999999999999999999999999999999998888888888887764 7888999999999999999999999999
Q ss_pred CCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEec-ccCCcEEEEecCCCEEEEEeCCCcEEEEEcCCCcccc
Q 001042 1046 AGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVT-IHSSAILSINAGDHWLGIGAADNSMSLFHRPQERLGG 1124 (1178)
Q Consensus 1046 ~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~-~h~~~i~~is~dg~~Lasgs~Dg~I~iwd~~~~~~~~ 1124 (1178)
.++|.++++.++|+|++|.|.|..++|||+++-. .+.++. .|...-.++|..| +++.+....+.||.-...
T Consensus 293 ~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~--ql~t~~tp~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~---- 364 (545)
T KOG1272|consen 293 RGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY--QLHTYRTPHPASNLSLSQKG--LLALSYGDHVQIWKDALK---- 364 (545)
T ss_pred CCCcceEEECCCCcEEeecccccceeEeeecccc--ccceeecCCCcccccccccc--ceeeecCCeeeeehhhhc----
Confidence 9999999999999999999999999999999763 233322 3444445555444 333445568999964311
Q ss_pred ccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCc
Q 001042 1125 FSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGL 1168 (1178)
Q Consensus 1125 ~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~ 1168 (1178)
+.+..- ..... ..-.+.|.++.|.|-...|..|...|.
T Consensus 365 --~s~~~~---~pYm~-H~~~~~V~~l~FcP~EDvLGIGH~~G~ 402 (545)
T KOG1272|consen 365 --GSGHGE---TPYMN-HRCGGPVEDLRFCPYEDVLGIGHAGGI 402 (545)
T ss_pred --CCCCCC---cchhh-hccCcccccceeccHHHeeeccccCCc
Confidence 011100 11111 111247899999998777776655553
No 218
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.47 E-value=4.5e-12 Score=133.35 Aligned_cols=222 Identities=16% Similarity=0.181 Sum_probs=171.9
Q ss_pred EEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCC-ceeeEeecccccceEE--EecCCCEEE
Q 001042 821 RIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRG-SELRATLKGHTRTVRA--INSDRGKVV 897 (1178)
Q Consensus 821 ~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~-~~~~~~l~~h~~~V~~--~s~d~~~l~ 897 (1178)
..+.--..+|+|.+|+ +|+..+|.+.....|.||.....+ .+...++..|...|++ +++..+.|+
T Consensus 4 ~~~~~~~~pitchAwn------------~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIv 71 (361)
T KOG1523|consen 4 VVFHRLLEPITCHAWN------------SDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIV 71 (361)
T ss_pred EEeeeccCceeeeeec------------CCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCcee
Confidence 3444456789999997 899999999999999999987555 6778899999999885 589999999
Q ss_pred EEeCCCcEEEEEC-CCC--cEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEE----EEecCCCCCEEE
Q 001042 898 SGSDDQSVLVWDK-QTS--QLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCV----ATVGRCSSAVLC 969 (1178)
Q Consensus 898 sgs~dg~I~iwd~-~t~--~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~----~~~~~~~~~I~~ 969 (1178)
+|+.|..-++|.. ..+ ++...+..++...+++.|+ .++.|++|+....|.+|-.+...-- +.-+.+.+.|++
T Consensus 72 tcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~s 151 (361)
T KOG1523|consen 72 TCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTS 151 (361)
T ss_pred EccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceee
Confidence 9999999999998 433 3445566789999999999 6889999999999999987654322 122345788999
Q ss_pred EEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEcCCEEEEEeCCCcEEEEEcC--CCeeeeEeccCCC
Q 001042 970 MEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSIS--RGTCDAVLACHAG 1047 (1178)
Q Consensus 970 l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~~l~sgs~dg~I~iwd~~--~~~~~~~~~~h~~ 1047 (1178)
++|+|++-++++|+.|+..+++..- ++....... -.-|+-+ =|+.+..+....+
T Consensus 152 ldWhpnnVLlaaGs~D~k~rVfSay----IK~Vdekpa--------------------p~pWgsk~PFG~lm~E~~~~gg 207 (361)
T KOG1523|consen 152 LDWHPNNVLLAAGSTDGKCRVFSAY----IKGVDEKPA--------------------PTPWGSKMPFGQLMSEASSSGG 207 (361)
T ss_pred eeccCCcceecccccCcceeEEEEe----eeccccCCC--------------------CCCCccCCcHHHHHHhhccCCC
Confidence 9999999999999999999998641 111111000 0112211 1445555555678
Q ss_pred cEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 001042 1048 PVQCVEYSSSDRGIITGSSDGLLRFWENDDG 1078 (1178)
Q Consensus 1048 ~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~ 1078 (1178)
.+..+.|+|+|..|+-.+.|+.+.+-|....
T Consensus 208 wvh~v~fs~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 208 WVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred ceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence 9999999999999999999999999998765
No 219
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=2.2e-12 Score=153.97 Aligned_cols=228 Identities=15% Similarity=0.149 Sum_probs=162.0
Q ss_pred eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCC---CcEEEE
Q 001042 790 VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTD---CLVKIW 866 (1178)
Q Consensus 790 I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~D---g~I~iW 866 (1178)
|.+||.++.. .+.+..|...|.+.+|| |||+.|+.++.+ ..|++|
T Consensus 186 i~i~d~dg~~--------------------~~~lt~~~~~v~~p~wS------------PDG~~la~~s~~~~~~~i~i~ 233 (429)
T PRK01742 186 VRVADYDGFN--------------------QFIVNRSSQPLMSPAWS------------PDGSKLAYVSFENKKSQLVVH 233 (429)
T ss_pred EEEECCCCCC--------------------ceEeccCCCccccceEc------------CCCCEEEEEEecCCCcEEEEE
Confidence 8999987544 34577788899999998 899999988754 369999
Q ss_pred cCCCCCceeeEeecccccceEEEecCCCEEEEEe-CCCcEEEE--ECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEe-
Q 001042 867 DPSLRGSELRATLKGHTRTVRAINSDRGKVVSGS-DDQSVLVW--DKQTSQLLEELKGHDAQVSCVRML-SGERVLTAS- 941 (1178)
Q Consensus 867 d~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sgs-~dg~I~iw--d~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs- 941 (1178)
|+.......+..+.+|... .+|+|||+.|+.++ .+|.+.|| |+.+++. ..+..+...+....|+ ++..++.++
T Consensus 234 dl~tg~~~~l~~~~g~~~~-~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~ 311 (429)
T PRK01742 234 DLRSGARKVVASFRGHNGA-PAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSD 311 (429)
T ss_pred eCCCCceEEEecCCCccCc-eeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEEC
Confidence 9874333444555565543 47899999988765 67766555 6666654 5566677778889999 666666544
Q ss_pred CCCeEEEEeCCCC-eEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEE--cCCE
Q 001042 942 HDGTVKMWDVRTD-TCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM--DRDT 1018 (1178)
Q Consensus 942 ~dg~V~iwd~~~~-~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~--~~~~ 1018 (1178)
.+|...+|++... .....+ .+.. .+..|+|+|+.++.++.++ +.+||+.+++......... ..+.+| ++++
T Consensus 312 ~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~--~~~~~~sPdG~~ 385 (429)
T PRK01742 312 RSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTFL--DESPSISPNGIM 385 (429)
T ss_pred CCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCCC--CCCceECCCCCE
Confidence 5788888876432 222223 3332 4578999999998887765 5669999887543322222 234455 5668
Q ss_pred EEEEeCCCcEEEEEc--CCCeeeeEeccCCCcEEEEEEecC
Q 001042 1019 VITGSDDWTARMWSI--SRGTCDAVLACHAGPVQCVEYSSS 1057 (1178)
Q Consensus 1019 l~sgs~dg~I~iwd~--~~~~~~~~~~~h~~~I~~l~~spd 1057 (1178)
++.++.+|.+.+|++ .+|.....+..|.+.+...+|+|-
T Consensus 386 i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 386 IIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 999999998888876 357888888888888999999984
No 220
>PF09794 Avl9: Transport protein Avl9; InterPro: IPR018307 This entry represents the late secretory protein Avl9, which is required for the generation of secretory vesicles as well as for actin polarization and polarized growth. Avl9 is involved in exocytic transport from the Golgi. It has been speculated that Avl9 could play a role in deforming membranes for vesicle fission and/or in recruiting cargo [].
Probab=99.46 E-value=5.7e-12 Score=142.13 Aligned_cols=314 Identities=19% Similarity=0.238 Sum_probs=195.9
Q ss_pred EEEEEeccCCCcccCCCCCCCCCCccccccccccccccCC--CCCCCCCCCCCCcccCCCceEEeecCCCCCCCCCCCce
Q 001042 6 EYFVVCGIGPEIRTLDGSKGYHGPEYYYLSSVLDQFPPLN--HSLYTPPPPQLSTCVLPAGVQFYSSGFDSDDPSTFPRT 83 (1178)
Q Consensus 6 dyfvvvG~~~~~~~~~~~~~~~~~~~~~~p~vl~~yP~~~--~~~~~~~~~~v~~fc~P~g~~~~~~~~~~~~~~~~p~~ 83 (1178)
-+++|||.+++. -|+|-+-||+.. ....+..-..+|..+||+|.--.. + .+
T Consensus 2 ~~i~vV~Fhh~~----------------G~~vE~~ypp~~~~~~~~~~~~~~LpflAlPDg~h~~~-------e----d~ 54 (379)
T PF09794_consen 2 LCICVVGFHHER----------------GPEVEYWYPPDSSDDPLSPQEWSNLPFLALPDGAHNSE-------E----DF 54 (379)
T ss_pred eEEEEEeccccc----------------CCeEEEEeCCCCCccccchhhHhhCCccccCCccccCC-------C----ce
Confidence 478899988873 267888999522 222223336789999999973311 1 13
Q ss_pred eEEEEE-----cCCCCeEEEEEEEecCCCCH-HHHHhccCCCCccCCeEEEEEcCCChHHHHHHHHHHHHHHhhccCCC-
Q 001042 84 YPIVLT-----EGDGSKIYVSCISFRDPVSE-DIAEAYRIPANSFADKCICLVSRSPSFRILRNALEEIYSLCFLSDGS- 156 (1178)
Q Consensus 84 f~fvlT-----~~~g~~~Yg~cl~f~e~~~~-~~~~~~~~~~~~~~~~~icllS~~p~~~~f~~~L~~i~~~~~~~~~~- 156 (1178)
..|.|- ..+....||+.. ++++.. ++.+....-...++.||+|+||+.|+|..|++-|..+-..++..+.-
T Consensus 55 ~yF~l~~~~~~~~~~~~lfGisc--~RQi~~~~L~~~~~dvtRs~vQKsVvViS~~P~fg~~~~kL~~vt~ayF~q~dF~ 132 (379)
T PF09794_consen 55 SYFTLPYDASLNRDATTLFGISC--FRQIKSSDLKNRDPDVTRSTVQKSVVVISRLPFFGLIKEKLSIVTPAYFEQGDFS 132 (379)
T ss_pred EEEEeccCCCCCCCCceeeceee--HhhcCHHHhccCCCcccchheEEEEEEEECCCcHHHHHHHHHHHHHHHHhcCCCc
Confidence 335555 345556677753 445443 22222122235689999999999999999999999998887753321
Q ss_pred Ccc-HHHHHHhhcccCCCCCCCCceEEeeeccceeEEeCCCCCCCCCCCcchHHHhccCChhhHHHHHHHHhccccEEEE
Q 001042 157 SKP-LWDVISHLVSNVPLPTPGKNRVLFAIENCLLSVEAPPKEGLPHADISFQPLVQLLDVDNLITLFTAVLLERRILLR 235 (1178)
Q Consensus 157 ~~~-~~~~i~~~l~~~p~P~~g~~~~~~~~~~~~~~~~~p~~~~lp~~~~~~~~l~~~l~~~~~l~l~~~~L~E~~il~~ 235 (1178)
... +++...++-... -+..+.. ....--..+.++..++..+. .+++.||.++|+|+||||+
T Consensus 133 ~~~iL~~~~~~L~~~~-~~~~~~~----------------~~~~~~y~glslr~lv~~fr-~~~LvL~K~LLLekKIlfy 194 (379)
T PF09794_consen 133 DTEILEDFYENLNNSF-KSKNGES----------------LQESDLYVGLSLRELVHNFR-HKTLVLFKALLLEKKILFY 194 (379)
T ss_pred hhHHHHHHHHHHHHHh-hcccccc----------------ccchhhhcCCCHHHHHHHHh-HHHHHHHHHHHhcCCeEEE
Confidence 122 444444433221 1111110 01112334567889999998 6789999999999999999
Q ss_pred eCCcchHHHHHHHHHHcccc----cC------------------------------------------CCceeecccchh
Q 001042 236 SNKYSLLTLVSEAICHLIYP----FR------------------------------------------WQHVYIPLLFFS 269 (1178)
Q Consensus 236 s~~~~~ls~~~~al~~ll~P----f~------------------------------------------w~~~~IP~lP~~ 269 (1178)
|++.+.++..+.||+||+=. |+ =-+.+-|.+|..
T Consensus 195 ~s~ve~l~~~~~sLiSLiPgli~~L~d~~~p~~~~~~~~~~~~~~~sl~ts~r~s~l~~~GlPL~IF~kg~~f~PYlpLQ 274 (379)
T PF09794_consen 195 GSPVERLCNFQLSLISLIPGLINNLQDSASPLLDSYESNWPLSKPTSLKTSDRKSLLRFYGLPLQIFGKGSLFQPYLPLQ 274 (379)
T ss_pred cCCHHHHHHHHHHHHHHhHHHHHhHhhccCcccchhhhccccCCCcccccCcccchHHHcCCCeeecCCCceecCcccHH
Confidence 99999999999999987521 21 126788999999
Q ss_pred hhhhccCC--cceEEeecCCCCccccCCCcEEEEEcCCCeeeCCCC-C---CCCCchhhhhhHHHHHHhcCCCccccccc
Q 001042 270 GVDYIDAP--TPYMMGLHSGVDTSNLAMDGVVVVDLEYNRICTTEE-I---PPIPEPELSSLRGDILKLLYPNVVGIDRM 343 (1178)
Q Consensus 270 l~~~l~aP--~P~iiGv~~~~~~~~~~~~~~~~vdlD~~~i~~~~~-~---~~lP~~~~~~l~~~l~~~l~~~~~~~~~~ 343 (1178)
.+|.|.++ --|+||............--=++||+|+++|+..+. + -.|... -.+....+.+.........+..
T Consensus 275 qld~L~~~~~~s~lvGtTN~Lf~qqk~~~~DvlVdld~~~i~i~d~~L~~~l~LT~~-D~rfid~l~~~v~~~~~~~~~~ 353 (379)
T PF09794_consen 275 QLDLLSDPNTKSYLVGTTNSLFLQQKDLYADVLVDLDTGTIEILDPSLKRALSLTSA-DKRFIDNLVKHVEETWDEADPD 353 (379)
T ss_pred HHHHhhccCccEEEEeeChHHHHhCcccccCEEEEecCCEEEEcCHhHHhhhcCCHH-HHHHHHHHHHHhhccccccccc
Confidence 99999444 579999976542222222012789999999998742 2 122221 2233334433333322211110
Q ss_pred CCCCCCcccccccCCCCchhhhHHHHHHHHHHHHHHHh
Q 001042 344 NAGGSSEHYSKVCSKPWGEEHDLQLRFIFLKFLASILG 381 (1178)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~ir~~Fl~~~~~ll~ 381 (1178)
. ...+.-|.-||.-|-.++..++.
T Consensus 354 ~--------------~~~~GSddwIR~qFe~Yl~~LLs 377 (379)
T PF09794_consen 354 R--------------TGFEGSDDWIRAQFEDYLLSLLS 377 (379)
T ss_pred c--------------cCCCCcHHHHHHHHHHHHHHHHh
Confidence 0 11234567899999999888874
No 221
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.44 E-value=3.2e-12 Score=132.45 Aligned_cols=239 Identities=17% Similarity=0.187 Sum_probs=175.9
Q ss_pred ccCCcceEEEEecCCCC-----cccccccceeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeecc
Q 001042 765 SGIGRSWVQSMFSREAS-----SRSHSFSRVRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKR 839 (1178)
Q Consensus 765 ~gh~~~i~~~aFSpdg~-----~las~~~dI~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~ 839 (1178)
..|.-++..+.|.||.. +||++++-+|+|.+...+......... ....-..|.+++++..|+.
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L----------~~~kns~~~aPlTSFDWne-- 160 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVL----------NNNKNSEFCAPLTSFDWNE-- 160 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhh----------ccCcccccCCccccccccc--
Confidence 57888999999999984 577766669999988543211100000 0111234678999999974
Q ss_pred ceeccccccCCCCEEEEEeCCCcEEEEcCCCC-CceeeEeecccccceEEEe--cC-CCEEEEEeCCCcEEEEECCCCcE
Q 001042 840 EVWDLVGDREDAGFFISGSTDCLVKIWDPSLR-GSELRATLKGHTRTVRAIN--SD-RGKVVSGSDDQSVLVWDKQTSQL 915 (1178)
Q Consensus 840 ~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~-~~~~~~~l~~h~~~V~~~s--~d-~~~l~sgs~dg~I~iwd~~t~~~ 915 (1178)
-|.+++.+.|-|-+..|||++.+ ...+...+-.|...|..+. .+ -+.+|+.|.||.++++|++..+.
T Consensus 161 ---------~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH 231 (364)
T KOG0290|consen 161 ---------VDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH 231 (364)
T ss_pred ---------CCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc
Confidence 67889999999999999999844 3445677889999999763 33 36799999999999999987654
Q ss_pred EEEec---CCCCceEEEEEe--CCCeEEEEeCC-CeEEEEeCCCC-eEEEEecCCCCCEEEEEEeC-CCCEEEEEeCCCe
Q 001042 916 LEELK---GHDAQVSCVRML--SGERVLTASHD-GTVKMWDVRTD-TCVATVGRCSSAVLCMEYDD-STGILAAGGRDAV 987 (1178)
Q Consensus 916 ~~~l~---~h~~~V~~l~~~--~~~~l~sgs~d-g~V~iwd~~~~-~~~~~~~~~~~~I~~l~~sp-~~~~l~sgs~dg~ 987 (1178)
-..+. ....+...++|+ +.+++++-..| ..|.+.|++.. ..+..+.+|.+.|++++|.| ....|++++.|..
T Consensus 232 STIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~q 311 (364)
T KOG0290|consen 232 STIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQ 311 (364)
T ss_pred ceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcce
Confidence 33332 225677888898 56677766554 57999999874 56788999999999999999 5678999999999
Q ss_pred EEEEECCCCce------EEEEecCCccEEEEEEc---CCEEEEEeCC
Q 001042 988 ANIWDIRAGRQ------MHKFLGHTKWIRSIRMD---RDTVITGSDD 1025 (1178)
Q Consensus 988 I~lwD~~~~~~------~~~~~~~~~~v~~l~~~---~~~l~sgs~d 1025 (1178)
+.+||+.+.-. +..+ ...+.|+.+.|. ++.++.+...
T Consensus 312 aliWDl~q~~~~~~~dPilay-~a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 312 ALIWDLQQMPRENGEDPILAY-TAGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred EEEEecccccccCCCCchhhh-hccceeeeeeecccCCCEEEEEecC
Confidence 99999975322 2222 256688999994 5677777654
No 222
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=1.3e-11 Score=138.42 Aligned_cols=276 Identities=12% Similarity=0.163 Sum_probs=194.0
Q ss_pred ccCCcceEEEEecCCCCcccccc-cc--eeecccccccCCCCCCCCCCCcCCcccccceEEeccc-ccceEEEEeeeccc
Q 001042 765 SGIGRSWVQSMFSREASSRSHSF-SR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGH-AGAITALHCVTKRE 840 (1178)
Q Consensus 765 ~gh~~~i~~~aFSpdg~~las~~-~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH-~~~V~~l~fs~~~~ 840 (1178)
.++...-..+..||||+|+.+.+ .. |++||+..-. ++ +.-| ...|..+...
T Consensus 48 fe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS--------------------LK-FERhlDae~V~feiL---- 102 (703)
T KOG2321|consen 48 FEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS--------------------LK-FERHLDAEVVDFEIL---- 102 (703)
T ss_pred cCCccccceeEecCCCcEEEEecccCCceEEEEcccce--------------------ee-eeecccccceeEEEe----
Confidence 56667777889999999865544 44 9999998533 22 2333 2333333322
Q ss_pred eeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEEe-cCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 001042 841 VWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAIN-SDRGKVVSGSDDQSVLVWDKQTSQLLEEL 919 (1178)
Q Consensus 841 ~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s-~d~~~l~sgs~dg~I~iwd~~t~~~~~~l 919 (1178)
+.|-..++--..|.+|-+.... +... ..--...+.-.+++ +... |+.++....|+-.+++.|+.+..+
T Consensus 103 -------sDD~SK~v~L~~DR~IefHak~--G~hy-~~RIP~~GRDm~y~~~scD-ly~~gsg~evYRlNLEqGrfL~P~ 171 (703)
T KOG2321|consen 103 -------SDDYSKSVFLQNDRTIEFHAKY--GRHY-RTRIPKFGRDMKYHKPSCD-LYLVGSGSEVYRLNLEQGRFLNPF 171 (703)
T ss_pred -------ccchhhheEeecCceeeehhhc--Ceee-eeecCcCCccccccCCCcc-EEEeecCcceEEEEcccccccccc
Confidence 2555556666667777766521 2111 11111122222333 3333 445555567999999999999999
Q ss_pred cCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecC------CC-----CCEEEEEEeCCCCEEEEEeCCCe
Q 001042 920 KGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGR------CS-----SAVLCMEYDDSTGILAAGGRDAV 987 (1178)
Q Consensus 920 ~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~------~~-----~~I~~l~~sp~~~~l~sgs~dg~ 987 (1178)
....+.++++..+ -..++++|+.+|.|..||.++...+.++.. +. ..|+++.|+.+|-.+++|+.+|.
T Consensus 172 ~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~ 251 (703)
T KOG2321|consen 172 ETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGS 251 (703)
T ss_pred ccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCc
Confidence 9888999999998 466777888899999999998776655532 22 24999999999999999999999
Q ss_pred EEEEECCCCceEEEE-ecCCccEEEEEEcC---CEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEE
Q 001042 988 ANIWDIRAGRQMHKF-LGHTKWIRSIRMDR---DTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIIT 1063 (1178)
Q Consensus 988 I~lwD~~~~~~~~~~-~~~~~~v~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~s 1063 (1178)
+.+||+++.+++..- .+..-+|..+.|.. .--+.......++|||-.+|+....+.. ...++.+++-|++.++++
T Consensus 252 v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~ 330 (703)
T KOG2321|consen 252 VLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFFT 330 (703)
T ss_pred EEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeeccc-cCCcCceeeecCCceEEE
Confidence 999999998876543 33455788888832 2333344566899999999999888874 445999999999999999
Q ss_pred EeCCCcEEEEECCC
Q 001042 1064 GSSDGLLRFWENDD 1077 (1178)
Q Consensus 1064 gs~Dg~I~iwd~~~ 1077 (1178)
+-.++.+..|=+..
T Consensus 331 Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 331 ANESSKMHTYYIPS 344 (703)
T ss_pred ecCCCcceeEEccc
Confidence 98888887776554
No 223
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.42 E-value=1.9e-10 Score=133.10 Aligned_cols=295 Identities=12% Similarity=0.080 Sum_probs=184.5
Q ss_pred eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCC
Q 001042 790 VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPS 869 (1178)
Q Consensus 790 I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~ 869 (1178)
|.+.|.++.+ .+..+......-..+.|+ +||+++.+++.||.|.++|+.
T Consensus 18 v~viD~~t~~-------------------~~~~i~~~~~~h~~~~~s------------~Dgr~~yv~~rdg~vsviD~~ 66 (369)
T PF02239_consen 18 VAVIDGATNK-------------------VVARIPTGGAPHAGLKFS------------PDGRYLYVANRDGTVSVIDLA 66 (369)
T ss_dssp EEEEETTT-S-------------------EEEEEE-STTEEEEEE-T------------T-SSEEEEEETTSEEEEEETT
T ss_pred EEEEECCCCe-------------------EEEEEcCCCCceeEEEec------------CCCCEEEEEcCCCeEEEEECC
Confidence 8888888766 677776554433445565 999999999999999999987
Q ss_pred CCCceeeEeecccccc-eEEEecCCCEEEEEe-CCCcEEEEECCCCcEEEEecCC-------CCceEEEEEe-CCCeEEE
Q 001042 870 LRGSELRATLKGHTRT-VRAINSDRGKVVSGS-DDQSVLVWDKQTSQLLEELKGH-------DAQVSCVRML-SGERVLT 939 (1178)
Q Consensus 870 ~~~~~~~~~l~~h~~~-V~~~s~d~~~l~sgs-~dg~I~iwd~~t~~~~~~l~~h-------~~~V~~l~~~-~~~~l~s 939 (1178)
..+.+........+ -.++++||++++++. .++.+.++|.++.+.++.+... ...+..+..+ ....++.
T Consensus 67 --~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv 144 (369)
T PF02239_consen 67 --TGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVV 144 (369)
T ss_dssp --SSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEE
T ss_pred --cccEEEEEecCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEE
Confidence 44455555543333 347899999998775 6899999999999999887643 3456677666 4444555
Q ss_pred EeC-CCeEEEEeCCCCeEEE-EecCCCCCEEEEEEeCCCCEEEEE-eCCCeEEEEECCCCceEEEEec----CCccEE--
Q 001042 940 ASH-DGTVKMWDVRTDTCVA-TVGRCSSAVLCMEYDDSTGILAAG-GRDAVANIWDIRAGRQMHKFLG----HTKWIR-- 1010 (1178)
Q Consensus 940 gs~-dg~V~iwd~~~~~~~~-~~~~~~~~I~~l~~sp~~~~l~sg-s~dg~I~lwD~~~~~~~~~~~~----~~~~v~-- 1010 (1178)
.-. .+.|.+.|....+... .............|+|++++++++ ..++.|.++|.++++.+..+.. |..+..
T Consensus 145 ~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~ 224 (369)
T PF02239_consen 145 NLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF 224 (369)
T ss_dssp EETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE
T ss_pred EEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc
Confidence 444 5888888877654332 222345667889999999987665 4677999999999887765432 222222
Q ss_pred ---------EEEEcCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEE----eCCCcEEEEECCC
Q 001042 1011 ---------SIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITG----SSDGLLRFWENDD 1077 (1178)
Q Consensus 1011 ---------~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sg----s~Dg~I~iwd~~~ 1077 (1178)
...-.+...++.-..+.+.+||..+.+.++++....++ .-+..+|+++++++. ...++|.++|..+
T Consensus 225 php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~t 303 (369)
T PF02239_consen 225 PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKT 303 (369)
T ss_dssp EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCG
T ss_pred cCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcC
Confidence 22222333333334446778999999999999876666 778889999999988 4568999999998
Q ss_pred CceEEEEEecccCC-cE--EEEecCCCEEEEEeCCC--cEEEEEcCCC
Q 001042 1078 GGIKCVKNVTIHSS-AI--LSINAGDHWLGIGAADN--SMSLFHRPQE 1120 (1178)
Q Consensus 1078 ~~~~~~~~~~~h~~-~i--~~is~dg~~Lasgs~Dg--~I~iwd~~~~ 1120 (1178)
. .....+..... .+ ..++++|+.+..+..++ .|.+||..+.
T Consensus 304 l--~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl 349 (369)
T PF02239_consen 304 L--KVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTL 349 (369)
T ss_dssp T--EEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTT
T ss_pred c--ceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCc
Confidence 7 55555542222 24 34589999777665543 6999999854
No 224
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.42 E-value=2.7e-10 Score=120.21 Aligned_cols=278 Identities=13% Similarity=0.227 Sum_probs=181.8
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCc--eEEEEEeCCCeEEEEeCC------CeEEEEeCCCCeEEE
Q 001042 887 RAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQ--VSCVRMLSGERVLTASHD------GTVKMWDVRTDTCVA 958 (1178)
Q Consensus 887 ~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~--V~~l~~~~~~~l~sgs~d------g~V~iwd~~~~~~~~ 958 (1178)
.+|+.|...+++|..+| .+||+.+--+.......+.+. +.-+-|-.+-..++|+.+ +.|.|||=...+++.
T Consensus 11 vs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~i~ 89 (346)
T KOG2111|consen 11 VSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERCII 89 (346)
T ss_pred EEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCcEEE
Confidence 46788888888888776 899998764433222222222 222222223233344443 579999977777777
Q ss_pred EecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC-CCceEEEEecC--CccEEEEEEcCC--EEEE-EeCCCcEEEEE
Q 001042 959 TVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIR-AGRQMHKFLGH--TKWIRSIRMDRD--TVIT-GSDDWTARMWS 1032 (1178)
Q Consensus 959 ~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~-~~~~~~~~~~~--~~~v~~l~~~~~--~l~s-gs~dg~I~iwd 1032 (1178)
++ ....+|.++.+.++. +++. ..+.|++|... +.+.++.+... .....+++...+ .|+. |-.-|.|+|-|
T Consensus 90 el-~f~~~I~~V~l~r~r--iVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~d 165 (346)
T KOG2111|consen 90 EL-SFNSEIKAVKLRRDR--IVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVD 165 (346)
T ss_pred EE-EeccceeeEEEcCCe--EEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEE
Confidence 77 457889999998763 5444 45789999987 45666665432 334555554322 4443 44679999999
Q ss_pred cCCCee--eeEeccCCCcEEEEEEecCCCEEEEEeCCCc-EEEEECCCCceEEEEEec--ccCCcEEE--EecCCCEEEE
Q 001042 1033 ISRGTC--DAVLACHAGPVQCVEYSSSDRGIITGSSDGL-LRFWENDDGGIKCVKNVT--IHSSAILS--INAGDHWLGI 1105 (1178)
Q Consensus 1033 ~~~~~~--~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~-I~iwd~~~~~~~~~~~~~--~h~~~i~~--is~dg~~Las 1105 (1178)
+...+. ...+.+|.+.|.|++.+-+|..+||+|..|+ |||||..+|+ .+..+. .....|.+ +||++.+||+
T Consensus 166 L~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~--~l~E~RRG~d~A~iy~iaFSp~~s~Lav 243 (346)
T KOG2111|consen 166 LASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGT--LLQELRRGVDRADIYCIAFSPNSSWLAV 243 (346)
T ss_pred hhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCc--EeeeeecCCchheEEEEEeCCCccEEEE
Confidence 987655 4778899999999999999999999999997 7999999995 444443 23344554 4899999999
Q ss_pred EeCCCcEEEEEcCCCccccc--cCCC-C--Cc-----cceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 001042 1106 GAADNSMSLFHRPQERLGGF--SGTG-S--KM-----SGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLW 1172 (1178)
Q Consensus 1106 gs~Dg~I~iwd~~~~~~~~~--~~~g-~--~~-----~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IW 1172 (1178)
+|+.|+++|+.+........ +... . .+ ..|...+ +.-..+...-++|-.+.+.++..+.||+-.-+
T Consensus 244 sSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~-f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~ 319 (346)
T KOG2111|consen 244 SSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAK-FQLPQGTQCIIAFGSETNTVIAICADGSYYKF 319 (346)
T ss_pred EcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEE-EEccCCCcEEEEecCCCCeEEEEEeCCcEEEE
Confidence 99999999999875332111 0000 0 00 0122211 11123456667888886667777788875443
No 225
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.41 E-value=2.8e-10 Score=120.12 Aligned_cols=226 Identities=14% Similarity=0.235 Sum_probs=158.8
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEEecCCCEEE-EEeCC------CcEEEEECCCCcEEEEecC
Q 001042 849 EDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVV-SGSDD------QSVLVWDKQTSQLLEELKG 921 (1178)
Q Consensus 849 ~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~-sgs~d------g~I~iwd~~t~~~~~~l~~ 921 (1178)
.|...++.|.++| .+||+.+.-............-.+..+-...++++ +||.+ ..+.|||-...+++.++.
T Consensus 15 QD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~- 92 (346)
T KOG2111|consen 15 QDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERCIIELS- 92 (346)
T ss_pred cCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCcEEEEEE-
Confidence 8888999999887 99999773111111111111112222223334444 44433 479999977777777776
Q ss_pred CCCceEEEEEeCCCeEEEEeCCCeEEEEeCCC-CeEEEEecCC--CCCEEEEEEeCCCCEEEE-EeCCCeEEEEECCCCc
Q 001042 922 HDAQVSCVRMLSGERVLTASHDGTVKMWDVRT-DTCVATVGRC--SSAVLCMEYDDSTGILAA-GGRDAVANIWDIRAGR 997 (1178)
Q Consensus 922 h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~-~~~~~~~~~~--~~~I~~l~~sp~~~~l~s-gs~dg~I~lwD~~~~~ 997 (1178)
-..+|.++.+..+. +++. ..+.|.+|...+ -+.++.+... .....+++-+.+...|+. |-.-|.|.+-|+...+
T Consensus 93 f~~~I~~V~l~r~r-iVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~ 170 (346)
T KOG2111|consen 93 FNSEIKAVKLRRDR-IVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTK 170 (346)
T ss_pred eccceeeEEEcCCe-EEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcC
Confidence 56789999886554 4433 367899999873 3444444322 233444444444555555 3456999999998766
Q ss_pred e--EEEEecCCccEEEEEE--cCCEEEEEeCCCc-EEEEEcCCCeeeeEecc--CCCcEEEEEEecCCCEEEEEeCCCcE
Q 001042 998 Q--MHKFLGHTKWIRSIRM--DRDTVITGSDDWT-ARMWSISRGTCDAVLAC--HAGPVQCVEYSSSDRGIITGSSDGLL 1070 (1178)
Q Consensus 998 ~--~~~~~~~~~~v~~l~~--~~~~l~sgs~dg~-I~iwd~~~~~~~~~~~~--h~~~I~~l~~spdg~~L~sgs~Dg~I 1070 (1178)
. ...+.+|...|.|++. +|..+|++|..|+ |||||..+|+.+..+.. ....|.+++|||++.+|+++|..|++
T Consensus 171 ~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTl 250 (346)
T KOG2111|consen 171 PNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTL 250 (346)
T ss_pred cCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeE
Confidence 5 4778899999999999 5779999999998 89999999999999874 34579999999999999999999999
Q ss_pred EEEECCCC
Q 001042 1071 RFWENDDG 1078 (1178)
Q Consensus 1071 ~iwd~~~~ 1078 (1178)
.++.+...
T Consensus 251 HiF~l~~~ 258 (346)
T KOG2111|consen 251 HIFSLRDT 258 (346)
T ss_pred EEEEeecC
Confidence 99998753
No 226
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.41 E-value=4.9e-10 Score=129.69 Aligned_cols=306 Identities=13% Similarity=0.139 Sum_probs=191.3
Q ss_pred CCEE-EEEeCCCcEEEEcCCCCCceeeEeecccccc--eEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceE
Q 001042 851 AGFF-ISGSTDCLVKIWDPSLRGSELRATLKGHTRT--VRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVS 927 (1178)
Q Consensus 851 ~~~L-asgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~--V~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~ 927 (1178)
++++ ++-..+|.|.+.|.. ..+....+...... ...+++||+++++++.||.|.++|+.+++.+.+++.. ....
T Consensus 5 ~~l~~V~~~~~~~v~viD~~--t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~ 81 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGA--TNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPR 81 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETT--T-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEE
T ss_pred ccEEEEEecCCCEEEEEECC--CCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcc
Confidence 3444 556678999999965 56666666644332 2356899999999999999999999999999998854 4467
Q ss_pred EEEEe-CCCeEEEEe-CCCeEEEEeCCCCeEEEEecC-------CCCCEEEEEEeCCCCEEEEEe-CCCeEEEEECCCCc
Q 001042 928 CVRML-SGERVLTAS-HDGTVKMWDVRTDTCVATVGR-------CSSAVLCMEYDDSTGILAAGG-RDAVANIWDIRAGR 997 (1178)
Q Consensus 928 ~l~~~-~~~~l~sgs-~dg~V~iwd~~~~~~~~~~~~-------~~~~I~~l~~sp~~~~l~sgs-~dg~I~lwD~~~~~ 997 (1178)
+++++ +|+++++++ .++.+.++|.++.+.++.+.. ....+.++..++....++..- ..+.|.+.|....+
T Consensus 82 ~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~ 161 (369)
T PF02239_consen 82 GIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPK 161 (369)
T ss_dssp EEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSS
T ss_pred eEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccc
Confidence 78888 788877665 689999999999998887743 234677888888888555554 45889999987765
Q ss_pred eEE-EEecCCccEEEEEEcCC--EE-EEEeCCCcEEEEEcCCCeeeeEec----cCCCcEEEEEEecC----------CC
Q 001042 998 QMH-KFLGHTKWIRSIRMDRD--TV-ITGSDDWTARMWSISRGTCDAVLA----CHAGPVQCVEYSSS----------DR 1059 (1178)
Q Consensus 998 ~~~-~~~~~~~~v~~l~~~~~--~l-~sgs~dg~I~iwd~~~~~~~~~~~----~h~~~I~~l~~spd----------g~ 1059 (1178)
.+. +............|+++ ++ ++...+..|.++|..+++.+..+. .|..++..+ .+|. +.
T Consensus 162 ~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~ 240 (369)
T PF02239_consen 162 NLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGY 240 (369)
T ss_dssp CEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSS
T ss_pred ccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccc
Confidence 443 23334455667778654 54 445567789999999988776553 233344332 1232 22
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEEecccCCcEE-EEecCCCEEEEE----eCCCcEEEEEcCCCccccccCCCCCccc
Q 001042 1060 GIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAIL-SINAGDHWLGIG----AADNSMSLFHRPQERLGGFSGTGSKMSG 1134 (1178)
Q Consensus 1060 ~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~-~is~dg~~Lasg----s~Dg~I~iwd~~~~~~~~~~~~g~~~~~ 1134 (1178)
..++.-..+.+.+||..+. +.++++........ ..+|+++++++. ...++|.++|..+.
T Consensus 241 ~~~~~ig~~~v~v~d~~~w--kvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl-------------- 304 (369)
T PF02239_consen 241 FAIPLIGTDPVSVHDDYAW--KVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL-------------- 304 (369)
T ss_dssp SEEEEEE--TTT-STTTBT--SEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGT--------------
T ss_pred eecccccCCccccchhhcC--eEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCc--------------
Confidence 2222222334556776665 66676666555543 448999999998 45589999999743
Q ss_pred eeEeeccC-CCcccEEEEEEcCCCCEEEEEe--CCCcEEEEECCCC
Q 001042 1135 WQLYRTPQ-KTVAVVRCIASDLERKRICSGG--RNGLLRLWEATIN 1177 (1178)
Q Consensus 1135 ~~~~~~~~-~h~~~V~~lafspdg~~Las~s--~Dg~V~IWdv~tg 1177 (1178)
+...++. +....+..+.|++||+.+..+. .+|.|.|||..|-
T Consensus 305 -~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl 349 (369)
T PF02239_consen 305 -KVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTL 349 (369)
T ss_dssp -EEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTT
T ss_pred -ceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCc
Confidence 2222221 1223488999999999765554 3447999999874
No 227
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=3.1e-12 Score=139.76 Aligned_cols=193 Identities=19% Similarity=0.224 Sum_probs=153.5
Q ss_pred cceEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecC
Q 001042 884 RTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGR 962 (1178)
Q Consensus 884 ~~V~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~ 962 (1178)
..+.+++.+|..+++|+.||++|||++.+...+.....|...|.++.|+ ++..+++.+.| ..+||++++|..+.....
T Consensus 147 ~k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 147 QKVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred ceEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 3677899999999999999999999999888888888999999999999 77789999999 899999999977766542
Q ss_pred --CCCCEEEEEEeCCC-----CEEEEEeCCCeEEEEECCCCce-----EEEEecCCccEEEEEE--cCCEEEEEeCCCcE
Q 001042 963 --CSSAVLCMEYDDST-----GILAAGGRDAVANIWDIRAGRQ-----MHKFLGHTKWIRSIRM--DRDTVITGSDDWTA 1028 (1178)
Q Consensus 963 --~~~~I~~l~~sp~~-----~~l~sgs~dg~I~lwD~~~~~~-----~~~~~~~~~~v~~l~~--~~~~l~sgs~dg~I 1028 (1178)
.+.....+.|+.++ ...+.....+.|..||+...+. ..+.......|++++. +|++++.|+.||.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 23345677787776 3333344556777777654322 1222233446888877 67799999999999
Q ss_pred EEEEcCCCeeeeEec-cCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 001042 1029 RMWSISRGTCDAVLA-CHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDD 1077 (1178)
Q Consensus 1029 ~iwd~~~~~~~~~~~-~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~ 1077 (1178)
-+++..+-+.++..+ .|...|+.+.|+||.+++++.+.|....+..+.-
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999998887776654 7999999999999999999999998888887654
No 228
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.39 E-value=3.9e-10 Score=132.85 Aligned_cols=296 Identities=14% Similarity=0.109 Sum_probs=187.6
Q ss_pred CCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEE
Q 001042 850 DAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCV 929 (1178)
Q Consensus 850 d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l 929 (1178)
.+..+++++.+|.|..+|... ++......-..........++..+++++.+|.+..+|..+|+.+....... .+.+.
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~t--G~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~ 140 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAET--GKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSP 140 (377)
T ss_pred ECCEEEEECCCCeEEEEEccC--CcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecC
Confidence 366788888899999999762 333332222222112234467888899999999999999999987765332 22222
Q ss_pred EEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEE-----EEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEec
Q 001042 930 RMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVL-----CMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLG 1004 (1178)
Q Consensus 930 ~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~-----~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~ 1004 (1178)
....++.++.++.+|.+..||.++|+.+........... +.... +..++.+..+|.+..+|.++|+.+.+...
T Consensus 141 p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~ 218 (377)
T TIGR03300 141 PLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRV 218 (377)
T ss_pred CEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeecc
Confidence 122456788888999999999999998877654332211 11121 34677888899999999999987755431
Q ss_pred CCc-----------cEEEEEEcCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEE
Q 001042 1005 HTK-----------WIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFW 1073 (1178)
Q Consensus 1005 ~~~-----------~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iw 1073 (1178)
... ...+....++.+++++.+|.++.||..+|+.+..... . ...... .++..++.++.||.+..+
T Consensus 219 ~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~-~-~~~~p~--~~~~~vyv~~~~G~l~~~ 294 (377)
T TIGR03300 219 ALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA-S-SYQGPA--VDDNRLYVTDADGVVVAL 294 (377)
T ss_pred ccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc-C-CccCce--EeCCEEEEECCCCeEEEE
Confidence 100 0112234567888899999999999999987766542 1 112222 246778888899999999
Q ss_pred ECCCCceEEEEEecc-cCCcEEEEecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEE
Q 001042 1074 ENDDGGIKCVKNVTI-HSSAILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIA 1152 (1178)
Q Consensus 1074 d~~~~~~~~~~~~~~-h~~~i~~is~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~la 1152 (1178)
|..+|+. +..... ......+....+..+++++.+|.++++|..++ +. +.....+...+..--
T Consensus 295 d~~tG~~--~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG---------~~------~~~~~~~~~~~~~sp 357 (377)
T TIGR03300 295 DRRSGSE--LWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDG---------SF------VARLKTDGSGIASPP 357 (377)
T ss_pred ECCCCcE--EEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCC---------CE------EEEEEcCCCccccCC
Confidence 9999843 222211 11111111235678899999999999998743 22 222222222221111
Q ss_pred EcCCCCEEEEEeCCCcEEEE
Q 001042 1153 SDLERKRICSGGRNGLLRLW 1172 (1178)
Q Consensus 1153 fspdg~~Las~s~Dg~V~IW 1172 (1178)
...++ .|+.++.||.|..+
T Consensus 358 ~~~~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 358 VVVGD-GLLVQTRDGDLYAF 376 (377)
T ss_pred EEECC-EEEEEeCCceEEEe
Confidence 12233 47788899998775
No 229
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.38 E-value=2.7e-10 Score=126.92 Aligned_cols=310 Identities=11% Similarity=0.120 Sum_probs=215.4
Q ss_pred CcceEEEEecCCCCcccccccc-eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceecccc
Q 001042 768 GRSWVQSMFSREASSRSHSFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVG 846 (1178)
Q Consensus 768 ~~~i~~~aFSpdg~~las~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~ 846 (1178)
.-++..+.|||.|+++++.... |.+|+-.... .+..+. ...|..+.||
T Consensus 32 ~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~-------------------~l~~~~--~~~V~~~~fS---------- 80 (561)
T COG5354 32 NWPVAYVSESPLGTYLFSEHAAGVECWGGPSKA-------------------KLVRFR--HPDVKYLDFS---------- 80 (561)
T ss_pred CcchhheeecCcchheehhhccceEEccccchh-------------------heeeee--cCCceecccC----------
Confidence 3566778999999999998888 9999877544 223332 2347777776
Q ss_pred ccCCCCEEEEEeCCC---------------cEEEEcCCCCCceeeEeecccccc-----eEEEecCCCEEEEEeCCCcEE
Q 001042 847 DREDAGFFISGSTDC---------------LVKIWDPSLRGSELRATLKGHTRT-----VRAINSDRGKVVSGSDDQSVL 906 (1178)
Q Consensus 847 ~s~d~~~Lasgs~Dg---------------~I~iWd~~~~~~~~~~~l~~h~~~-----V~~~s~d~~~l~sgs~dg~I~ 906 (1178)
|.+++|++-+..+ .+.+||+. ++.++..+.+...+ +..++.+.++.|-.. ...++
T Consensus 81 --P~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~--sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~ 155 (561)
T COG5354 81 --PNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIA--SGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLY 155 (561)
T ss_pred --cccceeeeeccCCccChhhccCCccccCceeEEecc--CceeEeeccccCCcccccceeeeeecchhhhhhc-cCeEE
Confidence 8999999976544 38999976 66666777665544 667888888877553 35799
Q ss_pred EEECCCCcEE-EEecC-CCCceEEEEEeCC---CeEE-----EEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCC
Q 001042 907 VWDKQTSQLL-EELKG-HDAQVSCVRMLSG---ERVL-----TASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDST 976 (1178)
Q Consensus 907 iwd~~t~~~~-~~l~~-h~~~V~~l~~~~~---~~l~-----sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~ 976 (1178)
|+++ ++... ..+.. ....|....|++. ..++ ..+.++++++|.+..+..+.+..-....=..+.|++.|
T Consensus 156 i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g 234 (561)
T COG5354 156 IHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLG 234 (561)
T ss_pred EEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCC
Confidence 9997 33321 11111 1245666667632 3334 24678899999998777665543333344568889988
Q ss_pred CEEEEEe-----------CCCeEEEEECCCCceEEEEecCCccEEEEEEcC--C--EEEEEeCCCcEEEEEcCCCeeeeE
Q 001042 977 GILAAGG-----------RDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR--D--TVITGSDDWTARMWSISRGTCDAV 1041 (1178)
Q Consensus 977 ~~l~sgs-----------~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~--~--~l~sgs~dg~I~iwd~~~~~~~~~ 1041 (1178)
+++++-. ....+++++++...+ .......++|..++|++ + -+++|..+..+.++|++.. ....
T Consensus 235 ~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~ 312 (561)
T COG5354 235 KYLLVLVMTHTKSNKSYFGESNLYLLRITERSI-PVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFY 312 (561)
T ss_pred ceEEEEEEEeeecccceeccceEEEEeeccccc-ceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEe
Confidence 8776532 234578888874333 32236688999999954 3 4556678899999998766 3332
Q ss_pred eccCCCcEEEEEEecCCCEEEEEeCC---CcEEEEECCCCceEEEEEecccCCcEEEEecCCCEEEEEeC------CCcE
Q 001042 1042 LACHAGPVQCVEYSSSDRGIITGSSD---GLLRFWENDDGGIKCVKNVTIHSSAILSINAGDHWLGIGAA------DNSM 1112 (1178)
Q Consensus 1042 ~~~h~~~I~~l~~spdg~~L~sgs~D---g~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~Lasgs~------Dg~I 1112 (1178)
.....=+.+.|+|.+++++.++-| |.+-+||..+. ..+...+.+.......++||++++.+... |..|
T Consensus 313 --~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r-f~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i 389 (561)
T COG5354 313 --FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR-FKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSI 389 (561)
T ss_pred --cCCcccccccccCcccEEEEecCCccccceEEeccCCc-eEEEEEeecCCceEeeccCCceEEEecCCCcccccCcce
Confidence 234556778899999999987754 67999998754 46666788888888889999999887643 7889
Q ss_pred EEEEcCC
Q 001042 1113 SLFHRPQ 1119 (1178)
Q Consensus 1113 ~iwd~~~ 1119 (1178)
.|||+..
T Consensus 390 ~l~~v~g 396 (561)
T COG5354 390 KLWDVYG 396 (561)
T ss_pred EEEEecC
Confidence 9999964
No 230
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=2e-10 Score=122.72 Aligned_cols=294 Identities=14% Similarity=0.151 Sum_probs=185.3
Q ss_pred eEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEec-ccccceEEEEeeeccceeccccc
Q 001042 771 WVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIR-GHAGAITALHCVTKREVWDLVGD 847 (1178)
Q Consensus 771 i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-gH~~~V~~l~fs~~~~~~~~~~~ 847 (1178)
+.-++|++.-.-+|++..| ||+||-.... ...++ .-...|+|++|-|
T Consensus 101 lr~~aWhqH~~~fava~nddvVriy~ksst~--------------------pt~Lks~sQrnvtclawRP---------- 150 (445)
T KOG2139|consen 101 LRGVAWHQHIIAFAVATNDDVVRIYDKSSTC--------------------PTKLKSVSQRNVTCLAWRP---------- 150 (445)
T ss_pred eeeEeechhhhhhhhhccCcEEEEeccCCCC--------------------CceecchhhcceeEEEecc----------
Confidence 4446888877778888777 9999876522 22232 2356799999986
Q ss_pred cCCCCEEEEEeCCCcEEEEcCCCCCce------------eeEeecccccceEE--EecCCCEEEEEeC-CCcEEEEECCC
Q 001042 848 REDAGFFISGSTDCLVKIWDPSLRGSE------------LRATLKGHTRTVRA--INSDRGKVVSGSD-DQSVLVWDKQT 912 (1178)
Q Consensus 848 s~d~~~Lasgs~Dg~I~iWd~~~~~~~------------~~~~l~~h~~~V~~--~s~d~~~l~sgs~-dg~I~iwd~~t 912 (1178)
-.+.-|+.|+..| |.+|..+..... .+....|| ..|++ +++||..+++++. |..|.|||..+
T Consensus 151 -lsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdt 227 (445)
T KOG2139|consen 151 -LSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDT 227 (445)
T ss_pred -CCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCC
Confidence 4466888888776 999986632111 11222344 45664 5899999998875 57899999999
Q ss_pred CcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCC-eEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 001042 913 SQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTD-TCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANI 990 (1178)
Q Consensus 913 ~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~-~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~l 990 (1178)
+..+.-.....+.++-+.|+ +++.+++++-|+..++|+.... ....-. ...+.|...+|+|+|+.|+.+.. |.-.+
T Consensus 228 g~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~-lgsgrvqtacWspcGsfLLf~~s-gsp~l 305 (445)
T KOG2139|consen 228 GQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWI-LGSGRVQTACWSPCGSFLLFACS-GSPRL 305 (445)
T ss_pred CCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceeccee-ccCCceeeeeecCCCCEEEEEEc-CCceE
Confidence 98876655567789999999 8999999999999999965433 333322 33458999999999998776653 23334
Q ss_pred EECCCCceEEEEecCCccEEEEEEcCC---EEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCC
Q 001042 991 WDIRAGRQMHKFLGHTKWIRSIRMDRD---TVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSD 1067 (1178)
Q Consensus 991 wD~~~~~~~~~~~~~~~~v~~l~~~~~---~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~D 1067 (1178)
|.+ .|+++ ..-.++.....-+-|+..-....--.--.+++.+++|+|.|.+|++.-..
T Consensus 306 ysl-------------------~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg 366 (445)
T KOG2139|consen 306 YSL-------------------TFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG 366 (445)
T ss_pred EEE-------------------eecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence 433 23221 00012222223333432111100001124678999999999999987544
Q ss_pred C--------cEEEEECCCCceEEE---EEecccCCcEEEEe---cCCCEEEEEeCCCcEEEEEcC
Q 001042 1068 G--------LLRFWENDDGGIKCV---KNVTIHSSAILSIN---AGDHWLGIGAADNSMSLFHRP 1118 (1178)
Q Consensus 1068 g--------~I~iwd~~~~~~~~~---~~~~~h~~~i~~is---~dg~~Lasgs~Dg~I~iwd~~ 1118 (1178)
+ .|.+||....-.... ....+......+++ .++.+|.++=..|.+.-|++.
T Consensus 367 ~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 367 QSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred CchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 3 366777665421111 12223333445554 367777777777888877764
No 231
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.37 E-value=3.8e-11 Score=133.96 Aligned_cols=232 Identities=15% Similarity=0.195 Sum_probs=162.9
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCCcee-----eEeecccccceEEE-----ecCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 001042 849 EDAGFFISGSTDCLVKIWDPSLRGSEL-----RATLKGHTRTVRAI-----NSDRGKVVSGSDDQSVLVWDKQTSQLLEE 918 (1178)
Q Consensus 849 ~d~~~Lasgs~Dg~I~iWd~~~~~~~~-----~~~l~~h~~~V~~~-----s~d~~~l~sgs~dg~I~iwd~~t~~~~~~ 918 (1178)
-.|+.|+..-.+ .+.+|+... +... ...+.+-.....++ .+.+--++.|-.-|.+.+.|....+..+.
T Consensus 133 ~~gd~lcFnvg~-~lyv~~~~g-~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~skl 210 (636)
T KOG2394|consen 133 GKGDRLCFNVGR-ELYVYSYRG-AADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINFEVSKL 210 (636)
T ss_pred CCCCEEEEecCC-eEEEEEccC-cchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchhhHHHHh
Confidence 566776655433 588888652 1111 12233333333344 36677788888889999998765322221
Q ss_pred e----cCCCCceEEEEEe--CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEE--EEEEeCCCCEEEEEeCCCeEEE
Q 001042 919 L----KGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVL--CMEYDDSTGILAAGGRDAVANI 990 (1178)
Q Consensus 919 l----~~h~~~V~~l~~~--~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~--~l~~sp~~~~l~sgs~dg~I~l 990 (1178)
+ ......|+|+.|- ++..++++-.+|.+.+||..- ....+ +-...+++..+.....-+.
T Consensus 211 fne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~----------~~~~t~p~~~~~k~~~~f~i~t~ksk--- 277 (636)
T KOG2394|consen 211 FNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI----------VCGATAPSYQALKDGDQFAILTSKSK--- 277 (636)
T ss_pred hhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccc----------cccCCCCcccccCCCCeeEEeeeecc---
Confidence 1 1234789999998 567888899999999998721 11111 1222345555554432211
Q ss_pred EECCCCceEEEEecCCccEEEEEE--cCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCC
Q 001042 991 WDIRAGRQMHKFLGHTKWIRSIRM--DRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDG 1068 (1178)
Q Consensus 991 wD~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg 1068 (1178)
.+..++..+.-..+.|..++| ++.+||+.+.||.+||+|..+.+.+..++..-+...|++|||||++|++|+.|.
T Consensus 278 ---~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDD 354 (636)
T KOG2394|consen 278 ---KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDD 354 (636)
T ss_pred ---ccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcc
Confidence 122455555555668888888 556999999999999999999988888888888999999999999999999999
Q ss_pred cEEEEECCCCceEEEEEecccCCcEEEEecCC
Q 001042 1069 LLRFWENDDGGIKCVKNVTIHSSAILSINAGD 1100 (1178)
Q Consensus 1069 ~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg 1100 (1178)
.|.||.+..+ +.+..-.+|..+|..+..|.
T Consensus 355 LVtVwSf~er--RVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 355 LVTVWSFEER--RVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred eEEEEEeccc--eEEEeccccccceeeEeecc
Confidence 9999999988 78888899999999887775
No 232
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.37 E-value=1.9e-11 Score=136.36 Aligned_cols=164 Identities=16% Similarity=0.348 Sum_probs=125.8
Q ss_pred cceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEEeCCCcEEE
Q 001042 828 GAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLV 907 (1178)
Q Consensus 828 ~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sgs~dg~I~i 907 (1178)
..|+|+.|.| .+...++.+-.+|.+.++|.. ...+-+.+-....+++..+.....-+.
T Consensus 220 tsvT~ikWvp-----------g~~~~Fl~a~~sGnlyly~~~--------~~~~~t~p~~~~~k~~~~f~i~t~ksk--- 277 (636)
T KOG2394|consen 220 SSVTCIKWVP-----------GSDSLFLVAHASGNLYLYDKE--------IVCGATAPSYQALKDGDQFAILTSKSK--- 277 (636)
T ss_pred cceEEEEEEe-----------CCCceEEEEEecCceEEeecc--------ccccCCCCcccccCCCCeeEEeeeecc---
Confidence 6788888885 455667777788999999842 111122222233455555554432211
Q ss_pred EECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCC
Q 001042 908 WDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDA 986 (1178)
Q Consensus 908 wd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg 986 (1178)
.+..++..+.--.+.|...+|+ ++.++++.+.||.++|+|..+.+.+..++..-+...|++|||||++|++|+.|.
T Consensus 278 ---~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDD 354 (636)
T KOG2394|consen 278 ---KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDD 354 (636)
T ss_pred ---ccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcc
Confidence 1224444444455688999999 899999999999999999999888877777778899999999999999999999
Q ss_pred eEEEEECCCCceEEEEecCCccEEEEEEcC
Q 001042 987 VANIWDIRAGRQMHKFLGHTKWIRSIRMDR 1016 (1178)
Q Consensus 987 ~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~ 1016 (1178)
.|.||.+...+.+..-++|..+|..++||+
T Consensus 355 LVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 355 LVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred eEEEEEeccceEEEeccccccceeeEeecc
Confidence 999999999999999999999999999997
No 233
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=4.5e-12 Score=140.95 Aligned_cols=161 Identities=20% Similarity=0.382 Sum_probs=130.3
Q ss_pred EEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEe-cCCCCCEEEEEEeC--CCCEEEEEeCCCeEEEE
Q 001042 916 LEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATV-GRCSSAVLCMEYDD--STGILAAGGRDAVANIW 991 (1178)
Q Consensus 916 ~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~-~~~~~~I~~l~~sp--~~~~l~sgs~dg~I~lw 991 (1178)
.+.+.||++.|+|+.|+ +|..|++|+.|-.+.|||.-..+.+..+ .+|...|.++.|-| +.+.+++|..|..|+++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 35788999999999999 8999999999999999999888877766 47899999999998 56789999999999999
Q ss_pred ECCCC----------ceEEEEecCCccEEEEEE---cCCEEEEEeCCCcEEEEEcCCCe-eeeE---------eccCCCc
Q 001042 992 DIRAG----------RQMHKFLGHTKWIRSIRM---DRDTVITGSDDWTARMWSISRGT-CDAV---------LACHAGP 1048 (1178)
Q Consensus 992 D~~~~----------~~~~~~~~~~~~v~~l~~---~~~~l~sgs~dg~I~iwd~~~~~-~~~~---------~~~h~~~ 1048 (1178)
|+... .....+..|...|..++. .|+.+.++++||+++-+|++... +... +...--.
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie 202 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE 202 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence 99842 234556678888888887 45699999999999999998632 1111 1111234
Q ss_pred EEEEEEecCC-CEEEEEeCCCcEEEEECC
Q 001042 1049 VQCVEYSSSD-RGIITGSSDGLLRFWEND 1076 (1178)
Q Consensus 1049 I~~l~~spdg-~~L~sgs~Dg~I~iwd~~ 1076 (1178)
..++..+|.. .+|+.|+.|-..++||.+
T Consensus 203 lk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 203 LKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred eeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 6788899875 568999999999999964
No 234
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.37 E-value=1.5e-12 Score=142.60 Aligned_cols=266 Identities=16% Similarity=0.242 Sum_probs=205.9
Q ss_pred eEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceecccccc
Q 001042 771 WVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDR 848 (1178)
Q Consensus 771 i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s 848 (1178)
-..+.|+.+|+.++.|+.. +-..|+.++.. ...+ .-...|.++.|.
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L-------------------~~Ei-~v~Etv~Dv~~L------------ 179 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKL-------------------HFEI-NVMETVRDVTFL------------ 179 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeeccccee-------------------eeee-ehhhhhhhhhhh------------
Confidence 3567899999999999988 88889887762 2222 234568888887
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceE-EEecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceE
Q 001042 849 EDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR-AINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVS 927 (1178)
Q Consensus 849 ~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~-~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~ 927 (1178)
.+.+++|++- ...+.|||-. +.+ .+.+..|...-. .|-|..-+|++++..|.++--|+.+|+.+..+....+.+.
T Consensus 180 Hneq~~AVAQ-K~y~yvYD~~--GtE-lHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~ 255 (545)
T KOG1272|consen 180 HNEQFFAVAQ-KKYVYVYDNN--GTE-LHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTD 255 (545)
T ss_pred cchHHHHhhh-hceEEEecCC--CcE-EeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccc
Confidence 6777777776 4579999933 444 455665543322 5678888899999999999999999999999988888888
Q ss_pred EEEEeC-CCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCC
Q 001042 928 CVRMLS-GERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHT 1006 (1178)
Q Consensus 928 ~l~~~~-~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~ 1006 (1178)
.++-++ +..+-+|..+|+|.+|.....+++..+-.|.++|.+++++++|+++++.+.|..++|||+++...+.++.. .
T Consensus 256 vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p 334 (545)
T KOG1272|consen 256 VMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-P 334 (545)
T ss_pred hhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-C
Confidence 888875 44566899999999999999999888889999999999999999999999999999999999888877765 5
Q ss_pred ccEEEEEEcCCEEEEEeCCCcEEEEEc-CCC--eeeeEeccC--CCcEEEEEEecCCCEEEEEeCCCcEEEE
Q 001042 1007 KWIRSIRMDRDTVITGSDDWTARMWSI-SRG--TCDAVLACH--AGPVQCVEYSSSDRGIITGSSDGLLRFW 1073 (1178)
Q Consensus 1007 ~~v~~l~~~~~~l~sgs~dg~I~iwd~-~~~--~~~~~~~~h--~~~I~~l~~spdg~~L~sgs~Dg~I~iw 1073 (1178)
-....++++..-+++.+....|.||.- -.+ .....+..| .++|..+.|.|-...|-.|...|.-.+.
T Consensus 335 ~~a~~ls~SqkglLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsil 406 (545)
T KOG1272|consen 335 HPASNLSLSQKGLLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSIL 406 (545)
T ss_pred CCccccccccccceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEe
Confidence 567788888776777777778999952 221 221222222 4589999999988877777666644443
No 235
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.35 E-value=5.3e-11 Score=128.61 Aligned_cols=242 Identities=13% Similarity=0.145 Sum_probs=181.6
Q ss_pred cccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCcee----eEeecccccceEEEecCCCEEEEEeC
Q 001042 826 HAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSEL----RATLKGHTRTVRAINSDRGKVVSGSD 901 (1178)
Q Consensus 826 H~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~----~~~l~~h~~~V~~~s~d~~~l~sgs~ 901 (1178)
-...|++++|.. .+....+...+.|..+....+....... ..........|..+...+..|++|-.
T Consensus 54 ~~~ris~l~~~~----------d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~ 123 (412)
T KOG3881|consen 54 ELDRISSLLFGV----------DGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVS 123 (412)
T ss_pred hhhhhhhheeec----------CCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEEEec
Confidence 455678888852 2445566666567677776654211111 11344556677777777778999999
Q ss_pred CCcEEEEECCCCc----EEEEecCCCCceEEEEEe--CCCeEEEEeCC--CeEEEEeCCCCeEEEEecCC---------C
Q 001042 902 DQSVLVWDKQTSQ----LLEELKGHDAQVSCVRML--SGERVLTASHD--GTVKMWDVRTDTCVATVGRC---------S 964 (1178)
Q Consensus 902 dg~I~iwd~~t~~----~~~~l~~h~~~V~~l~~~--~~~~l~sgs~d--g~V~iwd~~~~~~~~~~~~~---------~ 964 (1178)
+|.+.+|..+.+. .+..+..+ ..+..+.-. ....+++|+.. ..+.+||+.+.+.+..-+.. .
T Consensus 124 sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVP 202 (412)
T KOG3881|consen 124 SGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVP 202 (412)
T ss_pred CCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceee
Confidence 9999999988543 22233322 445555544 34567779988 88999999988666554322 2
Q ss_pred CCEEEEEEeCC--CCEEEEEeCCCeEEEEECCCC-ceEEEEecCCccEEEEEE--cCCEEEEEeCCCcEEEEEcCCCeee
Q 001042 965 SAVLCMEYDDS--TGILAAGGRDAVANIWDIRAG-RQMHKFLGHTKWIRSIRM--DRDTVITGSDDWTARMWSISRGTCD 1039 (1178)
Q Consensus 965 ~~I~~l~~sp~--~~~l~sgs~dg~I~lwD~~~~-~~~~~~~~~~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~ 1039 (1178)
-.++++.|-+. ...+++++.-+.+++||.+.+ +++..+.-...+++++.. +++.+++|...|.+..+|++.++..
T Consensus 203 vW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~ 282 (412)
T KOG3881|consen 203 VWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLL 282 (412)
T ss_pred eeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceee
Confidence 24678888887 889999999999999999976 467777777788888877 6779999999999999999999887
Q ss_pred eE-eccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 001042 1040 AV-LACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDG 1078 (1178)
Q Consensus 1040 ~~-~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~ 1078 (1178)
.. +.+..+.|+++..+|.+++++++|-|..|||+|+.+.
T Consensus 283 g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 283 GCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred ccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence 77 8889999999999999999999999999999999985
No 236
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=9.1e-10 Score=124.38 Aligned_cols=303 Identities=11% Similarity=0.121 Sum_probs=193.1
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEE-----eC-----CCcEEEEECCCCcEEEE
Q 001042 849 EDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSG-----SD-----DQSVLVWDKQTSQLLEE 918 (1178)
Q Consensus 849 ~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sg-----s~-----dg~I~iwd~~t~~~~~~ 918 (1178)
++|+++|.+. +..++|++..... ..+.... ....-..++|.|.+|.+- .. .-.+.+|+++++.....
T Consensus 44 ~~G~lfA~~~-~~~v~i~~~~~~~-~~lt~~~-~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~ 120 (566)
T KOG2315|consen 44 NNGRLFAYSD-NQVVKVFEIATLK-VVLCVEL-KKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQ 120 (566)
T ss_pred CCCcEEEEEc-CCeEEEEEccCCc-EEEEecc-ceeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhh
Confidence 8888888776 4579999976332 2222222 222223468888888752 11 24577999999665555
Q ss_pred ecCCCCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCC--EEEE-----EeCCCeEEEE
Q 001042 919 LKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTG--ILAA-----GGRDAVANIW 991 (1178)
Q Consensus 919 l~~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~--~l~s-----gs~dg~I~lw 991 (1178)
+......-++..|+.++.+++--..+.+.+|+..+.+.+.. .-+...|..+.+||.+. .+|+ +|.-+.+++|
T Consensus 121 ~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~ 199 (566)
T KOG2315|consen 121 IQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIY 199 (566)
T ss_pred eehhhhcCcccccccchhhhhhhhcceEEEEecCCccceee-eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEe
Confidence 54433333788999777777666678899999877433222 23567888999998643 3333 2455679999
Q ss_pred ECCCCceEEEEe---cCCccEEEEEEcCC---E--EEEEeC---------CCcEEEEEcCCCeeeeEeccCCCcEEEEEE
Q 001042 992 DIRAGRQMHKFL---GHTKWIRSIRMDRD---T--VITGSD---------DWTARMWSISRGTCDAVLACHAGPVQCVEY 1054 (1178)
Q Consensus 992 D~~~~~~~~~~~---~~~~~v~~l~~~~~---~--l~sgs~---------dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~ 1054 (1178)
.......-.... -....-..+.|+.. . |++..- +.++++.++....+...+. ..++|.++.|
T Consensus 200 ~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W 278 (566)
T KOG2315|consen 200 KYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTW 278 (566)
T ss_pred ccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEE
Confidence 876322111110 01111223455422 2 222222 3468888887444444444 5789999999
Q ss_pred ecCCCEEE--EEeCCCcEEEEECCCCceEEEEEecccCCcEEEEecCCCEEEEEeCC---CcEEEEEcCCCccccccCCC
Q 001042 1055 SSSDRGII--TGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSINAGDHWLGIGAAD---NSMSLFHRPQERLGGFSGTG 1129 (1178)
Q Consensus 1055 spdg~~L~--sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~Lasgs~D---g~I~iwd~~~~~~~~~~~~g 1129 (1178)
+|+|+-++ .|-.-.++.|+|++. ..+..+........-++|.|++++.++-+ |.|.+||+.+.
T Consensus 279 ~~s~~EF~VvyGfMPAkvtifnlr~---~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~--------- 346 (566)
T KOG2315|consen 279 SPSGREFAVVYGFMPAKVTIFNLRG---KPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR--------- 346 (566)
T ss_pred CCCCCEEEEEEecccceEEEEcCCC---CEeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccch---------
Confidence 99997754 455677899999875 45555554444445569999999887764 88999999854
Q ss_pred CCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeC------CCcEEEEECCC
Q 001042 1130 SKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGR------NGLLRLWEATI 1176 (1178)
Q Consensus 1130 ~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~------Dg~V~IWdv~t 1176 (1178)
+++..+..- .-+-+.|+|||++++|++. |..++||+.+.
T Consensus 347 ------K~i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 347 ------KLIAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred ------hhccccccC--CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 233333222 2456789999999999864 78899999864
No 237
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=1.4e-10 Score=130.24 Aligned_cols=273 Identities=13% Similarity=0.212 Sum_probs=194.1
Q ss_pred ccccceEEEEeeeccceeccccccCCCCEE-EEEeCCCcEEEEcCCCCCceeeEeeccccc-ceEE---EecCCCEEEEE
Q 001042 825 GHAGAITALHCVTKREVWDLVGDREDAGFF-ISGSTDCLVKIWDPSLRGSELRATLKGHTR-TVRA---INSDRGKVVSG 899 (1178)
Q Consensus 825 gH~~~V~~l~fs~~~~~~~~~~~s~d~~~L-asgs~Dg~I~iWd~~~~~~~~~~~l~~h~~-~V~~---~s~d~~~l~sg 899 (1178)
+|...-+.|..+ |||+|+ |||..--.|++||+..-. ..+..|.. .+.. ++-|-..++.-
T Consensus 49 e~p~ast~ik~s------------~DGqY~lAtG~YKP~ikvydlanLS----LKFERhlDae~V~feiLsDD~SK~v~L 112 (703)
T KOG2321|consen 49 EMPTASTRIKVS------------PDGQYLLATGTYKPQIKVYDLANLS----LKFERHLDAEVVDFEILSDDYSKSVFL 112 (703)
T ss_pred CCccccceeEec------------CCCcEEEEecccCCceEEEEcccce----eeeeecccccceeEEEeccchhhheEe
Confidence 477777888877 899986 566677899999976222 23333422 2332 35666667777
Q ss_pred eCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCE
Q 001042 900 SDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGI 978 (1178)
Q Consensus 900 s~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~ 978 (1178)
..|.+|.+.... |.... ++ -...-.+++++ ...-++.++....|+-+++..|..+..+....+.++++..++-..+
T Consensus 113 ~~DR~IefHak~-G~hy~-~R-IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgL 189 (703)
T KOG2321|consen 113 QNDRTIEFHAKY-GRHYR-TR-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGL 189 (703)
T ss_pred ecCceeeehhhc-Ceeee-ee-cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccce
Confidence 777777664422 22111 11 11223456666 4444666677778999999999999888888899999999999999
Q ss_pred EEEEeCCCeEEEEECCCCceEEEEec------CCc-----cEEEEEEcC--CEEEEEeCCCcEEEEEcCCCeeeeEec-c
Q 001042 979 LAAGGRDAVANIWDIRAGRQMHKFLG------HTK-----WIRSIRMDR--DTVITGSDDWTARMWSISRGTCDAVLA-C 1044 (1178)
Q Consensus 979 l~sgs~dg~I~lwD~~~~~~~~~~~~------~~~-----~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~-~ 1044 (1178)
|++|+.+|.|..||.++...+..+.. |.+ .|++++|+. -.+++|+.+|.|.|||+++.+++..-. +
T Consensus 190 la~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~ 269 (703)
T KOG2321|consen 190 LACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHG 269 (703)
T ss_pred EEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccC
Confidence 99999999999999998876665532 222 499999955 389999999999999999988765543 3
Q ss_pred CCCcEEEEEEecC--CCEEEEEeCCCcEEEEECCCCceEEEEEecc-cCCcEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 001042 1045 HAGPVQCVEYSSS--DRGIITGSSDGLLRFWENDDGGIKCVKNVTI-HSSAILSINAGDHWLGIGAADNSMSLFHRPQ 1119 (1178)
Q Consensus 1045 h~~~I~~l~~spd--g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~-h~~~i~~is~dg~~Lasgs~Dg~I~iwd~~~ 1119 (1178)
..-+|..+.|.+. ++.+++. ....++|||-.+|+ ....+.. +.-.-.|.-|++.++.++-.++.+..|=++.
T Consensus 270 ~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk--~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 270 YELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGK--PMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred CccceeeecccccCCCceEEec-chHHhhhcccccCC--ceeeccccCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence 3457899999765 4556655 46679999999984 3333322 2222345568999999999999998888763
No 238
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.35 E-value=3.6e-11 Score=127.62 Aligned_cols=335 Identities=15% Similarity=0.233 Sum_probs=217.1
Q ss_pred ceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEE--EecCCCEE
Q 001042 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKV 896 (1178)
Q Consensus 819 ~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~--~s~d~~~l 896 (1178)
.++.++||.+.|++...- |-..-+++.+.|.++|||--...+............++++ ...+...|
T Consensus 16 ll~~~eG~~d~vn~~~l~------------~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L 83 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILI------------PKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRL 83 (404)
T ss_pred hhhhhcCchhhhhhheec------------cCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEE
Confidence 567889999999987766 5667789999999999996432222222222223344444 46778889
Q ss_pred EEEeCCCcEEEEECC----CCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEE
Q 001042 897 VSGSDDQSVLVWDKQ----TSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCME 971 (1178)
Q Consensus 897 ~sgs~dg~I~iwd~~----t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~ 971 (1178)
++|-..|++.-+.+. .....+....|...+..+-|+ +...+++.+.|..+.---.+.+..+..+.- ...-+++.
T Consensus 84 ~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~ 162 (404)
T KOG1409|consen 84 YVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQ 162 (404)
T ss_pred EEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCc
Confidence 999999999888653 345566677899999999999 788899999998765444455543322211 01111111
Q ss_pred EeCCCCEEEEEeCCCeEEEEEC--CCCceEEEEecCCccEEEEEEcCC--EEEEEeCCCcEEEEEcCCCe-eeeEeccCC
Q 001042 972 YDDSTGILAAGGRDAVANIWDI--RAGRQMHKFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRGT-CDAVLACHA 1046 (1178)
Q Consensus 972 ~sp~~~~l~sgs~dg~I~lwD~--~~~~~~~~~~~~~~~v~~l~~~~~--~l~sgs~dg~I~iwd~~~~~-~~~~~~~h~ 1046 (1178)
++-. +...|...|.|.+-.+ ..-..+.++.+|.+.+.+++|++. .+.+|..|..+.+||+.-++ ....+.+|.
T Consensus 163 ~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~ 240 (404)
T KOG1409|consen 163 FDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHN 240 (404)
T ss_pred eeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccch
Confidence 1111 4555666666655544 345668889999999999999764 89999999999999997554 345677899
Q ss_pred CcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEec---------------------------ccC----CcEEE
Q 001042 1047 GPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVT---------------------------IHS----SAILS 1095 (1178)
Q Consensus 1047 ~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~---------------------------~h~----~~i~~ 1095 (1178)
..|..+..-+--+.+.+++.||.|.+|+.+....+...-+. -|. +...+
T Consensus 241 ~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc 320 (404)
T KOG1409|consen 241 DKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVC 320 (404)
T ss_pred hhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcC
Confidence 99999998888899999999999999998754211110000 000 00011
Q ss_pred E--ecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001042 1096 I--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWE 1173 (1178)
Q Consensus 1096 i--s~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWd 1173 (1178)
. +.+.....+-+..-.+|+.|.--.++..... ..+..+..-...|+++.+..+-.+|+|+|.|..|+|||
T Consensus 321 ~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~--------t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd 392 (404)
T KOG1409|consen 321 GKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEER--------TPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWD 392 (404)
T ss_pred cccccCccccccccceeEEEEecccchhhhcCCC--------CccccccccccceeEEEhhhhccceeecCCceEEEEEe
Confidence 1 1111112222233445555532211110000 12233322334588999999999999999999999999
Q ss_pred CCC
Q 001042 1174 ATI 1176 (1178)
Q Consensus 1174 v~t 1176 (1178)
+..
T Consensus 393 ~~~ 395 (404)
T KOG1409|consen 393 VRS 395 (404)
T ss_pred chh
Confidence 864
No 239
>PF03455 dDENN: dDENN domain; InterPro: IPR005112 This region is always found associated with IPR001194 from INTERPRO. It is predicted to form a globular domain that is completely alpha helical []. Although not statistically supported it has been suggested that this domain may be similar to members of the Rho/Rac/Cdc42 GEF family [].; PDB: 3TW8_A.
Probab=99.30 E-value=1e-12 Score=112.59 Aligned_cols=65 Identities=35% Similarity=0.710 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHHHHHHHhhHHhccccCCc---cCcChHHHhcccccCCCCCCchHHHHHHHHhhHHHHHHcc
Q 001042 364 HDLQLRFIFLKFLASILGGYRNFIENTGT---QVFNAQAFLKKRSRSTNQPPDPMITQFLDSQGFLDYLERG 432 (1178)
Q Consensus 364 ~~~~ir~~Fl~~~~~ll~~y~~~l~~~~~---~~F~~~~Fl~~~~~~~~~~~~~F~~~f~~tq~F~~Fie~~ 432 (1178)
+|.+||++|+++|+.||++|++|+..... ..||+++|+++++.. .++|++.|++||||+.|||+|
T Consensus 1 ~d~~Ir~~Fl~~f~~ll~~Yr~~~~~~~~~~~~~F~~~~Fl~~~~~~----~~~Fl~~f~~TQ~F~~Fi~~R 68 (68)
T PF03455_consen 1 LDDQIREAFLRFFVSLLGNYREYLIYDRQSPRVIFDKEAFLKSRPKE----SRPFLKAFLETQMFEQFIEER 68 (68)
T ss_dssp --THHHHHHHHHHHHHHGGGGGG-------------HHHHS--SSHH----HHHHHHHHTT-HHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCceeccHHHHhcCChh----HhHHHHHHHHHHhHHHHHhcC
Confidence 36789999999999999999999987643 489999999997766 679999999999999999876
No 240
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.30 E-value=1.1e-10 Score=122.87 Aligned_cols=302 Identities=16% Similarity=0.157 Sum_probs=199.1
Q ss_pred ccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceE--EEecCCCEEE-EEeCCCcEEEEECCCCcEEEEecC
Q 001042 845 VGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKVV-SGSDDQSVLVWDKQTSQLLEELKG 921 (1178)
Q Consensus 845 ~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~--~~s~d~~~l~-sgs~dg~I~iwd~~t~~~~~~l~~ 921 (1178)
..|||+|+++|+++.- .+.|-|.+ ..++.+.+..- ..|. -++.|..+++ ....|+.|.+|++...+-...+..
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~--tlq~~qlf~cl-dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIde 89 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSE--TLQLHQLFLCL-DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDE 89 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccc--hhhHHHHHHHH-HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEecc
Confidence 3566999999999876 67777754 33332222221 1222 3466666655 456788999999999888888988
Q ss_pred CCCceEEEEEe-CCCe-EEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCe---EEEEECCCC
Q 001042 922 HDAQVSCVRML-SGER-VLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAV---ANIWDIRAG 996 (1178)
Q Consensus 922 h~~~V~~l~~~-~~~~-l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~---I~lwD~~~~ 996 (1178)
....+..++|+ +|.. +.+...|-.|.+|.+.+.+.... ...+..+..++|+|||++.+..+.... +.+...+..
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W 168 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAW 168 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHH
Confidence 89999999999 5644 55677799999999988776543 344556799999999999988875321 222222223
Q ss_pred ceEEEEecCCccEEEEEEcCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 001042 997 RQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWEND 1076 (1178)
Q Consensus 997 ~~~~~~~~~~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~ 1076 (1178)
..++.+...+-..+.+.|+++ +..+.+||---.-.+..+. ..-.+..++|+|.+++|+.|+.|+.+|+.+--
T Consensus 169 ~ll~~f~~dT~DltgieWsPd-------g~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~ 240 (447)
T KOG4497|consen 169 ILLKEFKLDTIDLTGIEWSPD-------GNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHF 240 (447)
T ss_pred HHHHhcCCCcccccCceECCC-------CcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhcee
Confidence 345555556666778888664 4456677743222222222 23468899999999999999999998875422
Q ss_pred CCc----------------------------------------------------------eEEEEEec--------ccC
Q 001042 1077 DGG----------------------------------------------------------IKCVKNVT--------IHS 1090 (1178)
Q Consensus 1077 ~~~----------------------------------------------------------~~~~~~~~--------~h~ 1090 (1178)
+-+ ...+..++ .-.
T Consensus 241 tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g 320 (447)
T KOG4497|consen 241 TWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCG 320 (447)
T ss_pred eeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccc
Confidence 100 00000000 001
Q ss_pred CcEEEEecCCCEEEEEeC--CCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCc
Q 001042 1091 SAILSINAGDHWLGIGAA--DNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGL 1168 (1178)
Q Consensus 1091 ~~i~~is~dg~~Lasgs~--Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~ 1168 (1178)
....++++|..++++-.+ -+.+.+||++..++.+.. ....+|.+..|+|....|+.+.....
T Consensus 321 ~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL----------------iQk~piraf~WdP~~prL~vctg~sr 384 (447)
T KOG4497|consen 321 AGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL----------------IQKHPIRAFEWDPGRPRLVVCTGKSR 384 (447)
T ss_pred cceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh----------------hhccceeEEEeCCCCceEEEEcCCce
Confidence 122556788889888654 367999999865432211 22346999999999999988877778
Q ss_pred EEEEECC
Q 001042 1169 LRLWEAT 1175 (1178)
Q Consensus 1169 V~IWdv~ 1175 (1178)
+.+|...
T Consensus 385 LY~W~ps 391 (447)
T KOG4497|consen 385 LYFWAPS 391 (447)
T ss_pred EEEEcCC
Confidence 8888764
No 241
>smart00801 dDENN Domain always found downstream of DENN domain, found in a variety of signalling proteins. The dDENN domain is part of the tripartite DENN domain. It is always found downstream of the DENN domain itself, which is found in a variety of signalling proteins involved in Rab-mediated processes or regulation of MAPKs signalling pathways. The DENN domain is always encircled on both sides by more divergent domains, called uDENN (for upstream DENN) and dDENN (for downstream DENN). The function of the DENN domain remains to date unclear, although it appears to represent a good candidate for a GTP/GDP exchange activity.
Probab=99.29 E-value=3.8e-12 Score=109.45 Aligned_cols=64 Identities=34% Similarity=0.758 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHHHHHhhHHhcccc-----CCccCcChHHHhcccccCCCCCCchHHHHHHHHhhHHHHHHcc
Q 001042 365 DLQLRFIFLKFLASILGGYRNFIEN-----TGTQVFNAQAFLKKRSRSTNQPPDPMITQFLDSQGFLDYLERG 432 (1178)
Q Consensus 365 ~~~ir~~Fl~~~~~ll~~y~~~l~~-----~~~~~F~~~~Fl~~~~~~~~~~~~~F~~~f~~tq~F~~Fie~~ 432 (1178)
+.+||+||+++|+.+|+||++|+.. .+...||+++|+++++.+ .++|++.|++||||..||++|
T Consensus 1 ~~~Ir~aFl~~f~~l~~~Y~~~l~~~~~~~~~~~~F~~~~Fl~~~~~~----~~~Fl~~~~~TQ~F~~Fi~~r 69 (69)
T smart00801 1 NDEIREAFLRFFVNLFGGYRNFLRELRKEPGPVITFDKESFLKSRPSS----ERPFLSKFLETQMFSQFIEER 69 (69)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceeCHHHHHHhCCch----hhHHHHHHHHHhhHHHHHhcC
Confidence 3579999999999999999999973 357789999999998877 569999999999999999875
No 242
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.28 E-value=1.8e-08 Score=111.01 Aligned_cols=215 Identities=15% Similarity=0.236 Sum_probs=148.6
Q ss_pred CCcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEecC------CC--C---c---
Q 001042 860 DCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKG------HD--A---Q--- 925 (1178)
Q Consensus 860 Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~------h~--~---~--- 925 (1178)
||.=.+|.++..+..+.+...-|.--....+.||+.++... .|.|.++|.++.+..+.--+ .. . +
T Consensus 245 eG~GnlYSvdldGkDlrrHTnFtdYY~R~~nsDGkrIvFq~-~GdIylydP~td~lekldI~lpl~rk~k~~k~~~psky 323 (668)
T COG4946 245 EGVGNLYSVDLDGKDLRRHTNFTDYYPRNANSDGKRIVFQN-AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKY 323 (668)
T ss_pred cCccceEEeccCCchhhhcCCchhccccccCCCCcEEEEec-CCcEEEeCCCcCcceeeecCCccccccccccccCHHHh
Confidence 44444444444444443333333333445678998877654 47899999887654321111 00 0 1
Q ss_pred eEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCC-eEEEEECCCCceEEEEec
Q 001042 926 VSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDA-VANIWDIRAGRQMHKFLG 1004 (1178)
Q Consensus 926 V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg-~I~lwD~~~~~~~~~~~~ 1004 (1178)
....+..+|++++..|. |...+.+...+-.++. ++...|.-..+..+++-++.|..|| .+-++|.++++ +..+..
T Consensus 324 ledfa~~~Gd~ia~VSR-GkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~ 399 (668)
T COG4946 324 LEDFAVVNGDYIALVSR-GKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEK 399 (668)
T ss_pred hhhhccCCCcEEEEEec-CcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-EEEeeC
Confidence 11122337888888875 5566666655555443 5566688888888888899999999 89999998775 445556
Q ss_pred CCccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCC----cEEEEECCCC
Q 001042 1005 HTKWIRSIRMD--RDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDG----LLRFWENDDG 1078 (1178)
Q Consensus 1005 ~~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg----~I~iwd~~~~ 1078 (1178)
.-+.|.++..+ +..++++.....+.+.|+.+|+....-+...+-|+..+|||+++++|-+--+| .|+++|+.++
T Consensus 400 ~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 400 DLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred CccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC
Confidence 77888888884 55899999999999999999988766666778899999999999999876555 5889998876
Q ss_pred c
Q 001042 1079 G 1079 (1178)
Q Consensus 1079 ~ 1079 (1178)
+
T Consensus 480 K 480 (668)
T COG4946 480 K 480 (668)
T ss_pred e
Confidence 4
No 243
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=2.5e-09 Score=120.89 Aligned_cols=308 Identities=9% Similarity=0.126 Sum_probs=205.5
Q ss_pred ceEEEEecCCCCcccccccc-eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceecccccc
Q 001042 770 SWVQSMFSREASSRSHSFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDR 848 (1178)
Q Consensus 770 ~i~~~aFSpdg~~las~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s 848 (1178)
+....++|++|+++|.+..+ ++|.+..++. .+.+...- .++++.||
T Consensus 36 ~~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~-------------------~~lt~~~~--~~~~L~fS------------ 82 (566)
T KOG2315|consen 36 PCNVFAYSNNGRLFAYSDNQVVKVFEIATLK-------------------VVLCVELK--KTYDLLFS------------ 82 (566)
T ss_pred cceeEEEcCCCcEEEEEcCCeEEEEEccCCc-------------------EEEEeccc--eeeeeeec------------
Confidence 34556999999999999998 9999988664 12222222 68889888
Q ss_pred CCCCEEEEE-----eC-----CCcEEEEcCCCCCceeeEeec--ccccceEEEecCCCEEEEEeCCCcEEEEECCCCcEE
Q 001042 849 EDAGFFISG-----ST-----DCLVKIWDPSLRGSELRATLK--GHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLL 916 (1178)
Q Consensus 849 ~d~~~Lasg-----s~-----Dg~I~iWd~~~~~~~~~~~l~--~h~~~V~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~ 916 (1178)
|-|.+|.+- .. ...+++|++++ ......+. ...+++..|+.|..+.+- -..+.+.+|+..+.+.+
T Consensus 83 P~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet--~~~~s~~q~k~Q~~W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~ 159 (566)
T KOG2315|consen 83 PKGNYLLTWEPWAIYGPKNASNPNVLVYNVET--GVQRSQIQKKMQNGWVPQFSIDESLAAR-LVSNEVQFYDLGSFKTI 159 (566)
T ss_pred ccccccccccccccccCCCCCCCceeeeeecc--ceehhheehhhhcCcccccccchhhhhh-hhcceEEEEecCCccce
Confidence 667777652 11 23577999874 22222222 223345567777654332 23467999998874433
Q ss_pred EEecCCCCceEEEEEeCC---CeEEE-----EeCCCeEEEEeCCCCeEEEEe---cCCCCCEEEEEEeCCCCEEEE-Ee-
Q 001042 917 EELKGHDAQVSCVRMLSG---ERVLT-----ASHDGTVKMWDVRTDTCVATV---GRCSSAVLCMEYDDSTGILAA-GG- 983 (1178)
Q Consensus 917 ~~l~~h~~~V~~l~~~~~---~~l~s-----gs~dg~V~iwd~~~~~~~~~~---~~~~~~I~~l~~sp~~~~l~s-gs- 983 (1178)
. -+-|...|+.+.++++ ..+++ +|.-+.|++|..........+ .-....-..+.|++-|.-|++ ++
T Consensus 160 ~-~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLast 238 (566)
T KOG2315|consen 160 Q-HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLAST 238 (566)
T ss_pred e-eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEE
Confidence 2 2336778888888854 23332 355678999987632221111 011223345778776653322 22
Q ss_pred ----------CCCeEEEEECCCCceEEEEecCCccEEEEEEcCC----EEEEEeCCCcEEEEEcCCCeeeeEeccCCCcE
Q 001042 984 ----------RDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD----TVITGSDDWTARMWSISRGTCDAVLACHAGPV 1049 (1178)
Q Consensus 984 ----------~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~----~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I 1049 (1178)
...+++++++....+...+ ...++|.++.|+++ -++.|..-..+.|+|++ +..+..+ ..++-
T Consensus 239 dVDktn~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpR 314 (566)
T KOG2315|consen 239 DVDKTNASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPR 314 (566)
T ss_pred eecCCCccccccceEEEEEecCceEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCc
Confidence 2346888888733333333 45789999999654 35556677889999975 5555555 46788
Q ss_pred EEEEEecCCCEEEEEeC---CCcEEEEECCCCceEEEEEecccCCcEEEEecCCCEEEEEeC------CCcEEEEEcCCC
Q 001042 1050 QCVEYSSSDRGIITGSS---DGLLRFWENDDGGIKCVKNVTIHSSAILSINAGDHWLGIGAA------DNSMSLFHRPQE 1120 (1178)
Q Consensus 1050 ~~l~~spdg~~L~sgs~---Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~Lasgs~------Dg~I~iwd~~~~ 1120 (1178)
+++-|+|.|++++.+|- .|.+-+||+.+. +++..+......+..++|||.++++++. |+.++||+....
T Consensus 315 N~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~--K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 315 NTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR--KLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred cceEECCCCCEEEEeecCCCCCceEEEeccch--hhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 89999999999988774 578999999985 7888888888889999999999999875 788999998643
No 244
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.27 E-value=2.7e-09 Score=125.69 Aligned_cols=256 Identities=16% Similarity=0.123 Sum_probs=166.6
Q ss_pred CCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEE-EecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceE-
Q 001042 850 DAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA-INSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVS- 927 (1178)
Q Consensus 850 d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~-~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~- 927 (1178)
++..++.++.+|.+..+|... ++........ ..+.+ ..-.+..++.++.+|.+..||.++|+.+...........
T Consensus 104 ~~~~v~v~~~~g~l~ald~~t--G~~~W~~~~~-~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~ 180 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAED--GKELWRAKLS-SEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTL 180 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCC--CcEeeeeccC-ceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceee
Confidence 467788888899999999762 3332222211 12221 112456788888899999999999999887764332211
Q ss_pred ----EEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCCC----CC---EEEEEEeC--CCCEEEEEeCCCeEEEEECC
Q 001042 928 ----CVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCS----SA---VLCMEYDD--STGILAAGGRDAVANIWDIR 994 (1178)
Q Consensus 928 ----~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~----~~---I~~l~~sp--~~~~l~sgs~dg~I~lwD~~ 994 (1178)
.... .++.++.+..+|.+..+|.++|+.+....... .. ...+.-+| .+..+++++.+|.+..||.+
T Consensus 181 ~~~~sp~~-~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~ 259 (377)
T TIGR03300 181 RGSASPVI-ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLR 259 (377)
T ss_pred cCCCCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECC
Confidence 1112 24577888889999999999998765542110 00 00011111 35578888889999999999
Q ss_pred CCceEEEEecCCccEEEEEEcCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCC-cEEEEEEecCCCEEEEEeCCCcEEEE
Q 001042 995 AGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAG-PVQCVEYSSSDRGIITGSSDGLLRFW 1073 (1178)
Q Consensus 995 ~~~~~~~~~~~~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~-~I~~l~~spdg~~L~sgs~Dg~I~iw 1073 (1178)
+++.+..... .........++.++.++.||.+..+|..+|+.+........ ...+... .+..+++++.+|.|.++
T Consensus 260 tG~~~W~~~~--~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~ 335 (377)
T TIGR03300 260 SGRVLWKRDA--SSYQGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWL 335 (377)
T ss_pred CCcEEEeecc--CCccCceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEE
Confidence 9988776542 22334456778899999999999999999987765532211 2222222 36788999999999999
Q ss_pred ECCCCceEEEEEecccCCcEEEE-ecCCCEEEEEeCCCcEEEE
Q 001042 1074 ENDDGGIKCVKNVTIHSSAILSI-NAGDHWLGIGAADNSMSLF 1115 (1178)
Q Consensus 1074 d~~~~~~~~~~~~~~h~~~i~~i-s~dg~~Lasgs~Dg~I~iw 1115 (1178)
|..+|+ .+.....+...+.+- ...++.|+.++.||.|..|
T Consensus 336 d~~tG~--~~~~~~~~~~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 336 SREDGS--FVARLKTDGSGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred ECCCCC--EEEEEEcCCCccccCCEEECCEEEEEeCCceEEEe
Confidence 999994 444554444332221 2233457888899988765
No 245
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.27 E-value=2.2e-10 Score=123.96 Aligned_cols=237 Identities=12% Similarity=0.156 Sum_probs=167.8
Q ss_pred CCceEEEEEe-CC-Ce-EEEEeCCCeEEEEeCCCCeEEEEe------cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 001042 923 DAQVSCVRML-SG-ER-VLTASHDGTVKMWDVRTDTCVATV------GRCSSAVLCMEYDDSTGILAAGGRDAVANIWDI 993 (1178)
Q Consensus 923 ~~~V~~l~~~-~~-~~-l~sgs~dg~V~iwd~~~~~~~~~~------~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~ 993 (1178)
...+..++|. ++ .. +...+.|..+...++....+.... ......|..++.. ...|++|..+|.+.+|..
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEec
Confidence 3456666665 22 22 333335556666655544433322 2334556666553 345778888999999998
Q ss_pred CCCc----eEEEEecCCccEEEEEE---cCCEEEEEeCC--CcEEEEEcCCCeeeeEeccC---------CCcEEEEEEe
Q 001042 994 RAGR----QMHKFLGHTKWIRSIRM---DRDTVITGSDD--WTARMWSISRGTCDAVLACH---------AGPVQCVEYS 1055 (1178)
Q Consensus 994 ~~~~----~~~~~~~~~~~v~~l~~---~~~~l~sgs~d--g~I~iwd~~~~~~~~~~~~h---------~~~I~~l~~s 1055 (1178)
+.+. .+..+..+ ..+..+.- ++..+++|+.. ..+.+||+...+.+.+-+.- .-+++++.|-
T Consensus 133 k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl 211 (412)
T KOG3881|consen 133 KSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFL 211 (412)
T ss_pred cCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceec
Confidence 8543 22233222 23333333 45688889998 88999999988655443321 2257888998
Q ss_pred cC--CCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE--ecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCC
Q 001042 1056 SS--DRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSK 1131 (1178)
Q Consensus 1056 pd--g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~ 1131 (1178)
+. ...+++++.-+.+++||...+. +++..+.....++.++ .|+|+++.+|..-|.+..||..++++
T Consensus 212 ~g~~~~~fat~T~~hqvR~YDt~~qR-RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl--------- 281 (412)
T KOG3881|consen 212 EGSPNYKFATITRYHQVRLYDTRHQR-RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKL--------- 281 (412)
T ss_pred CCCCCceEEEEecceeEEEecCcccC-cceeEeccccCcceeeeecCCCcEEEEecccchhheecccCcee---------
Confidence 87 7889999999999999999764 6777777777777666 69999999999999999999986532
Q ss_pred ccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001042 1132 MSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATIN 1177 (1178)
Q Consensus 1132 ~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~tg 1177 (1178)
....+.+-.+.|+++..+|.+++||++|-|..|||+|++|.
T Consensus 282 -----~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 282 -----LGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred -----eccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence 12236677889999999999999999999999999999984
No 246
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.27 E-value=2.7e-09 Score=119.11 Aligned_cols=315 Identities=9% Similarity=0.069 Sum_probs=205.7
Q ss_pred cccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEEeCCC--
Q 001042 826 HAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQ-- 903 (1178)
Q Consensus 826 H~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sgs~dg-- 903 (1178)
-.-++..++|| |.|.+|++....| |.+|+-.... ....+......-..++|.+++|.+-+..+
T Consensus 31 ~~~p~~~~~~S------------P~G~~l~~~~~~~-V~~~~g~~~~--~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~ 95 (561)
T COG5354 31 ENWPVAYVSES------------PLGTYLFSEHAAG-VECWGGPSKA--KLVRFRHPDVKYLDFSPNEKYLVTWSREPII 95 (561)
T ss_pred cCcchhheeec------------Ccchheehhhccc-eEEccccchh--heeeeecCCceecccCcccceeeeeccCCcc
Confidence 45567777776 8999999998876 9999855222 33333333333347899999999865433
Q ss_pred -------------cEEEEECCCCcEEEEecCCCCc--eE-EEEEe-CCCeEEEEeCCCeEEEEeCCCCeEE-EEecC-CC
Q 001042 904 -------------SVLVWDKQTSQLLEELKGHDAQ--VS-CVRML-SGERVLTASHDGTVKMWDVRTDTCV-ATVGR-CS 964 (1178)
Q Consensus 904 -------------~I~iwd~~t~~~~~~l~~h~~~--V~-~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~-~~~~~-~~ 964 (1178)
.+.+||..+|..+..+.+...+ .+ -+.|+ ++.+++-. ....++++++ ++... ..+.. ..
T Consensus 96 ~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~ 173 (561)
T COG5354 96 EPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRP 173 (561)
T ss_pred ChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccc
Confidence 4999999999999998876665 55 67788 55554433 4557899997 43321 11111 13
Q ss_pred CCEEEEEEeCCCC--EEEE-----EeCCCeEEEEECCCCceEEEEecCCccEEEEEE--cCCEEEEE-----------eC
Q 001042 965 SAVLCMEYDDSTG--ILAA-----GGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM--DRDTVITG-----------SD 1024 (1178)
Q Consensus 965 ~~I~~l~~sp~~~--~l~s-----gs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg-----------s~ 1024 (1178)
..|....++|.++ .|+. ++..+.+++|.+..+..+.+..-....-..+.| .++++++- ..
T Consensus 174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfg 253 (561)
T COG5354 174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFG 253 (561)
T ss_pred cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceec
Confidence 5688888998643 3443 356788999999877665443222222233444 23332221 12
Q ss_pred CCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEe--CCCcEEEEECCCCceEEEEEecccCCcEEEEecCCCE
Q 001042 1025 DWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGS--SDGLLRFWENDDGGIKCVKNVTIHSSAILSINAGDHW 1102 (1178)
Q Consensus 1025 dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs--~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~ 1102 (1178)
+..++++++....+.... .-.++|...+|.|.++.+++.+ .+..+.++|++.. ....+......-..++|.+++
T Consensus 254 esnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N---l~~~~Pe~~rNT~~fsp~~r~ 329 (561)
T COG5354 254 ESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN---LRFYFPEQKRNTIFFSPHERY 329 (561)
T ss_pred cceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeecccccc---eEEecCCcccccccccCcccE
Confidence 356888888744433332 5688999999999988766544 7888999999864 334444334444566899999
Q ss_pred EEEEeCC---CcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEe------CCCcEEEEE
Q 001042 1103 LGIGAAD---NSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGG------RNGLLRLWE 1173 (1178)
Q Consensus 1103 Lasgs~D---g~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s------~Dg~V~IWd 1173 (1178)
++.++-| |.|.+||..+.- .+...+.+.. .+-+.|+|||+++-++. .|..|+|||
T Consensus 330 il~agF~nl~gni~i~~~~~rf--------------~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~ 393 (561)
T COG5354 330 ILFAGFDNLQGNIEIFDPAGRF--------------KVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWD 393 (561)
T ss_pred EEEecCCccccceEEeccCCce--------------EEEEEeecCC--ceEeeccCCceEEEecCCCcccccCcceEEEE
Confidence 9987765 789999986431 3332333322 34567999999987763 378899999
Q ss_pred CCCC
Q 001042 1174 ATIN 1177 (1178)
Q Consensus 1174 v~tg 1177 (1178)
+...
T Consensus 394 v~g~ 397 (561)
T COG5354 394 VYGA 397 (561)
T ss_pred ecCc
Confidence 8643
No 247
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=9.5e-10 Score=131.64 Aligned_cols=210 Identities=10% Similarity=0.051 Sum_probs=139.9
Q ss_pred CcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeC---CCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCE
Q 001042 903 QSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASH---DGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGI 978 (1178)
Q Consensus 903 g~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~---dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~ 978 (1178)
..|.+||... .....+..+...+.+..|+ +++.++.++. +..|.+||+.+++.... ....+...+.+|+|||+.
T Consensus 184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l-~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 184 YALQVADSDG-YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV-ASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEEECCCC-CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe-ccCCCCccCceECCCCCE
Confidence 4689999864 4445566677889999999 6778887764 34799999988875433 233445567899999998
Q ss_pred EEE-EeCCC--eEEEEECCCCceEEEEecCCccEEEEEEc--CCEEEEEe-CCCc--EEEEEcCCCeeeeEeccCCCcEE
Q 001042 979 LAA-GGRDA--VANIWDIRAGRQMHKFLGHTKWIRSIRMD--RDTVITGS-DDWT--ARMWSISRGTCDAVLACHAGPVQ 1050 (1178)
Q Consensus 979 l~s-gs~dg--~I~lwD~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sgs-~dg~--I~iwd~~~~~~~~~~~~h~~~I~ 1050 (1178)
++. .+.+| .|++||+.+++.. .+..+.......+|+ ++.++.++ .+|. |+++|+.+++... +..+.....
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~ 339 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNA 339 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCcc
Confidence 764 44454 6999999887653 344444445566774 55677665 3444 6667776665432 222334455
Q ss_pred EEEEecCCCEEEEEeCCC---cEEEEECCCCceEEEEEecccCCcEEEEecCCCEEEEEeCC---CcEEEEEcC
Q 001042 1051 CVEYSSSDRGIITGSSDG---LLRFWENDDGGIKCVKNVTIHSSAILSINAGDHWLGIGAAD---NSMSLFHRP 1118 (1178)
Q Consensus 1051 ~l~~spdg~~L~sgs~Dg---~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~Lasgs~D---g~I~iwd~~ 1118 (1178)
..+|+|+|++++..+.++ .|.+||+.+++...+. .++...-.+++|||++++..+.+ +.+.+++..
T Consensus 340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt--~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLT--PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred CEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECC--CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 789999999998765443 5999999888544222 22222234679999988877653 346667764
No 248
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=8.8e-10 Score=131.38 Aligned_cols=229 Identities=13% Similarity=0.089 Sum_probs=154.4
Q ss_pred eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeC---CCcEEEE
Q 001042 790 VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGST---DCLVKIW 866 (1178)
Q Consensus 790 I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~---Dg~I~iW 866 (1178)
|.+||.++.. .+.+..+...+.+.+|| |||+.|+..+. +..|.+|
T Consensus 181 l~~~d~dg~~--------------------~~~lt~~~~~~~~p~wS------------PDG~~la~~s~~~g~~~i~i~ 228 (429)
T PRK03629 181 LRVSDYDGYN--------------------QFVVHRSPQPLMSPAWS------------PDGSKLAYVTFESGRSALVIQ 228 (429)
T ss_pred EEEEcCCCCC--------------------CEEeecCCCceeeeEEc------------CCCCEEEEEEecCCCcEEEEE
Confidence 8888888654 23445567789999998 89999987643 4579999
Q ss_pred cCCCCCceeeEeecccccceEEEecCCCEEEEE-eCCC--cEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeC
Q 001042 867 DPSLRGSELRATLKGHTRTVRAINSDRGKVVSG-SDDQ--SVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASH 942 (1178)
Q Consensus 867 d~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sg-s~dg--~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~ 942 (1178)
|+.......+..+.++... ..|+|||+.|+.. +.+| .|.+||+++++... +..+...+....|+ +++.++.++.
T Consensus 229 dl~~G~~~~l~~~~~~~~~-~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~ 306 (429)
T PRK03629 229 TLANGAVRQVASFPRHNGA-PAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSD 306 (429)
T ss_pred ECCCCCeEEccCCCCCcCC-eEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeC
Confidence 9874333333444454433 4789999988865 4444 58899999887644 44445567888999 6777776665
Q ss_pred C-C--eEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCC---CeEEEEECCCCceEEEEecCCccEEEEEE--
Q 001042 943 D-G--TVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRD---AVANIWDIRAGRQMHKFLGHTKWIRSIRM-- 1014 (1178)
Q Consensus 943 d-g--~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~d---g~I~lwD~~~~~~~~~~~~~~~~v~~l~~-- 1014 (1178)
+ | .|..+|+.+++.. .+...........|+|||+.++..+.+ ..|.+||+.+++... +... .......|
T Consensus 307 ~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~-~~~~~p~~Sp 383 (429)
T PRK03629 307 QAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDT-FLDETPSIAP 383 (429)
T ss_pred CCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCC-CCCCCceECC
Confidence 4 4 4555577766543 333334455678999999999876643 358899998876432 3221 11223445
Q ss_pred cCCEEEEEeCCCc---EEEEEcCCCeeeeEeccCCCcEEEEEEec
Q 001042 1015 DRDTVITGSDDWT---ARMWSISRGTCDAVLACHAGPVQCVEYSS 1056 (1178)
Q Consensus 1015 ~~~~l~sgs~dg~---I~iwd~~~~~~~~~~~~h~~~I~~l~~sp 1056 (1178)
++..++.++.++. +.++++ +|.....+.+|.+.+...+|+|
T Consensus 384 DG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 384 NGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred CCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCC
Confidence 6668888887764 667776 4666677777888889999987
No 249
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=1.6e-09 Score=129.17 Aligned_cols=231 Identities=11% Similarity=0.043 Sum_probs=153.9
Q ss_pred CcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEe---CCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCE
Q 001042 903 QSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTAS---HDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGI 978 (1178)
Q Consensus 903 g~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs---~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~ 978 (1178)
..|.+||.+.... ..+..+...+....|+ +++.++..+ .+..+.+||+.+++..... .....+...+|+|||+.
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~~~~~~~~~SPDG~~ 256 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPRHNGAPAFSPDGSK 256 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCCCCcCCeEECCCCCE
Confidence 3799999875544 4445567789999999 677777554 2457999999888643322 23334557899999998
Q ss_pred EEEE-eCCC--eEEEEECCCCceEEEEecCCccEEEEEEc--CCEEEEEeCC-Cc--EEEEEcCCCeeeeEeccCCCcEE
Q 001042 979 LAAG-GRDA--VANIWDIRAGRQMHKFLGHTKWIRSIRMD--RDTVITGSDD-WT--ARMWSISRGTCDAVLACHAGPVQ 1050 (1178)
Q Consensus 979 l~sg-s~dg--~I~lwD~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sgs~d-g~--I~iwd~~~~~~~~~~~~h~~~I~ 1050 (1178)
|+.. +.+| .|++||+.+++.... ..+...+....|+ ++.++..+.+ |. |+.+|+.+++. ..+..+.....
T Consensus 257 La~~~~~~g~~~I~~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~ 334 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQ 334 (429)
T ss_pred EEEEEcCCCCcEEEEEECCCCCEEEc-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCcc
Confidence 8865 3344 599999988765443 3344456677774 4567666654 44 55556666644 33333444566
Q ss_pred EEEEecCCCEEEEEeCC---CcEEEEECCCCceEEEEEecccCCcEEEEecCCCEEEEEeCCCc---EEEEEcCCCcccc
Q 001042 1051 CVEYSSSDRGIITGSSD---GLLRFWENDDGGIKCVKNVTIHSSAILSINAGDHWLGIGAADNS---MSLFHRPQERLGG 1124 (1178)
Q Consensus 1051 ~l~~spdg~~L~sgs~D---g~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~Lasgs~Dg~---I~iwd~~~~~~~~ 1124 (1178)
...|+|||++++..+.+ ..|.+||+.++....+. ..+...-.+++|||++|+.++.++. +.++++.
T Consensus 335 ~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt--~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~------ 406 (429)
T PRK03629 335 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLT--DTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD------ 406 (429)
T ss_pred CEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeC--CCCCCCCceECCCCCEEEEEEcCCCceEEEEEECC------
Confidence 78999999999876643 35888999888644333 2222333567899999999988765 5666664
Q ss_pred ccCCCCCccceeEeeccCCCcccEEEEEEcC
Q 001042 1125 FSGTGSKMSGWQLYRTPQKTVAVVRCIASDL 1155 (1178)
Q Consensus 1125 ~~~~g~~~~~~~~~~~~~~h~~~V~~lafsp 1155 (1178)
| .....+.+|.+.+...+|+|
T Consensus 407 ----G------~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 407 ----G------RFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred ----C------CCeEECccCCCCcCCcccCC
Confidence 2 22233456777788889987
No 250
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.26 E-value=5.5e-10 Score=129.28 Aligned_cols=371 Identities=11% Similarity=0.063 Sum_probs=238.1
Q ss_pred ceEEEEecCCCCcccccccc-eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceecccccc
Q 001042 770 SWVQSMFSREASSRSHSFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDR 848 (1178)
Q Consensus 770 ~i~~~aFSpdg~~las~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s 848 (1178)
+-.++-|+|.| ++|.|+.. |.+-|..+-+ .++.+.-|...|+.+.|.|.....+..+-+
T Consensus 17 N~~A~Dw~~~G-LiAygshslV~VVDs~s~q-------------------~iqsie~h~s~V~~VrWap~~~p~~llS~~ 76 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGSHSLVSVVDSRSLQ-------------------LIQSIELHQSAVTSVRWAPAPSPRDLLSPS 76 (1062)
T ss_pred cccccccCccc-eEEEecCceEEEEehhhhh-------------------hhhccccCccceeEEEeccCCCchhccCcc
Confidence 34556799988 77888877 9999988777 788899999999999999865544444433
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEE--E--e-cCC-CEEEEEeCCCcEEEEECCCCcEEEEecCC
Q 001042 849 EDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--I--N-SDR-GKVVSGSDDQSVLVWDKQTSQLLEELKGH 922 (1178)
Q Consensus 849 ~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~--~--s-~d~-~~l~sgs~dg~I~iwd~~t~~~~~~l~~h 922 (1178)
...-+||++...|.|.+||.. ....+..+..|..++.. | . .+. ..|++-....++.+|+..+|+........
T Consensus 77 ~~~lliAsaD~~GrIil~d~~--~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys 154 (1062)
T KOG1912|consen 77 SSQLLIASADISGRIILVDFV--LASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYS 154 (1062)
T ss_pred ccceeEEeccccCcEEEEEeh--hhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccC
Confidence 345577888889999999976 34444567777777763 3 2 334 46777777789999999999999888776
Q ss_pred CCceEEEEEe--CCCeEEEEeCCCeEEEEeCCC-------CeEEEEecCCCC------------C-------------EE
Q 001042 923 DAQVSCVRML--SGERVLTASHDGTVKMWDVRT-------DTCVATVGRCSS------------A-------------VL 968 (1178)
Q Consensus 923 ~~~V~~l~~~--~~~~l~sgs~dg~V~iwd~~~-------~~~~~~~~~~~~------------~-------------I~ 968 (1178)
.....|+.+. +...+..-+..|.+-+-+.-. |+..+.-..|.+ . ..
T Consensus 155 ~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a 234 (1062)
T KOG1912|consen 155 HEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCA 234 (1062)
T ss_pred CcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHH
Confidence 7777778776 566666666677776665421 233332222211 0 11
Q ss_pred EEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEE--cC--CEEEEEeCCCcEEEEEcCCCe-------
Q 001042 969 CMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM--DR--DTVITGSDDWTARMWSISRGT------- 1037 (1178)
Q Consensus 969 ~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~--~~--~~l~sgs~dg~I~iwd~~~~~------- 1037 (1178)
.++|+|.-+.++.......+.++|++-..++....-..+.+.-+.+ ++ +.+.++..||.+.+|--+...
T Consensus 235 ~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~ 314 (1062)
T KOG1912|consen 235 QFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPN 314 (1062)
T ss_pred hhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccc
Confidence 3567887666666667778999999988888777666665555555 33 489999999999999754311
Q ss_pred ---------eeeEecc-CCCcEEEEEEecC-CCEEEEEeCCCcEEEEECCCCceEEEE----------------------
Q 001042 1038 ---------CDAVLAC-HAGPVQCVEYSSS-DRGIITGSSDGLLRFWENDDGGIKCVK---------------------- 1084 (1178)
Q Consensus 1038 ---------~~~~~~~-h~~~I~~l~~spd-g~~L~sgs~Dg~I~iwd~~~~~~~~~~---------------------- 1084 (1178)
....+.. ..-.+...+..|. ...++.--++|.+.+|.+.+|+.....
T Consensus 315 ~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k 394 (1062)
T KOG1912|consen 315 ASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGK 394 (1062)
T ss_pred hhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhh
Confidence 1111110 0111112222333 222333335677778887754211000
Q ss_pred -------EecccCCcEEEE-------------ecCC-------CEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeE
Q 001042 1085 -------NVTIHSSAILSI-------------NAGD-------HWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQL 1137 (1178)
Q Consensus 1085 -------~~~~h~~~i~~i-------------s~dg-------~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~ 1137 (1178)
...+|.....+. .|.| .++|.|+..|+|.++|+.++ .+
T Consensus 395 ~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~---------------~v 459 (1062)
T KOG1912|consen 395 TSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTN---------------AV 459 (1062)
T ss_pred ccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecch---------------hh
Confidence 001233332222 1222 36889999999999999854 55
Q ss_pred eeccCCCcccEEEEEEcCCCCEEEEE---------eCCCcEEEEECCCC
Q 001042 1138 YRTPQKTVAVVRCIASDLERKRICSG---------GRNGLLRLWEATIN 1177 (1178)
Q Consensus 1138 ~~~~~~h~~~V~~lafspdg~~Las~---------s~Dg~V~IWdv~tg 1177 (1178)
.+.+..|...|.++.|.....++-.+ +.-+.+.|=|+.||
T Consensus 460 ~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtG 508 (1062)
T KOG1912|consen 460 AASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTG 508 (1062)
T ss_pred hhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccc
Confidence 66677899999999998776654322 22234666677666
No 251
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.24 E-value=2.4e-10 Score=137.35 Aligned_cols=222 Identities=16% Similarity=0.269 Sum_probs=169.0
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCce--EE
Q 001042 851 AGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQV--SC 928 (1178)
Q Consensus 851 ~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V--~~ 928 (1178)
+.+++++..-+.+..=+.+ .+....+..+... ..+..+...++.++.+..+.+||...+.....+....... .+
T Consensus 61 ~~~~v~~~~~~~v~~~~~~---~~~~~~~s~wi~g-~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~ 136 (967)
T KOG0974|consen 61 SGKIVTCAKSDEVYVKEAS---NQIIERFSDWIFG-AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSS 136 (967)
T ss_pred cceEEEEEeecceeecchh---hhhhhhccccccc-cchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeE
Confidence 4556666655555544432 2222222222222 2356778889999999999999999887776665332221 11
Q ss_pred EEE--e-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEE-EEec
Q 001042 929 VRM--L-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMH-KFLG 1004 (1178)
Q Consensus 929 l~~--~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~-~~~~ 1004 (1178)
+-+ + +.-++++|+.-+.|.+|+....+.-..+.+|++.|.++.++-||+++++.+.|.++++|++.+.+... ..-+
T Consensus 137 ~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fg 216 (967)
T KOG0974|consen 137 LIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFG 216 (967)
T ss_pred EEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccc
Confidence 112 2 34468899999999999987544444678999999999999999999999999999999999988776 5668
Q ss_pred CCccEEEEEEcCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCC-cEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 001042 1005 HTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAG-PVQCVEYSSSDRGIITGSSDGLLRFWENDD 1077 (1178)
Q Consensus 1005 ~~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~-~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~ 1077 (1178)
|...+..+.+.++.+++++.|.+.++|+. +++.+.++.+|.+ .|+.++..++...++|++.||.+++||...
T Consensus 217 HsaRvw~~~~~~n~i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 217 HSARVWACCFLPNRIITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ccceeEEEEeccceeEEeccceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 99999999999999999999999999975 4555567777754 699999999999999999999999999764
No 252
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=2.7e-09 Score=119.74 Aligned_cols=309 Identities=8% Similarity=0.088 Sum_probs=197.8
Q ss_pred cCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEEeC-----------CCcEEEEECCCCcEE
Q 001042 848 REDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSD-----------DQSVLVWDKQTSQLL 916 (1178)
Q Consensus 848 s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sgs~-----------dg~I~iwd~~t~~~~ 916 (1178)
||-|.+|+|-...| |.+|-= ......+.+......-..+||..++|+|-+. ...++|||+.+|...
T Consensus 219 SP~GTYL~t~Hk~G-I~lWGG--~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lk 295 (698)
T KOG2314|consen 219 SPKGTYLVTFHKQG-IALWGG--ESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLK 295 (698)
T ss_pred cCCceEEEEEeccc-eeeecC--ccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchh
Confidence 38999999999888 999962 2333333443223344478999999998653 257999999999988
Q ss_pred EEecC--CCCceE-EEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeC-----CCe
Q 001042 917 EELKG--HDAQVS-CVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGR-----DAV 987 (1178)
Q Consensus 917 ~~l~~--h~~~V~-~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~-----dg~ 987 (1178)
+.+.. ....++ -..|+ ++.+++.-.. .+|.||+..+-..+..-.-.-..|....|+|.++.||-=+. -..
T Consensus 296 rsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~par 374 (698)
T KOG2314|consen 296 RSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPAR 374 (698)
T ss_pred cceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcce
Confidence 88765 333333 35688 6666654444 67899987764443322233467888999999888875432 234
Q ss_pred EEEEECCCCceEEEEecCCccEEEEEE--cCCEEEEEe----------CCCcEEEEEcCCCeeeeEeccCCCcEEEEEEe
Q 001042 988 ANIWDIRAGRQMHKFLGHTKWIRSIRM--DRDTVITGS----------DDWTARMWSISRGTCDAVLACHAGPVQCVEYS 1055 (1178)
Q Consensus 988 I~lwD~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sgs----------~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~s 1055 (1178)
+.+..+.+++.+++..-+.-.=..+.| +|++|+.-- .-..+.|+.++..........-...|...+|-
T Consensus 375 vtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWE 454 (698)
T KOG2314|consen 375 VTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWE 454 (698)
T ss_pred EEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeec
Confidence 667777777766665444333334445 455665432 11235556655543332222346788999999
Q ss_pred cCCCEEEEEeC---CCcEEEEECCC--CceEEEEEecccCCcEEEEecCCCEEEEE---eCCCcEEEEEcCCCccccccC
Q 001042 1056 SSDRGIITGSS---DGLLRFWENDD--GGIKCVKNVTIHSSAILSINAGDHWLGIG---AADNSMSLFHRPQERLGGFSG 1127 (1178)
Q Consensus 1056 pdg~~L~sgs~---Dg~I~iwd~~~--~~~~~~~~~~~h~~~i~~is~dg~~Lasg---s~Dg~I~iwd~~~~~~~~~~~ 1127 (1178)
|.|+.+++-+. ..++.+|.+.+ +....++.+......-..++|.|++++.+ |..|.+..+|..-.
T Consensus 455 P~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a------- 527 (698)
T KOG2314|consen 455 PHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYA------- 527 (698)
T ss_pred cCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchh-------
Confidence 99998776553 45788998873 24455556655445556679999998875 45788999998621
Q ss_pred CCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeC------CCcEEEEECC
Q 001042 1128 TGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGR------NGLLRLWEAT 1175 (1178)
Q Consensus 1128 ~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~------Dg~V~IWdv~ 1175 (1178)
.+..+........+.+.|.|.|+++++++. |.--++|+..
T Consensus 528 --------~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 528 --------DLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred --------hhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence 111111111234678899999999999975 4445666654
No 253
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.21 E-value=6.8e-10 Score=133.59 Aligned_cols=259 Identities=16% Similarity=0.155 Sum_probs=180.8
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEec------CCCCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCE
Q 001042 894 GKVVSGSDDQSVLVWDKQTSQLLEELK------GHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAV 967 (1178)
Q Consensus 894 ~~l~sgs~dg~I~iwd~~t~~~~~~l~------~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I 967 (1178)
++|++|.. ..|.+||+.++..+..+. .| .+....-..+.+++++..-+.+..-+.... .+......+
T Consensus 18 ~~llag~g-p~i~~yd~~s~~li~~~~~~~~~~~H--~~e~~~~l~~~~~v~~~~~~~v~~~~~~~~----~~~~~s~wi 90 (967)
T KOG0974|consen 18 DYLLAGSG-PEILVYDLSSGCLIRHLIQSKILEVH--RGEGKVKLLSGKIVTCAKSDEVYVKEASNQ----IIERFSDWI 90 (967)
T ss_pred ceeeecCC-CceEEeeCCchhHhhhhhhhcccccc--cccccceeccceEEEEEeecceeecchhhh----hhhhccccc
Confidence 56665543 679999999886654432 34 011111112445666655444433322211 111223444
Q ss_pred EEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEE-EEE-E--cC--CEEEEEeCCCcEEEEEcCCCeeeeE
Q 001042 968 LCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIR-SIR-M--DR--DTVITGSDDWTARMWSISRGTCDAV 1041 (1178)
Q Consensus 968 ~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~-~l~-~--~~--~~l~sgs~dg~I~iwd~~~~~~~~~ 1041 (1178)
....+..+...++.++.++.+.+||...+.............. +.. + ++ =++++|+.-+.|.+|+....+....
T Consensus 91 ~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~ 170 (967)
T KOG0974|consen 91 FGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIR 170 (967)
T ss_pred cccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcce
Confidence 4455556777899999999999999988877766644333221 111 1 22 3899999999999999885444446
Q ss_pred eccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEEecCCCEEEEEeCCCcEEEEEcCCCc
Q 001042 1042 LACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRPQER 1121 (1178)
Q Consensus 1042 ~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~Lasgs~Dg~I~iwd~~~~~ 1121 (1178)
+.+|.+.|.++.++.||+++++.|.|.++++|++++++... ...-+|+.+++..-.....+++++.|.+.++|+....
T Consensus 171 l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-~~~fgHsaRvw~~~~~~n~i~t~gedctcrvW~~~~~- 248 (967)
T KOG0974|consen 171 LKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-CTGFGHSARVWACCFLPNRIITVGEDCTCRVWGVNGT- 248 (967)
T ss_pred ecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC-cccccccceeEEEEeccceeEEeccceEEEEEecccc-
Confidence 88999999999999999999999999999999999985322 3556899999887544449999999999999976422
Q ss_pred cccccCCCCCccceeEeeccCCCc-ccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001042 1122 LGGFSGTGSKMSGWQLYRTPQKTV-AVVRCIASDLERKRICSGGRNGLLRLWEATI 1176 (1178)
Q Consensus 1122 ~~~~~~~g~~~~~~~~~~~~~~h~-~~V~~lafspdg~~Las~s~Dg~V~IWdv~t 1176 (1178)
.+....+|. ..|+.++..++...++|++.||.+++|+...
T Consensus 249 ---------------~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 249 ---------------QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ---------------eehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 122444554 4599999999999999999999999999754
No 254
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=4.8e-09 Score=125.72 Aligned_cols=213 Identities=12% Similarity=0.039 Sum_probs=142.0
Q ss_pred CeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeC---CCeEEEEECCCCceEEEEecCCccEEEEEEc--CCE
Q 001042 944 GTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGR---DAVANIWDIRAGRQMHKFLGHTKWIRSIRMD--RDT 1018 (1178)
Q Consensus 944 g~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~---dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~--~~~ 1018 (1178)
..|.+||..... .+.+..+...+.+.+|+|||+.|+..+. +..|++||+.+++.. .+..+.+.+.+.+|+ ++.
T Consensus 182 ~~l~~~d~dg~~-~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQDGAN-VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECCCCCC-cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence 478899985444 4455567788999999999999888763 468999999888653 344455566677774 455
Q ss_pred EE-EEeCCCc--EEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeC-CC--cEEEEECCCCceEEEEEecccCCc
Q 001042 1019 VI-TGSDDWT--ARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSS-DG--LLRFWENDDGGIKCVKNVTIHSSA 1092 (1178)
Q Consensus 1019 l~-sgs~dg~--I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~-Dg--~I~iwd~~~~~~~~~~~~~~h~~~ 1092 (1178)
++ +.+.+|. |++||+.+++. ..+..+.+......|+|||+.|+..+. +| .|.+||+.++....+....+. ..
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~-~~ 337 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGR-YS 337 (435)
T ss_pred EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCc-cc
Confidence 54 5555555 77789887765 445556666778999999999887763 33 688889887754433321111 22
Q ss_pred EEEEecCCCEEEEEeCC---CcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCC---
Q 001042 1093 ILSINAGDHWLGIGAAD---NSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRN--- 1166 (1178)
Q Consensus 1093 i~~is~dg~~Lasgs~D---g~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~D--- 1166 (1178)
...++|||+.|+..+.+ ..|.+||+.++.. ..+. .+ ..+....|+|||+.|+..+.+
T Consensus 338 ~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-------------~~lt--~~--~~~~~p~~spDG~~i~~~~~~~~~ 400 (435)
T PRK05137 338 TPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-------------RILT--SG--FLVEGPTWAPNGRVIMFFRQTPGS 400 (435)
T ss_pred CeEECCCCCEEEEEEcCCCceEEEEEECCCCce-------------Eecc--CC--CCCCCCeECCCCCEEEEEEccCCC
Confidence 24579999999887653 3577788653210 1111 11 235678999999998776543
Q ss_pred ---CcEEEEECCCC
Q 001042 1167 ---GLLRLWEATIN 1177 (1178)
Q Consensus 1167 ---g~V~IWdv~tg 1177 (1178)
..+.++|++.+
T Consensus 401 ~~~~~L~~~dl~g~ 414 (435)
T PRK05137 401 GGAPKLYTVDLTGR 414 (435)
T ss_pred CCcceEEEEECCCC
Confidence 24677777553
No 255
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=2.3e-09 Score=128.41 Aligned_cols=229 Identities=16% Similarity=0.105 Sum_probs=149.0
Q ss_pred eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCC---CcEEEE
Q 001042 790 VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTD---CLVKIW 866 (1178)
Q Consensus 790 I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~D---g~I~iW 866 (1178)
|.+||.++.. .+.+..|...+.+.+|+ |||+.|+.++.+ ..|.+|
T Consensus 186 l~i~D~~g~~--------------------~~~lt~~~~~v~~p~wS------------pDg~~la~~s~~~~~~~l~~~ 233 (433)
T PRK04922 186 LQVADSDGYN--------------------PQTILRSAEPILSPAWS------------PDGKKLAYVSFERGRSAIYVQ 233 (433)
T ss_pred EEEECCCCCC--------------------ceEeecCCCccccccCC------------CCCCEEEEEecCCCCcEEEEE
Confidence 8889886443 34566677788888887 899999988743 469999
Q ss_pred cCCCCCceeeEeecccccceEEEecCCCEEE-EEeCCC--cEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeC
Q 001042 867 DPSLRGSELRATLKGHTRTVRAINSDRGKVV-SGSDDQ--SVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASH 942 (1178)
Q Consensus 867 d~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~-sgs~dg--~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~ 942 (1178)
|+.......+....++. ....|+|||+.++ +.+.+| .|.+||+.+++. ..+..+.......+|+ ++..++.++.
T Consensus 234 dl~~g~~~~l~~~~g~~-~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd 311 (433)
T PRK04922 234 DLATGQRELVASFRGIN-GAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSD 311 (433)
T ss_pred ECCCCCEEEeccCCCCc-cCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEEC
Confidence 98633332222233222 1236899999876 445555 599999998875 4455565566778898 6777776653
Q ss_pred -CCe--EEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCC---eEEEEECCCCceEEEEecCCccEEEEEE--
Q 001042 943 -DGT--VKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDA---VANIWDIRAGRQMHKFLGHTKWIRSIRM-- 1014 (1178)
Q Consensus 943 -dg~--V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg---~I~lwD~~~~~~~~~~~~~~~~v~~l~~-- 1014 (1178)
+|. |.++|+.+++..... .........+|+|+|+.++..+.++ .|.+||+.+++.. .+. +........|
T Consensus 312 ~~g~~~iy~~dl~~g~~~~lt-~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~sp 388 (433)
T PRK04922 312 RGGRPQIYRVAASGGSAERLT-FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAP 388 (433)
T ss_pred CCCCceEEEEECCCCCeEEee-cCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECC
Confidence 444 677777776643322 2233445789999999998775443 6999999887654 332 2223334556
Q ss_pred cCCEEEEEeCC---CcEEEEEcCCCeeeeEeccCCCcEEEEEEec
Q 001042 1015 DRDTVITGSDD---WTARMWSISRGTCDAVLACHAGPVQCVEYSS 1056 (1178)
Q Consensus 1015 ~~~~l~sgs~d---g~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp 1056 (1178)
+++.++..+.+ +.+.+++.. +.....+..+.+.+...+|+|
T Consensus 389 dG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 389 NGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CCCEEEEEEecCCceEEEEEECC-CCceEEcccCCCCCCCCccCC
Confidence 55566655543 357778874 444555655566777778876
No 256
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.18 E-value=9.5e-09 Score=110.07 Aligned_cols=173 Identities=15% Similarity=0.255 Sum_probs=116.9
Q ss_pred cceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEE--EecC-CCEEEEEeCCCc
Q 001042 828 GAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSD-RGKVVSGSDDQS 904 (1178)
Q Consensus 828 ~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~--~s~d-~~~l~sgs~dg~ 904 (1178)
..+..++|+ +.-..+|++..|-+|++||-+.+....++. .....|.| +.|. +..++.|+.. -
T Consensus 99 ~dlr~~aWh------------qH~~~fava~nddvVriy~ksst~pt~Lks--~sQrnvtclawRPlsaselavgCr~-g 163 (445)
T KOG2139|consen 99 IDLRGVAWH------------QHIIAFAVATNDDVVRIYDKSSTCPTKLKS--VSQRNVTCLAWRPLSASELAVGCRA-G 163 (445)
T ss_pred cceeeEeec------------hhhhhhhhhccCcEEEEeccCCCCCceecc--hhhcceeEEEeccCCcceeeeeecc-e
Confidence 346667776 545567888999999999965322222222 22334554 5554 4567777764 5
Q ss_pred EEEEECCCC----cE----------EEEecCCCCceEEEEEe-CCCeEEEEeC-CCeEEEEeCCCCeEEEEecCCCCCEE
Q 001042 905 VLVWDKQTS----QL----------LEELKGHDAQVSCVRML-SGERVLTASH-DGTVKMWDVRTDTCVATVGRCSSAVL 968 (1178)
Q Consensus 905 I~iwd~~t~----~~----------~~~l~~h~~~V~~l~~~-~~~~l~sgs~-dg~V~iwd~~~~~~~~~~~~~~~~I~ 968 (1178)
|.+|..... .. +....+| ..|+++.|. ++..+++++. |..|.+||..++..+.......+.+.
T Consensus 164 IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~s 242 (445)
T KOG2139|consen 164 ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFS 242 (445)
T ss_pred eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCcee
Confidence 899976431 11 1122344 689999999 7888888774 67899999999987766655567889
Q ss_pred EEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEcC
Q 001042 969 CMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR 1016 (1178)
Q Consensus 969 ~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~ 1016 (1178)
-+.|||||.++++++-|+..++|+..............+.|....|++
T Consensus 243 lLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWsp 290 (445)
T KOG2139|consen 243 LLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSP 290 (445)
T ss_pred eEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecC
Confidence 999999999999999999999996543322222223334777777754
No 257
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.14 E-value=2.9e-09 Score=113.23 Aligned_cols=239 Identities=11% Similarity=0.253 Sum_probs=159.0
Q ss_pred cceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCC---ceeeEeecccccc------------eEE--Ee
Q 001042 828 GAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRG---SELRATLKGHTRT------------VRA--IN 890 (1178)
Q Consensus 828 ~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~---~~~~~~l~~h~~~------------V~~--~s 890 (1178)
.-|.+|.|. .+|.+||||..+|.|.++.-+... ......++.|... |.. +.
T Consensus 26 diis~vef~------------~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~ 93 (433)
T KOG1354|consen 26 DIISAVEFD------------HYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWL 93 (433)
T ss_pred cceeeEEee------------cccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceec
Confidence 446666665 899999999999999999744211 1133445555432 222 22
Q ss_pred c--CCCEEEEEeCCCcEEEEECCCCcEE-----------------------------------EEe-cCCCCceEEEEEe
Q 001042 891 S--DRGKVVSGSDDQSVLVWDKQTSQLL-----------------------------------EEL-KGHDAQVSCVRML 932 (1178)
Q Consensus 891 ~--d~~~l~sgs~dg~I~iwd~~t~~~~-----------------------------------~~l-~~h~~~V~~l~~~ 932 (1178)
. +...++..+.|.+|++|.+...... +.+ .+|.-.|+++.++
T Consensus 94 ~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~N 173 (433)
T KOG1354|consen 94 DDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVN 173 (433)
T ss_pred CCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeec
Confidence 2 3456788889999999987432110 011 2577788899998
Q ss_pred CCCeEEEEeCCCeEEEEeCCCC-eE--EEEecCC-----CCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCceE----
Q 001042 933 SGERVLTASHDGTVKMWDVRTD-TC--VATVGRC-----SSAVLCMEYDDS-TGILAAGGRDAVANIWDIRAGRQM---- 999 (1178)
Q Consensus 933 ~~~~l~sgs~dg~V~iwd~~~~-~~--~~~~~~~-----~~~I~~l~~sp~-~~~l~sgs~dg~I~lwD~~~~~~~---- 999 (1178)
++...+....|=.|.+|++.-- +. +..++.+ ..-|++..|+|. .+.++-.+..|+|++.|++.....
T Consensus 174 sD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hs 253 (433)
T KOG1354|consen 174 SDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHS 253 (433)
T ss_pred CccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchh
Confidence 5555555667889999998643 22 2222222 245888999994 567778888999999999854321
Q ss_pred EEE------------ecCCccEEEEEE--cCCEEEEEeCCCcEEEEEcC-CCeeeeEeccCCC------------c---E
Q 001042 1000 HKF------------LGHTKWIRSIRM--DRDTVITGSDDWTARMWSIS-RGTCDAVLACHAG------------P---V 1049 (1178)
Q Consensus 1000 ~~~------------~~~~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~-~~~~~~~~~~h~~------------~---I 1049 (1178)
+.+ ..--..|..+.| +|+++++-+. -+|++||+. ..+++.++.-|.. . -
T Consensus 254 KlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdK 332 (433)
T KOG1354|consen 254 KLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDK 332 (433)
T ss_pred hhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhhe
Confidence 111 112235777888 4557766543 589999994 4566666665532 2 2
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 001042 1050 QCVEYSSSDRGIITGSSDGLLRFWENDDGG 1079 (1178)
Q Consensus 1050 ~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~ 1079 (1178)
..++|+.++.+++||+..+.+++++...|.
T Consensus 333 Fec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 333 FECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred eEEEEcCCcceEecccccceEEEecCCCCc
Confidence 457899999999999999999999987774
No 258
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.14 E-value=3.8e-09 Score=126.02 Aligned_cols=202 Identities=11% Similarity=0.101 Sum_probs=131.6
Q ss_pred CcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCC---CeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCE
Q 001042 903 QSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHD---GTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGI 978 (1178)
Q Consensus 903 g~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~d---g~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~ 978 (1178)
..|.+||.. |.....+..+...+.+.+|+ +++.++..+.+ ..|.+||+.+++.... ....+...+.+|+|||+.
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV-ANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCE
Confidence 467777764 44445566678889999999 67778766542 4699999998876433 233455678999999998
Q ss_pred EEE-EeCCCeEEEE--ECCCCceEEEEecCCccEEEEEEc--CCEEEEEeC-CCcEEEEEc--CCCeeeeEeccCCCcEE
Q 001042 979 LAA-GGRDAVANIW--DIRAGRQMHKFLGHTKWIRSIRMD--RDTVITGSD-DWTARMWSI--SRGTCDAVLACHAGPVQ 1050 (1178)
Q Consensus 979 l~s-gs~dg~I~lw--D~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sgs~-dg~I~iwd~--~~~~~~~~~~~h~~~I~ 1050 (1178)
++. .+.+|...+| |..++. ...+..+........|+ ++.++..+. +|...+|.+ .+++.. .+..+.....
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~g~~~~ 331 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFTGSYNT 331 (427)
T ss_pred EEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEecCCCCcC
Confidence 874 5667765555 454443 44454454445566774 556665553 466666654 444332 2222233345
Q ss_pred EEEEecCCCEEEEEeCCC---cEEEEECCCCceEEEEEecccCCcEEEEecCCCEEEEEeCCC
Q 001042 1051 CVEYSSSDRGIITGSSDG---LLRFWENDDGGIKCVKNVTIHSSAILSINAGDHWLGIGAADN 1110 (1178)
Q Consensus 1051 ~l~~spdg~~L~sgs~Dg---~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~Lasgs~Dg 1110 (1178)
..+|+|||++|+..+.++ .|.+||+.+++...+. ......-.+++|||+.|+.++.++
T Consensus 332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt--~~~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT--DTTRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred ceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc--CCCCccCceECCCCCEEEEEEecC
Confidence 678999999998777554 5999999988543332 222233457799999998877654
No 259
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.14 E-value=1.1e-07 Score=107.48 Aligned_cols=256 Identities=13% Similarity=0.061 Sum_probs=163.3
Q ss_pred CcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeC----------CCeEEEEeCCCCeEEEEecCCCC------
Q 001042 903 QSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASH----------DGTVKMWDVRTDTCVATVGRCSS------ 965 (1178)
Q Consensus 903 g~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~----------dg~V~iwd~~~~~~~~~~~~~~~------ 965 (1178)
++|.+.|..+++.+..+..-..+-. + .+ +++.++++.. +..|.+||..+.+.+..+.....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 8999999999999988875443333 4 66 6666665544 78999999999999988864322
Q ss_pred -CEEEEEEeCCCCEEEEEe-C-CCeEEEEECCCCceEEEEecCCccEEEEEEcCCEEEEEeCCCcEEEEEcCC-Ceee-e
Q 001042 966 -AVLCMEYDDSTGILAAGG-R-DAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISR-GTCD-A 1040 (1178)
Q Consensus 966 -~I~~l~~sp~~~~l~sgs-~-dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~-~~~~-~ 1040 (1178)
....++++|||+++++.. . ++.+.+.|+.+++.+.++.-.. ...-....++...+-+.||......+.+ |+.. .
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~ 183 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIK 183 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCccEEEeecCceEEEEecCCCceEEe
Confidence 234789999999999776 4 7899999999999998876432 2222223333333444555554433322 2211 1
Q ss_pred E---eccCCCcE-EEEEEec-CCCEEEEEeCCCcEEEEECCCCceEEEEEec---c---------cCCcEEEEecCCCEE
Q 001042 1041 V---LACHAGPV-QCVEYSS-SDRGIITGSSDGLLRFWENDDGGIKCVKNVT---I---------HSSAILSINAGDHWL 1103 (1178)
Q Consensus 1041 ~---~~~h~~~I-~~l~~sp-dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~---~---------h~~~i~~is~dg~~L 1103 (1178)
. +.....++ ..-.|++ +|++++.... |+|.+.|+.+.+......+. . ......+++++++.+
T Consensus 184 ~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~l 262 (352)
T TIGR02658 184 PTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRI 262 (352)
T ss_pred eeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEE
Confidence 1 11100110 0014455 8888877765 99999997554322222111 1 111237778999888
Q ss_pred EEEe----------CCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCC-EEEEEe-CCCcEEE
Q 001042 1104 GIGA----------ADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERK-RICSGG-RNGLLRL 1171 (1178)
Q Consensus 1104 asgs----------~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~-~Las~s-~Dg~V~I 1171 (1178)
.+.. ..+.|.++|..+++ .+.... -...+..++++|||+ +|++.+ .++.|.+
T Consensus 263 yV~~~~~~~~thk~~~~~V~ViD~~t~k---------------vi~~i~-vG~~~~~iavS~Dgkp~lyvtn~~s~~VsV 326 (352)
T TIGR02658 263 YLLADQRAKWTHKTASRFLFVVDAKTGK---------------RLRKIE-LGHEIDSINVSQDAKPLLYALSTGDKTLYI 326 (352)
T ss_pred EEEecCCccccccCCCCEEEEEECCCCe---------------EEEEEe-CCCceeeEEECCCCCeEEEEeCCCCCcEEE
Confidence 8743 12478999987543 222221 123588999999999 887666 6889999
Q ss_pred EECCCCC
Q 001042 1172 WEATINI 1178 (1178)
Q Consensus 1172 Wdv~tg~ 1178 (1178)
.|+.+++
T Consensus 327 iD~~t~k 333 (352)
T TIGR02658 327 FDAETGK 333 (352)
T ss_pred EECcCCe
Confidence 9998874
No 260
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.13 E-value=1.6e-08 Score=121.24 Aligned_cols=210 Identities=10% Similarity=0.044 Sum_probs=142.4
Q ss_pred CcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeC---CCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCE
Q 001042 903 QSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASH---DGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGI 978 (1178)
Q Consensus 903 g~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~---dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~ 978 (1178)
..|.+||.+. .....+..|...+.+..|+ +++.++..+. +..|.+||+.+++.. .+....+.+...+|+|||+.
T Consensus 182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECCCC-CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence 3788999854 4446677788899999999 6777776653 468999999888754 33445566778999999998
Q ss_pred EEE-EeCCC--eEEEEECCCCceEEEEecCCccEEEEEEc--CCEEEEEeC-CC--cEEEEEcCCCeeeeEeccCCCcEE
Q 001042 979 LAA-GGRDA--VANIWDIRAGRQMHKFLGHTKWIRSIRMD--RDTVITGSD-DW--TARMWSISRGTCDAVLACHAGPVQ 1050 (1178)
Q Consensus 979 l~s-gs~dg--~I~lwD~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sgs~-dg--~I~iwd~~~~~~~~~~~~h~~~I~ 1050 (1178)
++. .+.+| .|++||+.+++. ..+..+........|+ ++.++..+. +| .|++||+..++.. .+..+.+.+.
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~ 337 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYS 337 (435)
T ss_pred EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCccc
Confidence 764 44454 488889887765 3444455555566774 556766653 33 5888887766543 3433455677
Q ss_pred EEEEecCCCEEEEEeCC---CcEEEEECCCCceEEEEEecccCCcEEEEecCCCEEEEEeCC------CcEEEEEcC
Q 001042 1051 CVEYSSSDRGIITGSSD---GLLRFWENDDGGIKCVKNVTIHSSAILSINAGDHWLGIGAAD------NSMSLFHRP 1118 (1178)
Q Consensus 1051 ~l~~spdg~~L~sgs~D---g~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~Lasgs~D------g~I~iwd~~ 1118 (1178)
...|+|+|+.|+..+.+ ..|.+||..++....+. .++...-.+++|||+.|+..+.+ ..+.++|+.
T Consensus 338 ~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt--~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 338 TPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILT--SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred CeEECCCCCEEEEEEcCCCceEEEEEECCCCceEecc--CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence 78999999999877643 35888898765432221 22223345679999998876543 246666765
No 261
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.12 E-value=2.7e-07 Score=107.02 Aligned_cols=268 Identities=14% Similarity=0.208 Sum_probs=171.0
Q ss_pred EEEEeCC----CcEEEEEC--CCCcEE--EEecCCCCceEEEEEe-CCCeEEEEeC----CCeEEEEeCCCC--e--EEE
Q 001042 896 VVSGSDD----QSVLVWDK--QTSQLL--EELKGHDAQVSCVRML-SGERVLTASH----DGTVKMWDVRTD--T--CVA 958 (1178)
Q Consensus 896 l~sgs~d----g~I~iwd~--~t~~~~--~~l~~h~~~V~~l~~~-~~~~l~sgs~----dg~V~iwd~~~~--~--~~~ 958 (1178)
+++|+.. +.|.+|++ ++++.. .... .......++++ +++.|+++.. +|.|..|++... + .+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 4556655 68999988 445442 2222 33445667777 6777777766 579999988764 3 333
Q ss_pred EecCCCCCEEEEEEeCCCCEEEEEe-CCCeEEEEECCC-CceEEE--Ee-----------cCCccEEEEEEcC--CEEEE
Q 001042 959 TVGRCSSAVLCMEYDDSTGILAAGG-RDAVANIWDIRA-GRQMHK--FL-----------GHTKWIRSIRMDR--DTVIT 1021 (1178)
Q Consensus 959 ~~~~~~~~I~~l~~sp~~~~l~sgs-~dg~I~lwD~~~-~~~~~~--~~-----------~~~~~v~~l~~~~--~~l~s 1021 (1178)
...........++++|++++++++. .+|.+.++++.. +..... .. .......++.+++ +++++
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 4433455667899999999999887 589999999987 433222 11 1223567788864 46655
Q ss_pred Ee-CCCcEEEEEcCCCe--ee--eEec-cCCCcEEEEEEecCCCEEEEEe-CCCcEEEEECC--CCceEEEEEeccc---
Q 001042 1022 GS-DDWTARMWSISRGT--CD--AVLA-CHAGPVQCVEYSSSDRGIITGS-SDGLLRFWEND--DGGIKCVKNVTIH--- 1089 (1178)
Q Consensus 1022 gs-~dg~I~iwd~~~~~--~~--~~~~-~h~~~I~~l~~spdg~~L~sgs-~Dg~I~iwd~~--~~~~~~~~~~~~h--- 1089 (1178)
.. ....|.+|++.... .. ..+. ........++|+|+++++.... .++.|.++++. ++...........
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~ 240 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG 240 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred EecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc
Confidence 54 45579999997654 21 2222 2345678999999999876554 67889999988 5555555444322
Q ss_pred -----CCcEEEEecCCCEEEEEe-CCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEE
Q 001042 1090 -----SSAILSINAGDHWLGIGA-ADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSG 1163 (1178)
Q Consensus 1090 -----~~~i~~is~dg~~Lasgs-~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~ 1163 (1178)
...-..++|||++|.++. .+++|.+|++... +| .+ +.+.........-+.++++|+|++|+++
T Consensus 241 ~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~-------~g-~l---~~~~~~~~~G~~Pr~~~~s~~g~~l~Va 309 (345)
T PF10282_consen 241 FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPA-------TG-TL---TLVQTVPTGGKFPRHFAFSPDGRYLYVA 309 (345)
T ss_dssp SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTT-------TT-TE---EEEEEEEESSSSEEEEEE-TTSSEEEEE
T ss_pred ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecC-------CC-ce---EEEEEEeCCCCCccEEEEeCCCCEEEEE
Confidence 122355699999988765 4678999999522 22 12 2222222223347899999999999988
Q ss_pred e-CCCcEEEEECC
Q 001042 1164 G-RNGLLRLWEAT 1175 (1178)
Q Consensus 1164 s-~Dg~V~IWdv~ 1175 (1178)
+ .++.|.+|+++
T Consensus 310 ~~~s~~v~vf~~d 322 (345)
T PF10282_consen 310 NQDSNTVSVFDID 322 (345)
T ss_dssp ETTTTEEEEEEEE
T ss_pred ecCCCeEEEEEEe
Confidence 7 56789999774
No 262
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.12 E-value=4.5e-09 Score=125.45 Aligned_cols=220 Identities=14% Similarity=0.084 Sum_probs=138.2
Q ss_pred eEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCC---CcEEEEcCCCCCceeeEeecccccceEEEecCCCEE
Q 001042 820 IRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTD---CLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKV 896 (1178)
Q Consensus 820 ~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~D---g~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l 896 (1178)
.+.+..+...+.+.+|+ |||+.|+.++.+ ..|.+||+............++. ....|+|||+.+
T Consensus 188 ~~~l~~~~~~v~~p~wS------------PDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~-~~~~~SPDG~~l 254 (427)
T PRK02889 188 AQSALSSPEPIISPAWS------------PDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSN-SAPAWSPDGRTL 254 (427)
T ss_pred ceEeccCCCCcccceEc------------CCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCc-cceEECCCCCEE
Confidence 34455677888888887 899999887653 35999998733322222233322 233689999988
Q ss_pred E-EEeCCCcEEEEE--CCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeC-CCeEEEEeC--CCCeEEEEecCCCCCEEE
Q 001042 897 V-SGSDDQSVLVWD--KQTSQLLEELKGHDAQVSCVRML-SGERVLTASH-DGTVKMWDV--RTDTCVATVGRCSSAVLC 969 (1178)
Q Consensus 897 ~-sgs~dg~I~iwd--~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~-dg~V~iwd~--~~~~~~~~~~~~~~~I~~ 969 (1178)
+ +.+.+|...||. +.++. ...+..+........|+ ++..++..+. +|...+|.+ .+++..... ........
T Consensus 255 a~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt-~~g~~~~~ 332 (427)
T PRK02889 255 AVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT-FTGSYNTS 332 (427)
T ss_pred EEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe-cCCCCcCc
Confidence 7 467777766665 44444 45566566666778899 6777775554 456666654 455432222 22233446
Q ss_pred EEEeCCCCEEEEEeCCC---eEEEEECCCCceEEEEecCCccEEEEEE--cCCEEEEEeCCC-c--EEEEEcCCCeeeeE
Q 001042 970 MEYDDSTGILAAGGRDA---VANIWDIRAGRQMHKFLGHTKWIRSIRM--DRDTVITGSDDW-T--ARMWSISRGTCDAV 1041 (1178)
Q Consensus 970 l~~sp~~~~l~sgs~dg---~I~lwD~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sgs~dg-~--I~iwd~~~~~~~~~ 1041 (1178)
.+|+|+|++++..+.++ .|.+||+.+++....... .......| +++.++.++.++ . +.+.+. ++.....
T Consensus 333 ~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~--~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~ 409 (427)
T PRK02889 333 PRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDT--TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQR 409 (427)
T ss_pred eEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCC--CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEE
Confidence 78999999998777554 699999988765432222 22345566 455666655433 3 555565 4555556
Q ss_pred eccCCCcEEEEEEecC
Q 001042 1042 LACHAGPVQCVEYSSS 1057 (1178)
Q Consensus 1042 ~~~h~~~I~~l~~spd 1057 (1178)
+..+.+.+...+|+|-
T Consensus 410 l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 410 LSVQGGDVREPSWGPF 425 (427)
T ss_pred eecCCCCCCCCccCCC
Confidence 6556677777888763
No 263
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.11 E-value=6.3e-09 Score=118.74 Aligned_cols=183 Identities=16% Similarity=0.243 Sum_probs=146.9
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCCceeeEeecc--c-ccc----eEEE------------------ecCCCEEEEEeCCC
Q 001042 849 EDAGFFISGSTDCLVKIWDPSLRGSELRATLKG--H-TRT----VRAI------------------NSDRGKVVSGSDDQ 903 (1178)
Q Consensus 849 ~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~--h-~~~----V~~~------------------s~d~~~l~sgs~dg 903 (1178)
+...++|....||.+|+||... .++...+.. | ++. .+.+ +.|...++-|...|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~--~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g 80 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAK--NQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQG 80 (541)
T ss_pred chhheEeecCCCCeEEEEEccC--ceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCc
Confidence 6678999999999999999763 333222221 1 111 1111 23455688899999
Q ss_pred cEEEEECCCCcEEEEec--CCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEE
Q 001042 904 SVLVWDKQTSQLLEELK--GHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILA 980 (1178)
Q Consensus 904 ~I~iwd~~t~~~~~~l~--~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~ 980 (1178)
.|.+|++..|+....+. .|.+.|.++.++ +-..|.+++.|+.+..|+...++.+.........+.+++++|||..++
T Consensus 81 ~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~ 160 (541)
T KOG4547|consen 81 SVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILL 160 (541)
T ss_pred cEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEE
Confidence 99999999999888775 689999999988 677899999999999999999999999999999999999999999999
Q ss_pred EEeCCCeEEEEECCCCceEEEEecCCccEEEEEE--c-----CCEEEE-EeCCCcEEEEEcCC
Q 001042 981 AGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM--D-----RDTVIT-GSDDWTARMWSISR 1035 (1178)
Q Consensus 981 sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~--~-----~~~l~s-gs~dg~I~iwd~~~ 1035 (1178)
+++ +.|++||+++++.+..+.+|.++|.+++| + |.++++ ...+..+.+|-+..
T Consensus 161 ~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 161 TAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 887 67999999999999999999999999998 2 345444 44566677887654
No 264
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.10 E-value=2.7e-07 Score=102.06 Aligned_cols=371 Identities=13% Similarity=0.172 Sum_probs=209.6
Q ss_pred CCCCCcccccCCcceEEEEecCCCCcccccccceeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEee
Q 001042 757 DDQQPAEASGIGRSWVQSMFSREASSRSHSFSRVRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCV 836 (1178)
Q Consensus 757 ~~~~~~~~~gh~~~i~~~aFSpdg~~las~~~dI~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs 836 (1178)
.++++.++..|-+-+....|||||+.+|.+ |+|--++.+.. .+....+..+....+.+-
T Consensus 67 k~g~~~ritS~lGVvnn~kf~pdGrkvaf~----rv~~~ss~~ta-----------------Dly~v~~e~Ge~kRiTyf 125 (668)
T COG4946 67 KDGKPLRITSGLGVVNNPKFSPDGRKVAFS----RVMLGSSLQTA-----------------DLYVVPSEDGEAKRITYF 125 (668)
T ss_pred ccCCeeEEecccceeccccCCCCCcEEEEE----EEEecCCCccc-----------------cEEEEeCCCCcEEEEEEe
Confidence 567777777777777778999999988762 33322221100 122233333333334333
Q ss_pred eccceeccccccCCCCEEEEEeCCCcE----EEEcCCCCCceeeEeecccccceEEE-ecCCCEEEEE------------
Q 001042 837 TKREVWDLVGDREDAGFFISGSTDCLV----KIWDPSLRGSELRATLKGHTRTVRAI-NSDRGKVVSG------------ 899 (1178)
Q Consensus 837 ~~~~~~~~~~~s~d~~~Lasgs~Dg~I----~iWd~~~~~~~~~~~l~~h~~~V~~~-s~d~~~l~sg------------ 899 (1178)
....-++++|.|||+.+++...-.-. .+|.++..+.... .+ .-++.+.+ -.|| .++.|
T Consensus 126 -Gr~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e-~L--nlGpathiv~~dg-~ivigRntydLP~WK~Y 200 (668)
T COG4946 126 -GRRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTE-PL--NLGPATHIVIKDG-IIVIGRNTYDLPHWKGY 200 (668)
T ss_pred -ccccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceee-ec--cCCceeeEEEeCC-EEEEccCcccCcccccc
Confidence 23334567888999999987653322 2333332222111 11 11222222 2333 33322
Q ss_pred --eCCCcEEEEEC-CCCcEEEEecCCCCceEEEEEeCCCeEEEEeCCCeEEEEeCC-CCeEEEEecCCCCCEEEEEEeCC
Q 001042 900 --SDDQSVLVWDK-QTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVR-TDTCVATVGRCSSAVLCMEYDDS 975 (1178)
Q Consensus 900 --s~dg~I~iwd~-~t~~~~~~l~~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~-~~~~~~~~~~~~~~I~~l~~sp~ 975 (1178)
+..|. +|-- ..|+....+-.-.+.|++-..-.+...+....+|.=.+|.+. .|+-++...... .-.+=..+.|
T Consensus 201 kGGtrGk--lWis~d~g~tFeK~vdl~~~vS~PmIV~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFt-dYY~R~~nsD 277 (668)
T COG4946 201 KGGTRGK--LWISSDGGKTFEKFVDLDGNVSSPMIVGERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFT-DYYPRNANSD 277 (668)
T ss_pred cCCccce--EEEEecCCcceeeeeecCCCcCCceEEcceEEEEecccCccceEEeccCCchhhhcCCch-hccccccCCC
Confidence 22332 3432 223233333223333433333334444455556554444432 122222211111 1122334568
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEEec------CC--------ccEEEEEE-cCCEEEEEeCCCcEEEEEcCCCeeee
Q 001042 976 TGILAAGGRDAVANIWDIRAGRQMHKFLG------HT--------KWIRSIRM-DRDTVITGSDDWTARMWSISRGTCDA 1040 (1178)
Q Consensus 976 ~~~l~sgs~dg~I~lwD~~~~~~~~~~~~------~~--------~~v~~l~~-~~~~l~sgs~dg~I~iwd~~~~~~~~ 1040 (1178)
|+.++.. ..|.|++||..+.+..+---+ .. .-....+. ++++++..|. |...+.+...+-.++
T Consensus 278 GkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~~iq 355 (668)
T COG4946 278 GKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGYSIQ 355 (668)
T ss_pred CcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCeeEE
Confidence 8877653 567899999876543221111 00 01112222 5677777764 566676655554433
Q ss_pred EeccCCCcEEEEEEecCCCEEEEEeCCC-cEEEEECCCCceEEEEEecccCCcEEEE--ecCCCEEEEEeCCCcEEEEEc
Q 001042 1041 VLACHAGPVQCVEYSSSDRGIITGSSDG-LLRFWENDDGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHR 1117 (1178)
Q Consensus 1041 ~~~~h~~~I~~l~~spdg~~L~sgs~Dg-~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~dg~~Lasgs~Dg~I~iwd~ 1117 (1178)
. +|.+.|.-..+..+++-++.|..|| .+-++|..+++ ++.+...-+.|.++ +++|++++++.....+.+.|+
T Consensus 356 v--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e---~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vidi 430 (668)
T COG4946 356 V--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE---VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDI 430 (668)
T ss_pred c--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCce---EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEe
Confidence 2 4677788888888888899999999 89999999873 34444555666555 899999999999899999999
Q ss_pred CCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCC----cEEEEECCCCC
Q 001042 1118 PQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNG----LLRLWEATINI 1178 (1178)
Q Consensus 1118 ~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg----~V~IWdv~tg~ 1178 (1178)
.++. ....-+...+-|+..+|||+++++|-+=-+| .|+++|+.++|
T Consensus 431 dngn---------------v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K 480 (668)
T COG4946 431 DNGN---------------VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK 480 (668)
T ss_pred cCCC---------------eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe
Confidence 8552 2222234456799999999999999886555 68999988764
No 265
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.09 E-value=5.8e-10 Score=128.21 Aligned_cols=270 Identities=20% Similarity=0.292 Sum_probs=186.6
Q ss_pred ccccCcccccCCCCCCCC------------CCCCCCcccccCCcceEEE--EecCCCC---cccccccc-eeeccccccc
Q 001042 738 GQSSLSNGMPSPLSKDAT------------NDDQQPAEASGIGRSWVQS--MFSREAS---SRSHSFSR-VRKWTSDAAN 799 (1178)
Q Consensus 738 ~~~~~~~~~fSP~g~~~~------------~~~~~~~~~~gh~~~i~~~--aFSpdg~---~las~~~d-I~vWd~~~~~ 799 (1178)
.+.++++++ +|.|+|.. +..+.+.+...|-++|.-. .|||... ++++.+.. -.+|++....
T Consensus 24 ~~~~~a~si-~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSI-NPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceee-ccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 444454444 88888322 2667888888888887544 8888754 45555555 8899988544
Q ss_pred CCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEee
Q 001042 800 ENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATL 879 (1178)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l 879 (1178)
... .-..+.||+.+|+.+.|.+ .....+++++.|-.|..||+...........
T Consensus 103 ~~a----------------Ief~lhghsraitd~n~~~-----------q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~ 155 (1081)
T KOG0309|consen 103 SNA----------------IEFVLHGHSRAITDINFNP-----------QHPDVLATCSVDTYVHAWDMRSPHRPFYSTS 155 (1081)
T ss_pred ccc----------------eEEEEecCccceeccccCC-----------CCCcceeeccccccceeeeccCCCcceeeee
Confidence 211 4567899999999999986 5677899999999999999875544444444
Q ss_pred cccccce-EEEecCCCEEEEEeCCCcEEEEECCCC-cEEEEecCCCCceEEEEEe--CCCeEEEEeCCCeEEEEeCCCCe
Q 001042 880 KGHTRTV-RAINSDRGKVVSGSDDQSVLVWDKQTS-QLLEELKGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTDT 955 (1178)
Q Consensus 880 ~~h~~~V-~~~s~d~~~l~sgs~dg~I~iwd~~t~-~~~~~l~~h~~~V~~l~~~--~~~~l~sgs~dg~V~iwd~~~~~ 955 (1178)
.-|++.- ..++.....+.+.+..+.|.+||...| .++..+++|...|..++|+ -...+.+++.||+|+.||.....
T Consensus 156 ~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt 235 (1081)
T KOG0309|consen 156 SWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKST 235 (1081)
T ss_pred cccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccc
Confidence 4444332 256655555556667788999999865 5677889999999999998 46678999999999999986543
Q ss_pred EEE-EecCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEE---------CCC-CceEEEEecCCccEEEEEE------cC
Q 001042 956 CVA-TVGRCSSAVLCMEYDDSTG--ILAAGGRDAVANIWD---------IRA-GRQMHKFLGHTKWIRSIRM------DR 1016 (1178)
Q Consensus 956 ~~~-~~~~~~~~I~~l~~sp~~~--~l~sgs~dg~I~lwD---------~~~-~~~~~~~~~~~~~v~~l~~------~~ 1016 (1178)
... .....+.+|..-++-|-|. ++.-.-.+..+.+++ ..+ .++++++.||.+.|...-| ++
T Consensus 236 ~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~ 315 (1081)
T KOG0309|consen 236 TESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDG 315 (1081)
T ss_pred cccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccC
Confidence 221 1123345666666666433 222222222344443 333 3578999999999887777 12
Q ss_pred C------EEEEEeCCCcEEEEEcCC
Q 001042 1017 D------TVITGSDDWTARMWSISR 1035 (1178)
Q Consensus 1017 ~------~l~sgs~dg~I~iwd~~~ 1035 (1178)
+ .|++-+.|.++++|-+.+
T Consensus 316 d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 316 DYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred CCCccceeEEEeecCCceEeeeccH
Confidence 1 799999999999998754
No 266
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.08 E-value=2.5e-08 Score=104.45 Aligned_cols=264 Identities=14% Similarity=0.109 Sum_probs=178.7
Q ss_pred CCCcEEEEECCCCcEEE--E-ecCCCCceEEEEEe----CCC-eEEEEeCCCeEEEEeCCCCeEEEEecCCC------CC
Q 001042 901 DDQSVLVWDKQTSQLLE--E-LKGHDAQVSCVRML----SGE-RVLTASHDGTVKMWDVRTDTCVATVGRCS------SA 966 (1178)
Q Consensus 901 ~dg~I~iwd~~t~~~~~--~-l~~h~~~V~~l~~~----~~~-~l~sgs~dg~V~iwd~~~~~~~~~~~~~~------~~ 966 (1178)
..|.+.+|++.+.+... + .......+..+.|. +++ .++-+..+|.|.++..........+.+-. ..
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~ 123 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVE 123 (339)
T ss_pred eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhee
Confidence 34678899887765543 1 12234566777776 444 46677788999999876554444443321 12
Q ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEECCCCce--EEEEecCCccEEEEEE---cCCEEEEEeCCCcEEEEEcC-CCeeee
Q 001042 967 VLCMEYDDSTGILAAGGRDAVANIWDIRAGRQ--MHKFLGHTKWIRSIRM---DRDTVITGSDDWTARMWSIS-RGTCDA 1040 (1178)
Q Consensus 967 I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~--~~~~~~~~~~v~~l~~---~~~~l~sgs~dg~I~iwd~~-~~~~~~ 1040 (1178)
..++.|++.+..++++..+|.+.+-+...... ++.++.|.-.++..+| +++.+.+|++||.+..||++ .++.+.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 45788999999999999999999766655544 3478889988888888 57799999999999999999 444444
Q ss_pred E-eccCCCcEEEEEEec-CCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE--ec--CCCEEEEEeCCCcEEE
Q 001042 1041 V-LACHAGPVQCVEYSS-SDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI--NA--GDHWLGIGAADNSMSL 1114 (1178)
Q Consensus 1041 ~-~~~h~~~I~~l~~sp-dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~--dg~~Lasgs~Dg~I~i 1114 (1178)
. .+.|...|.++.-+| .+.++++|+.|..|++||.++-. +++.... -.+.|+.+ +| .+..++++ .-+-.+|
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~-kPl~~~~-v~GGVWRi~~~p~~~~~lL~~C-Mh~G~ki 280 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG-KPLFKAK-VGGGVWRIKHHPEIFHRLLAAC-MHNGAKI 280 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhccc-CccccCc-cccceEEEEecchhhhHHHHHH-HhcCceE
Confidence 4 456888999998776 46789999999999999998542 2222221 23566666 33 23334443 3344667
Q ss_pred EEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEe-CCCcEE-EEECCCC
Q 001042 1115 FHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGG-RNGLLR-LWEATIN 1177 (1178)
Q Consensus 1115 wd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s-~Dg~V~-IWdv~tg 1177 (1178)
.+.+.+. +. .-........|.+-+..-.|......|||++ .|..++ +|-.-|+
T Consensus 281 ~~~~~~~-------~e---~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 281 LDSSDKV-------LE---FQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred EEecccc-------cc---hheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 7765331 10 0024455667887787888866667889875 677755 8876654
No 267
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.08 E-value=1.3e-06 Score=101.21 Aligned_cols=265 Identities=12% Similarity=0.164 Sum_probs=170.1
Q ss_pred EEEEeCC----CcEEEEcCCCCCceee--Eee-cccccceEEEecCCCEEEEEeC----CCcEEEEECCCC--c--EEEE
Q 001042 854 FISGSTD----CLVKIWDPSLRGSELR--ATL-KGHTRTVRAINSDRGKVVSGSD----DQSVLVWDKQTS--Q--LLEE 918 (1178)
Q Consensus 854 Lasgs~D----g~I~iWd~~~~~~~~~--~~l-~~h~~~V~~~s~d~~~l~sgs~----dg~I~iwd~~t~--~--~~~~ 918 (1178)
++.|+.+ +.|.+|+++..+..+. ... .+....-.++++++++|.++.. +|.|..|++... + .+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 3445544 6899998843444432 222 2233333467999999999876 578999988764 3 3334
Q ss_pred ecCCCCceEEEEEe-CCCeEEEEe-CCCeEEEEeCCC-CeEEEE---ec----------CCCCCEEEEEEeCCCCEEEEE
Q 001042 919 LKGHDAQVSCVRML-SGERVLTAS-HDGTVKMWDVRT-DTCVAT---VG----------RCSSAVLCMEYDDSTGILAAG 982 (1178)
Q Consensus 919 l~~h~~~V~~l~~~-~~~~l~sgs-~dg~V~iwd~~~-~~~~~~---~~----------~~~~~I~~l~~sp~~~~l~sg 982 (1178)
..........++.+ ++..++++. .+|+|.++++.. |..... +. .......++.++|+++++++.
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence 44344555677777 677777776 589999999987 433222 21 123567899999999988876
Q ss_pred e-CCCeEEEEECCCCc--eE--EEEe-cCCccEEEEEEcCC--EE-EEEeCCCcEEEEEcC--CCee--eeEecc----C
Q 001042 983 G-RDAVANIWDIRAGR--QM--HKFL-GHTKWIRSIRMDRD--TV-ITGSDDWTARMWSIS--RGTC--DAVLAC----H 1045 (1178)
Q Consensus 983 s-~dg~I~lwD~~~~~--~~--~~~~-~~~~~v~~l~~~~~--~l-~sgs~dg~I~iwd~~--~~~~--~~~~~~----h 1045 (1178)
. ....|.+|++.... .. ..+. ........++|+++ ++ ++.-.+++|.++++. ++.. +..+.. .
T Consensus 162 dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 241 (345)
T PF10282_consen 162 DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGF 241 (345)
T ss_dssp ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTS
T ss_pred ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccc
Confidence 5 34579999997654 21 2222 34456778888654 54 445567889999988 4422 222221 1
Q ss_pred --CCcEEEEEEecCCCEEEEEe-CCCcEEEEECC--CCceEEEEEecc--cCCcEEEEecCCCEEEEEe-CCCcEEEEEc
Q 001042 1046 --AGPVQCVEYSSSDRGIITGS-SDGLLRFWEND--DGGIKCVKNVTI--HSSAILSINAGDHWLGIGA-ADNSMSLFHR 1117 (1178)
Q Consensus 1046 --~~~I~~l~~spdg~~L~sgs-~Dg~I~iwd~~--~~~~~~~~~~~~--h~~~i~~is~dg~~Lasgs-~Dg~I~iwd~ 1117 (1178)
......++++|||++|.++. .++.|.+|+++ ++.+..+..+.. ....-+.++|+|++|+++. .++.|.+|++
T Consensus 242 ~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 242 TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence 12578899999999987765 56789999993 466666665543 3334466689999999877 5678999987
Q ss_pred C
Q 001042 1118 P 1118 (1178)
Q Consensus 1118 ~ 1118 (1178)
.
T Consensus 322 d 322 (345)
T PF10282_consen 322 D 322 (345)
T ss_dssp E
T ss_pred e
Confidence 5
No 268
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.05 E-value=5.2e-10 Score=124.24 Aligned_cols=279 Identities=18% Similarity=0.317 Sum_probs=185.7
Q ss_pred ceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCC-----ceeeEeecccccceEEE--ec
Q 001042 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRG-----SELRATLKGHTRTVRAI--NS 891 (1178)
Q Consensus 819 ~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~-----~~~~~~l~~h~~~V~~~--s~ 891 (1178)
.+..+.||+..|.+++-. .+.+-+++++.|++|++|.+...+ ..+..+++.|..+|..+ -.
T Consensus 727 rL~nf~GH~~~iRai~Ai------------dNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~ 794 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAI------------DNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA 794 (1034)
T ss_pred eeecccCcHHHhHHHHhc------------ccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee
Confidence 567789999999988765 677889999999999999986332 23557888999999876 44
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEec-----CCCCceEEEEEeCCCeEEEE-eCCCeEEEEeCCCCeEEEEec----
Q 001042 892 DRGKVVSGSDDQSVLVWDKQTSQLLEELK-----GHDAQVSCVRMLSGERVLTA-SHDGTVKMWDVRTDTCVATVG---- 961 (1178)
Q Consensus 892 d~~~l~sgs~dg~I~iwd~~t~~~~~~l~-----~h~~~V~~l~~~~~~~l~sg-s~dg~V~iwd~~~~~~~~~~~---- 961 (1178)
+.+++++ .||.|++||.--|+.+..+. +..+.|.|+.--+...+++| +...+|+++|.+.++....++
T Consensus 795 ~lr~i~S--cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna 872 (1034)
T KOG4190|consen 795 DLRSIAS--CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNA 872 (1034)
T ss_pred ccceeee--ccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccC
Confidence 5555554 57889999987777665332 22334555543344445544 788999999999887655543
Q ss_pred -CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEE-cCCEEEEEeCCCcEEE-EEcCCCee
Q 001042 962 -RCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM-DRDTVITGSDDWTARM-WSISRGTC 1038 (1178)
Q Consensus 962 -~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~-~~~~l~sgs~dg~I~i-wd~~~~~~ 1038 (1178)
+.+..+++++..+.|+++++|-.+|.|.+.|.++|+.+..++.-.-....++- +...++....|.++.+ |..-.|..
T Consensus 873 ~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaapsdq~L~~saldHslaVnWhaldgim 952 (1034)
T KOG4190|consen 873 PGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAAPSDQALAQSALDHSLAVNWHALDGIM 952 (1034)
T ss_pred CCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcCchhHHHHhhcccceeEeeehhcCCee
Confidence 34567899999999999999999999999999999999887665544444443 4557777788888888 88766655
Q ss_pred eeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEE---EEEec--ccCCcEEEE--ecCCCEEEEEeCCCc
Q 001042 1039 DAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKC---VKNVT--IHSSAILSI--NAGDHWLGIGAADNS 1111 (1178)
Q Consensus 1039 ~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~---~~~~~--~h~~~i~~i--s~dg~~Lasgs~Dg~ 1111 (1178)
....+....+..-+ ..-|..++++.....+.+|--. ++... +..+. .-.+..+++ -|-..-+..|++.|.
T Consensus 953 h~q~kpppepahfl--qsvgpSLV~a~~Gn~lgVYad~-a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~ 1029 (1034)
T KOG4190|consen 953 HLQDKPPPEPAHFL--QSVGPSLVTAQNGNILGVYADS-AELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGA 1029 (1034)
T ss_pred eeccCCCCcchhhh--hccCceeEEeccCcEEEEEecc-hhhhhhhhhccccccccCCccceeeeccccchhhccCCCCc
Confidence 54444322221111 1225667777666667777422 11110 11111 112223333 244455556777777
Q ss_pred EEE
Q 001042 1112 MSL 1114 (1178)
Q Consensus 1112 I~i 1114 (1178)
|.+
T Consensus 1030 IaL 1032 (1034)
T KOG4190|consen 1030 IAL 1032 (1034)
T ss_pred eee
Confidence 765
No 269
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.05 E-value=9.4e-09 Score=108.23 Aligned_cols=147 Identities=12% Similarity=0.201 Sum_probs=104.1
Q ss_pred EEEEEeCCCCEEEEEeC----------CCeEEEEECCC-CceEEEEec-CCccEEEEEEcCC--EE--EEEeCCCcEEEE
Q 001042 968 LCMEYDDSTGILAAGGR----------DAVANIWDIRA-GRQMHKFLG-HTKWIRSIRMDRD--TV--ITGSDDWTARMW 1031 (1178)
Q Consensus 968 ~~l~~sp~~~~l~sgs~----------dg~I~lwD~~~-~~~~~~~~~-~~~~v~~l~~~~~--~l--~sgs~dg~I~iw 1031 (1178)
..+.|+++|..|++-.. -|...+|.++. +.....+.- ..++|.+++|+|+ .+ +.|..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 45788888887765443 13345555532 223334432 3457999999654 54 345567899999
Q ss_pred EcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeC---CCcEEEEECCCCceEEEEEecccCCcEEEEecCCCEEEEEeC
Q 001042 1032 SISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSS---DGLLRFWENDDGGIKCVKNVTIHSSAILSINAGDHWLGIGAA 1108 (1178)
Q Consensus 1032 d~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~---Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~Lasgs~ 1108 (1178)
|++ ++.+..+. ...++.+.|+|+|+++++|+. .|.|.+||+++. ..+...........+++|||+++++++.
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~--~~i~~~~~~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK--KKISTFEHSDATDVEWSPDGRYLATATT 163 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC--EEeeccccCcEEEEEEcCCCCEEEEEEe
Confidence 996 66666664 567889999999999999874 467999999976 6666665444445666999999999874
Q ss_pred ------CCcEEEEEcCC
Q 001042 1109 ------DNSMSLFHRPQ 1119 (1178)
Q Consensus 1109 ------Dg~I~iwd~~~ 1119 (1178)
|+.++||+...
T Consensus 164 ~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 164 SPRLRVDNGFKIWSFQG 180 (194)
T ss_pred ccceeccccEEEEEecC
Confidence 78899999863
No 270
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.04 E-value=1.1e-08 Score=107.61 Aligned_cols=128 Identities=9% Similarity=0.193 Sum_probs=90.7
Q ss_pred EEEEEcCC-CeeeeEecc-CCCcEEEEEEecCCCEEEEE--eCCCcEEEEECCCCceEEEEEecccCCcEEEEecCCCEE
Q 001042 1028 ARMWSISR-GTCDAVLAC-HAGPVQCVEYSSSDRGIITG--SSDGLLRFWENDDGGIKCVKNVTIHSSAILSINAGDHWL 1103 (1178)
Q Consensus 1028 I~iwd~~~-~~~~~~~~~-h~~~I~~l~~spdg~~L~sg--s~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~L 1103 (1178)
..+|.++. +.....+.- ..++|.+++|+|+|+.+++. ..++.|.+||++ + ..+..+..+......++|+|+++
T Consensus 39 ~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~--~~i~~~~~~~~n~i~wsP~G~~l 115 (194)
T PF08662_consen 39 FELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-G--KKIFSFGTQPRNTISWSPDGRFL 115 (194)
T ss_pred EEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-c--cEeEeecCCCceEEEECCCCCEE
Confidence 44444422 233344432 35579999999999987544 467899999997 3 55566654444456679999999
Q ss_pred EEEeCC---CcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeC------CCcEEEEEC
Q 001042 1104 GIGAAD---NSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGR------NGLLRLWEA 1174 (1178)
Q Consensus 1104 asgs~D---g~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~------Dg~V~IWdv 1174 (1178)
++|+.+ |.|.+||..+. +.+.... | ..++.++|||||+++++++. |..++||+.
T Consensus 116 ~~~g~~n~~G~l~~wd~~~~---------------~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~ 178 (194)
T PF08662_consen 116 VLAGFGNLNGDLEFWDVRKK---------------KKISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF 178 (194)
T ss_pred EEEEccCCCcEEEEEECCCC---------------EEeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEe
Confidence 998754 67999999733 3333332 2 34789999999999999864 789999998
Q ss_pred C
Q 001042 1175 T 1175 (1178)
Q Consensus 1175 ~ 1175 (1178)
.
T Consensus 179 ~ 179 (194)
T PF08662_consen 179 Q 179 (194)
T ss_pred c
Confidence 5
No 271
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.00 E-value=2.8e-09 Score=133.26 Aligned_cols=195 Identities=18% Similarity=0.325 Sum_probs=151.6
Q ss_pred cccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEE--EecCCCEEEEEeC
Q 001042 824 RGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSD 901 (1178)
Q Consensus 824 ~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~--~s~d~~~l~sgs~ 901 (1178)
+.|-..|.++.-+ |...+.+||+.||.|++|..............|. ..|+. ++.+|+.+..+..
T Consensus 2205 k~~v~~v~r~~sH------------p~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~qGnk~~i~d~ 2271 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSH------------PSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNHQGNKFGIVDG 2271 (2439)
T ss_pred ecccCceeeecCC------------CCCceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcccCCceeeecc
Confidence 3344556666555 6778899999999999999763333332333333 56663 5889999999999
Q ss_pred CCcEEEEECCCCcEEEEecCCCCceEEEEEeCCCeEEEEe---CCCeEEEEeCCCC---eEEEEecCCCCCEEEEEEeCC
Q 001042 902 DQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTAS---HDGTVKMWDVRTD---TCVATVGRCSSAVLCMEYDDS 975 (1178)
Q Consensus 902 dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~~~~~l~sgs---~dg~V~iwd~~~~---~~~~~~~~~~~~I~~l~~sp~ 975 (1178)
||.+.+|.+. .+.....+.|.....+..|.. ..+++++ .++.+.+||..-. ..+. ..|.+.++++++-|.
T Consensus 2272 dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~-s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~ 2347 (2439)
T KOG1064|consen 2272 DGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG-SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPK 2347 (2439)
T ss_pred CCceeecccC-CcceeccccCCccccceeeee-hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCc
Confidence 9999999987 667777888999999988875 5566554 4789999997432 2333 689999999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEcCCEEEEEeCCCcEEEEEcCCCeeeeEec
Q 001042 976 TGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLA 1043 (1178)
Q Consensus 976 ~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 1043 (1178)
.+.+++||.+|.|++||++..+.++.++. +. ..+++++|+..|.++||++..-..+.++.
T Consensus 2348 ~qllisggr~G~v~l~D~rqrql~h~~~~-------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2348 HQLLISGGRKGEVCLFDIRQRQLRHTFQA-------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred ceEEEecCCcCcEEEeehHHHHHHHHhhh-------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 99999999999999999999888777754 22 45699999999999999998876666654
No 272
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.99 E-value=2.3e-08 Score=114.78 Aligned_cols=273 Identities=14% Similarity=0.193 Sum_probs=186.7
Q ss_pred cceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCC-------------ceeeEeecccccceEE--EecC
Q 001042 828 GAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRG-------------SELRATLKGHTRTVRA--INSD 892 (1178)
Q Consensus 828 ~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~-------------~~~~~~l~~h~~~V~~--~s~d 892 (1178)
....|++|. .+..++|+||.||.+++-.+.+.. ....+++.||+..|.- |+.+
T Consensus 15 vkL~c~~WN------------ke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~ 82 (1189)
T KOG2041|consen 15 VKLHCAEWN------------KESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNEN 82 (1189)
T ss_pred ceEEEEEEc------------ccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccc
Confidence 445677776 889999999999999999765321 1234678899998884 5667
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEe--cCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEE
Q 001042 893 RGKVVSGSDDQSVLVWDKQTSQLLEEL--KGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLC 969 (1178)
Q Consensus 893 ~~~l~sgs~dg~I~iwd~~t~~~~~~l--~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~ 969 (1178)
.+.|-++..+|.|.+|-+-.|.-...+ ....+.|.+++|+ +|..++....||.|.+=.++..+.... .-.......
T Consensus 83 ~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgK-eLkg~~l~h 161 (1189)
T KOG2041|consen 83 NQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGK-ELKGQLLAH 161 (1189)
T ss_pred cccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecch-hcchheccc
Confidence 788999999999999998877544333 2345678999999 899999999999998877765443211 111233457
Q ss_pred EEEeCCCCEEEEEeCCCeEEEEECCCCc-------eEEE----EecCCccEEEEEEc----------CCEEEEEeCCCcE
Q 001042 970 MEYDDSTGILAAGGRDAVANIWDIRAGR-------QMHK----FLGHTKWIRSIRMD----------RDTVITGSDDWTA 1028 (1178)
Q Consensus 970 l~~sp~~~~l~sgs~dg~I~lwD~~~~~-------~~~~----~~~~~~~v~~l~~~----------~~~l~sgs~dg~I 1028 (1178)
+.|++|.+.++.+-.+|.+.+||....- +... +......+..+.|. .-.++++..+|.+
T Consensus 162 v~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~ 241 (1189)
T KOG2041|consen 162 VLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRM 241 (1189)
T ss_pred eeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCcee
Confidence 8999999999999999999999976421 1111 11222345666662 1279999999999
Q ss_pred EEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCC---------cEEEEECCCCceEEEEEecccCCcEEEEecC
Q 001042 1029 RMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDG---------LLRFWENDDGGIKCVKNVTIHSSAILSINAG 1099 (1178)
Q Consensus 1029 ~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg---------~I~iwd~~~~~~~~~~~~~~h~~~i~~is~d 1099 (1178)
.+-.-.+......+. ..-.+....|+++|..|+.+|.|. .|.++..- | ..+.+++.....|++++..
T Consensus 242 QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~-G--~i~gtlkvpg~~It~lsWE 317 (1189)
T KOG2041|consen 242 QIMRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY-G--HIVGTLKVPGSCITGLSWE 317 (1189)
T ss_pred hhhhhcCCCCCeEEe-cccEeecceecCCCcEEEEccCcccccCccccceEEEeccc-h--hheEEEecCCceeeeeEEc
Confidence 887655443333333 235788999999999999988643 45555432 3 3455566666677777654
Q ss_pred CC--EEEEEeCCCcEEEEEcC
Q 001042 1100 DH--WLGIGAADNSMSLFHRP 1118 (1178)
Q Consensus 1100 g~--~Lasgs~Dg~I~iwd~~ 1118 (1178)
|. .+|. ..|+.|.+-++.
T Consensus 318 g~gLriA~-AvdsfiyfanIR 337 (1189)
T KOG2041|consen 318 GTGLRIAI-AVDSFIYFANIR 337 (1189)
T ss_pred CCceEEEE-EecceEEEEeec
Confidence 43 3333 246666665554
No 273
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.98 E-value=1e-07 Score=109.05 Aligned_cols=185 Identities=12% Similarity=0.216 Sum_probs=152.5
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCcEEEEecC---CCCceEEEEEe---------------------CCCeEEEEeCCCeE
Q 001042 891 SDRGKVVSGSDDQSVLVWDKQTSQLLEELKG---HDAQVSCVRML---------------------SGERVLTASHDGTV 946 (1178)
Q Consensus 891 ~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~---h~~~V~~l~~~---------------------~~~~l~sgs~dg~V 946 (1178)
+...++|....||.+++||...++....+.. -++..++..|. +...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4567899999999999999999887766642 23344444441 23457888899999
Q ss_pred EEEeCCCCeEEEEec--CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEcCC--EEEEE
Q 001042 947 KMWDVRTDTCVATVG--RCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD--TVITG 1022 (1178)
Q Consensus 947 ~iwd~~~~~~~~~~~--~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~--~l~sg 1022 (1178)
.+|++..|+....+. .|.+.|.++.++.+-..|.+++.|+.+..|+...++.++.+......+.++++.++ .++++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~a 162 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTA 162 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEec
Confidence 999999999877764 58899999999999999999999999999999999999999999999999988666 67666
Q ss_pred eCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecC-----CCEEEEEe-CCCcEEEEECCC
Q 001042 1023 SDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSS-----DRGIITGS-SDGLLRFWENDD 1077 (1178)
Q Consensus 1023 s~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd-----g~~L~sgs-~Dg~I~iwd~~~ 1077 (1178)
+ +.|.+||+++++.+.++.+|.++|.++.|.-+ |.+++++. .+.-+.+|-+..
T Consensus 163 s--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 163 S--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred c--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 5 57999999999999999999999999999876 67766543 455577887654
No 274
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.98 E-value=2.6e-09 Score=133.56 Aligned_cols=187 Identities=15% Similarity=0.274 Sum_probs=150.5
Q ss_pred CCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecC-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce
Q 001042 921 GHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGR-CSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQ 998 (1178)
Q Consensus 921 ~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~-~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~ 998 (1178)
.+-..|.++.-+ ...+.++|+.||.|++|....++.+..+.. ....|+.+.|+.+|+.+..+..||.+.+|.+. .++
T Consensus 2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~ 2284 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKP 2284 (2439)
T ss_pred cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccc
Confidence 344556666655 456788999999999999988887766542 34789999999999999999999999999987 777
Q ss_pred EEEEecCCccEEEEEEcCCEEEEEe---CCCcEEEEEcCCC---eeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEE
Q 001042 999 MHKFLGHTKWIRSIRMDRDTVITGS---DDWTARMWSISRG---TCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRF 1072 (1178)
Q Consensus 999 ~~~~~~~~~~v~~l~~~~~~l~sgs---~dg~I~iwd~~~~---~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~i 1072 (1178)
....+.|......+.|-+..+++++ .++.+.+||.-.. .++. .+|.+.++++++.|..+.+++||.+|.|++
T Consensus 2285 ~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l 2362 (2439)
T KOG1064|consen 2285 YTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCL 2362 (2439)
T ss_pred eeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcEEE
Confidence 7888899999999999777777765 5788999996432 2233 789999999999999999999999999999
Q ss_pred EECCCCceEEEEEecccCCcEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 001042 1073 WENDDGGIKCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRPQE 1120 (1178)
Q Consensus 1073 wd~~~~~~~~~~~~~~h~~~i~~is~dg~~Lasgs~Dg~I~iwd~~~~ 1120 (1178)
||++..+ ....++. +. ...++++|+..|.|+||++...
T Consensus 2363 ~D~rqrq--l~h~~~~-------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2363 FDIRQRQ--LRHTFQA-------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred eehHHHH--HHHHhhh-------hh-hhheeeccCcccceEEEEcccc
Confidence 9998762 2222221 33 5678999999999999999753
No 275
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.98 E-value=1e-07 Score=114.05 Aligned_cols=202 Identities=12% Similarity=0.102 Sum_probs=135.8
Q ss_pred CcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCC---CeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCE
Q 001042 903 QSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHD---GTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGI 978 (1178)
Q Consensus 903 g~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~d---g~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~ 978 (1178)
..|.++|...++ ...+..+...+....|+ +++.++.++.+ ..|++||+.+++.... ..+...+.+++|+|||+.
T Consensus 170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCE
Confidence 368888876443 45555677778888999 77778776643 4799999998865433 234456677999999997
Q ss_pred EEEE-eCCC--eEEEEECCCCceEEEEecCCccEEEEEE--cCCEEEEEeC-CC--cEEEEEcCCCeeeeEeccCCCcEE
Q 001042 979 LAAG-GRDA--VANIWDIRAGRQMHKFLGHTKWIRSIRM--DRDTVITGSD-DW--TARMWSISRGTCDAVLACHAGPVQ 1050 (1178)
Q Consensus 979 l~sg-s~dg--~I~lwD~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sgs~-dg--~I~iwd~~~~~~~~~~~~h~~~I~ 1050 (1178)
|+.. +.++ .|++||+.+++.. .+..+........| +++.++..+. ++ .|+++|+.+++. ..+..+...+.
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~ 325 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNA 325 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCcc
Confidence 7654 3333 5899999877543 33334333444556 5567766554 33 588888877654 33444556677
Q ss_pred EEEEecCCCEEEEEeCCC---cEEEEECCCCceEEEEEecccCCcEEEEecCCCEEEEEeCCC
Q 001042 1051 CVEYSSSDRGIITGSSDG---LLRFWENDDGGIKCVKNVTIHSSAILSINAGDHWLGIGAADN 1110 (1178)
Q Consensus 1051 ~l~~spdg~~L~sgs~Dg---~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~Lasgs~Dg 1110 (1178)
...|+|+|++++.++.++ .|.+||+.++....+.. .....-.+++|+|++|+.++.++
T Consensus 326 ~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~--~~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 326 SPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTD--TGLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred CeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccC--CCCCCCceECCCCCEEEEEEeCC
Confidence 889999999999888776 78999998864333321 11122236789999988877765
No 276
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.97 E-value=4e-07 Score=107.83 Aligned_cols=301 Identities=12% Similarity=0.057 Sum_probs=179.4
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCceeeEeeccccc--------ceE-EEecCCCEEEEEeCCCcEEEEECCCCcEEEEecC
Q 001042 851 AGFFISGSTDCLVKIWDPSLRGSELRATLKGHTR--------TVR-AINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKG 921 (1178)
Q Consensus 851 ~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~--------~V~-~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~ 921 (1178)
+..+++++.+|.+.-+|...........+..... .+. ....++..++.++.+|.+..+|.++|+.+.....
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~ 148 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKV 148 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccC
Confidence 4566666677777777765222222222222100 110 1223467788888999999999999999887764
Q ss_pred CCCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEE-EEEeC--CCCEEEEEeCCCeEEEEECCCCce
Q 001042 922 HDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLC-MEYDD--STGILAAGGRDAVANIWDIRAGRQ 998 (1178)
Q Consensus 922 h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~-l~~sp--~~~~l~sgs~dg~I~lwD~~~~~~ 998 (1178)
... +.+--...++.++.++.+|.+..+|.++|+.+............ ..-+| .+..++.++.+|.+..+|..+|+.
T Consensus 149 ~~~-~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~ 227 (394)
T PRK11138 149 AGE-ALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQL 227 (394)
T ss_pred CCc-eecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChh
Confidence 432 22211113567778888999999999999988877542111100 00111 234577788899999999999987
Q ss_pred EEEEecCCc----c-------EEEEEEcCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCC
Q 001042 999 MHKFLGHTK----W-------IRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSD 1067 (1178)
Q Consensus 999 ~~~~~~~~~----~-------v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~D 1067 (1178)
+........ . ..+-...++.++.++.+|.+..+|..+|+.+..... +....+.. .+..++.++.+
T Consensus 228 ~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~~--~~~~vy~~~~~ 303 (394)
T PRK11138 228 IWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFAV--DGGRIYLVDQN 303 (394)
T ss_pred hheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcEE--ECCEEEEEcCC
Confidence 665432110 0 012223466788888899999999999987765432 11122222 36678888899
Q ss_pred CcEEEEECCCCceEEEEEecccCCcEEEEecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCccc
Q 001042 1068 GLLRFWENDDGGIKCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAV 1147 (1178)
Q Consensus 1068 g~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~ 1147 (1178)
|.+..+|..+|+..-......+. ...+....+..++.++.||.+...|..+++ .+ |+. .-....
T Consensus 304 g~l~ald~~tG~~~W~~~~~~~~-~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~---------~~--~~~----~~~~~~ 367 (394)
T PRK11138 304 DRVYALDTRGGVELWSQSDLLHR-LLTAPVLYNGYLVVGDSEGYLHWINREDGR---------FV--AQQ----KVDSSG 367 (394)
T ss_pred CeEEEEECCCCcEEEcccccCCC-cccCCEEECCEEEEEeCCCEEEEEECCCCC---------EE--EEE----EcCCCc
Confidence 99999999998532211111111 111111236678889999999999987432 21 111 101111
Q ss_pred EE-EEEEcCCCCEEEEEeCCCcEEEEEC
Q 001042 1148 VR-CIASDLERKRICSGGRNGLLRLWEA 1174 (1178)
Q Consensus 1148 V~-~lafspdg~~Las~s~Dg~V~IWdv 1174 (1178)
+. .-.+ .+..|+.++.||.|..++.
T Consensus 368 ~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 368 FLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred ceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 11 1112 2457888899999988765
No 277
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.97 E-value=5.5e-08 Score=101.91 Aligned_cols=241 Identities=17% Similarity=0.210 Sum_probs=166.6
Q ss_pred cccceEEEEeeeccceeccccccCCCC-EEEEEeCCCcEEEEcCCCCCceeeEeeccc---ccceE-----EEecCCCEE
Q 001042 826 HAGAITALHCVTKREVWDLVGDREDAG-FFISGSTDCLVKIWDPSLRGSELRATLKGH---TRTVR-----AINSDRGKV 896 (1178)
Q Consensus 826 H~~~V~~l~fs~~~~~~~~~~~s~d~~-~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h---~~~V~-----~~s~d~~~l 896 (1178)
-+..+..+.|+... .+|. .++-+..+|.|.++..+ ..+....+.+- .-.+. .|++.+..+
T Consensus 68 dts~~~dm~w~~~~---------~~g~~~l~~a~a~G~i~~~r~~--~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i 136 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRE---------TDGDFNLLDAHARGQIQLYRND--EDESSVHLRGLSSKKISVVEALSLDISTSGTKI 136 (339)
T ss_pred cccccceeeeeecc---------CCccceeeeccccceEEEEeec--cceeeeeecccchhhhhheeeeEEEeeccCceE
Confidence 45567777776311 3344 56677788999999855 22222333322 11222 357788889
Q ss_pred EEEeCCCcEEEEECCCCcEEE--EecCCCCceEEEEEe--CCCeEEEEeCCCeEEEEeCC-CCeEEEE-ecCCCCCEEEE
Q 001042 897 VSGSDDQSVLVWDKQTSQLLE--ELKGHDAQVSCVRML--SGERVLTASHDGTVKMWDVR-TDTCVAT-VGRCSSAVLCM 970 (1178)
Q Consensus 897 ~sgs~dg~I~iwd~~t~~~~~--~l~~h~~~V~~l~~~--~~~~l~sgs~dg~V~iwd~~-~~~~~~~-~~~~~~~I~~l 970 (1178)
+++..+|.+.+-+........ .++.|.-..+...|+ +.+.+.+|+.||.+..||++ .++.+.. .+.|...|.++
T Consensus 137 ~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI 216 (339)
T KOG0280|consen 137 FVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSI 216 (339)
T ss_pred EEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEE
Confidence 999999999976665554443 789999999999998 57889999999999999999 4444443 45688899999
Q ss_pred EEeC-CCCEEEEEeCCCeEEEEECCC-CceEEEEecCCccEEEEEEcCC---EEEEEeCCCcEEEEEcCCCe-----eee
Q 001042 971 EYDD-STGILAAGGRDAVANIWDIRA-GRQMHKFLGHTKWIRSIRMDRD---TVITGSDDWTARMWSISRGT-----CDA 1040 (1178)
Q Consensus 971 ~~sp-~~~~l~sgs~dg~I~lwD~~~-~~~~~~~~~~~~~v~~l~~~~~---~l~sgs~dg~I~iwd~~~~~-----~~~ 1040 (1178)
.-+| .+.++++|+.|-.|++||.|+ ++++..- ...+.|+.+...+. .++.++.-.-.+|-+.+.+. ...
T Consensus 217 ~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~-~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~ 295 (339)
T KOG0280|consen 217 YSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA-KVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLP 295 (339)
T ss_pred ecCCCCCceEEEeccccceeeeehhcccCccccC-ccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeee
Confidence 8887 678999999999999999995 5665543 34478888888664 33444444446666665542 334
Q ss_pred EeccCCCcEEEEEEecCCCEEEEEe-CCCcEE-EEECCCC
Q 001042 1041 VLACHAGPVQCVEYSSSDRGIITGS-SDGLLR-FWENDDG 1078 (1178)
Q Consensus 1041 ~~~~h~~~I~~l~~spdg~~L~sgs-~Dg~I~-iwd~~~~ 1078 (1178)
..+.|.+-...-.|......++|++ .|+.++ +|-.-++
T Consensus 296 s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 296 SDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred ccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 4556777777777765556788876 566655 7755544
No 278
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.96 E-value=1.1e-07 Score=110.73 Aligned_cols=375 Identities=11% Similarity=0.114 Sum_probs=227.9
Q ss_pred CCCCcc-cccCCcceEEEEecCCC----------C--cccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEE
Q 001042 758 DQQPAE-ASGIGRSWVQSMFSREA----------S--SRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRI 822 (1178)
Q Consensus 758 ~~~~~~-~~gh~~~i~~~aFSpdg----------~--~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 822 (1178)
..|.+. +..|...|+.+.|+|-. . .+|++... |.+||...+. .+..
T Consensus 44 s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s-------------------~~~~ 104 (1062)
T KOG1912|consen 44 SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLAS-------------------VINW 104 (1062)
T ss_pred hhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhh-------------------hhhh
Confidence 344444 45566677777776622 1 23443333 9999999877 4556
Q ss_pred ecccccceEEEEeeeccceeccccccCCC-CEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEEe---cCCCEEEE
Q 001042 823 IRGHAGAITALHCVTKREVWDLVGDREDA-GFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAIN---SDRGKVVS 898 (1178)
Q Consensus 823 l~gH~~~V~~l~fs~~~~~~~~~~~s~d~-~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s---~d~~~l~s 898 (1178)
+..|..+|..++|-+.+ ++. .+|+.-....++.+|+.. .++.............||. .|.+.+..
T Consensus 105 l~~~~~~~qdl~W~~~r---------d~Srd~LlaIh~ss~lvLwntd--tG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~ 173 (1062)
T KOG1912|consen 105 LSHSNDSVQDLCWVPAR---------DDSRDVLLAIHGSSTLVLWNTD--TGEKFWKYDYSHEILSCFRVDPFDSRHFCV 173 (1062)
T ss_pred hcCCCcchhheeeeecc---------CcchheeEEecCCcEEEEEEcc--CCceeeccccCCcceeeeeeCCCCcceEEE
Confidence 88899999999998532 445 567777778899999966 3333333333333444553 35566666
Q ss_pred EeCCCcEEEEECCC-------CcEEEEecCCCC----------------ce-------EE--EEEeC-CCeEEEEeCCCe
Q 001042 899 GSDDQSVLVWDKQT-------SQLLEELKGHDA----------------QV-------SC--VRMLS-GERVLTASHDGT 945 (1178)
Q Consensus 899 gs~dg~I~iwd~~t-------~~~~~~l~~h~~----------------~V-------~~--l~~~~-~~~l~sgs~dg~ 945 (1178)
-+..|.+.+-+.-. |+..+.-..|.+ .- .| ++|++ -..++-......
T Consensus 174 l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~pre 253 (1062)
T KOG1912|consen 174 LGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRE 253 (1062)
T ss_pred EccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccc
Confidence 66677776665421 232222222222 00 11 23342 222334445677
Q ss_pred EEEEeCCCCeEEEEecCCCCCEEEEEEeCCC--CEEEEEeCCCeEEEEECCCCceEEE-----Ee-cCCccEEEEEE---
Q 001042 946 VKMWDVRTDTCVATVGRCSSAVLCMEYDDST--GILAAGGRDAVANIWDIRAGRQMHK-----FL-GHTKWIRSIRM--- 1014 (1178)
Q Consensus 946 V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~--~~l~sgs~dg~I~lwD~~~~~~~~~-----~~-~~~~~v~~l~~--- 1014 (1178)
+.++|++-..++....-..+.+.-+.+-|++ ..++++..||.+.+|-.+......+ +. .....+.++..
T Consensus 254 llv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~ 333 (1062)
T KOG1912|consen 254 LLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEE 333 (1062)
T ss_pred eEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechh
Confidence 8999999888888876666767777777755 4699999999999997654211111 00 00112222221
Q ss_pred -----------cCCEEEEEeCCCcEEEEEcCCCeeee-------------------------------EeccCCCcEEEE
Q 001042 1015 -----------DRDTVITGSDDWTARMWSISRGTCDA-------------------------------VLACHAGPVQCV 1052 (1178)
Q Consensus 1015 -----------~~~~l~sgs~dg~I~iwd~~~~~~~~-------------------------------~~~~h~~~I~~l 1052 (1178)
.++.++.--.+|.+.+|.+++|+.-. ...+|....++.
T Consensus 334 ~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~ 413 (1062)
T KOG1912|consen 334 FRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCV 413 (1062)
T ss_pred cccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceee
Confidence 23445555567888888887543210 011344444444
Q ss_pred EEec-----------CC-------CEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEEecCCC-EEEE--------
Q 001042 1053 EYSS-----------SD-------RGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSINAGDH-WLGI-------- 1105 (1178)
Q Consensus 1053 ~~sp-----------dg-------~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~-~Las-------- 1105 (1178)
...| .| ..++.|...|+|.++|+.++ .....+..|+..|.++...|. .+++
T Consensus 414 ~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~--~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~ 491 (1062)
T KOG1912|consen 414 RMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTN--AVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNS 491 (1062)
T ss_pred ecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecch--hhhhhhcccccceeeeeeccceeEEEeeeccccc
Confidence 4332 22 24788999999999999998 566677788888877754443 2333
Q ss_pred --EeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001042 1106 --GAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATI 1176 (1178)
Q Consensus 1106 --gs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~t 1176 (1178)
|+.-+.+.+-|+.++.-..|- ...+....+|+.+..|..|++|+..=.|.-+.+||+.+
T Consensus 492 ~sg~vrN~l~vtdLrtGlsk~fR------------~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt 552 (1062)
T KOG1912|consen 492 ASGGVRNDLVVTDLRTGLSKRFR------------GLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKT 552 (1062)
T ss_pred cccceeeeEEEEEcccccccccc------------cCCCCCcCcceeeeecccCceEEEEecccchHHHhhcc
Confidence 222345667777754322211 11234467899999999999999999999999999864
No 279
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.94 E-value=2.5e-07 Score=106.55 Aligned_cols=290 Identities=12% Similarity=0.125 Sum_probs=190.0
Q ss_pred CcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceeccc
Q 001042 768 GRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLV 845 (1178)
Q Consensus 768 ~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~ 845 (1178)
+....|++|.....++|+|+.| ++|-.+++......... ......-..-+++.||++.|.-+.|.
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g----laa~snLsmNQtLeGH~~sV~vvTWN--------- 80 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSG----LAAASNLSMNQTLEGHNASVMVVTWN--------- 80 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccc----cccccccchhhhhccCcceEEEEEec---------
Confidence 3456788999999999999999 77777666543221111 11122223557899999999999997
Q ss_pred cccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceE--EEecCCCEEEEEeCCCcEEEEECCCCcEE-EEecCC
Q 001042 846 GDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKVVSGSDDQSVLVWDKQTSQLL-EELKGH 922 (1178)
Q Consensus 846 ~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~--~~s~d~~~l~sgs~dg~I~iwd~~t~~~~-~~l~~h 922 (1178)
.+.+.|-|...+|.|.+|-+-.+.......-....+.|. +|+.||..++..-.||.|.+=.++..+.- +.++
T Consensus 81 ---e~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLk-- 155 (1189)
T KOG2041|consen 81 ---ENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELK-- 155 (1189)
T ss_pred ---cccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcc--
Confidence 778888899999999999875332222112222333444 56789999999999999988776643321 1222
Q ss_pred CCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCC-------eEEEE----ecCCCCCEEEEEEe--------CCCCEEEEE
Q 001042 923 DAQVSCVRML-SGERVLTASHDGTVKMWDVRTD-------TCVAT----VGRCSSAVLCMEYD--------DSTGILAAG 982 (1178)
Q Consensus 923 ~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~-------~~~~~----~~~~~~~I~~l~~s--------p~~~~l~sg 982 (1178)
......+.|+ +...++.+-.+|.+.++|.... .+... +......|-.+.|. |+...++++
T Consensus 156 g~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavc 235 (1189)
T KOG2041|consen 156 GQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVC 235 (1189)
T ss_pred hheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEE
Confidence 2234467788 5666777788899999997543 12111 11222345566663 477789999
Q ss_pred eCCCeEEEEECCCCceEEEEecCCccEEEEEEc--CCEEEEEeCC---------CcEEEEEcCCCeeeeEeccCCCcEEE
Q 001042 983 GRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMD--RDTVITGSDD---------WTARMWSISRGTCDAVLACHAGPVQC 1051 (1178)
Q Consensus 983 s~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sgs~d---------g~I~iwd~~~~~~~~~~~~h~~~I~~ 1051 (1178)
..+|.+.+..-.+......+ ...-.+....|+ |..+++++.+ ..|.+|. .-|+.+.+++.....|++
T Consensus 236 y~nGr~QiMR~eND~~Pvv~-dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~ 313 (1189)
T KOG2041|consen 236 YANGRMQIMRSENDPEPVVV-DTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITG 313 (1189)
T ss_pred EcCceehhhhhcCCCCCeEE-ecccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeee
Confidence 99998887654332211111 222456677774 4467766643 2455555 457788888888889999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCC
Q 001042 1052 VEYSSSDRGIITGSSDGLLRFWENDDG 1078 (1178)
Q Consensus 1052 l~~spdg~~L~sgs~Dg~I~iwd~~~~ 1078 (1178)
++|-..|-.++.+ .|+.|.+=+++..
T Consensus 314 lsWEg~gLriA~A-vdsfiyfanIRP~ 339 (1189)
T KOG2041|consen 314 LSWEGTGLRIAIA-VDSFIYFANIRPE 339 (1189)
T ss_pred eEEcCCceEEEEE-ecceEEEEeeccc
Confidence 9999888777766 5888888777653
No 280
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.94 E-value=2.4e-07 Score=111.21 Aligned_cols=209 Identities=11% Similarity=0.067 Sum_probs=135.4
Q ss_pred cEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCC---CeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEE
Q 001042 904 SVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHD---GTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGIL 979 (1178)
Q Consensus 904 ~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~d---g~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l 979 (1178)
.|.++|.+.++ ...+..+...+....|+ +++.++..+.+ ..|.+||+.+++... +....+.+...+|+|||+.+
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence 47788877554 35555677788999999 77778766543 469999998886543 32334445678999999988
Q ss_pred EE-EeCCC--eEEEEECCCCceEEEEecCCccEEEEEEc--CCEEEEEeC-CC--cEEEEEcCCCeeeeEeccCCCcEEE
Q 001042 980 AA-GGRDA--VANIWDIRAGRQMHKFLGHTKWIRSIRMD--RDTVITGSD-DW--TARMWSISRGTCDAVLACHAGPVQC 1051 (1178)
Q Consensus 980 ~s-gs~dg--~I~lwD~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sgs~-dg--~I~iwd~~~~~~~~~~~~h~~~I~~ 1051 (1178)
+. .+.+| .|++||+.+++.. .+..+........|+ ++.++..+. +| .|+++|+.+++..... ........
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~~~~~~ 335 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FVGNYNAR 335 (430)
T ss_pred EEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCCccc
Confidence 74 44444 6888999887653 344444445556674 456655543 33 5777888777643322 12223445
Q ss_pred EEEecCCCEEEEEeCC-C--cEEEEECCCCceEEEEEecccCCcEEEEecCCCEEEEEeCC-C--cEEEEEcC
Q 001042 1052 VEYSSSDRGIITGSSD-G--LLRFWENDDGGIKCVKNVTIHSSAILSINAGDHWLGIGAAD-N--SMSLFHRP 1118 (1178)
Q Consensus 1052 l~~spdg~~L~sgs~D-g--~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~Lasgs~D-g--~I~iwd~~ 1118 (1178)
..|+|+|+.++..+.+ + .|.+||+.+++...+.. .....-.+++|||++++..+.+ | .+.+++..
T Consensus 336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~--~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTD--TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccC--CCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 7899999999877643 3 58889998886444332 1122223679999999877654 3 35555653
No 281
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.94 E-value=1.6e-08 Score=107.76 Aligned_cols=245 Identities=17% Similarity=0.304 Sum_probs=179.7
Q ss_pred EEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCC-CCeEEEEe-cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 001042 915 LLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVR-TDTCVATV-GRCSSAVLCMEYDDSTGILAAGGRDAVANIW 991 (1178)
Q Consensus 915 ~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~-~~~~~~~~-~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lw 991 (1178)
.+..++||.+.+++...- ...-+++.+.|.++++|--+ .++.-..+ .....+++++.+.++...|++|-.+|++.-+
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtef 95 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEF 95 (404)
T ss_pred hhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEE
Confidence 345677888888876655 56679999999999999643 34433333 2346789999999999999999999999988
Q ss_pred ECC----CCceEEEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEe
Q 001042 992 DIR----AGRQMHKFLGHTKWIRSIRMD--RDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGS 1065 (1178)
Q Consensus 992 D~~----~~~~~~~~~~~~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs 1065 (1178)
.+. .....+.+..|...+..+-++ +..+++.+.|..+.---.+.+..+..+.- ...-+++.+.-. +...|.
T Consensus 96 s~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~--~~fvGd 172 (404)
T KOG1409|consen 96 ALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDAL--YAFVGD 172 (404)
T ss_pred EhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceeeE--EEEecc
Confidence 764 334456677899999999884 56889998887775444444443322210 111122222222 555666
Q ss_pred CCCcEEEEECCCCceEEEEEecccCCcEEEEe--cCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCC
Q 001042 1066 SDGLLRFWENDDGGIKCVKNVTIHSSAILSIN--AGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQK 1143 (1178)
Q Consensus 1066 ~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is--~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~ 1143 (1178)
..|.|..-.+.......+.++.+|...+.+.+ +....|.+|..|..+.+||+...+ .....+.+
T Consensus 173 ~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~--------------g~~~el~g 238 (404)
T KOG1409|consen 173 HSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK--------------GTAYELQG 238 (404)
T ss_pred cccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCc--------------ceeeeecc
Confidence 77777777766666678889999999998885 667899999999999999997432 23445678
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001042 1144 TVAVVRCIASDLERKRICSGGRNGLLRLWEATI 1176 (1178)
Q Consensus 1144 h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~t 1176 (1178)
|.+.|..+...+--+.|.+++.||.|.+|+.+.
T Consensus 239 h~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 239 HNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred chhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 999999999988899999999999999999864
No 282
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=2.2e-07 Score=104.67 Aligned_cols=307 Identities=12% Similarity=0.153 Sum_probs=192.0
Q ss_pred EEecCCCCcccccccc-eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceeccccccCCCC
Q 001042 774 SMFSREASSRSHSFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAG 852 (1178)
Q Consensus 774 ~aFSpdg~~las~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~ 852 (1178)
+.|||.|++|++--.. |.+|--.+-. .++.+. |. .|.-+.|| |..+
T Consensus 216 v~wSP~GTYL~t~Hk~GI~lWGG~~f~-------------------r~~RF~-Hp-~Vq~idfS------------P~Ek 262 (698)
T KOG2314|consen 216 VRWSPKGTYLVTFHKQGIALWGGESFD-------------------RIQRFY-HP-GVQFIDFS------------PNEK 262 (698)
T ss_pred EEecCCceEEEEEeccceeeecCccHH-------------------HHHhcc-CC-CceeeecC------------Cccc
Confidence 5899999999998777 9999544222 233332 43 36666666 8999
Q ss_pred EEEEEeC-----------CCcEEEEcCCCCCceeeEeeccc-----ccceEEEecCCCEEEEEeCCCcEEEEECCCCcEE
Q 001042 853 FFISGST-----------DCLVKIWDPSLRGSELRATLKGH-----TRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLL 916 (1178)
Q Consensus 853 ~Lasgs~-----------Dg~I~iWd~~~~~~~~~~~l~~h-----~~~V~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~ 916 (1178)
+|+|-|. ...++|||+. ++...+.+... .-++..+|.|++++|.-.. ..|.||+..+..++
T Consensus 263 YLVT~s~~p~~~~~~d~e~~~l~IWDI~--tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~ll 339 (698)
T KOG2314|consen 263 YLVTYSPEPIIVEEDDNEGQQLIIWDIA--TGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLL 339 (698)
T ss_pred eEEEecCCccccCcccCCCceEEEEEcc--ccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeee
Confidence 9998654 1479999987 44444444431 2245567999999998777 46899998765444
Q ss_pred EEecCCCCceEEEEEeCCCeEEE-EeC-----CCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEe-------
Q 001042 917 EELKGHDAQVSCVRMLSGERVLT-ASH-----DGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGG------- 983 (1178)
Q Consensus 917 ~~l~~h~~~V~~l~~~~~~~l~s-gs~-----dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs------- 983 (1178)
..-.-.-..|....|++...+++ -.. -..+.+..+.+++.+++-..++-.=..+.|-.+|.+|+.--
T Consensus 340 d~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~ 419 (698)
T KOG2314|consen 340 DKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSK 419 (698)
T ss_pred cccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeecccc
Confidence 32223345677788886544332 211 23566677777776666554444445577777888876532
Q ss_pred ---CCCeEEEEECCCCceEEEEecCCccEEEEEEc--CCEEEEEe---CCCcEEEEEcCC-C---eeeeEeccCCCcEEE
Q 001042 984 ---RDAVANIWDIRAGRQMHKFLGHTKWIRSIRMD--RDTVITGS---DDWTARMWSISR-G---TCDAVLACHAGPVQC 1051 (1178)
Q Consensus 984 ---~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sgs---~dg~I~iwd~~~-~---~~~~~~~~h~~~I~~ 1051 (1178)
.-..+.|+.++....-.....-...|...+|. |+.+++-+ ...++.+|.+++ . +.+..+. ....+.
T Consensus 420 ~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~ 497 (698)
T KOG2314|consen 420 VKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANT 497 (698)
T ss_pred ccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccce
Confidence 11234555555444333333455677888885 44444433 245688888873 2 2233333 345788
Q ss_pred EEEecCCCEEEEEe---CCCcEEEEECCCCceEEEEEecccCC-cEEEEecCCCEEEEEeC------CCcEEEEEcCC
Q 001042 1052 VEYSSSDRGIITGS---SDGLLRFWENDDGGIKCVKNVTIHSS-AILSINAGDHWLGIGAA------DNSMSLFHRPQ 1119 (1178)
Q Consensus 1052 l~~spdg~~L~sgs---~Dg~I~iwd~~~~~~~~~~~~~~h~~-~i~~is~dg~~Lasgs~------Dg~I~iwd~~~ 1119 (1178)
+.|+|.|++++.+. ..|.+.++|.+.......... .|.. .-..+.|.|+|+++++. |..-++|+.+.
T Consensus 498 vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~-eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 498 VFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASP-EHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred EEEcCCCcEEEEEEecccccceEEEecchhhhhhccCc-cccccccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence 99999999988764 578899999885322222222 2322 22445899999999876 45567888764
No 283
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.93 E-value=1.6e-07 Score=112.62 Aligned_cols=218 Identities=15% Similarity=0.058 Sum_probs=135.6
Q ss_pred EEecccccceEEEEeeeccceeccccccCCCCEEEEEeCC---CcEEEEcCCCCCceeeEeecccccceEEEecCCCEEE
Q 001042 821 RIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTD---CLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVV 897 (1178)
Q Consensus 821 ~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~D---g~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~ 897 (1178)
+.+..|...+...+|+ |||+.|+..+.+ ..|.+||+.......+....++.. ..+|+|||+.++
T Consensus 192 ~~l~~~~~~~~~p~wS------------pDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~-~~~~SpDG~~la 258 (430)
T PRK00178 192 VTLLQSREPILSPRWS------------PDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNG-APAWSPDGSKLA 258 (430)
T ss_pred eEEecCCCceeeeeEC------------CCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcC-CeEECCCCCEEE
Confidence 4455677788888887 899999877644 368889987433333222333222 246899999887
Q ss_pred E-EeCCC--cEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeC-CC--eEEEEeCCCCeEEEEecCCCCCEEEE
Q 001042 898 S-GSDDQ--SVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASH-DG--TVKMWDVRTDTCVATVGRCSSAVLCM 970 (1178)
Q Consensus 898 s-gs~dg--~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~-dg--~V~iwd~~~~~~~~~~~~~~~~I~~l 970 (1178)
. .+.+| .|.+||+.+++.. .+..+........|+ +++.++..+. +| .|.++|+.+++..... .........
T Consensus 259 ~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~~~~~~~ 336 (430)
T PRK00178 259 FVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FVGNYNARP 336 (430)
T ss_pred EEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCCccce
Confidence 4 44444 6888899987654 455555566677888 6777665553 33 5778888877654332 222333467
Q ss_pred EEeCCCCEEEEEeCC-C--eEEEEECCCCceEEEEecCCccEEEEEE--cCCEEEEEeCC-C--cEEEEEcCCCeeeeEe
Q 001042 971 EYDDSTGILAAGGRD-A--VANIWDIRAGRQMHKFLGHTKWIRSIRM--DRDTVITGSDD-W--TARMWSISRGTCDAVL 1042 (1178)
Q Consensus 971 ~~sp~~~~l~sgs~d-g--~I~lwD~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sgs~d-g--~I~iwd~~~~~~~~~~ 1042 (1178)
.|+|+|+.++..+.+ + .|.+||+.+++....... .......| +++.++..+.+ | .+.+++.. +.....+
T Consensus 337 ~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l 413 (430)
T PRK00178 337 RLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPL 413 (430)
T ss_pred EECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEC
Confidence 899999999877643 2 588999988764322221 11123344 55666555433 3 46667764 3344455
Q ss_pred ccCCCcEEEEEEec
Q 001042 1043 ACHAGPVQCVEYSS 1056 (1178)
Q Consensus 1043 ~~h~~~I~~l~~sp 1056 (1178)
..+.+.+...+|+|
T Consensus 414 ~~~~g~~~~p~ws~ 427 (430)
T PRK00178 414 PTAQGEVREPSWSP 427 (430)
T ss_pred cCCCCCcCCCccCC
Confidence 54556667777776
No 284
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.93 E-value=5.2e-09 Score=116.46 Aligned_cols=283 Identities=16% Similarity=0.215 Sum_probs=186.9
Q ss_pred eeEeecccccceEEEe--cCCCEEEEEeCCCcEEEEECCC-------CcEEEEecCCCCceEEEEEe-CCCeEEEEeCCC
Q 001042 875 LRATLKGHTRTVRAIN--SDRGKVVSGSDDQSVLVWDKQT-------SQLLEELKGHDAQVSCVRML-SGERVLTASHDG 944 (1178)
Q Consensus 875 ~~~~l~~h~~~V~~~s--~d~~~l~sgs~dg~I~iwd~~t-------~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg 944 (1178)
....+.||...|.++. .+.+.+++++.|++|++|.++. ..+..++..|..+|.++.|. +...++ +.||
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~--ScD~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIA--SCDG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceee--eccC
Confidence 3467889999988762 4556799999999999999854 23667888999999999998 444444 4588
Q ss_pred eEEEEeCCCCeEEEEecC--CCCCEEEEEEeC--CCCEEEEE-eCCCeEEEEECCCCceEEEEec-----CCccEEEEEE
Q 001042 945 TVKMWDVRTDTCVATVGR--CSSAVLCMEYDD--STGILAAG-GRDAVANIWDIRAGRQMHKFLG-----HTKWIRSIRM 1014 (1178)
Q Consensus 945 ~V~iwd~~~~~~~~~~~~--~~~~I~~l~~sp--~~~~l~sg-s~dg~I~lwD~~~~~~~~~~~~-----~~~~v~~l~~ 1014 (1178)
.|.+||.--|+.+..... ..+.+..+..-+ +...+++| +...+++++|.+.++.+..++- .+..+.+++.
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 999999877766543311 122233333323 34444444 6788999999999887766643 3455677776
Q ss_pred --cCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEE-EECCCCceEEEEEecccCC
Q 001042 1015 --DRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRF-WENDDGGIKCVKNVTIHSS 1091 (1178)
Q Consensus 1015 --~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~i-wd~~~~~~~~~~~~~~h~~ 1091 (1178)
.|+.++++-.+|.|.+.|.++|+.+..+....-....++ .|..+.++....|.++.+ |...+| ...........
T Consensus 885 a~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldg--imh~q~kpppe 961 (1034)
T KOG4190|consen 885 ADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDG--IMHLQDKPPPE 961 (1034)
T ss_pred ccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCC--eeeeccCCCCc
Confidence 688999999999999999999998888775444444444 355667777778888888 987776 22222222222
Q ss_pred cEEEEecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEE
Q 001042 1092 AILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRL 1171 (1178)
Q Consensus 1092 ~i~~is~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~I 1171 (1178)
+.--+..-|.-++++...+.+.+|.-... ...+ +.+ . ......-.+..++++.-|-+.-+..|++.|.|.+
T Consensus 962 pahflqsvgpSLV~a~~Gn~lgVYad~a~-~ha~----sti---t-KiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 962 PAHFLQSVGPSLVTAQNGNILGVYADSAE-LHAE----STI---T-KIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred chhhhhccCceeEEeccCcEEEEEecchh-hhhh----hhh---c-cccccccCCccceeeeccccchhhccCCCCceee
Confidence 22222234556777777777778753211 0000 000 0 0011233456788888887777777888898875
No 285
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.92 E-value=1.5e-07 Score=112.77 Aligned_cols=220 Identities=15% Similarity=0.074 Sum_probs=134.8
Q ss_pred EEecccccceEEEEeeeccceeccccccCCCCEEEEEeCC-C--cEEEEcCCCCCceeeEeecccccceEEEecCCCEEE
Q 001042 821 RIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTD-C--LVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVV 897 (1178)
Q Consensus 821 ~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~D-g--~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~ 897 (1178)
+.+..+...+.+..|+ |||+.|+..+.+ + .|.+||+.......+....++.. -..|+|||+.|+
T Consensus 211 ~~l~~~~~~~~~p~wS------------PDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~-~~~wSPDG~~La 277 (448)
T PRK04792 211 QMLLRSPEPLMSPAWS------------PDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGING-APRFSPDGKKLA 277 (448)
T ss_pred eEeecCCCcccCceEC------------CCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcC-CeeECCCCCEEE
Confidence 3455566778888887 899999876543 3 58888876333333333333322 236899999887
Q ss_pred E-EeCCCc--EEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeC-CC--eEEEEeCCCCeEEEEecCCCCCEEEE
Q 001042 898 S-GSDDQS--VLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASH-DG--TVKMWDVRTDTCVATVGRCSSAVLCM 970 (1178)
Q Consensus 898 s-gs~dg~--I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~-dg--~V~iwd~~~~~~~~~~~~~~~~I~~l 970 (1178)
. .+.+|. |.+||+.+++. ..+..+........|+ +++.++..+. +| .|.++|+.+++..... .........
T Consensus 278 ~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~~ 355 (448)
T PRK04792 278 LVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLGG 355 (448)
T ss_pred EEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcCe
Confidence 5 455664 77889887765 4455555566778898 6676665543 33 5677788777654322 222233457
Q ss_pred EEeCCCCEEEEEeCC-C--eEEEEECCCCceEEEEecCCccEEEEEEcCCEEEEEe-CCCc--EEEEEcCCCeeeeEecc
Q 001042 971 EYDDSTGILAAGGRD-A--VANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGS-DDWT--ARMWSISRGTCDAVLAC 1044 (1178)
Q Consensus 971 ~~sp~~~~l~sgs~d-g--~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~~l~sgs-~dg~--I~iwd~~~~~~~~~~~~ 1044 (1178)
+|+|||+.++..+.+ + .|.++|+.+++...........-.+.+.+++.++..+ .+|. +++++. +|.....+..
T Consensus 356 ~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~ 434 (448)
T PRK04792 356 SITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPA 434 (448)
T ss_pred eECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcC
Confidence 899999998876543 3 5667888877643222111111112333555655544 3443 667776 5666666666
Q ss_pred CCCcEEEEEEec
Q 001042 1045 HAGPVQCVEYSS 1056 (1178)
Q Consensus 1045 h~~~I~~l~~sp 1056 (1178)
+.+.+...+|+|
T Consensus 435 ~~g~~~~p~Wsp 446 (448)
T PRK04792 435 GQGEVKSPAWSP 446 (448)
T ss_pred CCCCcCCCccCC
Confidence 666777788876
No 286
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.91 E-value=7.3e-07 Score=105.64 Aligned_cols=257 Identities=14% Similarity=0.085 Sum_probs=162.8
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEE-EecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCce---
Q 001042 851 AGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA-INSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQV--- 926 (1178)
Q Consensus 851 ~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~-~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V--- 926 (1178)
+..++.++.+|.+..+|.+.. +......... .+.+ -.-.+..++.++.+|.+..+|.++|+.+..........
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG--~~~W~~~~~~-~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~ 196 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDG--EVAWQTKVAG-EALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLR 196 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCC--CCcccccCCC-ceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCccccc
Confidence 566777888999999997633 2222222211 1111 11135577778889999999999999988776432111
Q ss_pred --EEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCC-------CEEEEEEeC--CCCEEEEEeCCCeEEEEECCC
Q 001042 927 --SCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSS-------AVLCMEYDD--STGILAAGGRDAVANIWDIRA 995 (1178)
Q Consensus 927 --~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~-------~I~~l~~sp--~~~~l~sgs~dg~I~lwD~~~ 995 (1178)
..-.. .++.++.++.+|.+..+|..+|+.+........ ....+..+| .+..+++++.+|.+..+|..+
T Consensus 197 ~~~sP~v-~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~t 275 (394)
T PRK11138 197 GESAPAT-AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRS 275 (394)
T ss_pred CCCCCEE-ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCC
Confidence 01111 245677888899999999999987665431110 011111222 355677788899999999999
Q ss_pred CceEEEEecCCccEEEEEEcCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCC-cEEEEEEecCCCEEEEEeCCCcEEEEE
Q 001042 996 GRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAG-PVQCVEYSSSDRGIITGSSDGLLRFWE 1074 (1178)
Q Consensus 996 ~~~~~~~~~~~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~-~I~~l~~spdg~~L~sgs~Dg~I~iwd 1074 (1178)
|+.+.+... .....+...++.++.++.+|.+..+|..+|+.+.....-.. ...+... .+..++.++.||.+...|
T Consensus 276 G~~~W~~~~--~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld 351 (394)
T PRK11138 276 GQIVWKREY--GSVNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWIN 351 (394)
T ss_pred CCEEEeecC--CCccCcEEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEE
Confidence 988765432 22234556788889999999999999999987654432111 1222222 256788889999999999
Q ss_pred CCCCceEEEEEecccCCcEEE-EecCCCEEEEEeCCCcEEEEEc
Q 001042 1075 NDDGGIKCVKNVTIHSSAILS-INAGDHWLGIGAADNSMSLFHR 1117 (1178)
Q Consensus 1075 ~~~~~~~~~~~~~~h~~~i~~-is~dg~~Lasgs~Dg~I~iwd~ 1117 (1178)
..+|+......+ ....+.+ ....+..|++++.||.+..++.
T Consensus 352 ~~tG~~~~~~~~--~~~~~~s~P~~~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 352 REDGRFVAQQKV--DSSGFLSEPVVADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCCCCEEEEEEc--CCCcceeCCEEECCEEEEEeCCceEEEEeC
Confidence 999954333332 2222221 1124557888899999988764
No 287
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.91 E-value=2e-07 Score=111.60 Aligned_cols=216 Identities=16% Similarity=0.118 Sum_probs=133.2
Q ss_pred EEecccccceEEEEeeeccceeccccccCCCCEEEEEeCC---CcEEEEcCCCCCceeeEeecccccceEEEecCCCEEE
Q 001042 821 RIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTD---CLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVV 897 (1178)
Q Consensus 821 ~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~D---g~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~ 897 (1178)
+.+..+...+.+.+|+ |||++|+.++.+ ..|++||+............+... ..+|+|||+.++
T Consensus 183 ~~l~~~~~~~~~p~~S------------pdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~-~~~~spDg~~l~ 249 (417)
T TIGR02800 183 QTITRSREPILSPAWS------------PDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNG-APAFSPDGSKLA 249 (417)
T ss_pred EEeecCCCceecccCC------------CCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCcc-ceEECCCCCEEE
Confidence 4455666678888777 999999987654 479999987332322222222221 236899999876
Q ss_pred E-EeCCC--cEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeC-CC--eEEEEeCCCCeEEEEecCCCCCEEEE
Q 001042 898 S-GSDDQ--SVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASH-DG--TVKMWDVRTDTCVATVGRCSSAVLCM 970 (1178)
Q Consensus 898 s-gs~dg--~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~-dg--~V~iwd~~~~~~~~~~~~~~~~I~~l 970 (1178)
. .+.++ .|.+||+.+++. ..+..+........|+ ++..++.++. +| .|.++|+.+++.. .+..+.......
T Consensus 250 ~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~ 327 (417)
T TIGR02800 250 VSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASP 327 (417)
T ss_pred EEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCe
Confidence 4 44443 588999988765 3444455555567788 6777776554 33 6888888877643 333345567788
Q ss_pred EEeCCCCEEEEEeCCC---eEEEEECCCCceEEEEecCCccEEEEEE--cCCEEEEEeCCC---cEEEEEcCCCeeeeEe
Q 001042 971 EYDDSTGILAAGGRDA---VANIWDIRAGRQMHKFLGHTKWIRSIRM--DRDTVITGSDDW---TARMWSISRGTCDAVL 1042 (1178)
Q Consensus 971 ~~sp~~~~l~sgs~dg---~I~lwD~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sgs~dg---~I~iwd~~~~~~~~~~ 1042 (1178)
.|+|+|+.++.++.++ .|.+||+.++... .+... ......+| +++.++..+.++ .+++.+. ++.....+
T Consensus 328 ~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~ 404 (417)
T TIGR02800 328 SWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRARL 404 (417)
T ss_pred EECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeEC
Confidence 9999999999888776 8999999876543 22221 12223344 566666666543 3445453 34444444
Q ss_pred ccCCCcEEEEEE
Q 001042 1043 ACHAGPVQCVEY 1054 (1178)
Q Consensus 1043 ~~h~~~I~~l~~ 1054 (1178)
..+.+.+...+|
T Consensus 405 ~~~~g~~~~~~w 416 (417)
T TIGR02800 405 PLGNGDVREPAW 416 (417)
T ss_pred CCCCCCcCCCCC
Confidence 433444444443
No 288
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.89 E-value=4.6e-06 Score=107.02 Aligned_cols=326 Identities=9% Similarity=0.100 Sum_probs=199.2
Q ss_pred ccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEE----cCCCCCceeeEeecccccceE--EEecCCCEEEE
Q 001042 825 GHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIW----DPSLRGSELRATLKGHTRTVR--AINSDRGKVVS 898 (1178)
Q Consensus 825 gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iW----d~~~~~~~~~~~l~~h~~~V~--~~s~d~~~l~s 898 (1178)
...+.|.++.|. ++...++.+..+|.|.+. +......+.+.. -...|. +||||+..++.
T Consensus 73 ~~~~~ivs~~yl------------~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~---vd~GI~a~~WSPD~Ella~ 137 (928)
T PF04762_consen 73 DPNDKIVSFQYL------------ADSESLCIALASGDIILVREDPDPDEDEIEIVGS---VDSGILAASWSPDEELLAL 137 (928)
T ss_pred CCCCcEEEEEec------------cCCCcEEEEECCceEEEEEccCCCCCceeEEEEE---EcCcEEEEEECCCcCEEEE
Confidence 345789999987 788889999999999999 544333333333 334555 57999999999
Q ss_pred EeCCCcEEEEECCCCcEEEEecCCCCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeE--------------EEEecCCC
Q 001042 899 GSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTC--------------VATVGRCS 964 (1178)
Q Consensus 899 gs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~--------------~~~~~~~~ 964 (1178)
.+.+|++.+-+ .+.+.+....-+.... .....++.|....=.-+.-..|+. ...+. ..
T Consensus 138 vT~~~~l~~mt-~~fd~i~E~~l~~~~~------~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~d 209 (928)
T PF04762_consen 138 VTGEGNLLLMT-RDFDPISEVPLDSDDF------GESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WD 209 (928)
T ss_pred EeCCCEEEEEe-ccceEEEEeecCcccc------CCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cC
Confidence 99999998875 4566665554332211 111223322221111111111111 11122 34
Q ss_pred CCEEEEEEeCCCCEEEEEeC---C---CeEEEEECCCCceEEEEecCCccEEEEEE--cCCEEEEEeC---CCcEEEEEc
Q 001042 965 SAVLCMEYDDSTGILAAGGR---D---AVANIWDIRAGRQMHKFLGHTKWIRSIRM--DRDTVITGSD---DWTARMWSI 1033 (1178)
Q Consensus 965 ~~I~~l~~sp~~~~l~sgs~---d---g~I~lwD~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sgs~---dg~I~iwd~ 1033 (1178)
+.-..++|-.||.++|+.+. . ..+++|+-. |....+-..-.+--.+++| +|+.+|+... ...|.+|.
T Consensus 210 d~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE- 287 (928)
T PF04762_consen 210 DGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE- 287 (928)
T ss_pred CCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-
Confidence 56678999999999998874 2 579999954 6654444444444557788 5667777664 35577777
Q ss_pred CCCeeeeEec----cCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCC---cEEEEec-CCCEEEE
Q 001042 1034 SRGTCDAVLA----CHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSS---AILSINA-GDHWLGI 1105 (1178)
Q Consensus 1034 ~~~~~~~~~~----~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~---~i~~is~-dg~~Las 1105 (1178)
++|-....+. .....|..+.|++|+..||..-.|. |.+|-..+-.+-..+.+..... ....++| +...|..
T Consensus 288 rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v 366 (928)
T PF04762_consen 288 RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHV 366 (928)
T ss_pred cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEE
Confidence 5554444433 3456799999999999999977555 9999998886655555543322 2255555 4556777
Q ss_pred EeCCCcEEEEEcC----CCcc-------ccccCCCCCcc--ceeEeecc-------CCCcccEEEEEEcCCCCEEEEEeC
Q 001042 1106 GAADNSMSLFHRP----QERL-------GGFSGTGSKMS--GWQLYRTP-------QKTVAVVRCIASDLERKRICSGGR 1165 (1178)
Q Consensus 1106 gs~Dg~I~iwd~~----~~~~-------~~~~~~g~~~~--~~~~~~~~-------~~h~~~V~~lafspdg~~Las~s~ 1165 (1178)
++.+|.+..++.. .+.. ....-+|..+. .+...-.+ -.-...|.+++|++++..+|+-..
T Consensus 367 ~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~ 446 (928)
T PF04762_consen 367 LTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTS 446 (928)
T ss_pred EecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEEC
Confidence 7776777555432 1110 00111221110 00000000 012367999999999998999999
Q ss_pred CCcEEEEECCC
Q 001042 1166 NGLLRLWEATI 1176 (1178)
Q Consensus 1166 Dg~V~IWdv~t 1176 (1178)
||.|.+|....
T Consensus 447 d~~l~~~~~~~ 457 (928)
T PF04762_consen 447 DGSLSIYEWDL 457 (928)
T ss_pred CCCEEEEEecC
Confidence 99999998543
No 289
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.88 E-value=1.1e-06 Score=96.34 Aligned_cols=213 Identities=16% Similarity=0.117 Sum_probs=146.5
Q ss_pred CCCcEEEEECCCCcEEEEecCC--CCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCE
Q 001042 901 DDQSVLVWDKQTSQLLEELKGH--DAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGI 978 (1178)
Q Consensus 901 ~dg~I~iwd~~t~~~~~~l~~h--~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~ 978 (1178)
.+|+|..||..+|+.+....-. .....+....+++.+++++.++.+..||..+|+.+....... .+.... ...+..
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~-~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPG-PISGAP-VVDGGR 78 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSS-CGGSGE-EEETTE
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccc-ccccee-eecccc
Confidence 3689999999999999887541 122222234467888888999999999999999888775422 211111 224556
Q ss_pred EEEEeCCCeEEEEECCCCceEEEE-ecCC-----ccEEEEEEcCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCc----
Q 001042 979 LAAGGRDAVANIWDIRAGRQMHKF-LGHT-----KWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAGP---- 1048 (1178)
Q Consensus 979 l~sgs~dg~I~lwD~~~~~~~~~~-~~~~-----~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~---- 1048 (1178)
+++++.++.+..+|..+|+.+.+. .... .......+.++.++.+..++.|..+|.++|+.+.........
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~ 158 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSP 158 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcc
Confidence 777778889999999999998884 3321 123345557889999999999999999999998887654322
Q ss_pred ------EEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEE-EecCCCEEEEEeCCCcEEEEEcCCC
Q 001042 1049 ------VQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILS-INAGDHWLGIGAADNSMSLFHRPQE 1120 (1178)
Q Consensus 1049 ------I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~-is~dg~~Lasgs~Dg~I~iwd~~~~ 1120 (1178)
+.+-....++ .+..++.+|.+..+|+.+++. ..... ...... ...++..+++++.++.+..||+.++
T Consensus 159 ~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~--~w~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 159 ISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEK--LWSKP--ISGIYSLPSVDGGTLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEE--EEEEC--SS-ECECEECCCTEEEEEETTTEEEEEETTTT
T ss_pred eeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCE--EEEec--CCCccCCceeeCCEEEEEeCCCEEEEEECCCC
Confidence 1222222344 777777788644449999952 22222 222433 5678888888889999999999854
No 290
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.86 E-value=6.4e-07 Score=107.38 Aligned_cols=209 Identities=10% Similarity=0.061 Sum_probs=129.6
Q ss_pred cEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeC-C--CeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEE
Q 001042 904 SVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASH-D--GTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGIL 979 (1178)
Q Consensus 904 ~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~-d--g~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l 979 (1178)
.+.++|....+. +.+..+...+.+..|+ +++.++..+. + ..|.+||+.+++.... ..........+|+|||+.|
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCCEE
Confidence 677778765443 4555567788899999 6777776543 3 3688999988765332 2223334578999999988
Q ss_pred EE-EeCCC--eEEEEECCCCceEEEEecCCccEEEEEEc--CCEEEEEe-CCC--cEEEEEcCCCeeeeEeccCCCcEEE
Q 001042 980 AA-GGRDA--VANIWDIRAGRQMHKFLGHTKWIRSIRMD--RDTVITGS-DDW--TARMWSISRGTCDAVLACHAGPVQC 1051 (1178)
Q Consensus 980 ~s-gs~dg--~I~lwD~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sgs-~dg--~I~iwd~~~~~~~~~~~~h~~~I~~ 1051 (1178)
+. .+.+| .|+++|+.+++.. .+..+.......+|+ ++.++..+ .+| .|+++|+.+++... +.........
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~ 354 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLG 354 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcC
Confidence 75 45556 4888898877643 343444445566774 45665544 344 46667777776433 2212223345
Q ss_pred EEEecCCCEEEEEeC-CC--cEEEEECCCCceEEEEEecccCCcEEEEecCCCEEEEEeCC-Cc--EEEEEcC
Q 001042 1052 VEYSSSDRGIITGSS-DG--LLRFWENDDGGIKCVKNVTIHSSAILSINAGDHWLGIGAAD-NS--MSLFHRP 1118 (1178)
Q Consensus 1052 l~~spdg~~L~sgs~-Dg--~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~Lasgs~D-g~--I~iwd~~ 1118 (1178)
.+|+|||++++..+. ++ .|.++|+.++....+.. .....--+++|||+.|+..+.+ +. +.+++.+
T Consensus 355 ~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~--~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 355 GSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTS--TRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred eeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccC--CCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 789999999877654 34 45567887775433221 1112223679999988776554 33 5566653
No 291
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.84 E-value=2.7e-08 Score=114.80 Aligned_cols=279 Identities=17% Similarity=0.224 Sum_probs=190.7
Q ss_pred ccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCcee--eEeecccccceEEEe--cCCCEEEEEeCC
Q 001042 827 AGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSEL--RATLKGHTRTVRAIN--SDRGKVVSGSDD 902 (1178)
Q Consensus 827 ~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~--~~~l~~h~~~V~~~s--~d~~~l~sgs~d 902 (1178)
.+++.++..+ |.|+-+|.++.-| +.+-|++...... +..+.....+-+.++ +...+-++....
T Consensus 24 ~~~~~a~si~------------p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~ 90 (1081)
T KOG0309|consen 24 DGGFNAVSIN------------PSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSN 90 (1081)
T ss_pred cCcccceeec------------cccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCc
Confidence 4556666665 7899999999887 5566765333322 222232223333454 444455555555
Q ss_pred CcEEEEECCC---CcEEEEecCCCCceEEEEEe--CCCeEEEEeCCCeEEEEeCCCCe-EEEEecCCCCCEEEEEEeCCC
Q 001042 903 QSVLVWDKQT---SQLLEELKGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTDT-CVATVGRCSSAVLCMEYDDST 976 (1178)
Q Consensus 903 g~I~iwd~~t---~~~~~~l~~h~~~V~~l~~~--~~~~l~sgs~dg~V~iwd~~~~~-~~~~~~~~~~~I~~l~~sp~~ 976 (1178)
..-.+|++.. ...-..+.+|+..|+.+.|+ ..+.+++++.|..+..||+++.. .+............++|+-..
T Consensus 91 qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~ 170 (1081)
T KOG0309|consen 91 QKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKD 170 (1081)
T ss_pred chhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccC
Confidence 6677999753 23344677999999999998 56789999999999999998754 455555556677889998866
Q ss_pred CEEEEEeCCCeEEEEECCCC-ceEEEEecCCccEEEEEEcC---CEEEEEeCCCcEEEEEcCCCeeee-EeccCCCcEEE
Q 001042 977 GILAAGGRDAVANIWDIRAG-RQMHKFLGHTKWIRSIRMDR---DTVITGSDDWTARMWSISRGTCDA-VLACHAGPVQC 1051 (1178)
Q Consensus 977 ~~l~sgs~dg~I~lwD~~~~-~~~~~~~~~~~~v~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~-~~~~h~~~I~~ 1051 (1178)
..+.+.+....|.+||.+.| .++..+++|...|..+.++. ..+.+.+.||+|+.||..+..... .......+|+.
T Consensus 171 p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~ 250 (1081)
T KOG0309|consen 171 PNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWR 250 (1081)
T ss_pred cchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCccee
Confidence 66666677788999999876 56788889999999998853 479999999999999987643221 12223456666
Q ss_pred EEEecCCCEEEEEe-----------CCCcEEEEECCCCceEEEEEecccCCcEEEEe------cC------CCEEEEEeC
Q 001042 1052 VEYSSSDRGIITGS-----------SDGLLRFWENDDGGIKCVKNVTIHSSAILSIN------AG------DHWLGIGAA 1108 (1178)
Q Consensus 1052 l~~spdg~~L~sgs-----------~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is------~d------g~~Lasgs~ 1108 (1178)
-.+.|-|.-.++-- -+..-..|+..++ ...+..+.||...|..+- .+ .-.|++-|.
T Consensus 251 ~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~-~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSk 329 (1081)
T KOG0309|consen 251 GRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDL-NTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSK 329 (1081)
T ss_pred ccccccCceeEeccccCCeeeeeccccchhhhhccccC-CcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeec
Confidence 66666544322211 1222233444443 367899999999987661 12 236999999
Q ss_pred CCcEEEEEcCC
Q 001042 1109 DNSMSLFHRPQ 1119 (1178)
Q Consensus 1109 Dg~I~iwd~~~ 1119 (1178)
|.++++|-+.+
T Consensus 330 D~~lrlWpI~~ 340 (1081)
T KOG0309|consen 330 DQTLRLWPIDS 340 (1081)
T ss_pred CCceEeeeccH
Confidence 99999998754
No 292
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.84 E-value=1.1e-05 Score=91.46 Aligned_cols=230 Identities=14% Similarity=0.130 Sum_probs=143.7
Q ss_pred CCCCEEEEEeC----------CCcEEEEcCCCCCceeeEeecc---------cccceEEEecCCCEEEEEe-C-CCcEEE
Q 001042 849 EDAGFFISGST----------DCLVKIWDPSLRGSELRATLKG---------HTRTVRAINSDRGKVVSGS-D-DQSVLV 907 (1178)
Q Consensus 849 ~d~~~Lasgs~----------Dg~I~iWd~~~~~~~~~~~l~~---------h~~~V~~~s~d~~~l~sgs-~-dg~I~i 907 (1178)
||++.++.+.. +..|.+||.. ..+....+.- -.....++++||+++++.. . +..|.+
T Consensus 55 pDg~~lyva~~~~~R~~~G~~~d~V~v~D~~--t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 55 SDGSFFAHASTVYSRIARGKRTDYVEVIDPQ--THLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred CCCCEEEEEeccccccccCCCCCEEEEEECc--cCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 89998877665 7899999976 4444444442 2223557899999999776 3 689999
Q ss_pred EECCCCcEEEEecCCCCceEEEEEeCCCeEEEEeCCCeEEEEeCCC-CeEE-EE---ecCCCCCEE-EEEEeC-CCCEEE
Q 001042 908 WDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRT-DTCV-AT---VGRCSSAVL-CMEYDD-STGILA 980 (1178)
Q Consensus 908 wd~~t~~~~~~l~~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~-~~~~-~~---~~~~~~~I~-~l~~sp-~~~~l~ 980 (1178)
.|+.+++.+.++.... ...-...++.. ..+-+.||......+.+ |+.. .. +......+. .-.+.+ +|++++
T Consensus 133 vD~~~~kvv~ei~vp~-~~~vy~t~e~~-~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~ 210 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPD-CYHIFPTANDT-FFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVW 210 (352)
T ss_pred EECCCCcEEEEEeCCC-CcEEEEecCCc-cEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEE
Confidence 9999999999887532 22222222222 33444555554433322 2211 11 111011100 014455 788777
Q ss_pred EEeCCCeEEEEECCCC-----ceEEEEec-------CCccEEEEEEc--CCEEEEEe----------CCCcEEEEEcCCC
Q 001042 981 AGGRDAVANIWDIRAG-----RQMHKFLG-------HTKWIRSIRMD--RDTVITGS----------DDWTARMWSISRG 1036 (1178)
Q Consensus 981 sgs~dg~I~lwD~~~~-----~~~~~~~~-------~~~~v~~l~~~--~~~l~sgs----------~dg~I~iwd~~~~ 1036 (1178)
+... |.|.+.|+... +....+.. ..+...-++++ ++.+++.. ..+.|.++|..++
T Consensus 211 vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~ 289 (352)
T TIGR02658 211 PTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG 289 (352)
T ss_pred EecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC
Confidence 7666 99999996443 22222211 12223336664 55555532 2257999999999
Q ss_pred eeeeEeccCCCcEEEEEEecCCC-EEEEEe-CCCcEEEEECCCCceEEEEEe
Q 001042 1037 TCDAVLACHAGPVQCVEYSSSDR-GIITGS-SDGLLRFWENDDGGIKCVKNV 1086 (1178)
Q Consensus 1037 ~~~~~~~~h~~~I~~l~~spdg~-~L~sgs-~Dg~I~iwd~~~~~~~~~~~~ 1086 (1178)
+.+..+.. ...+..++++||++ .|++.. .++.|.+.|..++ +.+.++
T Consensus 290 kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~--k~i~~i 338 (352)
T TIGR02658 290 KRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETG--KELSSV 338 (352)
T ss_pred eEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC--eEEeee
Confidence 99988873 45789999999999 777665 6788999999998 555555
No 293
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.84 E-value=4.8e-06 Score=106.89 Aligned_cols=217 Identities=16% Similarity=0.165 Sum_probs=130.8
Q ss_pred ccCCCCEEEEEeC---C---CcEEEEcCCCCCceeeEeecc--cccceEEEecCCCEEEEEeC---CCcEEEEECCCCcE
Q 001042 847 DREDAGFFISGST---D---CLVKIWDPSLRGSELRATLKG--HTRTVRAINSDRGKVVSGSD---DQSVLVWDKQTSQL 915 (1178)
Q Consensus 847 ~s~d~~~Lasgs~---D---g~I~iWd~~~~~~~~~~~l~~--h~~~V~~~s~d~~~l~sgs~---dg~I~iwd~~t~~~ 915 (1178)
|..||.++|+.+- + ..+|||+-+ +.+..+.+. .-....+|.|.|+.+|+... ...|.+|. ++|-.
T Consensus 217 WRGDG~yFAVss~~~~~~~~R~iRVy~Re---G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLr 292 (928)
T PF04762_consen 217 WRGDGEYFAVSSVEPETGSRRVIRVYSRE---GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLR 292 (928)
T ss_pred ECCCCcEEEEEEEEcCCCceeEEEEECCC---ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcE
Confidence 3499999998875 2 579999943 344333321 12233478899999998864 34566666 33433
Q ss_pred EEEe----cCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeE--EEEecC-CCCCEEEEEEeCC-CCEEEEEeCCC
Q 001042 916 LEEL----KGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTC--VATVGR-CSSAVLCMEYDDS-TGILAAGGRDA 986 (1178)
Q Consensus 916 ~~~l----~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~--~~~~~~-~~~~I~~l~~sp~-~~~l~sgs~dg 986 (1178)
-..+ ......|..+.|+ +++.|+....|. |.+|-..+... .+.+.. ....+..+.|+|. ...|..++.+|
T Consensus 293 hgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g 371 (928)
T PF04762_consen 293 HGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNG 371 (928)
T ss_pred eeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCC
Confidence 3333 2456789999999 677777766555 99999877642 223322 2334555999994 45577777777
Q ss_pred eEEEEECCCCceEEEEecCCccEEEEEEcCCEEEEEeCCCcEEEEEcCCCee-----eeEeccCCCcEEEEEEecCCCEE
Q 001042 987 VANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTC-----DAVLACHAGPVQCVEYSSSDRGI 1061 (1178)
Q Consensus 987 ~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~-----~~~~~~h~~~I~~l~~spdg~~L 1061 (1178)
.+..++..-......-....+.-.....||+ .+.+-.++.... ...+. -..+|.+++|++++..+
T Consensus 372 ~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~---------~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~~~~~~ 441 (928)
T PF04762_consen 372 QYEIYDFAWDVSRSPGSSPNDNGTVAVIDGN---------KLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSPSNSRF 441 (928)
T ss_pred cEEEEEEEEEEEecCCCCccCceEEEEEeCC---------eEEEecccccCCCchHhceEEc-CCCCcEEEEEeCCCCeE
Confidence 7777664211000000000011111111222 455545444321 22333 35789999999999889
Q ss_pred EEEeCCCcEEEEECCCC
Q 001042 1062 ITGSSDGLLRFWENDDG 1078 (1178)
Q Consensus 1062 ~sgs~Dg~I~iwd~~~~ 1078 (1178)
++-..||.|.+|.....
T Consensus 442 avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 442 AVLTSDGSLSIYEWDLK 458 (928)
T ss_pred EEEECCCCEEEEEecCC
Confidence 99999999999986543
No 294
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.83 E-value=1.3e-06 Score=95.66 Aligned_cols=215 Identities=20% Similarity=0.176 Sum_probs=144.1
Q ss_pred CCcEEEEcCCCCCceee-Eeecc-cccceEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEeCCCeE
Q 001042 860 DCLVKIWDPSLRGSELR-ATLKG-HTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERV 937 (1178)
Q Consensus 860 Dg~I~iWd~~~~~~~~~-~~l~~-h~~~V~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~~~~~l 937 (1178)
+|+|..||.. .+...- ..+.. ....+.....++..+++++.++.+..||..+|+.+..... ...+.......++.+
T Consensus 2 ~g~l~~~d~~-tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~~v 79 (238)
T PF13360_consen 2 DGTLSALDPR-TGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVVDGGRV 79 (238)
T ss_dssp TSEEEEEETT-TTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEEETTEE
T ss_pred CCEEEEEECC-CCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeeeccccc
Confidence 6788888875 222222 22211 2223322344777888889999999999999999888775 222222123457777
Q ss_pred EEEeCCCeEEEEeCCCCeEEEEe-cCCC---CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCcc-----
Q 001042 938 LTASHDGTVKMWDVRTDTCVATV-GRCS---SAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKW----- 1008 (1178)
Q Consensus 938 ~sgs~dg~V~iwd~~~~~~~~~~-~~~~---~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~----- 1008 (1178)
++++.++.+..+|..+|+.+... .... ..........++..++++..++.|..+|.++|+.+.........
T Consensus 80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~ 159 (238)
T PF13360_consen 80 YVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPI 159 (238)
T ss_dssp EEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--E
T ss_pred ccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcce
Confidence 88888999999999999998874 3221 11222333334788888888999999999999998887664322
Q ss_pred ------EEEEEEcCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 001042 1009 ------IRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGG 1079 (1178)
Q Consensus 1009 ------v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~ 1079 (1178)
...+.+.++.+..++.+|.+..+|+.+++.+.... ...+..+ ...++..++.++.++.|..||+.+|+
T Consensus 160 ~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 160 SSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp EEETTEEEEEECCTTEEEEECCTSSEEEEETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTE
T ss_pred eeecccccceEEECCEEEEEcCCCeEEEEECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 13344455588888888864444999998664333 2223331 35677888888899999999999994
No 295
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.83 E-value=2.1e-06 Score=112.18 Aligned_cols=246 Identities=11% Similarity=0.153 Sum_probs=156.2
Q ss_pred EEEEEe--CCCeEEEEeCCCeEEEEeCCCCeEEEEecC-C-------------CCCEEEEEEeCCCCEEEEEe-CCCeEE
Q 001042 927 SCVRML--SGERVLTASHDGTVKMWDVRTDTCVATVGR-C-------------SSAVLCMEYDDSTGILAAGG-RDAVAN 989 (1178)
Q Consensus 927 ~~l~~~--~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~-~-------------~~~I~~l~~sp~~~~l~sgs-~dg~I~ 989 (1178)
..+++. ++..+++-+.++.|++||.. +..+..+.. . -.....++++++++.|+++. .++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 345555 34566666777888899875 443433322 0 12357899999888766655 457899
Q ss_pred EEECCCCceEEEEecC-----------------CccEEEEEEcC---CEEEEEeCCCcEEEEEcCCCeeeeEeccC----
Q 001042 990 IWDIRAGRQMHKFLGH-----------------TKWIRSIRMDR---DTVITGSDDWTARMWSISRGTCDAVLACH---- 1045 (1178)
Q Consensus 990 lwD~~~~~~~~~~~~~-----------------~~~v~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~h---- 1045 (1178)
.+|..++. +.++.+. -.....+++++ ..+++.+.++.|++||..++... .+.+.
T Consensus 650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYER 727 (1057)
T ss_pred EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccc
Confidence 99987764 3333210 11235677764 35666778899999998776542 22111
Q ss_pred -----------CCcEEEEEEecCCCEE-EEEeCCCcEEEEECCCCceEEEEE-----------eccc----------CCc
Q 001042 1046 -----------AGPVQCVEYSSSDRGI-ITGSSDGLLRFWENDDGGIKCVKN-----------VTIH----------SSA 1092 (1178)
Q Consensus 1046 -----------~~~I~~l~~spdg~~L-~sgs~Dg~I~iwd~~~~~~~~~~~-----------~~~h----------~~~ 1092 (1178)
-...+.++++|+|+.| ++.+.++.|++||+.++....+.. +..+ ...
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 1235679999999854 555567899999998764322110 0000 011
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 001042 1093 ILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLW 1172 (1178)
Q Consensus 1093 i~~is~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IW 1172 (1178)
-.+++++|+.+++-+.++.|++||..++......++|... +.--....++-.....++++++|+++++-+.+++|++|
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G--~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvi 885 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAG--FKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYL 885 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcC--CCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEE
Confidence 2455788999888899999999999876554444333210 00000112233457789999999998888899999999
Q ss_pred ECCCC
Q 001042 1173 EATIN 1177 (1178)
Q Consensus 1173 dv~tg 1177 (1178)
|+.++
T Consensus 886 d~~~~ 890 (1057)
T PLN02919 886 DLNKG 890 (1057)
T ss_pred ECCCC
Confidence 99886
No 296
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.83 E-value=4.5e-07 Score=107.85 Aligned_cols=214 Identities=10% Similarity=0.006 Sum_probs=128.2
Q ss_pred CcceEEEEecCCCCccc---ccccc----eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccc
Q 001042 768 GRSWVQSMFSREASSRS---HSFSR----VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKRE 840 (1178)
Q Consensus 768 ~~~i~~~aFSpdg~~la---s~~~d----I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~ 840 (1178)
......-+|||||+.++ ++..+ |.+.++++++.. .+..+.+ .....+||
T Consensus 184 ~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-----------------~lt~~~g---~~~~p~wS---- 239 (428)
T PRK01029 184 HSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-----------------KILALQG---NQLMPTFS---- 239 (428)
T ss_pred CCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-----------------EeecCCC---CccceEEC----
Confidence 34556669999998632 22222 888888876520 2222333 34456676
Q ss_pred eeccccccCCCCEEEEEeC-CC----cEEEEcCCCC-CceeeEeeccccc--ceEEEecCCCEEEEEe-CCCcEEEE--E
Q 001042 841 VWDLVGDREDAGFFISGST-DC----LVKIWDPSLR-GSELRATLKGHTR--TVRAINSDRGKVVSGS-DDQSVLVW--D 909 (1178)
Q Consensus 841 ~~~~~~~s~d~~~Lasgs~-Dg----~I~iWd~~~~-~~~~~~~l~~h~~--~V~~~s~d~~~l~sgs-~dg~I~iw--d 909 (1178)
|||+.||..+. +| .+.+|++... .........++.. .-.+|+|||+.|+..+ .+|...+| +
T Consensus 240 --------PDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~ 311 (428)
T PRK01029 240 --------PRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQ 311 (428)
T ss_pred --------CCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEE
Confidence 99998887653 23 3444776522 1222233322222 1237899999888765 45655555 4
Q ss_pred CCC-CcEEEEecCCCCceEEEEEe-CCCeEEEEeCC---CeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeC
Q 001042 910 KQT-SQLLEELKGHDAQVSCVRML-SGERVLTASHD---GTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGR 984 (1178)
Q Consensus 910 ~~t-~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~d---g~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~ 984 (1178)
+.. +.....+..+...+....|+ +++.++..+.+ ..|.+||+.+++..... .....+....|+|||+.|+....
T Consensus 312 ~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt-~~~~~~~~p~wSpDG~~L~f~~~ 390 (428)
T PRK01029 312 IDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT-TSPENKESPSWAIDSLHLVYSAG 390 (428)
T ss_pred CcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc-CCCCCccceEECCCCCEEEEEEC
Confidence 432 33344555555667788899 67777765543 46999999988765433 33345678999999998876543
Q ss_pred ---CCeEEEEECCCCceEEEEecCCccEEEEEEc
Q 001042 985 ---DAVANIWDIRAGRQMHKFLGHTKWIRSIRMD 1015 (1178)
Q Consensus 985 ---dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~ 1015 (1178)
.+.|.++|+.+++..... ...+.+...+|+
T Consensus 391 ~~g~~~L~~vdl~~g~~~~Lt-~~~g~~~~p~Ws 423 (428)
T PRK01029 391 NSNESELYLISLITKKTRKIV-IGSGEKRFPSWG 423 (428)
T ss_pred CCCCceEEEEECCCCCEEEee-cCCCcccCceec
Confidence 356888898877654333 233334445554
No 297
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.81 E-value=1.2e-07 Score=101.03 Aligned_cols=229 Identities=17% Similarity=0.310 Sum_probs=157.5
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCc-----EEEEecCCC------------CceEEEEEe---CCCeEEEEeCCCeEEE
Q 001042 889 INSDRGKVVSGSDDQSVLVWDKQTSQ-----LLEELKGHD------------AQVSCVRML---SGERVLTASHDGTVKM 948 (1178)
Q Consensus 889 ~s~d~~~l~sgs~dg~I~iwd~~t~~-----~~~~l~~h~------------~~V~~l~~~---~~~~l~sgs~dg~V~i 948 (1178)
+...|.+|++|..+|.|.++.-.... ....++.|. ..|..+.|. +...++..+.|.+|++
T Consensus 33 f~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKl 112 (433)
T KOG1354|consen 33 FDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKL 112 (433)
T ss_pred eecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceee
Confidence 57889999999999999998643321 233444453 457788887 3556888899999999
Q ss_pred EeCCCCeE-----------------------------------EEEe-cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 001042 949 WDVRTDTC-----------------------------------VATV-GRCSSAVLCMEYDDSTGILAAGGRDAVANIWD 992 (1178)
Q Consensus 949 wd~~~~~~-----------------------------------~~~~-~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD 992 (1178)
|.+..... .+.+ ..|...|.++.++.|+..++++ .|-.|.+|+
T Consensus 113 WKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-DdLRINLWn 191 (433)
T KOG1354|consen 113 WKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-DDLRINLWN 191 (433)
T ss_pred eeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-cceeeeecc
Confidence 98753211 0111 2456678899999999988876 477899999
Q ss_pred CCCCce---EEEEecC-----CccEEEEEEcCC---EEEEEeCCCcEEEEEcCCCeee----eE------------eccC
Q 001042 993 IRAGRQ---MHKFLGH-----TKWIRSIRMDRD---TVITGSDDWTARMWSISRGTCD----AV------------LACH 1045 (1178)
Q Consensus 993 ~~~~~~---~~~~~~~-----~~~v~~l~~~~~---~l~sgs~dg~I~iwd~~~~~~~----~~------------~~~h 1045 (1178)
+.-... +..++.+ ..-|++..|++. .++-.+..|+|++-|++....- +. +..-
T Consensus 192 lei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffsei 271 (433)
T KOG1354|consen 192 LEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEI 271 (433)
T ss_pred ccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHH
Confidence 864332 2222222 235777778654 8888999999999999853210 01 1111
Q ss_pred CCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCC------------cE-----EEEecCCCEEEEEeC
Q 001042 1046 AGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSS------------AI-----LSINAGDHWLGIGAA 1108 (1178)
Q Consensus 1046 ~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~------------~i-----~~is~dg~~Lasgs~ 1108 (1178)
-..|..+.|+++|+++++-+ --+|++||+.... ..+.+++.|.. .| .+++.++.++++|+.
T Consensus 272 IsSISDvKFs~sGryilsRD-yltvk~wD~nme~-~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy 349 (433)
T KOG1354|consen 272 ISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEA-KPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSY 349 (433)
T ss_pred hhhhhceEEccCCcEEEEec-cceeEEEeccccC-CcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccc
Confidence 23588899999999999874 3679999995432 44555554432 22 344677789999999
Q ss_pred CCcEEEEEcCCC
Q 001042 1109 DNSMSLFHRPQE 1120 (1178)
Q Consensus 1109 Dg~I~iwd~~~~ 1120 (1178)
.+.+++++...+
T Consensus 350 ~n~frvf~~~~g 361 (433)
T KOG1354|consen 350 NNVFRVFNLARG 361 (433)
T ss_pred cceEEEecCCCC
Confidence 999999996544
No 298
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.72 E-value=1.7e-05 Score=82.15 Aligned_cols=307 Identities=17% Similarity=0.136 Sum_probs=161.7
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCC-CceEEE
Q 001042 851 AGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHD-AQVSCV 929 (1178)
Q Consensus 851 ~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~-~~V~~l 929 (1178)
..+++.|+..+.+.--|...++......+.+ .-...++ --|+.++.|+..|.+++.+.++|.....+.... -.+...
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~-RiE~sa~-vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGV-RIECSAI-VVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ 100 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCc-eeeeeeE-EECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence 4566677777777777765333222222221 1111111 157789999999999999999998777765322 223333
Q ss_pred EEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEec--CCc
Q 001042 930 RMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLG--HTK 1007 (1178)
Q Consensus 930 ~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~--~~~ 1007 (1178)
.-.++..+..|+.|++.+..|.++..++...+...+...+-+..+-...|..+...|.+.--..+++.. .++-. ..+
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~-~~~w~~~~~~ 179 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSS-TEFWAATRFG 179 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCCCc-ceehhhhcCC
Confidence 333788999999999999999999999988766655556666677344455555556555444443311 11111 112
Q ss_pred cEEEE-EEcCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEE-----------EEEEecCCCEEEEEeCCCcEEEEEC
Q 001042 1008 WIRSI-RMDRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQ-----------CVEYSSSDRGIITGSSDGLLRFWEN 1075 (1178)
Q Consensus 1008 ~v~~l-~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~-----------~l~~spdg~~L~sgs~Dg~I~iwd~ 1075 (1178)
++.+- .+-+..+..+.-||.+.-+| ..|+.+.... ..++|. .+.+-.++-..+..-..| -.+|..
T Consensus 180 PiF~splcv~~sv~i~~VdG~l~~f~-~sG~qvwr~~-t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~g-hL~w~~ 256 (354)
T KOG4649|consen 180 PIFASPLCVGSSVIITTVDGVLTSFD-ESGRQVWRPA-TKGPIFMEPCESRPSCQQISLENENCFCAPLPIAG-HLLWAT 256 (354)
T ss_pred ccccCceeccceEEEEEeccEEEEEc-CCCcEEEeec-CCCceecccccCCCcceEEEEecCCeEEEeccccc-eEEEEe
Confidence 22211 11223444455566665555 4454444332 222221 222222222222222222 336776
Q ss_pred CCCceEEEE-----EecccCCcEEEEecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEE
Q 001042 1076 DDGGIKCVK-----NVTIHSSAILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRC 1150 (1178)
Q Consensus 1076 ~~~~~~~~~-----~~~~h~~~i~~is~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~ 1150 (1178)
++|....+. .+..|+..+ ...+++..++.||.+.|.-.... +......+.++...... .+.+ .|
T Consensus 257 ~~g~t~~vy~~p~l~F~~h~~~~----S~~~ll~~~s~dgkv~il~~~~s-l~~~~s~~g~lq~~~~~-el~~---eI-- 325 (354)
T KOG4649|consen 257 QSGTTLHVYLSPKLRFDLHSPGI----SYPKLLRRSSGDGKVMILMTSKS-LAEISSNGGELQNLEAI-ELSN---EI-- 325 (354)
T ss_pred cCCcEEEEEeCcccceeccCCCC----cchhhhhhhcCCCcEEEEEeccc-ccccccCCCccceEEEe-ecCc---cc--
Confidence 666211111 111121111 12567888899999988865432 22222233333211100 0110 11
Q ss_pred EEE-cC---CCCEEEEEeCCCcEEEEECCCC
Q 001042 1151 IAS-DL---ERKRICSGGRNGLLRLWEATIN 1177 (1178)
Q Consensus 1151 laf-sp---dg~~Las~s~Dg~V~IWdv~tg 1177 (1178)
| || +| +|..|+.|..|+-||++++
T Consensus 326 --FsSPvii~g-rl~igcRDdYv~cldl~~~ 353 (354)
T KOG4649|consen 326 --FSSPVIIDG-RLLIGCRDDYVRCLDLDTW 353 (354)
T ss_pred --ccCCeEEcc-EEEEEEccCeEEEEecccc
Confidence 2 22 34 5777889999999999875
No 299
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.71 E-value=2.9e-06 Score=100.93 Aligned_cols=221 Identities=9% Similarity=0.063 Sum_probs=129.9
Q ss_pred ecccccceEEEEeeeccceeccccccCCCCE--E-EEEeCCC--cEEEEcCCCCCceeeEeecccccceEEEecCCCEEE
Q 001042 823 IRGHAGAITALHCVTKREVWDLVGDREDAGF--F-ISGSTDC--LVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVV 897 (1178)
Q Consensus 823 l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~--L-asgs~Dg--~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~ 897 (1178)
+..+...+.+=+|| |||+. + .+...+| .|.+.++.......+..+.+... ...|+|||+.|+
T Consensus 180 lt~~~~~~~sP~wS------------PDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~-~p~wSPDG~~La 246 (428)
T PRK01029 180 LTQEHSLSITPTWM------------HIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQL-MPTFSPRKKLLA 246 (428)
T ss_pred cccCCCCcccceEc------------cCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCcc-ceEECCCCCEEE
Confidence 43344445555665 89875 2 2444444 46666766333333344444332 247899999988
Q ss_pred EEeC-----CCcEEEEECCCC---cEEEEecCCCCceEEEEEe-CCCeEEEEe-CCCeEEEE--eCCC-CeEEEEecCCC
Q 001042 898 SGSD-----DQSVLVWDKQTS---QLLEELKGHDAQVSCVRML-SGERVLTAS-HDGTVKMW--DVRT-DTCVATVGRCS 964 (1178)
Q Consensus 898 sgs~-----dg~I~iwd~~t~---~~~~~l~~h~~~V~~l~~~-~~~~l~sgs-~dg~V~iw--d~~~-~~~~~~~~~~~ 964 (1178)
..+. +..+..|++.++ +......++.......+|+ +|..|+..+ .+|...+| ++.. +.....+....
T Consensus 247 f~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~ 326 (428)
T PRK01029 247 FISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKY 326 (428)
T ss_pred EEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCC
Confidence 7653 223444777653 3333333333445677898 677677555 46655555 4432 23334444444
Q ss_pred CCEEEEEEeCCCCEEEEEeCC---CeEEEEECCCCceEEEEecCCccEEEEEEc--CCEEEEEe-C--CCcEEEEEcCCC
Q 001042 965 SAVLCMEYDDSTGILAAGGRD---AVANIWDIRAGRQMHKFLGHTKWIRSIRMD--RDTVITGS-D--DWTARMWSISRG 1036 (1178)
Q Consensus 965 ~~I~~l~~sp~~~~l~sgs~d---g~I~lwD~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sgs-~--dg~I~iwd~~~~ 1036 (1178)
..+....|+|||+.|+..+.+ ..|.+||+.+++..... .....+....|+ ++.++..+ . ++.|++||+..+
T Consensus 327 ~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt-~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 327 RNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT-TSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITK 405 (428)
T ss_pred CCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc-CCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 567789999999998876543 47999999988764333 223345667774 45555433 2 356888898877
Q ss_pred eeeeEeccCCCcEEEEEEecCC
Q 001042 1037 TCDAVLACHAGPVQCVEYSSSD 1058 (1178)
Q Consensus 1037 ~~~~~~~~h~~~I~~l~~spdg 1058 (1178)
+...... ..+.+...+|+|-.
T Consensus 406 ~~~~Lt~-~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 406 KTRKIVI-GSGEKRFPSWGAFP 426 (428)
T ss_pred CEEEeec-CCCcccCceecCCC
Confidence 6544333 44556777887753
No 300
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.70 E-value=3.3e-05 Score=84.42 Aligned_cols=263 Identities=10% Similarity=0.166 Sum_probs=170.4
Q ss_pred CCcEEEEECCCC--cEE-EEecCCCCceEEEEEe-CCCeEEEEeC---CCeEEEEeCCC--CeEE--EEecCCCCCEEEE
Q 001042 902 DQSVLVWDKQTS--QLL-EELKGHDAQVSCVRML-SGERVLTASH---DGTVKMWDVRT--DTCV--ATVGRCSSAVLCM 970 (1178)
Q Consensus 902 dg~I~iwd~~t~--~~~-~~l~~h~~~V~~l~~~-~~~~l~sgs~---dg~V~iwd~~~--~~~~--~~~~~~~~~I~~l 970 (1178)
++-|.+|++.+. +.. ...-.+.+..+-++|+ +.+.+.++.. +|.|..|.+.. |+.. .........-+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 567999998743 221 1223466778889999 5557777654 47777776654 5432 2222233444889
Q ss_pred EEeCCCCEEEEEeC-CCeEEEEECCC-CceE--EEEecCCcc----------EEEEEEc--CCEEEEEe-CCCcEEEEEc
Q 001042 971 EYDDSTGILAAGGR-DAVANIWDIRA-GRQM--HKFLGHTKW----------IRSIRMD--RDTVITGS-DDWTARMWSI 1033 (1178)
Q Consensus 971 ~~sp~~~~l~sgs~-dg~I~lwD~~~-~~~~--~~~~~~~~~----------v~~l~~~--~~~l~sgs-~dg~I~iwd~ 1033 (1178)
+++++|++++++.. .|.|.++-++. |... .....|.+. +....++ ++++++.+ .-..|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 99999999998874 58899999865 3321 122234333 5555664 44666665 3347999999
Q ss_pred CCCeeeeEec---cCCCcEEEEEEecCCCEEEEEe-CCCcEEEEECCC--CceEEEEEecc------cCC--cEEEEecC
Q 001042 1034 SRGTCDAVLA---CHAGPVQCVEYSSSDRGIITGS-SDGLLRFWENDD--GGIKCVKNVTI------HSS--AILSINAG 1099 (1178)
Q Consensus 1034 ~~~~~~~~~~---~h~~~I~~l~~spdg~~L~sgs-~Dg~I~iwd~~~--~~~~~~~~~~~------h~~--~i~~is~d 1099 (1178)
..|+....-. .....-..+.|+|++++....+ -+++|.+|..+. ++...++.+.. ... .-..+++|
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d 254 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD 254 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence 9775533211 2344568999999999876655 689999999987 55555544431 112 23455899
Q ss_pred CCEEEEEeC-CCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCC-CcEEEEECC
Q 001042 1100 DHWLGIGAA-DNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRN-GLLRLWEAT 1175 (1178)
Q Consensus 1100 g~~Lasgs~-Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~D-g~V~IWdv~ 1175 (1178)
|++|.++.. ...|.+|.+.. .+..+ .+......+...-++..|+++|++|+.++.| ..|.++.++
T Consensus 255 GrFLYasNRg~dsI~~f~V~~--------~~g~L---~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 255 GRFLYASNRGHDSIAVFSVDP--------DGGKL---ELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERD 321 (346)
T ss_pred CCEEEEecCCCCeEEEEEEcC--------CCCEE---EEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence 999998754 34788888763 22222 3444444455557888999999999999865 468888765
No 301
>KOG3823 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.67 E-value=1e-06 Score=96.61 Aligned_cols=346 Identities=13% Similarity=0.188 Sum_probs=194.8
Q ss_pred ccccccccccCCCCCCCCCCCCCCcccCCCceEEeecCCCCCCCCCCCceeEEEE---EcCCCCeEEEEEEEecCCCCHH
Q 001042 34 LSSVLDQFPPLNHSLYTPPPPQLSTCVLPAGVQFYSSGFDSDDPSTFPRTYPIVL---TEGDGSKIYVSCISFRDPVSED 110 (1178)
Q Consensus 34 ~p~vl~~yP~~~~~~~~~~~~~v~~fc~P~g~~~~~~~~~~~~~~~~p~~f~fvl---T~~~g~~~Yg~cl~f~e~~~~~ 110 (1178)
-|+|-+-||.-..-++|..=+.+|...+|+|---+- ..-++|+.-. .+ |...+||+.- |+++..+
T Consensus 24 GpeIE~~~~~pe~~~~p~~W~~LPflaLPDGsHsfe---------edfvyFtLp~~~~Pn-DegtifgvSC--~RQi~~~ 91 (630)
T KOG3823|consen 24 GPEIEFSHPSPERNECPSGWKYLPFLALPDGSHSFE---------EDFVYFTLPSLYEPN-DEGTIFGVSC--YRQIRVE 91 (630)
T ss_pred CCceeeecCCCCcCcCccccccCcceecCCCccccc---------cceEEEecccccCCC-CCccEEEEEe--ehhhhhh
Confidence 377888887544445666667889999999963211 1122333322 12 2335787632 2333221
Q ss_pred -HHHhccCCCCccCCeEEEEEcCCChHHHHHHHHHHHHHHhhccCC-CCccHHHHHHhhcccCCCCCCCCceEEeeeccc
Q 001042 111 -IAEAYRIPANSFADKCICLVSRSPSFRILRNALEEIYSLCFLSDG-SSKPLWDVISHLVSNVPLPTPGKNRVLFAIENC 188 (1178)
Q Consensus 111 -~~~~~~~~~~~~~~~~icllS~~p~~~~f~~~L~~i~~~~~~~~~-~~~~~~~~i~~~l~~~p~P~~g~~~~~~~~~~~ 188 (1178)
+......-....+.|++|+|+|.|-|.-.+.=|..+-+..+.... ....+.+-..+-|..+-.|.--+
T Consensus 92 ~Lk~~~~DvTRStVQKavvVi~r~PifG~IkdkL~iVtnAfF~QgDFs~~~~l~~~y~~l~a~~~~~l~R---------- 161 (630)
T KOG3823|consen 92 KLKIRTADVTRSTVQKAVVVIARLPIFGYIKDKLAIVTNAFFDQGDFSGTELLAKAYQQLNACLQDDLSR---------- 161 (630)
T ss_pred hhcccccccchhhhheeEEEEEcCCccceehhhhHHhhhhhhcccCcccHHHHHHHHHHHHhhcchhhhc----------
Confidence 111111112345789999999999999999988888776654221 11222222222222221111100
Q ss_pred eeEEeCCCCCCCCCCCc-chHHHhccCChhhHHHHHHHHhccccEEEEeCCcchHHHHHHHHHHcc--------------
Q 001042 189 LLSVEAPPKEGLPHADI-SFQPLVQLLDVDNLITLFTAVLLERRILLRSNKYSLLTLVSEAICHLI-------------- 253 (1178)
Q Consensus 189 ~~~~~~p~~~~lp~~~~-~~~~l~~~l~~~~~l~l~~~~L~E~~il~~s~~~~~ls~~~~al~~ll-------------- 253 (1178)
+|.. .+- .+. ++..++... -.|.+-|+.++|+++|||++.+....|.....+|.+||
T Consensus 162 -----~~e~-~~h-IgL~nLr~il~~w-r~naLvLlK~~lL~krIvvyg~~ve~lcnlq~gl~SLIP~~Ms~lqDs~sp~ 233 (630)
T KOG3823|consen 162 -----RPER-HFH-IGLSNLREILLHW-RHNALVLLKLMLLQKRIVVYGSPVEQLCNLQLGLASLIPSPMSDLQDSLSPE 233 (630)
T ss_pred -----chhh-hee-ehHHHHHHHHHHH-HHhHHHHHHHHHhcceEEEeCCcHHHHHHHHHHHHHhcCCcchhhhcccChh
Confidence 0100 000 010 122222222 35788899999999999999999999998888888876
Q ss_pred ---------------------------cccC---CCceeecccchhhhhhccCCc--ceEEeecCCCCccccCCCcEEEE
Q 001042 254 ---------------------------YPFR---WQHVYIPLLFFSGVDYIDAPT--PYMMGLHSGVDTSNLAMDGVVVV 301 (1178)
Q Consensus 254 ---------------------------~Pf~---w~~~~IP~lP~~l~~~l~aP~--P~iiGv~~~~~~~~~~~~~~~~v 301 (1178)
+|+. =-..|-|.+|..+++.|++|+ -|+||............-++++|
T Consensus 234 a~~~e~~L~~vaS~~~sd~~slla~~GfPl~IF~~G~lfsPYtpLq~m~~l~~~~~ls~~iGtsNtL~~~~~~~~~~~vv 313 (630)
T KOG3823|consen 234 AQEAEAELEAVASVAASDEQSLLASAGFPLSIFASGNLFSPYTPLQYMDLLSDPMVLSYVIGTSNTLFQQKRQLADVLVV 313 (630)
T ss_pred HHHHHHhhccchhhhcccHHHHHHhcCCceeeeccCcccCCCCchHHHhhhcccceeEeeecCchHHHHHhhhhccEEEE
Confidence 2322 235678999999999999986 57888654333333444568899
Q ss_pred EcCCCeeeCCCC--CCCC--C---chhhhhhHHHHHHhcCCCcccccccCCCCCCcccccccCCCCchhhhHHHHHHHHH
Q 001042 302 DLEYNRICTTEE--IPPI--P---EPELSSLRGDILKLLYPNVVGIDRMNAGGSSEHYSKVCSKPWGEEHDLQLRFIFLK 374 (1178)
Q Consensus 302 dlD~~~i~~~~~--~~~l--P---~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~Fl~ 374 (1178)
.-|+.++..-+. .+.+ . +++...+..+.... .+... +-.+.-+.=||+-|--
T Consensus 314 ~~dt~~~d~~Dptl~~~l~Ls~~Dk~wme~I~s~v~ss-------l~~E~--------------p~FEGSedwIR~QFe~ 372 (630)
T KOG3823|consen 314 IEDTANLDAHDPTLRRQLVLSTEDKRWMEYIMSHVQSS-------LPKED--------------PEFEGSEDWIREQFEG 372 (630)
T ss_pred ecCcccccccCcchhcceeeecccHHHHHHHHHHhhhc-------Ccccc--------------cCcCChHHHHHHHHHH
Confidence 999888866432 1111 1 11111221111000 00000 0012345679999999
Q ss_pred HHHHHHhh--HHhccccCCccCcChHHHhcccccCCCCCCchHHHHHHHHhhHHHHHHc
Q 001042 375 FLASILGG--YRNFIENTGTQVFNAQAFLKKRSRSTNQPPDPMITQFLDSQGFLDYLER 431 (1178)
Q Consensus 375 ~~~~ll~~--y~~~l~~~~~~~F~~~~Fl~~~~~~~~~~~~~F~~~f~~tq~F~~Fie~ 431 (1178)
++.-||.. |.+|+....+.....-.++-+-+- ..-+...|+..|.+||-|..|-+.
T Consensus 373 Yi~glL~tvk~~d~l~Kq~DsiLsqyhylpstsc-~~~fn~~f~~~wk~Tq~F~iwn~~ 430 (630)
T KOG3823|consen 373 YILGLLRTVKAPDALPKQKDSILSQYHYLPSTSC-NDHFNAHFMGAWKRTQCFQIWNDV 430 (630)
T ss_pred HHHHHHHHhhccccccccchhhHhhhhhccCCCh-hhhhhHHHHHHHHhhceeehhhcc
Confidence 88888763 445665444444444345444221 123456899999999999988543
No 302
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.65 E-value=3e-06 Score=87.89 Aligned_cols=222 Identities=12% Similarity=-0.006 Sum_probs=148.5
Q ss_pred eCCCcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEEeCCCcEEEEECCCCcEEE-EecCCCCceEEEEEe--CC
Q 001042 858 STDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLE-ELKGHDAQVSCVRML--SG 934 (1178)
Q Consensus 858 s~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~-~l~~h~~~V~~l~~~--~~ 934 (1178)
+....|-+|+.-.+....+...+|-.-.-.++.-...+|+.||..|...+|...+.+... ....|...|+-+.=. ..
T Consensus 49 ~~t~sv~i~~~y~N~~~iv~~y~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~ 128 (344)
T KOG4532|consen 49 SKTISVPINSHYSNPKGIVEFYTGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLK 128 (344)
T ss_pred cceeeeEeccccCCchhhEEeeecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccc
Confidence 344568888876444444444444333333444556789999999999999998765433 333444444333211 23
Q ss_pred CeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-ce-EEE-EecCCccEEE
Q 001042 935 ERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAG-RQ-MHK-FLGHTKWIRS 1011 (1178)
Q Consensus 935 ~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~-~~-~~~-~~~~~~~v~~ 1011 (1178)
..+..++.|.++++.++..+..........-.+.+++++++++++++.+....|..|.+... +. ++. .....+.-.+
T Consensus 129 ~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~ 208 (344)
T KOG4532|consen 129 FPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFY 208 (344)
T ss_pred cceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCcee
Confidence 45778888999999988765443333222234889999999999999999999999988653 22 332 2233344556
Q ss_pred EEEcC--CEEEEEeCCCcEEEEEcCCCeeee-----EeccCCCcEEEEEEecCCC--EEEEEeCCCcEEEEECCCCc
Q 001042 1012 IRMDR--DTVITGSDDWTARMWSISRGTCDA-----VLACHAGPVQCVEYSSSDR--GIITGSSDGLLRFWENDDGG 1079 (1178)
Q Consensus 1012 l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~-----~~~~h~~~I~~l~~spdg~--~L~sgs~Dg~I~iwd~~~~~ 1079 (1178)
.+|+. ..+|+++.||++.|||++...... +-..|.+.+..+.|++.|. +|...-.-+.+.+.|++++.
T Consensus 209 ~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 209 NSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV 285 (344)
T ss_pred eeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc
Confidence 66744 489999999999999998753322 2235889999999998664 34444456779999999874
No 303
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.62 E-value=0.00017 Score=79.01 Aligned_cols=260 Identities=14% Similarity=0.176 Sum_probs=165.4
Q ss_pred CCcEEEEcCCCCCceee-Eeeccccc--ceEEEecCCCEEEEEeC---CCcEEEEECCC--CcEEE--EecCCCCceEEE
Q 001042 860 DCLVKIWDPSLRGSELR-ATLKGHTR--TVRAINSDRGKVVSGSD---DQSVLVWDKQT--SQLLE--ELKGHDAQVSCV 929 (1178)
Q Consensus 860 Dg~I~iWd~~~~~~~~~-~~l~~h~~--~V~~~s~d~~~l~sgs~---dg~I~iwd~~t--~~~~~--~l~~h~~~V~~l 929 (1178)
++-|.+|+++...+++. ..+-.+.. .-.+++++++.|.++.. +|.|..|.++. |+... .......+-+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 45699999874443332 11222222 23378999999988855 47777777664 54422 222233344777
Q ss_pred EEe-CCCeEEEEe-CCCeEEEEeCCC-CeE---EEEecCCCCC----------EEEEEEeCCCCEEEEEeC-CCeEEEEE
Q 001042 930 RML-SGERVLTAS-HDGTVKMWDVRT-DTC---VATVGRCSSA----------VLCMEYDDSTGILAAGGR-DAVANIWD 992 (1178)
Q Consensus 930 ~~~-~~~~l~sgs-~dg~V~iwd~~~-~~~---~~~~~~~~~~----------I~~l~~sp~~~~l~sgs~-dg~I~lwD 992 (1178)
+.+ ++..++++. ..|.|.++-++. |.. +... .|.+. +....+.|+++++++..- --.|.+|+
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~-~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~ 173 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVV-KHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYD 173 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeee-ecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEE
Confidence 777 666777765 468899998865 332 2222 22222 788999999999988763 34799999
Q ss_pred CCCCceEEEE---ecCCccEEEEEEcCC--EE-EEEeCCCcEEEEEcCCC-eeeeEecc---------CCCcEEEEEEec
Q 001042 993 IRAGRQMHKF---LGHTKWIRSIRMDRD--TV-ITGSDDWTARMWSISRG-TCDAVLAC---------HAGPVQCVEYSS 1056 (1178)
Q Consensus 993 ~~~~~~~~~~---~~~~~~v~~l~~~~~--~l-~sgs~dg~I~iwd~~~~-~~~~~~~~---------h~~~I~~l~~sp 1056 (1178)
+..|+....- .........|.|+++ +. ++.--+++|.+|..... .....++. ...+...+..++
T Consensus 174 ~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~ 253 (346)
T COG2706 174 LDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP 253 (346)
T ss_pred cccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC
Confidence 9977653321 134456778889665 33 34456899999998773 22222221 234577889999
Q ss_pred CCCEEEEEeC-CCcEEEEECCC--CceEEEEEecc--cCCcEEEEecCCCEEEEEeCC-CcEEEEEcCCC
Q 001042 1057 SDRGIITGSS-DGLLRFWENDD--GGIKCVKNVTI--HSSAILSINAGDHWLGIGAAD-NSMSLFHRPQE 1120 (1178)
Q Consensus 1057 dg~~L~sgs~-Dg~I~iwd~~~--~~~~~~~~~~~--h~~~i~~is~dg~~Lasgs~D-g~I~iwd~~~~ 1120 (1178)
||++|.++.. ...|.++.++. +.+..+..... ...+-..++++|++|+++..+ .+|.+|.++..
T Consensus 254 dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 254 DGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKE 323 (346)
T ss_pred CCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence 9999988752 34677887753 44444444333 334456778999999888765 56999988643
No 304
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.61 E-value=3e-05 Score=82.29 Aligned_cols=218 Identities=11% Similarity=0.166 Sum_probs=126.6
Q ss_pred EEeCCCeEEEEeCCCeEEEEeCCCC--eEEEE---ecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEec
Q 001042 930 RMLSGERVLTASHDGTVKMWDVRTD--TCVAT---VGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLG 1004 (1178)
Q Consensus 930 ~~~~~~~l~sgs~dg~V~iwd~~~~--~~~~~---~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~ 1004 (1178)
+.+++..+++.-.|..|.+-..+.. .++.+ -+.....-+.++||||+..||.+...|+|+++|+.... +..+..
T Consensus 4 ~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~p 82 (282)
T PF15492_consen 4 ALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIPP 82 (282)
T ss_pred eecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eEEcCc
Confidence 3444555566666777777665543 12222 23334456889999999999999999999999987533 323221
Q ss_pred -------CCccEEEEEE-----cCC---EEEEEeCCCcEEEEEcCCC-----eeeeEec---cCCCcEEEEEEecCCCEE
Q 001042 1005 -------HTKWIRSIRM-----DRD---TVITGSDDWTARMWSISRG-----TCDAVLA---CHAGPVQCVEYSSSDRGI 1061 (1178)
Q Consensus 1005 -------~~~~v~~l~~-----~~~---~l~sgs~dg~I~iwd~~~~-----~~~~~~~---~h~~~I~~l~~spdg~~L 1061 (1178)
....|..+.| +.. .|++-..+|.++-|-+..+ +...++. .+...|+++.++|..+.|
T Consensus 83 ~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LL 162 (282)
T PF15492_consen 83 AMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLL 162 (282)
T ss_pred ccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEE
Confidence 1235566656 111 5667777888877765332 2233333 246789999999999988
Q ss_pred EEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE-----ecCCCEEEEEeCCCc------EEEEEcCCCccccccCCCC
Q 001042 1062 ITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI-----NAGDHWLGIGAADNS------MSLFHRPQERLGGFSGTGS 1130 (1178)
Q Consensus 1062 ~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i-----s~dg~~Lasgs~Dg~------I~iwd~~~~~~~~~~~~g~ 1130 (1178)
+.||.... +++. -......++++ +|....+. ...|+. -.+|.+.+.
T Consensus 163 lVgG~~~~------~~~~------s~a~~~GLtaWRiL~~~Pyyk~v~-~~~~~~~~~~~~~~~~~~~~~---------- 219 (282)
T PF15492_consen 163 LVGGCEQN------QDGM------SKASSCGLTAWRILSDSPYYKQVT-SSEDDITASSKRRGLLRIPSF---------- 219 (282)
T ss_pred EEeccCCC------CCcc------ccccccCceEEEEcCCCCcEEEcc-ccCccccccccccceeeccce----------
Confidence 87774322 0100 00111122222 12222211 111211 122332211
Q ss_pred CccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001042 1131 KMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATI 1176 (1178)
Q Consensus 1131 ~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~t 1176 (1178)
............|..|..||||+.||+...+|.|.+|++.+
T Consensus 220 -----~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPs 260 (282)
T PF15492_consen 220 -----KFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPS 260 (282)
T ss_pred -----eeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCc
Confidence 11111123356799999999999999999999999999864
No 305
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.59 E-value=4.2e-05 Score=100.25 Aligned_cols=227 Identities=11% Similarity=0.125 Sum_probs=146.5
Q ss_pred CCCEEEEEeCCCcEEEEcCCCCCceeeEeecc--cc--------------cceEEEecCCCEEEEEe-CCCcEEEEECCC
Q 001042 850 DAGFFISGSTDCLVKIWDPSLRGSELRATLKG--HT--------------RTVRAINSDRGKVVSGS-DDQSVLVWDKQT 912 (1178)
Q Consensus 850 d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~--h~--------------~~V~~~s~d~~~l~sgs-~dg~I~iwd~~t 912 (1178)
++.++++-+.++.|++||.. +... ....+ .. ..=.++.++++.|+++. ..+.|+++|..+
T Consensus 579 ~g~lyVaDs~n~rI~v~d~~--G~~i-~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~ 655 (1057)
T PLN02919 579 NNRLFISDSNHNRIVVTDLD--GNFI-VQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVN 655 (1057)
T ss_pred CCeEEEEECCCCeEEEEeCC--CCEE-EEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCC
Confidence 56778888888999999965 3222 22221 10 01125677777666554 457899999887
Q ss_pred CcEEEEecCC-----------------CCceEEEEEeC--CCeEEEEeCCCeEEEEeCCCCeEEEEec--------C---
Q 001042 913 SQLLEELKGH-----------------DAQVSCVRMLS--GERVLTASHDGTVKMWDVRTDTCVATVG--------R--- 962 (1178)
Q Consensus 913 ~~~~~~l~~h-----------------~~~V~~l~~~~--~~~l~sgs~dg~V~iwd~~~~~~~~~~~--------~--- 962 (1178)
+.. .++.+. -..-+.+++++ +..+++.+.++.|++||..++....... +
T Consensus 656 ~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~ 734 (1057)
T PLN02919 656 ETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSG 734 (1057)
T ss_pred CEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCcc
Confidence 653 333210 11235788874 4456666778999999998776432110 0
Q ss_pred ---CCCCEEEEEEeCCCCEE-EEEeCCCeEEEEECCCCceEEEEec-------------C--------CccEEEEEEc--
Q 001042 963 ---CSSAVLCMEYDDSTGIL-AAGGRDAVANIWDIRAGRQMHKFLG-------------H--------TKWIRSIRMD-- 1015 (1178)
Q Consensus 963 ---~~~~I~~l~~sp~~~~l-~sgs~dg~I~lwD~~~~~~~~~~~~-------------~--------~~~v~~l~~~-- 1015 (1178)
.-.....++++|+++.+ ++.+.++.|++||+.++.......+ . -.....++++
T Consensus 735 ~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~d 814 (1057)
T PLN02919 735 TSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKD 814 (1057)
T ss_pred ccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCC
Confidence 01234679999999855 4555678999999987653211100 0 0123466664
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeEec-------------cCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCce
Q 001042 1016 RDTVITGSDDWTARMWSISRGTCDAVLA-------------CHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGI 1080 (1178)
Q Consensus 1016 ~~~l~sgs~dg~I~iwd~~~~~~~~~~~-------------~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~ 1080 (1178)
++.+++-+.++.|++||..++....... +.-.....++++++|+.+++-+.++.|++||+.+++.
T Consensus 815 G~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 815 GQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 4577778889999999998776543221 1112567899999999999988999999999998753
No 306
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.54 E-value=9.1e-07 Score=91.36 Aligned_cols=185 Identities=14% Similarity=0.192 Sum_probs=112.3
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEE------------EEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEE-E
Q 001042 893 RGKVVSGSDDQSVLVWDKQTSQLL------------EELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCV-A 958 (1178)
Q Consensus 893 ~~~l~sgs~dg~I~iwd~~t~~~~------------~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~-~ 958 (1178)
...|+++..++.+......++.+. +.+..|+++-.+-+.+ .++.+++++.||.+.+.+.+....+ .
T Consensus 47 ~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~ 126 (319)
T KOG4714|consen 47 EYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMS 126 (319)
T ss_pred hheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhh
Confidence 345666666666655554433332 2233333333333333 5778999999999999997652111 1
Q ss_pred EecCCCCCEEEEEEeCCCCEEEEEe-----CCCeEEEEECCCCceEEEEecCCccEEEEEEcCC---EEEEEeCCCcEEE
Q 001042 959 TVGRCSSAVLCMEYDDSTGILAAGG-----RDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD---TVITGSDDWTARM 1030 (1178)
Q Consensus 959 ~~~~~~~~I~~l~~sp~~~~l~sgs-----~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~---~l~sgs~dg~I~i 1030 (1178)
.+......-.+.++...++.+.+++ .-+..+.|+++..+....-......|.+++-++. .+++|+.||.+.+
T Consensus 127 ~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l 206 (319)
T KOG4714|consen 127 RIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGL 206 (319)
T ss_pred hcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEE
Confidence 1111111112233333444444432 1234555665543332222222334777777553 8899999999999
Q ss_pred EEcCCCee-eeEeccCCCcEEEEEEecC-CCEEEEEeCCCcEEEEECCC
Q 001042 1031 WSISRGTC-DAVLACHAGPVQCVEYSSS-DRGIITGSSDGLLRFWENDD 1077 (1178)
Q Consensus 1031 wd~~~~~~-~~~~~~h~~~I~~l~~spd-g~~L~sgs~Dg~I~iwd~~~ 1077 (1178)
||.++... ...+..|+.+|+.+.|+|. +..|++++.||.+.-||..+
T Consensus 207 ~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 207 WDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred EEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 99998743 3456789999999999995 56799999999999999875
No 307
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=5.6e-06 Score=91.62 Aligned_cols=274 Identities=18% Similarity=0.198 Sum_probs=187.6
Q ss_pred ccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCC-CCceeeEeecccccceEE--EecCCCEEEEEeC
Q 001042 825 GHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSL-RGSELRATLKGHTRTVRA--INSDRGKVVSGSD 901 (1178)
Q Consensus 825 gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~-~~~~~~~~l~~h~~~V~~--~s~d~~~l~sgs~ 901 (1178)
-|...|+.+.. .-.+++.+++-||.++.|.-.. .+.+.+..+..|...+.+ .+.++..+.|++.
T Consensus 7 mhrd~i~hv~~-------------tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d 73 (558)
T KOG0882|consen 7 MHRDVITHVFP-------------TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVED 73 (558)
T ss_pred cccceeeeEee-------------ehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccC
Confidence 37788888765 3578999999999999998664 455666777788887774 4788989999777
Q ss_pred -CCcEEEEECCCCcEEEEecC--CCCceEEEEEeCCC---eEE-EEeCCCeEEEEeCCCCeE--EEEecCCCCCEEEEEE
Q 001042 902 -DQSVLVWDKQTSQLLEELKG--HDAQVSCVRMLSGE---RVL-TASHDGTVKMWDVRTDTC--VATVGRCSSAVLCMEY 972 (1178)
Q Consensus 902 -dg~I~iwd~~t~~~~~~l~~--h~~~V~~l~~~~~~---~l~-sgs~dg~V~iwd~~~~~~--~~~~~~~~~~I~~l~~ 972 (1178)
|..++++|+++-..+.-++. -.+.+.++ .+.|+ .++ +.-.+|.+.++|-..+.+ ...-.-|..+|..+.+
T Consensus 74 ~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y 152 (558)
T KOG0882|consen 74 PDHSVKVFDVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRY 152 (558)
T ss_pred cccceeEEEeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEe
Confidence 99999999987655533331 12222221 12332 233 334578999999876543 2333458899999999
Q ss_pred eCCCCEEEEEeCCCeEEEEECCC------CceEEE---------EecCCccEEEEEE--cCCEEEEEeCCCcEEEEEcCC
Q 001042 973 DDSTGILAAGGRDAVANIWDIRA------GRQMHK---------FLGHTKWIRSIRM--DRDTVITGSDDWTARMWSISR 1035 (1178)
Q Consensus 973 sp~~~~l~sgs~dg~I~lwD~~~------~~~~~~---------~~~~~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~ 1035 (1178)
++.+..+.+....|.|.-|.... .+.... +........++.+ ++..+.+-+.|..|++++.++
T Consensus 153 ~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~Kt 232 (558)
T KOG0882|consen 153 NQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKT 232 (558)
T ss_pred eccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEecc
Confidence 99999999999999999999873 111111 1223345566666 556888888999999999998
Q ss_pred CeeeeEecc--------------------------------CC-CcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEE
Q 001042 1036 GTCDAVLAC--------------------------------HA-GPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKC 1082 (1178)
Q Consensus 1036 ~~~~~~~~~--------------------------------h~-~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~ 1082 (1178)
|+.++.+.. |. ..-+.+.|+..|++|+.|+-=| |++.++.++ .+
T Consensus 233 GklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn--~v 309 (558)
T KOG0882|consen 233 GKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTN--TV 309 (558)
T ss_pred chhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecC--eE
Confidence 866544321 11 1235678889999999988766 889999887 33
Q ss_pred EEEecc---------------------------cCCcEEEEecCCCEEEEEeCCCcEEEE
Q 001042 1083 VKNVTI---------------------------HSSAILSINAGDHWLGIGAADNSMSLF 1115 (1178)
Q Consensus 1083 ~~~~~~---------------------------h~~~i~~is~dg~~Lasgs~Dg~I~iw 1115 (1178)
++.+.. ..++...+.+|...++++-..+.++++
T Consensus 310 ~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 310 VRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPLLEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred EEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCcccccCCCCeEEEeeeecceEEEE
Confidence 333211 111222234567778888888888888
No 308
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.46 E-value=6.9e-07 Score=92.22 Aligned_cols=183 Identities=15% Similarity=0.169 Sum_probs=114.9
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCCceeeEee-cccccce-EEEecCCCEEEEEeC-----CCcEEEEECCCCcEEEEecC
Q 001042 849 EDAGFFISGSTDCLVKIWDPSLRGSELRATL-KGHTRTV-RAINSDRGKVVSGSD-----DQSVLVWDKQTSQLLEELKG 921 (1178)
Q Consensus 849 ~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l-~~h~~~V-~~~s~d~~~l~sgs~-----dg~I~iwd~~t~~~~~~l~~ 921 (1178)
-.++-+++|..||.+.+.+.+. ........ ..|.+.. .++...++.+.+++. -+..+.|+++..+....-..
T Consensus 99 ~~~t~V~~~~~dg~~~v~s~~~-~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~ 177 (319)
T KOG4714|consen 99 MTDNRVCIGYADGSLAVFSTDK-DLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK 177 (319)
T ss_pred ccCCceEecCCCceEEEEechH-HHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccc
Confidence 5578899999999999999652 11111111 1121111 123344444444332 23455666554333222222
Q ss_pred CCCceEEEEEe--CCCeEEEEeCCCeEEEEeCCCCeE-EEEecCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCc
Q 001042 922 HDAQVSCVRML--SGERVLTASHDGTVKMWDVRTDTC-VATVGRCSSAVLCMEYDD-STGILAAGGRDAVANIWDIRAGR 997 (1178)
Q Consensus 922 h~~~V~~l~~~--~~~~l~sgs~dg~V~iwd~~~~~~-~~~~~~~~~~I~~l~~sp-~~~~l~sgs~dg~I~lwD~~~~~ 997 (1178)
....|++++-+ ..+.+++|+.||.+.+||.+.... ...+..|+.+++.+-|+| ++..|++++.||.+..||..+.-
T Consensus 178 ~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~ 257 (319)
T KOG4714|consen 178 ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTF 257 (319)
T ss_pred ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCce
Confidence 23348888877 466788999999999999998743 345678999999999999 67889999999999999987421
Q ss_pred e-----------------EEE-------EecCCccEEEEEEcCCEEEEEeCCCcEEEEE
Q 001042 998 Q-----------------MHK-------FLGHTKWIRSIRMDRDTVITGSDDWTARMWS 1032 (1178)
Q Consensus 998 ~-----------------~~~-------~~~~~~~v~~l~~~~~~l~sgs~dg~I~iwd 1032 (1178)
. ++. +......|+++...+..+++|+.-+-|++++
T Consensus 258 l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 258 LSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred EEecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence 1 110 0111224455555677888888888787765
No 309
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.46 E-value=2.1e-05 Score=81.74 Aligned_cols=228 Identities=7% Similarity=-0.014 Sum_probs=154.4
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEE---ecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCc
Q 001042 849 EDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI---NSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQ 925 (1178)
Q Consensus 849 ~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~---s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~ 925 (1178)
..-.+||.||..|...+|...... ........|...|.-. .-....+..++.|.++++.+++-+..........-.
T Consensus 82 ~kc~~la~gG~~g~fd~~~~~tn~-~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~ 160 (344)
T KOG4532|consen 82 NKCVTLADGGASGQFDLFACNTND-GHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLT 160 (344)
T ss_pred ccccEEEeccccceeeeecccCcc-cceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccc
Confidence 456689999999999999987333 3334455555555422 223345677888888888887654432222212233
Q ss_pred eEEEEEe-CCCeEEEEeCCCeEEEEeCCCCe--EEE-EecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceE--
Q 001042 926 VSCVRML-SGERVLTASHDGTVKMWDVRTDT--CVA-TVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQM-- 999 (1178)
Q Consensus 926 V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~--~~~-~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~-- 999 (1178)
+.+++++ ++...++.+....|-.|.+.... .+. ......+.-.+..|+.....+|++..||++.+||++.....
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~ 240 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA 240 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh
Confidence 7788888 67788888888999999886532 222 23334455678899999999999999999999999975432
Q ss_pred ---EEEecCCccEEEEEEcC----CEEEEEeCCCcEEEEEcCCCeeeeEec-------cCCC-cEEEEEEecCCCEEEEE
Q 001042 1000 ---HKFLGHTKWIRSIRMDR----DTVITGSDDWTARMWSISRGTCDAVLA-------CHAG-PVQCVEYSSSDRGIITG 1064 (1178)
Q Consensus 1000 ---~~~~~~~~~v~~l~~~~----~~l~sgs~dg~I~iwd~~~~~~~~~~~-------~h~~-~I~~l~~spdg~~L~sg 1064 (1178)
.+-..|.+.+..+.|+. +.|+..-.-+.+.+.|++++...+.+. .|.. .|....|+.++..+.+.
T Consensus 241 ~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~ 320 (344)
T KOG4532|consen 241 EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVK 320 (344)
T ss_pred hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccc
Confidence 22345888999999963 266666667889999999986554432 2333 37888888877776666
Q ss_pred eCCCcEEEEECCCC
Q 001042 1065 SSDGLLRFWENDDG 1078 (1178)
Q Consensus 1065 s~Dg~I~iwd~~~~ 1078 (1178)
+.+. +.=|++.+.
T Consensus 321 ~e~~-~ae~ni~sr 333 (344)
T KOG4532|consen 321 NELQ-GAEYNILSR 333 (344)
T ss_pred cchh-hheeecccc
Confidence 5443 556666554
No 310
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.44 E-value=5e-06 Score=91.36 Aligned_cols=152 Identities=17% Similarity=0.262 Sum_probs=108.8
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCcE----EEEecCCCCceEEEEEe-CCCeEEE---EeCCCeEEEEeCCCCeEEEEec
Q 001042 890 NSDRGKVVSGSDDQSVLVWDKQTSQL----LEELKGHDAQVSCVRML-SGERVLT---ASHDGTVKMWDVRTDTCVATVG 961 (1178)
Q Consensus 890 s~d~~~l~sgs~dg~I~iwd~~t~~~----~~~l~~h~~~V~~l~~~-~~~~l~s---gs~dg~V~iwd~~~~~~~~~~~ 961 (1178)
+++++++|++..+....+++...... ...... ...-+++.+. +...... ++....+.+|....+.+.-. -
T Consensus 71 s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~-l 148 (390)
T KOG3914|consen 71 SDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPI-L 148 (390)
T ss_pred CCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchh-h
Confidence 57788888888888877777654332 222221 1222333333 3333333 34455666776665555444 4
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEE-ecCCccEEEEEEcC-CEEEEEeCCCcEEEEEcCCCeee
Q 001042 962 RCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKF-LGHTKWIRSIRMDR-DTVITGSDDWTARMWSISRGTCD 1039 (1178)
Q Consensus 962 ~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~-~~~~~~v~~l~~~~-~~l~sgs~dg~I~iwd~~~~~~~ 1039 (1178)
+|-+.++.++++||+++++++..|..|++-.....-.+..+ -||..-|..++..+ ..|++|+.|+++++||+.+|+++
T Consensus 149 GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 149 GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEEEEecccCCcc
Confidence 88899999999999999999999999999887766666554 47999999999954 46799999999999999999988
Q ss_pred eEec
Q 001042 1040 AVLA 1043 (1178)
Q Consensus 1040 ~~~~ 1043 (1178)
.++.
T Consensus 229 ~t~d 232 (390)
T KOG3914|consen 229 DTCD 232 (390)
T ss_pred cccc
Confidence 6654
No 311
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.43 E-value=0.00011 Score=78.19 Aligned_cols=219 Identities=13% Similarity=0.089 Sum_probs=129.9
Q ss_pred cCCCCEEEEEeCCCcEEEEcCCCCCceeeEeeccccc-----ceEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEecC-
Q 001042 848 REDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTR-----TVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKG- 921 (1178)
Q Consensus 848 s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~-----~V~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~- 921 (1178)
+.||++||.-- |..|.|=....+=...+.......+ .-.+||||+..||.+...|+|+++|+...+ +..+..
T Consensus 6 ~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~ 83 (282)
T PF15492_consen 6 SSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIPPA 83 (282)
T ss_pred cCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eEEcCcc
Confidence 37888887765 5567666544222222222222222 223789999999999999999999987533 333332
Q ss_pred ------CCCceEEEEEeC-------CCeEEEEeCCCeEEEEeCCCC-----eEEEEec---CCCCCEEEEEEeCCCCEEE
Q 001042 922 ------HDAQVSCVRMLS-------GERVLTASHDGTVKMWDVRTD-----TCVATVG---RCSSAVLCMEYDDSTGILA 980 (1178)
Q Consensus 922 ------h~~~V~~l~~~~-------~~~l~sgs~dg~V~iwd~~~~-----~~~~~~~---~~~~~I~~l~~sp~~~~l~ 980 (1178)
-...|..+.|.+ ...+++-..+|.++-|-+..+ +....+. .....|.++.++|..+.|+
T Consensus 84 ~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLl 163 (282)
T PF15492_consen 84 MSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLL 163 (282)
T ss_pred cccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEE
Confidence 235667777762 225777788888887775322 2233332 2467899999999999998
Q ss_pred EEeCCCeEEEEECCCCceEEEEecCCccEEEEEE---cCCEE-EEEeCCCc------EEEEEcCCCeeeeEeccCCCcEE
Q 001042 981 AGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM---DRDTV-ITGSDDWT------ARMWSISRGTCDAVLACHAGPVQ 1050 (1178)
Q Consensus 981 sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~---~~~~l-~sgs~dg~------I~iwd~~~~~~~~~~~~h~~~I~ 1050 (1178)
+||.... +++. -++....+++-.. .|.+. ++...|+. -.+|.+-+.+...........|.
T Consensus 164 VgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~ 233 (282)
T PF15492_consen 164 VGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIF 233 (282)
T ss_pred EeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceE
Confidence 8875432 0000 0011222333222 12222 22222221 12333332222111122456899
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEECCCC
Q 001042 1051 CVEYSSSDRGIITGSSDGLLRFWENDDG 1078 (1178)
Q Consensus 1051 ~l~~spdg~~L~sgs~Dg~I~iwd~~~~ 1078 (1178)
.|..||||..||+...+|.|.+|++.+-
T Consensus 234 kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 234 KMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred EEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 9999999999999999999999999875
No 312
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.40 E-value=0.00027 Score=85.88 Aligned_cols=262 Identities=15% Similarity=0.135 Sum_probs=158.8
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCceeeEeeccccc------ceE--EEecCC-CEEEEEeCCCcEEEEECCCCcEEEEecC
Q 001042 851 AGFFISGSTDCLVKIWDPSLRGSELRATLKGHTR------TVR--AINSDR-GKVVSGSDDQSVLVWDKQTSQLLEELKG 921 (1178)
Q Consensus 851 ~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~------~V~--~~s~d~-~~l~sgs~dg~I~iwd~~t~~~~~~l~~ 921 (1178)
+..+..++.++.|.-.|.... +.......... .+. ...-.+ ..++.++.+|.|.-+|.++|+.+.....
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG--~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~ 138 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATG--KVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGN 138 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCC--hhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecC
Confidence 445566667788888886522 22222211111 111 112223 7888899999999999999999988764
Q ss_pred CCCc-----eE-EEEEeCCCeEEEEe---------CCCeEEEEeCCCCeEEEEecCCCC--------------------C
Q 001042 922 HDAQ-----VS-CVRMLSGERVLTAS---------HDGTVKMWDVRTDTCVATVGRCSS--------------------A 966 (1178)
Q Consensus 922 h~~~-----V~-~l~~~~~~~l~sgs---------~dg~V~iwd~~~~~~~~~~~~~~~--------------------~ 966 (1178)
.... +. ...+ .+..++.++ .+|.+..+|..+|+.+........ .
T Consensus 139 ~~~~~~~~~i~ssP~v-~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 139 NDQVPPGYTMTGAPTI-VKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred CCCcCcceEecCCCEE-ECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 3321 11 1122 235555554 368899999999998877643211 0
Q ss_pred E-EEEEEeCCCCEEEEEeCCC------------------eEEEEECCCCceEEEEecCCcc-----------EEEEE-Ec
Q 001042 967 V-LCMEYDDSTGILAAGGRDA------------------VANIWDIRAGRQMHKFLGHTKW-----------IRSIR-MD 1015 (1178)
Q Consensus 967 I-~~l~~sp~~~~l~sgs~dg------------------~I~lwD~~~~~~~~~~~~~~~~-----------v~~l~-~~ 1015 (1178)
+ ...++++.+..++.++.++ .+.-+|.++|+....++..... +..+. .+
T Consensus 218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~ 297 (488)
T cd00216 218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKD 297 (488)
T ss_pred ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccC
Confidence 1 1345555677788887665 7999999999998876532111 11111 23
Q ss_pred CC---EEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEE------------------eCCCcEEEEE
Q 001042 1016 RD---TVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITG------------------SSDGLLRFWE 1074 (1178)
Q Consensus 1016 ~~---~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sg------------------s~Dg~I~iwd 1074 (1178)
+. .++.++.+|.+...|.++|+.+...... ...++.+| ..+..+ ..+|.+.-.|
T Consensus 298 g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD 372 (488)
T cd00216 298 GKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALD 372 (488)
T ss_pred CCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEe
Confidence 33 6788889999999999999988765421 11223333 222222 2357788888
Q ss_pred CCCCceEEEEEecccC------CcE--EEEecCCCEEEEEeCCCcEEEEEcCCC
Q 001042 1075 NDDGGIKCVKNVTIHS------SAI--LSINAGDHWLGIGAADNSMSLFHRPQE 1120 (1178)
Q Consensus 1075 ~~~~~~~~~~~~~~h~------~~i--~~is~dg~~Lasgs~Dg~I~iwd~~~~ 1120 (1178)
..+|+..-......+. ... ..+...+..+++|+.||.++.+|..++
T Consensus 373 ~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG 426 (488)
T cd00216 373 PKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTG 426 (488)
T ss_pred CCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCC
Confidence 8888544333332111 111 122346688999999999999999844
No 313
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.39 E-value=5.4e-06 Score=98.90 Aligned_cols=180 Identities=18% Similarity=0.256 Sum_probs=140.8
Q ss_pred CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEE
Q 001042 933 SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSI 1012 (1178)
Q Consensus 933 ~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l 1012 (1178)
++..++.|+....+..+|+++.+..+...-..+.|.-|+. +++.+.+|...|+|.+-|.++.+.++++..|.+.|.++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 5677888988889999999998887776555555666654 67889999999999999999999999999999999999
Q ss_pred EEcCCEEEEEeC---------CCcEEEEEcCCCeeeeEeccCCCcEEEEEEecC-CCEEEEEeCCCcEEEEECC---CCc
Q 001042 1013 RMDRDTVITGSD---------DWTARMWSISRGTCDAVLACHAGPVQCVEYSSS-DRGIITGSSDGLLRFWEND---DGG 1079 (1178)
Q Consensus 1013 ~~~~~~l~sgs~---------dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd-g~~L~sgs~Dg~I~iwd~~---~~~ 1079 (1178)
...|+.|++++. |..|++||++.-+.+.-+.-+.++ .-+.|+|. ...++.++..|...+-|.. +..
T Consensus 224 Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~ 302 (1118)
T KOG1275|consen 224 DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP 302 (1118)
T ss_pred eccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCc
Confidence 999999998874 566899999988777666655554 45677775 3568888889999999833 321
Q ss_pred eEEEEEecccCCcE--EEEecCCCEEEEEeCCCcEEEEE
Q 001042 1080 IKCVKNVTIHSSAI--LSINAGDHWLGIGAADNSMSLFH 1116 (1178)
Q Consensus 1080 ~~~~~~~~~h~~~i--~~is~dg~~Lasgs~Dg~I~iwd 1116 (1178)
..+..+..-...+ .++|++|+.+|.|..+|.|.+|.
T Consensus 303 -~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 303 -AGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred -cceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 1122222222324 55689999999999999999997
No 314
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=2e-05 Score=93.44 Aligned_cols=179 Identities=13% Similarity=0.153 Sum_probs=131.2
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCE
Q 001042 888 AINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAV 967 (1178)
Q Consensus 888 ~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I 967 (1178)
|..-.++.++-|+.+|.|++.+.. +.. .+...|... -..|.++++|+.||+|.|-.+-+++...++ ....++
T Consensus 44 ~~av~~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~-----~~~Gey~asCS~DGkv~I~sl~~~~~~~~~-df~rpi 115 (846)
T KOG2066|consen 44 CCAVHDKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS-----ILEGEYVASCSDDGKVVIGSLFTDDEITQY-DFKRPI 115 (846)
T ss_pred HHHhhcceeeeccccceEEEEecC-Ccc-ccccccccc-----ccCCceEEEecCCCcEEEeeccCCccceeE-ecCCcc
Confidence 344567899999999999999976 333 333344443 237999999999999999999888776665 346789
Q ss_pred EEEEEeCC-----CCEEEEEeCCCeEEEEECCC--CceEEEEecCCccEEEEEEcCCEEEEEeCCCcEEEEEcCCCeeee
Q 001042 968 LCMEYDDS-----TGILAAGGRDAVANIWDIRA--GRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDA 1040 (1178)
Q Consensus 968 ~~l~~sp~-----~~~l~sgs~dg~I~lwD~~~--~~~~~~~~~~~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~ 1040 (1178)
.+++++|+ .+.+++||..| +.++.-+= .+....+....++|.++.|.++++|-++.+| |++||+.+++.+.
T Consensus 116 ksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~lIAWand~G-v~vyd~~~~~~l~ 193 (846)
T KOG2066|consen 116 KSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGNLIAWANDDG-VKVYDTPTRQRLT 193 (846)
T ss_pred eeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCcEEEEecCCC-cEEEeccccceee
Confidence 99999997 56788999888 77765331 1112245567789999999999999998876 8999999988877
Q ss_pred EeccCCCc------EEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 001042 1041 VLACHAGP------VQCVEYSSSDRGIITGSSDGLLRFWENDDG 1078 (1178)
Q Consensus 1041 ~~~~h~~~------I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~ 1078 (1178)
.+...... -..+.|.++.+ |+.| ...+|++..++.+
T Consensus 194 ~i~~p~~~~R~e~fpphl~W~~~~~-LVIG-W~d~v~i~~I~~~ 235 (846)
T KOG2066|consen 194 NIPPPSQSVRPELFPPHLHWQDEDR-LVIG-WGDSVKICSIKKR 235 (846)
T ss_pred ccCCCCCCCCcccCCCceEecCCCe-EEEe-cCCeEEEEEEecc
Confidence 76643332 34577776654 4444 4556888888733
No 315
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.31 E-value=7.9e-05 Score=88.21 Aligned_cols=200 Identities=10% Similarity=0.085 Sum_probs=118.4
Q ss_pred CCCCCCCCCcccccCCcceEEEEecCCCCc-cccc-cc--c--eeecccccccCCCCCCCCCCCcCCcccccceEEeccc
Q 001042 753 DATNDDQQPAEASGIGRSWVQSMFSREASS-RSHS-FS--R--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGH 826 (1178)
Q Consensus 753 ~~~~~~~~~~~~~gh~~~i~~~aFSpdg~~-las~-~~--d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH 826 (1178)
|.+|.+.+.+.. + + ......|||||+. ++.. .. + |.++|+.+++. +.+...
T Consensus 175 d~dg~~~~~~~~-~-~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~--------------------~~lt~~ 231 (419)
T PRK04043 175 DYTLTYQKVIVK-G-G-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK--------------------EKIASS 231 (419)
T ss_pred CCCCCceeEEcc-C-C-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE--------------------EEEecC
Confidence 344454444333 2 2 5667799999985 5542 22 2 88999887761 222234
Q ss_pred ccceEEEEeeeccceeccccccCCCCEEEEE-eCC--CcEEEEcCCCCCceeeEeeccccc--ceEEEecCCCEEEEEeC
Q 001042 827 AGAITALHCVTKREVWDLVGDREDAGFFISG-STD--CLVKIWDPSLRGSELRATLKGHTR--TVRAINSDRGKVVSGSD 901 (1178)
Q Consensus 827 ~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasg-s~D--g~I~iWd~~~~~~~~~~~l~~h~~--~V~~~s~d~~~l~sgs~ 901 (1178)
.+.+....|+ |||+.++.. +.+ ..|.++|+. +... ..+..+.. .-..|+|||+.++..+.
T Consensus 232 ~g~~~~~~~S------------PDG~~la~~~~~~g~~~Iy~~dl~--~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sd 296 (419)
T PRK04043 232 QGMLVVSDVS------------KDGSKLLLTMAPKGQPDIYLYDTN--TKTL-TQITNYPGIDVNGNFVEDDKRIVFVSD 296 (419)
T ss_pred CCcEEeeEEC------------CCCCEEEEEEccCCCcEEEEEECC--CCcE-EEcccCCCccCccEECCCCCEEEEEEC
Confidence 4445556676 899877644 334 457777765 3333 22332322 22368999998877664
Q ss_pred C-C--cEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCC---------CeEEEEeCCCCeEEEEecCCCCCEE
Q 001042 902 D-Q--SVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHD---------GTVKMWDVRTDTCVATVGRCSSAVL 968 (1178)
Q Consensus 902 d-g--~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~d---------g~V~iwd~~~~~~~~~~~~~~~~I~ 968 (1178)
. + .|.++|+.+++..+.... ... ...|+ +++.++..+.. ..|.+.|+.++... .+... ....
T Consensus 297 r~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~ 371 (419)
T PRK04043 297 RLGYPNIFMKKLNSGSVEQVVFH-GKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQ 371 (419)
T ss_pred CCCCceEEEEECCCCCeEeCccC-CCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcC
Confidence 3 2 688889888776443321 111 23788 77777655543 36888898887653 33322 2233
Q ss_pred EEEEeCCCCEEEEEeCC---CeEEEEECCC
Q 001042 969 CMEYDDSTGILAAGGRD---AVANIWDIRA 995 (1178)
Q Consensus 969 ~l~~sp~~~~l~sgs~d---g~I~lwD~~~ 995 (1178)
...|+|||+.++..+.+ ..+.+.++..
T Consensus 372 ~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 372 FPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 58899999988776543 2355666643
No 316
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.31 E-value=0.0002 Score=84.80 Aligned_cols=208 Identities=8% Similarity=0.045 Sum_probs=123.0
Q ss_pred CeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCE-EEEEeC---CCeEEEEECCCCceEEEEecCCccEEEEEE--cCC
Q 001042 944 GTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGI-LAAGGR---DAVANIWDIRAGRQMHKFLGHTKWIRSIRM--DRD 1017 (1178)
Q Consensus 944 g~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~-l~sgs~---dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~--~~~ 1017 (1178)
..|.+-|..... .+.+.... ......|+|||+. ++..+. +..|+++|+.+++..... ...+......| +++
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGS 245 (419)
T ss_pred ceEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCC
Confidence 355555554333 23232333 7788999999985 554433 357999999888765443 23444445556 454
Q ss_pred EEE-EEeCC--CcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeC-CC--cEEEEECCCCceEEEEEecccCC
Q 001042 1018 TVI-TGSDD--WTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSS-DG--LLRFWENDDGGIKCVKNVTIHSS 1091 (1178)
Q Consensus 1018 ~l~-sgs~d--g~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~-Dg--~I~iwd~~~~~~~~~~~~~~h~~ 1091 (1178)
.++ +.+.+ ..|.++|+.+++. ..+..+.+......|+|||+.|+-.+. .| .|.+.|+.+++.+.+. ..+..
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt-~~g~~- 322 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV-FHGKN- 322 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCc-cCCCc-
Confidence 444 33333 4688888877764 334434433445689999998876653 23 5888888887543322 12222
Q ss_pred cEEEEecCCCEEEEEeCC---------CcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEE
Q 001042 1092 AILSINAGDHWLGIGAAD---------NSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICS 1162 (1178)
Q Consensus 1092 ~i~~is~dg~~Lasgs~D---------g~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las 1162 (1178)
...++|||+.++..+.. ..|.+.|+.++.. +.+.. .+ ......|+|||+.|+.
T Consensus 323 -~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-------------~~LT~-~~---~~~~p~~SPDG~~I~f 384 (419)
T PRK04043 323 -NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-------------RRLTA-NG---VNQFPRFSSDGGSIMF 384 (419)
T ss_pred -CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-------------EECCC-CC---CcCCeEECCCCCEEEE
Confidence 24789999998877654 2567777753321 11111 11 1234789999998876
Q ss_pred EeCC-Cc--EEEEECC
Q 001042 1163 GGRN-GL--LRLWEAT 1175 (1178)
Q Consensus 1163 ~s~D-g~--V~IWdv~ 1175 (1178)
.+.+ |. +.+.+++
T Consensus 385 ~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 385 IKYLGNQSALGIIRLN 400 (419)
T ss_pred EEccCCcEEEEEEecC
Confidence 6543 33 4455554
No 317
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.31 E-value=1.2e-06 Score=93.82 Aligned_cols=151 Identities=19% Similarity=0.306 Sum_probs=118.8
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCC-----eEEEEecCC
Q 001042 890 NSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTD-----TCVATVGRC 963 (1178)
Q Consensus 890 s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~-----~~~~~~~~~ 963 (1178)
+..+-. ++.+.+..|-+-|+++|-. ..+. ..+.|.++.|. .++.++.|+.+|.|..+|++.+ .+.+.+ -|
T Consensus 222 ni~gyh-fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh 297 (425)
T KOG2695|consen 222 NIMGYH-FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YH 297 (425)
T ss_pred ccceee-ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-Ec
Confidence 344445 5566677888999988754 3343 56788899998 5899999999999999999865 334444 57
Q ss_pred CCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCce---EEEEecCCccEEEEEE----cCCEEEEEeCCCcEEEEEcCC
Q 001042 964 SSAVLCMEYDD-STGILAAGGRDAVANIWDIRAGRQ---MHKFLGHTKWIRSIRM----DRDTVITGSDDWTARMWSISR 1035 (1178)
Q Consensus 964 ~~~I~~l~~sp-~~~~l~sgs~dg~I~lwD~~~~~~---~~~~~~~~~~v~~l~~----~~~~l~sgs~dg~I~iwd~~~ 1035 (1178)
.+.|+++..-. +++.|++.+.+|+|++||.+.-++ +.++.+|.+.-.-+-+ ....+++++.|...|||.++.
T Consensus 298 ~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ 377 (425)
T KOG2695|consen 298 DSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDS 377 (425)
T ss_pred CcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEeccc
Confidence 88899998877 888999999999999999998777 8888888765443333 345888999999999999999
Q ss_pred CeeeeEecc
Q 001042 1036 GTCDAVLAC 1044 (1178)
Q Consensus 1036 ~~~~~~~~~ 1044 (1178)
|..+.++..
T Consensus 378 ghLl~tipf 386 (425)
T KOG2695|consen 378 GHLLCTIPF 386 (425)
T ss_pred CceeeccCC
Confidence 999888764
No 318
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.29 E-value=0.0005 Score=83.58 Aligned_cols=270 Identities=13% Similarity=0.190 Sum_probs=156.1
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEecCCCC------ce--EEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCCC
Q 001042 893 RGKVVSGSDDQSVLVWDKQTSQLLEELKGHDA------QV--SCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCS 964 (1178)
Q Consensus 893 ~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~------~V--~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~ 964 (1178)
+..++.++.++.+.-.|..+|+.+..+..... .+ ..+...+++.++.++.+|.|..+|.++|+.+.......
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~ 140 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGNND 140 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence 55677788889999999999998877654332 11 11122233788899999999999999999988775433
Q ss_pred CC--EEEEEEeC--CCCEEEEEe---------CCCeEEEEECCCCceEEEEecCCc--------------------cEE-
Q 001042 965 SA--VLCMEYDD--STGILAAGG---------RDAVANIWDIRAGRQMHKFLGHTK--------------------WIR- 1010 (1178)
Q Consensus 965 ~~--I~~l~~sp--~~~~l~sgs---------~dg~I~lwD~~~~~~~~~~~~~~~--------------------~v~- 1010 (1178)
.. -..+.-+| .+..++.++ .+|.+..+|..+|+.+.++..... .+.
T Consensus 141 ~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~ 220 (488)
T cd00216 141 QVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWA 220 (488)
T ss_pred CcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccC
Confidence 21 00111111 124455554 368899999999998877654211 011
Q ss_pred EEEEc--CCEEEEEeCCC------------------cEEEEEcCCCeeeeEecc--CCC----cEEEEEEe----cCCC-
Q 001042 1011 SIRMD--RDTVITGSDDW------------------TARMWSISRGTCDAVLAC--HAG----PVQCVEYS----SSDR- 1059 (1178)
Q Consensus 1011 ~l~~~--~~~l~sgs~dg------------------~I~iwd~~~~~~~~~~~~--h~~----~I~~l~~s----pdg~- 1059 (1178)
+.+++ .+.++.++.++ .+.-+|..+|+.+...+. |.. ......+. -+|.
T Consensus 221 ~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~ 300 (488)
T cd00216 221 SPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKP 300 (488)
T ss_pred CeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCe
Confidence 22333 46788887665 799999999999887652 211 00001111 1333
Q ss_pred --EEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEEecCCCEEEEEe------------------CCCcEEEEEcCC
Q 001042 1060 --GIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSINAGDHWLGIGA------------------ADNSMSLFHRPQ 1119 (1178)
Q Consensus 1060 --~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~Lasgs------------------~Dg~I~iwd~~~ 1119 (1178)
.++.++.+|.+...|..+|+..-........ .+.++ ..+..++ .+|.+.-.|..+
T Consensus 301 ~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~~---~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~t 375 (488)
T cd00216 301 VPAIVHAPKNGFFYVLDRTTGKLISARPEVEQP---MAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKT 375 (488)
T ss_pred eEEEEEECCCceEEEEECCCCcEeeEeEeeccc---cccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCC
Confidence 5778889999999999999544333322111 11122 2232221 245666666653
Q ss_pred CccccccCCCCCccceeEeeccCCCc----ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 001042 1120 ERLGGFSGTGSKMSGWQLYRTPQKTV----AVVRCIASDLERKRICSGGRNGLLRLWEATINI 1178 (1178)
Q Consensus 1120 ~~~~~~~~~g~~~~~~~~~~~~~~h~----~~V~~lafspdg~~Las~s~Dg~V~IWdv~tg~ 1178 (1178)
++ . .|+.......+. .....-...-.+..|+.++.||.|+.+|.+||+
T Consensus 376 G~---------~--~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~ 427 (488)
T cd00216 376 GK---------V--VWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGK 427 (488)
T ss_pred Cc---------E--eeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCc
Confidence 32 1 222211100000 001000011246778888999999999999884
No 319
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.29 E-value=1.1e-05 Score=85.06 Aligned_cols=230 Identities=13% Similarity=0.322 Sum_probs=153.5
Q ss_pred ceEEE--ecCCCEEEEEeCCCcEEEEECCCCc-----EEEEecCCC------------CceEEEEEe-C--CCeEEEEeC
Q 001042 885 TVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQ-----LLEELKGHD------------AQVSCVRML-S--GERVLTASH 942 (1178)
Q Consensus 885 ~V~~~--s~d~~~l~sgs~dg~I~iwd~~t~~-----~~~~l~~h~------------~~V~~l~~~-~--~~~l~sgs~ 942 (1178)
.|+++ ...|.++++|...|.|.++.-+... ....+++|. ..|..+.|. + ...++..+.
T Consensus 28 ~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstN 107 (460)
T COG5170 28 KITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTN 107 (460)
T ss_pred eeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecC
Confidence 44444 5678899999999999999754432 223455554 357788887 2 346888899
Q ss_pred CCeEEEEeCCCCe-------------------------------------EE-----EEe-cCCCCCEEEEEEeCCCCEE
Q 001042 943 DGTVKMWDVRTDT-------------------------------------CV-----ATV-GRCSSAVLCMEYDDSTGIL 979 (1178)
Q Consensus 943 dg~V~iwd~~~~~-------------------------------------~~-----~~~-~~~~~~I~~l~~sp~~~~l 979 (1178)
|.+|++|.+.... .+ +.. ..|...+.++.++.|...+
T Consensus 108 dktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~ 187 (460)
T COG5170 108 DKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETL 187 (460)
T ss_pred CceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchhee
Confidence 9999999874320 00 000 2345567789999888888
Q ss_pred EEEeCCCeEEEEECCCCce---EEEEecCC-----ccEEEEEEcCC---EEEEEeCCCcEEEEEcCCCee------ee--
Q 001042 980 AAGGRDAVANIWDIRAGRQ---MHKFLGHT-----KWIRSIRMDRD---TVITGSDDWTARMWSISRGTC------DA-- 1040 (1178)
Q Consensus 980 ~sgs~dg~I~lwD~~~~~~---~~~~~~~~-----~~v~~l~~~~~---~l~sgs~dg~I~iwd~~~~~~------~~-- 1040 (1178)
+++ .|-.|.+|++.-... +..++.|. .-|++..|++. .+.-.+..|.|++-|++.... +.
T Consensus 188 lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~ 266 (460)
T COG5170 188 LSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFEL 266 (460)
T ss_pred eec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhh
Confidence 765 577899999864332 22233332 35677777654 677788899999999984311 10
Q ss_pred --------EeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccC------------CcE-----EE
Q 001042 1041 --------VLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHS------------SAI-----LS 1095 (1178)
Q Consensus 1041 --------~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~------------~~i-----~~ 1095 (1178)
-+.+-...|..+.|+++|+++++-+ --+|++||++..+ .+++++..|. ..| .+
T Consensus 267 ~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k-~pikTi~~h~~l~~~l~d~YEnDaifdkFeis 344 (460)
T COG5170 267 TIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAK-NPIKTIPMHCDLMDELNDVYENDAIFDKFEIS 344 (460)
T ss_pred ccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEeccccc-CCceeechHHHHHHHHHhhhhccceeeeEEEE
Confidence 1112234688899999999999875 4679999998764 6677765543 223 23
Q ss_pred EecCCCEEEEEeCCCcEEEEEc
Q 001042 1096 INAGDHWLGIGAADNSMSLFHR 1117 (1178)
Q Consensus 1096 is~dg~~Lasgs~Dg~I~iwd~ 1117 (1178)
+|.|.+.+.+|+..+..-++-.
T Consensus 345 fSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 345 FSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred ecCCcccccccccccceeeecc
Confidence 4677788888888777777653
No 320
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.28 E-value=0.0012 Score=68.96 Aligned_cols=257 Identities=16% Similarity=0.147 Sum_probs=136.6
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceE-EEecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEE
Q 001042 851 AGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR-AINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCV 929 (1178)
Q Consensus 851 ~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~-~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l 929 (1178)
|++++.|+..|.+++-+.+++......... ..-.+. .+.+++..+..|+.|++.+..|..+..++...+-..+...+-
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~-~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP 141 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVIL-ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSP 141 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeeh-hhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccc
Confidence 778999999999999998733232222222 223333 357899999999999999999999998888766433333333
Q ss_pred EEeC-CCeEEEEeCCCeEEEEeCCCCe--EEEEecCCCCCEEE--EEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEec
Q 001042 930 RMLS-GERVLTASHDGTVKMWDVRTDT--CVATVGRCSSAVLC--MEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLG 1004 (1178)
Q Consensus 930 ~~~~-~~~l~sgs~dg~V~iwd~~~~~--~~~~~~~~~~~I~~--l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~ 1004 (1178)
+... +..+..+...|.|.--+.+++. .+.... ..+++.+ ++ -+..+..+.-||.+.-+| ..|+++.++.
T Consensus 142 ~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~-~~~PiF~splc---v~~sv~i~~VdG~l~~f~-~sG~qvwr~~- 215 (354)
T KOG4649|consen 142 VIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAAT-RFGPIFASPLC---VGSSVIITTVDGVLTSFD-ESGRQVWRPA- 215 (354)
T ss_pred eecCCCceEEEEeccceEEEEccCCCCcceehhhh-cCCccccCcee---ccceEEEEEeccEEEEEc-CCCcEEEeec-
Confidence 3332 3445666666666555554442 111111 1122211 11 133455566677777776 5566655442
Q ss_pred CCccEE-----------EEEE-cCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEe-c---CCCEEEEEeCCC
Q 001042 1005 HTKWIR-----------SIRM-DRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYS-S---SDRGIITGSSDG 1068 (1178)
Q Consensus 1005 ~~~~v~-----------~l~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~s-p---dg~~L~sgs~Dg 1068 (1178)
..++|. .+.+ +.+.+.+......-.+|..++|...+.... +-...+++ + ..+++..++.||
T Consensus 216 t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t~~vy~~---p~l~F~~h~~~~S~~~ll~~~s~dg 292 (354)
T KOG4649|consen 216 TKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSGTTLHVYLS---PKLRFDLHSPGISYPKLLRRSSGDG 292 (354)
T ss_pred CCCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCCcEEEEEeC---cccceeccCCCCcchhhhhhhcCCC
Confidence 222222 1222 222222222222334566666543333221 10111221 1 134577788899
Q ss_pred cEEEEE---------CCCCceEEEEEecccCCcEEEEec--CCCEEEEEeCCCcEEEEEcCC
Q 001042 1069 LLRFWE---------NDDGGIKCVKNVTIHSSAILSINA--GDHWLGIGAADNSMSLFHRPQ 1119 (1178)
Q Consensus 1069 ~I~iwd---------~~~~~~~~~~~~~~h~~~i~~is~--dg~~Lasgs~Dg~I~iwd~~~ 1119 (1178)
++.+.- -+.++...+..++-.. .|.+ || -+..|..|+.|..++-||+.+
T Consensus 293 kv~il~~~~sl~~~~s~~g~lq~~~~~el~~-eIFs-SPvii~grl~igcRDdYv~cldl~~ 352 (354)
T KOG4649|consen 293 KVMILMTSKSLAEISSNGGELQNLEAIELSN-EIFS-SPVIIDGRLLIGCRDDYVRCLDLDT 352 (354)
T ss_pred cEEEEEecccccccccCCCccceEEEeecCc-cccc-CCeEEccEEEEEEccCeEEEEeccc
Confidence 988883 3334333333222111 1111 12 124577889999999999873
No 321
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.27 E-value=7.6e-06 Score=89.98 Aligned_cols=152 Identities=18% Similarity=0.243 Sum_probs=103.9
Q ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEECCCCce----EEEEecCCccEEEEEE--cCCEEEE---EeCCCcEEEEEcCCCe
Q 001042 967 VLCMEYDDSTGILAAGGRDAVANIWDIRAGRQ----MHKFLGHTKWIRSIRM--DRDTVIT---GSDDWTARMWSISRGT 1037 (1178)
Q Consensus 967 I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~----~~~~~~~~~~v~~l~~--~~~~l~s---gs~dg~I~iwd~~~~~ 1037 (1178)
...+..+++++++|++..+....+++.+.... .... .-...-+++.+ +...... .++...+.+|....+.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 44556778899999998888877777765443 1111 11122223333 2223333 3344556666655544
Q ss_pred eeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEe-cccCCcEEEEe-cCCCEEEEEeCCCcEEEE
Q 001042 1038 CDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNV-TIHSSAILSIN-AGDHWLGIGAADNSMSLF 1115 (1178)
Q Consensus 1038 ~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~-~~h~~~i~~is-~dg~~Lasgs~Dg~I~iw 1115 (1178)
+ ..+-||-+.++.++|+||+++|+++..|+.|++-..... ..+..+ -||..-|..++ -++..|++||.|+++++|
T Consensus 144 ~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~--f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~W 220 (390)
T KOG3914|consen 144 C-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPAT--FVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLW 220 (390)
T ss_pred c-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcc--cchhhhccccHhheeeeeeccCceeeecCCCCcEEEE
Confidence 4 345579999999999999999999999999999876654 223333 46998888886 566778999999999999
Q ss_pred EcCCCcc
Q 001042 1116 HRPQERL 1122 (1178)
Q Consensus 1116 d~~~~~~ 1122 (1178)
|+.+++.
T Consensus 221 d~~sgk~ 227 (390)
T KOG3914|consen 221 DITSGKL 227 (390)
T ss_pred ecccCCc
Confidence 9997654
No 322
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.27 E-value=1.7e-05 Score=83.68 Aligned_cols=208 Identities=14% Similarity=0.247 Sum_probs=132.6
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-----eEEEEecCCc------------cEEEEEEc----CCEEEE
Q 001042 963 CSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGR-----QMHKFLGHTK------------WIRSIRMD----RDTVIT 1021 (1178)
Q Consensus 963 ~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~-----~~~~~~~~~~------------~v~~l~~~----~~~l~s 1021 (1178)
....|+++.|...|.++++|...|.|.+|.-.... -...+++|.. .|..+.|- .+.++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 34678999999999999999999999999865433 1233455532 56677772 236777
Q ss_pred EeCCCcEEEEEcCCCee-------------------------------------e-----eEe-ccCCCcEEEEEEecCC
Q 001042 1022 GSDDWTARMWSISRGTC-------------------------------------D-----AVL-ACHAGPVQCVEYSSSD 1058 (1178)
Q Consensus 1022 gs~dg~I~iwd~~~~~~-------------------------------------~-----~~~-~~h~~~I~~l~~spdg 1058 (1178)
.+.|.+|++|.+..... + +.. ..|.-.|+++.+..|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 88999999998753200 0 001 2466678899999999
Q ss_pred CEEEEEeCCCcEEEEECCCCc-eEEEEEecccCC-----cEE--EEecC-CCEEEEEeCCCcEEEEEcCCCccccccCCC
Q 001042 1059 RGIITGSSDGLLRFWENDDGG-IKCVKNVTIHSS-----AIL--SINAG-DHWLGIGAADNSMSLFHRPQERLGGFSGTG 1129 (1178)
Q Consensus 1059 ~~L~sgs~Dg~I~iwd~~~~~-~~~~~~~~~h~~-----~i~--~is~d-g~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g 1129 (1178)
..++++ .|-.|.+|++.-.. .-.+..+..|.. -|+ .++|. ...+.-.+..|.|++.|+....+.. ..
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcd---n~ 260 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCD---NS 260 (460)
T ss_pred heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhcc---Cc
Confidence 888877 57889999886431 011222223321 122 22443 3566667788999999987432211 00
Q ss_pred CCccceeEe------eccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001042 1130 SKMSGWQLY------RTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATIN 1177 (1178)
Q Consensus 1130 ~~~~~~~~~------~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~tg 1177 (1178)
.++ ++.. .-+.+-...|.++.|+++|+++++-+. -+|+|||+...
T Consensus 261 ~kl--fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~ 311 (460)
T COG5170 261 KKL--FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMA 311 (460)
T ss_pred hhh--hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccc
Confidence 000 0100 011223356889999999999987753 58999998754
No 323
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.27 E-value=1.9e-06 Score=64.81 Aligned_cols=39 Identities=23% Similarity=0.408 Sum_probs=37.0
Q ss_pred eeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001042 1135 WQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWE 1173 (1178)
Q Consensus 1135 ~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWd 1173 (1178)
|++..++.+|.+.|++++|+|++++|++|+.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 477888999999999999999999999999999999997
No 324
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.25 E-value=1.6e-05 Score=94.96 Aligned_cols=180 Identities=14% Similarity=0.202 Sum_probs=140.0
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEE
Q 001042 891 SDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCM 970 (1178)
Q Consensus 891 ~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l 970 (1178)
.++..++.|+....+..+|+.+.+..+...-..+.|+-+.. ++..+.+|...|+|.+-|.++.+.++++..|.+.|..+
T Consensus 145 ~~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~-Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 145 MGPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY-NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred cCCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe-cCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 46778888988889999999998887776655555666654 57789999999999999999999999999999998866
Q ss_pred EEeCCCCEEEEEeC---------CCeEEEEECCCCceEEEEecCCccEEEEEEcC---CEEEEEeCCCcEEEEEc---CC
Q 001042 971 EYDDSTGILAAGGR---------DAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR---DTVITGSDDWTARMWSI---SR 1035 (1178)
Q Consensus 971 ~~sp~~~~l~sgs~---------dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~---~~l~sgs~dg~I~iwd~---~~ 1035 (1178)
.. .|+.|+++|. |.-|++||++..+.+.-+.-+.++ .-+.+.| ..+++++..|...+-|. .+
T Consensus 224 Dv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 224 DV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred ec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCC
Confidence 54 6888888874 455899999988776555444433 3344444 47899999999999993 33
Q ss_pred C-eeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEE
Q 001042 1036 G-TCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWE 1074 (1178)
Q Consensus 1036 ~-~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd 1074 (1178)
. .-+..+....+.+.++++|++|+.++.|..+|.|.+|.
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 2 12223333455699999999999999999999999997
No 325
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.22 E-value=3.3e-06 Score=90.52 Aligned_cols=142 Identities=15% Similarity=0.309 Sum_probs=111.7
Q ss_pred EEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-----ceEEEEecCCccEEEE
Q 001042 938 LTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAG-----RQMHKFLGHTKWIRSI 1012 (1178)
Q Consensus 938 ~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~-----~~~~~~~~~~~~v~~l 1012 (1178)
++.+.+-.|-+-|+.+|... .+ ...+.|.++.|...++++..|..+|.|..+|++.+ .+.+.+ -|...|+++
T Consensus 228 fs~G~sqqv~L~nvetg~~q-sf-~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtsl 304 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ-SF-QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSL 304 (425)
T ss_pred ecccccceeEEEEeeccccc-cc-ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhh
Confidence 56666778889999887643 23 25678899999999999999999999999999875 233333 578888887
Q ss_pred EE---cCCEEEEEeCCCcEEEEEcCCCee---eeEeccCCCcEEEE--EEecCCCEEEEEeCCCcEEEEECCCCceEE
Q 001042 1013 RM---DRDTVITGSDDWTARMWSISRGTC---DAVLACHAGPVQCV--EYSSSDRGIITGSSDGLLRFWENDDGGIKC 1082 (1178)
Q Consensus 1013 ~~---~~~~l~sgs~dg~I~iwd~~~~~~---~~~~~~h~~~I~~l--~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~ 1082 (1178)
.. ++.+|++.+.+|+|.+||.+--++ +.++.+|.+.-.-+ ...+....+++++.|-..+||.+++|.+.+
T Consensus 305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ 382 (425)
T KOG2695|consen 305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLC 382 (425)
T ss_pred hhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceee
Confidence 64 778999999999999999987776 88888886643333 345667788999999999999999994433
No 326
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.21 E-value=0.0026 Score=70.12 Aligned_cols=214 Identities=14% Similarity=0.084 Sum_probs=131.6
Q ss_pred EEEEe--CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEe-CCCCEEEEEeCCCeEEEEECCCCceEEEEec
Q 001042 928 CVRML--SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYD-DSTGILAAGGRDAVANIWDIRAGRQMHKFLG 1004 (1178)
Q Consensus 928 ~l~~~--~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~s-p~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~ 1004 (1178)
+..|. .+..+++-...+.|..||..+++..... ... ...+++. +++. ++++..++ +.++|..+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~-~~~--~~G~~~~~~~g~-l~v~~~~~-~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID-LPG--PNGMAFDRPDGR-LYVADSGG-IAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE-SSS--EEEEEEECTTSE-EEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe-cCC--CceEEEEccCCE-EEEEEcCc-eEEEecCCCcEEEEeec
Confidence 45676 3455556557899999999888764322 222 7788888 5654 55555544 56669988865443332
Q ss_pred -----CCccEEEEEEcCC--EEEEEeCC--------CcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEE-EEeCCC
Q 001042 1005 -----HTKWIRSIRMDRD--TVITGSDD--------WTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGII-TGSSDG 1068 (1178)
Q Consensus 1005 -----~~~~v~~l~~~~~--~l~sgs~d--------g~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~-sgs~Dg 1068 (1178)
.....+.++++++ ..++.... |.|..++.. ++...... .-...+.++|+|+++.|+ +-+..+
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTT
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccc
Confidence 3456778888544 44444432 557777766 55443333 345678999999999775 556788
Q ss_pred cEEEEECCCCc--eEEEE---EecccC--CcEEEEecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeecc
Q 001042 1069 LLRFWENDDGG--IKCVK---NVTIHS--SAILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTP 1141 (1178)
Q Consensus 1069 ~I~iwd~~~~~--~~~~~---~~~~h~--~~i~~is~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~ 1141 (1178)
.|..++++... ..... .+.... ..=.++..+|++.++....+.|.+++.. | +++...
T Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~----------G------~~~~~i 220 (246)
T PF08450_consen 157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD----------G------KLLREI 220 (246)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT----------S------CEEEEE
T ss_pred eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC----------c------cEEEEE
Confidence 89999986432 22222 222222 1225667889988888888999999975 2 222222
Q ss_pred CCCcccEEEEEE-cCCCCEEEEEe
Q 001042 1142 QKTVAVVRCIAS-DLERKRICSGG 1164 (1178)
Q Consensus 1142 ~~h~~~V~~laf-spdg~~Las~s 1164 (1178)
.-....+++++| -++.+.|...+
T Consensus 221 ~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 221 ELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp E-SSSSEEEEEEESTTSSEEEEEE
T ss_pred cCCCCCEEEEEEECCCCCEEEEEe
Confidence 222336899999 47766665543
No 327
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=2.5e-05 Score=86.61 Aligned_cols=245 Identities=15% Similarity=0.134 Sum_probs=167.8
Q ss_pred cceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceecccc
Q 001042 769 RSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVG 846 (1178)
Q Consensus 769 ~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~ 846 (1178)
+.++.-.|-.-.+++.+++-| ++.|--..-. .-.-++.+..|-+.|.+++.+
T Consensus 9 rd~i~hv~~tka~fiiqASlDGh~KFWkKs~is----------------GvEfVKhFraHL~~I~sl~~S---------- 62 (558)
T KOG0882|consen 9 RDVITHVFPTKAKFIIQASLDGHKKFWKKSRIS----------------GVEFVKHFRAHLGVILSLAVS---------- 62 (558)
T ss_pred cceeeeEeeehhheEEeeecchhhhhcCCCCcc----------------ceeehhhhHHHHHHHHhhhcc----------
Confidence 344444555566788888888 9999644211 112567788999999999887
Q ss_pred ccCCCCEEEEEeC-CCcEEEEcCCCCCceeeEeecccccceEEEecCCC---EE-EEEeCCCcEEEEECCCCc--EEEEe
Q 001042 847 DREDAGFFISGST-DCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRG---KV-VSGSDDQSVLVWDKQTSQ--LLEEL 919 (1178)
Q Consensus 847 ~s~d~~~Lasgs~-Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~---~l-~sgs~dg~I~iwd~~t~~--~~~~l 919 (1178)
.|+.++.|++. |..++++|+..........+..-.+.+..+...|. .+ ++.-.+|.+.++|-...- ....-
T Consensus 63 --~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fk 140 (558)
T KOG0882|consen 63 --YDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFK 140 (558)
T ss_pred --ccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceec
Confidence 88999999888 99999999874333323344444555555555452 23 334467899999965433 33334
Q ss_pred cCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCC------CeEEEEe---------cCCCCCEEEEEEeCCCCEEEEEe
Q 001042 920 KGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRT------DTCVATV---------GRCSSAVLCMEYDDSTGILAAGG 983 (1178)
Q Consensus 920 ~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~------~~~~~~~---------~~~~~~I~~l~~sp~~~~l~sgs 983 (1178)
.-|..+|.++.++ .++.+++....|.|..|.... ++....+ ........++.++|+|..+.+-+
T Consensus 141 klH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~ 220 (558)
T KOG0882|consen 141 KLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN 220 (558)
T ss_pred ccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccC
Confidence 5699999999998 688888999999999998763 1111111 22345678999999999999999
Q ss_pred CCCeEEEEECCCCceEEEEec--------------------------------CCc-cEEEEEE--cCCEEEEEeCCCcE
Q 001042 984 RDAVANIWDIRAGRQMHKFLG--------------------------------HTK-WIRSIRM--DRDTVITGSDDWTA 1028 (1178)
Q Consensus 984 ~dg~I~lwD~~~~~~~~~~~~--------------------------------~~~-~v~~l~~--~~~~l~sgs~dg~I 1028 (1178)
.|..|++++.++|+.++.+.. |.. .-+.+.| ++++++-|+-=| |
T Consensus 221 ~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-i 299 (558)
T KOG0882|consen 221 PDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-I 299 (558)
T ss_pred cccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-E
Confidence 999999999999876554321 111 1123334 456777776554 7
Q ss_pred EEEEcCCCeeeeEe
Q 001042 1029 RMWSISRGTCDAVL 1042 (1178)
Q Consensus 1029 ~iwd~~~~~~~~~~ 1042 (1178)
++.++.++++.+.+
T Consensus 300 kvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 300 KVINLDTNTVVRIL 313 (558)
T ss_pred EEEEeecCeEEEEe
Confidence 88888888776654
No 328
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=0.00022 Score=85.47 Aligned_cols=205 Identities=16% Similarity=0.266 Sum_probs=138.1
Q ss_pred ceEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCc-eEEEEEeCC-CeEEEEeCCC-----eEEEEeCCCC---
Q 001042 885 TVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQ-VSCVRMLSG-ERVLTASHDG-----TVKMWDVRTD--- 954 (1178)
Q Consensus 885 ~V~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~-V~~l~~~~~-~~l~sgs~dg-----~V~iwd~~~~--- 954 (1178)
.+.++++.+..++.|+.+|.|.+.+- +-+.+..++.+... |..+...++ +.+++.+.|+ .+++||++.-
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence 78899999999999999999888763 34555778777777 554544444 5677777664 4899998642
Q ss_pred ---eEE---EEec----CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC----CCceEEEEecCCccEEEEEE--cCCE
Q 001042 955 ---TCV---ATVG----RCSSAVLCMEYDDSTGILAAGGRDAVANIWDIR----AGRQMHKFLGHTKWIRSIRM--DRDT 1018 (1178)
Q Consensus 955 ---~~~---~~~~----~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~----~~~~~~~~~~~~~~v~~l~~--~~~~ 1018 (1178)
.++ +.+. ....++.+++.+.+-+.+++|-.+|.|..+.-. .|....-......+|+.+++ ++..
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s 185 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKS 185 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCce
Confidence 233 1111 135678999999999999999999999988532 11112222234568999998 4444
Q ss_pred EEEEeCCCcEEEEEcCCCee-eeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEec-ccCCcE
Q 001042 1019 VITGSDDWTARMWSISRGTC-DAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVT-IHSSAI 1093 (1178)
Q Consensus 1019 l~sgs~dg~I~iwd~~~~~~-~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~-~h~~~i 1093 (1178)
++-...-..|.+|.+....+ ...+..|...++|..+++....+++++ +..+.+|+.+.. .....+. +|....
T Consensus 186 ~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~--~~cfaf~~g~kk~~ 259 (933)
T KOG2114|consen 186 VLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGR--GPCFAFEVGEKKEM 259 (933)
T ss_pred eEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCc--ceeeeecCCCeEEE
Confidence 23333445799999884442 445777888999999988766566665 445999998754 3334444 554433
No 329
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.15 E-value=0.00014 Score=90.23 Aligned_cols=237 Identities=13% Similarity=0.134 Sum_probs=143.4
Q ss_pred CCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEE
Q 001042 923 DAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHK 1001 (1178)
Q Consensus 923 ~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~ 1001 (1178)
...|.++.|. +++.++.+..+|.|.+-|..+.... ........|.+++|+||+..++..+.++++.+-+ .+..++..
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT-~~f~~i~E 145 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMT-KDFEPIAE 145 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEe-ccccchhc
Confidence 3578888888 7888999999999999988776532 2334578899999999999999999887776543 33333322
Q ss_pred EecC-----CccEEEEEEcCC-EEEEEeCCCcEEEEEcCCCee-eeEeccCCCcEEEEEEecCCCEEEEEe----CC-Cc
Q 001042 1002 FLGH-----TKWIRSIRMDRD-TVITGSDDWTARMWSISRGTC-DAVLACHAGPVQCVEYSSSDRGIITGS----SD-GL 1069 (1178)
Q Consensus 1002 ~~~~-----~~~v~~l~~~~~-~l~sgs~dg~I~iwd~~~~~~-~~~~~~h~~~I~~l~~spdg~~L~sgs----~D-g~ 1069 (1178)
..-+ .+..-.+-|... .=+-|+ .|.....+...... ..... ..+.=+++.|--||.++++.. .+ ..
T Consensus 146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs-~gr~~~~~~~~~ek~~~~~~-~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 146 KPLDADDERKSKFVNVGWGRKETQFRGS-EGRQAARQKIEKEKALEQIE-QDDHKTSISWRGDGEYFAVSFVESETGTRK 223 (1265)
T ss_pred cccccccccccccceecccccceeeecc-hhhhcccccccccccccchh-hccCCceEEEccCCcEEEEEEEeccCCcee
Confidence 1111 112222333111 111111 11111111110000 00001 122345789999999998843 33 78
Q ss_pred EEEEECCCCceEEEEEecccCCcEEEEecCCCEEEEE---eCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcc
Q 001042 1070 LRFWENDDGGIKCVKNVTIHSSAILSINAGDHWLGIG---AADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVA 1146 (1178)
Q Consensus 1070 I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~Lasg---s~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~ 1146 (1178)
|++||.+ |.+.....-........++-|.|..+|+- ++|+.|.++...+.+.+.+. ........
T Consensus 224 irV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~------------l~~p~de~ 290 (1265)
T KOG1920|consen 224 IRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFV------------LPFPLDEK 290 (1265)
T ss_pred EEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccc------------cCCccccc
Confidence 9999987 54333333334445567778999999885 34667999987644322111 11122233
Q ss_pred cEEEEEEcCCCCEEEE---EeCCCcEEEEECCC
Q 001042 1147 VVRCIASDLERKRICS---GGRNGLLRLWEATI 1176 (1178)
Q Consensus 1147 ~V~~lafspdg~~Las---~s~Dg~V~IWdv~t 1176 (1178)
.|..++|+.++..||. ......|++|-+.+
T Consensus 291 ~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 291 EVEELAWNSNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred chheeeecCCCCceeeeecccccceEEEEEecC
Confidence 4899999999999998 55555699998764
No 330
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.14 E-value=0.0035 Score=69.05 Aligned_cols=209 Identities=10% Similarity=0.038 Sum_probs=132.2
Q ss_pred Eec-CCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecC----
Q 001042 889 INS-DRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGR---- 962 (1178)
Q Consensus 889 ~s~-d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~---- 962 (1178)
+.+ ++.++++-...+.|..|+..+++... +.... ...+++. +++.++.+..++. .++|..+++.......
T Consensus 7 ~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v~~~~~~-~~~d~~~g~~~~~~~~~~~~ 82 (246)
T PF08450_consen 7 WDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYVADSGGI-AVVDPDTGKVTVLADLPDGG 82 (246)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEEEETTCE-EEEETTTTEEEEEEEEETTC
T ss_pred EECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEEEEcCce-EEEecCCCcEEEEeeccCCC
Confidence 555 56666676678999999998876543 33222 6667777 6777888877655 5559998865443332
Q ss_pred -CCCCEEEEEEeCCCCEEEEEeCC--------CeEEEEECCCCceEEEEecCCccEEEEEEcC--CEE-EEEeCCCcEEE
Q 001042 963 -CSSAVLCMEYDDSTGILAAGGRD--------AVANIWDIRAGRQMHKFLGHTKWIRSIRMDR--DTV-ITGSDDWTARM 1030 (1178)
Q Consensus 963 -~~~~I~~l~~sp~~~~l~sgs~d--------g~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~--~~l-~sgs~dg~I~i 1030 (1178)
.....+.++++++|++.++.... |.+..++.. ++. ......-...+.++|++ +.| ++-+..+.|..
T Consensus 83 ~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~-~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~ 160 (246)
T PF08450_consen 83 VPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV-TVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWR 160 (246)
T ss_dssp SCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE-EEEEEEESSEEEEEEETTSSEEEEEETTTTEEEE
T ss_pred cccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeE-EEEecCcccccceEECCcchheeecccccceeEE
Confidence 34567899999999977766543 567888877 443 33333455677888864 445 46677888999
Q ss_pred EEcCCCee----eeE---eccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEEe---cCC
Q 001042 1031 WSISRGTC----DAV---LACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSIN---AGD 1100 (1178)
Q Consensus 1031 wd~~~~~~----~~~---~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is---~dg 1100 (1178)
+++..... ... +....+..-.++++.+|+..++....+.|.+++.+ |+......+. ...++++. ++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p--~~~~t~~~fgg~~~ 237 (246)
T PF08450_consen 161 FDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP--VPRPTNCAFGGPDG 237 (246)
T ss_dssp EEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S--SSSEEEEEEESTTS
T ss_pred EeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC--CCCEEEEEEECCCC
Confidence 99863221 122 22222347889999999988888889999999987 6443333343 22444432 454
Q ss_pred CEEEEE
Q 001042 1101 HWLGIG 1106 (1178)
Q Consensus 1101 ~~Lasg 1106 (1178)
+.|.+.
T Consensus 238 ~~L~vT 243 (246)
T PF08450_consen 238 KTLYVT 243 (246)
T ss_dssp SEEEEE
T ss_pred CEEEEE
Confidence 544443
No 331
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.12 E-value=0.0015 Score=71.82 Aligned_cols=189 Identities=18% Similarity=0.193 Sum_probs=127.0
Q ss_pred Eec-CCCEEEEEeCCC-cEEEEECCCCcEEEEecCCCCce--EEEEEe-CCCeEEEEeC-----CCeEEEEeCC-CCeEE
Q 001042 889 INS-DRGKVVSGSDDQ-SVLVWDKQTSQLLEELKGHDAQV--SCVRML-SGERVLTASH-----DGTVKMWDVR-TDTCV 957 (1178)
Q Consensus 889 ~s~-d~~~l~sgs~dg-~I~iwd~~t~~~~~~l~~h~~~V--~~l~~~-~~~~l~sgs~-----dg~V~iwd~~-~~~~~ 957 (1178)
.+| ++..++.+-.-| ...+||..+++....+....+.- -.-.|+ ++.+|++.-. .|.|-|||.. +-+.+
T Consensus 12 ~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri 91 (305)
T PF07433_consen 12 AHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRI 91 (305)
T ss_pred eCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEE
Confidence 456 445566665555 46789999999887775443332 134567 7888887643 5899999998 56777
Q ss_pred EEecCCCCCEEEEEEeCCCCEEEEEe------------------CCCeEEEEECCCCceEEEEe----cCCccEEEEEEc
Q 001042 958 ATVGRCSSAVLCMEYDDSTGILAAGG------------------RDAVANIWDIRAGRQMHKFL----GHTKWIRSIRMD 1015 (1178)
Q Consensus 958 ~~~~~~~~~I~~l~~sp~~~~l~sgs------------------~dg~I~lwD~~~~~~~~~~~----~~~~~v~~l~~~ 1015 (1178)
..+..+.-.-..+.+.|||+.|+++. .+..+...|..+|+.+.+.. .|...+..++++
T Consensus 92 ~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~ 171 (305)
T PF07433_consen 92 GEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVD 171 (305)
T ss_pred eEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEec
Confidence 88877776777889999998888773 12346667788888877643 367788888886
Q ss_pred CC-EEEEEeC-CCc-------EEEEEcCCCeeeeEec-------cCCCcEEEEEEecCCCEEEEEe-CCCcEEEEECCCC
Q 001042 1016 RD-TVITGSD-DWT-------ARMWSISRGTCDAVLA-------CHAGPVQCVEYSSSDRGIITGS-SDGLLRFWENDDG 1078 (1178)
Q Consensus 1016 ~~-~l~sgs~-dg~-------I~iwd~~~~~~~~~~~-------~h~~~I~~l~~spdg~~L~sgs-~Dg~I~iwd~~~~ 1078 (1178)
++ .++.+.. .|. +.+++ .++.+..+. .-.+.+-+|++++++..+++.+ ..|.+.+||..++
T Consensus 172 ~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg 249 (305)
T PF07433_consen 172 GDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATG 249 (305)
T ss_pred CCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCC
Confidence 55 3333321 111 23333 222222222 2346789999999998876555 7788999999999
Q ss_pred c
Q 001042 1079 G 1079 (1178)
Q Consensus 1079 ~ 1079 (1178)
.
T Consensus 250 ~ 250 (305)
T PF07433_consen 250 R 250 (305)
T ss_pred C
Confidence 4
No 332
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.05 E-value=2.3e-06 Score=100.96 Aligned_cols=215 Identities=15% Similarity=0.256 Sum_probs=147.1
Q ss_pred ceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEE--ecCCCEE
Q 001042 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDRGKV 896 (1178)
Q Consensus 819 ~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~--s~d~~~l 896 (1178)
..++++.|+..-+|++|+ -+.++|+.|+-.|.|+++++. .+.......+|..+|+-+ +.||..+
T Consensus 1093 ~w~~frd~~~~fTc~afs------------~~~~hL~vG~~~Geik~~nv~--sG~~e~s~ncH~SavT~vePs~dgs~~ 1158 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFS------------GGTNHLAVGSHAGEIKIFNVS--SGSMEESVNCHQSAVTLVEPSVDGSTQ 1158 (1516)
T ss_pred cchhhhccccceeeEEee------------cCCceEEeeeccceEEEEEcc--CccccccccccccccccccccCCccee
Confidence 456677888888888887 889999999999999999987 445557889999999987 5678877
Q ss_pred EEEeCCC--cEEEEECCC-CcEEEEecCCCCceEEEEEeCCC-eEEEEeCCCeEEEEeCCCCeEEEEe-cC---CCCCEE
Q 001042 897 VSGSDDQ--SVLVWDKQT-SQLLEELKGHDAQVSCVRMLSGE-RVLTASHDGTVKMWDVRTDTCVATV-GR---CSSAVL 968 (1178)
Q Consensus 897 ~sgs~dg--~I~iwd~~t-~~~~~~l~~h~~~V~~l~~~~~~-~l~sgs~dg~V~iwd~~~~~~~~~~-~~---~~~~I~ 968 (1178)
++.+... -..+|++.+ +...+++. .-.++.|++.. .-+.|+......+||+.++....++ .+ ....-.
T Consensus 1159 Ltsss~S~PlsaLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n 1234 (1516)
T KOG1832|consen 1159 LTSSSSSSPLSALWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNN 1234 (1516)
T ss_pred eeeccccCchHHHhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhcc
Confidence 7655433 467899864 44444444 34577787432 2334445567899999999876663 21 222336
Q ss_pred EEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEE-EEEcCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCC
Q 001042 969 CMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRS-IRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAG 1047 (1178)
Q Consensus 969 ~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~-l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~ 1047 (1178)
+..|+|+...++ .|| .+||.+..+.++.|...+..+.. ...+++.++..++ |||+++.+.++....-
T Consensus 1235 ~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~L-- 1302 (1516)
T KOG1832|consen 1235 LAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSL-- 1302 (1516)
T ss_pred ccccCCCcceEe---eCc--eeeeeccHHHHhhhhhheecccccccCCCceEEeech-----hhhhHHHHHHhcCccc--
Confidence 788999988775 455 48999988877776543322211 2224556665543 8999998877665432
Q ss_pred cEEEEEEecCCCEEEE
Q 001042 1048 PVQCVEYSSSDRGIIT 1063 (1178)
Q Consensus 1048 ~I~~l~~spdg~~L~s 1063 (1178)
.-..+.|+..|..+..
T Consensus 1303 dqc~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1303 DQCAVTFNSTGDVMYA 1318 (1516)
T ss_pred cceEEEeccCccchhh
Confidence 2356778877776543
No 333
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=0.00017 Score=79.30 Aligned_cols=252 Identities=12% Similarity=0.135 Sum_probs=145.4
Q ss_pred EEEEECCCCcEEEEecCCCCceEEEEEeC--CCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCC-CEEEE
Q 001042 905 VLVWDKQTSQLLEELKGHDAQVSCVRMLS--GERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDST-GILAA 981 (1178)
Q Consensus 905 I~iwd~~t~~~~~~l~~h~~~V~~l~~~~--~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~-~~l~s 981 (1178)
+++.+..+.+....+.+|...|.+++|++ ...+..++.+.+|++.|+++..++..+..+ ..+++++|+-|. +++.+
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 56666666666667788999999999994 446889999999999999999999888776 889999998855 56778
Q ss_pred EeCCCeEEEEECCCCceE-EEEec--CCccEEEEEE--------cCCEEEEEeCCCcEEEEEcCC--CeeeeEec-cCCC
Q 001042 982 GGRDAVANIWDIRAGRQM-HKFLG--HTKWIRSIRM--------DRDTVITGSDDWTARMWSISR--GTCDAVLA-CHAG 1047 (1178)
Q Consensus 982 gs~dg~I~lwD~~~~~~~-~~~~~--~~~~v~~l~~--------~~~~l~sgs~dg~I~iwd~~~--~~~~~~~~-~h~~ 1047 (1178)
|..+|.|.+||++..+-. ..+.+ ...+|..++. .+..++..+.+ ...|++.- +....+.. +..+
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG 331 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPG 331 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCc
Confidence 889999999999975432 22222 2334555443 23344444433 45565432 22222222 1245
Q ss_pred cEEEEEEecCCCEEEEEeCC-C------cEE-EEECCCCceEEEEEe--------cccCCcEEEEecCCCEEE-EEeCCC
Q 001042 1048 PVQCVEYSSSDRGIITGSSD-G------LLR-FWENDDGGIKCVKNV--------TIHSSAILSINAGDHWLG-IGAADN 1110 (1178)
Q Consensus 1048 ~I~~l~~spdg~~L~sgs~D-g------~I~-iwd~~~~~~~~~~~~--------~~h~~~i~~is~dg~~La-sgs~Dg 1110 (1178)
...++.+++-.+.++..-.. . .|- --|-.+|...+...- +-++....--.++.++++ +|++.+
T Consensus 332 ~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn 411 (463)
T KOG1645|consen 332 ICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTN 411 (463)
T ss_pred ceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcc
Confidence 56666666654544433211 0 000 011122222221111 111111111134445444 455668
Q ss_pred cEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcC-C-CCEEEEEeCCCcEEEEECCC
Q 001042 1111 SMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDL-E-RKRICSGGRNGLLRLWEATI 1176 (1178)
Q Consensus 1111 ~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafsp-d-g~~Las~s~Dg~V~IWdv~t 1176 (1178)
.+.+||..+.. ...++.- +.+|.+++... + +.+|+.- .|..++|+..+.
T Consensus 412 ~lil~D~~s~e---------------vvQ~l~~-~epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~es 462 (463)
T KOG1645|consen 412 ELILQDPHSFE---------------VVQTLAL-SEPVLDICPNDTNGSSYLALL-TDDRVHIYKNES 462 (463)
T ss_pred eeEEeccchhh---------------eeeeccc-CcceeecceeecCCcchhhhe-ecceEEEEecCC
Confidence 89999997542 2222221 25677766543 3 3466655 466889888764
No 334
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.04 E-value=1.3e-05 Score=60.15 Aligned_cols=39 Identities=28% Similarity=0.687 Sum_probs=36.9
Q ss_pred CeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEE
Q 001042 1036 GTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWE 1074 (1178)
Q Consensus 1036 ~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd 1074 (1178)
++++.++.+|.+.|++++|+|++++|++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 335
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.03 E-value=0.0037 Score=78.14 Aligned_cols=275 Identities=9% Similarity=0.048 Sum_probs=153.3
Q ss_pred cccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEEeCCCcE
Q 001042 826 HAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSV 905 (1178)
Q Consensus 826 H~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sgs~dg~I 905 (1178)
..+.|.++.|. .++.-++.+..+|.|.+-|.+....+...... ..-...+|+||++.++..+.++++
T Consensus 67 gd~~i~s~~fl------------~d~~~i~v~~~~G~iilvd~et~~~eivg~vd-~GI~aaswS~Dee~l~liT~~~tl 133 (1265)
T KOG1920|consen 67 GDDEIVSVQFL------------ADTNSICVITALGDIILVDPETLELEIVGNVD-NGISAASWSPDEELLALITGRQTL 133 (1265)
T ss_pred CCcceEEEEEe------------cccceEEEEecCCcEEEEcccccceeeeeecc-CceEEEeecCCCcEEEEEeCCcEE
Confidence 34689999998 78888999999999999987633333322221 222333689999999999988887
Q ss_pred EEEECCCCcEEEEecCC-----CCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEE
Q 001042 906 LVWDKQTSQLLEELKGH-----DAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILA 980 (1178)
Q Consensus 906 ~iwd~~t~~~~~~l~~h-----~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~ 980 (1178)
.+-+ .+..++..-.-+ .+....+-|.....-+-|+. |.....+..............+.=++++|-.||.+++
T Consensus 134 l~mT-~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~-gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fA 211 (1265)
T KOG1920|consen 134 LFMT-KDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSE-GRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFA 211 (1265)
T ss_pred EEEe-ccccchhccccccccccccccceecccccceeeecch-hhhcccccccccccccchhhccCCceEEEccCCcEEE
Confidence 6643 223333221111 11122222321111112211 1111111100000000001223335799999999998
Q ss_pred EEe-----CCCeEEEEECCCCceEEEEecCCccEEEEEEc--CCEEEEEe---CCCcEEEEEcCCCeeee----EeccCC
Q 001042 981 AGG-----RDAVANIWDIRAGRQMHKFLGHTKWIRSIRMD--RDTVITGS---DDWTARMWSISRGTCDA----VLACHA 1046 (1178)
Q Consensus 981 sgs-----~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sgs---~dg~I~iwd~~~~~~~~----~~~~h~ 1046 (1178)
+.. ....|++||-. |..-..-....+.-.+++|. |..+++-. .|+.|.++. ++|-... .+....
T Consensus 212 Vs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE-rNGL~hg~f~l~~p~de 289 (1265)
T KOG1920|consen 212 VSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE-RNGLRHGEFVLPFPLDE 289 (1265)
T ss_pred EEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEe-cCCccccccccCCcccc
Confidence 843 33789999976 43322222233334567774 45666543 566788888 4443322 222334
Q ss_pred CcEEEEEEecCCCEEEE---EeCCCcEEEEECCCCceEEEEEecccCCcEEEEecCC-CEEEEEeCCCcEEEEEc
Q 001042 1047 GPVQCVEYSSSDRGIIT---GSSDGLLRFWENDDGGIKCVKNVTIHSSAILSINAGD-HWLGIGAADNSMSLFHR 1117 (1178)
Q Consensus 1047 ~~I~~l~~spdg~~L~s---gs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg-~~Lasgs~Dg~I~iwd~ 1117 (1178)
..+..++|+.++..|++ ......|++|-+.+-.+-....+.......+.++|.. ..+.+-..+|...++|.
T Consensus 290 ~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 290 KEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKALLMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred cchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEeccccccccccCCCceeEEEEecCCcEEEEEE
Confidence 45899999999999887 4455569999998876655555555555555555422 23333335565555554
No 336
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.03 E-value=0.015 Score=64.97 Aligned_cols=257 Identities=14% Similarity=0.122 Sum_probs=154.5
Q ss_pred CcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEe----------CCCeEEEEeCCCCeEEEEecCCCC-C----
Q 001042 903 QSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTAS----------HDGTVKMWDVRTDTCVATVGRCSS-A---- 966 (1178)
Q Consensus 903 g~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs----------~dg~V~iwd~~~~~~~~~~~~~~~-~---- 966 (1178)
+.+.++|.++++.+..+... ..-.+..+ +++.+++++ ..-.|.+||..+-.....+.-... .
T Consensus 17 ~rv~viD~d~~k~lGmi~~g--~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTG--FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE--SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeecc--cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 47899999999888777632 22223445 666666543 234699999999988776543332 1
Q ss_pred --EEEEEEeCCCCEEEEEe--CCCeEEEEECCCCceEEEEecCCccEEEEEEcCCEEEEEeCCCcEEEEEcC-CCeeeeE
Q 001042 967 --VLCMEYDDSTGILAAGG--RDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSIS-RGTCDAV 1041 (1178)
Q Consensus 967 --I~~l~~sp~~~~l~sgs--~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~~l~sgs~dg~I~iwd~~-~~~~~~~ 1041 (1178)
....+++.|++++++.. -...|.+.|+..++.+.++... +...-.-..++.+.+-+.||++.-..+. .|+...+
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P-GC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~ 173 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP-GCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQK 173 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT-SEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEE
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC-CEEEEEecCCCceEEEecCCceEEEEECCCCCEeEe
Confidence 23467788898887754 3467899999998888776432 2222233355688899999999999887 4554322
Q ss_pred e----ccCCCc-EEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecc------------cCCcEEEEecCCCEEE
Q 001042 1042 L----ACHAGP-VQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTI------------HSSAILSINAGDHWLG 1104 (1178)
Q Consensus 1042 ~----~~h~~~-I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~------------h~~~i~~is~dg~~La 1104 (1178)
. .....+ +..-+++..+..++--+.+|.|+--|+..........+.. ..-.+.++++..+.|.
T Consensus 174 ~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rly 253 (342)
T PF06433_consen 174 STKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLY 253 (342)
T ss_dssp EEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEE
T ss_pred eccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEE
Confidence 1 111222 2344556566666667789999999988775554444431 1123456665554444
Q ss_pred EEe---C-----CC--cEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCC-EEEEE-eCCCcEEEE
Q 001042 1105 IGA---A-----DN--SMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERK-RICSG-GRNGLLRLW 1172 (1178)
Q Consensus 1105 sgs---~-----Dg--~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~-~Las~-s~Dg~V~IW 1172 (1178)
+-- . |+ .|.++|+. ++.++..+.+ ...+.+++.+.|.+ +|++. ..+|.+.+|
T Consensus 254 vLMh~g~~gsHKdpgteVWv~D~~---------t~krv~Ri~l-------~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~ 317 (342)
T PF06433_consen 254 VLMHQGGEGSHKDPGTEVWVYDLK---------THKRVARIPL-------EHPIDSIAVSQDDKPLLYALSAGDGTLDVY 317 (342)
T ss_dssp EEEEE--TT-TTS-EEEEEEEETT---------TTEEEEEEEE-------EEEESEEEEESSSS-EEEEEETTTTEEEEE
T ss_pred EEecCCCCCCccCCceEEEEEECC---------CCeEEEEEeC-------CCccceEEEccCCCcEEEEEcCCCCeEEEE
Confidence 421 1 22 25555665 3333322222 12477899998877 56554 458999999
Q ss_pred ECCCCC
Q 001042 1173 EATINI 1178 (1178)
Q Consensus 1173 dv~tg~ 1178 (1178)
|..||+
T Consensus 318 D~~tGk 323 (342)
T PF06433_consen 318 DAATGK 323 (342)
T ss_dssp ETTT--
T ss_pred eCcCCc
Confidence 999985
No 337
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=0.00058 Score=82.01 Aligned_cols=196 Identities=9% Similarity=0.092 Sum_probs=130.6
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccc-eEEEe--cCCCEEEEEeCCC-----cEEEEECCCC------c
Q 001042 849 EDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRT-VRAIN--SDRGKVVSGSDDQ-----SVLVWDKQTS------Q 914 (1178)
Q Consensus 849 ~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~-V~~~s--~d~~~l~sgs~dg-----~I~iwd~~t~------~ 914 (1178)
+.+..+|.|+.+|.|.+.+ .+......+..+... |..+. .+.+.|++.+.|+ .++||+++.- +
T Consensus 33 s~~~~vvigt~~G~V~~Ln---~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~ 109 (933)
T KOG2114|consen 33 SSTGSVVIGTADGRVVILN---SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQ 109 (933)
T ss_pred CCCceEEEeeccccEEEec---ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcc
Confidence 7899999999999999987 345555777777776 43332 3335788877665 4899998642 2
Q ss_pred EEE--EecC-----CCCceEEEEEe-CCCeEEEEeCCCeEEEEeCC----CCeEEEEecCCCCCEEEEEEeCCCCEEEEE
Q 001042 915 LLE--ELKG-----HDAQVSCVRML-SGERVLTASHDGTVKMWDVR----TDTCVATVGRCSSAVLCMEYDDSTGILAAG 982 (1178)
Q Consensus 915 ~~~--~l~~-----h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~----~~~~~~~~~~~~~~I~~l~~sp~~~~l~sg 982 (1178)
++. .+.. ...++.+++.+ +-..+++|-.||.|..+.-+ .|...........+|+.+++..++..++.+
T Consensus 110 c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv 189 (933)
T KOG2114|consen 110 CLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFV 189 (933)
T ss_pred eeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEE
Confidence 331 2222 35568888888 67788899999999988532 122222233457899999999988873333
Q ss_pred eCCCeEEEEECCCCce-EEEEecCCccEEEEEEcCC-E-EEEEeCCCcEEEEEcCCCeeeeEec-cCCCc
Q 001042 983 GRDAVANIWDIRAGRQ-MHKFLGHTKWIRSIRMDRD-T-VITGSDDWTARMWSISRGTCDAVLA-CHAGP 1048 (1178)
Q Consensus 983 s~dg~I~lwD~~~~~~-~~~~~~~~~~v~~l~~~~~-~-l~sgs~dg~I~iwd~~~~~~~~~~~-~h~~~ 1048 (1178)
.....|.+|.+....+ ...+..|...+.|.++++. . +++++. ..+.+||......-..+. +|...
T Consensus 190 ~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~~g~kk~ 258 (933)
T KOG2114|consen 190 ATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFEVGEKKE 258 (933)
T ss_pred EecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeecCCCeEE
Confidence 3345789999884443 4446677788999998543 3 555544 469999977555555555 44433
No 338
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=0.00055 Score=81.66 Aligned_cols=177 Identities=17% Similarity=0.243 Sum_probs=122.5
Q ss_pred ceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEec
Q 001042 925 QVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLG 1004 (1178)
Q Consensus 925 ~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~ 1004 (1178)
.++|+++ .+..++-|+.+|.|++.+.... . .+...|... +.+|.++++++.||+|.+..+-+.+...++ .
T Consensus 41 ~is~~av-~~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~-d 110 (846)
T KOG2066|consen 41 AISCCAV-HDKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY-D 110 (846)
T ss_pred HHHHHHh-hcceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE-e
Confidence 3444444 4678999999999999997543 3 232233332 668999999999999999998888777665 4
Q ss_pred CCccEEEEEEcCC-------EEEEEeCCCcEEEEEcCC-C-eeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 001042 1005 HTKWIRSIRMDRD-------TVITGSDDWTARMWSISR-G-TCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWEN 1075 (1178)
Q Consensus 1005 ~~~~v~~l~~~~~-------~l~sgs~dg~I~iwd~~~-~-~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~ 1075 (1178)
-..++.+++++|+ .+++|+.-| +.++.-+- | +....+....++|.++.|. |+++|=++.+| |++||+
T Consensus 111 f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~ 186 (846)
T KOG2066|consen 111 FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDT 186 (846)
T ss_pred cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEec
Confidence 5568899999776 789999888 77765321 1 1112355567899999997 88888887777 999999
Q ss_pred CCCceEEEEEecccCCcEE------EEe-cCCCEEEEEeCCCcEEEEEcC
Q 001042 1076 DDGGIKCVKNVTIHSSAIL------SIN-AGDHWLGIGAADNSMSLFHRP 1118 (1178)
Q Consensus 1076 ~~~~~~~~~~~~~h~~~i~------~is-~dg~~Lasgs~Dg~I~iwd~~ 1118 (1178)
.++ ..+..++.....+. .+. .+...|+.| +..+|+|..+.
T Consensus 187 ~~~--~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 187 PTR--QRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIG-WGDSVKICSIK 233 (846)
T ss_pred ccc--ceeeccCCCCCCCCcccCCCceEecCCCeEEEe-cCCeEEEEEEe
Confidence 887 44444433222221 111 244556655 55689999987
No 339
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.97 E-value=0.00061 Score=80.36 Aligned_cols=150 Identities=10% Similarity=0.161 Sum_probs=101.6
Q ss_pred ceEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEec-CCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEE-----
Q 001042 885 TVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELK-GHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCV----- 957 (1178)
Q Consensus 885 ~V~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~-~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~----- 957 (1178)
..+|++..+++++.|+..|.+.+|+-..++....-. +..+.+.....+ ++.+++.|+..|.|.++-+..+..-
T Consensus 37 ~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~ 116 (726)
T KOG3621|consen 37 KLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYV 116 (726)
T ss_pred EEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceee
Confidence 345788999999999999999999987776543222 233444444555 5667778888899999887664321
Q ss_pred EEe-cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC----ceEEEEecCCccEEEEEEcCCEEEEEeCCCcEEEEE
Q 001042 958 ATV-GRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAG----RQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWS 1032 (1178)
Q Consensus 958 ~~~-~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~----~~~~~~~~~~~~v~~l~~~~~~l~sgs~dg~I~iwd 1032 (1178)
... +.|...|++++|++++..+++|...|+|..-.+.+. -..+.+....+.|-.+.....++++++.-..+ +++
T Consensus 117 t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl~r~~-Lc~ 195 (726)
T KOG3621|consen 117 TPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQSYLLVSTLTRCI-LCQ 195 (726)
T ss_pred ccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccceehHhhhhhhh-eee
Confidence 111 236788999999999999999999999999888762 12233444556677777655555554443332 344
Q ss_pred cCC
Q 001042 1033 ISR 1035 (1178)
Q Consensus 1033 ~~~ 1035 (1178)
++.
T Consensus 196 tE~ 198 (726)
T KOG3621|consen 196 TEA 198 (726)
T ss_pred cch
Confidence 443
No 340
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.96 E-value=0.0046 Score=68.10 Aligned_cols=213 Identities=14% Similarity=0.148 Sum_probs=139.1
Q ss_pred CCCEEEEEeCCCc-EEEEcCCCCCceeeEeecccccceE----EEecCCCEEEEEe-----CCCcEEEEECC-CCcEEEE
Q 001042 850 DAGFFISGSTDCL-VKIWDPSLRGSELRATLKGHTRTVR----AINSDRGKVVSGS-----DDQSVLVWDKQ-TSQLLEE 918 (1178)
Q Consensus 850 d~~~Lasgs~Dg~-I~iWd~~~~~~~~~~~l~~h~~~V~----~~s~d~~~l~sgs-----~dg~I~iwd~~-t~~~~~~ 918 (1178)
++..++.+-.-|+ ..+||.. +......+....+.-. .|++||++|++.- ..|.|-|||.. +-+.+.+
T Consensus 16 ~~~avafaRRPG~~~~v~D~~--~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E 93 (305)
T PF07433_consen 16 RPEAVAFARRPGTFALVFDCR--TGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGE 93 (305)
T ss_pred CCeEEEEEeCCCcEEEEEEcC--CCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeE
Confidence 5566666666664 5677765 3333344443333322 6899999999863 45899999999 6678888
Q ss_pred ecCCCCceEEEEEe-CCCeEEEEe------------------CCCeEEEEeCCCCeEEEEec----CCCCCEEEEEEeCC
Q 001042 919 LKGHDAQVSCVRML-SGERVLTAS------------------HDGTVKMWDVRTDTCVATVG----RCSSAVLCMEYDDS 975 (1178)
Q Consensus 919 l~~h~~~V~~l~~~-~~~~l~sgs------------------~dg~V~iwd~~~~~~~~~~~----~~~~~I~~l~~sp~ 975 (1178)
+..|.-.-..+.+. ++..|+++. .+-.+...|..+|+.+.... .|...|..++++++
T Consensus 94 ~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~ 173 (305)
T PF07433_consen 94 FPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGD 173 (305)
T ss_pred ecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCC
Confidence 88887777777777 555666652 22346677888898877633 36678999999999
Q ss_pred CCEEEEEeCCCe-------EEEEECCCCceEEEEe-------cCCccEEEEEEcCC--EEE-EEeCCCcEEEEEcCCCee
Q 001042 976 TGILAAGGRDAV-------ANIWDIRAGRQMHKFL-------GHTKWIRSIRMDRD--TVI-TGSDDWTARMWSISRGTC 1038 (1178)
Q Consensus 976 ~~~l~sgs~dg~-------I~lwD~~~~~~~~~~~-------~~~~~v~~l~~~~~--~l~-sgs~dg~I~iwd~~~~~~ 1038 (1178)
|..++..-..|. +.+++ .++.+..+. .-.+.+-+|+++.+ .++ |+-..+.+.+||..+++.
T Consensus 174 G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~ 251 (305)
T PF07433_consen 174 GTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRL 251 (305)
T ss_pred CcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCE
Confidence 987666544332 33333 233232222 23467889999544 554 444778899999999988
Q ss_pred eeEeccCCCcEEEEEEecCCCEEEEEeCCCcE
Q 001042 1039 DAVLACHAGPVQCVEYSSSDRGIITGSSDGLL 1070 (1178)
Q Consensus 1039 ~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I 1070 (1178)
+....- ..+..++-.+++ ++++.+ .|.+
T Consensus 252 ~~~~~l--~D~cGva~~~~~-f~~ssG-~G~~ 279 (305)
T PF07433_consen 252 LGSVPL--PDACGVAPTDDG-FLVSSG-QGQL 279 (305)
T ss_pred eecccc--CceeeeeecCCc-eEEeCC-CccE
Confidence 776643 346677777666 555544 4443
No 341
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.96 E-value=0.0098 Score=72.68 Aligned_cols=148 Identities=16% Similarity=0.163 Sum_probs=98.3
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEecCC--C--CceEEEEEeCCCeEEEEeC------CCeEEEEeCCCCeEEEEec
Q 001042 892 DRGKVVSGSDDQSVLVWDKQTSQLLEELKGH--D--AQVSCVRMLSGERVLTASH------DGTVKMWDVRTDTCVATVG 961 (1178)
Q Consensus 892 d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h--~--~~V~~l~~~~~~~l~sgs~------dg~V~iwd~~~~~~~~~~~ 961 (1178)
.+..++.++.|+.+.-.|.++|+.+...... . ..+++--...++.++++.. +|.|..+|.++|+.+..+.
T Consensus 119 ~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 119 YDGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 3567888889999999999999998876531 1 1122111112445665543 6899999999999877653
Q ss_pred CCCC-------------------------------CE-EEEEEeCCCCEEEEEeCC-----C-----------eEEEEEC
Q 001042 962 RCSS-------------------------------AV-LCMEYDDSTGILAAGGRD-----A-----------VANIWDI 993 (1178)
Q Consensus 962 ~~~~-------------------------------~I-~~l~~sp~~~~l~sgs~d-----g-----------~I~lwD~ 993 (1178)
.... .+ ..++++++..+++.+..+ + .|.-.|+
T Consensus 199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~ 278 (527)
T TIGR03075 199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDP 278 (527)
T ss_pred CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcc
Confidence 2111 11 135777777777776632 2 5777899
Q ss_pred CCCceEEEEecCCccE-----------EEEEEcCC---EEEEEeCCCcEEEEEcCCCeee
Q 001042 994 RAGRQMHKFLGHTKWI-----------RSIRMDRD---TVITGSDDWTARMWSISRGTCD 1039 (1178)
Q Consensus 994 ~~~~~~~~~~~~~~~v-----------~~l~~~~~---~l~sgs~dg~I~iwd~~~~~~~ 1039 (1178)
+||+....++.....+ ..+..++. .++.+..+|.+++.|-.+|+.+
T Consensus 279 ~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 279 DTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred ccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 9999887776432221 22223554 7889999999999999999875
No 342
>PF08616 SPA: Stabilization of polarity axis
Probab=97.94 E-value=3.8e-05 Score=72.45 Aligned_cols=104 Identities=27% Similarity=0.403 Sum_probs=75.2
Q ss_pred chHHHhccCChhhHHHHHHHHhccccEEEEeCCcch--HHHHHHHHHHccccc---CC-CceeecccchhhhhhccCCcc
Q 001042 206 SFQPLVQLLDVDNLITLFTAVLLERRILLRSNKYSL--LTLVSEAICHLIYPF---RW-QHVYIPLLFFSGVDYIDAPTP 279 (1178)
Q Consensus 206 ~~~~l~~~l~~~~~l~l~~~~L~E~~il~~s~~~~~--ls~~~~al~~ll~Pf---~w-~~~~IP~lP~~l~~~l~aP~P 279 (1178)
++..+++.++++ ++.|+.++|+++||++.|.+++. ++.++.|+.+|+.|. +. ..-+-|..-.+-++-+.+..-
T Consensus 3 ~l~~~~~~f~~~-i~~L~~alL~~krivv~s~~~~~~~~s~~Vlal~~Li~p~~~~~~~~~~~~PY~~i~~~~~l~~~~~ 81 (113)
T PF08616_consen 3 SLLHLFQQFGPE-IILLWEALLLGKRIVVYSPSPSAGEVSEFVLALCSLISPGQDLRYFSNRYFPYFTISDLDELKSCPG 81 (113)
T ss_pred cHHHHHHhhhhH-HHHHHHHHHhCCCEEEECCCCCHHHHHHHHHHHHHHHCcccchhcccccccceeechhhhhhccCCC
Confidence 455666666654 66689999999999999999999 999999999999992 22 222345555555766777667
Q ss_pred eEEeecCCCCccccCCCcEEEEEcCCCeeeCC
Q 001042 280 YMMGLHSGVDTSNLAMDGVVVVDLEYNRICTT 311 (1178)
Q Consensus 280 ~iiGv~~~~~~~~~~~~~~~~vdlD~~~i~~~ 311 (1178)
||+|+.-.......+.= =+++|||+++|...
T Consensus 82 ~I~GvtNP~F~~~~~~w-D~~~~l~~~~i~~s 112 (113)
T PF08616_consen 82 YIAGVTNPIFEKRLDWW-DHLCDLDTGEITVS 112 (113)
T ss_pred EEEEeCCHHHHhccccC-CEEEEcCCCeEEec
Confidence 99999764422222211 17899999999754
No 343
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.94 E-value=4.5e-06 Score=98.57 Aligned_cols=194 Identities=15% Similarity=0.246 Sum_probs=136.2
Q ss_pred cCCcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceec
Q 001042 766 GIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWD 843 (1178)
Q Consensus 766 gh~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~ 843 (1178)
.|.....|++||-+.++|+.|+-. |+++++.+|. ......+|..+|+-+.-+
T Consensus 1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~-------------------~e~s~ncH~SavT~vePs------- 1152 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS-------------------MEESVNCHQSAVTLVEPS------- 1152 (1516)
T ss_pred ccccceeeEEeecCCceEEeeeccceEEEEEccCcc-------------------cccccccccccccccccc-------
Confidence 466788999999999999999877 9999999998 455678999999999866
Q ss_pred cccccCCCCEEEEEeCCC--cEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEe-c
Q 001042 844 LVGDREDAGFFISGSTDC--LVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEEL-K 920 (1178)
Q Consensus 844 ~~~~s~d~~~Lasgs~Dg--~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l-~ 920 (1178)
.||..+++.+.-. ...+|+... .....+++.+. ....|+.....-+.|+......+||++|+..+.++ .
T Consensus 1153 -----~dgs~~Ltsss~S~PlsaLW~~~s-~~~~~Hsf~ed--~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt 1224 (1516)
T KOG1832|consen 1153 -----VDGSTQLTSSSSSSPLSALWDASS-TGGPRHSFDED--KAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLT 1224 (1516)
T ss_pred -----CCcceeeeeccccCchHHHhcccc-ccCcccccccc--ceeehhhhHHHHHhcccccceEEEecccCcHHHHhcC
Confidence 7888777665433 578999873 33344444432 22334444444455555577899999999776653 2
Q ss_pred ---CCCCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Q 001042 921 ---GHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGR 997 (1178)
Q Consensus 921 ---~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~ 997 (1178)
+....-++..|++.+.++. .|| .+||++..+.++.+..... -..-.|+|.|..++.-+ .|||+++.+
T Consensus 1225 ~~~~~~y~~n~a~FsP~D~LIl--ndG--vLWDvR~~~aIh~FD~ft~-~~~G~FHP~g~eVIINS-----EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1225 DTVTSSYSNNLAHFSPCDTLIL--NDG--VLWDVRIPEAIHRFDQFTD-YGGGGFHPSGNEVIINS-----EIWDMRTFK 1294 (1516)
T ss_pred cchhhhhhccccccCCCcceEe--eCc--eeeeeccHHHHhhhhhhee-cccccccCCCceEEeec-----hhhhhHHHH
Confidence 2223336777886555543 355 6899998877777655442 23346899999988876 499999988
Q ss_pred eEEEEe
Q 001042 998 QMHKFL 1003 (1178)
Q Consensus 998 ~~~~~~ 1003 (1178)
.++...
T Consensus 1295 lLh~VP 1300 (1516)
T KOG1832|consen 1295 LLHSVP 1300 (1516)
T ss_pred HHhcCc
Confidence 776653
No 344
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.77 E-value=0.00051 Score=81.54 Aligned_cols=277 Identities=10% Similarity=0.130 Sum_probs=151.0
Q ss_pred cceEEEecCCCEEEEEe----CCCcEEEEECCCCcEEEEecCCCCceEEEEEeCCCe-EEEEeCCCeEEEEeCCCCeEEE
Q 001042 884 RTVRAINSDRGKVVSGS----DDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGER-VLTASHDGTVKMWDVRTDTCVA 958 (1178)
Q Consensus 884 ~~V~~~s~d~~~l~sgs----~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~~~~~-l~sgs~dg~V~iwd~~~~~~~~ 958 (1178)
..+.+|+|....+++++ ..|.|.||- ++|++-.... ..-.+++++|++... ++.|-.-|.+.+|...+.+...
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ht 95 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHT 95 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeee
Confidence 34556778888887765 357888874 5666533222 122356799996554 5667778999999988887777
Q ss_pred EecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEE--EecC--CccEEEEEE----cCC------EEEEEeC
Q 001042 959 TVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHK--FLGH--TKWIRSIRM----DRD------TVITGSD 1024 (1178)
Q Consensus 959 ~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~--~~~~--~~~v~~l~~----~~~------~l~sgs~ 1024 (1178)
....|..+|..+.||++|..++++..-|.+.+|.......+.. +..| ...++-++| ++. ..++.++
T Consensus 96 v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgD 175 (1416)
T KOG3617|consen 96 VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGD 175 (1416)
T ss_pred eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCc
Confidence 7778999999999999999999999999999998763222221 1112 122332222 211 3344444
Q ss_pred CCcEE-EEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEEecCCCEE
Q 001042 1025 DWTAR-MWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSINAGDHWL 1103 (1178)
Q Consensus 1025 dg~I~-iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~L 1103 (1178)
+..+- .++.+....-.... |.+ .|+|..+..++.+|+|+..|-... ...+..... .--+-+.+-..-+
T Consensus 176 e~alD~~fnwk~~~a~rs~~-ksg-------v~~g~~F~~~~~~GtVyyvdq~g~-~~~V~k~dS--~vQmLf~~~~eai 244 (1416)
T KOG3617|consen 176 ESALDEPFNWKESLAERSDE-KSG-------VPKGTEFLFAGKSGTVYYVDQNGR-QRTVHKLDS--EVQMLFMGYCEAI 244 (1416)
T ss_pred hhhhcccccCccchhhcccc-ccC-------CCCCcEEEEEcCCceEEEEcCCCc-EEEEEEccc--hHHHHHhcccceE
Confidence 43332 33322111111111 111 467888888889999887774432 222222211 0000001111222
Q ss_pred EEEeCCCcEEEEEcCC-Ccc------ccccCCCCCccceeE---eecc-------CCCcccEEEEEEcCCCCEEEEEeCC
Q 001042 1104 GIGAADNSMSLFHRPQ-ERL------GGFSGTGSKMSGWQL---YRTP-------QKTVAVVRCIASDLERKRICSGGRN 1166 (1178)
Q Consensus 1104 asgs~Dg~I~iwd~~~-~~~------~~~~~~g~~~~~~~~---~~~~-------~~h~~~V~~lafspdg~~Las~s~D 1166 (1178)
++...+-++.++-+.. +.. ......|.+..+..+ ...+ ......++|++++..+..|+.|...
T Consensus 245 ~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~ 324 (1416)
T KOG3617|consen 245 SIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGEKEIRLWAGTKE 324 (1416)
T ss_pred EEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEeccceEEEecccC
Confidence 2222222222222111 000 000001111000000 0000 1223569999999999999999999
Q ss_pred CcEEEEE
Q 001042 1167 GLLRLWE 1173 (1178)
Q Consensus 1167 g~V~IWd 1173 (1178)
|.+.+|.
T Consensus 325 gnv~~w~ 331 (1416)
T KOG3617|consen 325 GNVTIWL 331 (1416)
T ss_pred CcEEEee
Confidence 9999995
No 345
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.71 E-value=0.016 Score=68.52 Aligned_cols=167 Identities=13% Similarity=0.134 Sum_probs=93.4
Q ss_pred cEEEEECCCCcEEEEecCCCCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEe-------cCCCCCEEEEEEeCCC
Q 001042 904 SVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATV-------GRCSSAVLCMEYDDST 976 (1178)
Q Consensus 904 ~I~iwd~~t~~~~~~l~~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~-------~~~~~~I~~l~~sp~~ 976 (1178)
.|.||+.. |+.+..+.-..+.+.++.|.++..|++...||+++++|+.... ...+ ......+....+..+|
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCCC
Confidence 48888754 6666665544489999999988889999999999999986333 1111 1111222222333345
Q ss_pred CEEEEEeCCCeEEEEECCCCc-eEEEEecCCc------------cEEEEEEcCCEEEEEeCCCcEEEEEcCCCeeeeEec
Q 001042 977 GILAAGGRDAVANIWDIRAGR-QMHKFLGHTK------------WIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLA 1043 (1178)
Q Consensus 977 ~~l~sgs~dg~I~lwD~~~~~-~~~~~~~~~~------------~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 1043 (1178)
++.-+.++.+.+.+--... ..+.+..... .+..+..+....+....++.+.+.+-...+. +.
T Consensus 140 --ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~ 214 (410)
T PF04841_consen 140 --IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID 214 (410)
T ss_pred --EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc
Confidence 3333445555544322211 1111110000 0111111223344444445555444222111 21
Q ss_pred cCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 001042 1044 CHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDG 1078 (1178)
Q Consensus 1044 ~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~ 1078 (1178)
..+++..++.||+|+++|.-..+|.+.+.+.+-.
T Consensus 215 -~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~ 248 (410)
T PF04841_consen 215 -SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS 248 (410)
T ss_pred -CCCCeEEEEECCCCCEEEEEECCCCEEEEECccc
Confidence 2468999999999999999999999988876554
No 346
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.68 E-value=0.0013 Score=78.14 Aligned_cols=299 Identities=11% Similarity=0.070 Sum_probs=160.1
Q ss_pred ccCCCCEEEEEe----CCCcEEEEcCCCCCceeeE--eecccccceEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 001042 847 DREDAGFFISGS----TDCLVKIWDPSLRGSELRA--TLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELK 920 (1178)
Q Consensus 847 ~s~d~~~Lasgs----~Dg~I~iWd~~~~~~~~~~--~l~~h~~~V~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~ 920 (1178)
|.|...++|+++ ..|+|.|+-- .++... +..-|... .||+|..-.|+.|-.-|.+.+|...+.+.-....
T Consensus 23 WHPsePlfAVA~fS~er~GSVtIfad---tGEPqr~Vt~P~hatS-LCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~ 98 (1416)
T KOG3617|consen 23 WHPSEPLFAVASFSPERGGSVTIFAD---TGEPQRDVTYPVHATS-LCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVE 98 (1416)
T ss_pred cCCCCceeEEEEecCCCCceEEEEec---CCCCCcccccceehhh-hccChHHHHHhhccccceeEEEecCCceeeeecc
Confidence 335666666554 3578888852 222221 22223222 4788988899999999999999998887777777
Q ss_pred CCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEe--cCC--CCCE--EEEEEeCCCC------EEEEEeCCCe
Q 001042 921 GHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATV--GRC--SSAV--LCMEYDDSTG------ILAAGGRDAV 987 (1178)
Q Consensus 921 ~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~--~~~--~~~I--~~l~~sp~~~------~l~sgs~dg~ 987 (1178)
.|..+|..+.|+ +|+.++++..-|.|.+|.......++.. -.| ...+ .|...++++. ..++.+.+..
T Consensus 99 th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~a 178 (1416)
T KOG3617|consen 99 THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESA 178 (1416)
T ss_pred CCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhh
Confidence 899999999999 8999999999999999987633222221 111 2233 3444455532 2333333333
Q ss_pred EE-EEECCCCceEEEEecCCccEEEEEEcCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeC
Q 001042 988 AN-IWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSS 1066 (1178)
Q Consensus 988 I~-lwD~~~~~~~~~~~~~~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~ 1066 (1178)
+- .++.+.....+.. -.+-..++..++.++.+|+|+-.| .+|++....+..+. ..+-|.+...-+++-..
T Consensus 179 lD~~fnwk~~~a~rs~------~ksgv~~g~~F~~~~~~GtVyyvd-q~g~~~~V~k~dS~--vQmLf~~~~eai~~i~e 249 (1416)
T KOG3617|consen 179 LDEPFNWKESLAERSD------EKSGVPKGTEFLFAGKSGTVYYVD-QNGRQRTVHKLDSE--VQMLFMGYCEAISIIIE 249 (1416)
T ss_pred hcccccCccchhhccc------cccCCCCCcEEEEEcCCceEEEEc-CCCcEEEEEEccch--HHHHHhcccceEEEEee
Confidence 32 3332211111110 001112445777888899988887 34555444332111 11112221111111111
Q ss_pred CCcEEEEECC-C----------------------------Cce---EEEEEecccCCcEEEEecCCCEEEEEeCCCcEEE
Q 001042 1067 DGLLRFWEND-D----------------------------GGI---KCVKNVTIHSSAILSINAGDHWLGIGAADNSMSL 1114 (1178)
Q Consensus 1067 Dg~I~iwd~~-~----------------------------~~~---~~~~~~~~h~~~i~~is~dg~~Lasgs~Dg~I~i 1114 (1178)
+-++.++-+. + |-+ .......+..-.+.+.+..+..++.|...|.+.+
T Consensus 250 ~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~ 329 (1416)
T KOG3617|consen 250 FLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTI 329 (1416)
T ss_pred eceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEeccceEEEecccCCcEEE
Confidence 1111111110 0 100 0000111222233444677888999999999999
Q ss_pred EEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEE
Q 001042 1115 FHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSG 1163 (1178)
Q Consensus 1115 wd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~ 1163 (1178)
|.-.+..+. +.. .+..|++. ......+.|+.+.|.|-...++.-
T Consensus 330 w~~v~~~f~---g~p-~~d~w~l~-~~~e~~g~I~~i~Wg~~k~~~avn 373 (1416)
T KOG3617|consen 330 WLDVNKGFQ---GDP-TIDVWTLN-GKRESLGKISLIRWGPIKSTAAVN 373 (1416)
T ss_pred eeecCcccc---CCC-CcceEEec-CchhhccceEEEEeccccchhhhh
Confidence 975543221 111 24456543 233445679999999866555443
No 347
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.66 E-value=0.043 Score=67.17 Aligned_cols=187 Identities=11% Similarity=0.119 Sum_probs=116.7
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEecCCC-CceE----------EEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEec
Q 001042 893 RGKVVSGSDDQSVLVWDKQTSQLLEELKGHD-AQVS----------CVRMLSGERVLTASHDGTVKMWDVRTDTCVATVG 961 (1178)
Q Consensus 893 ~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~-~~V~----------~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~ 961 (1178)
+..++.++.++.|.-.|..+|+.+..+.... ..+. .+++ .++.++.++.|+.+...|.++|+.+....
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av-~~~~v~v~t~dg~l~ALDa~TGk~~W~~~ 147 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL-YDGKVFFGTLDARLVALDAKTGKVVWSKK 147 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE-ECCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence 5677778888899999999999888765321 1111 1222 24567888899999999999999887764
Q ss_pred CCCCC-EEEEEEeC--CCCEEEEEeC------CCeEEEEECCCCceEEEEecCCc-------------------------
Q 001042 962 RCSSA-VLCMEYDD--STGILAAGGR------DAVANIWDIRAGRQMHKFLGHTK------------------------- 1007 (1178)
Q Consensus 962 ~~~~~-I~~l~~sp--~~~~l~sgs~------dg~I~lwD~~~~~~~~~~~~~~~------------------------- 1007 (1178)
..... -..+.-+| .+..++++.. +|.|.-+|.++|+.+.++..-..
T Consensus 148 ~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~ 227 (527)
T TIGR03075 148 NGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDA 227 (527)
T ss_pred cccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCc
Confidence 32110 01111122 1234555542 68999999999998766532111
Q ss_pred ------cEE-EEEEcCC--EEEEEeCC-----C-----------cEEEEEcCCCeeeeEeccCCCc---------EEEEE
Q 001042 1008 ------WIR-SIRMDRD--TVITGSDD-----W-----------TARMWSISRGTCDAVLACHAGP---------VQCVE 1053 (1178)
Q Consensus 1008 ------~v~-~l~~~~~--~l~sgs~d-----g-----------~I~iwd~~~~~~~~~~~~h~~~---------I~~l~ 1053 (1178)
.+. .+++|++ .+..+..+ + +|.-.|+++|+....++..... ..-+.
T Consensus 228 ~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d 307 (527)
T TIGR03075 228 WKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFD 307 (527)
T ss_pred cccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEE
Confidence 111 2344543 44444421 2 5777889999988777642211 11222
Q ss_pred EecCCC---EEEEEeCCCcEEEEECCCCce
Q 001042 1054 YSSSDR---GIITGSSDGLLRFWENDDGGI 1080 (1178)
Q Consensus 1054 ~spdg~---~L~sgs~Dg~I~iwd~~~~~~ 1080 (1178)
...+|+ .++.++.+|.+.+.|..+|+.
T Consensus 308 ~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 308 LKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred eccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 334666 678899999999999999954
No 348
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.65 E-value=0.011 Score=70.12 Aligned_cols=229 Identities=14% Similarity=0.139 Sum_probs=121.3
Q ss_pred ceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEE
Q 001042 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVS 898 (1178)
Q Consensus 819 ~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~s 898 (1178)
..+.+.........+.++ |+|++++.+ .||...|+... .... ...|. +.-.+|.. .+.+|+
T Consensus 24 ~~k~lg~~~~~p~~ls~n------------pngr~v~V~-g~geY~iyt~~--~~r~--k~~G~-g~~~vw~~-~n~yAv 84 (443)
T PF04053_consen 24 SVKELGSCEIYPQSLSHN------------PNGRFVLVC-GDGEYEIYTAL--AWRN--KAFGS-GLSFVWSS-RNRYAV 84 (443)
T ss_dssp --EEEEE-SS--SEEEE-------------TTSSEEEEE-ETTEEEEEETT--TTEE--EEEEE--SEEEE-T-SSEEEE
T ss_pred EeccCCCCCcCCeeEEEC------------CCCCEEEEE-cCCEEEEEEcc--CCcc--cccCc-eeEEEEec-CccEEE
Confidence 344555555567788877 899999984 47788888732 2222 11222 12224556 455777
Q ss_pred EeCCCcEEEEECCCCcEEEEecCCCCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCE
Q 001042 899 GSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGI 978 (1178)
Q Consensus 899 gs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~ 978 (1178)
-..+++|.|+.--+.+....++. ...+..+.. |..+...+.+ .|.+||+.+++.+..+... .|..+.|+++|++
T Consensus 85 ~~~~~~I~I~kn~~~~~~k~i~~-~~~~~~If~--G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~ 158 (443)
T PF04053_consen 85 LESSSTIKIYKNFKNEVVKSIKL-PFSVEKIFG--GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGEL 158 (443)
T ss_dssp E-TTS-EEEEETTEE-TT------SS-EEEEE---SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSE
T ss_pred EECCCeEEEEEcCccccceEEcC-CcccceEEc--CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCE
Confidence 77788999964322222223332 123444433 6666666544 8999999999999998643 3899999999999
Q ss_pred EEEEeCCCeEEEEECCCC-----------ceEEEEecCCccEEEEEEcCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCC
Q 001042 979 LAAGGRDAVANIWDIRAG-----------RQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAG 1047 (1178)
Q Consensus 979 l~sgs~dg~I~lwD~~~~-----------~~~~~~~~~~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~ 1047 (1178)
++..+.+ .+.+++.... ........-...|.+..|.++.++-.+.. .++. +-.|.. .++..-..
T Consensus 159 val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d~fiYtT~~-~lkY--l~~Ge~-~~i~~ld~ 233 (443)
T PF04053_consen 159 VALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVEDCFIYTTSN-HLKY--LVNGET-GIIAHLDK 233 (443)
T ss_dssp EEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETTEEEEE-TT-EEEE--EETTEE-EEEEE-SS
T ss_pred EEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcCEEEEEcCC-eEEE--EEcCCc-ceEEEcCC
Confidence 9998765 5777764432 02333333356788888988865555555 6665 334433 23332345
Q ss_pred cEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 001042 1048 PVQCVEYSSSDRGIITGSSDGLLRFWENDD 1077 (1178)
Q Consensus 1048 ~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~ 1077 (1178)
++.=+.+.+..+.+.....|+.|..+.++.
T Consensus 234 ~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 234 PLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp --EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred ceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 677778888777888888888888887653
No 349
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.63 E-value=0.049 Score=62.03 Aligned_cols=279 Identities=12% Similarity=0.138 Sum_probs=127.6
Q ss_pred EEecCCCEEEEEeC---CCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCC
Q 001042 888 AINSDRGKVVSGSD---DQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRC 963 (1178)
Q Consensus 888 ~~s~d~~~l~sgs~---dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~ 963 (1178)
||..||+.|+.++. ...+.+.|+.+++..+--.+..........+ +++.++-...+..|+-.|+++.+....+...
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 67889987776654 4567778999988766544332222233344 5566666666678999999998876666556
Q ss_pred CCCEEEEEEe--CCCCEEEEEe----------------------CCCeEEEEECCCCceEEEEecCCccEEEEEEcCC--
Q 001042 964 SSAVLCMEYD--DSTGILAAGG----------------------RDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD-- 1017 (1178)
Q Consensus 964 ~~~I~~l~~s--p~~~~l~sgs----------------------~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~-- 1017 (1178)
...+-...|. .++..++..- ....|.-.|+++|+....+ ....++.-+.++|.
T Consensus 122 ~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~-~~~~wlgH~~fsP~dp 200 (386)
T PF14583_consen 122 DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVF-EDTDWLGHVQFSPTDP 200 (386)
T ss_dssp TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEE-EESS-EEEEEEETTEE
T ss_pred cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEE-ecCccccCcccCCCCC
Confidence 6655555553 3555443221 1123666677777654433 35556677777544
Q ss_pred -EEEEEeC---CC-cEEEEEcCC-CeeeeEeccCC--CcEEEEEEecCCCEEEEEe-----CCCcEEEEECCCCceEEEE
Q 001042 1018 -TVITGSD---DW-TARMWSISR-GTCDAVLACHA--GPVQCVEYSSSDRGIITGS-----SDGLLRFWENDDGGIKCVK 1084 (1178)
Q Consensus 1018 -~l~sgs~---dg-~I~iwd~~~-~~~~~~~~~h~--~~I~~l~~spdg~~L~sgs-----~Dg~I~iwd~~~~~~~~~~ 1084 (1178)
.++-|-+ +. .-|||-+++ |...+.+..+. ..+..=-|.|||..|.--+ .+..|.-+|..+++...+.
T Consensus 201 ~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~ 280 (386)
T PF14583_consen 201 TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLM 280 (386)
T ss_dssp EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEE
T ss_pred CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEE
Confidence 4444432 22 136676543 33333333332 2344456899998876432 2446777888888544433
Q ss_pred EecccCCcEEEEecCCCEEEEEeCCC----------------cEEEEEcCCCccccccCCCCCccceeEeeccCCCcc-c
Q 001042 1085 NVTIHSSAILSINAGDHWLGIGAADN----------------SMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVA-V 1147 (1178)
Q Consensus 1085 ~~~~h~~~i~~is~dg~~Lasgs~Dg----------------~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~-~ 1147 (1178)
..+ ...=...++||++++-=+.|. -|+++++..++.......+ .+|... .+|.. .
T Consensus 281 ~~p--~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~---~sw~v~---~~~~q~~ 352 (386)
T PF14583_consen 281 EMP--WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHD---TSWKVL---DGDRQVT 352 (386)
T ss_dssp EE---SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE----------B---TTBSSTT
T ss_pred eCC--ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeecc---Ccceee---cCCCccC
Confidence 332 111122268898887644442 3455666543321111111 112221 11111 1
Q ss_pred EEEEEEcCCCCEEE-EEeCCCcEEEEECC
Q 001042 1148 VRCIASDLERKRIC-SGGRNGLLRLWEAT 1175 (1178)
Q Consensus 1148 V~~lafspdg~~La-s~s~Dg~V~IWdv~ 1175 (1178)
=-...|||||++++ +++..|...||=++
T Consensus 353 hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 353 HPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp ----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred CCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 24578999999865 55567877776543
No 350
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.63 E-value=0.13 Score=57.59 Aligned_cols=233 Identities=13% Similarity=0.118 Sum_probs=139.9
Q ss_pred CCCCEEEEEeC----------CCcEEEEcCCCCCceeeEeecc-------cccceEEEecCCCEEEEE--eCCCcEEEEE
Q 001042 849 EDAGFFISGST----------DCLVKIWDPSLRGSELRATLKG-------HTRTVRAINSDRGKVVSG--SDDQSVLVWD 909 (1178)
Q Consensus 849 ~d~~~Lasgs~----------Dg~I~iWd~~~~~~~~~~~l~~-------h~~~V~~~s~d~~~l~sg--s~dg~I~iwd 909 (1178)
||++.+++++. .-.|.+||..+-....-..+.. -.....+++.|+++++.. +-...|.|.|
T Consensus 45 pdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVD 124 (342)
T PF06433_consen 45 PDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVD 124 (342)
T ss_dssp TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEE
T ss_pred CCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEE
Confidence 89998887542 3469999976332222122222 122334778999998875 3456899999
Q ss_pred CCCCcEEEEecCCCCceEEEEEeCCCeEEEEeCCCeEEEEeCC-CCeEEEEe----cCCCCC-EEEEEEeCCCCEEEEEe
Q 001042 910 KQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVR-TDTCVATV----GRCSSA-VLCMEYDDSTGILAAGG 983 (1178)
Q Consensus 910 ~~t~~~~~~l~~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~-~~~~~~~~----~~~~~~-I~~l~~sp~~~~l~sgs 983 (1178)
+..++.+.++... .+..+--..+..+.+-|.||++.-..+. .|+...+. .....+ +..-++...+..++-.+
T Consensus 125 l~~~kvv~ei~~P--GC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~S 202 (342)
T PF06433_consen 125 LAAKKVVGEIDTP--GCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVS 202 (342)
T ss_dssp TTTTEEEEEEEGT--SEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEB
T ss_pred CCCCceeeeecCC--CEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEe
Confidence 9999998887632 2333322345678899999999988887 45544322 122222 23445566666666678
Q ss_pred CCCeEEEEECCCCceE--EEEecC------Cc----cEEEEEEc--CCEEEEEe---CCC-------cEEEEEcCCCeee
Q 001042 984 RDAVANIWDIRAGRQM--HKFLGH------TK----WIRSIRMD--RDTVITGS---DDW-------TARMWSISRGTCD 1039 (1178)
Q Consensus 984 ~dg~I~lwD~~~~~~~--~~~~~~------~~----~v~~l~~~--~~~l~sgs---~dg-------~I~iwd~~~~~~~ 1039 (1178)
.+|.|+-.|+...... ..+... .+ .-.-++++ .+.|.+-- .+| .|-++|+.+++.+
T Consensus 203 y~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv 282 (342)
T PF06433_consen 203 YEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRV 282 (342)
T ss_dssp TTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEE
T ss_pred cCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEE
Confidence 8999999998765432 222111 11 11123443 23333221 122 3777899999999
Q ss_pred eEeccCCCcEEEEEEecCCC-EEEEEe-CCCcEEEEECCCCceEEEEEe
Q 001042 1040 AVLACHAGPVQCVEYSSSDR-GIITGS-SDGLLRFWENDDGGIKCVKNV 1086 (1178)
Q Consensus 1040 ~~~~~h~~~I~~l~~spdg~-~L~sgs-~Dg~I~iwd~~~~~~~~~~~~ 1086 (1178)
..+.. ..++.++..+.+.+ +|++.+ .++.+.+||..+| +.+.++
T Consensus 283 ~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG--k~~~~~ 328 (342)
T PF06433_consen 283 ARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG--KLVRSI 328 (342)
T ss_dssp EEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT----EEEEE
T ss_pred EEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC--cEEeeh
Confidence 88873 34688999998876 554443 5789999999999 444444
No 351
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.00088 Score=73.93 Aligned_cols=236 Identities=11% Similarity=0.029 Sum_probs=133.1
Q ss_pred ccccCCcceEEEEecCCCC-cccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeecc
Q 001042 763 EASGIGRSWVQSMFSREAS-SRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKR 839 (1178)
Q Consensus 763 ~~~gh~~~i~~~aFSpdg~-~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~ 839 (1178)
-..+|+.-|..++|||..+ ++..++-+ |+|.|+.+.. ++..+..| ..+++++|.-
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~-------------------~vssy~a~-~~~wSC~wDl-- 245 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC-------------------VVSSYIAY-NQIWSCCWDL-- 245 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccce-------------------eeeheecc-CCceeeeecc--
Confidence 5678889999999999988 45555554 9999999766 56667777 7888888852
Q ss_pred ceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecc--cccceEEE--------ecCCCEEEEEeCCCcEEEEE
Q 001042 840 EVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKG--HTRTVRAI--------NSDRGKVVSGSDDQSVLVWD 909 (1178)
Q Consensus 840 ~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~--h~~~V~~~--------s~d~~~l~sgs~dg~I~iwd 909 (1178)
.+.+++..|...|.|.|+|+....... ..+.+ ...+|..+ .+.|..++....+ +..|+
T Consensus 246 ---------de~h~IYaGl~nG~VlvyD~R~~~~~~-~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~e 313 (463)
T KOG1645|consen 246 ---------DERHVIYAGLQNGMVLVYDMRQPEGPL-MELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYE 313 (463)
T ss_pred ---------CCcceeEEeccCceEEEEEccCCCchH-hhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhh
Confidence 557788899999999999987443322 22222 23344433 2334444444432 44555
Q ss_pred CCC--CcEEEEec-CCCCceEEEEEeC--CCeEEEEeCCCe------E-EEEeCCCCeEEEEec-CC-CC---C---EEE
Q 001042 910 KQT--SQLLEELK-GHDAQVSCVRMLS--GERVLTASHDGT------V-KMWDVRTDTCVATVG-RC-SS---A---VLC 969 (1178)
Q Consensus 910 ~~t--~~~~~~l~-~h~~~V~~l~~~~--~~~l~sgs~dg~------V-~iwd~~~~~~~~~~~-~~-~~---~---I~~ 969 (1178)
..- +.....+. +..+...++.+.+ +..+++.-.+-+ + .--|-.+|..+...+ .+ .+ . -..
T Consensus 314 i~~s~~~~p~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~a 393 (463)
T KOG1645|consen 314 IVFSAECLPCVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQA 393 (463)
T ss_pred hhccccCCCcccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccc
Confidence 432 11111111 1234445555542 344444433210 0 011222333322211 11 00 0 011
Q ss_pred EEEeCCCCEEE-EEeCCCeEEEEECCCCceEEEEecCCccEEEEEE---cCC-EEEEEeCCCcEEEEEcC
Q 001042 970 MEYDDSTGILA-AGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM---DRD-TVITGSDDWTARMWSIS 1034 (1178)
Q Consensus 970 l~~sp~~~~l~-sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~---~~~-~l~sgs~dg~I~iwd~~ 1034 (1178)
+.-.++.++++ +|+..+.+.+||..+.+.++++.-. .+|.+++. +++ +|++- .|..++||..+
T Consensus 394 i~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~~~-epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~e 461 (463)
T KOG1645|consen 394 IRAVEDNNYIVVVGDSTNELILQDPHSFEVVQTLALS-EPVLDICPNDTNGSSYLALL-TDDRVHIYKNE 461 (463)
T ss_pred eeccccccEEEEecCCcceeEEeccchhheeeecccC-cceeecceeecCCcchhhhe-ecceEEEEecC
Confidence 22233444444 4456678999999999999988544 77888776 344 44444 45578887654
No 352
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.60 E-value=0.0052 Score=72.79 Aligned_cols=269 Identities=11% Similarity=0.062 Sum_probs=149.5
Q ss_pred eEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceecccccc
Q 001042 771 WVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDR 848 (1178)
Q Consensus 771 i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s 848 (1178)
+.--+++-.+++++.|++. +.+++..++.. ......|-.+.+..+..|
T Consensus 36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~------------------~~~~~~~~~~~~~~~~vs------------ 85 (726)
T KOG3621|consen 36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEM------------------RKLKNEGATGITCVRSVS------------ 85 (726)
T ss_pred EEEEEeecCCceEEEecccceEEEEecCchhh------------------hcccccCccceEEEEEec------------
Confidence 3333889999999999888 88998887763 223333444555555555
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCCceeeE----eecccccceEE--EecCCCEEEEEeCCCcEEEEECCCCc----EEEE
Q 001042 849 EDAGFFISGSTDCLVKIWDPSLRGSELRA----TLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQ----LLEE 918 (1178)
Q Consensus 849 ~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~----~l~~h~~~V~~--~s~d~~~l~sgs~dg~I~iwd~~t~~----~~~~ 918 (1178)
++..++|.|+..|.|.++.++........ .-..|...|+| |++++..+++|...|+|..-.+.+.. ..+.
T Consensus 86 ~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~ 165 (726)
T KOG3621|consen 86 SVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQE 165 (726)
T ss_pred chhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccce
Confidence 78889999999999999987642221111 11236677885 58899999999999999998887721 1223
Q ss_pred ecCCCCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCC--EEEEEEeCC-----CCEEEEEeCCCeEEEE
Q 001042 919 LKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSA--VLCMEYDDS-----TGILAAGGRDAVANIW 991 (1178)
Q Consensus 919 l~~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~--I~~l~~sp~-----~~~l~sgs~dg~I~lw 991 (1178)
+-...+.|..+.+..+..+++..... .+.+++.+...+.-+...+. -...+|-|. ...|+++--. .++|
T Consensus 166 il~~ds~IVQlD~~q~~LLVStl~r~--~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG--~RlW 241 (726)
T KOG3621|consen 166 ILSEDSEIVQLDYLQSYLLVSTLTRC--ILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG--LRLW 241 (726)
T ss_pred eeccCcceEEeecccceehHhhhhhh--heeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCC--CceE
Confidence 33345677777777666655544332 34444433311111111111 233444432 2344444333 4666
Q ss_pred ECCC-CceEEEEe----------------c--------------CCccEEEEEEcCCEEEEEeCCCcEEEEEcCCCeeee
Q 001042 992 DIRA-GRQMHKFL----------------G--------------HTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDA 1040 (1178)
Q Consensus 992 D~~~-~~~~~~~~----------------~--------------~~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~ 1040 (1178)
...- |+.+++.. . |-+-..+...+.+.+++-++-| |+|+|.++.+.+.
T Consensus 242 ead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~~vLa~te~G-iyv~d~~~~~v~l 320 (726)
T KOG3621|consen 242 EADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSDRVLAWTEVG-IYVFDSNNSQVYL 320 (726)
T ss_pred EeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeecceEEEeecce-EEEEEeccceEEE
Confidence 6542 33333321 0 0111122222445555555555 8888876654432
Q ss_pred EeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 001042 1041 VLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDD 1077 (1178)
Q Consensus 1041 ~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~ 1077 (1178)
-.. ....|..++-+ |+-|.+-..||.+++..+.+
T Consensus 321 ~se-~~~DI~dVs~~--~neiFvL~~d~~l~~~sv~s 354 (726)
T KOG3621|consen 321 WSE-GGHDILDVSHC--GNEIFVLNLDRGLKVESVAS 354 (726)
T ss_pred eec-CCCceeEEeec--CceEEEEecCCceeEEEeeh
Confidence 221 23345444433 55555555566666665544
No 353
>KOG2432 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=0.0025 Score=71.13 Aligned_cols=186 Identities=19% Similarity=0.284 Sum_probs=132.2
Q ss_pred CCCCeEEEEEEEecCCCCHHHHHhccCCCCccCCeEEEEEcCCChHHHHHHHHHHHHHHhhccCCCCccHHHHHHhhccc
Q 001042 91 GDGSKIYVSCISFRDPVSEDIAEAYRIPANSFADKCICLVSRSPSFRILRNALEEIYSLCFLSDGSSKPLWDVISHLVSN 170 (1178)
Q Consensus 91 ~~g~~~Yg~cl~f~e~~~~~~~~~~~~~~~~~~~~~icllS~~p~~~~f~~~L~~i~~~~~~~~~~~~~~~~~i~~~l~~ 170 (1178)
.||..+||+.. ..+.-. +....-|..|++.|+|+.|||.+|+..|..|...++..+ ..-+ +.+.+-+..
T Consensus 106 ~d~~ylyG~Vf--fRQ~~D------k~l~RGy~QKSvviis~LPf~~lf~tvl~~iap~yFe~g--t~~i-eaa~~~i~~ 174 (565)
T KOG2432|consen 106 QDGMYLYGFVF--FRQTRD------KTLKRGYFQKSVVIISFLPFFSLFYTVLFQIAPFYFELG--TNAI-EAACCGIDR 174 (565)
T ss_pred CCCceeEEEEe--eeeech------hhhhhhhhhhceEEEEecccccccchHHhhhchHHHhcc--cchh-hhhhccccC
Confidence 46666677763 222111 111235677999999999999999999999988776433 2233 344444556
Q ss_pred CCCCCCCCceEEeeeccceeEEeCCCCCCCCCCCc------------c-------hHHHhccCC--hhhHHHHHHHHhcc
Q 001042 171 VPLPTPGKNRVLFAIENCLLSVEAPPKEGLPHADI------------S-------FQPLVQLLD--VDNLITLFTAVLLE 229 (1178)
Q Consensus 171 ~p~P~~g~~~~~~~~~~~~~~~~~p~~~~lp~~~~------------~-------~~~l~~~l~--~~~~l~l~~~~L~E 229 (1178)
-|.|.||.. ..+.+.++.+.+..|....+|.... + =..||.++. ...+-+++..+|+.
T Consensus 175 Wp~p~~Gk~-LELPll~c~~KI~lP~a~~~p~~ar~~~~~e~~~~~ts~~~g~vhe~dLf~~~r~v~~QL~tLWELvL~g 253 (565)
T KOG2432|consen 175 WPAPVPGKT-LELPLLGCKKKIRLPTAHSLPFEARKTGAVELRDTNTSVNLGGVHEIDLFRSSRDVNLQLKTLWELVLLG 253 (565)
T ss_pred CCCccCCce-eeecccceeeeeeccccccCcccccccceeeeccCccccccCCcchhHHHHhhHHHHHHHHHHHHHHHhC
Confidence 799999976 5667777778888887777776510 0 124555543 23456788999999
Q ss_pred ccEEEEeCCcchHHHHHHHHHHcccccCCCceeeccc---chhhh---hhccCCcceEEeecCCC
Q 001042 230 RRILLRSNKYSLLTLVSEAICHLIYPFRWQHVYIPLL---FFSGV---DYIDAPTPYMMGLHSGV 288 (1178)
Q Consensus 230 ~~il~~s~~~~~ls~~~~al~~ll~Pf~w~~~~IP~l---P~~l~---~~l~aP~P~iiGv~~~~ 288 (1178)
.-|+++...++.-+..+.+++.|+-|+.+.-.+=|+- =.... .-.++|-+-|.||..-+
T Consensus 254 EPilivaptPs~~Se~V~~lv~liaPL~~c~dfRPYFTIHDseF~e~tS~~~sdP~~iLGVTNpF 318 (565)
T KOG2432|consen 254 EPILIVAPTPSHCSEIVQLLVRLIAPLIYCPDFRPYFTIHDSEFREYTSNVDSDPLVILGVTNPF 318 (565)
T ss_pred CCeEEecCCchhhHHHHHHHHHHhhcceeCCCCCceeeeccHHHHHHHhccCCCCceEEecCCHH
Confidence 9999999999999999999999999999987666654 33333 44578988899987644
No 354
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.49 E-value=0.046 Score=64.31 Aligned_cols=111 Identities=19% Similarity=0.190 Sum_probs=72.4
Q ss_pred EEEEEEecC-CCEEEEE----eCCCc----EEEEECCCCceEEEEEec-ccCCcE--EEEecCCCEEEEEeCCCcEEEEE
Q 001042 1049 VQCVEYSSS-DRGIITG----SSDGL----LRFWENDDGGIKCVKNVT-IHSSAI--LSINAGDHWLGIGAADNSMSLFH 1116 (1178)
Q Consensus 1049 I~~l~~spd-g~~L~sg----s~Dg~----I~iwd~~~~~~~~~~~~~-~h~~~i--~~is~dg~~Lasgs~Dg~I~iwd 1116 (1178)
..++.||-. ...+.+- +.+|. -.+|++..++.+++.... .....+ .+.+|+...++.|+.||+|.+||
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD 287 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYD 287 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence 356666653 3334332 23443 346776655444443222 123333 34489999999999999999999
Q ss_pred cCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001042 1117 RPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATI 1176 (1178)
Q Consensus 1117 ~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~t 1176 (1178)
...+. .......-..+.++|+|+|..+++|+.-|.+.+||+.-
T Consensus 288 ~~~~~-----------------t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 288 TTRGV-----------------TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred cCCCe-----------------eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 86331 01112234578899999999999999999999999864
No 355
>PHA02713 hypothetical protein; Provisional
Probab=97.48 E-value=0.004 Score=76.79 Aligned_cols=188 Identities=10% Similarity=0.096 Sum_probs=107.4
Q ss_pred CCCEEEEEeCC------CeEEEEECCCCceEE--EEecCCccEEEEEEcCCEEEEEeCCC-----cEEEEEcCCCeeee-
Q 001042 975 STGILAAGGRD------AVANIWDIRAGRQMH--KFLGHTKWIRSIRMDRDTVITGSDDW-----TARMWSISRGTCDA- 1040 (1178)
Q Consensus 975 ~~~~l~sgs~d------g~I~lwD~~~~~~~~--~~~~~~~~v~~l~~~~~~l~sgs~dg-----~I~iwd~~~~~~~~- 1040 (1178)
++...++||.+ ..+..||..++.... .+..........+.++...+.|+.++ ++..||..+++...
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~ 382 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML 382 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence 55666666643 347788887764321 11112223344555777777777654 47889987764322
Q ss_pred -EeccCCCcEEEEEEecCCCEEEEEeCCC-----------------------cEEEEECCCCceEEEEEecccCCcEEEE
Q 001042 1041 -VLACHAGPVQCVEYSSSDRGIITGSSDG-----------------------LLRFWENDDGGIKCVKNVTIHSSAILSI 1096 (1178)
Q Consensus 1041 -~~~~h~~~I~~l~~spdg~~L~sgs~Dg-----------------------~I~iwd~~~~~~~~~~~~~~h~~~i~~i 1096 (1178)
.+.........+ .-+|+..+.||.++ .+..||..+.++..+..+..........
T Consensus 383 ~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~ 460 (557)
T PHA02713 383 PDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVV 460 (557)
T ss_pred CCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEE
Confidence 111111111122 23577777777552 4778888887666555443322222233
Q ss_pred ecCCCEEEEEeCCC------cEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCC--c
Q 001042 1097 NAGDHWLGIGAADN------SMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNG--L 1168 (1178)
Q Consensus 1097 s~dg~~Lasgs~Dg------~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg--~ 1168 (1178)
.-+|+..+.|+.++ .+..||..+. ..|.....+.........++ -+|+..++||.|| +
T Consensus 461 ~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~------------~~W~~~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~~~~ 526 (557)
T PHA02713 461 SHKDDIYVVCDIKDEKNVKTCIFRYNTNTY------------NGWELITTTESRLSALHTIL--HDNTIMMLHCYESYML 526 (557)
T ss_pred EECCEEEEEeCCCCCCccceeEEEecCCCC------------CCeeEccccCcccccceeEE--ECCEEEEEeeecceee
Confidence 55777777777542 3566776530 14665555544333333333 3788999999998 7
Q ss_pred EEEEECCCCC
Q 001042 1169 LRLWEATINI 1178 (1178)
Q Consensus 1169 V~IWdv~tg~ 1178 (1178)
+..||+.|++
T Consensus 527 ~e~yd~~~~~ 536 (557)
T PHA02713 527 QDTFNVYTYE 536 (557)
T ss_pred hhhcCccccc
Confidence 8888888763
No 356
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.46 E-value=0.04 Score=64.23 Aligned_cols=285 Identities=13% Similarity=0.110 Sum_probs=149.2
Q ss_pred cCCCCccccccc-----------ceeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceeccc
Q 001042 777 SREASSRSHSFS-----------RVRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLV 845 (1178)
Q Consensus 777 Spdg~~las~~~-----------dI~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~ 845 (1178)
||||++++.... ++.+||+++++ +..+......+....||
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~--------------------~~~l~~~~~~~~~~~~s--------- 51 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGE--------------------ITPLTPPPPKLQDAKWS--------- 51 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTE--------------------EEESS-EETTBSEEEE----------
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCc--------------------eEECcCCccccccceee---------
Confidence 678877666322 27788888755 22233336667777777
Q ss_pred cccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecc------------------cccceEEEecCCCEEEEEeCC-CcEE
Q 001042 846 GDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKG------------------HTRTVRAINSDRGKVVSGSDD-QSVL 906 (1178)
Q Consensus 846 ~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~------------------h~~~V~~~s~d~~~l~sgs~d-g~I~ 906 (1178)
|+|+.+|... ++.|.+++... +.....+..| .......+|||+++|+....| ..|.
T Consensus 52 ---P~g~~~~~v~-~~nly~~~~~~-~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~ 126 (353)
T PF00930_consen 52 ---PDGKYIAFVR-DNNLYLRDLAT-GQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVP 126 (353)
T ss_dssp ---SSSTEEEEEE-TTEEEEESSTT-SEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-
T ss_pred ---cCCCeeEEEe-cCceEEEECCC-CCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCc
Confidence 8999999887 56899998652 2222222223 011223479999998876543 3343
Q ss_pred EEECCCCcEEEEecCCC---CceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEE--Ee---cCCCCCEEEEEEeCCCC
Q 001042 907 VWDKQTSQLLEELKGHD---AQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVA--TV---GRCSSAVLCMEYDDSTG 977 (1178)
Q Consensus 907 iwd~~t~~~~~~l~~h~---~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~--~~---~~~~~~I~~l~~sp~~~ 977 (1178)
.+.+. ...... ..+..+.+. .|..... -.+.++|+.+++... .. ......+..+.|.++++
T Consensus 127 ~~~~~------~~~~~~~~yp~~~~~~YPk~G~~np~----v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~ 196 (353)
T PF00930_consen 127 EYPLP------DYSPPDSQYPEVESIRYPKAGDPNPR----VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGK 196 (353)
T ss_dssp EEEEE------EESSSTESS-EEEEEE--BTTS---E----EEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTE
T ss_pred eEEee------ccCCccccCCcccccccCCCCCcCCc----eEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCc
Confidence 33221 111111 134455554 3433211 246778988886532 11 23456788999999998
Q ss_pred EEEEEe--CC---CeEEEEECCCCceEEEEe-cCCccE---EEEEE---cCC-EEEEEeCCCcEE--EEEcCCCeeeeEe
Q 001042 978 ILAAGG--RD---AVANIWDIRAGRQMHKFL-GHTKWI---RSIRM---DRD-TVITGSDDWTAR--MWSISRGTCDAVL 1042 (1178)
Q Consensus 978 ~l~sgs--~d---g~I~lwD~~~~~~~~~~~-~~~~~v---~~l~~---~~~-~l~sgs~dg~I~--iwd~~~~~~~~~~ 1042 (1178)
.++..- .+ ..+.++|..+++...... ....+| ....+ +++ ++.....||.-+ +++...+. ...+
T Consensus 197 ~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~l 275 (353)
T PF00930_consen 197 RLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQL 275 (353)
T ss_dssp EEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEES
T ss_pred EEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eecc
Confidence 444433 22 347778888776543332 222332 12332 233 555555777644 45555454 3455
Q ss_pred ccCCCcEEE-EEEecCCCEEE-EEeCC----CcEEEEECC-CCceEEEEEecccCCcEEEEecCCCEEEEEe
Q 001042 1043 ACHAGPVQC-VEYSSSDRGII-TGSSD----GLLRFWEND-DGGIKCVKNVTIHSSAILSINAGDHWLGIGA 1107 (1178)
Q Consensus 1043 ~~h~~~I~~-l~~spdg~~L~-sgs~D----g~I~iwd~~-~~~~~~~~~~~~h~~~i~~is~dg~~Lasgs 1107 (1178)
....-.|+. +.++++++.|. ++..+ ..+..-+++ ++..+++....+.. .-.++||+|++++...
T Consensus 276 T~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~-~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 276 TSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDH-YSASFSPDGKYYVDTY 346 (353)
T ss_dssp S-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTT-EEEEE-TTSSEEEEEE
T ss_pred ccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCc-eEEEECCCCCEEEEEE
Confidence 544556755 67888877665 44432 245555666 55333332211111 2467799999887644
No 357
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.45 E-value=0.011 Score=71.12 Aligned_cols=223 Identities=8% Similarity=-0.064 Sum_probs=129.9
Q ss_pred cCCCEEEEEeC-CCcEEEEECCCCcEEEEec------CCC---------CceEEE-----EEe-CCCeEE-EEeCCCeEE
Q 001042 891 SDRGKVVSGSD-DQSVLVWDKQTSQLLEELK------GHD---------AQVSCV-----RML-SGERVL-TASHDGTVK 947 (1178)
Q Consensus 891 ~d~~~l~sgs~-dg~I~iwd~~t~~~~~~l~------~h~---------~~V~~l-----~~~-~~~~l~-sgs~dg~V~ 947 (1178)
.||++++.-.. +..|-..+++..++-+.+. .|. +.|.+- -++ ++..+. +.-..+.+.
T Consensus 139 ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vS 218 (635)
T PRK02888 139 YDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFT 218 (635)
T ss_pred cceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEE
Confidence 57777777653 4566666666555433322 121 122111 112 233232 233356778
Q ss_pred EEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCC----CeEEEEECCCCceEEEEecCCccEEEEEEcCCEEEEEe
Q 001042 948 MWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRD----AVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGS 1023 (1178)
Q Consensus 948 iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~d----g~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~~l~sgs 1023 (1178)
+.|..+.+...++.-. .....++++++|+++++.+.+ +++...+..+...+..+.. ..+..+.-++++...
T Consensus 219 vID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni--~~iea~vkdGK~~~V-- 293 (635)
T PRK02888 219 AVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI--ARIEEAVKAGKFKTI-- 293 (635)
T ss_pred EEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch--HHHHHhhhCCCEEEE--
Confidence 8888887776665432 344678899999999887632 2333333322221111110 011111124554444
Q ss_pred CCCcEEEEEcCC----C-eeeeEeccCCCcEEEEEEecCCCEEEEEe-CCCcEEEEECCCCce----------EEEEEec
Q 001042 1024 DDWTARMWSISR----G-TCDAVLACHAGPVQCVEYSSSDRGIITGS-SDGLLRFWENDDGGI----------KCVKNVT 1087 (1178)
Q Consensus 1024 ~dg~I~iwd~~~----~-~~~~~~~~h~~~I~~l~~spdg~~L~sgs-~Dg~I~iwd~~~~~~----------~~~~~~~ 1087 (1178)
.++.|.+.|.++ + +.+..+. -......+.++|||+++++++ .+.+|.+.|+.+.+. ....+..
T Consensus 294 ~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve 372 (635)
T PRK02888 294 GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE 372 (635)
T ss_pred CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec
Confidence 367899999987 3 3444443 455678999999999977665 689999999987531 1233333
Q ss_pred ccCCc-EEEEecCCCEEEEEeCCCcEEEEEcCC
Q 001042 1088 IHSSA-ILSINAGDHWLGIGAADNSMSLFHRPQ 1119 (1178)
Q Consensus 1088 ~h~~~-i~~is~dg~~Lasgs~Dg~I~iwd~~~ 1119 (1178)
-..++ -+++..+|....+-.-|..|..||+..
T Consensus 373 vGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 373 LGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 33333 467788888888888999999999874
No 358
>KOG2080 consensus Uncharacterized conserved protein, contains DENN and RUN domains [Signal transduction mechanisms]
Probab=97.39 E-value=0.00018 Score=85.10 Aligned_cols=133 Identities=24% Similarity=0.307 Sum_probs=117.7
Q ss_pred cceeEEeCCCCCCCCCCCcchHHHhccCChhhHHHHHHHHhccccEEEEeCCcchHHHHHHHHHHcccccCCCceeeccc
Q 001042 187 NCLLSVEAPPKEGLPHADISFQPLVQLLDVDNLITLFTAVLLERRILLRSNKYSLLTLVSEAICHLIYPFRWQHVYIPLL 266 (1178)
Q Consensus 187 ~~~~~~~~p~~~~lp~~~~~~~~l~~~l~~~~~l~l~~~~L~E~~il~~s~~~~~ls~~~~al~~ll~Pf~w~~~~IP~l 266 (1178)
+.....++|....+|..+-+....|..+..+..+.++.+-++|++.+.+|..++++.-.++.+..|=+||.|+-.++|..
T Consensus 34 g~~~~vq~P~~~~~~f~~~s~~s~~~~~pde~f~r~~~~f~~~~~dl~~~~~~sr~~g~n~~~~pL~kpla~ypenvpwn 113 (1295)
T KOG2080|consen 34 GTTLVVQRPGPKELPFFDDSIGSIFDYLPDEKFIRLFSCFLLEHQDLLCSKDLSRLMGVNESLLPLSKPLAWYPENVPWN 113 (1295)
T ss_pred CccceeeCCCCccccceeccccchhccCccHHHHHHHHHHHHhhhhccccccchhhhccCcccccccchhhcCccCCCCC
Confidence 33446678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhccCCcceEEeecCCCCccccCCCcEEEEEcCCCeeeCCCCCCCCCch
Q 001042 267 FFSGVDYIDAPTPYMMGLHSGVDTSNLAMDGVVVVDLEYNRICTTEEIPPIPEP 320 (1178)
Q Consensus 267 P~~l~~~l~aP~P~iiGv~~~~~~~~~~~~~~~~vdlD~~~i~~~~~~~~lP~~ 320 (1178)
|.+-.++..+|+|+-+|.....+..+... .-.+++.|+|+=+.+.+++-.|+-
T Consensus 114 Pfd~~~~~ml~mP~gl~frtq~~~~Ep~F-hSfiitredG~r~ygf~l~fyeev 166 (1295)
T KOG2080|consen 114 PFDKLDFFMLCMPKGLGFRTQDDVPEPQF-HSFIITREDGSRTYGFDLTFYEEV 166 (1295)
T ss_pred cccccceeeeccccccceeccCCCCchhh-heeeEEcccCccccCcceeechhh
Confidence 99999999999999999876543333222 248999999999999988888764
No 359
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.37 E-value=0.11 Score=61.00 Aligned_cols=265 Identities=13% Similarity=0.070 Sum_probs=137.6
Q ss_pred ceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccce-EEEecCCCEEEEEeCCCcEEE
Q 001042 829 AITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTV-RAINSDRGKVVSGSDDQSVLV 907 (1178)
Q Consensus 829 ~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V-~~~s~d~~~l~sgs~dg~I~i 907 (1178)
.|+++.|+ ++..-|++|...|.|.||....+...-......+...- ..++. .++.-.+
T Consensus 3 ~v~~vs~a------------~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~---------~~~~~~l 61 (395)
T PF08596_consen 3 SVTHVSFA------------PETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSL---------NNSPGKL 61 (395)
T ss_dssp -EEEEEEE------------TTTTEEEEEETTS-EEEEEEEE------------------S--G---------GGSS-SE
T ss_pred eEEEEEec------------CCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccc---------cCCCcce
Confidence 47778887 78889999999999999986521111000000000000 00100 0011112
Q ss_pred EECCC---------CcEEEEecCCCCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEe--cC------CCCCEEEE
Q 001042 908 WDKQT---------SQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATV--GR------CSSAVLCM 970 (1178)
Q Consensus 908 wd~~t---------~~~~~~l~~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~--~~------~~~~I~~l 970 (1178)
-|+.. -.+...+....++|++++.++=..+++|..+|.+.|.|++....+..- .. ....++++
T Consensus 62 ~di~~r~~~~~~~gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~i 141 (395)
T PF08596_consen 62 TDISDRAPPSLKEGFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSI 141 (395)
T ss_dssp EE-GGG--TT-SEEEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEE
T ss_pred EEehhhCCcccccccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEE
Confidence 22211 123344555689999999999999999999999999999888877652 12 23467888
Q ss_pred EEeC-----CC---CEEEEEeCCCeEEEEECC--C-CceE----EEEecCCccEEEEEE-cC------------------
Q 001042 971 EYDD-----ST---GILAAGGRDAVANIWDIR--A-GRQM----HKFLGHTKWIRSIRM-DR------------------ 1016 (1178)
Q Consensus 971 ~~sp-----~~---~~l~sgs~dg~I~lwD~~--~-~~~~----~~~~~~~~~v~~l~~-~~------------------ 1016 (1178)
.|.- |+ -.+++|+..|.+.+|.+- . +.-. .....+.+.|..+.. +.
T Consensus 142 eF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~ 221 (395)
T PF08596_consen 142 EFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSK 221 (395)
T ss_dssp EEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGG
T ss_pred EEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhcccc
Confidence 8863 33 478899999999999874 1 2111 112234555555542 10
Q ss_pred ----CEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEe-----cCCCEEEEEeCCCcEEEEECCCCceEEEEEec
Q 001042 1017 ----DTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYS-----SSDRGIITGSSDGLLRFWENDDGGIKCVKNVT 1087 (1178)
Q Consensus 1017 ----~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~s-----pdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~ 1087 (1178)
..++....+..++++...+.+..+......-....+.+- ..+..|++-..+|.|+++.+..- +.+....
T Consensus 222 g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L--kei~~~~ 299 (395)
T PF08596_consen 222 GISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL--KEIKSVS 299 (395)
T ss_dssp T----EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT----EEEEEE
T ss_pred CCCcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc--hHhhccc
Confidence 134555557789999998877665544222233344442 35667888889999999999876 4444433
Q ss_pred ccC------CcEEEEecCCCEEEEEeCCCcEEEEEc
Q 001042 1088 IHS------SAILSINAGDHWLGIGAADNSMSLFHR 1117 (1178)
Q Consensus 1088 ~h~------~~i~~is~dg~~Lasgs~Dg~I~iwd~ 1117 (1178)
... ..-.+++.+|+.++-.+. ..+.++.+
T Consensus 300 l~~~~d~~~~~~ssis~~Gdi~~~~gp-sE~~l~sv 334 (395)
T PF08596_consen 300 LPPPLDSRRLSSSSISRNGDIFYWTGP-SEIQLFSV 334 (395)
T ss_dssp -SS---HHHHTT-EE-TTS-EEEE-SS-SEEEEEEE
T ss_pred CCCccccccccccEECCCCCEEEEeCc-ccEEEEEE
Confidence 321 122556788887666543 34444444
No 360
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.32 E-value=0.06 Score=63.86 Aligned_cols=235 Identities=11% Similarity=0.045 Sum_probs=114.7
Q ss_pred ecCCCCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce
Q 001042 919 LKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQ 998 (1178)
Q Consensus 919 l~~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~ 998 (1178)
+.........+.+++...+++.+.||.-.++.....+.... +.-...+|.+.+ .+|+-..++.|.++.--+.+.
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~ 101 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAF-----GSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEV 101 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEE-----EE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-T
T ss_pred CCCCCcCCeeEEECCCCCEEEEEcCCEEEEEEccCCccccc-----CceeEEEEecCc-cEEEEECCCeEEEEEcCcccc
Confidence 33345557888898666666668888888988554444332 233567888844 477777788899964323222
Q ss_pred EEEEecCCccEEEEEEcCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 001042 999 MHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDG 1078 (1178)
Q Consensus 999 ~~~~~~~~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~ 1078 (1178)
...+... ..+..+-. |..|...+.+ .|.+||+.+++.+..+... +|..+.|+++|.+++..+.+ .+.+++.+..
T Consensus 102 ~k~i~~~-~~~~~If~-G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~ 175 (443)
T PF04053_consen 102 VKSIKLP-FSVEKIFG-GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLE 175 (443)
T ss_dssp T-----S-S-EEEEE--SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HH
T ss_pred ceEEcCC-cccceEEc-CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecch
Confidence 2233222 12333333 6666666554 8999999999999998743 48999999999999988755 5778776533
Q ss_pred ceEEEEEecccCCcEEEEecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCC
Q 001042 1079 GIKCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERK 1158 (1178)
Q Consensus 1079 ~~~~~~~~~~h~~~i~~is~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~ 1158 (1178)
.... ..-.|....+..++.-...+-+|.+++.+.+|...+ ++. +...|.. ..+..+ ..++.-+...++.+
T Consensus 176 ~~~~-~~~~g~e~~f~~~~E~~~~IkSg~W~~d~fiYtT~~-~lk-Yl~~Ge~----~~i~~l---d~~~yllgy~~~~~ 245 (443)
T PF04053_consen 176 AVAA-IPEEGVEDAFELIHEISERIKSGCWVEDCFIYTTSN-HLK-YLVNGET----GIIAHL---DKPLYLLGYLPKEN 245 (443)
T ss_dssp HHHH-BTTTB-GGGEEEEEEE-S--SEEEEETTEEEEE-TT-EEE-EEETTEE----EEEEE----SS--EEEEEETTTT
T ss_pred hccc-ccccCchhceEEEEEecceeEEEEEEcCEEEEEcCC-eEE-EEEcCCc----ceEEEc---CCceEEEEEEccCC
Confidence 0000 000001111111111122333444444455554433 111 1112211 222222 23566677888888
Q ss_pred EEEEEeCCCcEEEEECC
Q 001042 1159 RICSGGRNGLLRLWEAT 1175 (1178)
Q Consensus 1159 ~Las~s~Dg~V~IWdv~ 1175 (1178)
.+...+.|+.|..+.++
T Consensus 246 ~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 246 RLYLIDRDGNVISYELD 262 (443)
T ss_dssp EEEEE-TT--EEEEE--
T ss_pred EEEEEECCCCEEEEEEC
Confidence 89999999999988765
No 361
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.30 E-value=0.053 Score=63.19 Aligned_cols=257 Identities=12% Similarity=0.120 Sum_probs=131.6
Q ss_pred ecCCCEEEEE---------eCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEE
Q 001042 890 NSDRGKVVSG---------SDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVAT 959 (1178)
Q Consensus 890 s~d~~~l~sg---------s~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~ 959 (1178)
|||+++++.. +..+.+.+||+++++...... ....+....|+ +++.++.. .++.|.+++..++...+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~-~~~~~~~~~~sP~g~~~~~v-~~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTP-PPPKLQDAKWSPDGKYIAFV-RDNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS--EETTBSEEEE-SSSTEEEEE-ETTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcC-CccccccceeecCCCeeEEE-ecCceEEEECCCCCeEEe
Confidence 4677776653 234678999999976644333 36778889999 45555544 578999999888755433
Q ss_pred ecCCC-----------------CCEEEEEEeCCCCEEEEEeCCC-e----------------------------------
Q 001042 960 VGRCS-----------------SAVLCMEYDDSTGILAAGGRDA-V---------------------------------- 987 (1178)
Q Consensus 960 ~~~~~-----------------~~I~~l~~sp~~~~l~sgs~dg-~---------------------------------- 987 (1178)
..... +.-..+.||||++.|+....|. .
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v 158 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV 158 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence 22111 1235688999999988764321 1
Q ss_pred -EEEEECCCCceEE-EE----ecCCccEEEEEEc--CCEEEEEe--CCC---cEEEEEcCCCeeeeEecc-CCCcE---E
Q 001042 988 -ANIWDIRAGRQMH-KF----LGHTKWIRSIRMD--RDTVITGS--DDW---TARMWSISRGTCDAVLAC-HAGPV---Q 1050 (1178)
Q Consensus 988 -I~lwD~~~~~~~~-~~----~~~~~~v~~l~~~--~~~l~sgs--~dg---~I~iwd~~~~~~~~~~~~-h~~~I---~ 1050 (1178)
+.++|+.+++... .. ......+..+.|. ++.++..- .+. .+.++|..++.+...... ..+.| .
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~ 238 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD 238 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence 3344444443321 11 1223345666663 22233322 222 356667766655433322 22222 2
Q ss_pred EEEEe-cCCCE-EEEEeCCCcEEEE--ECCCCceEEEEEecccCCcE---EEEecCCCEEE-EEeCC--CcEEEEEcCCC
Q 001042 1051 CVEYS-SSDRG-IITGSSDGLLRFW--ENDDGGIKCVKNVTIHSSAI---LSINAGDHWLG-IGAAD--NSMSLFHRPQE 1120 (1178)
Q Consensus 1051 ~l~~s-pdg~~-L~sgs~Dg~I~iw--d~~~~~~~~~~~~~~h~~~i---~~is~dg~~La-sgs~D--g~I~iwd~~~~ 1120 (1178)
...+. +++.. +.....||.-+++ +..++ . ...+....-.| ..++++++.|. ++..+ +.-.+|.+...
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~--~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~ 315 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGG--K-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD 315 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSS--E-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEccccc--c-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC
Confidence 45554 55544 4555577765544 55554 2 23444344444 44567766554 44442 34555554311
Q ss_pred ccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEe
Q 001042 1121 RLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGG 1164 (1178)
Q Consensus 1121 ~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s 1164 (1178)
.+.. .+++....+.. ..+.|||||++++-..
T Consensus 316 -------~~~~---~~~LT~~~~~~---~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 316 -------SGGE---PKCLTCEDGDH---YSASFSPDGKYYVDTY 346 (353)
T ss_dssp -------ETTE---EEESSTTSSTT---EEEEE-TTSSEEEEEE
T ss_pred -------CCCC---eEeccCCCCCc---eEEEECCCCCEEEEEE
Confidence 0111 13332222222 7889999999887543
No 362
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.29 E-value=0.061 Score=64.80 Aligned_cols=204 Identities=13% Similarity=0.027 Sum_probs=120.8
Q ss_pred cCCCCEEEEEe-CCCcEEEEcCCCCCceeeEeec-ccccceEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCc
Q 001042 848 REDAGFFISGS-TDCLVKIWDPSLRGSELRATLK-GHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQ 925 (1178)
Q Consensus 848 s~d~~~Lasgs-~Dg~I~iWd~~~~~~~~~~~l~-~h~~~V~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~ 925 (1178)
++||+.+...+ ..+.+.+.|.+ ..+...... +.......++++|+++++.+.+. +.+..+..+......
T Consensus 201 pnDGk~l~~~~ey~~~vSvID~e--tmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNs-------E~G~tl~em~a~e~d 271 (635)
T PRK02888 201 PNDGKDLDDPKKYRSLFTAVDAE--TMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNS-------EEGVTLAEMMAAERD 271 (635)
T ss_pred CCCCCEeecccceeEEEEEEECc--cceEEEEEEeCCCcccceECCCCCEEEEeccCc-------ccCcceeeeccccCc
Confidence 46887664433 35677888865 333333322 22333446789999998887432 223233333221111
Q ss_pred eEEEEEe---------CCCeEEEEeCCCeEEEEeCCC----C-eEEEEecCCCCCEEEEEEeCCCCEEEEEe-CCCeEEE
Q 001042 926 VSCVRML---------SGERVLTASHDGTVKMWDVRT----D-TCVATVGRCSSAVLCMEYDDSTGILAAGG-RDAVANI 990 (1178)
Q Consensus 926 V~~l~~~---------~~~~l~sgs~dg~V~iwd~~~----~-~~~~~~~~~~~~I~~l~~sp~~~~l~sgs-~dg~I~l 990 (1178)
..+.|+ +++.... .++.|.+.|..+ + +.+..+ .-......+.++|||+++++++ .++++.+
T Consensus 272 -~~vvfni~~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yI-PVGKsPHGV~vSPDGkylyVanklS~tVSV 347 (635)
T PRK02888 272 -WVVVFNIARIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYV-PVPKNPHGVNTSPDGKYFIANGKLSPTVTV 347 (635)
T ss_pred -eEEEEchHHHHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEE-ECCCCccceEECCCCCEEEEeCCCCCcEEE
Confidence 222222 4554444 367899999988 3 444444 3456678999999999887766 4889999
Q ss_pred EECCCCce------------EEEEecCCccEEEEEEcCC--EEEEEeCCCcEEEEEcCC----------CeeeeEeccCC
Q 001042 991 WDIRAGRQ------------MHKFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISR----------GTCDAVLACHA 1046 (1178)
Q Consensus 991 wD~~~~~~------------~~~~~~~~~~v~~l~~~~~--~l~sgs~dg~I~iwd~~~----------~~~~~~~~~h~ 1046 (1178)
+|+.+.+. +.+..- .......+|+++ ...+-..|..|..||+.+ ...+..+.-|-
T Consensus 348 IDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y 426 (635)
T PRK02888 348 IDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHY 426 (635)
T ss_pred EEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCC
Confidence 99987553 222222 223334566544 677777899999999876 23344444343
Q ss_pred CcEE-----EEEEecCCCEEEEEe
Q 001042 1047 GPVQ-----CVEYSSSDRGIITGS 1065 (1178)
Q Consensus 1047 ~~I~-----~l~~spdg~~L~sgs 1065 (1178)
.+.. +=.-.++|++|++..
T Consensus 427 ~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 427 QPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred ccceeeecCCCcCCCCCCEEEEcc
Confidence 3322 122367899998875
No 363
>PHA02713 hypothetical protein; Provisional
Probab=97.28 E-value=0.017 Score=71.30 Aligned_cols=216 Identities=10% Similarity=0.070 Sum_probs=119.0
Q ss_pred cEEEEECCCCcEEE--EecCCCCceEEEEEeCCCeEEEEeCC------CeEEEEeCCCCeEEEEecCCCCCEEEEEEeCC
Q 001042 904 SVLVWDKQTSQLLE--ELKGHDAQVSCVRMLSGERVLTASHD------GTVKMWDVRTDTCVATVGRCSSAVLCMEYDDS 975 (1178)
Q Consensus 904 ~I~iwd~~t~~~~~--~l~~h~~~V~~l~~~~~~~l~sgs~d------g~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~ 975 (1178)
.+..||..+++... .+.... .-.+++..++..+++||.+ ..+..||..++.....-.-....-......-+
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r-~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~ 351 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHI-INYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVID 351 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccc-cceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEEC
Confidence 46667776654322 111111 1123444477777788753 35778898877542211111111111122236
Q ss_pred CCEEEEEeCCC-----eEEEEECCCCceEE--EEecCCccEEEEEEcCCEEEEEeCCC----------------------
Q 001042 976 TGILAAGGRDA-----VANIWDIRAGRQMH--KFLGHTKWIRSIRMDRDTVITGSDDW---------------------- 1026 (1178)
Q Consensus 976 ~~~l~sgs~dg-----~I~lwD~~~~~~~~--~~~~~~~~v~~l~~~~~~l~sgs~dg---------------------- 1026 (1178)
|+..+.||.++ .+..||..+.+-.. .+.........++.++...+.|+.++
T Consensus 352 g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (557)
T PHA02713 352 DTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSS 431 (557)
T ss_pred CEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccccccccccccccccccccccc
Confidence 77778888654 47889988764322 22222222334455777777776542
Q ss_pred -cEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCC------CcEEEEECCC-CceEEEEEecccCCcEEEEec
Q 001042 1027 -TARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSD------GLLRFWENDD-GGIKCVKNVTIHSSAILSINA 1098 (1178)
Q Consensus 1027 -~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~D------g~I~iwd~~~-~~~~~~~~~~~h~~~i~~is~ 1098 (1178)
.+..||..+++....-.-.......-+..-+|+..+.||.+ ..+..||..+ .++..+..+...........-
T Consensus 432 ~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~ 511 (557)
T PHA02713 432 NKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH 511 (557)
T ss_pred ceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE
Confidence 47778877764422111111111111223356777777654 2467899998 677777666655555555567
Q ss_pred CCCEEEEEeCCC--cEEEEEcCCC
Q 001042 1099 GDHWLGIGAADN--SMSLFHRPQE 1120 (1178)
Q Consensus 1099 dg~~Lasgs~Dg--~I~iwd~~~~ 1120 (1178)
+|+..++|+.|| ++..||..+.
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred CCEEEEEeeecceeehhhcCcccc
Confidence 899999999888 6777777643
No 364
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.25 E-value=0.68 Score=54.82 Aligned_cols=110 Identities=13% Similarity=0.145 Sum_probs=73.6
Q ss_pred cCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEEecCCCEEEEEeCCCcEEEEEcCCCccc
Q 001042 1044 CHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRPQERLG 1123 (1178)
Q Consensus 1044 ~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~Lasgs~Dg~I~iwd~~~~~~~ 1123 (1178)
...+.+.+++++|+...++.|+.||.|.+||...+... ..-..-.....+++|+|..+++|+..|.+.+||+.-....
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~ 334 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIK 334 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccc
Confidence 46778999999999999999999999999999877322 2222233445677999999999999999999998644321
Q ss_pred ccc--CCCCCccceeEeeccCCCcccEEEEEEcCC
Q 001042 1124 GFS--GTGSKMSGWQLYRTPQKTVAVVRCIASDLE 1156 (1178)
Q Consensus 1124 ~~~--~~g~~~~~~~~~~~~~~h~~~V~~lafspd 1156 (1178)
.-. .+..+....++- ..-.+...+..+.|++.
T Consensus 335 ~qLlsEd~~P~~~L~Ls-~yf~~~~~L~~iqW~~~ 368 (545)
T PF11768_consen 335 MQLLSEDATPKSTLQLS-KYFRVSSSLVHIQWAPA 368 (545)
T ss_pred eeeccccCCCccEEeee-hhccCcchhheeEeccC
Confidence 111 111111111211 22245556777888744
No 365
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.25 E-value=0.091 Score=62.27 Aligned_cols=140 Identities=8% Similarity=0.043 Sum_probs=77.9
Q ss_pred CCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecC-CccEEEE
Q 001042 934 GERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGH-TKWIRSI 1012 (1178)
Q Consensus 934 ~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~-~~~v~~l 1012 (1178)
....+....++.+.+.+-...+. + ...+++..|+.||+|+++|.-..+|.+.+.+..-.+....+... ......+
T Consensus 190 ~~~~i~~~~g~~i~~i~~~~~~~---i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~ 265 (410)
T PF04841_consen 190 RVVEILLANGETIYIIDENSFKQ---I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQM 265 (410)
T ss_pred cceEEEEecCCEEEEEEcccccc---c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEE
Confidence 33344444455555443322111 1 22468999999999999999999999999987666666665544 3456677
Q ss_pred EEcCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCc
Q 001042 1013 RMDRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSA 1092 (1178)
Q Consensus 1013 ~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~ 1092 (1178)
.|.|+-.+....+..+.+... .... +.|.-++..++..-.|| +||..-+.. ..+..++.....
T Consensus 266 ~WCG~dav~l~~~~~l~lvg~-----------~~~~---~~~~~~~~~~l~~E~DG-~riit~~~~--~~l~~Vp~~~~~ 328 (410)
T PF04841_consen 266 AWCGNDAVVLSWEDELLLVGP-----------DGDS---ISFWYDGPVILVSEIDG-VRIITSTSH--EFLQRVPDSTEN 328 (410)
T ss_pred EEECCCcEEEEeCCEEEEECC-----------CCCc---eEEeccCceEEeccCCc-eEEEeCCce--EEEEECCHHHHH
Confidence 776652211111333443331 1111 23333444455555676 788754443 555555544444
Q ss_pred EE
Q 001042 1093 IL 1094 (1178)
Q Consensus 1093 i~ 1094 (1178)
|.
T Consensus 329 if 330 (410)
T PF04841_consen 329 IF 330 (410)
T ss_pred Hh
Confidence 43
No 366
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.22 E-value=0.64 Score=53.19 Aligned_cols=289 Identities=11% Similarity=0.082 Sum_probs=132.1
Q ss_pred ceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeC-CCcEEEEcCCCCCceeeEeeccc-c-cceEEEecCCCE
Q 001042 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGST-DCLVKIWDPSLRGSELRATLKGH-T-RTVRAINSDRGK 895 (1178)
Q Consensus 819 ~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~-Dg~I~iWd~~~~~~~~~~~l~~h-~-~~V~~~s~d~~~ 895 (1178)
.+..|..+.+.-..+-|. --+|.+||+.|+.++. ||.-.+|-++..+.+..+...+. . ..-..++++++.
T Consensus 22 ~VtrLT~~~~~~h~~YF~-------~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~ 94 (386)
T PF14583_consen 22 RVTRLTPPDGHSHRLYFY-------QNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRA 94 (386)
T ss_dssp EEEE-S-TTS-EE---TT-------S--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSE
T ss_pred eEEEecCCCCcccceeec-------CCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCe
Confidence 455555444433334443 2356689977666554 66655555544455554433322 1 112356888888
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe--CCCeEEEEeC-----------------------CCeEEEEe
Q 001042 896 VVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML--SGERVLTASH-----------------------DGTVKMWD 950 (1178)
Q Consensus 896 l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~--~~~~l~sgs~-----------------------dg~V~iwd 950 (1178)
++-...+..++-.|+++.+....+......+-...|. .+...++|.. ...|.-.|
T Consensus 95 ~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~id 174 (386)
T PF14583_consen 95 LYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTID 174 (386)
T ss_dssp EEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEE
T ss_pred EEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEE
Confidence 8776666789999999988766666666666555554 2333333321 23466678
Q ss_pred CCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCC----Ce-EEEEECCC-CceEEEEecCCc-cEEEE-EE--cCCEEE
Q 001042 951 VRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRD----AV-ANIWDIRA-GRQMHKFLGHTK-WIRSI-RM--DRDTVI 1020 (1178)
Q Consensus 951 ~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~d----g~-I~lwD~~~-~~~~~~~~~~~~-~v~~l-~~--~~~~l~ 1020 (1178)
+.+|+....+ .....+..+.|+|....+++=+.. .. -+||-+++ +...+.+..+.. .+..- -| +|..+.
T Consensus 175 l~tG~~~~v~-~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~ 253 (386)
T PF14583_consen 175 LKTGERKVVF-EDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIW 253 (386)
T ss_dssp TTT--EEEEE-EESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EE
T ss_pred CCCCceeEEE-ecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEE
Confidence 8887765444 456778899999955444443322 21 24454432 333333333222 22222 22 444322
Q ss_pred E-E----eCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCC----------------cEEEEECCCCc
Q 001042 1021 T-G----SDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDG----------------LLRFWENDDGG 1079 (1178)
Q Consensus 1021 s-g----s~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg----------------~I~iwd~~~~~ 1079 (1178)
- + +.+..|.-+|..+++...... ..+......++||++++-=+.|. .|+++++..+.
T Consensus 254 y~~~~~~~~~~~i~~~d~~t~~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~ 331 (386)
T PF14583_consen 254 YDSYTPGGQDFWIAGYDPDTGERRRLME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGR 331 (386)
T ss_dssp EEEEETTT--EEEEEE-TTT--EEEEEE--E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTE
T ss_pred EEeecCCCCceEEEeeCCCCCCceEEEe--CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCc
Confidence 2 1 123356667777775533222 22344566678888776544432 46678887764
Q ss_pred eEEEEEe-------ccc---CCcEEEEecCCCEEEEEe-CCCcEEEEEc
Q 001042 1080 IKCVKNV-------TIH---SSAILSINAGDHWLGIGA-ADNSMSLFHR 1117 (1178)
Q Consensus 1080 ~~~~~~~-------~~h---~~~i~~is~dg~~Lasgs-~Dg~I~iwd~ 1117 (1178)
...+... .++ .-+-.+++|||++++-.| ..|...||-+
T Consensus 332 ~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 332 FRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp EEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred eeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 3322221 111 123357799999877654 4666666644
No 367
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.20 E-value=0.26 Score=55.18 Aligned_cols=224 Identities=14% Similarity=0.163 Sum_probs=128.9
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEE--ecCCCEEEEEeCCCcEEEEECCCCcEEEEe-------
Q 001042 849 EDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQLLEEL------- 919 (1178)
Q Consensus 849 ~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~--s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l------- 919 (1178)
..++.|+.|+.+| +.+++.. ........... ..|..+ -++-+.+++-+ |+.+.++++.+-.....-
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~-~~~~~~~i~~~--~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLS-DPSKPTRILKL--SSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred cCCCEEEEEECCC-EEEEEec-CCccceeEeec--ceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccc
Confidence 5688999999999 8999873 22222222222 226644 45556666554 499999998765433311
Q ss_pred -------cCCCCceEEEE---EeCCCeEEEEeCCCeEEEEeCCCC-----eEEEEecCCCCCEEEEEEeCCCCEEEEEeC
Q 001042 920 -------KGHDAQVSCVR---MLSGERVLTASHDGTVKMWDVRTD-----TCVATVGRCSSAVLCMEYDDSTGILAAGGR 984 (1178)
Q Consensus 920 -------~~h~~~V~~l~---~~~~~~l~sgs~dg~V~iwd~~~~-----~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~ 984 (1178)
......+...+ -..+...++.....+|.+|..... +..+.+. ....+.+++|. ++.++.|..
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~ 156 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTS 156 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeC
Confidence 11233444444 113444555555568888877653 3444443 34778899998 566777775
Q ss_pred CCeEEEEECCCCceEEEEec------------CCccEEEEEEcCCEEEEEeCCCcEEEEEcCCCeeee--EeccCCCcEE
Q 001042 985 DAVANIWDIRAGRQMHKFLG------------HTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDA--VLACHAGPVQ 1050 (1178)
Q Consensus 985 dg~I~lwD~~~~~~~~~~~~------------~~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~--~~~~h~~~I~ 1050 (1178)
++ ..+.|+.++....-+.. ...++..+..+.+.++.+.. ..-.+.|. .|+..+ .+. -.....
T Consensus 157 ~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~~-~~g~fv~~-~G~~~r~~~i~-W~~~p~ 232 (275)
T PF00780_consen 157 KG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCYD-NIGVFVNK-NGEPSRKSTIQ-WSSAPQ 232 (275)
T ss_pred Cc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEec-ceEEEEcC-CCCcCcccEEE-cCCchh
Confidence 54 78889987765433311 11244555555443333333 23333443 444332 222 233556
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEeccc
Q 001042 1051 CVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIH 1089 (1178)
Q Consensus 1051 ~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h 1089 (1178)
++++. ..+|++.+. +.|.+|++.++ ..++.+...
T Consensus 233 ~~~~~--~pyli~~~~-~~iEV~~~~~~--~lvQ~i~~~ 266 (275)
T PF00780_consen 233 SVAYS--SPYLIAFSS-NSIEVRSLETG--ELVQTIPLP 266 (275)
T ss_pred EEEEE--CCEEEEECC-CEEEEEECcCC--cEEEEEECC
Confidence 67664 567777765 55999999999 556665544
No 368
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.19 E-value=0.082 Score=60.71 Aligned_cols=218 Identities=9% Similarity=0.082 Sum_probs=123.4
Q ss_pred CeEEEEeCCCCeEEEEecCC-CCCEEEEEE---eCC----CCEEEEEeC---------C-CeEEEEECCCC----ceEEE
Q 001042 944 GTVKMWDVRTDTCVATVGRC-SSAVLCMEY---DDS----TGILAAGGR---------D-AVANIWDIRAG----RQMHK 1001 (1178)
Q Consensus 944 g~V~iwd~~~~~~~~~~~~~-~~~I~~l~~---sp~----~~~l~sgs~---------d-g~I~lwD~~~~----~~~~~ 1001 (1178)
+.|++.|..+.+.+..+.-. ...+.+++. ..+ ..++++|+. . |.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 46788888888776665432 334444443 322 467777763 2 89999999884 22222
Q ss_pred E--ecCCccEEEEEEcCCEEEEEeCCCcEEEEEcCCCe-eeeEec-cCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 001042 1002 F--LGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGT-CDAVLA-CHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDD 1077 (1178)
Q Consensus 1002 ~--~~~~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~-~~~~~~-~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~ 1077 (1178)
. ....++|++++.-++.++++. ++.|.+|++...+ ....-. .....++++... +++++.|.....+.++..+.
T Consensus 82 i~~~~~~g~V~ai~~~~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~ 158 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSFNGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDE 158 (321)
T ss_dssp EEEEEESS-EEEEEEETTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEET
T ss_pred EEEEeecCcceEhhhhCCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEc
Confidence 2 245788999988777755554 5789999998877 333222 122355566554 67999999888888875543
Q ss_pred C--ceEEEEEecccCCcEEEEe--cCCCEEEEEeCCCcEEEEEcCCCccccccCCCC-CccceeEeeccCCCcccEEEE-
Q 001042 1078 G--GIKCVKNVTIHSSAILSIN--AGDHWLGIGAADNSMSLFHRPQERLGGFSGTGS-KMSGWQLYRTPQKTVAVVRCI- 1151 (1178)
Q Consensus 1078 ~--~~~~~~~~~~h~~~i~~is--~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~-~~~~~~~~~~~~~h~~~V~~l- 1151 (1178)
. +...+.. ......++++. .+++.++++..+|.+.++........ ...+. .+ .....+ .....|+++
T Consensus 159 ~~~~l~~va~-d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~--~~~~~~~L---~~~~~f-~lg~~v~~~~ 231 (321)
T PF03178_consen 159 ENNKLILVAR-DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPN--SRDGDPKL---ERISSF-HLGDIVNSFR 231 (321)
T ss_dssp TTE-EEEEEE-ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SS--TTTTTTBE---EEEEEE-E-SS-EEEEE
T ss_pred cCCEEEEEEe-cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcc--cccccccc---eeEEEE-ECCCccceEE
Confidence 2 2222222 22344455553 36679999999999999998632110 01111 11 122221 223456666
Q ss_pred --EEcCC--C------CEEEEEeCCCcEEE
Q 001042 1152 --ASDLE--R------KRICSGGRNGLLRL 1171 (1178)
Q Consensus 1152 --afspd--g------~~Las~s~Dg~V~I 1171 (1178)
++.|. + ..++-++.+|.|-+
T Consensus 232 ~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 232 RGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp E--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred EEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 44451 2 24777888998874
No 369
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.17 E-value=0.025 Score=69.66 Aligned_cols=217 Identities=12% Similarity=0.149 Sum_probs=126.4
Q ss_pred CeEEEEeCCCCeEEEEecCCC-CCEEEEEEeCCCCEEEEEeCC------CeEEEEECCCCceEE--EEecCCccEEEEEE
Q 001042 944 GTVKMWDVRTDTCVATVGRCS-SAVLCMEYDDSTGILAAGGRD------AVANIWDIRAGRQMH--KFLGHTKWIRSIRM 1014 (1178)
Q Consensus 944 g~V~iwd~~~~~~~~~~~~~~-~~I~~l~~sp~~~~l~sgs~d------g~I~lwD~~~~~~~~--~~~~~~~~v~~l~~ 1014 (1178)
..+..+|..++.....-.-.. ..-.+++.. ++...++||.| ..+..||.++++-.. .+............
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l 379 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL 379 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE
Confidence 456777877764333221111 122333333 45778888888 357788888776433 22233334445556
Q ss_pred cCCEEEEEeCCCc-----EEEEEcCCCeeeeEeccCCCcEEEE-EEecCCCEEEEEeCCC------cEEEEECCCCceEE
Q 001042 1015 DRDTVITGSDDWT-----ARMWSISRGTCDAVLACHAGPVQCV-EYSSSDRGIITGSSDG------LLRFWENDDGGIKC 1082 (1178)
Q Consensus 1015 ~~~~l~sgs~dg~-----I~iwd~~~~~~~~~~~~h~~~I~~l-~~spdg~~L~sgs~Dg------~I~iwd~~~~~~~~ 1082 (1178)
++...++|+.||. +-.||..+.+.-..-. ......+. ...-+|...++||.++ ++..||..++.+..
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~ 458 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTL 458 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceee
Confidence 7888899998875 6678876654322211 11111221 2233577788888554 47789988887766
Q ss_pred EEEecccCCcEEEEecCCCEEEEEeCCCc-----EEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCC
Q 001042 1083 VKNVTIHSSAILSINAGDHWLGIGAADNS-----MSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLER 1157 (1178)
Q Consensus 1083 ~~~~~~h~~~i~~is~dg~~Lasgs~Dg~-----I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg 1157 (1178)
...+...........-++.+.+.||.|+. |..||..+. .|..+.........+..++ -++
T Consensus 459 ~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~-------------~W~~v~~m~~~rs~~g~~~--~~~ 523 (571)
T KOG4441|consen 459 IAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETN-------------QWTMVAPMTSPRSAVGVVV--LGG 523 (571)
T ss_pred cCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCC-------------ceeEcccCccccccccEEE--ECC
Confidence 66555444444444678888899988873 566666532 4555543333333332222 357
Q ss_pred CEEEEEeCCC-----cEEEEECCCC
Q 001042 1158 KRICSGGRNG-----LLRLWEATIN 1177 (1178)
Q Consensus 1158 ~~Las~s~Dg-----~V~IWdv~tg 1177 (1178)
+..+.||.|| +|..||..++
T Consensus 524 ~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 524 KLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred EEEEEecccCccccceeEEcCCCCC
Confidence 7788888886 5777877765
No 370
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.13 E-value=0.18 Score=56.41 Aligned_cols=220 Identities=15% Similarity=0.144 Sum_probs=124.3
Q ss_pred ecCCCEEEEEeCCCcEEEEECCC-CcEEEEecCCCCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEE---------
Q 001042 890 NSDRGKVVSGSDDQSVLVWDKQT-SQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVAT--------- 959 (1178)
Q Consensus 890 s~d~~~l~sgs~dg~I~iwd~~t-~~~~~~l~~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~--------- 959 (1178)
...++.|+.|+.+| +.+++... .+...... ...|..+...+.-.++..-.|+.+.++++..-.....
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEcCCccEEEEchhhcccccccccccccc
Confidence 45678999999998 89999833 33333222 2338888887543344444569999999876433321
Q ss_pred -----ecCCCCCEEEEE--EeCCCCEEEEEeCCCeEEEEECCCC-----ceEEEEecCCccEEEEEEcCCEEEEEeCCCc
Q 001042 960 -----VGRCSSAVLCME--YDDSTGILAAGGRDAVANIWDIRAG-----RQMHKFLGHTKWIRSIRMDRDTVITGSDDWT 1027 (1178)
Q Consensus 960 -----~~~~~~~I~~l~--~sp~~~~l~sgs~dg~I~lwD~~~~-----~~~~~~~~~~~~v~~l~~~~~~l~sgs~dg~ 1027 (1178)
.......+...+ -...+...++......|.+|..... +..+++ .-...+.+++|.++.++.|..++
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~-~lp~~~~~i~~~~~~i~v~~~~~- 158 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEI-SLPDPPSSIAFLGNKICVGTSKG- 158 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEE-EcCCCcEEEEEeCCEEEEEeCCc-
Confidence 011223344444 1223333444444558888887653 344444 34478889999999999998664
Q ss_pred EEEEEcCCCeeeeEeccC------------CCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEE
Q 001042 1028 ARMWSISRGTCDAVLACH------------AGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILS 1095 (1178)
Q Consensus 1028 I~iwd~~~~~~~~~~~~h------------~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~ 1095 (1178)
..+.|+.++.....+... ..++..+.. +++.+|++. |..-.+.|. .|+......+.-.. ...+
T Consensus 159 f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W~~-~p~~ 233 (275)
T PF00780_consen 159 FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKSTIQWSS-APQS 233 (275)
T ss_pred eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccEEEcCC-chhE
Confidence 788899877654433211 123333333 345666653 333334444 34222212222222 2234
Q ss_pred EecCCCEEEEEeCCCcEEEEEcCCC
Q 001042 1096 INAGDHWLGIGAADNSMSLFHRPQE 1120 (1178)
Q Consensus 1096 is~dg~~Lasgs~Dg~I~iwd~~~~ 1120 (1178)
+.-...+|++.+. +.|.||++.++
T Consensus 234 ~~~~~pyli~~~~-~~iEV~~~~~~ 257 (275)
T PF00780_consen 234 VAYSSPYLIAFSS-NSIEVRSLETG 257 (275)
T ss_pred EEEECCEEEEECC-CEEEEEECcCC
Confidence 4345567776655 55999999854
No 371
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.12 E-value=0.29 Score=56.16 Aligned_cols=209 Identities=14% Similarity=0.246 Sum_probs=129.3
Q ss_pred CcEEEEECCCCcEEEEecC-CCCceEEEEEe---C-----CCeEEEEeC----------CCeEEEEeCCCC----eEEEE
Q 001042 903 QSVLVWDKQTSQLLEELKG-HDAQVSCVRML---S-----GERVLTASH----------DGTVKMWDVRTD----TCVAT 959 (1178)
Q Consensus 903 g~I~iwd~~t~~~~~~l~~-h~~~V~~l~~~---~-----~~~l~sgs~----------dg~V~iwd~~~~----~~~~~ 959 (1178)
+.|++.|..+.+.+..+.- ....+.+++.. + ..++++|+. .|.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 4688899888887766542 23445555433 2 356666643 299999999884 12222
Q ss_pred e--cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-eEEE-EecCCccEEEEEEcCCEEEEEeCCCcEEEEEcCC
Q 001042 960 V--GRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGR-QMHK-FLGHTKWIRSIRMDRDTVITGSDDWTARMWSISR 1035 (1178)
Q Consensus 960 ~--~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~-~~~~-~~~~~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~ 1035 (1178)
+ ....++|++++-- ++. ++++. ++.|.+|++...+ .... .......+.++...++++++|.....+.++..+.
T Consensus 82 i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~ 158 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDE 158 (321)
T ss_dssp EEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEET
T ss_pred EEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEc
Confidence 1 2346789988877 343 44443 5789999998887 4333 2223448889998899999999999998885543
Q ss_pred -CeeeeEec--cCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCC-------C--ceEEEEEecccCCcEEEE---e--c
Q 001042 1036 -GTCDAVLA--CHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDD-------G--GIKCVKNVTIHSSAILSI---N--A 1098 (1178)
Q Consensus 1036 -~~~~~~~~--~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~-------~--~~~~~~~~~~h~~~i~~i---s--~ 1098 (1178)
+..+..+. ....+++++.+-++++.++++..+|.+.++.... + .......+. ....|.++ + +
T Consensus 159 ~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~ 237 (321)
T PF03178_consen 159 ENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLIP 237 (321)
T ss_dssp TTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS-
T ss_pred cCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEeee
Confidence 33233332 2345688999987777999999999999998763 1 222233332 23445555 2 3
Q ss_pred --CC------CEEEEEeCCCcEEEE
Q 001042 1099 --GD------HWLGIGAADNSMSLF 1115 (1178)
Q Consensus 1099 --dg------~~Lasgs~Dg~I~iw 1115 (1178)
.+ ..++.++.+|.|...
T Consensus 238 ~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 238 RSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp -SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred cCCCCcccccceEEEEecCCEEEEE
Confidence 12 247888899998844
No 372
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.05 E-value=0.046 Score=67.36 Aligned_cols=213 Identities=16% Similarity=0.180 Sum_probs=127.5
Q ss_pred CcEEEEECCCCcEEEEec-CCCCceEEEEEeCCCeEEEEeCC------CeEEEEeCCCCeEEEEecCCCCCEEEEEE-eC
Q 001042 903 QSVLVWDKQTSQLLEELK-GHDAQVSCVRMLSGERVLTASHD------GTVKMWDVRTDTCVATVGRCSSAVLCMEY-DD 974 (1178)
Q Consensus 903 g~I~iwd~~t~~~~~~l~-~h~~~V~~l~~~~~~~l~sgs~d------g~V~iwd~~~~~~~~~~~~~~~~I~~l~~-sp 974 (1178)
..+..+|..+++....-. .+...-.+++..++...++||.| .++..||..+++-.. .......-..... .-
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~~~R~~~~v~~l 379 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMNTKRSDFGVAVL 379 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceec-cCCccCccccceeEEE
Confidence 457777777764432211 12333556666688889999998 357888888877433 2111111111111 22
Q ss_pred CCCEEEEEeCCCe-----EEEEECCCCceE--EEEecCCccEEEEEEcCCEEEEEeCCC------cEEEEEcCCCeeeeE
Q 001042 975 STGILAAGGRDAV-----ANIWDIRAGRQM--HKFLGHTKWIRSIRMDRDTVITGSDDW------TARMWSISRGTCDAV 1041 (1178)
Q Consensus 975 ~~~~l~sgs~dg~-----I~lwD~~~~~~~--~~~~~~~~~v~~l~~~~~~l~sgs~dg------~I~iwd~~~~~~~~~ 1041 (1178)
+|...++||.||. +..||..+.+-. ..+...........+++...++|+.++ ++..||..+++....
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~ 459 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLI 459 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeec
Confidence 6788889998864 777887765432 222223334445566788888887554 467888877654322
Q ss_pred --eccCCCcEEEEEEecCCCEEEEEeCCCc-----EEEEECCCCceEEEEEecccCCcEEEEecCCCEEEEEeCCCc---
Q 001042 1042 --LACHAGPVQCVEYSSSDRGIITGSSDGL-----LRFWENDDGGIKCVKNVTIHSSAILSINAGDHWLGIGAADNS--- 1111 (1178)
Q Consensus 1042 --~~~h~~~I~~l~~spdg~~L~sgs~Dg~-----I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~Lasgs~Dg~--- 1111 (1178)
+..-..... ++ .-++...+.||.|+. |..||..+.++..+.........+-...-++...++|+.||.
T Consensus 460 ~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l 537 (571)
T KOG4441|consen 460 APMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNNNL 537 (571)
T ss_pred CCcccccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccCcccc
Confidence 221111122 22 235777888887763 778999888777775555555555555677888888888764
Q ss_pred --EEEEEcC
Q 001042 1112 --MSLFHRP 1118 (1178)
Q Consensus 1112 --I~iwd~~ 1118 (1178)
|..||..
T Consensus 538 ~~ve~ydp~ 546 (571)
T KOG4441|consen 538 NTVECYDPE 546 (571)
T ss_pred ceeEEcCCC
Confidence 5566554
No 373
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.00 E-value=0.43 Score=56.95 Aligned_cols=234 Identities=12% Similarity=0.050 Sum_probs=120.8
Q ss_pred EEEecCCCCcccccc----cc---eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceeccc
Q 001042 773 QSMFSREASSRSHSF----SR---VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLV 845 (1178)
Q Consensus 773 ~~aFSpdg~~las~~----~d---I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~ 845 (1178)
..++||||+++|.+- ++ +++.|+++++. ....+.+.. -..+.|.
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~------------------l~d~i~~~~--~~~~~W~--------- 178 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKF------------------LPDGIENPK--FSSVSWS--------- 178 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEE------------------EEEEEEEEE--SEEEEEC---------
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcC------------------cCCcccccc--cceEEEe---------
Confidence 458999999988653 33 99999998762 111222211 1227776
Q ss_pred cccCCCCEEEEEeCCC-----------cEEEEcCCCCCceeeEeecccccce--E--EEecCCCEEEEEeC---C-CcEE
Q 001042 846 GDREDAGFFISGSTDC-----------LVKIWDPSLRGSELRATLKGHTRTV--R--AINSDRGKVVSGSD---D-QSVL 906 (1178)
Q Consensus 846 ~~s~d~~~Lasgs~Dg-----------~I~iWd~~~~~~~~~~~l~~h~~~V--~--~~s~d~~~l~sgs~---d-g~I~ 906 (1178)
+|++.++....+. .|+.|++.....+-...+....... . ..+.|+++++..+. + ..+.
T Consensus 179 ---~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~ 255 (414)
T PF02897_consen 179 ---DDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVY 255 (414)
T ss_dssp ---TTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEE
T ss_pred ---CCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEE
Confidence 7777766554332 3788887644444234454444332 2 45899999775432 2 3577
Q ss_pred EEECCCC-----cEEEEecCCCCceEEEEEeCCCeEEEEe---CCCeEEEEeCCCCeE---EEEecCCCCCEEEEEEeCC
Q 001042 907 VWDKQTS-----QLLEELKGHDAQVSCVRMLSGERVLTAS---HDGTVKMWDVRTDTC---VATVGRCSSAVLCMEYDDS 975 (1178)
Q Consensus 907 iwd~~t~-----~~~~~l~~h~~~V~~l~~~~~~~l~sgs---~dg~V~iwd~~~~~~---~~~~~~~~~~I~~l~~sp~ 975 (1178)
+.++..+ ..........+....+....+..++... .++.|...++.+... ...+..+...+.-..+...
T Consensus 256 ~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~ 335 (414)
T PF02897_consen 256 LLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF 335 (414)
T ss_dssp EEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE
T ss_pred EEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE
Confidence 8888764 3333333333333444444444444432 346777788877652 3244444443333333333
Q ss_pred CCEEEEE-eCCC--eEEEEECCCCceEEEEec-CCccEEEEEEc--CC-EEE-EEe--CCCcEEEEEcCCCee
Q 001042 976 TGILAAG-GRDA--VANIWDIRAGRQMHKFLG-HTKWIRSIRMD--RD-TVI-TGS--DDWTARMWSISRGTC 1038 (1178)
Q Consensus 976 ~~~l~sg-s~dg--~I~lwD~~~~~~~~~~~~-~~~~v~~l~~~--~~-~l~-sgs--~dg~I~iwd~~~~~~ 1038 (1178)
+++|+.. ..++ .|+++|+..+........ ..+.|..+..+ .+ ..+ ..| .-+++..||+.+++.
T Consensus 336 ~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 336 KDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp TTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred CCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 4444444 3443 588899884444444333 33345555432 22 222 222 235677788887765
No 374
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.88 E-value=0.057 Score=50.17 Aligned_cols=102 Identities=23% Similarity=0.359 Sum_probs=69.3
Q ss_pred eEEEEeeeccceeccccccCC-CCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEE-ecCCCEEEEEeCCCcEEE
Q 001042 830 ITALHCVTKREVWDLVGDRED-AGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI-NSDRGKVVSGSDDQSVLV 907 (1178)
Q Consensus 830 V~~l~fs~~~~~~~~~~~s~d-~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~-s~d~~~l~sgs~dg~I~i 907 (1178)
|++++++ .++.| .+.|++||.|..||+|+ +.+.+.....+ ..|+++ .-.+..++.+..+|+|-+
T Consensus 2 V~al~~~---------d~d~dg~~eLlvGs~D~~IRvf~----~~e~~~Ei~e~-~~v~~L~~~~~~~F~Y~l~NGTVGv 67 (111)
T PF14783_consen 2 VTALCLF---------DFDGDGENELLVGSDDFEIRVFK----GDEIVAEITET-DKVTSLCSLGGGRFAYALANGTVGV 67 (111)
T ss_pred eeEEEEE---------ecCCCCcceEEEecCCcEEEEEe----CCcEEEEEecc-cceEEEEEcCCCEEEEEecCCEEEE
Confidence 6777775 23333 36899999999999998 33455555533 345554 445578999999999999
Q ss_pred EECCCCcEEEEecCCCCceEEEEEeCC-----CeEEEEeCCCeEEE
Q 001042 908 WDKQTSQLLEELKGHDAQVSCVRMLSG-----ERVLTASHDGTVKM 948 (1178)
Q Consensus 908 wd~~t~~~~~~l~~h~~~V~~l~~~~~-----~~l~sgs~dg~V~i 948 (1178)
|+- .+.+...+... .++++++.+- ..|++|-.+|.|-+
T Consensus 68 Y~~--~~RlWRiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 68 YDR--SQRLWRIKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred EeC--cceeeeeccCC-CeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 975 34455666433 3677776632 25889988988743
No 375
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.85 E-value=0.021 Score=71.15 Aligned_cols=140 Identities=14% Similarity=0.196 Sum_probs=99.6
Q ss_pred CCCEEEEE-eCCCeEEEEECCCCceEEEEecCCcc-EEEEEEc-------CCEEEEEeCCCcEEEEEcCCCe--eeeE-e
Q 001042 975 STGILAAG-GRDAVANIWDIRAGRQMHKFLGHTKW-IRSIRMD-------RDTVITGSDDWTARMWSISRGT--CDAV-L 1042 (1178)
Q Consensus 975 ~~~~l~sg-s~dg~I~lwD~~~~~~~~~~~~~~~~-v~~l~~~-------~~~l~sgs~dg~I~iwd~~~~~--~~~~-~ 1042 (1178)
+.++|+.. .....++-.|+..|+.+..+..+... |..++.+ +...+.|-.+..+..||.+-.. .+.. .
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 33444433 34578999999999999999887765 7777663 3467888889999999998642 2211 1
Q ss_pred c--cCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE--ecCCCEEEEEeCCCcEEEEEcC
Q 001042 1043 A--CHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRP 1118 (1178)
Q Consensus 1043 ~--~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~dg~~Lasgs~Dg~I~iwd~~ 1118 (1178)
. ......+|++-+.+| +||.|+.+|.||+||-. |. .....+++-..+|..+ +.||+|+++.+ +..+.+++..
T Consensus 572 k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~-g~-~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRL-GK-RAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDTL 647 (794)
T ss_pred cccccCCCceEEEecCCc-eEEEEeCCCcEEeeccc-ch-hhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence 1 134467788877766 69999999999999943 32 4445566667888776 79999988665 4677777763
No 376
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.74 E-value=0.024 Score=70.71 Aligned_cols=133 Identities=12% Similarity=0.115 Sum_probs=94.8
Q ss_pred CCCeEEEEeCCCCeEEEEecCCCCC-EEEEEEeC-----CCCEEEEEeCCCeEEEEECCCCc--eEEE-E--ecCCccEE
Q 001042 942 HDGTVKMWDVRTDTCVATVGRCSSA-VLCMEYDD-----STGILAAGGRDAVANIWDIRAGR--QMHK-F--LGHTKWIR 1010 (1178)
Q Consensus 942 ~dg~V~iwd~~~~~~~~~~~~~~~~-I~~l~~sp-----~~~~l~sgs~dg~I~lwD~~~~~--~~~~-~--~~~~~~v~ 1010 (1178)
....|+-.|+..|+.+..+..+... |..++-+. .....++|-.++.+..||.|-.. .+.. . ........
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs 581 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS 581 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence 4577888999999999988776544 55554322 13345678888999999998632 2211 1 12344677
Q ss_pred EEEEcCC-EEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 001042 1011 SIRMDRD-TVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWEN 1075 (1178)
Q Consensus 1011 ~l~~~~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~ 1075 (1178)
|++-+++ ++|+|+.+|.||+||--..+....+.+-..+|.++..+.||+++++.+ +..+.+++.
T Consensus 582 ~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 582 CFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred EEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 8887654 999999999999999433333344566788999999999999988765 556777775
No 377
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.74 E-value=1.9 Score=50.75 Aligned_cols=255 Identities=11% Similarity=0.112 Sum_probs=149.4
Q ss_pred EEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEE-EEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEE-E
Q 001042 905 VLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVL-TASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILA-A 981 (1178)
Q Consensus 905 I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~-sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~-s 981 (1178)
+.+++..+.+....+..+. ....+... .+..+. +-.....+...+................-..++.++.+..+. .
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~ 91 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVT 91 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEe
Confidence 5566665555555444333 33334444 343333 332333555555542222222211113446778888887544 4
Q ss_pred EeCCCeEEEEECCCCceEEEEecCCccEEEEEE--cCCEEEEEeC---CCcEEEEEcCCCeeeeEeccCCCcEEEEEEec
Q 001042 982 GGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM--DRDTVITGSD---DWTARMWSISRGTCDAVLACHAGPVQCVEYSS 1056 (1178)
Q Consensus 982 gs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sgs~---dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp 1056 (1178)
...++.|.+.|..+.+......--. ....+++ ++..+..+.. ++++.+.|..+++...+...-..+ ..++++|
T Consensus 92 ~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p 169 (381)
T COG3391 92 TGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDP 169 (381)
T ss_pred cCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECC
Confidence 4456899999988877766653222 4445555 4545555444 788999999888888775543344 8999999
Q ss_pred CCCEEEEEe-CCCcEEEEECCCCceEEEEE----ec-ccCCcEEEEecCCCEEEEEeCC---CcEEEEEcCCCccccccC
Q 001042 1057 SDRGIITGS-SDGLLRFWENDDGGIKCVKN----VT-IHSSAILSINAGDHWLGIGAAD---NSMSLFHRPQERLGGFSG 1127 (1178)
Q Consensus 1057 dg~~L~sgs-~Dg~I~iwd~~~~~~~~~~~----~~-~h~~~i~~is~dg~~Lasgs~D---g~I~iwd~~~~~~~~~~~ 1127 (1178)
+|+.++... .++.|.+.|..+..... .. .. +.......++++|..+.+.... +.+...|..++.....
T Consensus 170 ~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~-- 246 (381)
T COG3391 170 DGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT-- 246 (381)
T ss_pred CCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe--
Confidence 999766554 78899999977652221 11 11 2233446778999866665443 5888888764422110
Q ss_pred CCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeC-CCcEEEEECCCC
Q 001042 1128 TGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGR-NGLLRLWEATIN 1177 (1178)
Q Consensus 1128 ~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~-Dg~V~IWdv~tg 1177 (1178)
....+.. .-..++.+|+|+.+.+... .+.+.+-|..+.
T Consensus 247 -----------~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 247 -----------DLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred -----------ccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence 0011111 3456788999998888744 377777776653
No 378
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.72 E-value=0.00051 Score=79.85 Aligned_cols=182 Identities=14% Similarity=0.205 Sum_probs=120.0
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcE--EEEecCCCCceEEEEEe--CCCeEEEEe----CCCeEEEEeCCCC--eEEE--E
Q 001042 892 DRGKVVSGSDDQSVLVWDKQTSQL--LEELKGHDAQVSCVRML--SGERVLTAS----HDGTVKMWDVRTD--TCVA--T 959 (1178)
Q Consensus 892 d~~~l~sgs~dg~I~iwd~~t~~~--~~~l~~h~~~V~~l~~~--~~~~l~sgs----~dg~V~iwd~~~~--~~~~--~ 959 (1178)
+...+++|..+|.|.+-.+....- -....++....++++|+ +.+.+++|- .|..+.|||+.++ .+.. .
T Consensus 69 d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~ 148 (783)
T KOG1008|consen 69 DRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPL 148 (783)
T ss_pred chhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccc
Confidence 345678888889998887754322 23456788899999998 557777773 3677999999877 2221 1
Q ss_pred ecC-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-eEEEEecCCccEEEEEE---cCCEEEEEeCCCcEEEEEc-
Q 001042 960 VGR-CSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGR-QMHKFLGHTKWIRSIRM---DRDTVITGSDDWTARMWSI- 1033 (1178)
Q Consensus 960 ~~~-~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~-~~~~~~~~~~~v~~l~~---~~~~l~sgs~dg~I~iwd~- 1033 (1178)
+.. ......+++|..+.+.+.+|.....+.++|++... ....+ .+..+..+.. .++++++.+ ||.|.+||.
T Consensus 149 fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~ 225 (783)
T KOG1008|consen 149 FSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTY 225 (783)
T ss_pred cccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceeccc-cCceeeccch
Confidence 212 33456689999999999999999999999998432 12222 2223333443 567887776 999999993
Q ss_pred CCC-eeeeEeccC----CCcEEEEEEecCCC-EEEEEe-CCCcEEEEECC
Q 001042 1034 SRG-TCDAVLACH----AGPVQCVEYSSSDR-GIITGS-SDGLLRFWEND 1076 (1178)
Q Consensus 1034 ~~~-~~~~~~~~h----~~~I~~l~~spdg~-~L~sgs-~Dg~I~iwd~~ 1076 (1178)
++- .++..+... ...+..++|.|... .+++.+ ..++|+.+|+.
T Consensus 226 rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 226 RNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred hhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 332 222222222 22489999999643 344444 55789999875
No 379
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.71 E-value=1.8 Score=51.60 Aligned_cols=235 Identities=12% Similarity=0.115 Sum_probs=127.0
Q ss_pred cCCCCEEEEE-eCCC----cEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEEeCCC-----------cEEEEECC
Q 001042 848 REDAGFFISG-STDC----LVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQ-----------SVLVWDKQ 911 (1178)
Q Consensus 848 s~d~~~Lasg-s~Dg----~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sgs~dg-----------~I~iwd~~ 911 (1178)
||||+++|.+ +..| ++++.|+.. +..+...+......-.+|.++++.++....+. .|+.|++.
T Consensus 132 Spdg~~la~~~s~~G~e~~~l~v~Dl~t-g~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~g 210 (414)
T PF02897_consen 132 SPDGKRLAYSLSDGGSEWYTLRVFDLET-GKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLG 210 (414)
T ss_dssp TTTSSEEEEEEEETTSSEEEEEEEETTT-TEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETT
T ss_pred CCCCCEEEEEecCCCCceEEEEEEECCC-CcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECC
Confidence 4999998865 3334 599999873 33333333333322257888988876665333 37888887
Q ss_pred CCcE--EEEecCCCCc--eEEEEEe-CCCeEEEEe-C--C-CeEEEEeCCCC----eEEEEecCCCCCE-EEEEEeCCCC
Q 001042 912 TSQL--LEELKGHDAQ--VSCVRML-SGERVLTAS-H--D-GTVKMWDVRTD----TCVATVGRCSSAV-LCMEYDDSTG 977 (1178)
Q Consensus 912 t~~~--~~~l~~h~~~--V~~l~~~-~~~~l~sgs-~--d-g~V~iwd~~~~----~~~~~~~~~~~~I-~~l~~sp~~~ 977 (1178)
+... ...+...... ...+..+ ++..++..+ . + ..+.+.|...+ .....+......+ ..+... .+.
T Consensus 211 t~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~ 289 (414)
T PF02897_consen 211 TPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-GDR 289 (414)
T ss_dssp S-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-TTE
T ss_pred CChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-CCE
Confidence 7643 2344443333 4566666 667665433 2 2 45788888764 2233332333333 334333 444
Q ss_pred EEEEEe---CCCeEEEEECCCCce---EEEEecCCc--cEEEEEEcCCEEEEEe-CCC--cEEEEEcCCCeeeeEec-cC
Q 001042 978 ILAAGG---RDAVANIWDIRAGRQ---MHKFLGHTK--WIRSIRMDRDTVITGS-DDW--TARMWSISRGTCDAVLA-CH 1045 (1178)
Q Consensus 978 ~l~sgs---~dg~I~lwD~~~~~~---~~~~~~~~~--~v~~l~~~~~~l~sgs-~dg--~I~iwd~~~~~~~~~~~-~h 1045 (1178)
+++... .++.|...++.+... ...+..+.. .+..+...+++|+... .++ .|+++|+..+.....+. .-
T Consensus 290 ~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~ 369 (414)
T PF02897_consen 290 LYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPE 369 (414)
T ss_dssp EEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSS
T ss_pred EEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCc
Confidence 444332 346788888887653 224444444 5777777777555544 444 48889988344333333 23
Q ss_pred CCcEEEEEEecCCCEEEEE--e--CCCcEEEEECCCCceEEEE
Q 001042 1046 AGPVQCVEYSSSDRGIITG--S--SDGLLRFWENDDGGIKCVK 1084 (1178)
Q Consensus 1046 ~~~I~~l~~spdg~~L~sg--s--~Dg~I~iwd~~~~~~~~~~ 1084 (1178)
.+.|..+...++++.+... | .-+++..||+.+++...++
T Consensus 370 ~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 370 AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence 4446666655665554322 2 2357888899988655443
No 380
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.64 E-value=0.0008 Score=78.26 Aligned_cols=196 Identities=12% Similarity=0.189 Sum_probs=123.8
Q ss_pred CCEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCceE--EEEecCCccEEEEEEcC---CEEEEEe----CCCcEEEEEc
Q 001042 965 SAVLCMEYDD--STGILAAGGRDAVANIWDIRAGRQM--HKFLGHTKWIRSIRMDR---DTVITGS----DDWTARMWSI 1033 (1178)
Q Consensus 965 ~~I~~l~~sp--~~~~l~sgs~dg~I~lwD~~~~~~~--~~~~~~~~~v~~l~~~~---~~l~sgs----~dg~I~iwd~ 1033 (1178)
..+.|+++.- +...+++|..+|.|.+-..+...-- ....++....++++|++ +.||+|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 3455666544 3357888999999999888764332 23456777889999954 5777774 4567999999
Q ss_pred CCC--eeee--Eecc-CCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEEec-CCCEEEEEe
Q 001042 1034 SRG--TCDA--VLAC-HAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSINA-GDHWLGIGA 1107 (1178)
Q Consensus 1034 ~~~--~~~~--~~~~-h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is~-dg~~Lasgs 1107 (1178)
.++ .+.. .+.+ ......+++|..+.+.+.+|.....+.++|++-.. .....+......-..++| .+.++++..
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~-~~~~svnTk~vqG~tVdp~~~nY~cs~~ 215 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL-DSVSSVNTKYVQGITVDPFSPNYFCSNS 215 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhh-hhhhhhhhhhcccceecCCCCCceeccc
Confidence 876 2222 2222 33456689999899999999999999999987321 111111111111234566 778888765
Q ss_pred CCCcEEEEEcCCCccccccCCCCCccceeEeecc----CCCcccEEEEEEcCCC-CEEEEEeC-CCcEEEEECC
Q 001042 1108 ADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTP----QKTVAVVRCIASDLER-KRICSGGR-NGLLRLWEAT 1175 (1178)
Q Consensus 1108 ~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~----~~h~~~V~~lafspdg-~~Las~s~-Dg~V~IWdv~ 1175 (1178)
||.|.+||....- . .++... ......+..++|+|-. ..+++... .++|+.+++.
T Consensus 216 -dg~iAiwD~~rni-------e------npl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 216 -DGDIAIWDTYRNI-------E------NPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred -cCceeeccchhhh-------c------cHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 9999999943110 0 111111 1122358899999954 34556654 4789998875
No 381
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.58 E-value=1.2 Score=52.22 Aligned_cols=81 Identities=16% Similarity=0.123 Sum_probs=58.8
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEE----EEE-cC------------C----EEEEE
Q 001042 964 SSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRS----IRM-DR------------D----TVITG 1022 (1178)
Q Consensus 964 ~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~----l~~-~~------------~----~l~sg 1022 (1178)
...+.+++.+|++++.++...-|.|.++|+.++..++.+++..+.-.. ..- +. + .++-+
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya 386 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA 386 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence 345788999999999998888899999999999888888776542111 111 11 1 34445
Q ss_pred eCCCcEEEEEcCCCeeeeEecc
Q 001042 1023 SDDWTARMWSISRGTCDAVLAC 1044 (1178)
Q Consensus 1023 s~dg~I~iwd~~~~~~~~~~~~ 1044 (1178)
-.-|.|.||++++|..+..+..
T Consensus 387 prRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 387 PRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred ccCCeEEEEecCCCCEEEEEEe
Confidence 5788999999998887776653
No 382
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.57 E-value=0.0039 Score=45.00 Aligned_cols=38 Identities=24% Similarity=0.481 Sum_probs=32.9
Q ss_pred eEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001042 1136 QLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWE 1173 (1178)
Q Consensus 1136 ~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWd 1173 (1178)
+.......|...|.++.|++++.++++++.||.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34455567888999999999999999999999999996
No 383
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.53 E-value=0.51 Score=55.35 Aligned_cols=221 Identities=12% Similarity=0.139 Sum_probs=118.2
Q ss_pred ceEEEEecCCCCcccccccc--eeecccccccCCC-CCCCCCCC-----------------------cCCcccccceEEe
Q 001042 770 SWVQSMFSREASSRSHSFSR--VRKWTSDAANENG-TPRKQDST-----------------------AGGKKIQSNIRII 823 (1178)
Q Consensus 770 ~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~-~~~~~~~~-----------------------~~~~~~~~~~~~l 823 (1178)
.|.++.|+++..-+|++... |.||.+...+..+ ........ ...++.-.+...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 47788999997777777655 6666655543322 00000000 0001122345556
Q ss_pred cccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEe--ecc------cccceEEE------
Q 001042 824 RGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRAT--LKG------HTRTVRAI------ 889 (1178)
Q Consensus 824 ~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~--l~~------h~~~V~~~------ 889 (1178)
....++|++++.| |-.++|.|..+|.+.|.|+. +...+.. +.. ....++++
T Consensus 83 ~~~~g~vtal~~S-------------~iGFvaigy~~G~l~viD~R--GPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~ 147 (395)
T PF08596_consen 83 DAKQGPVTALKNS-------------DIGFVAIGYESGSLVVIDLR--GPAVIYNENIRESFLSKSSSSYVTSIEFSVMT 147 (395)
T ss_dssp ---S-SEEEEEE--------------BTSEEEEEETTSEEEEEETT--TTEEEEEEEGGG--T-SS----EEEEEEEEEE
T ss_pred eccCCcEeEEecC-------------CCcEEEEEecCCcEEEEECC--CCeEEeeccccccccccccccCeeEEEEEEEe
Confidence 6678999999985 67899999999999999975 4444332 222 12233332
Q ss_pred -ecCC---CEEEEEeCCCcEEEEECC--C-CcE----EEEecCCCCceEEEEEe--C--------------------CCe
Q 001042 890 -NSDR---GKVVSGSDDQSVLVWDKQ--T-SQL----LEELKGHDAQVSCVRML--S--------------------GER 936 (1178)
Q Consensus 890 -s~d~---~~l~sgs~dg~I~iwd~~--t-~~~----~~~l~~h~~~V~~l~~~--~--------------------~~~ 936 (1178)
..|+ -.+++|+..|.+.+|.+. . +.. ......+.+.|..+..- + -..
T Consensus 148 ~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g 227 (395)
T PF08596_consen 148 LGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPG 227 (395)
T ss_dssp -TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----E
T ss_pred cCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCc
Confidence 1233 368899999999999864 2 222 12222455666555421 1 012
Q ss_pred EEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEE-----eCCCCEEEEEeCCCeEEEEECCCCceEEEEecC
Q 001042 937 VLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEY-----DDSTGILAAGGRDAVANIWDIRAGRQMHKFLGH 1005 (1178)
Q Consensus 937 l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~-----sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~ 1005 (1178)
++....+..++++...+.+..++..........+.+ ...+..|++-..+|.++++.+..-+.+....-.
T Consensus 228 ~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~ 301 (395)
T PF08596_consen 228 YVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLP 301 (395)
T ss_dssp EEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-S
T ss_pred EEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCC
Confidence 555566788999999888776665432223334444 235677888899999999999998888776543
No 384
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.51 E-value=0.41 Score=60.70 Aligned_cols=224 Identities=12% Similarity=0.106 Sum_probs=118.6
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEecCCCCc--------eEEEEEe-----------------CCCeEEEEeCCCeEE
Q 001042 893 RGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQ--------VSCVRML-----------------SGERVLTASHDGTVK 947 (1178)
Q Consensus 893 ~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~--------V~~l~~~-----------------~~~~l~sgs~dg~V~ 947 (1178)
+..++.++.++.|.-.|..+|+.+.++...... ...+.+. .+.+++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 456666777778888888888877766532211 1223332 234788999999999
Q ss_pred EEeCCCCeEEEEecCCCCCEE-------------EEEEeC--CCCEEEEEeC----------CCeEEEEECCCCceEEEE
Q 001042 948 MWDVRTDTCVATVGRCSSAVL-------------CMEYDD--STGILAAGGR----------DAVANIWDIRAGRQMHKF 1002 (1178)
Q Consensus 948 iwd~~~~~~~~~~~~~~~~I~-------------~l~~sp--~~~~l~sgs~----------dg~I~lwD~~~~~~~~~~ 1002 (1178)
-.|.++|+....+.. ++.+. .+.-.| .+..+++|+. +|.|+-+|.++|+.+..+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999998877632 11110 111122 2345666643 688999999999998877
Q ss_pred ecCCccEEEEEEcCCEEEEEeCCC-cEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceE
Q 001042 1003 LGHTKWIRSIRMDRDTVITGSDDW-TARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIK 1081 (1178)
Q Consensus 1003 ~~~~~~v~~l~~~~~~l~sgs~dg-~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~ 1081 (1178)
..-..........++....++.+. ...-+|.+.+....-. +...+ .+....+.-......+.|.-.|.++|+.+
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~pt-Gn~~p----d~~g~~r~~~~n~y~~slvALD~~TGk~~ 427 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPM-GNQTP----DQWGGDRTPADEKYSSSLVALDATTGKER 427 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeC-CCccc----cccCCccccCcccccceEEEEeCCCCceE
Confidence 532111111111222222122111 2333444333321111 11100 00000000001112445777777787555
Q ss_pred EEEEecccCC--------cE-EEEec-CCC---EEEEEeCCCcEEEEEcCCCcc
Q 001042 1082 CVKNVTIHSS--------AI-LSINA-GDH---WLGIGAADNSMSLFHRPQERL 1122 (1178)
Q Consensus 1082 ~~~~~~~h~~--------~i-~~is~-dg~---~Lasgs~Dg~I~iwd~~~~~~ 1122 (1178)
-......|.. ++ ..+.. +|+ .++.++.+|.+.+.|..+++.
T Consensus 428 W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 481 (764)
T TIGR03074 428 WVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEP 481 (764)
T ss_pred EEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCE
Confidence 4444433321 11 22333 553 788899999999999987654
No 385
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.50 E-value=3.9 Score=51.37 Aligned_cols=317 Identities=13% Similarity=0.120 Sum_probs=163.5
Q ss_pred cccceEEEEeeeccceeccccccC-CCCEEEEEeCCCcEEEEcCCCCCceeeEe-ecccc--cce--EEEecCCCEEEEE
Q 001042 826 HAGAITALHCVTKREVWDLVGDRE-DAGFFISGSTDCLVKIWDPSLRGSELRAT-LKGHT--RTV--RAINSDRGKVVSG 899 (1178)
Q Consensus 826 H~~~V~~l~fs~~~~~~~~~~~s~-d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~-l~~h~--~~V--~~~s~d~~~l~sg 899 (1178)
-...|.|+.++|..+ .+ ..++++.|.++..+.+--........... +.+.. ..| .++-.|..+|.++
T Consensus 529 ~e~evaCLDisp~~d-------~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlva 601 (1096)
T KOG1897|consen 529 FEYEVACLDISPLGD-------APNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVA 601 (1096)
T ss_pred ecceeEEEecccCCC-------CCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEE
Confidence 356799999986411 11 23478889887766654432111111111 22211 112 1455678999999
Q ss_pred eCCCcEEEEEC--CCCcEEEEe--cCCCCceEEEEEe--CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEE-EE
Q 001042 900 SDDQSVLVWDK--QTSQLLEEL--KGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCM-EY 972 (1178)
Q Consensus 900 s~dg~I~iwd~--~t~~~~~~l--~~h~~~V~~l~~~--~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l-~~ 972 (1178)
..||.+.-+.+ .+|+.-..- .-...++.--.|+ ..+.++++ .|.-..+|.- +++.+.+--.. ..+..+ .|
T Consensus 602 lgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~-sdrP~viY~~-n~kLv~spls~-kev~~~c~f 678 (1096)
T KOG1897|consen 602 LGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFAL-SDRPTVIYSS-NGKLVYSPLSL-KEVNHMCPF 678 (1096)
T ss_pred cCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEe-CCCCEEEEec-CCcEEEeccch-HHhhhhccc
Confidence 99999877655 444432221 1224455555565 34444444 4444455543 33333221111 111111 12
Q ss_pred eC--CCCEEEEEeCCCeEEEEECCCCce--EEEEecCCccEEEEEEcCC--EEEEEe-----------CC---CcEEEEE
Q 001042 973 DD--STGILAAGGRDAVANIWDIRAGRQ--MHKFLGHTKWIRSIRMDRD--TVITGS-----------DD---WTARMWS 1032 (1178)
Q Consensus 973 sp--~~~~l~sgs~dg~I~lwD~~~~~~--~~~~~~~~~~v~~l~~~~~--~l~sgs-----------~d---g~I~iwd 1032 (1178)
+. -...++.+. .+.+.+.-+..-+. +++. .-......+++.+. .+.+.+ .. ..++++|
T Consensus 679 ~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtv-pl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD 756 (1096)
T KOG1897|consen 679 NSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTV-PLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLD 756 (1096)
T ss_pred ccccCCceEEEec-CCceEEEEecchhhcceeee-cCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEec
Confidence 21 122344443 34566655543222 2222 22223334444331 111111 11 2366677
Q ss_pred cCCCeeeeEeccC----CCcEEEEEEecC-CCEEEEEeC----------CCcEEEEECCC-CceEEEEEecccCCcEEEE
Q 001042 1033 ISRGTCDAVLACH----AGPVQCVEYSSS-DRGIITGSS----------DGLLRFWENDD-GGIKCVKNVTIHSSAILSI 1096 (1178)
Q Consensus 1033 ~~~~~~~~~~~~h----~~~I~~l~~spd-g~~L~sgs~----------Dg~I~iwd~~~-~~~~~~~~~~~h~~~i~~i 1096 (1178)
-++.+.+...+-. .-.|.++.|..| +.+++.|+. .|.|.++.... ++.+.+.... -.+.+.++
T Consensus 757 ~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~-v~Gav~aL 835 (1096)
T KOG1897|consen 757 QNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETV-VKGAVYAL 835 (1096)
T ss_pred CCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeee-eccceeeh
Confidence 6655544332211 123556668777 677777752 47788888877 4334433332 34555666
Q ss_pred -ecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 001042 1097 -NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLW 1172 (1178)
Q Consensus 1097 -s~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IW 1172 (1178)
-.+|+++|.- ...|++|+..++ +.++.-..|...+..+...-.|..++.|+.=+.+.+-
T Consensus 836 ~~fngkllA~I--n~~vrLye~t~~---------------~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll 895 (1096)
T KOG1897|consen 836 VEFNGKLLAGI--NQSVRLYEWTTE---------------RELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLL 895 (1096)
T ss_pred hhhCCeEEEec--CcEEEEEEcccc---------------ceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEE
Confidence 4788888764 468999998754 2333344566677888888888888888776666553
No 386
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.50 E-value=1.1 Score=48.85 Aligned_cols=193 Identities=12% Similarity=0.173 Sum_probs=107.3
Q ss_pred eecccccceEE--EecCCC-EEEEEeCCCcEEEEECCCCcEEEEecCC-CCceEEEEEeCCCeEEEEe-CCCeEEEEeCC
Q 001042 878 TLKGHTRTVRA--INSDRG-KVVSGSDDQSVLVWDKQTSQLLEELKGH-DAQVSCVRMLSGERVLTAS-HDGTVKMWDVR 952 (1178)
Q Consensus 878 ~l~~h~~~V~~--~s~d~~-~l~sgs~dg~I~iwd~~t~~~~~~l~~h-~~~V~~l~~~~~~~l~sgs-~dg~V~iwd~~ 952 (1178)
.+.+-...+.. +.|+.+ .+++....+.|..++. +|+.++.+.-. .+..-.+++..++.++... .++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 44454445554 467755 4555667788888886 48888877643 3668889998666666665 48999998883
Q ss_pred CCe------EEEEec-----CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC---CceEEE--Ee------cCCccEE
Q 001042 953 TDT------CVATVG-----RCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRA---GRQMHK--FL------GHTKWIR 1010 (1178)
Q Consensus 953 ~~~------~~~~~~-----~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~---~~~~~~--~~------~~~~~v~ 1010 (1178)
... ....+. .++..+..++|++.++.|+++-...-..+|.++. ...+.. .. .....+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 321 112221 2445689999999988888887776666666653 222211 11 1233577
Q ss_pred EEEEcCC---EEEEEeCCCcEEEEEcCCCeeeeEeccCC---------CcEEEEEEecCCCEEEEEeCCCcEEEE
Q 001042 1011 SIRMDRD---TVITGSDDWTARMWSISRGTCDAVLACHA---------GPVQCVEYSSSDRGIITGSSDGLLRFW 1073 (1178)
Q Consensus 1011 ~l~~~~~---~l~sgs~dg~I~iwd~~~~~~~~~~~~h~---------~~I~~l~~spdg~~L~sgs~Dg~I~iw 1073 (1178)
++++++. .++.+..+..+..+| .+|+.+..+.-.. ...-+++|+++|++.+++ .-+..+++
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence 8888654 777788888999999 6777666554222 257899999999765554 55544443
No 387
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.45 E-value=1.8 Score=47.06 Aligned_cols=173 Identities=9% Similarity=-0.003 Sum_probs=111.4
Q ss_pred ecCCCEEEEEeCCC--cEEEEECCCCcEEEEecCC-CCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCC
Q 001042 890 NSDRGKVVSGSDDQ--SVLVWDKQTSQLLEELKGH-DAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSA 966 (1178)
Q Consensus 890 s~d~~~l~sgs~dg--~I~iwd~~t~~~~~~l~~h-~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~ 966 (1178)
..+|..+-+.+.-| .|+.+|+.+|+......-. .---..++..++......-.++...+||..+-+.+.++.- ...
T Consensus 53 ~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y-~~E 131 (264)
T PF05096_consen 53 LDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTFPY-PGE 131 (264)
T ss_dssp EETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE--SSS
T ss_pred cCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEEEec-CCc
Confidence 45667777777655 7999999999987655432 2223445555666666667889999999999998888743 345
Q ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecC--Cc---cEEEEEE-cCCEEEEEeCCCcEEEEEcCCCeeee
Q 001042 967 VLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGH--TK---WIRSIRM-DRDTVITGSDDWTARMWSISRGTCDA 1040 (1178)
Q Consensus 967 I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~--~~---~v~~l~~-~~~~l~sgs~dg~I~iwd~~~~~~~~ 1040 (1178)
=+.++ .+++.|+.......++.+|..+.+..+++.-. .. .++.+.+ ++...|=.-....|...|..+|+...
T Consensus 132 GWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~tG~V~~ 209 (264)
T PF05096_consen 132 GWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPETGKVVG 209 (264)
T ss_dssp --EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT-BEEE
T ss_pred ceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCCCeEEE
Confidence 56777 45667777777889999999988777665432 22 4555666 44444444456678888999988776
Q ss_pred Eecc---------------CCCcEEEEEEecCCCEEEEEe
Q 001042 1041 VLAC---------------HAGPVQCVEYSSSDRGIITGS 1065 (1178)
Q Consensus 1041 ~~~~---------------h~~~I~~l~~spdg~~L~sgs 1065 (1178)
.+.. ..+-.+.+|++|.++.+...|
T Consensus 210 ~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 210 WIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 6521 134589999998877655544
No 388
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.42 E-value=0.58 Score=52.82 Aligned_cols=211 Identities=10% Similarity=0.060 Sum_probs=115.2
Q ss_pred CCCC-EEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEecCC-----
Q 001042 849 EDAG-FFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGH----- 922 (1178)
Q Consensus 849 ~d~~-~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h----- 922 (1178)
++.. ++.+--..+.|.-|+.. .+........+....+..+...+ .|+++. . -+.+++.+++..+..+..-
T Consensus 34 ~~~~~L~w~DI~~~~i~r~~~~-~g~~~~~~~p~~~~~~~~~d~~g-~Lv~~~-~-g~~~~~~~~~~~~t~~~~~~~~~~ 109 (307)
T COG3386 34 PDRGALLWVDILGGRIHRLDPE-TGKKRVFPSPGGFSSGALIDAGG-RLIACE-H-GVRLLDPDTGGKITLLAEPEDGLP 109 (307)
T ss_pred CCCCEEEEEeCCCCeEEEecCC-cCceEEEECCCCcccceeecCCC-eEEEEc-c-ccEEEeccCCceeEEeccccCCCC
Confidence 5555 55566667889999865 23233233333332332333333 333333 2 3566777666553332211
Q ss_pred CCceEEEEEeCCCeEEEEeCC------------CeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeC-CCeEE
Q 001042 923 DAQVSCVRMLSGERVLTASHD------------GTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGR-DAVAN 989 (1178)
Q Consensus 923 ~~~V~~l~~~~~~~l~sgs~d------------g~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~-dg~I~ 989 (1178)
....+.....+...+..+... |.|+.+|. .+..+..+..+-..-+.++||||++.++.+.. .+.|.
T Consensus 110 ~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~ 188 (307)
T COG3386 110 LNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIH 188 (307)
T ss_pred cCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEE
Confidence 122334444433334444333 33444443 45555555554555678999999988877765 47888
Q ss_pred EEECCC--Cce-----EEEEecCCccEEEEEEc--CCEEEEEeCCC-cEEEEEcCCCeeeeEeccCCCcEEEEEEe-cCC
Q 001042 990 IWDIRA--GRQ-----MHKFLGHTKWIRSIRMD--RDTVITGSDDW-TARMWSISRGTCDAVLACHAGPVQCVEYS-SSD 1058 (1178)
Q Consensus 990 lwD~~~--~~~-----~~~~~~~~~~v~~l~~~--~~~l~sgs~dg-~I~iwd~~~~~~~~~~~~h~~~I~~l~~s-pdg 1058 (1178)
-|++.. +.. ...+....+..-.++.+ +++.+++..+| .|..|+.. |+.+..+.-....+++++|- ++.
T Consensus 189 r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~ 267 (307)
T COG3386 189 RYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDL 267 (307)
T ss_pred EEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCc
Confidence 887752 211 11122233444455553 44444444444 89999987 88888888766778888885 344
Q ss_pred CEEEEEe
Q 001042 1059 RGIITGS 1065 (1178)
Q Consensus 1059 ~~L~sgs 1065 (1178)
+.|...+
T Consensus 268 ~~L~iTs 274 (307)
T COG3386 268 NTLYITS 274 (307)
T ss_pred CEEEEEe
Confidence 5544443
No 389
>PHA03098 kelch-like protein; Provisional
Probab=96.37 E-value=0.2 Score=62.02 Aligned_cols=185 Identities=7% Similarity=0.031 Sum_probs=94.0
Q ss_pred CCCeEEEEeCCC------eEEEEeCCCCeEEEEecC--CCCCEEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCceE
Q 001042 933 SGERVLTASHDG------TVKMWDVRTDTCVATVGR--CSSAVLCMEYDDSTGILAAGGRD-----AVANIWDIRAGRQM 999 (1178)
Q Consensus 933 ~~~~l~sgs~dg------~V~iwd~~~~~~~~~~~~--~~~~I~~l~~sp~~~~l~sgs~d-----g~I~lwD~~~~~~~ 999 (1178)
++..++.||.++ .+..||..+++....-.. .......+ .-++..++.||.+ ..+..||..+++-.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT--VFNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE--EECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 455555555432 467788877665322111 11111222 2356777778765 34778888766432
Q ss_pred EE--EecCCccEEEEEEcCCEEEEEeCC------CcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCC----
Q 001042 1000 HK--FLGHTKWIRSIRMDRDTVITGSDD------WTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSD---- 1067 (1178)
Q Consensus 1000 ~~--~~~~~~~v~~l~~~~~~l~sgs~d------g~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~D---- 1067 (1178)
.. +............++...+.|+.+ ..+..||..+++....-......-...+...++...+.||.+
T Consensus 372 ~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~ 451 (534)
T PHA03098 372 EEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDN 451 (534)
T ss_pred eCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCC
Confidence 21 111112222334456666666632 358889987765432111000000111222356666777643
Q ss_pred ----CcEEEEECCCCceEEEEEecccCCcEEEEecCCCEEEEEeCC-----CcEEEEEcCC
Q 001042 1068 ----GLLRFWENDDGGIKCVKNVTIHSSAILSINAGDHWLGIGAAD-----NSMSLFHRPQ 1119 (1178)
Q Consensus 1068 ----g~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~Lasgs~D-----g~I~iwd~~~ 1119 (1178)
..+.+||..++++..+...............++..++.|+.+ +.+.+||..+
T Consensus 452 ~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 452 IKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred CcccceEEEecCCCCceeeCCCCCcccccceEEEECCEEEEEcCCcCCcccceeEEEeCCC
Confidence 238889998886665543322222222233477777777764 4677888763
No 390
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.30 E-value=2.6 Score=49.62 Aligned_cols=189 Identities=17% Similarity=0.180 Sum_probs=127.2
Q ss_pred EEecCCCEE-EEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeC---CCeEEEEeCCCCeEEEEecC
Q 001042 888 AINSDRGKV-VSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASH---DGTVKMWDVRTDTCVATVGR 962 (1178)
Q Consensus 888 ~~s~d~~~l-~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~---dg~V~iwd~~~~~~~~~~~~ 962 (1178)
++++.+..+ ++...++.|.+.|..+.+.......-. ....++++ ++..+.++.. ++++.+.|..+++.......
T Consensus 80 ~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~v 158 (381)
T COG3391 80 AVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPV 158 (381)
T ss_pred eeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEec
Confidence 567777754 445556899999988877776654322 55667777 5656665554 78999999999988887544
Q ss_pred CCCCEEEEEEeCCCCEEEEEe-CCCeEEEEECCCCceEE-E---EecCCccEEEEEE--cCCEEEEEeCC---CcEEEEE
Q 001042 963 CSSAVLCMEYDDSTGILAAGG-RDAVANIWDIRAGRQMH-K---FLGHTKWIRSIRM--DRDTVITGSDD---WTARMWS 1032 (1178)
Q Consensus 963 ~~~~I~~l~~sp~~~~l~sgs-~dg~I~lwD~~~~~~~~-~---~~~~~~~v~~l~~--~~~~l~sgs~d---g~I~iwd 1032 (1178)
...+ ..++++|+|+.+++.. .++.+.+.|..+....+ . ..........+.+ ++..+.+.... +.+...|
T Consensus 159 G~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id 237 (381)
T COG3391 159 GNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKID 237 (381)
T ss_pred CCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEe
Confidence 4444 8999999999766665 78999999977665553 1 0111122233444 55544443333 6899999
Q ss_pred cCCCeeeeEeccCCC-cEEEEEEecCCCEEEEEe-CCCcEEEEECCCC
Q 001042 1033 ISRGTCDAVLACHAG-PVQCVEYSSSDRGIITGS-SDGLLRFWENDDG 1078 (1178)
Q Consensus 1033 ~~~~~~~~~~~~h~~-~I~~l~~spdg~~L~sgs-~Dg~I~iwd~~~~ 1078 (1178)
..++.....-..-.. ....+..+|+|+.+.+.. ..+.+.+-|..+.
T Consensus 238 ~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 238 TATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred CCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence 888776655221112 466789999999988774 4478888888776
No 391
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.29 E-value=0.22 Score=58.88 Aligned_cols=171 Identities=9% Similarity=0.054 Sum_probs=100.8
Q ss_pred eEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEe---CC-CeEEEEECCCCceEEEEe-cCCccEEEEEEcCCE-
Q 001042 945 TVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGG---RD-AVANIWDIRAGRQMHKFL-GHTKWIRSIRMDRDT- 1018 (1178)
Q Consensus 945 ~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs---~d-g~I~lwD~~~~~~~~~~~-~~~~~v~~l~~~~~~- 1018 (1178)
.+.+-|.. |.....+......+..-+|+|++..++... .. ..+.++|+.+++...... .........+.++..
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l 252 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKL 252 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEE
Confidence 34444443 444455555566777788999988765542 23 469999999887654443 111222333445554
Q ss_pred EEEEeCCCc--EEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEe-CCCc--EEEEECCCCceEEEEEecccCCcE
Q 001042 1019 VITGSDDWT--ARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGS-SDGL--LRFWENDDGGIKCVKNVTIHSSAI 1093 (1178)
Q Consensus 1019 l~sgs~dg~--I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs-~Dg~--I~iwd~~~~~~~~~~~~~~h~~~i 1093 (1178)
+++...||. |++.|+..+.. ..+....+.-+.-.|+|||++++-.+ ..|. |.+.+.+.+.. ...+..+.....
T Consensus 253 ~f~~~rdg~~~iy~~dl~~~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~ 330 (425)
T COG0823 253 AFSSSRDGSPDIYLMDLDGKNL-PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSN 330 (425)
T ss_pred EEEECCCCCccEEEEcCCCCcc-eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcC
Confidence 455556665 66667776663 33443344444678999999988665 3444 55666666543 233333334445
Q ss_pred EEEecCCCEEEEEeCC-Cc--EEEEEcC
Q 001042 1094 LSINAGDHWLGIGAAD-NS--MSLFHRP 1118 (1178)
Q Consensus 1094 ~~is~dg~~Lasgs~D-g~--I~iwd~~ 1118 (1178)
-.++|||++++..+.. |. |.+.|+.
T Consensus 331 p~~SpdG~~i~~~~~~~g~~~i~~~~~~ 358 (425)
T COG0823 331 PVWSPDGDKIVFESSSGGQWDIDKNDLA 358 (425)
T ss_pred ccCCCCCCEEEEEeccCCceeeEEeccC
Confidence 5669999999987743 44 5555554
No 392
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.21 E-value=0.011 Score=42.59 Aligned_cols=39 Identities=31% Similarity=0.667 Sum_probs=34.3
Q ss_pred CeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEE
Q 001042 1036 GTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWE 1074 (1178)
Q Consensus 1036 ~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd 1074 (1178)
+++...+..|...|.++.|++++..+++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778889999999999999999999999999996
No 393
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.08 E-value=1.8 Score=47.27 Aligned_cols=194 Identities=13% Similarity=0.134 Sum_probs=100.3
Q ss_pred EEecccccceEEEEeeeccceeccccccCC-CCEEEEEeCCCcEEEEcCCCCCceeeEe--ecccc-cceEEEecCCCEE
Q 001042 821 RIIRGHAGAITALHCVTKREVWDLVGDRED-AGFFISGSTDCLVKIWDPSLRGSELRAT--LKGHT-RTVRAINSDRGKV 896 (1178)
Q Consensus 821 ~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d-~~~Lasgs~Dg~I~iWd~~~~~~~~~~~--l~~h~-~~V~~~s~d~~~l 896 (1178)
+.+.|-...+..|+|. |+ +.++++....+.|.-.+.+ + +.+.. +.+.. -.-.++..++.++
T Consensus 15 ~~l~g~~~e~SGLTy~------------pd~~tLfaV~d~~~~i~els~~--G-~vlr~i~l~g~~D~EgI~y~g~~~~v 79 (248)
T PF06977_consen 15 KPLPGILDELSGLTYN------------PDTGTLFAVQDEPGEIYELSLD--G-KVLRRIPLDGFGDYEGITYLGNGRYV 79 (248)
T ss_dssp EE-TT--S-EEEEEEE------------TTTTEEEEEETTTTEEEEEETT-----EEEEEE-SS-SSEEEEEE-STTEEE
T ss_pred eECCCccCCccccEEc------------CCCCeEEEEECCCCEEEEEcCC--C-CEEEEEeCCCCCCceeEEEECCCEEE
Confidence 4566777779999998 55 4566667777888777743 3 33333 33321 1112334555556
Q ss_pred EEEeCCCcEEEEECCCCc----E--EEEec-----CCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCC---CeEEEEe-
Q 001042 897 VSGSDDQSVLVWDKQTSQ----L--LEELK-----GHDAQVSCVRML-SGERVLTASHDGTVKMWDVRT---DTCVATV- 960 (1178)
Q Consensus 897 ~sgs~dg~I~iwd~~t~~----~--~~~l~-----~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~---~~~~~~~- 960 (1178)
++.-.++.+.+.++.... . ...+. .++..+-.++|. .++.++++-...-..+|.+.. +......
T Consensus 80 l~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~ 159 (248)
T PF06977_consen 80 LSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSD 159 (248)
T ss_dssp EEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE
T ss_pred EEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecc
Confidence 655568899998883321 1 11221 345668999998 467777777776666666543 2211111
Q ss_pred -------cCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCceEEEEecCC---------ccEEEEEEcCC-EEEEE
Q 001042 961 -------GRCSSAVLCMEYDDST-GILAAGGRDAVANIWDIRAGRQMHKFLGHT---------KWIRSIRMDRD-TVITG 1022 (1178)
Q Consensus 961 -------~~~~~~I~~l~~sp~~-~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~---------~~v~~l~~~~~-~l~sg 1022 (1178)
......+.+++++|.. ++++....+..|..+| .+|+.+..+.-.. ...-.|+++++ .|...
T Consensus 160 ~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv 238 (248)
T PF06977_consen 160 DQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV 238 (248)
T ss_dssp -HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE
T ss_pred ccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE
Confidence 1133457899999955 5556666778899999 6777766554322 24567777544 45555
Q ss_pred eCCCcEEE
Q 001042 1023 SDDWTARM 1030 (1178)
Q Consensus 1023 s~dg~I~i 1030 (1178)
++-+..++
T Consensus 239 sEpNlfy~ 246 (248)
T PF06977_consen 239 SEPNLFYR 246 (248)
T ss_dssp ETTTEEEE
T ss_pred cCCceEEE
Confidence 55444443
No 394
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.07 E-value=0.77 Score=49.89 Aligned_cols=200 Identities=14% Similarity=0.103 Sum_probs=111.6
Q ss_pred EEEEecCCC-CCEEEEEEeCCCCEEEEEeCCC--eEEEEECCCCceEEEEecCCc-cEEEEEEcCCEEE-EEeCCCcEEE
Q 001042 956 CVATVGRCS-SAVLCMEYDDSTGILAAGGRDA--VANIWDIRAGRQMHKFLGHTK-WIRSIRMDRDTVI-TGSDDWTARM 1030 (1178)
Q Consensus 956 ~~~~~~~~~-~~I~~l~~sp~~~~l~sgs~dg--~I~lwD~~~~~~~~~~~~~~~-~v~~l~~~~~~l~-sgs~dg~I~i 1030 (1178)
.+.++.... .-...+.|..+|.++-+.+.-| .|+.+|+.+++......-... ---.++.-++.+. ..-.++...+
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~ 114 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFV 114 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEE
T ss_pred EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEE
Confidence 344443322 3345778877888877777666 799999999988766543322 2334455455433 4447889999
Q ss_pred EEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEEe----cCCCEEEEE
Q 001042 1031 WSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSIN----AGDHWLGIG 1106 (1178)
Q Consensus 1031 wd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is----~dg~~Lasg 1106 (1178)
||..+-+.+.++.- .+.=+.++ .||+.|+.......+.++|..+-+............++..++ -+|...|=.
T Consensus 115 yd~~tl~~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANV 191 (264)
T PF05096_consen 115 YDPNTLKKIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANV 191 (264)
T ss_dssp EETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEE
T ss_pred EccccceEEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEe
Confidence 99999988888863 45567777 457777777777789999987764333333333444443332 355555544
Q ss_pred eCCCcEEEEEcCCCccccccCCCCCccceeEeec------cCCCcccEEEEEEcCCCCEEEEEe
Q 001042 1107 AADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRT------PQKTVAVVRCIASDLERKRICSGG 1164 (1178)
Q Consensus 1107 s~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~------~~~h~~~V~~lafspdg~~Las~s 1164 (1178)
=....|...|..++++.+...-. .+... .....+..+.+|+.|+++.+...|
T Consensus 192 W~td~I~~Idp~tG~V~~~iDls------~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 192 WQTDRIVRIDPETGKVVGWIDLS------GLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp TTSSEEEEEETTT-BEEEEEE-H------HHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred CCCCeEEEEeCCCCeEEEEEEhh------HhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 45556666677654332111000 00000 011245689999998877665554
No 395
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.07 E-value=0.18 Score=59.58 Aligned_cols=181 Identities=16% Similarity=0.155 Sum_probs=100.7
Q ss_pred cceEEEEecCCCCcccccc------cceeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeecccee
Q 001042 769 RSWVQSMFSREASSRSHSF------SRVRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVW 842 (1178)
Q Consensus 769 ~~i~~~aFSpdg~~las~~------~dI~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~ 842 (1178)
..+..-+|+|||+.++... .++.+++++++... .+..+.++.. .-+|
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~-----------------~i~~~~g~~~---~P~f------- 245 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRP-----------------VILNFNGNNG---APAF------- 245 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccc-----------------eeeccCCccC---CccC-------
Confidence 4455568999998765542 22888998887731 2333444432 2334
Q ss_pred ccccccCCCCEEEEE-eCCCcEEEEcCCCCCceeeEeeccccc--ceEEEecCCCEEEEEeC-CC--cEEEEECCCCcEE
Q 001042 843 DLVGDREDAGFFISG-STDCLVKIWDPSLRGSELRATLKGHTR--TVRAINSDRGKVVSGSD-DQ--SVLVWDKQTSQLL 916 (1178)
Q Consensus 843 ~~~~~s~d~~~Lasg-s~Dg~I~iWd~~~~~~~~~~~l~~h~~--~V~~~s~d~~~l~sgs~-dg--~I~iwd~~t~~~~ 916 (1178)
+|||+.|+.. ..||...||-.+..+....+ +....+ .-.+++|||++++-.+. .| .|.++|.+.+..
T Consensus 246 -----spDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~- 318 (425)
T COG0823 246 -----SPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV- 318 (425)
T ss_pred -----CCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-
Confidence 4999988755 55776555544333433322 322111 12368999999887654 34 466667766655
Q ss_pred EEecCCCCceEEEEEe-CCCeEEEEeC-CCe--EEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeC
Q 001042 917 EELKGHDAQVSCVRML-SGERVLTASH-DGT--VKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGR 984 (1178)
Q Consensus 917 ~~l~~h~~~V~~l~~~-~~~~l~sgs~-dg~--V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~ 984 (1178)
..+....+.-..-.|+ ++++++..+. +|. |.+.|+.++...+.+ ........-.+.++++.+...+.
T Consensus 319 ~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~l-t~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 319 TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRIL-TSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEc-cccccCCCCCcCCCCceEEEecc
Confidence 3333233322255666 7777776654 344 666666665543333 22333344566777776655443
No 396
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.03 E-value=0.17 Score=58.58 Aligned_cols=139 Identities=13% Similarity=0.143 Sum_probs=94.7
Q ss_pred EEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCE-------EEEEeCCCcEEEEECCCCceEEEEEecccC
Q 001042 1018 TVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRG-------IITGSSDGLLRFWENDDGGIKCVKNVTIHS 1090 (1178)
Q Consensus 1018 ~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~-------L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~ 1090 (1178)
.+.++.....++-.|++.|+.+..+.-+.. |+-+.+.|+.+. -+.|-+|..|.-||.+-.....+...++|.
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 455666677899999999999999997776 777778876542 234557888999998744322233333332
Q ss_pred C----cEEEE-ecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeC
Q 001042 1091 S----AILSI-NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGR 1165 (1178)
Q Consensus 1091 ~----~i~~i-s~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~ 1165 (1178)
- ...|+ .....++|+||.+|.|++||.- ++ +....+.+-..+|..|..+.||++|+..+
T Consensus 427 y~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri-~~--------------~AKTAlPgLG~~I~hVdvtadGKwil~Tc- 490 (644)
T KOG2395|consen 427 YSTKNNFSCFATTESGYIVVGSLKGDIRLYDRI-GR--------------RAKTALPGLGDAIKHVDVTADGKWILATC- 490 (644)
T ss_pred cccccccceeeecCCceEEEeecCCcEEeehhh-hh--------------hhhhcccccCCceeeEEeeccCcEEEEec-
Confidence 1 12333 3456689999999999999973 21 22233456677899999999999987655
Q ss_pred CCcEEEEE
Q 001042 1166 NGLLRLWE 1173 (1178)
Q Consensus 1166 Dg~V~IWd 1173 (1178)
+..+.+-+
T Consensus 491 ~tyLlLi~ 498 (644)
T KOG2395|consen 491 KTYLLLID 498 (644)
T ss_pred ccEEEEEE
Confidence 44554444
No 397
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.02 E-value=0.078 Score=66.01 Aligned_cols=98 Identities=14% Similarity=0.341 Sum_probs=74.1
Q ss_pred CCeEEEEeCCCeEEEEeCCCCeE-EEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEE
Q 001042 934 GERVLTASHDGTVKMWDVRTDTC-VATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSI 1012 (1178)
Q Consensus 934 ~~~l~sgs~dg~V~iwd~~~~~~-~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l 1012 (1178)
+..++.|+..|.+-..|..+.-. ...-....++|++++|+.+|..++.|-.+|.|.+||+..++.++.+..+..+.+.+
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v 178 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV 178 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence 45588888889888888765311 12222346789999999999999999999999999999999999888777766655
Q ss_pred EE----cCC-EEEEEeCCCcEEEEEc
Q 001042 1013 RM----DRD-TVITGSDDWTARMWSI 1033 (1178)
Q Consensus 1013 ~~----~~~-~l~sgs~dg~I~iwd~ 1033 (1178)
-+ +++ .++++...|. +|.+
T Consensus 179 i~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 179 IFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEeCCCcEEEEccCCCc--eEEE
Confidence 44 333 5778877776 5554
No 398
>PHA03098 kelch-like protein; Provisional
Probab=96.02 E-value=0.18 Score=62.36 Aligned_cols=174 Identities=10% Similarity=0.087 Sum_probs=89.3
Q ss_pred eEEEEECCCCceEEE--EecCCccEEEEEEcCCEEEEEeCC-----CcEEEEEcCCCeeeeE--eccCCCcEEEEEEecC
Q 001042 987 VANIWDIRAGRQMHK--FLGHTKWIRSIRMDRDTVITGSDD-----WTARMWSISRGTCDAV--LACHAGPVQCVEYSSS 1057 (1178)
Q Consensus 987 ~I~lwD~~~~~~~~~--~~~~~~~v~~l~~~~~~l~sgs~d-----g~I~iwd~~~~~~~~~--~~~h~~~I~~l~~spd 1057 (1178)
.+..||..+++.... +.........+..++...+.|+.+ ..+..||..+++.... +...... .+++ .-+
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~-~~~~-~~~ 389 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN-PCVV-NVN 389 (534)
T ss_pred cEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc-ceEE-EEC
Confidence 356677666543221 111122233445566677777755 3477788776543221 1111111 1122 235
Q ss_pred CCEEEEEeCC------CcEEEEECCCCceEEEEEecccCCcEEEEecCCCEEEEEeCCC--------cEEEEEcCCCccc
Q 001042 1058 DRGIITGSSD------GLLRFWENDDGGIKCVKNVTIHSSAILSINAGDHWLGIGAADN--------SMSLFHRPQERLG 1123 (1178)
Q Consensus 1058 g~~L~sgs~D------g~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~Lasgs~Dg--------~I~iwd~~~~~~~ 1123 (1178)
++..+.||.+ +.+..||..+.++..............++..++...+.|+.++ .+.+||..+.
T Consensus 390 ~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~--- 466 (534)
T PHA03098 390 NLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTN--- 466 (534)
T ss_pred CEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCC---
Confidence 6677777632 3588899888766554433322222233445677777776432 3777787643
Q ss_pred cccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCC
Q 001042 1124 GFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRN-----GLLRLWEATIN 1177 (1178)
Q Consensus 1124 ~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~D-----g~V~IWdv~tg 1177 (1178)
.|...............+. .+++.++.||.+ ..|.++|..++
T Consensus 467 ----------~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 467 ----------KWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred ----------ceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 3443322211111111222 277777888764 46888888765
No 399
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.02 E-value=0.24 Score=46.07 Aligned_cols=99 Identities=13% Similarity=0.115 Sum_probs=66.6
Q ss_pred EEEEEEeC---CC-CEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEE-cCCEEEEEeCCCcEEEEEcCCCeeeeE
Q 001042 967 VLCMEYDD---ST-GILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM-DRDTVITGSDDWTARMWSISRGTCDAV 1041 (1178)
Q Consensus 967 I~~l~~sp---~~-~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~ 1041 (1178)
|+++++.. +| +.|++|+.|..|++|+- .+.+..+.. .+.|+++.. .+..++.+..+|+|-+|+- ...+..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~--~~RlWR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLGGGRFAYALANGTVGVYDR--SQRLWR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcCCCEEEEEecCCEEEEEeC--cceeee
Confidence 56666654 22 57999999999999984 355666643 445666655 6679999999999999984 333444
Q ss_pred eccCCCcEEEEEEec-CC---CEEEEEeCCCcEE
Q 001042 1042 LACHAGPVQCVEYSS-SD---RGIITGSSDGLLR 1071 (1178)
Q Consensus 1042 ~~~h~~~I~~l~~sp-dg---~~L~sgs~Dg~I~ 1071 (1178)
.+. ...++++++.. ++ .-|++|-.+|.|-
T Consensus 77 iKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 IKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 443 33466665533 32 2588888888764
No 400
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.01 E-value=0.0073 Score=62.63 Aligned_cols=138 Identities=16% Similarity=0.140 Sum_probs=84.7
Q ss_pred EEEEeCCCeEEEEeCCCCeEEE-EecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceE-EEEecCCccEEEEEE
Q 001042 937 VLTASHDGTVKMWDVRTDTCVA-TVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQM-HKFLGHTKWIRSIRM 1014 (1178)
Q Consensus 937 l~sgs~dg~V~iwd~~~~~~~~-~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~-~~~~~~~~~v~~l~~ 1014 (1178)
+..-+.||.|+-++++..+.-. .-..+... ...-.-+..+++|+.+|.|.+|........ ..+......|.++-.
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip 109 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP 109 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence 5566778888888876443211 11111111 111223456899999999999997622111 111122233444333
Q ss_pred ---cCCEEEEEeCCCcEEEEEcCCCeeeeEeccCC-CcEEEEEEecCCCEEEEE--eCCCcEEEEECCC
Q 001042 1015 ---DRDTVITGSDDWTARMWSISRGTCDAVLACHA-GPVQCVEYSSSDRGIITG--SSDGLLRFWENDD 1077 (1178)
Q Consensus 1015 ---~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~-~~I~~l~~spdg~~L~sg--s~Dg~I~iwd~~~ 1077 (1178)
++.+..+++.||.|+.|++.-++.+.....|. .++.....+..++.++.+ |.|..++.|++..
T Consensus 110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 33488999999999999999888887777777 555555555566666666 6667777777653
No 401
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.97 E-value=1.2 Score=56.55 Aligned_cols=109 Identities=15% Similarity=0.118 Sum_probs=74.4
Q ss_pred CCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCC--------EEEEEEeC----------------CCCEEEEEeCCCeEE
Q 001042 934 GERVLTASHDGTVKMWDVRTDTCVATVGRCSSA--------VLCMEYDD----------------STGILAAGGRDAVAN 989 (1178)
Q Consensus 934 ~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~--------I~~l~~sp----------------~~~~l~sgs~dg~I~ 989 (1178)
++.++.++.++.|.-.|..+|+.+..+...... .+.+++.. .+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 566777788888888898888887776432210 12233321 344788899999999
Q ss_pred EEECCCCceEEEEecCCccE----------------E-EEEEcCCEEEEEeC----------CCcEEEEEcCCCeeeeEe
Q 001042 990 IWDIRAGRQMHKFLGHTKWI----------------R-SIRMDRDTVITGSD----------DWTARMWSISRGTCDAVL 1042 (1178)
Q Consensus 990 lwD~~~~~~~~~~~~~~~~v----------------~-~l~~~~~~l~sgs~----------dg~I~iwd~~~~~~~~~~ 1042 (1178)
-.|.++|+.+..+.. .+.+ + .-...++.+++|+. +|.|+-+|.++|+.+..+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999999877632 1111 1 11224556777753 688999999999998877
Q ss_pred c
Q 001042 1043 A 1043 (1178)
Q Consensus 1043 ~ 1043 (1178)
.
T Consensus 353 ~ 353 (764)
T TIGR03074 353 D 353 (764)
T ss_pred e
Confidence 5
No 402
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=95.88 E-value=3.4 Score=44.91 Aligned_cols=270 Identities=10% Similarity=0.033 Sum_probs=153.0
Q ss_pred ccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEEeCCCcEE
Q 001042 827 AGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVL 906 (1178)
Q Consensus 827 ~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sgs~dg~I~ 906 (1178)
.+-+..+.++ +++...+..+.-++|.|++..........-.-.+-..++.-.|++..++..|.-..
T Consensus 86 ~~l~~Dv~vs--------------e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfL 151 (370)
T COG5276 86 RDLFADVRVS--------------EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFL 151 (370)
T ss_pred hhhhheeEec--------------ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEE
Confidence 4456666665 56677777777799999985444333222222244557788899998888666677
Q ss_pred EEECCCC---cEEEEecCCCCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeE---EEEecCCCCCEEEEEEeCCCCEEE
Q 001042 907 VWDKQTS---QLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTC---VATVGRCSSAVLCMEYDDSTGILA 980 (1178)
Q Consensus 907 iwd~~t~---~~~~~l~~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~---~~~~~~~~~~I~~l~~sp~~~~l~ 980 (1178)
+.|+.+. +....+.......+.++. .|++-..+..|+-+.+.|+..... +... .....+.++..+++..+++
T Consensus 152 ivdvsdpssP~lagrya~~~~d~~~v~I-SGn~AYvA~~d~GL~ivDVSnp~sPvli~~~-n~g~g~~sv~vsdnr~y~v 229 (370)
T COG5276 152 IVDVSDPSSPQLAGRYALPGGDTHDVAI-SGNYAYVAWRDGGLTIVDVSNPHSPVLIGSY-NTGPGTYSVSVSDNRAYLV 229 (370)
T ss_pred EEECCCCCCceeeeeeccCCCCceeEEE-ecCeEEEEEeCCCeEEEEccCCCCCeEEEEE-ecCCceEEEEecCCeeEEE
Confidence 8888654 334455544554555655 466777788899999999976532 2222 2233678888777766655
Q ss_pred EEeCCCeEEEEECCCCceEEEEe--cC--CccEEEEEEcCCEEEEEeCCCcEEEEEcCCCeeee---EeccCCCcEEEEE
Q 001042 981 AGGRDAVANIWDIRAGRQMHKFL--GH--TKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDA---VLACHAGPVQCVE 1053 (1178)
Q Consensus 981 sgs~dg~I~lwD~~~~~~~~~~~--~~--~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~---~~~~h~~~I~~l~ 1053 (1178)
..+ .-+.+-|..+.+....+- .. ...++.+...+++......+.-+.+-|+.+..... .+......-.++.
T Consensus 230 vy~--egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ 307 (370)
T COG5276 230 VYD--EGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIR 307 (370)
T ss_pred Ecc--cceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceE
Confidence 543 346777777665433332 11 12344567788888888888778888876543211 1111111222333
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEEecCCCEEEEEeCCCcEEEEEc
Q 001042 1054 YSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHR 1117 (1178)
Q Consensus 1054 ~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~Lasgs~Dg~I~iwd~ 1117 (1178)
.+ +.++..+..+ ...+-+....+..-...-......-.+++-+.+.+.+...++.+.+|+.
T Consensus 308 ay--~~y~yiadkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 308 AY--GNYNYIADKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY 368 (370)
T ss_pred Ee--cCeeEeccCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence 32 4444444333 3344454433111000000001111233445567778888888888885
No 403
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=95.81 E-value=3.7 Score=44.69 Aligned_cols=269 Identities=11% Similarity=0.015 Sum_probs=148.5
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCcEEEEecC-CC-CceEEEEEeCCCeEEEEeCCCeEEEEeCCCCe---EEEEecC
Q 001042 888 AINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKG-HD-AQVSCVRMLSGERVLTASHDGTVKMWDVRTDT---CVATVGR 962 (1178)
Q Consensus 888 ~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~-h~-~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~---~~~~~~~ 962 (1178)
.+.-.+++...+..+.-++|.|+.+......+.. .. +.-.++. -.|++..++..|.-..+.|+.+.. .......
T Consensus 91 Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~-vsGn~aYVadlddgfLivdvsdpssP~lagrya~ 169 (370)
T COG5276 91 DVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVY-VSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYAL 169 (370)
T ss_pred eeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEE-ecCCEEEEeeccCcEEEEECCCCCCceeeeeecc
Confidence 3445677888888888899999987543322211 11 2222222 268888888866667788886543 3334433
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEE--EEecCCccEEEEEEcCCEEEEEeCCCcEEEEEcCCCeeee
Q 001042 963 CSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMH--KFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDA 1040 (1178)
Q Consensus 963 ~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~--~~~~~~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~ 1040 (1178)
.......++.| |++-..+..|+-+.+.|+.+...-. .-......+.++..++++....-.+--+.+-|..+.+...
T Consensus 170 ~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~egvlivd~s~~ssp~ 247 (370)
T COG5276 170 PGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEGVLIVDVSGPSSPT 247 (370)
T ss_pred CCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccceEEEecCCCCCce
Confidence 44444566665 5566677788899999997653221 1112233788888888876666666678888877766444
Q ss_pred EeccC-CCcEEEE-EEecCCCEEEEEeCCCcEEEEECCCCceEEE-EEecccCCcEEEEecCCCEEEEEeCCCcEEEEEc
Q 001042 1041 VLACH-AGPVQCV-EYSSSDRGIITGSSDGLLRFWENDDGGIKCV-KNVTIHSSAILSINAGDHWLGIGAADNSMSLFHR 1117 (1178)
Q Consensus 1041 ~~~~h-~~~I~~l-~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~-~~~~~h~~~i~~is~dg~~Lasgs~Dg~I~iwd~ 1117 (1178)
.+... ...+.++ .+.-.+++......+.-+.+-|+.+.....+ ..+......-..+...+.++..+..+ +..+-+.
T Consensus 248 ~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay~~y~yiadkn-~g~vV~~ 326 (370)
T COG5276 248 VFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAYGNYNYIADKN-TGAVVDA 326 (370)
T ss_pred EeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEecCeeEeccCC-ceEEEeC
Confidence 44321 1112222 2233356666555566677777765421111 11111111222333334444444443 3444444
Q ss_pred CCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001042 1118 PQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEAT 1175 (1178)
Q Consensus 1118 ~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~ 1175 (1178)
...+. .+ ...+....+.+.+.+-+.+.+.+...+|-+.||+..
T Consensus 327 s~~s~-----m~----------~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~~ 369 (370)
T COG5276 327 SPPSM-----MD----------KRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEYL 369 (370)
T ss_pred CChhh-----cc----------cccCcceEeeecceEEEeeEEEEeecCCCEEEEEec
Confidence 32211 00 011222234455555667788899999999999864
No 404
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.80 E-value=1.4 Score=49.80 Aligned_cols=128 Identities=8% Similarity=0.053 Sum_probs=85.3
Q ss_pred EEecCCCEEEEEeC---------CCcEEEEECC-CCcEEEEecCCCCceEEEEEe-CCCeEEEEeC-CCeEEEEeCCC--
Q 001042 888 AINSDRGKVVSGSD---------DQSVLVWDKQ-TSQLLEELKGHDAQVSCVRML-SGERVLTASH-DGTVKMWDVRT-- 953 (1178)
Q Consensus 888 ~~s~d~~~l~sgs~---------dg~I~iwd~~-t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~-dg~V~iwd~~~-- 953 (1178)
.+.++|.+.++... ...-.+|.+. .+..++.+..+-..-+.++|+ +++.++.+.. .+.|.-|++..
T Consensus 117 ~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~ 196 (307)
T COG3386 117 VVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPAT 196 (307)
T ss_pred eEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCccc
Confidence 35678776665433 1112455555 566767776666677899999 5656665544 57888887752
Q ss_pred C----e-EEEEecCCCCCEEEEEEeCCCCEEEEEeCCC-eEEEEECCCCceEEEEecCCccEEEEEEcC
Q 001042 954 D----T-CVATVGRCSSAVLCMEYDDSTGILAAGGRDA-VANIWDIRAGRQMHKFLGHTKWIRSIRMDR 1016 (1178)
Q Consensus 954 ~----~-~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg-~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~ 1016 (1178)
+ + .........+..-.++.+.+|.+.+++..+| .|..|+.. ++.+..+......+++++|-+
T Consensus 197 g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 197 GPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred CccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeC
Confidence 1 1 1122223345566788888998876555554 89999988 999998888878889999954
No 405
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.80 E-value=0.11 Score=59.96 Aligned_cols=138 Identities=9% Similarity=0.094 Sum_probs=96.5
Q ss_pred EEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCC-------EEEEEeCCCeEEEEECCCC-c-eEEEEecC--
Q 001042 937 VLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTG-------ILAAGGRDAVANIWDIRAG-R-QMHKFLGH-- 1005 (1178)
Q Consensus 937 l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~-------~l~sgs~dg~I~lwD~~~~-~-~~~~~~~~-- 1005 (1178)
+.++.....++-.|++.|+.+..+..+.. |.-+.+.|+.+ .-+.|-.|..|.-||.+-. + .+...++|
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy 427 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY 427 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence 34555667788899999999988876665 67777777543 2345667889999998832 2 22222222
Q ss_pred --CccEEEEEEc-CCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 001042 1006 --TKWIRSIRMD-RDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWEND 1076 (1178)
Q Consensus 1006 --~~~v~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~ 1076 (1178)
.....|.+-. ..++++||.+|.|++||--.......+.+-..+|..+..+.+|++|++.+ +..+.+.++.
T Consensus 428 ~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 428 STKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred ccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 2345566664 45999999999999999633333445677888999999999999987665 5566666643
No 406
>PHA02790 Kelch-like protein; Provisional
Probab=95.61 E-value=0.42 Score=58.09 Aligned_cols=171 Identities=9% Similarity=0.081 Sum_probs=91.4
Q ss_pred eEEEEECCCCceEEE--EecCCccEEEEEEcCCEEEEEeCC--CcEEEEEcCCCeeee--EeccCCCcEEEEEEecCCCE
Q 001042 987 VANIWDIRAGRQMHK--FLGHTKWIRSIRMDRDTVITGSDD--WTARMWSISRGTCDA--VLACHAGPVQCVEYSSSDRG 1060 (1178)
Q Consensus 987 ~I~lwD~~~~~~~~~--~~~~~~~v~~l~~~~~~l~sgs~d--g~I~iwd~~~~~~~~--~~~~h~~~I~~l~~spdg~~ 1060 (1178)
.+..||..+++.... +.........+..++...+.|+.+ ..+..||..+++... .+....... ++ ..-+|+.
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~-~~-~~~~g~I 365 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNP-AV-ASINNVI 365 (480)
T ss_pred eEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCccc-EE-EEECCEE
Confidence 466777776543221 111222233345566666777653 357888876654322 121111111 12 2335777
Q ss_pred EEEEeCCC---cEEEEECCCCceEEEEEecccCCcEEEEecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeE
Q 001042 1061 IITGSSDG---LLRFWENDDGGIKCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQL 1137 (1178)
Q Consensus 1061 L~sgs~Dg---~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~ 1137 (1178)
.+.||.++ .+..||..+..+..................+|...+.|+ .+.+||..+. .|..
T Consensus 366 YviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG---~~e~ydp~~~-------------~W~~ 429 (480)
T PHA02790 366 YVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGR---NAEFYCESSN-------------TWTL 429 (480)
T ss_pred EEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECC---ceEEecCCCC-------------cEeE
Confidence 77777553 477899888766554433322222233356777777773 5677886532 4655
Q ss_pred eeccCCCcccEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCC
Q 001042 1138 YRTPQKTVAVVRCIASDLERKRICSGGRN-----GLLRLWEATIN 1177 (1178)
Q Consensus 1138 ~~~~~~h~~~V~~lafspdg~~Las~s~D-----g~V~IWdv~tg 1177 (1178)
...+.........+ .-+|+..+.||.+ .+|..||..++
T Consensus 430 ~~~m~~~r~~~~~~--v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 430 IDDPIYPRDNPELI--IVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred cCCCCCCccccEEE--EECCEEEEECCcCCCcccceEEEEECCCC
Confidence 44332222222222 2467888888765 36888888876
No 407
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.58 E-value=0.09 Score=65.50 Aligned_cols=98 Identities=22% Similarity=0.352 Sum_probs=72.0
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceE--EEecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEE
Q 001042 851 AGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSC 928 (1178)
Q Consensus 851 ~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~--~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~ 928 (1178)
+..++.|++.|.|-..|+..+ -.....-..-.++|+ +++.+|..++.|-.+|.|.+||...++.++.+..|..+.+.
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcc-cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 667889999999998886521 111122222344565 56899999999999999999999999999999888877776
Q ss_pred EEEe----CCCeEEEEeCCCeEEEEeC
Q 001042 929 VRML----SGERVLTASHDGTVKMWDV 951 (1178)
Q Consensus 929 l~~~----~~~~l~sgs~dg~V~iwd~ 951 (1178)
+-+. .+..++++...|. +|.+
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 6554 4556788887775 5654
No 408
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.57 E-value=0.026 Score=58.73 Aligned_cols=138 Identities=13% Similarity=0.180 Sum_probs=79.1
Q ss_pred EEEEeCCCcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEEeCCCcEEEEECCCC-cEEEEecCCCCceEEEEEe
Q 001042 854 FISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTS-QLLEELKGHDAQVSCVRML 932 (1178)
Q Consensus 854 Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sgs~dg~I~iwd~~t~-~~~~~l~~h~~~V~~l~~~ 932 (1178)
+...+.||.|+-+++....... +.-.-|... ..+..-+..+++|+.+|.|.+|+..-. ........-...|.++.-.
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~-rse~~~~e~-~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~ 110 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESC-RSERFIDEG-QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPN 110 (238)
T ss_pred hccccCCcccccchhhhhhhhh-hhhhhhhcc-eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecccc
Confidence 4455678888888765221111 111112222 334455678999999999999998732 1111122223334343333
Q ss_pred --CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCC-CCEEEEEEeCCCCEEEEE--eCCCeEEEEEC
Q 001042 933 --SGERVLTASHDGTVKMWDVRTDTCVATVGRCS-SAVLCMEYDDSTGILAAG--GRDAVANIWDI 993 (1178)
Q Consensus 933 --~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~-~~I~~l~~sp~~~~l~sg--s~dg~I~lwD~ 993 (1178)
++.+..+++.||.|+.|++.-++.+.....|. ..+.....+..++.++.+ +.|..++.|++
T Consensus 111 ~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~v 176 (238)
T KOG2444|consen 111 GRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNV 176 (238)
T ss_pred ccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcch
Confidence 45688899999999999999888887776666 333333333333444444 44444444444
No 409
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.53 E-value=6.9 Score=45.99 Aligned_cols=89 Identities=11% Similarity=0.212 Sum_probs=56.2
Q ss_pred ceEEEecCCCEEEEEeCCCcEEE---EECC-----CCcEEEEecC---CC--CceEEEEEe------------CCCeEEE
Q 001042 885 TVRAINSDRGKVVSGSDDQSVLV---WDKQ-----TSQLLEELKG---HD--AQVSCVRML------------SGERVLT 939 (1178)
Q Consensus 885 ~V~~~s~d~~~l~sgs~dg~I~i---wd~~-----t~~~~~~l~~---h~--~~V~~l~~~------------~~~~l~s 939 (1178)
...+++++++.++.+..+..+.+ |+.. .++......+ +. ..|+++.+- +...+++
T Consensus 5 ~~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~V 84 (415)
T PF14655_consen 5 CSISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAV 84 (415)
T ss_pred ceEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEE
Confidence 34577899999999987776665 5431 1222222211 11 567776653 2356889
Q ss_pred EeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeC
Q 001042 940 ASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDD 974 (1178)
Q Consensus 940 gs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp 974 (1178)
|..+|.|++|.- +|..+..-..|..+|..+....
T Consensus 85 G~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 85 GTSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred EecccEEEEEec-cchHHHHHhcCccceEEEEecc
Confidence 999999999986 5655554445677777776643
No 410
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.51 E-value=0.068 Score=62.98 Aligned_cols=93 Identities=15% Similarity=0.178 Sum_probs=74.8
Q ss_pred CCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEE-EEEEeCCCCEEEEEeCCCeEEEEECCCCceEE
Q 001042 923 DAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVL-CMEYDDSTGILAAGGRDAVANIWDIRAGRQMH 1000 (1178)
Q Consensus 923 ~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~-~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~ 1000 (1178)
...+.-+.|+ .-+.+|++..+|.|.+..+. .+.+.++..+...++ +++|.|||+.+++|-.||+|++.|+.++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3456778888 46789999999999999887 777888876776776 99999999999999999999999999988776
Q ss_pred EE-ecCCccEEEEEEcC
Q 001042 1001 KF-LGHTKWIRSIRMDR 1016 (1178)
Q Consensus 1001 ~~-~~~~~~v~~l~~~~ 1016 (1178)
.. ......|.++-|++
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 63 23445666666653
No 411
>PHA02790 Kelch-like protein; Provisional
Probab=95.50 E-value=0.37 Score=58.58 Aligned_cols=169 Identities=9% Similarity=0.061 Sum_probs=89.4
Q ss_pred eEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCC--CeEEEEECCCCceEE--EEecCCccEEEEEEcCCEEE
Q 001042 945 TVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRD--AVANIWDIRAGRQMH--KFLGHTKWIRSIRMDRDTVI 1020 (1178)
Q Consensus 945 ~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~d--g~I~lwD~~~~~~~~--~~~~~~~~v~~l~~~~~~l~ 1020 (1178)
++..||..+++....-.-...........-++...++||.+ ..+..||..+++-.. .+.........+..++...+
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYv 367 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYV 367 (480)
T ss_pred eEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEE
Confidence 46678877765433211111111111122367777777753 357888876654322 12212223334455777677
Q ss_pred EEeCCC---cEEEEEcCCCeeeeE--eccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEE
Q 001042 1021 TGSDDW---TARMWSISRGTCDAV--LACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILS 1095 (1178)
Q Consensus 1021 sgs~dg---~I~iwd~~~~~~~~~--~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~ 1095 (1178)
.|+.++ .+..||.++++.... +....... ++ ..-+|+..+.|+ .+.+||..++++..+..+.........
T Consensus 368 iGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~-~~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~~~ 442 (480)
T PHA02790 368 IGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CA-LVFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRDNPEL 442 (480)
T ss_pred ecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eE-EEECCEEEEECC---ceEEecCCCCcEeEcCCCCCCccccEE
Confidence 777553 477888876644321 11111111 22 233566666663 577899988877766555433333333
Q ss_pred EecCCCEEEEEeCC-----CcEEEEEcC
Q 001042 1096 INAGDHWLGIGAAD-----NSMSLFHRP 1118 (1178)
Q Consensus 1096 is~dg~~Lasgs~D-----g~I~iwd~~ 1118 (1178)
...+|+..++||.+ .++..||..
T Consensus 443 ~v~~~~IYviGG~~~~~~~~~ve~Yd~~ 470 (480)
T PHA02790 443 IIVDNKLLLIGGFYRGSYIDTIEVYNNR 470 (480)
T ss_pred EEECCEEEEECCcCCCcccceEEEEECC
Confidence 45678888888754 346677765
No 412
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.38 E-value=11 Score=47.45 Aligned_cols=221 Identities=7% Similarity=0.086 Sum_probs=131.9
Q ss_pred eEEEEeCCCCeEEEEecCC----CCCEEEEEEeCC-CCEEEEEe----------CCCeEEEEECCCCceEEEEec--CCc
Q 001042 945 TVKMWDVRTDTCVATVGRC----SSAVLCMEYDDS-TGILAAGG----------RDAVANIWDIRAGRQMHKFLG--HTK 1007 (1178)
Q Consensus 945 ~V~iwd~~~~~~~~~~~~~----~~~I~~l~~sp~-~~~l~sgs----------~dg~I~lwD~~~~~~~~~~~~--~~~ 1007 (1178)
.++++|-++-+.+...... ...+.++.|..| +.++++|+ ..|.|.++....++.+..... -.+
T Consensus 751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~G 830 (1096)
T KOG1897|consen 751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKG 830 (1096)
T ss_pred EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecc
Confidence 3677777766655443221 123455568777 67777776 357788887776444433322 234
Q ss_pred cEEEEEE-cCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCC--CceEEEE
Q 001042 1008 WIRSIRM-DRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDD--GGIKCVK 1084 (1178)
Q Consensus 1008 ~v~~l~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~--~~~~~~~ 1084 (1178)
.+.++.. ++.++|. -+..|++|++.+++.++.-..+..++..+...-.|..++.|..-+.+.+...+. |....+.
T Consensus 831 av~aL~~fngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evA 908 (1096)
T KOG1897|consen 831 AVYALVEFNGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVA 908 (1096)
T ss_pred ceeehhhhCCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEee
Confidence 4555543 5555544 456899999999877777778889999999999999999999888777655443 3233222
Q ss_pred EecccCCcEEEE-ecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCc----cceeEeec--cCCCcccEEEE--EEcC
Q 001042 1085 NVTIHSSAILSI-NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKM----SGWQLYRT--PQKTVAVVRCI--ASDL 1155 (1178)
Q Consensus 1085 ~~~~h~~~i~~i-s~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~----~~~~~~~~--~~~h~~~V~~l--afsp 1155 (1178)
. ..+..+.+++ --+++..+.+..+|.+.+...++.... ..+... ..|.+-.. ...|..-|..+ ..+|
T Consensus 909 r-D~~p~Wmtaveil~~d~ylgae~~gNlf~v~~d~~~~t---d~eR~~l~~~~~~hlGelvn~f~hg~lv~~~~~s~~~ 984 (1096)
T KOG1897|consen 909 R-DYNPNWMTAVEILDDDTYLGAENSGNLFTVRKDSDATT---DEERQILEEVGKFHLGELVNKFRHGSLVMQLGDSMIP 984 (1096)
T ss_pred h-hhCccceeeEEEecCceEEeecccccEEEEEecCCCCc---hhhhhcccceeeEEeccceeeeeecceEeeccccccC
Confidence 2 3466677766 356666777778888888876532110 001111 11211111 11244444441 2345
Q ss_pred CCCEEEEEeCCCcEEE
Q 001042 1156 ERKRICSGGRNGLLRL 1171 (1178)
Q Consensus 1156 dg~~Las~s~Dg~V~I 1171 (1178)
-+..+.-|..+|.|-+
T Consensus 985 ~~~~vlfgTv~GsIG~ 1000 (1096)
T KOG1897|consen 985 LEPKVLFGTVNGSIGI 1000 (1096)
T ss_pred CCCcEEEEEccceEEE
Confidence 5555777888888765
No 413
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.19 E-value=3.6 Score=44.53 Aligned_cols=218 Identities=15% Similarity=0.186 Sum_probs=123.5
Q ss_pred CCEEEEEeCCCc-EEEEcCCCCCceeeEeeccccc----ceEEEecCCCEEEEEeC-----CCcEEEEECCCC-cEEEEe
Q 001042 851 AGFFISGSTDCL-VKIWDPSLRGSELRATLKGHTR----TVRAINSDRGKVVSGSD-----DQSVLVWDKQTS-QLLEEL 919 (1178)
Q Consensus 851 ~~~Lasgs~Dg~-I~iWd~~~~~~~~~~~l~~h~~----~V~~~s~d~~~l~sgs~-----dg~I~iwd~~t~-~~~~~l 919 (1178)
..-++.+-.-|+ ..++|.+ +.....++...++ .--.+|+||.+|...-. .|.|-|||...+ +.+.++
T Consensus 80 ~ravafARrPGtf~~vfD~~--~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~ 157 (366)
T COG3490 80 PRAVAFARRPGTFAMVFDPN--GAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEF 157 (366)
T ss_pred cceEEEEecCCceEEEECCC--CCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceeccc
Confidence 444555555554 4577765 2222223322222 22258999999987644 378999998754 556788
Q ss_pred cCCCCceEEEEEe-CCCeEEEEeC------------------CCeEEEEeCCCCeEEEEec----CCCCCEEEEEEeCCC
Q 001042 920 KGHDAQVSCVRML-SGERVLTASH------------------DGTVKMWDVRTDTCVATVG----RCSSAVLCMEYDDST 976 (1178)
Q Consensus 920 ~~h~~~V~~l~~~-~~~~l~sgs~------------------dg~V~iwd~~~~~~~~~~~----~~~~~I~~l~~sp~~ 976 (1178)
..|.-.-..+.+. |+..++.+.. .-++.+.|..+|..+.+.. .+.-.|..++..+||
T Consensus 158 ~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dg 237 (366)
T COG3490 158 STHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDG 237 (366)
T ss_pred ccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCC
Confidence 8888888888888 6766665532 1124455555666554332 234568888888888
Q ss_pred CEEEEEeCCCe-----EEEEECCCCceEEEEec-------CCccEEEEEEc--CCEEEEEe-CCCcEEEEEcCCCeeeeE
Q 001042 977 GILAAGGRDAV-----ANIWDIRAGRQMHKFLG-------HTKWIRSIRMD--RDTVITGS-DDWTARMWSISRGTCDAV 1041 (1178)
Q Consensus 977 ~~l~sgs~dg~-----I~lwD~~~~~~~~~~~~-------~~~~v~~l~~~--~~~l~sgs-~dg~I~iwd~~~~~~~~~ 1041 (1178)
..++.+-..|. -.+=-...++.+.-+.. -...|-+++.+ ...++..+ ..+...+||..+|..+..
T Consensus 238 tvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~ 317 (366)
T COG3490 238 TVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSE 317 (366)
T ss_pred cEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEec
Confidence 86665533221 11111122333333221 22356677775 33444444 555678999999987654
Q ss_pred eccCCCcEEEEEEecCCCEEEEEeCCCcEEEEE
Q 001042 1042 LACHAGPVQCVEYSSSDRGIITGSSDGLLRFWE 1074 (1178)
Q Consensus 1042 ~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd 1074 (1178)
-.- .....++-. +.-++..+.+|.+.++.
T Consensus 318 a~l--~daaGva~~--~~gf~vssg~G~~~~~s 346 (366)
T COG3490 318 AAL--PDAAGVAAA--KGGFAVSSGQGRIIFYS 346 (366)
T ss_pred ccc--cccccceec--cCceEEecCCceEEecc
Confidence 321 112223322 33356666788888774
No 414
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.08 E-value=1.8 Score=46.76 Aligned_cols=227 Identities=15% Similarity=0.181 Sum_probs=126.3
Q ss_pred EEecCCCCc-ccccccc---eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceeccccccC
Q 001042 774 SMFSREASS-RSHSFSR---VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDRE 849 (1178)
Q Consensus 774 ~aFSpdg~~-las~~~d---I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~ 849 (1178)
++|+|--.. ++.+-.- ..++|.++.++...... ..-+.+-||. .| |+
T Consensus 73 i~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s-----------~~~RHfyGHG------vf------------s~ 123 (366)
T COG3490 73 IAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVS-----------QEGRHFYGHG------VF------------SP 123 (366)
T ss_pred eecCCCCcceEEEEecCCceEEEECCCCCcCcEEEec-----------ccCceeeccc------cc------------CC
Confidence 577776544 3333222 77888887764322111 1223455664 24 49
Q ss_pred CCCEEEEEeCC-----CcEEEEcCCCCCceeeEeecccccceE--EEecCCCEEEEEeC------------------CCc
Q 001042 850 DAGFFISGSTD-----CLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKVVSGSD------------------DQS 904 (1178)
Q Consensus 850 d~~~Lasgs~D-----g~I~iWd~~~~~~~~~~~l~~h~~~V~--~~s~d~~~l~sgs~------------------dg~ 904 (1178)
||.+|...-.| |.|-|||.. .+...+..+..|.-.-. .+.+||+.++.+.. .-+
T Consensus 124 dG~~LYATEndfd~~rGViGvYd~r-~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePS 202 (366)
T COG3490 124 DGRLLYATENDFDPNRGVIGVYDAR-EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPS 202 (366)
T ss_pred CCcEEEeecCCCCCCCceEEEEecc-cccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCcc
Confidence 99999876443 789999987 44555556666544333 45789998887643 112
Q ss_pred EEEEECCCCcEEEE--ec--CCCCceEEEEEeCCCeEEEEeC-CCe-----EEEEeCCCCeEEEEecC-------CCCCE
Q 001042 905 VLVWDKQTSQLLEE--LK--GHDAQVSCVRMLSGERVLTASH-DGT-----VKMWDVRTDTCVATVGR-------CSSAV 967 (1178)
Q Consensus 905 I~iwd~~t~~~~~~--l~--~h~~~V~~l~~~~~~~l~sgs~-dg~-----V~iwd~~~~~~~~~~~~-------~~~~I 967 (1178)
+.+.|..+|+.+.. +. .+...|..++...+..++.|+. .|. -.+=....++.+..+.. ....|
T Consensus 203 lvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYi 282 (366)
T COG3490 203 LVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYI 282 (366)
T ss_pred EEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhh
Confidence 33444445544432 22 2344566666654444444431 110 11111123333333322 13456
Q ss_pred EEEEEeCCCCEEEEEe-CCCeEEEEECCCCceEEEEecCCccEEEEEEcCCEEEEEeCCCcEEEEE
Q 001042 968 LCMEYDDSTGILAAGG-RDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWS 1032 (1178)
Q Consensus 968 ~~l~~sp~~~~l~sgs-~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~~l~sgs~dg~I~iwd 1032 (1178)
-+++.+.+..+++..+ ..+...+||..+|..+..-. -..+..++...+-+++.+.+|.+.++.
T Consensus 283 gsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~--l~daaGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 283 GSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAA--LPDAAGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred hheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccc--ccccccceeccCceEEecCCceEEecc
Confidence 7888887666666555 45567899999998775532 223344555666677778888888774
No 415
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.04 E-value=1.1 Score=55.46 Aligned_cols=185 Identities=15% Similarity=0.199 Sum_probs=101.6
Q ss_pred cceEEEEeeeccceeccccccCCCCEEEEEe------CCCcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEEeC
Q 001042 828 GAITALHCVTKREVWDLVGDREDAGFFISGS------TDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSD 901 (1178)
Q Consensus 828 ~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs------~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sgs~ 901 (1178)
..+.+.+.+ +||+.+|... .|+.-.||=....+ .......+....--.|++||+.+++...
T Consensus 350 ~~vsspaiS------------pdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~~~lt~g~~~t~PsWspDG~~lw~v~d 416 (591)
T PRK13616 350 GNITSAALS------------RSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VAVQVLEGHSLTRPSWSLDADAVWVVVD 416 (591)
T ss_pred cCcccceEC------------CCCCEEEEEEeecCCCCCcceEEEEEeCCC-cceeeecCCCCCCceECCCCCceEEEec
Confidence 346667776 8898887665 24444444322222 2233344443333468999888777653
Q ss_pred C------------CcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEE---EeCCCCeE-E---EEec
Q 001042 902 D------------QSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKM---WDVRTDTC-V---ATVG 961 (1178)
Q Consensus 902 d------------g~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~i---wd~~~~~~-~---~~~~ 961 (1178)
. +.+.+.+++.++... ...+.|..+.|+ +|..++... +|.|.+ -....|.. + ..+.
T Consensus 417 g~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~ 492 (591)
T PRK13616 417 GNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVG 492 (591)
T ss_pred CcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEee
Confidence 2 233333444443322 235679999999 788777655 577777 44344541 1 1121
Q ss_pred -CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC-CceEEEEec--CCccEEEEEEcCCEEEEEeCCCcEEE
Q 001042 962 -RCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRA-GRQMHKFLG--HTKWIRSIRMDRDTVITGSDDWTARM 1030 (1178)
Q Consensus 962 -~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~-~~~~~~~~~--~~~~v~~l~~~~~~l~sgs~dg~I~i 1030 (1178)
.....+.++.|..++.++ ++..++.-.+|.+.- |.....+.. ....+.+++-.++.++....+|.+.+
T Consensus 493 ~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~~iyv~~~~g~~~l 564 (591)
T PRK13616 493 PGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPSTVYVTDARAVLQL 564 (591)
T ss_pred cccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCceEEEEcCCceEEe
Confidence 223346889999998854 555555445555432 222111122 24566667666666666666664443
No 416
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.99 E-value=9.5 Score=44.39 Aligned_cols=216 Identities=13% Similarity=0.119 Sum_probs=104.4
Q ss_pred CCCEEEEEe-CCCcEEEEECCCC----cEEEEecC---CC-----CceEEEEEeCCCeEEEEe--C----CCeEEEEeCC
Q 001042 892 DRGKVVSGS-DDQSVLVWDKQTS----QLLEELKG---HD-----AQVSCVRMLSGERVLTAS--H----DGTVKMWDVR 952 (1178)
Q Consensus 892 d~~~l~sgs-~dg~I~iwd~~t~----~~~~~l~~---h~-----~~V~~l~~~~~~~l~sgs--~----dg~V~iwd~~ 952 (1178)
+.++|+..+ .++.|.|.|+.+. +..+.+.. +. .+=+.-+..+++.++++- . -|.+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456677766 6789999998743 44444432 11 111111112566777652 2 3568888888
Q ss_pred CCeEEEEecCCC---CCEEEEEEeCCCCEEEEEe--------------------CCCeEEEEECCCCceEEEEecCC--c
Q 001042 953 TDTCVATVGRCS---SAVLCMEYDDSTGILAAGG--------------------RDAVANIWDIRAGRQMHKFLGHT--K 1007 (1178)
Q Consensus 953 ~~~~~~~~~~~~---~~I~~l~~sp~~~~l~sgs--------------------~dg~I~lwD~~~~~~~~~~~~~~--~ 1007 (1178)
+.+......... ..-...-|.|..+.+++.. ....+.+||+.+.+.++++.-.. .
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 877777664432 2346778888888888763 24579999999999998886443 2
Q ss_pred cEEEEEE--cCC---EEEEEeCCCcEEEEEc-CCCee----eeEecc-----------------CCCcEEEEEEecCCCE
Q 001042 1008 WIRSIRM--DRD---TVITGSDDWTARMWSI-SRGTC----DAVLAC-----------------HAGPVQCVEYSSSDRG 1060 (1178)
Q Consensus 1008 ~v~~l~~--~~~---~l~sgs~dg~I~iwd~-~~~~~----~~~~~~-----------------h~~~I~~l~~spdg~~ 1060 (1178)
....+.| +++ -++.+...++|..|-- ..++. +..+.. -..-|+.+..|.|.++
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf 325 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF 325 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence 3556666 443 2333334445554433 34322 111211 0234799999999999
Q ss_pred EEEEe-CCCcEEEEECCCC-ceEEEEEec-cc-----------------CCcEEEEecCCCEEEEEe
Q 001042 1061 IITGS-SDGLLRFWENDDG-GIKCVKNVT-IH-----------------SSAILSINAGDHWLGIGA 1107 (1178)
Q Consensus 1061 L~sgs-~Dg~I~iwd~~~~-~~~~~~~~~-~h-----------------~~~i~~is~dg~~Lasgs 1107 (1178)
|..+. .+|.|+.||+.+. ..+.+.++. +. ......+|.||+.|...+
T Consensus 326 LYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 326 LYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp EEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 87666 7999999999875 233333221 11 113456788888877654
No 417
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.80 E-value=0.11 Score=61.27 Aligned_cols=92 Identities=11% Similarity=0.110 Sum_probs=76.7
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEE-EEEE--cCCEEEEEeCCCcEEEEEcCCCeeee
Q 001042 964 SSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIR-SIRM--DRDTVITGSDDWTARMWSISRGTCDA 1040 (1178)
Q Consensus 964 ~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~-~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~ 1040 (1178)
...+.-+.|+|.-..+|.+..+|.+.+..+. .+.+.++..+...++ +++| +|+.++.|-.||+|++.|+.++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 4567889999999999999999999999887 778888876777777 9999 66799999999999999999998776
Q ss_pred Eec-cCCCcEEEEEEec
Q 001042 1041 VLA-CHAGPVQCVEYSS 1056 (1178)
Q Consensus 1041 ~~~-~h~~~I~~l~~sp 1056 (1178)
... .-...|.++-|++
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 632 2355788888863
No 418
>PRK10115 protease 2; Provisional
Probab=94.58 E-value=19 Score=45.90 Aligned_cols=234 Identities=10% Similarity=0.006 Sum_probs=113.9
Q ss_pred cceEEEEecCCCCcccccccc-------eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccce
Q 001042 769 RSWVQSMFSREASSRSHSFSR-------VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREV 841 (1178)
Q Consensus 769 ~~i~~~aFSpdg~~las~~~d-------I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~ 841 (1178)
-.+....+||||+++|.+.+. |++-|+.++... ...+.+- -..++|+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l------------------~~~i~~~---~~~~~w~----- 180 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWY------------------PELLDNV---EPSFVWA----- 180 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCC------------------CccccCc---ceEEEEe-----
Confidence 345556899999998887543 778888766521 1111111 1457776
Q ss_pred eccccccCCCCEEEEEeCC------CcEEEEcCCCCCceeeEeeccccc--ceEEE-ecCCCEEEEEeC---CCcEEEEE
Q 001042 842 WDLVGDREDAGFFISGSTD------CLVKIWDPSLRGSELRATLKGHTR--TVRAI-NSDRGKVVSGSD---DQSVLVWD 909 (1178)
Q Consensus 842 ~~~~~~s~d~~~Lasgs~D------g~I~iWd~~~~~~~~~~~l~~h~~--~V~~~-s~d~~~l~sgs~---dg~I~iwd 909 (1178)
+|++.|+.+..+ ..|+.|++.+...+-...+..... .+... +.++++++..+. ++.+.+|+
T Consensus 181 -------~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~ 253 (686)
T PRK10115 181 -------NDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLD 253 (686)
T ss_pred -------eCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEE
Confidence 677766554432 357777876442233233333222 22233 447887665433 45788888
Q ss_pred CC--CCcEEEEecCCCCceEEEEEeCCCeEEEEeC----CCeEEEEeCC-CCeEEEEecCC-CCCEEEEEEeCCCCEEEE
Q 001042 910 KQ--TSQLLEELKGHDAQVSCVRMLSGERVLTASH----DGTVKMWDVR-TDTCVATVGRC-SSAVLCMEYDDSTGILAA 981 (1178)
Q Consensus 910 ~~--t~~~~~~l~~h~~~V~~l~~~~~~~l~sgs~----dg~V~iwd~~-~~~~~~~~~~~-~~~I~~l~~sp~~~~l~s 981 (1178)
.. ++.....+....+....+. +.++.+..-+. ...|...++. .++....+... ...+..+.+. .+..+++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~ 331 (686)
T PRK10115 254 AELADAEPFVFLPRRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVE 331 (686)
T ss_pred CcCCCCCceEEEECCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEE
Confidence 43 3442222222222223332 32344443332 2234444554 22222222222 2367778887 3355556
Q ss_pred EeCCCeEEEEECCC-CceEEEEe-cCCccEEEEEE----cCC-EEEEEe---CCCcEEEEEcCCCe
Q 001042 982 GGRDAVANIWDIRA-GRQMHKFL-GHTKWIRSIRM----DRD-TVITGS---DDWTARMWSISRGT 1037 (1178)
Q Consensus 982 gs~dg~I~lwD~~~-~~~~~~~~-~~~~~v~~l~~----~~~-~l~sgs---~dg~I~iwd~~~~~ 1037 (1178)
...+|.-+++-+.. +..+..+. .....+..+.. +.+ .+++.+ .-+.+..+|..+++
T Consensus 332 ~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 332 ERQRGLTSLRQINRKTREVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEeCCEEEEEEEcCCCCceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 66677655544332 22333332 22222322222 222 333333 34668888887764
No 419
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.53 E-value=3.5 Score=43.28 Aligned_cols=127 Identities=13% Similarity=0.057 Sum_probs=80.8
Q ss_pred EEecCCCEEEEEeC----------CCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCC-eEEEEeCCCeEEEEe--CCC
Q 001042 888 AINSDRGKVVSGSD----------DQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGE-RVLTASHDGTVKMWD--VRT 953 (1178)
Q Consensus 888 ~~s~d~~~l~sgs~----------dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~-~l~sgs~dg~V~iwd--~~~ 953 (1178)
.++|+|++.+ |.. .|.++.|-.. ..+..+...-.--+.++|. +.. ..++-+.+-+|.-|| ..+
T Consensus 115 kvdP~Gryy~-GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~t 191 (310)
T KOG4499|consen 115 KVDPDGRYYG-GTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPT 191 (310)
T ss_pred ccCCCCceee-eeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCc
Confidence 3689999843 322 2334444332 1122222222334567787 333 345667788888888 555
Q ss_pred Ce-----EEEEecC----CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEcCC
Q 001042 954 DT-----CVATVGR----CSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD 1017 (1178)
Q Consensus 954 ~~-----~~~~~~~----~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~ 1017 (1178)
|. .+..++. ..-.--.++.+.+|++.++.-..|+|...|..+|+.+.++.-....|+|++|.+.
T Consensus 192 G~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 192 GDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred ccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 53 2222222 1112235666778998888889999999999999999999999999999999654
No 420
>PLN02153 epithiospecifier protein
Probab=94.49 E-value=9.5 Score=44.13 Aligned_cols=172 Identities=13% Similarity=0.107 Sum_probs=82.5
Q ss_pred CCCeEEEEeCC-------CeEEEEeCCCCeEEEEecC---CCC---CEEEEEEeCCCCEEEEEeCC-----CeEEEEECC
Q 001042 933 SGERVLTASHD-------GTVKMWDVRTDTCVATVGR---CSS---AVLCMEYDDSTGILAAGGRD-----AVANIWDIR 994 (1178)
Q Consensus 933 ~~~~l~sgs~d-------g~V~iwd~~~~~~~~~~~~---~~~---~I~~l~~sp~~~~l~sgs~d-----g~I~lwD~~ 994 (1178)
++..++.|+.+ ..+.+||..+.+-...-.. ... ....+.+ ++.+++.|+.+ ..+.+||..
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 109 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTV 109 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECC
Confidence 44555555542 3577888877653321110 111 1112222 45666777643 357889987
Q ss_pred CCceEE--EEec---CCc-cEEEEE-EcCCEEEEEeCC-----------CcEEEEEcCCCeeeeEec-----cCCCcEEE
Q 001042 995 AGRQMH--KFLG---HTK-WIRSIR-MDRDTVITGSDD-----------WTARMWSISRGTCDAVLA-----CHAGPVQC 1051 (1178)
Q Consensus 995 ~~~~~~--~~~~---~~~-~v~~l~-~~~~~l~sgs~d-----------g~I~iwd~~~~~~~~~~~-----~h~~~I~~ 1051 (1178)
+.+-.. .+.. ... .-.+++ .++...+.|+.+ ..+.+||..+.+-...-. ...... +
T Consensus 110 t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~-~ 188 (341)
T PLN02153 110 KNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGA-G 188 (341)
T ss_pred CCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcc-e
Confidence 754322 1110 111 111223 345555666643 247788887764432110 001111 2
Q ss_pred EEEecCCCEEEEEeCC-------------CcEEEEECCCCceEEEEEe---cccCCcEEEEecCCCEEEEEeC
Q 001042 1052 VEYSSSDRGIITGSSD-------------GLLRFWENDDGGIKCVKNV---TIHSSAILSINAGDHWLGIGAA 1108 (1178)
Q Consensus 1052 l~~spdg~~L~sgs~D-------------g~I~iwd~~~~~~~~~~~~---~~h~~~i~~is~dg~~Lasgs~ 1108 (1178)
++ .-++++.+.|+.+ ..+.+||..+.++..+... ........++..++++++.|+.
T Consensus 189 ~~-~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~ 260 (341)
T PLN02153 189 FA-VVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGE 260 (341)
T ss_pred EE-EECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcc
Confidence 22 2346665655432 4588999988866655432 1111122333556777888775
No 421
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.28 E-value=15 Score=43.41 Aligned_cols=261 Identities=11% Similarity=0.111 Sum_probs=135.4
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCCceeeEe-e-cccccceEEE------ecCCCEEEEEeCCCcEEEEECCC--Cc----
Q 001042 849 EDAGFFISGSTDCLVKIWDPSLRGSELRAT-L-KGHTRTVRAI------NSDRGKVVSGSDDQSVLVWDKQT--SQ---- 914 (1178)
Q Consensus 849 ~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~-l-~~h~~~V~~~------s~d~~~l~sgs~dg~I~iwd~~t--~~---- 914 (1178)
.+...+++||.+|.++|++....+.+.... + ..-..+|..+ +......++.-.-..+.||.+.. |.
T Consensus 35 ~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 35 SGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccC
Confidence 456799999999999999986433222111 1 1223566654 22233333335557788887621 11
Q ss_pred ---EEEEecCCCC--ceEEEE---Ee--C-CCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEe
Q 001042 915 ---LLEELKGHDA--QVSCVR---ML--S-GERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGG 983 (1178)
Q Consensus 915 ---~~~~l~~h~~--~V~~l~---~~--~-~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs 983 (1178)
.+..+..|.- ....++ |. . .+.+.+-+.||++.+++-+.-.....+.. ---...++|.+....+++++
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~s 193 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTAS 193 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEec
Confidence 1222222322 222222 22 2 46788999999999999765443344332 22224578888888899999
Q ss_pred CCCeEEEEECCCC--------------------ce---EEEEecCCccEEEEEE---cCC--EEEEEeCCCcEEEEEcCC
Q 001042 984 RDAVANIWDIRAG--------------------RQ---MHKFLGHTKWIRSIRM---DRD--TVITGSDDWTARMWSISR 1035 (1178)
Q Consensus 984 ~dg~I~lwD~~~~--------------------~~---~~~~~~~~~~v~~l~~---~~~--~l~sgs~dg~I~iwd~~~ 1035 (1178)
.+..+..|....- +. -.++ .-...+..+.. ++. .+++-+ ..++.+.+- +
T Consensus 194 ss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~-nlGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~-~ 270 (418)
T PF14727_consen 194 SSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSF-NLGEQALDIQVVRFSSSESDIVVLG-ERSLFCLKD-N 270 (418)
T ss_pred CceeEEEecHHHhhhccccccccccccccccccccccceeEE-ECCceeEEEEEEEcCCCCceEEEEe-cceEEEEcC-C
Confidence 8888888875311 00 0011 01122333322 111 222222 334555553 4
Q ss_pred CeeeeEeccCCCcEEEE-EEe----cCC---CEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE-----ecCCCE
Q 001042 1036 GTCDAVLACHAGPVQCV-EYS----SSD---RGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI-----NAGDHW 1102 (1178)
Q Consensus 1036 ~~~~~~~~~h~~~I~~l-~~s----pdg---~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i-----s~dg~~ 1102 (1178)
|......+ ......|+ .|. .++ ..++.++.++++.||.=.+ .+........+| ++ ..-...
T Consensus 271 G~l~~~kr-Ld~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~----L~WsA~l~~~PV-al~v~~~~~~~G~ 344 (418)
T PF14727_consen 271 GSLRFQKR-LDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTT----LVWSAQLPHVPV-ALSVANFNGLKGL 344 (418)
T ss_pred CeEEEEEe-cCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCe----EEEecCCCCCCE-EEEecccCCCCce
Confidence 54333322 22222222 221 122 2488888999999985332 222222222332 33 223567
Q ss_pred EEEEeCCCcEEEEEcCC
Q 001042 1103 LGIGAADNSMSLFHRPQ 1119 (1178)
Q Consensus 1103 Lasgs~Dg~I~iwd~~~ 1119 (1178)
+++-+.+|.+.+-=+-+
T Consensus 345 IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 345 IVSLSDEGQLSVSYLGT 361 (418)
T ss_pred EEEEcCCCcEEEEEeCC
Confidence 77888889988876654
No 422
>PRK13616 lipoprotein LpqB; Provisional
Probab=94.27 E-value=2.5 Score=52.46 Aligned_cols=180 Identities=9% Similarity=0.054 Sum_probs=94.1
Q ss_pred CceEEEEEe-CCCeEEEEe------CCC--eEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCC---------
Q 001042 924 AQVSCVRML-SGERVLTAS------HDG--TVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRD--------- 985 (1178)
Q Consensus 924 ~~V~~l~~~-~~~~l~sgs------~dg--~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~d--------- 985 (1178)
..+...+.+ +++.++... .|+ .+.+++. .+.......+ .....-.|+|+|+.+++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecC--CCCCCceECCCCCceEEEecCcceEEEecc
Confidence 456777777 666665444 243 4555554 2322222222 237888999998888776533
Q ss_pred ---CeEEEEECCCCceEEEEecCCccEEEEEEc--CCEEEEEeCCCcEEE---EEcCCCee-e---eEec-cCCCcEEEE
Q 001042 986 ---AVANIWDIRAGRQMHKFLGHTKWIRSIRMD--RDTVITGSDDWTARM---WSISRGTC-D---AVLA-CHAGPVQCV 1052 (1178)
Q Consensus 986 ---g~I~lwD~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sgs~dg~I~i---wd~~~~~~-~---~~~~-~h~~~I~~l 1052 (1178)
+.+.+.++..+.... ...+.|..+.|+ +..++... +|.|++ -....|.. + ..+. .-...+.++
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL 502 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence 223333333332221 234579999995 45666554 467777 44344431 1 1122 223346889
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecc--cCCcEEEEecCCCEEEEEeCCCcE
Q 001042 1053 EYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTI--HSSAILSINAGDHWLGIGAADNSM 1112 (1178)
Q Consensus 1053 ~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~--h~~~i~~is~dg~~Lasgs~Dg~I 1112 (1178)
.|..++..+ .+..++...+|.+.-...... .+.. ....+.++......+.....+|.+
T Consensus 503 ~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~-~~~~~n~~~~v~~vaa~~~~iyv~~~~g~~ 562 (591)
T PRK13616 503 DWRTGDSLV-VGRSDPEHPVWYVNLDGSNSD-ALPSRNLSAPVVAVAASPSTVYVTDARAVL 562 (591)
T ss_pred eEecCCEEE-EEecCCCCceEEEecCCcccc-ccCCCCccCceEEEecCCceEEEEcCCceE
Confidence 999998854 555555555555432211111 1122 245566664444455555566633
No 423
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.16 E-value=5.5 Score=43.58 Aligned_cols=179 Identities=13% Similarity=0.196 Sum_probs=110.3
Q ss_pred EEEEcCCCCCceeeEeecccccceEE--EecCCCEEEEEeCCCcEEEEECCCCcEEEEecCC-CCceEEEEEeCCCeEEE
Q 001042 863 VKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGH-DAQVSCVRMLSGERVLT 939 (1178)
Q Consensus 863 I~iWd~~~~~~~~~~~l~~h~~~V~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h-~~~V~~l~~~~~~~l~s 939 (1178)
.-+|..+..-....+...|-...+.+ ++|+.+.|++......-.||=..+|+.+.++.-. -.....+.|..++.++.
T Consensus 65 ~~~~l~~y~~~i~akpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi 144 (316)
T COG3204 65 IARYLLEYRARIDAKPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVI 144 (316)
T ss_pred hhhccCCceEEEeccccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEE
Confidence 55666442222222223444444554 5899999999998888888888889999887632 23345677775555554
Q ss_pred E-eCCCeEEEEeCCCCeEEEE----------ecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce---EEEEecC
Q 001042 940 A-SHDGTVKMWDVRTDTCVAT----------VGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQ---MHKFLGH 1005 (1178)
Q Consensus 940 g-s~dg~V~iwd~~~~~~~~~----------~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~---~~~~~~~ 1005 (1178)
+ -.++.+.++.+..+..+.. ....+.....++|+|..+.++.+-...-+.+|.+..+.. .+....+
T Consensus 145 ~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~ 224 (316)
T COG3204 145 VDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDP 224 (316)
T ss_pred EehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCc
Confidence 4 4578888877765422111 112256678999999999898888877777777654331 1111111
Q ss_pred C-------ccEEEEEEc---CCEEEEEeCCCcEEEEEcCCCeeeeEe
Q 001042 1006 T-------KWIRSIRMD---RDTVITGSDDWTARMWSISRGTCDAVL 1042 (1178)
Q Consensus 1006 ~-------~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~ 1042 (1178)
. ..+.++.++ +..++-+.+++.+.-.|.. |..+..+
T Consensus 225 ~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~l 270 (316)
T COG3204 225 TADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELL 270 (316)
T ss_pred ccccceEeeccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeE
Confidence 1 235566665 3477777788888877754 4444443
No 424
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.11 E-value=9.6 Score=44.34 Aligned_cols=146 Identities=14% Similarity=0.126 Sum_probs=73.2
Q ss_pred CCCCEEEEEeC--C----CcEEEEcCCCCCceeeEeecccccceE-----EEecCCCEEEEEe-----------------
Q 001042 849 EDAGFFISGST--D----CLVKIWDPSLRGSELRATLKGHTRTVR-----AINSDRGKVVSGS----------------- 900 (1178)
Q Consensus 849 ~d~~~Lasgs~--D----g~I~iWd~~~~~~~~~~~l~~h~~~V~-----~~s~d~~~l~sgs----------------- 900 (1178)
|+|++++|+-. + |-+.+.|-+ +.+.....+....... .+.|..+.++|..
T Consensus 139 p~G~imIS~lGd~~G~g~Ggf~llD~~--tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~ 216 (461)
T PF05694_consen 139 PDGRIMISALGDADGNGPGGFVLLDGE--TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLE 216 (461)
T ss_dssp SS--EEEEEEEETTS-S--EEEEE-TT--T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHH
T ss_pred CCccEEEEeccCCCCCCCCcEEEEcCc--cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhh
Confidence 78888888632 2 456666633 3444444433222111 2366667777653
Q ss_pred ---CCCcEEEEECCCCcEEEEecCCC--CceEEEEEe-C--CCe-EEEEeCCCeEEEEeC-CCCe----EEEEecCC---
Q 001042 901 ---DDQSVLVWDKQTSQLLEELKGHD--AQVSCVRML-S--GER-VLTASHDGTVKMWDV-RTDT----CVATVGRC--- 963 (1178)
Q Consensus 901 ---~dg~I~iwd~~t~~~~~~l~~h~--~~V~~l~~~-~--~~~-l~sgs~dg~V~iwd~-~~~~----~~~~~~~~--- 963 (1178)
...++.+||+.+.+.++++.--. .....+.|. + ..+ ++.+.-.++|..|-- ..++ .+..+...
T Consensus 217 ~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~ 296 (461)
T PF05694_consen 217 AGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVE 296 (461)
T ss_dssp HH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--
T ss_pred cccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccC
Confidence 34689999999999999887443 235567776 2 222 444445555555543 3342 22222110
Q ss_pred --------------CCCEEEEEEeCCCCEEEEEe-CCCeEEEEECCCC
Q 001042 964 --------------SSAVLCMEYDDSTGILAAGG-RDAVANIWDIRAG 996 (1178)
Q Consensus 964 --------------~~~I~~l~~sp~~~~l~sgs-~dg~I~lwD~~~~ 996 (1178)
..-|+.+..|.|.++|.+.. .+|.|+.||+...
T Consensus 297 ~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 297 GWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred cccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 23478999999999988776 5899999999864
No 425
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.04 E-value=9.4 Score=40.29 Aligned_cols=203 Identities=12% Similarity=0.107 Sum_probs=109.9
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEE-EecCCCCceEEEEEe--C--CCeEEEEeCCCeEEEEeCCC--CeEEEEec----
Q 001042 893 RGKVVSGSDDQSVLVWDKQTSQLLE-ELKGHDAQVSCVRML--S--GERVLTASHDGTVKMWDVRT--DTCVATVG---- 961 (1178)
Q Consensus 893 ~~~l~sgs~dg~I~iwd~~t~~~~~-~l~~h~~~V~~l~~~--~--~~~l~sgs~dg~V~iwd~~~--~~~~~~~~---- 961 (1178)
+.++.+--..|.|.-||..+.+..+ .+.+ .++.++.+. + ....+.++..-.|.-||... .....++.
T Consensus 27 ~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~--p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~ 104 (310)
T KOG4499|consen 27 QSLLYVDIEAGEVHRYDIEQNKVYRAKIEG--PPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQP 104 (310)
T ss_pred ceEEEEEeccCceehhhhhhhheEEEEEec--CcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCc
Confidence 3455555566778889988765433 2332 223344443 2 13333444444455577332 23333321
Q ss_pred -CCCCCEEEEEEeCCCCEEEEEeCC---------CeEEEEECCCCceEEEEecCCccEEEEEEcCC---EEEEEeCCCcE
Q 001042 962 -RCSSAVLCMEYDDSTGILAAGGRD---------AVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD---TVITGSDDWTA 1028 (1178)
Q Consensus 962 -~~~~~I~~l~~sp~~~~l~sgs~d---------g~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~---~l~sgs~dg~I 1028 (1178)
..+...+.-..+|+|++.+-...| |.++.|-. +..+..+...-+--+.++|+.+ +.++-+.+-+|
T Consensus 105 d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~--~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V 182 (310)
T KOG4499|consen 105 DRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLA--GHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEV 182 (310)
T ss_pred hHHhcccccCccCCCCceeeeeeccccccccccccEEEEecc--CCCceeeehhccCCccccccccCcEEEEEccCceEE
Confidence 113455667788999984332222 33344332 1122222222233456778543 55566677788
Q ss_pred EEEE--cCCCee-----eeEecc----CCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEEe
Q 001042 1029 RMWS--ISRGTC-----DAVLAC----HAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSIN 1097 (1178)
Q Consensus 1029 ~iwd--~~~~~~-----~~~~~~----h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is 1097 (1178)
.-|| ..+|.. +..++. ..-..-.++.+.+|+..++.-..|+|...|..+| +.+..+.-....+++..
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tG--K~L~eiklPt~qitscc 260 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTG--KILLEIKLPTPQITSCC 260 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCC--cEEEEEEcCCCceEEEE
Confidence 7787 555432 222222 1112234566778998888889999999999999 55555555577777665
Q ss_pred cCCC
Q 001042 1098 AGDH 1101 (1178)
Q Consensus 1098 ~dg~ 1101 (1178)
..|.
T Consensus 261 FgGk 264 (310)
T KOG4499|consen 261 FGGK 264 (310)
T ss_pred ecCC
Confidence 4443
No 426
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=93.84 E-value=15 Score=43.05 Aligned_cols=186 Identities=20% Similarity=0.165 Sum_probs=107.3
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEecCCC--CceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCCC-CCEEE
Q 001042 893 RGKVVSGSDDQSVLVWDKQTSQLLEELKGHD--AQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCS-SAVLC 969 (1178)
Q Consensus 893 ~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~--~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~-~~I~~ 969 (1178)
+..+.++..+|.|.-.|.++++.+.....-. ..+.+-....+..++.++.+|.+..+|.++|+.+....... ..+..
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~ 147 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYAS 147 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEecCCCeEEec
Confidence 3455556778888888888888665433221 22222222235568899999999999998999888776554 11222
Q ss_pred EEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCc---cEE-EEEEcCCEEEEEeC--CCcEEEEEcCCCeeeeEec
Q 001042 970 MEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTK---WIR-SIRMDRDTVITGSD--DWTARMWSISRGTCDAVLA 1043 (1178)
Q Consensus 970 l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~---~v~-~l~~~~~~l~sgs~--dg~I~iwd~~~~~~~~~~~ 1043 (1178)
-..-.++ .+..++.+|.+...|..+++.......... .+. ........+..+.. ++.+.-.|..+|+.....+
T Consensus 148 ~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~ 226 (370)
T COG1520 148 PPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLKWSQK 226 (370)
T ss_pred CcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcEeeeee
Confidence 2222233 344444789999999998888766543221 111 11133445555555 6677777888887766633
Q ss_pred cCC----CcEEEEEEecC-----CCEEEEEeCCCcEEEEECCCCc
Q 001042 1044 CHA----GPVQCVEYSSS-----DRGIITGSSDGLLRFWENDDGG 1079 (1178)
Q Consensus 1044 ~h~----~~I~~l~~spd-----g~~L~sgs~Dg~I~iwd~~~~~ 1079 (1178)
.+. ..+........ +..+..++.+|.+...|..+++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~ 271 (370)
T COG1520 227 VSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGE 271 (370)
T ss_pred eecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCc
Confidence 111 11100000001 1224566677888888888884
No 427
>PRK13684 Ycf48-like protein; Provisional
Probab=93.80 E-value=16 Score=42.11 Aligned_cols=150 Identities=7% Similarity=-0.082 Sum_probs=75.7
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEE-ECCCCceEEE-EecCCccEEEEEEcC-CEEEEEeCCCcEEEEEcCCCeeee
Q 001042 964 SSAVLCMEYDDSTGILAAGGRDAVANIW-DIRAGRQMHK-FLGHTKWIRSIRMDR-DTVITGSDDWTARMWSISRGTCDA 1040 (1178)
Q Consensus 964 ~~~I~~l~~sp~~~~l~sgs~dg~I~lw-D~~~~~~~~~-~~~~~~~v~~l~~~~-~~l~sgs~dg~I~iwd~~~~~~~~ 1040 (1178)
...+.++.+.+++.+++++ ..|.+..- | ..++.-.. .......++++.+.+ +.++..+..|.+++=+...|..-.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWS 249 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccc
Confidence 4578899999988766555 45554432 2 12222222 223445677887743 344444566776543334443322
Q ss_pred Eecc----CCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCc-eEEEEEecccCCcEEEE-ecCCCEEEEEeCCCcEEE
Q 001042 1041 VLAC----HAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGG-IKCVKNVTIHSSAILSI-NAGDHWLGIGAADNSMSL 1114 (1178)
Q Consensus 1041 ~~~~----h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~-~~~~~~~~~h~~~i~~i-s~dg~~Lasgs~Dg~I~i 1114 (1178)
.... ....+.++.+.+++..+++ +.+|.+. ...+.|+ +........-......+ -.+++.....+..|.|--
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~ 327 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLLR 327 (334)
T ss_pred cccCCccccccceeeEEEcCCCCEEEE-cCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceEEE
Confidence 2111 1235788999988775554 4677554 4445442 12211111111223333 223334444557788877
Q ss_pred EEc
Q 001042 1115 FHR 1117 (1178)
Q Consensus 1115 wd~ 1117 (1178)
|+-
T Consensus 328 ~~~ 330 (334)
T PRK13684 328 YVG 330 (334)
T ss_pred ecC
Confidence 653
No 428
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=93.68 E-value=15 Score=41.40 Aligned_cols=270 Identities=12% Similarity=0.107 Sum_probs=119.6
Q ss_pred CCcceEEEEecCCCCcccccccceeecccccccCCCCCCCCCCCcCCcccccceEEecc-cccceEEEEeeeccceeccc
Q 001042 767 IGRSWVQSMFSREASSRSHSFSRVRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRG-HAGAITALHCVTKREVWDLV 845 (1178)
Q Consensus 767 h~~~i~~~aFSpdg~~las~~~dI~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g-H~~~V~~l~fs~~~~~~~~~ 845 (1178)
....+..++|..+.+-.++|.....+-..+.|+. +......... -.-..++|.|.
T Consensus 15 t~~~l~dV~F~d~~~G~~VG~~g~il~T~DGG~t---------------W~~~~~~~~~~~~~~l~~I~f~--------- 70 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVGAYGTILKTTDGGKT---------------WQPVSLDLDNPFDYHLNSISFD--------- 70 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEETTTEEEEESSTTSS----------------EE-----S-----EEEEEEEE---------
T ss_pred CCCceEEEEEecCCEEEEEecCCEEEEECCCCcc---------------ccccccCCCccceeeEEEEEec---------
Confidence 3567888999976777777766644444454441 1100000110 01234566664
Q ss_pred cccCCCCEEEEEeCCCcEEEEcCCCCCceeeEe-----ecccccceEEEecCCCEEEEEeCCCcEEEEECCCCcE-EEEe
Q 001042 846 GDREDAGFFISGSTDCLVKIWDPSLRGSELRAT-----LKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQL-LEEL 919 (1178)
Q Consensus 846 ~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~-----l~~h~~~V~~~s~d~~~l~sgs~dg~I~iwd~~t~~~-~~~l 919 (1178)
. ...+++ +..|.|.--. + .+...... +.+....+.++.. .....++..|.|.. ..+.|+. ....
T Consensus 71 ---~-~~g~iv-G~~g~ll~T~-D-gG~tW~~v~l~~~lpgs~~~i~~l~~--~~~~l~~~~G~iy~-T~DgG~tW~~~~ 140 (302)
T PF14870_consen 71 ---G-NEGWIV-GEPGLLLHTT-D-GGKTWERVPLSSKLPGSPFGITALGD--GSAELAGDRGAIYR-TTDGGKTWQAVV 140 (302)
T ss_dssp ---T-TEEEEE-EETTEEEEES-S-TTSS-EE----TT-SS-EEEEEEEET--TEEEEEETT--EEE-ESSTTSSEEEEE
T ss_pred ---C-CceEEE-cCCceEEEec-C-CCCCcEEeecCCCCCCCeeEEEEcCC--CcEEEEcCCCcEEE-eCCCCCCeeEcc
Confidence 2 334444 4455433322 2 23322221 2222223333332 23333444454432 2222322 2223
Q ss_pred cCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC-CCCc
Q 001042 920 KGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDI-RAGR 997 (1178)
Q Consensus 920 ~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~-~~~~ 997 (1178)
....+.+..+.-+ ++.+++++.......-||--...-...-......|..|.|+|++...+++ ..|.|+.=+. ...+
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE 219 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence 3445667777766 55656666555555678754332222233456889999999998876654 8888888772 2222
Q ss_pred eEEE----EecCCccEEEEEEc-CCEEEEEeCCCcEEEEEcCCCeeeeEec---cCCCcEEEEEEecCCCEEEEEeCCCc
Q 001042 998 QMHK----FLGHTKWIRSIRMD-RDTVITGSDDWTARMWSISRGTCDAVLA---CHAGPVQCVEYSSSDRGIITGSSDGL 1069 (1178)
Q Consensus 998 ~~~~----~~~~~~~v~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~---~h~~~I~~l~~spdg~~L~sgs~Dg~ 1069 (1178)
.-.. .....-.+..+++. ++.+.+++..|.+. .....|+.=.... .-...++.+.|.++.+-++.| .+|.
T Consensus 220 ~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~~G~ 297 (302)
T PF14870_consen 220 TWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG-QDGV 297 (302)
T ss_dssp EE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTE
T ss_pred ccccccCCcccCceeeEEEEecCCCCEEEEeCCccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEEEC-CCcE
Confidence 2111 11122247888994 45666666777554 3445555433332 234568899998766656655 6887
Q ss_pred EEEE
Q 001042 1070 LRFW 1073 (1178)
Q Consensus 1070 I~iw 1073 (1178)
+.-|
T Consensus 298 ll~~ 301 (302)
T PF14870_consen 298 LLRY 301 (302)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6554
No 429
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=93.45 E-value=16 Score=41.12 Aligned_cols=187 Identities=13% Similarity=0.100 Sum_probs=87.7
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCcEEEEec---CCCCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeE-EEEecCC
Q 001042 888 AINSDRGKVVSGSDDQSVLVWDKQTSQLLEELK---GHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTC-VATVGRC 963 (1178)
Q Consensus 888 ~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~---~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~-~~~~~~~ 963 (1178)
++..+++....++..+. .+...+.|+.-..+. .-.+....+...++.....++..|.|..= .+.|+. .......
T Consensus 66 ~I~f~~~~g~ivG~~g~-ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~T-~DgG~tW~~~~~~~ 143 (302)
T PF14870_consen 66 SISFDGNEGWIVGEPGL-LLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYRT-TDGGKTWQAVVSET 143 (302)
T ss_dssp EEEEETTEEEEEEETTE-EEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT--EEEE-SSTTSSEEEEE-S-
T ss_pred EEEecCCceEEEcCCce-EEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEEe-CCCCCCeeEcccCC
Confidence 44433444444555553 344444444333322 11233344444444444445555654332 223332 2223445
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEcCC-EEEEEeCCCcEEEEEcC-CCeeeeE
Q 001042 964 SSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD-TVITGSDDWTARMWSIS-RGTCDAV 1041 (1178)
Q Consensus 964 ~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~-~l~sgs~dg~I~iwd~~-~~~~~~~ 1041 (1178)
...+..+..+++|++++++.......-||--...-...-+.....|.++.|+++ .+......|.|+.=+.. ..+.-..
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~ 223 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSE 223 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE--
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCcccccc
Confidence 677889999999999988877666677875432222223345678999999665 45556688888887622 1111111
Q ss_pred ----eccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 001042 1042 ----LACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDG 1078 (1178)
Q Consensus 1042 ----~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~ 1078 (1178)
.....-.+..++|.+++...++|+ .|.+ +...+.|
T Consensus 224 ~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgG 262 (302)
T PF14870_consen 224 PIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGG 262 (302)
T ss_dssp -B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTT
T ss_pred ccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCC
Confidence 111223478999999887777665 5544 4455555
No 430
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.40 E-value=9.8 Score=41.73 Aligned_cols=159 Identities=11% Similarity=0.094 Sum_probs=100.1
Q ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecC-CccEEEEEE-cCC-EEEEEeCCCcEEEEEcCCCe
Q 001042 961 GRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGH-TKWIRSIRM-DRD-TVITGSDDWTARMWSISRGT 1037 (1178)
Q Consensus 961 ~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~-~~~v~~l~~-~~~-~l~sgs~dg~I~iwd~~~~~ 1037 (1178)
.+....+.++.|+|+.+.|++......-.++=..+|+.++++.-. -...-.+.+ .++ +.++--.++.+.++.+..+.
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 344566999999999999999988888888877889888876421 122334555 233 44444467777777765542
Q ss_pred eeeE-------e---ccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCc-eEEEEEecccCCc----EEEEe-----
Q 001042 1038 CDAV-------L---ACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGG-IKCVKNVTIHSSA----ILSIN----- 1097 (1178)
Q Consensus 1038 ~~~~-------~---~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~-~~~~~~~~~h~~~----i~~is----- 1097 (1178)
.... + ...+....+++|+|.+..+..+-.-.=+.|+.+..+. .........+... +..+|
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~ 241 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN 241 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence 2211 1 1124567899999999999988887778888776432 1111111122221 22221
Q ss_pred -cCCCEEEEEeCCCcEEEEEcCC
Q 001042 1098 -AGDHWLGIGAADNSMSLFHRPQ 1119 (1178)
Q Consensus 1098 -~dg~~Lasgs~Dg~I~iwd~~~ 1119 (1178)
..+..++-+.+++.+.-.|...
T Consensus 242 ~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 242 AITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred CCCCcEEEEecCCceEEEEecCC
Confidence 3567777777777777777653
No 431
>PLN02153 epithiospecifier protein
Probab=93.19 E-value=11 Score=43.47 Aligned_cols=187 Identities=9% Similarity=0.036 Sum_probs=91.4
Q ss_pred CCCEEEEEeCC-------CcEEEEcCCCCCceeeEeecc-ccc---ceEEEecCCCEEEEEeCC-----CcEEEEECCCC
Q 001042 850 DAGFFISGSTD-------CLVKIWDPSLRGSELRATLKG-HTR---TVRAINSDRGKVVSGSDD-----QSVLVWDKQTS 913 (1178)
Q Consensus 850 d~~~Lasgs~D-------g~I~iWd~~~~~~~~~~~l~~-h~~---~V~~~s~d~~~l~sgs~d-----g~I~iwd~~t~ 913 (1178)
++++.+.|+.+ ..+.++|+............. ... ...+..-++..++.|+.+ ..+.+||..+.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~ 111 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKN 111 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCC
Confidence 35566666653 257788876332222111111 010 122334466677777653 35778888775
Q ss_pred cEEE--EecC---C-CCceEEEEEeCCCeEEEEeCC-----------CeEEEEeCCCCeEEEEecCC----CC-CEEEEE
Q 001042 914 QLLE--ELKG---H-DAQVSCVRMLSGERVLTASHD-----------GTVKMWDVRTDTCVATVGRC----SS-AVLCME 971 (1178)
Q Consensus 914 ~~~~--~l~~---h-~~~V~~l~~~~~~~l~sgs~d-----------g~V~iwd~~~~~~~~~~~~~----~~-~I~~l~ 971 (1178)
+-.. .+.. . ...-.+++..++..++.|+.+ ..+.+||..+.+-.. +... .. .-.+++
T Consensus 112 ~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~-l~~~~~~~~~r~~~~~~ 190 (341)
T PLN02153 112 EWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQ-LPDPGENFEKRGGAGFA 190 (341)
T ss_pred EEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEee-CCCCCCCCCCCCcceEE
Confidence 4322 1110 1 111223333466667777753 257788988765432 1111 11 111222
Q ss_pred EeCCCCEEEEEeCC-------------CeEEEEECCCCceEEEEe-----cCCccEEEEEEcCCEEEEEeCC--------
Q 001042 972 YDDSTGILAAGGRD-------------AVANIWDIRAGRQMHKFL-----GHTKWIRSIRMDRDTVITGSDD-------- 1025 (1178)
Q Consensus 972 ~sp~~~~l~sgs~d-------------g~I~lwD~~~~~~~~~~~-----~~~~~v~~l~~~~~~l~sgs~d-------- 1025 (1178)
. -++++++.|+.+ ..+.+||..+.+-...-. .......++.+.+..++.|+..
T Consensus 191 ~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 269 (341)
T PLN02153 191 V-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHL 269 (341)
T ss_pred E-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCcccccc
Confidence 2 255655555432 458889988765432211 1112233444566666676641
Q ss_pred ------CcEEEEEcCCCee
Q 001042 1026 ------WTARMWSISRGTC 1038 (1178)
Q Consensus 1026 ------g~I~iwd~~~~~~ 1038 (1178)
..+..+|..+.+-
T Consensus 270 ~~~~~~n~v~~~d~~~~~W 288 (341)
T PLN02153 270 GPGTLSNEGYALDTETLVW 288 (341)
T ss_pred ccccccccEEEEEcCccEE
Confidence 2577888766543
No 432
>PLN02193 nitrile-specifier protein
Probab=92.72 E-value=21 Score=43.34 Aligned_cols=191 Identities=9% Similarity=-0.010 Sum_probs=97.5
Q ss_pred cCCCEEEEEeCC-------CcEEEEECCCCcEEEEecCC---CC--c-eEEEEEeCCCeEEEEeCC-----CeEEEEeCC
Q 001042 891 SDRGKVVSGSDD-------QSVLVWDKQTSQLLEELKGH---DA--Q-VSCVRMLSGERVLTASHD-----GTVKMWDVR 952 (1178)
Q Consensus 891 ~d~~~l~sgs~d-------g~I~iwd~~t~~~~~~l~~h---~~--~-V~~l~~~~~~~l~sgs~d-----g~V~iwd~~ 952 (1178)
.++..++.|+.+ ..+.+||+.+.+-.. .... .. . -.+++..++..++.|+.+ ..+..+|+.
T Consensus 174 ~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~-~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~ 252 (470)
T PLN02193 174 VGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSI-SPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTT 252 (470)
T ss_pred ECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEe-CCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECC
Confidence 345555666643 247788887754332 1110 00 1 112333366667777654 358889988
Q ss_pred CCeEEEEecC---CCCC-EEEEEEeCCCCEEEEEeCCC-----eEEEEECCCCceEEEEe-----cCCccEEEEEEcCCE
Q 001042 953 TDTCVATVGR---CSSA-VLCMEYDDSTGILAAGGRDA-----VANIWDIRAGRQMHKFL-----GHTKWIRSIRMDRDT 1018 (1178)
Q Consensus 953 ~~~~~~~~~~---~~~~-I~~l~~sp~~~~l~sgs~dg-----~I~lwD~~~~~~~~~~~-----~~~~~v~~l~~~~~~ 1018 (1178)
+.+....-.. .... -.+++. -++++.+.|+.++ .+..||+.+.+-...-. ........+.+++..
T Consensus 253 t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gki 331 (470)
T PLN02193 253 TNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKV 331 (470)
T ss_pred CCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcE
Confidence 7654332111 1111 112222 3556667776543 46778887654322110 111122334456676
Q ss_pred EEEEeCC----CcEEEEEcCCCeeeeEecc---C-CCcEEEEEEecCCCEEEEEeCC--------------CcEEEEECC
Q 001042 1019 VITGSDD----WTARMWSISRGTCDAVLAC---H-AGPVQCVEYSSSDRGIITGSSD--------------GLLRFWEND 1076 (1178)
Q Consensus 1019 l~sgs~d----g~I~iwd~~~~~~~~~~~~---h-~~~I~~l~~spdg~~L~sgs~D--------------g~I~iwd~~ 1076 (1178)
.+.++.+ ..+.+||..+.+....-.. . .....++ ..-++++++.|+.+ +.+.++|..
T Consensus 332 yviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~ 410 (470)
T PLN02193 332 WVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFAS-AAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTE 410 (470)
T ss_pred EEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEE-EEECCEEEEECCccCCccccccCccceeccEEEEEcC
Confidence 6666655 4588999887765332111 0 1111122 22356777777743 247888988
Q ss_pred CCceEEEE
Q 001042 1077 DGGIKCVK 1084 (1178)
Q Consensus 1077 ~~~~~~~~ 1084 (1178)
+..+..+.
T Consensus 411 t~~W~~~~ 418 (470)
T PLN02193 411 TLQWERLD 418 (470)
T ss_pred cCEEEEcc
Confidence 88665544
No 433
>PLN02193 nitrile-specifier protein
Probab=92.60 E-value=21 Score=43.27 Aligned_cols=186 Identities=10% Similarity=0.037 Sum_probs=93.5
Q ss_pred CCCeEEEEeCC-------CeEEEEeCCCCeEEEEec-C-CCC--CEEEEEEeCCCCEEEEEeCC-----CeEEEEECCCC
Q 001042 933 SGERVLTASHD-------GTVKMWDVRTDTCVATVG-R-CSS--AVLCMEYDDSTGILAAGGRD-----AVANIWDIRAG 996 (1178)
Q Consensus 933 ~~~~l~sgs~d-------g~V~iwd~~~~~~~~~~~-~-~~~--~I~~l~~sp~~~~l~sgs~d-----g~I~lwD~~~~ 996 (1178)
++..++.|+.+ ..+.+||+.+.+-...-. + ... ........-++.+.+.|+.+ ..+..||+.+.
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~ 254 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTN 254 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCC
Confidence 55556666643 247788887765432110 0 011 11111122245566666654 35888998876
Q ss_pred ceEEEEec-----CCccEEEEEEcCCEEEEEeCCC-----cEEEEEcCCCeeeeEec-----cCCCcEEEEEEecCCCEE
Q 001042 997 RQMHKFLG-----HTKWIRSIRMDRDTVITGSDDW-----TARMWSISRGTCDAVLA-----CHAGPVQCVEYSSSDRGI 1061 (1178)
Q Consensus 997 ~~~~~~~~-----~~~~v~~l~~~~~~l~sgs~dg-----~I~iwd~~~~~~~~~~~-----~h~~~I~~l~~spdg~~L 1061 (1178)
+-...-.. ..........++...+.|+.++ .+..||+.+.+....-. ...... +++ .-+++..
T Consensus 255 ~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~-~~~-~~~gkiy 332 (470)
T PLN02193 255 EWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGA-GLE-VVQGKVW 332 (470)
T ss_pred EEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCc-EEE-EECCcEE
Confidence 54321111 1111222334555666666543 46778877654322110 011111 122 2256777
Q ss_pred EEEeCC----CcEEEEECCCCceEEEEEe---cccCCcEEEEecCCCEEEEEeCC--------------CcEEEEEcCCC
Q 001042 1062 ITGSSD----GLLRFWENDDGGIKCVKNV---TIHSSAILSINAGDHWLGIGAAD--------------NSMSLFHRPQE 1120 (1178)
Q Consensus 1062 ~sgs~D----g~I~iwd~~~~~~~~~~~~---~~h~~~i~~is~dg~~Lasgs~D--------------g~I~iwd~~~~ 1120 (1178)
+.|+.+ ..+.+||..+.++..+... +.......++..++++++.|+.+ +.+.++|..+.
T Consensus 333 viGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~ 412 (470)
T PLN02193 333 VVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETL 412 (470)
T ss_pred EEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcC
Confidence 777755 4588999998866555432 11111122334567777887753 24677777644
No 434
>PF07792 Afi1: Docking domain of Afi1 for Arf3 in vesicle trafficking; InterPro: IPR012860 This domain occurs at the N terminus of Afi1, a protein necessary for vesicle trafficking in yeast. This domain is the interacting region of the protein which binds to Arf3. Afi1 is distributed asymmetrically at the plasma membrane and is required for polarized distribution of Arf3 but not of an Arf3 guanine nucleotide-exchange factor, Yel1p. However, Afi1 is not required for targeting of Arf3 or Yel1p to the plasma membrane. Afi1 functions as an Arf3 polarization-specific adapter and participates in development of polarity. Although Arf3 is the homologue of human Arf6 it does not function in the same way, not being necessary for endocytosis or for mating factor receptor internalisation. In the S phase, however, it is concentrated at the plasma membrane of the emerging bud. Because of its polarized localisation and its critical function in the normal budding pattern of yeast, Arf3 is probably a regulator of vesicle trafficking, which is important for polarized growth.
Probab=92.55 E-value=0.2 Score=49.42 Aligned_cols=115 Identities=18% Similarity=0.282 Sum_probs=63.0
Q ss_pred eEEEEEeccCCCcccCCCCCCCCCCccccccccccccccCCCCCCCCCCCCCCcccCCCceEEeecCCCC---CCCCCCC
Q 001042 5 FEYFVVCGIGPEIRTLDGSKGYHGPEYYYLSSVLDQFPPLNHSLYTPPPPQLSTCVLPAGVQFYSSGFDS---DDPSTFP 81 (1178)
Q Consensus 5 ~dyfvvvG~~~~~~~~~~~~~~~~~~~~~~p~vl~~yP~~~~~~~~~~~~~v~~fc~P~g~~~~~~~~~~---~~~~~~p 81 (1178)
++|.++.-.|.+ .| |.+..+||..-... ..+..++..++|+|+..+.+.|.. .......
T Consensus 2 veyIL~AEFDid-------~G---------p~l~hQYP~~i~g~--~de~~LAelMLPDg~h~r~~DwTvFfL~~~~~~~ 63 (145)
T PF07792_consen 2 VEYILLAEFDID-------KG---------PVLKHQYPSPIPGL--EDEHMLAELMLPDGAHKRSEDWTVFFLNRDKSTE 63 (145)
T ss_pred eeEEEEEEEecC-------cC---------CEEEEeCCCCccCC--ccHHHHHHhhCCcccccccCCEEEEEEccCCCCc
Confidence 577777765554 32 67899999863321 134689999999999876644320 0000000
Q ss_pred ceeEEEE-E----------------------cCCCCeEEEEEEEecCCCCHHHHHhccCCCCccCCeEEEEEcCCChHHH
Q 001042 82 RTYPIVL-T----------------------EGDGSKIYVSCISFRDPVSEDIAEAYRIPANSFADKCICLVSRSPSFRI 138 (1178)
Q Consensus 82 ~~f~fvl-T----------------------~~~g~~~Yg~cl~f~e~~~~~~~~~~~~~~~~~~~~~icllS~~p~~~~ 138 (1178)
.+-.+-. + ..+..-.|+.+++-... ++.. + .--.-||++|.|++|||..
T Consensus 64 ~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~ly~ln~v~~k~-D~~~----r---RGA~vKa~aI~T~~~~~~i 135 (145)
T PF07792_consen 64 EFQLFKNKKSPSNSSDNNSNNIEESSNDDENQEGPPPLYVLNLVNTKH-DKTV----R---RGAVVKAMAICTRHPFFHI 135 (145)
T ss_pred hhhhccccccccccccccccccccccccccccCCCCceEEEEeecccc-Cccc----c---cccceeEEEEEcccHHHHH
Confidence 0000000 0 01123346665543211 1100 0 1123489999999999999
Q ss_pred HHHHHHH
Q 001042 139 LRNALEE 145 (1178)
Q Consensus 139 f~~~L~~ 145 (1178)
|+.+|..
T Consensus 136 fKPlL~l 142 (145)
T PF07792_consen 136 FKPLLLL 142 (145)
T ss_pred HhHHHHH
Confidence 9999874
No 435
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.28 E-value=5.8 Score=48.49 Aligned_cols=178 Identities=13% Similarity=0.087 Sum_probs=96.1
Q ss_pred CcEEEEECCCCcEEEEecCCCCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEE--e--cCCCCCEEEEEEeCCCCE
Q 001042 903 QSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVAT--V--GRCSSAVLCMEYDDSTGI 978 (1178)
Q Consensus 903 g~I~iwd~~t~~~~~~l~~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~--~--~~~~~~I~~l~~sp~~~~ 978 (1178)
-.|+|++.. |+.+..+.-..+.+..+.|+++..+++...+|++.+|++... .+.. . ......|..+.+..+|
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge-~ie~~svg~e~~~~~I~ec~~f~~G-- 139 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGE-FIESNSVGFESQMSDIVECRFFHNG-- 139 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchh-hhcccccccccccCceeEEEEecCc--
Confidence 457888864 666665554445888999999999999999999999998533 2222 1 1123345555554455
Q ss_pred EEEEeCCCeEEEEECCCCceEEEEec---CCccEEEEEE-cCC----EEEEEe-CCC-cEEEEEcCCCeeeeEeccCCCc
Q 001042 979 LAAGGRDAVANIWDIRAGRQMHKFLG---HTKWIRSIRM-DRD----TVITGS-DDW-TARMWSISRGTCDAVLACHAGP 1048 (1178)
Q Consensus 979 l~sgs~dg~I~lwD~~~~~~~~~~~~---~~~~v~~l~~-~~~----~l~sgs-~dg-~I~iwd~~~~~~~~~~~~h~~~ 1048 (1178)
+++-..+|.+.+-+-.......++.. ....-.|... .+. .++-.. ..| .+..-+..+.+. ..+....+.
T Consensus 140 Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~-~~~~~~~~~ 218 (829)
T KOG2280|consen 140 VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQL-HALSWPNSS 218 (829)
T ss_pred eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccc-cccCCCCce
Confidence 44444555555543222222222222 1111122222 221 111111 111 011111111111 122222356
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEE
Q 001042 1049 VQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKN 1085 (1178)
Q Consensus 1049 I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~ 1085 (1178)
+..+..||++++|+--..+|.|.+-+.+..+..+...
T Consensus 219 ~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 219 VVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred EEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 7889999999999999999999998887764333333
No 436
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=92.23 E-value=28 Score=40.71 Aligned_cols=152 Identities=15% Similarity=0.077 Sum_probs=94.0
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEecCCC-CceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCCC---CCE
Q 001042 892 DRGKVVSGSDDQSVLVWDKQTSQLLEELKGHD-AQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCS---SAV 967 (1178)
Q Consensus 892 d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~-~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~---~~I 967 (1178)
+| .++.++.+|.+...|..+|+.+....... ..+..-....+..+..++.+|.+...|..+|+......... ..+
T Consensus 111 ~G-~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~ 189 (370)
T COG1520 111 DG-KIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSI 189 (370)
T ss_pred CC-eEEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCcccccc
Confidence 44 48888889999999998999998887665 11111112234555566678999999999998877654322 111
Q ss_pred EEEEEeCCCCEEEEEeC--CCeEEEEECCCCceEEEEecCC----ccE-EEEEE------cCCEEEEEeCCCcEEEEEcC
Q 001042 968 LCMEYDDSTGILAAGGR--DAVANIWDIRAGRQMHKFLGHT----KWI-RSIRM------DRDTVITGSDDWTARMWSIS 1034 (1178)
Q Consensus 968 ~~l~~sp~~~~l~sgs~--dg~I~lwD~~~~~~~~~~~~~~----~~v-~~l~~------~~~~l~sgs~dg~I~iwd~~ 1034 (1178)
..-... ....+..+.. ++.+.-.|..+|......+.+. ..+ ..-.. .+..+..++.+|.+...|..
T Consensus 190 ~~~~~~-~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~ 268 (370)
T COG1520 190 YGSPAI-ASGTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDAD 268 (370)
T ss_pred ccCcee-ecceEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcC
Confidence 111112 2334445554 6678888888887766532111 111 00111 23345777888889999999
Q ss_pred CCeeeeEeccC
Q 001042 1035 RGTCDAVLACH 1045 (1178)
Q Consensus 1035 ~~~~~~~~~~h 1045 (1178)
+++.+......
T Consensus 269 ~G~~~W~~~~~ 279 (370)
T COG1520 269 TGELIWSFPAG 279 (370)
T ss_pred CCceEEEEecc
Confidence 99988887753
No 437
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=92.22 E-value=14 Score=42.21 Aligned_cols=134 Identities=13% Similarity=0.076 Sum_probs=68.1
Q ss_pred CCCEEEEEeCC-----CeEEEEECCCCceE---EEEec---CCccEEEEEEcCCEEEEEeC-----CCcEEEEEcCCCee
Q 001042 975 STGILAAGGRD-----AVANIWDIRAGRQM---HKFLG---HTKWIRSIRMDRDTVITGSD-----DWTARMWSISRGTC 1038 (1178)
Q Consensus 975 ~~~~l~sgs~d-----g~I~lwD~~~~~~~---~~~~~---~~~~v~~l~~~~~~l~sgs~-----dg~I~iwd~~~~~~ 1038 (1178)
++.+++.|+.+ ..+..+|+.+.+.. ..+.. ......+...++...+.|+. ...+..||..+.+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence 55666777654 35777787766531 22211 11122233345555566653 23588888876643
Q ss_pred eeE--eccCCCcEEEEEEecCCCEEEEEeCCC----cEEEEECCCCceEEEEEecc-c-CC---cEEEE-ecCCCEEEEE
Q 001042 1039 DAV--LACHAGPVQCVEYSSSDRGIITGSSDG----LLRFWENDDGGIKCVKNVTI-H-SS---AILSI-NAGDHWLGIG 1106 (1178)
Q Consensus 1039 ~~~--~~~h~~~I~~l~~spdg~~L~sgs~Dg----~I~iwd~~~~~~~~~~~~~~-h-~~---~i~~i-s~dg~~Lasg 1106 (1178)
... +.. .......+..-++++.+.|+.++ .+..||..+.++..+..... + .. ...++ ..++.+++.|
T Consensus 152 ~~~~~~p~-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~G 230 (323)
T TIGR03548 152 FELPDFPG-EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIG 230 (323)
T ss_pred eECCCCCC-CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEEC
Confidence 221 211 11112222334577777777654 35688988876554433211 1 00 11122 3467788888
Q ss_pred eCC
Q 001042 1107 AAD 1109 (1178)
Q Consensus 1107 s~D 1109 (1178)
+.+
T Consensus 231 G~~ 233 (323)
T TIGR03548 231 GFN 233 (323)
T ss_pred CcC
Confidence 876
No 438
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=92.18 E-value=0.41 Score=37.38 Aligned_cols=31 Identities=16% Similarity=0.247 Sum_probs=28.2
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001042 1145 VAVVRCIASDLERKRICSGGRNGLLRLWEAT 1175 (1178)
Q Consensus 1145 ~~~V~~lafspdg~~Las~s~Dg~V~IWdv~ 1175 (1178)
...|..++|+|...+||.|+.||.|.+++++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3459999999999999999999999999983
No 439
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=92.13 E-value=14 Score=42.84 Aligned_cols=181 Identities=12% Similarity=0.080 Sum_probs=86.7
Q ss_pred EEEeCCCeEEEEeCC-----------CeEEEEeCCCCeEEEEecCCCCCEEEE-EE-eCCCCEEEEEeCC----------
Q 001042 929 VRMLSGERVLTASHD-----------GTVKMWDVRTDTCVATVGRCSSAVLCM-EY-DDSTGILAAGGRD---------- 985 (1178)
Q Consensus 929 l~~~~~~~l~sgs~d-----------g~V~iwd~~~~~~~~~~~~~~~~I~~l-~~-sp~~~~l~sgs~d---------- 985 (1178)
++..++...+.|+.+ ..+..||..+++-...-.......... +. .-++++.+.|+.+
T Consensus 59 ~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~ 138 (346)
T TIGR03547 59 AAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFAD 138 (346)
T ss_pred EEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhh
Confidence 333467777777753 247778887765433211111111111 12 3467777777754
Q ss_pred -----------------------------CeEEEEECCCCceEE--EEec-CCccEEEEEEcCCEEEEEeCCC------c
Q 001042 986 -----------------------------AVANIWDIRAGRQMH--KFLG-HTKWIRSIRMDRDTVITGSDDW------T 1027 (1178)
Q Consensus 986 -----------------------------g~I~lwD~~~~~~~~--~~~~-~~~~v~~l~~~~~~l~sgs~dg------~ 1027 (1178)
..+..||..+.+-.. .+.. .......+..++...+.|+.+. .
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 218 (346)
T TIGR03547 139 LSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAE 218 (346)
T ss_pred HhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchh
Confidence 468889987754332 2211 1112223344666666666431 2
Q ss_pred EEEEEcCCC--ee--eeEecc-----CCCcEEEEEEecCCCEEEEEeCC----------------------CcEEEEECC
Q 001042 1028 ARMWSISRG--TC--DAVLAC-----HAGPVQCVEYSSSDRGIITGSSD----------------------GLLRFWEND 1076 (1178)
Q Consensus 1028 I~iwd~~~~--~~--~~~~~~-----h~~~I~~l~~spdg~~L~sgs~D----------------------g~I~iwd~~ 1076 (1178)
+..+|+... +- +..+.. +.+.....+...+++..+.|+.+ ..+.+||.+
T Consensus 219 ~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~ 298 (346)
T TIGR03547 219 VKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALD 298 (346)
T ss_pred eEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEec
Confidence 445555322 21 111111 01111111223467777777753 146688887
Q ss_pred CCceEEEEEecccCCcEEEEecCCCEEEEEeCC
Q 001042 1077 DGGIKCVKNVTIHSSAILSINAGDHWLGIGAAD 1109 (1178)
Q Consensus 1077 ~~~~~~~~~~~~h~~~i~~is~dg~~Lasgs~D 1109 (1178)
+.++..+..+........++.-++++++.|+.+
T Consensus 299 ~~~W~~~~~lp~~~~~~~~~~~~~~iyv~GG~~ 331 (346)
T TIGR03547 299 NGKWSKVGKLPQGLAYGVSVSWNNGVLLIGGEN 331 (346)
T ss_pred CCcccccCCCCCCceeeEEEEcCCEEEEEeccC
Confidence 765554443332211122234566666666654
No 440
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=91.60 E-value=12 Score=44.05 Aligned_cols=40 Identities=15% Similarity=0.069 Sum_probs=22.3
Q ss_pred EEEEECCCCceEEEEEecccCCcEEEEecCCCEEEEEeCC
Q 001042 1070 LRFWENDDGGIKCVKNVTIHSSAILSINAGDHWLGIGAAD 1109 (1178)
Q Consensus 1070 I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~Lasgs~D 1109 (1178)
+.+||..+.++..+..+........++.-++.+++.|+..
T Consensus 314 ~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCcccccCcCCCCccceEEEEeCCEEEEEcCCC
Confidence 4578888776554443332222223445667777777653
No 441
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.44 E-value=0.094 Score=63.85 Aligned_cols=208 Identities=16% Similarity=0.238 Sum_probs=115.5
Q ss_pred EecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccc-----cc---e-EE-Eec
Q 001042 822 IIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHT-----RT---V-RA-INS 891 (1178)
Q Consensus 822 ~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~-----~~---V-~~-~s~ 891 (1178)
.++|..|.|-.++|... ..|.+. -.-|.+.|||++.-.+++...+.-|. .. | +| +.+
T Consensus 127 l~kgf~G~v~dl~fah~--------~~pk~~-----~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~ 193 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHT--------KCPKGR-----RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAV 193 (1283)
T ss_pred HHhcCCCCccccccccc--------CChHHH-----HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeeccccc
Confidence 46788889999998531 123333 23367899998754444433332221 11 1 11 234
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEE
Q 001042 892 DRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCME 971 (1178)
Q Consensus 892 d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~ 971 (1178)
+..++..+-.++++++.++.+... ..+.+|..++..+++...+++...+
T Consensus 194 ~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~------------------------------ 242 (1283)
T KOG1916|consen 194 NKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLAS------------------------------ 242 (1283)
T ss_pred ccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhhee------------------------------
Confidence 556677777778888777654433 4455688888877765333322221
Q ss_pred EeCCCCEEEEEeCCCeEEEEECC-----CCceEEEEecCCc-cEEEEEEcCC-----------EEEEE-eCCCcEEEEEc
Q 001042 972 YDDSTGILAAGGRDAVANIWDIR-----AGRQMHKFLGHTK-WIRSIRMDRD-----------TVITG-SDDWTARMWSI 1033 (1178)
Q Consensus 972 ~sp~~~~l~sgs~dg~I~lwD~~-----~~~~~~~~~~~~~-~v~~l~~~~~-----------~l~sg-s~dg~I~iwd~ 1033 (1178)
.+|||..++.+..||.++.|.+. ..++++.++.|.+ +-.|.-++.+ +++++ ..+..+++|..
T Consensus 243 lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~ 322 (1283)
T KOG1916|consen 243 LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAE 322 (1283)
T ss_pred eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeec
Confidence 67788888888888877766543 3345555666653 2222223211 33443 45667999998
Q ss_pred CCCeeeeEeccCCCcEEEEEEecCCC------------EEEEEeCCCcEEEEECC
Q 001042 1034 SRGTCDAVLACHAGPVQCVEYSSSDR------------GIITGSSDGLLRFWEND 1076 (1178)
Q Consensus 1034 ~~~~~~~~~~~h~~~I~~l~~spdg~------------~L~sgs~Dg~I~iwd~~ 1076 (1178)
...+|+ +......|..+. -++|. .+++.+-++.|.+|.-.
T Consensus 323 a~w~Cl--l~~~~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~ 374 (1283)
T KOG1916|consen 323 APWQCL--LDKLIDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNR 374 (1283)
T ss_pred cchhhh--hhhcccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcc
Confidence 777776 221223333333 22222 13445667888888543
No 442
>PRK13684 Ycf48-like protein; Provisional
Probab=91.15 E-value=34 Score=39.45 Aligned_cols=149 Identities=12% Similarity=0.063 Sum_probs=84.9
Q ss_pred CCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEE-EecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEE
Q 001042 923 DAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVA-TVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHK 1001 (1178)
Q Consensus 923 ~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~-~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~ 1001 (1178)
...+.++.+.++..++..+..|.+..-.-..++... ........++++.+.++++.+++| ..|.+.+=....+..-..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~ 250 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSK 250 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcccc
Confidence 456788888766666677777765432112223222 223345678999999999877665 457665433334433222
Q ss_pred Eec----CCccEEEEEEcC-CEEEEEeCCCcEEEEEcCCCeeeeEec---cCCCcEEEEEEecCCCEEEEEeCCCcEEEE
Q 001042 1002 FLG----HTKWIRSIRMDR-DTVITGSDDWTARMWSISRGTCDAVLA---CHAGPVQCVEYSSSDRGIITGSSDGLLRFW 1073 (1178)
Q Consensus 1002 ~~~----~~~~v~~l~~~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~---~h~~~I~~l~~spdg~~L~sgs~Dg~I~iw 1073 (1178)
... ....+.++.+.+ +.++.++.+|.+.. ....++.-.... .-....+.+.|..+++.+++| ..|.|.-|
T Consensus 251 ~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~G~il~~ 328 (334)
T PRK13684 251 PIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-QRGVLLRY 328 (334)
T ss_pred ccCCccccccceeeEEEcCCCCEEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEEC-CCceEEEe
Confidence 111 123466777743 35666667776653 444444433332 122357788888777666554 67887776
Q ss_pred E
Q 001042 1074 E 1074 (1178)
Q Consensus 1074 d 1074 (1178)
+
T Consensus 329 ~ 329 (334)
T PRK13684 329 V 329 (334)
T ss_pred c
Confidence 5
No 443
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=90.99 E-value=11 Score=43.11 Aligned_cols=109 Identities=6% Similarity=0.051 Sum_probs=57.1
Q ss_pred EEEEEcCCEEEEEeCC-----CcEEEEEcCCCeee---eEeccCCCcE--EEEEEecCCCEEEEEeC-----CCcEEEEE
Q 001042 1010 RSIRMDRDTVITGSDD-----WTARMWSISRGTCD---AVLACHAGPV--QCVEYSSSDRGIITGSS-----DGLLRFWE 1074 (1178)
Q Consensus 1010 ~~l~~~~~~l~sgs~d-----g~I~iwd~~~~~~~---~~~~~h~~~I--~~l~~spdg~~L~sgs~-----Dg~I~iwd 1074 (1178)
.+++.++...+.|+.+ ..+..+|+.+.+.. ..+..-..+. .+++. -+++..+.|+. ...+..||
T Consensus 67 ~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd 145 (323)
T TIGR03548 67 ASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFN 145 (323)
T ss_pred EEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEc
Confidence 3444555666666654 34667777665431 1211111111 12222 24666666664 23588889
Q ss_pred CCCCceEEEEEeccc-CCcEEEEecCCCEEEEEeCCCc----EEEEEcCC
Q 001042 1075 NDDGGIKCVKNVTIH-SSAILSINAGDHWLGIGAADNS----MSLFHRPQ 1119 (1178)
Q Consensus 1075 ~~~~~~~~~~~~~~h-~~~i~~is~dg~~Lasgs~Dg~----I~iwd~~~ 1119 (1178)
..+.++..+..+... ......+..++++.+.|+.++. +..||..+
T Consensus 146 ~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 146 LETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred CCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCC
Confidence 888776655443321 1122233567778888876643 45677653
No 444
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.64 E-value=8.1 Score=47.34 Aligned_cols=54 Identities=11% Similarity=0.039 Sum_probs=39.7
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecC-CccEEEEEEcCC
Q 001042 964 SSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGH-TKWIRSIRMDRD 1017 (1178)
Q Consensus 964 ~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~-~~~v~~l~~~~~ 1017 (1178)
.+.+..+..||+.++|+.-+.+|.|.+-+....++...+... ......++|.++
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgn 270 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGN 270 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecC
Confidence 467888999999999999999999999998877776666422 222235566444
No 445
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=90.62 E-value=0.79 Score=35.81 Aligned_cols=34 Identities=21% Similarity=0.413 Sum_probs=29.9
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce
Q 001042 964 SSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQ 998 (1178)
Q Consensus 964 ~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~ 998 (1178)
...|.+++|+|...++|.|+.+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 457999999999999999999999999998 4443
No 446
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=90.46 E-value=15 Score=40.55 Aligned_cols=153 Identities=12% Similarity=0.041 Sum_probs=82.3
Q ss_pred cEEEEEE--cCCEEEEEe-CCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEE-CCCCceEEE
Q 001042 1008 WIRSIRM--DRDTVITGS-DDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWE-NDDGGIKCV 1083 (1178)
Q Consensus 1008 ~v~~l~~--~~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd-~~~~~~~~~ 1083 (1178)
.+.+.++ +++.++... .++.-.+|-...+....... ....++.-.|++++...+....+...+++. ..++.....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~ 103 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV 103 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeE
Confidence 4555555 455554444 23333333333333333322 233788889999987766666666667763 333432222
Q ss_pred EEe-cccCCcEEEE--ecCCCEEEEEe---CCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCC
Q 001042 1084 KNV-TIHSSAILSI--NAGDHWLGIGA---ADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLER 1157 (1178)
Q Consensus 1084 ~~~-~~h~~~i~~i--s~dg~~Lasgs---~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg 1157 (1178)
..- ..-...|.++ ||||..+|... .++.|.+--+.... .|.....-............+++++|.+++
T Consensus 104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~------~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~ 177 (253)
T PF10647_consen 104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDG------DGVPRRLTGPRRVAPPLLSDVTDVAWSDDS 177 (253)
T ss_pred EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCC------CCCcceeccceEecccccCcceeeeecCCC
Confidence 211 1111156554 99999888765 35777777665321 220110001222222335679999999999
Q ss_pred CEEEEEeCCC
Q 001042 1158 KRICSGGRNG 1167 (1178)
Q Consensus 1158 ~~Las~s~Dg 1167 (1178)
.+++.+...+
T Consensus 178 ~L~V~~~~~~ 187 (253)
T PF10647_consen 178 TLVVLGRSAG 187 (253)
T ss_pred EEEEEeCCCC
Confidence 9877765443
No 447
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=90.42 E-value=6.3 Score=48.56 Aligned_cols=117 Identities=13% Similarity=0.150 Sum_probs=75.0
Q ss_pred cEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE----ecCCCEEEEEeCCCcEEEEEcCCCccc
Q 001042 1048 PVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI----NAGDHWLGIGAADNSMSLFHRPQERLG 1123 (1178)
Q Consensus 1048 ~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i----s~dg~~Lasgs~Dg~I~iwd~~~~~~~ 1123 (1178)
..+-+.-|.-++.-++.+....+.|||...+..+....+ .....|..+ .|+|+.+.+.|-.+.|.++.-.....
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy- 108 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY- 108 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh-
Confidence 344444455566555555666899999999865555555 345667665 48999999989999999997532110
Q ss_pred cccCCCCCccceeEeecc--CCCc-ccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001042 1124 GFSGTGSKMSGWQLYRTP--QKTV-AVVRCIASDLERKRICSGGRNGLLRLWE 1173 (1178)
Q Consensus 1124 ~~~~~g~~~~~~~~~~~~--~~h~-~~V~~lafspdg~~Las~s~Dg~V~IWd 1173 (1178)
+ .....|..++.. ..|+ .+|.+..|.+||..++.+| ..+.|+|
T Consensus 109 ----~-~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~d 154 (631)
T PF12234_consen 109 ----T-NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFD 154 (631)
T ss_pred ----h-cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEEC
Confidence 1 122345444432 2333 5799999999998776553 3455544
No 448
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=90.37 E-value=44 Score=39.50 Aligned_cols=259 Identities=15% Similarity=0.170 Sum_probs=136.4
Q ss_pred CCCEEEEEeCCCcEEEEECCCCc-----EEEEecCCCCceEEEEEe-----CCCeEEEEeCCCeEEEEeCCC--Ce----
Q 001042 892 DRGKVVSGSDDQSVLVWDKQTSQ-----LLEELKGHDAQVSCVRML-----SGERVLTASHDGTVKMWDVRT--DT---- 955 (1178)
Q Consensus 892 d~~~l~sgs~dg~I~iwd~~t~~-----~~~~l~~h~~~V~~l~~~-----~~~~l~sgs~dg~V~iwd~~~--~~---- 955 (1178)
+...+++|+.+|.++||+...+. .+-+. .-..+|..+... .+...++.-.-..+.+|.+.. |.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccC
Confidence 45789999999999999985543 11121 234677777643 233344445566777777621 11
Q ss_pred ---EEEEecCC--CCCEEEEEEeC----C-CCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEE--cCCEEEEEe
Q 001042 956 ---CVATVGRC--SSAVLCMEYDD----S-TGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM--DRDTVITGS 1023 (1178)
Q Consensus 956 ---~~~~~~~~--~~~I~~l~~sp----~-~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sgs 1023 (1178)
.+..+..| ......+++-| . ...+++-+-||.+.+|+-+...-.+.+.. ---...+.+ .-+.+++++
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~s 193 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTAS 193 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEec
Confidence 11222222 22334455444 2 35788889999999999765433333322 111122333 445788888
Q ss_pred CCCcEEEEEcCC--------------------Ce---eeeEeccCCCcEEEE---EEecCCCEEEEEeCCCcEEEEECCC
Q 001042 1024 DDWTARMWSISR--------------------GT---CDAVLACHAGPVQCV---EYSSSDRGIITGSSDGLLRFWENDD 1077 (1178)
Q Consensus 1024 ~dg~I~iwd~~~--------------------~~---~~~~~~~h~~~I~~l---~~spdg~~L~sgs~Dg~I~iwd~~~ 1077 (1178)
.+..+..|.... ++ +..++. -...+..+ .++.....+++-+ ..++.+.+- +
T Consensus 194 ss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~n-lGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~-~ 270 (418)
T PF14727_consen 194 SSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFN-LGEQALDIQVVRFSSSESDIVVLG-ERSLFCLKD-N 270 (418)
T ss_pred CceeEEEecHHHhhhccccccccccccccccccccccceeEEE-CCceeEEEEEEEcCCCCceEEEEe-cceEEEEcC-C
Confidence 888888876521 00 011111 11223333 3332333344443 445666654 4
Q ss_pred CceEEEEEecccCCcEEEEe----cCC---CEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccE--
Q 001042 1078 GGIKCVKNVTIHSSAILSIN----AGD---HWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVV-- 1148 (1178)
Q Consensus 1078 ~~~~~~~~~~~h~~~i~~is----~dg---~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V-- 1148 (1178)
|.....+.+........... .++ ..+++++.++++.||.-.+. .|. .+....+|
T Consensus 271 G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L-------------~Ws----A~l~~~PVal 333 (418)
T PF14727_consen 271 GSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTL-------------VWS----AQLPHVPVAL 333 (418)
T ss_pred CeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeE-------------EEe----cCCCCCCEEE
Confidence 56666666655544443331 122 25888999999999974311 121 11112222
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEE
Q 001042 1149 RCIASDLERKRICSGGRNGLLRLW 1172 (1178)
Q Consensus 1149 ~~lafspdg~~Las~s~Dg~V~IW 1172 (1178)
.-..|..-...|++-+.+|.+.+-
T Consensus 334 ~v~~~~~~~G~IV~Ls~~G~L~v~ 357 (418)
T PF14727_consen 334 SVANFNGLKGLIVSLSDEGQLSVS 357 (418)
T ss_pred EecccCCCCceEEEEcCCCcEEEE
Confidence 222233345578888888888763
No 449
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=90.33 E-value=27 Score=41.73 Aligned_cols=302 Identities=13% Similarity=0.079 Sum_probs=143.3
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCceeeEeeccc-ccceEEEe-cCCCEEEEEeCCCcEEEEECCCCcEEEEec-CCCCceE
Q 001042 851 AGFFISGSTDCLVKIWDPSLRGSELRATLKGH-TRTVRAIN-SDRGKVVSGSDDQSVLVWDKQTSQLLEELK-GHDAQVS 927 (1178)
Q Consensus 851 ~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h-~~~V~~~s-~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~-~h~~~V~ 927 (1178)
...+..|+.|| +..+|.. ..+..+.-... ..+|.++. .-+..+.+|+.+| +.+.+.+..+...-.. -..+.|.
T Consensus 175 ~g~lWvgT~dG-L~~fd~~--~gkalql~s~~~dk~I~al~~d~qg~LWVGTdqG-v~~~e~~G~~~sn~~~~lp~~~I~ 250 (671)
T COG3292 175 NGRLWVGTPDG-LSYFDAG--RGKALQLASPPLDKAINALIADVQGRLWVGTDQG-VYLQEAEGWRASNWGPMLPSGNIL 250 (671)
T ss_pred cCcEEEecCCc-ceEEccc--cceEEEcCCCcchhhHHHHHHHhcCcEEEEeccc-eEEEchhhccccccCCCCcchhee
Confidence 34677888888 5556633 23332322222 24555543 2345678888777 6666665422211111 1233444
Q ss_pred EEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecC--CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecC
Q 001042 928 CVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGR--CSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGH 1005 (1178)
Q Consensus 928 ~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~--~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~ 1005 (1178)
.+.-.....+..|+.+|..+.---+.+-.....+. .-+.|.++..+.+|+ +-+++.+|.+++-+. .......+...
T Consensus 251 ll~qD~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv~t~~giv~~~~a-~w~~ma~in~~ 328 (671)
T COG3292 251 LLVQDAQGELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-LWVGTYGGIVRYLTA-DWKRMAVINDS 328 (671)
T ss_pred eeecccCCCEEEeecccceeEecCCCCccccccccCCccccccceeeccCCC-EeeeccCceEEEecc-hhhheeeeecC
Confidence 44433455677888877654433332222222222 234566777777776 556777766655432 22222222222
Q ss_pred CccEE---EEEE--cCCEEEEEeCCCcEEEEEcCCCeeeeEec-cCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 001042 1006 TKWIR---SIRM--DRDTVITGSDDWTARMWSISRGTCDAVLA-CHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGG 1079 (1178)
Q Consensus 1006 ~~~v~---~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~-~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~ 1079 (1178)
.+.+. .++. ....+--....|.+.+-+-.+|..+.+.. .....|+.+++..+| .+..|+..+-+..|+..+-
T Consensus 329 dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g-~lWlgs~q~GLsrl~n~n~- 406 (671)
T COG3292 329 DGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTTLEDSRG-RLWLGSMQNGLSRLDNKNE- 406 (671)
T ss_pred CCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchhhhccCC-cEEEEecccchhhhccCCc-
Confidence 12111 1111 11122222223334444444555444432 223457777777744 4666666644666776651
Q ss_pred eEEEEEecc-cCCcEEEE--ecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCC
Q 001042 1080 IKCVKNVTI-HSSAILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLE 1156 (1178)
Q Consensus 1080 ~~~~~~~~~-h~~~i~~i--s~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspd 1156 (1178)
........+ ..+.|.++ .|+++ |..|+.+|-++. +.+.++.......+ ......+.|..+...|+
T Consensus 407 ~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~-~pe~~~v~n~ln~~----------~~~l~~s~~~~lg~~~~ 474 (671)
T COG3292 407 WAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR-DPESGRVLNLLNPG----------SHGLDGSRVEQLGLGPD 474 (671)
T ss_pred ccccccccCCcccceeeeeecCCCC-EEEeccCCeEec-Cccccchhcccccc----------cCcCCcchhhhhccCCC
Confidence 122222222 34556666 56777 888888887654 33322111111011 01112234677788888
Q ss_pred CCEEEEEeCCCcEEEEEC
Q 001042 1157 RKRICSGGRNGLLRLWEA 1174 (1178)
Q Consensus 1157 g~~Las~s~Dg~V~IWdv 1174 (1178)
|++-+.++ +| |..|+.
T Consensus 475 g~Lw~a~g-~g-va~~~s 490 (671)
T COG3292 475 GRLWLAAG-SG-VAAWES 490 (671)
T ss_pred CceEEEec-ce-eeeecc
Confidence 88533222 32 355554
No 450
>PRK10115 protease 2; Provisional
Probab=90.30 E-value=64 Score=41.21 Aligned_cols=231 Identities=11% Similarity=0.008 Sum_probs=114.5
Q ss_pred CCCCEEEEEeCC-----CcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEEeCC------CcEEEEECCCC--cE
Q 001042 849 EDAGFFISGSTD-----CLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDD------QSVLVWDKQTS--QL 915 (1178)
Q Consensus 849 ~d~~~Lasgs~D-----g~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sgs~d------g~I~iwd~~t~--~~ 915 (1178)
|||++|+.+.+. ..|++-|+. .+..+...+.+-. .-.+|++|++.|+.+..+ ..|..+++.++ +-
T Consensus 136 pdg~~la~~~d~~G~E~~~l~v~d~~-tg~~l~~~i~~~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d 213 (686)
T PRK10115 136 PDNTIMALAEDFLSRRQYGIRFRNLE-TGNWYPELLDNVE-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQD 213 (686)
T ss_pred CCCCEEEEEecCCCcEEEEEEEEECC-CCCCCCccccCcc-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHC
Confidence 899988876442 357888876 2322222222222 235778888877665432 36788888887 33
Q ss_pred EEEecCCCCceE-EEEEe-CCCeEEEEeC---CCeEEEEeCC--CCeEEEEecCCCCCEEEEEEeCCCCEEEEEeC----
Q 001042 916 LEELKGHDAQVS-CVRML-SGERVLTASH---DGTVKMWDVR--TDTCVATVGRCSSAVLCMEYDDSTGILAAGGR---- 984 (1178)
Q Consensus 916 ~~~l~~h~~~V~-~l~~~-~~~~l~sgs~---dg~V~iwd~~--~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~---- 984 (1178)
...+........ .+..+ ++..++..+. ++.+.+++.. ++.....+.........+. +.. ..+..-+.
T Consensus 214 ~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~ly~~tn~~~~ 291 (686)
T PRK10115 214 ELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQ-HRFYLRSNRHGK 291 (686)
T ss_pred eEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCC-CEEEEEEcCCCC
Confidence 334443333333 22233 5665554433 4578888842 3432222222223323322 323 33333332
Q ss_pred CCeEEEEECCCCceEEEEecC-C-ccEEEEEEcCCE-EEEEeCCCcEEEEEcCC-CeeeeEec-cCCCcEEEEEEe--cC
Q 001042 985 DAVANIWDIRAGRQMHKFLGH-T-KWIRSIRMDRDT-VITGSDDWTARMWSISR-GTCDAVLA-CHAGPVQCVEYS--SS 1057 (1178)
Q Consensus 985 dg~I~lwD~~~~~~~~~~~~~-~-~~v~~l~~~~~~-l~sgs~dg~I~iwd~~~-~~~~~~~~-~h~~~I~~l~~s--pd 1057 (1178)
...|...++.+......+..+ . ..+..+.+.++. +++...+|.-+++-+.. +..+..+. .....+..+.++ ++
T Consensus 292 ~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 371 (686)
T PRK10115 292 NFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRGLTSLRQINRKTREVIGIAFDDPAYVTWIAYNPEPE 371 (686)
T ss_pred CceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEEEEEEeCCEEEEEEEcCCCCceEEecCCCCceEeeecccCCCC
Confidence 223444455422222333344 2 367788887764 55555677655554432 22333333 222233333344 33
Q ss_pred CC-EEEEEe---CCCcEEEEECCCCceEEE
Q 001042 1058 DR-GIITGS---SDGLLRFWENDDGGIKCV 1083 (1178)
Q Consensus 1058 g~-~L~sgs---~Dg~I~iwd~~~~~~~~~ 1083 (1178)
+. .+++.+ .-+.+..+|..+++...+
T Consensus 372 ~~~~~~~~ss~~~P~~~y~~d~~~~~~~~l 401 (686)
T PRK10115 372 TSRLRYGYSSMTTPDTLFELDMDTGERRVL 401 (686)
T ss_pred CceEEEEEecCCCCCEEEEEECCCCcEEEE
Confidence 33 444433 346788888887754333
No 451
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.28 E-value=7.6 Score=40.28 Aligned_cols=171 Identities=12% Similarity=-0.004 Sum_probs=94.7
Q ss_pred cCCCEEEEEeC--CCcEEEEECCCCcEEEEecCCCCceEE--EEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCC
Q 001042 891 SDRGKVVSGSD--DQSVLVWDKQTSQLLEELKGHDAQVSC--VRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSA 966 (1178)
Q Consensus 891 ~d~~~l~sgs~--dg~I~iwd~~t~~~~~~l~~h~~~V~~--l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~ 966 (1178)
-+|.++.+.+. ...|++||+.+|+.+..-+-....+.. +.-..+......-.+|.-..+|.++-+++..+. ..+.
T Consensus 54 ~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~Ge 132 (262)
T COG3823 54 LDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGE 132 (262)
T ss_pred eCCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCc
Confidence 34555555543 357999999999887765432212211 111122223344467888889988887776653 2344
Q ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEec--CCc---cEEEEEE-cCCEEEEEeCCCcEEEEEcCCCeeee
Q 001042 967 VLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLG--HTK---WIRSIRM-DRDTVITGSDDWTARMWSISRGTCDA 1040 (1178)
Q Consensus 967 I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~--~~~---~v~~l~~-~~~~l~sgs~dg~I~iwd~~~~~~~~ 1040 (1178)
=+.++. |+..|+.+.....++.-|.++.....+..- ... .++.+.| +|...+-.-.+..|...|..+|+.+.
T Consensus 133 GWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 133 GWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred ceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeeecceEEEcCCCCcEEE
Confidence 455554 444477766666787777766544333221 111 2233444 44444433344455555656665544
Q ss_pred Eec------------cCCCcEEEEEEecCCC-EEEEE
Q 001042 1041 VLA------------CHAGPVQCVEYSSSDR-GIITG 1064 (1178)
Q Consensus 1041 ~~~------------~h~~~I~~l~~spdg~-~L~sg 1064 (1178)
.+. .|.+..+.+++.|++. ++++|
T Consensus 211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 332 2455678999999874 45555
No 452
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=90.28 E-value=30 Score=40.04 Aligned_cols=55 Identities=15% Similarity=0.110 Sum_probs=28.6
Q ss_pred EecCCCEEEEEeCC-----------CcEEEEECCCCcEEEEecCCCCc---eEEEEEeCCCeEEEEeCC
Q 001042 889 INSDRGKVVSGSDD-----------QSVLVWDKQTSQLLEELKGHDAQ---VSCVRMLSGERVLTASHD 943 (1178)
Q Consensus 889 ~s~d~~~l~sgs~d-----------g~I~iwd~~t~~~~~~l~~h~~~---V~~l~~~~~~~l~sgs~d 943 (1178)
...+++..+.|+.+ ..+..||..+.+-...-...... ...+...++...+.|+.+
T Consensus 60 ~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 60 AAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred EEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 34567777777753 24777887765433221111111 112223467777777754
No 453
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.22 E-value=39 Score=39.17 Aligned_cols=152 Identities=11% Similarity=0.072 Sum_probs=95.7
Q ss_pred eEEEEEeCCCeEEEEeCCCeEEEEeCCCC---eEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce----
Q 001042 926 VSCVRMLSGERVLTASHDGTVKMWDVRTD---TCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQ---- 998 (1178)
Q Consensus 926 V~~l~~~~~~~l~sgs~dg~V~iwd~~~~---~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~---- 998 (1178)
-+.+.|.|.+..+.+...|.+.-|-+... -++..-....++|.++.||+|.+.+|+--.+..|.+++....+.
T Consensus 25 sngvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~ 104 (657)
T KOG2377|consen 25 SNGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY 104 (657)
T ss_pred ccceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence 35566666666665656666666665432 12222223567999999999999999999999999999743322
Q ss_pred EEEEecCCccEEEEEEcCC-EEEEEeCCCcEEEEEcCC-CeeeeEeccCCCcEEEEEEecCCCEEEEEe--CCCcEEEEE
Q 001042 999 MHKFLGHTKWIRSIRMDRD-TVITGSDDWTARMWSISR-GTCDAVLACHAGPVQCVEYSSSDRGIITGS--SDGLLRFWE 1074 (1178)
Q Consensus 999 ~~~~~~~~~~v~~l~~~~~-~l~sgs~dg~I~iwd~~~-~~~~~~~~~h~~~I~~l~~spdg~~L~sgs--~Dg~I~iwd 1074 (1178)
..+.+..+..|....|..+ -++..+..| +-+|.+.. ...++..+.|+..|+--.|.++.+.++-++ ..+++.=+.
T Consensus 105 ~~~ck~k~~~IlGF~W~~s~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~ 183 (657)
T KOG2377|consen 105 TQECKTKNANILGFCWTSSTEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFH 183 (657)
T ss_pred HHHhccCcceeEEEEEecCeeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEE
Confidence 2223344556888888544 455444443 55665433 334555667888899999999887654433 344444455
Q ss_pred CCCC
Q 001042 1075 NDDG 1078 (1178)
Q Consensus 1075 ~~~~ 1078 (1178)
+.++
T Consensus 184 ~~~~ 187 (657)
T KOG2377|consen 184 FRAG 187 (657)
T ss_pred Eeec
Confidence 5554
No 454
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.12 E-value=3.7 Score=42.46 Aligned_cols=122 Identities=11% Similarity=0.118 Sum_probs=75.4
Q ss_pred CCCcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEecC--CC---CceEEEEEeC
Q 001042 859 TDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKG--HD---AQVSCVRMLS 933 (1178)
Q Consensus 859 ~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~--h~---~~V~~l~~~~ 933 (1178)
.||.-..+|.+ ..+....+. ..+.=+.+..|+..|+.+....+++.-|.++.....++.. .. ..++.+.|-+
T Consensus 109 ~egvaf~~d~~--t~~~lg~~~-y~GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~Vd 185 (262)
T COG3823 109 KEGVAFKYDAD--TLEELGRFS-YEGEGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVD 185 (262)
T ss_pred ccceeEEEChH--Hhhhhcccc-cCCcceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeec
Confidence 36677777754 232222221 2233456778888888888778888878766544333221 12 2345566777
Q ss_pred CCeEEEEeCCCeEEEEeCCCCeEEEEec------------CCCCCEEEEEEeCCCCEEEEEe
Q 001042 934 GERVLTASHDGTVKMWDVRTDTCVATVG------------RCSSAVLCMEYDDSTGILAAGG 983 (1178)
Q Consensus 934 ~~~l~sgs~dg~V~iwd~~~~~~~~~~~------------~~~~~I~~l~~sp~~~~l~sgs 983 (1178)
|...+-.-.+..|...|..+|+.+..+. .+..-.+.+++.|++..++..+
T Consensus 186 G~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 186 GELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 8777766667777777888888766552 2344567899999875554443
No 455
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=89.53 E-value=46 Score=39.06 Aligned_cols=94 Identities=13% Similarity=0.068 Sum_probs=42.2
Q ss_pred CCCEEEEEeC-CCcEEEEcCCCCCcee--eEeecc-cccceEEEecCCCEEEEEeCC-----------CcEEEEECCCCc
Q 001042 850 DAGFFISGST-DCLVKIWDPSLRGSEL--RATLKG-HTRTVRAINSDRGKVVSGSDD-----------QSVLVWDKQTSQ 914 (1178)
Q Consensus 850 d~~~Lasgs~-Dg~I~iWd~~~~~~~~--~~~l~~-h~~~V~~~s~d~~~l~sgs~d-----------g~I~iwd~~t~~ 914 (1178)
++++.+.|+. +..+..+|++...... ...+.. ..........++...+.|+.+ ..+..||..+.+
T Consensus 38 ~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~ 117 (376)
T PRK14131 38 NNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNS 117 (376)
T ss_pred CCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCE
Confidence 3455554443 4456677764211111 112211 111112334566677777653 247778877654
Q ss_pred EEEEecCCCCce--EEEEE-eCCCeEEEEeCC
Q 001042 915 LLEELKGHDAQV--SCVRM-LSGERVLTASHD 943 (1178)
Q Consensus 915 ~~~~l~~h~~~V--~~l~~-~~~~~l~sgs~d 943 (1178)
-...-....... .+... .++...+.|+.+
T Consensus 118 W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 118 WQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred EEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 332111011111 12222 466777777754
No 456
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=88.98 E-value=0.23 Score=60.68 Aligned_cols=161 Identities=17% Similarity=0.199 Sum_probs=97.0
Q ss_pred ceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceeccccc
Q 001042 770 SWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGD 847 (1178)
Q Consensus 770 ~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~~ 847 (1178)
-|+++-|-+...++..+-.+ |++-.+++.. ...+++|...++.++|. ...+..+.+.
T Consensus 185 ~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~--------------------~~l~rsHs~~~~d~a~~-~~g~~~l~~l 243 (1283)
T KOG1916|consen 185 LVSWCPIAVNKVYICYGLKGGEIRLLNINRAL--------------------RSLFRSHSQRVTDMAFF-AEGVLKLASL 243 (1283)
T ss_pred eeeecccccccceeeeccCCCceeEeeechHH--------------------HHHHHhcCCCcccHHHH-hhchhhheee
Confidence 46666666666666665554 5554444332 34677899999999886 3455667788
Q ss_pred cCCCCEEEEEeCCCcEEEEcCCCCCc---eeeEeecccc-cceEEEecCC-----------CEEEEEe-CCCcEEEEECC
Q 001042 848 REDAGFFISGSTDCLVKIWDPSLRGS---ELRATLKGHT-RTVRAINSDR-----------GKVVSGS-DDQSVLVWDKQ 911 (1178)
Q Consensus 848 s~d~~~Lasgs~Dg~I~iWd~~~~~~---~~~~~l~~h~-~~V~~~s~d~-----------~~l~sgs-~dg~I~iwd~~ 911 (1178)
||||+.+|.++.||.++.|.+...+. .+....+.|. .+-.|+..+. .++++++ .+..+++|...
T Consensus 244 SpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a 323 (1283)
T KOG1916|consen 244 SPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEA 323 (1283)
T ss_pred CCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeecc
Confidence 99999999999999999998764433 2334455565 3444543221 1233433 45678899877
Q ss_pred CCcEEE--------EecCCCCceEEEEEe--CCCeEEEEeCCCeEEEEeC
Q 001042 912 TSQLLE--------ELKGHDAQVSCVRML--SGERVLTASHDGTVKMWDV 951 (1178)
Q Consensus 912 t~~~~~--------~l~~h~~~V~~l~~~--~~~~l~sgs~dg~V~iwd~ 951 (1178)
..+|.. ....|.+.|+.+... =-..++.-+.+++|.+|--
T Consensus 324 ~w~Cll~~~~d~v~iV~p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn 373 (1283)
T KOG1916|consen 324 PWQCLLDKLIDGVQIVGPHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQN 373 (1283)
T ss_pred chhhhhhhcccceEeecCCCccccchhhhHHHHHHHHHhhhHHHHHHhhc
Confidence 776651 111233333332111 0112445566888888853
No 457
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.68 E-value=4.8 Score=51.27 Aligned_cols=112 Identities=8% Similarity=0.012 Sum_probs=73.5
Q ss_pred CCEEEEEEeCCCCEEEEEe--CCCeEEEEECCCCceEE-----EEe------cCCccEEEEEEcCC---EEEEEeCCCcE
Q 001042 965 SAVLCMEYDDSTGILAAGG--RDAVANIWDIRAGRQMH-----KFL------GHTKWIRSIRMDRD---TVITGSDDWTA 1028 (1178)
Q Consensus 965 ~~I~~l~~sp~~~~l~sgs--~dg~I~lwD~~~~~~~~-----~~~------~~~~~v~~l~~~~~---~l~sgs~dg~I 1028 (1178)
..+..+...+|+...++.. .+-.|..||+++-..-. -+. .......++.|++. ..+....|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 4556666677766555444 33478999987542211 111 12234456777665 67778889999
Q ss_pred EEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 001042 1029 RMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWEND 1076 (1178)
Q Consensus 1029 ~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~ 1076 (1178)
++..+........--......++++|+|.|+.++.|-..|++.-|...
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~ 228 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS 228 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc
Confidence 988765432222211245678999999999999999999999988754
No 458
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=87.75 E-value=7 Score=46.63 Aligned_cols=148 Identities=10% Similarity=0.152 Sum_probs=82.2
Q ss_pred CccEEEEEE-cCCEEEEEe---CCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecC----CCEEEEEeCCCcEEEEECCC
Q 001042 1006 TKWIRSIRM-DRDTVITGS---DDWTARMWSISRGTCDAVLACHAGPVQCVEYSSS----DRGIITGSSDGLLRFWENDD 1077 (1178)
Q Consensus 1006 ~~~v~~l~~-~~~~l~sgs---~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd----g~~L~sgs~Dg~I~iwd~~~ 1077 (1178)
-.++..++| ||+.++-.. .+|.+++=| .+.+. .-..|.++.|.|- ...+++......|.+|.+..
T Consensus 19 iHPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viG----qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 19 IHPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIG----QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred hccccceEecCCCEEEEEeeeeeCCccccCC---ccEee----ccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 347788899 666444332 344444322 12232 3346889999885 33455556788899998762
Q ss_pred C-----ceEEEEEecc-cCCcE----EEEecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCccc
Q 001042 1078 G-----GIKCVKNVTI-HSSAI----LSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAV 1147 (1178)
Q Consensus 1078 ~-----~~~~~~~~~~-h~~~i----~~is~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~ 1147 (1178)
. ++...++... ..-++ .-++|....|++-.....-.++++.. ++. ...... ...+-
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~--------d~s-----rVkaDi-~~~G~ 157 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHC--------DSS-----RVKADI-KTSGL 157 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeee--------CCc-----eEEEec-cCCce
Confidence 2 2222222111 11111 12367778887766655445555542 111 122222 33456
Q ss_pred EEEEEEcCCCCEEEEE-eCCCcEEEEEC
Q 001042 1148 VRCIASDLERKRICSG-GRNGLLRLWEA 1174 (1178)
Q Consensus 1148 V~~lafspdg~~Las~-s~Dg~V~IWdv 1174 (1178)
|.|.+|.+||++|+.+ |..=.-+|||-
T Consensus 158 IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 158 IHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred EEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 9999999999998776 33334678874
No 459
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=87.16 E-value=6.8 Score=45.63 Aligned_cols=135 Identities=11% Similarity=0.113 Sum_probs=84.8
Q ss_pred EEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCC-------EEEEEeCCCeEEEEECCC-CceEEEEe--c--CC
Q 001042 939 TASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTG-------ILAAGGRDAVANIWDIRA-GRQMHKFL--G--HT 1006 (1178)
Q Consensus 939 sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~-------~l~sgs~dg~I~lwD~~~-~~~~~~~~--~--~~ 1006 (1178)
.|+....++-.|+..|+.+..+..+... -+.|.|+.. .-++|-++..|.-.|.+- |..+.... . ..
T Consensus 485 dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tK 562 (776)
T COG5167 485 DGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTK 562 (776)
T ss_pred cCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhcccc
Confidence 4555566777788888887777665554 456666321 233455566666667653 32222211 1 11
Q ss_pred ccEEEE-EEcCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 001042 1007 KWIRSI-RMDRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWEND 1076 (1178)
Q Consensus 1007 ~~v~~l-~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~ 1076 (1178)
....|. .-...+++++|..|.|++||--.......+.+-...|..+..+.+|+++++.+ ...+.+-|+.
T Consensus 563 n~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 563 NKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVP 632 (776)
T ss_pred ccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence 122222 22456999999999999999544344445666778899999999999987765 4456677764
No 460
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=86.69 E-value=17 Score=44.91 Aligned_cols=102 Identities=13% Similarity=0.180 Sum_probs=68.9
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCcEEEEec-CCCCceEEEEEe---CCCeEEEEeCCCeEEEEeCC-----C----CeE
Q 001042 890 NSDRGKVVSGSDDQSVLVWDKQTSQLLEELK-GHDAQVSCVRML---SGERVLTASHDGTVKMWDVR-----T----DTC 956 (1178)
Q Consensus 890 s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~-~h~~~V~~l~~~---~~~~l~sgs~dg~V~iwd~~-----~----~~~ 956 (1178)
+.-++.-++-+...++.|||...+.....-. ...+.|.++.|. +++.+++.|..+.|.++.-. . ...
T Consensus 38 ss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~ 117 (631)
T PF12234_consen 38 SSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAP 117 (631)
T ss_pred cccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccce
Confidence 3444444455556789999999887543322 457889999997 67888999999999998542 1 122
Q ss_pred EEEe--cCC-CCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 001042 957 VATV--GRC-SSAVLCMEYDDSTGILAAGGRDAVANIWDI 993 (1178)
Q Consensus 957 ~~~~--~~~-~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~ 993 (1178)
++.+ ..+ ..+|.+..|.++|..++.+| +.+.++|-
T Consensus 118 i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 118 IRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred eEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 3322 223 36788999999997665443 56888874
No 461
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=86.66 E-value=81 Score=37.95 Aligned_cols=314 Identities=12% Similarity=0.079 Sum_probs=151.7
Q ss_pred ccccCCcceEEEEecCCCCcccccccc-eeecccccccCCCCCCCCCCCcCCcccccceEEecccc-cceEEEEeeeccc
Q 001042 763 EASGIGRSWVQSMFSREASSRSHSFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHA-GAITALHCVTKRE 840 (1178)
Q Consensus 763 ~~~gh~~~i~~~aFSpdg~~las~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~-~~V~~l~fs~~~~ 840 (1178)
+..--...+.++.|...|.+.+ |..+ +..+|..+++. ++.-.+.. .+|+.+.-
T Consensus 159 r~ll~d~~V~aLv~D~~g~lWv-gT~dGL~~fd~~~gka-------------------lql~s~~~dk~I~al~~----- 213 (671)
T COG3292 159 RPLLKDTPVVALVFDANGRLWV-GTPDGLSYFDAGRGKA-------------------LQLASPPLDKAINALIA----- 213 (671)
T ss_pred cccccCccceeeeeeccCcEEE-ecCCcceEEccccceE-------------------EEcCCCcchhhHHHHHH-----
Confidence 3333456777788888885443 3444 66666665541 11111111 34444432
Q ss_pred eeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeec-ccccceEEEecCC-CEEEEEeCCCcEEEEECCCCcEEE-
Q 001042 841 VWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLK-GHTRTVRAINSDR-GKVVSGSDDQSVLVWDKQTSQLLE- 917 (1178)
Q Consensus 841 ~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~-~h~~~V~~~s~d~-~~l~sgs~dg~I~iwd~~t~~~~~- 917 (1178)
.-+..|..|+.+| |.+.+.. +........ -....|..+..|+ ..+..|+..|..+. .........
T Consensus 214 --------d~qg~LWVGTdqG-v~~~e~~--G~~~sn~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r~-~l~rq~Lq~~ 281 (671)
T COG3292 214 --------DVQGRLWVGTDQG-VYLQEAE--GWRASNWGPMLPSGNILLLVQDAQGELWIGTENGLWRT-RLPRQGLQIP 281 (671)
T ss_pred --------HhcCcEEEEeccc-eEEEchh--hccccccCCCCcchheeeeecccCCCEEEeecccceeE-ecCCCCcccc
Confidence 2245677888887 7777744 222211111 1233444443332 35666777664432 333322222
Q ss_pred EecCC--CCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCC-CEEEEEEeC--CCCEEEEEeCCCeEEEEE
Q 001042 918 ELKGH--DAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSS-AVLCMEYDD--STGILAAGGRDAVANIWD 992 (1178)
Q Consensus 918 ~l~~h--~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~-~I~~l~~sp--~~~~l~sgs~dg~I~lwD 992 (1178)
..+.| -..|.++....+..+.+++.+|.+++-+.. -.....+...++ .+-..+..| .+..+-.....|.+.+-+
T Consensus 282 ~~~~~l~~S~vnsL~~D~dGsLWv~t~~giv~~~~a~-w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van 360 (671)
T COG3292 282 LSKMHLGVSTVNSLWLDTDGSLWVGTYGGIVRYLTAD-WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVAN 360 (671)
T ss_pred ccccCCccccccceeeccCCCEeeeccCceEEEecch-hhheeeeecCCCchhhhhccCchhcccceeeccccceEEEec
Confidence 22222 233455544456668888888766655432 111111211111 111111112 222233333344555555
Q ss_pred CCCCceEEEEec-CCccEEEEEEc-CCEEEEEeCCCcEEEEEcCC-CeeeeEecc-CCCcEEEEEEecCCCEEEEEeCCC
Q 001042 993 IRAGRQMHKFLG-HTKWIRSIRMD-RDTVITGSDDWTARMWSISR-GTCDAVLAC-HAGPVQCVEYSSSDRGIITGSSDG 1068 (1178)
Q Consensus 993 ~~~~~~~~~~~~-~~~~v~~l~~~-~~~l~sgs~dg~I~iwd~~~-~~~~~~~~~-h~~~I~~l~~spdg~~L~sgs~Dg 1068 (1178)
-.+|..+..... ....|+.+.++ ...+..|+...-+..|+-++ +.......+ ..++|..+.=.|+++ |..|+.+|
T Consensus 361 ~stG~~v~sv~q~Rg~nit~~~~d~~g~lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~G 439 (671)
T COG3292 361 GSTGELVRSVHQLRGMNITTTLEDSRGRLWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGG 439 (671)
T ss_pred CCCCcEEEEeeeccccccchhhhccCCcEEEEecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCC
Confidence 566665554322 22345555553 44677777765566666555 333322222 356788888889888 88888888
Q ss_pred cEEEEECCCCceEEEEEecccCCc---E--EEEecCCCE-EEEEeCCCcEEEEEcCC
Q 001042 1069 LLRFWENDDGGIKCVKNVTIHSSA---I--LSINAGDHW-LGIGAADNSMSLFHRPQ 1119 (1178)
Q Consensus 1069 ~I~iwd~~~~~~~~~~~~~~h~~~---i--~~is~dg~~-Lasgs~Dg~I~iwd~~~ 1119 (1178)
.++. +.+.++......+..|... + ..+.++|+. +++| + .|..|+.+.
T Consensus 440 lvk~-~pe~~~v~n~ln~~~~~l~~s~~~~lg~~~~g~Lw~a~g--~-gva~~~sq~ 492 (671)
T COG3292 440 LVKR-DPESGRVLNLLNPGSHGLDGSRVEQLGLGPDGRLWLAAG--S-GVAAWESQR 492 (671)
T ss_pred eEec-CccccchhcccccccCcCCcchhhhhccCCCCceEEEec--c-eeeeecccc
Confidence 6543 3333322222233333222 2 233577764 4433 2 367777654
No 462
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=86.35 E-value=40 Score=38.75 Aligned_cols=61 Identities=7% Similarity=-0.028 Sum_probs=37.6
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEE
Q 001042 1099 GDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLR 1170 (1178)
Q Consensus 1099 dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~ 1170 (1178)
.|.++++.-..+.|....+... ..+. ............+.++++.|||.+.++.+.+|.|.
T Consensus 270 ~g~~~~~~~~~~~i~~~~~~~~---------~~~~--~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 270 RGDLFVADYGGGRIWRLDLDED---------GSVT--EEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TTEEEEEETTTTEEEEEEEETT---------EEEE--EEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cCcEEEecCCCCEEEEEeeecC---------CCcc--ceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 5566666665667766666421 1111 12222244555799999999999999988888764
No 463
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=86.27 E-value=57 Score=37.49 Aligned_cols=54 Identities=11% Similarity=0.071 Sum_probs=36.0
Q ss_pred EEEEEeCCCcEEEEEcCCCeeee---E-eccCCCcEEEEEEecCCCEEEEEeCCCcEE
Q 001042 1018 TVITGSDDWTARMWSISRGTCDA---V-LACHAGPVQCVEYSSSDRGIITGSSDGLLR 1071 (1178)
Q Consensus 1018 ~l~sgs~dg~I~iwd~~~~~~~~---~-~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~ 1071 (1178)
++++.-..+.|...++..+..+. . +......+..+++.|||.+.++.+.+|.|.
T Consensus 273 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 273 LFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp EEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred EEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 55555566788888876553322 1 233445799999999999888888888764
No 464
>PF09804 DUF2347: Uncharacterized conserved protein (DUF2347); InterPro: IPR018626 Members of this family of hypothetical proteins have no known function.
Probab=85.45 E-value=16 Score=40.63 Aligned_cols=34 Identities=29% Similarity=0.365 Sum_probs=29.5
Q ss_pred cchHHHhccCChhhHHHHHHHHhccccEEEEeCCc
Q 001042 205 ISFQPLVQLLDVDNLITLFTAVLLERRILLRSNKY 239 (1178)
Q Consensus 205 ~~~~~l~~~l~~~~~l~l~~~~L~E~~il~~s~~~ 239 (1178)
.++..+++.||+ .|..|+-++|+-+||||++.-+
T Consensus 162 ~~Lp~~l~~fGP-lIF~L~K~aLLRKRILi~~~~p 195 (280)
T PF09804_consen 162 GSLPQLLDTFGP-LIFPLWKAALLRKRILIFSPPP 195 (280)
T ss_pred HHHHHHHHHhCc-HHHHHHHHHhhcCcEEEecCCC
Confidence 468899999998 5889999999999999996553
No 465
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=85.37 E-value=72 Score=36.16 Aligned_cols=262 Identities=10% Similarity=-0.044 Sum_probs=0.0
Q ss_pred ceEEE-EecCCCCcccccccc-eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceeccccc
Q 001042 770 SWVQS-MFSREASSRSHSFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGD 847 (1178)
Q Consensus 770 ~i~~~-aFSpdg~~las~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~~ 847 (1178)
.+.+. .+.-+|++++.|.++ +.+-+.+... ..-.--.+...|+++...+
T Consensus 2 ~~~~~~~~~~~~~~lL~GTe~Gly~~~~~~~~-------------------~~~~kl~~~~~v~q~~v~~---------- 52 (302)
T smart00036 2 TAKWNHPITCDGKWLLVGTEEGLYVLNISDQP-------------------GTLEKLIGRRSVTQIWVLE---------- 52 (302)
T ss_pred CceEccccccCCcEEEEEeCCceEEEEcccCC-------------------CCeEEecCcCceEEEEEEh----------
Q ss_pred cCCCCEEEEEeCCCcEEEEcCCCCC-------------ceeeEeecccccceEEE---ecCCCEEEEEeCCCcEEEEECC
Q 001042 848 REDAGFFISGSTDCLVKIWDPSLRG-------------SELRATLKGHTRTVRAI---NSDRGKVVSGSDDQSVLVWDKQ 911 (1178)
Q Consensus 848 s~d~~~Lasgs~Dg~I~iWd~~~~~-------------~~~~~~l~~h~~~V~~~---s~d~~~l~sgs~dg~I~iwd~~ 911 (1178)
..+-+++-++....++.+++..-. .+.....-+|......+ ......++++....+|.++.+.
T Consensus 53 -~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~ 131 (302)
T smart00036 53 -ENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWY 131 (302)
T ss_pred -hhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEcc
Q ss_pred CCcEEEEecCC--------CCceEEEEEe---CCCeEEEEeCCCeEEEEeCCC--CeEEEE-----ecCCCCCEEEEEEe
Q 001042 912 TSQLLEELKGH--------DAQVSCVRML---SGERVLTASHDGTVKMWDVRT--DTCVAT-----VGRCSSAVLCMEYD 973 (1178)
Q Consensus 912 t~~~~~~l~~h--------~~~V~~l~~~---~~~~l~sgs~dg~V~iwd~~~--~~~~~~-----~~~~~~~I~~l~~s 973 (1178)
..........+ ..++..+..+ ....+..|+..+...++++.. ...... .........++.--
T Consensus 132 ~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l 211 (302)
T smart00036 132 NPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQV 211 (302)
T ss_pred ChhhhhhhhcccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEE
Q ss_pred CCCCEEEEEeCCCeEEEEECCC-CceEEEEecCCccEEEEEEcCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEE
Q 001042 974 DSTGILAAGGRDAVANIWDIRA-GRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCV 1052 (1178)
Q Consensus 974 p~~~~l~sgs~dg~I~lwD~~~-~~~~~~~~~~~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l 1052 (1178)
+++.++++ .|......|... .......-.-.....++++...+++.-+.++ |.++++.+++.++++.........+
T Consensus 212 ~~~e~Llc--~~~~~v~Vn~~G~~~~r~~~l~w~~~p~~~~~~~pyll~~~~~~-ievr~l~~~~l~q~i~~~~~~~~r~ 288 (302)
T smart00036 212 PRDEFLLC--YDEFGVFVNLYGKRRSRNPILHWEFMPESFAYHSPYLLAFHDNG-IEIRSIKTGELLQELADRETRKIRL 288 (302)
T ss_pred CCCeEEEE--ECcEEEEEeCCCCccccceEEEcCCcccEEEEECCEEEEEcCCc-EEEEECCCCceEEEEecCCCcceEE
Q ss_pred EEecCCCEEEEE
Q 001042 1053 EYSSSDRGIITG 1064 (1178)
Q Consensus 1053 ~~spdg~~L~sg 1064 (1178)
--+.++..+++.
T Consensus 289 L~~~~~~I~~~s 300 (302)
T smart00036 289 LGSSDRKILLSS 300 (302)
T ss_pred EecCCCeEEEEe
No 466
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=85.35 E-value=1.2e+02 Score=38.71 Aligned_cols=74 Identities=19% Similarity=0.194 Sum_probs=50.9
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC---------Cce---EEEE--------ecCCccEEEEEEcC-----C
Q 001042 963 CSSAVLCMEYDDSTGILAAGGRDAVANIWDIRA---------GRQ---MHKF--------LGHTKWIRSIRMDR-----D 1017 (1178)
Q Consensus 963 ~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~---------~~~---~~~~--------~~~~~~v~~l~~~~-----~ 1017 (1178)
..-.|..+..+++|+.++..|..|...+.=.+. |+. .+++ ..+...|..+.|+| .
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 345788999999999999998877544432221 111 1111 12345788999954 4
Q ss_pred EEEEEeCCCcEEEEEcCCC
Q 001042 1018 TVITGSDDWTARMWSISRG 1036 (1178)
Q Consensus 1018 ~l~sgs~dg~I~iwd~~~~ 1036 (1178)
.|++-..|+++|+||+...
T Consensus 163 ~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred eEEEEecCCEEEEEecCCC
Confidence 8899999999999999754
No 467
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=85.28 E-value=25 Score=43.95 Aligned_cols=147 Identities=13% Similarity=0.196 Sum_probs=91.4
Q ss_pred cceEEEecCCCEEEEEeCCCcEEEEECCCCcEEE------Eec----------------CCCCceEEEEEe---CCCeEE
Q 001042 884 RTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLE------ELK----------------GHDAQVSCVRML---SGERVL 938 (1178)
Q Consensus 884 ~~V~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~------~l~----------------~h~~~V~~l~~~---~~~~l~ 938 (1178)
...++++. .++++++. .+.|.||+.+.-.... .+. .-...|+.|... +...|+
T Consensus 41 NNLtalsq-~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl 118 (717)
T PF08728_consen 41 NNLTALSQ-RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLL 118 (717)
T ss_pred cceeEEec-CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEE
Confidence 34445554 66666655 5789999875422110 110 011234445443 567788
Q ss_pred EEeCCCeEEEEeCCC-------C----e---------EEEEecCCCCCEEEEEEe--CCCCEEEEEeCCCeEEEEECCCC
Q 001042 939 TASHDGTVKMWDVRT-------D----T---------CVATVGRCSSAVLCMEYD--DSTGILAAGGRDAVANIWDIRAG 996 (1178)
Q Consensus 939 sgs~dg~V~iwd~~~-------~----~---------~~~~~~~~~~~I~~l~~s--p~~~~l~sgs~dg~I~lwD~~~~ 996 (1178)
.|..||.|.+|.+++ . + +...+ .....+++++++ ...++||+++....|.||-....
T Consensus 119 ~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~ 197 (717)
T PF08728_consen 119 LCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALV 197 (717)
T ss_pred EEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEEEecCCceEEEEEEecc
Confidence 999999999997621 0 0 11111 234578999999 88889999998888888765542
Q ss_pred --ce-EEEEecCCccEEEEEE-----cCC---EEEEEeCCCcEEEEEc
Q 001042 997 --RQ-MHKFLGHTKWIRSIRM-----DRD---TVITGSDDWTARMWSI 1033 (1178)
Q Consensus 997 --~~-~~~~~~~~~~v~~l~~-----~~~---~l~sgs~dg~I~iwd~ 1033 (1178)
+. ...-..+...|.+|+| ++. .+++++-.|.+.+|++
T Consensus 198 ~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 198 DERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 11 1111135567888888 223 7888999999999887
No 468
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=84.94 E-value=26 Score=44.46 Aligned_cols=93 Identities=12% Similarity=0.033 Sum_probs=56.1
Q ss_pred CCcceEEEEecCCCCcccccccc-eeecccccc-cCCCCCCCCCCCcCC--cccccceEEecccccceEEEEeeecccee
Q 001042 767 IGRSWVQSMFSREASSRSHSFSR-VRKWTSDAA-NENGTPRKQDSTAGG--KKIQSNIRIIRGHAGAITALHCVTKREVW 842 (1178)
Q Consensus 767 h~~~i~~~aFSpdg~~las~~~d-I~vWd~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~l~gH~~~V~~l~fs~~~~~~ 842 (1178)
-.-.|..+.+||+|+++|..|.. |.|-.+... ...+..........- ....... ....+...|..+.|+|.
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~-~~~~~~~~i~qv~WhP~---- 157 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERF-FTSNSSLEIKQVRWHPW---- 157 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhh-ccCCCCceEEEEEEcCC----
Confidence 34678888999999999998888 555444321 000000000000000 0000011 12345678999999973
Q ss_pred ccccccCCCCEEEEEeCCCcEEEEcCC
Q 001042 843 DLVGDREDAGFFISGSTDCLVKIWDPS 869 (1178)
Q Consensus 843 ~~~~~s~d~~~Lasgs~Dg~I~iWd~~ 869 (1178)
+.++..|+.=..|+++|+||+.
T Consensus 158 -----s~~~~~l~vLtsdn~lR~y~~~ 179 (717)
T PF10168_consen 158 -----SESDSHLVVLTSDNTLRLYDIS 179 (717)
T ss_pred -----CCCCCeEEEEecCCEEEEEecC
Confidence 3668899999999999999987
No 469
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=84.36 E-value=10 Score=44.32 Aligned_cols=138 Identities=14% Similarity=0.139 Sum_probs=82.6
Q ss_pred EEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCC--------CEEEEEeCCCcEEEEECCC-CceEEEE---E
Q 001042 1018 TVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSD--------RGIITGSSDGLLRFWENDD-GGIKCVK---N 1085 (1178)
Q Consensus 1018 ~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg--------~~L~sgs~Dg~I~iwd~~~-~~~~~~~---~ 1085 (1178)
.+..|.....++-.|+..|+.+..+..|... -+.|.|+. +.|+ |-++..|.-.|.+- |....+. .
T Consensus 482 i~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v~esKd 558 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKVVESKD 558 (776)
T ss_pred EEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCceeeeeehh
Confidence 3445666677888899999999999877765 46677743 2344 33455454445432 2111111 1
Q ss_pred ecccCCcEEEEecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeC
Q 001042 1086 VTIHSSAILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGR 1165 (1178)
Q Consensus 1086 ~~~h~~~i~~is~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~ 1165 (1178)
+.+...--........++|+||..|.|++||.-.. .....+.+-...|..+..+.+|+++++.+.
T Consensus 559 Y~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~---------------rAKtalP~lG~aIk~idvta~Gk~ilaTCk 623 (776)
T COG5167 559 YKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGK---------------RAKTALPGLGDAIKHIDVTANGKHILATCK 623 (776)
T ss_pred ccccccccccccccCceEEEecCCCceeeehhhcc---------------hhhhcCcccccceeeeEeecCCcEEEEeec
Confidence 11111111222345679999999999999997532 112223455667889999999998776654
Q ss_pred CCcEEEEEC
Q 001042 1166 NGLLRLWEA 1174 (1178)
Q Consensus 1166 Dg~V~IWdv 1174 (1178)
. .+.+-|+
T Consensus 624 ~-yllL~d~ 631 (776)
T COG5167 624 N-YLLLTDV 631 (776)
T ss_pred c-eEEEEec
Confidence 3 4444443
No 470
>PRK05560 DNA gyrase subunit A; Validated
Probab=84.31 E-value=1.4e+02 Score=38.74 Aligned_cols=187 Identities=9% Similarity=0.013 Sum_probs=97.0
Q ss_pred EeCCCeEEEEeCCCeEEEEeC---CC------CeEEE---EecCCCCCEEEEEEeC--CCCEEEEEeCCCeEEEEECCCC
Q 001042 931 MLSGERVLTASHDGTVKMWDV---RT------DTCVA---TVGRCSSAVLCMEYDD--STGILAAGGRDAVANIWDIRAG 996 (1178)
Q Consensus 931 ~~~~~~l~sgs~dg~V~iwd~---~~------~~~~~---~~~~~~~~I~~l~~sp--~~~~l~sgs~dg~I~lwD~~~~ 996 (1178)
.+..+.++..+..|.+..... .. |..+. .+...+.-+.++.+.. +...++..+.+|.++--++..-
T Consensus 545 ~~t~d~LllfTs~Grv~~l~v~~iP~~~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~ 624 (805)
T PRK05560 545 ASTHDTLLFFTNRGRVYRLKVYEIPEASRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEF 624 (805)
T ss_pred ecCCCeEEEEecCCeEEEEEhhhCcCCCcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHh
Confidence 346666777777777665543 22 22221 1222233344555542 6678899999999988776432
Q ss_pred -------ceEEEEecCCccEEEEEE-cCCEEEEEeCCCcEEEEEcCC---------CeeeeEeccCCCcEEEE-EEecCC
Q 001042 997 -------RQMHKFLGHTKWIRSIRM-DRDTVITGSDDWTARMWSISR---------GTCDAVLACHAGPVQCV-EYSSSD 1058 (1178)
Q Consensus 997 -------~~~~~~~~~~~~v~~l~~-~~~~l~sgs~dg~I~iwd~~~---------~~~~~~~~~h~~~I~~l-~~spdg 1058 (1178)
.....+.....-+..... +.+.++..+..|.+..+.... |.....+.. ...|.++ .+.+++
T Consensus 625 ~~~~r~G~~~ikLke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~-~E~Vv~~~~v~~~~ 703 (805)
T PRK05560 625 SNIRSNGIIAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLRE-GDEVVSMDVVREDS 703 (805)
T ss_pred hhcccCCceeeccCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCC-CCEEEEEEEEcCCC
Confidence 222233332222333222 335778888888877766532 222222322 2334443 444444
Q ss_pred CEEEEEeCCCcEEEEECCCC-------ceEEEEEecccCCcEEEE--ecCCCEEEEEeCCCcEEEEEcC
Q 001042 1059 RGIITGSSDGLLRFWENDDG-------GIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRP 1118 (1178)
Q Consensus 1059 ~~L~sgs~Dg~I~iwd~~~~-------~~~~~~~~~~h~~~i~~i--s~dg~~Lasgs~Dg~I~iwd~~ 1118 (1178)
..++..+..|.++...+..- .-.....+......+..+ ..++..++..+.+|.+..++..
T Consensus 704 ~~il~vTk~G~iKr~~l~e~~~~~R~~kG~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~ 772 (805)
T PRK05560 704 QEILTVTENGYGKRTPVSEYRLQGRGGKGVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTRVS 772 (805)
T ss_pred cEEEEEEeCCeEEEEEHHHhhccCCCCCcEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEEHH
Confidence 46788888898887764311 111122222222343333 2233446666777887777765
No 471
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=84.21 E-value=75 Score=35.41 Aligned_cols=221 Identities=12% Similarity=0.131 Sum_probs=112.6
Q ss_pred EEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecc-----cccceEEEEeeeccceecc
Q 001042 772 VQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRG-----HAGAITALHCVTKREVWDL 844 (1178)
Q Consensus 772 ~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g-----H~~~V~~l~fs~~~~~~~~ 844 (1178)
.-++|+|.|.+-++.... ..+||.......+... +.+-++.+ -.+..+.+.|+.... +.+
T Consensus 26 WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~------------~L~vtiP~~~~~~~~~~PTGiVfN~~~~-F~v 92 (336)
T TIGR03118 26 WGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQD------------PLVVVIPAPPPLAAEGTPTGQVFNGSDT-FVV 92 (336)
T ss_pred ceeEecCCCCEEEecCCcceEEeecCCcccccCCcc------------ceEEEecCCCCCCCCCCccEEEEeCCCc-eEE
Confidence 457999998765555444 8899987332211110 01222221 234566777763211 111
Q ss_pred ccc-cCCCCEEEEEeCCCcEEEEcCCCCCc---eeeEeec-ccccceE---EEe--cCCCEEEEEe-CCCcEEEEECCCC
Q 001042 845 VGD-REDAGFFISGSTDCLVKIWDPSLRGS---ELRATLK-GHTRTVR---AIN--SDRGKVVSGS-DDQSVLVWDKQTS 913 (1178)
Q Consensus 845 ~~~-s~d~~~Lasgs~Dg~I~iWd~~~~~~---~~~~~l~-~h~~~V~---~~s--~d~~~l~sgs-~dg~I~iwd~~t~ 913 (1178)
..- ......++.+++||+|.-|....... .....+. +....|. ++. ..+.+|..+. ..++|.|+|-.=.
T Consensus 93 t~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~ 172 (336)
T TIGR03118 93 SGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFR 172 (336)
T ss_pred cCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccc
Confidence 000 01123468889999999998542222 1112222 2234444 343 2355555543 5688888875422
Q ss_pred cEEE--EecCCC----CceEEEEEeCCCeE-------------EEEeCCCeEEEEeCCCCeEEEEec--CCCCCEEEEEE
Q 001042 914 QLLE--ELKGHD----AQVSCVRMLSGERV-------------LTASHDGTVKMWDVRTDTCVATVG--RCSSAVLCMEY 972 (1178)
Q Consensus 914 ~~~~--~l~~h~----~~V~~l~~~~~~~l-------------~sgs~dg~V~iwd~~~~~~~~~~~--~~~~~I~~l~~ 972 (1178)
+... .+.... -.-..+.-..+..+ +.|..-|.|-++|. .|+.++.+. +.-..-+.|+.
T Consensus 173 ~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~ 251 (336)
T TIGR03118 173 PPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAI 251 (336)
T ss_pred cccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeee
Confidence 2110 111000 00011111122222 22334478889987 466666652 22344566776
Q ss_pred eC------CCCEEEEEeCCCeEEEEECCCCceEEEEecCC
Q 001042 973 DD------STGILAAGGRDAVANIWDIRAGRQMHKFLGHT 1006 (1178)
Q Consensus 973 sp------~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~ 1006 (1178)
.| .+.+|+---.||+|..+|..+++.+..+....
T Consensus 252 APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~ 291 (336)
T TIGR03118 252 APESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPD 291 (336)
T ss_pred ChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCC
Confidence 55 45666655678999999988888777776543
No 472
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=83.74 E-value=1.5e+02 Score=38.44 Aligned_cols=106 Identities=12% Similarity=0.157 Sum_probs=63.3
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEEecCCCEEEEEeCCCcEEEEEc--CCCccccccCCCC
Q 001042 1053 EYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHR--PQERLGGFSGTGS 1130 (1178)
Q Consensus 1053 ~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~Lasgs~Dg~I~iwd~--~~~~~~~~~~~g~ 1130 (1178)
+..|-+.++++| ....+++||+...++......+.-...|..+...+..+++|....++..+.. ...++..+..+.
T Consensus 940 Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD~- 1017 (1205)
T KOG1898|consen 940 AICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVVGDIQESVHFVRYRREDNQLIVFADDP- 1017 (1205)
T ss_pred EEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEEeeccceEEEEEEecCCCeEEEEeCCC-
Confidence 456666666665 5678999999876443333444445667777788899999987777665544 333322222211
Q ss_pred CccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001042 1131 KMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEA 1174 (1178)
Q Consensus 1131 ~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv 1174 (1178)
-...|+++.+- |-..+|.|+.=|.+.+-.+
T Consensus 1018 -------------~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 1018 -------------VPRHVTALELL-DYDTVAGADRFGNIAVVRI 1047 (1205)
T ss_pred -------------ccceeeEEEEe-cCCceeeccccCcEEEEEC
Confidence 11235555543 4445777777777666544
No 473
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=82.73 E-value=3.5 Score=31.35 Aligned_cols=32 Identities=19% Similarity=0.279 Sum_probs=26.7
Q ss_pred ccEEEEEEcCCCC---EEEEEeCCCcEEEEECCCC
Q 001042 1146 AVVRCIASDLERK---RICSGGRNGLLRLWEATIN 1177 (1178)
Q Consensus 1146 ~~V~~lafspdg~---~Las~s~Dg~V~IWdv~tg 1177 (1178)
+.|+++.|||+.. +|+-+-.-|.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 3689999998554 8888888899999999854
No 474
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.24 E-value=13 Score=47.53 Aligned_cols=128 Identities=9% Similarity=-0.046 Sum_probs=79.7
Q ss_pred EecCCCEEEE--EeCCCcEEEEECCCCcEE-----EEec------CCCCceEEEEEeC--CCeEEEEeCCCeEEEEeCCC
Q 001042 889 INSDRGKVVS--GSDDQSVLVWDKQTSQLL-----EELK------GHDAQVSCVRMLS--GERVLTASHDGTVKMWDVRT 953 (1178)
Q Consensus 889 ~s~d~~~l~s--gs~dg~I~iwd~~t~~~~-----~~l~------~h~~~V~~l~~~~--~~~l~sgs~dg~V~iwd~~~ 953 (1178)
+.+|+...++ .+.+-.|..+|+++-..- .-+. .......++.|++ ....+++..|+.|++..+..
T Consensus 108 ~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~ 187 (1405)
T KOG3630|consen 108 CFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQ 187 (1405)
T ss_pred eccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhh
Confidence 3566555443 344447888998653211 1111 1223456677773 45577888899998887654
Q ss_pred CeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEec----CCccEEEEEEcCC
Q 001042 954 DTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLG----HTKWIRSIRMDRD 1017 (1178)
Q Consensus 954 ~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~----~~~~v~~l~~~~~ 1017 (1178)
......-.......++++|+|.|..+++|-..|++.-|... ++....+.+ ....|.++.|-+.
T Consensus 188 ~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t 254 (1405)
T KOG3630|consen 188 LAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLST 254 (1405)
T ss_pred hhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecc
Confidence 33222212345678999999999999999999999988754 332222221 2468999999443
No 475
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.88 E-value=37 Score=44.94 Aligned_cols=225 Identities=13% Similarity=0.143 Sum_probs=103.9
Q ss_pred cccceEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCC-ceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEE
Q 001042 882 HTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDA-QVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVAT 959 (1178)
Q Consensus 882 h~~~V~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~-~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~ 959 (1178)
+.....++++....++.++..|.|+++-...-+.......... .+..+.+. ......+...+..+.+|.......+.
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~- 114 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTGVF- 114 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccceee-
Confidence 4556678899999999999999999987653333222111111 12222221 12223334445555666543222111
Q ss_pred ecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEE----EEecCCccE-EEEEEc-CCEEEEEeCCCcEEEEEc
Q 001042 960 VGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMH----KFLGHTKWI-RSIRMD-RDTVITGSDDWTARMWSI 1033 (1178)
Q Consensus 960 ~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~----~~~~~~~~v-~~l~~~-~~~l~sgs~dg~I~iwd~ 1033 (1178)
....+++....+--.+ +.| ..+.++.||..-..... .+..+...+ ...... .-.......+ -..|.+
T Consensus 115 ---~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~--~~~~~~ 187 (993)
T KOG1983|consen 115 ---LKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPYESLSPTLSIEGLVIDLD--TVLISL 187 (993)
T ss_pred ---cCCcceeccCCCCcch-hcc-cCceeeEeeechhhhccceeccccccccceeeeeccceeeeccccccc--cceeec
Confidence 1233333333333333 445 77888888864221110 011111000 000000 0000000001 111111
Q ss_pred CCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEEecCCCEEEEEeCCCcEE
Q 001042 1034 SRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSINAGDHWLGIGAADNSMS 1113 (1178)
Q Consensus 1034 ~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~Lasgs~Dg~I~ 1113 (1178)
.... ..+..+..++.+..+...++... +...+.+-.|+.............++.. +.++..++++..||.+.
T Consensus 188 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~h~Dgs~~ 259 (993)
T KOG1983|consen 188 PDAY--LGLSLIEYESLQVLYYSPTKILI-GFNRGLVVIKDRASKYVQSAYLPNGQLE-----SRDGSHFVSYHTDGSYA 259 (993)
T ss_pred cccc--ccccccccccceeeeecCCCcce-eeeeeeeeehhcccccchhhcccccccC-----ccCCceEEEEEecCCEE
Confidence 1111 22333455666666655554433 3446667777655431111111111111 77889999999999999
Q ss_pred EEEcCCCcc
Q 001042 1114 LFHRPQERL 1122 (1178)
Q Consensus 1114 iwd~~~~~~ 1122 (1178)
.||...+..
T Consensus 260 fWd~s~g~~ 268 (993)
T KOG1983|consen 260 FWDVSSGKL 268 (993)
T ss_pred eeecCCCce
Confidence 999987643
No 476
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=81.51 E-value=11 Score=40.40 Aligned_cols=73 Identities=12% Similarity=0.123 Sum_probs=52.7
Q ss_pred cEEEEEEcCCEEEEEeCCCcEEEEEcCCCeeeeEe-------c-------cCCCcEEEEEEecCCCEEEEEeCCCcEEEE
Q 001042 1008 WIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVL-------A-------CHAGPVQCVEYSSSDRGIITGSSDGLLRFW 1073 (1178)
Q Consensus 1008 ~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~-------~-------~h~~~I~~l~~spdg~~L~sgs~Dg~I~iw 1073 (1178)
++..+..+++++++.+.+|.+++||+.+++.+..- . .....|..+.++.+|.-+++-+ +|..+.|
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y 92 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSY 92 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEe
Confidence 45556667788888888888888888887654321 1 2445788888898888777664 6788999
Q ss_pred ECCCCceE
Q 001042 1074 ENDDGGIK 1081 (1178)
Q Consensus 1074 d~~~~~~~ 1081 (1178)
+.+-+.+.
T Consensus 93 ~~~L~~W~ 100 (219)
T PF07569_consen 93 SPDLGCWI 100 (219)
T ss_pred ccccceeE
Confidence 88766433
No 477
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.82 E-value=35 Score=43.74 Aligned_cols=228 Identities=11% Similarity=0.061 Sum_probs=109.3
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCcEEE---E------ec--CCCCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeE
Q 001042 888 AINSDRGKVVSGSDDQSVLVWDKQTSQLLE---E------LK--GHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTC 956 (1178)
Q Consensus 888 ~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~---~------l~--~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~ 956 (1178)
|+..-|+.+..|+.+|.+.+|.+.....-. . +. -+..+|..+...+...++-.-.|+.+.++++.+-+.
T Consensus 21 ~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~l~dsqi~~~~l~~~~~ 100 (877)
T KOG2063|consen 21 CVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLILSDSQIAVHKLPELEP 100 (877)
T ss_pred HHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchheecCCcceeeecCcccc
Confidence 677789999999999999999886542211 1 10 124555555555444455556677788888766544
Q ss_pred EEEecCCCCCEEEEEE--eC-C-C--CEEEEEe--CCCeEEEEECCCCceEEEEecCCccEEEEEEcCCEEEEEeCCCcE
Q 001042 957 VATVGRCSSAVLCMEY--DD-S-T--GILAAGG--RDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTA 1028 (1178)
Q Consensus 957 ~~~~~~~~~~I~~l~~--sp-~-~--~~l~sgs--~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~~l~sgs~dg~I 1028 (1178)
...... -..+...++ .+ + | .+.++.. .......|+-+.+..+..-.+-.....+.+|.+..+.+|-.+...
T Consensus 101 ~~~~~~-~Kg~~~f~~~~~~~s~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~c~~~~~~~~ 179 (877)
T KOG2063|consen 101 VPSGTR-LKGASLFTIDLRPISTGPSVYEICLSVRKRLIRFFWNGRDGIVLVKELGFPDVPKARAWCGHIVCLGLKKSYY 179 (877)
T ss_pred cccccc-cccceeeccccccccCCcceEEEEeeccceEEEEEecCCCceEEEEecccccchhhhcccceeEEEeecceeE
Confidence 211111 111111111 01 1 1 1222222 122333455444444443334444555666666666666665445
Q ss_pred EEEEcCCCeeeeEe-ccC--CCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEEecCCCEEEE
Q 001042 1029 RMWSISRGTCDAVL-ACH--AGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSINAGDHWLGI 1105 (1178)
Q Consensus 1029 ~iwd~~~~~~~~~~-~~h--~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~Las 1105 (1178)
.+|.-.++.....+ .+- ...-..+.-..++..++.| .|+...+-|..+.. ....++.... ...++-.+..++++
T Consensus 180 ii~~~~~~~~~~~~~s~~~~~s~~P~I~~l~~~~~ll~~-kd~~gv~vd~~G~~-~~~~~l~ws~-~P~~v~~~~PYlIa 256 (877)
T KOG2063|consen 180 IINNTSKGVGPNLFPSSMDNESRKPLIKSLSDQSELLLG-KDNIGVVVDLNGII-AQRGTLVWSE-VPLSVVVESPYLIA 256 (877)
T ss_pred EEecCCCccccceeeeccccccCCCeEEEecCCceEEEc-cCceEEEEecCCcc-cCCCceEecc-cchhhcccCceEEE
Confidence 55554444211111 110 1111223334455556665 56666666754321 0000000000 11122234455555
Q ss_pred EeCCCcEEEEEcCCC
Q 001042 1106 GAADNSMSLFHRPQE 1120 (1178)
Q Consensus 1106 gs~Dg~I~iwd~~~~ 1120 (1178)
- .++.|.||+..++
T Consensus 257 ~-~~~~veI~s~~~~ 270 (877)
T KOG2063|consen 257 L-LDRSVEIRSKLDG 270 (877)
T ss_pred E-ccccEEEEeccCH
Confidence 4 4459999998754
No 478
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=80.57 E-value=48 Score=39.62 Aligned_cols=32 Identities=28% Similarity=0.416 Sum_probs=26.0
Q ss_pred CcEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 001042 1047 GPVQCVEYSSSDRGIITGSSDGLLRFWENDDG 1078 (1178)
Q Consensus 1047 ~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~ 1078 (1178)
..|.+++..+..+.+++.+.+|.|.+|++..+
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGPG 221 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-SS
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeCC
Confidence 44899999999999999999999999999854
No 479
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=80.28 E-value=98 Score=34.04 Aligned_cols=141 Identities=16% Similarity=0.123 Sum_probs=81.1
Q ss_pred ceEEEEEe-CCCeEEEEe---CCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE-CCCCceE
Q 001042 925 QVSCVRML-SGERVLTAS---HDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWD-IRAGRQM 999 (1178)
Q Consensus 925 ~V~~l~~~-~~~~l~sgs---~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD-~~~~~~~ 999 (1178)
.+...+.+ ++..++... ....+.++. .+....... ....+..-.|++++...+....+....++. ..++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 57788888 666666554 334455554 333333221 234778889999988777766666666663 3333322
Q ss_pred E-EEe--cCCccEEEEEEcCC--EEEEEe---CCCcEEEEEcC---CC------eeeeEeccCCCcEEEEEEecCCCEEE
Q 001042 1000 H-KFL--GHTKWIRSIRMDRD--TVITGS---DDWTARMWSIS---RG------TCDAVLACHAGPVQCVEYSSSDRGII 1062 (1178)
Q Consensus 1000 ~-~~~--~~~~~v~~l~~~~~--~l~sgs---~dg~I~iwd~~---~~------~~~~~~~~h~~~I~~l~~spdg~~L~ 1062 (1178)
. ... .....|.++.++++ .++... .++.|.+--+. .+ ............++.+.|.+++.+++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 1 111 11227999988554 544443 45677766543 22 11112222346789999999998877
Q ss_pred EEeCCC
Q 001042 1063 TGSSDG 1068 (1178)
Q Consensus 1063 sgs~Dg 1068 (1178)
.+...+
T Consensus 182 ~~~~~~ 187 (253)
T PF10647_consen 182 LGRSAG 187 (253)
T ss_pred EeCCCC
Confidence 665443
No 480
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=79.25 E-value=1.1e+02 Score=34.11 Aligned_cols=197 Identities=11% Similarity=0.113 Sum_probs=111.0
Q ss_pred EEecCCCEEEEEeCCCcEEEEECC------CC-cEEEEecC-----CCCceEEEEEeCC-------------CeEEEEeC
Q 001042 888 AINSDRGKVVSGSDDQSVLVWDKQ------TS-QLLEELKG-----HDAQVSCVRMLSG-------------ERVLTASH 942 (1178)
Q Consensus 888 ~~s~d~~~l~sgs~dg~I~iwd~~------t~-~~~~~l~~-----h~~~V~~l~~~~~-------------~~l~sgs~ 942 (1178)
+++|.+..-++....+...+||.. .. ..+-++.. .....+.+.|+.. ..++.+++
T Consensus 29 a~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~tE 108 (336)
T TIGR03118 29 SYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLFVTE 108 (336)
T ss_pred EecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEEEeC
Confidence 457888777777778899999986 12 22334432 2345677777621 23678899
Q ss_pred CCeEEEEeCCCCeE-----EEEecC-CCCC-EEEEEEeC--CCCEEEEEe-CCCeEEEEECCCCceE--EEEecC-----
Q 001042 943 DGTVKMWDVRTDTC-----VATVGR-CSSA-VLCMEYDD--STGILAAGG-RDAVANIWDIRAGRQM--HKFLGH----- 1005 (1178)
Q Consensus 943 dg~V~iwd~~~~~~-----~~~~~~-~~~~-I~~l~~sp--~~~~l~sgs-~dg~I~lwD~~~~~~~--~~~~~~----- 1005 (1178)
||+|.-|...-+.. ...+.. .... -..+++.. .+.+|..+. ..++|.++|-.-.+.. ..+...
T Consensus 109 dGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPag 188 (336)
T TIGR03118 109 DGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPAG 188 (336)
T ss_pred CceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCCCCC
Confidence 99999998533222 122221 1222 34455543 345555443 6788999985433221 011100
Q ss_pred CccEEEEEEcCC-------------EEEEEeCCCcEEEEEcCCCeeeeEec--cCCCcEEEEEEec------CCCEEEEE
Q 001042 1006 TKWIRSIRMDRD-------------TVITGSDDWTARMWSISRGTCDAVLA--CHAGPVQCVEYSS------SDRGIITG 1064 (1178)
Q Consensus 1006 ~~~v~~l~~~~~-------------~l~sgs~dg~I~iwd~~~~~~~~~~~--~h~~~I~~l~~sp------dg~~L~sg 1064 (1178)
-.+-.-..+.++ .=+.|..-|.|-+||. .|..++.+. +.-..-+.++..| .|..|+--
T Consensus 189 yAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGN 267 (336)
T TIGR03118 189 YAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGN 267 (336)
T ss_pred CCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEee
Confidence 001111111122 2233445578999996 577777764 2233456777755 46777776
Q ss_pred eCCCcEEEEECCCCceEEEEEec
Q 001042 1065 SSDGLLRFWENDDGGIKCVKNVT 1087 (1178)
Q Consensus 1065 s~Dg~I~iwd~~~~~~~~~~~~~ 1087 (1178)
-.||+|..+|..++ ..+-.+.
T Consensus 268 FGDG~InaFD~~sG--~~~g~L~ 288 (336)
T TIGR03118 268 FGDGTINAYDPQSG--AQLGQLL 288 (336)
T ss_pred cCCceeEEecCCCC--ceeeeec
Confidence 78999999999988 4444443
No 481
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=78.76 E-value=1.9 Score=49.97 Aligned_cols=231 Identities=11% Similarity=0.126 Sum_probs=136.3
Q ss_pred EEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEec-ccccceEEEEeeeccceeccccccC
Q 001042 773 QSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIR-GHAGAITALHCVTKREVWDLVGDRE 849 (1178)
Q Consensus 773 ~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-gH~~~V~~l~fs~~~~~~~~~~~s~ 849 (1178)
...|-|.|.-++.++.+ +..||-.+.. .+. .-++...+++|- -
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~agq~----------------------~le~n~tg~aldm~wD------------k 84 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAGQV----------------------ILELNPTGKALDMAWD------------K 84 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhcce----------------------ecccCCchhHhhhhhc------------c
Confidence 34777877777777766 7778755322 111 123344455553 4
Q ss_pred CCCEE-EEEeCCCcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEE
Q 001042 850 DAGFF-ISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSC 928 (1178)
Q Consensus 850 d~~~L-asgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~ 928 (1178)
++..+ +.+-..+.+.+||++.........-..|......+++.+..++.+...|.+.|++..+.+.+-....|...+++
T Consensus 85 egdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq 164 (615)
T KOG2247|consen 85 EGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQ 164 (615)
T ss_pred ccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeE
Confidence 45444 45566789999998743333322223355556678888899999999999999999887776666669999999
Q ss_pred EEEeCCCeEEEEeCCCeEEEEeCCCCeEEE-EecCCCCCE--EEE---EEeCCCCEEEEEeCCCeEEEE----ECCCCce
Q 001042 929 VRMLSGERVLTASHDGTVKMWDVRTDTCVA-TVGRCSSAV--LCM---EYDDSTGILAAGGRDAVANIW----DIRAGRQ 998 (1178)
Q Consensus 929 l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~-~~~~~~~~I--~~l---~~sp~~~~l~sgs~dg~I~lw----D~~~~~~ 998 (1178)
+++...++.+.++.|..+.+-...+...-. ...+..+.. ..+ .|...|..+...-. |.+.+. +-..+..
T Consensus 165 ~av~lEd~vil~dcd~~L~v~~qegeta~ltevggepdnm~~~y~k~n~w~kage~m~sVvs-gKkhl~yak~nE~D~pv 243 (615)
T KOG2247|consen 165 IAVTLEDYVILCDCDNTLSVTTQEGETASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVS-GKKHLMYAKYNELDEPV 243 (615)
T ss_pred EEecccceeeecCcHHHHHHhhhccceeeeeeccCccchhhhheeeeeccccccceeeeeee-cHHHHHHHhhcCCCCcc
Confidence 999988888888888766555433222111 111111111 111 22333333332211 111111 1111222
Q ss_pred EEEEecCCccEEEEEEcCC-EEEEEeCCCcEEEEEcCCCee
Q 001042 999 MHKFLGHTKWIRSIRMDRD-TVITGSDDWTARMWSISRGTC 1038 (1178)
Q Consensus 999 ~~~~~~~~~~v~~l~~~~~-~l~sgs~dg~I~iwd~~~~~~ 1038 (1178)
--.++...+.+.|+.|-.+ ++..|..-|.|..-...+++.
T Consensus 244 al~fq~~~gni~cyrwylDg~i~igf~ag~iV~iS~h~aeL 284 (615)
T KOG2247|consen 244 ALQFQEKYGNIHCYRWYLDGYILIGFDAGYIVSISAHNAEL 284 (615)
T ss_pred ceEeeecCCceeEEEEeccccccccccceeEEEEeccchHH
Confidence 2256667778889988555 777777777777777666543
No 482
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=78.55 E-value=55 Score=38.23 Aligned_cols=141 Identities=10% Similarity=0.086 Sum_probs=76.3
Q ss_pred CCEEEEEEeCCCCEEEEEe-----------CCC-eEEEEECCC--Cc--eEEEEecCCccEEEEEEcCCEEEEEeCCCcE
Q 001042 965 SAVLCMEYDDSTGILAAGG-----------RDA-VANIWDIRA--GR--QMHKFLGHTKWIRSIRMDRDTVITGSDDWTA 1028 (1178)
Q Consensus 965 ~~I~~l~~sp~~~~l~sgs-----------~dg-~I~lwD~~~--~~--~~~~~~~~~~~v~~l~~~~~~l~sgs~dg~I 1028 (1178)
.....|+|+++|+++++-. ..+ .|.+++-.+ |+ ....+.........+++.++-+++++.....
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~GlyV~~~~~i~ 93 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGGVYVATPPDIL 93 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCCEEEeCCCeEE
Confidence 4457889999998776642 223 677776543 22 2334444444567787744335555555433
Q ss_pred EEEEcCCC-----ee--e-eEecc----CCCcEEEEEEecCCCEEEEEeCC-------------------CcEEEEECCC
Q 001042 1029 RMWSISRG-----TC--D-AVLAC----HAGPVQCVEYSSSDRGIITGSSD-------------------GLLRFWENDD 1077 (1178)
Q Consensus 1029 ~iwd~~~~-----~~--~-~~~~~----h~~~I~~l~~spdg~~L~sgs~D-------------------g~I~iwd~~~ 1077 (1178)
++.|.... +. + ..+.. +......++|.|||.+.++-+.. |.|.-++.++
T Consensus 94 ~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg 173 (367)
T TIGR02604 94 FLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDG 173 (367)
T ss_pred EEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCC
Confidence 34454321 11 1 11222 12347789999999876655421 3455555555
Q ss_pred CceEEEEEecccCCcE-EEEecCCCEEEEEe
Q 001042 1078 GGIKCVKNVTIHSSAI-LSINAGDHWLGIGA 1107 (1178)
Q Consensus 1078 ~~~~~~~~~~~h~~~i-~~is~dg~~Lasgs 1107 (1178)
++.+.+ ..++..+. .+++++|+++++-.
T Consensus 174 ~~~e~~--a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 174 GKLRVV--AHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CeEEEE--ecCcCCCccceECCCCCEEEEcc
Confidence 533222 23343332 56678888876644
No 483
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.48 E-value=23 Score=46.73 Aligned_cols=71 Identities=10% Similarity=0.095 Sum_probs=45.5
Q ss_pred CCccEEEEEE-cCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCce
Q 001042 1005 HTKWIRSIRM-DRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGI 1080 (1178)
Q Consensus 1005 ~~~~v~~l~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~ 1080 (1178)
+...+.+..+ ...-.+.+...+.+..|+.........+.. ....++.++..++++..||.+.+||.+.+..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 197 IEYESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLP-----NGQLESRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred cccccceeeeecCCCcceeeeeeeeeehhcccccchhhccc-----ccccCccCCceEEEEEecCCEEeeecCCCce
Confidence 3344455544 445566666777777777554433333322 1122278899999999999999999998743
No 484
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=78.00 E-value=71 Score=31.16 Aligned_cols=106 Identities=10% Similarity=0.143 Sum_probs=65.3
Q ss_pred EEEEeCCCCEEEEEeCCCeEEEEECCCCc--------eEEEEecCCccEEEEEE---c----CCEEEEEeCCCcEEEEEc
Q 001042 969 CMEYDDSTGILAAGGRDAVANIWDIRAGR--------QMHKFLGHTKWIRSIRM---D----RDTVITGSDDWTARMWSI 1033 (1178)
Q Consensus 969 ~l~~sp~~~~l~sgs~dg~I~lwD~~~~~--------~~~~~~~~~~~v~~l~~---~----~~~l~sgs~dg~I~iwd~ 1033 (1178)
.-.|+.....|++++..|+|.+++..... .+..+ .-...|++++- . .+.|+.|+.. .+..||+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt~t-~llaYDV 80 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDV 80 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEeccc-eEEEEEc
Confidence 34566666788999999999999876432 22222 34556777754 2 3467777655 7889999
Q ss_pred CCCeeeeEeccCCCcEEEEEEec----CCCEEEEEeCCCcEEEEECCCC
Q 001042 1034 SRGTCDAVLACHAGPVQCVEYSS----SDRGIITGSSDGLLRFWENDDG 1078 (1178)
Q Consensus 1034 ~~~~~~~~~~~h~~~I~~l~~sp----dg~~L~sgs~Dg~I~iwd~~~~ 1078 (1178)
.+...+..-. -.+.|+++.+-. +...+++| .+..|.-||.+..
T Consensus 81 ~~N~d~Fyke-~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~ 127 (136)
T PF14781_consen 81 ENNSDLFYKE-VPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGN 127 (136)
T ss_pred ccCchhhhhh-CccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCc
Confidence 8876554333 345677777632 23344444 4555666665443
No 485
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=77.82 E-value=13 Score=39.94 Aligned_cols=78 Identities=6% Similarity=0.029 Sum_probs=52.8
Q ss_pred cEEEEecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeec----cCCCcccEEEEEEcCCCCEEEEEeCCC
Q 001042 1092 AILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRT----PQKTVAVVRCIASDLERKRICSGGRNG 1167 (1178)
Q Consensus 1092 ~i~~is~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~----~~~h~~~V~~lafspdg~~Las~s~Dg 1167 (1178)
.+..+..+++++.+-+.+|.+++||+.+++.... +..+. .++.. -......|..+.++.+|.-|++-+ +|
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~---~~Si~--pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng 87 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLP---PVSIA--PLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NG 87 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccC---CccHH--HHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CC
Confidence 4455778899999999999999999986543111 00000 00100 004566799999999998887765 68
Q ss_pred cEEEEECC
Q 001042 1168 LLRLWEAT 1175 (1178)
Q Consensus 1168 ~V~IWdv~ 1175 (1178)
....|+.+
T Consensus 88 ~~y~y~~~ 95 (219)
T PF07569_consen 88 DSYSYSPD 95 (219)
T ss_pred CEEEeccc
Confidence 88998875
No 486
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.34 E-value=22 Score=46.64 Aligned_cols=150 Identities=12% Similarity=0.092 Sum_probs=83.7
Q ss_pred eCCCcEEEEEcCCCeeeeEeccCCCcEEEEEE--------ecCCCEEEEEeCCCcEEEEECCC----CceE---EEEEec
Q 001042 1023 SDDWTARMWSISRGTCDAVLACHAGPVQCVEY--------SSSDRGIITGSSDGLLRFWENDD----GGIK---CVKNVT 1087 (1178)
Q Consensus 1023 s~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~--------spdg~~L~sgs~Dg~I~iwd~~~----~~~~---~~~~~~ 1087 (1178)
+.|..+.+|+.+++.....+.+-+..|..+.. -|.=++++.-+.--.|.++-+.- ++.. ....+.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 45778889998887766666666666665543 22223333333444455554331 1100 011222
Q ss_pred ccCCcEEEE--ecCCCEEEEEeCCCcEEEEEcC----CCc----cccccCCCC---CccceeEeeccCCCcccEEEEEEc
Q 001042 1088 IHSSAILSI--NAGDHWLGIGAADNSMSLFHRP----QER----LGGFSGTGS---KMSGWQLYRTPQKTVAVVRCIASD 1154 (1178)
Q Consensus 1088 ~h~~~i~~i--s~dg~~Lasgs~Dg~I~iwd~~----~~~----~~~~~~~g~---~~~~~~~~~~~~~h~~~V~~lafs 1154 (1178)
.....|.++ ..+|+.+.+| .|| .+|.+. .+- ......+.+ .+-.| +...+..+..+|..++..
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs-~~~~~~~~~dpI~qi~ID 251 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPS-LLSVPGSSKDPIRQITID 251 (1311)
T ss_pred cCCceEEEEEeccCCcEEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhh-hhcCCCCCCCcceeeEec
Confidence 334455666 3566666655 566 455432 110 011111111 11112 223334677899999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCC
Q 001042 1155 LERKRICSGGRNGLLRLWEATI 1176 (1178)
Q Consensus 1155 pdg~~Las~s~Dg~V~IWdv~t 1176 (1178)
...+.+.+-++.|+|.+|++..
T Consensus 252 ~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 252 NSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cccceeeeeccCceEEEEEccC
Confidence 9999999999999999999987
No 487
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=77.27 E-value=48 Score=41.58 Aligned_cols=102 Identities=14% Similarity=0.165 Sum_probs=63.1
Q ss_pred CCCCEEEEEeCCCcEEEEcCCC-------C--Cce---------eeEeecccccceE--EEe--cCCCEEEEEeCCCcEE
Q 001042 849 EDAGFFISGSTDCLVKIWDPSL-------R--GSE---------LRATLKGHTRTVR--AIN--SDRGKVVSGSDDQSVL 906 (1178)
Q Consensus 849 ~d~~~Lasgs~Dg~I~iWd~~~-------~--~~~---------~~~~l~~h~~~V~--~~s--~d~~~l~sgs~dg~I~ 906 (1178)
-+...|+.+.+||.|.+|.++. . ... ....+. -...++ +++ ...+++|+++....|.
T Consensus 112 g~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VT 190 (717)
T PF08728_consen 112 GGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVT 190 (717)
T ss_pred CCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEE
Confidence 5678999999999999996520 0 000 001111 112333 334 5677788888888888
Q ss_pred EEECCCC--cEEE-EecCCCCceEEEEEeC----CC---eEEEEeCCCeEEEEeC
Q 001042 907 VWDKQTS--QLLE-ELKGHDAQVSCVRMLS----GE---RVLTASHDGTVKMWDV 951 (1178)
Q Consensus 907 iwd~~t~--~~~~-~l~~h~~~V~~l~~~~----~~---~l~sgs~dg~V~iwd~ 951 (1178)
||-.... +... .-..|...|-+|+|.+ +. .+++++-.|.+.+|++
T Consensus 191 VFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 191 VFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 8865432 1111 1113667788999872 22 6778889999998887
No 488
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=76.92 E-value=1.1e+02 Score=35.73 Aligned_cols=251 Identities=10% Similarity=0.063 Sum_probs=0.0
Q ss_pred cCCCCCceeeEeecccccceEEEecCCCEEEEEeCCCcEEEEECCC-----CcEEEEecCCCCceEEEEEe-CCCeEEEE
Q 001042 867 DPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQT-----SQLLEELKGHDAQVSCVRML-SGERVLTA 940 (1178)
Q Consensus 867 d~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sgs~dg~I~iwd~~t-----~~~~~~l~~h~~~V~~l~~~-~~~~l~sg 940 (1178)
|.+..+.....+......-...+...|+.-+--+.||.=..|.+.. |..+.+..-...+|.-..-. ....++.|
T Consensus 54 ~~sir~dnq~~~~~~~~~l~~gm~~~G~~a~l~~N~g~Gvf~~l~~~~aPAgs~I~~qal~~ppv~wa~~~~gqp~~alg 133 (733)
T COG4590 54 DASIRGDNQVKTVSTTDPLLMGMGAYGENAFLMSNDGVGVFWSLRSVSAPAGSPIQTQALGFPPVLWAQTPPGQPWFALG 133 (733)
T ss_pred cceeeccceeEeeccCCcceeecccccceeEEEecCCccEEEEecccCCCCCCchhhhhcCCCCcccccCCCCCceEEEe
Q ss_pred eCCCeEEEEe---------------------------------------------------------------CCCCeEE
Q 001042 941 SHDGTVKMWD---------------------------------------------------------------VRTDTCV 957 (1178)
Q Consensus 941 s~dg~V~iwd---------------------------------------------------------------~~~~~~~ 957 (1178)
..||.+.+.. ...++.+
T Consensus 134 lsngqv~v~qp~~s~t~p~pg~~Fp~g~~p~aLd~qgr~leh~~~~lalA~~~~~qf~~~~~t~~~~~L~g~~t~q~e~i 213 (733)
T COG4590 134 LSNGQVAVVQPQLSHTMPTPGREFPPGLEPLALDEQGRLLEHPLQQLALALTAEAQFATYDNTQQIQILRGDRTTQQEII 213 (733)
T ss_pred ccCCeEEEEeccccccCCCCCccCCCCCCccccCcccCcccchHHHhhhccchhhHHHHhhhhhhhhhhhcccCchhhhh
Q ss_pred EEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEE---------cCCEEEEEeCCCcE
Q 001042 958 ATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM---------DRDTVITGSDDWTA 1028 (1178)
Q Consensus 958 ~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~---------~~~~l~sgs~dg~I 1028 (1178)
..+......+..+-..|||+.+..-+. ..+.++++.+......--....+-.+.+- .+..+.+++.||.|
T Consensus 214 ~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~v 292 (733)
T COG4590 214 RLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLV 292 (733)
T ss_pred hhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCce
Q ss_pred EEE-EcCCC-----eeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEEecCCCE
Q 001042 1029 RMW-SISRG-----TCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSINAGDHW 1102 (1178)
Q Consensus 1029 ~iw-d~~~~-----~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~ 1102 (1178)
.-| |++.+ ..++.++-...++..+.-..+.+-+++-+..|++..+.....+.......-. .....++||.+.+
T Consensus 293 sQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~-~~~~~~~Sp~~~~ 371 (733)
T COG4590 293 SQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQ-APQLVAMSPNQAY 371 (733)
T ss_pred eeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhc-CcceeeeCcccch
Q ss_pred EEEEeCCCcEEEEEcCCC
Q 001042 1103 LGIGAADNSMSLFHRPQE 1120 (1178)
Q Consensus 1103 Lasgs~Dg~I~iwd~~~~ 1120 (1178)
+++- ..|.|+++.+++.
T Consensus 372 Ll~e-~~gki~~~~l~Nr 388 (733)
T COG4590 372 LLSE-DQGKIRLAQLENR 388 (733)
T ss_pred heee-cCCceEEEEecCC
No 489
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=76.55 E-value=9.8 Score=39.21 Aligned_cols=35 Identities=6% Similarity=0.164 Sum_probs=26.3
Q ss_pred cceEEEEeeeccceeccccccCC-CCEEEEEeCCCcEEEEcCC
Q 001042 828 GAITALHCVTKREVWDLVGDRED-AGFFISGSTDCLVKIWDPS 869 (1178)
Q Consensus 828 ~~V~~l~fs~~~~~~~~~~~s~d-~~~Lasgs~Dg~I~iWd~~ 869 (1178)
..|.+++|||. +..++ +-+||+-+.+|.|.||...
T Consensus 86 ~~vv~~aWSP~-------Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPS-------GLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCC-------CCCCCCceEEEEEcCCCeEEEEecC
Confidence 37889999873 33344 4577888999999999855
No 490
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=76.28 E-value=10 Score=29.00 Aligned_cols=32 Identities=25% Similarity=0.412 Sum_probs=26.6
Q ss_pred CCEEEEEEeCCC---CEEEEEeCCCeEEEEECCCC
Q 001042 965 SAVLCMEYDDST---GILAAGGRDAVANIWDIRAG 996 (1178)
Q Consensus 965 ~~I~~l~~sp~~---~~l~sgs~dg~I~lwD~~~~ 996 (1178)
+.+.++.|+|+. .+|+.+-..|.+.++|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468999999844 48888888999999999953
No 491
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=75.15 E-value=0.35 Score=55.60 Aligned_cols=141 Identities=18% Similarity=0.228 Sum_probs=96.1
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCe-EEEEeCCCeEEEEeCCCCeEEEEecCCCC
Q 001042 888 AINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGER-VLTASHDGTVKMWDVRTDTCVATVGRCSS 965 (1178)
Q Consensus 888 ~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~-l~sgs~dg~V~iwd~~~~~~~~~~~~~~~ 965 (1178)
.+.+.+..++.++.+..+..||-. ++...... ..+....++|. +++. ++.+-..+.+.+||+.+...-+.-.+...
T Consensus 41 ~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~ 118 (615)
T KOG2247|consen 41 RWRPEGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTS 118 (615)
T ss_pred eEecCCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcc
Confidence 345667778888888889999854 44433332 34455567776 4444 45667789999999976532211111122
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEcC-CEEEEEeCCCcEEE
Q 001042 966 AVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR-DTVITGSDDWTARM 1030 (1178)
Q Consensus 966 ~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~-~~l~sgs~dg~I~i 1030 (1178)
.-.-+.|++.+..++.|...|.+.+++..+.+.+...-.|...++++++.. ++.+.++.|..+.+
T Consensus 119 s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~v 184 (615)
T KOG2247|consen 119 SKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTLSV 184 (615)
T ss_pred hHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHHHHHH
Confidence 222378999999999999999999999988877777655899999999954 46777766654443
No 492
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=74.87 E-value=1.5e+02 Score=33.30 Aligned_cols=168 Identities=8% Similarity=0.087 Sum_probs=93.5
Q ss_pred eEEEEECCCCceEEEEec------CCccEEEEEEcC-------CEEEEEe-CCCcEEEEEcCCCeeeeEeccC-------
Q 001042 987 VANIWDIRAGRQMHKFLG------HTKWIRSIRMDR-------DTVITGS-DDWTARMWSISRGTCDAVLACH------- 1045 (1178)
Q Consensus 987 ~I~lwD~~~~~~~~~~~~------~~~~v~~l~~~~-------~~l~sgs-~dg~I~iwd~~~~~~~~~~~~h------- 1045 (1178)
.|.+||+++++.++++.- ..+....+.++. .++..+. ..+.+.++|+.+++..+....+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 788999999998887653 245677888854 2333333 4467999999998765554432
Q ss_pred ------------CCcEEEEEEec---CCCEEEEEeCCCcEEEEECCC-----Cc----e---EEEEEe--cccCCcEEEE
Q 001042 1046 ------------AGPVQCVEYSS---SDRGIITGSSDGLLRFWENDD-----GG----I---KCVKNV--TIHSSAILSI 1096 (1178)
Q Consensus 1046 ------------~~~I~~l~~sp---dg~~L~sgs~Dg~I~iwd~~~-----~~----~---~~~~~~--~~h~~~i~~i 1096 (1178)
.+.+.+++.+| +|++|.-+...+ -++|.+.+ .. . ..+..+ ++......++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~ 193 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI 193 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Confidence 12255566654 555665554333 12333321 10 0 011111 1123445677
Q ss_pred ecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcC--CCCEEEEEe
Q 001042 1097 NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDL--ERKRICSGG 1164 (1178)
Q Consensus 1097 s~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafsp--dg~~Las~s 1164 (1178)
+++|.+..+--..+.|..|+..+.- .....+.+..-...-.++.++++.+ +|.+.+.++
T Consensus 194 D~~G~ly~~~~~~~aI~~w~~~~~~---------~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 194 DPNGNLYFTDVEQNAIGCWDPDGPY---------TPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp ETTTEEEEEECCCTEEEEEETTTSB----------GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred CCCCcEEEecCCCCeEEEEeCCCCc---------CccchheeEEcCceeeccceeeeccccCceEEEEEC
Confidence 8899999998899999999986310 0111233333323345788999999 888766654
No 493
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=73.97 E-value=2e+02 Score=34.44 Aligned_cols=175 Identities=9% Similarity=-0.048 Sum_probs=0.0
Q ss_pred EEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEE-------ecCCccEEEEEEcCCE--------EE
Q 001042 956 CVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKF-------LGHTKWIRSIRMDRDT--------VI 1020 (1178)
Q Consensus 956 ~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~-------~~~~~~v~~l~~~~~~--------l~ 1020 (1178)
.+..+...-..-+.|+|.|+|+++++--..|.|++++..++...... ....+....|++++++ +.
T Consensus 21 ~~~~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lY 100 (454)
T TIGR03606 21 DKKVLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVY 100 (454)
T ss_pred EEEEEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEE
Q ss_pred EEe----------CCCcEEEEEcC-----CCeeeeEeccCCCc----EEEEEEecCCCEEEEEeCCCcEEEEECCCCceE
Q 001042 1021 TGS----------DDWTARMWSIS-----RGTCDAVLACHAGP----VQCVEYSSSDRGIITGSSDGLLRFWENDDGGIK 1081 (1178)
Q Consensus 1021 sgs----------~dg~I~iwd~~-----~~~~~~~~~~h~~~----I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~ 1081 (1178)
... ....|.-|.+. -......+...... -..++|.|||.+.++.+..+.-..-+.... .
T Consensus 101 vsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g~~~~~n~~~~--~ 178 (454)
T TIGR03606 101 ISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQGRNQGANFFLP--N 178 (454)
T ss_pred EEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCCCCCcccccCc--c
Q ss_pred EEE-----------EecccCCcEEEEecCCCEEEEEeCCCcE------EEEEcCCCccccccCCCCCccceeEeeccCCC
Q 001042 1082 CVK-----------NVTIHSSAILSINAGDHWLGIGAADNSM------SLFHRPQERLGGFSGTGSKMSGWQLYRTPQKT 1144 (1178)
Q Consensus 1082 ~~~-----------~~~~h~~~i~~is~dg~~Lasgs~Dg~I------~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h 1144 (1178)
.-+ ....+.+.|+.+.+|| +.-.|+-. .||.. +|
T Consensus 179 ~aQ~~~~~~~~~~~d~~~~~GkILRin~DG----siP~dNPf~~g~~~eIyA~-------------------------G~ 229 (454)
T TIGR03606 179 QAQHTPTQQELNGKDYHAYMGKVLRLNLDG----SIPKDNPSINGVVSHIFTY-------------------------GH 229 (454)
T ss_pred hhccccccccccccCcccCceEEEEEcCCC----CCCCCCCccCCCcceEEEE-------------------------ec
Q ss_pred cccEEEEEEcCCCCEEEE
Q 001042 1145 VAVVRCIASDLERKRICS 1162 (1178)
Q Consensus 1145 ~~~V~~lafspdg~~Las 1162 (1178)
..+. .++|+|+|++.++
T Consensus 230 RNp~-Gla~dp~G~Lw~~ 246 (454)
T TIGR03606 230 RNPQ-GLAFTPDGTLYAS 246 (454)
T ss_pred cccc-eeEECCCCCEEEE
No 494
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=73.89 E-value=44 Score=40.85 Aligned_cols=269 Identities=12% Similarity=0.135 Sum_probs=0.0
Q ss_pred eEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEEeCCCcEEEE-
Q 001042 830 ITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVW- 908 (1178)
Q Consensus 830 V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sgs~dg~I~iw- 908 (1178)
++++.-+ |.|+-+++++.||+|++++.. ......+-....+-..+-..+.-+++++.|..+.-|
T Consensus 17 ~~aiqsh------------p~~~s~v~~~~d~si~lfn~~---~r~qski~~~~~p~~nlv~tnhgl~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 17 TTAIQSH------------PGGQSFVLAHQDGSIILFNFI---PRRQSKICEEAKPKENLVFTNHGLVTATSDRRALAWK 81 (1636)
T ss_pred eeeeeec------------CCCceEEEEecCCcEEEEeec---ccchhhhhhhcCCccceeeeccceEEEeccchhheee
Q ss_pred --------------------------------------------------------------------ECCCCcEEEEec
Q 001042 909 --------------------------------------------------------------------DKQTSQLLEELK 920 (1178)
Q Consensus 909 --------------------------------------------------------------------d~~t~~~~~~l~ 920 (1178)
|+.++.....+.
T Consensus 82 ~dgvvqqqfdyndqsekefss~~cdptaqnvvgtlcggv~q~dcclrr~i~knkfe~tyv~pshvilkdlsn~trt~l~s 161 (1636)
T KOG3616|consen 82 EDGVVQQQFDYNDQSEKEFSSILCDPTAQNVVGTLCGGVEQFDCCLRRGILKNKFELTYVAPSHVILKDLSNDTRTNLIS 161 (1636)
T ss_pred ccCcchhhccccchhhhhccceecCchhhhhhhhhccceeeehHHHHhHHHhccceeEEeccceeeeecccCCceEeeee
Q ss_pred CCCCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEE---------
Q 001042 921 GHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIW--------- 991 (1178)
Q Consensus 921 ~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lw--------- 991 (1178)
...-.|..+.....++.+.+....+|.+=|+.+.+....--...+.-.-.-|.-.+-.++.....-++.-|
T Consensus 162 ~~g~aidelkilgkdryli~~ts~siii~d~es~rfsei~wqgsgg~ekfffd~~n~cli~nageltlveyg~d~slg~v 241 (1636)
T KOG3616|consen 162 HKGLAIDELKILGKDRYLIAHTSESIIIADLESNRFSEIAWQGSGGHEKFFFDFENCCLIFNAGELTLVEYGNDDSLGSV 241 (1636)
T ss_pred cCCcchhhhhhccccceEEeeccccEEEeecccchhhhhhcccCCCcceeeeecCcEEEEEecCeeEEEEecCCCcchhh
Q ss_pred --------------------------------------ECCCCceEEEEecCCccEEEEEE---cCCEEEEEeCCCcEEE
Q 001042 992 --------------------------------------DIRAGRQMHKFLGHTKWIRSIRM---DRDTVITGSDDWTARM 1030 (1178)
Q Consensus 992 --------------------------------------D~~~~~~~~~~~~~~~~v~~l~~---~~~~l~sgs~dg~I~i 1030 (1178)
|+++|+...--.--.....++-| ....+.---.=-.|.|
T Consensus 242 rte~~nphlisvqike~~qksygrnfdse~n~~~a~~~di~tgqicvfsdflqrrtssvffiikakakifndlqlphi~i 321 (1636)
T KOG3616|consen 242 RTEFMNPHLISVQIKEACQKSYGRNFDSEDNKKLAEHIDIKTGQICVFSDFLQRRTSSVFFIIKAKAKIFNDLQLPHIAI 321 (1636)
T ss_pred hhhhcCceeeehHHHHHHHHhhCCCCCcchhhhHHHHhccccCceeeehhhhhhccccceeeehhhhhhcccccCcceee
Q ss_pred -EEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEEecCCCEEEEEeCC
Q 001042 1031 -WSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSINAGDHWLGIGAAD 1109 (1178)
Q Consensus 1031 -wd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~Lasgs~D 1109 (1178)
.|+-.|.....+. |.+.|--+..+..+..++--...-.+.++|+.+.....+..+.....+| |.+..++.-+.|
T Consensus 322 pvdli~g~~~~~in-h~~~vdwielne~~~kllfrdkk~kl~l~di~s~qksmilnfcsymqwv----p~sdvivaqn~d 396 (1636)
T KOG3616|consen 322 PVDLIGGQNEGFIN-HEGAVDWIELNERAHKLLFRDKKLKLHLVDIESCQKSMILNFCSYMQWV----PGSDVIVAQNGD 396 (1636)
T ss_pred eeecccCccccccc-ccccccceeccchhhhhhcccccceeEEEEcccchHHHHHHHhhhheec----cCcceEEecCCC
Q ss_pred CcEEEEEcC
Q 001042 1110 NSMSLFHRP 1118 (1178)
Q Consensus 1110 g~I~iwd~~ 1118 (1178)
+-..-|++.
T Consensus 397 nl~iwyn~d 405 (1636)
T KOG3616|consen 397 NLCIWYNID 405 (1636)
T ss_pred ceEEEecCC
No 495
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=73.26 E-value=2.7e+02 Score=36.06 Aligned_cols=79 Identities=11% Similarity=0.013 Sum_probs=48.0
Q ss_pred CcEEEEe--cCCCEEEEEeCCCcEEEEEcCCCcccccc-CCCCCccceeEe----eccCCCcccEEEEEEcCCCCEEEEE
Q 001042 1091 SAILSIN--AGDHWLGIGAADNSMSLFHRPQERLGGFS-GTGSKMSGWQLY----RTPQKTVAVVRCIASDLERKRICSG 1163 (1178)
Q Consensus 1091 ~~i~~is--~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~-~~g~~~~~~~~~----~~~~~h~~~V~~lafspdg~~Las~ 1163 (1178)
..|.++. ..+.+++..-.||+|.++|..+-+..... ..+......... ..+ .+...+..++|||.+..++.-
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~f-p~~~~~~~vafSPt~c~~v~~ 338 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHF-PCIQPPLHVAFSPTMCSLVQI 338 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCcccccccccccccc-ccCCCCceEEECcccceEEEE
Confidence 3455552 45678999999999999998765432222 111111000000 001 112255678999999999999
Q ss_pred eCCCcEE
Q 001042 1164 GRNGLLR 1170 (1178)
Q Consensus 1164 s~Dg~V~ 1170 (1178)
+.||.+.
T Consensus 339 ~~~~~~~ 345 (753)
T PF11635_consen 339 DEDGKTK 345 (753)
T ss_pred ecCCCce
Confidence 9999865
No 496
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=72.80 E-value=59 Score=37.66 Aligned_cols=198 Identities=15% Similarity=0.158 Sum_probs=98.3
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEecC----CCCceEEEEEeCCCeEEEE--------eCCCeEEEEeCCCCeEEEEe
Q 001042 893 RGKVVSGSDDQSVLVWDKQTSQLLEELKG----HDAQVSCVRMLSGERVLTA--------SHDGTVKMWDVRTDTCVATV 960 (1178)
Q Consensus 893 ~~~l~sgs~dg~I~iwd~~t~~~~~~l~~----h~~~V~~l~~~~~~~l~sg--------s~dg~V~iwd~~~~~~~~~~ 960 (1178)
++.+..-+..+.|-+|+..+++....... ..+.-.-+.|.++..++.. ..++.|++||.+...
T Consensus 235 ~~~l~~~s~~~~Igvw~~~t~q~~d~~~~s~~dsag~~~kL~w~ng~~~li~~~~fp~~~kdN~~i~~~d~Rd~n----- 309 (465)
T KOG2714|consen 235 GTQLVALSSVGKIGVWHAVTQQAQDVQPISSYDSAGSFLKLGWLNGSNLLIDSQKFPLRMKDNDLIVTEDFRDRN----- 309 (465)
T ss_pred hhhhhhccccccccccchhhhceeeeeeccCccccCChhhhccccCceeEEEEeeccccccCCceEEEeeccCCC-----
Confidence 44455566778999999988854433322 1223344556655443332 346788899987655
Q ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC------ceEEEEecCCccEEEEEEcCCEEEEEeCCCcEEEEEcC
Q 001042 961 GRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAG------RQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSIS 1034 (1178)
Q Consensus 961 ~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~------~~~~~~~~~~~~v~~l~~~~~~l~sgs~dg~I~iwd~~ 1034 (1178)
++..|. .++.|+..+.+++-|.-.. ....++..|..+.. ++=.+...+.+++|...
T Consensus 310 -------~~~~W~----~i~~gt~~~~vrv~~~~~~~~~~~~~l~~~f~~~~~~L~-------~idv~~~~~~~~~~~~t 371 (465)
T KOG2714|consen 310 -------TSGNWI----EIAYGTSSGEVRVIDQHPETVGVGPCLFQTFEVHGSPLG-------LIDVCSDGGHVRVWNST 371 (465)
T ss_pred -------ccceEE----EecCCccccceEeeeccccccCCCCeEEEEEEecCCCcc-------eeehhhhCCcceEEeec
Confidence 112232 2445566666776664321 22344555554421 33344556778899876
Q ss_pred CCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCc--------eEEE-EEecccCCcEEEEecCCCE-EE
Q 001042 1035 RGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGG--------IKCV-KNVTIHSSAILSINAGDHW-LG 1104 (1178)
Q Consensus 1035 ~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~--------~~~~-~~~~~h~~~i~~is~dg~~-La 1104 (1178)
..+-+..-.....+..| -+.++--..++....|.-+... ...+ +........+..++..|+. ++
T Consensus 372 r~rGm~s~~pg~~~~~s------~k~l~Le~~~~~~s~~~gNd~~~~gd~~d~~vfi~Kl~~s~~~~i~~ls~gGdRlfv 445 (465)
T KOG2714|consen 372 RFRGMISTQPGSTPEAS------FKKLALEEGDEFSSMSSGNDSGPVGDGDDQQVFIQKLVPSAGGLIVRLSSGGDRLFV 445 (465)
T ss_pred ccccccccCCCCCcccc------cceeeehhccccceeeecccccccCCchhhhhhhhhhccccCCcEEEEecCCeeEEE
Confidence 54433222211111110 1112222223333333221110 0111 1223345567777766654 45
Q ss_pred EEeCCCcEEEEEcCC
Q 001042 1105 IGAADNSMSLFHRPQ 1119 (1178)
Q Consensus 1105 sgs~Dg~I~iwd~~~ 1119 (1178)
+-+.+..|.+|....
T Consensus 446 ~rs~~~~v~vw~~~~ 460 (465)
T KOG2714|consen 446 VRSVESPVTVWEVLE 460 (465)
T ss_pred EEeccCceeEEEecC
Confidence 566778899998763
No 497
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=72.48 E-value=2.4e+02 Score=34.55 Aligned_cols=222 Identities=12% Similarity=0.116 Sum_probs=113.4
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCc---EEEEecCCCCceEEEEEeCCC--eEEEEeCC--CeEEEEeCCCCeEEEEecCC
Q 001042 891 SDRGKVVSGSDDQSVLVWDKQTSQ---LLEELKGHDAQVSCVRMLSGE--RVLTASHD--GTVKMWDVRTDTCVATVGRC 963 (1178)
Q Consensus 891 ~d~~~l~sgs~dg~I~iwd~~t~~---~~~~l~~h~~~V~~l~~~~~~--~l~sgs~d--g~V~iwd~~~~~~~~~~~~~ 963 (1178)
.++..++.+..+|.+....+.... .+..+..-....+++.+.+++ .++.|+.- +.+.-|....-+.+..+. .
T Consensus 220 ~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~-N 298 (504)
T PF10433_consen 220 KDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP-N 298 (504)
T ss_dssp TTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE---
T ss_pred CCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-C
Confidence 457789999999999888776533 122222114556777777766 88888864 455555544444555553 3
Q ss_pred CCCEEEEEEeCC----CC------EEEEEe---CCCeEEEEECCCCceEE--E--EecC--CccEEEEEEc---CCEEEE
Q 001042 964 SSAVLCMEYDDS----TG------ILAAGG---RDAVANIWDIRAGRQMH--K--FLGH--TKWIRSIRMD---RDTVIT 1021 (1178)
Q Consensus 964 ~~~I~~l~~sp~----~~------~l~sgs---~dg~I~lwD~~~~~~~~--~--~~~~--~~~v~~l~~~---~~~l~s 1021 (1178)
-++|..++..+. .. .+++++ .+|.+++.. .|-... . .... -..++.+... ..+++.
T Consensus 299 ~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr--~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~ 376 (504)
T PF10433_consen 299 WGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR--NGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVL 376 (504)
T ss_dssp --SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE--ESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEE
T ss_pred cCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe--ccCCceeeeeeccCCCCceEEEEeeecCCCceEEEE
Confidence 567888888531 11 444443 467787764 333322 1 1111 2344445443 346666
Q ss_pred EeCCCcEEEEEcC---CCeeeeEec--c---CCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcE
Q 001042 1022 GSDDWTARMWSIS---RGTCDAVLA--C---HAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAI 1093 (1178)
Q Consensus 1022 gs~dg~I~iwd~~---~~~~~~~~~--~---h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i 1093 (1178)
+..+ .-+++.+. ....+.... + ....+.+-.+. +..++=.... .|++.+...++....... .....|
T Consensus 377 S~~~-~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~-~i~l~~~~~~~~~~~w~~-~~~~~I 451 (504)
T PF10433_consen 377 SFPN-ETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPK-GIRLIDLEDGKLTQEWKP-PAGSII 451 (504)
T ss_dssp EESS-EEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESS-EEEEEESSSTSEEEEEE--TTS---
T ss_pred EcCC-ceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecC-eEEEEECCCCeEEEEEeC-CCCCeE
Confidence 6655 44455553 233322221 1 11122222222 3444444333 478888766633222222 244556
Q ss_pred EEEecCCCEEEEEeCCCcEEEEEcCCC
Q 001042 1094 LSINAGDHWLGIGAADNSMSLFHRPQE 1120 (1178)
Q Consensus 1094 ~~is~dg~~Lasgs~Dg~I~iwd~~~~ 1120 (1178)
.+.+.++.+++.+..++.+..+.+...
T Consensus 452 ~~a~~~~~~v~v~~~~~~~~~~~~~~~ 478 (504)
T PF10433_consen 452 VAASINDPQVLVALSGGELVYFELDDN 478 (504)
T ss_dssp SEEEESSSEEEEEE-TTEEEEEEEETT
T ss_pred EEEEECCCEEEEEEeCCcEEEEEEECC
Confidence 666677788888888999999988743
No 498
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=72.03 E-value=2e+02 Score=33.52 Aligned_cols=182 Identities=18% Similarity=0.239 Sum_probs=106.6
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCCceeeEeec-ccccceE---EEecCCCE--EEEEeC-C---CcEEEEECC--CCcEE
Q 001042 849 EDAGFFISGSTDCLVKIWDPSLRGSELRATLK-GHTRTVR---AINSDRGK--VVSGSD-D---QSVLVWDKQ--TSQLL 916 (1178)
Q Consensus 849 ~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~-~h~~~V~---~~s~d~~~--l~sgs~-d---g~I~iwd~~--t~~~~ 916 (1178)
|...+++....++-+.+||++ +..+ +.+. +....|- .+.-.|+. |+.++. + .+|++|.+. ++. +
T Consensus 66 p~kSlIigTdK~~GL~VYdL~--Gk~l-q~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L 141 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLD--GKEL-QSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-L 141 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETT--S-EE-EEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-E
T ss_pred cccceEEEEeCCCCEEEEcCC--CcEE-EeecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-c
Confidence 566788888888999999976 4444 3333 3322221 23345544 444443 2 469999765 343 3
Q ss_pred EEecC-------CCCceEEEEEe----CCC-eEEEEeCCCeEEEEeCC---CC----eEEEEecCCCCCEEEEEEeCCCC
Q 001042 917 EELKG-------HDAQVSCVRML----SGE-RVLTASHDGTVKMWDVR---TD----TCVATVGRCSSAVLCMEYDDSTG 977 (1178)
Q Consensus 917 ~~l~~-------h~~~V~~l~~~----~~~-~l~sgs~dg~V~iwd~~---~~----~~~~~~~~~~~~I~~l~~sp~~~ 977 (1178)
..+.. ....+..+|.. ++. +.++...+|.+.-|.+. .+ +.++.+.. .+.+..+..+....
T Consensus 142 ~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g 220 (381)
T PF02333_consen 142 TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETG 220 (381)
T ss_dssp EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTT
T ss_pred eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccC
Confidence 33322 12346667653 233 56677889988887764 33 35666644 45889999999999
Q ss_pred EEEEEeCCCeEEEEECCCC-----ceEEEEec--CCccEEEEEE----cCC-EEEEEe-CCCcEEEEEcCC
Q 001042 978 ILAAGGRDAVANIWDIRAG-----RQMHKFLG--HTKWIRSIRM----DRD-TVITGS-DDWTARMWSISR 1035 (1178)
Q Consensus 978 ~l~sgs~dg~I~lwD~~~~-----~~~~~~~~--~~~~v~~l~~----~~~-~l~sgs-~dg~I~iwd~~~ 1035 (1178)
.|+.|-.+.-|+-|+.+.. +.+....+ ....|-.++. ++. +|++++ .+++..+|+...
T Consensus 221 ~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 221 RLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp EEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred CEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 9999999998888888632 22222222 2346667766 222 555444 677899999654
No 499
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=71.69 E-value=56 Score=39.00 Aligned_cols=32 Identities=19% Similarity=0.371 Sum_probs=25.4
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Q 001042 964 SSAVLCMEYDDSTGILAAGGRDAVANIWDIRA 995 (1178)
Q Consensus 964 ~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~ 995 (1178)
+..|..++..+..+.+++.+.+|.|.+||+..
T Consensus 189 ~~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 189 RPKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp ---EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hhceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 34589999999999999999999999999975
No 500
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=71.59 E-value=3.5e+02 Score=36.12 Aligned_cols=78 Identities=15% Similarity=0.171 Sum_probs=44.6
Q ss_pred eecccccceEEEecCCC----E-----EEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-----CCCeEEEEeCC
Q 001042 878 TLKGHTRTVRAINSDRG----K-----VVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-----SGERVLTASHD 943 (1178)
Q Consensus 878 ~l~~h~~~V~~~s~d~~----~-----l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-----~~~~l~sgs~d 943 (1178)
...||...|.|...+|. . -++.+-||.+.|=|.+ .++.+.......+-+... ..-+++..--|
T Consensus 342 mgdG~qR~veC~~C~G~a~~~~L~aPvala~a~DGSl~VGDfN---yIRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvd 418 (1899)
T KOG4659|consen 342 MGDGHQRDVECPKCEGKADSISLFAPVALAYAPDGSLIVGDFN---YIRRISQDGQVSTILTLGLTDTSHSYYIAVSPVD 418 (1899)
T ss_pred ccCcccccccCCCCCCccccceeeceeeEEEcCCCcEEEccch---heeeecCCCceEEEEEecCCCccceeEEEecCcC
Confidence 34567777777655443 1 2356778888886653 444443222222222222 12346677789
Q ss_pred CeEEEEeCCCCeEEE
Q 001042 944 GTVKMWDVRTDTCVA 958 (1178)
Q Consensus 944 g~V~iwd~~~~~~~~ 958 (1178)
|++.+-|..+.+..+
T Consensus 419 gtlyvSdp~s~qv~r 433 (1899)
T KOG4659|consen 419 GTLYVSDPLSKQVWR 433 (1899)
T ss_pred ceEEecCCCcceEEE
Confidence 999988877666543
Done!