Query 001042
Match_columns 1178
No_of_seqs 1307 out of 4678
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 07:59:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001042.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001042hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tw8_A DENN domain-containing 100.0 8.7E-68 3E-72 603.3 18.6 373 2-453 11-390 (391)
2 1nr0_A Actin interacting prote 100.0 1.2E-45 3.9E-50 462.1 52.7 386 744-1177 22-568 (611)
3 1nr0_A Actin interacting prote 100.0 1.9E-44 6.5E-49 451.1 50.0 389 736-1175 54-610 (611)
4 2ymu_A WD-40 repeat protein; u 100.0 1.7E-42 5.7E-47 429.9 52.0 354 762-1173 215-577 (577)
5 2ymu_A WD-40 repeat protein; u 100.0 4.8E-41 1.7E-45 416.7 52.3 358 761-1175 9-415 (577)
6 1pgu_A Actin interacting prote 100.0 3.2E-40 1.1E-44 411.9 50.0 387 760-1177 55-615 (615)
7 3sfz_A APAF-1, apoptotic pepti 100.0 1.6E-39 5.4E-44 440.5 44.6 383 759-1178 606-1160(1249)
8 1pgu_A Actin interacting prote 100.0 1.4E-38 4.8E-43 397.0 49.5 368 765-1177 15-573 (615)
9 2oaj_A Protein SNI1; WD40 repe 100.0 1.8E-39 6.2E-44 421.6 42.8 376 764-1177 13-606 (902)
10 2oaj_A Protein SNI1; WD40 repe 100.0 3.8E-39 1.3E-43 418.6 42.8 385 743-1174 19-659 (902)
11 1vyh_C Platelet-activating fac 100.0 2E-38 6.8E-43 376.5 40.0 283 761-1076 101-410 (410)
12 3sfz_A APAF-1, apoptotic pepti 100.0 6.4E-39 2.2E-43 434.6 40.6 397 740-1177 614-1208(1249)
13 3ow8_A WD repeat-containing pr 100.0 5.4E-38 1.8E-42 359.8 41.8 290 819-1118 24-320 (321)
14 1vyh_C Platelet-activating fac 100.0 3.6E-38 1.2E-42 374.2 40.2 282 820-1117 101-409 (410)
15 3ow8_A WD repeat-containing pr 100.0 6E-37 2.1E-41 351.1 43.2 285 874-1175 23-320 (321)
16 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.2E-36 4E-41 365.0 47.4 326 819-1177 110-443 (445)
17 1got_B GT-beta; complex (GTP-b 100.0 1.3E-36 4.3E-41 351.3 44.6 282 819-1116 47-340 (340)
18 1got_B GT-beta; complex (GTP-b 100.0 1.8E-36 6.1E-41 350.1 43.6 282 874-1173 46-340 (340)
19 1r5m_A SIR4-interacting protei 100.0 1.1E-36 3.8E-41 360.5 41.5 336 823-1175 41-424 (425)
20 2pbi_B Guanine nucleotide-bind 100.0 8.8E-36 3E-40 346.3 42.3 283 874-1173 55-354 (354)
21 2ynn_A Coatomer subunit beta'; 100.0 1.4E-35 4.8E-40 336.8 42.7 283 819-1118 5-301 (304)
22 4g56_B MGC81050 protein; prote 100.0 8.7E-37 3E-41 355.2 33.2 314 774-1176 11-343 (357)
23 2pbi_B Guanine nucleotide-bind 100.0 8.8E-36 3E-40 346.3 40.3 282 762-1074 58-354 (354)
24 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3E-35 1E-39 352.8 46.0 315 762-1119 112-442 (445)
25 1r5m_A SIR4-interacting protei 100.0 4.5E-36 1.5E-40 355.3 38.2 333 762-1118 39-424 (425)
26 2ynn_A Coatomer subunit beta'; 100.0 4E-35 1.4E-39 333.1 43.5 286 874-1177 4-303 (304)
27 3mkq_A Coatomer beta'-subunit; 100.0 3.5E-36 1.2E-40 389.1 39.3 381 762-1177 7-461 (814)
28 3frx_A Guanine nucleotide-bind 100.0 2.6E-35 8.8E-40 337.2 41.8 293 873-1177 7-318 (319)
29 4gqb_B Methylosome protein 50; 100.0 6.4E-36 2.2E-40 345.7 36.6 292 824-1177 27-332 (344)
30 4gqb_B Methylosome protein 50; 100.0 1.4E-35 4.9E-40 342.8 39.1 292 765-1078 27-332 (344)
31 3iz6_a 40S ribosomal protein R 100.0 3.2E-36 1.1E-40 353.7 33.4 285 819-1119 58-375 (380)
32 4ery_A WD repeat-containing pr 100.0 7.7E-35 2.6E-39 331.4 43.7 287 872-1175 12-311 (312)
33 3fm0_A Protein CIAO1; WDR39,SG 100.0 9.3E-35 3.2E-39 336.4 44.0 300 872-1178 4-337 (345)
34 3iz6_a 40S ribosomal protein R 100.0 4.1E-36 1.4E-40 352.8 30.7 286 762-1078 60-376 (380)
35 4ery_A WD repeat-containing pr 100.0 5.8E-35 2E-39 332.5 39.3 282 762-1076 17-311 (312)
36 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.3E-35 1.1E-39 340.2 37.9 289 763-1079 10-337 (345)
37 3vl1_A 26S proteasome regulato 100.0 3.2E-35 1.1E-39 348.8 38.7 319 849-1176 66-419 (420)
38 2pm9_A Protein WEB1, protein t 100.0 1.1E-36 3.6E-41 360.7 25.4 336 826-1177 11-415 (416)
39 4g56_B MGC81050 protein; prote 100.0 1.6E-35 5.3E-40 344.7 34.4 285 765-1078 39-344 (357)
40 2hes_X YDR267CP; beta-propelle 100.0 2.4E-34 8.1E-39 330.8 41.7 285 819-1118 6-327 (330)
41 3frx_A Guanine nucleotide-bind 100.0 2.9E-34 1E-38 328.4 42.1 285 818-1118 8-316 (319)
42 4aow_A Guanine nucleotide-bind 100.0 4.1E-34 1.4E-38 328.4 43.2 313 856-1178 9-339 (340)
43 1gxr_A ESG1, transducin-like e 100.0 4.6E-34 1.6E-38 326.9 43.4 314 767-1117 8-335 (337)
44 2xzm_R RACK1; ribosome, transl 100.0 2.3E-34 7.8E-39 332.8 41.2 296 874-1177 12-341 (343)
45 1erj_A Transcriptional repress 100.0 2.5E-34 8.6E-39 339.1 40.6 281 763-1077 59-389 (393)
46 1gxr_A ESG1, transducin-like e 100.0 3.4E-34 1.2E-38 328.0 40.2 315 826-1175 8-336 (337)
47 2hes_X YDR267CP; beta-propelle 100.0 4.9E-34 1.7E-38 328.2 41.5 292 873-1177 4-329 (330)
48 2xzm_R RACK1; ribosome, transl 100.0 1.2E-33 4.2E-38 326.7 42.0 291 819-1119 13-340 (343)
49 2pm9_A Protein WEB1, protein t 100.0 1.4E-35 4.9E-40 351.0 25.0 323 768-1119 12-414 (416)
50 3v7d_B Cell division control p 100.0 9.7E-33 3.3E-37 332.6 50.1 317 819-1174 113-461 (464)
51 3v7d_B Cell division control p 100.0 1.8E-33 6.1E-38 339.0 43.4 315 762-1116 115-460 (464)
52 1erj_A Transcriptional repress 100.0 2.2E-33 7.6E-38 331.0 42.8 277 824-1118 61-388 (393)
53 3gre_A Serine/threonine-protei 100.0 1.8E-34 6.3E-39 344.7 33.6 336 775-1173 34-437 (437)
54 4aow_A Guanine nucleotide-bind 100.0 1.2E-33 4.1E-38 324.5 39.0 288 763-1079 33-339 (340)
55 2j04_B YDR362CP, TAU91; beta p 100.0 7.2E-35 2.5E-39 354.5 26.0 334 826-1176 132-517 (524)
56 3mkq_A Coatomer beta'-subunit; 100.0 8.9E-33 3E-37 357.2 44.4 340 819-1176 5-386 (814)
57 3vl1_A 26S proteasome regulato 100.0 1.8E-33 6E-38 333.9 33.0 312 772-1118 60-418 (420)
58 1k8k_C P40, ARP2/3 complex 41 100.0 2.2E-33 7.4E-38 326.7 32.8 324 822-1177 3-362 (372)
59 1p22_A F-BOX/WD-repeat protein 100.0 9.4E-33 3.2E-37 330.2 38.3 286 877-1177 127-415 (435)
60 3zwl_B Eukaryotic translation 100.0 6.5E-32 2.2E-36 313.0 43.1 285 874-1177 23-347 (369)
61 1sq9_A Antiviral protein SKI8; 100.0 6.9E-33 2.4E-37 325.9 35.3 287 875-1178 8-397 (397)
62 3dm0_A Maltose-binding peripla 100.0 5.2E-32 1.8E-36 343.9 44.6 306 820-1176 375-693 (694)
63 3odt_A Protein DOA1; ubiquitin 100.0 3.7E-32 1.3E-36 307.8 38.6 282 762-1081 12-300 (313)
64 3zwl_B Eukaryotic translation 100.0 7.2E-32 2.5E-36 312.6 40.7 290 754-1078 18-347 (369)
65 1p22_A F-BOX/WD-repeat protein 100.0 3.4E-32 1.2E-36 325.3 36.9 280 820-1120 126-415 (435)
66 1sq9_A Antiviral protein SKI8; 100.0 5.4E-32 1.9E-36 318.3 35.2 284 819-1119 8-395 (397)
67 3k26_A Polycomb protein EED; W 100.0 9.1E-32 3.1E-36 311.7 35.9 287 877-1176 12-366 (366)
68 3odt_A Protein DOA1; ubiquitin 100.0 5.1E-31 1.8E-35 298.4 40.7 280 818-1121 9-298 (313)
69 3k26_A Polycomb protein EED; W 100.0 4.6E-32 1.6E-36 314.1 32.8 288 821-1118 12-365 (366)
70 3ei3_B DNA damage-binding prot 100.0 8.6E-32 2.9E-36 315.6 34.2 277 763-1077 68-382 (383)
71 3i2n_A WD repeat-containing pr 100.0 1.3E-31 4.5E-36 309.4 34.6 283 764-1078 14-354 (357)
72 4a11_B DNA excision repair pro 100.0 1.2E-31 4.3E-36 315.5 34.6 334 762-1118 37-404 (408)
73 3dm0_A Maltose-binding peripla 100.0 2.2E-31 7.6E-36 338.0 39.2 284 764-1076 378-692 (694)
74 3ei3_B DNA damage-binding prot 100.0 4.3E-31 1.5E-35 309.6 38.6 280 819-1118 65-381 (383)
75 4a11_B DNA excision repair pro 100.0 3.8E-31 1.3E-35 311.3 36.1 341 783-1175 18-404 (408)
76 1k8k_C P40, ARP2/3 complex 41 100.0 4.8E-31 1.6E-35 306.8 36.1 284 765-1078 5-362 (372)
77 3gre_A Serine/threonine-protei 100.0 1E-31 3.6E-36 320.9 31.2 334 747-1116 35-437 (437)
78 3dwl_C Actin-related protein 2 100.0 1.3E-32 4.5E-37 321.5 21.6 327 821-1174 5-377 (377)
79 3i2n_A WD repeat-containing pr 100.0 3.8E-31 1.3E-35 305.6 33.6 287 819-1119 10-353 (357)
80 2j04_A TAU60, YPL007P, hypothe 100.0 1.8E-32 6E-37 324.8 21.9 308 769-1165 16-350 (588)
81 2j04_B YDR362CP, TAU91; beta p 100.0 2.6E-32 9E-37 332.0 23.5 316 776-1119 169-517 (524)
82 4aez_A CDC20, WD repeat-contai 100.0 1.5E-30 5E-35 307.6 37.9 266 851-1120 103-381 (401)
83 4h5i_A Guanine nucleotide-exch 100.0 3E-31 1E-35 309.4 31.1 292 827-1177 14-344 (365)
84 4e54_B DNA damage-binding prot 100.0 9.8E-32 3.4E-36 321.4 26.6 301 819-1178 111-432 (435)
85 2pm7_B Protein transport prote 100.0 2.3E-30 7.8E-35 292.8 35.9 246 820-1077 2-285 (297)
86 4gga_A P55CDC, cell division c 100.0 2.4E-30 8.3E-35 307.8 37.8 272 772-1078 109-396 (420)
87 4aez_A CDC20, WD repeat-contai 100.0 1.6E-30 5.5E-35 307.3 36.0 287 759-1079 82-382 (401)
88 4ggc_A P55CDC, cell division c 100.0 3.7E-30 1.3E-34 292.3 37.0 272 772-1078 29-316 (318)
89 3dwl_C Actin-related protein 2 100.0 8.7E-32 3E-36 314.5 23.3 279 766-1075 9-377 (377)
90 4e54_B DNA damage-binding prot 100.0 1.5E-31 5.3E-36 319.7 25.7 284 764-1079 115-432 (435)
91 4gga_A P55CDC, cell division c 100.0 2.7E-29 9.2E-34 298.8 40.5 264 851-1119 116-395 (420)
92 2pm7_B Protein transport prote 100.0 2E-29 6.8E-34 285.1 36.2 248 917-1175 3-284 (297)
93 3bg1_A Protein SEC13 homolog; 100.0 1.8E-30 6.2E-35 296.5 26.5 256 821-1088 7-305 (316)
94 3jrp_A Fusion protein of prote 100.0 2.1E-29 7.1E-34 293.3 35.9 248 819-1078 3-288 (379)
95 1yfq_A Cell cycle arrest prote 100.0 2.3E-29 7.9E-34 289.2 34.8 279 820-1116 4-321 (342)
96 3f3f_A Nucleoporin SEH1; struc 100.0 8.5E-30 2.9E-34 291.8 30.7 302 763-1089 6-350 (351)
97 4h5i_A Guanine nucleotide-exch 100.0 5.1E-30 1.7E-34 299.0 28.5 298 767-1078 13-344 (365)
98 4ggc_A P55CDC, cell division c 100.0 2.4E-28 8.3E-33 277.3 41.6 271 885-1177 29-316 (318)
99 3f3f_A Nucleoporin SEH1; struc 100.0 2.4E-29 8.3E-34 288.0 33.4 284 877-1177 5-338 (351)
100 3dw8_B Serine/threonine-protei 100.0 3.5E-29 1.2E-33 299.2 33.5 289 882-1175 27-445 (447)
101 1yfq_A Cell cycle arrest prote 100.0 9E-29 3.1E-33 284.2 34.7 272 877-1168 5-315 (342)
102 3mmy_A MRNA export factor; mRN 100.0 8.7E-29 3E-33 286.5 34.7 286 872-1174 28-344 (368)
103 3mmy_A MRNA export factor; mRN 100.0 9.7E-29 3.3E-33 286.1 33.7 282 819-1118 31-345 (368)
104 3bg1_A Protein SEC13 homolog; 100.0 2.5E-29 8.4E-34 287.1 26.8 247 918-1175 8-292 (316)
105 3jrp_A Fusion protein of prote 100.0 4.3E-28 1.5E-32 282.2 33.9 254 913-1176 1-287 (379)
106 3dw8_B Serine/threonine-protei 100.0 2.3E-28 7.7E-33 292.2 32.3 279 825-1118 26-445 (447)
107 2aq5_A Coronin-1A; WD40 repeat 100.0 5.1E-28 1.7E-32 285.8 30.5 281 772-1081 38-346 (402)
108 3vu4_A KMHSV2; beta-propeller 100.0 1.3E-27 4.4E-32 277.6 32.8 278 819-1119 11-336 (355)
109 3jro_A Fusion protein of prote 100.0 8.1E-29 2.8E-33 316.8 23.8 247 820-1078 2-286 (753)
110 2j04_A TAU60, YPL007P, hypothe 100.0 8E-29 2.7E-33 293.6 21.3 293 745-1108 20-350 (588)
111 2aq5_A Coronin-1A; WD40 repeat 100.0 4.8E-28 1.6E-32 286.0 27.6 277 887-1177 40-343 (402)
112 3vu4_A KMHSV2; beta-propeller 100.0 3.6E-27 1.2E-31 273.8 32.1 292 873-1176 9-336 (355)
113 3bws_A Protein LP49; two-domai 100.0 4.5E-26 1.5E-30 271.3 41.6 300 856-1176 94-432 (433)
114 2vdu_B TRNA (guanine-N(7)-)-me 100.0 4E-26 1.4E-30 274.0 35.4 279 882-1175 5-390 (450)
115 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2E-26 6.9E-31 276.6 32.7 295 769-1077 5-391 (450)
116 2w18_A PALB2, fancn, partner a 100.0 1.8E-26 6.2E-31 257.6 29.6 254 782-1075 56-355 (356)
117 2xyi_A Probable histone-bindin 99.9 3.4E-26 1.1E-30 273.0 32.3 247 820-1078 121-411 (430)
118 3lrv_A PRE-mRNA-splicing facto 99.9 3.6E-26 1.2E-30 263.8 28.0 270 775-1118 43-332 (343)
119 3bws_A Protein LP49; two-domai 99.9 7.5E-25 2.6E-29 260.8 40.1 279 819-1118 115-431 (433)
120 3lrv_A PRE-mRNA-splicing facto 99.9 2.4E-26 8.3E-31 265.3 26.3 262 890-1175 45-332 (343)
121 1l0q_A Surface layer protein; 99.9 1.2E-24 4E-29 255.3 40.8 317 852-1177 3-343 (391)
122 1l0q_A Surface layer protein; 99.9 1.4E-24 4.8E-29 254.7 41.1 298 781-1119 3-342 (391)
123 4gq1_A NUP37; propeller, trans 99.9 6.2E-27 2.1E-31 275.8 20.9 249 888-1174 96-387 (393)
124 3jro_A Fusion protein of prote 99.9 3.4E-26 1.2E-30 292.5 29.4 250 917-1176 3-285 (753)
125 2xyi_A Probable histone-bindin 99.9 5.1E-26 1.7E-30 271.4 27.9 270 905-1176 109-410 (430)
126 4gq1_A NUP37; propeller, trans 99.9 2.9E-26 9.8E-31 270.1 24.8 296 770-1076 20-388 (393)
127 2w18_A PALB2, fancn, partner a 99.9 4.6E-25 1.6E-29 246.3 28.2 260 895-1175 56-356 (356)
128 1k32_A Tricorn protease; prote 99.9 6.6E-24 2.3E-28 281.6 37.3 360 757-1175 41-501 (1045)
129 1k32_A Tricorn protease; prote 99.9 1.1E-23 3.6E-28 279.6 35.8 399 757-1178 88-602 (1045)
130 1nir_A Nitrite reductase; hemo 99.9 5.2E-23 1.8E-27 251.9 36.5 315 848-1178 146-516 (543)
131 1nir_A Nitrite reductase; hemo 99.9 4.4E-23 1.5E-27 252.6 35.3 311 775-1120 144-515 (543)
132 2hqs_A Protein TOLB; TOLB, PAL 99.9 3.8E-22 1.3E-26 236.6 31.4 287 849-1158 72-410 (415)
133 2ecf_A Dipeptidyl peptidase IV 99.9 3.6E-21 1.2E-25 246.0 35.0 317 827-1176 36-459 (741)
134 2ecf_A Dipeptidyl peptidase IV 99.9 8.8E-21 3E-25 242.3 35.0 316 768-1120 36-460 (741)
135 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.1E-20 3.6E-25 224.1 30.9 266 889-1177 70-388 (415)
136 1xfd_A DIP, dipeptidyl aminope 99.9 5.6E-21 1.9E-25 243.4 29.6 344 770-1164 18-428 (723)
137 3u4y_A Uncharacterized protein 99.8 2.5E-18 8.6E-23 196.3 34.4 278 889-1177 5-305 (331)
138 3vgz_A Uncharacterized protein 99.8 5.1E-18 1.8E-22 195.2 37.0 260 888-1166 47-334 (353)
139 2z3z_A Dipeptidyl aminopeptida 99.8 6.3E-19 2.2E-23 223.8 32.0 272 828-1121 82-437 (706)
140 2z3z_A Dipeptidyl aminopeptida 99.8 6.9E-19 2.4E-23 223.5 31.5 301 851-1177 35-436 (706)
141 3u4y_A Uncharacterized protein 99.8 4E-18 1.4E-22 194.6 34.3 267 850-1120 9-305 (331)
142 1ri6_A Putative isomerase YBHE 99.8 2E-18 7E-23 197.4 31.8 266 895-1175 7-307 (343)
143 3vgz_A Uncharacterized protein 99.8 8.4E-18 2.9E-22 193.4 35.8 266 766-1068 38-335 (353)
144 1ri6_A Putative isomerase YBHE 99.8 5.2E-18 1.8E-22 194.0 32.6 251 824-1088 34-321 (343)
145 1xfd_A DIP, dipeptidyl aminope 99.8 4.6E-19 1.6E-23 225.6 26.0 303 848-1176 25-393 (723)
146 1pby_B Quinohemoprotein amine 99.8 2E-18 6.7E-23 197.0 28.6 262 894-1178 2-312 (337)
147 2ojh_A Uncharacterized protein 99.8 1.2E-18 4.2E-23 194.1 22.6 251 898-1167 17-293 (297)
148 1pby_B Quinohemoprotein amine 99.8 2.2E-17 7.4E-22 188.3 30.3 259 852-1120 2-311 (337)
149 2ojh_A Uncharacterized protein 99.8 1.1E-17 3.6E-22 186.4 25.0 249 856-1110 17-293 (297)
150 3o4h_A Acylamino-acid-releasin 99.8 6.3E-18 2.2E-22 209.6 24.2 263 769-1076 22-314 (582)
151 1z68_A Fibroblast activation p 99.8 1.2E-17 4.1E-22 212.6 25.7 312 848-1177 24-444 (719)
152 3hfq_A Uncharacterized protein 99.8 1.7E-16 5.9E-21 182.6 32.9 264 902-1177 15-320 (347)
153 1z68_A Fibroblast activation p 99.7 1.4E-17 4.7E-22 212.0 19.8 311 773-1121 20-445 (719)
154 3scy_A Hypothetical bacterial 99.7 3.1E-15 1.1E-19 173.2 38.0 290 851-1154 13-360 (361)
155 1jmx_B Amine dehydrogenase; ox 99.7 5.9E-16 2E-20 177.4 27.6 266 889-1177 7-326 (349)
156 3o4h_A Acylamino-acid-releasin 99.7 4.2E-16 1.4E-20 193.2 27.9 268 820-1118 13-314 (582)
157 2oit_A Nucleoporin 214KDA; NH2 99.7 3.8E-16 1.3E-20 185.8 26.1 209 861-1078 23-279 (434)
158 3scy_A Hypothetical bacterial 99.7 4.3E-15 1.5E-19 172.0 34.3 268 894-1175 14-336 (361)
159 3pe7_A Oligogalacturonate lyas 99.7 2.1E-15 7.1E-20 176.1 31.0 296 873-1175 20-381 (388)
160 3hfq_A Uncharacterized protein 99.7 3.9E-15 1.3E-19 171.3 32.6 247 824-1083 36-325 (347)
161 1jmx_B Amine dehydrogenase; ox 99.7 2.4E-15 8.3E-20 172.3 30.5 256 846-1120 6-326 (349)
162 4a5s_A Dipeptidyl peptidase 4 99.7 1.4E-15 4.7E-20 194.1 31.0 318 829-1177 18-450 (740)
163 2oit_A Nucleoporin 214KDA; NH2 99.7 9.5E-16 3.2E-20 182.4 22.5 235 828-1076 37-332 (434)
164 3c5m_A Oligogalacturonate lyas 99.7 3.8E-15 1.3E-19 174.1 23.9 282 847-1174 43-380 (396)
165 2oiz_A Aromatic amine dehydrog 99.7 1.2E-14 4.2E-19 168.5 27.6 264 891-1177 13-335 (361)
166 3pe7_A Oligogalacturonate lyas 99.6 3.2E-14 1.1E-18 166.1 29.5 286 819-1118 22-381 (388)
167 1jof_A Carboxy-CIS,CIS-muconat 99.6 1.6E-14 5.4E-19 167.8 26.6 270 895-1177 4-342 (365)
168 2oiz_A Aromatic amine dehydrog 99.6 3.4E-13 1.1E-17 156.3 33.1 290 849-1158 13-360 (361)
169 4a5s_A Dipeptidyl peptidase 4 99.6 4.2E-14 1.4E-18 180.3 27.1 312 771-1120 19-450 (740)
170 3azo_A Aminopeptidase; POP fam 99.6 3E-14 1E-18 179.3 25.0 282 820-1121 16-371 (662)
171 3c5m_A Oligogalacturonate lyas 99.6 1.8E-14 6E-19 168.4 21.1 271 771-1079 38-386 (396)
172 1jof_A Carboxy-CIS,CIS-muconat 99.6 3E-13 1E-17 156.9 30.8 239 826-1078 38-342 (365)
173 3azo_A Aminopeptidase; POP fam 99.6 1.1E-13 3.7E-18 174.2 27.5 286 763-1081 18-373 (662)
174 3dsm_A Uncharacterized protein 99.6 1.2E-12 4E-17 149.6 29.9 256 901-1175 15-301 (328)
175 1qks_A Cytochrome CD1 nitrite 99.5 5.3E-11 1.8E-15 145.2 43.5 320 849-1178 165-540 (567)
176 3fvz_A Peptidyl-glycine alpha- 99.5 1.9E-12 6.4E-17 147.9 29.0 239 923-1176 23-322 (329)
177 3fvz_A Peptidyl-glycine alpha- 99.5 1.4E-11 4.6E-16 140.8 33.7 236 827-1077 23-322 (329)
178 1q7f_A NHL, brain tumor CG1071 99.5 8.5E-12 2.9E-16 139.0 31.1 235 921-1176 27-280 (286)
179 1q7f_A NHL, brain tumor CG1071 99.5 1.6E-11 5.4E-16 136.8 32.5 234 825-1078 27-281 (286)
180 1qks_A Cytochrome CD1 nitrite 99.5 5.6E-11 1.9E-15 145.0 38.2 307 781-1121 168-540 (567)
181 2dg1_A DRP35, lactonase; beta 99.5 2.2E-11 7.4E-16 138.9 31.7 262 769-1068 6-301 (333)
182 2gop_A Trilobed protease; beta 99.5 6.1E-12 2.1E-16 144.2 27.0 255 769-1078 15-331 (347)
183 2mad_H Methylamine dehydrogena 99.5 1.3E-10 4.3E-15 134.9 37.3 268 890-1178 29-352 (373)
184 2xdw_A Prolyl endopeptidase; a 99.5 1.2E-11 4E-16 157.0 31.2 240 825-1079 122-416 (710)
185 2bkl_A Prolyl endopeptidase; m 99.5 3.8E-12 1.3E-16 161.1 25.9 245 825-1084 118-404 (695)
186 2gop_A Trilobed protease; beta 99.4 1.6E-11 5.5E-16 140.7 28.5 245 850-1118 23-330 (347)
187 2dg1_A DRP35, lactonase; beta 99.4 1.8E-11 6.1E-16 139.6 27.7 260 889-1166 13-300 (333)
188 2z2n_A Virginiamycin B lyase; 99.4 1.5E-09 5.1E-14 120.9 39.6 271 884-1177 15-296 (299)
189 3sjl_D Methylamine dehydrogena 99.4 1.7E-10 5.8E-15 132.3 32.1 268 890-1178 41-365 (386)
190 3e5z_A Putative gluconolactona 99.4 6.3E-11 2.2E-15 132.7 27.6 240 913-1176 17-286 (296)
191 2xdw_A Prolyl endopeptidase; a 99.4 1.1E-10 3.8E-15 147.9 32.7 231 888-1121 131-416 (710)
192 2z2n_A Virginiamycin B lyase; 99.4 2.2E-09 7.4E-14 119.6 39.4 276 823-1119 10-295 (299)
193 3no2_A Uncharacterized protein 99.4 7.8E-11 2.7E-15 130.8 26.4 213 933-1163 4-230 (276)
194 3q7m_A Lipoprotein YFGL, BAMB; 99.4 5.5E-10 1.9E-14 129.8 34.7 297 851-1173 53-375 (376)
195 2bkl_A Prolyl endopeptidase; m 99.4 1.8E-11 6.3E-16 154.7 23.7 266 849-1121 77-399 (695)
196 3dsm_A Uncharacterized protein 99.4 1.9E-10 6.6E-15 131.1 29.6 252 859-1118 15-301 (328)
197 3no2_A Uncharacterized protein 99.3 2.7E-10 9.1E-15 126.4 28.0 209 849-1065 3-231 (276)
198 1yr2_A Prolyl oligopeptidase; 99.3 9.4E-11 3.2E-15 149.3 27.2 239 825-1079 160-443 (741)
199 3e5z_A Putative gluconolactona 99.3 1.8E-10 6E-15 129.1 25.8 238 819-1078 19-287 (296)
200 1rwi_B Serine/threonine-protei 99.3 9.7E-11 3.3E-15 128.9 23.1 233 925-1176 25-264 (270)
201 3c75_H MADH, methylamine dehyd 99.3 5.5E-10 1.9E-14 130.4 30.2 269 890-1178 81-404 (426)
202 3q7m_A Lipoprotein YFGL, BAMB; 99.3 1.2E-09 4E-14 127.0 32.5 258 850-1116 102-375 (376)
203 1rwi_B Serine/threonine-protei 99.3 3.1E-10 1.1E-14 124.8 25.4 234 829-1078 25-265 (270)
204 2mad_H Methylamine dehydrogena 99.3 6.9E-09 2.3E-13 120.3 35.7 265 774-1079 26-352 (373)
205 1yr2_A Prolyl oligopeptidase; 99.3 4.1E-10 1.4E-14 143.4 27.1 269 849-1121 116-443 (741)
206 3sjl_D Methylamine dehydrogena 99.2 2.8E-09 9.7E-14 122.2 30.2 281 772-1092 36-378 (386)
207 1kb0_A Quinohemoprotein alcoho 99.2 1.9E-09 6.6E-14 135.0 30.7 266 851-1120 77-508 (677)
208 2qc5_A Streptogramin B lactona 99.2 2.4E-08 8.1E-13 111.1 35.7 270 767-1075 18-298 (300)
209 2qc5_A Streptogramin B lactona 99.2 4.1E-08 1.4E-12 109.1 37.1 270 826-1117 18-298 (300)
210 1yiq_A Quinohemoprotein alcoho 99.2 5.1E-09 1.7E-13 131.4 30.6 265 851-1120 70-506 (689)
211 3hxj_A Pyrrolo-quinoline quino 99.1 2.1E-09 7.2E-14 121.9 22.9 293 774-1118 25-323 (330)
212 1pjx_A Dfpase, DIISOPROPYLFLUO 99.1 1.3E-08 4.4E-13 114.4 28.1 227 888-1119 24-299 (314)
213 3hrp_A Uncharacterized protein 99.1 1.4E-07 4.7E-12 110.8 37.5 245 924-1175 131-409 (409)
214 1pjx_A Dfpase, DIISOPROPYLFLUO 99.1 3.1E-08 1E-12 111.3 30.6 239 823-1078 13-300 (314)
215 3c75_H MADH, methylamine dehyd 99.1 2.3E-08 8E-13 116.7 30.1 257 790-1086 101-409 (426)
216 3hrp_A Uncharacterized protein 99.1 3.8E-08 1.3E-12 115.6 30.7 222 849-1075 140-408 (409)
217 1mda_H Methylamine dehydrogena 99.1 8.1E-09 2.8E-13 118.6 23.3 247 904-1178 47-348 (368)
218 3hxj_A Pyrrolo-quinoline quino 99.1 1.8E-09 6.3E-14 122.3 17.8 290 851-1175 30-323 (330)
219 4a2l_A BT_4663, two-component 99.1 9.7E-07 3.3E-11 113.2 44.7 355 769-1177 88-481 (795)
220 1xip_A Nucleoporin NUP159; bet 99.1 4.1E-09 1.4E-13 121.4 19.8 172 883-1065 39-232 (388)
221 3iuj_A Prolyl endopeptidase; h 99.0 1.5E-08 5.1E-13 127.8 26.6 244 825-1084 126-412 (693)
222 4a2l_A BT_4663, two-component 99.0 7E-07 2.4E-11 114.5 42.2 358 771-1177 133-527 (795)
223 3g4e_A Regucalcin; six bladed 99.0 2.1E-07 7.3E-12 104.1 32.4 226 920-1164 9-260 (297)
224 1yiq_A Quinohemoprotein alcoho 99.0 1.9E-08 6.6E-13 126.1 26.3 188 892-1081 69-342 (689)
225 1xip_A Nucleoporin NUP159; bet 99.0 3.4E-09 1.2E-13 122.1 17.6 182 770-983 39-232 (388)
226 1kb0_A Quinohemoprotein alcoho 99.0 3E-08 1E-12 124.1 25.6 267 893-1178 77-509 (677)
227 3iuj_A Prolyl endopeptidase; h 99.0 2E-08 7E-13 126.6 22.5 238 922-1177 127-406 (693)
228 2qe8_A Uncharacterized protein 98.9 7.5E-08 2.6E-12 110.3 23.8 248 888-1166 23-311 (343)
229 3g4e_A Regucalcin; six bladed 98.9 5.4E-07 1.8E-11 100.8 30.1 210 849-1066 22-261 (297)
230 1kv9_A Type II quinohemoprotei 98.9 1.5E-07 5.1E-12 117.7 27.9 266 851-1120 66-489 (668)
231 3dr2_A Exported gluconolactona 98.9 1.9E-07 6.7E-12 104.8 26.2 232 915-1171 36-302 (305)
232 2hz6_A Endoplasmic reticulum t 98.9 8.1E-10 2.8E-14 128.1 5.4 253 850-1118 8-278 (369)
233 2hz6_A Endoplasmic reticulum t 98.9 6.2E-10 2.1E-14 129.1 3.5 182 892-1080 8-195 (369)
234 2ghs_A AGR_C_1268P; regucalcin 98.8 2.4E-06 8.1E-11 96.9 31.6 209 849-1067 58-292 (326)
235 3dr2_A Exported gluconolactona 98.8 4E-07 1.4E-11 102.2 24.9 229 819-1069 36-299 (305)
236 2ghs_A AGR_C_1268P; regucalcin 98.8 2.1E-06 7.2E-11 97.4 30.9 213 888-1109 55-292 (326)
237 2ad6_A Methanol dehydrogenase 98.8 1.8E-06 6E-11 105.8 31.2 228 892-1120 114-495 (571)
238 3v9f_A Two-component system se 98.8 2.2E-05 7.4E-10 100.4 41.9 358 770-1177 116-525 (781)
239 2qe8_A Uncharacterized protein 98.8 2.6E-07 8.8E-12 105.8 20.7 255 828-1112 17-314 (343)
240 1w6s_A Methanol dehydrogenase 98.7 3E-06 1E-10 103.7 30.5 223 896-1120 124-504 (599)
241 3v9f_A Two-component system se 98.7 0.00012 4.1E-09 93.4 47.0 320 828-1177 66-437 (781)
242 2ece_A 462AA long hypothetical 98.7 5.1E-06 1.8E-10 95.8 30.1 227 934-1164 95-399 (462)
243 1mda_H Methylamine dehydrogena 98.7 3.9E-07 1.3E-11 104.6 20.8 253 789-1089 47-356 (368)
244 1kv9_A Type II quinohemoprotei 98.6 1.4E-06 4.7E-11 108.9 23.8 188 893-1081 66-337 (668)
245 1flg_A Protein (quinoprotein e 98.6 1.5E-05 5E-10 97.7 30.8 228 892-1120 116-517 (582)
246 2ad6_A Methanol dehydrogenase 98.5 1.9E-05 6.4E-10 96.6 29.5 186 893-1082 62-340 (571)
247 1npe_A Nidogen, entactin; glyc 98.5 0.00011 3.6E-09 80.4 32.4 217 828-1059 36-263 (267)
248 1w6s_A Methanol dehydrogenase 98.5 3.8E-05 1.3E-09 94.0 31.2 188 893-1083 62-348 (599)
249 2ece_A 462AA long hypothetical 98.5 3.7E-05 1.3E-09 88.7 28.2 217 891-1107 93-399 (462)
250 2iwa_A Glutamine cyclotransfer 98.5 2E-05 6.9E-10 85.5 24.7 189 888-1078 27-238 (266)
251 1fwx_A Nitrous oxide reductase 98.5 7.8E-06 2.7E-10 97.5 22.4 276 896-1177 18-432 (595)
252 1npe_A Nidogen, entactin; glyc 98.4 0.00017 5.8E-09 78.8 30.8 222 894-1120 2-239 (267)
253 3nol_A Glutamine cyclotransfer 98.4 3.3E-05 1.1E-09 82.9 23.8 174 889-1066 50-244 (262)
254 1flg_A Protein (quinoprotein e 98.4 0.00019 6.5E-09 87.8 33.6 187 893-1081 68-359 (582)
255 1k3i_A Galactose oxidase precu 98.3 2.8E-05 9.6E-10 97.1 23.6 265 888-1165 192-530 (656)
256 3nok_A Glutaminyl cyclase; bet 98.3 4E-05 1.4E-09 82.1 20.0 170 892-1065 64-253 (268)
257 3mbr_X Glutamine cyclotransfer 98.3 0.00021 7.1E-09 76.0 25.1 170 893-1065 31-222 (243)
258 2iwa_A Glutamine cyclotransfer 98.3 0.00032 1.1E-08 76.1 27.1 202 914-1119 10-237 (266)
259 3nol_A Glutamine cyclotransfer 98.3 0.00011 3.7E-09 78.8 22.9 190 914-1108 32-244 (262)
260 3nok_A Glutaminyl cyclase; bet 98.2 9.7E-05 3.3E-09 79.2 20.9 167 914-1086 44-219 (268)
261 1k3i_A Galactose oxidase precu 98.2 5E-05 1.7E-09 94.8 21.1 260 849-1108 195-530 (656)
262 3mbr_X Glutamine cyclotransfer 98.2 0.00051 1.7E-08 73.0 25.5 168 914-1086 10-188 (243)
263 3s94_A LRP-6, low-density lipo 98.1 0.021 7.1E-07 70.2 41.5 351 768-1164 39-453 (619)
264 1fwx_A Nitrous oxide reductase 98.1 0.00015 5.1E-09 86.6 21.4 229 891-1122 99-434 (595)
265 2fp8_A Strictosidine synthase; 98.1 0.00085 2.9E-08 75.4 27.1 235 924-1176 19-313 (322)
266 2p4o_A Hypothetical protein; p 98.0 0.0037 1.3E-07 69.6 31.2 235 913-1166 22-278 (306)
267 3v64_C Agrin; beta propeller, 98.0 0.0057 1.9E-07 69.6 31.3 240 772-1044 37-284 (349)
268 2fp8_A Strictosidine synthase; 97.9 0.0022 7.6E-08 71.9 27.1 225 888-1118 25-312 (322)
269 3v65_B Low-density lipoprotein 97.9 0.0057 2E-07 70.6 30.2 214 828-1054 116-337 (386)
270 2xe4_A Oligopeptidase B; hydro 97.9 0.00045 1.5E-08 87.5 22.6 233 770-1037 175-460 (751)
271 3s94_A LRP-6, low-density lipo 97.9 0.075 2.6E-06 65.2 40.8 358 769-1175 84-509 (619)
272 1ijq_A LDL receptor, low-densi 97.8 0.023 7.9E-07 63.5 32.6 220 943-1177 9-239 (316)
273 3v64_C Agrin; beta propeller, 97.8 0.0098 3.4E-07 67.6 29.8 220 895-1119 46-275 (349)
274 2xzh_A Clathrin heavy chain 1; 97.8 0.047 1.6E-06 59.7 32.5 252 860-1120 48-333 (365)
275 3p5b_L Low density lipoprotein 97.8 0.036 1.2E-06 64.1 34.1 224 895-1120 85-321 (400)
276 1ijq_A LDL receptor, low-densi 97.8 0.036 1.2E-06 61.8 33.1 223 896-1121 4-240 (316)
277 2xbg_A YCF48-like protein; pho 97.8 0.041 1.4E-06 61.7 33.7 267 827-1116 35-319 (327)
278 3tc9_A Hypothetical hydrolase; 97.7 0.0046 1.6E-07 72.5 25.9 150 925-1077 138-301 (430)
279 3sov_A LRP-6, low-density lipo 97.7 0.019 6.4E-07 64.3 29.8 206 828-1044 35-247 (318)
280 2xzh_A Clathrin heavy chain 1; 97.7 0.048 1.6E-06 59.7 31.0 224 943-1178 48-292 (365)
281 3v65_B Low-density lipoprotein 97.7 0.028 9.6E-07 64.8 31.7 224 851-1078 87-319 (386)
282 3ei3_A DNA damage-binding prot 97.7 0.23 8E-06 65.1 43.8 359 768-1176 553-999 (1158)
283 4hw6_A Hypothetical protein, I 97.7 0.049 1.7E-06 63.8 33.8 247 925-1175 140-432 (433)
284 3ott_A Two-component system se 97.7 0.28 9.4E-06 61.9 45.1 354 768-1177 21-402 (758)
285 1bpo_A Protein (clathrin); cla 97.7 0.14 4.8E-06 58.2 35.3 253 860-1121 47-333 (494)
286 2p4o_A Hypothetical protein; p 97.7 0.061 2.1E-06 59.5 32.9 221 828-1068 32-279 (306)
287 3ei3_A DNA damage-binding prot 97.7 0.14 4.8E-06 67.2 40.8 302 851-1176 523-913 (1158)
288 2vpj_A Kelch-like protein 12; 97.6 0.0021 7.1E-08 71.3 20.5 217 944-1177 31-279 (301)
289 3p5b_L Low density lipoprotein 97.6 0.059 2E-06 62.4 33.4 218 826-1054 110-339 (400)
290 2vpj_A Kelch-like protein 12; 97.6 0.0051 1.7E-07 68.1 22.3 232 850-1086 14-287 (301)
291 2xbg_A YCF48-like protein; pho 97.6 0.1 3.5E-06 58.5 33.2 279 757-1074 25-319 (327)
292 1bpo_A Protein (clathrin); cla 97.6 0.084 2.9E-06 60.0 31.3 224 943-1178 47-291 (494)
293 3ott_A Two-component system se 97.5 0.4 1.4E-05 60.4 42.9 350 769-1174 63-446 (758)
294 2xe4_A Oligopeptidase B; hydro 97.5 0.0053 1.8E-07 77.6 24.0 236 848-1084 182-465 (751)
295 2xn4_A Kelch-like protein 2; s 97.5 0.0067 2.3E-07 67.2 22.2 225 935-1177 17-277 (302)
296 3ii7_A Kelch-like protein 7; p 97.5 0.0066 2.3E-07 67.4 21.9 223 936-1177 14-273 (306)
297 4a0p_A LRP6, LRP-6, low-densit 97.4 0.48 1.6E-05 58.1 47.7 196 768-997 36-239 (628)
298 3ii7_A Kelch-like protein 7; p 97.4 0.014 4.9E-07 64.6 23.0 222 894-1119 13-272 (306)
299 3sov_A LRP-6, low-density lipo 97.4 0.14 4.7E-06 57.2 30.9 219 860-1079 12-240 (318)
300 3qqz_A Putative uncharacterize 97.4 0.056 1.9E-06 58.0 26.2 205 959-1175 21-252 (255)
301 3kya_A Putative phosphatase; s 97.4 0.047 1.6E-06 64.3 27.8 251 925-1177 140-476 (496)
302 2xn4_A Kelch-like protein 2; s 97.3 0.012 4.1E-07 65.1 21.5 230 851-1082 16-281 (302)
303 3qqz_A Putative uncharacterize 97.3 0.056 1.9E-06 58.0 25.5 195 878-1075 21-251 (255)
304 3m0c_C LDL receptor, low-densi 97.2 0.34 1.2E-05 60.8 35.2 219 901-1120 402-633 (791)
305 3amr_A 3-phytase; beta-propell 97.2 0.087 3E-06 58.8 26.1 181 891-1076 38-262 (355)
306 4a0p_A LRP6, LRP-6, low-densit 97.2 0.85 2.9E-05 55.8 45.3 153 1008-1177 390-550 (628)
307 3m0c_C LDL receptor, low-densi 97.1 0.27 9.2E-06 61.8 32.9 207 827-1044 423-641 (791)
308 4asc_A Kelch repeat and BTB do 97.1 0.029 9.9E-07 62.5 21.6 222 937-1177 8-278 (315)
309 1zgk_A Kelch-like ECH-associat 97.1 0.012 4.3E-07 65.3 18.3 226 933-1177 24-288 (308)
310 3tc9_A Hypothetical hydrolase; 97.1 0.07 2.4E-06 62.4 25.5 222 849-1076 146-429 (430)
311 2p9w_A MAL S 1 allergenic prot 97.1 0.076 2.6E-06 58.7 23.8 158 920-1078 9-216 (334)
312 1zgk_A Kelch-like ECH-associat 97.0 0.024 8.1E-07 63.0 19.6 233 849-1086 23-296 (308)
313 4asc_A Kelch repeat and BTB do 97.0 0.055 1.9E-06 60.2 22.6 218 896-1119 8-277 (315)
314 3amr_A 3-phytase; beta-propell 96.9 0.18 6.1E-06 56.3 24.6 187 975-1175 39-262 (355)
315 2woz_A Kelch repeat and BTB do 96.8 0.13 4.4E-06 57.2 23.5 218 945-1177 25-288 (318)
316 4hw6_A Hypothetical protein, I 96.7 0.25 8.5E-06 57.7 25.3 187 888-1078 145-374 (433)
317 2p9w_A MAL S 1 allergenic prot 96.7 0.036 1.2E-06 61.3 16.7 162 1005-1176 11-215 (334)
318 2woz_A Kelch repeat and BTB do 96.6 0.11 3.6E-06 57.9 21.0 212 904-1119 25-287 (318)
319 1n7d_A LDL receptor, low-densi 96.5 0.0091 3.1E-07 74.6 12.5 214 829-1054 407-633 (699)
320 1n7d_A LDL receptor, low-densi 96.4 0.006 2E-07 76.2 9.5 219 902-1121 385-616 (699)
321 1xi4_A Clathrin heavy chain; a 96.4 0.11 3.8E-06 67.4 20.6 224 943-1178 47-291 (1630)
322 2uvk_A YJHT; unknown function, 96.2 0.16 5.5E-06 57.4 19.7 237 850-1089 19-354 (357)
323 2ism_A Putative oxidoreductase 96.2 1.4 4.8E-05 49.6 27.1 72 923-996 30-115 (352)
324 2uvk_A YJHT; unknown function, 96.1 0.16 5.4E-06 57.4 19.0 227 892-1120 19-343 (357)
325 3kya_A Putative phosphatase; s 96.0 1.1 3.8E-05 52.6 25.7 223 851-1078 152-476 (496)
326 2be1_A Serine/threonine-protei 96.0 0.037 1.3E-06 61.9 12.5 185 934-1121 10-233 (339)
327 1xi4_A Clathrin heavy chain; a 95.9 0.37 1.3E-05 62.7 21.8 213 860-1079 47-291 (1630)
328 2be1_A Serine/threonine-protei 95.6 0.2 6.9E-06 56.0 16.0 185 851-1040 10-236 (339)
329 3qhy_B Beta-lactamase inhibito 95.4 0.32 1.1E-05 53.1 16.6 221 885-1118 25-245 (282)
330 2ism_A Putative oxidoreductase 95.0 2.9 9.8E-05 47.0 23.8 217 829-1065 32-333 (352)
331 2zwa_A Leucine carboxyl methyl 94.4 0.96 3.3E-05 56.2 19.3 177 944-1120 412-636 (695)
332 3a9g_A Putative uncharacterize 94.4 8.3 0.00028 43.2 28.9 73 923-996 28-115 (354)
333 3qhy_B Beta-lactamase inhibito 94.3 1.9 6.5E-05 46.9 19.4 206 860-1077 41-246 (282)
334 2zwa_A Leucine carboxyl methyl 94.2 0.89 3E-05 56.5 18.5 189 850-1039 397-639 (695)
335 3sre_A PON1, serum paraoxonase 93.4 12 0.0004 41.9 24.0 188 965-1166 50-287 (355)
336 1cru_A Protein (soluble quinop 93.0 17 0.00057 42.3 27.9 61 923-983 26-98 (454)
337 3sre_A PON1, serum paraoxonase 92.6 16 0.00054 40.9 25.6 164 942-1109 81-287 (355)
338 3pbp_A Nucleoporin NUP82; beta 92.4 6.8 0.00023 44.6 19.9 137 933-1072 31-207 (452)
339 3s25_A Hypothetical 7-bladed b 92.2 15 0.00053 39.9 26.8 232 849-1107 23-280 (302)
340 3sbq_A Nitrous-oxide reductase 91.9 12 0.00042 43.9 21.5 263 896-1164 73-453 (638)
341 3kci_A Probable E3 ubiquitin-p 91.4 23 0.00077 40.1 31.1 244 926-1175 55-344 (389)
342 3pbp_A Nucleoporin NUP82; beta 91.0 12 0.0004 42.7 19.8 140 889-1031 28-208 (452)
343 3mvd_K Regulator of chromosome 89.3 34 0.0012 39.0 37.0 223 851-1077 84-374 (423)
344 2g8s_A Glucose/sorbosone dehyd 88.9 33 0.0011 38.2 23.6 57 1008-1064 272-340 (353)
345 4d9s_A UVB-resistance protein 87.6 43 0.0015 38.0 38.4 285 882-1175 14-356 (406)
346 2g8s_A Glucose/sorbosone dehyd 87.2 41 0.0014 37.3 26.6 71 924-995 18-107 (353)
347 1tl2_A L10, protein (tachylect 86.7 4.5 0.00015 41.8 11.4 139 965-1111 41-202 (236)
348 3uc1_A DNA gyrase subunit A; D 86.2 44 0.0015 36.8 24.4 265 894-1167 4-321 (327)
349 3a9g_A Putative uncharacterize 84.6 54 0.0019 36.4 27.6 221 828-1065 29-330 (354)
350 1tl2_A L10, protein (tachylect 83.4 17 0.00059 37.5 13.9 177 976-1174 4-206 (236)
351 3s25_A Hypothetical 7-bladed b 81.6 64 0.0022 35.0 28.5 170 849-1034 62-254 (302)
352 3b7f_A Glycosyl hydrolase, BNR 79.3 86 0.0029 35.1 23.9 135 934-1071 22-202 (394)
353 1cru_A Protein (soluble quinop 75.2 34 0.0012 39.6 15.2 112 1046-1165 26-163 (454)
354 4d9s_A UVB-resistance protein 74.4 1.2E+02 0.0041 34.2 38.4 264 851-1119 25-357 (406)
355 3b7f_A Glycosyl hydrolase, BNR 73.0 1.2E+02 0.0042 33.7 25.6 177 893-1074 22-259 (394)
356 3das_A Putative oxidoreductase 71.6 1.3E+02 0.0043 33.3 27.7 229 823-1065 27-326 (347)
357 3kci_A Probable E3 ubiquitin-p 71.5 1.3E+02 0.0046 33.5 34.5 265 851-1119 10-345 (389)
358 4hvt_A Ritya.17583.B, post-pro 68.5 2.2E+02 0.0075 34.8 22.7 172 860-1034 215-429 (711)
359 3of7_A Regulator of chromosome 65.4 2E+02 0.0067 33.2 22.5 109 1007-1119 148-285 (473)
360 3q6k_A 43.2 kDa salivary prote 63.1 1.9E+02 0.0066 32.3 23.7 168 986-1164 123-342 (381)
361 1a12_A RCC1, regulator of chro 58.2 2.4E+02 0.0081 31.7 33.1 239 924-1175 59-364 (413)
362 1v54_E Cytochrome C oxidase po 57.3 18 0.00062 32.0 5.7 50 624-677 46-96 (109)
363 3das_A Putative oxidoreductase 55.8 2.4E+02 0.0082 31.0 29.8 79 917-995 25-116 (347)
364 3no0_A DNA gyrase subunit A; D 55.7 2.1E+02 0.0072 30.3 20.3 178 851-1034 35-245 (276)
365 3mvd_K Regulator of chromosome 52.8 2.9E+02 0.0099 31.0 41.3 229 885-1119 76-374 (423)
366 3sbq_A Nitrous-oxide reductase 52.6 3.5E+02 0.012 32.0 24.4 235 937-1176 73-408 (638)
367 1suu_A DNA gyrase subunit A; t 51.1 2.6E+02 0.009 30.1 27.2 183 891-1076 6-230 (312)
368 3q6k_A 43.2 kDa salivary prote 48.1 3.3E+02 0.011 30.4 22.5 131 903-1035 123-306 (381)
369 3v42_A Folliculin; tumor suppr 47.0 14 0.00049 38.0 4.1 96 205-306 7-104 (226)
370 1suu_A DNA gyrase subunit A; t 46.7 3.1E+02 0.01 29.6 27.6 229 933-1170 7-277 (312)
371 3of7_A Regulator of chromosome 44.8 4E+02 0.014 30.4 33.1 230 884-1119 67-405 (473)
372 4gq2_M Nucleoporin NUP120; bet 43.6 85 0.0029 40.1 11.5 32 1146-1177 236-267 (950)
373 1wp5_A Topoisomerase IV; broke 43.6 3.5E+02 0.012 29.3 24.4 234 933-1174 4-275 (323)
374 4gq2_M Nucleoporin NUP120; bet 43.3 1.2E+02 0.0043 38.5 13.0 38 965-1002 236-273 (950)
375 2ab9_A Pro-SFTI-1; protein, be 41.3 11 0.00036 24.1 1.2 13 53-65 18-30 (31)
376 4fhn_B Nucleoporin NUP120; pro 41.2 5.9E+02 0.02 33.0 19.3 37 1048-1086 239-275 (1139)
377 3uc1_A DNA gyrase subunit A; D 41.0 3.8E+02 0.013 29.1 23.9 233 934-1174 3-277 (327)
378 1wp5_A Topoisomerase IV; broke 40.9 3.8E+02 0.013 29.0 24.9 227 891-1119 3-277 (323)
379 2y69_E Cytochrome C oxidase su 39.9 45 0.0015 31.2 5.7 50 624-677 89-139 (152)
380 1zi0_A DNA gyrase subunit A; b 38.3 4E+02 0.014 28.5 28.6 227 891-1119 1-277 (307)
381 2wg3_C Hedgehog-interacting pr 36.1 5.4E+02 0.019 29.4 15.9 103 965-1067 14-159 (463)
382 2wg3_C Hedgehog-interacting pr 35.4 2.6E+02 0.009 32.1 13.0 30 1047-1076 14-44 (463)
383 1zi0_A DNA gyrase subunit A; b 34.8 4.5E+02 0.015 28.1 27.8 231 934-1174 3-275 (307)
384 4fhn_B Nucleoporin NUP120; pro 31.5 1.8E+02 0.006 38.0 11.9 31 1147-1177 239-269 (1139)
385 3no0_A DNA gyrase subunit A; D 28.7 5.3E+02 0.018 27.0 24.5 184 933-1120 34-247 (276)
386 3l6v_A GYRA, DNA gyrase subuni 28.7 6.3E+02 0.021 27.9 28.1 141 933-1076 6-179 (370)
387 1a12_A RCC1, regulator of chro 26.5 6.9E+02 0.024 27.6 38.9 228 884-1119 59-365 (413)
388 3l6v_A GYRA, DNA gyrase subuni 25.2 7.2E+02 0.025 27.4 29.2 226 891-1119 5-316 (370)
389 4hvt_A Ritya.17583.B, post-pro 24.6 1E+03 0.034 28.9 25.1 227 848-1081 138-433 (711)
390 3f7f_A Nucleoporin NUP120; nuc 24.2 80 0.0027 38.5 6.0 37 885-921 223-259 (729)
391 3f7f_A Nucleoporin NUP120; nuc 20.2 1.1E+02 0.0039 37.1 6.2 37 1007-1043 222-258 (729)
No 1
>3tw8_A DENN domain-containing protein 1B; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=8.7e-68 Score=603.33 Aligned_cols=373 Identities=23% Similarity=0.400 Sum_probs=288.9
Q ss_pred CcceEEEEEeccCCCcccCCCCCCCCCCccccccccccccccCCCCCCCCCCCCCCcccCCCceEEeecCCCCCCCCCCC
Q 001042 2 ARVFEYFVVCGIGPEIRTLDGSKGYHGPEYYYLSSVLDQFPPLNHSLYTPPPPQLSTCVLPAGVQFYSSGFDSDDPSTFP 81 (1178)
Q Consensus 2 ~rl~dyfvvvG~~~~~~~~~~~~~~~~~~~~~~p~vl~~yP~~~~~~~~~~~~~v~~fc~P~g~~~~~~~~~~~~~~~~p 81 (1178)
.|+||+|++|+.+.. ..|.|+|+++||+ ++++. +.++.|+.||||.|+++... ++.+
T Consensus 11 ~~~f~~~~~v~~p~~--------------~~~~p~i~~~fP~-~~~d~-~~l~~ip~FCfP~~~~~~~~-------~~~~ 67 (391)
T 3tw8_A 11 DRTFDLVLKVKCHAS--------------ENEDPVVLWKFPE-DFGDQ-EILQSVPKFCFPFDVERVSQ-------NQVG 67 (391)
T ss_dssp SSSCSEEEEEEC-------------------CCCEEEEEEST-TCCCH-HHHHHHHHHHSCSCHHHHGG-------GCCS
T ss_pred hhhEEEEEEEeCCCC--------------CCCCCeeeEeCCC-Ccccc-hhhhccccccCCCccccCcc-------CCCC
Confidence 589999999995211 1278999999998 55543 46678999999999987432 2357
Q ss_pred ceeEEEEEcCCCCeEEEEEEEecCCCCHHHHHhccCCCCccCCeEEEEEcCCChHHHHHHHHHHHHHHhhccCCCCccHH
Q 001042 82 RTYPIVLTEGDGSKIYVSCISFRDPVSEDIAEAYRIPANSFADKCICLVSRSPSFRILRNALEEIYSLCFLSDGSSKPLW 161 (1178)
Q Consensus 82 ~~f~fvlT~~~g~~~Yg~cl~f~e~~~~~~~~~~~~~~~~~~~~~icllS~~p~~~~f~~~L~~i~~~~~~~~~~~~~~~ 161 (1178)
++|+|||||+||+|.||+|+.++ .++||||||||+|||++|+++|..||+++.. +...++|
T Consensus 68 ~~fsFVLTd~dG~r~yg~Cr~~~-----------------~~~k~icilS~lp~f~~F~k~L~~l~~~~~~--~~~~~le 128 (391)
T 3tw8_A 68 QHFTFVLTDIESKQRFGFCRLTS-----------------GGTICLCILSYLPWFEVYYKLLNTLADYLAK--ELENDLN 128 (391)
T ss_dssp EEEEEEEECTTSCEEEEEEEECT-----------------TSSEEEEEEESSCCHHHHHHHHHHHHHHHHT--TCHHHHH
T ss_pred ceEEEEEecCCCCEEEEEEEccC-----------------CCceEEEEEeCChHHHHHHHHHHHHHHHHhc--CCchHHH
Confidence 89999999999999999998652 3679999999999999999999999998764 3356788
Q ss_pred HHHHhhcccCCCCCCCCceEEeeeccceeEEeCCCCCCCCCCC--cchHHHhccCChhhHHHHHHHHhccccEEEEeCCc
Q 001042 162 DVISHLVSNVPLPTPGKNRVLFAIENCLLSVEAPPKEGLPHAD--ISFQPLVQLLDVDNLITLFTAVLLERRILLRSNKY 239 (1178)
Q Consensus 162 ~~i~~~l~~~p~P~~g~~~~~~~~~~~~~~~~~p~~~~lp~~~--~~~~~l~~~l~~~~~l~l~~~~L~E~~il~~s~~~ 239 (1178)
+++. .++++|+|.||++ +.+.+.. .+..|....||..+ .++..||++|+++|++.+|+++|+|+||||+|+++
T Consensus 129 ~~~~-~l~~~P~P~pG~~-v~l~~~~---~~~~P~~~~Lp~~~~~~~~~~Lf~~L~~~~il~l~~~~LlE~rIl~~S~~~ 203 (391)
T 3tw8_A 129 ETLR-SLYNHPVPKANTP-VNLSVHS---YFIAPDVTGLPTIPESRNLTEYFVAVDVNNMLQLYASMLHERRIVIISSKL 203 (391)
T ss_dssp HHHH-HHHHSCCCCSCC--------------------CCCCBTTSHHHHHHHHHSCHHHHHHHHHHHTTTCEEEEEESCH
T ss_pred HHHH-HHhhCCCCCCCCe-EEEeccc---eeeCCCCCCCCCCCCCCCHHHHHHhCCHHHHHHHHHHHHhcCCEEEEeCCH
Confidence 8876 5789999999987 4444422 34568777888764 46899999999999999999999999999999999
Q ss_pred chHHHHHHHHHHcccccCCCceeecccchhhhhhccCCcceEEeecCCCCc--cccCCCcEEEEEcCCCeeeCC-CCCCC
Q 001042 240 SLLTLVSEAICHLIYPFRWQHVYIPLLFFSGVDYIDAPTPYMMGLHSGVDT--SNLAMDGVVVVDLEYNRICTT-EEIPP 316 (1178)
Q Consensus 240 ~~ls~~~~al~~ll~Pf~w~~~~IP~lP~~l~~~l~aP~P~iiGv~~~~~~--~~~~~~~~~~vdlD~~~i~~~-~~~~~ 316 (1178)
++||.|++|+.+|||||+|+|+|||+||.+|+|+|+||+||||||+++... ...+.+|+++||||+|+|..+ ++++.
T Consensus 204 ~~Ls~~~~al~~Ll~Pf~w~~~~IPvLP~~l~d~l~aP~PfiiGv~~~~~~~~~~~~~~dvvvVDLD~~~i~~~~~d~~~ 283 (391)
T 3tw8_A 204 STLTACIHGSAALLYPMYWQHIYIPVLPPHLLDYCCAPMPYLIGIHSSLIERVKNKSLEDVVMLNVDTNTLESPFSDLNN 283 (391)
T ss_dssp HHHHHHHHHHHHTTTTSCCCSEEESSCCGGGGGGGGCSSCEEEEEETTTHHHHHTSCCCSCEEEETTTTEEECSCCTGGG
T ss_pred HHHHHHHHHHHHHhcCcccCcceEeecCHHHHhHhcCCCCEEEEecchhHHHhhccCCCCEEEEEcCCCeEeCCCccccc
Confidence 999999999999999999999999999999999999999999999998632 233678999999999999988 67899
Q ss_pred CCchhhhhhHHHHHHhcCCCcccccccCCCCCCcccccccCCCCchhhhHHHHHHHHHHHHHHHhhHHhccccC--CccC
Q 001042 317 IPEPELSSLRGDILKLLYPNVVGIDRMNAGGSSEHYSKVCSKPWGEEHDLQLRFIFLKFLASILGGYRNFIENT--GTQV 394 (1178)
Q Consensus 317 lP~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~Fl~~~~~ll~~y~~~l~~~--~~~~ 394 (1178)
||++..+.|+++|++.. ...+..|++||++||++++++||+|++.. +...
T Consensus 284 LP~~~~~~L~~~L~~~~----------------------------~~~~~~v~~aFlrf~~~llg~Yr~~l~~~~~~~~~ 335 (391)
T 3tw8_A 284 LPSDVVSALKNKLKKQS----------------------------TATGDGVARAFLRAQAALFGSYRDALRYKPGEPIT 335 (391)
T ss_dssp SCHHHHHHHHHHHTSGG----------------------------GGSBTHHHHHHHHHHHHHHGGGCC---------CC
T ss_pred CCHHHHHHHHHHHhhcc----------------------------CchhhHHHHHHHHHHHHHHhHHHHhhccCCCCceE
Confidence 99998888888875321 01234699999999999999999999754 4678
Q ss_pred cChHHHhcccccCCCCCCchHHHHHHHHhhHHHHHHcccCCCCCchhHHHHHHHHhccC
Q 001042 395 FNAQAFLKKRSRSTNQPPDPMITQFLDSQGFLDYLERGLGSDENNSNLLDKLQDAIGRG 453 (1178)
Q Consensus 395 F~~~~Fl~~~~~~~~~~~~~F~~~f~~tq~F~~Fie~~~~~~~~~~~~~~~~~~~~~~~ 453 (1178)
||+++|+++|+++ .++|+++|++||||..|||+|+...+.+....|.+++|+..+
T Consensus 336 F~~~~Fl~~r~~~----~~~Fl~~~~~TQmF~~FI~eRl~~ln~~~~~~d~fe~ei~~~ 390 (391)
T 3tw8_A 336 FCEESFVKHRSSV----MKQFLETAINLQLFKQFIDGRLAKLNAGRGFSDVFEEEITSG 390 (391)
T ss_dssp CCHHHHSCCSSHH----HHHHHHHHTTCHHHHHHHHHHHHHTC----------------
T ss_pred ecHHHHhhccChh----hhHHHHHHHHhhHHHHHHHHHHHhhcCCCCCCcHHHHHhhcC
Confidence 9999999998876 679999999999999999999988877777888787777654
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.2e-45 Score=462.10 Aligned_cols=386 Identities=16% Similarity=0.255 Sum_probs=322.5
Q ss_pred ccc-cCCCCC----CCC-------CCC-CCCcccccCCcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCC
Q 001042 744 NGM-PSPLSK----DAT-------NDD-QQPAEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQD 808 (1178)
Q Consensus 744 ~~~-fSP~g~----~~~-------~~~-~~~~~~~gh~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~ 808 (1178)
.++ |||||+ -.. -.+ .....+.||...|.+++|||||+++|+|+.| |+|||+.+++.
T Consensus 22 ~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~-------- 93 (611)
T 1nr0_A 22 VVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH-------- 93 (611)
T ss_dssp CCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC--------
T ss_pred eEEeeCCCCCEEEeCCCCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcc--------
Confidence 367 999997 010 123 3344567999999999999999999999998 99999875441
Q ss_pred CCcCCcccccceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCC----CcEEEEcCCCCCceeeEeeccccc
Q 001042 809 STAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTD----CLVKIWDPSLRGSELRATLKGHTR 884 (1178)
Q Consensus 809 ~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~D----g~I~iWd~~~~~~~~~~~l~~h~~ 884 (1178)
.....+.+|.++|.+++|+ ||++.|++++.+ ++|++||.. .....+.+|..
T Consensus 94 ---------~~~~~~~~~~~~v~~v~fs------------~dg~~l~~~~~~~~~~~~v~~wd~~----~~~~~l~gh~~ 148 (611)
T 1nr0_A 94 ---------ILKTTIPVFSGPVKDISWD------------SESKRIAAVGEGRERFGHVFLFDTG----TSNGNLTGQAR 148 (611)
T ss_dssp ---------CEEEEEECSSSCEEEEEEC------------TTSCEEEEEECCSSCSEEEEETTTC----CBCBCCCCCSS
T ss_pred ---------eeeEeecccCCceEEEEEC------------CCCCEEEEEECCCCceeEEEEeeCC----CCcceecCCCC
Confidence 1456788999999999998 899999999875 478999843 23467889999
Q ss_pred ceEE--EecCCC-EEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEe
Q 001042 885 TVRA--INSDRG-KVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATV 960 (1178)
Q Consensus 885 ~V~~--~s~d~~-~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~ 960 (1178)
.|.+ |+|++. .+++|+.|++|++||..+++....+.+|...|.+++|+ ++..+++|+.||+|++||+.+++.+..+
T Consensus 149 ~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~ 228 (611)
T 1nr0_A 149 AMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVF 228 (611)
T ss_dssp CEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEC
T ss_pred CceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeee
Confidence 9986 588886 69999999999999999999999999999999999999 7889999999999999999999998887
Q ss_pred c-------CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEE--------------------------------
Q 001042 961 G-------RCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHK-------------------------------- 1001 (1178)
Q Consensus 961 ~-------~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~-------------------------------- 1001 (1178)
. +|...|.+++|+|++++|++++.|++|++||+++++.+..
T Consensus 229 ~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~ 308 (611)
T 1nr0_A 229 EDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINF 308 (611)
T ss_dssp BCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEE
T ss_pred ccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEE
Confidence 4 6899999999999999999999999999999998765443
Q ss_pred -----------EecCCccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCeeeeEe-c------------------------
Q 001042 1002 -----------FLGHTKWIRSIRMD--RDTVITGSDDWTARMWSISRGTCDAVL-A------------------------ 1043 (1178)
Q Consensus 1002 -----------~~~~~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~-~------------------------ 1043 (1178)
+.+|...|.+++|+ ++++++++.||+|++||+.+++....+ .
T Consensus 309 ~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~ 388 (611)
T 1nr0_A 309 VNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDD 388 (611)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTT
T ss_pred EeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCC
Confidence 34688899999995 559999999999999998876442221 0
Q ss_pred ---------------------------------------------------------cCCCcEEEEEEecCCCEEEEEeC
Q 001042 1044 ---------------------------------------------------------CHAGPVQCVEYSSSDRGIITGSS 1066 (1178)
Q Consensus 1044 ---------------------------------------------------------~h~~~I~~l~~spdg~~L~sgs~ 1066 (1178)
.|...+.+++|+|+|++|++|+.
T Consensus 389 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~ 468 (611)
T 1nr0_A 389 HLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQ 468 (611)
T ss_dssp EEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEET
T ss_pred ceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCC
Confidence 12345788999999999999999
Q ss_pred CCcEEEEECCCCceEEEEEecccCCcEEEE--ecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeec--cC
Q 001042 1067 DGLLRFWENDDGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRT--PQ 1142 (1178)
Q Consensus 1067 Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~--~~ 1142 (1178)
|++|++||+.++....... .+|...|.++ +|+|++|++++.|++|++|++.+. + ++... ..
T Consensus 469 D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~--------~------~~~~~~~~~ 533 (611)
T 1nr0_A 469 DSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANN--------F------ELAHTNSWT 533 (611)
T ss_dssp TSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGT--------T------EESCCCCCC
T ss_pred CCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCC--------C------ceeeeeeee
Confidence 9999999998875444444 6798888766 899999999999999999998741 1 22222 34
Q ss_pred CCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001042 1143 KTVAVVRCIASDLERKRICSGGRNGLLRLWEATIN 1177 (1178)
Q Consensus 1143 ~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~tg 1177 (1178)
+|...|++++|+|||++||||+.||+|++||++++
T Consensus 534 ~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~ 568 (611)
T 1nr0_A 534 FHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKP 568 (611)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCT
T ss_pred ecccceeEEEECCCCCEEEEEECCCcEEEEECCCc
Confidence 59999999999999999999999999999999865
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.9e-44 Score=451.07 Aligned_cols=389 Identities=17% Similarity=0.231 Sum_probs=316.7
Q ss_pred ccccccCcc-cc-cCCCCC-----CCCC-------CCCC---CcccccCCcceEEEEecCCCCcccccccc------eee
Q 001042 736 IKGQSSLSN-GM-PSPLSK-----DATN-------DDQQ---PAEASGIGRSWVQSMFSREASSRSHSFSR------VRK 792 (1178)
Q Consensus 736 ~~~~~~~~~-~~-fSP~g~-----~~~~-------~~~~---~~~~~gh~~~i~~~aFSpdg~~las~~~d------I~v 792 (1178)
.+...-+.| ++ |||||+ ..++ .+++ .....+|...|.+++|||||+.+|+++.+ |++
T Consensus 54 ~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~ 133 (611)
T 1nr0_A 54 IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFL 133 (611)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEE
T ss_pred EecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEE
Confidence 344444556 77 999998 1111 1212 23457899999999999999999988753 777
Q ss_pred cccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceeccccccCCCC-EEEEEeCCCcEEEEcCCCC
Q 001042 793 WTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAG-FFISGSTDCLVKIWDPSLR 871 (1178)
Q Consensus 793 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~-~Lasgs~Dg~I~iWd~~~~ 871 (1178)
|| ++. .+..+.+|.+.|++++|+ |++. .|++|+.|++|++||..
T Consensus 134 wd--~~~-------------------~~~~l~gh~~~v~~v~f~------------p~~~~~l~s~s~D~~v~lwd~~-- 178 (611)
T 1nr0_A 134 FD--TGT-------------------SNGNLTGQARAMNSVDFK------------PSRPFRIISGSDDNTVAIFEGP-- 178 (611)
T ss_dssp TT--TCC-------------------BCBCCCCCSSCEEEEEEC------------SSSSCEEEEEETTSCEEEEETT--
T ss_pred ee--CCC-------------------CcceecCCCCCceEEEEC------------CCCCeEEEEEeCCCeEEEEECC--
Confidence 77 333 455688999999999998 7776 69999999999999965
Q ss_pred CceeeEeecccccceEE--EecCCCEEEEEeCCCcEEEEECCCCcEEEEec-------CCCCceEEEEEe-CCCeEEEEe
Q 001042 872 GSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLLEELK-------GHDAQVSCVRML-SGERVLTAS 941 (1178)
Q Consensus 872 ~~~~~~~l~~h~~~V~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~-------~h~~~V~~l~~~-~~~~l~sgs 941 (1178)
..+....+.+|...|.+ |+|++++|++|+.|++|++||+.+++.+..+. +|.+.|.+++|+ ++.++++++
T Consensus 179 ~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s 258 (611)
T 1nr0_A 179 PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS 258 (611)
T ss_dssp TBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEE
T ss_pred CCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEe
Confidence 55677889999999985 58999999999999999999999999988884 799999999999 788999999
Q ss_pred CCCeEEEEeCCCCeEEEE-------------------------------------------ecCCCCCEEEEEEeCCCCE
Q 001042 942 HDGTVKMWDVRTDTCVAT-------------------------------------------VGRCSSAVLCMEYDDSTGI 978 (1178)
Q Consensus 942 ~dg~V~iwd~~~~~~~~~-------------------------------------------~~~~~~~I~~l~~sp~~~~ 978 (1178)
.|++|++||+.+++++.. +.+|...|.+++|+|+|++
T Consensus 259 ~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~ 338 (611)
T 1nr0_A 259 ADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKT 338 (611)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred CCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCE
Confidence 999999999998766543 3468889999999999999
Q ss_pred EEEEeCCCeEEEEECCCCceEEEE-ec-----------------------------------------------------
Q 001042 979 LAAGGRDAVANIWDIRAGRQMHKF-LG----------------------------------------------------- 1004 (1178)
Q Consensus 979 l~sgs~dg~I~lwD~~~~~~~~~~-~~----------------------------------------------------- 1004 (1178)
|++++.||.|++||+.+++....+ .+
T Consensus 339 l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (611)
T 1nr0_A 339 LFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLA 418 (611)
T ss_dssp EEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEE
T ss_pred EEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEE
Confidence 999999999999999876543221 00
Q ss_pred ----------------------------CCccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCee--eeEeccCCCcEEEE
Q 001042 1005 ----------------------------HTKWIRSIRMD--RDTVITGSDDWTARMWSISRGTC--DAVLACHAGPVQCV 1052 (1178)
Q Consensus 1005 ----------------------------~~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~--~~~~~~h~~~I~~l 1052 (1178)
|...+.+++++ ++++++|+.|++|++||+.++.. ... .+|...|+++
T Consensus 419 ~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v 497 (611)
T 1nr0_A 419 VSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSV 497 (611)
T ss_dssp ECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEE
T ss_pred EeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEE
Confidence 12345677774 55999999999999999987653 233 6799999999
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCceEEEE--EecccCCcEEEE--ecCCCEEEEEeCCCcEEEEEcCCCccccccCC
Q 001042 1053 EYSSSDRGIITGSSDGLLRFWENDDGGIKCVK--NVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGT 1128 (1178)
Q Consensus 1053 ~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~--~~~~h~~~i~~i--s~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~ 1128 (1178)
+|+|+|++|++++.|++|++||+.++. .... ...+|...|.++ +|+|++||+|+.|++|++||+..+.
T Consensus 498 ~fspdg~~las~s~d~~v~~w~~~~~~-~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~------- 569 (611)
T 1nr0_A 498 AFSNNGAFLVATDQSRKVIPYSVANNF-ELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS------- 569 (611)
T ss_dssp EECTTSSEEEEEETTSCEEEEEGGGTT-EESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTT-------
T ss_pred EECCCCCEEEEEcCCCCEEEEEcCCCC-ceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcc-------
Confidence 999999999999999999999998721 2222 234599998776 7999999999999999999997431
Q ss_pred CCCccceeEeeccCCC-cccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001042 1129 GSKMSGWQLYRTPQKT-VAVVRCIASDLERKRICSGGRNGLLRLWEAT 1175 (1178)
Q Consensus 1129 g~~~~~~~~~~~~~~h-~~~V~~lafspdg~~Las~s~Dg~V~IWdv~ 1175 (1178)
. .....+.+| ...|++++|+||++ |++|+.||+|++|++.
T Consensus 570 --~----~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 570 --D----HPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp --S----CCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred --c----ccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 1 112456688 89999999999998 9999999999999984
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.7e-42 Score=429.88 Aligned_cols=354 Identities=25% Similarity=0.468 Sum_probs=318.6
Q ss_pred cccccCCcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeecc
Q 001042 762 AEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKR 839 (1178)
Q Consensus 762 ~~~~gh~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~ 839 (1178)
....+|...+.+++|+|||+++++++.+ |++||.+. + .+..+.+|...|++++|+
T Consensus 215 ~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~-~-------------------~~~~~~~~~~~v~~v~~~--- 271 (577)
T 2ymu_A 215 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-Q-------------------LLQTLTGHSSSVNGVAFR--- 271 (577)
T ss_dssp EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS-C-------------------EEEEECCCSSCEEEEEEC---
T ss_pred EEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC-C-------------------EEEEEecCCCCEEEEEEc---
Confidence 3457889999999999999999999988 99999642 2 577899999999999998
Q ss_pred ceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEE--EecCCCEEEEEeCCCcEEEEECCCCcEEE
Q 001042 840 EVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLLE 917 (1178)
Q Consensus 840 ~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~ 917 (1178)
|+++.+++++.|++|++||.+ .+....+.+|...|.+ ++|+++.+++++.||.|++||.. ++.+.
T Consensus 272 ---------~d~~~l~~~~~d~~i~~w~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~ 338 (577)
T 2ymu_A 272 ---------PDGQTIASASDDKTVKLWNRN---GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQ 338 (577)
T ss_dssp ---------TTSSEEEEEETTSCEEEEETT---SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEE
T ss_pred ---------CCCCEEEEEeCCCEEEEEeCC---CcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeE
Confidence 899999999999999999954 4556788999999985 58999999999999999999976 45567
Q ss_pred EecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Q 001042 918 ELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAG 996 (1178)
Q Consensus 918 ~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~ 996 (1178)
.+.+|...+.+++|+ ++..+++|+.||.|++||. +++.+..+..|...|.+++|+|+++++++++.|+.|++||. ++
T Consensus 339 ~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~ 416 (577)
T 2ymu_A 339 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NG 416 (577)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TC
T ss_pred EEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CC
Confidence 888999999999999 7889999999999999995 67788888899999999999999999999999999999995 67
Q ss_pred ceEEEEecCCccEEEEEEcC--CEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEE
Q 001042 997 RQMHKFLGHTKWIRSIRMDR--DTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWE 1074 (1178)
Q Consensus 997 ~~~~~~~~~~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd 1074 (1178)
+.+..+.+|...|++++|++ .++++++.|+.|++||. +++.+..+.+|...|++++|+|++++|++++.|+.|++||
T Consensus 417 ~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~ 495 (577)
T 2ymu_A 417 QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 495 (577)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred CEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEc
Confidence 88889999999999999954 59999999999999995 6778888999999999999999999999999999999999
Q ss_pred CCCCceEEEEEecccCCcEEEE--ecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEE
Q 001042 1075 NDDGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIA 1152 (1178)
Q Consensus 1075 ~~~~~~~~~~~~~~h~~~i~~i--s~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~la 1152 (1178)
.. + .++..+.+|...|.++ +|+|++||+|+.||.|++||.. | +++..+.+|.+.|++++
T Consensus 496 ~~-~--~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~----------~------~~~~~~~~h~~~v~~~~ 556 (577)
T 2ymu_A 496 RN-G--QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN----------G------QLLQTLTGHSSSVWGVA 556 (577)
T ss_dssp TT-S--CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT----------S------CEEEEEECCSSCEEEEE
T ss_pred CC-C--CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC----------C------CEEEEEcCCCCCEEEEE
Confidence 64 4 5677888999999776 7999999999999999999963 2 45666789999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEE
Q 001042 1153 SDLERKRICSGGRNGLLRLWE 1173 (1178)
Q Consensus 1153 fspdg~~Las~s~Dg~V~IWd 1173 (1178)
|+|||++|+|++.||+|++||
T Consensus 557 fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 557 FSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp ECTTSSCEEEEETTSCEEEEC
T ss_pred EcCCCCEEEEEeCCCEEEEeC
Confidence 999999999999999999997
No 5
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4.8e-41 Score=416.72 Aligned_cols=358 Identities=24% Similarity=0.452 Sum_probs=314.4
Q ss_pred CcccccCCcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeec
Q 001042 761 PAEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTK 838 (1178)
Q Consensus 761 ~~~~~gh~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~ 838 (1178)
..++.||...|.+++|||||+++|+|+.| |+|||. +++ .++++.||.+.|++++|+
T Consensus 9 ~~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~-------------------~~~~l~gh~~~V~~l~fs-- 66 (577)
T 2ymu_A 9 RNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQ-------------------LLQTLTGHSSSVWGVAFS-- 66 (577)
T ss_dssp EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSC-------------------EEEEEECCSSCEEEEEEC--
T ss_pred eeEECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCC-------------------EEEEEeCCCCCEEEEEEC--
Confidence 34578999999999999999999999998 999995 344 688999999999999998
Q ss_pred cceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEE--EecCCCEEEEEeCCCcEEEEECCCCc--
Q 001042 839 REVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQ-- 914 (1178)
Q Consensus 839 ~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~--~s~d~~~l~sgs~dg~I~iwd~~t~~-- 914 (1178)
||+++||+|+.||+|+|||.. .+....+.+|...|.+ ++|+++++++++.|+.+++|+.....
T Consensus 67 ----------pdg~~las~~~d~~i~vWd~~---~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~ 133 (577)
T 2ymu_A 67 ----------PDGQTIASASDDKTVKLWNRN---GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ 133 (577)
T ss_dssp ----------TTSSEEEEEETTSCEEEEETT---SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEE
T ss_pred ----------CCCCEEEEEeCCCEEEEEECC---CCEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceee
Confidence 899999999999999999954 4566889999999985 58999999999999999999865321
Q ss_pred --------------------------------------EEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCe
Q 001042 915 --------------------------------------LLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDT 955 (1178)
Q Consensus 915 --------------------------------------~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~ 955 (1178)
.......|...|.++.++ ++..+++++.||.|++||. +++
T Consensus 134 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~-~~~ 212 (577)
T 2ymu_A 134 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQ 212 (577)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSC
T ss_pred eccCCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeC-CCc
Confidence 112234566778888888 6788999999999999995 677
Q ss_pred EEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEEc
Q 001042 956 CVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMD--RDTVITGSDDWTARMWSI 1033 (1178)
Q Consensus 956 ~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sgs~dg~I~iwd~ 1033 (1178)
.+..+..|...|.+++|+|+++.+++++.||.|++||. +++.+..+.+|...|.++++. +..+++++.|+.|++||.
T Consensus 213 ~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~ 291 (577)
T 2ymu_A 213 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR 291 (577)
T ss_dssp EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC
Confidence 88888899999999999999999999999999999995 567888899999999999995 459999999999999995
Q ss_pred CCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE--ecCCCEEEEEeCCCc
Q 001042 1034 SRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNS 1111 (1178)
Q Consensus 1034 ~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~dg~~Lasgs~Dg~ 1111 (1178)
+++....+.+|...|++++|+|+++.+++++.||.|++||.... ....+.+|...+.++ +|+++++++|+.||.
T Consensus 292 -~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~---~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~ 367 (577)
T 2ymu_A 292 -NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ---HLQTLTGHSSSVWGVAFSPDGQTIASASDDKT 367 (577)
T ss_dssp -TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC---EEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred -CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC---eeEEEeCCCCCEEEEEECCCCCEEEEEeCCCE
Confidence 56778889999999999999999999999999999999998764 456677898888766 799999999999999
Q ss_pred EEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001042 1112 MSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEAT 1175 (1178)
Q Consensus 1112 I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~ 1175 (1178)
|++||.. + ++...+.+|...|++++|+|||++|++++.||.|++||.+
T Consensus 368 v~~~~~~----------~------~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~ 415 (577)
T 2ymu_A 368 VKLWNRN----------G------QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 415 (577)
T ss_dssp EEEEETT----------C------CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred EEEEcCC----------C------CEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence 9999964 2 4555667899999999999999999999999999999965
No 6
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3.2e-40 Score=411.89 Aligned_cols=387 Identities=15% Similarity=0.218 Sum_probs=308.9
Q ss_pred CCcccccCCcc-eEEEEecC--CCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEE
Q 001042 760 QPAEASGIGRS-WVQSMFSR--EASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALH 834 (1178)
Q Consensus 760 ~~~~~~gh~~~-i~~~aFSp--dg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~ 834 (1178)
....+.+|... |.+++||| ||+++|+++.| |++||+.++..... .....+..+.+|.++|.+++
T Consensus 55 ~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~-----------~~~~~~~~~~~~~~~v~~~~ 123 (615)
T 1pgu_A 55 PVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNS-----------VEVNVKSEFQVLAGPISDIS 123 (615)
T ss_dssp SEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTE-----------EEEEEEEEEECCSSCEEEEE
T ss_pred cceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCccccc-----------ccccccchhhcccccEEEEE
Confidence 45566789999 99999999 99999999988 99999975510000 00013334444444555554
Q ss_pred eeeccce--------------------------------eccccccCCCC-EEEEEeCCCcEEEEcCCCCCceeeEeecc
Q 001042 835 CVTKREV--------------------------------WDLVGDREDAG-FFISGSTDCLVKIWDPSLRGSELRATLKG 881 (1178)
Q Consensus 835 fs~~~~~--------------------------------~~~~~~s~d~~-~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~ 881 (1178)
|+|.... ...+.|+|+++ .+++|+.||.|++||+. ..+....+.+
T Consensus 124 ~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~--~~~~~~~~~~ 201 (615)
T 1pgu_A 124 WDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGP--PFKFSASDRT 201 (615)
T ss_dssp ECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETT--TBEEEEEECS
T ss_pred EeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCC--Ccceeeeecc
Confidence 4443211 11223347887 89999999999999976 5677788899
Q ss_pred ccc---ceEE--EecC-CCEEEEEeCCCcEEEEECCCCcEEEEe-c---CCCCceEEEEEeCCCeEEEEeCCCeEEEEeC
Q 001042 882 HTR---TVRA--INSD-RGKVVSGSDDQSVLVWDKQTSQLLEEL-K---GHDAQVSCVRMLSGERVLTASHDGTVKMWDV 951 (1178)
Q Consensus 882 h~~---~V~~--~s~d-~~~l~sgs~dg~I~iwd~~t~~~~~~l-~---~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~ 951 (1178)
|.. .|.+ ++|+ ++++++++.||.|++||+.+++.+..+ . .|...|.+++|+++..+++++.||.|++||+
T Consensus 202 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~ 281 (615)
T 1pgu_A 202 HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDV 281 (615)
T ss_dssp SSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEET
T ss_pred cCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEEC
Confidence 998 8875 5899 999999999999999999999999999 6 8999999999997789999999999999999
Q ss_pred CCCeEEEEecCC----CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEE-------------
Q 001042 952 RTDTCVATVGRC----SSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM------------- 1014 (1178)
Q Consensus 952 ~~~~~~~~~~~~----~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~------------- 1014 (1178)
++++.+..+..+ ...+.++.++ +++.+++++.||.|++||+.+++.+..+.+|...|.++++
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~ 360 (615)
T 1pgu_A 282 TTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIM 360 (615)
T ss_dssp TTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEE
T ss_pred CCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEE
Confidence 999998888765 3678888886 8899999999999999999988777777666555444433
Q ss_pred --------------------------------------------------------------------------------
Q 001042 1015 -------------------------------------------------------------------------------- 1014 (1178)
Q Consensus 1015 -------------------------------------------------------------------------------- 1014 (1178)
T Consensus 361 ~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (615)
T 1pgu_A 361 EWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDII 440 (615)
T ss_dssp ETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEE
T ss_pred EEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCcee
Confidence
Q ss_pred --------------cCCEEEEEeC-CCcEEEEEcCCCeee-eEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 001042 1015 --------------DRDTVITGSD-DWTARMWSISRGTCD-AVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDG 1078 (1178)
Q Consensus 1015 --------------~~~~l~sgs~-dg~I~iwd~~~~~~~-~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~ 1078 (1178)
+++++++++. ||.|++||+.+++.. ..+.+|...|++++|+|++++|++|+.||.|++||+.++
T Consensus 441 ~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 520 (615)
T 1pgu_A 441 KSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR 520 (615)
T ss_dssp EEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred eecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCC
Confidence 2334555555 666666666655444 556678999999999999999999999999999999998
Q ss_pred ceEEEEEecc-cCCcEEEE--ec----------CCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCc
Q 001042 1079 GIKCVKNVTI-HSSAILSI--NA----------GDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTV 1145 (1178)
Q Consensus 1079 ~~~~~~~~~~-h~~~i~~i--s~----------dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~ 1145 (1178)
..+..+.+ |...|.++ +| ++++|++|+.||.|++||+.++. +....+.+|.
T Consensus 521 --~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--------------~~~~~~~~h~ 584 (615)
T 1pgu_A 521 --EVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM--------------KIIKALNAHK 584 (615)
T ss_dssp --EEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT--------------CCEEETTSST
T ss_pred --cceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCc--------------eechhhhcCc
Confidence 66777777 99999777 78 99999999999999999997431 3455678999
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001042 1146 AVVRCIASDLERKRICSGGRNGLLRLWEATIN 1177 (1178)
Q Consensus 1146 ~~V~~lafspdg~~Las~s~Dg~V~IWdv~tg 1177 (1178)
..|++++|+||++ |++++.||+|++|+++++
T Consensus 585 ~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~~ 615 (615)
T 1pgu_A 585 DGVNNLLWETPST-LVSSGADACIKRWNVVLE 615 (615)
T ss_dssp TCEEEEEEEETTE-EEEEETTSCEEEEEEC--
T ss_pred cceEEEEEcCCCC-eEEecCCceEEEEeeecC
Confidence 9999999999999 999999999999999864
No 7
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.6e-39 Score=440.55 Aligned_cols=383 Identities=19% Similarity=0.362 Sum_probs=321.6
Q ss_pred CCCcccccCCcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEee
Q 001042 759 QQPAEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCV 836 (1178)
Q Consensus 759 ~~~~~~~gh~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs 836 (1178)
.......+|...|.+++|||||+++|+|+.| |++||+.+++ .+..+.+|.+.|++++|+
T Consensus 606 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~-------------------~~~~~~~h~~~v~~~~~s 666 (1249)
T 3sfz_A 606 LSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGE-------------------KLLDIKAHEDEVLCCAFS 666 (1249)
T ss_dssp CCSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-------------------EEEEECCCSSCEEEEEEC
T ss_pred cceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCC-------------------EEEEeccCCCCEEEEEEe
Confidence 3445567999999999999999999999988 9999999887 788899999999999998
Q ss_pred eccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEE--ec--CCCEEEEEeCCCcEEEEECCC
Q 001042 837 TKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NS--DRGKVVSGSDDQSVLVWDKQT 912 (1178)
Q Consensus 837 ~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~--s~--d~~~l~sgs~dg~I~iwd~~t 912 (1178)
|+++++|+|+.||+|++||+. .......+.+|...|.++ ++ ++..+++|+.||.|++||+.+
T Consensus 667 ------------~~~~~l~s~~~d~~v~vwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~ 732 (1249)
T 3sfz_A 667 ------------SDDSYIATCSADKKVKIWDSA--TGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ 732 (1249)
T ss_dssp ------------TTSSEEEEEETTSEEEEEETT--TCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTS
T ss_pred ------------cCCCEEEEEeCCCeEEEEECC--CCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCC
Confidence 899999999999999999976 556778899999999865 56 556899999999999999999
Q ss_pred CcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEec------------------------------
Q 001042 913 SQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVG------------------------------ 961 (1178)
Q Consensus 913 ~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~------------------------------ 961 (1178)
++.+..+.+|...|++++|+ ++..+++|+.||+|++||+.+++....+.
T Consensus 733 ~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 812 (1249)
T 3sfz_A 733 KECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDK 812 (1249)
T ss_dssp SSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSE
T ss_pred cchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCE
Confidence 99999999999999999999 78899999999999999998776544321
Q ss_pred -------------------------CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEc-
Q 001042 962 -------------------------RCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMD- 1015 (1178)
Q Consensus 962 -------------------------~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~- 1015 (1178)
+|...+.+++|+|+++.+++|+.||.|++||+.++..+..+.+|...|.+++|+
T Consensus 813 l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp 892 (1249)
T 3sfz_A 813 IIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSP 892 (1249)
T ss_dssp EEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred EEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECC
Confidence 566788999999999999999999999999999999999999999999999995
Q ss_pred -CCEEEEEeCCCcEEEEEcC------------------------------------------------------------
Q 001042 1016 -RDTVITGSDDWTARMWSIS------------------------------------------------------------ 1034 (1178)
Q Consensus 1016 -~~~l~sgs~dg~I~iwd~~------------------------------------------------------------ 1034 (1178)
++.+++++.||.|++||+.
T Consensus 893 dg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~ 972 (1249)
T 3sfz_A 893 DGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPH 972 (1249)
T ss_dssp TSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTT
T ss_pred CCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCC
Confidence 4488888888888888743
Q ss_pred -------------------CCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEE
Q 001042 1035 -------------------RGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILS 1095 (1178)
Q Consensus 1035 -------------------~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~ 1095 (1178)
+++....+.+|.+.|++++|+|+|+++++++.||.|++||+.++. .. ....|...+.+
T Consensus 973 g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~--~~-~~~~~~~~v~~ 1049 (1249)
T 3sfz_A 973 LEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD--YV-FLQAHQETVKD 1049 (1249)
T ss_dssp SSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTE--EE-CCBCCSSCEEE
T ss_pred CCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCc--eE-EEecCCCcEEE
Confidence 233344556788999999999999999999999999999999873 32 34577777776
Q ss_pred E--ecCCCEEEEEeCCCcEEEEEcCCCccc-------------cccCCCC---------Cccce-----eEeeccCCCcc
Q 001042 1096 I--NAGDHWLGIGAADNSMSLFHRPQERLG-------------GFSGTGS---------KMSGW-----QLYRTPQKTVA 1146 (1178)
Q Consensus 1096 i--s~dg~~Lasgs~Dg~I~iwd~~~~~~~-------------~~~~~g~---------~~~~~-----~~~~~~~~h~~ 1146 (1178)
+ ++ +..+++++.||+|++||+.+++.. .+.++|. .+..| +....+.+|..
T Consensus 1050 ~~~~~-~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~ 1128 (1249)
T 3sfz_A 1050 FRLLQ-DSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNG 1128 (1249)
T ss_dssp EEECS-SSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSS
T ss_pred EEEcC-CCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCC
Confidence 6 44 445677888888888888765431 1122221 12223 34456778999
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 001042 1147 VVRCIASDLERKRICSGGRNGLLRLWEATINI 1178 (1178)
Q Consensus 1147 ~V~~lafspdg~~Las~s~Dg~V~IWdv~tg~ 1178 (1178)
.|++++|+|||++||+|+.||+|++||+.+|.
T Consensus 1129 ~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~ 1160 (1249)
T 3sfz_A 1129 CVRCSAFSLDGILLATGDDNGEIRIWNVSDGQ 1160 (1249)
T ss_dssp CEEEEEECSSSSEEEEEETTSCCCEEESSSSC
T ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEECCCCc
Confidence 99999999999999999999999999998863
No 8
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.4e-38 Score=396.98 Aligned_cols=368 Identities=12% Similarity=0.207 Sum_probs=302.0
Q ss_pred ccCCcceEEEEecCCCCcccccccc-eeecccccccCCCCCCCCCCCcCCcccccceEEecccccc-eEEEEeeecccee
Q 001042 765 SGIGRSWVQSMFSREASSRSHSFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGA-ITALHCVTKREVW 842 (1178)
Q Consensus 765 ~gh~~~i~~~aFSpdg~~las~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~-V~~l~fs~~~~~~ 842 (1178)
..|...+.+++|||||+++|+++++ |++||++++... ......+.+|.+. |++++|+
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~---------------~~~~~~~~~h~~~~v~~~~~s------ 73 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSK---------------VPPVVQFTGHGSSVVTTVKFS------ 73 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCS---------------SCSEEEECTTTTSCEEEEEEC------
T ss_pred CCccCceeEEEECCCCCEEEEecCCeEEEEECCCCCCc---------------cccceEEecCCCceEEEEEEC------
Confidence 4677889999999999999999877 999999976210 0168889999999 9999998
Q ss_pred ccccccC--CCCEEEEEeCCCcEEEEcCCCC------CceeeEeecccccce----------------------------
Q 001042 843 DLVGDRE--DAGFFISGSTDCLVKIWDPSLR------GSELRATLKGHTRTV---------------------------- 886 (1178)
Q Consensus 843 ~~~~~s~--d~~~Lasgs~Dg~I~iWd~~~~------~~~~~~~l~~h~~~V---------------------------- 886 (1178)
| ++++||+|+.||+|++||+... .......+.+|...|
T Consensus 74 ------p~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~ 147 (615)
T 1pgu_A 74 ------PIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISW 147 (615)
T ss_dssp ------SSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEET
T ss_pred ------cCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEE
Confidence 8 9999999999999999998522 223344444444444
Q ss_pred ----------------EE--EecCCC-EEEEEeCCCcEEEEECCCCcEEEEecCCCC---ceEEEEEe-C-CCeEEEEeC
Q 001042 887 ----------------RA--INSDRG-KVVSGSDDQSVLVWDKQTSQLLEELKGHDA---QVSCVRML-S-GERVLTASH 942 (1178)
Q Consensus 887 ----------------~~--~s~d~~-~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~---~V~~l~~~-~-~~~l~sgs~ 942 (1178)
.+ ++++++ .+++++.||.|++||+.+++.+..+.+|.. .|.+++|+ + ++.+++++.
T Consensus 148 d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 227 (615)
T 1pgu_A 148 DSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS 227 (615)
T ss_dssp TTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET
T ss_pred ECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC
Confidence 32 245554 688888899999999999999999999999 99999999 6 788999999
Q ss_pred CCeEEEEeCCCCeEEEEe-c---CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecC----CccEEEEEE
Q 001042 943 DGTVKMWDVRTDTCVATV-G---RCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGH----TKWIRSIRM 1014 (1178)
Q Consensus 943 dg~V~iwd~~~~~~~~~~-~---~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~----~~~v~~l~~ 1014 (1178)
||.|++||+.+++.+..+ . .|...|.+++|+ +++++++++.||.|++||+++++.+..+..+ ...+.++.+
T Consensus 228 dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (615)
T 1pgu_A 228 DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA 306 (615)
T ss_dssp TCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEE
T ss_pred CCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEe
Confidence 999999999999999998 6 889999999999 9999999999999999999999999888776 367777777
Q ss_pred -cCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecC------------------------------------
Q 001042 1015 -DRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSS------------------------------------ 1057 (1178)
Q Consensus 1015 -~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd------------------------------------ 1057 (1178)
+++.+++++.||.|++||+.+++.+..+.+|.+.|++++| |+
T Consensus 307 ~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~ 385 (615)
T 1pgu_A 307 TGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQE 385 (615)
T ss_dssp EETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTC
T ss_pred CCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcE
Confidence 7789999999999999999988887777776666555555 32
Q ss_pred ----------------------------------------------------------------------CCEEEEEeC-
Q 001042 1058 ----------------------------------------------------------------------DRGIITGSS- 1066 (1178)
Q Consensus 1058 ----------------------------------------------------------------------g~~L~sgs~- 1066 (1178)
++++++++.
T Consensus 386 l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 465 (615)
T 1pgu_A 386 YSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEE 465 (615)
T ss_dssp CEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETT
T ss_pred EEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecC
Confidence 334444444
Q ss_pred CCcEEEEECCCCceEEEEEecccCCcEEEE--ecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCC-
Q 001042 1067 DGLLRFWENDDGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQK- 1143 (1178)
Q Consensus 1067 Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~- 1143 (1178)
||.|++||+.++.... ..+.+|...|.++ +|++++|++|+.||.|++||+.++ +....+.+
T Consensus 466 d~~i~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~---------------~~~~~~~~~ 529 (615)
T 1pgu_A 466 GNTIQVFKLSDLEVSF-DLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR---------------EVKTSRWAF 529 (615)
T ss_dssp TSCEEEEETTEEEEEE-ECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---------------EEEECCSCC
T ss_pred CCeEEEEECCCccccc-cccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCC---------------cceeEeecC
Confidence 5555555555542211 5566788888776 789999999999999999999743 55666666
Q ss_pred CcccEEEEEEcC----------CCCEEEEEeCCCcEEEEECCCC
Q 001042 1144 TVAVVRCIASDL----------ERKRICSGGRNGLLRLWEATIN 1177 (1178)
Q Consensus 1144 h~~~V~~lafsp----------dg~~Las~s~Dg~V~IWdv~tg 1177 (1178)
|...|++++|+| ++++||+|+.||.|++||+.++
T Consensus 530 h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 573 (615)
T 1pgu_A 530 RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP 573 (615)
T ss_dssp CSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT
T ss_pred CCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCC
Confidence 999999999999 9999999999999999999875
No 9
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-39 Score=421.56 Aligned_cols=376 Identities=13% Similarity=0.104 Sum_probs=287.5
Q ss_pred cccCCcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccce
Q 001042 764 ASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREV 841 (1178)
Q Consensus 764 ~~gh~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~ 841 (1178)
..||...|.+++|||||++||+|+.| |++|+..+.+ .... ..|..+|++++|+
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~-------------------~~~~-~~~~~~V~~l~fs----- 67 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVE-------------------VVIK-LEDRSAIKEMRFV----- 67 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCE-------------------EEEE-CSSCCCEEEEEEE-----
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcE-------------------EEEE-cCCCCCEEEEEEc-----
Confidence 46899999999999999999999998 9999987544 3333 3488899999998
Q ss_pred eccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEE--ecCCCEEEEEeCCCcEEEEECCCCcEE---
Q 001042 842 WDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQLL--- 916 (1178)
Q Consensus 842 ~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~--s~d~~~l~sgs~dg~I~iwd~~t~~~~--- 916 (1178)
+ |++|++++.|++|++||+. ..+....+. |...|+++ +|+++++++|+.||+|++||+.+++..
T Consensus 68 -------p-g~~L~S~s~D~~v~lWd~~--~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~ 136 (902)
T 2oaj_A 68 -------K-GIYLVVINAKDTVYVLSLY--SQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFK 136 (902)
T ss_dssp -------T-TTEEEEEETTCEEEEEETT--TCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred -------C-CCEEEEEECcCeEEEEECC--CCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccce
Confidence 7 7899999999999999987 344455554 66777764 899999999999999999999988764
Q ss_pred --------EEecCCCCceEEEEEeC--CCeEEEEeCCCeEEEEeCCCCeEEEEecCC------------------CCCEE
Q 001042 917 --------EELKGHDAQVSCVRMLS--GERVLTASHDGTVKMWDVRTDTCVATVGRC------------------SSAVL 968 (1178)
Q Consensus 917 --------~~l~~h~~~V~~l~~~~--~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~------------------~~~I~ 968 (1178)
..+.+|.+.|++++|++ +..+++|+.||+| +||+++++++..+..+ ...|.
T Consensus 137 i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~ 215 (902)
T 2oaj_A 137 LDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVI 215 (902)
T ss_dssp ECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEE
T ss_pred eccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeE
Confidence 23467999999999995 3689999999999 9999999998888655 46799
Q ss_pred EEEEeCCCCEEEEEeCCCeEEEEECCCCceEEE--E---ec-------------CCccEEEEEE----cC---CEEEEEe
Q 001042 969 CMEYDDSTGILAAGGRDAVANIWDIRAGRQMHK--F---LG-------------HTKWIRSIRM----DR---DTVITGS 1023 (1178)
Q Consensus 969 ~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~--~---~~-------------~~~~v~~l~~----~~---~~l~sgs 1023 (1178)
+++|+|+|++|++|+.||.|++||+++++++.. + .. |...|.+++| ++ ..+++|+
T Consensus 216 ~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~ 295 (902)
T 2oaj_A 216 QSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHK 295 (902)
T ss_dssp EEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEE
T ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCC
Confidence 999999999999999999999999999887653 2 11 2346777777 22 2444443
Q ss_pred C----------------------------------------------------------------------------CCc
Q 001042 1024 D----------------------------------------------------------------------------DWT 1027 (1178)
Q Consensus 1024 ~----------------------------------------------------------------------------dg~ 1027 (1178)
. ||.
T Consensus 296 ~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~ 375 (902)
T 2oaj_A 296 SISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGE 375 (902)
T ss_dssp CSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSC
T ss_pred CCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCc
Confidence 3 344
Q ss_pred EEEEEcCCCeeeeE-------eccCCCcEE----------------------------------EEEEecCCCEEEEEeC
Q 001042 1028 ARMWSISRGTCDAV-------LACHAGPVQ----------------------------------CVEYSSSDRGIITGSS 1066 (1178)
Q Consensus 1028 I~iwd~~~~~~~~~-------~~~h~~~I~----------------------------------~l~~spdg~~L~sgs~ 1066 (1178)
|++||+.++..... +..|...|+ +++|+|++++|++|+.
T Consensus 376 l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~ 455 (902)
T 2oaj_A 376 IETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHS 455 (902)
T ss_dssp EEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEET
T ss_pred EEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecC
Confidence 55555544422111 112223344 4455788999999999
Q ss_pred CCcEEEEECCCCceEE---E-EEec-----ccCCcEEEE--ecCCCEEEEEeCCCcEEEEEcCCCccccc----------
Q 001042 1067 DGLLRFWENDDGGIKC---V-KNVT-----IHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGF---------- 1125 (1178)
Q Consensus 1067 Dg~I~iwd~~~~~~~~---~-~~~~-----~h~~~i~~i--s~dg~~Lasgs~Dg~I~iwd~~~~~~~~~---------- 1125 (1178)
||+|++||+.++.... . ..+. +|...|.++ +|+|++||+|+.||+|+|||+.+++....
T Consensus 456 DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~ 535 (902)
T 2oaj_A 456 NGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLE 535 (902)
T ss_dssp TSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC-------------
T ss_pred CCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccc
Confidence 9999999998874211 1 1122 788888766 89999999999999999999976531000
Q ss_pred --------------------cCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001042 1126 --------------------SGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATIN 1177 (1178)
Q Consensus 1126 --------------------~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~tg 1177 (1178)
...+.-..++++...+.+|.+.|++|+||||| +||+|+.||+|++||++++
T Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~ 606 (902)
T 2oaj_A 536 MNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGP 606 (902)
T ss_dssp --CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTT
T ss_pred eeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCC
Confidence 00000011245677888999999999999999 9999999999999998764
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-39 Score=418.61 Aligned_cols=385 Identities=12% Similarity=0.110 Sum_probs=292.6
Q ss_pred cc-cc-cCCCCC-----CCCC-------CCCCCcccccCCcceEEEEecCCCCcccccccc--eeecccccccCCCCCCC
Q 001042 743 SN-GM-PSPLSK-----DATN-------DDQQPAEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRK 806 (1178)
Q Consensus 743 ~~-~~-fSP~g~-----~~~~-------~~~~~~~~~gh~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~ 806 (1178)
.| ++ |||+|+ ..++ ...+.....+|...|.+++|+| |++|++++.| |++||+.+++
T Consensus 19 ~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~------- 90 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQK------- 90 (902)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCS-------
T ss_pred CcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCc-------
Confidence 44 77 899998 1111 2334444556788999999999 8899999988 9999999876
Q ss_pred CCCCcCCcccccceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceee----------
Q 001042 807 QDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELR---------- 876 (1178)
Q Consensus 807 ~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~---------- 876 (1178)
++..+. |.+.|++++|+ |+++++++|+.||+|++||+.. ....
T Consensus 91 ------------~~~~~~-~~~~V~~v~~s------------p~g~~l~sgs~dg~V~lwd~~~--~~~~~~~i~~~~~~ 143 (902)
T 2oaj_A 91 ------------VLTTVF-VPGKITSIDTD------------ASLDWMLIGLQNGSMIVYDIDR--DQLSSFKLDNLQKS 143 (902)
T ss_dssp ------------EEEEEE-CSSCEEEEECC------------TTCSEEEEEETTSCEEEEETTT--TEEEEEEECCHHHH
T ss_pred ------------EEEEEc-CCCCEEEEEEC------------CCCCEEEEEcCCCcEEEEECCC--Cccccceecccccc
Confidence 566665 77899999998 8999999999999999999873 2221
Q ss_pred -EeecccccceEE--EecC-CCEEEEEeCCCcEEEEECCCCcEEEEecCC------------------CCceEEEEEe-C
Q 001042 877 -ATLKGHTRTVRA--INSD-RGKVVSGSDDQSVLVWDKQTSQLLEELKGH------------------DAQVSCVRML-S 933 (1178)
Q Consensus 877 -~~l~~h~~~V~~--~s~d-~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h------------------~~~V~~l~~~-~ 933 (1178)
..+.+|...|.+ ++|+ +..+++|+.||.| +||+++++.+..+..| ...|++++|+ +
T Consensus 144 ~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspd 222 (902)
T 2oaj_A 144 SFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPN 222 (902)
T ss_dssp HTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTT
T ss_pred ccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCC
Confidence 234678888886 4775 4789999999999 9999999998888766 5779999999 7
Q ss_pred CCeEEEEeCCCeEEEEeCCCCeEEEE--ec---C-------------CCCCEEEEEEeC----CC-CEEEEEeCC-----
Q 001042 934 GERVLTASHDGTVKMWDVRTDTCVAT--VG---R-------------CSSAVLCMEYDD----ST-GILAAGGRD----- 985 (1178)
Q Consensus 934 ~~~l~sgs~dg~V~iwd~~~~~~~~~--~~---~-------------~~~~I~~l~~sp----~~-~~l~sgs~d----- 985 (1178)
+.++++|+.||+|++||+++++++.. +. . +...|.+++|++ ++ ..+++|+.+
T Consensus 223 g~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~ 302 (902)
T 2oaj_A 223 SLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDN 302 (902)
T ss_dssp SSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSC
T ss_pred CCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCC
Confidence 88999999999999999999987754 21 1 234689999953 32 345555443
Q ss_pred CeEEEEE-----------------------------------------------------------------------CC
Q 001042 986 AVANIWD-----------------------------------------------------------------------IR 994 (1178)
Q Consensus 986 g~I~lwD-----------------------------------------------------------------------~~ 994 (1178)
+.+.+|+ +.
T Consensus 303 ~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~ 382 (902)
T 2oaj_A 303 QSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYP 382 (902)
T ss_dssp CCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETT
T ss_pred ceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECC
Confidence 1444444 33
Q ss_pred CCceEEE-------EecCCccEEEEEE------------------------------------cCCEEEEEeCCCcEEEE
Q 001042 995 AGRQMHK-------FLGHTKWIRSIRM------------------------------------DRDTVITGSDDWTARMW 1031 (1178)
Q Consensus 995 ~~~~~~~-------~~~~~~~v~~l~~------------------------------------~~~~l~sgs~dg~I~iw 1031 (1178)
++..... +..|...|+++++ +++.+++|+.||+|++|
T Consensus 383 ~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlW 462 (902)
T 2oaj_A 383 SGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIY 462 (902)
T ss_dssp TCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEE
T ss_pred CCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEE
Confidence 3321111 1112234444443 24489999999999999
Q ss_pred EcCCCeee----eE--ec-----cCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCc---------------------
Q 001042 1032 SISRGTCD----AV--LA-----CHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGG--------------------- 1079 (1178)
Q Consensus 1032 d~~~~~~~----~~--~~-----~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~--------------------- 1079 (1178)
|+.++... .. +. +|...|++++|+|+|++||+|+.||+|++||+.+++
T Consensus 463 d~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (902)
T 2oaj_A 463 DASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFS 542 (902)
T ss_dssp ESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCC
T ss_pred ECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeecc
Confidence 99887431 11 11 788999999999999999999999999999998662
Q ss_pred ----------------------eEEEEEecccCCcEEEE--ecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccce
Q 001042 1080 ----------------------IKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGW 1135 (1178)
Q Consensus 1080 ----------------------~~~~~~~~~h~~~i~~i--s~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~ 1135 (1178)
..++..+.+|...|.++ |||| +||+|+.|++|++||+.+..+ +...
T Consensus 543 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~---------~~~~ 612 (902)
T 2oaj_A 543 LNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAI---------IYME 612 (902)
T ss_dssp GGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEE---------EEEE
T ss_pred ccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeE---------EEEe
Confidence 13567788899999776 7999 999999999999999864321 1000
Q ss_pred eEeeccC-CCcccEEEEEEc-----CCC---CEEEEEeCCCcEEEEEC
Q 001042 1136 QLYRTPQ-KTVAVVRCIASD-----LER---KRICSGGRNGLLRLWEA 1174 (1178)
Q Consensus 1136 ~~~~~~~-~h~~~V~~lafs-----pdg---~~Las~s~Dg~V~IWdv 1174 (1178)
. ...+. +|.+.|++|+|+ ||| ++|++|+.||+|++||+
T Consensus 613 ~-~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 613 N-IREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp E-GGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred e-hhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence 1 13454 899999999999 886 89999999999999998
No 11
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2e-38 Score=376.46 Aligned_cols=283 Identities=25% Similarity=0.496 Sum_probs=264.7
Q ss_pred CcccccCCcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeec
Q 001042 761 PAEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTK 838 (1178)
Q Consensus 761 ~~~~~gh~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~ 838 (1178)
...+.||..+|.+++|+|+++++++|+.| |++||+.++. ..+.+.+|.+.|++++|+
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~-------------------~~~~l~~h~~~V~~v~~~-- 159 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD-------------------FERTLKGHTDSVQDISFD-- 159 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC-------------------CCEEECCCSSCEEEEEEC--
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-------------------EEEEEeccCCcEEEEEEc--
Confidence 34567999999999999999999999998 9999999877 678899999999999998
Q ss_pred cceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEE--EecCCCEEEEEeCCCcEEEEECCCCcEE
Q 001042 839 REVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLL 916 (1178)
Q Consensus 839 ~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~ 916 (1178)
+++++|++|+.||+|++||+. +......+.+|...|.+ ++|+++++++|+.|++|++||+.+++++
T Consensus 160 ----------~~~~~l~sgs~D~~i~iwd~~--~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~ 227 (410)
T 1vyh_C 160 ----------HSGKLLASCSADMTIKLWDFQ--GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV 227 (410)
T ss_dssp ----------TTSSEEEEEETTSCCCEEETT--SSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEE
T ss_pred ----------CCCCEEEEEeCCCeEEEEeCC--CCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 899999999999999999976 56677889999999986 4799999999999999999999999999
Q ss_pred EEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCC--------------------
Q 001042 917 EELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDS-------------------- 975 (1178)
Q Consensus 917 ~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~-------------------- 975 (1178)
..+.+|...|.++.++ ++..+++|+.||+|++||+.++++...+..|...|.+++|+|+
T Consensus 228 ~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (410)
T 1vyh_C 228 KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKP 307 (410)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------
T ss_pred EEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCC
Confidence 9999999999999999 7889999999999999999999999999999999999999996
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEE
Q 001042 976 TGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMD--RDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVE 1053 (1178)
Q Consensus 976 ~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~ 1053 (1178)
+.++++|+.||.|++||+++++++..+.+|...|.+++|+ +.++++|+.||.|++||+.+++++..+.+|...|++++
T Consensus 308 g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~ 387 (410)
T 1vyh_C 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLD 387 (410)
T ss_dssp CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEE
Confidence 6789999999999999999999999999999999999995 45999999999999999999999999999999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEECC
Q 001042 1054 YSSSDRGIITGSSDGLLRFWEND 1076 (1178)
Q Consensus 1054 ~spdg~~L~sgs~Dg~I~iwd~~ 1076 (1178)
|+|++.+|++|+.||+|++|+.+
T Consensus 388 ~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 388 FHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp ECSSSSCEEEEETTSEEEEEC--
T ss_pred EcCCCCEEEEEeCCCcEEEEeCC
Confidence 99999999999999999999863
No 12
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=6.4e-39 Score=434.56 Aligned_cols=397 Identities=19% Similarity=0.312 Sum_probs=318.3
Q ss_pred ccCcc-cc-cCCCCC-----CCCC-------CCCC-CcccccCCcceEEEEecCCCCcccccccc--eeecccccccCCC
Q 001042 740 SSLSN-GM-PSPLSK-----DATN-------DDQQ-PAEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENG 802 (1178)
Q Consensus 740 ~~~~~-~~-fSP~g~-----~~~~-------~~~~-~~~~~gh~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~ 802 (1178)
..+.| ++ |||||+ ..++ .+++ ...+.+|...|.+++|||||+++|+++.| |++||+.++.
T Consensus 614 h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~--- 690 (1249)
T 3sfz_A 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGK--- 690 (1249)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC---
T ss_pred ccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCc---
Confidence 34556 77 999998 1111 3333 34557899999999999999999999988 9999999877
Q ss_pred CCCCCCCCcCCcccccceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeeccc
Q 001042 803 TPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGH 882 (1178)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h 882 (1178)
.+..+.+|.+.|++++|+|. .++.++++|+.||+|++||+. .......+.+|
T Consensus 691 ----------------~~~~~~~~~~~v~~~~~~~~----------~~~~~l~sg~~d~~v~vwd~~--~~~~~~~~~~h 742 (1249)
T 3sfz_A 691 ----------------LVHTYDEHSEQVNCCHFTNK----------SNHLLLATGSNDFFLKLWDLN--QKECRNTMFGH 742 (1249)
T ss_dssp ----------------EEEEEECCSSCEEEEEECSS----------SSCCEEEEEETTSCEEEEETT--SSSEEEEECCC
T ss_pred ----------------eEEEEcCCCCcEEEEEEecC----------CCceEEEEEeCCCeEEEEECC--CcchhheecCC
Confidence 78899999999999999831 267799999999999999976 55667888999
Q ss_pred ccceEE--EecCCCEEEEEeCCCcEEEEECCCCcEEEEe-----------------------------------------
Q 001042 883 TRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLLEEL----------------------------------------- 919 (1178)
Q Consensus 883 ~~~V~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l----------------------------------------- 919 (1178)
...|.+ ++|+++.+++|+.||+|++||+.+++....+
T Consensus 743 ~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~ 822 (1249)
T 3sfz_A 743 TNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL 822 (1249)
T ss_dssp SSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEE
T ss_pred CCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEE
Confidence 999985 5899999999999999999998776544332
Q ss_pred --------------cCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeC
Q 001042 920 --------------KGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGR 984 (1178)
Q Consensus 920 --------------~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~ 984 (1178)
.+|...|.+++|+ ++..+++++.||.|++||+.++..+..+.+|...|.+++|+|+++.+++++.
T Consensus 823 ~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~ 902 (1249)
T 3sfz_A 823 LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASD 902 (1249)
T ss_dssp EEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeC
Confidence 1677889999999 7889999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEECC----------------------------------------------------------------------
Q 001042 985 DAVANIWDIR---------------------------------------------------------------------- 994 (1178)
Q Consensus 985 dg~I~lwD~~---------------------------------------------------------------------- 994 (1178)
||.|++||+.
T Consensus 903 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~ 982 (1249)
T 3sfz_A 903 DQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDED 982 (1249)
T ss_dssp TSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETT
T ss_pred CCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCC
Confidence 9988888743
Q ss_pred ---------CCceEEEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEEcCC----------------------------
Q 001042 995 ---------AGRQMHKFLGHTKWIRSIRMD--RDTVITGSDDWTARMWSISR---------------------------- 1035 (1178)
Q Consensus 995 ---------~~~~~~~~~~~~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~---------------------------- 1035 (1178)
+++....+.+|...|.+++|+ ++++++++.||.|++||+.+
T Consensus 983 g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~ 1062 (1249)
T 3sfz_A 983 GAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWS 1062 (1249)
T ss_dssp SCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEE
T ss_pred CCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEE
Confidence 223334445677777777774 34677776666666666544
Q ss_pred ------------CeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE--ecCCC
Q 001042 1036 ------------GTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI--NAGDH 1101 (1178)
Q Consensus 1036 ------------~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~dg~ 1101 (1178)
++....+.+|.+.|++++|+|+++++++++.||+|++||+.++ .+...+.+|...|.++ +|+|+
T Consensus 1063 ~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~--~~~~~l~~h~~~v~~~~~s~dg~ 1140 (1249)
T 3sfz_A 1063 FDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLL--SPLHELKGHNGCVRCSAFSLDGI 1140 (1249)
T ss_dssp SSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSS--SCSBCCCCCSSCEEEEEECSSSS
T ss_pred CCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCc--ceeeeeccCCCcEEEEEECCCCC
Confidence 4445566678889999999999999999999999999999988 5666778899988766 89999
Q ss_pred EEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001042 1102 WLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATIN 1177 (1178)
Q Consensus 1102 ~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~tg 1177 (1178)
++++|+.||+|++||+.+++..... ..+.......+|.+.|++++|+|||++|++++ |.|++||+.+|
T Consensus 1141 ~lat~~~dg~i~vwd~~~~~~~~~~------~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g 1208 (1249)
T 3sfz_A 1141 LLATGDDNGEIRIWNVSDGQLLHSC------APISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATG 1208 (1249)
T ss_dssp EEEEEETTSCCCEEESSSSCCCCCC------CCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSC
T ss_pred EEEEEeCCCEEEEEECCCCceEEEe------ccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEECCCC
Confidence 9999999999999999855322111 01122223467889999999999999999985 99999999886
No 13
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.4e-38 Score=359.76 Aligned_cols=290 Identities=22% Similarity=0.380 Sum_probs=264.0
Q ss_pred ceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEE--ecCCCEE
Q 001042 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDRGKV 896 (1178)
Q Consensus 819 ~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~--s~d~~~l 896 (1178)
..+.+.+|.+.|++++|++... +++.+|+||+.||+|++||+..........+.+|...|.++ ++++..+
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~--------~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l 95 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKK--------ENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIA 95 (321)
T ss_dssp EEEETTSSSSCEEEEEEC---------------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEE
T ss_pred eeeecccCCCcEEEEEEecCCC--------CCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEE
Confidence 5577889999999999985211 46789999999999999998644445566789999999865 7899999
Q ss_pred EEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCC
Q 001042 897 VSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDS 975 (1178)
Q Consensus 897 ~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~ 975 (1178)
++++.|++|++||+.+++.+..+..|...+.+++|+ ++..+++|+.||.|++||+++++....+..+...+.+++|+|+
T Consensus 96 ~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spd 175 (321)
T 3ow8_A 96 ASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPD 175 (321)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTT
T ss_pred EEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCC
Confidence 999999999999999999999999999999999999 7889999999999999999999999888889999999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEcC--CEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEE
Q 001042 976 TGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR--DTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVE 1053 (1178)
Q Consensus 976 ~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~ 1053 (1178)
+++|++|+.||.|++||+++++.+..+.+|...|.+++|++ .+|++|+.||.|++||+++++....+.+|...|.+++
T Consensus 176 g~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~ 255 (321)
T 3ow8_A 176 GKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVA 255 (321)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEE
Confidence 99999999999999999999999999999999999999954 5999999999999999999999999999999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE--ecCCCEEEEEeCCCcEEEEEcC
Q 001042 1054 YSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRP 1118 (1178)
Q Consensus 1054 ~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~dg~~Lasgs~Dg~I~iwd~~ 1118 (1178)
|+|++++|++|+.||+|++||+.++ .++..+.+|...|.++ ++++++|++++.||+|++||.+
T Consensus 256 ~sp~~~~l~s~s~D~~v~iwd~~~~--~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 256 FCPDDTHFVSSSSDKSVKVWDVGTR--TCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTT--EEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred ECCCCCEEEEEeCCCcEEEEeCCCC--EEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 9999999999999999999999998 7888899999999776 7899999999999999999974
No 14
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.6e-38 Score=374.24 Aligned_cols=282 Identities=26% Similarity=0.479 Sum_probs=264.5
Q ss_pred eEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEE--EecCCCEEE
Q 001042 820 IRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVV 897 (1178)
Q Consensus 820 ~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~--~s~d~~~l~ 897 (1178)
...+.||.++|++++|+ |++.+|++|+.||+|++||+. .......+.+|...|.+ +++++++++
T Consensus 101 ~~~l~gh~~~V~~~~~~------------p~~~~l~s~s~Dg~i~vwd~~--~~~~~~~l~~h~~~V~~v~~~~~~~~l~ 166 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFH------------PVFSVMVSASEDATIKVWDYE--TGDFERTLKGHTDSVQDISFDHSGKLLA 166 (410)
T ss_dssp SCEEECCSSCEEEEEEC------------SSSSEEEEEESSSCEEEEETT--TCCCCEEECCCSSCEEEEEECTTSSEEE
T ss_pred eEeecccCCcEEEEEEc------------CCCCEEEEEeCCCeEEEEECC--CCcEEEEEeccCCcEEEEEEcCCCCEEE
Confidence 45688999999999998 899999999999999999976 55667889999999986 579999999
Q ss_pred EEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCC
Q 001042 898 SGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDST 976 (1178)
Q Consensus 898 sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~ 976 (1178)
+|+.||+|++||+.+++++..+.+|...|.+++|+ +++.+++|+.||+|++||++++.++..+.+|...|.++++++++
T Consensus 167 sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g 246 (410)
T 1vyh_C 167 SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG 246 (410)
T ss_dssp EEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS
T ss_pred EEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCC
Confidence 99999999999999999999999999999999999 67899999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEcC----------------------CEEEEEeCCCcEEEEEcC
Q 001042 977 GILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR----------------------DTVITGSDDWTARMWSIS 1034 (1178)
Q Consensus 977 ~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~----------------------~~l~sgs~dg~I~iwd~~ 1034 (1178)
.++++|+.||.|++||+++++....+.+|...|.+++|++ .++++|+.||.|++||++
T Consensus 247 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~ 326 (410)
T 1vyh_C 247 TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS 326 (410)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETT
T ss_pred CEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECC
Confidence 9999999999999999999999999999999999999964 489999999999999999
Q ss_pred CCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE--ecCCCEEEEEeCCCcE
Q 001042 1035 RGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSM 1112 (1178)
Q Consensus 1035 ~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~dg~~Lasgs~Dg~I 1112 (1178)
+++++..+.+|.+.|++++|+|+|++|++|+.||.|++||+.++ .++..+.+|...|.++ +|++.+|++|+.||+|
T Consensus 327 ~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~--~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i 404 (410)
T 1vyh_C 327 TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK--RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTV 404 (410)
T ss_dssp TTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS--CCCEEEECCSSCEEEEEECSSSSCEEEEETTSEE
T ss_pred CCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--ceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcE
Confidence 99999999999999999999999999999999999999999888 6677788999999877 7899999999999999
Q ss_pred EEEEc
Q 001042 1113 SLFHR 1117 (1178)
Q Consensus 1113 ~iwd~ 1117 (1178)
++|+.
T Consensus 405 ~vW~~ 409 (410)
T 1vyh_C 405 KVWEC 409 (410)
T ss_dssp EEEC-
T ss_pred EEEeC
Confidence 99985
No 15
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=6e-37 Score=351.06 Aligned_cols=285 Identities=19% Similarity=0.318 Sum_probs=259.3
Q ss_pred eeeEeecccccceEEE--ec----CCCEEEEEeCCCcEEEEECCCCcE--EEEecCCCCceEEEEEe-CCCeEEEEeCCC
Q 001042 874 ELRATLKGHTRTVRAI--NS----DRGKVVSGSDDQSVLVWDKQTSQL--LEELKGHDAQVSCVRML-SGERVLTASHDG 944 (1178)
Q Consensus 874 ~~~~~l~~h~~~V~~~--s~----d~~~l~sgs~dg~I~iwd~~t~~~--~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg 944 (1178)
.+.....+|...|.++ ++ ++..|++|+.|++|++||+.+++. ...+.+|...|.+++++ ++..+++++.||
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~ 102 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA 102 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred heeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCC
Confidence 3345677899999976 43 467899999999999999987754 45688999999999999 678899999999
Q ss_pred eEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEc--CCEEEEE
Q 001042 945 TVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMD--RDTVITG 1022 (1178)
Q Consensus 945 ~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg 1022 (1178)
+|++||+.+++.+..+..+...+.+++|+|+++++++|+.||.|++||+++++....+..+...+.+++|+ ++++++|
T Consensus 103 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg 182 (321)
T 3ow8_A 103 HIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG 182 (321)
T ss_dssp EEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred cEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEE
Confidence 99999999999999998888999999999999999999999999999999999999999999999999995 4599999
Q ss_pred eCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE--ecCC
Q 001042 1023 SDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI--NAGD 1100 (1178)
Q Consensus 1023 s~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~dg 1100 (1178)
+.||.|++||+++++.+..+.+|..+|++++|+|++++|++|+.||.|++||+.++ .....+.+|...|.++ +|++
T Consensus 183 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~h~~~v~~~~~sp~~ 260 (321)
T 3ow8_A 183 AIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA--NLAGTLSGHASWVLNVAFCPDD 260 (321)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC--CEEEEECCCSSCEEEEEECTTS
T ss_pred cCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc--ceeEEEcCCCCceEEEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999988 5677888999998766 7999
Q ss_pred CEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001042 1101 HWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEAT 1175 (1178)
Q Consensus 1101 ~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~ 1175 (1178)
.+|++|+.|++|++||+.++ +++.++.+|...|++++|+|+|++|++++.||+|++||..
T Consensus 261 ~~l~s~s~D~~v~iwd~~~~---------------~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 261 THFVSSSSDKSVKVWDVGTR---------------TCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp SEEEEEETTSCEEEEETTTT---------------EEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CEEEEEeCCCcEEEEeCCCC---------------EEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 99999999999999999743 6777788999999999999999999999999999999974
No 16
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.2e-36 Score=365.04 Aligned_cols=326 Identities=25% Similarity=0.494 Sum_probs=290.7
Q ss_pred ceEEecccccce-EEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEEecCCCEEE
Q 001042 819 NIRIIRGHAGAI-TALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVV 897 (1178)
Q Consensus 819 ~~~~l~gH~~~V-~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~ 897 (1178)
..+.+.||.+.| +++. ++++++++|+.||+|++||+. ..+....+.+|...|.++..+++.++
T Consensus 110 ~~~~l~~h~~~v~~~~~--------------~~g~~l~sg~~dg~i~vwd~~--~~~~~~~~~~h~~~v~~~~~~~~~l~ 173 (445)
T 2ovr_B 110 SPKVLKGHDDHVITCLQ--------------FCGNRIVSGSDDNTLKVWSAV--TGKCLRTLVGHTGGVWSSQMRDNIII 173 (445)
T ss_dssp CCEEEECSTTSCEEEEE--------------EETTEEEEEETTSCEEEEETT--TCCEEEECCCCSSCEEEEEEETTEEE
T ss_pred eeEEecccCCCcEEEEE--------------EcCCEEEEEECCCcEEEEECC--CCcEEEEEcCCCCCEEEEEecCCEEE
Confidence 467899999876 5544 458999999999999999976 55677889999999999888899999
Q ss_pred EEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCC
Q 001042 898 SGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTG 977 (1178)
Q Consensus 898 sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~ 977 (1178)
+|+.||+|++||+.+++.+..+.+|...|.++.++ ++.+++|+.||+|++||+.+++.+..+..|...|.++++ +++
T Consensus 174 s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~ 250 (445)
T 2ovr_B 174 SGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH-EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGR 250 (445)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE-TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSS
T ss_pred EEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec-CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCC
Confidence 99999999999999999999999999999999995 677999999999999999999999999999999999999 788
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEcCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecC
Q 001042 978 ILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSS 1057 (1178)
Q Consensus 978 ~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd 1057 (1178)
.+++|+.||.|++||+++++.+..+.+|...|.++++++..+++|+.||.|++||+++++.+..+.+|...+.++.++
T Consensus 251 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~-- 328 (445)
T 2ovr_B 251 RVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK-- 328 (445)
T ss_dssp CEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--
T ss_pred EEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999988875
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEEecc---cCCcEEEEecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccc
Q 001042 1058 DRGIITGSSDGLLRFWENDDGGIKCVKNVTI---HSSAILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSG 1134 (1178)
Q Consensus 1058 g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~---h~~~i~~is~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~ 1134 (1178)
++++++|+.||.|++||+.++ ..+..+.+ |...|.++..+++++++|+.||.|++||+.+++ .+..
T Consensus 329 ~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~---------~~~~ 397 (445)
T 2ovr_B 329 DNILVSGNADSTVKIWDIKTG--QCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGE---------FIRN 397 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTC--CEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCC---------EEEE
T ss_pred CCEEEEEeCCCeEEEEECCCC--cEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCc---------eeee
Confidence 679999999999999999988 56666665 888999999999999999999999999998442 1110
Q ss_pred eeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCc----EEEEECCCC
Q 001042 1135 WQLYRTPQKTVAVVRCIASDLERKRICSGGRNGL----LRLWEATIN 1177 (1178)
Q Consensus 1135 ~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~----V~IWdv~tg 1177 (1178)
.. .....+|.+.|++++|+|+|.++|+|+.||+ |.|||+...
T Consensus 398 ~~-~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 398 LV-TLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EE-ECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred ee-ccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 00 0112478889999999999999999999998 999999853
No 17
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.3e-36 Score=351.30 Aligned_cols=282 Identities=24% Similarity=0.387 Sum_probs=258.0
Q ss_pred ceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEE--EecCCCEE
Q 001042 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKV 896 (1178)
Q Consensus 819 ~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~--~s~d~~~l 896 (1178)
..+++.||.+.|++++|+ +|+++|++|+.||+|++||+. .......+..|...|.+ ++|+++++
T Consensus 47 ~~~~l~gH~~~v~~~~~s------------~d~~~l~s~s~Dg~v~iWd~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l 112 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWG------------TDSRLLLSASQDGKLIIWDSY--TTNKVHAIPLRSSWVMTCAYAPSGNYV 112 (340)
T ss_dssp EEEEECCCSSCEEEEEEC------------TTSSEEEEEETTTEEEEEETT--TCCEEEEEECSSSCEEEEEECTTSSEE
T ss_pred hheeecCCCCceEEEEEC------------CCCCEEEEEeCCCcEEEEECC--CCCcceEeecCCccEEEEEECCCCCEE
Confidence 567899999999999998 899999999999999999976 45566778889988885 58999999
Q ss_pred EEEeCCCcEEEEECCCC----cEEEEecCCCCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEE
Q 001042 897 VSGSDDQSVLVWDKQTS----QLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEY 972 (1178)
Q Consensus 897 ~sgs~dg~I~iwd~~t~----~~~~~l~~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~ 972 (1178)
++|+.|+.|++||+.++ +....+.+|.+.|.++.|++++.+++++.||+|++||+.+++.+..+.+|...|.+++|
T Consensus 113 ~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~ 192 (340)
T 1got_B 113 ACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSL 192 (340)
T ss_dssp EEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred EEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEE
Confidence 99999999999999875 35667889999999999998788999999999999999999999999999999999999
Q ss_pred eCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCeeeeEecc--CCCc
Q 001042 973 DDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMD--RDTVITGSDDWTARMWSISRGTCDAVLAC--HAGP 1048 (1178)
Q Consensus 973 sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--h~~~ 1048 (1178)
+|+++++++|+.||.|++||+++++....+.+|...|.+++|+ ++++++|+.||+|++||+++++.+..+.. +...
T Consensus 193 ~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~ 272 (340)
T 1got_B 193 APDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG 272 (340)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSC
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccc
Confidence 9999999999999999999999999999999999999999995 45999999999999999999988777653 3357
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE--ecCCCEEEEEeCCCcEEEEE
Q 001042 1049 VQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFH 1116 (1178)
Q Consensus 1049 I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~dg~~Lasgs~Dg~I~iwd 1116 (1178)
|++++|+|+|+++++|+.||.|++||+.++ .....+.+|...|.++ +|+|.+|++|+.||+|++||
T Consensus 273 v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~--~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKA--DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTC--CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred eEEEEECCCCCEEEEECCCCeEEEEEcccC--cEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 999999999999999999999999999988 5677888999999776 79999999999999999996
No 18
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.8e-36 Score=350.08 Aligned_cols=282 Identities=19% Similarity=0.382 Sum_probs=253.6
Q ss_pred eeeEeecccccceEE--EecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEe
Q 001042 874 ELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWD 950 (1178)
Q Consensus 874 ~~~~~l~~h~~~V~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd 950 (1178)
.....+.+|...|.+ ++++++++++|+.||+|++||..+++.+..+..|...|.+++|+ ++..+++|+.|+.|++||
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~ 125 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 455789999999996 48999999999999999999999999999999999999999999 788999999999999999
Q ss_pred CCCC----eEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEcC--CEEEEEeC
Q 001042 951 VRTD----TCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR--DTVITGSD 1024 (1178)
Q Consensus 951 ~~~~----~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~--~~l~sgs~ 1024 (1178)
+.++ .....+.+|...|.++.|++++. +++++.||.|++||+++++.+..+.+|.+.|.++++++ .++++|+.
T Consensus 126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~ 204 (340)
T 1got_B 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGAC 204 (340)
T ss_dssp TTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred CccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeC
Confidence 9875 45667788999999999998875 88999999999999999999999999999999999954 49999999
Q ss_pred CCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEec--ccCCcEEEE--ecCC
Q 001042 1025 DWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVT--IHSSAILSI--NAGD 1100 (1178)
Q Consensus 1025 dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~--~h~~~i~~i--s~dg 1100 (1178)
||.|++||++++++...+.+|...|++++|+|++++|++|+.||+|++||+.++ ..+..+. .+...+.++ +|+|
T Consensus 205 d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~--~~~~~~~~~~~~~~v~~~~~s~~g 282 (340)
T 1got_B 205 DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD--QELMTYSHDNIICGITSVSFSKSG 282 (340)
T ss_dssp TSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--EEEEEECCTTCCSCEEEEEECTTS
T ss_pred CCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC--cEEEEEccCCcccceEEEEECCCC
Confidence 999999999999999999999999999999999999999999999999999988 3444443 333456554 8999
Q ss_pred CEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001042 1101 HWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWE 1173 (1178)
Q Consensus 1101 ~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWd 1173 (1178)
+++++|+.||.|++||+.+. +....+.+|...|++++|+|||++||||+.||+|+|||
T Consensus 283 ~~l~~g~~d~~i~vwd~~~~---------------~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 283 RLLLAGYDDFNCNVWDALKA---------------DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SEEEEEETTSEEEEEETTTC---------------CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CEEEEECCCCeEEEEEcccC---------------cEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 99999999999999998733 44556779999999999999999999999999999997
No 19
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-36 Score=360.55 Aligned_cols=336 Identities=15% Similarity=0.236 Sum_probs=281.1
Q ss_pred ecccccceEEEEeeeccceeccccccCCCC-EEEEEeCCCcEEEEcC----CCCCc----eeeEeecc----------cc
Q 001042 823 IRGHAGAITALHCVTKREVWDLVGDREDAG-FFISGSTDCLVKIWDP----SLRGS----ELRATLKG----------HT 883 (1178)
Q Consensus 823 l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~-~Lasgs~Dg~I~iWd~----~~~~~----~~~~~l~~----------h~ 883 (1178)
...|.++|++++|+ |+++ +||+|+.||.|++||+ ..... .....+.. |.
T Consensus 41 ~~~~~~~v~~~~~s------------~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (425)
T 1r5m_A 41 EIVKLDNIVSSTWN------------PLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTT 108 (425)
T ss_dssp EEEECSCCSEEEEC------------SSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------C
T ss_pred eeeccCceEEEEEC------------CCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCC
Confidence 34466999999998 8899 9999999999999998 52221 02233332 67
Q ss_pred cceEE--EecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEe
Q 001042 884 RTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATV 960 (1178)
Q Consensus 884 ~~V~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~ 960 (1178)
..|.+ +++++++|++|+.||.|++|| .+++.+..+.+|...|.+++|+ ++..+++++.||.|++||+.+++.+..+
T Consensus 109 ~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 187 (425)
T 1r5m_A 109 NQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHF 187 (425)
T ss_dssp BCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEE
T ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEe
Confidence 78875 589999999999999999999 7788899999999999999999 7888999999999999999999999988
Q ss_pred cCCCCC---------------EEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEc--CCEEEEEe
Q 001042 961 GRCSSA---------------VLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMD--RDTVITGS 1023 (1178)
Q Consensus 961 ~~~~~~---------------I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sgs 1023 (1178)
..+... +.+++|++++ .+++++.+|.|++||+++++.+..+..|...|.+++|+ ++++++++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 266 (425)
T 1r5m_A 188 ELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSAS 266 (425)
T ss_dssp CCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEE
T ss_pred eccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEc
Confidence 777666 8999999875 58889999999999999999999999999999999995 45899999
Q ss_pred CCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE--ecCCC
Q 001042 1024 DDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI--NAGDH 1101 (1178)
Q Consensus 1024 ~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~dg~ 1101 (1178)
.||.|++||+++++....+..|...|.+++|+|++ ++++++.||.|++||+.++ ..+..+..|...+.++ +|+++
T Consensus 267 ~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~i~~~~~s~~~~ 343 (425)
T 1r5m_A 267 DDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN--TLLALSIVDGVPIFAGRISQDGQ 343 (425)
T ss_dssp TTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT--EEEEEEECTTCCEEEEEECTTSS
T ss_pred CCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC--cEeEecccCCccEEEEEEcCCCC
Confidence 99999999999999999999999999999999999 9999999999999999988 6777778888888766 79999
Q ss_pred EEEEEeCCCcEEEEEcCCCccccccCCCCC-----ccceeEeeccCCCcc--cEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001042 1102 WLGIGAADNSMSLFHRPQERLGGFSGTGSK-----MSGWQLYRTPQKTVA--VVRCIASDLERKRICSGGRNGLLRLWEA 1174 (1178)
Q Consensus 1102 ~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~-----~~~~~~~~~~~~h~~--~V~~lafspdg~~Las~s~Dg~V~IWdv 1174 (1178)
+|++|+.||.|++||+.+.........+.. ....+.+..+.+|.. .|++++|+|++++|++++.||.|++|++
T Consensus 344 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 423 (425)
T 1r5m_A 344 KYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAI 423 (425)
T ss_dssp EEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEEC
T ss_pred EEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEee
Confidence 999999999999999975431000000000 001136677788876 9999999999999999999999999998
Q ss_pred C
Q 001042 1175 T 1175 (1178)
Q Consensus 1175 ~ 1175 (1178)
+
T Consensus 424 ~ 424 (425)
T 1r5m_A 424 P 424 (425)
T ss_dssp C
T ss_pred c
Confidence 6
No 20
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=8.8e-36 Score=346.35 Aligned_cols=283 Identities=20% Similarity=0.339 Sum_probs=252.8
Q ss_pred eeeEeecccccceEE--EecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEe
Q 001042 874 ELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWD 950 (1178)
Q Consensus 874 ~~~~~l~~h~~~V~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd 950 (1178)
.....+.+|...|.+ +++++++|++|+.||+|++||..+++....+..|...|.+++|+ ++..+++|+.|+.+++|+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence 445788999999996 48999999999999999999999999999999999999999999 788999999999999999
Q ss_pred CCCC------eEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEc----CCEEE
Q 001042 951 VRTD------TCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMD----RDTVI 1020 (1178)
Q Consensus 951 ~~~~------~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~----~~~l~ 1020 (1178)
+... .....+..|...|.+++|+|++..+++++.||.|++||+++++.+..+.+|...|.++++. ++.++
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~ 214 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFV 214 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEE
T ss_pred EeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEE
Confidence 8653 2345566789999999999999999999999999999999999999999999999999884 35999
Q ss_pred EEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecc--cCCcE--EEE
Q 001042 1021 TGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTI--HSSAI--LSI 1096 (1178)
Q Consensus 1021 sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~--h~~~i--~~i 1096 (1178)
+|+.||.|++||+++++++..+.+|...|++++|+|+++++++|+.|++|++||+.++ .....+.. +...+ .++
T Consensus 215 sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~--~~~~~~~~~~~~~~~~~~~~ 292 (354)
T 2pbi_B 215 SGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD--REVAIYSKESIIFGASSVDF 292 (354)
T ss_dssp EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--EEEEEECCTTCCSCEEEEEE
T ss_pred EEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC--cEEEEEcCCCcccceeEEEE
Confidence 9999999999999999999999999999999999999999999999999999999987 34444433 23344 445
Q ss_pred ecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001042 1097 NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWE 1173 (1178)
Q Consensus 1097 s~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWd 1173 (1178)
+|+|.++++|+.|++|++||+.++ +.+..+.+|...|++++|+|||++|++|+.||+|+||+
T Consensus 293 s~~g~~l~~g~~d~~i~vwd~~~~---------------~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 293 SLSGRLLFAGYNDYTINVWDVLKG---------------SRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTC---------------SEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred eCCCCEEEEEECCCcEEEEECCCC---------------ceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 899999999999999999999733 44556779999999999999999999999999999996
No 21
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.4e-35 Score=336.84 Aligned_cols=283 Identities=18% Similarity=0.354 Sum_probs=252.6
Q ss_pred ceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEE--EecCCCEE
Q 001042 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKV 896 (1178)
Q Consensus 819 ~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~--~s~d~~~l 896 (1178)
..+++.+|.+.|++++|+ |++++|++|+.||+|++||+. .......+.+|...|.+ ++++++++
T Consensus 5 ~~~~~~~h~~~V~~~~fs------------p~~~~l~s~~~dg~v~lWd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l 70 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFH------------PTEPWVLTTLYSGRVELWNYE--TQVEVRSIQVTETPVRAGKFIARKNWI 70 (304)
T ss_dssp CEEEEEEECSCEEEEEEC------------SSSSEEEEEETTSEEEEEETT--TTEEEEEEECCSSCEEEEEEEGGGTEE
T ss_pred eEEeecCCCCceEEEEEC------------CCCCEEEEEcCCCcEEEEECC--CCceeEEeeccCCcEEEEEEeCCCCEE
Confidence 567899999999999998 899999999999999999976 55667888899998885 58999999
Q ss_pred EEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCC-eEEEEecCCCCCEEEEEEeC
Q 001042 897 VSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTD-TCVATVGRCSSAVLCMEYDD 974 (1178)
Q Consensus 897 ~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~-~~~~~~~~~~~~I~~l~~sp 974 (1178)
++|+.|++|++||+.+++.+..+.+|...|.+++|+ ++.++++|+.||+|++||++++ .....+.+|...|.+++|+|
T Consensus 71 ~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p 150 (304)
T 2ynn_A 71 IVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNP 150 (304)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECT
T ss_pred EEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECC
Confidence 999999999999999999999999999999999999 6789999999999999999887 55677889999999999999
Q ss_pred -CCCEEEEEeCCCeEEEEECCCCceEEEEe-cCCccEEEEEEc----CCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCc
Q 001042 975 -STGILAAGGRDAVANIWDIRAGRQMHKFL-GHTKWIRSIRMD----RDTVITGSDDWTARMWSISRGTCDAVLACHAGP 1048 (1178)
Q Consensus 975 -~~~~l~sgs~dg~I~lwD~~~~~~~~~~~-~~~~~v~~l~~~----~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~ 1048 (1178)
++..+++|+.||.|++||++++.....+. +|...+..+.+. +.++++|+.||+|++||+++++++.++.+|...
T Consensus 151 ~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~ 230 (304)
T 2ynn_A 151 KDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSN 230 (304)
T ss_dssp TCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCC
Confidence 67899999999999999999887766654 456788888884 358999999999999999999999999999999
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE--ecCCC--EEEEEeCCCcEEEEEcC
Q 001042 1049 VQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI--NAGDH--WLGIGAADNSMSLFHRP 1118 (1178)
Q Consensus 1049 I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~dg~--~Lasgs~Dg~I~iwd~~ 1118 (1178)
|++++|+|++++|++|+.||+|++||..++ +....+..|...+.++ +|++. ++++|+.| .+.+|++.
T Consensus 231 v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~-g~~~~~~~ 301 (304)
T 2ynn_A 231 VSFAVFHPTLPIIISGSEDGTLKIWNSSTY--KVEKTLNVGLERSWCIATHPTGRKNYIASGFDN-GFTVLSLG 301 (304)
T ss_dssp EEEEEECSSSSEEEEEETTSCEEEEETTTC--CEEEEECCSSSSEEEEEECTTCGGGCEEEEETT-EEEEEECC
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEECCCC--ceeeeccCCCccEEEEEECCCCCceEEEEecCC-ceEEEEec
Confidence 999999999999999999999999999998 6777888888888776 56664 57777655 57788875
No 22
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=8.7e-37 Score=355.23 Aligned_cols=314 Identities=13% Similarity=0.211 Sum_probs=231.4
Q ss_pred EEecCCCCcccccccc-eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceeccccccCCCC
Q 001042 774 SMFSREASSRSHSFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAG 852 (1178)
Q Consensus 774 ~aFSpdg~~las~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~ 852 (1178)
+-+.+++.++.+.+.. ...|++.... ..+|++.|++++|+ |||+
T Consensus 11 ~d~g~~~~~~~~~g~~~~~~w~~p~~~-----------------------p~~H~~~V~~v~fS------------pDG~ 55 (357)
T 4g56_B 11 VDLGTENLYFQSNGSSKGSAWGRPVTA-----------------------PACMEVQIGAVRYR------------RDGA 55 (357)
T ss_dssp ----------------------------------------------------CCCSEEEEEEEC------------SSSC
T ss_pred CCCCccceEEecCCCccccccCCCCCC-----------------------cccccCCEEEEEEC------------CCCC
Confidence 3455666665555544 7777665322 23578888888887 7888
Q ss_pred EEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEEeCCCcEEEEECCCCcE----EEEecCCCCceEE
Q 001042 853 FFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQL----LEELKGHDAQVSC 928 (1178)
Q Consensus 853 ~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sgs~dg~I~iwd~~t~~~----~~~l~~h~~~V~~ 928 (1178)
+||+|+.|+ +++|| +.|++|+..++.. .....+|...|.+
T Consensus 56 ~las~s~d~-~~~wd-----------------------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~ 99 (357)
T 4g56_B 56 LLLAASSLS-SRTWG-----------------------------------GSIWVFKDPEGAPNESLCTAGVQTEAGVTD 99 (357)
T ss_dssp EEEEEECSS-SSSCC-----------------------------------EEEEEESSCC---CGGGCSEEEECSSCEEE
T ss_pred EEEEEcCCC-Ccccc-----------------------------------CeEEEEECCCCCcceeEecccCCCCCCEEE
Confidence 888888754 24443 4456666655433 2233468889999
Q ss_pred EEEeCCCeEEEEeCCCeEEEEeCCCCeEEE----EecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEec
Q 001042 929 VRMLSGERVLTASHDGTVKMWDVRTDTCVA----TVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLG 1004 (1178)
Q Consensus 929 l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~----~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~ 1004 (1178)
++|++++.+++++.||+|++||+.+++... ...+|...|.+++|+|++++|++|+.||.|++||+++++.+..+.+
T Consensus 100 ~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~ 179 (357)
T 4g56_B 100 VAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNA 179 (357)
T ss_dssp EEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC
Confidence 999988889999999999999999887543 3347889999999999999999999999999999999999999999
Q ss_pred CCccEEEEEEcC---CEEEEEeCCCcEEEEEcCCCeeeeEec--cCCCcEEEEEEecC-CCEEEEEeCCCcEEEEECCCC
Q 001042 1005 HTKWIRSIRMDR---DTVITGSDDWTARMWSISRGTCDAVLA--CHAGPVQCVEYSSS-DRGIITGSSDGLLRFWENDDG 1078 (1178)
Q Consensus 1005 ~~~~v~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~--~h~~~I~~l~~spd-g~~L~sgs~Dg~I~iwd~~~~ 1078 (1178)
|...|.+++|++ ..+++++.||.|++||+++++....+. .|...+++++|+|+ +.++++|+.|+.|++||+.++
T Consensus 180 h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~ 259 (357)
T 4g56_B 180 HSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP 259 (357)
T ss_dssp CSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG
T ss_pred CCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC
Confidence 999999999953 379999999999999999988766544 56778999999997 467899999999999999988
Q ss_pred ceEEEEEecccCCcEEEE--ecCC-CEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcC
Q 001042 1079 GIKCVKNVTIHSSAILSI--NAGD-HWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDL 1155 (1178)
Q Consensus 1079 ~~~~~~~~~~h~~~i~~i--s~dg-~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafsp 1155 (1178)
.....+.+|...|.++ +|++ ++||+|+.|++|+|||+.++ ++... .+|.+.|++++|+|
T Consensus 260 --~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~---------------~~~~~-~~H~~~V~~vafsP 321 (357)
T 4g56_B 260 --DSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS---------------EVFRD-LSHRDFVTGVAWSP 321 (357)
T ss_dssp --GGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC---------------EEEEE-CCCSSCEEEEEECS
T ss_pred --cEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC---------------cEeEE-CCCCCCEEEEEEeC
Confidence 5667788999998776 6776 68999999999999998743 34433 37999999999998
Q ss_pred -CCCEEEEEeCCCcEEEEECCC
Q 001042 1156 -ERKRICSGGRNGLLRLWEATI 1176 (1178)
Q Consensus 1156 -dg~~Las~s~Dg~V~IWdv~t 1176 (1178)
|+++|||||.||+|++|++.+
T Consensus 322 ~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 322 LDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp SSTTEEEEEETTSCEEEEECC-
T ss_pred CCCCEEEEEcCCCeEEEEECCC
Confidence 899999999999999999965
No 23
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=8.8e-36 Score=346.33 Aligned_cols=282 Identities=21% Similarity=0.384 Sum_probs=256.2
Q ss_pred cccccCCcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeecc
Q 001042 762 AEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKR 839 (1178)
Q Consensus 762 ~~~~gh~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~ 839 (1178)
..+.||...|.+++|+|||+++++|+.| |++||..++. ..+.+..|...|.+++|+
T Consensus 58 ~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~-------------------~~~~~~~~~~~v~~~~~s--- 115 (354)
T 2pbi_B 58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTN-------------------KEHAVTMPCTWVMACAYA--- 115 (354)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-------------------EEEEEECSSSCCCEEEEC---
T ss_pred EEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCC-------------------cceEEecCCCCEEEEEEC---
Confidence 4568999999999999999999999999 9999988766 677888899999999998
Q ss_pred ceeccccccCCCCEEEEEeCCCcEEEEcCCCCC----ceeeEeecccccceEE--EecCCCEEEEEeCCCcEEEEECCCC
Q 001042 840 EVWDLVGDREDAGFFISGSTDCLVKIWDPSLRG----SELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTS 913 (1178)
Q Consensus 840 ~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~----~~~~~~l~~h~~~V~~--~s~d~~~l~sgs~dg~I~iwd~~t~ 913 (1178)
|+|.++++|+.|+.+++|++.... ......+.+|...|.+ +++++..+++++.||+|++||++++
T Consensus 116 ---------p~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~ 186 (354)
T 2pbi_B 116 ---------PSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESG 186 (354)
T ss_dssp ---------TTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC
T ss_pred ---------CCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Confidence 899999999999999999976321 2345677789998885 5899999999999999999999999
Q ss_pred cEEEEecCCCCceEEEEEe---CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 001042 914 QLLEELKGHDAQVSCVRML---SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANI 990 (1178)
Q Consensus 914 ~~~~~l~~h~~~V~~l~~~---~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~l 990 (1178)
+.+..+.+|...|.+++++ +++.+++|+.||+|++||+++++++..+..|...|.+++|+|+++.+++|+.||.|++
T Consensus 187 ~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~l 266 (354)
T 2pbi_B 187 QLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRL 266 (354)
T ss_dssp CEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred eEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEE
Confidence 9999999999999999997 3579999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCceEEEEecC--CccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeC
Q 001042 991 WDIRAGRQMHKFLGH--TKWIRSIRMD--RDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSS 1066 (1178)
Q Consensus 991 wD~~~~~~~~~~~~~--~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~ 1066 (1178)
||+++++.+..+..+ ...+.+++|+ +.++++|+.|+.|++||+.+++.+..+.+|.+.|++++|+|+|++|++|+.
T Consensus 267 wd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~ 346 (354)
T 2pbi_B 267 YDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSW 346 (354)
T ss_dssp EETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred EECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcC
Confidence 999998887776543 3478899985 569999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEE
Q 001042 1067 DGLLRFWE 1074 (1178)
Q Consensus 1067 Dg~I~iwd 1074 (1178)
||+|++|+
T Consensus 347 D~~v~vW~ 354 (354)
T 2pbi_B 347 DHTLRVWA 354 (354)
T ss_dssp TSEEEEEC
T ss_pred CCCEEecC
Confidence 99999995
No 24
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=3e-35 Score=352.81 Aligned_cols=315 Identities=27% Similarity=0.524 Sum_probs=287.1
Q ss_pred cccccCCcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeecc
Q 001042 762 AEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKR 839 (1178)
Q Consensus 762 ~~~~gh~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~ 839 (1178)
....||...++. +++++|+++++|+.| |++||+.+++ .+..+.+|.+.|++++|+
T Consensus 112 ~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~-------------------~~~~~~~h~~~v~~~~~~--- 168 (445)
T 2ovr_B 112 KVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGK-------------------CLRTLVGHTGGVWSSQMR--- 168 (445)
T ss_dssp EEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCC-------------------EEEECCCCSSCEEEEEEE---
T ss_pred EEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCc-------------------EEEEEcCCCCCEEEEEec---
Confidence 446788887755 477789999999999 9999999877 788899999999999985
Q ss_pred ceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 001042 840 EVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEEL 919 (1178)
Q Consensus 840 ~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l 919 (1178)
++++++|+.||+|++||+. ..+....+.+|...|.++..+++.+++|+.||+|++||+.+++.+..+
T Consensus 169 -----------~~~l~s~~~dg~i~vwd~~--~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~ 235 (445)
T 2ovr_B 169 -----------DNIIISGSTDRTLKVWNAE--TGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVL 235 (445)
T ss_dssp -----------TTEEEEEETTSCEEEEETT--TTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEE
T ss_pred -----------CCEEEEEeCCCeEEEEECC--cCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEE
Confidence 6799999999999999976 556778899999999999889999999999999999999999999999
Q ss_pred cCCCCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceE
Q 001042 920 KGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQM 999 (1178)
Q Consensus 920 ~~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~ 999 (1178)
.+|...|.++.+ ++..+++|+.||.|++||+++++.+..+..|...|.++++ ++..+++|+.||.|++||+++++.+
T Consensus 236 ~~~~~~v~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~ 312 (445)
T 2ovr_B 236 MGHVAAVRCVQY-DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCI 312 (445)
T ss_dssp ECCSSCEEEEEE-CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEE
T ss_pred cCCcccEEEEEE-CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEE
Confidence 999999999999 7889999999999999999999999999999999999999 7889999999999999999999999
Q ss_pred EEEecCCccEEEEEEcCCEEEEEeCCCcEEEEEcCCCeeeeEecc---CCCcEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 001042 1000 HKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLAC---HAGPVQCVEYSSSDRGIITGSSDGLLRFWEND 1076 (1178)
Q Consensus 1000 ~~~~~~~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~ 1076 (1178)
..+.+|...+.++.++++.+++|+.||.|++||+++++.+..+.. |...|++++|+ ++++++|+.||.|++||+.
T Consensus 313 ~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 313 HTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLK 390 (445)
T ss_dssp EEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETT
T ss_pred EEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECC
Confidence 999999999999999999999999999999999999999999886 88899999996 6899999999999999999
Q ss_pred CCceEEEEEe-----cccCCcEEEE--ecCCCEEEEEeCCCc----EEEEEcCC
Q 001042 1077 DGGIKCVKNV-----TIHSSAILSI--NAGDHWLGIGAADNS----MSLFHRPQ 1119 (1178)
Q Consensus 1077 ~~~~~~~~~~-----~~h~~~i~~i--s~dg~~Lasgs~Dg~----I~iwd~~~ 1119 (1178)
++ ..+..+ .+|...|.++ +|++.++++|+.||+ |.+||...
T Consensus 391 ~~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 391 TG--EFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp TC--CEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CC--ceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 98 444444 4677888766 799999999999998 99999863
No 25
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-36 Score=355.32 Aligned_cols=333 Identities=15% Similarity=0.213 Sum_probs=282.9
Q ss_pred cccccCCcceEEEEecCCCC-cccccccc--eeeccc----ccccCCCCCCCCCCCcCCcccccceE------Eeccccc
Q 001042 762 AEASGIGRSWVQSMFSREAS-SRSHSFSR--VRKWTS----DAANENGTPRKQDSTAGGKKIQSNIR------IIRGHAG 828 (1178)
Q Consensus 762 ~~~~gh~~~i~~~aFSpdg~-~las~~~d--I~vWd~----~~~~~~~~~~~~~~~~~~~~~~~~~~------~l~gH~~ 828 (1178)
+....|...|.+++|||||+ ++|+++.| |++|++ .++...-.. ........ ...+|.+
T Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~ 109 (425)
T 1r5m_A 39 LKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKL---------TIIAELRHPFALSASSGKTTN 109 (425)
T ss_dssp CEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEE---------EEEEEEECCCCCC------CB
T ss_pred eeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccc---------cccccccccccccccccCCCC
Confidence 34455668999999999999 99999988 999999 655410000 00000111 1234788
Q ss_pred ceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEE--EecCCCEEEEEeCCCcEE
Q 001042 829 AITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVL 906 (1178)
Q Consensus 829 ~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~--~s~d~~~l~sgs~dg~I~ 906 (1178)
.|++++|+ |++++|++|+.||.|++||. .......+.+|...|.+ ++++++++++++.||.|+
T Consensus 110 ~v~~~~~s------------~~~~~l~~~~~dg~i~i~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 174 (425)
T 1r5m_A 110 QVTCLAWS------------HDGNSIVTGVENGELRLWNK---TGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTI 174 (425)
T ss_dssp CEEEEEEC------------TTSSEEEEEETTSCEEEEET---TSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEE
T ss_pred ceEEEEEc------------CCCCEEEEEeCCCeEEEEeC---CCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEE
Confidence 99999998 89999999999999999993 35566788899999986 479999999999999999
Q ss_pred EEECCCCcEEEEecCCCCc---------------eEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEE
Q 001042 907 VWDKQTSQLLEELKGHDAQ---------------VSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCME 971 (1178)
Q Consensus 907 iwd~~t~~~~~~l~~h~~~---------------V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~ 971 (1178)
+||+.+++.+..+..+... +.+++|+++..+++++.||.|++||+.+++.+..+..|...|.+++
T Consensus 175 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~ 254 (425)
T 1r5m_A 175 LWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLE 254 (425)
T ss_dssp EEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEE
T ss_pred EEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEE
Confidence 9999999999999888777 9999999888999999999999999999999888989999999999
Q ss_pred EeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEcCC-EEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEE
Q 001042 972 YDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD-TVITGSDDWTARMWSISRGTCDAVLACHAGPVQ 1050 (1178)
Q Consensus 972 ~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~ 1050 (1178)
|+|+++++++++.||.|++||+++++.+..+..|...|.+++|+++ .+++++.||.|++||+++++.+..+..|...|+
T Consensus 255 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~ 334 (425)
T 1r5m_A 255 FNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIF 334 (425)
T ss_dssp EETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEECTTCCEE
T ss_pred ECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEecccCCccEE
Confidence 9999999999999999999999999999999999999999999655 999999999999999999999999999999999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEECCCCc------------------eEEEEEecccCC--cEEEE--ecCCCEEEEEeC
Q 001042 1051 CVEYSSSDRGIITGSSDGLLRFWENDDGG------------------IKCVKNVTIHSS--AILSI--NAGDHWLGIGAA 1108 (1178)
Q Consensus 1051 ~l~~spdg~~L~sgs~Dg~I~iwd~~~~~------------------~~~~~~~~~h~~--~i~~i--s~dg~~Lasgs~ 1108 (1178)
+++|+|++++|++++.||.|++||+.++. ...+..+.+|.. .|.++ ++++++|++|+.
T Consensus 335 ~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 414 (425)
T 1r5m_A 335 AGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYS 414 (425)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEES
T ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEec
Confidence 99999999999999999999999998763 016778888866 77666 799999999999
Q ss_pred CCcEEEEEcC
Q 001042 1109 DNSMSLFHRP 1118 (1178)
Q Consensus 1109 Dg~I~iwd~~ 1118 (1178)
||.|++|+++
T Consensus 415 dg~i~iw~~~ 424 (425)
T 1r5m_A 415 LQEGSVVAIP 424 (425)
T ss_dssp SSCCEEEECC
T ss_pred CceEEEEeec
Confidence 9999999985
No 26
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=4e-35 Score=333.06 Aligned_cols=286 Identities=16% Similarity=0.304 Sum_probs=254.4
Q ss_pred eeeEeecccccceEE--EecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEe
Q 001042 874 ELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWD 950 (1178)
Q Consensus 874 ~~~~~l~~h~~~V~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd 950 (1178)
....++.+|...|.+ |+|+++++++|+.||+|++||+.+++.+..+..|...|.+++|+ +++.+++|+.|++|++||
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence 445788999999996 58999999999999999999999999999999999999999999 788999999999999999
Q ss_pred CCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-ceEEEEecCCccEEEEEEcC---CEEEEEeCCC
Q 001042 951 VRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAG-RQMHKFLGHTKWIRSIRMDR---DTVITGSDDW 1026 (1178)
Q Consensus 951 ~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~-~~~~~~~~~~~~v~~l~~~~---~~l~sgs~dg 1026 (1178)
+.+++.+..+.+|...|.+++|+|+++++++|+.||.|++||++++ .....+.+|...|.+++|++ ..+++|+.||
T Consensus 84 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~ 163 (304)
T 2ynn_A 84 YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR 163 (304)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTS
T ss_pred CCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCC
Confidence 9999999999999999999999999999999999999999999987 45567889999999999965 4899999999
Q ss_pred cEEEEEcCCCeeeeEec-cCCCcEEEEEEec--CCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE--ecCCC
Q 001042 1027 TARMWSISRGTCDAVLA-CHAGPVQCVEYSS--SDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI--NAGDH 1101 (1178)
Q Consensus 1027 ~I~iwd~~~~~~~~~~~-~h~~~I~~l~~sp--dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~dg~ 1101 (1178)
+|++||++++.....+. +|...+..+.|+| ++.+|++|+.||+|++||+.++ .++..+.+|...|.++ +|++.
T Consensus 164 ~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~--~~~~~~~~h~~~v~~~~~~p~~~ 241 (304)
T 2ynn_A 164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK--SCVATLEGHMSNVSFAVFHPTLP 241 (304)
T ss_dssp EEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT--EEEEEEECCSSCEEEEEECSSSS
T ss_pred eEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC--ccceeeCCCCCCEEEEEECCCCC
Confidence 99999998887766654 5667899999987 7789999999999999999998 7888999999998765 79999
Q ss_pred EEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCC--EEEEEeCCCcEEEEECCCC
Q 001042 1102 WLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERK--RICSGGRNGLLRLWEATIN 1177 (1178)
Q Consensus 1102 ~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~--~Las~s~Dg~V~IWdv~tg 1177 (1178)
+|++|+.||+|++||..+. ++...+..|...+.+++|+|++. ++|+|+.| .+.+|++.+.
T Consensus 242 ~l~s~s~Dg~i~iWd~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~-g~~~~~~~~~ 303 (304)
T 2ynn_A 242 IIISGSEDGTLKIWNSSTY---------------KVEKTLNVGLERSWCIATHPTGRKNYIASGFDN-GFTVLSLGND 303 (304)
T ss_dssp EEEEEETTSCEEEEETTTC---------------CEEEEECCSSSSEEEEEECTTCGGGCEEEEETT-EEEEEECC--
T ss_pred EEEEEcCCCeEEEEECCCC---------------ceeeeccCCCccEEEEEECCCCCceEEEEecCC-ceEEEEeccC
Confidence 9999999999999998743 56667778889999999999885 57777655 5778887653
No 27
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3.5e-36 Score=389.09 Aligned_cols=381 Identities=17% Similarity=0.261 Sum_probs=315.7
Q ss_pred cccccCCcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeecc
Q 001042 762 AEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKR 839 (1178)
Q Consensus 762 ~~~~gh~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~ 839 (1178)
....+|...|.+++|||||+++|+++.+ |++||+.++. .+..+.+|.++|++++|+
T Consensus 7 ~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~-------------------~~~~~~~~~~~v~~~~~s--- 64 (814)
T 3mkq_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV-------------------EVRSIQVTETPVRAGKFI--- 64 (814)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-------------------EEEEEECCSSCEEEEEEE---
T ss_pred eeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCc-------------------eEEEEecCCCcEEEEEEe---
Confidence 3457899999999999999999999887 9999998877 788899999999999998
Q ss_pred ceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEE--EecCCCEEEEEeCCCcEEEEECCCC-cEE
Q 001042 840 EVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTS-QLL 916 (1178)
Q Consensus 840 ~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~--~s~d~~~l~sgs~dg~I~iwd~~t~-~~~ 916 (1178)
|++++|++|+.||.|++||+. .......+.+|...|.+ ++++++++++++.||.|++||+.++ ...
T Consensus 65 ---------~~~~~l~~~~~dg~i~vw~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~ 133 (814)
T 3mkq_A 65 ---------ARKNWIIVGSDDFRIRVFNYN--TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE 133 (814)
T ss_dssp ---------GGGTEEEEEETTSEEEEEETT--TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEE
T ss_pred ---------CCCCEEEEEeCCCeEEEEECC--CCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEE
Confidence 899999999999999999976 55667788999999985 5899999999999999999999987 677
Q ss_pred EEecCCCCceEEEEEeC--CCeEEEEeCCCeEEEEeCCCCeEEEEecCCC-CCEEEEEEeC--CCCEEEEEeCCCeEEEE
Q 001042 917 EELKGHDAQVSCVRMLS--GERVLTASHDGTVKMWDVRTDTCVATVGRCS-SAVLCMEYDD--STGILAAGGRDAVANIW 991 (1178)
Q Consensus 917 ~~l~~h~~~V~~l~~~~--~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~-~~I~~l~~sp--~~~~l~sgs~dg~I~lw 991 (1178)
..+.+|...|.+++|++ +..+++++.||+|++||+.++.....+..+. ..+.+++|+| ++..+++|+.||.|++|
T Consensus 134 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~ 213 (814)
T 3mkq_A 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213 (814)
T ss_dssp EEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEE
T ss_pred EEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 88899999999999995 6789999999999999998887766665544 8899999999 99999999999999999
Q ss_pred ECCCCceEEEEecCCccEEEEEEcC--CEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCE--EEEEeCC
Q 001042 992 DIRAGRQMHKFLGHTKWIRSIRMDR--DTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRG--IITGSSD 1067 (1178)
Q Consensus 992 D~~~~~~~~~~~~~~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~--L~sgs~D 1067 (1178)
|+++++.+..+.+|...|.+++|++ +.+++++.||.|++||+.+++....+..|...+.+++|+|+|.. ++++ .+
T Consensus 214 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~ 292 (814)
T 3mkq_A 214 DYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG-FD 292 (814)
T ss_dssp ETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEE-ET
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEE-eC
Confidence 9999999999999999999999964 48999999999999999999999999999999999999999873 5554 57
Q ss_pred CcEEEEECCCCceE--------EEE---------------------------------EecccCC--cEEEEecCCCEEE
Q 001042 1068 GLLRFWENDDGGIK--------CVK---------------------------------NVTIHSS--AILSINAGDHWLG 1104 (1178)
Q Consensus 1068 g~I~iwd~~~~~~~--------~~~---------------------------------~~~~h~~--~i~~is~dg~~La 1104 (1178)
+.+.+|++..+... .+. ....+.. ...+++|+|++++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la 372 (814)
T 3mkq_A 293 NGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVT 372 (814)
T ss_dssp TEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEE
T ss_pred CCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEE
Confidence 77889987653211 111 1112222 2356689999999
Q ss_pred EEeCCCcEEEEEcCCCcc--------ccccCCCCCcc------ceeEeeccCCCcccEEEEEEcCCC---CEEEEEeCCC
Q 001042 1105 IGAADNSMSLFHRPQERL--------GGFSGTGSKMS------GWQLYRTPQKTVAVVRCIASDLER---KRICSGGRNG 1167 (1178)
Q Consensus 1105 sgs~Dg~I~iwd~~~~~~--------~~~~~~g~~~~------~~~~~~~~~~h~~~V~~lafspdg---~~Las~s~Dg 1167 (1178)
+++ |+.+.+|++..... ..+.++|..+. ...+...+.+|...+.+++|+||| ++|++++.||
T Consensus 373 ~~~-~~~~~i~~~~~~~~~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~ 451 (814)
T 3mkq_A 373 VVG-DGEYVIYTALAWRNKAFGKCQDFVWGPDSNSYALIDETGQIKYYKNFKEVTSWSVPMHSAIDRLFSGALLGVKSDG 451 (814)
T ss_dssp EEE-TTEEEEEETTTTEEEEEEECSEEEECTTSSCEEEECTTCCEEEEETTEECTTCCCCCSSCCCEEECSSSEEEEETT
T ss_pred Eec-CCEEEEEECccccccCCCceEEEEEeCCCCeEEEEeCCCcEEEEECCCCccceEEcCCcCccceecceEEEEecCC
Confidence 998 89999999764322 12222332211 123345566787888888999998 6788888899
Q ss_pred cEEEEECCCC
Q 001042 1168 LLRLWEATIN 1177 (1178)
Q Consensus 1168 ~V~IWdv~tg 1177 (1178)
.|++||+.+|
T Consensus 452 ~v~~~d~~~~ 461 (814)
T 3mkq_A 452 FVYFFDWDNG 461 (814)
T ss_dssp EEEEECTTTC
T ss_pred EEEEEECCcC
Confidence 9999998876
No 28
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.6e-35 Score=337.18 Aligned_cols=293 Identities=21% Similarity=0.429 Sum_probs=249.7
Q ss_pred ceeeEeecccccceEEE--ecC-CCEEEEEeCCCcEEEEECCC-----CcEEEEecCCCCceEEEEEe-CCCeEEEEeCC
Q 001042 873 SELRATLKGHTRTVRAI--NSD-RGKVVSGSDDQSVLVWDKQT-----SQLLEELKGHDAQVSCVRML-SGERVLTASHD 943 (1178)
Q Consensus 873 ~~~~~~l~~h~~~V~~~--s~d-~~~l~sgs~dg~I~iwd~~t-----~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~d 943 (1178)
..+..++.+|.+.|.++ +++ +++|++|+.|++|++||+.+ +..+..+.+|...|.+++|+ ++.++++|+.|
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D 86 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWD 86 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCC
Confidence 34557889999999975 665 48999999999999999864 34567889999999999999 78899999999
Q ss_pred CeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEcCC------
Q 001042 944 GTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD------ 1017 (1178)
Q Consensus 944 g~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~------ 1017 (1178)
|+|++||+.+++.+..+.+|...|.+++|+|++.++++|+.||.|++||++ ++.+..+.+|...|.++++.+.
T Consensus 87 ~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 165 (319)
T 3frx_A 87 KTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDD 165 (319)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------
T ss_pred CEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCC
Confidence 999999999999999999999999999999999999999999999999996 5677888899999999999543
Q ss_pred --EEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEE
Q 001042 1018 --TVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILS 1095 (1178)
Q Consensus 1018 --~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~ 1095 (1178)
.+++++.|+.|++||+++++....+.+|...|++++|+|+|++|++|+.||.|++||+.++ ..+..+..+ ..+.+
T Consensus 166 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~-~~v~~ 242 (319)
T 3frx_A 166 SVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK--KAMYTLSAQ-DEVFS 242 (319)
T ss_dssp CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT--EEEEEEECC-SCEEE
T ss_pred ccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--cEEEEecCC-CcEEE
Confidence 7999999999999999999999999999999999999999999999999999999999988 566666544 45655
Q ss_pred E--ecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001042 1096 I--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWE 1173 (1178)
Q Consensus 1096 i--s~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWd 1173 (1178)
+ +|++.++++++.+ .+++|++........... ........|...+.+++|+|||++|++|+.||+|+|||
T Consensus 243 ~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~-------~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd 314 (319)
T 3frx_A 243 LAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRP-------EFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314 (319)
T ss_dssp EEECSSSSEEEEEETT-EEEEEEETTEEEEEEECC-------CCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCc-------cccccccCcCcceeEEEECCCCCEEEEeecCceEEEEE
Confidence 4 8999999988755 599999874322110000 00011234667899999999999999999999999999
Q ss_pred CCCC
Q 001042 1174 ATIN 1177 (1178)
Q Consensus 1174 v~tg 1177 (1178)
+.|+
T Consensus 315 ~~t~ 318 (319)
T 3frx_A 315 VMTA 318 (319)
T ss_dssp EEEC
T ss_pred Eeec
Confidence 9875
No 29
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=6.4e-36 Score=345.73 Aligned_cols=292 Identities=13% Similarity=0.216 Sum_probs=235.1
Q ss_pred cccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEEeCCC
Q 001042 824 RGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQ 903 (1178)
Q Consensus 824 ~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sgs~dg 903 (1178)
..|...|.+++|+ |||++|++++ |+++++||.. . ..+..... .+.
T Consensus 27 ~~~~~~v~~~~fs------------~dG~~l~~~s-d~~~r~Wd~~---~---~~~~~~~~-----~~~----------- 71 (344)
T 4gqb_B 27 ACMERQLEAARYR------------SDGALLLGAS-SLSGRCWAGS---L---WLFKDPCA-----APN----------- 71 (344)
T ss_dssp SSCCSEEEEEEEC------------TTSCEEEEEE-CCSSSCCCEE---E---EEESSGGG-----TTC-----------
T ss_pred ccccCCEEEEEEC------------CCCCEEEEEe-CCceEEeece---e---eeeccccc-----cCC-----------
Confidence 3577779999997 8999998887 7788999721 0 00100000 000
Q ss_pred cEEEEECCCCcEEEEecCCCCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEE----ecCCCCCEEEEEEeCCCCEE
Q 001042 904 SVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVAT----VGRCSSAVLCMEYDDSTGIL 979 (1178)
Q Consensus 904 ~I~iwd~~t~~~~~~l~~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~----~~~~~~~I~~l~~sp~~~~l 979 (1178)
.+.. .....|...|.+++|++++.+++|+.||+|++||+.+++.... ..+|...|++++|+|+|++|
T Consensus 72 --------~~~~-~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l 142 (344)
T 4gqb_B 72 --------EGFC-SAGVQTEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQA 142 (344)
T ss_dssp --------GGGC-SEEEEESSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEE
T ss_pred --------ccee-eeeeccCCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEE
Confidence 0011 1112256779999999888999999999999999998875433 34799999999999999999
Q ss_pred EEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEcC---CEEEEEeCCCcEEEEEcCCCeeeeEec--cCCCcEEEEEE
Q 001042 980 AAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR---DTVITGSDDWTARMWSISRGTCDAVLA--CHAGPVQCVEY 1054 (1178)
Q Consensus 980 ~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~--~h~~~I~~l~~ 1054 (1178)
++|+.||.|++||+++++.+..+.+|.+.|.+++|++ ..+++|+.||+|++||+++++....+. .|...+++++|
T Consensus 143 ~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 222 (344)
T 4gqb_B 143 VSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAW 222 (344)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeee
Confidence 9999999999999999999999999999999999954 378999999999999999999888775 45667999999
Q ss_pred ecC-CCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE--ecCC-CEEEEEeCCCcEEEEEcCCCccccccCCCC
Q 001042 1055 SSS-DRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI--NAGD-HWLGIGAADNSMSLFHRPQERLGGFSGTGS 1130 (1178)
Q Consensus 1055 spd-g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~dg-~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~ 1130 (1178)
+|+ ++++++|+.||.|++||++++ .++..+.+|...|.++ +|++ ++||+|+.|++|++||+.++
T Consensus 223 ~p~~~~~l~sg~~dg~v~~wd~~~~--~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~---------- 290 (344)
T 4gqb_B 223 HPQQSEVFVFGDENGTVSLVDTKST--SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS---------- 290 (344)
T ss_dssp CSSCTTEEEEEETTSEEEEEESCC----CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC----------
T ss_pred cCCCCcceEEeccCCcEEEEECCCC--cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC----------
Confidence 995 568899999999999999988 6778889999999776 6887 58999999999999998743
Q ss_pred CccceeEeeccCCCcccEEEEEEcCCCC-EEEEEeCCCcEEEEECCCC
Q 001042 1131 KMSGWQLYRTPQKTVAVVRCIASDLERK-RICSGGRNGLLRLWEATIN 1177 (1178)
Q Consensus 1131 ~~~~~~~~~~~~~h~~~V~~lafspdg~-~Las~s~Dg~V~IWdv~tg 1177 (1178)
++. ...+|.+.|++++|+|+++ +|+|||.||+|++|++.+.
T Consensus 291 -----~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 291 -----ELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp -----EEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred -----cEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 332 3568999999999999986 6789999999999999764
No 30
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.4e-35 Score=342.79 Aligned_cols=292 Identities=15% Similarity=0.178 Sum_probs=238.5
Q ss_pred ccCCcceEEEEecCCCCcccccccc-eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceec
Q 001042 765 SGIGRSWVQSMFSREASSRSHSFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWD 843 (1178)
Q Consensus 765 ~gh~~~i~~~aFSpdg~~las~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~ 843 (1178)
..|...+.+++|||||+++++++++ +|+||......... ..............|...|++++|+
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~--------~~~~~~~~~~~~~~~~~~v~~~~~s------- 91 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDP--------CAAPNEGFCSAGVQTEAGVADLTWV------- 91 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSG--------GGTTCGGGCSEEEEESSCEEEEEEE-------
T ss_pred ccccCCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccc--------cccCCcceeeeeeccCCCEEEEEEe-------
Confidence 4566778999999999999998876 99998543221000 0001111223344577889999998
Q ss_pred cccccCCCCEEEEEeCCCcEEEEcCCCCCce--eeEeecccccceEE--EecCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 001042 844 LVGDREDAGFFISGSTDCLVKIWDPSLRGSE--LRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLLEEL 919 (1178)
Q Consensus 844 ~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~--~~~~l~~h~~~V~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l 919 (1178)
+| +.+++|+.||+|+|||+...... ......+|...|.+ +++++++|++|+.||+|++||+.+++.+..+
T Consensus 92 -----~d-~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~ 165 (344)
T 4gqb_B 92 -----GE-RGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSY 165 (344)
T ss_dssp -----TT-TEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred -----CC-CeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 66 57889999999999998743322 22345689999986 5899999999999999999999999999999
Q ss_pred cCCCCceEEEEEe-CC-CeEEEEeCCCeEEEEeCCCCeEEEEec--CCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECC
Q 001042 920 KGHDAQVSCVRML-SG-ERVLTASHDGTVKMWDVRTDTCVATVG--RCSSAVLCMEYDDS-TGILAAGGRDAVANIWDIR 994 (1178)
Q Consensus 920 ~~h~~~V~~l~~~-~~-~~l~sgs~dg~V~iwd~~~~~~~~~~~--~~~~~I~~l~~sp~-~~~l~sgs~dg~I~lwD~~ 994 (1178)
.+|...|.+++|+ ++ ..+++|+.||+|++||+++++....+. .+...+.+++|+|+ ++++++|+.||.|++||++
T Consensus 166 ~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~ 245 (344)
T 4gqb_B 166 RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTK 245 (344)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESC
T ss_pred cCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECC
Confidence 9999999999998 44 578999999999999999999888764 34567999999994 5688999999999999999
Q ss_pred CCceEEEEecCCccEEEEEEcC---CEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCC-EEEEEeCCCcE
Q 001042 995 AGRQMHKFLGHTKWIRSIRMDR---DTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDR-GIITGSSDGLL 1070 (1178)
Q Consensus 995 ~~~~~~~~~~~~~~v~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~-~L~sgs~Dg~I 1070 (1178)
+++++..+.+|...|++++|++ .+|++|+.||+|++||+++++.. .+.+|.+.|++++|+|+++ +|++||.||+|
T Consensus 246 ~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v 324 (344)
T 4gqb_B 246 STSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQV 324 (344)
T ss_dssp C--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCE
T ss_pred CCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeE
Confidence 9999999999999999999964 37999999999999999988765 5678999999999999986 56789999999
Q ss_pred EEEECCCC
Q 001042 1071 RFWENDDG 1078 (1178)
Q Consensus 1071 ~iwd~~~~ 1078 (1178)
++|++.+.
T Consensus 325 ~~w~v~~~ 332 (344)
T 4gqb_B 325 VHHVVPTE 332 (344)
T ss_dssp EEEECCC-
T ss_pred EEEECCCC
Confidence 99999875
No 31
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.2e-36 Score=353.69 Aligned_cols=285 Identities=24% Similarity=0.397 Sum_probs=251.6
Q ss_pred ceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceE--EEecCCCEE
Q 001042 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKV 896 (1178)
Q Consensus 819 ~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~--~~s~d~~~l 896 (1178)
+.+++.||.+.|++++|+ |++++|+||+.||+|++||+. .......+.+|...|. +++|+++++
T Consensus 58 ~~~~l~gH~~~V~~~~~s------------p~~~~l~s~s~D~~v~iWd~~--~~~~~~~~~~h~~~v~~~~~s~~g~~l 123 (380)
T 3iz6_a 58 CCRTLQGHSGKVYSLDWT------------PEKNWIVSASQDGRLIVWNAL--TSQKTHAIKLHCPWVMECAFAPNGQSV 123 (380)
T ss_dssp EEEEECCCSSCEEEEEEC------------TTSSCEEEEETTSEEEEEETT--TTEEEEEEECCCTTCCCCEECTTSSEE
T ss_pred EeecccccccEEEEEEEc------------CCCCEEEEEeCCCeEEEEECC--CCccceEEecCCCCEEEEEECCCCCEE
Confidence 778999999999999998 899999999999999999976 4566678889998887 579999999
Q ss_pred EEEeCCCcEEEEECCCCc-------EEEEecCCCCceEEEEEeC--CCeEEEEeCCCeEEEEeCCCCeEEEEe-----cC
Q 001042 897 VSGSDDQSVLVWDKQTSQ-------LLEELKGHDAQVSCVRMLS--GERVLTASHDGTVKMWDVRTDTCVATV-----GR 962 (1178)
Q Consensus 897 ~sgs~dg~I~iwd~~t~~-------~~~~l~~h~~~V~~l~~~~--~~~l~sgs~dg~V~iwd~~~~~~~~~~-----~~ 962 (1178)
++|+.|+.+++||+.+.. ....+.+|.+.|.++.|.+ +..+++|+.|++|++||+.+++.+..+ .+
T Consensus 124 as~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~ 203 (380)
T 3iz6_a 124 ACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSG 203 (380)
T ss_dssp EECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSS
T ss_pred EEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCC
Confidence 999999999999987532 3456789999999999983 567999999999999999999998877 56
Q ss_pred CCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECC-CCceEEEEecCCccEEEEEEcC--CEEEEEeCCCcEEEEEcCCCee
Q 001042 963 CSSAVLCMEYDD-STGILAAGGRDAVANIWDIR-AGRQMHKFLGHTKWIRSIRMDR--DTVITGSDDWTARMWSISRGTC 1038 (1178)
Q Consensus 963 ~~~~I~~l~~sp-~~~~l~sgs~dg~I~lwD~~-~~~~~~~~~~~~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~ 1038 (1178)
|...|.++++++ +++++++|+.||.|++||++ +++.+..+.+|.+.|.+++|++ .++++|+.||+|++||+++++.
T Consensus 204 h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~ 283 (380)
T 3iz6_a 204 HTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQ 283 (380)
T ss_dssp CCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEE
T ss_pred CccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcE
Confidence 888999999987 88999999999999999998 4577888999999999999954 5999999999999999999999
Q ss_pred eeEeccCC-------CcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEe----cccCCcEEEE--ecCCCEEEE
Q 001042 1039 DAVLACHA-------GPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNV----TIHSSAILSI--NAGDHWLGI 1105 (1178)
Q Consensus 1039 ~~~~~~h~-------~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~----~~h~~~i~~i--s~dg~~Las 1105 (1178)
+..+..+. ..|++++|+|+|+++++|+.||.|++||..++ .....+ .+|...|.++ +|+|.+|++
T Consensus 284 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~--~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s 361 (380)
T 3iz6_a 284 LQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA--EMVLNLGTLQNSHEGRISCLGLSSDGSALCT 361 (380)
T ss_dssp EEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTC--CEEEEECCSCSSCCCCCCEEEECSSSSEEEE
T ss_pred EEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCC--ceEEEEecccCCCCCceEEEEECCCCCEEEE
Confidence 88876543 24899999999999999999999999999888 444444 5788888665 899999999
Q ss_pred EeCCCcEEEEEcCC
Q 001042 1106 GAADNSMSLFHRPQ 1119 (1178)
Q Consensus 1106 gs~Dg~I~iwd~~~ 1119 (1178)
|+.||+|++|++..
T Consensus 362 gs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 362 GSWDKNLKIWAFSG 375 (380)
T ss_dssp ECTTSCEEEEECCS
T ss_pred eeCCCCEEEEecCC
Confidence 99999999999874
No 32
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=7.7e-35 Score=331.44 Aligned_cols=287 Identities=24% Similarity=0.510 Sum_probs=259.7
Q ss_pred CceeeEeecccccceEE--EecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEE
Q 001042 872 GSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKM 948 (1178)
Q Consensus 872 ~~~~~~~l~~h~~~V~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~i 948 (1178)
.......+.+|...|.+ ++|+++++++|+.||.|++|+..+++....+.+|...|.+++|+ +++.+++|+.||.|++
T Consensus 12 ~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~v 91 (312)
T 4ery_A 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKI 91 (312)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEE
Confidence 34566788999999986 58999999999999999999999999999999999999999999 7889999999999999
Q ss_pred EeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEc--CCEEEEEeCCC
Q 001042 949 WDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMD--RDTVITGSDDW 1026 (1178)
Q Consensus 949 wd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sgs~dg 1026 (1178)
||+++++++..+..|...|.+++|+|+++++++|+.||.|++||+++++.+..+..|...|.+++|+ ++.+++++.||
T Consensus 92 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 171 (312)
T 4ery_A 92 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 171 (312)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999995 45999999999
Q ss_pred cEEEEEcCCCeeeeEec-cCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcE----EEE-ecCC
Q 001042 1027 TARMWSISRGTCDAVLA-CHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAI----LSI-NAGD 1100 (1178)
Q Consensus 1027 ~I~iwd~~~~~~~~~~~-~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i----~~i-s~dg 1100 (1178)
.|++||+++++.+..+. .+...+.+++|+|+++++++++.||.|++||+.++ .....+.+|.... ..+ .+++
T Consensus 172 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (312)
T 4ery_A 172 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG--KCLKTYTGHKNEKYCIFANFSVTGG 249 (312)
T ss_dssp CEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT--EEEEEECSSCCSSSCCCEEEECSSS
T ss_pred cEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC--cEEEEEEecCCceEEEEEEEEeCCC
Confidence 99999999998877764 46678999999999999999999999999999998 6777777776543 223 3678
Q ss_pred CEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEe--CCCcEEEEECC
Q 001042 1101 HWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGG--RNGLLRLWEAT 1175 (1178)
Q Consensus 1101 ~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s--~Dg~V~IWdv~ 1175 (1178)
.++++|+.||.|++||+.++ +....+.+|...|.+++|+|++++|++++ .||+|++|+.+
T Consensus 250 ~~l~sg~~dg~i~vwd~~~~---------------~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 250 KWIVSGSEDNLVYIWNLQTK---------------EIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CEEEECCTTSCEEEEETTTC---------------CEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred cEEEEECCCCEEEEEECCCc---------------hhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 99999999999999999743 56677789999999999999999999997 69999999975
No 33
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=9.3e-35 Score=336.44 Aligned_cols=300 Identities=20% Similarity=0.322 Sum_probs=250.3
Q ss_pred CceeeEeeccccc-ceE--EEecCCCEEEEEeCCCcEEEEECCCCcEEE---EecCCCCceEEEEEe-CCCeEEEEeCCC
Q 001042 872 GSELRATLKGHTR-TVR--AINSDRGKVVSGSDDQSVLVWDKQTSQLLE---ELKGHDAQVSCVRML-SGERVLTASHDG 944 (1178)
Q Consensus 872 ~~~~~~~l~~h~~-~V~--~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~---~l~~h~~~V~~l~~~-~~~~l~sgs~dg 944 (1178)
.......+.+|.. .|. +++|+|++|++|+.|++|++||+.+++... ...+|...|.+++|+ ++++|++|+.|+
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~ 83 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA 83 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC
Confidence 3456678889987 666 569999999999999999999998876432 236899999999999 788999999999
Q ss_pred eEEEEeCCCC--eEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc---eEEEEecCCccEEEEEEcC--C
Q 001042 945 TVKMWDVRTD--TCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGR---QMHKFLGHTKWIRSIRMDR--D 1017 (1178)
Q Consensus 945 ~V~iwd~~~~--~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~---~~~~~~~~~~~v~~l~~~~--~ 1017 (1178)
++++||..++ +++..+.+|...|.+++|+|++++|++|+.|+.|++||++++. .+..+.+|...|.+++|++ +
T Consensus 84 ~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~ 163 (345)
T 3fm0_A 84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE 163 (345)
T ss_dssp CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS
T ss_pred cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC
Confidence 9999999876 4677888999999999999999999999999999999998764 4567788999999999954 5
Q ss_pred EEEEEeCCCcEEEEEcCCCe--eeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCC-------------ceEE
Q 001042 1018 TVITGSDDWTARMWSISRGT--CDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDG-------------GIKC 1082 (1178)
Q Consensus 1018 ~l~sgs~dg~I~iwd~~~~~--~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~-------------~~~~ 1082 (1178)
++++|+.|+.|++||.++++ +...+.+|.+.|++++|+|+|++|++|+.||+|++||.... ...+
T Consensus 164 ~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~ 243 (345)
T 3fm0_A 164 LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKC 243 (345)
T ss_dssp CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEE
T ss_pred EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccce
Confidence 99999999999999998875 45778899999999999999999999999999999996322 1234
Q ss_pred EEEecc-cCCcEEEE--ecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeE-eeccCCCcccEEEEEEcCCC-
Q 001042 1083 VKNVTI-HSSAILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQL-YRTPQKTVAVVRCIASDLER- 1157 (1178)
Q Consensus 1083 ~~~~~~-h~~~i~~i--s~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~-~~~~~~h~~~V~~lafspdg- 1157 (1178)
+..+.+ |...|.++ ++++..+++++.|+.|++|+...... .....+.. .....+|...|++++|+|++
T Consensus 244 ~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~-------~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~ 316 (345)
T 3fm0_A 244 ICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSD-------PQQPTFSLTAHLHQAHSQDVNCVAWNPKEP 316 (345)
T ss_dssp EEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSC-------TTSCCEEEEEEETTSSSSCEEEEEECSSST
T ss_pred eEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCC-------cceeeEEEEeeecccccCcEeEeEEeCCCc
Confidence 555555 78888776 78999999999999999999874311 11111122 23457899999999999998
Q ss_pred CEEEEEeCCCcEEEEECCCCC
Q 001042 1158 KRICSGGRNGLLRLWEATINI 1178 (1178)
Q Consensus 1158 ~~Las~s~Dg~V~IWdv~tg~ 1178 (1178)
.+||||+.||+|++|++.+++
T Consensus 317 ~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 317 GLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp TEEEEEETTSCEEEEEECC--
T ss_pred eEEEEcCCCCcEEEEEecCCC
Confidence 599999999999999998753
No 34
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4.1e-36 Score=352.76 Aligned_cols=286 Identities=20% Similarity=0.341 Sum_probs=254.1
Q ss_pred cccccCCcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeecc
Q 001042 762 AEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKR 839 (1178)
Q Consensus 762 ~~~~gh~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~ 839 (1178)
..+.||...|.+++|||||+++++|+.| |++||..+++ ....+.+|...|.+++|+
T Consensus 60 ~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~-------------------~~~~~~~h~~~v~~~~~s--- 117 (380)
T 3iz6_a 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQ-------------------KTHAIKLHCPWVMECAFA--- 117 (380)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE-------------------EEEEEECCCTTCCCCEEC---
T ss_pred ecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-------------------cceEEecCCCCEEEEEEC---
Confidence 3467999999999999999999999999 9999998877 688899999999999998
Q ss_pred ceeccccccCCCCEEEEEeCCCcEEEEcCCCC-----CceeeEeecccccceEEE--ecC-CCEEEEEeCCCcEEEEECC
Q 001042 840 EVWDLVGDREDAGFFISGSTDCLVKIWDPSLR-----GSELRATLKGHTRTVRAI--NSD-RGKVVSGSDDQSVLVWDKQ 911 (1178)
Q Consensus 840 ~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~-----~~~~~~~l~~h~~~V~~~--s~d-~~~l~sgs~dg~I~iwd~~ 911 (1178)
|++++|++|+.|+.|++||+... .......+.+|...+.++ .++ +..+++|+.|++|++||+.
T Consensus 118 ---------~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~ 188 (380)
T 3iz6_a 118 ---------PNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVT 188 (380)
T ss_dssp ---------TTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTT
T ss_pred ---------CCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcC
Confidence 89999999999999999998632 123446788999988754 555 5679999999999999999
Q ss_pred CCcEEEEe-----cCCCCceEEEEEe--CCCeEEEEeCCCeEEEEeCC-CCeEEEEecCCCCCEEEEEEeCCCCEEEEEe
Q 001042 912 TSQLLEEL-----KGHDAQVSCVRML--SGERVLTASHDGTVKMWDVR-TDTCVATVGRCSSAVLCMEYDDSTGILAAGG 983 (1178)
Q Consensus 912 t~~~~~~l-----~~h~~~V~~l~~~--~~~~l~sgs~dg~V~iwd~~-~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs 983 (1178)
+++.+..+ .+|...|.+++++ +++.+++|+.||+|++||++ +++.+..+.+|...|.+++|+|+++++++|+
T Consensus 189 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s 268 (380)
T 3iz6_a 189 TGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGS 268 (380)
T ss_dssp TCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEEC
T ss_pred CCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEc
Confidence 99998877 6799999999997 57899999999999999998 4577888899999999999999999999999
Q ss_pred CCCeEEEEECCCCceEEEEecCCc-------cEEEEEEc--CCEEEEEeCCCcEEEEEcCCCeeeeEe----ccCCCcEE
Q 001042 984 RDAVANIWDIRAGRQMHKFLGHTK-------WIRSIRMD--RDTVITGSDDWTARMWSISRGTCDAVL----ACHAGPVQ 1050 (1178)
Q Consensus 984 ~dg~I~lwD~~~~~~~~~~~~~~~-------~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~----~~h~~~I~ 1050 (1178)
.||.|++||+++++.+..+..+.. .|.+++|+ +.++++|+.||.|++||+.+++....+ .+|.+.|+
T Consensus 269 ~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~ 348 (380)
T 3iz6_a 269 DDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRIS 348 (380)
T ss_dssp SSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCC
T ss_pred CCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceE
Confidence 999999999999999888765432 47889984 569999999999999999999888777 67999999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEECCCC
Q 001042 1051 CVEYSSSDRGIITGSSDGLLRFWENDDG 1078 (1178)
Q Consensus 1051 ~l~~spdg~~L~sgs~Dg~I~iwd~~~~ 1078 (1178)
+++|+|+|++|++|+.||+|++|++...
T Consensus 349 ~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 349 CLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp EEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred EEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 9999999999999999999999998765
No 35
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=5.8e-35 Score=332.50 Aligned_cols=282 Identities=24% Similarity=0.433 Sum_probs=255.0
Q ss_pred cccccCCcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeecc
Q 001042 762 AEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKR 839 (1178)
Q Consensus 762 ~~~~gh~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~ 839 (1178)
..+.||...|.+++|+|||+++++++.| |++|+..++. ....+.+|...|.+++|+
T Consensus 17 ~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~-------------------~~~~~~~h~~~v~~~~~~--- 74 (312)
T 4ery_A 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-------------------FEKTISGHKLGISDVAWS--- 74 (312)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-------------------EEEEECCCSSCEEEEEEC---
T ss_pred EEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc-------------------cchhhccCCCceEEEEEc---
Confidence 4457999999999999999999999988 9999998766 678899999999999998
Q ss_pred ceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEE--EecCCCEEEEEeCCCcEEEEECCCCcEEE
Q 001042 840 EVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLLE 917 (1178)
Q Consensus 840 ~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~ 917 (1178)
|++++|++|+.||.|++||+. .......+.+|...|.+ ++++++++++|+.||.|++||+.+++.+.
T Consensus 75 ---------~~~~~l~s~~~d~~i~vwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~ 143 (312)
T 4ery_A 75 ---------SDSNLLVSASDDKTLKIWDVS--SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 143 (312)
T ss_dssp ---------TTSSEEEEEETTSEEEEEETT--TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred ---------CCCCEEEEECCCCEEEEEECC--CCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEE
Confidence 899999999999999999976 45667888999999885 58999999999999999999999999999
Q ss_pred EecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEec-CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Q 001042 918 ELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVG-RCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRA 995 (1178)
Q Consensus 918 ~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~-~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~ 995 (1178)
.+..|...|.+++|+ ++..+++|+.||.|++||+++++.+..+. .+...+.+++|+|+++++++++.||.|++||+++
T Consensus 144 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 223 (312)
T 4ery_A 144 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 223 (312)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTT
T ss_pred EecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 999999999999999 78899999999999999999998887764 4567899999999999999999999999999999
Q ss_pred CceEEEEecCCccEEEE--EE---cCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEe--CCC
Q 001042 996 GRQMHKFLGHTKWIRSI--RM---DRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGS--SDG 1068 (1178)
Q Consensus 996 ~~~~~~~~~~~~~v~~l--~~---~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs--~Dg 1068 (1178)
++.+..+.+|.....++ .+ ++.++++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|+++++++++ .|+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~ 303 (312)
T 4ery_A 224 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK 303 (312)
T ss_dssp TEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTC
T ss_pred CcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCc
Confidence 99999998887643322 22 456899999999999999999999999999999999999999999999987 699
Q ss_pred cEEEEECC
Q 001042 1069 LLRFWEND 1076 (1178)
Q Consensus 1069 ~I~iwd~~ 1076 (1178)
+|++|+.+
T Consensus 304 ~i~~W~~d 311 (312)
T 4ery_A 304 TIKLWKSD 311 (312)
T ss_dssp CEEEEECC
T ss_pred cEEEecCC
Confidence 99999864
No 36
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.3e-35 Score=340.17 Aligned_cols=289 Identities=21% Similarity=0.317 Sum_probs=243.8
Q ss_pred ccccCCc-ceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeecc
Q 001042 763 EASGIGR-SWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKR 839 (1178)
Q Consensus 763 ~~~gh~~-~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~ 839 (1178)
.+.+|.. .+.+++|||||++||+|+.| |+|||++++.... ......+|.+.|++++|+
T Consensus 10 ~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~----------------~~~~~~~h~~~v~~~~~s--- 70 (345)
T 3fm0_A 10 RVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWIC----------------KSVLSEGHQRTVRKVAWS--- 70 (345)
T ss_dssp EECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEE----------------EEEECSSCSSCEEEEEEC---
T ss_pred eecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCccee----------------eeeeccccCCcEEEEEEC---
Confidence 4567877 78899999999999999998 9999998654100 122347899999999998
Q ss_pred ceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEE--EecCCCEEEEEeCCCcEEEEECCCC---c
Q 001042 840 EVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTS---Q 914 (1178)
Q Consensus 840 ~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~--~s~d~~~l~sgs~dg~I~iwd~~t~---~ 914 (1178)
|++++|++|+.|++|++||+..........+.+|...|.+ ++|++++|++|+.|++|++||+.++ +
T Consensus 71 ---------p~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~ 141 (345)
T 3fm0_A 71 ---------PCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE 141 (345)
T ss_dssp ---------TTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEE
T ss_pred ---------CCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeE
Confidence 8999999999999999999875555667889999999985 5899999999999999999999876 3
Q ss_pred EEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCe--EEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 001042 915 LLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDT--CVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIW 991 (1178)
Q Consensus 915 ~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~--~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lw 991 (1178)
.+..+.+|...|.+++|+ ++..+++|+.||+|++||.++++ +...+.+|...|.+++|+|++++|++|+.||.|++|
T Consensus 142 ~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW 221 (345)
T 3fm0_A 142 CVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221 (345)
T ss_dssp EEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEe
Confidence 466788999999999999 68899999999999999998875 456788999999999999999999999999999999
Q ss_pred ECCCC---------------ceEEEEec-CCccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCee---------eeEecc
Q 001042 992 DIRAG---------------RQMHKFLG-HTKWIRSIRMD--RDTVITGSDDWTARMWSISRGTC---------DAVLAC 1044 (1178)
Q Consensus 992 D~~~~---------------~~~~~~~~-~~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~---------~~~~~~ 1044 (1178)
|.... +++..+.+ |...|.+++|+ +..+++++.|+.|++|+...+.. .....+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~ 301 (345)
T 3fm0_A 222 RQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQA 301 (345)
T ss_dssp EEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTS
T ss_pred ccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeeccc
Confidence 96422 23444544 88899999995 45899999999999999876421 123457
Q ss_pred CCCcEEEEEEecCC-CEEEEEeCCCcEEEEECCCCc
Q 001042 1045 HAGPVQCVEYSSSD-RGIITGSSDGLLRFWENDDGG 1079 (1178)
Q Consensus 1045 h~~~I~~l~~spdg-~~L~sgs~Dg~I~iwd~~~~~ 1079 (1178)
|...|++++|+|++ .+|++|+.||+|++|++.+++
T Consensus 302 h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 302 HSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp SSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred ccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence 99999999999998 499999999999999998873
No 37
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.2e-35 Score=348.83 Aligned_cols=319 Identities=15% Similarity=0.172 Sum_probs=267.0
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceE-EEecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceE
Q 001042 849 EDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR-AINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVS 927 (1178)
Q Consensus 849 ~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~-~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~ 927 (1178)
|++++|++|+.||.|++||+. .......+..|..... .++++++++++|+.||.|++||+.+++....+.+|...|+
T Consensus 66 ~~g~~l~~~~~d~~v~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~ 143 (420)
T 3vl1_A 66 KVGSHLYKARLDGHDFLFNTI--IRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEIT 143 (420)
T ss_dssp EEETTEEEEEETTEEEEEECC--SEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEE
T ss_pred ecCCeEEEEEcCCcEEEEEec--ccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccE
Confidence 899999999999999999976 4444445555533222 4689999999999999999999999999888899999999
Q ss_pred EEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEec--
Q 001042 928 CVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLG-- 1004 (1178)
Q Consensus 928 ~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~-- 1004 (1178)
+++|+ ++..+++|+.||+|++||+.+++.+..+.+|...|.+++|+|+++.+++++.||.|++||+++++.+..+..
T Consensus 144 ~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 223 (420)
T 3vl1_A 144 KLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKE 223 (420)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTT
T ss_pred EEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCC
Confidence 99999 778999999999999999999999999999999999999999999999999999999999999999988875
Q ss_pred -CCccEEEEEE-----------------------cCCEEEEEeCCCcEEEEEcCCCeeeeEec-cCCCcEEEEEEecCCC
Q 001042 1005 -HTKWIRSIRM-----------------------DRDTVITGSDDWTARMWSISRGTCDAVLA-CHAGPVQCVEYSSSDR 1059 (1178)
Q Consensus 1005 -~~~~v~~l~~-----------------------~~~~l~sgs~dg~I~iwd~~~~~~~~~~~-~h~~~I~~l~~spdg~ 1059 (1178)
+...+.++++ +++++++|+.||.|++||+++++....+. .|...|++++|+|+++
T Consensus 224 ~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 303 (420)
T 3vl1_A 224 NPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNA 303 (420)
T ss_dssp BTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCT
T ss_pred CCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCC
Confidence 4556666665 34589999999999999999988777765 5888999999999999
Q ss_pred -EEEEEeCCCcEEEEECCCCceEEEEEecc-cCCcEEEE-ecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCcccee
Q 001042 1060 -GIITGSSDGLLRFWENDDGGIKCVKNVTI-HSSAILSI-NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQ 1136 (1178)
Q Consensus 1060 -~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~-h~~~i~~i-s~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~ 1136 (1178)
++++|+.||.|++||+.+++. .+..+.+ |...+.++ .++++++++|+.||.|++|++..... ........
T Consensus 304 ~~l~~g~~dg~i~vwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~------~~~~~~~~ 376 (420)
T 3vl1_A 304 NYIYAGYENGMLAQWDLRSPEC-PVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPES------ERPAIEFE 376 (420)
T ss_dssp TEEEEEETTSEEEEEETTCTTS-CSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTC------CSCEECTT
T ss_pred CEEEEEeCCCeEEEEEcCCCcC-chhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCC------Cccceecc
Confidence 999999999999999998742 2344444 66677666 67899999999999999999975321 11111111
Q ss_pred EeeccCCCcccEEEEEEcCCCC---EEEEEeCCCcEEEEECCC
Q 001042 1137 LYRTPQKTVAVVRCIASDLERK---RICSGGRNGLLRLWEATI 1176 (1178)
Q Consensus 1137 ~~~~~~~h~~~V~~lafspdg~---~Las~s~Dg~V~IWdv~t 1176 (1178)
......+|...|.+++|+||++ .|++++.+|.+.+|+++.
T Consensus 377 ~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 377 TPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp SCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred CccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 2223457888999999999999 788888899999999875
No 38
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-36 Score=360.70 Aligned_cols=336 Identities=13% Similarity=0.219 Sum_probs=278.0
Q ss_pred cccceEEEEeeeccceeccccccCCCC-EEEEE----------eCCCcEEEEcCCCCCce-eeEeecccccceEE--Eec
Q 001042 826 HAGAITALHCVTKREVWDLVGDREDAG-FFISG----------STDCLVKIWDPSLRGSE-LRATLKGHTRTVRA--INS 891 (1178)
Q Consensus 826 H~~~V~~l~fs~~~~~~~~~~~s~d~~-~Lasg----------s~Dg~I~iWd~~~~~~~-~~~~l~~h~~~V~~--~s~ 891 (1178)
+...|.+++|+ |+++ ++++| +.||.|++||+...... .... ..|...|.+ +++
T Consensus 11 ~~~~v~~~~~s------------p~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~-~~~~~~v~~~~~s~ 77 (416)
T 2pm9_A 11 EFSRTATFAWS------------HDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS-LQVDSKFNDLDWSH 77 (416)
T ss_dssp EEEESCBCCBC------------SSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC-CCCSSCEEEEEECS
T ss_pred hhhhcceEeeC------------CCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE-EecCCceEEEEECC
Confidence 33467777776 8876 99999 89999999998733221 2223 357888885 589
Q ss_pred CCCEEEEEeCCCcEEEEECCC----CcEEEEecCCCCceEEEEEe-C-CCeEEEEeCCCeEEEEeCCCCe------EEEE
Q 001042 892 DRGKVVSGSDDQSVLVWDKQT----SQLLEELKGHDAQVSCVRML-S-GERVLTASHDGTVKMWDVRTDT------CVAT 959 (1178)
Q Consensus 892 d~~~l~sgs~dg~I~iwd~~t----~~~~~~l~~h~~~V~~l~~~-~-~~~l~sgs~dg~V~iwd~~~~~------~~~~ 959 (1178)
++++|++|+.||.|++||+.+ .+.+..+.+|...|.+++|+ + +..+++++.||.|++||+.+++ ....
T Consensus 78 ~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 157 (416)
T 2pm9_A 78 NNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLT 157 (416)
T ss_dssp SSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBC
T ss_pred CCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccc
Confidence 999999999999999999987 45888999999999999999 4 7899999999999999999886 3322
Q ss_pred ---ecCCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCceEEEEecC------CccEEEEEEcC---CEEEEEeCCC
Q 001042 960 ---VGRCSSAVLCMEYDDS-TGILAAGGRDAVANIWDIRAGRQMHKFLGH------TKWIRSIRMDR---DTVITGSDDW 1026 (1178)
Q Consensus 960 ---~~~~~~~I~~l~~sp~-~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~------~~~v~~l~~~~---~~l~sgs~dg 1026 (1178)
...|...|.+++|+|+ +..+++++.||.|++||+++++.+..+..+ ...+.+++|++ ..+++++.|+
T Consensus 158 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~ 237 (416)
T 2pm9_A 158 PGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSD 237 (416)
T ss_dssp CCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCS
T ss_pred cccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCC
Confidence 3568889999999998 789999999999999999999999888776 78999999965 3899999999
Q ss_pred ---cEEEEEcCCC-eeeeEec-cCCCcEEEEEEec-CCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE--ec
Q 001042 1027 ---TARMWSISRG-TCDAVLA-CHAGPVQCVEYSS-SDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI--NA 1098 (1178)
Q Consensus 1027 ---~I~iwd~~~~-~~~~~~~-~h~~~I~~l~~sp-dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~ 1098 (1178)
.|++||++++ .....+. +|...|++++|+| ++++|++++.||.|++||+.++ ..+..+.+|...|.++ +|
T Consensus 238 ~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~--~~~~~~~~~~~~v~~~~~s~ 315 (416)
T 2pm9_A 238 NDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA--EQLSQFPARGNWCFKTKFAP 315 (416)
T ss_dssp SSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC--CEEEEEECSSSCCCCEEECT
T ss_pred CCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC--ccceeecCCCCceEEEEECC
Confidence 9999999986 6777787 8999999999999 9999999999999999999998 6777888888887554 78
Q ss_pred CC-CEEEEEeCCCcEEEEEcCCCccccccC---------------------CCCCccceeEeeccCCCcccEEEEEEcCC
Q 001042 1099 GD-HWLGIGAADNSMSLFHRPQERLGGFSG---------------------TGSKMSGWQLYRTPQKTVAVVRCIASDLE 1156 (1178)
Q Consensus 1099 dg-~~Lasgs~Dg~I~iwd~~~~~~~~~~~---------------------~g~~~~~~~~~~~~~~h~~~V~~lafspd 1156 (1178)
++ .++++++.||.|++||+.+........ .+.....+.. ..+..|...+++++|+||
T Consensus 316 ~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~d 394 (416)
T 2pm9_A 316 EAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHL-QAPTWYGEPSPAAHWAFG 394 (416)
T ss_dssp TCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCC-CCCSTTCCCSCCCEEETT
T ss_pred CCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccc-cCCccccCCccceEEeeC
Confidence 88 899999999999999998654321110 0111111222 334457788899999999
Q ss_pred CCEEEEEeCCCcEEEEECCCC
Q 001042 1157 RKRICSGGRNGLLRLWEATIN 1177 (1178)
Q Consensus 1157 g~~Las~s~Dg~V~IWdv~tg 1177 (1178)
|++||+++.||+|+||++.++
T Consensus 395 g~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 395 GKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp TEEECBCTTSSCBCCBCCCCC
T ss_pred CeEEEEeCCCCeEEEEEeccC
Confidence 999999999999999999986
No 39
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.6e-35 Score=344.67 Aligned_cols=285 Identities=18% Similarity=0.221 Sum_probs=234.5
Q ss_pred ccCCcceEEEEecCCCCcccccccc-e-------eecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEee
Q 001042 765 SGIGRSWVQSMFSREASSRSHSFSR-V-------RKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCV 836 (1178)
Q Consensus 765 ~gh~~~i~~~aFSpdg~~las~~~d-I-------~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs 836 (1178)
.+|...|.+++|||||++||+++.+ + ++|+..++.. .........+|...|++++|+
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~---------------~~~~~~~~~~~~~~V~~~~~s 103 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAP---------------NESLCTAGVQTEAGVTDVAWV 103 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC------------------CGGGCSEEEECSSCEEEEEEE
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCc---------------ceeEecccCCCCCCEEEEEEc
Confidence 5688999999999999999999985 4 4444444331 112344566899999999998
Q ss_pred eccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCcee--eEeecccccceEE--EecCCCEEEEEeCCCcEEEEECCC
Q 001042 837 TKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSEL--RATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQT 912 (1178)
Q Consensus 837 ~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~--~~~l~~h~~~V~~--~s~d~~~l~sgs~dg~I~iwd~~t 912 (1178)
|++. +++++.||+|+|||+....... .....+|...|.+ ++|++++|++|+.||+|++||+.+
T Consensus 104 ------------~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~ 170 (357)
T 4g56_B 104 ------------SEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQ 170 (357)
T ss_dssp ------------TTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred ------------CCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 7765 5567889999999987433222 2345589999986 589999999999999999999999
Q ss_pred CcEEEEecCCCCceEEEEEe-CC-CeEEEEeCCCeEEEEeCCCCeEEEEec--CCCCCEEEEEEeCC-CCEEEEEeCCCe
Q 001042 913 SQLLEELKGHDAQVSCVRML-SG-ERVLTASHDGTVKMWDVRTDTCVATVG--RCSSAVLCMEYDDS-TGILAAGGRDAV 987 (1178)
Q Consensus 913 ~~~~~~l~~h~~~V~~l~~~-~~-~~l~sgs~dg~V~iwd~~~~~~~~~~~--~~~~~I~~l~~sp~-~~~l~sgs~dg~ 987 (1178)
++.+..+.+|...|++++|+ ++ ..+++++.||+|++||+++++....+. .+...+.+++|+|+ +.++++|+.|+.
T Consensus 171 ~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~ 250 (357)
T 4g56_B 171 KAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGN 250 (357)
T ss_dssp TEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSC
T ss_pred CcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccc
Confidence 99999999999999999998 33 578999999999999999988766543 46678999999997 568889999999
Q ss_pred EEEEECCCCceEEEEecCCccEEEEEEcC---CEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEec-CCCEEEE
Q 001042 988 ANIWDIRAGRQMHKFLGHTKWIRSIRMDR---DTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSS-SDRGIIT 1063 (1178)
Q Consensus 988 I~lwD~~~~~~~~~~~~~~~~v~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp-dg~~L~s 1063 (1178)
|++||+++++.+..+.+|...|++++|++ .+|++|+.||+|++||+++++.+..+ +|.+.|++++|+| ++++|++
T Consensus 251 i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s 329 (357)
T 4g56_B 251 VSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTT 329 (357)
T ss_dssp EEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEE
T ss_pred eeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEE
Confidence 99999999999999999999999999954 37999999999999999999887665 6999999999998 7999999
Q ss_pred EeCCCcEEEEECCCC
Q 001042 1064 GSSDGLLRFWENDDG 1078 (1178)
Q Consensus 1064 gs~Dg~I~iwd~~~~ 1078 (1178)
|+.||+|++|++.+.
T Consensus 330 ~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 330 VGWDHKVLHHHLPSE 344 (357)
T ss_dssp EETTSCEEEEECC--
T ss_pred EcCCCeEEEEECCCC
Confidence 999999999999764
No 40
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-34 Score=330.80 Aligned_cols=285 Identities=24% Similarity=0.386 Sum_probs=235.8
Q ss_pred ceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEee-cc-cccceEE--EecCCC
Q 001042 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATL-KG-HTRTVRA--INSDRG 894 (1178)
Q Consensus 819 ~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l-~~-h~~~V~~--~s~d~~ 894 (1178)
.++.+.+|.++|++++|+ ++ +||+|+.||+|++||+..........+ .+ |...|.+ ++|+++
T Consensus 6 ~~~~~~~h~~~v~~~~~s------------~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 71 (330)
T 2hes_X 6 LIKSLKLYKEKIWSFDFS------------QG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTS 71 (330)
T ss_dssp EEEEEECCSSCEEEEEEE------------TT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSS
T ss_pred cceeeccCCCceeeeccC------------CC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCC
Confidence 678899999999999997 55 999999999999999874434455555 44 9999985 589999
Q ss_pred EEEEEeCCCcEEEEECCC-------CcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCC----CeEEEEecC
Q 001042 895 KVVSGSDDQSVLVWDKQT-------SQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRT----DTCVATVGR 962 (1178)
Q Consensus 895 ~l~sgs~dg~I~iwd~~t-------~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~----~~~~~~~~~ 962 (1178)
+|++|+.|++|++||+.. .+.+..+.+|...|.+++|+ ++.+|++|+.||+|++||++. .+++..+.+
T Consensus 72 ~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~ 151 (330)
T 2hes_X 72 LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQE 151 (330)
T ss_dssp EEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECC
T ss_pred EEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEecc
Confidence 999999999999999853 45677889999999999999 788999999999999999943 256778889
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC--ceEEEEecCCccEEEEEEcCC----EEEEEeCCCcEEEEEcCCC
Q 001042 963 CSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAG--RQMHKFLGHTKWIRSIRMDRD----TVITGSDDWTARMWSISRG 1036 (1178)
Q Consensus 963 ~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~--~~~~~~~~~~~~v~~l~~~~~----~l~sgs~dg~I~iwd~~~~ 1036 (1178)
|...|.+++|+|++.+|++|+.||.|++||..++ +++..+.+|.+.|.+++|+++ .+++|+.|++|++||+..+
T Consensus 152 h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~ 231 (330)
T 2hes_X 152 HSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD 231 (330)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEE
T ss_pred CCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCC
Confidence 9999999999999999999999999999999876 678889999999999999654 7999999999999998764
Q ss_pred --------eeeeEecc-CCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEE-ecccCC-cEEEE--ec--CCC
Q 001042 1037 --------TCDAVLAC-HAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKN-VTIHSS-AILSI--NA--GDH 1101 (1178)
Q Consensus 1037 --------~~~~~~~~-h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~-~~~h~~-~i~~i--s~--dg~ 1101 (1178)
.+...+.. |...|++++|++++ +|++++.||.|++||..+++...... ..+|.. .|.++ +| +++
T Consensus 232 ~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~ 310 (330)
T 2hes_X 232 DEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKT 310 (330)
T ss_dssp CTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----C
T ss_pred CccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCce
Confidence 34455554 89999999999665 89999999999999998875433433 356776 77665 56 689
Q ss_pred EEEEEeCCCcEEEEEcC
Q 001042 1102 WLGIGAADNSMSLFHRP 1118 (1178)
Q Consensus 1102 ~Lasgs~Dg~I~iwd~~ 1118 (1178)
+||+|+.||+|++||+.
T Consensus 311 ~las~s~Dg~v~~W~~~ 327 (330)
T 2hes_X 311 ILATGGDDGIVNFWSLE 327 (330)
T ss_dssp CEEEEETTSEEEEEEC-
T ss_pred EEEEecCCCcEEEEEec
Confidence 99999999999999986
No 41
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.9e-34 Score=328.36 Aligned_cols=285 Identities=18% Similarity=0.327 Sum_probs=248.3
Q ss_pred cceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCC---ceeeEeecccccceEE--EecC
Q 001042 818 SNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRG---SELRATLKGHTRTVRA--INSD 892 (1178)
Q Consensus 818 ~~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~---~~~~~~l~~h~~~V~~--~s~d 892 (1178)
....++.||.+.|++++|+| .++++|+||+.||+|++||+.... ......+.+|...|.+ ++++
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~-----------~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~d 76 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSA-----------GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTAD 76 (319)
T ss_dssp EEEEEECCCSSCEEEEEECS-----------SCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTT
T ss_pred EEEEEEccccceEEEEEccC-----------CCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCC
Confidence 36678999999999999983 345899999999999999975222 2345778999999985 5899
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEE
Q 001042 893 RGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCME 971 (1178)
Q Consensus 893 ~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~ 971 (1178)
++++++|+.|++|++||+.+++.+..+.+|...|.+++|+ ++..+++|+.||+|++||++ ++++..+.+|...|.+++
T Consensus 77 g~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~ 155 (319)
T 3frx_A 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVR 155 (319)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEE
Confidence 9999999999999999999999999999999999999999 67899999999999999996 567778889999999999
Q ss_pred EeCC------CCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCeeeeEec
Q 001042 972 YDDS------TGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMD--RDTVITGSDDWTARMWSISRGTCDAVLA 1043 (1178)
Q Consensus 972 ~sp~------~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 1043 (1178)
++|. +..+++++.|+.|++||+++++....+.+|...|.+++++ ++++++|+.||.|++||+.+++.+..+.
T Consensus 156 ~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~ 235 (319)
T 3frx_A 156 VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS 235 (319)
T ss_dssp ECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred EccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec
Confidence 9984 4589999999999999999999999999999999999995 4599999999999999999999998887
Q ss_pred cCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEec--------ccCCcEE--EEecCCCEEEEEeCCCcEE
Q 001042 1044 CHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVT--------IHSSAIL--SINAGDHWLGIGAADNSMS 1113 (1178)
Q Consensus 1044 ~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~--------~h~~~i~--~is~dg~~Lasgs~Dg~I~ 1113 (1178)
. ...|.+++|+|++.++++++.+ .+++|+++.+ .....+. .|...+. +++|+|++|++|+.||.|+
T Consensus 236 ~-~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~ 311 (319)
T 3frx_A 236 A-QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQ--YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIR 311 (319)
T ss_dssp C-CSCEEEEEECSSSSEEEEEETT-EEEEEEETTE--EEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEE
T ss_pred C-CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcC--eeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEE
Confidence 5 4689999999999999988755 5999999876 3344332 2344554 4589999999999999999
Q ss_pred EEEcC
Q 001042 1114 LFHRP 1118 (1178)
Q Consensus 1114 iwd~~ 1118 (1178)
+||+.
T Consensus 312 vWd~~ 316 (319)
T 3frx_A 312 VWQVM 316 (319)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99986
No 42
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=4.1e-34 Score=328.36 Aligned_cols=313 Identities=20% Similarity=0.367 Sum_probs=247.7
Q ss_pred EEeCCCc--EEEEcCCCCCceeeEeecccccceEEE--ecC-CCEEEEEeCCCcEEEEECCCCc-----EEEEecCCCCc
Q 001042 856 SGSTDCL--VKIWDPSLRGSELRATLKGHTRTVRAI--NSD-RGKVVSGSDDQSVLVWDKQTSQ-----LLEELKGHDAQ 925 (1178)
Q Consensus 856 sgs~Dg~--I~iWd~~~~~~~~~~~l~~h~~~V~~~--s~d-~~~l~sgs~dg~I~iwd~~t~~-----~~~~l~~h~~~ 925 (1178)
+|.+.|+ +.++........+..+++||.+.|+++ +|+ +++|+||+.||+|++||+.+++ +...+.+|...
T Consensus 9 ~g~d~g~~~~~~~~~~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~ 88 (340)
T 4aow_A 9 SGVDLGTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHF 88 (340)
T ss_dssp -----------------CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSC
T ss_pred cccCCCCccEEEEEccCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCC
Confidence 4555555 334444334456677899999999975 776 6899999999999999987653 56778999999
Q ss_pred eEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceE-EEEe
Q 001042 926 VSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQM-HKFL 1003 (1178)
Q Consensus 926 V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~-~~~~ 1003 (1178)
|.+++|+ ++.++++|+.||.|++|+...+........+...+....++++++.+++|+.|+.+++||....... ....
T Consensus 89 V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~ 168 (340)
T 4aow_A 89 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDE 168 (340)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSS
T ss_pred EEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEec
Confidence 9999999 7889999999999999999999988888888899999999999999999999999999999876543 3456
Q ss_pred cCCccEEEEEEcC----CEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 001042 1004 GHTKWIRSIRMDR----DTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGG 1079 (1178)
Q Consensus 1004 ~~~~~v~~l~~~~----~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~ 1079 (1178)
+|...+.++++.. ..+++++.|+.|++||+++++....+.+|.+.|++++|+|++++|++|+.||.|++||+.++
T Consensus 169 ~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~- 247 (340)
T 4aow_A 169 SHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG- 247 (340)
T ss_dssp SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT-
T ss_pred cccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC-
Confidence 7889999999843 37899999999999999999999999999999999999999999999999999999999988
Q ss_pred eEEEEEecccCCcEEEE--ecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCC
Q 001042 1080 IKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLER 1157 (1178)
Q Consensus 1080 ~~~~~~~~~h~~~i~~i--s~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg 1157 (1178)
..+..+..+ ..+.++ +|++.++ +++.|+.|++||+.++......... .......+|...|++++|+|||
T Consensus 248 -~~~~~~~~~-~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~------~~~~~~~~h~~~v~~l~~s~dg 318 (340)
T 4aow_A 248 -KHLYTLDGG-DIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQE------VISTSSKAEPPQCTSLAWSADG 318 (340)
T ss_dssp -EEEEEEECS-SCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------------CCCCCEEEEEECTTS
T ss_pred -ceeeeecCC-ceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEecccc------ceeeeccCCCCCEEEEEECCCC
Confidence 566666544 455544 6766554 5667999999999754321111111 2223456889999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCC
Q 001042 1158 KRICSGGRNGLLRLWEATINI 1178 (1178)
Q Consensus 1158 ~~Las~s~Dg~V~IWdv~tg~ 1178 (1178)
++|++|+.||+|+|||++||.
T Consensus 319 ~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 319 QTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp SEEEEEETTSCEEEEEEEC--
T ss_pred CEEEEEeCCCEEEEEeCCCcC
Confidence 999999999999999999984
No 43
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=4.6e-34 Score=326.92 Aligned_cols=314 Identities=17% Similarity=0.312 Sum_probs=268.4
Q ss_pred CCcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceecc
Q 001042 767 IGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDL 844 (1178)
Q Consensus 767 h~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~ 844 (1178)
|...+.+++|||||+.++++..+ +..|+..... ......+|.+.|++++|+
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~h~~~v~~~~~~-------- 60 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHA-------------------RQINTLNHGEVVCAVTIS-------- 60 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEE-------------------EEEEEECCSSCCCEEEEC--------
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCcc-------------------ccceeccCCCceEEEEEe--------
Confidence 35678889999999999888766 7777655433 233445899999999998
Q ss_pred ccccCCCCEEEEEeCCCcEEEEcCCCCCc-eeeEeec--ccccceEE--EecCCCEEEEEeCCCcEEEEECCCCc--EEE
Q 001042 845 VGDREDAGFFISGSTDCLVKIWDPSLRGS-ELRATLK--GHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQ--LLE 917 (1178)
Q Consensus 845 ~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~-~~~~~l~--~h~~~V~~--~s~d~~~l~sgs~dg~I~iwd~~t~~--~~~ 917 (1178)
++++++++++ ||.|++||+..... .....+. +|...|.+ ++++++++++++.||.|++||+.+++ ...
T Consensus 61 ----~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 135 (337)
T 1gxr_A 61 ----NPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA 135 (337)
T ss_dssp ----SSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEE
T ss_pred ----cCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceee
Confidence 8999999999 99999999874321 1223333 78888885 58999999999999999999999887 667
Q ss_pred EecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Q 001042 918 ELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAG 996 (1178)
Q Consensus 918 ~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~ 996 (1178)
.+..|...|.+++|+ ++..+++++.||.|++||+++++.+..+..|...+.+++|+|+++.+++++.||.|++||++++
T Consensus 136 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 215 (337)
T 1gxr_A 136 ELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG 215 (337)
T ss_dssp EEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred ecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCC
Confidence 788899999999999 6789999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEE
Q 001042 997 RQMHKFLGHTKWIRSIRMD--RDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWE 1074 (1178)
Q Consensus 997 ~~~~~~~~~~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd 1074 (1178)
+.+..+ .+...+.+++++ ++.+++++.||.|++||+++++. ..+..|...|++++|+|+++++++++.||.|++||
T Consensus 216 ~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 293 (337)
T 1gxr_A 216 RQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293 (337)
T ss_dssp EEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ceEeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEE
Confidence 888776 477889999995 45999999999999999998875 46678999999999999999999999999999999
Q ss_pred CCCCceEEEEEecccCCcEEEE--ecCCCEEEEEeCCCcEEEEEc
Q 001042 1075 NDDGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHR 1117 (1178)
Q Consensus 1075 ~~~~~~~~~~~~~~h~~~i~~i--s~dg~~Lasgs~Dg~I~iwd~ 1117 (1178)
+.+++.. .. ..|...+.++ +++++++++++.||.|++|++
T Consensus 294 ~~~~~~~--~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 294 TPYGASI--FQ-SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp TTTCCEE--EE-EECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCCCeEE--EE-ecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 9998533 22 3467777665 799999999999999999996
No 44
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.3e-34 Score=332.79 Aligned_cols=296 Identities=19% Similarity=0.323 Sum_probs=240.3
Q ss_pred eeeEeecccccceEEE-------ec-CCCEEEEEeCCCcEEEEECCCC-------cEEEEecCCCCceEEEEEe-CCCeE
Q 001042 874 ELRATLKGHTRTVRAI-------NS-DRGKVVSGSDDQSVLVWDKQTS-------QLLEELKGHDAQVSCVRML-SGERV 937 (1178)
Q Consensus 874 ~~~~~l~~h~~~V~~~-------s~-d~~~l~sgs~dg~I~iwd~~t~-------~~~~~l~~h~~~V~~l~~~-~~~~l 937 (1178)
.....+.+|...|.++ ++ ++++|++|+.|++|++||+.++ .....+.+|...|.+++|+ ++..+
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l 91 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA 91 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEE
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEE
Confidence 4457889999999976 44 8899999999999999998753 4567889999999999999 67889
Q ss_pred EEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEe---cCCccEEEEEE
Q 001042 938 LTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFL---GHTKWIRSIRM 1014 (1178)
Q Consensus 938 ~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~---~~~~~v~~l~~ 1014 (1178)
++|+.||+|++||+++++.+..+.+|...|.+++|+|+++++++|+.||.|++||+... ...... +|...|.+++|
T Consensus 92 ~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~ 170 (343)
T 2xzm_R 92 ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRY 170 (343)
T ss_dssp EEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEE
T ss_pred EEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999843 333333 68889999999
Q ss_pred cC------------CEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEE
Q 001042 1015 DR------------DTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKC 1082 (1178)
Q Consensus 1015 ~~------------~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~ 1082 (1178)
++ .++++++.||.|++|| .+++....+.+|...|++++|+|+|++|++|+.||.|++||+.+.. ..
T Consensus 171 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~-~~ 248 (343)
T 2xzm_R 171 SPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLT-YP 248 (343)
T ss_dssp CCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCS-SC
T ss_pred ccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCc-cc
Confidence 65 4799999999999999 5567778889999999999999999999999999999999995432 11
Q ss_pred EEEecccCCcEE--EEecCCCEEEEEeCCCcEEEEEcCCCccccc-cCCCCCccceeEeeccCCCcccEEEEEEcCCCCE
Q 001042 1083 VKNVTIHSSAIL--SINAGDHWLGIGAADNSMSLFHRPQERLGGF-SGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKR 1159 (1178)
Q Consensus 1083 ~~~~~~h~~~i~--~is~dg~~Lasgs~Dg~I~iwd~~~~~~~~~-~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~ 1159 (1178)
...+ .+...|. +++|++.++++| .|+.|++||+.+.+.... ....... .......+|...|++++|+|+|++
T Consensus 249 ~~~~-~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~sp~g~~ 323 (343)
T 2xzm_R 249 QREF-DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPI---TKAEGQKGKNPQCTSLAWNALGKK 323 (343)
T ss_dssp SEEE-ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSG---GGBTTBCCSCCCEEEEEECSSSCC
T ss_pred ceee-cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcc---hhhhhhcCCCCceEEEEECCCCCe
Confidence 2222 1333454 458999888755 578899999975432110 0000000 001123478889999999999999
Q ss_pred EEEEeCCCcEEEEECCCC
Q 001042 1160 ICSGGRNGLLRLWEATIN 1177 (1178)
Q Consensus 1160 Las~s~Dg~V~IWdv~tg 1177 (1178)
|++|+.||+|++|++++|
T Consensus 324 l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 324 LFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp EEEEETTSEEEEEEEEEE
T ss_pred EEEecCCceEEEEEEEcc
Confidence 999999999999999875
No 45
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.5e-34 Score=339.11 Aligned_cols=281 Identities=21% Similarity=0.370 Sum_probs=245.5
Q ss_pred ccccCCcceEEEEecCCCCcccccccc-eeecccccccCCCCCCCCCCCcCCcccccceEEecc----------------
Q 001042 763 EASGIGRSWVQSMFSREASSRSHSFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRG---------------- 825 (1178)
Q Consensus 763 ~~~gh~~~i~~~aFSpdg~~las~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g---------------- 825 (1178)
...+|...|.+++|||||+++|+++++ +++|++.++. .+..+.+
T Consensus 59 ~~~~h~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~-------------------~~~~l~~~~~~~~~~~~~~~~~~ 119 (393)
T 1erj_A 59 KSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGS-------------------LVARLSDDSAANKDPENLNTSSS 119 (393)
T ss_dssp EEEECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCC-------------------EEEEECC----------------
T ss_pred EecCCCCEEEEEEECCCCCEEEEEcCCcEEEEEecCCC-------------------EEEEecCcccccccccccccccc
Confidence 345799999999999999999998877 9999998876 2333333
Q ss_pred --cccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEE--EecCCCEEEEEeC
Q 001042 826 --HAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSD 901 (1178)
Q Consensus 826 --H~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~--~s~d~~~l~sgs~ 901 (1178)
+...|++++|+ |||++|++|+.||+|++||+. ..+....+.+|...|.+ ++++++++++|+.
T Consensus 120 ~~~~~~v~~v~~s------------~dg~~l~s~~~d~~i~iwd~~--~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~ 185 (393)
T 1erj_A 120 PSSDLYIRSVCFS------------PDGKFLATGAEDRLIRIWDIE--NRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185 (393)
T ss_dssp -CCCCBEEEEEEC------------TTSSEEEEEETTSCEEEEETT--TTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred CCCceeEEEEEEC------------CCCCEEEEEcCCCeEEEEECC--CCcEEEEEccCCCCEEEEEEcCCCCEEEEecC
Confidence 33458899987 899999999999999999976 56677889999999986 5899999999999
Q ss_pred CCcEEEEECCCCcEEEEecCCCCceEEEEEe--CCCeEEEEeCCCeEEEEeCCCCeEEEEe-------cCCCCCEEEEEE
Q 001042 902 DQSVLVWDKQTSQLLEELKGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTDTCVATV-------GRCSSAVLCMEY 972 (1178)
Q Consensus 902 dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~--~~~~l~sgs~dg~V~iwd~~~~~~~~~~-------~~~~~~I~~l~~ 972 (1178)
|++|++||+.+++....+. +...+.+++|+ ++..+++|+.||+|++||+++++.+..+ .+|...|.+++|
T Consensus 186 d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 264 (393)
T 1erj_A 186 DRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF 264 (393)
T ss_dssp TSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEE
T ss_pred CCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEE
Confidence 9999999999999887776 56779999998 5788999999999999999999887776 568889999999
Q ss_pred eCCCCEEEEEeCCCeEEEEECCCC------------ceEEEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCee
Q 001042 973 DDSTGILAAGGRDAVANIWDIRAG------------RQMHKFLGHTKWIRSIRMD--RDTVITGSDDWTARMWSISRGTC 1038 (1178)
Q Consensus 973 sp~~~~l~sgs~dg~I~lwD~~~~------------~~~~~~~~~~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~ 1038 (1178)
+|+++++++|+.||.|++||+++. .+...+.+|...|.+++++ +.++++|+.||.|++||..+++.
T Consensus 265 ~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~ 344 (393)
T 1erj_A 265 TRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP 344 (393)
T ss_dssp CTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCE
T ss_pred CCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeE
Confidence 999999999999999999999763 3456778999999999994 56999999999999999999999
Q ss_pred eeEeccCCCcEEEEEEec------CCCEEEEEeCCCcEEEEECCC
Q 001042 1039 DAVLACHAGPVQCVEYSS------SDRGIITGSSDGLLRFWENDD 1077 (1178)
Q Consensus 1039 ~~~~~~h~~~I~~l~~sp------dg~~L~sgs~Dg~I~iwd~~~ 1077 (1178)
+..+.+|.+.|.+++|++ ++++|++|+.||+|++|++..
T Consensus 345 ~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 345 LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred EEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 999999999999999986 688999999999999999864
No 46
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=3.4e-34 Score=328.00 Aligned_cols=315 Identities=17% Similarity=0.259 Sum_probs=271.0
Q ss_pred cccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEE--EecCCCEEEEEeCCC
Q 001042 826 HAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQ 903 (1178)
Q Consensus 826 H~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~--~s~d~~~l~sgs~dg 903 (1178)
|.++|.+++|+ |||++++++..++.+..|+.. .........+|...|.+ ++++++++++++ ||
T Consensus 8 ~~~~v~~~~~s------------~dg~~~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg 72 (337)
T 1gxr_A 8 GSKPAYSFHVT------------ADGQMQPVPFPPDALIGPGIP--RHARQINTLNHGEVVCAVTISNPTRHVYTGG-KG 72 (337)
T ss_dssp EEEECCEEEEC------------SSSCEEECCCCTTSSSSTTCC--SEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BS
T ss_pred cCCceeEEEEC------------CCCCEEEeecCCCcEeccccC--CccccceeccCCCceEEEEEecCCcEEEEcC-CC
Confidence 56789999998 999999999988888888754 23333344479888875 589999999999 99
Q ss_pred cEEEEECCCCcE---EEEec--CCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCe--EEEEecCCCCCEEEEEEeCC
Q 001042 904 SVLVWDKQTSQL---LEELK--GHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDT--CVATVGRCSSAVLCMEYDDS 975 (1178)
Q Consensus 904 ~I~iwd~~t~~~---~~~l~--~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~--~~~~~~~~~~~I~~l~~sp~ 975 (1178)
.|++||+.+++. ...+. +|...|.+++|+ +++.+++++.||.|++||+.+++ ....+..|...+.+++|+|+
T Consensus 73 ~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~ 152 (337)
T 1gxr_A 73 CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD 152 (337)
T ss_dssp EEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTT
T ss_pred eEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCC
Confidence 999999987653 23333 799999999999 67889999999999999999887 56677788999999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEE
Q 001042 976 TGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMD--RDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVE 1053 (1178)
Q Consensus 976 ~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~ 1053 (1178)
++.+++++.||.|++||+++++.+..+..|...+.+++|+ ++.+++++.||.|++||+++++.+..+. +...+.+++
T Consensus 153 ~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~ 231 (337)
T 1gxr_A 153 SKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLG 231 (337)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEE
T ss_pred CCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEE
Confidence 9999999999999999999999999999999999999995 4599999999999999999998887775 788999999
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE--ecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCC
Q 001042 1054 YSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSK 1131 (1178)
Q Consensus 1054 ~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~ 1131 (1178)
|+|+++++++++.||.|++||+.+++ ...+..|...+.++ +|+++++++++.||.|++||+.+++
T Consensus 232 ~s~~~~~l~~~~~~~~i~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~---------- 298 (337)
T 1gxr_A 232 YCPTGEWLAVGMESSNVEVLHVNKPD---KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA---------- 298 (337)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTSSC---EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC----------
T ss_pred ECCCCCEEEEEcCCCcEEEEECCCCC---eEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCe----------
Confidence 99999999999999999999999874 23567788888766 7899999999999999999997432
Q ss_pred ccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001042 1132 MSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEAT 1175 (1178)
Q Consensus 1132 ~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~ 1175 (1178)
.. ....|...|++++|+|++++|++++.||.|++|++.
T Consensus 299 -----~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 299 -----SI-FQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp -----EE-EEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred -----EE-EEecCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 11 123577889999999999999999999999999973
No 47
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-34 Score=328.18 Aligned_cols=292 Identities=17% Similarity=0.310 Sum_probs=236.1
Q ss_pred ceeeEeecccccceEEEecCCCEEEEEeCCCcEEEEECCCC--cEEEEe-cC-CCCceEEEEEe-CCCeEEEEeCCCeEE
Q 001042 873 SELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTS--QLLEEL-KG-HDAQVSCVRML-SGERVLTASHDGTVK 947 (1178)
Q Consensus 873 ~~~~~~l~~h~~~V~~~s~d~~~l~sgs~dg~I~iwd~~t~--~~~~~l-~~-h~~~V~~l~~~-~~~~l~sgs~dg~V~ 947 (1178)
.+....+.+|...|.++..++.+|++|+.|++|++||+.++ +....+ .+ |...|.+++|+ ++..+++|+.|++|+
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~ 83 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVS 83 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred cccceeeccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 45667889999999988655569999999999999999875 445555 44 99999999999 688999999999999
Q ss_pred EEeCCC-------CeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC----CceEEEEecCCccEEEEEEcC
Q 001042 948 MWDVRT-------DTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRA----GRQMHKFLGHTKWIRSIRMDR 1016 (1178)
Q Consensus 948 iwd~~~-------~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~----~~~~~~~~~~~~~v~~l~~~~ 1016 (1178)
+||+.. .+.+..+.+|...|.+++|+|++++|++|+.|+.|++||++. .+++..+.+|...|.+++|++
T Consensus 84 iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p 163 (330)
T 2hes_X 84 IWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP 163 (330)
T ss_dssp EEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS
T ss_pred EEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC
Confidence 999853 456778889999999999999999999999999999999953 246778889999999999954
Q ss_pred --CEEEEEeCCCcEEEEEcCCC--eeeeEeccCCCcEEEEEEecC--CCEEEEEeCCCcEEEEECCCCc------eEEEE
Q 001042 1017 --DTVITGSDDWTARMWSISRG--TCDAVLACHAGPVQCVEYSSS--DRGIITGSSDGLLRFWENDDGG------IKCVK 1084 (1178)
Q Consensus 1017 --~~l~sgs~dg~I~iwd~~~~--~~~~~~~~h~~~I~~l~~spd--g~~L~sgs~Dg~I~iwd~~~~~------~~~~~ 1084 (1178)
++|++|+.|++|++||..++ +++..+.+|.+.|.+++|+|+ +..|++|+.|++|++||+.++. ..+..
T Consensus 164 ~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~ 243 (330)
T 2hes_X 164 SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEA 243 (330)
T ss_dssp SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEee
Confidence 59999999999999999876 678889999999999999998 7789999999999999986541 13444
Q ss_pred Eecc-cCCcEEEEec-CCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEe-eccCCCcc-cEEEEEEcC--CCC
Q 001042 1085 NVTI-HSSAILSINA-GDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLY-RTPQKTVA-VVRCIASDL--ERK 1158 (1178)
Q Consensus 1085 ~~~~-h~~~i~~is~-dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~-~~~~~h~~-~V~~lafsp--dg~ 1158 (1178)
.+.+ |...|.++.. ++.+|++|+.||+|++||..++ .|+.. ....+|.. .|++++|+| +++
T Consensus 244 ~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~-------------~~~~~~~~~~~h~~~~v~~v~~~~~~~~~ 310 (330)
T 2hes_X 244 ILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDG-------------EWKVFAKRALCHGVYEINVVKWLELNGKT 310 (330)
T ss_dssp ECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETT-------------EEEEEEEESCTTTTSCEEEEEEC-----C
T ss_pred ecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCC-------------ceEEEeccccccccceEEEEEEecCCCce
Confidence 5554 8888987732 3458999999999999998632 12222 23467877 899999999 799
Q ss_pred EEEEEeCCCcEEEEECCCC
Q 001042 1159 RICSGGRNGLLRLWEATIN 1177 (1178)
Q Consensus 1159 ~Las~s~Dg~V~IWdv~tg 1177 (1178)
+||||+.||+|++||+++.
T Consensus 311 ~las~s~Dg~v~~W~~~~~ 329 (330)
T 2hes_X 311 ILATGGDDGIVNFWSLEKA 329 (330)
T ss_dssp CEEEEETTSEEEEEEC---
T ss_pred EEEEecCCCcEEEEEeccC
Confidence 9999999999999999763
No 48
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.2e-33 Score=326.65 Aligned_cols=291 Identities=20% Similarity=0.306 Sum_probs=241.0
Q ss_pred ceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCC-----ceeeEeecccccceEE--Eec
Q 001042 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRG-----SELRATLKGHTRTVRA--INS 891 (1178)
Q Consensus 819 ~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~-----~~~~~~l~~h~~~V~~--~s~ 891 (1178)
...++.||.+.|++++|.... ..++|+++|+||+.||+|++||+.... ......+.+|...|.+ +++
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~------~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~ 86 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQ------KENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQ 86 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCS------STTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECS
T ss_pred eeeeeccchhhhhheeeEEEe------ecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECC
Confidence 567899999999999983100 001489999999999999999976322 2455778999999986 589
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEec---CCCCCE
Q 001042 892 DRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVG---RCSSAV 967 (1178)
Q Consensus 892 d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~---~~~~~I 967 (1178)
++.++++|+.|++|++||+.+++.+..+.+|...|.+++|+ ++..+++|+.||+|++||+.... ..... .|...|
T Consensus 87 ~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~v 165 (343)
T 2xzm_R 87 ENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC-KFSSAEKENHSDWV 165 (343)
T ss_dssp STTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE-EEECCTTTSCSSCE
T ss_pred CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc-eeeeecccCCCcee
Confidence 99999999999999999999999999999999999999999 78899999999999999998443 33333 678899
Q ss_pred EEEEEeCCC----------CEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEEcCC
Q 001042 968 LCMEYDDST----------GILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMD--RDTVITGSDDWTARMWSISR 1035 (1178)
Q Consensus 968 ~~l~~sp~~----------~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~ 1035 (1178)
.+++|+|++ .++++++.||.|++|| .+++....+.+|...|.+++|+ +++|++|+.||.|++||+.+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~ 244 (343)
T 2xzm_R 166 SCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILN 244 (343)
T ss_dssp EEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSC
T ss_pred eeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 999999987 7899999999999999 4567778889999999999995 45999999999999999954
Q ss_pred -CeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEec-----------ccCCcEEEE--ecCCC
Q 001042 1036 -GTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVT-----------IHSSAILSI--NAGDH 1101 (1178)
Q Consensus 1036 -~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~-----------~h~~~i~~i--s~dg~ 1101 (1178)
......+ .+...|++++|+|++.++++| .|+.|++||+.++.......+. +|...+.++ +|+|+
T Consensus 245 ~~~~~~~~-~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 322 (343)
T 2xzm_R 245 LTYPQREF-DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGK 322 (343)
T ss_dssp CSSCSEEE-ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSC
T ss_pred Ccccceee-cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCC
Confidence 4444444 356679999999999887655 5888999999887543333333 677777655 79999
Q ss_pred EEEEEeCCCcEEEEEcCC
Q 001042 1102 WLGIGAADNSMSLFHRPQ 1119 (1178)
Q Consensus 1102 ~Lasgs~Dg~I~iwd~~~ 1119 (1178)
+|++|+.||+|++|++.+
T Consensus 323 ~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 323 KLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp CEEEEETTSEEEEEEEEE
T ss_pred eEEEecCCceEEEEEEEc
Confidence 999999999999999863
No 49
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-35 Score=350.97 Aligned_cols=323 Identities=13% Similarity=0.169 Sum_probs=271.7
Q ss_pred CcceEEEEecCCCC-ccccc----------ccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEE
Q 001042 768 GRSWVQSMFSREAS-SRSHS----------FSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALH 834 (1178)
Q Consensus 768 ~~~i~~~aFSpdg~-~las~----------~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~ 834 (1178)
...+.+++|||||+ ++|++ +.| |++||+.++.... .+..+ +|.+.|++++
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~----------------~~~~~-~~~~~v~~~~ 74 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEK----------------PIASL-QVDSKFNDLD 74 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCS----------------CSCCC-CCSSCEEEEE
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCc----------------EEEEE-ecCCceEEEE
Confidence 45677889999997 88888 666 9999999765210 22223 5899999999
Q ss_pred eeeccceeccccccCCCCEEEEEeCCCcEEEEcCCC--CCceeeEeecccccceEE--EecC-CCEEEEEeCCCcEEEEE
Q 001042 835 CVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSL--RGSELRATLKGHTRTVRA--INSD-RGKVVSGSDDQSVLVWD 909 (1178)
Q Consensus 835 fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~--~~~~~~~~l~~h~~~V~~--~s~d-~~~l~sgs~dg~I~iwd 909 (1178)
|+ +++++|++|+.||.|++||+.. .+......+.+|...|.+ ++++ ++++++++.||.|++||
T Consensus 75 ~s------------~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd 142 (416)
T 2pm9_A 75 WS------------HNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWD 142 (416)
T ss_dssp EC------------SSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCB
T ss_pred EC------------CCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEE
Confidence 98 8999999999999999999873 124467888999999885 4787 89999999999999999
Q ss_pred CCCCc------EEE---EecCCCCceEEEEEe-C-CCeEEEEeCCCeEEEEeCCCCeEEEEecCC------CCCEEEEEE
Q 001042 910 KQTSQ------LLE---ELKGHDAQVSCVRML-S-GERVLTASHDGTVKMWDVRTDTCVATVGRC------SSAVLCMEY 972 (1178)
Q Consensus 910 ~~t~~------~~~---~l~~h~~~V~~l~~~-~-~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~------~~~I~~l~~ 972 (1178)
+.+++ ... ....|...|.+++|+ + +..+++++.||.|++||+++++.+..+..+ ...+.+++|
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 222 (416)
T 2pm9_A 143 MNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEW 222 (416)
T ss_dssp TTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEE
T ss_pred CCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEE
Confidence 99886 332 346799999999999 4 578999999999999999999999888776 788999999
Q ss_pred eCCC-CEEEEEeCCC---eEEEEECCCC-ceEEEEe-cCCccEEEEEEcC---CEEEEEeCCCcEEEEEcCCCeeeeEec
Q 001042 973 DDST-GILAAGGRDA---VANIWDIRAG-RQMHKFL-GHTKWIRSIRMDR---DTVITGSDDWTARMWSISRGTCDAVLA 1043 (1178)
Q Consensus 973 sp~~-~~l~sgs~dg---~I~lwD~~~~-~~~~~~~-~~~~~v~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~ 1043 (1178)
+|++ .++++++.|+ .|++||++++ ..+..+. +|...|.+++|++ +++++++.||.|++||+++++.+..+.
T Consensus 223 ~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~ 302 (416)
T 2pm9_A 223 HPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFP 302 (416)
T ss_dssp CSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEE
T ss_pred CCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeec
Confidence 9997 6899999998 9999999986 5677777 8999999999954 599999999999999999999999999
Q ss_pred cCCCcEEEEEEecCC-CEEEEEeCCCcEEEEECCCCceEEEE---------------Ee------------------ccc
Q 001042 1044 CHAGPVQCVEYSSSD-RGIITGSSDGLLRFWENDDGGIKCVK---------------NV------------------TIH 1089 (1178)
Q Consensus 1044 ~h~~~I~~l~~spdg-~~L~sgs~Dg~I~iwd~~~~~~~~~~---------------~~------------------~~h 1089 (1178)
+|...|++++|+|++ .++++++.||.|++||+.++...... .. ..|
T Consensus 303 ~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (416)
T 2pm9_A 303 ARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWY 382 (416)
T ss_dssp CSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTT
T ss_pred CCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccc
Confidence 999999999999999 89999999999999999876321110 00 013
Q ss_pred CCcE--EEEecCCCEEEEEeCCCcEEEEEcCC
Q 001042 1090 SSAI--LSINAGDHWLGIGAADNSMSLFHRPQ 1119 (1178)
Q Consensus 1090 ~~~i--~~is~dg~~Lasgs~Dg~I~iwd~~~ 1119 (1178)
...+ .+++|+|++|++|+.|++|+||++.+
T Consensus 383 ~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 383 GEPSPAAHWAFGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp CCCSCCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred cCCccceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence 3333 56799999999999999999999874
No 50
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=9.7e-33 Score=332.56 Aligned_cols=317 Identities=23% Similarity=0.410 Sum_probs=270.1
Q ss_pred ceEEecccccce-EEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEE--ecCCCE
Q 001042 819 NIRIIRGHAGAI-TALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDRGK 895 (1178)
Q Consensus 819 ~~~~l~gH~~~V-~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~--s~d~~~ 895 (1178)
....+.+|.+.| .++.+ +++++++|+.||+|++||+. ..+....+.+|...|.++ ++++ .
T Consensus 113 ~~~~l~~h~~~v~~~~~~--------------~~~~l~sgs~dg~i~vwd~~--~~~~~~~~~~h~~~V~~l~~~~~~-~ 175 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF--------------EDNYVITGADDKMIRVYDSI--NKKFLLQLSGHDGGVWALKYAHGG-I 175 (464)
T ss_dssp EEEEEECCSSSCEEEEEE--------------ETTEEEEEETTSCEEEEETT--TTEEEEEECCCSSCEEEEEECSTT-E
T ss_pred ceEEEcCCCCCcEEEEEE--------------CCCEEEEEcCCCcEEEEECC--CCcEEEEEeCCCcCEEEEEEcCCC-E
Confidence 567899999886 55554 47899999999999999976 566778899999999976 5555 9
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe---CCCeEEEEeCCCeEEEEeCCCCeE----------------
Q 001042 896 VVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML---SGERVLTASHDGTVKMWDVRTDTC---------------- 956 (1178)
Q Consensus 896 l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~---~~~~l~sgs~dg~V~iwd~~~~~~---------------- 956 (1178)
+++|+.||+|++||+.+++.+..+.+|...|.+++|+ ++..+++|+.||+|++||+.++..
T Consensus 176 l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 255 (464)
T 3v7d_B 176 LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHT 255 (464)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESC
T ss_pred EEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeec
Confidence 9999999999999999999999999999999999997 457899999999999999987652
Q ss_pred -------EEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEcC--CEEEEEeCCCc
Q 001042 957 -------VATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR--DTVITGSDDWT 1027 (1178)
Q Consensus 957 -------~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~--~~l~sgs~dg~ 1027 (1178)
...+.+|...+.++ +++++++++|+.||.|++||+++++.+..+.+|...|.++++++ +.+++|+.||.
T Consensus 256 ~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~ 333 (464)
T 3v7d_B 256 PEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT 333 (464)
T ss_dssp GGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred cCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCc
Confidence 45667788888877 57789999999999999999999999999999999999999954 59999999999
Q ss_pred EEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEEecCCCEEEEEe
Q 001042 1028 ARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSINAGDHWLGIGA 1107 (1178)
Q Consensus 1028 I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~Lasgs 1107 (1178)
|++||+++++++..+.+|...|.+++|+ ++++++|+.||.|++||+.++... ......+...+.+++++++++++|+
T Consensus 334 i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~ 410 (464)
T 3v7d_B 334 IRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRK-FSYHHTNLSAITTFYVSDNILVSGS 410 (464)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEE-EEEECTTCCCEEEEEECSSEEEEEE
T ss_pred EEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCcee-eeecCCCCccEEEEEeCCCEEEEec
Confidence 9999999999999999999999999997 689999999999999999987422 2222345566778899999999998
Q ss_pred CCCcEEEEEcCCCccccccCCCCCccceeEee-ccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001042 1108 ADNSMSLFHRPQERLGGFSGTGSKMSGWQLYR-TPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEA 1174 (1178)
Q Consensus 1108 ~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~-~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv 1174 (1178)
||.|++||+.++ +++. ...+|...|++++|+ ++.++++++.||.+.+|-+
T Consensus 411 -dg~i~iwd~~~g---------------~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 411 -ENQFNIYNLRSG---------------KLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp -TTEEEEEETTTC---------------CEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred -CCeEEEEECCCC---------------cEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEEe
Confidence 899999999844 3343 356788999999998 4455666677877666543
No 51
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.8e-33 Score=338.99 Aligned_cols=315 Identities=23% Similarity=0.365 Sum_probs=272.9
Q ss_pred cccccCCcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeecc
Q 001042 762 AEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKR 839 (1178)
Q Consensus 762 ~~~~gh~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~ 839 (1178)
..+.||...++. +++++++++++|+.| |++||+.+++ .+..+.+|.+.|++++|+
T Consensus 115 ~~l~~h~~~v~~-~~~~~~~~l~sgs~dg~i~vwd~~~~~-------------------~~~~~~~h~~~V~~l~~~--- 171 (464)
T 3v7d_B 115 TTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKK-------------------FLLQLSGHDGGVWALKYA--- 171 (464)
T ss_dssp EEEECCSSSCEE-EEEEETTEEEEEETTSCEEEEETTTTE-------------------EEEEECCCSSCEEEEEEC---
T ss_pred EEEcCCCCCcEE-EEEECCCEEEEEcCCCcEEEEECCCCc-------------------EEEEEeCCCcCEEEEEEc---
Confidence 346788888654 344467899999998 9999998877 788899999999999997
Q ss_pred ceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEE--e--cCCCEEEEEeCCCcEEEEECCCCc-
Q 001042 840 EVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--N--SDRGKVVSGSDDQSVLVWDKQTSQ- 914 (1178)
Q Consensus 840 ~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~--s--~d~~~l~sgs~dg~I~iwd~~t~~- 914 (1178)
+++ ++++|+.||+|++||+. .......+.+|...|.++ + +++.++++|+.||+|++||+.+++
T Consensus 172 ---------~~~-~l~s~s~dg~i~vwd~~--~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~ 239 (464)
T 3v7d_B 172 ---------HGG-ILVSGSTDRTVRVWDIK--KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS 239 (464)
T ss_dssp ---------STT-EEEEEETTSCEEEEETT--TTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCC
T ss_pred ---------CCC-EEEEEeCCCCEEEEECC--CCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcc
Confidence 566 99999999999999986 556778899999999865 4 578999999999999999998765
Q ss_pred ----------------------EEEEecCCCCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEE
Q 001042 915 ----------------------LLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEY 972 (1178)
Q Consensus 915 ----------------------~~~~l~~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~ 972 (1178)
.+..+.+|...+.++.. +++.+++|+.||.|++||+++++++..+.+|...|.+++|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 318 (464)
T 3v7d_B 240 VPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG-HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIY 318 (464)
T ss_dssp C------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEE-ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred cccccccCCcceEeeccCCCeEEEEEccCccceEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEE
Confidence 25567889999998853 6789999999999999999999999999999999999999
Q ss_pred eCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEcCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEE
Q 001042 973 DDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCV 1052 (1178)
Q Consensus 973 sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l 1052 (1178)
+|+++.+++|+.||.|++||+++++.+..+.+|...|.+++++++++++|+.||.|++||+.++....... |...+..+
T Consensus 319 ~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~ 397 (464)
T 3v7d_B 319 DHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAIT 397 (464)
T ss_dssp ETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEE
T ss_pred cCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEE
Confidence 99999999999999999999999999999999999999999999999999999999999999887766654 67788889
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCceEEEEE-ecccCCcEEEEecCCCEEEEEe-CCCcEEEEE
Q 001042 1053 EYSSSDRGIITGSSDGLLRFWENDDGGIKCVKN-VTIHSSAILSINAGDHWLGIGA-ADNSMSLFH 1116 (1178)
Q Consensus 1053 ~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~-~~~h~~~i~~is~dg~~Lasgs-~Dg~I~iwd 1116 (1178)
+|+++++++++|+ ||.|++||+.++ ..+.. ...|...|.+++.+++.+++++ .||.+.+|-
T Consensus 398 ~~~~~~~~l~~~~-dg~i~iwd~~~g--~~~~~~~~~~~~~v~~v~~~~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 398 TFYVSDNILVSGS-ENQFNIYNLRSG--KLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp EEEECSSEEEEEE-TTEEEEEETTTC--CEEESCTTTTCSEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred EEEeCCCEEEEec-CCeEEEEECCCC--cEEehhhccCCCcEEEEEecCCEEEEEEEeCCeEEEEE
Confidence 9999999999998 999999999998 45553 5678899999977777666654 555554443
No 52
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.2e-33 Score=331.00 Aligned_cols=277 Identities=22% Similarity=0.480 Sum_probs=241.7
Q ss_pred cccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeeccccc------------------c
Q 001042 824 RGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTR------------------T 885 (1178)
Q Consensus 824 ~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~------------------~ 885 (1178)
.+|.+.|++++|+ |||++||+|+ |+++++|++. .......+.+|.. .
T Consensus 61 ~~h~~~V~~v~fs------------pdg~~la~g~-~~~v~i~~~~--~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 125 (393)
T 1erj_A 61 LDHTSVVCCVKFS------------NDGEYLATGC-NKTTQVYRVS--DGSLVARLSDDSAANKDPENLNTSSSPSSDLY 125 (393)
T ss_dssp EECSSCCCEEEEC------------TTSSEEEEEC-BSCEEEEETT--TCCEEEEECC-----------------CCCCB
T ss_pred cCCCCEEEEEEEC------------CCCCEEEEEc-CCcEEEEEec--CCCEEEEecCccccccccccccccccCCCcee
Confidence 3799999999998 8999999987 6899999976 3444455554432 2
Q ss_pred eE--EEecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecC
Q 001042 886 VR--AINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGR 962 (1178)
Q Consensus 886 V~--~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~ 962 (1178)
|. +++++++++++|+.||+|++||+.+++.+..+.+|...|.+++|+ ++..+++|+.||+|++||++++++...+.
T Consensus 126 v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~- 204 (393)
T 1erj_A 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS- 204 (393)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-
Confidence 55 568999999999999999999999999999999999999999999 78899999999999999999999887774
Q ss_pred CCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCceEEEE-------ecCCccEEEEEEc--CCEEEEEeCCCcEEEEE
Q 001042 963 CSSAVLCMEYDD-STGILAAGGRDAVANIWDIRAGRQMHKF-------LGHTKWIRSIRMD--RDTVITGSDDWTARMWS 1032 (1178)
Q Consensus 963 ~~~~I~~l~~sp-~~~~l~sgs~dg~I~lwD~~~~~~~~~~-------~~~~~~v~~l~~~--~~~l~sgs~dg~I~iwd 1032 (1178)
+...+.+++++| +++++++|+.||.|++||+++++.+..+ .+|...|.+++|+ +.++++|+.||.|++||
T Consensus 205 ~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd 284 (393)
T 1erj_A 205 IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN 284 (393)
T ss_dssp CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 567899999999 8999999999999999999999887776 5788999999995 55999999999999999
Q ss_pred cCCC------------eeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEEe---
Q 001042 1033 ISRG------------TCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSIN--- 1097 (1178)
Q Consensus 1033 ~~~~------------~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is--- 1097 (1178)
+++. .+...+.+|...|.+++|++++.+|++|+.||.|++||..++ ..+..+.+|...|.++.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~--~~~~~l~~h~~~v~~v~~~~ 362 (393)
T 1erj_A 285 LQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG--NPLLMLQGHRNSVISVAVAN 362 (393)
T ss_dssp C---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC--CEEEEEECCSSCEEEEEECS
T ss_pred CCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC--eEEEEECCCCCCEEEEEecC
Confidence 9753 455677889999999999999999999999999999999998 56778889999998773
Q ss_pred -----cCCCEEEEEeCCCcEEEEEcC
Q 001042 1098 -----AGDHWLGIGAADNSMSLFHRP 1118 (1178)
Q Consensus 1098 -----~dg~~Lasgs~Dg~I~iwd~~ 1118 (1178)
|++++||+|+.||+|++|++.
T Consensus 363 ~~~~~p~~~~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 363 GSSLGPEYNVFATGSGDCKARIWKYK 388 (393)
T ss_dssp SCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred CcCcCCCCCEEEEECCCCcEEECccc
Confidence 468899999999999999986
No 53
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-34 Score=344.73 Aligned_cols=336 Identities=15% Similarity=0.216 Sum_probs=261.6
Q ss_pred EecCCCCcccccccceeecccccccCCCCCCCCCCCcCCcccccceEEe-cccccceEEEEeeeccceeccccccC-CCC
Q 001042 775 MFSREASSRSHSFSRVRKWTSDAANENGTPRKQDSTAGGKKIQSNIRII-RGHAGAITALHCVTKREVWDLVGDRE-DAG 852 (1178)
Q Consensus 775 aFSpdg~~las~~~dI~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~gH~~~V~~l~fs~~~~~~~~~~~s~-d~~ 852 (1178)
.|+|+++.+++++ .|+.+ ++ .+..+ .+|.+.|++++|+ | +++
T Consensus 34 ~f~~~~~~~~~~~----~w~~~-g~-------------------~~~~~~~~h~~~V~~~~~s------------~~~~~ 77 (437)
T 3gre_A 34 EFGPIQEIVRSPN----MGNLR-GK-------------------LIATLMENEPNSITSSAVS------------PGETP 77 (437)
T ss_dssp GGCCCCCCCCCCC----GGGCC-CC-------------------EEEEECTTTTSCEEEEEEE------------CSSSC
T ss_pred hcCCccccccccc----ccccc-ce-------------------EEeeeccCCCCceEEEEEC------------CCCCC
Confidence 6899999988876 58744 33 57777 8999999999998 7 999
Q ss_pred EEEEEeCCCcEEEEcCCC---CC-ceeeEeecccccceEE--EecCCCEEEEEeCCCcEEEEECC---CCcEEEEecC--
Q 001042 853 FFISGSTDCLVKIWDPSL---RG-SELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQ---TSQLLEELKG-- 921 (1178)
Q Consensus 853 ~Lasgs~Dg~I~iWd~~~---~~-~~~~~~l~~h~~~V~~--~s~d~~~l~sgs~dg~I~iwd~~---t~~~~~~l~~-- 921 (1178)
+||+|+.||+|++||+.. .. ......+ +|...|.+ ++++++++++|+.||.|++||+. +++......+
T Consensus 78 ~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 156 (437)
T 3gre_A 78 YLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCEC 156 (437)
T ss_dssp EEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccce
Confidence 999999999999999752 11 1112222 58888986 47899999999999999999994 5555443332
Q ss_pred ----------CCCceEEEEEe---CCCeEEEEeCCCeEEEEeCCCCeEEEEecC--CCCCEEEEEEeCCCCEEEEEeCCC
Q 001042 922 ----------HDAQVSCVRML---SGERVLTASHDGTVKMWDVRTDTCVATVGR--CSSAVLCMEYDDSTGILAAGGRDA 986 (1178)
Q Consensus 922 ----------h~~~V~~l~~~---~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~--~~~~I~~l~~sp~~~~l~sgs~dg 986 (1178)
+...+.++.+. ++..+++|+.||.|++||+++++.+..+.. |...|++++|+|+++++++|+.||
T Consensus 157 i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg 236 (437)
T 3gre_A 157 IRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRG 236 (437)
T ss_dssp EEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTS
T ss_pred eEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCC
Confidence 55667777744 578899999999999999999999999887 789999999999999999999999
Q ss_pred eEEEEECCCCceEEEEe-cCCccEEEEEEcCC------EEEEEeCCCcEEEEEcCCCeeeeEecc---------------
Q 001042 987 VANIWDIRAGRQMHKFL-GHTKWIRSIRMDRD------TVITGSDDWTARMWSISRGTCDAVLAC--------------- 1044 (1178)
Q Consensus 987 ~I~lwD~~~~~~~~~~~-~~~~~v~~l~~~~~------~l~sgs~dg~I~iwd~~~~~~~~~~~~--------------- 1044 (1178)
.|++||+++++.+..+. .|...|.++++.+. ++++|+.||.|++||+++++++..+.+
T Consensus 237 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (437)
T 3gre_A 237 IIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEK 316 (437)
T ss_dssp CEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCS
T ss_pred eEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceeccccc
Confidence 99999999999999886 78889999977543 899999999999999999988877764
Q ss_pred -----------CCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE-----ecCCCEEEEEeC
Q 001042 1045 -----------HAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI-----NAGDHWLGIGAA 1108 (1178)
Q Consensus 1045 -----------h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i-----s~dg~~Lasgs~ 1108 (1178)
|...|++++|+ ++++|++|+.||.|++||+.++ .....+.+|......+ +++..+++..
T Consensus 317 ~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 391 (437)
T 3gre_A 317 GLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNEL--SSSKAVISPSRFSDVFIPTQVTANLTMLLRK-- 391 (437)
T ss_dssp SGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCG--GGCEEEECC--CCCEEEEEEEETTEEEEEEE--
T ss_pred ccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCc--ccceEEecccccCceEEEEEeecceEEEEEe--
Confidence 45568899999 7889999999999999999998 4455566654433222 2333333322
Q ss_pred CCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCC--CCEEEEEeCCCcEEEEE
Q 001042 1109 DNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLE--RKRICSGGRNGLLRLWE 1173 (1178)
Q Consensus 1109 Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspd--g~~Las~s~Dg~V~IWd 1173 (1178)
|+.. .+ ........|...|++++|+++ +.+|+||+.||.|+||+
T Consensus 392 ------~~~~---------~~------~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 392 ------MKRT---------ST------HSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ------CC----------------------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ------cccc---------cc------cccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 1111 11 122334579999999999998 88999999999999995
No 54
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.2e-33 Score=324.48 Aligned_cols=288 Identities=20% Similarity=0.364 Sum_probs=246.8
Q ss_pred ccccCCcceEEEEecCC-CCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeecc
Q 001042 763 EASGIGRSWVQSMFSRE-ASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKR 839 (1178)
Q Consensus 763 ~~~gh~~~i~~~aFSpd-g~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~ 839 (1178)
.+.||.+.|.+++|+|+ +++||||+.| |+|||+.+.+.. ...+.+.+.+|.+.|++++|+
T Consensus 33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~--------------~~~~~~~l~~h~~~V~~~~~s--- 95 (340)
T 4aow_A 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN--------------YGIPQRALRGHSHFVSDVVIS--- 95 (340)
T ss_dssp EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC--------------SEEEEEEECCCSSCEEEEEEC---
T ss_pred EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc--------------cceeeEEEeCCCCCEEEEEEC---
Confidence 36799999999999998 6899999998 999999875521 122577899999999999998
Q ss_pred ceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceE--EEecCCCEEEEEeCCCcEEEEECCCCcEE-
Q 001042 840 EVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKVVSGSDDQSVLVWDKQTSQLL- 916 (1178)
Q Consensus 840 ~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~--~~s~d~~~l~sgs~dg~I~iwd~~t~~~~- 916 (1178)
+++++|++|+.||.|++|+.. ..........+...+. .+++++..+++|+.|+.+++||.......
T Consensus 96 ---------~dg~~l~s~~~d~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~ 164 (340)
T 4aow_A 96 ---------SDGQFALSGSWDGTLRLWDLT--TGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYT 164 (340)
T ss_dssp ---------TTSSEEEEEETTSEEEEEETT--TTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEE
T ss_pred ---------CCCCEEEEEcccccceEEeec--ccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEE
Confidence 899999999999999999976 3444455555555555 45889999999999999999998766543
Q ss_pred EEecCCCCceEEEEEe---CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 001042 917 EELKGHDAQVSCVRML---SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDI 993 (1178)
Q Consensus 917 ~~l~~h~~~V~~l~~~---~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~ 993 (1178)
....+|...+.+++|+ ....+++++.|++|++||+++++.+..+.+|...|.+++|+|++++|++|+.||.|++||+
T Consensus 165 ~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~ 244 (340)
T 4aow_A 165 VQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL 244 (340)
T ss_dssp ECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred EEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEe
Confidence 3456899999999998 2456889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEecCCccEEEEEEcCC-EEEEEeCCCcEEEEEcCCCeeeeEec---------cCCCcEEEEEEecCCCEEEE
Q 001042 994 RAGRQMHKFLGHTKWIRSIRMDRD-TVITGSDDWTARMWSISRGTCDAVLA---------CHAGPVQCVEYSSSDRGIIT 1063 (1178)
Q Consensus 994 ~~~~~~~~~~~~~~~v~~l~~~~~-~l~sgs~dg~I~iwd~~~~~~~~~~~---------~h~~~I~~l~~spdg~~L~s 1063 (1178)
++++.+..+..+ ..+.+++++++ .+++++.|+.|++||++++..+..+. +|...|++++|+|+|++|++
T Consensus 245 ~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s 323 (340)
T 4aow_A 245 NEGKHLYTLDGG-DIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFA 323 (340)
T ss_dssp TTTEEEEEEECS-SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEE
T ss_pred ccCceeeeecCC-ceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEE
Confidence 999998888654 57999999654 78888899999999999887766543 58889999999999999999
Q ss_pred EeCCCcEEEEECCCCc
Q 001042 1064 GSSDGLLRFWENDDGG 1079 (1178)
Q Consensus 1064 gs~Dg~I~iwd~~~~~ 1079 (1178)
|+.||.|++||+.+|.
T Consensus 324 gs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 324 GYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EETTSCEEEEEEEC--
T ss_pred EeCCCEEEEEeCCCcC
Confidence 9999999999999883
No 55
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.2e-35 Score=354.49 Aligned_cols=334 Identities=13% Similarity=0.077 Sum_probs=239.0
Q ss_pred cccceEEEEeeecc---------ceecccc-------ccCCCCEEEEEeCCCcEEEEcCCCCCcee--eEeecccccceE
Q 001042 826 HAGAITALHCVTKR---------EVWDLVG-------DREDAGFFISGSTDCLVKIWDPSLRGSEL--RATLKGHTRTVR 887 (1178)
Q Consensus 826 H~~~V~~l~fs~~~---------~~~~~~~-------~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~--~~~l~~h~~~V~ 887 (1178)
+.+.|.+|+|+|.. +...+.. .+|+++.+++|+.||+|+|||+....... ...+.+|.+.|.
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~ 211 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW 211 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence 67788888888764 2332222 35777889999999999999976332211 244667788887
Q ss_pred E--EecC------CCEEEEEeCCCcEEEEECCCCcE-----------EEEecCCCCceEEEEEeCCCeEEEEeCCCeEEE
Q 001042 888 A--INSD------RGKVVSGSDDQSVLVWDKQTSQL-----------LEELKGHDAQVSCVRMLSGERVLTASHDGTVKM 948 (1178)
Q Consensus 888 ~--~s~d------~~~l~sgs~dg~I~iwd~~t~~~-----------~~~l~~h~~~V~~l~~~~~~~l~sgs~dg~V~i 948 (1178)
+ |+|+ +.+||+++.||+|++||+.+++. ...+.+|...|++++|++++.|++|+.||+|++
T Consensus 212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~l 291 (524)
T 2j04_B 212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAE 291 (524)
T ss_dssp EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEE
T ss_pred EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEE
Confidence 5 5665 57999999999999999987642 246788999999999997789999999999999
Q ss_pred EeCCCCe-EEEEecCCCCCEEEE--EEeCCC-CEEEEEeCCCeEEEEECCCCceEEEEecCCc--cEEEEEEcC--CEEE
Q 001042 949 WDVRTDT-CVATVGRCSSAVLCM--EYDDST-GILAAGGRDAVANIWDIRAGRQMHKFLGHTK--WIRSIRMDR--DTVI 1020 (1178)
Q Consensus 949 wd~~~~~-~~~~~~~~~~~I~~l--~~sp~~-~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~--~v~~l~~~~--~~l~ 1020 (1178)
||++++. ....+..|...|.++ +|++++ .+|++|+.||+|++||++++++...+.+|.. .|.+++|++ ..++
T Consensus 292 WD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~ 371 (524)
T 2j04_B 292 FDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYI 371 (524)
T ss_dssp EETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEE
T ss_pred EECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEE
Confidence 9999764 445678899999999 568887 8999999999999999999888777777653 578899965 4899
Q ss_pred EEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEe--cccCCcEEEE--
Q 001042 1021 TGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNV--TIHSSAILSI-- 1096 (1178)
Q Consensus 1021 sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~--~~h~~~i~~i-- 1096 (1178)
+++.|++|++||++++.++.++.+|.+.|++++|+|+|++|++|+.||+|++||+..+........ ..+...+.++
T Consensus 372 s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~ 451 (524)
T 2j04_B 372 YSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDY 451 (524)
T ss_dssp EECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBC
T ss_pred EeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEecc
Confidence 999999999999999999889999999999999999999999999999999999865421110000 0111234444
Q ss_pred ecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCC---EEEEEeCCCcEEEEE
Q 001042 1097 NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERK---RICSGGRNGLLRLWE 1173 (1178)
Q Consensus 1097 s~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~---~Las~s~Dg~V~IWd 1173 (1178)
+|++..+. ... .+.+|+.. .+| .+...+.+|...|.+|+|+|++. ++|+|+.||+|+||+
T Consensus 452 sp~g~~~~-~~~--~~~~~~~~--------~~g------~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~ 514 (524)
T 2j04_B 452 SIKDDKYR-IDS--SYEVYPLT--------VND------VSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEY 514 (524)
T ss_dssp CSSSCEEE-ECC--CCCCCC---------------------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEE
T ss_pred CCCCCeEE-ccC--Cceecccc--------cCC------cceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEE
Confidence 67777442 212 22222221 012 45566789999999999999964 999999999999999
Q ss_pred CCC
Q 001042 1174 ATI 1176 (1178)
Q Consensus 1174 v~t 1176 (1178)
+.-
T Consensus 515 l~~ 517 (524)
T 2j04_B 515 LSL 517 (524)
T ss_dssp CSC
T ss_pred ccc
Confidence 863
No 56
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=8.9e-33 Score=357.20 Aligned_cols=340 Identities=17% Similarity=0.303 Sum_probs=285.1
Q ss_pred ceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEE--EecCCCEE
Q 001042 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKV 896 (1178)
Q Consensus 819 ~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~--~s~d~~~l 896 (1178)
..+.+.+|++.|++++|+ |++++||+|+.||.|++||+. .......+.+|...|.+ |+|++++|
T Consensus 5 ~~~~~~~h~~~v~~i~~s------------p~~~~la~~~~~g~v~iwd~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l 70 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFH------------PTEPWVLTTLYSGRVEIWNYE--TQVEVRSIQVTETPVRAGKFIARKNWI 70 (814)
T ss_dssp CEEEEEEECSCEEEEEEC------------SSSSEEEEEETTSEEEEEETT--TTEEEEEEECCSSCEEEEEEEGGGTEE
T ss_pred cceeeecCCCceEEEEEC------------CCCCEEEEEeCCCEEEEEECC--CCceEEEEecCCCcEEEEEEeCCCCEE
Confidence 567899999999999998 899999999999999999976 56677888899999985 58999999
Q ss_pred EEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCC-eEEEEecCCCCCEEEEEEeC
Q 001042 897 VSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTD-TCVATVGRCSSAVLCMEYDD 974 (1178)
Q Consensus 897 ~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~-~~~~~~~~~~~~I~~l~~sp 974 (1178)
++|+.||.|++||+.+++.+..+.+|...|++++|+ ++..+++|+.||+|++||+.++ .....+..|...|.+++|+|
T Consensus 71 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p 150 (814)
T 3mkq_A 71 IVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNP 150 (814)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEET
T ss_pred EEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEc
Confidence 999999999999999999999999999999999999 6778999999999999999987 77778888999999999999
Q ss_pred -CCCEEEEEeCCCeEEEEECCCCceEEEEecCC-ccEEEEEEc----CCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCc
Q 001042 975 -STGILAAGGRDAVANIWDIRAGRQMHKFLGHT-KWIRSIRMD----RDTVITGSDDWTARMWSISRGTCDAVLACHAGP 1048 (1178)
Q Consensus 975 -~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~-~~v~~l~~~----~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~ 1048 (1178)
+++.+++++.||.|++||+++++....+..+. ..+.+++|+ +..+++++.||.|++||+.+++.+..+.+|.+.
T Consensus 151 ~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~ 230 (814)
T 3mkq_A 151 KDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSN 230 (814)
T ss_dssp TEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCC
Confidence 88999999999999999999988877776655 789999984 459999999999999999999999999999999
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE--ecCCC--EEEEEeCCCcEEEEEcCCCccc-
Q 001042 1049 VQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI--NAGDH--WLGIGAADNSMSLFHRPQERLG- 1123 (1178)
Q Consensus 1049 I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~dg~--~Lasgs~Dg~I~iwd~~~~~~~- 1123 (1178)
|++++|+|+++++++|+.||.|++||+.++ .....+..|...+.++ +|++. ++++| .|+.+.+|++......
T Consensus 231 v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 307 (814)
T 3mkq_A 231 VSFAVFHPTLPIIISGSEDGTLKIWNSSTY--KVEKTLNVGLERSWCIATHPTGRKNYIASG-FDNGFTVLSLGNDEPTL 307 (814)
T ss_dssp EEEEEECSSSSEEEEEETTSCEEEEETTTC--SEEEEECCSSSSEEEEEECTTCGGGEEEEE-ETTEEEEEECSCCSCCE
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCC--cEEEEeecCCCcEEEEEEccCCCceEEEEE-eCCCEEEEEcCCCCcee
Confidence 999999999999999999999999999988 5677778888888776 67876 45555 5677889987643221
Q ss_pred cccCCCCCcc---------c---------e---------eEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001042 1124 GFSGTGSKMS---------G---------W---------QLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATI 1176 (1178)
Q Consensus 1124 ~~~~~g~~~~---------~---------~---------~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~t 1176 (1178)
.+.+.|..+. . | ........+...+++++|+|||++|++++ ||.+.+|++..
T Consensus 308 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~ 386 (814)
T 3mkq_A 308 SLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALA 386 (814)
T ss_dssp EECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTT
T ss_pred EECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECcc
Confidence 1111111000 0 0 00111234555678888888888888887 88888888653
No 57
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.8e-33 Score=333.89 Aligned_cols=312 Identities=16% Similarity=0.228 Sum_probs=257.9
Q ss_pred EEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceeccccccC
Q 001042 772 VQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDRE 849 (1178)
Q Consensus 772 ~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~ 849 (1178)
.+++|||||+++++++.| |++||+.++. ....+.+| ..+....|+ +
T Consensus 60 ~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~-------------------~~~~~~~~-~~~~~~~~~------------~ 107 (420)
T 3vl1_A 60 KGNTFEKVGSHLYKARLDGHDFLFNTIIRD-------------------GSKMLKRA-DYTAVDTAK------------L 107 (420)
T ss_dssp TTCEEEEEETTEEEEEETTEEEEEECCSEE-------------------TTTTSCSC-CEEEEEEEC------------S
T ss_pred cceeeeecCCeEEEEEcCCcEEEEEecccc-------------------eeeEEecC-CceEEEEEe------------c
Confidence 357999999999999988 9999998776 23344555 333333444 8
Q ss_pred CCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEE--EecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceE
Q 001042 850 DAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVS 927 (1178)
Q Consensus 850 d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~ 927 (1178)
++++|++|+.||.|++||+. .......+.+|...|.+ ++|++++|++|+.||.|++||+.+++.+..+.+|...|.
T Consensus 108 ~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~ 185 (420)
T 3vl1_A 108 QMRRFILGTTEGDIKVLDSN--FNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVT 185 (420)
T ss_dssp SSCEEEEEETTSCEEEECTT--SCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEE
T ss_pred CCCEEEEEECCCCEEEEeCC--CcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEE
Confidence 99999999999999999976 55666777899999986 589999999999999999999999999999999999999
Q ss_pred EEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecC---CCCCEEEEE---------------------EeCCCCEEEEE
Q 001042 928 CVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGR---CSSAVLCME---------------------YDDSTGILAAG 982 (1178)
Q Consensus 928 ~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~---~~~~I~~l~---------------------~sp~~~~l~sg 982 (1178)
+++|+ ++..+++|+.||+|++||+++++.+..+.. +...+.+++ |+|+++++++|
T Consensus 186 ~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 265 (420)
T 3vl1_A 186 DIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAG 265 (420)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEE
T ss_pred EEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEE
Confidence 99999 788999999999999999999999988864 344455554 57889999999
Q ss_pred eCCCeEEEEECCCCceEEEEe-cCCccEEEEEEcCC---EEEEEeCCCcEEEEEcCCCee-eeEecc-CCCcEEEEEEec
Q 001042 983 GRDAVANIWDIRAGRQMHKFL-GHTKWIRSIRMDRD---TVITGSDDWTARMWSISRGTC-DAVLAC-HAGPVQCVEYSS 1056 (1178)
Q Consensus 983 s~dg~I~lwD~~~~~~~~~~~-~~~~~v~~l~~~~~---~l~sgs~dg~I~iwd~~~~~~-~~~~~~-h~~~I~~l~~sp 1056 (1178)
+.||.|++||+++++.+..+. .|...|.+++|+++ ++++|+.||.|++||+++++. +..+.. |...|+++.+ +
T Consensus 266 ~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~ 344 (420)
T 3vl1_A 266 HVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-A 344 (420)
T ss_dssp ETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-E
T ss_pred cCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-C
Confidence 999999999999998877765 47889999999654 899999999999999998754 677776 6677888855 5
Q ss_pred CCCEEEEEeCCCcEEEEECCCCce-------EEEEEecccCCcEEE--EecCCC---EEEEEeCCCcEEEEEcC
Q 001042 1057 SDRGIITGSSDGLLRFWENDDGGI-------KCVKNVTIHSSAILS--INAGDH---WLGIGAADNSMSLFHRP 1118 (1178)
Q Consensus 1057 dg~~L~sgs~Dg~I~iwd~~~~~~-------~~~~~~~~h~~~i~~--is~dg~---~Lasgs~Dg~I~iwd~~ 1118 (1178)
++++|++++.||.|++|++.+... .....+..|...+.+ ++|++. .+++++.+|.+.+|+++
T Consensus 345 ~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 345 AGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp TTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred CCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence 788999999999999999886311 112234456666644 479998 77777889999999986
No 58
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.2e-33 Score=326.66 Aligned_cols=324 Identities=16% Similarity=0.193 Sum_probs=258.2
Q ss_pred EecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEE--EecCCCEEEEE
Q 001042 822 IIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSG 899 (1178)
Q Consensus 822 ~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~--~s~d~~~l~sg 899 (1178)
.+..|.++|++++|+ |++++|++|+.||.|++||+..........+.+|...|.+ +++++++++++
T Consensus 3 ~~~~~~~~i~~~~~s------------~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 70 (372)
T 1k8k_C 3 YHSFLVEPISCHAWN------------KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 70 (372)
T ss_dssp EEESCSSCCCEEEEC------------TTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEE
T ss_pred eecccCCCeEEEEEC------------CCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEE
Confidence 355699999999998 8999999999999999999763323377888899999985 58999999999
Q ss_pred eCCCcEEEEECCCCcEEEE--ecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeE---E-EEecCCCCCEEEEEE
Q 001042 900 SDDQSVLVWDKQTSQLLEE--LKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTC---V-ATVGRCSSAVLCMEY 972 (1178)
Q Consensus 900 s~dg~I~iwd~~t~~~~~~--l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~---~-~~~~~~~~~I~~l~~ 972 (1178)
+.||.|++||+.+++.... +..|...|.+++|+ ++..+++|+.||.|++||++++.. . .....|...|.+++|
T Consensus 71 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~ 150 (372)
T 1k8k_C 71 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDW 150 (372)
T ss_dssp ETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEE
T ss_pred cCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEE
Confidence 9999999999998875544 46799999999999 788999999999999999988762 3 333567899999999
Q ss_pred eCCCCEEEEEeCCCeEEEEEC------------------CCCceEEEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEE
Q 001042 973 DDSTGILAAGGRDAVANIWDI------------------RAGRQMHKFLGHTKWIRSIRMD--RDTVITGSDDWTARMWS 1032 (1178)
Q Consensus 973 sp~~~~l~sgs~dg~I~lwD~------------------~~~~~~~~~~~~~~~v~~l~~~--~~~l~sgs~dg~I~iwd 1032 (1178)
+|+++++++|+.||.|++||+ .+++.+..+..|...|.+++|+ ++++++++.||.|++||
T Consensus 151 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d 230 (372)
T 1k8k_C 151 HPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLAD 230 (372)
T ss_dssp CTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred cCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 999999999999999999995 4678888898999999999995 45999999999999999
Q ss_pred cCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCC--CceEEEEEecccCCcEEEEecCCCEEEEEeCCC
Q 001042 1033 ISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDD--GGIKCVKNVTIHSSAILSINAGDHWLGIGAADN 1110 (1178)
Q Consensus 1033 ~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~--~~~~~~~~~~~h~~~i~~is~dg~~Lasgs~Dg 1110 (1178)
+++++.+..+..|...|++++|+|+++++++| .||.|++|++.+ +.......+..+... ..+...
T Consensus 231 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~ 297 (372)
T 1k8k_C 231 ADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQS------------SQRGLT 297 (372)
T ss_dssp GGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------------------C
T ss_pred CCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccc------------hhhhcc
Confidence 99999999999999999999999999988887 899999999988 644444443332221 122234
Q ss_pred cEEEEEcCCCccccccCCCCCccceeE-eeccCCCcccEEEEEEc-CCC---CEEEEEeCCCcEEEEECCCC
Q 001042 1111 SMSLFHRPQERLGGFSGTGSKMSGWQL-YRTPQKTVAVVRCIASD-LER---KRICSGGRNGLLRLWEATIN 1177 (1178)
Q Consensus 1111 ~I~iwd~~~~~~~~~~~~g~~~~~~~~-~~~~~~h~~~V~~lafs-pdg---~~Las~s~Dg~V~IWdv~tg 1177 (1178)
.+++|..... .+.....-.. .....+|...|++++|+ ++| ++|+||+.||.|++||+.++
T Consensus 298 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~ 362 (372)
T 1k8k_C 298 ARERFQNLDK-------KASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 362 (372)
T ss_dssp HHHHHHHCCC-------CC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred hhhhhhhccc-------ccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence 5666621110 1100000000 12234899999999966 677 99999999999999998653
No 59
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=9.4e-33 Score=330.20 Aligned_cols=286 Identities=23% Similarity=0.448 Sum_probs=254.6
Q ss_pred EeecccccceEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeE
Q 001042 877 ATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTC 956 (1178)
Q Consensus 877 ~~l~~h~~~V~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~ 956 (1178)
....+|...|.+++.+++++++|+.||.|++||+.+++....+.+|...|.+++| +++.+++|+.||+|++||+.+++.
T Consensus 127 ~~~~~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~-~~~~l~sg~~dg~i~vwd~~~~~~ 205 (435)
T 1p22_A 127 HCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY-DERVIITGSSDSTVRVWDVNTGEM 205 (435)
T ss_dssp ECCCSSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC-CSSEEEEEETTSCEEEEESSSCCE
T ss_pred ecccCCCCcEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE-CCCEEEEEcCCCeEEEEECCCCcE
Confidence 3345677889999999999999999999999999999999999999999999999 788999999999999999999999
Q ss_pred EEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceE---EEEecCCccEEEEEEcCCEEEEEeCCCcEEEEEc
Q 001042 957 VATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQM---HKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSI 1033 (1178)
Q Consensus 957 ~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~---~~~~~~~~~v~~l~~~~~~l~sgs~dg~I~iwd~ 1033 (1178)
+..+..|...|.+++|+ +..+++|+.||.|++||+++++.. ..+.+|...|.+++++++++++|+.||.|++||+
T Consensus 206 ~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~ 283 (435)
T 1p22_A 206 LNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNT 283 (435)
T ss_dssp EEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEET
T ss_pred EEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEEC
Confidence 99999999999999997 458999999999999999988765 6678899999999999999999999999999999
Q ss_pred CCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEEecCCCEEEEEeCCCcEE
Q 001042 1034 SRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSINAGDHWLGIGAADNSMS 1113 (1178)
Q Consensus 1034 ~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~Lasgs~Dg~I~ 1113 (1178)
++++.+..+.+|...|.++.++ ++++++|+.||.|++||+.++ .++..+.+|...|.++..++.++++|+.||.|+
T Consensus 284 ~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~ 359 (435)
T 1p22_A 284 STCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG--ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIK 359 (435)
T ss_dssp TTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTC--CEEEEECCCSSCEEEEECCSSEEEEEETTSCEE
T ss_pred CcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCC--CEEEEEeCCcCcEEEEEecCCEEEEEeCCCcEE
Confidence 9999999999999999999995 789999999999999999998 678888999999999999999999999999999
Q ss_pred EEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001042 1114 LFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATIN 1177 (1178)
Q Consensus 1114 iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~tg 1177 (1178)
+||+.++.... ......+...+.+|.+.|++++| ++++|++|+.||+|++||+.++
T Consensus 360 vwd~~~~~~~~------~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 360 VWDLVAALDPR------APAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLND 415 (435)
T ss_dssp EEEHHHHTSTT------SCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC----
T ss_pred EEECCCCCCcc------ccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCC
Confidence 99986432110 00111256677899999999999 7889999999999999999764
No 60
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-32 Score=313.03 Aligned_cols=285 Identities=20% Similarity=0.281 Sum_probs=251.5
Q ss_pred eeeEeecccccceEE--EecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEe
Q 001042 874 ELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWD 950 (1178)
Q Consensus 874 ~~~~~l~~h~~~V~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd 950 (1178)
.....+.+|...|.+ ++++++++++|+.||.|++||+.+++.+..+.+|...|.+++|+ +++.+++++.||.|++||
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 102 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWD 102 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 344678899999996 58999999999999999999999999999999999999999999 688999999999999999
Q ss_pred CCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCc-----------eEEEEecCCc--cEEEE
Q 001042 951 VRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRD-----AVANIWDIRAGR-----------QMHKFLGHTK--WIRSI 1012 (1178)
Q Consensus 951 ~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~d-----g~I~lwD~~~~~-----------~~~~~~~~~~--~v~~l 1012 (1178)
+.+++.+..+. +...+.+++|+|+++.+++++.+ |.|.+||+.++. ....+..|.. .+.++
T Consensus 103 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (369)
T 3zwl_B 103 VSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVA 181 (369)
T ss_dssp TTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEE
T ss_pred CCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEE
Confidence 99999988886 78899999999999999999999 999999998654 3444556666 89999
Q ss_pred EEc--CCEEEEEeCCCcEEEEEcCC-CeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEeccc
Q 001042 1013 RMD--RDTVITGSDDWTARMWSISR-GTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIH 1089 (1178)
Q Consensus 1013 ~~~--~~~l~sgs~dg~I~iwd~~~-~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h 1089 (1178)
+|+ ++.+++++.||.|++||+++ ++....+..|...|.+++|+|++++|++++.||.|++||+.+++ ....+. +
T Consensus 182 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~--~~~~~~-~ 258 (369)
T 3zwl_B 182 GWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQ--VLKKYE-T 258 (369)
T ss_dssp EECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC--EEEEEE-C
T ss_pred EEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCc--eeeeec-C
Confidence 994 55999999999999999998 78888999999999999999999999999999999999999984 444444 5
Q ss_pred CCcEEE--EecCCCEEEEEeCCC--------------cEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEE
Q 001042 1090 SSAILS--INAGDHWLGIGAADN--------------SMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIAS 1153 (1178)
Q Consensus 1090 ~~~i~~--is~dg~~Lasgs~Dg--------------~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~laf 1153 (1178)
...+.+ ++|+++++++++.++ .+++||..++ +....+.+|...|++++|
T Consensus 259 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~---------------~~~~~~~~~~~~v~~~~~ 323 (369)
T 3zwl_B 259 DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE---------------EEIGRVQGHFGPLNTVAI 323 (369)
T ss_dssp SSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTC---------------CEEEEEECCSSCEEEEEE
T ss_pred CCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC---------------cchhheecccCcEEEEEE
Confidence 555544 489999999999998 7999998743 455666789999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCC
Q 001042 1154 DLERKRICSGGRNGLLRLWEATIN 1177 (1178)
Q Consensus 1154 spdg~~Las~s~Dg~V~IWdv~tg 1177 (1178)
+|+|++|++++.||.|++|+++++
T Consensus 324 s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 324 SPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp CTTSSEEEEEETTSEEEEEEECHH
T ss_pred CCCCCEEEEEcCCCeEEEEECccc
Confidence 999999999999999999998753
No 61
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=6.9e-33 Score=325.91 Aligned_cols=287 Identities=14% Similarity=0.199 Sum_probs=250.3
Q ss_pred eeEeecccccceEEEecCCCEEEEEeCCCcEEEEECCCCc------EEEEecCCCCceEEEEEe-C----C---CeEEEE
Q 001042 875 LRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQ------LLEELKGHDAQVSCVRML-S----G---ERVLTA 940 (1178)
Q Consensus 875 ~~~~l~~h~~~V~~~s~d~~~l~sgs~dg~I~iwd~~t~~------~~~~l~~h~~~V~~l~~~-~----~---~~l~sg 940 (1178)
....+.+|...|.++..+.++|++|+.||.|++||+.+++ .+..+.+|...|.+++|+ + + ..++++
T Consensus 8 ~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~ 87 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT 87 (397)
T ss_dssp EEEESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred hhhhhhhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEE
Confidence 4567889999999886666999999999999999999988 788889999999999999 5 6 799999
Q ss_pred eCCCeEEEEeCCCCeE-----EEEecCC-----CCCEEEEEEe----CCCCE-EEEEeCCCeEEEEECCC------CceE
Q 001042 941 SHDGTVKMWDVRTDTC-----VATVGRC-----SSAVLCMEYD----DSTGI-LAAGGRDAVANIWDIRA------GRQM 999 (1178)
Q Consensus 941 s~dg~V~iwd~~~~~~-----~~~~~~~-----~~~I~~l~~s----p~~~~-l~sgs~dg~I~lwD~~~------~~~~ 999 (1178)
+.||.|++||+.+++. ...+..+ ...|.+++|+ |+++. +++++.||.|++||+++ ++.+
T Consensus 88 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 167 (397)
T 1sq9_A 88 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL 167 (397)
T ss_dssp ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred cCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccccee
Confidence 9999999999998886 7888888 5899999999 99999 99999999999999998 6666
Q ss_pred E-----EEe-------cCCccEEEEEEcCC-EEEEEeCCCcEEEEEcCCCeeeeEecc---C---CCcEEEEEEecCCCE
Q 001042 1000 H-----KFL-------GHTKWIRSIRMDRD-TVITGSDDWTARMWSISRGTCDAVLAC---H---AGPVQCVEYSSSDRG 1060 (1178)
Q Consensus 1000 ~-----~~~-------~~~~~v~~l~~~~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~---h---~~~I~~l~~spdg~~ 1060 (1178)
. .+. .|...|.+++|+++ .+++++.||.|++||+++++.+..+.. | ...|++++|+|++++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~ 247 (397)
T 1sq9_A 168 NWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSL 247 (397)
T ss_dssp CCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTE
T ss_pred eccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCE
Confidence 5 664 48889999999544 999999999999999999999999998 8 999999999999999
Q ss_pred EEEEeCC---CcEEEEECCCCceEEEEEecc-------------cCCcEEEE--ecCCCEEEEEeCCCcEEEEEcCCCcc
Q 001042 1061 IITGSSD---GLLRFWENDDGGIKCVKNVTI-------------HSSAILSI--NAGDHWLGIGAADNSMSLFHRPQERL 1122 (1178)
Q Consensus 1061 L~sgs~D---g~I~iwd~~~~~~~~~~~~~~-------------h~~~i~~i--s~dg~~Lasgs~Dg~I~iwd~~~~~~ 1122 (1178)
|++++.| |.|++||+.++ ..+..+.+ |...|.++ +|++++|++|+.||.|++||+.++
T Consensus 248 l~~~~~d~~~g~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-- 323 (397)
T 1sq9_A 248 LAIAHDSNSFGCITLYETEFG--ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK-- 323 (397)
T ss_dssp EEEEEEETTEEEEEEEETTTC--CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT--
T ss_pred EEEEecCCCCceEEEEECCCC--cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC--
Confidence 9999999 99999999988 56777777 88888776 789999999999999999999743
Q ss_pred ccccCCCCCccceeEeeccC------CC---------------cccEEEEEEcCCC----------CEEEEEeCCCcEEE
Q 001042 1123 GGFSGTGSKMSGWQLYRTPQ------KT---------------VAVVRCIASDLER----------KRICSGGRNGLLRL 1171 (1178)
Q Consensus 1123 ~~~~~~g~~~~~~~~~~~~~------~h---------------~~~V~~lafspdg----------~~Las~s~Dg~V~I 1171 (1178)
+....+. +| ...|++++|+|+| ++|++|+.||.|++
T Consensus 324 -------------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~i 390 (397)
T 1sq9_A 324 -------------ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRW 390 (397)
T ss_dssp -------------EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEE
T ss_pred -------------ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEE
Confidence 3333333 45 8999999999999 79999999999999
Q ss_pred EECCCCC
Q 001042 1172 WEATINI 1178 (1178)
Q Consensus 1172 Wdv~tg~ 1178 (1178)
|++.+|+
T Consensus 391 w~~~~g~ 397 (397)
T 1sq9_A 391 FREAGGK 397 (397)
T ss_dssp EEEEC--
T ss_pred EEcCCCC
Confidence 9999885
No 62
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=5.2e-32 Score=343.86 Aligned_cols=306 Identities=18% Similarity=0.363 Sum_probs=249.0
Q ss_pred eEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCC---ceeeEeecccccceEE--EecCCC
Q 001042 820 IRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRG---SELRATLKGHTRTVRA--INSDRG 894 (1178)
Q Consensus 820 ~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~---~~~~~~l~~h~~~V~~--~s~d~~ 894 (1178)
...+++|++.|++|+|++ .++++|+||+.||+|++||+.... ......+.+|...|.+ ++++++
T Consensus 375 ~~~l~~H~~~V~~v~~~~-----------~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~ 443 (694)
T 3dm0_A 375 KGTMRAHTDMVTAIATPI-----------DNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQ 443 (694)
T ss_dssp EEEEECCSSCEEEEECCT-----------TCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSS
T ss_pred hhhcccCCceeEEEEecC-----------CCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCC
Confidence 456899999999999983 346899999999999999986432 2345678999999985 589999
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEe---cCCCCCEEEE
Q 001042 895 KVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATV---GRCSSAVLCM 970 (1178)
Q Consensus 895 ~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~---~~~~~~I~~l 970 (1178)
+|++|+.||+|++||+.+++....+.+|...|.+++|+ ++..+++|+.||+|++||.......... .+|...|.++
T Consensus 444 ~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~ 523 (694)
T 3dm0_A 444 FALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCV 523 (694)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEE
T ss_pred EEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEE
Confidence 99999999999999999999999999999999999999 7889999999999999998765444332 3577889999
Q ss_pred EEeCCC--CEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCeeeeEeccCC
Q 001042 971 EYDDST--GILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMD--RDTVITGSDDWTARMWSISRGTCDAVLACHA 1046 (1178)
Q Consensus 971 ~~sp~~--~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~ 1046 (1178)
+|+|++ ..+++|+.||.|++||+++++....+.+|.+.|++++++ ++++++|+.||.|++||+++++.+..+. +.
T Consensus 524 ~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~ 602 (694)
T 3dm0_A 524 RFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE-AN 602 (694)
T ss_dssp EECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB-CS
T ss_pred EEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec-CC
Confidence 999986 589999999999999999999999999999999999995 4599999999999999999999888776 45
Q ss_pred CcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEEecCCCEEEEEeCCCcEEEEEcCCCcccccc
Q 001042 1047 GPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRPQERLGGFS 1126 (1178)
Q Consensus 1047 ~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~ 1126 (1178)
..|.+++|+|++.++++++ |+.|++||+.++ ..+..+..+....... .+.
T Consensus 603 ~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~--~~~~~~~~~~~~~~~~------------------~~~--------- 652 (694)
T 3dm0_A 603 SVIHALCFSPNRYWLCAAT-EHGIKIWDLESK--SIVEDLKVDLKAEAEK------------------ADN--------- 652 (694)
T ss_dssp SCEEEEEECSSSSEEEEEE-TTEEEEEETTTT--EEEEEECCCCC-----------------------------------
T ss_pred CcEEEEEEcCCCcEEEEEc-CCCEEEEECCCC--CChhhhcccccccccc------------------ccc---------
Confidence 6899999999998887775 566999999988 5555544332211000 000
Q ss_pred CCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001042 1127 GTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATI 1176 (1178)
Q Consensus 1127 ~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~t 1176 (1178)
.+ ......+...+++++|+|||++|+||+.||+|+||++..
T Consensus 653 -~~--------~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 653 -SG--------PAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp -----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred -cc--------cccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence 00 000112334588999999999999999999999999863
No 63
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-32 Score=307.82 Aligned_cols=282 Identities=23% Similarity=0.383 Sum_probs=255.4
Q ss_pred cccccCCcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeecc
Q 001042 762 AEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKR 839 (1178)
Q Consensus 762 ~~~~gh~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~ 839 (1178)
..+.+|...|.+++| |||+++++++.| |++||+.++. ....+.+|.+.|.+++|+
T Consensus 12 ~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~-------------------~~~~~~~~~~~v~~~~~~--- 68 (313)
T 3odt_A 12 ATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQW-------------------LGTVVYTGQGFLNSVCYD--- 68 (313)
T ss_dssp EEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSE-------------------EEEEEEECSSCEEEEEEE---
T ss_pred HHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCE-------------------EEEEeecCCccEEEEEEC---
Confidence 446789999999999 999999999988 9999998766 678889999999999998
Q ss_pred ceeccccccCCCCEEEEEeCCCcEEEEcCCCC-CceeeEeecccccceEEEecCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 001042 840 EVWDLVGDREDAGFFISGSTDCLVKIWDPSLR-GSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEE 918 (1178)
Q Consensus 840 ~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~-~~~~~~~l~~h~~~V~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~ 918 (1178)
|+++++++|+.||.|++|++... .......+.+|...|.++..+++.+++++.||.|++|| .++....
T Consensus 69 ---------~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~~~~~~ 137 (313)
T 3odt_A 69 ---------SEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EGSLVYN 137 (313)
T ss_dssp ---------TTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE--TTEEEEE
T ss_pred ---------CCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc--CCcEEEe
Confidence 89999999999999999998632 23456778899999999988999999999999999999 6788889
Q ss_pred ecCCCCceEEEEEe--CCCeEEEEeCCCeEEEEeCCCCeEEEEecC-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Q 001042 919 LKGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTDTCVATVGR-CSSAVLCMEYDDSTGILAAGGRDAVANIWDIRA 995 (1178)
Q Consensus 919 l~~h~~~V~~l~~~--~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~-~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~ 995 (1178)
+..|...+.++.|. +++.+++++.||.|++|| .++....+.. +...+.+++|+|++. +++++.||.|++||+++
T Consensus 138 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~ 214 (313)
T 3odt_A 138 LQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHT 214 (313)
T ss_dssp EECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTT
T ss_pred cccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCc
Confidence 99999999999987 588999999999999999 5666777766 889999999999998 99999999999999999
Q ss_pred CceEEEEecCCccEEEEEEcCC-EEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEE
Q 001042 996 GRQMHKFLGHTKWIRSIRMDRD-TVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWE 1074 (1178)
Q Consensus 996 ~~~~~~~~~~~~~v~~l~~~~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd 1074 (1178)
++.+..+.+|...|.+++|+++ .+++++.||.|++||+++++....+..|...|++++|+|+++ +++++.||.|++||
T Consensus 215 ~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~ 293 (313)
T 3odt_A 215 GDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFS 293 (313)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEE
T ss_pred hhhhhhhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEe
Confidence 9999999999999999999765 899999999999999999999999999999999999999998 66789999999999
Q ss_pred CCCCceE
Q 001042 1075 NDDGGIK 1081 (1178)
Q Consensus 1075 ~~~~~~~ 1081 (1178)
+.+++..
T Consensus 294 ~~~~~~~ 300 (313)
T 3odt_A 294 QEKSRWA 300 (313)
T ss_dssp SCGGGCC
T ss_pred CCCCcee
Confidence 9987543
No 64
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.2e-32 Score=312.62 Aligned_cols=290 Identities=17% Similarity=0.286 Sum_probs=258.8
Q ss_pred CCCCCCCCcccccCCcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceE
Q 001042 754 ATNDDQQPAEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAIT 831 (1178)
Q Consensus 754 ~~~~~~~~~~~~gh~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~ 831 (1178)
..|...+...+.+|...|.+++|||||+++++++.| |++||+.+++ .+..+.+|.+.|+
T Consensus 18 ~~G~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-------------------~~~~~~~h~~~v~ 78 (369)
T 3zwl_B 18 FQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE-------------------RLGTLDGHTGTIW 78 (369)
T ss_dssp SSCCSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCC-------------------EEEEECCCSSCEE
T ss_pred EeccccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch-------------------hhhhhhhcCCcEE
Confidence 445667778889999999999999999999999988 9999998776 7888999999999
Q ss_pred EEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEE--EecCCCEEEEEeCC-----Cc
Q 001042 832 ALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDD-----QS 904 (1178)
Q Consensus 832 ~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~--~s~d~~~l~sgs~d-----g~ 904 (1178)
+++|+ +++++|++++.||.|++||+. ..+....+. |...+.+ ++++++++++++.+ |.
T Consensus 79 ~~~~~------------~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~ 143 (369)
T 3zwl_B 79 SIDVD------------CFTKYCVTGSADYSIKLWDVS--NGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGS 143 (369)
T ss_dssp EEEEC------------TTSSEEEEEETTTEEEEEETT--TCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCE
T ss_pred EEEEc------------CCCCEEEEEeCCCeEEEEECC--CCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCE
Confidence 99998 899999999999999999987 344445555 6777774 58999999999999 99
Q ss_pred EEEEECCCCc-----------EEEEecCCCC--ceEEEEEe-CCCeEEEEeCCCeEEEEeCCC-CeEEEEecCCCCCEEE
Q 001042 905 VLVWDKQTSQ-----------LLEELKGHDA--QVSCVRML-SGERVLTASHDGTVKMWDVRT-DTCVATVGRCSSAVLC 969 (1178)
Q Consensus 905 I~iwd~~t~~-----------~~~~l~~h~~--~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~-~~~~~~~~~~~~~I~~ 969 (1178)
|++||+.++. ....+..|.. .+.+++|+ ++..+++++.||.|++||+++ ++.+..+..|...|.+
T Consensus 144 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~ 223 (369)
T 3zwl_B 144 INIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISD 223 (369)
T ss_dssp EEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEE
T ss_pred EEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeE
Confidence 9999987653 3445556666 99999999 788999999999999999999 7888889899999999
Q ss_pred EEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEc--CCEEEEEeCCC--------------cEEEEEc
Q 001042 970 MEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMD--RDTVITGSDDW--------------TARMWSI 1033 (1178)
Q Consensus 970 l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sgs~dg--------------~I~iwd~ 1033 (1178)
++|+|+++++++++.||.|++||+++++.+..+. +...+.+++++ +..+++++.++ .+++||.
T Consensus 224 ~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~ 302 (369)
T 3zwl_B 224 MQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHK 302 (369)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEET
T ss_pred EEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEec
Confidence 9999999999999999999999999999988886 77889999995 45899999888 8999999
Q ss_pred CCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 001042 1034 SRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDG 1078 (1178)
Q Consensus 1034 ~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~ 1078 (1178)
.+++.+..+.+|.+.|++++|+|++++|++|+.||.|++|++.++
T Consensus 303 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 303 IFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp TTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred CCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 999999999999999999999999999999999999999999865
No 65
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=3.4e-32 Score=325.29 Aligned_cols=280 Identities=24% Similarity=0.473 Sum_probs=253.2
Q ss_pred eEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEE
Q 001042 820 IRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSG 899 (1178)
Q Consensus 820 ~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sg 899 (1178)
+....+|...|+++++ +++++++|+.||+|++||+. ..+....+.+|...|.++..+++.+++|
T Consensus 126 ~~~~~~~~~~v~~~~~--------------d~~~l~~g~~dg~i~iwd~~--~~~~~~~~~~h~~~v~~l~~~~~~l~sg 189 (435)
T 1p22_A 126 IHCRSETSKGVYCLQY--------------DDQKIVSGLRDNTIKIWDKN--TLECKRILTGHTGSVLCLQYDERVIITG 189 (435)
T ss_dssp EECCCSSCCCEEEEEC--------------CSSEEEEEESSSCEEEEESS--SCCEEEEECCCSSCEEEEECCSSEEEEE
T ss_pred EecccCCCCcEEEEEE--------------CCCEEEEEeCCCeEEEEeCC--CCeEEEEEcCCCCcEEEEEECCCEEEEE
Confidence 4445578888998874 68999999999999999976 5667788999999999999999999999
Q ss_pred eCCCcEEEEECCCCcEEEEecCCCCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEE---EEecCCCCCEEEEEEeCCC
Q 001042 900 SDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCV---ATVGRCSSAVLCMEYDDST 976 (1178)
Q Consensus 900 s~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~---~~~~~~~~~I~~l~~sp~~ 976 (1178)
+.||+|++||+.+++.+..+.+|...|.+++|+ ++.+++|+.||+|++||+.++... ..+.+|...|.++++ ++
T Consensus 190 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~ 266 (435)
T 1p22_A 190 SSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN-NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DD 266 (435)
T ss_dssp ETTSCEEEEESSSCCEEEEECCCCSCEEEEECC-TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ET
T ss_pred cCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc-CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CC
Confidence 999999999999999999999999999999996 568999999999999999987654 667789999999999 78
Q ss_pred CEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEcCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEec
Q 001042 977 GILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSS 1056 (1178)
Q Consensus 977 ~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp 1056 (1178)
+.+++|+.||.|++||+++++.+..+.+|...|.+++++++.+++|+.||.|++||+++++++..+.+|...|++++|
T Consensus 267 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~-- 344 (435)
T 1p22_A 267 KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF-- 344 (435)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--
T ss_pred CEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCce-------EEEEEecccCCcEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 001042 1057 SDRGIITGSSDGLLRFWENDDGGI-------KCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRPQE 1120 (1178)
Q Consensus 1057 dg~~L~sgs~Dg~I~iwd~~~~~~-------~~~~~~~~h~~~i~~is~dg~~Lasgs~Dg~I~iwd~~~~ 1120 (1178)
+++++++|+.||.|++||+.++.. .++..+.+|...|.++..++.++++|+.||+|++||+.+.
T Consensus 345 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 345 DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLND 415 (435)
T ss_dssp CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC----
T ss_pred cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeCCCEEEEEeCCCEEEEEECCCC
Confidence 689999999999999999876521 1678889999999999889999999999999999999743
No 66
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=5.4e-32 Score=318.27 Aligned_cols=284 Identities=15% Similarity=0.231 Sum_probs=251.5
Q ss_pred ceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCC----ceeeEeecccccceEEE--ecC
Q 001042 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRG----SELRATLKGHTRTVRAI--NSD 892 (1178)
Q Consensus 819 ~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~----~~~~~~l~~h~~~V~~~--s~d 892 (1178)
..+.+.+|.++|++++|+ + ++|++|+.||+|++||+.... ......+.+|...|.++ +++
T Consensus 8 ~~~~~~~h~~~i~~~~~~------------~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 73 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSAC------------N--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQA 73 (397)
T ss_dssp EEEESSCSSSCEEEEEEC------------S--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEE
T ss_pred hhhhhhhhhcCeEEEEec------------C--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecc
Confidence 567889999999999997 5 799999999999999987333 23567888999999864 788
Q ss_pred ----C---CEEEEEeCCCcEEEEECCCCcE-----EEEecCC-----CCceEEEEEe-----CCCe-EEEEeCCCeEEEE
Q 001042 893 ----R---GKVVSGSDDQSVLVWDKQTSQL-----LEELKGH-----DAQVSCVRML-----SGER-VLTASHDGTVKMW 949 (1178)
Q Consensus 893 ----~---~~l~sgs~dg~I~iwd~~t~~~-----~~~l~~h-----~~~V~~l~~~-----~~~~-l~sgs~dg~V~iw 949 (1178)
+ ++|++++.||.|++||+.+++. ...+..| ...|.+++|+ ++.. +++++.||.|++|
T Consensus 74 ~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 153 (397)
T 1sq9_A 74 IERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIW 153 (397)
T ss_dssp EETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEE
T ss_pred cccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEE
Confidence 8 9999999999999999998887 8888888 5999999998 4677 9999999999999
Q ss_pred eCCC------CeEEE-----Ee-------cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEec---C---
Q 001042 950 DVRT------DTCVA-----TV-------GRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLG---H--- 1005 (1178)
Q Consensus 950 d~~~------~~~~~-----~~-------~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~---~--- 1005 (1178)
|+.+ ++.+. .+ ..|...|.+++|+|++ .+++|+.||.|++||+++++.+..+.. |
T Consensus 154 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~ 232 (397)
T 1sq9_A 154 KFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINN 232 (397)
T ss_dssp EEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CC
T ss_pred eCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEecccccccc
Confidence 9988 65544 55 4578899999999999 999999999999999999999999988 8
Q ss_pred CccEEEEEEc--CCEEEEEeCC---CcEEEEEcCCCeeeeEecc-------------CCCcEEEEEEecCCCEEEEEeCC
Q 001042 1006 TKWIRSIRMD--RDTVITGSDD---WTARMWSISRGTCDAVLAC-------------HAGPVQCVEYSSSDRGIITGSSD 1067 (1178)
Q Consensus 1006 ~~~v~~l~~~--~~~l~sgs~d---g~I~iwd~~~~~~~~~~~~-------------h~~~I~~l~~spdg~~L~sgs~D 1067 (1178)
...|.+++|+ ++++++++.| |.|++||+++++.+..+.+ |...|++++|+|++++|++++.|
T Consensus 233 ~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 312 (397)
T 1sq9_A 233 SNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD 312 (397)
T ss_dssp CCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETT
T ss_pred CCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCC
Confidence 9999999995 5699999999 9999999999999999998 99999999999999999999999
Q ss_pred CcEEEEECCCCceEEEEEec------cc---------------CCcEEEE--ecCC----------CEEEEEeCCCcEEE
Q 001042 1068 GLLRFWENDDGGIKCVKNVT------IH---------------SSAILSI--NAGD----------HWLGIGAADNSMSL 1114 (1178)
Q Consensus 1068 g~I~iwd~~~~~~~~~~~~~------~h---------------~~~i~~i--s~dg----------~~Lasgs~Dg~I~i 1114 (1178)
|.|++||+.++ ..+..+. +| ...|.++ ++++ ++|++|+.||.|++
T Consensus 313 g~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~i 390 (397)
T 1sq9_A 313 GKLRFWDVKTK--ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRW 390 (397)
T ss_dssp SEEEEEETTTT--EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEE
T ss_pred CeEEEEEcCCC--ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEE
Confidence 99999999998 6677777 77 8888776 7888 79999999999999
Q ss_pred EEcCC
Q 001042 1115 FHRPQ 1119 (1178)
Q Consensus 1115 wd~~~ 1119 (1178)
|++.+
T Consensus 391 w~~~~ 395 (397)
T 1sq9_A 391 FREAG 395 (397)
T ss_dssp EEEEC
T ss_pred EEcCC
Confidence 99874
No 67
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=9.1e-32 Score=311.69 Aligned_cols=287 Identities=13% Similarity=0.225 Sum_probs=243.7
Q ss_pred EeecccccceEEE--ecC----CCEEEEEeCCCcEEEEECCCCcEEEEecC-----CCCceEEEEEe-C----CCeEEEE
Q 001042 877 ATLKGHTRTVRAI--NSD----RGKVVSGSDDQSVLVWDKQTSQLLEELKG-----HDAQVSCVRML-S----GERVLTA 940 (1178)
Q Consensus 877 ~~l~~h~~~V~~~--s~d----~~~l~sgs~dg~I~iwd~~t~~~~~~l~~-----h~~~V~~l~~~-~----~~~l~sg 940 (1178)
....+|...|.++ +|+ ...+++++.++.|++||+.+++.+..+.. |...|.+++|+ + +.++++|
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 4456899999975 663 55677777788999999998887766653 56789999999 4 4689999
Q ss_pred eCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCceEEEE---ecCCccEEEEEEc-
Q 001042 941 SHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDD-STGILAAGGRDAVANIWDIRAGRQMHKF---LGHTKWIRSIRMD- 1015 (1178)
Q Consensus 941 s~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp-~~~~l~sgs~dg~I~lwD~~~~~~~~~~---~~~~~~v~~l~~~- 1015 (1178)
+.||.|++||+.+++.+..+..|...|.+++|+| +++.+++|+.||.|++||+++++.+..+ .+|...|.+++|+
T Consensus 92 ~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 171 (366)
T 3k26_A 92 GSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL 171 (366)
T ss_dssp ETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECT
T ss_pred cCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECC
Confidence 9999999999999999999999999999999999 9999999999999999999999999888 6899999999995
Q ss_pred -CCEEEEEeCCCcEEEEEcCCCeeeeEecc----------------------------CCCcEEEEEEecCCCEEEEEeC
Q 001042 1016 -RDTVITGSDDWTARMWSISRGTCDAVLAC----------------------------HAGPVQCVEYSSSDRGIITGSS 1066 (1178)
Q Consensus 1016 -~~~l~sgs~dg~I~iwd~~~~~~~~~~~~----------------------------h~~~I~~l~~spdg~~L~sgs~ 1066 (1178)
++.+++++.||.|++||+++++....+.. |...|.+++|+ ++++++++.
T Consensus 172 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~ 249 (366)
T 3k26_A 172 LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSC 249 (366)
T ss_dssp TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECS
T ss_pred CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEec
Confidence 55999999999999999998765544443 99999999999 789999999
Q ss_pred CCcEEEEECCCCce------------EEEEEecccCCcEEEE--ecC--CCEEEEEeCCCcEEEEEcCCCccccccCCCC
Q 001042 1067 DGLLRFWENDDGGI------------KCVKNVTIHSSAILSI--NAG--DHWLGIGAADNSMSLFHRPQERLGGFSGTGS 1130 (1178)
Q Consensus 1067 Dg~I~iwd~~~~~~------------~~~~~~~~h~~~i~~i--s~d--g~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~ 1130 (1178)
||.|++||+.++.. ..+..+.+|...+.++ +|+ +++|++|+.||.|++||+.+++
T Consensus 250 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~--------- 320 (366)
T 3k26_A 250 ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVED--------- 320 (366)
T ss_dssp SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSS---------
T ss_pred CCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCC---------
Confidence 99999999987643 5577788888877655 788 9999999999999999998442
Q ss_pred CccceeEeeccCCC--cccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001042 1131 KMSGWQLYRTPQKT--VAVVRCIASDLERKRICSGGRNGLLRLWEATI 1176 (1178)
Q Consensus 1131 ~~~~~~~~~~~~~h--~~~V~~lafspdg~~Las~s~Dg~V~IWdv~t 1176 (1178)
... .....+.+| ...|++++|+|++++|++|+.||.|++||+.+
T Consensus 321 ~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 321 PHK--AKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp GGG--CEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred Ccc--ccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 111 233345555 78999999999999999999999999999864
No 68
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.1e-31 Score=298.45 Aligned_cols=280 Identities=19% Similarity=0.334 Sum_probs=248.6
Q ss_pred cceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEE--EecCCCE
Q 001042 818 SNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGK 895 (1178)
Q Consensus 818 ~~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~--~s~d~~~ 895 (1178)
...+.+.+|.+.|++++| +++++|++|+.||.|++||+. .......+..|...|.+ ++++++.
T Consensus 9 ~~~~~l~~h~~~v~~~~~-------------~~~~~l~s~~~dg~v~vw~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~ 73 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-------------VDDSKVASVSRDGTVRLWSKD--DQWLGTVVYTGQGFLNSVCYDSEKEL 73 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-------------EETTEEEEEETTSEEEEEEES--SSEEEEEEEECSSCEEEEEEETTTTE
T ss_pred HHHHHhhCCCCCcEEEEe-------------cCCCEEEEEEcCCcEEEEECC--CCEEEEEeecCCccEEEEEECCCCCE
Confidence 377899999999999998 468899999999999999975 56666788889998885 5899999
Q ss_pred EEEEeCCCcEEEEECCCC---cEEEEecCCCCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEE
Q 001042 896 VVSGSDDQSVLVWDKQTS---QLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEY 972 (1178)
Q Consensus 896 l~sgs~dg~I~iwd~~t~---~~~~~l~~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~ 972 (1178)
+++|+.||.|++|++.+. +.+..+.+|...|.++.| +++.+++++.||.|++|| .++....+..|...+.++++
T Consensus 74 l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~ 150 (313)
T 3odt_A 74 LLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF-QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKV 150 (313)
T ss_dssp EEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE-ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEE
T ss_pred EEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe-cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEE
Confidence 999999999999998664 567788899999999999 678999999999999999 77888888899999999999
Q ss_pred eC-CCCEEEEEeCCCeEEEEECCCCceEEEEec-CCccEEEEEEcCC-EEEEEeCCCcEEEEEcCCCeeeeEeccCCCcE
Q 001042 973 DD-STGILAAGGRDAVANIWDIRAGRQMHKFLG-HTKWIRSIRMDRD-TVITGSDDWTARMWSISRGTCDAVLACHAGPV 1049 (1178)
Q Consensus 973 sp-~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~-~~~~v~~l~~~~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I 1049 (1178)
++ +++.+++++.||.|++|| .++....+.. |...+.+++++++ .+++++.||.|++||+++++.+..+.+|.+.|
T Consensus 151 ~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i 228 (313)
T 3odt_A 151 VSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFV 228 (313)
T ss_dssp EETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred ccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceE
Confidence 98 999999999999999999 5666777777 8899999999533 69999999999999999999999999999999
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE--ecCCCEEEEEeCCCcEEEEEcCCCc
Q 001042 1050 QCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQER 1121 (1178)
Q Consensus 1050 ~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~dg~~Lasgs~Dg~I~iwd~~~~~ 1121 (1178)
++++|+|++ .+++++.||.|++||+.++ .....+..|...+.++ +++++ +++++.||.|++||+.+++
T Consensus 229 ~~~~~~~~~-~l~~~~~dg~v~iwd~~~~--~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~ 298 (313)
T 3odt_A 229 YCIKLLPNG-DIVSCGEDRTVRIWSKENG--SLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSR 298 (313)
T ss_dssp EEEEECTTS-CEEEEETTSEEEEECTTTC--CEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGG
T ss_pred EEEEEecCC-CEEEEecCCEEEEEECCCC--ceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCc
Confidence 999999999 5899999999999999998 6677778888888766 68888 5679999999999998553
No 69
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=4.6e-32 Score=314.14 Aligned_cols=288 Identities=16% Similarity=0.229 Sum_probs=243.6
Q ss_pred EEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecc-----cccceEE--EecC-
Q 001042 821 RIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKG-----HTRTVRA--INSD- 892 (1178)
Q Consensus 821 ~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~-----h~~~V~~--~s~d- 892 (1178)
....+|.++|++++|+|... .....+++++.++.|++||+. .......+.. |...|.+ ++++
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~--------~~~~~~~~~~~~~~v~vw~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 81 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSK--------EGDPLVFATVGSNRVTLYECH--SQGEIRLLQSYVDADADENFYTCAWTYDS 81 (366)
T ss_dssp EEECTTCSCEEEEEECTTCC--------TTSCEEEEEEETTEEEEEEEC--GGGCEEEEEEEECSCTTCCEEEEEEEECT
T ss_pred EeecCCCCceEEEEEecccC--------CCCceEEEECCCCEEEEEEcC--CCcEEEeeeeccccCCCCcEEEEEeccCC
Confidence 45569999999999984100 135566677777799999976 3333344443 4566775 5777
Q ss_pred ---CCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe--CCCeEEEEeCCCeEEEEeCCCCeEEEEe---cCCC
Q 001042 893 ---RGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTDTCVATV---GRCS 964 (1178)
Q Consensus 893 ---~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~--~~~~l~sgs~dg~V~iwd~~~~~~~~~~---~~~~ 964 (1178)
+.++++|+.||.|++||+.+++.+..+.+|...|.+++|+ ++..+++|+.||.|++||+++++.+..+ ..|.
T Consensus 82 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 161 (366)
T 3k26_A 82 NTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHR 161 (366)
T ss_dssp TTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCS
T ss_pred CCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccccccc
Confidence 6799999999999999999999999999999999999998 4678999999999999999999999888 6789
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEe----------------------------cCCccEEEEEEcC
Q 001042 965 SAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFL----------------------------GHTKWIRSIRMDR 1016 (1178)
Q Consensus 965 ~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~----------------------------~~~~~v~~l~~~~ 1016 (1178)
..|.+++|+|+++.+++++.||.|++||+++++....+. .|...|.+++|++
T Consensus 162 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 241 (366)
T 3k26_A 162 DEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLG 241 (366)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEET
T ss_pred CceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcC
Confidence 999999999999999999999999999999876543333 3899999999999
Q ss_pred CEEEEEeCCCcEEEEEcCCCee--------------eeEeccCCCcEEEEEEecC--CCEEEEEeCCCcEEEEECCCCce
Q 001042 1017 DTVITGSDDWTARMWSISRGTC--------------DAVLACHAGPVQCVEYSSS--DRGIITGSSDGLLRFWENDDGGI 1080 (1178)
Q Consensus 1017 ~~l~sgs~dg~I~iwd~~~~~~--------------~~~~~~h~~~I~~l~~spd--g~~L~sgs~Dg~I~iwd~~~~~~ 1080 (1178)
+++++++.||.|++||+.++.. +..+..|...|++++|+|+ +++|++|+.||.|++||+.+++.
T Consensus 242 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~ 321 (366)
T 3k26_A 242 DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDP 321 (366)
T ss_dssp TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSG
T ss_pred CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCC
Confidence 9999999999999999987644 7778889999999999999 99999999999999999998743
Q ss_pred --EEEEEeccc--CCcEEEE--ecCCCEEEEEeCCCcEEEEEcC
Q 001042 1081 --KCVKNVTIH--SSAILSI--NAGDHWLGIGAADNSMSLFHRP 1118 (1178)
Q Consensus 1081 --~~~~~~~~h--~~~i~~i--s~dg~~Lasgs~Dg~I~iwd~~ 1118 (1178)
.....+.+| ...|.++ +|++++|++|+.||.|++||+.
T Consensus 322 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 322 HKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp GGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 244566666 6788766 7999999999999999999985
No 70
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=8.6e-32 Score=315.62 Aligned_cols=277 Identities=16% Similarity=0.196 Sum_probs=233.0
Q ss_pred ccccCCcceEEEEecCCC-Ccccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEe--cccccceEEEEeee
Q 001042 763 EASGIGRSWVQSMFSREA-SSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRII--RGHAGAITALHCVT 837 (1178)
Q Consensus 763 ~~~gh~~~i~~~aFSpdg-~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~gH~~~V~~l~fs~ 837 (1178)
...+|...|.+++|+||| +++|+|+.| |++||+.++. ....+ .+|.+.|++++|+
T Consensus 68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-------------------~~~~~~~~~h~~~v~~~~~~- 127 (383)
T 3ei3_B 68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQN-------------------KTSFIQGMGPGDAITGMKFN- 127 (383)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTT-------------------CEEEECCCSTTCBEEEEEEE-
T ss_pred eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcc-------------------cceeeecCCcCCceeEEEeC-
Confidence 356888999999999999 899999988 9999999766 33444 4799999999998
Q ss_pred ccceeccccccC-CCCEEEEEeCCCcEEEEcCCCCCceeeEeec---ccccceEE--EecCCCEEEEEeCCCcEEEEECC
Q 001042 838 KREVWDLVGDRE-DAGFFISGSTDCLVKIWDPSLRGSELRATLK---GHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQ 911 (1178)
Q Consensus 838 ~~~~~~~~~~s~-d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~---~h~~~V~~--~s~d~~~l~sgs~dg~I~iwd~~ 911 (1178)
| ++++|++|+.||.|++||+.. .....+. +|...|.+ ++++++++++|+.||.|++||+
T Consensus 128 -----------~~~~~~l~s~~~d~~i~iwd~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~- 192 (383)
T 3ei3_B 128 -----------QFNTNQLFVSSIRGATTLRDFSG---SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL- 192 (383)
T ss_dssp -----------TTEEEEEEEEETTTEEEEEETTS---CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-
T ss_pred -----------CCCCCEEEEEeCCCEEEEEECCC---CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-
Confidence 6 789999999999999999872 2333443 34466774 5899999999999999999999
Q ss_pred CCcEEEEecCCCCceEEEEEe-CCC-eEEEEeCCCeEEEEeCCC----CeEEEEecCCCCCEEEEEEeC-CCCEEEEEeC
Q 001042 912 TSQLLEELKGHDAQVSCVRML-SGE-RVLTASHDGTVKMWDVRT----DTCVATVGRCSSAVLCMEYDD-STGILAAGGR 984 (1178)
Q Consensus 912 t~~~~~~l~~h~~~V~~l~~~-~~~-~l~sgs~dg~V~iwd~~~----~~~~~~~~~~~~~I~~l~~sp-~~~~l~sgs~ 984 (1178)
+++.+..+.+|...|.+++|+ ++. .+++|+.||+|++||+++ +..+..+ .|...|.+++|+| +++++++++.
T Consensus 193 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~ 271 (383)
T 3ei3_B 193 DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQ 271 (383)
T ss_dssp TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEES
T ss_pred CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcC
Confidence 588889999999999999999 455 899999999999999998 6677766 6899999999999 9999999999
Q ss_pred CCeEEEEECCCCceEEEEecCC-----------------ccEEEEEEcCC-EEEEEeCCCcEEEEEcCCCeeeeEecc--
Q 001042 985 DAVANIWDIRAGRQMHKFLGHT-----------------KWIRSIRMDRD-TVITGSDDWTARMWSISRGTCDAVLAC-- 1044 (1178)
Q Consensus 985 dg~I~lwD~~~~~~~~~~~~~~-----------------~~v~~l~~~~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~-- 1044 (1178)
||.|++||+++++....+.+|. ..+..++++++ .+ +|+.||.|++||+.+++.+..+.+
T Consensus 272 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~ 350 (383)
T 3ei3_B 272 RNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPN 350 (383)
T ss_dssp SSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTT
T ss_pred CCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCceeeeecCCC
Confidence 9999999999988877766543 22333444322 22 777999999999999999999987
Q ss_pred CCCcEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 001042 1045 HAGPVQCVEYSSSDRGIITGSSDGLLRFWENDD 1077 (1178)
Q Consensus 1045 h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~ 1077 (1178)
|.+.+.+++|+|++++|++|+ ||.|++||+++
T Consensus 351 ~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 351 AAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp BCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 567788889999999999997 99999999875
No 71
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.3e-31 Score=309.40 Aligned_cols=283 Identities=16% Similarity=0.237 Sum_probs=239.4
Q ss_pred cccCCcceEEEEecCCCCcc-ccccc---c--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeee
Q 001042 764 ASGIGRSWVQSMFSREASSR-SHSFS---R--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVT 837 (1178)
Q Consensus 764 ~~gh~~~i~~~aFSpdg~~l-as~~~---d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~ 837 (1178)
..+|...|.+++|+|||..+ ++++. | |++||+.+++. ......+|.++|++++|+
T Consensus 14 ~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~------------------~~~~~~~~~~~v~~~~~~- 74 (357)
T 3i2n_A 14 QKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDL------------------KLLREIEKAKPIKCGTFG- 74 (357)
T ss_dssp EEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSE------------------EEEEEEEESSCEEEEECT-
T ss_pred ccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcc------------------cceeeecccCcEEEEEEc-
Confidence 36799999999999999654 55544 5 99999997661 122334899999999998
Q ss_pred ccceeccccccCC---CCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEE--------ecCCCEEEEEeCCCcEE
Q 001042 838 KREVWDLVGDRED---AGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--------NSDRGKVVSGSDDQSVL 906 (1178)
Q Consensus 838 ~~~~~~~~~~s~d---~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~--------s~d~~~l~sgs~dg~I~ 906 (1178)
++ +++|++|+.||.|++||+.. +......+.+|...|.++ +++++.+++++.||.|+
T Consensus 75 -----------~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~ 142 (357)
T 3i2n_A 75 -----------ATSLQQRYLATGDFGGNLHIWNLEA-PEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVK 142 (357)
T ss_dssp -----------TCCTTTCCEEEEETTSCEEEECTTS-CSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEE
T ss_pred -----------CCCCCCceEEEecCCCeEEEEeCCC-CCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEE
Confidence 55 79999999999999999873 333667889999999976 68899999999999999
Q ss_pred EEECCCCc-EEEEecCCCC----ceEEEE----Ee-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeC--
Q 001042 907 VWDKQTSQ-LLEELKGHDA----QVSCVR----ML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDD-- 974 (1178)
Q Consensus 907 iwd~~t~~-~~~~l~~h~~----~V~~l~----~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp-- 974 (1178)
+||+.+++ .+..+..|.+ .+.+++ |+ ++..+++++.||.|++||+++++.... ..+...|.+++|+|
T Consensus 143 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~ 221 (357)
T 3i2n_A 143 VWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKD 221 (357)
T ss_dssp EECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSS
T ss_pred EEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCC
Confidence 99999887 6777766554 899998 44 788999999999999999999987555 46788999999999
Q ss_pred -CCCEEEEEeCCCeEEEEECCCCceEEEEe-----cCCccEEEEEEcCC---EEEEEeCCCcEEEEEcCCC---------
Q 001042 975 -STGILAAGGRDAVANIWDIRAGRQMHKFL-----GHTKWIRSIRMDRD---TVITGSDDWTARMWSISRG--------- 1036 (1178)
Q Consensus 975 -~~~~l~sgs~dg~I~lwD~~~~~~~~~~~-----~~~~~v~~l~~~~~---~l~sgs~dg~I~iwd~~~~--------- 1036 (1178)
+++.+++|+.||.|++||+++++....+. +|...|.+++|+++ ++++|+.||.|++||++++
T Consensus 222 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 301 (357)
T 3i2n_A 222 ISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSE 301 (357)
T ss_dssp SSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTT
T ss_pred CCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCC
Confidence 99999999999999999998876654443 89999999999765 7999999999999999754
Q ss_pred ----------eeeeEeccCCCcEEEEEEecCCCEEE-EEeCCCcEEEEECCCC
Q 001042 1037 ----------TCDAVLACHAGPVQCVEYSSSDRGII-TGSSDGLLRFWENDDG 1078 (1178)
Q Consensus 1037 ----------~~~~~~~~h~~~I~~l~~spdg~~L~-sgs~Dg~I~iwd~~~~ 1078 (1178)
+.+..+.+|.+.|++++|+|++++|+ +|+.||.|++||+.+.
T Consensus 302 g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 302 GIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp SCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred CCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 45677888999999999999999998 8999999999999875
No 72
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.2e-31 Score=315.50 Aligned_cols=334 Identities=17% Similarity=0.203 Sum_probs=235.6
Q ss_pred cccccCCcceEEEEecC-CCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeec
Q 001042 762 AEASGIGRSWVQSMFSR-EASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTK 838 (1178)
Q Consensus 762 ~~~~gh~~~i~~~aFSp-dg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~ 838 (1178)
....+|...|.+++|+| ||+++|+++.| |++||+.++.......... ..........+|.+.|++++|+|
T Consensus 37 ~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~- 109 (408)
T 4a11_B 37 DVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKA------VCSIGRDHPDVHRYSVETVQWYP- 109 (408)
T ss_dssp EECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECE------EEEECTTCTTCCSSCEEEEEECT-
T ss_pred eeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccc------cccccccccccCCCcEEEEEEcc-
Confidence 34567999999999999 99999999988 9999999876322100000 00000011246999999999982
Q ss_pred cceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEE--Eec---CCCEEEEEeCCCcEEEEECCCC
Q 001042 839 REVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INS---DRGKVVSGSDDQSVLVWDKQTS 913 (1178)
Q Consensus 839 ~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~--~s~---d~~~l~sgs~dg~I~iwd~~t~ 913 (1178)
.++.++++|+.||.|++||+. .......+. +...+.+ +++ ++..+++++.||.|++||+.++
T Consensus 110 ----------~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 176 (408)
T 4a11_B 110 ----------HDTGMFTSSSFDKTLKVWDTN--TLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG 176 (408)
T ss_dssp ----------TCTTCEEEEETTSEEEEEETT--TTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS
T ss_pred ----------CCCcEEEEEeCCCeEEEeeCC--CCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc
Confidence 278899999999999999987 344444444 5555554 344 5669999999999999999999
Q ss_pred cEEEEecCCCCceEEEEEe-CCC-eEEEEeCCCeEEEEeCCCCe-EEEEe---------------cCCCCCEEEEEEeCC
Q 001042 914 QLLEELKGHDAQVSCVRML-SGE-RVLTASHDGTVKMWDVRTDT-CVATV---------------GRCSSAVLCMEYDDS 975 (1178)
Q Consensus 914 ~~~~~l~~h~~~V~~l~~~-~~~-~l~sgs~dg~V~iwd~~~~~-~~~~~---------------~~~~~~I~~l~~sp~ 975 (1178)
+.+..+.+|...|.+++|+ ++. .+++|+.||.|++||++++. ....+ ..|...|.+++|+|+
T Consensus 177 ~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 256 (408)
T 4a11_B 177 SCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSD 256 (408)
T ss_dssp CCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTT
T ss_pred ceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCC
Confidence 9999999999999999999 455 58899999999999998765 34443 467889999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEEecCCc------cEEEEEE-cCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCc
Q 001042 976 TGILAAGGRDAVANIWDIRAGRQMHKFLGHTK------WIRSIRM-DRDTVITGSDDWTARMWSISRGTCDAVLACHAGP 1048 (1178)
Q Consensus 976 ~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~------~v~~l~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~ 1048 (1178)
++++++++.||.|++||+++++.......+.. ....... ....+++++.|+.|++||+.+++.+..+.+|.+.
T Consensus 257 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~ 336 (408)
T 4a11_B 257 GLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKT 336 (408)
T ss_dssp SSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSC
T ss_pred CCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCe
Confidence 99999999999999999999876554432211 1111222 3457788888999999999999999999999999
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEEe-cCCCEEEEEeCCCcEEEEEcC
Q 001042 1049 VQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSIN-AGDHWLGIGAADNSMSLFHRP 1118 (1178)
Q Consensus 1049 I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is-~dg~~Lasgs~Dg~I~iwd~~ 1118 (1178)
|++++|+|++++|++|+.||.|++||+.+++ .+.....+... ..+. .......+++.|+.+++|+.+
T Consensus 337 v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 337 VDCCVFQSNFQELYSGSRDCNILAWVPSLYE--PVPDDDETTTK-SQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEEEECC------------------------------------------
T ss_pred EEEEEEcCCCCEEEEECCCCeEEEEeCCCCC--ccCCCCceEec-cccccccceeecccCccCceeecCCc
Confidence 9999999999999999999999999999883 33333222222 2232 344556667789999999875
No 73
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.2e-31 Score=338.04 Aligned_cols=284 Identities=19% Similarity=0.357 Sum_probs=242.3
Q ss_pred cccCCcceEEEEecCCC-Ccccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccc
Q 001042 764 ASGIGRSWVQSMFSREA-SSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKRE 840 (1178)
Q Consensus 764 ~~gh~~~i~~~aFSpdg-~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~ 840 (1178)
+.+|...|.+++|+|++ +++++|+.| |++|++.+.... .....+.+.+|.+.|++++|+
T Consensus 378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~--------------~~~~~~~~~~h~~~v~~v~~s---- 439 (694)
T 3dm0_A 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA--------------YGVAQRRLTGHSHFVEDVVLS---- 439 (694)
T ss_dssp EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTC--------------SCEEEEEEECCSSCEEEEEEC----
T ss_pred cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcc--------------cccccceecCCCCcEEEEEEC----
Confidence 56899999999999975 689999998 999999864421 112567899999999999998
Q ss_pred eeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEE--EecCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 001042 841 VWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLLEE 918 (1178)
Q Consensus 841 ~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~ 918 (1178)
+++++|+||+.||+|++||+. .......+.+|...|.+ ++++++++++|+.|++|++||.........
T Consensus 440 --------~~g~~l~sgs~Dg~v~vwd~~--~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~ 509 (694)
T 3dm0_A 440 --------SDGQFALSGSWDGELRLWDLA--AGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTI 509 (694)
T ss_dssp --------TTSSEEEEEETTSEEEEEETT--TTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEE
T ss_pred --------CCCCEEEEEeCCCcEEEEECC--CCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceee
Confidence 899999999999999999976 55667888999999986 589999999999999999999875543333
Q ss_pred e---cCCCCceEEEEEeCC---CeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 001042 919 L---KGHDAQVSCVRMLSG---ERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWD 992 (1178)
Q Consensus 919 l---~~h~~~V~~l~~~~~---~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD 992 (1178)
. .+|...|.+++|+++ ..+++|+.||+|++||+++++....+.+|...|.+++|+|+++++++|+.||.|++||
T Consensus 510 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd 589 (694)
T 3dm0_A 510 SEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWD 589 (694)
T ss_dssp CSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEE
T ss_pred ccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 2 468899999999943 4799999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEecCCccEEEEEEcCC-EEEEEeCCCcEEEEEcCCCeeeeEeccCC-------------------CcEEEE
Q 001042 993 IRAGRQMHKFLGHTKWIRSIRMDRD-TVITGSDDWTARMWSISRGTCDAVLACHA-------------------GPVQCV 1052 (1178)
Q Consensus 993 ~~~~~~~~~~~~~~~~v~~l~~~~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~-------------------~~I~~l 1052 (1178)
+++++.+..+. +...+.+++|+++ .+++++.++.|++||+++++.+..+..+. ..++++
T Consensus 590 ~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 668 (694)
T 3dm0_A 590 LAEGKKLYSLE-ANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSL 668 (694)
T ss_dssp TTTTEEEECCB-CSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEE
T ss_pred CCCCceEEEec-CCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeE
Confidence 99999887775 4567999999765 44555567779999999998877765321 137899
Q ss_pred EEecCCCEEEEEeCCCcEEEEECC
Q 001042 1053 EYSSSDRGIITGSSDGLLRFWEND 1076 (1178)
Q Consensus 1053 ~~spdg~~L~sgs~Dg~I~iwd~~ 1076 (1178)
+|+|+|++|++|+.||.|++|++.
T Consensus 669 ~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 669 NWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEcCCCCEEEEEcCCCeEEEEecc
Confidence 999999999999999999999985
No 74
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=4.3e-31 Score=309.64 Aligned_cols=280 Identities=14% Similarity=0.185 Sum_probs=235.5
Q ss_pred ceEEecccccceEEEEeeeccceeccccccCCC-CEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEE--ec-CCC
Q 001042 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDA-GFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NS-DRG 894 (1178)
Q Consensus 819 ~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~-~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~--s~-d~~ 894 (1178)
..+.+.+|.+.|++++|+ +++ ++|++|+.||+|++||+............+|...|.++ ++ +++
T Consensus 65 ~~~~~~~h~~~v~~~~~~------------~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 132 (383)
T 3ei3_B 65 LHRTASPFDRRVTSLEWH------------PTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTN 132 (383)
T ss_dssp EEEEECCCSSCEEEEEEC------------SSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEE
T ss_pred eEEeccCCCCCEEEEEEC------------CCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCC
Confidence 677899999999999998 788 99999999999999998744333333445799999864 77 679
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEecCC---CCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEE
Q 001042 895 KVVSGSDDQSVLVWDKQTSQLLEELKGH---DAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCM 970 (1178)
Q Consensus 895 ~l~sgs~dg~I~iwd~~t~~~~~~l~~h---~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l 970 (1178)
++++++.||.|++||+.+ +.+..+..+ ...|.+++|+ ++..+++|+.||.|++||+ +++.+..+..|...|.++
T Consensus 133 ~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~ 210 (383)
T 3ei3_B 133 QLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHA 210 (383)
T ss_dssp EEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEE
T ss_pred EEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEE
Confidence 999999999999999985 555555544 4889999999 7889999999999999999 577888888999999999
Q ss_pred EEeCCCC-EEEEEeCCCeEEEEECCC----CceEEEEecCCccEEEEEEcC---CEEEEEeCCCcEEEEEcCCCeeeeEe
Q 001042 971 EYDDSTG-ILAAGGRDAVANIWDIRA----GRQMHKFLGHTKWIRSIRMDR---DTVITGSDDWTARMWSISRGTCDAVL 1042 (1178)
Q Consensus 971 ~~sp~~~-~l~sgs~dg~I~lwD~~~----~~~~~~~~~~~~~v~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~ 1042 (1178)
+|+|+++ ++++|+.||.|++||+++ +..+..+ +|...|.+++|++ +++++++.||.|++||+++++....+
T Consensus 211 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 289 (383)
T 3ei3_B 211 EFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQI 289 (383)
T ss_dssp EECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEE
T ss_pred EECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccc
Confidence 9999999 999999999999999998 5566666 7999999999966 59999999999999999998887777
Q ss_pred ccCC-----------------CcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecc--cCCcE--EEEecCCC
Q 001042 1043 ACHA-----------------GPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTI--HSSAI--LSINAGDH 1101 (1178)
Q Consensus 1043 ~~h~-----------------~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~--h~~~i--~~is~dg~ 1101 (1178)
.+|. +.+..++|+|++++ +|+.||.|++||+.++ ..+..+.+ |...+ .+++|+++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~--~~~~~l~~~~~~~~~~~~~~s~~g~ 365 (383)
T 3ei3_B 290 IIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSG--GLVHQLRDPNAAGIISLNKFSPTGD 365 (383)
T ss_dssp EECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTC--CEEEEECBTTBCSCCCEEEECTTSS
T ss_pred ccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCC--ceeeeecCCCCCceEEEEEEecCcc
Confidence 6553 34445677777776 7789999999999998 45666665 34444 36799999
Q ss_pred EEEEEeCCCcEEEEEcC
Q 001042 1102 WLGIGAADNSMSLFHRP 1118 (1178)
Q Consensus 1102 ~Lasgs~Dg~I~iwd~~ 1118 (1178)
+|++|+ ||.|++||++
T Consensus 366 ~l~s~s-d~~i~iw~~~ 381 (383)
T 3ei3_B 366 VLASGM-GFNILIWNRE 381 (383)
T ss_dssp EEEEEE-TTEEEEEECC
T ss_pred EEEEec-CCcEEEEecC
Confidence 999997 9999999986
No 75
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=3.8e-31 Score=311.31 Aligned_cols=341 Identities=16% Similarity=0.217 Sum_probs=249.4
Q ss_pred ccccccceeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceeccccccC-CCCEEEEEeCCC
Q 001042 783 RSHSFSRVRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDRE-DAGFFISGSTDC 861 (1178)
Q Consensus 783 las~~~dI~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~-d~~~Lasgs~Dg 861 (1178)
++....++++|+.+.+. ....+.+|.+.|++++|+ | ++++|++|+.||
T Consensus 18 ~~~~~~~~~v~~~~~~~-------------------~~~~~~~h~~~v~~~~~s------------~~~~~~l~~~~~dg 66 (408)
T 4a11_B 18 LRRAESTRRVLGLELNK-------------------DRDVERIHGGGINTLDIE------------PVEGRYMLSGGSDG 66 (408)
T ss_dssp HHHHHHHHHHHTEEECT-------------------TEEECCCCSSCEEEEEEC------------TTTCCEEEEEETTS
T ss_pred eeeccCcceeeccccCc-------------------ceeeeeccCCcEEEEEEe------------cCCCCEEEEEcCCC
Confidence 33333449999998776 678899999999999998 7 999999999999
Q ss_pred cEEEEcCCCCCceeeEee-----------cccccceEEE--ec-CCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceE
Q 001042 862 LVKIWDPSLRGSELRATL-----------KGHTRTVRAI--NS-DRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVS 927 (1178)
Q Consensus 862 ~I~iWd~~~~~~~~~~~l-----------~~h~~~V~~~--s~-d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~ 927 (1178)
.|++||+........... .+|...|.++ ++ ++..+++++.||.|++||+.+++....+. +...+.
T Consensus 67 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~ 145 (408)
T 4a11_B 67 VIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVY 145 (408)
T ss_dssp CEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEE
T ss_pred eEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCcee
Confidence 999999874332222111 3588899865 67 77899999999999999999999888776 778899
Q ss_pred EEEEe----CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCc-eEEE
Q 001042 928 CVRML----SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTG-ILAAGGRDAVANIWDIRAGR-QMHK 1001 (1178)
Q Consensus 928 ~l~~~----~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~-~l~sgs~dg~I~lwD~~~~~-~~~~ 1001 (1178)
++.+. ++..+++++.||.|++||+++++.+..+..|...|.+++|+|+++ .+++|+.||.|++||++++. .+..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~ 225 (408)
T 4a11_B 146 SHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLIT 225 (408)
T ss_dssp EEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEE
T ss_pred eeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccc
Confidence 99998 234899999999999999999999999999999999999999998 58899999999999998775 3444
Q ss_pred E---------------ecCCccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCeeeeEeccCC-----CcEEEEEEecCCC
Q 001042 1002 F---------------LGHTKWIRSIRMD--RDTVITGSDDWTARMWSISRGTCDAVLACHA-----GPVQCVEYSSSDR 1059 (1178)
Q Consensus 1002 ~---------------~~~~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~-----~~I~~l~~spdg~ 1059 (1178)
+ ..|...|.+++|+ ++++++++.||.|++||+.+++.......+. ..+........+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (408)
T 4a11_B 226 LDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSS 305 (408)
T ss_dssp CCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSS
T ss_pred ccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCc
Confidence 4 5688899999995 4599999999999999999987765543321 1222222234455
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE--ecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeE
Q 001042 1060 GIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQL 1137 (1178)
Q Consensus 1060 ~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~ 1137 (1178)
.+++++.|+.|++||+.++ ..+..+.+|...|.++ +|++++|++|+.||.|++||+.+.+..
T Consensus 306 ~~~~~~~~~~i~v~d~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~-------------- 369 (408)
T 4a11_B 306 EFVFVPYGSTIAVYTVYSG--EQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPV-------------- 369 (408)
T ss_dssp CEEEEEETTEEEEEETTTC--CEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC------------------
T ss_pred eEEEEecCCEEEEEECcCC--cceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCcc--------------
Confidence 6777788999999999998 6778888999998776 899999999999999999999854321
Q ss_pred eeccCCCcccEEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 001042 1138 YRTPQKTVAVVRCIASDL-ERKRICSGGRNGLLRLWEAT 1175 (1178)
Q Consensus 1138 ~~~~~~h~~~V~~lafsp-dg~~Las~s~Dg~V~IWdv~ 1175 (1178)
.....+ -....+.+ +.....+++.|+.+++|+..
T Consensus 370 -~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 370 -PDDDET---TTKSQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp ---------------------------------------
T ss_pred -CCCCce---EeccccccccceeecccCccCceeecCCc
Confidence 111111 11122232 33445567789999999864
No 76
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=4.8e-31 Score=306.84 Aligned_cols=284 Identities=13% Similarity=0.132 Sum_probs=242.8
Q ss_pred ccCCcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeecccee
Q 001042 765 SGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVW 842 (1178)
Q Consensus 765 ~gh~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~ 842 (1178)
..|..+|.+++|+|||+++++++.+ |++||+++++. ..+..+.+|.+.|++++|+
T Consensus 5 ~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~-----------------~~~~~~~~h~~~v~~~~~~------ 61 (372)
T 1k8k_C 5 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-----------------VQVHELKEHNGQVTGVDWA------ 61 (372)
T ss_dssp ESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE-----------------EEEEEEECCSSCEEEEEEE------
T ss_pred cccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE-----------------EeeeeecCCCCcccEEEEe------
Confidence 3478899999999999999999877 99999987641 1567888999999999998
Q ss_pred ccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEE--EecCCCEEEEEeCCCcEEEEECCCCcE----E
Q 001042 843 DLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQL----L 916 (1178)
Q Consensus 843 ~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~----~ 916 (1178)
+++++|++|+.||.|++||+..........+.+|...|.+ ++++++++++++.||.|++||+.+++. .
T Consensus 62 ------~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~ 135 (372)
T 1k8k_C 62 ------PDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK 135 (372)
T ss_dssp ------TTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE
T ss_pred ------CCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeee
Confidence 8999999999999999999863333334455778888885 589999999999999999999988762 3
Q ss_pred EEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeC------------------CCCeEEEEecCCCCCEEEEEEeCCCC
Q 001042 917 EELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDV------------------RTDTCVATVGRCSSAVLCMEYDDSTG 977 (1178)
Q Consensus 917 ~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~------------------~~~~~~~~~~~~~~~I~~l~~sp~~~ 977 (1178)
.....|...|.+++|+ ++..+++|+.||.|++||+ .+++.+..+..|...|.+++|+|+++
T Consensus 136 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 215 (372)
T 1k8k_C 136 HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS 215 (372)
T ss_dssp EECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS
T ss_pred eeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCC
Confidence 3346789999999999 6789999999999999995 46788888989999999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEcCC--EEEEEeCCCcEEEEEcCC--Cee---------------
Q 001042 978 ILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISR--GTC--------------- 1038 (1178)
Q Consensus 978 ~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~--~l~sgs~dg~I~iwd~~~--~~~--------------- 1038 (1178)
++++++.||.|++||+++++.+..+..|...|.+++|+++ ++++| .||.|++||+.+ ++.
T Consensus 216 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (372)
T 1k8k_C 216 RVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQR 294 (372)
T ss_dssp EEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC------
T ss_pred EEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhh
Confidence 9999999999999999999999999999999999999643 55555 999999999987 421
Q ss_pred -----------------e------eEe-ccCCCcEEEEEEe-cCC---CEEEEEeCCCcEEEEECCCC
Q 001042 1039 -----------------D------AVL-ACHAGPVQCVEYS-SSD---RGIITGSSDGLLRFWENDDG 1078 (1178)
Q Consensus 1039 -----------------~------~~~-~~h~~~I~~l~~s-pdg---~~L~sgs~Dg~I~iwd~~~~ 1078 (1178)
. ..+ .+|.+.|++++|+ ++| ++|++|+.||.|++||+.++
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~ 362 (372)
T 1k8k_C 295 GLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 362 (372)
T ss_dssp --CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred hcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence 0 223 4899999999976 666 99999999999999998765
No 77
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-31 Score=320.86 Aligned_cols=334 Identities=13% Similarity=0.171 Sum_probs=252.0
Q ss_pred cCCCCCCCC-----CCCCCCcc-c-ccCCcceEEEEecC-CCCcccccccc--eeecccccccCCCCCCCCCCCcCCccc
Q 001042 747 PSPLSKDAT-----NDDQQPAE-A-SGIGRSWVQSMFSR-EASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKI 816 (1178)
Q Consensus 747 fSP~g~~~~-----~~~~~~~~-~-~gh~~~i~~~aFSp-dg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~ 816 (1178)
|||+|.... ..+++.+. + .+|...|.+++|+| ||+++|+|+.| |++||+.+......
T Consensus 35 f~~~~~~~~~~~~w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~------------- 101 (437)
T 3gre_A 35 FGPIQEIVRSPNMGNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEV------------- 101 (437)
T ss_dssp GCCCCCCCCCCCGGGCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCC-------------
T ss_pred cCCccccccccccccccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcc-------------
Confidence 788887221 13344433 3 56779999999999 99999999998 99999987321000
Q ss_pred ccceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCC-CceeeEeecc------------cc
Q 001042 817 QSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLR-GSELRATLKG------------HT 883 (1178)
Q Consensus 817 ~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~-~~~~~~~l~~------------h~ 883 (1178)
......+ +|.+.|++++|+ +++++|++|+.||+|++||+... .........+ +.
T Consensus 102 ~~~~~~~-~h~~~v~~~~~~------------~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 168 (437)
T 3gre_A 102 YSSSLTY-DCSSTVTQITMI------------PNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKN 168 (437)
T ss_dssp CSCSEEE-ECSSCEEEEEEC------------TTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSC
T ss_pred cceeeec-cCCCCEEEEEEe------------CCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccc
Confidence 0012222 599999999998 89999999999999999997411 1222222222 33
Q ss_pred cceEEE----ecCCCEEEEEeCCCcEEEEECCCCcEEEEecC--CCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeE
Q 001042 884 RTVRAI----NSDRGKVVSGSDDQSVLVWDKQTSQLLEELKG--HDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTC 956 (1178)
Q Consensus 884 ~~V~~~----s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~--h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~ 956 (1178)
..+.++ ++++.++++|+.||.|++||+.+++.+..+.+ |...|++++|+ ++..+++|+.||+|++||++++++
T Consensus 169 ~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 248 (437)
T 3gre_A 169 EYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVL 248 (437)
T ss_dssp CCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEE
T ss_pred cCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccE
Confidence 444443 47899999999999999999999999999988 89999999999 788899999999999999999999
Q ss_pred EEEec-CCCCCEEEEEEeC----CCCEEEEEeCCCeEEEEECCCCceEEEEec--------------------------C
Q 001042 957 VATVG-RCSSAVLCMEYDD----STGILAAGGRDAVANIWDIRAGRQMHKFLG--------------------------H 1005 (1178)
Q Consensus 957 ~~~~~-~~~~~I~~l~~sp----~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~--------------------------~ 1005 (1178)
+..+. .+...|.+++|+| ++.++++|+.||.|++||+++++.+..+.+ |
T Consensus 249 ~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 328 (437)
T 3gre_A 249 IRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRS 328 (437)
T ss_dssp EEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCS
T ss_pred EEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceeccccc
Confidence 98886 6778999996664 677999999999999999999998887764 4
Q ss_pred CccEEEEEEcC-CEEEEEeCCCcEEEEEcCCCeeeeEeccCCC---cEEEEEEecCCCEEEEEeCCCcEEEEECCCCceE
Q 001042 1006 TKWIRSIRMDR-DTVITGSDDWTARMWSISRGTCDAVLACHAG---PVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIK 1081 (1178)
Q Consensus 1006 ~~~v~~l~~~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~---~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~ 1081 (1178)
...|.++++++ +++++|+.||.|++||+.+++....+.+|.. .+....++++..+++.. |+...+ .
T Consensus 329 ~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~--~ 398 (437)
T 3gre_A 329 LNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRK--------MKRTST--H 398 (437)
T ss_dssp GGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEE--------CC-------
T ss_pred CCceEEEEECCceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEe--------cccccc--c
Confidence 45577888864 4899999999999999999999999887643 45566666666555544 222222 2
Q ss_pred EEEEecccCCcEEEE--ecC--CCEEEEEeCCCcEEEEE
Q 001042 1082 CVKNVTIHSSAILSI--NAG--DHWLGIGAADNSMSLFH 1116 (1178)
Q Consensus 1082 ~~~~~~~h~~~i~~i--s~d--g~~Lasgs~Dg~I~iwd 1116 (1178)
.......|...|.++ +++ +.+|++|+.||.|+||+
T Consensus 399 ~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 399 SVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp --------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 334456799999887 455 77999999999999995
No 78
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-32 Score=321.49 Aligned_cols=327 Identities=12% Similarity=0.190 Sum_probs=235.7
Q ss_pred EEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEE--EecCCCEEEE
Q 001042 821 RIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVS 898 (1178)
Q Consensus 821 ~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~--~s~d~~~l~s 898 (1178)
..+..|.++|++++|+ |++++||+|+.||.|++||+..........+.+|...|.+ +++++++|++
T Consensus 5 ~~~~~~~~~v~~~~~s------------~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s 72 (377)
T 3dwl_C 5 QVLHILPKPSYEHAFN------------SQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVT 72 (377)
T ss_dssp EEEEECSSCCSCCEEC------------SSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEE
T ss_pred eeEecCCCcEEEEEEC------------CCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEE
Confidence 3455678899999998 8999999999999999999873322677888999999986 5899999999
Q ss_pred EeCCCcEEEEECCCCc---EEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCe---EEEEecC-CCCCEEEE
Q 001042 899 GSDDQSVLVWDKQTSQ---LLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDT---CVATVGR-CSSAVLCM 970 (1178)
Q Consensus 899 gs~dg~I~iwd~~t~~---~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~---~~~~~~~-~~~~I~~l 970 (1178)
++.||+|++||+.+++ ....+.+|...|.+++|+ ++..+++|+.||+|++||+++++ ....+.. |...|.++
T Consensus 73 ~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~ 152 (377)
T 3dwl_C 73 CSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSL 152 (377)
T ss_dssp EETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEE
T ss_pred EeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEE
Confidence 9999999999999887 677788999999999999 78899999999999999999887 3667777 89999999
Q ss_pred EEeCCCCEEEEEeCCCeEEEEECC------------------CCceEEEEecCCccEEEEEEcC--CEEEEEeCCCcEEE
Q 001042 971 EYDDSTGILAAGGRDAVANIWDIR------------------AGRQMHKFLGHTKWIRSIRMDR--DTVITGSDDWTARM 1030 (1178)
Q Consensus 971 ~~sp~~~~l~sgs~dg~I~lwD~~------------------~~~~~~~~~~~~~~v~~l~~~~--~~l~sgs~dg~I~i 1030 (1178)
+|+|+++++++|+.||.|++||++ .++.+..+ +|...|.+++|++ +++++++.||.|++
T Consensus 153 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~i 231 (377)
T 3dwl_C 153 DWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTI 231 (377)
T ss_dssp EECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-
T ss_pred EEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEE
Confidence 999999999999999999999985 34556666 8999999999954 58999999999999
Q ss_pred EEcCCCee----eeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEEec-C-----C
Q 001042 1031 WSISRGTC----DAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSINA-G-----D 1100 (1178)
Q Consensus 1031 wd~~~~~~----~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is~-d-----g 1100 (1178)
||+.+++. +..+.+|...|++++|+|++++|++|+.++.+ +|+...+.......+...........+ + +
T Consensus 232 wd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (377)
T 3dwl_C 232 AYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGRE 310 (377)
T ss_dssp CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCC
T ss_pred EECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccc
Confidence 99999987 78888999999999999999999998766655 777664422222222211110000000 0 0
Q ss_pred CEEEE--EeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCC-C---EEEEEeCCCcEEEEEC
Q 001042 1101 HWLGI--GAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLER-K---RICSGGRNGLLRLWEA 1174 (1178)
Q Consensus 1101 ~~Las--gs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg-~---~Las~s~Dg~V~IWdv 1174 (1178)
..-+. .......+..+.. |... ........|...|+++++.+++ . .|+|||.||.|++||+
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~----------g~~~---~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 311 EEGPVSFTALRSTFRNMDLK----------GSSQ---SISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp C--------------------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccccccchhhc----------cccc---cccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 00000 0000111111111 0000 1122345799999999976543 3 6999999999999986
No 79
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3.8e-31 Score=305.57 Aligned_cols=287 Identities=16% Similarity=0.268 Sum_probs=241.8
Q ss_pred ceEEecccccceEEEEeeeccceeccccccCCCC-EEEEEeC---CCcEEEEcCCCCCceeeEeecccccceEEE--ecC
Q 001042 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAG-FFISGST---DCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSD 892 (1178)
Q Consensus 819 ~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~-~Lasgs~---Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~--s~d 892 (1178)
..+.+.+|.+.|++++|+ |++. ++++|+. ||.|++||+.... .......+|...|.++ +++
T Consensus 10 ~~~~~~~h~~~v~~~~~~------------p~~~~l~~~~s~~~~d~~v~iw~~~~~~-~~~~~~~~~~~~v~~~~~~~~ 76 (357)
T 3i2n_A 10 IAHIQKGFNYTVFDCKWV------------PCSAKFVTMGNFARGTGVIQLYEIQHGD-LKLLREIEKAKPIKCGTFGAT 76 (357)
T ss_dssp EEEEEEECSSCEEEEEEC------------TTSSEEEEEEC--CCCEEEEEEEECSSS-EEEEEEEEESSCEEEEECTTC
T ss_pred hhhhccCCCCceEEEEEc------------CCCceEEEecCccCCCcEEEEEeCCCCc-ccceeeecccCcEEEEEEcCC
Confidence 445678999999999998 7775 4556665 9999999987332 2223344788888865 676
Q ss_pred ---CCEEEEEeCCCcEEEEECCCCc-EEEEecCCCCceEEEEE------e-CCCeEEEEeCCCeEEEEeCCCCe-EEEEe
Q 001042 893 ---RGKVVSGSDDQSVLVWDKQTSQ-LLEELKGHDAQVSCVRM------L-SGERVLTASHDGTVKMWDVRTDT-CVATV 960 (1178)
Q Consensus 893 ---~~~l~sgs~dg~I~iwd~~t~~-~~~~l~~h~~~V~~l~~------~-~~~~l~sgs~dg~V~iwd~~~~~-~~~~~ 960 (1178)
++++++|+.||.|++||+.+++ .+..+.+|...|.++.| + ++..+++|+.||.|++||+++++ .+..+
T Consensus 77 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 156 (357)
T 3i2n_A 77 SLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANM 156 (357)
T ss_dssp CTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEE
T ss_pred CCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceec
Confidence 6999999999999999999988 88899999999999976 3 57799999999999999999887 66777
Q ss_pred cCCCC----CEEEEE----EeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEcC-----CEEEEEeCCCc
Q 001042 961 GRCSS----AVLCME----YDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR-----DTVITGSDDWT 1027 (1178)
Q Consensus 961 ~~~~~----~I~~l~----~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~-----~~l~sgs~dg~ 1027 (1178)
..+.. .+.+++ |+++++++++|+.||.|++||+++++.... ..|...|.+++|++ +.+++++.||.
T Consensus 157 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 235 (357)
T 3i2n_A 157 EPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGK 235 (357)
T ss_dssp CCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTE
T ss_pred cccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCe
Confidence 55444 789998 788999999999999999999999887544 57889999999965 59999999999
Q ss_pred EEEEEcCCCeeeeEec-----cCCCcEEEEEEecCCC-EEEEEeCCCcEEEEECCCCc-----------------eEEEE
Q 001042 1028 ARMWSISRGTCDAVLA-----CHAGPVQCVEYSSSDR-GIITGSSDGLLRFWENDDGG-----------------IKCVK 1084 (1178)
Q Consensus 1028 I~iwd~~~~~~~~~~~-----~h~~~I~~l~~spdg~-~L~sgs~Dg~I~iwd~~~~~-----------------~~~~~ 1084 (1178)
|++||+++++....+. +|...|++++|+|+++ ++++|+.||.|++||+.++. ...+.
T Consensus 236 i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~ 315 (357)
T 3i2n_A 236 FHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQ 315 (357)
T ss_dssp EEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEE
T ss_pred EEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceee
Confidence 9999999887766655 8999999999999998 89999999999999998642 24677
Q ss_pred EecccCCcEEEE--ecCCCEEE-EEeCCCcEEEEEcCC
Q 001042 1085 NVTIHSSAILSI--NAGDHWLG-IGAADNSMSLFHRPQ 1119 (1178)
Q Consensus 1085 ~~~~h~~~i~~i--s~dg~~La-sgs~Dg~I~iwd~~~ 1119 (1178)
.+.+|...|.++ +|++++++ +|+.||.|++||+.+
T Consensus 316 ~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~ 353 (357)
T 3i2n_A 316 NVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK 353 (357)
T ss_dssp EEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred ccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence 888999999776 78999998 899999999999974
No 80
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-32 Score=324.82 Aligned_cols=308 Identities=8% Similarity=0.076 Sum_probs=250.3
Q ss_pred cceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceecccc
Q 001042 769 RSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVG 846 (1178)
Q Consensus 769 ~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~ 846 (1178)
..|.+++|||||+++|+++.| |+ |...+ +.+.||.+.|.+++|+
T Consensus 16 ~~v~sv~~SpDG~~iASas~D~TV~--d~~~~----------------------~~l~gh~~~v~~V~Fs---------- 61 (588)
T 2j04_A 16 DWKNNLTWARDGTLYLTTFPDISIG--QPKYA----------------------KDINCNSKNLFHVKEF---------- 61 (588)
T ss_dssp SSSCCEEECTTSCEEEECSSSEEEE--EECCC----------------------SCCSSBGGGTEEEEEE----------
T ss_pred ccEEEEEECCCCCEEEEEcCCceee--ccccc----------------------ceecCCCccEEEEEEC----------
Confidence 567788999999999999999 77 53322 2347999999999998
Q ss_pred ccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceE--EEecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCC
Q 001042 847 DREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDA 924 (1178)
Q Consensus 847 ~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~--~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~ 924 (1178)
|+| .++++.+|+.+ ......+ +|...|. +|+|+|..||+++.||.|++||.++ ++..+. |..
T Consensus 62 --Pdg-------~~~~~~~~~~~---~~~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~ 125 (588)
T 2j04_A 62 --PLE-------FENKLDFELAQ---QNGLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKG 125 (588)
T ss_dssp --CCC-------CCCTTTTSCCC---SSCSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSS
T ss_pred --CCC-------CcceEEEEeCC---CceEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCC
Confidence 777 56766666633 2222222 4567777 4699999999999999999999654 666677 665
Q ss_pred -----ceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCe-------EEEEe----cCCCCCEEEEEEeCCCCEEEEEeCCCe
Q 001042 925 -----QVSCVRML-SGERVLTASHDGTVKMWDVRTDT-------CVATV----GRCSSAVLCMEYDDSTGILAAGGRDAV 987 (1178)
Q Consensus 925 -----~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~-------~~~~~----~~~~~~I~~l~~sp~~~~l~sgs~dg~ 987 (1178)
.|.+++|+ +|+.+++|+.||+|++||+.++. .+.++ .+|...|.+++|+|+| +++++.|+.
T Consensus 126 ~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~t 203 (588)
T 2j04_A 126 NLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNS 203 (588)
T ss_dssp CSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCC
T ss_pred ccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCe
Confidence 59999999 89999999999999999999885 35665 5677899999999999 888999999
Q ss_pred EEEEECCCCce---EEEE-ecCCccEEEEEEcCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEE--ecCCCEE
Q 001042 988 ANIWDIRAGRQ---MHKF-LGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEY--SSSDRGI 1061 (1178)
Q Consensus 988 I~lwD~~~~~~---~~~~-~~~~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~--spdg~~L 1061 (1178)
+++||+.+++. ..++ .+|...|.+++|+++.+++++ +|+|++||+.+++......+|.+.|..++| +|++..+
T Consensus 204 VrlWd~~~~~~~~~~~tL~~~h~~~V~svaFsg~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~L 282 (588)
T 2j04_A 204 VFSMTVSASSHQPVSRMIQNASRRKITDLKIVDYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTIL 282 (588)
T ss_dssp EEEECCCSSSSCCCEEEEECCCSSCCCCEEEETTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEE
T ss_pred EEEEECCCCccccceeeecccccCcEEEEEEECCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEE
Confidence 99999988773 3566 378899999999878888887 699999999988774444479999999999 9999999
Q ss_pred EEEeCCCcEEEEECCCCceEEEEEecccCCcEEEEecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeecc
Q 001042 1062 ITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTP 1141 (1178)
Q Consensus 1062 ~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~ 1141 (1178)
++++.||+ ++|..+. .+++||+..+++. |+++++|+...+. ...+
T Consensus 283 a~a~edG~-klw~~d~----------------~~~spd~~l~a~~--d~~v~lW~~~g~~----------------l~~~ 327 (588)
T 2j04_A 283 LMSNKTSY-KVLLEDE----------------LHVTADNIIAPYL--EKKFKKWSTIWNE----------------FNNY 327 (588)
T ss_dssp EECSSCEE-EEEESSS----------------EEEECCCSSHHHH--HHHHHHTTTTTTS----------------SSSS
T ss_pred EEEcCCCC-EEEeecc----------------EEECCCceEEEEc--CCEEEEEECCCCc----------------eeee
Confidence 99999999 9999871 3488999888775 9999999975321 1123
Q ss_pred CCCcccEEEEEEcCCCCEEEEEeC
Q 001042 1142 QKTVAVVRCIASDLERKRICSGGR 1165 (1178)
Q Consensus 1142 ~~h~~~V~~lafspdg~~Las~s~ 1165 (1178)
.+ ...|.+++|||||+.+|+++.
T Consensus 328 ~~-~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 328 ET-TLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp CC-EEEEEEEEECTTSSEEEEEEE
T ss_pred cc-ceEEEEEEECCCCCEEEEEEe
Confidence 33 667999999999999999874
No 81
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-32 Score=331.95 Aligned_cols=316 Identities=13% Similarity=0.064 Sum_probs=227.2
Q ss_pred ecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceeccccccCCCCE
Q 001042 776 FSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGF 853 (1178)
Q Consensus 776 FSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~ 853 (1178)
.+|+++.+|+++.| |+||++++++.. .....++.+|.+.|++++|+|.. ..++++.+
T Consensus 169 ~~~~~~~laS~s~D~tI~iWd~~~~~~~---------------~~~~~~l~~~~~~V~~v~wsp~~------~~~~~~~~ 227 (524)
T 2j04_B 169 LNEHLEMFDKEKHSSCIQIFKMNTSTLH---------------CVKVQTIVHSFGEVWDLKWHEGC------HAPHLVGC 227 (524)
T ss_dssp -------------CEEEEEEEEETTTCC---------------EEEEEEEEECCCSEEEEEECSSC------CCSSSSCE
T ss_pred cchhhhhhccCCCCceEEEEEccCCCCC---------------ceEEEEEEecCCcEEEEEECCCC------CCCCCCce
Confidence 57888899999988 999999876520 00235577899999999999521 12245789
Q ss_pred EEEEeCCCcEEEEcCCCCCc---------eeeEeecccccceEEE--ecCCCEEEEEeCCCcEEEEECCCCc-EEEEecC
Q 001042 854 FISGSTDCLVKIWDPSLRGS---------ELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQ-LLEELKG 921 (1178)
Q Consensus 854 Lasgs~Dg~I~iWd~~~~~~---------~~~~~l~~h~~~V~~~--s~d~~~l~sgs~dg~I~iwd~~t~~-~~~~l~~ 921 (1178)
||+|+.||+|++||+..... .....+.+|...|.++ +++ ..|++|+.||+|++||+++++ ....+.+
T Consensus 228 LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~ 306 (524)
T 2j04_B 228 LSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQV 306 (524)
T ss_dssp EEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEEC
T ss_pred EEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeec
Confidence 99999999999999873321 1234678899999976 444 589999999999999999764 4567889
Q ss_pred CCCceEEE--EEeC-C-CeEEEEeCCCeEEEEeCCCCeEEEEecCCC--CCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Q 001042 922 HDAQVSCV--RMLS-G-ERVLTASHDGTVKMWDVRTDTCVATVGRCS--SAVLCMEYDDSTGILAAGGRDAVANIWDIRA 995 (1178)
Q Consensus 922 h~~~V~~l--~~~~-~-~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~--~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~ 995 (1178)
|...|.++ +|++ + ..+++|+.||+|++||++++++...+.+|. ..|.+++|+|+++.+++++.|++|++||+++
T Consensus 307 H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~ 386 (524)
T 2j04_B 307 HDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRA 386 (524)
T ss_dssp SSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTC
T ss_pred ccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcc
Confidence 99999999 4564 4 689999999999999999887665555544 3578999999999999999999999999999
Q ss_pred CceEEEEecCCccEEEEEEcC--CEEEEEeCCCcEEEEEcCCCeeeeEecc-----CCCcEEEEEEecCCCEEEEEeCCC
Q 001042 996 GRQMHKFLGHTKWIRSIRMDR--DTVITGSDDWTARMWSISRGTCDAVLAC-----HAGPVQCVEYSSSDRGIITGSSDG 1068 (1178)
Q Consensus 996 ~~~~~~~~~~~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~-----h~~~I~~l~~spdg~~L~sgs~Dg 1068 (1178)
+.++..+.+|.+.|++++|++ ..+++|+.||+|++||+..+ ....... +...+.+++|+|+++.+. ...+
T Consensus 387 ~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~~- 463 (524)
T 2j04_B 387 AFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDSS- 463 (524)
T ss_dssp TTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEE-ECCC-
T ss_pred cccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEE-ccCC-
Confidence 999888999999999999965 58999999999999998654 3222211 122578999999998553 2222
Q ss_pred cEEEEECC-CCceEEEEEecccCCcEEEE--ecCC---CEEEEEeCCCcEEEEEcCC
Q 001042 1069 LLRFWEND-DGGIKCVKNVTIHSSAILSI--NAGD---HWLGIGAADNSMSLFHRPQ 1119 (1178)
Q Consensus 1069 ~I~iwd~~-~~~~~~~~~~~~h~~~i~~i--s~dg---~~Lasgs~Dg~I~iwd~~~ 1119 (1178)
+.+|+.. ++ .+...+.+|...|.++ +|++ .++|+|+.||.|+||++..
T Consensus 464 -~~~~~~~~~g--~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 464 -YEVYPLTVND--VSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp -CCCCC---------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred -ceecccccCC--cceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 3344332 33 4667788898888655 7875 4999999999999999863
No 82
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-30 Score=307.64 Aligned_cols=266 Identities=19% Similarity=0.336 Sum_probs=235.0
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCceeeEeecc-cccceEE--EecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceE
Q 001042 851 AGFFISGSTDCLVKIWDPSLRGSELRATLKG-HTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVS 927 (1178)
Q Consensus 851 ~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~-h~~~V~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~ 927 (1178)
+..+++++.||.|++||+. .......+.. |...|.+ +++++++|++|+.||.|++||+.+++.+..+.+|...|.
T Consensus 103 ~~~l~~~~~d~~v~lw~~~--~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 180 (401)
T 4aez_A 103 NLNVVAVALERNVYVWNAD--SGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVG 180 (401)
T ss_dssp TTSEEEEEETTEEEEEETT--TCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred CCCEEEEECCCeEEEeeCC--CCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceE
Confidence 4557888899999999987 3333344443 7888885 589999999999999999999999999999999999999
Q ss_pred EEEEeCCCeEEEEeCCCeEEEEeCC-CCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCC
Q 001042 928 CVRMLSGERVLTASHDGTVKMWDVR-TDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHT 1006 (1178)
Q Consensus 928 ~l~~~~~~~l~sgs~dg~V~iwd~~-~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~ 1006 (1178)
+++| +++.+++|+.||.|++||++ .+..+..+..|...|.+++|+|+++++++|+.||.|++||+++++.+..+..|.
T Consensus 181 ~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 259 (401)
T 4aez_A 181 CLSW-NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHN 259 (401)
T ss_dssp EEEE-ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCS
T ss_pred EEEE-CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCc
Confidence 9999 56799999999999999998 567788888999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEEcC---CEEEEEe--CCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEE--eCCCcEEEEECCCCc
Q 001042 1007 KWIRSIRMDR---DTVITGS--DDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITG--SSDGLLRFWENDDGG 1079 (1178)
Q Consensus 1007 ~~v~~l~~~~---~~l~sgs--~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sg--s~Dg~I~iwd~~~~~ 1079 (1178)
..|.+++|++ ..+++|+ .||.|++||+.+++.+..+. +...|++++|+|++++++++ +.||.|++||+.++.
T Consensus 260 ~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~ 338 (401)
T 4aez_A 260 AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG 338 (401)
T ss_dssp SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTE
T ss_pred ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcc
Confidence 9999999965 3677765 79999999999999988886 67789999999999999995 489999999999986
Q ss_pred eEEEEEecccCCcEEEE--ecCCCEEEEEeCCCcEEEEEcCCC
Q 001042 1080 IKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQE 1120 (1178)
Q Consensus 1080 ~~~~~~~~~h~~~i~~i--s~dg~~Lasgs~Dg~I~iwd~~~~ 1120 (1178)
......+.+|...|.++ +|+|.+|++|+.||.|++|++.++
T Consensus 339 ~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 339 LTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDG 381 (401)
T ss_dssp EEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-
T ss_pred ceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 66677788898888655 899999999999999999999854
No 83
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=3e-31 Score=309.43 Aligned_cols=292 Identities=11% Similarity=0.129 Sum_probs=225.1
Q ss_pred ccceEEEEeeeccceeccccccCCCCEEEEEeCCC-------cEEEEcCCCCCce--------eeEeecccccceEEEec
Q 001042 827 AGAITALHCVTKREVWDLVGDREDAGFFISGSTDC-------LVKIWDPSLRGSE--------LRATLKGHTRTVRAINS 891 (1178)
Q Consensus 827 ~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg-------~I~iWd~~~~~~~--------~~~~l~~h~~~V~~~s~ 891 (1178)
.-||++++|+ ||+++||+||.|. .|++|+++..... ....+.+|...+.++++
T Consensus 14 g~PV~sv~fs------------~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~ 81 (365)
T 4h5i_A 14 GYPAYGAKFL------------NNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDA 81 (365)
T ss_dssp SSCEEEEEEE------------ETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEE
T ss_pred CCCEEEEEEe------------CCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEe
Confidence 3589999998 8999999998643 5999998643321 11346788888999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeE----EEE-----ecC
Q 001042 892 DRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTC----VAT-----VGR 962 (1178)
Q Consensus 892 d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~----~~~-----~~~ 962 (1178)
+++.+++|+.++..++|+ ++.|+++++|++.++.. ... ...
T Consensus 82 ~~~~~~~g~~~~~~~l~s------------------------------~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 131 (365)
T 4h5i_A 82 SKGIILVGCNENSTKITQ------------------------------GKGNKHLRKFKYDKVNDQLEFLTSVDFDASTN 131 (365)
T ss_dssp ETTEEEEECCCCHHHHHH------------------------------TSCCCCEEEEEEETTTTEEEEEEEECSSCCCC
T ss_pred CCCEEEEEECCCccEEEE------------------------------ecCCCcEEEEEecCCCceEEEeeeeceeecCC
Confidence 999988887665544443 23344455555433211 111 122
Q ss_pred CCCCEEEEEEeCCCCEEEEEe--CCCeEEEEECCCCceEEEEecCCccEEEEEEcC--CEEEEEeCCCcEEEEEcCCCee
Q 001042 963 CSSAVLCMEYDDSTGILAAGG--RDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR--DTVITGSDDWTARMWSISRGTC 1038 (1178)
Q Consensus 963 ~~~~I~~l~~sp~~~~l~sgs--~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~ 1038 (1178)
+...+.+++|+|||+++++++ .|+.|++||+++++.+..+. |...|.+++|++ .++++++.+ .+++|+..+++.
T Consensus 132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~ 209 (365)
T 4h5i_A 132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSC 209 (365)
T ss_dssp TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCE
T ss_pred cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcc
Confidence 345689999999999987655 68999999999999988885 778899999955 488888754 567777777765
Q ss_pred eeE--eccCCCcEEEEEEecCCCEEEEEeCCC----cEEEEECCCCceE--EEEEecccCCcEEEE--ecCCCEEEEEeC
Q 001042 1039 DAV--LACHAGPVQCVEYSSSDRGIITGSSDG----LLRFWENDDGGIK--CVKNVTIHSSAILSI--NAGDHWLGIGAA 1108 (1178)
Q Consensus 1039 ~~~--~~~h~~~I~~l~~spdg~~L~sgs~Dg----~I~iwd~~~~~~~--~~~~~~~h~~~i~~i--s~dg~~Lasgs~ 1108 (1178)
... ...|...|.+++|+|+++++++++.|+ .++.|++..+... ....+.+|...|.++ +|+|++||+|+.
T Consensus 210 ~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~ 289 (365)
T 4h5i_A 210 IARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASN 289 (365)
T ss_dssp EEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEET
T ss_pred eeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcC
Confidence 543 446888999999999999999999887 6888998876433 345677898888765 899999999999
Q ss_pred CCcEEEEEcCCCccccccCCCCCccceeEeec-cCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001042 1109 DNSMSLFHRPQERLGGFSGTGSKMSGWQLYRT-PQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATIN 1177 (1178)
Q Consensus 1109 Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~-~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~tg 1177 (1178)
|++|+|||+.++ +++.. +.+|...|++|+|||||++|||||.|++|+|||+.++
T Consensus 290 D~~V~iwd~~~~---------------~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 290 DNSIALVKLKDL---------------SMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp TSCEEEEETTTT---------------EEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CCEEEEEECCCC---------------cEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 999999999843 55554 5799999999999999999999999999999999754
No 84
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=9.8e-32 Score=321.43 Aligned_cols=301 Identities=13% Similarity=0.137 Sum_probs=234.8
Q ss_pred ceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEE--ec-CCCE
Q 001042 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NS-DRGK 895 (1178)
Q Consensus 819 ~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~--s~-d~~~ 895 (1178)
......+|...|+||+|+| .++++||+|+.||+|+|||+..........+.+|...|.++ +| ++++
T Consensus 111 ~~~~~~~~~~~V~~l~~~P-----------~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~ 179 (435)
T 4e54_B 111 ILQKAAPFDRRATSLAWHP-----------THPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQ 179 (435)
T ss_dssp SCCEEEECSSCEEEEEECS-----------SCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTE
T ss_pred ecccCCCCCCCEEEEEEeC-----------CCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCE
Confidence 4456778999999999984 36789999999999999998755555566778999999865 65 6889
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEecC--CCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEE
Q 001042 896 VVSGSDDQSVLVWDKQTSQLLEELKG--HDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEY 972 (1178)
Q Consensus 896 l~sgs~dg~I~iwd~~t~~~~~~l~~--h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~ 972 (1178)
|++|+.||+|++||++++........ +...+.+++|+ ++..+++|+.||.|++||++ ++.+..+..|...|.+++|
T Consensus 180 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~ 258 (435)
T 4e54_B 180 FYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVAL 258 (435)
T ss_dssp EEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEE
T ss_pred EEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeee
Confidence 99999999999999987655433333 34567889998 78899999999999999986 4556677889999999999
Q ss_pred eCCCC-EEEEEeCCCeEEEEECCCCceEEE---EecCCccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCeeeeEeccCC
Q 001042 973 DDSTG-ILAAGGRDAVANIWDIRAGRQMHK---FLGHTKWIRSIRMD--RDTVITGSDDWTARMWSISRGTCDAVLACHA 1046 (1178)
Q Consensus 973 sp~~~-~l~sgs~dg~I~lwD~~~~~~~~~---~~~~~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~ 1046 (1178)
+|++. ++++|+.||.|++||+++++.... ..+|...|++++|+ +.+|++++.||.|++||+.++.+...+..|.
T Consensus 259 ~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~ 338 (435)
T 4e54_B 259 NPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHP 338 (435)
T ss_dssp CTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCC
T ss_pred cCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccc
Confidence 99876 678899999999999998765433 35789999999995 4599999999999999999998888777665
Q ss_pred Cc------EEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEEecCCCEE-EEEeCCCcEEEEEcCC
Q 001042 1047 GP------VQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSINAGDHWL-GIGAADNSMSLFHRPQ 1119 (1178)
Q Consensus 1047 ~~------I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~L-asgs~Dg~I~iwd~~~ 1119 (1178)
.. +....|+|++..+++++. +++..+ +++..++.|++||..+
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~d~~~~~~~~~~~~~i~iwd~~~ 387 (435)
T 4e54_B 339 HRHFQHLTPIKAAWHPRYNLIVVGRY-------------------------------PDPNFKSCTPYELRTIDVFDGNS 387 (435)
T ss_dssp CCCCSSSCCCBCEECSSSSCEEEECC-------------------------------CCTTSCCSSTTCCCCEEEECSSS
T ss_pred ccccccceeEEEEEcCCCCEEEEEEc-------------------------------CCCCeEEEEecCCCEEEEEECCC
Confidence 32 334567777776666542 122222 2234557899999874
Q ss_pred CccccccCCCCCccceeEeec-cCCCcccEEEE-EEcCCCCEEEEEeCCCcEEEEECCCCC
Q 001042 1120 ERLGGFSGTGSKMSGWQLYRT-PQKTVAVVRCI-ASDLERKRICSGGRNGLLRLWEATINI 1178 (1178)
Q Consensus 1120 ~~~~~~~~~g~~~~~~~~~~~-~~~h~~~V~~l-afspdg~~Las~s~Dg~V~IWdv~tg~ 1178 (1178)
+ +++.. ..+|...|.++ +|+|||++||+|+ |++|+||++++|+
T Consensus 388 g---------------~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk 432 (435)
T 4e54_B 388 G---------------KMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEAR 432 (435)
T ss_dssp C---------------CEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC---
T ss_pred C---------------cEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCe
Confidence 3 23332 45778888887 6999999999876 8899999999874
No 85
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.98 E-value=2.3e-30 Score=292.79 Aligned_cols=246 Identities=20% Similarity=0.308 Sum_probs=213.2
Q ss_pred eEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEE--ec--CCCE
Q 001042 820 IRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NS--DRGK 895 (1178)
Q Consensus 820 ~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~--s~--d~~~ 895 (1178)
+.++.+|.+.|++++|+ ++|++||+|+.||+|+|||+..........+.+|...|.++ ++ ++++
T Consensus 2 ~~~~~~h~~~V~~~~~s------------~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~ 69 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMD------------YYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTI 69 (297)
T ss_dssp CEECCSCSSCEEEEEEC------------TTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSE
T ss_pred ceeccCCcCceEEEEEC------------CCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCE
Confidence 35688999999999998 89999999999999999998744456778999999999976 44 3899
Q ss_pred EEEEeCCCcEEEEECCCCc--EEEEecCCCCceEEEEEeC---CCeEEEEeCCCeEEEEeCCCCe--EEEEecCCCCCEE
Q 001042 896 VVSGSDDQSVLVWDKQTSQ--LLEELKGHDAQVSCVRMLS---GERVLTASHDGTVKMWDVRTDT--CVATVGRCSSAVL 968 (1178)
Q Consensus 896 l~sgs~dg~I~iwd~~t~~--~~~~l~~h~~~V~~l~~~~---~~~l~sgs~dg~V~iwd~~~~~--~~~~~~~~~~~I~ 968 (1178)
|++|+.||+|++||+.+++ .+..+.+|...|.+++|++ +..+++|+.||+|++||++++. ....+..|...|.
T Consensus 70 l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~ 149 (297)
T 2pm7_B 70 LASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVN 149 (297)
T ss_dssp EEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEE
T ss_pred EEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccc
Confidence 9999999999999999874 5667888999999999984 6799999999999999998763 2355678899999
Q ss_pred EEEEeCC-------------CCEEEEEeCCCeEEEEECCCCc----eEEEEecCCccEEEEEEcC-----CEEEEEeCCC
Q 001042 969 CMEYDDS-------------TGILAAGGRDAVANIWDIRAGR----QMHKFLGHTKWIRSIRMDR-----DTVITGSDDW 1026 (1178)
Q Consensus 969 ~l~~sp~-------------~~~l~sgs~dg~I~lwD~~~~~----~~~~~~~~~~~v~~l~~~~-----~~l~sgs~dg 1026 (1178)
+++|+|+ ++.|++|+.||.|++||+++++ ....+.+|...|.+++|++ .++++++.|+
T Consensus 150 ~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~ 229 (297)
T 2pm7_B 150 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDR 229 (297)
T ss_dssp EEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS
T ss_pred eEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCC
Confidence 9999997 5799999999999999998876 5667889999999999976 4799999999
Q ss_pred cEEEEEcCCCe---eeeEe--ccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 001042 1027 TARMWSISRGT---CDAVL--ACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDD 1077 (1178)
Q Consensus 1027 ~I~iwd~~~~~---~~~~~--~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~ 1077 (1178)
+|++||++++. ....+ ..|...|.+++|+|+|++|++++.||.|++|+...
T Consensus 230 ~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 230 TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp CEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred cEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 99999998743 12233 46788999999999999999999999999999863
No 86
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.98 E-value=2.4e-30 Score=307.82 Aligned_cols=272 Identities=18% Similarity=0.319 Sum_probs=235.9
Q ss_pred EEEEecCCCCcccccccc-eeecccccccCCCCCCCCCCCcCCcccccceEE--ecccccceEEEEeeeccceecccccc
Q 001042 772 VQSMFSREASSRSHSFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRI--IRGHAGAITALHCVTKREVWDLVGDR 848 (1178)
Q Consensus 772 ~~~aFSpdg~~las~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~gH~~~V~~l~fs~~~~~~~~~~~s 848 (1178)
..++||+++ .||+|.+. |+|||+.+++ .++. +.+|.+.|++|+|+
T Consensus 109 ~~l~wS~~n-~lAvgld~tV~lWd~~tg~-------------------~~~~~~~~~~~~~V~sv~fs------------ 156 (420)
T 4gga_A 109 NLVDWSSGN-VLAVALDNSVYLWSASSGD-------------------ILQLLQMEQPGEYISSVAWI------------ 156 (420)
T ss_dssp BCEEECTTS-EEEEEETTEEEEEETTTCC-------------------EEEEEECCSTTCCEEEEEEC------------
T ss_pred eeEEECCCC-EEEEEeCCEEEEEECCCCC-------------------EEEEEEecCCCCcEEEEEEC------------
Confidence 457999864 88888766 9999999887 4554 45788899999998
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEEeCCCcEEEEECCCC-cEEEEecCCCCceE
Q 001042 849 EDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTS-QLLEELKGHDAQVS 927 (1178)
Q Consensus 849 ~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sgs~dg~I~iwd~~t~-~~~~~l~~h~~~V~ 927 (1178)
|||++||+|+.||+|++||+. ..+....+.+|...+.+++.++..+++|+.|+.+++||.... ..+..+.+|...+.
T Consensus 157 pdg~~lasgs~Dg~v~iWd~~--~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~ 234 (420)
T 4gga_A 157 KEGNYLAVGTSSAEVQLWDVQ--QQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVC 234 (420)
T ss_dssp TTSSEEEEEETTSCEEEEETT--TTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEE
T ss_pred CCCCEEEEEECCCeEEEEEcC--CCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEeccccccee
Confidence 899999999999999999976 566778899999999999999999999999999999998864 55678899999999
Q ss_pred EEEEe-CCCeEEEEeCCCeEEEEeCCCCe----EEEEecCCCCCEEEEEEeCCCC-EEEEE--eCCCeEEEEECCCCceE
Q 001042 928 CVRML-SGERVLTASHDGTVKMWDVRTDT----CVATVGRCSSAVLCMEYDDSTG-ILAAG--GRDAVANIWDIRAGRQM 999 (1178)
Q Consensus 928 ~l~~~-~~~~l~sgs~dg~V~iwd~~~~~----~~~~~~~~~~~I~~l~~sp~~~-~l~sg--s~dg~I~lwD~~~~~~~ 999 (1178)
.+.++ ++..+++++.||.+++||..+++ .+.....+...|.+++|+|++. .++++ +.|+.|++||++++++.
T Consensus 235 ~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~ 314 (420)
T 4gga_A 235 GLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 314 (420)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEE
T ss_pred eeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccc
Confidence 99999 78899999999999999998765 3456678889999999999654 55543 47999999999999999
Q ss_pred EEEecCCccEEEEEEc--CCEEEEEe--CCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 001042 1000 HKFLGHTKWIRSIRMD--RDTVITGS--DDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWEN 1075 (1178)
Q Consensus 1000 ~~~~~~~~~v~~l~~~--~~~l~sgs--~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~ 1075 (1178)
..+..+ ..+.++.+. ++.+++++ .||.|++||+.+++++.++.+|.+.|++++|+|+|++|+||+.||+|++||+
T Consensus 315 ~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv 393 (420)
T 4gga_A 315 SAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC 393 (420)
T ss_dssp EEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred eeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 888655 457777774 45666654 7999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 001042 1076 DDG 1078 (1178)
Q Consensus 1076 ~~~ 1078 (1178)
.+.
T Consensus 394 ~~~ 396 (420)
T 4gga_A 394 FEL 396 (420)
T ss_dssp SCS
T ss_pred CCC
Confidence 765
No 87
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.98 E-value=1.6e-30 Score=307.31 Aligned_cols=287 Identities=21% Similarity=0.345 Sum_probs=243.8
Q ss_pred CCCcccccCCcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecc-cccceEEEEe
Q 001042 759 QQPAEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRG-HAGAITALHC 835 (1178)
Q Consensus 759 ~~~~~~~gh~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g-H~~~V~~l~f 835 (1178)
.+.+...+|...+...++++++..+++++.+ |++||+.++. ....+.. |.+.|++++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~-------------------~~~~~~~~~~~~v~~v~~ 142 (401)
T 4aez_A 82 ERVLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGS-------------------VSALAETDESTYVASVKW 142 (401)
T ss_dssp SEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCC-------------------EEEEEECCTTCCEEEEEE
T ss_pred ceeeeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCc-------------------EeEeeecCCCCCEEEEEE
Confidence 3445556777665554444445556666666 9999999877 4555554 8999999999
Q ss_pred eeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEEeCCCcEEEEECC-CCc
Q 001042 836 VTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQ-TSQ 914 (1178)
Q Consensus 836 s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sgs~dg~I~iwd~~-t~~ 914 (1178)
+ |++++|++|+.||.|++||+. .......+.+|...|.+++.+++.+++|+.||.|++||+. .+.
T Consensus 143 s------------~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 208 (401)
T 4aez_A 143 S------------HDGSFLSVGLGNGLVDIYDVE--SQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANH 208 (401)
T ss_dssp C------------TTSSEEEEEETTSCEEEEETT--TCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC
T ss_pred C------------CCCCEEEEECCCCeEEEEECc--CCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcc
Confidence 8 899999999999999999976 4566788889999999998899999999999999999998 567
Q ss_pred EEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCC-EEEEEe--CCCeEEE
Q 001042 915 LLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTG-ILAAGG--RDAVANI 990 (1178)
Q Consensus 915 ~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~-~l~sgs--~dg~I~l 990 (1178)
.+..+.+|...|.+++|+ ++..+++|+.||.|++||+++++.+..+..|...|.+++|+|++. .+++|+ .||.|++
T Consensus 209 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i 288 (401)
T 4aez_A 209 QIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHF 288 (401)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEE
T ss_pred eeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEE
Confidence 788899999999999999 788999999999999999999999999999999999999999765 555554 6999999
Q ss_pred EECCCCceEEEEecCCccEEEEEEc--CCEEEE--EeCCCcEEEEEcCCCeeee--EeccCCCcEEEEEEecCCCEEEEE
Q 001042 991 WDIRAGRQMHKFLGHTKWIRSIRMD--RDTVIT--GSDDWTARMWSISRGTCDA--VLACHAGPVQCVEYSSSDRGIITG 1064 (1178)
Q Consensus 991 wD~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s--gs~dg~I~iwd~~~~~~~~--~~~~h~~~I~~l~~spdg~~L~sg 1064 (1178)
||+++++.+..+. +...+.+++|+ +..+++ |+.||.|++||+.+++... .+.+|.+.|++++|+|+|++|+++
T Consensus 289 ~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~ 367 (401)
T 4aez_A 289 WNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTA 367 (401)
T ss_dssp EETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEE
T ss_pred EECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEE
Confidence 9999999988885 66789999995 457777 4489999999999875544 466899999999999999999999
Q ss_pred eCCCcEEEEECCCCc
Q 001042 1065 SSDGLLRFWENDDGG 1079 (1178)
Q Consensus 1065 s~Dg~I~iwd~~~~~ 1079 (1178)
+.||.|++||+.+++
T Consensus 368 ~~dg~i~iw~~~~~~ 382 (401)
T 4aez_A 368 ASDENLKFWRVYDGD 382 (401)
T ss_dssp CTTSEEEEEECCC--
T ss_pred eCCCcEEEEECCCCc
Confidence 999999999999883
No 88
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.98 E-value=3.7e-30 Score=292.32 Aligned_cols=272 Identities=17% Similarity=0.301 Sum_probs=233.9
Q ss_pred EEEEecCCCCcccccccc-eeecccccccCCCCCCCCCCCcCCcccccceEEe--cccccceEEEEeeeccceecccccc
Q 001042 772 VQSMFSREASSRSHSFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRII--RGHAGAITALHCVTKREVWDLVGDR 848 (1178)
Q Consensus 772 ~~~aFSpdg~~las~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~gH~~~V~~l~fs~~~~~~~~~~~s 848 (1178)
.+++||+++ +||+|.+. |+|||+++++ +++.+ .+|...|++++|+
T Consensus 29 ~~l~WS~~~-~lAvg~D~tV~iWd~~tg~-------------------~~~~~~~~~~~~~V~~v~~~------------ 76 (318)
T 4ggc_A 29 NLVDWSSGN-VLAVALDNSVYLWSASSGD-------------------ILQLLQMEQPGEYISSVAWI------------ 76 (318)
T ss_dssp BCEEECTTS-EEEEEETTEEEEEETTTCC-------------------EEEEEECCSTTCCEEEEEEC------------
T ss_pred eEEEECCCC-EEEEEeCCEEEEEECCCCC-------------------EEEEEEecCCCCeEEEEEEC------------
Confidence 457999997 78887766 9999999887 55555 5788899999998
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEEeCCCcEEEEECCCC-cEEEEecCCCCceE
Q 001042 849 EDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTS-QLLEELKGHDAQVS 927 (1178)
Q Consensus 849 ~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sgs~dg~I~iwd~~t~-~~~~~l~~h~~~V~ 927 (1178)
+++++||+|+.||+|++||+. ..+....+.+|...+.+++.++..+++++.++.+++|+..++ ..+..+.+|...+.
T Consensus 77 ~~~~~l~sgs~Dg~v~iw~~~--~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (318)
T 4ggc_A 77 KEGNYLAVGTSSAEVQLWDVQ--QQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVC 154 (318)
T ss_dssp TTSSEEEEEETTSEEEEEETT--TTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEE
T ss_pred CCCCEEEEEECCCcEEEeecC--CceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceE
Confidence 899999999999999999976 567778899999999999999999999999999999998875 55677889999999
Q ss_pred EEEEe-CCCeEEEEeCCCeEEEEeCCCCeE----EEEecCCCCCEEEEEEeCCCCEE---EEEeCCCeEEEEECCCCceE
Q 001042 928 CVRML-SGERVLTASHDGTVKMWDVRTDTC----VATVGRCSSAVLCMEYDDSTGIL---AAGGRDAVANIWDIRAGRQM 999 (1178)
Q Consensus 928 ~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~----~~~~~~~~~~I~~l~~sp~~~~l---~sgs~dg~I~lwD~~~~~~~ 999 (1178)
.+.+. ++..+++++.||+|++||+++++. ......+...|.++++++++..+ ++++.++.|++||.+.....
T Consensus 155 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~ 234 (318)
T 4ggc_A 155 GLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 234 (318)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE
T ss_pred EEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc
Confidence 99998 788999999999999999987653 34455678899999999976643 35667899999999988776
Q ss_pred EEEecCCccEEEEEEc--CCEEEEE--eCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 001042 1000 HKFLGHTKWIRSIRMD--RDTVITG--SDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWEN 1075 (1178)
Q Consensus 1000 ~~~~~~~~~v~~l~~~--~~~l~sg--s~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~ 1075 (1178)
... .+...+..+.+. ++.++++ +.||.|++||+++++++.++.+|.+.|++++|+|+|++|++|+.||+|++||+
T Consensus 235 ~~~-~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~ 313 (318)
T 4ggc_A 235 SAV-DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC 313 (318)
T ss_dssp EEE-ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred ccc-cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 665 566678888874 4455554 47999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 001042 1076 DDG 1078 (1178)
Q Consensus 1076 ~~~ 1078 (1178)
.+.
T Consensus 314 ~~~ 316 (318)
T 4ggc_A 314 FEL 316 (318)
T ss_dssp SCC
T ss_pred CCC
Confidence 764
No 89
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.98 E-value=8.7e-32 Score=314.50 Aligned_cols=279 Identities=13% Similarity=0.144 Sum_probs=224.3
Q ss_pred cCCcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceec
Q 001042 766 GIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWD 843 (1178)
Q Consensus 766 gh~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~ 843 (1178)
.|..+|.+++|||||+++|+++.| |++||+.++.. ..+..+.+|.+.|++++|+
T Consensus 9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~-----------------~~~~~~~~h~~~v~~~~~s------- 64 (377)
T 3dwl_C 9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW-----------------KHARTFSDHDKIVTCVDWA------- 64 (377)
T ss_dssp ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE-----------------EECCCBCCCSSCEEEEEEC-------
T ss_pred cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce-----------------EEEEEEecCCceEEEEEEe-------
Confidence 356789999999999999999888 99999997620 1567789999999999998
Q ss_pred cccccCCCCEEEEEeCCCcEEEEcCCCCC-ceeeEeecccccceEEE--ecCCCEEEEEeCCCcEEEEECCCCc---EEE
Q 001042 844 LVGDREDAGFFISGSTDCLVKIWDPSLRG-SELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQ---LLE 917 (1178)
Q Consensus 844 ~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~-~~~~~~l~~h~~~V~~~--s~d~~~l~sgs~dg~I~iwd~~t~~---~~~ 917 (1178)
|++++|++|+.||+|++||+.... ......+.+|...|.++ +++++++++|+.|+.|++||+++++ ...
T Consensus 65 -----~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 139 (377)
T 3dwl_C 65 -----PKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSK 139 (377)
T ss_dssp -----TTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCE
T ss_pred -----CCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeee
Confidence 899999999999999999987433 23566788899999865 7899999999999999999999887 367
Q ss_pred EecC-CCCceEEEEEe-CCCeEEEEeCCCeEEEEeCC------------------CCeEEEEecCCCCCEEEEEEeCCCC
Q 001042 918 ELKG-HDAQVSCVRML-SGERVLTASHDGTVKMWDVR------------------TDTCVATVGRCSSAVLCMEYDDSTG 977 (1178)
Q Consensus 918 ~l~~-h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~------------------~~~~~~~~~~~~~~I~~l~~sp~~~ 977 (1178)
.+.+ |...|.+++|+ ++..+++|+.||+|++||+. .++++..+ .|...|.+++|+|+++
T Consensus 140 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~ 218 (377)
T 3dwl_C 140 HLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGN 218 (377)
T ss_dssp EECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSS
T ss_pred EeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCC
Confidence 7877 99999999999 67899999999999999985 35566666 8899999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCce----EEEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCe--e-----------
Q 001042 978 ILAAGGRDAVANIWDIRAGRQ----MHKFLGHTKWIRSIRMD--RDTVITGSDDWTARMWSISRGT--C----------- 1038 (1178)
Q Consensus 978 ~l~sgs~dg~I~lwD~~~~~~----~~~~~~~~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~--~----------- 1038 (1178)
++++++.||.|++||+++++. +..+.+|...|.+++|+ +.++++|+.++.+ +|+...+. .
T Consensus 219 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 297 (377)
T 3dwl_C 219 ALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKT 297 (377)
T ss_dssp CEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCC
T ss_pred EEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccccc
Confidence 999999999999999999987 78888999999999995 4477777666555 66654211 0
Q ss_pred --------------e---------eEe----------------ccCCCcEEEEEEecCC-C---EEEEEeCCCcEEEEEC
Q 001042 1039 --------------D---------AVL----------------ACHAGPVQCVEYSSSD-R---GIITGSSDGLLRFWEN 1075 (1178)
Q Consensus 1039 --------------~---------~~~----------------~~h~~~I~~l~~spdg-~---~L~sgs~Dg~I~iwd~ 1075 (1178)
. ..+ ..|.+.|+++++.+.+ . .++|||.||.|++||+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 298 SFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp CBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0 001 1289999999976544 3 5999999999999985
No 90
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.98 E-value=1.5e-31 Score=319.72 Aligned_cols=284 Identities=15% Similarity=0.181 Sum_probs=224.5
Q ss_pred cccCCcceEEEEecC-CCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccc
Q 001042 764 ASGIGRSWVQSMFSR-EASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKRE 840 (1178)
Q Consensus 764 ~~gh~~~i~~~aFSp-dg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~ 840 (1178)
..+|...|.+++|+| ++++||+|+.| |+|||+.++.. .....+.||.+.|++|+|+|
T Consensus 115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~-----------------~~~~~~~gH~~~V~~l~f~p--- 174 (435)
T 4e54_B 115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDK-----------------PTFIKGIGAGGSITGLKFNP--- 174 (435)
T ss_dssp EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSC-----------------CEEECCCSSSCCCCEEEECS---
T ss_pred CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCc-----------------eeEEEccCCCCCEEEEEEeC---
Confidence 456778899999999 56799999988 99999987652 13456779999999999984
Q ss_pred eeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeeccc--ccceE--EEecCCCEEEEEeCCCcEEEEECCCCcEE
Q 001042 841 VWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGH--TRTVR--AINSDRGKVVSGSDDQSVLVWDKQTSQLL 916 (1178)
Q Consensus 841 ~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h--~~~V~--~~s~d~~~l~sgs~dg~I~iwd~~t~~~~ 916 (1178)
.++++|+||+.||+|++||++ +.........| ...+. ++++++.++++|+.||.|++||++ ++.+
T Consensus 175 --------~~~~~l~s~s~D~~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~ 243 (435)
T 4e54_B 175 --------LNTNQFYASSMEGTTRLQDFK--GNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKEL 243 (435)
T ss_dssp --------SCTTEEEEECSSSCEEEEETT--SCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBC
T ss_pred --------CCCCEEEEEeCCCEEEEeecc--CCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-ccee
Confidence 478999999999999999986 33332223333 33333 578999999999999999999986 4566
Q ss_pred EEecCCCCceEEEEEe-CC-CeEEEEeCCCeEEEEeCCCCeEEEE---ecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 001042 917 EELKGHDAQVSCVRML-SG-ERVLTASHDGTVKMWDVRTDTCVAT---VGRCSSAVLCMEYDDSTGILAAGGRDAVANIW 991 (1178)
Q Consensus 917 ~~l~~h~~~V~~l~~~-~~-~~l~sgs~dg~V~iwd~~~~~~~~~---~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lw 991 (1178)
..+.+|...|++++|+ ++ ..+++|+.||+|++||+++++.... ..+|...|++++|+|+|++|++|+.||.|++|
T Consensus 244 ~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iw 323 (435)
T 4e54_B 244 WNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVY 323 (435)
T ss_dssp CCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEE
T ss_pred EEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEE
Confidence 7889999999999998 33 4788999999999999988764433 34688999999999999999999999999999
Q ss_pred ECCCCceEEEEecCCcc------EEEEEEc--CCEEEEEe------------CCCcEEEEEcCCCeeeeEec-cCCCcEE
Q 001042 992 DIRAGRQMHKFLGHTKW------IRSIRMD--RDTVITGS------------DDWTARMWSISRGTCDAVLA-CHAGPVQ 1050 (1178)
Q Consensus 992 D~~~~~~~~~~~~~~~~------v~~l~~~--~~~l~sgs------------~dg~I~iwd~~~~~~~~~~~-~h~~~I~ 1050 (1178)
|+++++....+..|... +....++ ++.+++++ .++.|++||..+++.+..+. +|...|.
T Consensus 324 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~ 403 (435)
T 4e54_B 324 SASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGIS 403 (435)
T ss_dssp ESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCC
T ss_pred ECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEE
Confidence 99999888777655431 2223332 23444443 34679999999999888765 6788888
Q ss_pred EE-EEecCCCEEEEEeCCCcEEEEECCCCc
Q 001042 1051 CV-EYSSSDRGIITGSSDGLLRFWENDDGG 1079 (1178)
Q Consensus 1051 ~l-~~spdg~~L~sgs~Dg~I~iwd~~~~~ 1079 (1178)
++ +|+|+|++|++|+ |+.|++|++.+++
T Consensus 404 s~~~fspdg~~lasg~-d~~i~iW~~~~gk 432 (435)
T 4e54_B 404 SLNEFNPMGDTLASAM-GYHILIWSQQEAR 432 (435)
T ss_dssp CEEEECTTSSCEEEEC-SSEEEECCCC---
T ss_pred EEEEECCCCCEEEEEc-CCcEEEEECCcCe
Confidence 87 6999999999876 8899999999874
No 91
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=2.7e-29 Score=298.76 Aligned_cols=264 Identities=21% Similarity=0.376 Sum_probs=228.8
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEE--EecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEE
Q 001042 851 AGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSC 928 (1178)
Q Consensus 851 ~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~ 928 (1178)
+++||+|. |++|+|||...........+.+|...|++ |+++|++|++|+.||+|++||+.+++.+..+.+|...+.+
T Consensus 116 ~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~ 194 (420)
T 4gga_A 116 GNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGS 194 (420)
T ss_dssp TSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred CCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEE
Confidence 45777776 89999999874333333445678888885 5899999999999999999999999999999999999999
Q ss_pred EEEeCCCeEEEEeCCCeEEEEeCCCC-eEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc----eEEEEe
Q 001042 929 VRMLSGERVLTASHDGTVKMWDVRTD-TCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGR----QMHKFL 1003 (1178)
Q Consensus 929 l~~~~~~~l~sgs~dg~V~iwd~~~~-~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~----~~~~~~ 1003 (1178)
+.++ +..+++|+.|+.+++||.... ..+..+.+|...+..+.++++++.+++++.||.+++||..+++ .+....
T Consensus 195 ~s~~-~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~ 273 (420)
T 4gga_A 195 LSWN-SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT 273 (420)
T ss_dssp EEEE-TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEEC
T ss_pred EeeC-CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeec
Confidence 9885 678999999999999998864 4567788999999999999999999999999999999998765 356677
Q ss_pred cCCccEEEEEEcC---CEEEE--EeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEe--CCCcEEEEECC
Q 001042 1004 GHTKWIRSIRMDR---DTVIT--GSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGS--SDGLLRFWEND 1076 (1178)
Q Consensus 1004 ~~~~~v~~l~~~~---~~l~s--gs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs--~Dg~I~iwd~~ 1076 (1178)
.|...|.+++|.+ +.+++ |+.|++|++||+.++++...+..| ..+.++.|+++++.+++++ .||.|++||+.
T Consensus 274 ~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~ 352 (420)
T 4gga_A 274 QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYP 352 (420)
T ss_dssp CCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETT
T ss_pred ccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECC
Confidence 8999999999954 35655 457999999999999999888754 5789999999999988765 79999999999
Q ss_pred CCceEEEEEecccCCcEEEE--ecCCCEEEEEeCCCcEEEEEcCC
Q 001042 1077 DGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQ 1119 (1178)
Q Consensus 1077 ~~~~~~~~~~~~h~~~i~~i--s~dg~~Lasgs~Dg~I~iwd~~~ 1119 (1178)
++ .++..+.+|...|.++ +|+|++||+|+.|++|++||+..
T Consensus 353 ~~--~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 353 TM--AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 395 (420)
T ss_dssp TC--CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred CC--cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 98 6788899999999876 79999999999999999999864
No 92
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.97 E-value=2e-29 Score=285.06 Aligned_cols=248 Identities=19% Similarity=0.324 Sum_probs=211.2
Q ss_pred EEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCC--CeEEEEecCCCCCEEEEEEeC--CCCEEEEEeCCCeEEEE
Q 001042 917 EELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRT--DTCVATVGRCSSAVLCMEYDD--STGILAAGGRDAVANIW 991 (1178)
Q Consensus 917 ~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~--~~~~~~~~~~~~~I~~l~~sp--~~~~l~sgs~dg~I~lw 991 (1178)
..+.+|...|++++|+ ++++|++|+.||+|++||+.+ ++.+..+.+|...|.+++|++ ++++|++|+.||+|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 4577899999999999 789999999999999999975 367788999999999999986 48999999999999999
Q ss_pred ECCCCc--eEEEEecCCccEEEEEEcC----CEEEEEeCCCcEEEEEcCCCe--eeeEeccCCCcEEEEEEecC------
Q 001042 992 DIRAGR--QMHKFLGHTKWIRSIRMDR----DTVITGSDDWTARMWSISRGT--CDAVLACHAGPVQCVEYSSS------ 1057 (1178)
Q Consensus 992 D~~~~~--~~~~~~~~~~~v~~l~~~~----~~l~sgs~dg~I~iwd~~~~~--~~~~~~~h~~~I~~l~~spd------ 1057 (1178)
|+++++ .+..+.+|...|.+++|++ .++++++.||.|++||++++. ....+.+|...|++++|+|+
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 162 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence 999874 5677788999999999954 589999999999999998763 24567789999999999997
Q ss_pred -------CCEEEEEeCCCcEEEEECCCCc--eEEEEEecccCCcEEEE--ecC---CCEEEEEeCCCcEEEEEcCCCccc
Q 001042 1058 -------DRGIITGSSDGLLRFWENDDGG--IKCVKNVTIHSSAILSI--NAG---DHWLGIGAADNSMSLFHRPQERLG 1123 (1178)
Q Consensus 1058 -------g~~L~sgs~Dg~I~iwd~~~~~--~~~~~~~~~h~~~i~~i--s~d---g~~Lasgs~Dg~I~iwd~~~~~~~ 1123 (1178)
+++|++|+.|++|++||++++. ......+.+|...|.++ +|+ +.+||+|+.|++|++||+....
T Consensus 163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~-- 240 (297)
T 2pm7_B 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQ-- 240 (297)
T ss_dssp -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT--
T ss_pred cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCC--
Confidence 5799999999999999998764 23567788999999877 677 4899999999999999987421
Q ss_pred cccCCCCCcccee-EeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001042 1124 GFSGTGSKMSGWQ-LYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEAT 1175 (1178)
Q Consensus 1124 ~~~~~g~~~~~~~-~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~ 1175 (1178)
+ .|. ......+|...|.+++|+|+|++||+++.||+|++|+..
T Consensus 241 -----~----~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 241 -----G----PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp -----S----CCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred -----C----ccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 1 011 111225678899999999999999999999999999976
No 93
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=1.8e-30 Score=296.47 Aligned_cols=256 Identities=21% Similarity=0.343 Sum_probs=210.2
Q ss_pred EEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEE--ec--CCCEE
Q 001042 821 RIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NS--DRGKV 896 (1178)
Q Consensus 821 ~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~--s~--d~~~l 896 (1178)
..+.+|.+.|++++|+ ++|++||+|+.|++|++||+..........+.+|...|.++ ++ ++++|
T Consensus 7 ~~~~~H~~~V~~v~~s------------~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l 74 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMD------------YYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNIL 74 (316)
T ss_dssp -------CCEEEEEEC------------GGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCE
T ss_pred eecccccCeEEEeeEc------------CCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEE
Confidence 4567999999999998 89999999999999999998633334567899999999976 43 48999
Q ss_pred EEEeCCCcEEEEECCCC--cEEEEecCCCCceEEEEEeC---CCeEEEEeCCCeEEEEeCCCCeE---EEEecCCCCCEE
Q 001042 897 VSGSDDQSVLVWDKQTS--QLLEELKGHDAQVSCVRMLS---GERVLTASHDGTVKMWDVRTDTC---VATVGRCSSAVL 968 (1178)
Q Consensus 897 ~sgs~dg~I~iwd~~t~--~~~~~l~~h~~~V~~l~~~~---~~~l~sgs~dg~V~iwd~~~~~~---~~~~~~~~~~I~ 968 (1178)
++|+.|++|++||++++ +....+.+|...|.+++|++ +..+++|+.||+|++||++++.. ...+..|...+.
T Consensus 75 ~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~ 154 (316)
T 3bg1_A 75 ASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCN 154 (316)
T ss_dssp EEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBC
T ss_pred EEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcc
Confidence 99999999999999987 46677889999999999984 67899999999999999987632 344567888999
Q ss_pred EEEEeCC-----------------CCEEEEEeCCCeEEEEECCCC---ceEEEEecCCccEEEEEEcC------CEEEEE
Q 001042 969 CMEYDDS-----------------TGILAAGGRDAVANIWDIRAG---RQMHKFLGHTKWIRSIRMDR------DTVITG 1022 (1178)
Q Consensus 969 ~l~~sp~-----------------~~~l~sgs~dg~I~lwD~~~~---~~~~~~~~~~~~v~~l~~~~------~~l~sg 1022 (1178)
+++|+|+ +++|++|+.|+.|++||++++ +.+..+.+|...|.+++|++ ..|++|
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~ 234 (316)
T 3bg1_A 155 AVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASC 234 (316)
T ss_dssp CCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEE
T ss_pred eEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEE
Confidence 9999997 478999999999999999765 46677889999999999965 479999
Q ss_pred eCCCcEEEEEcCCC---e-eeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECC-CCceEEEEEecc
Q 001042 1023 SDDWTARMWSISRG---T-CDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWEND-DGGIKCVKNVTI 1088 (1178)
Q Consensus 1023 s~dg~I~iwd~~~~---~-~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~-~~~~~~~~~~~~ 1088 (1178)
+.||+|++||+.+. . ....+..|.+.|++++|+|++++|++|+.||+|++|+.. .+...++..+..
T Consensus 235 s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~g~~~~~~~~~~ 305 (316)
T 3bg1_A 235 SQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVNK 305 (316)
T ss_dssp ETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECTTSCEEEEEECC-
T ss_pred cCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECCCCcEEEeeeccC
Confidence 99999999998763 1 234556789999999999999999999999999999986 444455555543
No 94
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.1e-29 Score=293.33 Aligned_cols=248 Identities=20% Similarity=0.303 Sum_probs=216.4
Q ss_pred ceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEE--ecC--CC
Q 001042 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSD--RG 894 (1178)
Q Consensus 819 ~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~--s~d--~~ 894 (1178)
.+.++.+|.+.|++++|+ +++++||+|+.||.|++||+..........+.+|...|.++ +++ ++
T Consensus 3 ~~~~~~~h~~~v~~~~~s------------~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 70 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLD------------YYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGT 70 (379)
T ss_dssp --CCEEECCCCEEEEEEC------------SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCS
T ss_pred ccEEecCCcccEEEEEEc------------CCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCC
Confidence 567899999999999998 89999999999999999998655667778899999999865 555 89
Q ss_pred EEEEEeCCCcEEEEECCCCc--EEEEecCCCCceEEEEEe-C--CCeEEEEeCCCeEEEEeCCCCe--EEEEecCCCCCE
Q 001042 895 KVVSGSDDQSVLVWDKQTSQ--LLEELKGHDAQVSCVRML-S--GERVLTASHDGTVKMWDVRTDT--CVATVGRCSSAV 967 (1178)
Q Consensus 895 ~l~sgs~dg~I~iwd~~t~~--~~~~l~~h~~~V~~l~~~-~--~~~l~sgs~dg~V~iwd~~~~~--~~~~~~~~~~~I 967 (1178)
+|++|+.||.|++||+.+++ .+..+..|...|.+++|+ + +..+++++.||.|++||++++. ....+..|...|
T Consensus 71 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v 150 (379)
T 3jrp_A 71 ILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGV 150 (379)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCE
T ss_pred EEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCce
Confidence 99999999999999999987 777888999999999999 4 7899999999999999998873 345567889999
Q ss_pred EEEEEeC-------------CCCEEEEEeCCCeEEEEECCCCc----eEEEEecCCccEEEEEEc-----CCEEEEEeCC
Q 001042 968 LCMEYDD-------------STGILAAGGRDAVANIWDIRAGR----QMHKFLGHTKWIRSIRMD-----RDTVITGSDD 1025 (1178)
Q Consensus 968 ~~l~~sp-------------~~~~l~sgs~dg~I~lwD~~~~~----~~~~~~~~~~~v~~l~~~-----~~~l~sgs~d 1025 (1178)
.+++|+| ++..+++|+.||.|++||++++. ....+.+|...|.+++|+ ++++++++.|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d 230 (379)
T 3jrp_A 151 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD 230 (379)
T ss_dssp EEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT
T ss_pred EEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCC
Confidence 9999999 69999999999999999998765 446677899999999995 4589999999
Q ss_pred CcEEEEEcCCCe---eeeE--eccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 001042 1026 WTARMWSISRGT---CDAV--LACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDG 1078 (1178)
Q Consensus 1026 g~I~iwd~~~~~---~~~~--~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~ 1078 (1178)
|.|++||++++. .... ...|...|++++|+|+|++|++++.||.|++|++..+
T Consensus 231 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 231 RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp SCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred CEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 999999998864 2222 2348889999999999999999999999999999854
No 95
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=2.3e-29 Score=289.16 Aligned_cols=279 Identities=15% Similarity=0.236 Sum_probs=241.6
Q ss_pred eEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCC-ceeeEeecccccceEE--EecCCC-E
Q 001042 820 IRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRG-SELRATLKGHTRTVRA--INSDRG-K 895 (1178)
Q Consensus 820 ~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~-~~~~~~l~~h~~~V~~--~s~d~~-~ 895 (1178)
+....+|.+.|++++|+ |++++|++|+.||.|++||+.... ........+|...|.+ ++++++ +
T Consensus 4 ~~~~~~h~~~v~~~~~s------------~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 71 (342)
T 1yfq_A 4 VQIEQAPKDYISDIKII------------PSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQ 71 (342)
T ss_dssp EECSSCCSSCEEEEEEE------------GGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEE
T ss_pred eecccCCCCcEEEEEEc------------CCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcE
Confidence 44567899999999998 889999999999999999987333 1123455689998885 588999 9
Q ss_pred EEEEeCCCcEEEEEC-CCCcEEEEecC--CCCceEEEEEeCCCeEEEEeCCCeEEEEeCCC---------CeEEEEecCC
Q 001042 896 VVSGSDDQSVLVWDK-QTSQLLEELKG--HDAQVSCVRMLSGERVLTASHDGTVKMWDVRT---------DTCVATVGRC 963 (1178)
Q Consensus 896 l~sgs~dg~I~iwd~-~t~~~~~~l~~--h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~---------~~~~~~~~~~ 963 (1178)
+++|+.||.|++||+ .+++. ..+.+ |...|.+++|++++.+++++.||.|++||+++ ++++..+. +
T Consensus 72 l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~ 149 (342)
T 1yfq_A 72 IYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-V 149 (342)
T ss_dssp EEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-S
T ss_pred EEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-e
Confidence 999999999999999 87765 77888 99999999999888999999999999999987 66555554 7
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC-Cce--EEEEecCCccEEEEEEcC---CEEEEEeCCCcEEEEEcCCC-
Q 001042 964 SSAVLCMEYDDSTGILAAGGRDAVANIWDIRA-GRQ--MHKFLGHTKWIRSIRMDR---DTVITGSDDWTARMWSISRG- 1036 (1178)
Q Consensus 964 ~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~-~~~--~~~~~~~~~~v~~l~~~~---~~l~sgs~dg~I~iwd~~~~- 1036 (1178)
...+.+++|++++ +++++.||.|++||+++ +.. ......+...+.+++|++ +.+++++.||.|++||++.+
T Consensus 150 ~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~ 227 (342)
T 1yfq_A 150 KNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQG 227 (342)
T ss_dssp CCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTC
T ss_pred CCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCC
Confidence 8899999999987 99999999999999998 553 344556888999999965 59999999999999999887
Q ss_pred -----eeeeEeccCCC---------cEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEeccc-CCcEEEEecCCC
Q 001042 1037 -----TCDAVLACHAG---------PVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIH-SSAILSINAGDH 1101 (1178)
Q Consensus 1037 -----~~~~~~~~h~~---------~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h-~~~i~~is~dg~ 1101 (1178)
+....+..|.. .|++++|+|++++|++|+.||.|++||+.++ ..+..+.+| ...|.++.++++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~h~~~v~~~~~~~~ 305 (342)
T 1yfq_A 228 DDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR--KKIKNFAKFNEDSVVKIACSDN 305 (342)
T ss_dssp CSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT--EEEEECCCCSSSEEEEEEECSS
T ss_pred cccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH--hHhhhhhcccCCCceEecCCCC
Confidence 77888888865 9999999999999999999999999999998 677888888 999998889999
Q ss_pred EEEEEeCCCc-EEEEE
Q 001042 1102 WLGIGAADNS-MSLFH 1116 (1178)
Q Consensus 1102 ~Lasgs~Dg~-I~iwd 1116 (1178)
+|++|+.||+ .+.|.
T Consensus 306 ~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 306 ILCLATSDDTFKTNAA 321 (342)
T ss_dssp EEEEEEECTHHHHCSS
T ss_pred eEEEEecCCccccccc
Confidence 9999999998 55554
No 96
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=8.5e-30 Score=291.76 Aligned_cols=302 Identities=15% Similarity=0.163 Sum_probs=227.7
Q ss_pred ccccCCcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccc
Q 001042 763 EASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKRE 840 (1178)
Q Consensus 763 ~~~gh~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~ 840 (1178)
...||...|.+++|+|||+++|+++.| |++||+.++... ...+..+.+|.+.|++++|+|.
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~---------------~~~~~~~~~~~~~v~~~~~~~~-- 68 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSN---------------WELSDSWRAHDSSIVAIDWASP-- 68 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCC---------------EEEEEEEECCSSCEEEEEECCG--
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCc---------------ceecceeccCCCcEEEEEEcCC--
Confidence 357899999999999999999999988 999999865421 1256788999999999999831
Q ss_pred eeccccccCCCCEEEEEeCCCcEEEEcCCCCCc-------eeeEeecccccceEEE--ecC--CCEEEEEeCCCcEEEEE
Q 001042 841 VWDLVGDREDAGFFISGSTDCLVKIWDPSLRGS-------ELRATLKGHTRTVRAI--NSD--RGKVVSGSDDQSVLVWD 909 (1178)
Q Consensus 841 ~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~-------~~~~~l~~h~~~V~~~--s~d--~~~l~sgs~dg~I~iwd 909 (1178)
.|+++|++|+.||+|++||+..... .....+.+|...|.++ +++ +.++++++.||.|++||
T Consensus 69 --------~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd 140 (351)
T 3f3f_A 69 --------EYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYD 140 (351)
T ss_dssp --------GGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEE
T ss_pred --------CCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEec
Confidence 1699999999999999999873321 4567888999999864 788 99999999999999999
Q ss_pred CCCCcEEEEec-------------CCCCceEEEEEeC----CCeEEEEeCCCeEEEEeCCCCeE--EEEecCCCCCEEEE
Q 001042 910 KQTSQLLEELK-------------GHDAQVSCVRMLS----GERVLTASHDGTVKMWDVRTDTC--VATVGRCSSAVLCM 970 (1178)
Q Consensus 910 ~~t~~~~~~l~-------------~h~~~V~~l~~~~----~~~l~sgs~dg~V~iwd~~~~~~--~~~~~~~~~~I~~l 970 (1178)
+.+++.+..+. .|...+.+++|++ +..+++++.|+.+.+|+...++. +..+.+|...|.++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~ 220 (351)
T 3f3f_A 141 ALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSI 220 (351)
T ss_dssp CSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEE
T ss_pred CCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEE
Confidence 98876543332 6888999999983 78999999999999998888765 67778899999999
Q ss_pred EEeCCC----CEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEc------CCEEEEEeCCCcEEEEEcCCCeeee
Q 001042 971 EYDDST----GILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMD------RDTVITGSDDWTARMWSISRGTCDA 1040 (1178)
Q Consensus 971 ~~sp~~----~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~------~~~l~sgs~dg~I~iwd~~~~~~~~ 1040 (1178)
+|+|++ +++++|+.||.|++||++++........+.......... ......+...+.+.+|+....+.+.
T Consensus 221 ~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (351)
T 3f3f_A 221 SWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLS 300 (351)
T ss_dssp EECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEE
T ss_pred EECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEE
Confidence 999998 899999999999999998876544433333222222221 1222334455567777777788888
Q ss_pred EeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCC-ceEEEEEeccc
Q 001042 1041 VLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDG-GIKCVKNVTIH 1089 (1178)
Q Consensus 1041 ~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~-~~~~~~~~~~h 1089 (1178)
.+.+|.+.|++++|+|++++|++|+.||.|++||+.++ ...++..+..|
T Consensus 301 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~ 350 (351)
T 3f3f_A 301 EHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMSVITAQ 350 (351)
T ss_dssp EECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEEEEC--
T ss_pred EEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhheeehccc
Confidence 99999999999999999999999999999999999986 34455554433
No 97
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=5.1e-30 Score=299.04 Aligned_cols=298 Identities=12% Similarity=0.106 Sum_probs=223.8
Q ss_pred CCcceEEEEecCCCCcccccccc---------eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeee
Q 001042 767 IGRSWVQSMFSREASSRSHSFSR---------VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVT 837 (1178)
Q Consensus 767 h~~~i~~~aFSpdg~~las~~~d---------I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~ 837 (1178)
.+-+|.+++|+|||++|++|+++ |++|+++.+..... ..........+.+|...|.++++..
T Consensus 13 ~g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~---------~~~~~~~~~~l~~~~~~v~s~~~~~ 83 (365)
T 4h5i_A 13 VGYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEK---------EQFHILSEFALEDNDDSPTAIDASK 83 (365)
T ss_dssp CSSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHH---------HHEEEEEEEECCTTSCCCCEEEEET
T ss_pred CCCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCccee---------eeeeeeeEEEccCCCCceEEEEeCC
Confidence 35689999999999999998642 89999986542100 0000012235788999999998752
Q ss_pred ccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceee--Eeec-----cccc--ceEEEecCCCEEEEEe--CCCcEE
Q 001042 838 KREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELR--ATLK-----GHTR--TVRAINSDRGKVVSGS--DDQSVL 906 (1178)
Q Consensus 838 ~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~--~~l~-----~h~~--~V~~~s~d~~~l~sgs--~dg~I~ 906 (1178)
. .-+.+.+.++..|++|+.|+++|+|++........ .... .+.. .+.+|+|||+++++++ .|++|+
T Consensus 84 ~---~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~ 160 (365)
T 4h5i_A 84 G---IILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMR 160 (365)
T ss_dssp T---EEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEE
T ss_pred C---EEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEE
Confidence 1 11122223334444556688899999763332221 1111 1222 2457899999987554 689999
Q ss_pred EEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEE--ecCCCCCEEEEEEeCCCCEEEEEe
Q 001042 907 VWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVAT--VGRCSSAVLCMEYDDSTGILAAGG 983 (1178)
Q Consensus 907 iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~--~~~~~~~I~~l~~sp~~~~l~sgs 983 (1178)
|||+.+++.+..+. |...|.+++|+ ++.++++++. +.+++|+..+++.+.. ...|...|.+++|+|+++.+++++
T Consensus 161 iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s 238 (365)
T 4h5i_A 161 IIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAAS 238 (365)
T ss_dssp EEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEE
T ss_pred EeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEe
Confidence 99999999988886 77889999999 6777777775 5566777777766543 345778899999999999999999
Q ss_pred CCC----eEEEEECCCCce----EEEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCeeeeEe-ccCCCcEEEE
Q 001042 984 RDA----VANIWDIRAGRQ----MHKFLGHTKWIRSIRMD--RDTVITGSDDWTARMWSISRGTCDAVL-ACHAGPVQCV 1052 (1178)
Q Consensus 984 ~dg----~I~lwD~~~~~~----~~~~~~~~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~-~~h~~~I~~l 1052 (1178)
.|+ .++.||+..+.. ...+.+|...|++++|+ +++|++|+.|++|++||+++++++..+ .+|.+.|+++
T Consensus 239 ~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v 318 (365)
T 4h5i_A 239 LKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEV 318 (365)
T ss_dssp ESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEE
T ss_pred cCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEE
Confidence 887 688999877654 34577899999999995 459999999999999999999999875 7899999999
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCC
Q 001042 1053 EYSSSDRGIITGSSDGLLRFWENDDG 1078 (1178)
Q Consensus 1053 ~~spdg~~L~sgs~Dg~I~iwd~~~~ 1078 (1178)
+|+|||++|++||.|++|+|||+...
T Consensus 319 ~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 319 TISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99999999999999999999999654
No 98
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=2.4e-28 Score=277.30 Aligned_cols=271 Identities=20% Similarity=0.357 Sum_probs=224.8
Q ss_pred ceEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEec--CCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEec
Q 001042 885 TVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELK--GHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVG 961 (1178)
Q Consensus 885 ~V~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~--~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~ 961 (1178)
.+.+||+++ .|++| .|++|+|||+.+++++..+. +|...|++++|+ +++++++|+.||+|++||+++++.+..+.
T Consensus 29 ~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~ 106 (318)
T 4ggc_A 29 NLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT 106 (318)
T ss_dssp BCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred eEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEec
Confidence 345788775 66665 58999999999999888665 678889999999 78899999999999999999999999999
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-ceEEEEecCCccEEEEEE--cCCEEEEEeCCCcEEEEEcCCCee
Q 001042 962 RCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAG-RQMHKFLGHTKWIRSIRM--DRDTVITGSDDWTARMWSISRGTC 1038 (1178)
Q Consensus 962 ~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~-~~~~~~~~~~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~ 1038 (1178)
+|...+.++.+ ++..+++|+.++.+++|+..++ ..+..+.+|...+.++.+ +++++++++.||.|++||+++++.
T Consensus 107 ~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 184 (318)
T 4ggc_A 107 SHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG 184 (318)
T ss_dssp CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTT
T ss_pred CccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcc
Confidence 99988877655 5678999999999999999876 456778899999999998 456999999999999999988653
Q ss_pred ----eeEeccCCCcEEEEEEecCCCEE---EEEeCCCcEEEEECCCCceEEEEEecccCCcE--EEEecCCCEEEEEe--
Q 001042 1039 ----DAVLACHAGPVQCVEYSSSDRGI---ITGSSDGLLRFWENDDGGIKCVKNVTIHSSAI--LSINAGDHWLGIGA-- 1107 (1178)
Q Consensus 1039 ----~~~~~~h~~~I~~l~~spdg~~L---~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i--~~is~dg~~Lasgs-- 1107 (1178)
......|.+.|.++++++++..+ ++++.++.|++||..... ..... .+...+ ..+++++..+++++
T Consensus 185 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~--~~~~~-~~~~~v~~~~~~~~~~~~~~~sg~ 261 (318)
T 4ggc_A 185 GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA--CLSAV-DAHSQVCSILWSPHYKELISGHGF 261 (318)
T ss_dssp BSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCC--EEEEE-ECSSCEEEEEEETTTTEEEEEECT
T ss_pred cccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccc--ccccc-cceeeeeeeeecccccceEEEEEc
Confidence 34556688899999999987643 466788999999998874 22222 344444 44478888877654
Q ss_pred CCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001042 1108 ADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATIN 1177 (1178)
Q Consensus 1108 ~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~tg 1177 (1178)
.|+.|++||+.++ +++.++.+|.+.|++++|+|||++|||||.||+|+|||+...
T Consensus 262 ~d~~i~iwd~~~~---------------~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 262 AQNQLVIWKYPTM---------------AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp TTCCEEEEETTTC---------------CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred CCCEEEEEECCCC---------------cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 7999999999743 566778899999999999999999999999999999998753
No 99
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=2.4e-29 Score=287.99 Aligned_cols=284 Identities=19% Similarity=0.255 Sum_probs=220.8
Q ss_pred EeecccccceEEE--ecCCCEEEEEeCCCcEEEEECCCC----cEEEEecCCCCceEEEEEeC---CCeEEEEeCCCeEE
Q 001042 877 ATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTS----QLLEELKGHDAQVSCVRMLS---GERVLTASHDGTVK 947 (1178)
Q Consensus 877 ~~l~~h~~~V~~~--s~d~~~l~sgs~dg~I~iwd~~t~----~~~~~l~~h~~~V~~l~~~~---~~~l~sgs~dg~V~ 947 (1178)
..+.+|...|.++ ++++++|++|+.||.|++||+.++ +....+.+|...|++++|++ +..+++|+.||+|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 4678999999965 799999999999999999999876 46777889999999999984 88999999999999
Q ss_pred EEeCCCC---------eEEEEecCCCCCEEEEEEeCC--CCEEEEEeCCCeEEEEECCCCceEEEEe-------------
Q 001042 948 MWDVRTD---------TCVATVGRCSSAVLCMEYDDS--TGILAAGGRDAVANIWDIRAGRQMHKFL------------- 1003 (1178)
Q Consensus 948 iwd~~~~---------~~~~~~~~~~~~I~~l~~sp~--~~~l~sgs~dg~I~lwD~~~~~~~~~~~------------- 1003 (1178)
+||++++ +.+..+..|...|.+++|+|+ ++++++++.||.|++||+++++.+..+.
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 9999887 667888899999999999999 9999999999999999999887544332
Q ss_pred cCCccEEEEEEc-----CCEEEEEeCCCcEEEEEcCCCee--eeEeccCCCcEEEEEEecCC----CEEEEEeCCCcEEE
Q 001042 1004 GHTKWIRSIRMD-----RDTVITGSDDWTARMWSISRGTC--DAVLACHAGPVQCVEYSSSD----RGIITGSSDGLLRF 1072 (1178)
Q Consensus 1004 ~~~~~v~~l~~~-----~~~l~sgs~dg~I~iwd~~~~~~--~~~~~~h~~~I~~l~~spdg----~~L~sgs~Dg~I~i 1072 (1178)
.|...+.+++|+ ++.+++++.|+.+.+|+...++. ...+.+|...|++++|+|++ ++|++|+.||.|++
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i 244 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI 244 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence 577789999994 56999999999998888877765 67788899999999999998 89999999999999
Q ss_pred EECCCCceEEEEEecccCCcEE--EEecCCCEEEEEeCC----CcEEEEEcCCCccccccCCCCCccceeEeeccCCCcc
Q 001042 1073 WENDDGGIKCVKNVTIHSSAIL--SINAGDHWLGIGAAD----NSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVA 1146 (1178)
Q Consensus 1073 wd~~~~~~~~~~~~~~h~~~i~--~is~dg~~Lasgs~D----g~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~ 1146 (1178)
||+.++... .....+..... ..++.....+.+..+ ..+.+|+.. ..+....+.+|..
T Consensus 245 wd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~h~~ 307 (351)
T 3f3f_A 245 FKITEKLSP--LASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNL---------------QVELLSEHDDHNG 307 (351)
T ss_dssp EEEEECC-----------------------------------------CCSE---------------EEEEEEEECTTSS
T ss_pred EeCCCCcCc--cccCCcccceeccCCCcccccccccccccccceeeeecccc---------------cccEEEEEecccc
Confidence 999876322 22222222221 123334444444332 233333322 2366777889999
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001042 1147 VVRCIASDLERKRICSGGRNGLLRLWEATIN 1177 (1178)
Q Consensus 1147 ~V~~lafspdg~~Las~s~Dg~V~IWdv~tg 1177 (1178)
.|++++|+|++++|++|+.||.|++||+.++
T Consensus 308 ~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 308 EVWSVSWNLTGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp CEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred cEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence 9999999999999999999999999999876
No 100
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=3.5e-29 Score=299.22 Aligned_cols=289 Identities=14% Similarity=0.239 Sum_probs=227.9
Q ss_pred cccceEE--EecCCCEEEEEeCCCcEEEEECCCCc-----------EEEEecCCC------------CceEEEEEeC-C-
Q 001042 882 HTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQ-----------LLEELKGHD------------AQVSCVRMLS-G- 934 (1178)
Q Consensus 882 h~~~V~~--~s~d~~~l~sgs~dg~I~iwd~~t~~-----------~~~~l~~h~------------~~V~~l~~~~-~- 934 (1178)
|.+.|.+ |+++|++|++|+.||.|++||+.+++ ....+.+|. ..|++++|++ +
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 5677775 58999999999999999999999877 577889998 8899999994 4
Q ss_pred -CeEEEEeCCCeEEEEeCCCCeEE---------------------------------------EE-ecCCCCCEEEEEEe
Q 001042 935 -ERVLTASHDGTVKMWDVRTDTCV---------------------------------------AT-VGRCSSAVLCMEYD 973 (1178)
Q Consensus 935 -~~l~sgs~dg~V~iwd~~~~~~~---------------------------------------~~-~~~~~~~I~~l~~s 973 (1178)
..+++++.||+|++||+.++... .. ..+|...|.+++|+
T Consensus 107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 186 (447)
T 3dw8_B 107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN 186 (447)
T ss_dssp SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence 68999999999999999765432 12 35789999999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCC-ceEE-------EEecCCccEEEEEEcC---CEEEEEeCCCcEEEEEcCCCee----
Q 001042 974 DSTGILAAGGRDAVANIWDIRAG-RQMH-------KFLGHTKWIRSIRMDR---DTVITGSDDWTARMWSISRGTC---- 1038 (1178)
Q Consensus 974 p~~~~l~sgs~dg~I~lwD~~~~-~~~~-------~~~~~~~~v~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~---- 1038 (1178)
|+++++++| .||.|++||+++. +.+. .+.+|...|.+++|++ +.+++|+.||.|++||+++++.
T Consensus 187 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 265 (447)
T 3dw8_B 187 SDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRH 265 (447)
T ss_dssp TTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTT
T ss_pred CCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccce
Confidence 999999998 7999999999954 4444 2457899999999964 6899999999999999999887
Q ss_pred eeEeccCCC------------cEEEEEEecCCCEEEEEeCCCcEEEEECCC-CceEEEEEecccCCcE------------
Q 001042 1039 DAVLACHAG------------PVQCVEYSSSDRGIITGSSDGLLRFWENDD-GGIKCVKNVTIHSSAI------------ 1093 (1178)
Q Consensus 1039 ~~~~~~h~~------------~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~-~~~~~~~~~~~h~~~i------------ 1093 (1178)
...+..|.. .|++++|+|+|++|++++. |.|++||+.+ + ..+..+.+|...+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~i 342 (447)
T 3dw8_B 266 SKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMEN--RPVETYQVHEYLRSKLCSLYENDCI 342 (447)
T ss_dssp CEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCS--SCSCCEESCGGGTTTHHHHHHTSGG
T ss_pred eeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCc--cccceeecccccccccccccccccc
Confidence 788888876 8999999999999999998 9999999987 5 4555666665311
Q ss_pred -----EEEecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCcc-----------------ceeEeeccCCCcccEEEE
Q 001042 1094 -----LSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMS-----------------GWQLYRTPQKTVAVVRCI 1151 (1178)
Q Consensus 1094 -----~~is~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~-----------------~~~~~~~~~~h~~~V~~l 1151 (1178)
.+++|++++|++|+.||.|++||+.+++............ ..........+...|.++
T Consensus 343 ~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 422 (447)
T 3dw8_B 343 FDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHT 422 (447)
T ss_dssp GCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEE
T ss_pred ccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEE
Confidence 5789999999999999999999998765432211110000 000111122445679999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECC
Q 001042 1152 ASDLERKRICSGGRNGLLRLWEAT 1175 (1178)
Q Consensus 1152 afspdg~~Las~s~Dg~V~IWdv~ 1175 (1178)
+|+|+|++||+++.|+ +.+|...
T Consensus 423 ~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 423 AWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp EECSSSSEEEEECSSC-EEEEECC
T ss_pred EECCCCCEEEEEecce-eeeeccc
Confidence 9999999999998775 7888754
No 101
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=9e-29 Score=284.21 Aligned_cols=272 Identities=13% Similarity=0.110 Sum_probs=234.2
Q ss_pred EeecccccceEE--EecCCCEEEEEeCCCcEEEEECCCCc---EEEEecCCCCceEEEEEe-CCC-eEEEEeCCCeEEEE
Q 001042 877 ATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQ---LLEELKGHDAQVSCVRML-SGE-RVLTASHDGTVKMW 949 (1178)
Q Consensus 877 ~~l~~h~~~V~~--~s~d~~~l~sgs~dg~I~iwd~~t~~---~~~~l~~h~~~V~~l~~~-~~~-~l~sgs~dg~V~iw 949 (1178)
....+|...|.+ ++++++++++++.||.|++||+.+++ ....+.+|...|.+++|+ ++. .+++|+.||.|++|
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w 84 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV 84 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEE
Confidence 345689999986 58999999999999999999998887 345566899999999999 788 89999999999999
Q ss_pred eC-CCCeEEEEecC--CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC---------CceEEEEecCCccEEEEEEcCC
Q 001042 950 DV-RTDTCVATVGR--CSSAVLCMEYDDSTGILAAGGRDAVANIWDIRA---------GRQMHKFLGHTKWIRSIRMDRD 1017 (1178)
Q Consensus 950 d~-~~~~~~~~~~~--~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~---------~~~~~~~~~~~~~v~~l~~~~~ 1017 (1178)
|+ .+++. ..+.. |...|.+++|+| ++.+++++.||.|++||+++ ++.+..+. |...+.+++++++
T Consensus 85 d~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~ 161 (342)
T 1yfq_A 85 DLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSS 161 (342)
T ss_dssp CSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSS
T ss_pred EeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCC
Confidence 99 87765 66777 999999999999 99999999999999999987 66666665 8889999999999
Q ss_pred EEEEEeCCCcEEEEEcCC-Cee--eeEeccCCCcEEEEEEec-CCCEEEEEeCCCcEEEEECCCC--c--eEEEEEeccc
Q 001042 1018 TVITGSDDWTARMWSISR-GTC--DAVLACHAGPVQCVEYSS-SDRGIITGSSDGLLRFWENDDG--G--IKCVKNVTIH 1089 (1178)
Q Consensus 1018 ~l~sgs~dg~I~iwd~~~-~~~--~~~~~~h~~~I~~l~~sp-dg~~L~sgs~Dg~I~iwd~~~~--~--~~~~~~~~~h 1089 (1178)
.+++++.||.|++||+++ +.. ......|...+.+++|+| +++++++|+.||.|++|+++.+ . ......+..|
T Consensus 162 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~ 241 (342)
T 1yfq_A 162 RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH 241 (342)
T ss_dssp EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred cEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecc
Confidence 999999999999999988 543 334556888999999999 9999999999999999999875 1 1344455566
Q ss_pred CC---------cEEEE--ecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCC-cccEEEEEEcCCC
Q 001042 1090 SS---------AILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKT-VAVVRCIASDLER 1157 (1178)
Q Consensus 1090 ~~---------~i~~i--s~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h-~~~V~~lafspdg 1157 (1178)
.. .|.++ +|++++|++|+.||.|++||+.++ +....+.+| ...|++++ |+|
T Consensus 242 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~---------------~~~~~~~~~h~~~v~~~~--~~~ 304 (342)
T 1yfq_A 242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR---------------KKIKNFAKFNEDSVVKIA--CSD 304 (342)
T ss_dssp CCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT---------------EEEEECCCCSSSEEEEEE--ECS
T ss_pred cccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH---------------hHhhhhhcccCCCceEec--CCC
Confidence 44 77665 789999999999999999999743 566677788 99999999 999
Q ss_pred CEEEEEeCCCc
Q 001042 1158 KRICSGGRNGL 1168 (1178)
Q Consensus 1158 ~~Las~s~Dg~ 1168 (1178)
++|++|+.||+
T Consensus 305 ~~l~s~s~Dg~ 315 (342)
T 1yfq_A 305 NILCLATSDDT 315 (342)
T ss_dssp SEEEEEEECTH
T ss_pred CeEEEEecCCc
Confidence 99999999999
No 102
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=8.7e-29 Score=286.53 Aligned_cols=286 Identities=15% Similarity=0.181 Sum_probs=239.9
Q ss_pred CceeeEeecccccceEEE--ecC---CCEEEEEeCCCcEEEEECCC-CcEE-EEecCCCCceEEEEEe-CCCeEEEEeCC
Q 001042 872 GSELRATLKGHTRTVRAI--NSD---RGKVVSGSDDQSVLVWDKQT-SQLL-EELKGHDAQVSCVRML-SGERVLTASHD 943 (1178)
Q Consensus 872 ~~~~~~~l~~h~~~V~~~--s~d---~~~l~sgs~dg~I~iwd~~t-~~~~-~~l~~h~~~V~~l~~~-~~~~l~sgs~d 943 (1178)
.......+.+|...|.++ +++ |++|++|+.||.|++||+.+ ++.+ ..+.+|...|++++|+ +++.+++|+.|
T Consensus 28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 107 (368)
T 3mmy_A 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCD 107 (368)
T ss_dssp TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCC
Confidence 455667889999999965 787 59999999999999999997 5555 7788999999999999 78899999999
Q ss_pred CeEEEEeCCCCeEEEEecCCCCCEEEEEE--eCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEcCCEEEE
Q 001042 944 GTVKMWDVRTDTCVATVGRCSSAVLCMEY--DDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVIT 1021 (1178)
Q Consensus 944 g~V~iwd~~~~~~~~~~~~~~~~I~~l~~--sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~~l~s 1021 (1178)
|.|++||+.+++.+.. ..|...|.+++| +++++++++++.||.|++||+++++.+..+..+. .+.++.+.+..+++
T Consensus 108 g~v~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 185 (368)
T 3mmy_A 108 KTAKMWDLSSNQAIQI-AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIYPMAVV 185 (368)
T ss_dssp SEEEEEETTTTEEEEE-EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEETTEEEE
T ss_pred CcEEEEEcCCCCceee-ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecCCeeEE
Confidence 9999999999987764 478999999999 8999999999999999999999999998887664 67888888899999
Q ss_pred EeCCCcEEEEEcCCCeeeeEec--cCCCcEEEEEEecCCCE----EEEEeCCCcEEEEECCCCce-EEEEEecccCC---
Q 001042 1022 GSDDWTARMWSISRGTCDAVLA--CHAGPVQCVEYSSSDRG----IITGSSDGLLRFWENDDGGI-KCVKNVTIHSS--- 1091 (1178)
Q Consensus 1022 gs~dg~I~iwd~~~~~~~~~~~--~h~~~I~~l~~spdg~~----L~sgs~Dg~I~iwd~~~~~~-~~~~~~~~h~~--- 1091 (1178)
++.++.+++||++......... .+...+.++++.+++.. +++|+.||.|++||++.... .....+.+|..
T Consensus 186 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~ 265 (368)
T 3mmy_A 186 ATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGT 265 (368)
T ss_dssp EEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC--
T ss_pred EeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccc
Confidence 9999999999998765433322 24456677777666655 99999999999999988743 34455556654
Q ss_pred ---------cEEEE--ecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEE
Q 001042 1092 ---------AILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRI 1160 (1178)
Q Consensus 1092 ---------~i~~i--s~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~L 1160 (1178)
.|.++ +|++++|++|+.||.|++||+.++ +++..+.+|...|++++|+|||++|
T Consensus 266 ~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~---------------~~~~~~~~~~~~v~~~~~s~~g~~l 330 (368)
T 3mmy_A 266 NTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR---------------TKLKTSEQLDQPISACCFNHNGNIF 330 (368)
T ss_dssp --CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT---------------EEEEECCCCSSCEEEEEECTTSSCE
T ss_pred cccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC---------------cEEEEecCCCCCceEEEECCCCCeE
Confidence 56555 799999999999999999999743 6677788999999999999999999
Q ss_pred EEEeCCCcEEEEEC
Q 001042 1161 CSGGRNGLLRLWEA 1174 (1178)
Q Consensus 1161 as~s~Dg~V~IWdv 1174 (1178)
++|+.|+..+.|++
T Consensus 331 ~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 331 AYASSYDWSKGHEF 344 (368)
T ss_dssp EEEECCCSTTCGGG
T ss_pred EEEecccccccccc
Confidence 99999986555543
No 103
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=9.7e-29 Score=286.12 Aligned_cols=282 Identities=19% Similarity=0.275 Sum_probs=235.7
Q ss_pred ceEEecccccceEEEEeeeccceeccccccCC---CCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEE--EecCC
Q 001042 819 NIRIIRGHAGAITALHCVTKREVWDLVGDRED---AGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDR 893 (1178)
Q Consensus 819 ~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d---~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~--~s~d~ 893 (1178)
.++.+.+|.+.|++++|+ |+ |++|++|+.||.|++||+...+......+.+|...|.+ +++++
T Consensus 31 ~~~~~~~h~~~v~~~~~~------------~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 98 (368)
T 3mmy_A 31 DIEVTSSPDDSIGCLSFS------------PPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDG 98 (368)
T ss_dssp CEECSSCCSSCEEEEEEC------------CTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTS
T ss_pred eeEeccCCCCceEEEEEc------------CCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCC
Confidence 677899999999999998 66 69999999999999999874455555888999999985 58999
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEE--e-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEE
Q 001042 894 GKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRM--L-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCM 970 (1178)
Q Consensus 894 ~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~--~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l 970 (1178)
++|++++.||.|++||+.+++.+. +..|...|.+++| + ++..+++++.||.|++||+++++.+..+..+. .+.++
T Consensus 99 ~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~ 176 (368)
T 3mmy_A 99 SKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCA 176 (368)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEE
T ss_pred CEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEE
Confidence 999999999999999999988766 5669999999999 5 56789999999999999999999888886554 56666
Q ss_pred EEeCCCCEEEEEeCCCeEEEEECCCCceEEEEe--cCCccEEEE--EEcCC----EEEEEeCCCcEEEEEcCCC---eee
Q 001042 971 EYDDSTGILAAGGRDAVANIWDIRAGRQMHKFL--GHTKWIRSI--RMDRD----TVITGSDDWTARMWSISRG---TCD 1039 (1178)
Q Consensus 971 ~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~--~~~~~v~~l--~~~~~----~l~sgs~dg~I~iwd~~~~---~~~ 1039 (1178)
.+.+ ..+++++.++.+.+||++......... .+...+.++ ..++. .+++++.||.|++||++.. ...
T Consensus 177 ~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~ 254 (368)
T 3mmy_A 177 DVIY--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDN 254 (368)
T ss_dssp EEET--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHS
T ss_pred EecC--CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccc
Confidence 6654 578899999999999998765543322 222334444 44443 4999999999999999987 567
Q ss_pred eEeccCCC------------cEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE--ecCCCEEEE
Q 001042 1040 AVLACHAG------------PVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI--NAGDHWLGI 1105 (1178)
Q Consensus 1040 ~~~~~h~~------------~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~dg~~Las 1105 (1178)
..+.+|.. .|++++|+|++++|++|+.||.|++||+.++ .++..+.+|...|.++ +|+|++|++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~g~~l~~ 332 (368)
T 3mmy_A 255 FTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR--TKLKTSEQLDQPISACCFNHNGNIFAY 332 (368)
T ss_dssp EEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT--EEEEECCCCSSCEEEEEECTTSSCEEE
T ss_pred eeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC--cEEEEecCCCCCceEEEECCCCCeEEE
Confidence 77777776 7999999999999999999999999999998 7788888999998766 799999999
Q ss_pred EeCCCcEEEEEcC
Q 001042 1106 GAADNSMSLFHRP 1118 (1178)
Q Consensus 1106 gs~Dg~I~iwd~~ 1118 (1178)
|+.|+..+.|++.
T Consensus 333 ~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 333 ASSYDWSKGHEFY 345 (368)
T ss_dssp EECCCSTTCGGGC
T ss_pred Eeccccccccccc
Confidence 9999866665543
No 104
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=2.5e-29 Score=287.06 Aligned_cols=247 Identities=18% Similarity=0.304 Sum_probs=204.7
Q ss_pred EecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCe--EEEEecCCCCCEEEEEEeC--CCCEEEEEeCCCeEEEEE
Q 001042 918 ELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDT--CVATVGRCSSAVLCMEYDD--STGILAAGGRDAVANIWD 992 (1178)
Q Consensus 918 ~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~--~~~~~~~~~~~I~~l~~sp--~~~~l~sgs~dg~I~lwD 992 (1178)
.+.+|.+.|++++|+ ++++|++|+.|++|++||+.++. .+..+.+|...|.+++|++ ++++|++|+.|+.|++||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 456899999999999 78999999999999999998875 4677889999999999986 489999999999999999
Q ss_pred CCCCc--eEEEEecCCccEEEEEEcC----CEEEEEeCCCcEEEEEcCCCee---eeEeccCCCcEEEEEEecC------
Q 001042 993 IRAGR--QMHKFLGHTKWIRSIRMDR----DTVITGSDDWTARMWSISRGTC---DAVLACHAGPVQCVEYSSS------ 1057 (1178)
Q Consensus 993 ~~~~~--~~~~~~~~~~~v~~l~~~~----~~l~sgs~dg~I~iwd~~~~~~---~~~~~~h~~~I~~l~~spd------ 1057 (1178)
+++++ ....+.+|...|.+++|++ .++++|+.||.|++||++.+.. ...+.+|...|.+++|+|+
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence 99874 5677889999999999964 4899999999999999987632 4556789999999999997
Q ss_pred -----------CCEEEEEeCCCcEEEEECCCC-ceEEEEEecccCCcEEEE--ecCC----CEEEEEeCCCcEEEEEcCC
Q 001042 1058 -----------DRGIITGSSDGLLRFWENDDG-GIKCVKNVTIHSSAILSI--NAGD----HWLGIGAADNSMSLFHRPQ 1119 (1178)
Q Consensus 1058 -----------g~~L~sgs~Dg~I~iwd~~~~-~~~~~~~~~~h~~~i~~i--s~dg----~~Lasgs~Dg~I~iwd~~~ 1119 (1178)
+++|++|+.|++|++||+.++ .......+.+|...|.++ +|++ .+||+|+.|++|++|++..
T Consensus 168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 478999999999999999754 335677888999999887 5765 8999999999999999874
Q ss_pred CccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001042 1120 ERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEAT 1175 (1178)
Q Consensus 1120 ~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~ 1175 (1178)
.. .+. + ....+.+|...|.+++|+|+|++||+|+.||+|++|+..
T Consensus 248 ~~------~~~----~-~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 248 AS------SNT----W-SPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp TT------CCC----C-BCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred cc------ccc----h-hhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 21 010 0 111234678899999999999999999999999999975
No 105
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.3e-28 Score=282.20 Aligned_cols=254 Identities=18% Similarity=0.293 Sum_probs=217.1
Q ss_pred CcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCC--CCeEEEEecCCCCCEEEEEEeCC--CCEEEEEeCCCe
Q 001042 913 SQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVR--TDTCVATVGRCSSAVLCMEYDDS--TGILAAGGRDAV 987 (1178)
Q Consensus 913 ~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~--~~~~~~~~~~~~~~I~~l~~sp~--~~~l~sgs~dg~ 987 (1178)
|+++..+.+|...|++++|+ ++.++++|+.||.|++||+. +++.+..+..|...|.+++|+++ ++++++|+.||.
T Consensus 1 G~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 80 (379)
T ss_dssp ----CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred CCccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence 34566788999999999999 78899999999999999998 56777888899999999999987 999999999999
Q ss_pred EEEEECCCCc--eEEEEecCCccEEEEEEc----CCEEEEEeCCCcEEEEEcCCCe--eeeEeccCCCcEEEEEEec---
Q 001042 988 ANIWDIRAGR--QMHKFLGHTKWIRSIRMD----RDTVITGSDDWTARMWSISRGT--CDAVLACHAGPVQCVEYSS--- 1056 (1178)
Q Consensus 988 I~lwD~~~~~--~~~~~~~~~~~v~~l~~~----~~~l~sgs~dg~I~iwd~~~~~--~~~~~~~h~~~I~~l~~sp--- 1056 (1178)
|++||+.+++ .+..+..|...|.+++|+ ++.+++++.||.|++||++++. ....+..|...|++++|+|
T Consensus 81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 160 (379)
T 3jrp_A 81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI 160 (379)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-
T ss_pred EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccc
Confidence 9999999987 677788899999999995 5689999999999999998873 3446678999999999999
Q ss_pred ----------CCCEEEEEeCCCcEEEEECCCCc--eEEEEEecccCCcEEEE--ecC---CCEEEEEeCCCcEEEEEcCC
Q 001042 1057 ----------SDRGIITGSSDGLLRFWENDDGG--IKCVKNVTIHSSAILSI--NAG---DHWLGIGAADNSMSLFHRPQ 1119 (1178)
Q Consensus 1057 ----------dg~~L~sgs~Dg~I~iwd~~~~~--~~~~~~~~~h~~~i~~i--s~d---g~~Lasgs~Dg~I~iwd~~~ 1119 (1178)
++.++++|+.||.|++||+.++. ......+.+|...|.++ +|+ +.++++|+.||.|++||+..
T Consensus 161 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~ 240 (379)
T 3jrp_A 161 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 240 (379)
T ss_dssp ---------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred cccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence 69999999999999999998764 34566788899998776 788 89999999999999999974
Q ss_pred CccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001042 1120 ERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATI 1176 (1178)
Q Consensus 1120 ~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~t 1176 (1178)
+. ... .........|...|++++|+|+|++|++++.||.|++|++.+
T Consensus 241 ~~---------~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 241 EQ---------GPW-KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp TT---------SCC-EEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred CC---------ccc-eeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 31 100 022333456888999999999999999999999999999874
No 106
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.96 E-value=2.3e-28 Score=292.23 Aligned_cols=279 Identities=12% Similarity=0.263 Sum_probs=224.7
Q ss_pred ccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCC---------ceeeEeecccc------------
Q 001042 825 GHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRG---------SELRATLKGHT------------ 883 (1178)
Q Consensus 825 gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~---------~~~~~~l~~h~------------ 883 (1178)
.|.+.|++++|+ |+|++||+|+.||.|+|||+.... ......+.+|.
T Consensus 26 ~~~~~V~~v~~s------------~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 93 (447)
T 3dw8_B 26 AEADIISTVEFN------------HSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIE 93 (447)
T ss_dssp CGGGSEEEEEEC------------SSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEEC
T ss_pred cccCcEEEEEEC------------CCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccccccccccccccccccc
Confidence 478999999998 899999999999999999977322 12467888998
Q ss_pred cceEE--EecCC--CEEEEEeCCCcEEEEECCCCcEE---------------------------------------EE-e
Q 001042 884 RTVRA--INSDR--GKVVSGSDDQSVLVWDKQTSQLL---------------------------------------EE-L 919 (1178)
Q Consensus 884 ~~V~~--~s~d~--~~l~sgs~dg~I~iwd~~t~~~~---------------------------------------~~-l 919 (1178)
..|.+ +++++ ..+++++.||+|++||+.+++.. .. .
T Consensus 94 ~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (447)
T 3dw8_B 94 EKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA 173 (447)
T ss_dssp CCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred CceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence 66774 57887 79999999999999998765432 12 3
Q ss_pred cCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCC-CeEEEE-------ecCCCCCEEEEEEeCCC-CEEEEEeCCCeEE
Q 001042 920 KGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRT-DTCVAT-------VGRCSSAVLCMEYDDST-GILAAGGRDAVAN 989 (1178)
Q Consensus 920 ~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~-~~~~~~-------~~~~~~~I~~l~~sp~~-~~l~sgs~dg~I~ 989 (1178)
.+|...|.+++|+ ++..+++| .||+|++||+++ ++.... +..|...|.+++|+|++ +++++|+.||.|+
T Consensus 174 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~ 252 (447)
T 3dw8_B 174 NAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIR 252 (447)
T ss_dssp SCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEE
T ss_pred cCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEE
Confidence 6899999999999 67788888 899999999984 444442 45788999999999998 9999999999999
Q ss_pred EEECCCCce----EEEEecCCc------------cEEEEEEcC--CEEEEEeCCCcEEEEEcCC-CeeeeEeccCCCc--
Q 001042 990 IWDIRAGRQ----MHKFLGHTK------------WIRSIRMDR--DTVITGSDDWTARMWSISR-GTCDAVLACHAGP-- 1048 (1178)
Q Consensus 990 lwD~~~~~~----~~~~~~~~~------------~v~~l~~~~--~~l~sgs~dg~I~iwd~~~-~~~~~~~~~h~~~-- 1048 (1178)
+||+++++. +..+..|.. .|.+++|++ .++++++. |.|++||+++ ++++..+.+|...
T Consensus 253 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~ 331 (447)
T 3dw8_B 253 LCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRS 331 (447)
T ss_dssp EEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTT
T ss_pred EEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccc
Confidence 999999887 788888876 899999954 58999988 9999999997 8888888888642
Q ss_pred -------------EEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEec----------------------------
Q 001042 1049 -------------VQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVT---------------------------- 1087 (1178)
Q Consensus 1049 -------------I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~---------------------------- 1087 (1178)
+..++|+|++++|++|+.||.|++||+.+++...+....
T Consensus 332 ~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (447)
T 3dw8_B 332 KLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVD 411 (447)
T ss_dssp THHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGG
T ss_pred cccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCccccccccc
Confidence 334999999999999999999999999988533221110
Q ss_pred --ccCCcE--EEEecCCCEEEEEeCCCcEEEEEcC
Q 001042 1088 --IHSSAI--LSINAGDHWLGIGAADNSMSLFHRP 1118 (1178)
Q Consensus 1088 --~h~~~i--~~is~dg~~Lasgs~Dg~I~iwd~~ 1118 (1178)
.+...| .+++|++++||+++.++ +++|...
T Consensus 412 ~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 412 SLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp GCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred ccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 112233 55689999999998775 8888753
No 107
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.96 E-value=5.1e-28 Score=285.75 Aligned_cols=281 Identities=18% Similarity=0.244 Sum_probs=232.4
Q ss_pred EEEEecCCCCccc-ccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceecccccc
Q 001042 772 VQSMFSREASSRS-HSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDR 848 (1178)
Q Consensus 772 ~~~aFSpdg~~la-s~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s 848 (1178)
..++++|+...++ +++.+ |+||+++..... ...+..+.+|.+.|++++|+
T Consensus 38 ~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~---------------~~~~~~~~~h~~~V~~~~~~------------ 90 (402)
T 2aq5_A 38 GFCAVNPKFMALICEASGGGAFLVLPLGKTGRV---------------DKNVPLVCGHTAPVLDIAWC------------ 90 (402)
T ss_dssp CSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC---------------CTTCCCBCCCSSCEEEEEEC------------
T ss_pred CcEEECCCeEEEEEEEcCCCEEEEEECccCCCC---------------CCCCceEecCCCCEEEEEeC------------
Confidence 3478999986544 45555 999998754311 11456788999999999998
Q ss_pred C-CCCEEEEEeCCCcEEEEcCCCCCc-----eeeEeecccccceEE--EecCC-CEEEEEeCCCcEEEEECCCCcEEEEe
Q 001042 849 E-DAGFFISGSTDCLVKIWDPSLRGS-----ELRATLKGHTRTVRA--INSDR-GKVVSGSDDQSVLVWDKQTSQLLEEL 919 (1178)
Q Consensus 849 ~-d~~~Lasgs~Dg~I~iWd~~~~~~-----~~~~~l~~h~~~V~~--~s~d~-~~l~sgs~dg~I~iwd~~t~~~~~~l 919 (1178)
| ++++|++|+.||+|++||+...+. .....+.+|...|.+ +++++ +.+++|+.||.|++||+.+++.+..+
T Consensus 91 p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 170 (402)
T 2aq5_A 91 PHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTL 170 (402)
T ss_dssp TTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred CCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEE
Confidence 6 899999999999999999874322 456788899999986 57887 69999999999999999999999999
Q ss_pred --cCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEe-cCCCCC-EEEEEEeCCCCEEEEE---eCCCeEEEE
Q 001042 920 --KGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATV-GRCSSA-VLCMEYDDSTGILAAG---GRDAVANIW 991 (1178)
Q Consensus 920 --~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~-~~~~~~-I~~l~~sp~~~~l~sg---s~dg~I~lw 991 (1178)
.+|...|.+++|+ ++..+++++.||.|++||+++++.+..+ ..|... +.+++|+|+++++++| +.|+.|++|
T Consensus 171 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iw 250 (402)
T 2aq5_A 171 GPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALW 250 (402)
T ss_dssp CTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEE
T ss_pred ecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEE
Confidence 8899999999999 7889999999999999999999999888 677665 8999999999999999 789999999
Q ss_pred ECCCCce-EEEEe-cCCccEEEEEEcC--CEEE-EEeCCCcEEEEEcCCCee-eeEecc--CCCcEEEEEEecCCCEEEE
Q 001042 992 DIRAGRQ-MHKFL-GHTKWIRSIRMDR--DTVI-TGSDDWTARMWSISRGTC-DAVLAC--HAGPVQCVEYSSSDRGIIT 1063 (1178)
Q Consensus 992 D~~~~~~-~~~~~-~~~~~v~~l~~~~--~~l~-sgs~dg~I~iwd~~~~~~-~~~~~~--h~~~I~~l~~spdg~~L~s 1063 (1178)
|+++++. +.... .+...+.+++|++ +.++ +|+.||.|++||+.+++. +..+.. |...|.+++|+|++.++++
T Consensus 251 d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s 330 (402)
T 2aq5_A 251 DTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN 330 (402)
T ss_dssp ETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG
T ss_pred cCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee
Confidence 9998765 33332 5677899999965 4665 566899999999998874 444444 4589999999999998775
Q ss_pred EeCCCcEEEEECCCCceE
Q 001042 1064 GSSDGLLRFWENDDGGIK 1081 (1178)
Q Consensus 1064 gs~Dg~I~iwd~~~~~~~ 1081 (1178)
.++.+++|++.++...
T Consensus 331 --~~~~~~~~~l~~~~~~ 346 (402)
T 2aq5_A 331 --KCEIARFYKLHERKCE 346 (402)
T ss_dssp --GTEEEEEEEEETTEEE
T ss_pred --cceeEEEEEcCCCcEE
Confidence 5779999999987443
No 108
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=1.3e-27 Score=277.60 Aligned_cols=278 Identities=13% Similarity=0.108 Sum_probs=214.2
Q ss_pred ceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEEecCCCEE-E
Q 001042 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKV-V 897 (1178)
Q Consensus 819 ~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l-~ 897 (1178)
.+..+.+|.+.|++++|+ |||++||+|+.|| +++||++ ..........+...+.++.++++.+ +
T Consensus 11 ~~~~~~~h~~~V~~v~fs------------~dg~~la~g~~~~-~~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (355)
T 3vu4_A 11 PIVPENHVSNPVTDYEFN------------QDQSCLILSTLKS-FEIYNVH--PVAHIMSQEMRHLSKVRMLHRTNYVAF 75 (355)
T ss_dssp --------CCCCCEEEEC------------TTSSEEEEECSSE-EEEEEET--TEEEEEEEECSCCCEEEECTTSSEEEE
T ss_pred CccccccCCCceEEEEEC------------CCCCEEEEEcCCE-EEEEecC--CcceeeeeecCCeEEEEEcCCCCEEEE
Confidence 566778999999999998 8999999999776 7899976 3333333333345566778888877 5
Q ss_pred EEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEeCCCeEEEEeCCCeEEEEeCCCC-eEEEEecCCCCCEEEEEEeCCC
Q 001042 898 SGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTD-TCVATVGRCSSAVLCMEYDDST 976 (1178)
Q Consensus 898 sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~-~~~~~~~~~~~~I~~l~~sp~~ 976 (1178)
+++.|++|++||..+++.+..+. +...|.++.++++. ++++ .|+.|++||+.++ +.+..+.. ....+++++
T Consensus 76 ~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~-~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~-- 147 (355)
T 3vu4_A 76 VTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF-IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN-- 147 (355)
T ss_dssp ECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE-EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--
T ss_pred EECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE-EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--
Confidence 67788999999999999998887 67799999997554 3333 4889999999988 55544433 444566777
Q ss_pred CEEEE--EeCCCeEEEEECCCCc----------------eEEEEecCCccEEEEEEc--CCEEEEEeCCCc-EEEEEcCC
Q 001042 977 GILAA--GGRDAVANIWDIRAGR----------------QMHKFLGHTKWIRSIRMD--RDTVITGSDDWT-ARMWSISR 1035 (1178)
Q Consensus 977 ~~l~s--gs~dg~I~lwD~~~~~----------------~~~~~~~~~~~v~~l~~~--~~~l~sgs~dg~-I~iwd~~~ 1035 (1178)
..+++ |+.||.|++||+++++ .+..+.+|.+.|.+++|+ ++++++|+.||+ |++||+++
T Consensus 148 ~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~ 227 (355)
T 3vu4_A 148 GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTED 227 (355)
T ss_dssp TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTT
T ss_pred cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence 56666 5789999999999875 267889999999999995 459999999998 99999999
Q ss_pred CeeeeEec-c-CCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEE--------------------ecc---cC
Q 001042 1036 GTCDAVLA-C-HAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKN--------------------VTI---HS 1090 (1178)
Q Consensus 1036 ~~~~~~~~-~-h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~--------------------~~~---h~ 1090 (1178)
++++..+. + |.+.|++++|+|+|++|++|+.|++|++||+..+....... +.. ..
T Consensus 228 ~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (355)
T 3vu4_A 228 GVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVR 307 (355)
T ss_dssp CCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCC
T ss_pred CcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCC
Confidence 99999998 5 99999999999999999999999999999997653211111 111 11
Q ss_pred CcEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 001042 1091 SAILSINAGDHWLGIGAADNSMSLFHRPQ 1119 (1178)
Q Consensus 1091 ~~i~~is~dg~~Lasgs~Dg~I~iwd~~~ 1119 (1178)
..+.+++++|+.+++++.||.+++|++..
T Consensus 308 ~~~~a~~~d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 308 GCKIAWISESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp CCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred ceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence 25677899999999999999999999863
No 109
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=8.1e-29 Score=316.82 Aligned_cols=247 Identities=20% Similarity=0.296 Sum_probs=213.8
Q ss_pred eEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEE--ecC--CCE
Q 001042 820 IRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSD--RGK 895 (1178)
Q Consensus 820 ~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~--s~d--~~~ 895 (1178)
+.++.||.++|++++|+ +++++|++|+.||+|++||+..........+.+|...|.++ +++ +++
T Consensus 2 ~~~l~gH~~~V~~l~~s------------~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~ 69 (753)
T 3jro_A 2 VVIANAHNELIHDAVLD------------YYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTI 69 (753)
T ss_dssp ------CCCCEEEECCC------------SSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSE
T ss_pred eeecccCcceeEEEEEC------------CCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCE
Confidence 45788999999999998 89999999999999999998644567778899999999865 566 899
Q ss_pred EEEEeCCCcEEEEECCCCc--EEEEecCCCCceEEEEEe-C--CCeEEEEeCCCeEEEEeCCCCe--EEEEecCCCCCEE
Q 001042 896 VVSGSDDQSVLVWDKQTSQ--LLEELKGHDAQVSCVRML-S--GERVLTASHDGTVKMWDVRTDT--CVATVGRCSSAVL 968 (1178)
Q Consensus 896 l~sgs~dg~I~iwd~~t~~--~~~~l~~h~~~V~~l~~~-~--~~~l~sgs~dg~V~iwd~~~~~--~~~~~~~~~~~I~ 968 (1178)
+++|+.||.|++||+.+++ .+..+.+|...|++++|+ + +..+++|+.||+|++||++++. ....+..|...|.
T Consensus 70 l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~ 149 (753)
T 3jro_A 70 LASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVN 149 (753)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEE
T ss_pred EEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceE
Confidence 9999999999999999987 677888999999999999 4 7899999999999999998873 3445668899999
Q ss_pred EEEEeC-------------CCCEEEEEeCCCeEEEEECCCC----ceEEEEecCCccEEEEEEc-----CCEEEEEeCCC
Q 001042 969 CMEYDD-------------STGILAAGGRDAVANIWDIRAG----RQMHKFLGHTKWIRSIRMD-----RDTVITGSDDW 1026 (1178)
Q Consensus 969 ~l~~sp-------------~~~~l~sgs~dg~I~lwD~~~~----~~~~~~~~~~~~v~~l~~~-----~~~l~sgs~dg 1026 (1178)
+++|+| ++..+++|+.||.|++||++++ .....+.+|...|.+++|+ ++.+++|+.||
T Consensus 150 ~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg 229 (753)
T 3jro_A 150 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR 229 (753)
T ss_dssp EEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSS
T ss_pred EEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCC
Confidence 999999 5899999999999999999887 4566778899999999995 45899999999
Q ss_pred cEEEEEcCCCe-----eeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 001042 1027 TARMWSISRGT-----CDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDG 1078 (1178)
Q Consensus 1027 ~I~iwd~~~~~-----~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~ 1078 (1178)
.|++||+.+++ .......|.+.|++++|+|+|+++++|+.||.|++|++.++
T Consensus 230 ~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 230 TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp CEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred EEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 99999998864 33334468899999999999999999999999999999864
No 110
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=8e-29 Score=293.61 Aligned_cols=293 Identities=8% Similarity=0.029 Sum_probs=226.8
Q ss_pred cc-cCCCCC-C---CCC----CCCCCcccccCCcceEEEEecCCCCcccccccceeecccccccCCCCCCCCCCCcCCcc
Q 001042 745 GM-PSPLSK-D---ATN----DDQQPAEASGIGRSWVQSMFSREASSRSHSFSRVRKWTSDAANENGTPRKQDSTAGGKK 815 (1178)
Q Consensus 745 ~~-fSP~g~-~---~~~----~~~~~~~~~gh~~~i~~~aFSpdg~~las~~~dI~vWd~~~~~~~~~~~~~~~~~~~~~ 815 (1178)
++ |||||+ . +.+ +........||...+.+++||||| .++.|++.+++.
T Consensus 20 sv~~SpDG~~iASas~D~TV~d~~~~~~l~gh~~~v~~V~FsPdg--------~~~~~~~~~~~~--------------- 76 (588)
T 2j04_A 20 NLTWARDGTLYLTTFPDISIGQPKYAKDINCNSKNLFHVKEFPLE--------FENKLDFELAQQ--------------- 76 (588)
T ss_dssp CEEECTTSCEEEECSSSEEEEEECCCSCCSSBGGGTEEEEEECCC--------CCCTTTTSCCCS---------------
T ss_pred EEEECCCCCEEEEEcCCceeecccccceecCCCccEEEEEECCCC--------CcceEEEEeCCC---------------
Confidence 77 999998 1 111 111222336999999999999999 334444443331
Q ss_pred cccceEEec-ccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeeccccc-----ceE--
Q 001042 816 IQSNIRIIR-GHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTR-----TVR-- 887 (1178)
Q Consensus 816 ~~~~~~~l~-gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~-----~V~-- 887 (1178)
...+. +|...|++++|| |||++||+++.||+|++||.+ + +...+. |.. .+.
T Consensus 77 ----~~~~~~~~~~~V~~vawS------------PdG~~LAs~s~dg~V~iwd~~--~--~l~~l~-~~~~~~~~sv~sv 135 (588)
T 2j04_A 77 ----NGLLNSQPVCYPRVCKPS------------PIDDWMAVLSNNGNVSVFKDN--K--MLTNLD-SKGNLSSRTYHCF 135 (588)
T ss_dssp ----SCSSTTSCSCCEEEEEEC------------SSSSCEEEEETTSCEEEEETT--E--EEEECC-CSSCSTTTCEEEE
T ss_pred ----ceEeecCCCCcEEEEEEC------------CCCCEEEEEeCCCcEEEEeCC--c--eeeecc-CCCccccccEEEE
Confidence 11222 568899999998 899999999999999999954 2 555566 654 366
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCc-------EEEEe----cCCCCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeE
Q 001042 888 AINSDRGKVVSGSDDQSVLVWDKQTSQ-------LLEEL----KGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTC 956 (1178)
Q Consensus 888 ~~s~d~~~l~sgs~dg~I~iwd~~t~~-------~~~~l----~~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~ 956 (1178)
+|||||++|++|+.||+|++||+.++. .+.++ .+|...|.+++|+++. +++++.|++|++||+.+++.
T Consensus 136 afSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~ 214 (588)
T 2j04_A 136 EWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSH 214 (588)
T ss_dssp EECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSS
T ss_pred EEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCcc
Confidence 568999999999999999999999885 35676 6788999999999766 99999999999999988773
Q ss_pred ---EEEe-cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEE--cCC--EEEEEeCCCcE
Q 001042 957 ---VATV-GRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM--DRD--TVITGSDDWTA 1028 (1178)
Q Consensus 957 ---~~~~-~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~--~~~--~l~sgs~dg~I 1028 (1178)
.+++ .+|...|.+++|+ |+.+++++ +|.|++||+.+++......+|...+..+++ +++ .+++++.||+
T Consensus 215 ~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~- 290 (588)
T 2j04_A 215 QPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY- 290 (588)
T ss_dssp CCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-
T ss_pred ccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-
Confidence 3556 4778899999999 68888887 699999999988874444489999999999 766 7999999999
Q ss_pred EEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEE--EEecCCCEEEEE
Q 001042 1029 RMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAIL--SINAGDHWLGIG 1106 (1178)
Q Consensus 1029 ~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~--~is~dg~~Lasg 1106 (1178)
++|... .++++|++..+++. |+++++|+...+. ...+.+ ...|. ++||||+.+|++
T Consensus 291 klw~~d----------------~~~~spd~~l~a~~--d~~v~lW~~~g~~---l~~~~~-~~~I~~va~SPdG~~lA~~ 348 (588)
T 2j04_A 291 KVLLED----------------ELHVTADNIIAPYL--EKKFKKWSTIWNE---FNNYET-TLVIHGISLSPDGYSIAIV 348 (588)
T ss_dssp EEEESS----------------SEEEECCCSSHHHH--HHHHHHTTTTTTS---SSSSCC-EEEEEEEEECTTSSEEEEE
T ss_pred EEEeec----------------cEEECCCceEEEEc--CCEEEEEECCCCc---eeeecc-ceEEEEEEECCCCCEEEEE
Confidence 999976 26699999877764 9999999886553 113332 44454 448999999998
Q ss_pred eC
Q 001042 1107 AA 1108 (1178)
Q Consensus 1107 s~ 1108 (1178)
+.
T Consensus 349 ~~ 350 (588)
T 2j04_A 349 YD 350 (588)
T ss_dssp EE
T ss_pred Ee
Confidence 63
No 111
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.96 E-value=4.8e-28 Score=286.02 Aligned_cols=277 Identities=18% Similarity=0.225 Sum_probs=226.4
Q ss_pred EEEecCCCEE-EEEeCCCcEEEEECCCCc----EEEEecCCCCceEEEEEe--CCCeEEEEeCCCeEEEEeCCCC-----
Q 001042 887 RAINSDRGKV-VSGSDDQSVLVWDKQTSQ----LLEELKGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTD----- 954 (1178)
Q Consensus 887 ~~~s~d~~~l-~sgs~dg~I~iwd~~t~~----~~~~l~~h~~~V~~l~~~--~~~~l~sgs~dg~V~iwd~~~~----- 954 (1178)
.+++++...+ ++++.||.|++|++.+.. .+..+.+|.+.|++++|+ ++..+++|+.||+|++||+.++
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~ 119 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLP 119 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSC
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccc
Confidence 3455655443 357889999999996642 344677899999999998 4789999999999999999987
Q ss_pred --eEEEEecCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCceEEEE--ecCCccEEEEEEc--CCEEEEEeCCCc
Q 001042 955 --TCVATVGRCSSAVLCMEYDDST-GILAAGGRDAVANIWDIRAGRQMHKF--LGHTKWIRSIRMD--RDTVITGSDDWT 1027 (1178)
Q Consensus 955 --~~~~~~~~~~~~I~~l~~sp~~-~~l~sgs~dg~I~lwD~~~~~~~~~~--~~~~~~v~~l~~~--~~~l~sgs~dg~ 1027 (1178)
+.+..+.+|...|.+++|+|++ +++++|+.||.|++||+++++.+..+ ..|...|.+++|+ ++.+++++.||.
T Consensus 120 ~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 199 (402)
T 2aq5_A 120 LREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKR 199 (402)
T ss_dssp BCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSE
T ss_pred cCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCc
Confidence 5677888999999999999998 69999999999999999999999999 7899999999995 559999999999
Q ss_pred EEEEEcCCCeeeeEe-ccCCCc-EEEEEEecCCCEEEEE---eCCCcEEEEECCCCceEEEEEecccCCcEEE--EecCC
Q 001042 1028 ARMWSISRGTCDAVL-ACHAGP-VQCVEYSSSDRGIITG---SSDGLLRFWENDDGGIKCVKNVTIHSSAILS--INAGD 1100 (1178)
Q Consensus 1028 I~iwd~~~~~~~~~~-~~h~~~-I~~l~~spdg~~L~sg---s~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~--is~dg 1100 (1178)
|++||+++++.+..+ .+|.+. +.+++|+|+++++++| +.|+.|++||+.+++.........|...+.+ ++|++
T Consensus 200 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 279 (402)
T 2aq5_A 200 VRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDT 279 (402)
T ss_dssp EEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTT
T ss_pred EEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCC
Confidence 999999999999988 688776 8999999999999999 7999999999998753222222245555554 48999
Q ss_pred CEEEE-EeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001042 1101 HWLGI-GAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATIN 1177 (1178)
Q Consensus 1101 ~~Las-gs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~tg 1177 (1178)
+++++ |+.||.|++||+.+++ .. ...+.... |...|++++|+|++.++++ .|+.+++|++.++
T Consensus 280 ~~l~~~g~~dg~i~i~d~~~~~---------~~--~~~l~~~~-~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~ 343 (402)
T 2aq5_A 280 NIVYLCGKGDSSIRYFEITSEA---------PF--LHYLSMFS-SKESQRGMGYMPKRGLEVN--KCEIARFYKLHER 343 (402)
T ss_dssp TEEEEEETTCSCEEEEEECSST---------TC--EEEEEEEC-CSSCCSEEEECCGGGSCGG--GTEEEEEEEEETT
T ss_pred CEEEEEEcCCCeEEEEEecCCC---------cc--eEeecccc-cCCcccceEEeccccccee--cceeEEEEEcCCC
Confidence 99865 5579999999998432 10 02222222 6688999999999998875 5779999998775
No 112
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=3.6e-27 Score=273.79 Aligned_cols=292 Identities=12% Similarity=0.162 Sum_probs=213.8
Q ss_pred ceeeEeecccccceEE--EecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeE-EEEeCCCeEEE
Q 001042 873 SELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERV-LTASHDGTVKM 948 (1178)
Q Consensus 873 ~~~~~~l~~h~~~V~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l-~sgs~dg~V~i 948 (1178)
........+|...|.+ |++||+++++|+.+| +++||+.+++.......+ .+..+++. +++.+ ++++.|++|++
T Consensus 9 ~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~v~i 85 (355)
T 3vu4_A 9 RNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLHRTNYVAFVTGVKEVVHI 85 (355)
T ss_dssp ----------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECTTSSEEEEECSSTTEEEE
T ss_pred cCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcCCCCEEEEEECCccEEEE
Confidence 3444566888888885 589999999998775 789999988776554433 46667776 45555 67788899999
Q ss_pred EeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-ceEEEEecCCccEEEEEEcCCEEEE--EeCC
Q 001042 949 WDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAG-RQMHKFLGHTKWIRSIRMDRDTVIT--GSDD 1025 (1178)
Q Consensus 949 wd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~-~~~~~~~~~~~~v~~l~~~~~~l~s--gs~d 1025 (1178)
||..+++.+..+. +...|.+++++++. ++++ .++.|++||+.++ +.+..+.. ....+++.+..+++ |+.|
T Consensus 86 Wd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~~~la~~sg~~~ 158 (355)
T 3vu4_A 86 WDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSNGLLVYSNEFNL 158 (355)
T ss_dssp EETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEETTEEEEEESSCT
T ss_pred EECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEccEEEEeCCCcC
Confidence 9999999998885 56789999998764 4443 4789999999988 66665554 33334455577776 5799
Q ss_pred CcEEEEEcCCCe----------------eeeEeccCCCcEEEEEEecCCCEEEEEeCCCc-EEEEECCCCceEEEEEec-
Q 001042 1026 WTARMWSISRGT----------------CDAVLACHAGPVQCVEYSSSDRGIITGSSDGL-LRFWENDDGGIKCVKNVT- 1087 (1178)
Q Consensus 1026 g~I~iwd~~~~~----------------~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~-I~iwd~~~~~~~~~~~~~- 1087 (1178)
|.|++||+.++. ++..+.+|.+.|++++|+|+|++|++|+.||+ |++||+.++ .++..+.
T Consensus 159 g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~--~~~~~~~~ 236 (355)
T 3vu4_A 159 GQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG--VLVREFRR 236 (355)
T ss_dssp TCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC--CEEEEEEC
T ss_pred cEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC--cEEEEEEc
Confidence 999999999865 27788999999999999999999999999998 999999998 5667776
Q ss_pred c-cCCcEEEE--ecCCCEEEEEeCCCcEEEEEcCCCccccccCC-C-----CCccce--eEeeccCCCcccEEEEEEcCC
Q 001042 1088 I-HSSAILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGT-G-----SKMSGW--QLYRTPQKTVAVVRCIASDLE 1156 (1178)
Q Consensus 1088 ~-h~~~i~~i--s~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~-g-----~~~~~~--~~~~~~~~h~~~V~~lafspd 1156 (1178)
+ |...|.++ +|+|++|++|+.|++|++||+..........- + .....| ........+......++|++|
T Consensus 237 g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d 316 (355)
T 3vu4_A 237 GLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISE 316 (355)
T ss_dssp TTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSS
T ss_pred CCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCC
Confidence 5 88888766 79999999999999999999975422110000 0 000011 111112223334467999999
Q ss_pred CCEEEEEeCCCcEEEEECCC
Q 001042 1157 RKRICSGGRNGLLRLWEATI 1176 (1178)
Q Consensus 1157 g~~Las~s~Dg~V~IWdv~t 1176 (1178)
|++|++++.||.+++|++..
T Consensus 317 ~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 317 SSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp SEEEEEETTTTEEEEEEEEE
T ss_pred CCEEEEEeCCCeEEEEEEEc
Confidence 99999999999999999865
No 113
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=4.5e-26 Score=271.35 Aligned_cols=300 Identities=9% Similarity=0.082 Sum_probs=235.4
Q ss_pred EEeCCCcEEEEcCCC--CCceeeEeecccccc-eEEEecCCCEEEEEeCCCcEEEEECCCCcEEE-----EecCCCCceE
Q 001042 856 SGSTDCLVKIWDPSL--RGSELRATLKGHTRT-VRAINSDRGKVVSGSDDQSVLVWDKQTSQLLE-----ELKGHDAQVS 927 (1178)
Q Consensus 856 sgs~Dg~I~iWd~~~--~~~~~~~~l~~h~~~-V~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~-----~l~~h~~~V~ 927 (1178)
+++.++.+++|.++. ........+..+... ..++++++..+++++.++.|++||+.+++... .+.+|...|.
T Consensus 94 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~ 173 (433)
T 3bws_A 94 RKPEELNEKLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVE 173 (433)
T ss_dssp SSGGGGTTCEEECCBTTCSEEEEEEEECSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEE
T ss_pred cccCCCceEEEEECCCCCcceEEEEEcCCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCcee
Confidence 455566556665543 222455555555433 23678877778888888999999999999887 4457899999
Q ss_pred EEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEe-CCCeEEEEECCCCceEEEEecC
Q 001042 928 CVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGG-RDAVANIWDIRAGRQMHKFLGH 1005 (1178)
Q Consensus 928 ~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs-~dg~I~lwD~~~~~~~~~~~~~ 1005 (1178)
+++|+ ++..+++++.|+.|++||+++++.+..+..+...+.+++|+|+++.+++++ .|+.|++||+++++.+..+..+
T Consensus 174 ~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 253 (433)
T 3bws_A 174 TISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI 253 (433)
T ss_dssp EEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC
T ss_pred EEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC
Confidence 99998 677888999999999999999999998888889999999999999886554 7999999999999988877654
Q ss_pred CccEEEEEEc--CCEEEEEe--------CCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEE-EEEeCCCcEEEEE
Q 001042 1006 TKWIRSIRMD--RDTVITGS--------DDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGI-ITGSSDGLLRFWE 1074 (1178)
Q Consensus 1006 ~~~v~~l~~~--~~~l~sgs--------~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L-~sgs~Dg~I~iwd 1074 (1178)
..+.+++++ ++.+++++ .||.|++||+.+++....+ .|...+.+++|+|+++.+ ++++.|+.|++||
T Consensus 254 -~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d 331 (433)
T 3bws_A 254 -GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYD 331 (433)
T ss_dssp -SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEE
T ss_pred -CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEE
Confidence 458899995 44788877 5889999999999877666 356689999999999755 6668999999999
Q ss_pred CCCCceEEEEEecccCCcEE--EEecCCCEEEEEeC---------------CCcEEEEEcCCCccccccCCCCCccceeE
Q 001042 1075 NDDGGIKCVKNVTIHSSAIL--SINAGDHWLGIGAA---------------DNSMSLFHRPQERLGGFSGTGSKMSGWQL 1137 (1178)
Q Consensus 1075 ~~~~~~~~~~~~~~h~~~i~--~is~dg~~Lasgs~---------------Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~ 1137 (1178)
+.++ .....+. +...+. +++|+|+++++++. ||.|++||..++ +.
T Consensus 332 ~~~~--~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~---------------~~ 393 (433)
T 3bws_A 332 LKEK--KVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD---------------TV 393 (433)
T ss_dssp TTTT--EEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT---------------EE
T ss_pred CCCC--cEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCC---------------cE
Confidence 9988 4444444 444454 45899999988876 579999999743 33
Q ss_pred eeccCCCcccEEEEEEcCCCCEEEEEeC-CCcEEEEECCC
Q 001042 1138 YRTPQKTVAVVRCIASDLERKRICSGGR-NGLLRLWEATI 1176 (1178)
Q Consensus 1138 ~~~~~~h~~~V~~lafspdg~~Las~s~-Dg~V~IWdv~t 1176 (1178)
...... ...+.+++|+|||++|++++. ||.|++|+++.
T Consensus 394 ~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 394 KEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred EEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 333333 346899999999999998875 99999999863
No 114
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=4e-26 Score=273.96 Aligned_cols=279 Identities=12% Similarity=0.135 Sum_probs=221.9
Q ss_pred cccceEEEecCCCEEEEEeCCCcEEEEECCCCc---EEEEecC-------------------------------------
Q 001042 882 HTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQ---LLEELKG------------------------------------- 921 (1178)
Q Consensus 882 h~~~V~~~s~d~~~l~sgs~dg~I~iwd~~t~~---~~~~l~~------------------------------------- 921 (1178)
|.-...+++++|++++++ .++.|++||+.+|+ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 333445679999966655 57899999999998 6655543
Q ss_pred -----------------CCCceEEEEEe-CCCeE-EEEeCCCeEEEEeCC--CCeEEEEec--CCCCCEEEEEEeCCCCE
Q 001042 922 -----------------HDAQVSCVRML-SGERV-LTASHDGTVKMWDVR--TDTCVATVG--RCSSAVLCMEYDDSTGI 978 (1178)
Q Consensus 922 -----------------h~~~V~~l~~~-~~~~l-~sgs~dg~V~iwd~~--~~~~~~~~~--~~~~~I~~l~~sp~~~~ 978 (1178)
|.+.|++++|+ ++..+ ++|+.||+|++||+. +++.+..+. .+...|.+++|+|++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 163 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT 163 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence 33379999999 67775 889999999999999 888887775 56788999999999999
Q ss_pred EEEEeCCCeEEEEECCCCceEE----EEecCCccEEEEEEcCC-----EEEEEeCCCcEEEEEcCCCeeeeE-eccCCCc
Q 001042 979 LAAGGRDAVANIWDIRAGRQMH----KFLGHTKWIRSIRMDRD-----TVITGSDDWTARMWSISRGTCDAV-LACHAGP 1048 (1178)
Q Consensus 979 l~sgs~dg~I~lwD~~~~~~~~----~~~~~~~~v~~l~~~~~-----~l~sgs~dg~I~iwd~~~~~~~~~-~~~h~~~ 1048 (1178)
|++|+.+|.+++||+.+++... .+.+|...|.+++|+++ ++++|+.|+.|++||+++++.+.. +.+|.+.
T Consensus 164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~ 243 (450)
T 2vdu_B 164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHF 243 (450)
T ss_dssp EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSC
T ss_pred EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCc
Confidence 9999999999999998877554 67789999999999654 999999999999999999988877 5589999
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecc-------------------------cCCcEEEE--ecCCC
Q 001042 1049 VQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTI-------------------------HSSAILSI--NAGDH 1101 (1178)
Q Consensus 1049 I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~-------------------------h~~~i~~i--s~dg~ 1101 (1178)
|++++|+ ++++|++|+.|+.|++||+.+++ ++..+.. ....+.++ +|+++
T Consensus 244 v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 320 (450)
T 2vdu_B 244 VSSICCG-KDYLLLSAGGDDKIFAWDWKTGK--NLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLP 320 (450)
T ss_dssp EEEEEEC-STTEEEEEESSSEEEEEETTTCC--EEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSS
T ss_pred eEEEEEC-CCCEEEEEeCCCeEEEEECCCCc--EeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCC
Confidence 9999999 99999999999999999999984 4444432 12345444 78999
Q ss_pred EEEEEe-CCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeC------CCcEEEEEC
Q 001042 1102 WLGIGA-ADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGR------NGLLRLWEA 1174 (1178)
Q Consensus 1102 ~Lasgs-~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~------Dg~V~IWdv 1174 (1178)
++++++ .|+.|++|++... .+. .+.....+.+| ..|.+++|+|++.++++++. +..|.+|.+
T Consensus 321 ~l~~~~~~d~~i~iw~~~~~-------~~~---~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~ 389 (450)
T 2vdu_B 321 FVAFFVEATKCIIILEMSEK-------QKG---DLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEY 389 (450)
T ss_dssp EEEEEETTCSEEEEEEECSS-------STT---CEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEE
T ss_pred EEEEEECCCCeEEEEEeccC-------CCC---ceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEE
Confidence 999999 8999999999211 111 12455556667 78999999996544444343 556899976
Q ss_pred C
Q 001042 1175 T 1175 (1178)
Q Consensus 1175 ~ 1175 (1178)
.
T Consensus 390 ~ 390 (450)
T 2vdu_B 390 N 390 (450)
T ss_dssp E
T ss_pred E
Confidence 5
No 115
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2e-26 Score=276.56 Aligned_cols=295 Identities=13% Similarity=0.095 Sum_probs=226.1
Q ss_pred cceEEEEecCCCCcccccccc-eeeccccccc---CCCCCCCCCC--------------------Cc-------------
Q 001042 769 RSWVQSMFSREASSRSHSFSR-VRKWTSDAAN---ENGTPRKQDS--------------------TA------------- 811 (1178)
Q Consensus 769 ~~i~~~aFSpdg~~las~~~d-I~vWd~~~~~---~~~~~~~~~~--------------------~~------------- 811 (1178)
.++.+++|||||++++++..+ |++||+.+++ .......... ..
T Consensus 5 ~p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSI 84 (450)
T ss_dssp CCCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC------------------------------------
T ss_pred ccEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccc
Confidence 467889999999988887766 9999998877 2111100000 00
Q ss_pred --CCcccccceEEecccccceEEEEeeeccceeccccccCCCCEE-EEEeCCCcEEEEcCCCCCceeeEeec--ccccce
Q 001042 812 --GGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFF-ISGSTDCLVKIWDPSLRGSELRATLK--GHTRTV 886 (1178)
Q Consensus 812 --~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~L-asgs~Dg~I~iWd~~~~~~~~~~~l~--~h~~~V 886 (1178)
.............+|.+.|++++|+ |++++| ++|+.||+|++||+..........+. .|...|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~v~~~~~s------------~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v 152 (450)
T 2vdu_B 85 KRTAAKVPSPGLGAPPIYSYIRNLRLT------------SDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRP 152 (450)
T ss_dssp ---------------CCCCCEEEEEEC------------TTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCE
T ss_pred cccCccccCCCCCCCccCCceEEEEEc------------CCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCc
Confidence 0000011122344688899999998 899996 89999999999998632444555555 566777
Q ss_pred EE--EecCCCEEEEEeCCCcEEEEECCCCcEEE----EecCCCCceEEEEEe-C---CCeEEEEeCCCeEEEEeCCCCeE
Q 001042 887 RA--INSDRGKVVSGSDDQSVLVWDKQTSQLLE----ELKGHDAQVSCVRML-S---GERVLTASHDGTVKMWDVRTDTC 956 (1178)
Q Consensus 887 ~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~----~l~~h~~~V~~l~~~-~---~~~l~sgs~dg~V~iwd~~~~~~ 956 (1178)
.+ ++|++++|++|+.+|.+++|++.+++... .+.+|...|++++|+ + +..+++|+.|++|++||+.+++.
T Consensus 153 ~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~ 232 (450)
T 2vdu_B 153 NAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFI 232 (450)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTC
T ss_pred eEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCce
Confidence 75 58999999999999999999998877544 778899999999999 5 66899999999999999999988
Q ss_pred EEE-ecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecC-------------------------CccEE
Q 001042 957 VAT-VGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGH-------------------------TKWIR 1010 (1178)
Q Consensus 957 ~~~-~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~-------------------------~~~v~ 1010 (1178)
+.. +.+|...|.+++|+ ++++|++|+.|+.|++||+++++.+..+..+ ...|.
T Consensus 233 ~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 311 (450)
T 2vdu_B 233 VDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVS 311 (450)
T ss_dssp EEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEE
T ss_pred eeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEE
Confidence 877 55899999999999 9999999999999999999999988887632 34688
Q ss_pred EEEEc--CCEEEEEe-CCCcEEEEEc--CCC---eeeeEeccCCCcEEEEEEecCCCEEEEEeC------CCcEEEEECC
Q 001042 1011 SIRMD--RDTVITGS-DDWTARMWSI--SRG---TCDAVLACHAGPVQCVEYSSSDRGIITGSS------DGLLRFWEND 1076 (1178)
Q Consensus 1011 ~l~~~--~~~l~sgs-~dg~I~iwd~--~~~---~~~~~~~~h~~~I~~l~~spdg~~L~sgs~------Dg~I~iwd~~ 1076 (1178)
++++. ++++++++ .|+.|++||+ .++ +.+..+..| +.|.+++|+|++.++++++. +..|.+|.++
T Consensus 312 ~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 312 KIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp EEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence 88885 55888888 8999999999 555 677778877 88999999996533333332 4558888765
Q ss_pred C
Q 001042 1077 D 1077 (1178)
Q Consensus 1077 ~ 1077 (1178)
.
T Consensus 391 ~ 391 (450)
T 2vdu_B 391 L 391 (450)
T ss_dssp T
T ss_pred c
Confidence 4
No 116
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=1.8e-26 Score=257.65 Aligned_cols=254 Identities=13% Similarity=0.121 Sum_probs=200.2
Q ss_pred cccccccc-eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeecc-------------ceeccccc
Q 001042 782 SRSHSFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKR-------------EVWDLVGD 847 (1178)
Q Consensus 782 ~las~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~-------------~~~~~~~~ 847 (1178)
.+++++.. |++|+...+.. ...++++++|+.+|..|.++|.. .....+++
T Consensus 56 ~~~~~~~~~v~lw~~~~~~~----------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~ 119 (356)
T 2w18_A 56 CIITACEDVVSLWKALDAWQ----------------WEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFC 119 (356)
T ss_dssp EEEEEESSEEEEEEESSSSB----------------EEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC
T ss_pred EEEEeccceEEEcccCCCcc----------------ceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEE
Confidence 57777888 99999997621 12799999999999999998621 12344666
Q ss_pred cCC----CCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEEe--CCCcEEEEEC-CCCcEEEEec
Q 001042 848 RED----AGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGS--DDQSVLVWDK-QTSQLLEELK 920 (1178)
Q Consensus 848 s~d----~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sgs--~dg~I~iwd~-~t~~~~~~l~ 920 (1178)
+|| ++++++++.+ +++|+ + ++++.+.+++ .|+.|++|++ .+|+.+..+.
T Consensus 120 spd~~~~~~~l~s~g~~--~~v~~---------------------l-~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~ 175 (356)
T 2w18_A 120 SSDDESEKQVLLKSGNI--KAVLG---------------------L-TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQF 175 (356)
T ss_dssp ------CCEEEEEEEEE--EEEEE---------------------E-TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEE
T ss_pred CCCccccccEEEeCCCe--EEEEe---------------------c-CCCcEEEecccCCCCcEEEEEECCCCceeeeec
Confidence 677 7777776643 55564 2 3444455533 5999999999 5588888888
Q ss_pred CCCCceEEEEEe----CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCC---CCEEEEEEeCCCCEE------------EE
Q 001042 921 GHDAQVSCVRML----SGERVLTASHDGTVKMWDVRTDTCVATVGRCS---SAVLCMEYDDSTGIL------------AA 981 (1178)
Q Consensus 921 ~h~~~V~~l~~~----~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~---~~I~~l~~sp~~~~l------------~s 981 (1178)
+|...+..++|+ ++..+++|+.|++|++||+++|++++++.++. ..+.+++|+|+|.++ ++
T Consensus 176 ~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laS 255 (356)
T 2w18_A 176 LMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESL 255 (356)
T ss_dssp ECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC----------
T ss_pred cCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeec
Confidence 999999888887 35889999999999999999999999997643 367788999999876 56
Q ss_pred EeCCCeEEEEECCCCceEEEE-----ecCCccEEEEEEcCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEE-EEEEe
Q 001042 982 GGRDAVANIWDIRAGRQMHKF-----LGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQ-CVEYS 1055 (1178)
Q Consensus 982 gs~dg~I~lwD~~~~~~~~~~-----~~~~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~-~l~~s 1055 (1178)
|+.|++|++||..+++.+..+ .+|...+.+..+++..+++|+.||+|++||+.+++++.++.+|...+. +++|+
T Consensus 256 Gs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafS 335 (356)
T 2w18_A 256 RSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWS 335 (356)
T ss_dssp --CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEEC
T ss_pred cCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEEC
Confidence 788999999999999987765 366666767777788999999999999999999999999999987655 58999
Q ss_pred cCCCEEEEEeCCCcEEEEEC
Q 001042 1056 SSDRGIITGSSDGLLRFWEN 1075 (1178)
Q Consensus 1056 pdg~~L~sgs~Dg~I~iwd~ 1075 (1178)
|||++|++|+.|++|++||+
T Consensus 336 PDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 336 GTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp SSSSEEEEECTTSCEEEEEE
T ss_pred CCCCEEEEEECCCcEEEecC
Confidence 99999999999999999985
No 117
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.95 E-value=3.4e-26 Score=272.98 Aligned_cols=247 Identities=20% Similarity=0.377 Sum_probs=214.1
Q ss_pred eEEecccccceEEEEeeeccceeccccccCC-CCEEEEEeCCCcEEEEcCCC--------CCceeeEeecccccceEE--
Q 001042 820 IRIIRGHAGAITALHCVTKREVWDLVGDRED-AGFFISGSTDCLVKIWDPSL--------RGSELRATLKGHTRTVRA-- 888 (1178)
Q Consensus 820 ~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d-~~~Lasgs~Dg~I~iWd~~~--------~~~~~~~~l~~h~~~V~~-- 888 (1178)
.....+|.+.|++++|+ |+ +.++|+|+.||.|++||+.. ........+.+|...+.+
T Consensus 121 ~~~~~~h~~~v~~l~~~------------p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 188 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYM------------PQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLS 188 (430)
T ss_dssp EEEEEEESSCCSEEEEE------------TTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEE
T ss_pred EEEEEcCCCcEEEEEEC------------CCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEE
Confidence 45567899999999998 65 78999999999999999863 114556788899988874
Q ss_pred EecCCC-EEEEEeCCCcEEEEECCCCcE-------EEEecCCCCceEEEEEe--CCCeEEEEeCCCeEEEEeCCCC---e
Q 001042 889 INSDRG-KVVSGSDDQSVLVWDKQTSQL-------LEELKGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTD---T 955 (1178)
Q Consensus 889 ~s~d~~-~l~sgs~dg~I~iwd~~t~~~-------~~~l~~h~~~V~~l~~~--~~~~l~sgs~dg~V~iwd~~~~---~ 955 (1178)
+++++. +|++|+.||.|++||+.++.. ...+.+|...|.+++|+ ++..+++++.||.|++||++++ +
T Consensus 189 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~ 268 (430)
T 2xyi_A 189 WNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK 268 (430)
T ss_dssp ECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSS
T ss_pred eCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCc
Confidence 578887 999999999999999987322 45677899999999998 4678899999999999999987 5
Q ss_pred EEEEecCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCC-CceEEEEecCCccEEEEEEcCC---EEEEEeCCCcEEE
Q 001042 956 CVATVGRCSSAVLCMEYDDSTG-ILAAGGRDAVANIWDIRA-GRQMHKFLGHTKWIRSIRMDRD---TVITGSDDWTARM 1030 (1178)
Q Consensus 956 ~~~~~~~~~~~I~~l~~sp~~~-~l~sgs~dg~I~lwD~~~-~~~~~~~~~~~~~v~~l~~~~~---~l~sgs~dg~I~i 1030 (1178)
.+..+..|...|++++|+|++. .+++|+.||.|++||+++ +..+..+..|...|.+++|+++ .+++++.||.|++
T Consensus 269 ~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~i 348 (430)
T 2xyi_A 269 PSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV 348 (430)
T ss_dssp CSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEE
T ss_pred ceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEE
Confidence 6677778999999999999887 688999999999999998 5678889999999999999653 6999999999999
Q ss_pred EEcCC--------------CeeeeEeccCCCcEEEEEEecCCC-EEEEEeCCCcEEEEECCCC
Q 001042 1031 WSISR--------------GTCDAVLACHAGPVQCVEYSSSDR-GIITGSSDGLLRFWENDDG 1078 (1178)
Q Consensus 1031 wd~~~--------------~~~~~~~~~h~~~I~~l~~spdg~-~L~sgs~Dg~I~iwd~~~~ 1078 (1178)
||+.. .+.+..+.+|...|++++|+|+++ ++++++.||.|++|++..+
T Consensus 349 wd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 349 WDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 99987 356677788999999999999999 8999999999999998754
No 118
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.6e-26 Score=263.82 Aligned_cols=270 Identities=11% Similarity=0.113 Sum_probs=208.7
Q ss_pred EecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceeccccccCCCC
Q 001042 775 MFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAG 852 (1178)
Q Consensus 775 aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~ 852 (1178)
.+.+|++.+++|+.| |++||+.+++ .+..+. .+.|.++.|+ |+
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~-------------------~~~~~~--~~~v~~~~~~------------~~-- 87 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSK-------------------TITTIT--TPNPRTGGEH------------PA-- 87 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSS-------------------CEEEEE--EECCCTTCCC------------CS--
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCc-------------------EEEEEe--cCCceeeeeC------------Cc--
Confidence 566788888888888 8888888766 344444 4556666665 44
Q ss_pred EEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEec-CCCCceEEEEE
Q 001042 853 FFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELK-GHDAQVSCVRM 931 (1178)
Q Consensus 853 ~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~-~h~~~V~~l~~ 931 (1178)
+++|+.|++|++|+.. + .+.+||..+++.+..+. +|.+.|.+++|
T Consensus 88 -~~s~s~D~~i~~w~~~--~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 133 (343)
T 3lrv_A 88 -IISRGPCNRLLLLYPG--N-------------------------------QITILDSKTNKVLREIEVDSANEIIYMYG 133 (343)
T ss_dssp -EEEECSTTEEEEEETT--T-------------------------------EEEEEETTTCCEEEEEECCCSSCEEEEEC
T ss_pred -eEEecCCCeEEEEEcc--C-------------------------------ceEEeecCCcceeEEeecCCCCCEEEEEc
Confidence 8888888888888854 1 46678888888666655 78889999999
Q ss_pred eC---CCeEEEEeCCCeEEEEeCCCCeEEEEec-CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceE-EEEec-C
Q 001042 932 LS---GERVLTASHDGTVKMWDVRTDTCVATVG-RCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQM-HKFLG-H 1005 (1178)
Q Consensus 932 ~~---~~~l~sgs~dg~V~iwd~~~~~~~~~~~-~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~-~~~~~-~ 1005 (1178)
++ ++++++|+.||+|++||+++++...... .+...+.+++|+|++.++++|+.||.|++||+++++.+ ..+.. |
T Consensus 134 ~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h 213 (343)
T 3lrv_A 134 HNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDE 213 (343)
T ss_dssp CC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCT
T ss_pred CCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccC
Confidence 85 6789999999999999999999877664 34557999999999999999999999999999999988 78888 9
Q ss_pred CccEEEEEEcC--CEEEEEeCCCcEEEEEcCCCeeeeEecc---CCCcEE--EEEEecCCCEEEEEeC-CCcEEEEECCC
Q 001042 1006 TKWIRSIRMDR--DTVITGSDDWTARMWSISRGTCDAVLAC---HAGPVQ--CVEYSSSDRGIITGSS-DGLLRFWENDD 1077 (1178)
Q Consensus 1006 ~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~---h~~~I~--~l~~spdg~~L~sgs~-Dg~I~iwd~~~ 1077 (1178)
.+.|.+++|++ .++++++ |+.|++||+++++....+.. |...+. +++|+|+|++|++++. |+.|++|++.+
T Consensus 214 ~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~ 292 (343)
T 3lrv_A 214 EAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDK 292 (343)
T ss_dssp TSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred CCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcc
Confidence 99999999954 4899999 55999999999877655443 434444 6999999999999998 99999999976
Q ss_pred CceEEEEEecccCCcEEEEec---CCCEEEEEeCCCcEEEEEcC
Q 001042 1078 GGIKCVKNVTIHSSAILSINA---GDHWLGIGAADNSMSLFHRP 1118 (1178)
Q Consensus 1078 ~~~~~~~~~~~h~~~i~~is~---dg~~Lasgs~Dg~I~iwd~~ 1118 (1178)
+...... .......+++ +...+++++.||.+.++-..
T Consensus 293 ~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 293 KTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp TTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred cccceEe----cCceeEecCccccccceeEEEecCCceEEEEec
Confidence 5322111 1111222344 77899999999999988654
No 119
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=7.5e-25 Score=260.78 Aligned_cols=279 Identities=10% Similarity=0.065 Sum_probs=226.6
Q ss_pred ceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeE-----eecccccceEE--Eec
Q 001042 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRA-----TLKGHTRTVRA--INS 891 (1178)
Q Consensus 819 ~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~-----~l~~h~~~V~~--~s~ 891 (1178)
.+..+..+. .+.+++|+ |++.++++++.|++|++||+. +.+... .+.+|...+.+ +++
T Consensus 115 ~~~~~~~~~-~~~~~~~s------------~~~~~~~~~~~~~~i~~~d~~--~g~~~~~~~~~~~~~~~~~v~~~~~~~ 179 (433)
T 3bws_A 115 FISRFKTGF-QPKSVRFI------------DNTRLAIPLLEDEGMDVLDIN--SGQTVRLSPPEKYKKKLGFVETISIPE 179 (433)
T ss_dssp EEEEEECSS-CBCCCEES------------SSSEEEEEBTTSSSEEEEETT--TCCEEEECCCHHHHTTCCEEEEEEEGG
T ss_pred EEEEEcCCC-CceEEEEe------------CCCeEEEEeCCCCeEEEEECC--CCeEeeecCcccccccCCceeEEEEcC
Confidence 344454443 45577776 777888888889999999977 333334 44578888875 478
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEE-EEeCCCeEEEEeCCCCeEEEEecCCCCCEEE
Q 001042 892 DRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVL-TASHDGTVKMWDVRTDTCVATVGRCSSAVLC 969 (1178)
Q Consensus 892 d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~-sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~ 969 (1178)
++..+++++.|+.|++||+++++.+..+..|...+.+++|+ ++..++ +++.|+.|++||+++++.+..+.. ...+.+
T Consensus 180 ~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~ 258 (433)
T 3bws_A 180 HNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRG 258 (433)
T ss_dssp GTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEE
T ss_pred CCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceE
Confidence 99999999999999999999999999999999999999999 566665 555899999999999998888755 456999
Q ss_pred EEEeCCCCEEEEEe--------CCCeEEEEECCCCceEEEEecCCccEEEEEEcCC---EEEEEeCCCcEEEEEcCCCee
Q 001042 970 MEYDDSTGILAAGG--------RDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD---TVITGSDDWTARMWSISRGTC 1038 (1178)
Q Consensus 970 l~~sp~~~~l~sgs--------~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~---~l~sgs~dg~I~iwd~~~~~~ 1038 (1178)
++|+|+++.+++++ .||.|++||+++++.+..+ .+...+.+++|+++ .+++++.|+.|++||+.+++.
T Consensus 259 ~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~ 337 (433)
T 3bws_A 259 LLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKV 337 (433)
T ss_dssp EEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEE
T ss_pred EEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcE
Confidence 99999999999988 5889999999999877665 55568888999543 456778999999999999988
Q ss_pred eeEeccCCCcEEEEEEecCCCEEEEEeC---------------CCcEEEEECCCCceEEEEEecccCCcEE--EEecCCC
Q 001042 1039 DAVLACHAGPVQCVEYSSSDRGIITGSS---------------DGLLRFWENDDGGIKCVKNVTIHSSAIL--SINAGDH 1101 (1178)
Q Consensus 1039 ~~~~~~h~~~I~~l~~spdg~~L~sgs~---------------Dg~I~iwd~~~~~~~~~~~~~~h~~~i~--~is~dg~ 1101 (1178)
...+. +...+.+++|+|+|+++++++. ||.|++||..++ ..+..+..+ ..+. +++|+|+
T Consensus 338 ~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~--~~~~~~~~~-~~~~~~~~s~dg~ 413 (433)
T 3bws_A 338 QKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD--TVKEFWEAG-NQPTGLDVSPDNR 413 (433)
T ss_dssp EEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT--EEEEEEECS-SSEEEEEECTTSC
T ss_pred EEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCC--cEEEEecCC-CCCceEEEcCCCC
Confidence 87776 6778999999999999988876 579999999988 455555543 3444 4589999
Q ss_pred EEEEEeC-CCcEEEEEcC
Q 001042 1102 WLGIGAA-DNSMSLFHRP 1118 (1178)
Q Consensus 1102 ~Lasgs~-Dg~I~iwd~~ 1118 (1178)
+|++++. |+.|++|++.
T Consensus 414 ~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 414 YLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEEEETTTTEEEEEEET
T ss_pred EEEEEECCCCeEEEEEec
Confidence 9998875 9999999985
No 120
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.4e-26 Score=265.29 Aligned_cols=262 Identities=8% Similarity=0.044 Sum_probs=208.8
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEeCCCeEEEEeCCCeEEEEeCC---------CCeEEEEe
Q 001042 890 NSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVR---------TDTCVATV 960 (1178)
Q Consensus 890 s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~---------~~~~~~~~ 960 (1178)
..++..+++|+.||+|++||+.+++.+..+. ...|.++.+++. +++++.|++|++|+.. +++.+..+
T Consensus 45 ~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~ 120 (343)
T 3lrv_A 45 YYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSKTNKVLREI 120 (343)
T ss_dssp SEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred cCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeecCCcceeEEe
Confidence 4678899999999999999999999888776 456777777755 9999999999999665 55545444
Q ss_pred c-CCCCCEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCceEEEEec-CCccEEEEEEc--CCEEEEEeCCCcEEEEEcC
Q 001042 961 G-RCSSAVLCMEYDD--STGILAAGGRDAVANIWDIRAGRQMHKFLG-HTKWIRSIRMD--RDTVITGSDDWTARMWSIS 1034 (1178)
Q Consensus 961 ~-~~~~~I~~l~~sp--~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~-~~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~ 1034 (1178)
. .|...|.+++|+| +++++++|+.||.|++||+++++.+..... +...+.+++|+ +.++++|+.||.|++||++
T Consensus 121 ~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~ 200 (343)
T 3lrv_A 121 EVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLS 200 (343)
T ss_dssp ECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESS
T ss_pred ecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence 3 5668899999999 999999999999999999999998776643 45589999995 4599999999999999999
Q ss_pred CCeee-eEecc-CCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceE-EEEEecccCCc----EEEEecCCCEEEEEe
Q 001042 1035 RGTCD-AVLAC-HAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIK-CVKNVTIHSSA----ILSINAGDHWLGIGA 1107 (1178)
Q Consensus 1035 ~~~~~-~~~~~-h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~-~~~~~~~h~~~----i~~is~dg~~Lasgs 1107 (1178)
+++.. ..+.. |.++|++++|+|+|.+|++++ |+.|++||+++++.. .+..+..|... ..+++|+|++|++++
T Consensus 201 ~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s 279 (343)
T 3lrv_A 201 SPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYS 279 (343)
T ss_dssp CTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEE
T ss_pred CCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEec
Confidence 99887 78888 999999999999999999999 559999999987321 11111112222 467799999999999
Q ss_pred C-CCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcC---CCCEEEEEeCCCcEEEEECC
Q 001042 1108 A-DNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDL---ERKRICSGGRNGLLRLWEAT 1175 (1178)
Q Consensus 1108 ~-Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafsp---dg~~Las~s~Dg~V~IWdv~ 1175 (1178)
. |+.|++|++.... ..|.. ..+..++|++ +++.+++++.||.+.+|-..
T Consensus 280 ~~d~~i~v~~~~~~~-----------~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 280 NESNSLTIYKFDKKT-----------KNWTK--------DEESALCLQSDTADFTDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp TTTTEEEEEEECTTT-----------CSEEE--------EEEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred CCCCcEEEEEEcccc-----------cceEe--------cCceeEecCccccccceeEEEecCCceEEEEec
Confidence 8 9999999986321 12333 4577888888 88999999999999887543
No 121
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.95 E-value=1.2e-24 Score=255.30 Aligned_cols=317 Identities=12% Similarity=0.139 Sum_probs=236.1
Q ss_pred CEEEEEeCCCcEEEEcCCCCCceeeEeecccccceE--EEecCCCEE-EEEeCCCcEEEEECCCCcEEEEecCCCCceEE
Q 001042 852 GFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKV-VSGSDDQSVLVWDKQTSQLLEELKGHDAQVSC 928 (1178)
Q Consensus 852 ~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~--~~s~d~~~l-~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~ 928 (1178)
.++++++.|+.|++||+. ..+....+.+|.. +. +++++++++ ++++.|+.|++||+.+++.+..+..+. .+.+
T Consensus 3 ~l~vs~~~d~~v~v~d~~--~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~ 78 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVT--SNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQG 78 (391)
T ss_dssp EEEEEETTTTEEEEEETT--TTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEE
T ss_pred EEEEEcCCCCEEEEEECC--CCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccc
Confidence 467899999999999976 4566677777755 44 568999987 667789999999999999998887655 8999
Q ss_pred EEEe-CCCeEE-EEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEE-EEEeCCCeEEEEECCCCceEEEEecC
Q 001042 929 VRML-SGERVL-TASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGIL-AAGGRDAVANIWDIRAGRQMHKFLGH 1005 (1178)
Q Consensus 929 l~~~-~~~~l~-sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l-~sgs~dg~I~lwD~~~~~~~~~~~~~ 1005 (1178)
++|+ +++.++ +++.++.|++||+.+++.+..+.. ...+.+++|+|+++.+ ++++.++.|++||+++++.+..+..+
T Consensus 79 ~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~ 157 (391)
T 1l0q_A 79 VAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG 157 (391)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred eEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC
Confidence 9999 566665 455679999999999998887754 4578999999999977 67778999999999999988888665
Q ss_pred CccEEEEEEcC--CEE-EEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEe---CCCcEEEEECCCCc
Q 001042 1006 TKWIRSIRMDR--DTV-ITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGS---SDGLLRFWENDDGG 1079 (1178)
Q Consensus 1006 ~~~v~~l~~~~--~~l-~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs---~Dg~I~iwd~~~~~ 1079 (1178)
..+.+++|++ +.+ ++++.++.|++||+++++....+. +...+.+++|+|+|+++++++ .++.|++||+.++
T Consensus 158 -~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~- 234 (391)
T 1l0q_A 158 -RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN- 234 (391)
T ss_dssp -SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT-
T ss_pred -CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC-
Confidence 4568888854 455 677889999999999998887776 566899999999999999888 6899999999988
Q ss_pred eEEEEEecccCCcE-EEEecCCCEE-EEEeCCCcEEEEEcCCCccccccCCCCCccc-eeEee-ccCCCcccEEEEEEcC
Q 001042 1080 IKCVKNVTIHSSAI-LSINAGDHWL-GIGAADNSMSLFHRPQERLGGFSGTGSKMSG-WQLYR-TPQKTVAVVRCIASDL 1155 (1178)
Q Consensus 1080 ~~~~~~~~~h~~~i-~~is~dg~~L-asgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~-~~~~~-~~~~h~~~V~~lafsp 1155 (1178)
..+..+..|.... .+++|+|+++ ++++.|+.|++||+.+++.......+..... -+.+. ...++...+.......
T Consensus 235 -~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~ 313 (391)
T 1l0q_A 235 -KITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNI 313 (391)
T ss_dssp -EEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESC
T ss_pred -eEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeeccccccccccccccccc
Confidence 5566666665432 4558999877 6678899999999986544322222211000 00000 1111111221122221
Q ss_pred C------C--CEEEEEeCCCcEEEEECCCC
Q 001042 1156 E------R--KRICSGGRNGLLRLWEATIN 1177 (1178)
Q Consensus 1156 d------g--~~Las~s~Dg~V~IWdv~tg 1177 (1178)
. . ..+.+.+.|..+++|++.+|
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g 343 (391)
T 1l0q_A 314 TSGYIFLSEPVQFTDLSKDATEWKWDFGDG 343 (391)
T ss_dssp CSSEEETTCCEEEEECCBSCSEEEEECSSS
T ss_pred ccccccccceEEEEeCCCCceEEEEECCCC
Confidence 1 1 34666778999999999776
No 122
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.95 E-value=1.4e-24 Score=254.66 Aligned_cols=298 Identities=10% Similarity=0.046 Sum_probs=233.4
Q ss_pred Ccccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceeccccccCCCCEE-EEE
Q 001042 781 SSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFF-ISG 857 (1178)
Q Consensus 781 ~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~L-asg 857 (1178)
..+++++.+ |++||+++++ .++.+.+|.. +.+++|+ ++++++ +++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~-------------------~~~~~~~~~~-~~~~~~s------------~dg~~l~~~~ 50 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNK-------------------VTATIPVGSN-PMGAVIS------------PDGTKVYVAN 50 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTE-------------------EEEEEECSSS-EEEEEEC------------TTSSEEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCe-------------------EEEEeecCCC-cceEEEC------------CCCCEEEEEC
Confidence 356666666 9999999877 6777777754 8999998 889876 677
Q ss_pred eCCCcEEEEcCCCCCceeeEeecccccceE--EEecCCCEEEEE-eCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-C
Q 001042 858 STDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKVVSG-SDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-S 933 (1178)
Q Consensus 858 s~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~--~~s~d~~~l~sg-s~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~ 933 (1178)
+.|++|++||+. ..+....+..+. .+. ++++++++++++ +.++.|++||+.+++.+..+..+ ..+.+++|+ +
T Consensus 51 ~~d~~i~v~d~~--~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~d 126 (391)
T 1l0q_A 51 AHSNDVSIIDTA--TNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPD 126 (391)
T ss_dssp GGGTEEEEEETT--TTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTT
T ss_pred CCCCeEEEEECC--CCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCC
Confidence 799999999976 455556665554 555 568999988655 46799999999999998887754 568999999 5
Q ss_pred CCeE-EEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEE-EEEeCCCeEEEEECCCCceEEEEecCCccEEE
Q 001042 934 GERV-LTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGIL-AAGGRDAVANIWDIRAGRQMHKFLGHTKWIRS 1011 (1178)
Q Consensus 934 ~~~l-~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l-~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~ 1011 (1178)
++.+ ++++.|+.|++||+.+++.+..+..+ ..+.+++|+|+++.+ ++++.++.|++||+++++....+. +...+.+
T Consensus 127 g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~ 204 (391)
T 1l0q_A 127 GKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSG 204 (391)
T ss_dssp SSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEE
T ss_pred CCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccc
Confidence 6666 68888999999999999988887654 567999999999987 567788999999999998887764 4567888
Q ss_pred EEEc--CCEEEEEe---CCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEE-EEEeCCCcEEEEECCCCceEEEEE
Q 001042 1012 IRMD--RDTVITGS---DDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGI-ITGSSDGLLRFWENDDGGIKCVKN 1085 (1178)
Q Consensus 1012 l~~~--~~~l~sgs---~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L-~sgs~Dg~I~iwd~~~~~~~~~~~ 1085 (1178)
++++ ++++++++ .++.|++||+.+++.+..+..|. .+.+++|+|+|+++ ++++.|+.|++||+.++ .....
T Consensus 205 ~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~--~~~~~ 281 (391)
T 1l0q_A 205 IAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATN--TITAT 281 (391)
T ss_dssp EEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTT--EEEEE
T ss_pred eEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCC--cEEEE
Confidence 9995 45777777 68999999999999988888665 57899999999987 66788999999999998 55555
Q ss_pred ecccCCcE-----------------EEEecC--------C--CEEEEEeCCCcEEEEEcCC
Q 001042 1086 VTIHSSAI-----------------LSINAG--------D--HWLGIGAADNSMSLFHRPQ 1119 (1178)
Q Consensus 1086 ~~~h~~~i-----------------~~is~d--------g--~~Lasgs~Dg~I~iwd~~~ 1119 (1178)
+..|..+. ..++.+ . ..+...+.|...++|+...
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 342 (391)
T 1l0q_A 282 MAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGD 342 (391)
T ss_dssp EECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSS
T ss_pred EECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCC
Confidence 55544332 112211 1 3455667788999999863
No 123
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=6.2e-27 Score=275.83 Aligned_cols=249 Identities=11% Similarity=0.079 Sum_probs=177.8
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCcEEE-----EecCCCCceEEEEEe---------CCCeEEEEeCCCeEEEEeCCC
Q 001042 888 AINSDRGKVVSGSDDQSVLVWDKQTSQLLE-----ELKGHDAQVSCVRML---------SGERVLTASHDGTVKMWDVRT 953 (1178)
Q Consensus 888 ~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~-----~l~~h~~~V~~l~~~---------~~~~l~sgs~dg~V~iwd~~~ 953 (1178)
++++++..+++|+.|++|++||.++++... .+.+|.+.|++++|+ +++.|++|+.|++|++||+.+
T Consensus 96 ~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~ 175 (393)
T 4gq1_A 96 SSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD 175 (393)
T ss_dssp -CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET
T ss_pred ecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCC
Confidence 346778899999999999999999886543 367999999999997 467899999999999999999
Q ss_pred CeEEEEecCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCceEEEE-------------------------ecCCc
Q 001042 954 DTCVATVGRCSSAVLCMEYDDSTG-ILAAGGRDAVANIWDIRAGRQMHKF-------------------------LGHTK 1007 (1178)
Q Consensus 954 ~~~~~~~~~~~~~I~~l~~sp~~~-~l~sgs~dg~I~lwD~~~~~~~~~~-------------------------~~~~~ 1007 (1178)
+.++..+..|...+.+++|+|++. +|++|+.||.|++||+++++..... .+|..
T Consensus 176 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 255 (393)
T 4gq1_A 176 EGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIAS 255 (393)
T ss_dssp TEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSS
T ss_pred CceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccc
Confidence 988888888999999999999874 7999999999999999987653322 34666
Q ss_pred cEEEEEE---cCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEE
Q 001042 1008 WIRSIRM---DRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVK 1084 (1178)
Q Consensus 1008 ~v~~l~~---~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~ 1084 (1178)
.+.++.| ++..+++++.|+++++||+..++....+..|...+..+.+.++++.+...+...
T Consensus 256 ~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 319 (393)
T 4gq1_A 256 SLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLL---------------- 319 (393)
T ss_dssp SCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSS----------------
T ss_pred cceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcce----------------
Confidence 7888887 456999999999999999999988888888888888887777654332111100
Q ss_pred EecccCCcEEEEecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEe
Q 001042 1085 NVTIHSSAILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGG 1164 (1178)
Q Consensus 1085 ~~~~h~~~i~~is~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s 1164 (1178)
..+..-..++.++++|+.||+|++||+.++ +....+.+|...|++++|+|||++||+++
T Consensus 320 ------~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~---------------~~~~~~~~~~~~V~svafspdG~~LA~as 378 (393)
T 4gq1_A 320 ------GACPHPRYMDYFATAHSQHGLIQLINTYEK---------------DSNSIPIQLGMPIVDFCWHQDGSHLAIAT 378 (393)
T ss_dssp ------CCEECSSCTTEEEEEETTTTEEEEEETTCT---------------TCCEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred ------eEEEccCCCCEEEEEECCCCEEEEEECCCC---------------cEEEEecCCCCcEEEEEEcCCCCEEEEEe
Confidence 001111235567888999999999999743 23334457888999999999999999998
Q ss_pred CCCcEEEEEC
Q 001042 1165 RNGLLRLWEA 1174 (1178)
Q Consensus 1165 ~Dg~V~IWdv 1174 (1178)
.|| +.+|++
T Consensus 379 ~~G-v~lvrL 387 (393)
T 4gq1_A 379 EGS-VLLTRL 387 (393)
T ss_dssp SSE-EEEEEE
T ss_pred CCC-eEEEEE
Confidence 776 555544
No 124
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.4e-26 Score=292.53 Aligned_cols=250 Identities=18% Similarity=0.293 Sum_probs=213.7
Q ss_pred EEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCC--CCeEEEEecCCCCCEEEEEEeCC--CCEEEEEeCCCeEEEE
Q 001042 917 EELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVR--TDTCVATVGRCSSAVLCMEYDDS--TGILAAGGRDAVANIW 991 (1178)
Q Consensus 917 ~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~--~~~~~~~~~~~~~~I~~l~~sp~--~~~l~sgs~dg~I~lw 991 (1178)
..+.+|.+.|++++|+ +++.+++|+.||+|++||+. +++....+.+|...|++++|+++ ++.+++|+.||.|++|
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence 4678999999999999 78899999999999999998 55677888899999999999988 9999999999999999
Q ss_pred ECCCCc--eEEEEecCCccEEEEEEc----CCEEEEEeCCCcEEEEEcCCC--eeeeEeccCCCcEEEEEEec-------
Q 001042 992 DIRAGR--QMHKFLGHTKWIRSIRMD----RDTVITGSDDWTARMWSISRG--TCDAVLACHAGPVQCVEYSS------- 1056 (1178)
Q Consensus 992 D~~~~~--~~~~~~~~~~~v~~l~~~----~~~l~sgs~dg~I~iwd~~~~--~~~~~~~~h~~~I~~l~~sp------- 1056 (1178)
|+.+++ .+..+.+|...|.+++|+ ++.+++|+.||.|++||++++ .....+.+|...|++++|+|
T Consensus 83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~ 162 (753)
T 3jro_A 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (753)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-----
T ss_pred ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc
Confidence 999987 677788899999999995 569999999999999999887 34556778999999999999
Q ss_pred ------CCCEEEEEeCCCcEEEEECCCCce--EEEEEecccCCcEEEE--ecC---CCEEEEEeCCCcEEEEEcCCCccc
Q 001042 1057 ------SDRGIITGSSDGLLRFWENDDGGI--KCVKNVTIHSSAILSI--NAG---DHWLGIGAADNSMSLFHRPQERLG 1123 (1178)
Q Consensus 1057 ------dg~~L~sgs~Dg~I~iwd~~~~~~--~~~~~~~~h~~~i~~i--s~d---g~~Lasgs~Dg~I~iwd~~~~~~~ 1123 (1178)
+++++++|+.||.|++||+.++.. .....+.+|...|.++ +|+ +.++++|+.||.|++||+.++..
T Consensus 163 ~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~- 241 (753)
T 3jro_A 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG- 241 (753)
T ss_dssp ----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSS-
T ss_pred ccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCC-
Confidence 589999999999999999987632 5566788999999777 688 89999999999999999975321
Q ss_pred cccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001042 1124 GFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATI 1176 (1178)
Q Consensus 1124 ~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~t 1176 (1178)
.. ........+|...|++++|+|+|++|++|+.||.|++|++.+
T Consensus 242 ------~~---~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 242 ------PW---KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp ------CC---BCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred ------cc---eeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 00 012333456888999999999999999999999999999985
No 125
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.94 E-value=5.1e-26 Score=271.42 Aligned_cols=270 Identities=14% Similarity=0.231 Sum_probs=214.8
Q ss_pred EEEEECCCCcEE-EEecCCCCceEEEEEeC--CCeEEEEeCCCeEEEEeCCC----------CeEEEEecCCCCCEEEEE
Q 001042 905 VLVWDKQTSQLL-EELKGHDAQVSCVRMLS--GERVLTASHDGTVKMWDVRT----------DTCVATVGRCSSAVLCME 971 (1178)
Q Consensus 905 I~iwd~~t~~~~-~~l~~h~~~V~~l~~~~--~~~l~sgs~dg~V~iwd~~~----------~~~~~~~~~~~~~I~~l~ 971 (1178)
+..+...+++.. .....|.+.|++++|++ +..+++++.||.|++||+.+ ......+.+|...+.+++
T Consensus 109 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 188 (430)
T 2xyi_A 109 FGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLS 188 (430)
T ss_dssp ---------CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEE
T ss_pred cccccCCCCceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEE
Confidence 333333444432 44567999999999995 46899999999999999986 567778889999999999
Q ss_pred EeCCCC-EEEEEeCCCeEEEEECCCCce-------EEEEecCCccEEEEEEcC---CEEEEEeCCCcEEEEEcCCC---e
Q 001042 972 YDDSTG-ILAAGGRDAVANIWDIRAGRQ-------MHKFLGHTKWIRSIRMDR---DTVITGSDDWTARMWSISRG---T 1037 (1178)
Q Consensus 972 ~sp~~~-~l~sgs~dg~I~lwD~~~~~~-------~~~~~~~~~~v~~l~~~~---~~l~sgs~dg~I~iwd~~~~---~ 1037 (1178)
|+|++. .|++|+.||.|++||+.++.. ...+.+|...|.+++|++ ..+++++.||.|++||++++ +
T Consensus 189 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~ 268 (430)
T 2xyi_A 189 WNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK 268 (430)
T ss_dssp ECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSS
T ss_pred eCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCc
Confidence 999988 999999999999999987432 456778999999999954 48999999999999999987 5
Q ss_pred eeeEeccCCCcEEEEEEecCCC-EEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE--ecCC-CEEEEEeCCCcEE
Q 001042 1038 CDAVLACHAGPVQCVEYSSSDR-GIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI--NAGD-HWLGIGAADNSMS 1113 (1178)
Q Consensus 1038 ~~~~~~~h~~~I~~l~~spdg~-~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~dg-~~Lasgs~Dg~I~ 1113 (1178)
....+..|...|++++|+|+++ ++++|+.||.|++||+++.. ..+..+.+|...|.++ +|++ .++++|+.||.|+
T Consensus 269 ~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~-~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~ 347 (430)
T 2xyi_A 269 PSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK-LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLH 347 (430)
T ss_dssp CSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT-SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCE
T ss_pred ceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC-CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEE
Confidence 7778889999999999999987 68899999999999998743 4566777899999776 6877 4799999999999
Q ss_pred EEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCC-EEEEEeCCCcEEEEECCC
Q 001042 1114 LFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERK-RICSGGRNGLLRLWEATI 1176 (1178)
Q Consensus 1114 iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~-~Las~s~Dg~V~IWdv~t 1176 (1178)
+||+.......... ...-...+++....+|...|++++|+|+++ +|++++.||.|+||++.+
T Consensus 348 iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 348 VWDLSKIGEEQSTE-DAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp EEEGGGTTCCCCHH-HHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred EEeCCCCccccCcc-ccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 99997421100000 000000145667789999999999999999 999999999999999875
No 126
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.94 E-value=2.9e-26 Score=270.13 Aligned_cols=296 Identities=8% Similarity=0.055 Sum_probs=200.3
Q ss_pred ceEEEEecCCCCcccc-cccc-eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccc-------
Q 001042 770 SWVQSMFSREASSRSH-SFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKRE------- 840 (1178)
Q Consensus 770 ~i~~~aFSpdg~~las-~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~------- 840 (1178)
.+..+.++|++..+++ |... |++|+......... ..........-.|..++..+.|++...
T Consensus 20 ~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (393)
T 4gq1_A 20 TTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGS----------TGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHD 89 (393)
T ss_dssp EEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSC----------CSEEEEEEEEEECSSCEEEEEECTTCEEECC---
T ss_pred EEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccc----------cccceeeeEEEecCCCeeeEeecCCccccccccC
Confidence 3344455666654444 4444 88897764331110 000001111223455666666654321
Q ss_pred -eeccccccCCCCEEEEEeCCCcEEEEcCCCCCc---eeeEeecccccceEEE--ec--------CCCEEEEEeCCCcEE
Q 001042 841 -VWDLVGDREDAGFFISGSTDCLVKIWDPSLRGS---ELRATLKGHTRTVRAI--NS--------DRGKVVSGSDDQSVL 906 (1178)
Q Consensus 841 -~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~---~~~~~l~~h~~~V~~~--s~--------d~~~l~sgs~dg~I~ 906 (1178)
......+++++.++|+|+.|++|+|||...... .....+.+|...|.++ +| |+++|++|+.|++|+
T Consensus 90 ~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~ 169 (393)
T 4gq1_A 90 GDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLI 169 (393)
T ss_dssp -------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEE
T ss_pred CCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEE
Confidence 122344567888999999999999999763322 2234578999999965 54 789999999999999
Q ss_pred EEECCCCcEEEEecCCCCceEEEEEeC-C-CeEEEEeCCCeEEEEeCCCCeEEEEe------------------------
Q 001042 907 VWDKQTSQLLEELKGHDAQVSCVRMLS-G-ERVLTASHDGTVKMWDVRTDTCVATV------------------------ 960 (1178)
Q Consensus 907 iwd~~t~~~~~~l~~h~~~V~~l~~~~-~-~~l~sgs~dg~V~iwd~~~~~~~~~~------------------------ 960 (1178)
|||+.++..+..+.+|...|.+++|++ + .++++|+.||+|++||+++++.....
T Consensus 170 ~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 249 (393)
T 4gq1_A 170 IWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCH 249 (393)
T ss_dssp EEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC----
T ss_pred EEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeee
Confidence 999999988888888999999999994 3 47999999999999999887643322
Q ss_pred -cCCCCCEEEEEEe-CCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEE----------------------cC
Q 001042 961 -GRCSSAVLCMEYD-DSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM----------------------DR 1016 (1178)
Q Consensus 961 -~~~~~~I~~l~~s-p~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~----------------------~~ 1016 (1178)
.+|...+.++.|+ ++++.+++++.|+.+++||+.+++....+..|...+..+.+ ++
T Consensus 250 ~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (393)
T 4gq1_A 250 SSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMD 329 (393)
T ss_dssp --CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTT
T ss_pred cccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCC
Confidence 2456678889887 79999999999999999999988777666655554443322 11
Q ss_pred CEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 001042 1017 DTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWEND 1076 (1178)
Q Consensus 1017 ~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~ 1076 (1178)
.++++|+.||.|++||+.+++......+|..+|++++|+|||++||+++.+| +.+|.+.
T Consensus 330 ~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 330 YFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp EEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred EEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 2677888999999999999999888889999999999999999999998776 6666553
No 127
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.94 E-value=4.6e-25 Score=246.30 Aligned_cols=260 Identities=11% Similarity=0.083 Sum_probs=186.3
Q ss_pred EEEEEeCCCcEEEEECCCC---cEEEEecCCCCceEEEEEeCC--CeEEEEeCC---CeEEEEeCCCC----eEEEEecC
Q 001042 895 KVVSGSDDQSVLVWDKQTS---QLLEELKGHDAQVSCVRMLSG--ERVLTASHD---GTVKMWDVRTD----TCVATVGR 962 (1178)
Q Consensus 895 ~l~sgs~dg~I~iwd~~t~---~~~~~l~~h~~~V~~l~~~~~--~~l~sgs~d---g~V~iwd~~~~----~~~~~~~~ 962 (1178)
.+++++. ..|++|+..++ +.+.++..|+.+|..+.+.++ +.+.++-.+ +.|+..-+... .....-.+
T Consensus 56 ~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g 134 (356)
T 2w18_A 56 CIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSG 134 (356)
T ss_dssp EEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEE
T ss_pred EEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCC
Confidence 3556665 68999999998 889999999999999988842 222222111 11111111111 11111122
Q ss_pred CCCCEEEEEEeCCCCEEEEEe--CCCeEEEEECC-CCceEEEEecCCccEEEEEEc-----CCEEEEEeCCCcEEEEEcC
Q 001042 963 CSSAVLCMEYDDSTGILAAGG--RDAVANIWDIR-AGRQMHKFLGHTKWIRSIRMD-----RDTVITGSDDWTARMWSIS 1034 (1178)
Q Consensus 963 ~~~~I~~l~~sp~~~~l~sgs--~dg~I~lwD~~-~~~~~~~~~~~~~~v~~l~~~-----~~~l~sgs~dg~I~iwd~~ 1034 (1178)
+...+.++ ++++.+.+++ .|+.|++|++. +++.+..+.+|...+..++|+ +..+++|+.|++|++||++
T Consensus 135 ~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~ 211 (356)
T 2w18_A 135 NIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLK 211 (356)
T ss_dssp EEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETT
T ss_pred CeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECC
Confidence 23334443 4566555543 59999999994 488888888888777766663 3699999999999999999
Q ss_pred CCeeeeEeccCC---CcEEEEEEecCCCEE------------EEEeCCCcEEEEECCCCceEEEEEe-----cccCCcEE
Q 001042 1035 RGTCDAVLACHA---GPVQCVEYSSSDRGI------------ITGSSDGLLRFWENDDGGIKCVKNV-----TIHSSAIL 1094 (1178)
Q Consensus 1035 ~~~~~~~~~~h~---~~I~~l~~spdg~~L------------~sgs~Dg~I~iwd~~~~~~~~~~~~-----~~h~~~i~ 1094 (1178)
+|++++++.+|. ..+.+++|+|+|.++ ++|+.|++|++||..++ ..+..+ .+|.....
T Consensus 212 TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tg--k~l~v~~~~~p~Gh~~~~l 289 (356)
T 2w18_A 212 TGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTT--LSVGVMLYCLPPGQAGRFL 289 (356)
T ss_dssp TCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTT--EEEEEEEECCCTTCCCCEE
T ss_pred CCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCC--EEEEEEEeeccCCCcceeE
Confidence 999999998654 367788999999886 56888999999999998 443333 47777776
Q ss_pred EEecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEE-EEEEcCCCCEEEEEeCCCcEEEEE
Q 001042 1095 SINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVR-CIASDLERKRICSGGRNGLLRLWE 1173 (1178)
Q Consensus 1095 ~is~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~-~lafspdg~~Las~s~Dg~V~IWd 1173 (1178)
+.+.++.++|+|+.|++|+|||+.++ +++.++.+|...+. +++|||||++|+||+.|++|+|||
T Consensus 290 sg~~sg~~lASgS~DgTIkIWDl~tG---------------k~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd 354 (356)
T 2w18_A 290 EGDVKDHCAAAILTSGTIAIWDLLLG---------------QCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYH 354 (356)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTC---------------SEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred ccccCCCEEEEEcCCCcEEEEECCCC---------------cEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEec
Confidence 66777899999999999999999844 66777888877655 689999999999999999999999
Q ss_pred CC
Q 001042 1174 AT 1175 (1178)
Q Consensus 1174 v~ 1175 (1178)
+.
T Consensus 355 ~~ 356 (356)
T 2w18_A 355 YS 356 (356)
T ss_dssp EC
T ss_pred CC
Confidence 63
No 128
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.93 E-value=6.6e-24 Score=281.56 Aligned_cols=360 Identities=10% Similarity=0.072 Sum_probs=269.3
Q ss_pred CCCCCcccccCCcceEEEEecCCCCccccccc------c--eeecccccccCCCCCCCCCCCcCCcccccceEEeccccc
Q 001042 757 DDQQPAEASGIGRSWVQSMFSREASSRSHSFS------R--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAG 828 (1178)
Q Consensus 757 ~~~~~~~~~gh~~~i~~~aFSpdg~~las~~~------d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~ 828 (1178)
.+++...+.+|...+.+++|||||++||+++. + |++|+++++. .+.+.+|.+
T Consensus 41 ~gg~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~--------------------~~~lt~~~~ 100 (1045)
T 1k32_A 41 KSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE--------------------IKRITYFSG 100 (1045)
T ss_dssp TTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE--------------------EEECCCCCE
T ss_pred CCCcEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC--------------------eEEcccCCC
Confidence 44566777889999999999999999997742 2 9999988654 456788888
Q ss_pred ce-------EEEEeeeccceeccccccCCCCEEEEEeCC------CcEEEEcCCCCCceee-------------------
Q 001042 829 AI-------TALHCVTKREVWDLVGDREDAGFFISGSTD------CLVKIWDPSLRGSELR------------------- 876 (1178)
Q Consensus 829 ~V-------~~l~fs~~~~~~~~~~~s~d~~~Lasgs~D------g~I~iWd~~~~~~~~~------------------- 876 (1178)
.+ .+++|+ |||+++++++.+ ..|.+|++. +....
T Consensus 101 ~~~~~~~~~~~~~~S------------pDg~ll~~~~~~~~~~~~~~l~~~~~~--~g~~~~l~~~~~~~~~~spG~l~~ 166 (1045)
T 1k32_A 101 KSTGRRMFTDVAGFD------------PDGNLIISTDAMQPFSSMTCLYRVEND--GINFVPLNLGPATHILFADGRRVI 166 (1045)
T ss_dssp EEETTEECSEEEEEC------------TTCCEEEEECTTSSSTTCCEEEEEEGG--GTEEEECCSCSCSEEEEETTEEEE
T ss_pred cccccccccccccCC------------CCCEEEEEECCcCCCcccceEEEEECC--CCCeEEecCCCcceeeeCCCEEEE
Confidence 88 889987 889977777754 346777654 22111
Q ss_pred ------------------------------EeecccccceEE--EecCCCEEEEEeCCCcEEEEECCC-CcEEEEecCCC
Q 001042 877 ------------------------------ATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQT-SQLLEELKGHD 923 (1178)
Q Consensus 877 ------------------------------~~l~~h~~~V~~--~s~d~~~l~sgs~dg~I~iwd~~t-~~~~~~l~~h~ 923 (1178)
..+.+|...+.+ |+++ ..+++++.|+.+.+|.+.. +.....+..|.
T Consensus 167 ~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~ 245 (1045)
T 1k32_A 167 GRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT 245 (1045)
T ss_dssp EESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC
T ss_pred eccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC
Confidence 112334444443 3444 4556777888899998653 44455666555
Q ss_pred CceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecC-----------CCCCEEEEEEe-CCCCEEEEEeCCCeEEE
Q 001042 924 AQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGR-----------CSSAVLCMEYD-DSTGILAAGGRDAVANI 990 (1178)
Q Consensus 924 ~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~-----------~~~~I~~l~~s-p~~~~l~sgs~dg~I~l 990 (1178)
.+...+|+ ++..++.+ .++.|.+||+..... ..+.. +...+.+++|+ |+|+.+++++ ++.+.+
T Consensus 246 -~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~l-~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~ 321 (1045)
T 1k32_A 246 -DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKI-EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFI 321 (1045)
T ss_dssp -SSCEEEEEESSSCEEEE-ETTEEEEECTTTCCE-EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEE
T ss_pred -CcceeeEcCCCCEEEEE-eCCEEEEecCCceEe-eeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEE
Confidence 35667888 67777776 589999999955443 35544 23368899999 9999999887 789999
Q ss_pred EECCCCceEEEEecCCc-cEEEEEEc-CCEEEEEeCCCcEE-EEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCC
Q 001042 991 WDIRAGRQMHKFLGHTK-WIRSIRMD-RDTVITGSDDWTAR-MWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSD 1067 (1178)
Q Consensus 991 wD~~~~~~~~~~~~~~~-~v~~l~~~-~~~l~sgs~dg~I~-iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~D 1067 (1178)
|+..+++... +..+.. .+..++|+ ++.+++++.++.+. +||+.+++.. .+.+|...+..++|+|||++|++++.+
T Consensus 322 ~~~~~~~~~~-~~~~~~~~~~~~~~sdg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~ 399 (1045)
T 1k32_A 322 QDVSGTYVLK-VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDR 399 (1045)
T ss_dssp ECTTSSBEEE-CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETT
T ss_pred EcCCCCceEE-ccCCCcceEEeeeEcCCCeEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCC
Confidence 9998876543 556666 88888886 33788888888888 9998877654 344788899999999999999999999
Q ss_pred CcEEEEECCCCceEEEEEecccCCcE--EEEecCCCEEEEEeCCC----------cEEEEEcCCCccccccCCCCCccce
Q 001042 1068 GLLRFWENDDGGIKCVKNVTIHSSAI--LSINAGDHWLGIGAADN----------SMSLFHRPQERLGGFSGTGSKMSGW 1135 (1178)
Q Consensus 1068 g~I~iwd~~~~~~~~~~~~~~h~~~i--~~is~dg~~Lasgs~Dg----------~I~iwd~~~~~~~~~~~~g~~~~~~ 1135 (1178)
+.|++||+.+++ ......+|...+ .+++|||++|++++.++ .|++||+.++
T Consensus 400 ~~v~~~d~~tg~--~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g--------------- 462 (1045)
T 1k32_A 400 FEIMTVDLETGK--PTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR--------------- 462 (1045)
T ss_dssp SEEEEEETTTCC--EEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT---------------
T ss_pred CeEEEEECCCCc--eEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCC---------------
Confidence 999999999984 334444666654 56699999999887654 8999999743
Q ss_pred eEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001042 1136 QLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEAT 1175 (1178)
Q Consensus 1136 ~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~ 1175 (1178)
+ ...+..|...+.+++|+|||++|++++.++..++|+..
T Consensus 463 ~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 463 K-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp E-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred c-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchh
Confidence 2 34455677788999999999999999999988888754
No 129
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.93 E-value=1.1e-23 Score=279.60 Aligned_cols=399 Identities=13% Similarity=0.105 Sum_probs=284.1
Q ss_pred CCCCCcccccCCcce-------EEEEecCCCCcccccccc--------eeecccccccCCCCCCCCCCC-----------
Q 001042 757 DDQQPAEASGIGRSW-------VQSMFSREASSRSHSFSR--------VRKWTSDAANENGTPRKQDST----------- 810 (1178)
Q Consensus 757 ~~~~~~~~~gh~~~i-------~~~aFSpdg~~las~~~d--------I~vWd~~~~~~~~~~~~~~~~----------- 810 (1178)
++++...+.+|...+ ..++|||||+.+++++.+ |.+|+++++............
T Consensus 88 ~~g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~ 167 (1045)
T 1k32_A 88 ENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIG 167 (1045)
T ss_dssp TTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEE
T ss_pred CCCCeEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEe
Confidence 345556667777777 788999999977776632 777787765421111000000
Q ss_pred ------------cCC-------cccccceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCC
Q 001042 811 ------------AGG-------KKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLR 871 (1178)
Q Consensus 811 ------------~~~-------~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~ 871 (1178)
.+. .........+.+|.+.+.+++|+ ++ .++++++.||+++||.++..
T Consensus 168 ~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s------------~d-~l~~~~~~dg~~~l~~~~~~ 234 (1045)
T 1k32_A 168 RNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIV------------GH-RIYFITDIDGFGQIYSTDLD 234 (1045)
T ss_dssp ESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEE------------TT-EEEEEECTTSSCEEEEEETT
T ss_pred ccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEe------------CC-EEEEEEeccCceEEEEEeCC
Confidence 000 00012344568899999999997 56 67778888999999987633
Q ss_pred CceeeEeeccccc-ceEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEecC-----------CCCceEEEEEe-C-CCeE
Q 001042 872 GSELRATLKGHTR-TVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKG-----------HDAQVSCVRML-S-GERV 937 (1178)
Q Consensus 872 ~~~~~~~l~~h~~-~V~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~-----------h~~~V~~l~~~-~-~~~l 937 (1178)
+... ..+..|.. ...+++|||+.++++. ++.|.+||+...+. ..+.+ |...+.+++|+ + +..+
T Consensus 235 g~~~-~~l~~~~~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~l-~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~l 311 (1045)
T 1k32_A 235 GKDL-RKHTSFTDYYPRHLNTDGRRILFSK-GGSIYIFNPDTEKI-EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLI 311 (1045)
T ss_dssp SCSC-EECCCCCSSCEEEEEESSSCEEEEE-TTEEEEECTTTCCE-EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCE
T ss_pred CCcc-eEecCCCCcceeeEcCCCCEEEEEe-CCEEEEecCCceEe-eeeccCcccccccccccccccceeeecCCCCCEE
Confidence 3333 44444443 3558899999998884 89999999955444 35554 34478999998 5 5567
Q ss_pred EEEeCCCeEEEEeCCCCeEEEEecCCCC-CEEEEEEeCCCCEEEEEeCCCeEE-EEECCCCceEEEEecCCccEEEEEEc
Q 001042 938 LTASHDGTVKMWDVRTDTCVATVGRCSS-AVLCMEYDDSTGILAAGGRDAVAN-IWDIRAGRQMHKFLGHTKWIRSIRMD 1015 (1178)
Q Consensus 938 ~sgs~dg~V~iwd~~~~~~~~~~~~~~~-~I~~l~~sp~~~~l~sgs~dg~I~-lwD~~~~~~~~~~~~~~~~v~~l~~~ 1015 (1178)
++++ ++.+.+|+..+++... +..+.. .+..++|+ +|+.++.++.++.+. +||..+++... +.+|...+.+++|+
T Consensus 312 a~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~S 387 (1045)
T 1k32_A 312 AFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVD 387 (1045)
T ss_dssp EEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEEC
T ss_pred EEEE-cCEEEEEcCCCCceEE-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEEC
Confidence 7766 8899999998887554 556666 89999999 999999999888899 99998776543 44777889999995
Q ss_pred --CCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCC----------cEEEEECCCCceEEE
Q 001042 1016 --RDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDG----------LLRFWENDDGGIKCV 1083 (1178)
Q Consensus 1016 --~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg----------~I~iwd~~~~~~~~~ 1083 (1178)
++.+++++.++.|++||+.+++......+|.+.+.+++|+|||++|++++.++ .|++||+.++ . .
T Consensus 388 pDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g--~-~ 464 (1045)
T 1k32_A 388 RNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR--K-I 464 (1045)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT--E-E
T ss_pred CCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCC--c-E
Confidence 55899999999999999999988888878999999999999999999887654 8999999987 3 4
Q ss_pred EEecccCCcEEE--EecCCCEEEEEeCCCcEEEEEcCCCcccc----------ccCCCCCc------------cce----
Q 001042 1084 KNVTIHSSAILS--INAGDHWLGIGAADNSMSLFHRPQERLGG----------FSGTGSKM------------SGW---- 1135 (1178)
Q Consensus 1084 ~~~~~h~~~i~~--is~dg~~Lasgs~Dg~I~iwd~~~~~~~~----------~~~~g~~~------------~~~---- 1135 (1178)
..+..|...+.+ ++|||++|++++.++...+|+........ +...+... ..|
T Consensus 465 ~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 544 (1045)
T 1k32_A 465 FAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLND 544 (1045)
T ss_dssp EECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTT
T ss_pred EEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccC
Confidence 556667666544 58999999999998888888764322100 00000000 000
Q ss_pred --eEeeccCCCcccEEEEEEcCCCCEEEE-------------EeCCCcEEEEECCCCC
Q 001042 1136 --QLYRTPQKTVAVVRCIASDLERKRICS-------------GGRNGLLRLWEATINI 1178 (1178)
Q Consensus 1136 --~~~~~~~~h~~~V~~lafspdg~~Las-------------~s~Dg~V~IWdv~tg~ 1178 (1178)
.....+..|.+.+..++++|||+++++ .+.++.|.+||+.+++
T Consensus 545 ~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~ 602 (1045)
T 1k32_A 545 MYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK 602 (1045)
T ss_dssp GGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC
T ss_pred HhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCc
Confidence 112234457788999999999998885 1235578888888763
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.92 E-value=5.2e-23 Score=251.95 Aligned_cols=315 Identities=10% Similarity=0.059 Sum_probs=242.3
Q ss_pred cCCCCEEEEEeCCCcEEEEcCCCCCceeeEeec-ccccceEEEecCCCEEEEEeCCCcEEEEEC--CCCcEEEEecCCCC
Q 001042 848 REDAGFFISGSTDCLVKIWDPSLRGSELRATLK-GHTRTVRAINSDRGKVVSGSDDQSVLVWDK--QTSQLLEELKGHDA 924 (1178)
Q Consensus 848 s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~-~h~~~V~~~s~d~~~l~sgs~dg~I~iwd~--~t~~~~~~l~~h~~ 924 (1178)
++++.++++++.|++|.+||.. ..++...+. ++.....+++|||+++++++.|++|.+||+ .+++.+.++. +..
T Consensus 146 ~p~~~~~vs~~~d~~V~v~D~~--t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~ 222 (543)
T 1nir_A 146 DLPNLFSVTLRDAGQIALVDGD--SKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGI 222 (543)
T ss_dssp CGGGEEEEEEGGGTEEEEEETT--TCCEEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCS
T ss_pred CCCCEEEEEEcCCCeEEEEECC--CceEEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCC
Confidence 3788999999999999999976 455566666 454333457999999999999999999999 8899988888 456
Q ss_pred ceEEEEEeC-----CCeEEEEe-CCCeEEEEeCCCCeEEEEecCC-----------CCCEEEEEEeCCCCE-EEEEeCCC
Q 001042 925 QVSCVRMLS-----GERVLTAS-HDGTVKMWDVRTDTCVATVGRC-----------SSAVLCMEYDDSTGI-LAAGGRDA 986 (1178)
Q Consensus 925 ~V~~l~~~~-----~~~l~sgs-~dg~V~iwd~~~~~~~~~~~~~-----------~~~I~~l~~sp~~~~-l~sgs~dg 986 (1178)
.+..++|++ ++++++++ .+++|.+||..+++++..+..+ ...+.++.+++++.. +++...+|
T Consensus 223 ~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g 302 (543)
T 1nir_A 223 EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETG 302 (543)
T ss_dssp EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred CcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCC
Confidence 679999984 77888887 4899999999999998887542 237899999997665 55666789
Q ss_pred eEEEEECCCCceEE--EEecCCccEEEEEEcC--CEEEE-EeCCCcEEEEEcCCCeeeeEecc----CCCcEEEEEEecC
Q 001042 987 VANIWDIRAGRQMH--KFLGHTKWIRSIRMDR--DTVIT-GSDDWTARMWSISRGTCDAVLAC----HAGPVQCVEYSSS 1057 (1178)
Q Consensus 987 ~I~lwD~~~~~~~~--~~~~~~~~v~~l~~~~--~~l~s-gs~dg~I~iwd~~~~~~~~~~~~----h~~~I~~l~~spd 1057 (1178)
.|.+||..+++.+. .+ .+...+.+++|++ +++++ +..+++|.+||..+++++..+.. |.+....+ ++|+
T Consensus 303 ~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~ 380 (543)
T 1nir_A 303 KVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPK 380 (543)
T ss_dssp EEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETT
T ss_pred eEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCC
Confidence 99999998876544 33 3556677888854 45554 45689999999999999888774 55444333 4777
Q ss_pred -CCEEEEEe-CCCcEEEEECCCCc-----eEEEEEecccCCcE--EEEecCCCEEEEEe-------CCCcEEEEEcCCCc
Q 001042 1058 -DRGIITGS-SDGLLRFWENDDGG-----IKCVKNVTIHSSAI--LSINAGDHWLGIGA-------ADNSMSLFHRPQER 1121 (1178)
Q Consensus 1058 -g~~L~sgs-~Dg~I~iwd~~~~~-----~~~~~~~~~h~~~i--~~is~dg~~Lasgs-------~Dg~I~iwd~~~~~ 1121 (1178)
|..+++++ .|++|.+||+.+.+ .+++.++.+|...+ ..++|+|++|++++ .+++|.+||+.+.+
T Consensus 381 ~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~ 460 (543)
T 1nir_A 381 YGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD 460 (543)
T ss_dssp TEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred CccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCC
Confidence 56666665 58999999998821 47888898887665 44589999999987 27799999998553
Q ss_pred cccccCCCCCccceeEe-----eccCCCcccEEEEEEcCCCCEEEEEe-----CCCcEEEEECCCCC
Q 001042 1122 LGGFSGTGSKMSGWQLY-----RTPQKTVAVVRCIASDLERKRICSGG-----RNGLLRLWEATINI 1178 (1178)
Q Consensus 1122 ~~~~~~~g~~~~~~~~~-----~~~~~h~~~V~~lafspdg~~Las~s-----~Dg~V~IWdv~tg~ 1178 (1178)
. . .+.+ ..+..+...+..++|+|||+.|+.+. .|+.|.|||.+|++
T Consensus 461 ~---------~--~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~ 516 (543)
T 1nir_A 461 A---------K--YQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLK 516 (543)
T ss_dssp S---------C--CEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred C---------C--eEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCce
Confidence 1 1 0111 01235567899999999999988763 47999999999874
No 131
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.92 E-value=4.4e-23 Score=252.60 Aligned_cols=311 Identities=8% Similarity=0.045 Sum_probs=241.0
Q ss_pred EecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEec-ccccceEEEEeeeccceeccccccCCC
Q 001042 775 MFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIR-GHAGAITALHCVTKREVWDLVGDREDA 851 (1178)
Q Consensus 775 aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-gH~~~V~~l~fs~~~~~~~~~~~s~d~ 851 (1178)
+|+|+|..+++++.+ |.+||..+++ ++.++. +|. +.+++|+ |||
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~-------------------~~~~i~~g~~--~~~v~~s------------pdg 190 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKK-------------------IVKVIDTGYA--VHISRMS------------ASG 190 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCC-------------------EEEEEECSTT--EEEEEEC------------TTS
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCce-------------------EEEEEecCcc--cceEEEC------------CCC
Confidence 589999988888877 9999999877 677777 444 8888887 999
Q ss_pred CEEEEEeCCCcEEEEcCCCCCceeeEeecccccce-EEEec----CCCEEEEEeC-CCcEEEEECCCCcEEEEecCC---
Q 001042 852 GFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTV-RAINS----DRGKVVSGSD-DQSVLVWDKQTSQLLEELKGH--- 922 (1178)
Q Consensus 852 ~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V-~~~s~----d~~~l~sgs~-dg~I~iwd~~t~~~~~~l~~h--- 922 (1178)
++|++++.|++|++||+.....+....+..+..+. .+++| ||+++++++. +++|.+||..+++++..+..+
T Consensus 191 ~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~ 270 (543)
T 1nir_A 191 RYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT 270 (543)
T ss_dssp CEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEEC
T ss_pred CEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcc
Confidence 99999999999999998312455556665443332 25799 9999999884 899999999999999888653
Q ss_pred --------CCceEEEEEe-CCC-eEEEEeCCCeEEEEeCCCCeEEE--EecCCCCCEEEEEEeCCCCEEEEEe-CCCeEE
Q 001042 923 --------DAQVSCVRML-SGE-RVLTASHDGTVKMWDVRTDTCVA--TVGRCSSAVLCMEYDDSTGILAAGG-RDAVAN 989 (1178)
Q Consensus 923 --------~~~V~~l~~~-~~~-~l~sgs~dg~V~iwd~~~~~~~~--~~~~~~~~I~~l~~sp~~~~l~sgs-~dg~I~ 989 (1178)
...+..+.++ ++. .+++...+|+|.+||..+++.+. .+ .+...+.+++|+|+|+++++++ .+++|.
T Consensus 271 ~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~ 349 (543)
T 1nir_A 271 VDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVA 349 (543)
T ss_dssp SSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEE
T ss_pred cCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEE
Confidence 2368889998 344 56677789999999998865433 44 3456688899999999877655 588999
Q ss_pred EEECCCCceEEEEec----CCccEEEEEE-c-CCEEEEEe-CCCcEEEEEcCC-------CeeeeEeccCCCcEEEEEEe
Q 001042 990 IWDIRAGRQMHKFLG----HTKWIRSIRM-D-RDTVITGS-DDWTARMWSISR-------GTCDAVLACHAGPVQCVEYS 1055 (1178)
Q Consensus 990 lwD~~~~~~~~~~~~----~~~~v~~l~~-~-~~~l~sgs-~dg~I~iwd~~~-------~~~~~~~~~h~~~I~~l~~s 1055 (1178)
+||..+++.+..+.. |.+....+.. + +..++++. .|++|.+||+.+ +++++++..|.+.+..++++
T Consensus 350 v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~ 429 (543)
T 1nir_A 350 VIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTH 429 (543)
T ss_dssp EEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECC
T ss_pred EEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcC
Confidence 999999999888764 5443333322 2 33566665 689999999988 88999999999889999999
Q ss_pred cCCCEEEEEe-------CCCcEEEEECCCCceEEEEEe--------cccCCcEEEE--ecCCCEEEEEe-----CCCcEE
Q 001042 1056 SSDRGIITGS-------SDGLLRFWENDDGGIKCVKNV--------TIHSSAILSI--NAGDHWLGIGA-----ADNSMS 1113 (1178)
Q Consensus 1056 pdg~~L~sgs-------~Dg~I~iwd~~~~~~~~~~~~--------~~h~~~i~~i--s~dg~~Lasgs-----~Dg~I~ 1113 (1178)
|+|++|++++ .+++|.+||+.+++.. ...+ ..+...+..+ +++|+.++++. .|+.|.
T Consensus 430 pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~ 508 (543)
T 1nir_A 430 PKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK-YQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALV 508 (543)
T ss_dssp TTCCEEEECCTTCSSHHHHTCEEEEETTCTTSC-CEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEE
T ss_pred CCCCcEEEecCCCCCcccCceEEEEECCCCCCC-eEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEE
Confidence 9999999987 2779999999988533 1222 2345566554 89999998763 479999
Q ss_pred EEEcCCC
Q 001042 1114 LFHRPQE 1120 (1178)
Q Consensus 1114 iwd~~~~ 1120 (1178)
|||..++
T Consensus 509 v~D~~t~ 515 (543)
T 1nir_A 509 VVDDKTL 515 (543)
T ss_dssp EEETTTT
T ss_pred EEECCCc
Confidence 9999855
No 132
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.90 E-value=3.8e-22 Score=236.62 Aligned_cols=287 Identities=11% Similarity=0.036 Sum_probs=219.0
Q ss_pred CCC-CEEEEEe----CCC----cEEEEcC--CCCCceeeEeecccccceEEE--ec--------------CCCEEEEEeC
Q 001042 849 EDA-GFFISGS----TDC----LVKIWDP--SLRGSELRATLKGHTRTVRAI--NS--------------DRGKVVSGSD 901 (1178)
Q Consensus 849 ~d~-~~Lasgs----~Dg----~I~iWd~--~~~~~~~~~~l~~h~~~V~~~--s~--------------d~~~l~sgs~ 901 (1178)
+.| .++++|+ .|| +|++||+ ..........+.+|...+..+ ++ .+..++.++.
T Consensus 72 ~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~ 151 (415)
T 2hqs_A 72 ALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQ 151 (415)
T ss_dssp TTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEE
T ss_pred hcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEe
Confidence 444 5677886 467 8999998 633322235688888776643 21 2667777665
Q ss_pred C------CcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCC---eEEEEeCCCCeEEEEecCCCCCEEEEE
Q 001042 902 D------QSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDG---TVKMWDVRTDTCVATVGRCSSAVLCME 971 (1178)
Q Consensus 902 d------g~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg---~V~iwd~~~~~~~~~~~~~~~~I~~l~ 971 (1178)
+ +.|++||+.. .....+.+|...+.+++|+ +++.+++++.++ .|++||+.+++... +..+...+.+++
T Consensus 152 ~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~-l~~~~~~~~~~~ 229 (415)
T 2hqs_A 152 TNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPA 229 (415)
T ss_dssp CSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-EECCSSCEEEEE
T ss_pred cCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE-eecCCCcccCEE
Confidence 4 7999999974 4567778899999999999 788899999875 99999999998764 556778899999
Q ss_pred EeCCCCEEE-EEeCCC--eEEEEECCCCceEEEEecCCccEEEEEEc--CCEEEEEeC-CC--cEEEEEcCCCeeeeEec
Q 001042 972 YDDSTGILA-AGGRDA--VANIWDIRAGRQMHKFLGHTKWIRSIRMD--RDTVITGSD-DW--TARMWSISRGTCDAVLA 1043 (1178)
Q Consensus 972 ~sp~~~~l~-sgs~dg--~I~lwD~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sgs~-dg--~I~iwd~~~~~~~~~~~ 1043 (1178)
|+|+|+.|+ +++.+| .|++||+.+++. ..+..|...+.+++|+ ++.|++++. ++ .|++||+.+++. ..+.
T Consensus 230 ~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~ 307 (415)
T 2hqs_A 230 FSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRIT 307 (415)
T ss_dssp ECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECC
T ss_pred EcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEe
Confidence 999999888 555555 499999998876 5667788899999995 457887775 45 678889887764 4555
Q ss_pred cCCCcEEEEEEecCCCEEEEEeCC---CcEEEEECCCCceEEEEEecccC-CcEEEEecCCCEEEEEeCCC---cEEEEE
Q 001042 1044 CHAGPVQCVEYSSSDRGIITGSSD---GLLRFWENDDGGIKCVKNVTIHS-SAILSINAGDHWLGIGAADN---SMSLFH 1116 (1178)
Q Consensus 1044 ~h~~~I~~l~~spdg~~L~sgs~D---g~I~iwd~~~~~~~~~~~~~~h~-~~i~~is~dg~~Lasgs~Dg---~I~iwd 1116 (1178)
.+...+.+++|+|+|++|++++.+ +.|.+||+.+++. ..+..+. ....+++|+|++|++++.++ .|++||
T Consensus 308 ~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~---~~l~~~~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d 384 (415)
T 2hqs_A 308 WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV---QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVS 384 (415)
T ss_dssp CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE---EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred cCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE---EEecCCCCcCCeEEcCCCCEEEEEEcCCCccEEEEEE
Confidence 677789999999999999988764 5899999998853 2333343 23345689999999988877 799999
Q ss_pred cCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCC
Q 001042 1117 RPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERK 1158 (1178)
Q Consensus 1117 ~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~ 1158 (1178)
+.. .....+.+|.+.|++++|+|...
T Consensus 385 ~~g----------------~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 385 TDG----------------RFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp TTS----------------CCEEECCCSSSEEEEEEECCCCC
T ss_pred CCC----------------CcEEEeeCCCCCCcCCccccccc
Confidence 863 23445678889999999999754
No 133
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.89 E-value=3.6e-21 Score=245.96 Aligned_cols=317 Identities=8% Similarity=0.063 Sum_probs=235.2
Q ss_pred ccceEEEEeeeccceeccccccCCCCEEEEEeC-CC-----cEEEEcCCCCCceeeEeecccccc---------------
Q 001042 827 AGAITALHCVTKREVWDLVGDREDAGFFISGST-DC-----LVKIWDPSLRGSELRATLKGHTRT--------------- 885 (1178)
Q Consensus 827 ~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~-Dg-----~I~iWd~~~~~~~~~~~l~~h~~~--------------- 885 (1178)
...|.+++|| |||++|++++. || +|++||+.. .+....+..+...
T Consensus 36 ~~~~~~~~~S------------pdG~~la~~~~~d~~~~~~~i~~~d~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (741)
T 2ecf_A 36 GPTLMKPKVA------------PDGSRVTFLRGKDSDRNQLDLWSYDIGS--GQTRLLVDSKVVLPGTETLSDEEKARRE 101 (741)
T ss_dssp CCCCEEEEEC------------TTSSEEEEEECCSSCTTEEEEEEEETTT--CCEEEEECGGGTC---------------
T ss_pred CCCCCCceEe------------cCCCEEEEEeccCCCCcccEEEEEECCC--CceeEccchhhcccccccccchhhhhhh
Confidence 4568999998 99999999998 88 899999873 3333444433221
Q ss_pred ---------e--EEEecCCCEEEEEeCCCcEEEEECCCCc--EEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeC
Q 001042 886 ---------V--RAINSDRGKVVSGSDDQSVLVWDKQTSQ--LLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDV 951 (1178)
Q Consensus 886 ---------V--~~~s~d~~~l~sgs~dg~I~iwd~~t~~--~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~ 951 (1178)
+ .+|+|||++|++++. +.|++||+.+++ ....+..|...+.+++|+ +++.++.++ ++.|++||+
T Consensus 102 ~~~~~~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~ 179 (741)
T 2ecf_A 102 RQRIAAMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDL 179 (741)
T ss_dssp -----CCEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEET
T ss_pred hhhhccccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEec
Confidence 3 368999999999987 999999999883 345677788899999999 677777776 569999999
Q ss_pred CCCeEEEEecCCCCC----------------EEEEEEeCCCCEEEEEeCCC-----------------------------
Q 001042 952 RTDTCVATVGRCSSA----------------VLCMEYDDSTGILAAGGRDA----------------------------- 986 (1178)
Q Consensus 952 ~~~~~~~~~~~~~~~----------------I~~l~~sp~~~~l~sgs~dg----------------------------- 986 (1178)
.+++.......+... +.+++|+|||+.|++++.|+
T Consensus 180 ~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~ 259 (741)
T 2ecf_A 180 ASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDA 259 (741)
T ss_dssp TTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSC
T ss_pred CCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCC
Confidence 998876654443332 47799999999999988765
Q ss_pred ----eEEEEECCC-CceEEEEe--cCCccEEEEEE-cCCEEEEEeC-----CCcEEEEEcCCCeeeeEeccCCC----cE
Q 001042 987 ----VANIWDIRA-GRQMHKFL--GHTKWIRSIRM-DRDTVITGSD-----DWTARMWSISRGTCDAVLACHAG----PV 1049 (1178)
Q Consensus 987 ----~I~lwD~~~-~~~~~~~~--~~~~~v~~l~~-~~~~l~sgs~-----dg~I~iwd~~~~~~~~~~~~h~~----~I 1049 (1178)
.|++||+.+ ++...... .+...+.+++| +++.|++++. ++.|++||+.+++....+..+.. .+
T Consensus 260 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~ 339 (741)
T 2ecf_A 260 NVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNWRDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLH 339 (741)
T ss_dssp CCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEEEETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCC
T ss_pred CCeeEEEEEECCCCCceEEecCCCCcceEEEEEEeCCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcC
Confidence 899999998 87654433 36678888887 4447776653 56799999999988777765543 45
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEE---EEecCCCEEEE-EeCCC--cEEEEEcCCCccc
Q 001042 1050 QCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAIL---SINAGDHWLGI-GAADN--SMSLFHRPQERLG 1123 (1178)
Q Consensus 1050 ~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~---~is~dg~~Las-gs~Dg--~I~iwd~~~~~~~ 1123 (1178)
.+++|+|||+++++++.||.+++|.++... . ...+..|...+. .++++|+.++. ++.++ .++||++...
T Consensus 340 ~~~~~spdg~~~~~~~~~g~~~l~~~~~~~-~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~--- 414 (741)
T 2ecf_A 340 NSLRFLDDGSILWSSERTGFQHLYRIDSKG-K-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQ--- 414 (741)
T ss_dssp SCCEECTTSCEEEEECTTSSCEEEEECSSS-C-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETT---
T ss_pred CceEECCCCeEEEEecCCCccEEEEEcCCC-C-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcC---
Confidence 689999999999999999988898876322 2 566666766664 46899987765 44455 8999998621
Q ss_pred cccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCC----CcEEEEECCC
Q 001042 1124 GFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRN----GLLRLWEATI 1176 (1178)
Q Consensus 1124 ~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~D----g~V~IWdv~t 1176 (1178)
|. ....+.. ...+.+++|||||++|+....+ +.+.+|+..+
T Consensus 415 -----g~------~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~ 459 (741)
T 2ecf_A 415 -----GG------QPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANG 459 (741)
T ss_dssp -----CC------CCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTS
T ss_pred -----CC------Ceeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCC
Confidence 21 1122222 4557899999999998876543 4688888754
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.88 E-value=8.8e-21 Score=242.33 Aligned_cols=316 Identities=9% Similarity=0.034 Sum_probs=230.9
Q ss_pred CcceEEEEecCCCCccccccc--------ceeecccccccCCCCCCCCCCCcCCcccccceEEecccc------------
Q 001042 768 GRSWVQSMFSREASSRSHSFS--------RVRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHA------------ 827 (1178)
Q Consensus 768 ~~~i~~~aFSpdg~~las~~~--------dI~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~------------ 827 (1178)
...+..++|||||+++++++. .|++||+++++ ....+.+|.
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~-------------------~~~~~~~~~~~~~~~~~~~~~ 96 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQ-------------------TRLLVDSKVVLPGTETLSDEE 96 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCC-------------------EEEEECGGGTC----------
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCc-------------------eeEccchhhcccccccccchh
Confidence 457889999999999998875 39999998876 233333332
Q ss_pred ------------cceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceE--EEecCC
Q 001042 828 ------------GAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDR 893 (1178)
Q Consensus 828 ------------~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~--~~s~d~ 893 (1178)
..|.+++|| |||++|++++. +.|++||+..........+..|...+. +|+|||
T Consensus 97 ~~~~~~~~~~~~~~v~~~~~S------------pDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG 163 (741)
T 2ecf_A 97 KARRERQRIAAMTGIVDYQWS------------PDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKG 163 (741)
T ss_dssp ----------CCEESCCCEEC------------TTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTS
T ss_pred hhhhhhhhhccccCcceeEEC------------CCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCC
Confidence 236777776 99999999986 899999987321002345666666666 579999
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEecCCCCc----------------eEEEEEe-CCCeEEEEeCCC------------
Q 001042 894 GKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQ----------------VSCVRML-SGERVLTASHDG------------ 944 (1178)
Q Consensus 894 ~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~----------------V~~l~~~-~~~~l~sgs~dg------------ 944 (1178)
++|++++. +.|++||+.+++.......+... +..++|+ +++.|++++.|+
T Consensus 164 ~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~ 242 (741)
T 2ecf_A 164 GFVSFIRG-RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVY 242 (741)
T ss_dssp SEEEEEET-TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEEC
T ss_pred CEEEEEeC-CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCC
Confidence 99999885 68999999998776555444432 4779999 788888887765
Q ss_pred ---------------------eEEEEeCCC-CeEEEEec--CCCCCEEEEEEeCCCCEEEEEeC-----CCeEEEEECCC
Q 001042 945 ---------------------TVKMWDVRT-DTCVATVG--RCSSAVLCMEYDDSTGILAAGGR-----DAVANIWDIRA 995 (1178)
Q Consensus 945 ---------------------~V~iwd~~~-~~~~~~~~--~~~~~I~~l~~sp~~~~l~sgs~-----dg~I~lwD~~~ 995 (1178)
.|.+||+.+ ++...... .+...+..++| |||+.|++++. ++.|++||+.+
T Consensus 243 p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~ 321 (741)
T 2ecf_A 243 ADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLAS 321 (741)
T ss_dssp SSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTT
T ss_pred CCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCC
Confidence 899999998 87655433 36678999999 99999987764 56899999999
Q ss_pred CceEEEEecCCc----cEEEEEE--cCCEEEEEeCCCcEEEEEcC-CCeeeeEeccCCCcEEEE-EEecCCCEEEEE-eC
Q 001042 996 GRQMHKFLGHTK----WIRSIRM--DRDTVITGSDDWTARMWSIS-RGTCDAVLACHAGPVQCV-EYSSSDRGIITG-SS 1066 (1178)
Q Consensus 996 ~~~~~~~~~~~~----~v~~l~~--~~~~l~sgs~dg~I~iwd~~-~~~~~~~~~~h~~~I~~l-~~spdg~~L~sg-s~ 1066 (1178)
++....+..+.. .+.+++| +++.+++++.||.+++|.+. ++. ...+..|...+..+ .|+|+|+.|+.. +.
T Consensus 322 g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~ 400 (741)
T 2ecf_A 322 NQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGI 400 (741)
T ss_dssp CCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECS
T ss_pred CceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeC
Confidence 988776665543 3456777 45588888999988888775 345 77787888888887 599999987654 44
Q ss_pred CC--cEEEEECCCCceEEEEEecccCCcE--EEEecCCCEEEEEeCC----CcEEEEEcCCC
Q 001042 1067 DG--LLRFWENDDGGIKCVKNVTIHSSAI--LSINAGDHWLGIGAAD----NSMSLFHRPQE 1120 (1178)
Q Consensus 1067 Dg--~I~iwd~~~~~~~~~~~~~~h~~~i--~~is~dg~~Lasgs~D----g~I~iwd~~~~ 1120 (1178)
++ .+++|++.... .....+.. ...+ .+++|||++++....+ ..+.+|+...+
T Consensus 401 ~~~~~~~l~~~~~~g-~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 401 ESARESQIYAVPLQG-GQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp SCTTCBEEEEEETTC-CCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred CCCceEEEEEEEcCC-CCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 55 89999986421 22233333 3333 4568999998876544 46889987654
No 135
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.88 E-value=1.1e-20 Score=224.11 Aligned_cols=266 Identities=10% Similarity=0.065 Sum_probs=205.9
Q ss_pred EecCC-CEEEEEe----CCC----cEEEEEC--CCCcEE--EEecCCCCceEEEEEeC---------------CCeEEEE
Q 001042 889 INSDR-GKVVSGS----DDQ----SVLVWDK--QTSQLL--EELKGHDAQVSCVRMLS---------------GERVLTA 940 (1178)
Q Consensus 889 ~s~d~-~~l~sgs----~dg----~I~iwd~--~t~~~~--~~l~~h~~~V~~l~~~~---------------~~~l~sg 940 (1178)
|.+.| +.+++|+ .|| ++++||+ .+++.+ ..+.+|...+..+++.. +..++.+
T Consensus 70 w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~ 149 (415)
T 2hqs_A 70 WSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYV 149 (415)
T ss_dssp HHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEE
T ss_pred HHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEE
Confidence 45555 4565775 467 8999999 999887 45888888887776652 6677766
Q ss_pred eCC------CeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCC---eEEEEECCCCceEEEEecCCccEEE
Q 001042 941 SHD------GTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDA---VANIWDIRAGRQMHKFLGHTKWIRS 1011 (1178)
Q Consensus 941 s~d------g~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg---~I~lwD~~~~~~~~~~~~~~~~v~~ 1011 (1178)
+.+ ++|++||+..+ ....+..|...+.+++|+|+|+.+++++.++ .|++||+.+++.. .+..+...+.+
T Consensus 150 s~~~~~~~~~~i~i~d~~g~-~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~ 227 (415)
T 2hqs_A 150 VQTNGGQFPYELRVSDYDGY-NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGA 227 (415)
T ss_dssp EECSSSSCCEEEEEEETTSC-SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEE
T ss_pred EecCCCCccceEEEEcCCCC-CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccC
Confidence 654 79999999754 4566667888999999999999999999875 9999999998875 46678889999
Q ss_pred EEEcC--CEEE-EEeCCCc--EEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeC-CC--cEEEEECCCCceEEE
Q 001042 1012 IRMDR--DTVI-TGSDDWT--ARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSS-DG--LLRFWENDDGGIKCV 1083 (1178)
Q Consensus 1012 l~~~~--~~l~-sgs~dg~--I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~-Dg--~I~iwd~~~~~~~~~ 1083 (1178)
++|++ +.|+ +++.++. |++||+.+++. ..+..|...+.+++|+|||++|++++. ++ .|.+||+.+++.
T Consensus 228 ~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~--- 303 (415)
T 2hqs_A 228 PAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP--- 303 (415)
T ss_dssp EEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC---
T ss_pred EEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE---
Confidence 99965 4666 6666655 99999988876 567778889999999999999998886 44 677889888742
Q ss_pred EEecccCCcE--EEEecCCCEEEEEeCC---CcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCC
Q 001042 1084 KNVTIHSSAI--LSINAGDHWLGIGAAD---NSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERK 1158 (1178)
Q Consensus 1084 ~~~~~h~~~i--~~is~dg~~Lasgs~D---g~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~ 1158 (1178)
..+..+...+ .+++|+|++|++++.+ +.|++||+.+++ . ..+..|. .+.+++|+|||+
T Consensus 304 ~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~---------------~-~~l~~~~-~~~~~~~spdg~ 366 (415)
T 2hqs_A 304 QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG---------------V-QVLSSTF-LDETPSLAPNGT 366 (415)
T ss_dssp EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC---------------E-EECCCSS-SCEEEEECTTSS
T ss_pred EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC---------------E-EEecCCC-CcCCeEEcCCCC
Confidence 2334455555 4558999999988764 589999997432 2 1233343 789999999999
Q ss_pred EEEEEeCCC---cEEEEECCCC
Q 001042 1159 RICSGGRNG---LLRLWEATIN 1177 (1178)
Q Consensus 1159 ~Las~s~Dg---~V~IWdv~tg 1177 (1178)
+|++++.|+ .|.+||++++
T Consensus 367 ~l~~~s~~~~~~~l~~~d~~g~ 388 (415)
T 2hqs_A 367 MVIYSSSQGMGSVLNLVSTDGR 388 (415)
T ss_dssp EEEEEEEETTEEEEEEEETTSC
T ss_pred EEEEEEcCCCccEEEEEECCCC
Confidence 999998877 7999998764
No 136
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.87 E-value=5.6e-21 Score=243.38 Aligned_cols=344 Identities=8% Similarity=0.043 Sum_probs=235.2
Q ss_pred ceEEEEecCCCCcccccccc-eeecccccccCCCCCCCCCCCcCCcccccceEEeccccc---ceEEEEeeeccceeccc
Q 001042 770 SWVQSMFSREASSRSHSFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAG---AITALHCVTKREVWDLV 845 (1178)
Q Consensus 770 ~i~~~aFSpdg~~las~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~---~V~~l~fs~~~~~~~~~ 845 (1178)
....++|||||++++++.+. |++||+.+++ ....+.+|.. .|.+++||
T Consensus 18 ~~~~~~~spdg~~~~~~~dg~i~~~d~~~g~-------------------~~~~~~~~~~~~~~v~~~~~S--------- 69 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYREQKGTVRLWNVETNT-------------------STVLIEGKKIESLRAIRYEIS--------- 69 (723)
T ss_dssp CCCCCCBSSSSCBCCCCSSSCEEEBCGGGCC-------------------CEEEECTTTTTTTTCSEEEEC---------
T ss_pred cccccEEcCCCcEEEEeCCCCEEEEECCCCc-------------------EEEEeccccccccccceEEEC---------
Confidence 35667999999988774333 9999999887 5566777765 49999998
Q ss_pred cccCCCCEEEEEeCC---------CcEEEEcCCCCCceeeEeecccccceE--EEecCCCEEEEEeCCCcEEEEECCCCc
Q 001042 846 GDREDAGFFISGSTD---------CLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKVVSGSDDQSVLVWDKQTSQ 914 (1178)
Q Consensus 846 ~~s~d~~~Lasgs~D---------g~I~iWd~~~~~~~~~~~l~~h~~~V~--~~s~d~~~l~sgs~dg~I~iwd~~t~~ 914 (1178)
|||++|++++.+ +.|.+||+.......+....+|...+. +|||||+.|++++. +.|++||+.+++
T Consensus 70 ---pDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~ 145 (723)
T 1xfd_A 70 ---PDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQ 145 (723)
T ss_dssp ---TTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSC
T ss_pred ---CCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCc
Confidence 999999999875 778899987333222222334443343 57999999999986 799999999988
Q ss_pred EEEEecCCCCce------------------EEEEEe-CCCeEEEEeCC-CeEEEEeCCCCeEEEEecCCCCCEEEEEEeC
Q 001042 915 LLEELKGHDAQV------------------SCVRML-SGERVLTASHD-GTVKMWDVRTDTCVATVGRCSSAVLCMEYDD 974 (1178)
Q Consensus 915 ~~~~l~~h~~~V------------------~~l~~~-~~~~l~sgs~d-g~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp 974 (1178)
.......+...+ .+++|+ +++.|++++.| +.+.+|++.... ......+..+.|.+
T Consensus 146 ~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 220 (723)
T 1xfd_A 146 AIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYT-----GSIYPTVKPYHYPK 220 (723)
T ss_dssp CEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCS-----SSSSCCCEEEECCB
T ss_pred eEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccC-----CcCCCcceeccCCC
Confidence 776665544433 789999 77888877754 467778764321 11234578888888
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceEEEEecC------CccEEEEEEcCC--EEEEEeC----CCcEEEEEcCCCeeeeEe
Q 001042 975 STGILAAGGRDAVANIWDIRAGRQMHKFLGH------TKWIRSIRMDRD--TVITGSD----DWTARMWSISRGTCDAVL 1042 (1178)
Q Consensus 975 ~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~------~~~v~~l~~~~~--~l~sgs~----dg~I~iwd~~~~~~~~~~ 1042 (1178)
+|.. ..+..|++||+.+++....+..+ ...+.+++|+++ .+++.+. +..|++||+.+++....+
T Consensus 221 ~G~~----~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~ 296 (723)
T 1xfd_A 221 AGSE----NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKH 296 (723)
T ss_dssp TTSC----CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEE
T ss_pred CCCC----CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEE
Confidence 7763 34558999999998866666544 567889999655 6655543 357999999999877665
Q ss_pred cc-CCCcEE----EEEEecCCCEEEE--EeCCC------cEEEEE-CCCCceEEEEEecccCCcE---EEEecCCCEEEE
Q 001042 1043 AC-HAGPVQ----CVEYSSSDRGIIT--GSSDG------LLRFWE-NDDGGIKCVKNVTIHSSAI---LSINAGDHWLGI 1105 (1178)
Q Consensus 1043 ~~-h~~~I~----~l~~spdg~~L~s--gs~Dg------~I~iwd-~~~~~~~~~~~~~~h~~~i---~~is~dg~~Las 1105 (1178)
.. +.+.+. .++|+|||+.|+. +..++ .|.+|| ..++...+...+..+...+ .+++|||+.|+.
T Consensus 297 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~ 376 (723)
T 1xfd_A 297 EDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYF 376 (723)
T ss_dssp EEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEE
T ss_pred EeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEE
Confidence 43 344443 7899999998775 44666 466677 3444200122333222322 467999999987
Q ss_pred EeCC---CcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEe
Q 001042 1106 GAAD---NSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGG 1164 (1178)
Q Consensus 1106 gs~D---g~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s 1164 (1178)
.+.+ +.+++|++... .+... ..+.....|...+..++|+|||++|+...
T Consensus 377 ~~~~~~~~~~~l~~~~~~-------~~~~~---~~l~~~~~~~~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 377 LSTEDLPRRRQLYSANTV-------GNFNR---QCLSCDLVENCTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp EESSSCTTCCEEEEECSS-------TTCCC---BCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred EEcCCCCcceEEEEEeCC-------CCCCc---ceecccccCCCCeEEEEECCCCCEEEEEc
Confidence 6655 78999998632 11010 11110011566788999999999888653
No 137
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.83 E-value=2.5e-18 Score=196.30 Aligned_cols=278 Identities=6% Similarity=0.025 Sum_probs=195.8
Q ss_pred EecCCCE-EEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeC-CCeEEEEeCCCCeE-EEEecCCC
Q 001042 889 INSDRGK-VVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASH-DGTVKMWDVRTDTC-VATVGRCS 964 (1178)
Q Consensus 889 ~s~d~~~-l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~-dg~V~iwd~~~~~~-~~~~~~~~ 964 (1178)
+..+++. +++++.++.|.+||..+++....+..+...+ .++|+ +++.+++++. ++.|.+||..+++. ...+..+.
T Consensus 5 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 83 (331)
T 3u4y_A 5 FQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQ 83 (331)
T ss_dssp --CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECS
T ss_pred EcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCC
Confidence 3444444 6778889999999999999988888777777 99998 5666666655 89999999999987 66666655
Q ss_pred CCEEEEEEeCCCCEEEEEeCCC---eEEEEECCCCceEEEEecCCccEEEEEEcCC--E-EEEEeCCCc-EEEEEcCCCe
Q 001042 965 SAVLCMEYDDSTGILAAGGRDA---VANIWDIRAGRQMHKFLGHTKWIRSIRMDRD--T-VITGSDDWT-ARMWSISRGT 1037 (1178)
Q Consensus 965 ~~I~~l~~sp~~~~l~sgs~dg---~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~--~-l~sgs~dg~-I~iwd~~~~~ 1037 (1178)
....+++|+|+|++++++..++ .|.+||+.+++.+..+..+ ....+++|+++ + ++++..++. |.+|++....
T Consensus 84 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g 162 (331)
T 3u4y_A 84 SSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADG 162 (331)
T ss_dssp SCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTC
T ss_pred CCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCC
Confidence 5555599999999999655553 8999999999988877543 45688999654 4 445566688 9999987643
Q ss_pred eee----EeccCCCcEEEEEEecCCCEEEEE-eCCCcEEEEECCCCce-EEEEEecccC-CcEEEEecCCCEEEEEe-CC
Q 001042 1038 CDA----VLACHAGPVQCVEYSSSDRGIITG-SSDGLLRFWENDDGGI-KCVKNVTIHS-SAILSINAGDHWLGIGA-AD 1109 (1178)
Q Consensus 1038 ~~~----~~~~h~~~I~~l~~spdg~~L~sg-s~Dg~I~iwd~~~~~~-~~~~~~~~h~-~~i~~is~dg~~Lasgs-~D 1109 (1178)
.+. ..........+++|+|+|++++++ ..++.|.+||+.+++. ..+..+..+. ..-.+++|+|+++++++ .+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~ 242 (331)
T 3u4y_A 163 VLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTEST 242 (331)
T ss_dssp CEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSE
T ss_pred cEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCC
Confidence 321 112344568999999999966554 4689999999998854 1144444332 23357799999776655 57
Q ss_pred CcEEEEEcCCCccccccCCCCCccceeEeecc---CCCcccEEEEEEcCCCCEEEEEe-CCCcEEEEECCCC
Q 001042 1110 NSMSLFHRPQERLGGFSGTGSKMSGWQLYRTP---QKTVAVVRCIASDLERKRICSGG-RNGLLRLWEATIN 1177 (1178)
Q Consensus 1110 g~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~---~~h~~~V~~lafspdg~~Las~s-~Dg~V~IWdv~tg 1177 (1178)
+.|.+||..+++..... ...... .........++|+|||++|++++ .++.|.+||+.+.
T Consensus 243 ~~i~~~d~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 243 VDVFNFNQLSGTLSFVK---------SFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp EEEEEEETTTTEEEEEE---------EEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred CEEEEEECCCCceeeec---------ccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 88999999854321000 001110 11112235689999999886665 4679999999764
No 138
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.83 E-value=5.1e-18 Score=195.21 Aligned_cols=260 Identities=10% Similarity=0.057 Sum_probs=201.9
Q ss_pred EEecCCCEEEEEeC-------CCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEE-EEeCCCeEEEEeCCCCeEEE
Q 001042 888 AINSDRGKVVSGSD-------DQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVL-TASHDGTVKMWDVRTDTCVA 958 (1178)
Q Consensus 888 ~~s~d~~~l~sgs~-------dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~-sgs~dg~V~iwd~~~~~~~~ 958 (1178)
+++++++.+++++. ++.|.+||..+++.+..+.. ...+..++++ +++.++ ++..++.|.+||..+++.+.
T Consensus 47 ~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~ 125 (353)
T 3vgz_A 47 AYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKG 125 (353)
T ss_dssp EEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEE
T ss_pred EECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEE
Confidence 67999999888874 56899999999998888764 3447788888 566555 55557999999999999888
Q ss_pred EecCCCC---------CEEEEEEeCCCCEEEEEe--CCCeEEEEECCCCceEEEEecCCccEEEEEE--cCCEEEEEeCC
Q 001042 959 TVGRCSS---------AVLCMEYDDSTGILAAGG--RDAVANIWDIRAGRQMHKFLGHTKWIRSIRM--DRDTVITGSDD 1025 (1178)
Q Consensus 959 ~~~~~~~---------~I~~l~~sp~~~~l~sgs--~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sgs~d 1025 (1178)
.+..+.. .+.+++|+|+++.+++++ .++.|.+||..+++.+..+..+...+.++++ +++.+++++.+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 205 (353)
T 3vgz_A 126 RLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNAD 205 (353)
T ss_dssp EEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTT
T ss_pred EEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCC
Confidence 7765432 278999999999887776 4789999999999998888756666777777 45689999999
Q ss_pred CcEEEEEcCCCeeeeEecc----CCCcEEEEEEecCCCEEEEEeC-CCcEEEEECCCCceEEEEEecccCCcEEEEecCC
Q 001042 1026 WTARMWSISRGTCDAVLAC----HAGPVQCVEYSSSDRGIITGSS-DGLLRFWENDDGGIKCVKNVTIHSSAILSINAGD 1100 (1178)
Q Consensus 1026 g~I~iwd~~~~~~~~~~~~----h~~~I~~l~~spdg~~L~sgs~-Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg 1100 (1178)
+.|.+||..+++....+.. +...+.+++|+|+|+++++++. ++.|.+||..+++ ....+..+...-.+++++|
T Consensus 206 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~--~~~~~~~~~~~~~~~s~dg 283 (353)
T 3vgz_A 206 GELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGN--ILAKVAAPESLAVLFNPAR 283 (353)
T ss_dssp SEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCC--EEEEEECSSCCCEEEETTT
T ss_pred CeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCc--EEEEEEcCCCceEEECCCC
Confidence 9999999999988877664 4556889999999998776664 5999999999884 3444444444557789999
Q ss_pred CEEEEEe-CCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCC
Q 001042 1101 HWLGIGA-ADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRN 1166 (1178)
Q Consensus 1101 ~~Lasgs-~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~D 1166 (1178)
+++++++ .++.|.+||..++ +....... ...+.+++|+|||++|+.++.+
T Consensus 284 ~~l~v~~~~~~~v~~~d~~~~---------------~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 284 NEAYVTHRQAGKVSVIDAKSY---------------KVVKTFDT-PTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp TEEEEEETTTTEEEEEETTTT---------------EEEEEEEC-CSEEEEEEECTTSCEEEEEEEC
T ss_pred CEEEEEECCCCeEEEEECCCC---------------eEEEEEec-CCCCCeEEEcCCCCEEEEEEcc
Confidence 9666555 6899999998743 22222222 2357899999999987777655
No 139
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.83 E-value=6.3e-19 Score=223.84 Aligned_cols=272 Identities=9% Similarity=0.034 Sum_probs=197.6
Q ss_pred cceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceE--EEecCCCEEEEEeCCCcE
Q 001042 828 GAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKVVSGSDDQSV 905 (1178)
Q Consensus 828 ~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~--~~s~d~~~l~sgs~dg~I 905 (1178)
..|.+++|+ || +.++.+. |++|++||+. +.+.. .+..+...+. +|+|||+.++++ .++.|
T Consensus 82 ~~v~~~~~s------------pd-~~~~~~~-~~~i~~~d~~--~~~~~-~l~~~~~~~~~~~~SpdG~~la~~-~~~~i 143 (706)
T 2z3z_A 82 FPSFRTLDA------------GR-GLVVLFT-QGGLVGFDML--ARKVT-YLFDTNEETASLDFSPVGDRVAYV-RNHNL 143 (706)
T ss_dssp CCCEEEEET------------TT-TEEEEEE-TTEEEEEETT--TTEEE-EEECCTTCCTTCEECTTSSEEEEE-ETTEE
T ss_pred cCceeEEEC------------CC-CeEEEEE-CCEEEEEECC--CCceE-EccCCcccccCCcCCCCCCEEEEE-ECCeE
Confidence 568999997 78 6666554 5999999986 33332 3333444443 689999999985 67999
Q ss_pred EEEECCC-----CcEEEEecCCCCc--------------eEEEEEe-CCCeEEEEe------------------------
Q 001042 906 LVWDKQT-----SQLLEELKGHDAQ--------------VSCVRML-SGERVLTAS------------------------ 941 (1178)
Q Consensus 906 ~iwd~~t-----~~~~~~l~~h~~~--------------V~~l~~~-~~~~l~sgs------------------------ 941 (1178)
++||+.+ ++.......+... +.+++|+ +++.|++++
T Consensus 144 ~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~ 223 (706)
T 2z3z_A 144 YIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPL 223 (706)
T ss_dssp EEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEE
T ss_pred EEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEe
Confidence 9999998 8766544444333 4889999 788888887
Q ss_pred ---------CCCeEEEEeCCCCeEEEEec--CCCCCEEEEEEeCCCCEEEEEeCCC-----eEEEEECCCCceEEEEe--
Q 001042 942 ---------HDGTVKMWDVRTDTCVATVG--RCSSAVLCMEYDDSTGILAAGGRDA-----VANIWDIRAGRQMHKFL-- 1003 (1178)
Q Consensus 942 ---------~dg~V~iwd~~~~~~~~~~~--~~~~~I~~l~~sp~~~~l~sgs~dg-----~I~lwD~~~~~~~~~~~-- 1003 (1178)
.++.|.+||+.+++...... .+...+.+++|+|||+.+++++.++ .|++||+.+++....+.
T Consensus 224 ~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~ 303 (706)
T 2z3z_A 224 YYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVE 303 (706)
T ss_dssp CCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEE
T ss_pred eCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEc
Confidence 45789999999988655442 3556799999999999999987765 89999999984443332
Q ss_pred cCCc---cEEEEEEcC----CEEEEEeCCCcEEEEEcC-CCeeeeEeccCCCcEEE-EEEecCCCEEEEEeCC-C----c
Q 001042 1004 GHTK---WIRSIRMDR----DTVITGSDDWTARMWSIS-RGTCDAVLACHAGPVQC-VEYSSSDRGIITGSSD-G----L 1069 (1178)
Q Consensus 1004 ~~~~---~v~~l~~~~----~~l~sgs~dg~I~iwd~~-~~~~~~~~~~h~~~I~~-l~~spdg~~L~sgs~D-g----~ 1069 (1178)
.+.. .+.+++|++ +++++++.||.+++|++. ++.....+..|...+.+ ++|+|+|+.|+.++.+ + .
T Consensus 304 ~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~ 383 (706)
T 2z3z_A 304 TDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERH 383 (706)
T ss_dssp ECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBE
T ss_pred cCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEE
Confidence 2222 235567754 488888899999999886 67777788878878877 7999999988766544 3 6
Q ss_pred EEEEECCCCceEEEEEecccCCcE--EEEecCCCEEEEEeCC----CcEEEEEcCCCc
Q 001042 1070 LRFWENDDGGIKCVKNVTIHSSAI--LSINAGDHWLGIGAAD----NSMSLFHRPQER 1121 (1178)
Q Consensus 1070 I~iwd~~~~~~~~~~~~~~h~~~i--~~is~dg~~Lasgs~D----g~I~iwd~~~~~ 1121 (1178)
|..||..++.... +. |...+ .+++|||++++.++.+ +.|++||+.+++
T Consensus 384 l~~~d~~~~~~~~---l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 384 FYCIDIKGGKTKD---LT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EEEEETTCCCCEE---SC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred EEEEEcCCCCcee---cc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 7777777764322 22 44444 4558999998876544 569999997654
No 140
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.83 E-value=6.9e-19 Score=223.48 Aligned_cols=301 Identities=10% Similarity=0.081 Sum_probs=211.8
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCceeeEeecccc-----------------cceE--EEecCCCEEEEEeCCCcEEEEECC
Q 001042 851 AGFFISGSTDCLVKIWDPSLRGSELRATLKGHT-----------------RTVR--AINSDRGKVVSGSDDQSVLVWDKQ 911 (1178)
Q Consensus 851 ~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~-----------------~~V~--~~s~d~~~l~sgs~dg~I~iwd~~ 911 (1178)
|+.+++++.|| | +||+..... ....+..|. ..+. +++|| +.++.+. ++.+++||+.
T Consensus 35 g~~~~~~~~~~-i-~~d~~tg~~-~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~~i~~~d~~ 109 (706)
T 2z3z_A 35 GDNYVFIEGDD-L-VFNKANGKS-AQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QGGLVGFDML 109 (706)
T ss_dssp TTEEEEEETTE-E-EEEC--------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TTEEEEEETT
T ss_pred CCeEEEEeCCc-E-EEECCCCcE-eeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CCEEEEEECC
Confidence 66777888888 8 999873332 001222222 2355 56899 6666654 5999999999
Q ss_pred CCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCC-----CeEEEEecCCCCC--------------EEEEE
Q 001042 912 TSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRT-----DTCVATVGRCSSA--------------VLCME 971 (1178)
Q Consensus 912 t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~-----~~~~~~~~~~~~~--------------I~~l~ 971 (1178)
+++... +..+...+.+++|+ +++.+++ +.|+.|++||+.+ ++.......+... +.+++
T Consensus 110 ~~~~~~-l~~~~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~ 187 (706)
T 2z3z_A 110 ARKVTY-LFDTNEETASLDFSPVGDRVAY-VRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTF 187 (706)
T ss_dssp TTEEEE-EECCTTCCTTCEECTTSSEEEE-EETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEE
T ss_pred CCceEE-ccCCcccccCCcCCCCCCEEEE-EECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEE
Confidence 887644 44567788999999 6777777 4789999999998 7766544433332 47899
Q ss_pred EeCCCCEEEEEe---------------------------------CCCeEEEEECCCCceEEEEe--cCCccEEEEEEc-
Q 001042 972 YDDSTGILAAGG---------------------------------RDAVANIWDIRAGRQMHKFL--GHTKWIRSIRMD- 1015 (1178)
Q Consensus 972 ~sp~~~~l~sgs---------------------------------~dg~I~lwD~~~~~~~~~~~--~~~~~v~~l~~~- 1015 (1178)
|+|||+.|++++ .++.|++||+.+++...... .+...+.+++|+
T Consensus 188 ~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp 267 (706)
T 2z3z_A 188 WSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSP 267 (706)
T ss_dssp ECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECT
T ss_pred ECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEEC
Confidence 999999999987 45789999999887654432 456788999995
Q ss_pred -CCEEEEEeCCC-----cEEEEEcCCCeeeeEec--cCCC---cEEEEEEec--CCCEEEEEeCCCcEEEEECC-CCceE
Q 001042 1016 -RDTVITGSDDW-----TARMWSISRGTCDAVLA--CHAG---PVQCVEYSS--SDRGIITGSSDGLLRFWEND-DGGIK 1081 (1178)
Q Consensus 1016 -~~~l~sgs~dg-----~I~iwd~~~~~~~~~~~--~h~~---~I~~l~~sp--dg~~L~sgs~Dg~I~iwd~~-~~~~~ 1081 (1178)
++.+++++.++ .|++||+.+++....+. .+.. .+.+++|+| +|+++++++.||.+++|+++ ++ .
T Consensus 268 dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~--~ 345 (706)
T 2z3z_A 268 DENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTG--R 345 (706)
T ss_dssp TSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTS--C
T ss_pred CCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCC--C
Confidence 45788877775 89999999983333332 2222 246789999 99999999999999999886 44 4
Q ss_pred EEEEecccCCcEE---EEecCCCEEEEEeCC-C----cEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEE
Q 001042 1082 CVKNVTIHSSAIL---SINAGDHWLGIGAAD-N----SMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIAS 1153 (1178)
Q Consensus 1082 ~~~~~~~h~~~i~---~is~dg~~Lasgs~D-g----~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~laf 1153 (1178)
....+..|...+. +++|+|+.|+.++.+ + .|..||..++. . +. + .|...+.+++|
T Consensus 346 ~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~----------~---~~---l-~~~~~~~~~~~ 408 (706)
T 2z3z_A 346 LIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK----------T---KD---L-TPESGMHRTQL 408 (706)
T ss_dssp EEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC----------C---EE---S-CCSSSEEEEEE
T ss_pred EEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC----------c---ee---c-cCCCceEEEEE
Confidence 4556666666553 568999988766554 3 45556654321 0 11 1 24566899999
Q ss_pred cCCCCEEEEEeCC----CcEEEEECCCC
Q 001042 1154 DLERKRICSGGRN----GLLRLWEATIN 1177 (1178)
Q Consensus 1154 spdg~~Las~s~D----g~V~IWdv~tg 1177 (1178)
||||++|+.++.+ +.|.+||++++
T Consensus 409 spdg~~l~~~~~~~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 409 SPDGSAIIDIFQSPTVPRKVTVTNIGKG 436 (706)
T ss_dssp CTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred CCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence 9999998877544 56999999876
No 141
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.83 E-value=4e-18 Score=194.63 Aligned_cols=267 Identities=11% Similarity=0.064 Sum_probs=194.9
Q ss_pred CCCEEEEEeCCCcEEEEcCCCCCceeeEeeccccc-ceEEEecCCCEEEEEeC-CCcEEEEECCCCcE-EEEecCCCCce
Q 001042 850 DAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTR-TVRAINSDRGKVVSGSD-DQSVLVWDKQTSQL-LEELKGHDAQV 926 (1178)
Q Consensus 850 d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~-~V~~~s~d~~~l~sgs~-dg~I~iwd~~t~~~-~~~l~~h~~~V 926 (1178)
.+..+++++.++.|++||.. ..+.......+.. ...+++++++++++++. ++.|.+||..+++. ...+..+..+.
T Consensus 9 ~~~~~v~~~~~~~v~~~d~~--~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 86 (331)
T 3u4y_A 9 SNFGIVVEQHLRRISFFSTD--TLEILNQITLGYDFVDTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSM 86 (331)
T ss_dssp CCEEEEEEGGGTEEEEEETT--TCCEEEEEECCCCEEEEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCC
T ss_pred CCEEEEEecCCCeEEEEeCc--ccceeeeEEccCCcceEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCc
Confidence 34457788889999999976 3344444433333 34467999997776665 89999999999987 77777777776
Q ss_pred EEEEEe-CCCeEEEEeCCC---eEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEE-eCCCe-EEEEECCCCceEE
Q 001042 927 SCVRML-SGERVLTASHDG---TVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAG-GRDAV-ANIWDIRAGRQMH 1000 (1178)
Q Consensus 927 ~~l~~~-~~~~l~sgs~dg---~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sg-s~dg~-I~lwD~~~~~~~~ 1000 (1178)
.+++|+ ++++++++..++ .|.+||+.+++.+..+.. .....+++|+|+|++++++ ..++. +.+|++.....+.
T Consensus 87 ~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~ 165 (331)
T 3u4y_A 87 ADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLF 165 (331)
T ss_dssp CCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEE
T ss_pred cceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEe
Confidence 668998 677777555443 999999999998887754 4557999999999866555 55578 9999988644331
Q ss_pred ----EEecCCccEEEEEEcC--CEEE-EEeCCCcEEEEEcCCCee---eeEeccCCCcEEEEEEecCCCEEEEEe-CCCc
Q 001042 1001 ----KFLGHTKWIRSIRMDR--DTVI-TGSDDWTARMWSISRGTC---DAVLACHAGPVQCVEYSSSDRGIITGS-SDGL 1069 (1178)
Q Consensus 1001 ----~~~~~~~~v~~l~~~~--~~l~-sgs~dg~I~iwd~~~~~~---~~~~~~h~~~I~~l~~spdg~~L~sgs-~Dg~ 1069 (1178)
........+..+++++ ++++ ++..++.|++||+.+++. +..+.. ...+.+++|+|+|+++++++ .++.
T Consensus 166 ~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~ 244 (331)
T 3u4y_A 166 DTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVD 244 (331)
T ss_dssp EEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEE
T ss_pred ecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEEcCCCE
Confidence 2223445678888854 4454 455689999999999887 766664 46678999999999776654 5788
Q ss_pred EEEEECCCCceEEEEEeccc----CCc-----EEEEecCCCEEEEEeC-CCcEEEEEcCCC
Q 001042 1070 LRFWENDDGGIKCVKNVTIH----SSA-----ILSINAGDHWLGIGAA-DNSMSLFHRPQE 1120 (1178)
Q Consensus 1070 I~iwd~~~~~~~~~~~~~~h----~~~-----i~~is~dg~~Lasgs~-Dg~I~iwd~~~~ 1120 (1178)
|.+||..+++...+..+..+ ... -.+++|+|++|++++. ++.|.+||+...
T Consensus 245 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 245 VFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp EEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred EEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 99999999865445544433 111 2588999998876554 569999999754
No 142
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.83 E-value=2e-18 Score=197.40 Aligned_cols=266 Identities=12% Similarity=0.164 Sum_probs=185.6
Q ss_pred EEEEEeCCCcEEEEECC-CCc--EEEEecCCCCceEEEEEe-CCCeEEEEeCC-CeEEEEeCC--CCe--EEEEecCCCC
Q 001042 895 KVVSGSDDQSVLVWDKQ-TSQ--LLEELKGHDAQVSCVRML-SGERVLTASHD-GTVKMWDVR--TDT--CVATVGRCSS 965 (1178)
Q Consensus 895 ~l~sgs~dg~I~iwd~~-t~~--~~~~l~~h~~~V~~l~~~-~~~~l~sgs~d-g~V~iwd~~--~~~--~~~~~~~~~~ 965 (1178)
.+++++.|+.|++||+. +++ .+..+ .+...+.+++|+ +++.+++++.+ +.|.+|++. +++ .+..+..+.
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~- 84 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG- 84 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-
Confidence 34444789999999995 342 33333 477789999999 67778888876 999999997 554 334444333
Q ss_pred CEEEEEEeCCCCEEEEEeC-CCeEEEEECC---CCceEEEEecCCccEEEEEEcC--CEEEEEe-CCCcEEEEEcCC-Ce
Q 001042 966 AVLCMEYDDSTGILAAGGR-DAVANIWDIR---AGRQMHKFLGHTKWIRSIRMDR--DTVITGS-DDWTARMWSISR-GT 1037 (1178)
Q Consensus 966 ~I~~l~~sp~~~~l~sgs~-dg~I~lwD~~---~~~~~~~~~~~~~~v~~l~~~~--~~l~sgs-~dg~I~iwd~~~-~~ 1037 (1178)
.+..++|+|+++.+++++. ++.|.+||+. +.+.+..+.. ...+.+++|++ +.+++++ .++.|++||+.+ ++
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~ 163 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGH 163 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCc
Confidence 7889999999998877665 8899999994 3344444433 34577888854 4777777 899999999987 64
Q ss_pred eee----Eecc-CCCcEEEEEEecCCCEEEEEe-CCCcEEEEECC--CCceEEEEEecc----cC--Cc--EEEEecCCC
Q 001042 1038 CDA----VLAC-HAGPVQCVEYSSSDRGIITGS-SDGLLRFWEND--DGGIKCVKNVTI----HS--SA--ILSINAGDH 1101 (1178)
Q Consensus 1038 ~~~----~~~~-h~~~I~~l~~spdg~~L~sgs-~Dg~I~iwd~~--~~~~~~~~~~~~----h~--~~--i~~is~dg~ 1101 (1178)
... .... ....+.+++|+|+|+++++++ .++.|.+|+++ ++.......... +. .. -.+++|+|+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~ 243 (343)
T 1ri6_A 164 LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGR 243 (343)
T ss_dssp EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSS
T ss_pred eeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCC
Confidence 432 2222 345788999999999776554 78999999995 354433333321 11 12 256789998
Q ss_pred EEEE-EeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEe-CCCcEEEEECC
Q 001042 1102 WLGI-GAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGG-RNGLLRLWEAT 1175 (1178)
Q Consensus 1102 ~Las-gs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s-~Dg~V~IWdv~ 1175 (1178)
++++ +..++.|.+||+... ++ . .+.......+.. +.+++|+|||++|++++ .|+.|.+|+++
T Consensus 244 ~l~v~~~~~~~i~v~d~~~~-------~~-~---~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 244 HLYACDRTASLITVFSVSED-------GS-V---LSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EEEEEETTTTEEEEEEECTT-------SC-C---EEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred EEEEEecCCCEEEEEEEcCC-------CC-c---eEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 8875 457899999999721 11 1 133333333333 78899999999988887 68999999554
No 143
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.82 E-value=8.4e-18 Score=193.40 Aligned_cols=266 Identities=10% Similarity=0.092 Sum_probs=204.8
Q ss_pred cCCcceEEEEecCCCCcccccc--------cc-eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEee
Q 001042 766 GIGRSWVQSMFSREASSRSHSF--------SR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCV 836 (1178)
Q Consensus 766 gh~~~i~~~aFSpdg~~las~~--------~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs 836 (1178)
........++|||||+.+++++ .. |.+||..+++ .++.+.. ...+.+++|+
T Consensus 38 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~-------------------~~~~~~~-~~~~~~~~~s 97 (353)
T 3vgz_A 38 AVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLE-------------------VTQAIHN-DLKPFGATIN 97 (353)
T ss_dssp EEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCC-------------------EEEEEEE-SSCCCSEEEE
T ss_pred hhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCe-------------------EEEEEec-CCCcceEEEC
Confidence 3456678899999999887776 23 9999998776 4444443 3346778887
Q ss_pred eccceeccccccCCCCEEE-EEeCCCcEEEEcCCCCCceeeEeecccccc---------e--EEEecCCCEEEEEe--CC
Q 001042 837 TKREVWDLVGDREDAGFFI-SGSTDCLVKIWDPSLRGSELRATLKGHTRT---------V--RAINSDRGKVVSGS--DD 902 (1178)
Q Consensus 837 ~~~~~~~~~~~s~d~~~La-sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~---------V--~~~s~d~~~l~sgs--~d 902 (1178)
++|++++ ++..++.|.+||.. +.+....+..+... . .+++++++.+++++ .+
T Consensus 98 ------------~dg~~l~v~~~~~~~v~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~ 163 (353)
T 3vgz_A 98 ------------NTTQTLWFGNTVNSAVTAIDAK--TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKE 163 (353)
T ss_dssp ------------TTTTEEEEEETTTTEEEEEETT--TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSS
T ss_pred ------------CCCCEEEEEecCCCEEEEEeCC--CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCC
Confidence 8888554 55567999999976 34444444443211 2 36799999888776 47
Q ss_pred CcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecC----CCCCEEEEEEeCCCC
Q 001042 903 QSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGR----CSSAVLCMEYDDSTG 977 (1178)
Q Consensus 903 g~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~----~~~~I~~l~~sp~~~ 977 (1178)
+.|.+||..+++.+..+..+...+.+++|+ +++.+++++.++.|.+||..+++....+.. +...+.+++|+|+++
T Consensus 164 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 243 (353)
T 3vgz_A 164 SVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQ 243 (353)
T ss_dssp CEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTT
T ss_pred ceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCC
Confidence 899999999999998888677778899999 778899999999999999999998877654 455688999999999
Q ss_pred EEEEEeC-CCeEEEEECCCCceEEEEecCCccEEEEEE--cCCEEEEEe-CCCcEEEEEcCCCeeeeEeccCCCcEEEEE
Q 001042 978 ILAAGGR-DAVANIWDIRAGRQMHKFLGHTKWIRSIRM--DRDTVITGS-DDWTARMWSISRGTCDAVLACHAGPVQCVE 1053 (1178)
Q Consensus 978 ~l~sgs~-dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~ 1053 (1178)
.+++++. ++.|.+||..+++.+..+..... ..+++ +++.+++++ .++.|.+||..+++.+..+... ..+.+++
T Consensus 244 ~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~ 320 (353)
T 3vgz_A 244 RAFITDSKAAEVLVVDTRNGNILAKVAAPES--LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLA 320 (353)
T ss_dssp EEEEEESSSSEEEEEETTTCCEEEEEECSSC--CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCcEEEEEEcCCC--ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEE
Confidence 8777765 49999999999998887765443 45666 455555554 7899999999999988887643 4689999
Q ss_pred EecCCCEEEEEeCCC
Q 001042 1054 YSSSDRGIITGSSDG 1068 (1178)
Q Consensus 1054 ~spdg~~L~sgs~Dg 1068 (1178)
|+|+|++++++..++
T Consensus 321 ~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 321 LSADGKTLYVSVKQK 335 (353)
T ss_dssp ECTTSCEEEEEEECC
T ss_pred EcCCCCEEEEEEccc
Confidence 999999877776554
No 144
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.82 E-value=5.2e-18 Score=194.02 Aligned_cols=251 Identities=11% Similarity=0.148 Sum_probs=176.4
Q ss_pred cccccceEEEEeeeccceeccccccCCCCEEEEEeCC-CcEEEEcCCC--CCceeeEeecccc-cceEEEecCCCEEEEE
Q 001042 824 RGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTD-CLVKIWDPSL--RGSELRATLKGHT-RTVRAINSDRGKVVSG 899 (1178)
Q Consensus 824 ~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~D-g~I~iWd~~~--~~~~~~~~l~~h~-~~V~~~s~d~~~l~sg 899 (1178)
..|...+.+++|+ |++++|++++.+ +.|++|+++. ........+..+. ..-.++++++++++++
T Consensus 34 ~~~~~~~~~~~~s------------pdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 101 (343)
T 1ri6_A 34 VDVPGQVQPMVVS------------PDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVG 101 (343)
T ss_dssp EECSSCCCCEEEC------------TTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEE
T ss_pred EecCCCCceEEEC------------CCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEE
Confidence 3577788899997 899999888886 9999999862 2333334444333 2334679999988776
Q ss_pred eC-CCcEEEEECC---CCcEEEEecCCCCceEEEEEe-CCCeEEEEe-CCCeEEEEeCCC-CeEEE----Eec-CCCCCE
Q 001042 900 SD-DQSVLVWDKQ---TSQLLEELKGHDAQVSCVRML-SGERVLTAS-HDGTVKMWDVRT-DTCVA----TVG-RCSSAV 967 (1178)
Q Consensus 900 s~-dg~I~iwd~~---t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs-~dg~V~iwd~~~-~~~~~----~~~-~~~~~I 967 (1178)
+. ++.|.+||+. +++....+..+ ..+.+++|+ +++.+++++ .++.|.+||+.+ ++... ... .....+
T Consensus 102 ~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~ 180 (343)
T 1ri6_A 102 SYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGP 180 (343)
T ss_dssp ETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCE
T ss_pred ecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCc
Confidence 65 8899999994 34455555543 458889999 667777777 899999999987 65432 222 234578
Q ss_pred EEEEEeCCCCEEEEEe-CCCeEEEEECCC--Cce--EEEEec---C---CccEEEEEEcC--CEEE-EEeCCCcEEEEEc
Q 001042 968 LCMEYDDSTGILAAGG-RDAVANIWDIRA--GRQ--MHKFLG---H---TKWIRSIRMDR--DTVI-TGSDDWTARMWSI 1033 (1178)
Q Consensus 968 ~~l~~sp~~~~l~sgs-~dg~I~lwD~~~--~~~--~~~~~~---~---~~~v~~l~~~~--~~l~-sgs~dg~I~iwd~ 1033 (1178)
.+++|+|+++++++++ .++.|.+||+.. ++. ...... . ...+.+++|++ ++++ ++..++.|.+||+
T Consensus 181 ~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~ 260 (343)
T 1ri6_A 181 RHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSV 260 (343)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEE
Confidence 8999999999776655 789999999953 433 222221 1 23566788864 4665 5557999999999
Q ss_pred C--C--CeeeeEeccCCCcEEEEEEecCCCEEEEEe-CCCcEEEEEC--CCCceEEEEEecc
Q 001042 1034 S--R--GTCDAVLACHAGPVQCVEYSSSDRGIITGS-SDGLLRFWEN--DDGGIKCVKNVTI 1088 (1178)
Q Consensus 1034 ~--~--~~~~~~~~~h~~~I~~l~~spdg~~L~sgs-~Dg~I~iwd~--~~~~~~~~~~~~~ 1088 (1178)
. + .+.+..+..+.. +.+++|+|+|++|++++ .++.|.+|++ .++....+..+..
T Consensus 261 ~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~ 321 (343)
T 1ri6_A 261 SEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV 321 (343)
T ss_dssp CTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEEC
T ss_pred cCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccccc
Confidence 8 2 344445554444 88999999999988887 6899999954 4665555555443
No 145
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.82 E-value=4.6e-19 Score=225.63 Aligned_cols=303 Identities=10% Similarity=0.073 Sum_probs=205.7
Q ss_pred cCCCCEEEEEeCCCcEEEEcCCCCCceeeEeeccccc---ce--EEEecCCCEEEEEeCC---------CcEEEEECCCC
Q 001042 848 REDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTR---TV--RAINSDRGKVVSGSDD---------QSVLVWDKQTS 913 (1178)
Q Consensus 848 s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~---~V--~~~s~d~~~l~sgs~d---------g~I~iwd~~t~ 913 (1178)
+|||+++++ +.||+|++||+. +.+....+.+|.. .+ .++||||++|++++.+ +.+.+||+.++
T Consensus 25 spdg~~~~~-~~dg~i~~~d~~--~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 101 (723)
T 1xfd_A 25 ISDTEFIYR-EQKGTVRLWNVE--TNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG 101 (723)
T ss_dssp SSSSCBCCC-CSSSCEEEBCGG--GCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred cCCCcEEEE-eCCCCEEEEECC--CCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCC
Confidence 389997776 789999999976 3444556666653 24 3689999999999874 78889999998
Q ss_pred cEEEEec---CCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCC------------------EEEEE
Q 001042 914 QLLEELK---GHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSA------------------VLCME 971 (1178)
Q Consensus 914 ~~~~~l~---~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~------------------I~~l~ 971 (1178)
+. ..+. +|...+..++|+ +++.++.++. +.|++||+.+++.......+... +.+++
T Consensus 102 ~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~ 179 (723)
T 1xfd_A 102 DP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHW 179 (723)
T ss_dssp CC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEE
T ss_pred ce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEE
Confidence 76 3343 345558899999 6778888776 79999999998877665543333 37899
Q ss_pred EeCCCCEEEEEeCC-CeEEEEECCCCceEEEEecCCccEEEEEEcCCEEEEEeCCCcEEEEEcCCCeeeeEeccC-----
Q 001042 972 YDDSTGILAAGGRD-AVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACH----- 1045 (1178)
Q Consensus 972 ~sp~~~~l~sgs~d-g~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h----- 1045 (1178)
|+|||+.|++++.+ +.+.+|++..... .+...+..+.+...-- ...+..|++||+.+++....+..+
T Consensus 180 ~SpDg~~la~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~G~--~~~~~~l~~~d~~~~~~~~~l~~~~~~~~ 252 (723)
T 1xfd_A 180 WSPDGTRLAYAAINDSRVPIMELPTYTG-----SIYPTVKPYHYPKAGS--ENPSISLHVIGLNGPTHDLEMMPPDDPRM 252 (723)
T ss_dssp ECTTSSEEEEEEEECTTSCEEEECCCSS-----SSSCCCEEEECCBTTS--CCCEEEEEEEESSSSCCCEECCCCCCGGG
T ss_pred ECCCCCEEEEEEECCCccceEEeeccCC-----cCCCcceeccCCCCCC--CCCeeEEEEEECCCCceeEEeeCCccCCC
Confidence 99999999988754 4677777643221 1223455666532100 023458999999998866666654
Q ss_pred -CCcEEEEEEecCCCEEEEEeC----CCcEEEEECCCCceEEEEEecccCCc------EEEEecCCCEEEE--EeCCC--
Q 001042 1046 -AGPVQCVEYSSSDRGIITGSS----DGLLRFWENDDGGIKCVKNVTIHSSA------ILSINAGDHWLGI--GAADN-- 1110 (1178)
Q Consensus 1046 -~~~I~~l~~spdg~~L~sgs~----Dg~I~iwd~~~~~~~~~~~~~~h~~~------i~~is~dg~~Las--gs~Dg-- 1110 (1178)
...+.+++|+|||+++++.+. ++.|++||+.+++...+... .+... -..++|||+.|+. +..++
T Consensus 253 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 331 (723)
T 1xfd_A 253 REYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHED-ESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGR 331 (723)
T ss_dssp SSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE-ECSSCCCCCCCCCEECTTSCSEEEEEEECCSSS
T ss_pred ccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEe-ccCCEEeccCCCceEcCCCCeEEEEEecccCCC
Confidence 667999999999998877653 35799999999854333222 12222 3467999997775 44666
Q ss_pred ----cEEEEE-cCCCccccccCCCCCccceeEeeccCCCcccEE-EEEEcCCCCEEEEEeCC---CcEEEEECCC
Q 001042 1111 ----SMSLFH-RPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVR-CIASDLERKRICSGGRN---GLLRLWEATI 1176 (1178)
Q Consensus 1111 ----~I~iwd-~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~-~lafspdg~~Las~s~D---g~V~IWdv~t 1176 (1178)
.|.+|| ..++. . .+...+..+...+. .++|+|||+.|+..+.+ +.+++|+++.
T Consensus 332 ~~~~~l~~~d~~~~~~---------~----~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 332 GKFYHITVSSSQPNSS---------N----DNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp SCEEEEEEECSSCCSS---------S----CCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECS
T ss_pred cceeEEEEEeccCCCC---------c----cceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeC
Confidence 466666 33221 0 00112222223344 47999999999876655 8899999864
No 146
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.82 E-value=2e-18 Score=196.97 Aligned_cols=262 Identities=10% Similarity=0.057 Sum_probs=197.1
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEecCCCC--ceEEEEEe-CCCeE-EEEeCCCeEEEEeCCCCeEEEEecCCC-----
Q 001042 894 GKVVSGSDDQSVLVWDKQTSQLLEELKGHDA--QVSCVRML-SGERV-LTASHDGTVKMWDVRTDTCVATVGRCS----- 964 (1178)
Q Consensus 894 ~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~--~V~~l~~~-~~~~l-~sgs~dg~V~iwd~~~~~~~~~~~~~~----- 964 (1178)
+++++++.++.|.+||..+++.+..+..... .+..++|+ +++.+ ++++.++.|.+||+.+++.+..+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 4789999999999999999999888763332 57889999 55555 455668999999999998877664321
Q ss_pred CCEEEEEEeCCCCEEEEEe------------CCCeEEEEECCCCceEEEEecCCccEEEEEEc--CCEEEEEeCCCcEEE
Q 001042 965 SAVLCMEYDDSTGILAAGG------------RDAVANIWDIRAGRQMHKFLGHTKWIRSIRMD--RDTVITGSDDWTARM 1030 (1178)
Q Consensus 965 ~~I~~l~~sp~~~~l~sgs------------~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sgs~dg~I~i 1030 (1178)
..+.+++|+|+|+.+++++ .++.|.+||+.+++.+..+.. ...+.+++++ +++++++ ++.|++
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~ 158 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHV 158 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEE
Confidence 2567899999999998886 579999999999988877654 4456777785 4567776 689999
Q ss_pred EEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCC------------------------cEEEEECCCCceEEEEEe
Q 001042 1031 WSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDG------------------------LLRFWENDDGGIKCVKNV 1086 (1178)
Q Consensus 1031 wd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg------------------------~I~iwd~~~~~~~~~~~~ 1086 (1178)
||+.+++....+..+.. ...+.|+|+|+.++.++.++ .|.+||..+++.. ....
T Consensus 159 ~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~ 236 (337)
T 1pby_B 159 MDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREV 236 (337)
T ss_dssp EETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEE
T ss_pred EECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-Eeec
Confidence 99999988877764431 11237899998776554332 4689999998654 4444
Q ss_pred cccCCcE--EEEecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEe
Q 001042 1087 TIHSSAI--LSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGG 1164 (1178)
Q Consensus 1087 ~~h~~~i--~~is~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s 1164 (1178)
..+...+ .+++|+|++++++ ++.|.+||+.++ +....... ...+.+++|+|||++|++++
T Consensus 237 ~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~---------------~~~~~~~~-~~~~~~~~~s~dg~~l~~~~ 298 (337)
T 1pby_B 237 RIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKN---------------ASIKRVPL-PHSYYSVNVSTDGSTVWLGG 298 (337)
T ss_dssp EECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTT---------------EEEEEEEC-SSCCCEEEECTTSCEEEEES
T ss_pred CCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCC---------------cCcceecC-CCceeeEEECCCCCEEEEEc
Confidence 4555555 4568999999988 799999998743 22222211 23467899999999999999
Q ss_pred CCCcEEEEECCCCC
Q 001042 1165 RNGLLRLWEATINI 1178 (1178)
Q Consensus 1165 ~Dg~V~IWdv~tg~ 1178 (1178)
.|+.|++||+.+++
T Consensus 299 ~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 299 ALGDLAAYDAETLE 312 (337)
T ss_dssp BSSEEEEEETTTCC
T ss_pred CCCcEEEEECcCCc
Confidence 99999999998864
No 147
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.80 E-value=1.2e-18 Score=194.06 Aligned_cols=251 Identities=11% Similarity=0.053 Sum_probs=186.3
Q ss_pred EEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCC-CeEEEEecCC-CCCEEEEEEeC
Q 001042 898 SGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRT-DTCVATVGRC-SSAVLCMEYDD 974 (1178)
Q Consensus 898 sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~-~~~~~~~~~~-~~~I~~l~~sp 974 (1178)
.++.|++|++||+.+++.. .+..|...+.+++|+ ++.++++++ ++.|.+||+.+ ++.......+ ...+.+++|+|
T Consensus 17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp 94 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP 94 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT
T ss_pred CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC
Confidence 3467899999999988876 455588999999999 677777765 88999999999 8776666554 36788999999
Q ss_pred CCCEEEEEeC--C--CeEEEEECCCCceEEEEecCCccEEEEEEcC--CEEE-EEeCCCcEEEEEcCC-CeeeeEeccCC
Q 001042 975 STGILAAGGR--D--AVANIWDIRAGRQMHKFLGHTKWIRSIRMDR--DTVI-TGSDDWTARMWSISR-GTCDAVLACHA 1046 (1178)
Q Consensus 975 ~~~~l~sgs~--d--g~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~--~~l~-sgs~dg~I~iwd~~~-~~~~~~~~~h~ 1046 (1178)
+++.+++++. + ..|..||..+++ ...+..+ ..+..++|++ +.++ +++.++.+++|++.. +.....+..+.
T Consensus 95 dg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 172 (297)
T 2ojh_A 95 DGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGE 172 (297)
T ss_dssp TSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSS
T ss_pred CCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCC
Confidence 9999999983 3 455555555554 3444333 3488888854 4555 788899999998642 33445666788
Q ss_pred CcEEEEEEecCCCEEEEEe-CCCcEEEEECC-CCceEEEEEecccCCcEE--EEecCCCEEEEEeCC-----------Cc
Q 001042 1047 GPVQCVEYSSSDRGIITGS-SDGLLRFWEND-DGGIKCVKNVTIHSSAIL--SINAGDHWLGIGAAD-----------NS 1111 (1178)
Q Consensus 1047 ~~I~~l~~spdg~~L~sgs-~Dg~I~iwd~~-~~~~~~~~~~~~h~~~i~--~is~dg~~Lasgs~D-----------g~ 1111 (1178)
..+.+++|+|+|+.++.++ .++.+++|+++ .+ .....+..|...+. +++|+|++|++++.+ +.
T Consensus 173 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~ 250 (297)
T 2ojh_A 173 GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG--SSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVR 250 (297)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS--SCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEE
T ss_pred CccccceECCCCCEEEEEecCCCCccEEEECCCC--CCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceE
Confidence 8999999999999888766 58999999986 33 23455556665554 458999999988876 56
Q ss_pred EEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCC
Q 001042 1112 MSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNG 1167 (1178)
Q Consensus 1112 I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg 1167 (1178)
|.+||+.+++. ..+....+|...+.+++|+|||++|++++.|.
T Consensus 251 l~~~d~~~~~~-------------~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 251 VQLMDMDGGNV-------------ETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEETTSCSC-------------EEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EEEEecCCCCc-------------eeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 99999874321 23333446777889999999999999887654
No 148
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.79 E-value=2.2e-17 Score=188.30 Aligned_cols=259 Identities=10% Similarity=0.075 Sum_probs=192.2
Q ss_pred CEEEEEeCCCcEEEEcCCCCCceeeEeec-cc---ccceEEEecCCCEEE-EEeCCCcEEEEECCCCcEEEEecCC----
Q 001042 852 GFFISGSTDCLVKIWDPSLRGSELRATLK-GH---TRTVRAINSDRGKVV-SGSDDQSVLVWDKQTSQLLEELKGH---- 922 (1178)
Q Consensus 852 ~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~-~h---~~~V~~~s~d~~~l~-sgs~dg~I~iwd~~t~~~~~~l~~h---- 922 (1178)
+++++++.+++|++||.. +.+....+. ++ ...-.+++++++.++ +++.++.|.+||+.+++.+..+...
T Consensus 2 ~~~v~~~~~~~v~~~d~~--~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~ 79 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTE--KMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE 79 (337)
T ss_dssp EEEEEEETTTEEEEEETT--TTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred cEEEEcCCCCeEEEEECC--CCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccc
Confidence 478999999999999976 344444444 33 233457899998765 5556789999999999988776632
Q ss_pred -CCceEEEEEe-CCCeEEEEe------------CCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeE
Q 001042 923 -DAQVSCVRML-SGERVLTAS------------HDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVA 988 (1178)
Q Consensus 923 -~~~V~~l~~~-~~~~l~sgs------------~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I 988 (1178)
...+.+++|+ +++.+++++ .++.|.+||+.+++.+..+.. ...+.+++|+|++++++++ ++.|
T Consensus 80 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i 156 (337)
T 1pby_B 80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDL 156 (337)
T ss_dssp EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSE
T ss_pred ccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeE
Confidence 2257788998 666888776 579999999999988877754 4567889999999988888 6889
Q ss_pred EEEECCCCceEEEEecCC--ccEEEEEEcCCEEEEEeC-CC-----------------------cEEEEEcCCCeee-eE
Q 001042 989 NIWDIRAGRQMHKFLGHT--KWIRSIRMDRDTVITGSD-DW-----------------------TARMWSISRGTCD-AV 1041 (1178)
Q Consensus 989 ~lwD~~~~~~~~~~~~~~--~~v~~l~~~~~~l~sgs~-dg-----------------------~I~iwd~~~~~~~-~~ 1041 (1178)
.+||+.+++....+..+. ..+ .+..++..++.++. ++ .|.+||+.+++.. ..
T Consensus 157 ~~~d~~~~~~~~~~~~~~~~~~~-~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~ 235 (337)
T 1pby_B 157 HVMDPEAGTLVEDKPIQSWEAET-YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMRE 235 (337)
T ss_dssp EEEETTTTEEEEEECSTTTTTTT-BCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEE
T ss_pred EEEECCCCcEeeeeeccccCCCc-eeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEee
Confidence 999999998887765443 222 22234443333322 22 4789999988764 23
Q ss_pred eccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecc-cCCcEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 001042 1042 LACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTI-HSSAILSINAGDHWLGIGAADNSMSLFHRPQE 1120 (1178)
Q Consensus 1042 ~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~-h~~~i~~is~dg~~Lasgs~Dg~I~iwd~~~~ 1120 (1178)
+..+...+.+++|+|+|++++++ ++.|.+||+.+++ ....+.. +...-.+++|+|+++++++.++.|.+||+.++
T Consensus 236 ~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~--~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~ 311 (337)
T 1pby_B 236 VRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNA--SIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL 311 (337)
T ss_dssp EEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTE--EEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTC
T ss_pred cCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCc--CcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEECcCC
Confidence 34566778899999999999988 7999999999884 4444432 33344567999999999999999999999854
No 149
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.78 E-value=1.1e-17 Score=186.39 Aligned_cols=249 Identities=9% Similarity=0.036 Sum_probs=188.3
Q ss_pred EEeCCCcEEEEcCCCCCceeeEeecccccceE--EEecCCCEEEEEeCCCcEEEEECCC-CcEEEEecCC-CCceEEEEE
Q 001042 856 SGSTDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKVVSGSDDQSVLVWDKQT-SQLLEELKGH-DAQVSCVRM 931 (1178)
Q Consensus 856 sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~--~~s~d~~~l~sgs~dg~I~iwd~~t-~~~~~~l~~h-~~~V~~l~~ 931 (1178)
+++.|++|++||+. +.+. ..+..|...+. +++|+++++++++ ++.|.+||+.+ ++.......+ ...+.+++|
T Consensus 17 ~~~~~~~i~~~d~~--~~~~-~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 92 (297)
T 2ojh_A 17 GGSMRSSIEIFNIR--TRKM-RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGI 92 (297)
T ss_dssp -CCCCEEEEEEETT--TTEE-EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEE
T ss_pred CCCcceeEEEEeCC--CCce-eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEE
Confidence 44678999999976 3333 34555777776 4689999999987 78999999999 8877666665 477899999
Q ss_pred e-CCCeEEEEe--CC--CeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEE-EEeCCCeEEEEECCC-CceEEEEec
Q 001042 932 L-SGERVLTAS--HD--GTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILA-AGGRDAVANIWDIRA-GRQMHKFLG 1004 (1178)
Q Consensus 932 ~-~~~~l~sgs--~d--g~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~-sgs~dg~I~lwD~~~-~~~~~~~~~ 1004 (1178)
+ ++..+++++ .+ ..|..|+..+++. ..+.. ...+..++|+|+++.++ +++.++.+.+|++.. +.....+..
T Consensus 93 spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~ 170 (297)
T 2ojh_A 93 SPDGALYAISDKVEFGKSAIYLLPSTGGTP-RLMTK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTH 170 (297)
T ss_dssp CTTSSEEEEEECTTTSSCEEEEEETTCCCC-EECCS-SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCC
T ss_pred CCCCCEEEEEEeCCCCcceEEEEECCCCce-EEeec-CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEccc
Confidence 9 778888888 33 4455555555553 33433 33589999999999887 677899999998642 334456667
Q ss_pred CCccEEEEEEcC--CEEEEEe-CCCcEEEEEcC-CCeeeeEeccCCCcEEEEEEecCCCEEEEEeCC-----------Cc
Q 001042 1005 HTKWIRSIRMDR--DTVITGS-DDWTARMWSIS-RGTCDAVLACHAGPVQCVEYSSSDRGIITGSSD-----------GL 1069 (1178)
Q Consensus 1005 ~~~~v~~l~~~~--~~l~sgs-~dg~I~iwd~~-~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~D-----------g~ 1069 (1178)
+...+.+++|++ +.++.++ .++.+++|++. .+.....+..|...+.+++|+|+|++|++++.+ +.
T Consensus 171 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~ 250 (297)
T 2ojh_A 171 GEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVR 250 (297)
T ss_dssp SSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEE
T ss_pred CCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceE
Confidence 788899999954 4666655 58999999986 566677788888899999999999999988866 56
Q ss_pred EEEEECCCCceEEEEEecccCCcEE--EEecCCCEEEEEeCCC
Q 001042 1070 LRFWENDDGGIKCVKNVTIHSSAIL--SINAGDHWLGIGAADN 1110 (1178)
Q Consensus 1070 I~iwd~~~~~~~~~~~~~~h~~~i~--~is~dg~~Lasgs~Dg 1110 (1178)
|.+||+.+++...+....+|...+. +++|+|++|++++.+.
T Consensus 251 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 251 VQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 9999999987666666666766654 4589999999887654
No 150
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.78 E-value=6.3e-18 Score=209.56 Aligned_cols=263 Identities=8% Similarity=-0.045 Sum_probs=195.5
Q ss_pred cceEEEEecCCCCccccccc-c--eeecccccccCCCCCCCCCCCcCCcccccceEEecccc-cceEEEEeeeccceecc
Q 001042 769 RSWVQSMFSREASSRSHSFS-R--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHA-GAITALHCVTKREVWDL 844 (1178)
Q Consensus 769 ~~i~~~aFSpdg~~las~~~-d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~-~~V~~l~fs~~~~~~~~ 844 (1178)
.++..++|||||+.||+++. + ++||+++++. .+.+..|. ..|.+++|+
T Consensus 22 ~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~--------------------~~~lt~~~~~~~~~~~~s-------- 73 (582)
T 3o4h_A 22 VEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGE--------------------TVKLNREPINSVLDPHYG-------- 73 (582)
T ss_dssp SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTE--------------------EEECCSSCCSEECEECTT--------
T ss_pred cchheeecCCCCCeEEEEEccCCceeEEEEcCCC--------------------cEeeecccccccccccCC--------
Confidence 46888899999999999876 5 9999986555 33344454 688888887
Q ss_pred ccccCCCCEEEEEeC---CCcEEEEcCCC--CCceeeEeecccccceEEEecCCCE-EEEEeCCCcEEEEECCCCcEEEE
Q 001042 845 VGDREDAGFFISGST---DCLVKIWDPSL--RGSELRATLKGHTRTVRAINSDRGK-VVSGSDDQSVLVWDKQTSQLLEE 918 (1178)
Q Consensus 845 ~~~s~d~~~Lasgs~---Dg~I~iWd~~~--~~~~~~~~l~~h~~~V~~~s~d~~~-l~sgs~dg~I~iwd~~t~~~~~~ 918 (1178)
|| +++++++. +...++|.++. .+... .....+...+.+++++++. +++++.++.+.+||+.+++....
T Consensus 74 ----pd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l 147 (582)
T 3o4h_A 74 ----VG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLREL 147 (582)
T ss_dssp ----CS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEE
T ss_pred ----CC-eEEEEeccCCCCcceEEEEEeccCCCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEe
Confidence 77 77777765 45567765543 23322 2222333346688999864 34444455566999999876655
Q ss_pred ecCCCCceEEEEEe-CCCeEEEEeCC----CeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCC--eEEEE
Q 001042 919 LKGHDAQVSCVRML-SGERVLTASHD----GTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDA--VANIW 991 (1178)
Q Consensus 919 l~~h~~~V~~l~~~-~~~~l~sgs~d----g~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg--~I~lw 991 (1178)
...+. .+++|+ +|+.+++++.+ +.|++||+.+++.. .+..+...+..++|+|||+.|+++..+| .|++|
T Consensus 148 ~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~ 223 (582)
T 3o4h_A 148 ARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTV 223 (582)
T ss_dssp EEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEE
T ss_pred ecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEE
Confidence 44333 788888 88889988777 78999999988765 5567788899999999999999888888 89999
Q ss_pred ECCCCceEEEEecCCccEEEEE--------Ec--CCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEE
Q 001042 992 DIRAGRQMHKFLGHTKWIRSIR--------MD--RDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGI 1061 (1178)
Q Consensus 992 D~~~~~~~~~~~~~~~~v~~l~--------~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L 1061 (1178)
|+.+++.. .+.++...+..++ |+ +..+++++.||++++|++ ++... ...+.+.+++|+ +++.+
T Consensus 224 d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l 296 (582)
T 3o4h_A 224 DPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLV 296 (582)
T ss_dssp CTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEE
T ss_pred cCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEE
Confidence 99998887 6667766665555 74 458889999999999999 66554 345678999999 99999
Q ss_pred EEEeCCCc---EEEEECC
Q 001042 1062 ITGSSDGL---LRFWEND 1076 (1178)
Q Consensus 1062 ~sgs~Dg~---I~iwd~~ 1076 (1178)
++++.+.+ +.+||..
T Consensus 297 ~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 297 TSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp EEEEETTEEEEEEEETTC
T ss_pred EEEcCCCCCCeEEEEcCC
Confidence 88887754 5566554
No 151
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.77 E-value=1.2e-17 Score=212.56 Aligned_cols=312 Identities=9% Similarity=0.053 Sum_probs=211.7
Q ss_pred cCCCCEEEEEeCCCcEEEEcCCCCCceeeEeeccccc-----ceEEEecCCCEEEEEeC---------CCcEEEEECCCC
Q 001042 848 REDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTR-----TVRAINSDRGKVVSGSD---------DQSVLVWDKQTS 913 (1178)
Q Consensus 848 s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~-----~V~~~s~d~~~l~sgs~---------dg~I~iwd~~t~ 913 (1178)
+|||+++++ +.||+|++||+. +.+....+.+|.. ...++||||++|++++. ++.|++||+.++
T Consensus 24 s~dg~~~~~-~~d~~i~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g 100 (719)
T 1z68_A 24 ISGQEYLHQ-SADNNIVLYNIE--TGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNG 100 (719)
T ss_dssp SSSSEEEEE-CTTSCEEEEESS--SCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT
T ss_pred CCCCeEEEE-cCCCCEEEEEcC--CCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCC
Confidence 388965554 569999999976 4444455555532 33468999999998876 789999999998
Q ss_pred cEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEe-cCCCCCE-----------------EEEEEeC
Q 001042 914 QLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATV-GRCSSAV-----------------LCMEYDD 974 (1178)
Q Consensus 914 ~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~-~~~~~~I-----------------~~l~~sp 974 (1178)
+.+.... ....+..++|+ +|+.++.+. ++.|++||+.+++..... .++...+ .+++|+|
T Consensus 101 ~~~~~~~-l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP 178 (719)
T 1z68_A 101 EFVRGNE-LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP 178 (719)
T ss_dssp EECCSSC-CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT
T ss_pred cccccee-cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC
Confidence 7631111 13568899999 677787775 789999999988765433 2222222 4899999
Q ss_pred CCCEEEEEeCCC----------------------------------eEEEEECCCCceE--EE------EecCCccEEEE
Q 001042 975 STGILAAGGRDA----------------------------------VANIWDIRAGRQM--HK------FLGHTKWIRSI 1012 (1178)
Q Consensus 975 ~~~~l~sgs~dg----------------------------------~I~lwD~~~~~~~--~~------~~~~~~~v~~l 1012 (1178)
||+.|++++.|. .|++||+.+++.. .. +.+|...+.++
T Consensus 179 DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (719)
T 1z68_A 179 NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWL 258 (719)
T ss_dssp TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEE
T ss_pred CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEe
Confidence 999999987552 7899999987653 11 23577789999
Q ss_pred EEcCC--EEEEEeCC----CcEEEEE----cCCCeeeeEe----ccCCCcEE-----EEEEecCCCEEEE--EeCCC--c
Q 001042 1013 RMDRD--TVITGSDD----WTARMWS----ISRGTCDAVL----ACHAGPVQ-----CVEYSSSDRGIIT--GSSDG--L 1069 (1178)
Q Consensus 1013 ~~~~~--~l~sgs~d----g~I~iwd----~~~~~~~~~~----~~h~~~I~-----~l~~spdg~~L~s--gs~Dg--~ 1069 (1178)
+|+++ .+++.... ..|.+|| ..++++...+ .+|.+.+. .+.|+|||+.++. +..+| .
T Consensus 259 ~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~ 338 (719)
T 1z68_A 259 TWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKH 338 (719)
T ss_dssp EESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEE
T ss_pred EEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceE
Confidence 99655 44443322 2488899 8888776555 46777776 8899999996654 44555 4
Q ss_pred EEEEECCCCceEEEEEecccCCcEEEE--ecCCCEEEEEeCC-----CcEEEEEcCCCccccccCCCCCccceeEee-cc
Q 001042 1070 LRFWENDDGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAAD-----NSMSLFHRPQERLGGFSGTGSKMSGWQLYR-TP 1141 (1178)
Q Consensus 1070 I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~dg~~Lasgs~D-----g~I~iwd~~~~~~~~~~~~g~~~~~~~~~~-~~ 1141 (1178)
|.+||+.+++ ...+..+...+..+ + +++.++..+.+ +..++|.+... +|.. ..+.+. .+
T Consensus 339 l~~~~~~~~~---~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~-------~g~~--~~~~l~~~~ 405 (719)
T 1z68_A 339 IHYIKDTVEN---AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIG-------SYPP--SKKCVTCHL 405 (719)
T ss_dssp EEEESSCSTT---CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECS-------SSSC--CEEESSTTT
T ss_pred EEEEECCCCc---eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCC-------CCCC--CceeccCcc
Confidence 6667777664 23444444444332 5 77777776655 88999987631 1110 001211 12
Q ss_pred CCCcccEEEEEEcCCCCEEEEE-eCC--CcEEEEECCCC
Q 001042 1142 QKTVAVVRCIASDLERKRICSG-GRN--GLLRLWEATIN 1177 (1178)
Q Consensus 1142 ~~h~~~V~~lafspdg~~Las~-s~D--g~V~IWdv~tg 1177 (1178)
.+|...+..+.|+|||++++.. +.+ ..+.+||+.+|
T Consensus 406 ~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g 444 (719)
T 1z68_A 406 RKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTD 444 (719)
T ss_dssp TTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSC
T ss_pred CCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCC
Confidence 3466678899999999987743 333 46889998776
No 152
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.77 E-value=1.7e-16 Score=182.63 Aligned_cols=264 Identities=13% Similarity=0.173 Sum_probs=179.5
Q ss_pred CCcEEEEEC--CCCcEEE-EecCCCCceEEEEEeCCCeEEEEeC---CCeEEEEeCCCCe--EEEEecCCCCCEEEEEEe
Q 001042 902 DQSVLVWDK--QTSQLLE-ELKGHDAQVSCVRMLSGERVLTASH---DGTVKMWDVRTDT--CVATVGRCSSAVLCMEYD 973 (1178)
Q Consensus 902 dg~I~iwd~--~t~~~~~-~l~~h~~~V~~l~~~~~~~l~sgs~---dg~V~iwd~~~~~--~~~~~~~~~~~I~~l~~s 973 (1178)
++.|.+|++ .+++... ....+...+..++|+++..+++++. ++.|.+||+.+++ .+..+..+...+..++|+
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~s 94 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVD 94 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEEC
Confidence 456777765 4565433 2334556778899994443666654 6899999998776 344444456778899999
Q ss_pred CCCCEEEEEe-CCCeEEEEECCC-Cc--eEEEEecC---------CccEEEEEEc--CCEEEEEeCCCcEEEEEcC-CCe
Q 001042 974 DSTGILAAGG-RDAVANIWDIRA-GR--QMHKFLGH---------TKWIRSIRMD--RDTVITGSDDWTARMWSIS-RGT 1037 (1178)
Q Consensus 974 p~~~~l~sgs-~dg~I~lwD~~~-~~--~~~~~~~~---------~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~-~~~ 1037 (1178)
|+|+++++++ .++.+.+||+.. +. .+..+... ...+.+++++ ++.+++...++.|++||+. +++
T Consensus 95 pdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~ 174 (347)
T 3hfq_A 95 EARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQ 174 (347)
T ss_dssp TTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSC
T ss_pred CCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCc
Confidence 9999888888 689999999963 32 23333221 2247788885 4566666678899999998 454
Q ss_pred eee--EeccC-CCcEEEEEEecCCCEEEE-EeCCCcEEEEECCC--CceEEEEEecccCC------cE--EEEecCCCEE
Q 001042 1038 CDA--VLACH-AGPVQCVEYSSSDRGIIT-GSSDGLLRFWENDD--GGIKCVKNVTIHSS------AI--LSINAGDHWL 1103 (1178)
Q Consensus 1038 ~~~--~~~~h-~~~I~~l~~spdg~~L~s-gs~Dg~I~iwd~~~--~~~~~~~~~~~h~~------~i--~~is~dg~~L 1103 (1178)
... .+..+ ...+..++|+|||+++++ +..++.|.+|+++. ++............ .+ .+++|||++|
T Consensus 175 ~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l 254 (347)
T 3hfq_A 175 LSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFL 254 (347)
T ss_dssp EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEE
T ss_pred EEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEE
Confidence 322 22222 336788999999996665 55788999999874 54444444433321 23 4568999987
Q ss_pred -EEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCC-CcEEEE--ECCCC
Q 001042 1104 -GIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRN-GLLRLW--EATIN 1177 (1178)
Q Consensus 1104 -asgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~D-g~V~IW--dv~tg 1177 (1178)
+++..++.|.+|++... | .++.......+...+.+++|+|||++|++++.+ +.|.+| |..+|
T Consensus 255 ~v~~~~~~~v~v~~~~~~--------g----~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg 320 (347)
T 3hfq_A 255 YVSNRGYNTLAVFAVTAD--------G----HLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSG 320 (347)
T ss_dssp EEEEETTTEEEEEEECGG--------G----CEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred EEEeCCCCEEEEEEECCC--------C----cEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCC
Confidence 55566899999998621 1 113444444555668899999999999888765 899999 44555
No 153
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.74 E-value=1.4e-17 Score=211.99 Aligned_cols=311 Identities=9% Similarity=0.040 Sum_probs=212.6
Q ss_pred EEEecCCCCcccccccc-eeecccccccCCCCCCCCCCCcCCcccccceEEeccccc---ceEEEEeeeccceecccccc
Q 001042 773 QSMFSREASSRSHSFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAG---AITALHCVTKREVWDLVGDR 848 (1178)
Q Consensus 773 ~~aFSpdg~~las~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~---~V~~l~fs~~~~~~~~~~~s 848 (1178)
.++|||||++++++.+. |++||+++++ ....+.+|.. .|.+++||
T Consensus 20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~-------------------~~~~~~~~~~~~~~~~~~~~S------------ 68 (719)
T 1z68_A 20 FPNWISGQEYLHQSADNNIVLYNIETGQ-------------------SYTILSNRTMKSVNASNYGLS------------ 68 (719)
T ss_dssp CCEESSSSEEEEECTTSCEEEEESSSCC-------------------EEEEECHHHHHTTTCSEEEEC------------
T ss_pred ccEECCCCeEEEEcCCCCEEEEEcCCCc-------------------EEEEEccccccccceeeEEEC------------
Confidence 56999999877776544 9999999887 5666666655 48899998
Q ss_pred CCCCEEEEEeC---------CCcEEEEcCCCCCceee--EeecccccceEEEecCCCEEEEEeCCCcEEEEECCCCcEEE
Q 001042 849 EDAGFFISGST---------DCLVKIWDPSLRGSELR--ATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLE 917 (1178)
Q Consensus 849 ~d~~~Lasgs~---------Dg~I~iWd~~~~~~~~~--~~l~~h~~~V~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~ 917 (1178)
|||++|++++. |+.|++||+.. .+.. ..+. ....-.+|||||+.|+++. ++.|++||+.+++...
T Consensus 69 pDg~~la~~~~~~~~~~~s~~~~i~~~d~~~--g~~~~~~~l~-~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~ 144 (719)
T 1z68_A 69 PDRQFVYLESDYSKLWRYSYTATYYIYDLSN--GEFVRGNELP-RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQ 144 (719)
T ss_dssp TTSSEEEEEEEEEECSSSCEEEEEEEEETTT--TEECCSSCCC-SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEE
T ss_pred CCCCeEEEEecCceeEEeecceEEEEEECCC--CccccceecC-cccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEE
Confidence 99999999876 78999999872 3221 1222 1222347899999999986 6899999999887654
Q ss_pred Ee-cCCCCce-----------------EEEEEe-CCCeEEEEeCCC----------------------------------
Q 001042 918 EL-KGHDAQV-----------------SCVRML-SGERVLTASHDG---------------------------------- 944 (1178)
Q Consensus 918 ~l-~~h~~~V-----------------~~l~~~-~~~~l~sgs~dg---------------------------------- 944 (1178)
.. .++...| .+++|+ +++.|++++.|.
T Consensus 145 l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~ 224 (719)
T 1z68_A 145 ITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVV 224 (719)
T ss_dssp CCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEE
T ss_pred EecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCee
Confidence 32 2222222 489999 788898887552
Q ss_pred eEEEEeCCCCeEE---EE-----ecCCCCCEEEEEEeCCCCEEEEEeCC----CeEEEEE----CCCCceEEEE----ec
Q 001042 945 TVKMWDVRTDTCV---AT-----VGRCSSAVLCMEYDDSTGILAAGGRD----AVANIWD----IRAGRQMHKF----LG 1004 (1178)
Q Consensus 945 ~V~iwd~~~~~~~---~~-----~~~~~~~I~~l~~sp~~~~l~sgs~d----g~I~lwD----~~~~~~~~~~----~~ 1004 (1178)
.|++||+.+++.. .. +..+...+.+++|+||++++++.... ..|.+|| ..+++....+ .+
T Consensus 225 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~ 304 (719)
T 1z68_A 225 RIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEES 304 (719)
T ss_dssp EEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEEC
T ss_pred EEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEeccccc
Confidence 7899999887642 11 23467789999999998777764432 3488999 8777655444 35
Q ss_pred CCccEE-----EEEEc--CCEEE--EEeCCC--cEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCC-----C
Q 001042 1005 HTKWIR-----SIRMD--RDTVI--TGSDDW--TARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSD-----G 1068 (1178)
Q Consensus 1005 ~~~~v~-----~l~~~--~~~l~--sgs~dg--~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~D-----g 1068 (1178)
|...+. .++|+ ++.++ ++..+| .|.+||+.+++ ...+..+...+..+.++ +++.++..+.+ +
T Consensus 305 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~ 382 (719)
T 1z68_A 305 RTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPG 382 (719)
T ss_dssp SSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTT
T ss_pred CCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCc
Confidence 666665 67774 44443 344555 46777876665 45566566678888888 88887777665 7
Q ss_pred cEEEEECCC--CceEEEEEec----ccCCcE--EEEecCCCEEEEE-eCC--CcEEEEEcCCCc
Q 001042 1069 LLRFWENDD--GGIKCVKNVT----IHSSAI--LSINAGDHWLGIG-AAD--NSMSLFHRPQER 1121 (1178)
Q Consensus 1069 ~I~iwd~~~--~~~~~~~~~~----~h~~~i--~~is~dg~~Lasg-s~D--g~I~iwd~~~~~ 1121 (1178)
..++|.+.. +... ...+. +|...+ .++++++++++.. +.+ ..+.+||+.+++
T Consensus 383 ~~~l~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 383 RRNIYRISIGSYPPS-KKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp CBEEEEEECSSSSCC-EEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred eEEEEEEeCCCCCCC-ceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCC
Confidence 889998764 3211 12222 243333 4568888877753 333 468899886554
No 154
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.74 E-value=3.1e-15 Score=173.16 Aligned_cols=290 Identities=13% Similarity=0.128 Sum_probs=190.8
Q ss_pred CCEEEEEe----CCCcEEEEcCCCCCcee--eEeecccccceEEEecCCCEEEEEeCC----CcEEEEECCC--CcE--E
Q 001042 851 AGFFISGS----TDCLVKIWDPSLRGSEL--RATLKGHTRTVRAINSDRGKVVSGSDD----QSVLVWDKQT--SQL--L 916 (1178)
Q Consensus 851 ~~~Lasgs----~Dg~I~iWd~~~~~~~~--~~~l~~h~~~V~~~s~d~~~l~sgs~d----g~I~iwd~~t--~~~--~ 916 (1178)
..+++.|+ .++.|.+|+++..+..+ ..........-.+++|+|++|++++.+ +.|.+|++.. ++. +
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~ 92 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL 92 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe
Confidence 44555553 46789999875333333 222322222334789999999999886 7999998865 433 3
Q ss_pred EEecCCCCceEEEEEeCCCeEEEEe-CCCeEEEEeCCCCeEEEE------ecC--------CCCCEEEEEEeCCCCEEEE
Q 001042 917 EELKGHDAQVSCVRMLSGERVLTAS-HDGTVKMWDVRTDTCVAT------VGR--------CSSAVLCMEYDDSTGILAA 981 (1178)
Q Consensus 917 ~~l~~h~~~V~~l~~~~~~~l~sgs-~dg~V~iwd~~~~~~~~~------~~~--------~~~~I~~l~~sp~~~~l~s 981 (1178)
.....+......+++ +++.+++++ .++.|.+|++.....+.. ..+ +...+.+++|+|+|+++++
T Consensus 93 ~~~~~~~~~p~~~~~-dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~ 171 (361)
T 3scy_A 93 NTQKTMGADPCYLTT-NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLA 171 (361)
T ss_dssp EEEECSSSCEEEEEE-CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEE
T ss_pred eEeccCCCCcEEEEE-CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEE
Confidence 344445667778888 788777766 688999999975432211 111 1234688999999997766
Q ss_pred Ee-CCCeEEEEECCCCce------E-------EEEecCCccEEEEEEcC--CEEEEEe-CCCcEEEEEcCCCee--eeEe
Q 001042 982 GG-RDAVANIWDIRAGRQ------M-------HKFLGHTKWIRSIRMDR--DTVITGS-DDWTARMWSISRGTC--DAVL 1042 (1178)
Q Consensus 982 gs-~dg~I~lwD~~~~~~------~-------~~~~~~~~~v~~l~~~~--~~l~sgs-~dg~I~iwd~~~~~~--~~~~ 1042 (1178)
++ .++.|.+|++..... + .........+..++|++ +++++++ .++.|.+||+.+++. +..+
T Consensus 172 ~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~ 251 (361)
T 3scy_A 172 DDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTV 251 (361)
T ss_dssp EETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEE
T ss_pred EeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEE
Confidence 55 478999998875431 1 11223445678889855 4676666 689999999987754 2222
Q ss_pred c---cCCCcEEEEEEecCCCEEEEEeC--CCcEEEEECC--CCceEEEEEecc-cCCcEEEEecCCCEEEEEe-CCCcEE
Q 001042 1043 A---CHAGPVQCVEYSSSDRGIITGSS--DGLLRFWEND--DGGIKCVKNVTI-HSSAILSINAGDHWLGIGA-ADNSMS 1113 (1178)
Q Consensus 1043 ~---~h~~~I~~l~~spdg~~L~sgs~--Dg~I~iwd~~--~~~~~~~~~~~~-h~~~i~~is~dg~~Lasgs-~Dg~I~ 1113 (1178)
. .+.....+++|+|||++|+++.. ++.|.+|+++ ++....+..+.. ....-.+++|+|++|++++ .++.|.
T Consensus 252 ~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~ 331 (361)
T 3scy_A 252 AADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQ 331 (361)
T ss_dssp ESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEE
T ss_pred ecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEE
Confidence 2 23345789999999999877665 4899999996 555555555443 2233467799999988887 678999
Q ss_pred EEEcCCCccccccCCCCCccceeEeecc-CCCcccEEEEEEc
Q 001042 1114 LFHRPQERLGGFSGTGSKMSGWQLYRTP-QKTVAVVRCIASD 1154 (1178)
Q Consensus 1114 iwd~~~~~~~~~~~~g~~~~~~~~~~~~-~~h~~~V~~lafs 1154 (1178)
+|++... +| ++.... ..+...+.|++|.
T Consensus 332 v~~~d~~-------~g------~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 332 IFERDQA-------TG------LLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEEECTT-------TC------CEEECSCCEECSSEEEEEEE
T ss_pred EEEEECC-------CC------cEeecceeeeCCCCeEEEEc
Confidence 9876522 22 222111 2344568888886
No 155
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.72 E-value=5.9e-16 Score=177.44 Aligned_cols=266 Identities=10% Similarity=0.038 Sum_probs=180.7
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCC-CceEEEEEe-CCCeEE-EEeCCCeEEEEeCCCCeEEEEecCCC-
Q 001042 889 INSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHD-AQVSCVRML-SGERVL-TASHDGTVKMWDVRTDTCVATVGRCS- 964 (1178)
Q Consensus 889 ~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~-~~V~~l~~~-~~~~l~-sgs~dg~V~iwd~~~~~~~~~~~~~~- 964 (1178)
+++++..+++++.+++|.+||..+++.+..+..+. ..+..++|+ +++.++ ++..++.|.+||+.+++....+....
T Consensus 7 ~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~ 86 (349)
T 1jmx_B 7 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSV 86 (349)
T ss_dssp CCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCS
T ss_pred ccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccc
Confidence 56778889999999999999999999988877543 257788898 566554 55578999999999999887765332
Q ss_pred -----CCEEEEEEeCCCCEEEEEeCC------------CeEEEEECCCCce---EEEEecCCccEEEEEEc--CCEEEEE
Q 001042 965 -----SAVLCMEYDDSTGILAAGGRD------------AVANIWDIRAGRQ---MHKFLGHTKWIRSIRMD--RDTVITG 1022 (1178)
Q Consensus 965 -----~~I~~l~~sp~~~~l~sgs~d------------g~I~lwD~~~~~~---~~~~~~~~~~v~~l~~~--~~~l~sg 1022 (1178)
..+.+++|+|+|+++++++.+ +.|.+||+.+++. +..+. +...+.+++++ ++ ++++
T Consensus 87 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~ 164 (349)
T 1jmx_B 87 PGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVA 164 (349)
T ss_dssp TTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEE
T ss_pred cccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEc
Confidence 236789999999999998865 8999999988543 33443 33457788884 44 5555
Q ss_pred eCCCcEEEEEcCCCeeeeEeccCCC------------------------cEEEEEEecCCCEEEEEe-CCCcEEEEECCC
Q 001042 1023 SDDWTARMWSISRGTCDAVLACHAG------------------------PVQCVEYSSSDRGIITGS-SDGLLRFWENDD 1077 (1178)
Q Consensus 1023 s~dg~I~iwd~~~~~~~~~~~~h~~------------------------~I~~l~~spdg~~L~sgs-~Dg~I~iwd~~~ 1077 (1178)
+ +.|.+||..+++....+..+.. ...++++++++....... ....+..+|..+
T Consensus 165 ~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 242 (349)
T 1jmx_B 165 G--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKT 242 (349)
T ss_dssp S--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTT
T ss_pred c--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccC
Confidence 4 3499999999988777653320 334566665542211100 011122355555
Q ss_pred CceEEEEEecccCCcE--EEEec-CCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEc
Q 001042 1078 GGIKCVKNVTIHSSAI--LSINA-GDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASD 1154 (1178)
Q Consensus 1078 ~~~~~~~~~~~h~~~i--~~is~-dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafs 1154 (1178)
++..... ...+...+ .+++| +|++++++ ++.|.+||+.++ +...... ....+.+++|+
T Consensus 243 ~~~~~~~-~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~---------------~~~~~~~-~~~~~~~~~~s 303 (349)
T 1jmx_B 243 GKTHTQE-FADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQR---------------KLIKAAN-LDHTYYCVAFD 303 (349)
T ss_dssp CCEEEEE-EEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTT---------------EEEEEEE-CSSCCCEEEEC
T ss_pred CcEEecc-cccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccC---------------eEEEEEc-CCCCccceEEC
Confidence 5432222 12233333 45589 99999988 889999999743 2222221 12236789999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCC
Q 001042 1155 LERKRICSGGRNGLLRLWEATIN 1177 (1178)
Q Consensus 1155 pdg~~Las~s~Dg~V~IWdv~tg 1177 (1178)
|||++|++++.++.|++||++++
T Consensus 304 ~dg~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 304 KKGDKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp SSSSCEEEESBSSEEEEEETTTT
T ss_pred CCCCEEEEecCCCeEEEEecccc
Confidence 99999998989999999999876
No 156
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.72 E-value=4.2e-16 Score=193.18 Aligned_cols=268 Identities=11% Similarity=0.056 Sum_probs=191.4
Q ss_pred eEEecc-cccceEEEEeeeccceeccccccCCCCEEEEEeC-CCcEEEEcCCCCCceeeEeecccc-cceEE--EecCCC
Q 001042 820 IRIIRG-HAGAITALHCVTKREVWDLVGDREDAGFFISGST-DCLVKIWDPSLRGSELRATLKGHT-RTVRA--INSDRG 894 (1178)
Q Consensus 820 ~~~l~g-H~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~-Dg~I~iWd~~~~~~~~~~~l~~h~-~~V~~--~s~d~~ 894 (1178)
++.+.. +..+|++++|+ +||+.||+++. ||+++||+++ +..... +..|. ..+.+ ++|| +
T Consensus 13 ~~~~~~~~~~~~~~~~~~------------~DG~~la~~s~~~g~~~lw~~~--~g~~~~-lt~~~~~~~~~~~~spd-~ 76 (582)
T 3o4h_A 13 VRDVERLIAVEKYSLQGV------------VDGDKLLVVGFSEGSVNAYLYD--GGETVK-LNREPINSVLDPHYGVG-R 76 (582)
T ss_dssp HHHHHHHHHSCEEEEEEE------------ETTTEEEEEEEETTEEEEEEEE--TTEEEE-CCSSCCSEECEECTTCS-E
T ss_pred HHHHHHHhccchheeecC------------CCCCeEEEEEccCCceeEEEEc--CCCcEe-eecccccccccccCCCC-e
Confidence 334443 36689999998 89999999887 9999999974 444433 44444 45654 4777 6
Q ss_pred EEEEEeC---CCcEEEEECCC---CcEEEEecCCCCceEEEEEe-CC-CeEEEEeCCCeEEEEeCCCCeEEEEecCCCCC
Q 001042 895 KVVSGSD---DQSVLVWDKQT---SQLLEELKGHDAQVSCVRML-SG-ERVLTASHDGTVKMWDVRTDTCVATVGRCSSA 966 (1178)
Q Consensus 895 ~l~sgs~---dg~I~iwd~~t---~~~~~~l~~h~~~V~~l~~~-~~-~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~ 966 (1178)
.+++++. +....+|.+.. +... .+..+. .+...+|+ ++ ..+++.+.++.+.+||+.+++.......+.
T Consensus 77 ~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~-- 152 (582)
T 3o4h_A 77 VILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG-- 152 (582)
T ss_dssp EEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--
T ss_pred EEEEeccCCCCcceEEEEEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--
Confidence 6776664 45556655432 3332 443222 23355666 44 344454555555699999998765554333
Q ss_pred EEEEEEeCCCCEEEEEeCC----CeEEEEECCCCceEEEEecCCccEEEEEEc--CCEEEEEeCCC--cEEEEEcCCCee
Q 001042 967 VLCMEYDDSTGILAAGGRD----AVANIWDIRAGRQMHKFLGHTKWIRSIRMD--RDTVITGSDDW--TARMWSISRGTC 1038 (1178)
Q Consensus 967 I~~l~~sp~~~~l~sgs~d----g~I~lwD~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sgs~dg--~I~iwd~~~~~~ 1038 (1178)
.+++|+|||+.+++++.+ +.|++||+.+++.. .+..+...+..++|+ ++.|+++..+| .|++||+.+++.
T Consensus 153 -~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~ 230 (582)
T 3o4h_A 153 -FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSV 230 (582)
T ss_dssp -CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCE
T ss_pred -ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcE
Confidence 789999999999988776 78999999988765 667888889999995 45888888888 899999999888
Q ss_pred eeEeccCCCcEEEEE--------EecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEE--EEecCCCEEEEEeC
Q 001042 1039 DAVLACHAGPVQCVE--------YSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAIL--SINAGDHWLGIGAA 1108 (1178)
Q Consensus 1039 ~~~~~~h~~~I~~l~--------~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~--~is~dg~~Lasgs~ 1108 (1178)
. .+.+|...+..++ |+|||..+++++.||++++|++ | .... .....+. +++ +++++++++.
T Consensus 231 ~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g--~~~~---~~~~~v~~~~~s-dg~~l~~~s~ 301 (582)
T 3o4h_A 231 E-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--G--ERVE---APQGNHGRVVLW-RGKLVTSHTS 301 (582)
T ss_dssp E-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--T--EEEC---CCSSEEEEEEEE-TTEEEEEEEE
T ss_pred E-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--C--Ceec---cCCCceEEEEec-CCEEEEEEcC
Confidence 7 7777877777777 9999988999999999999999 5 3332 2234443 457 8999998887
Q ss_pred CCc---EEEEEcC
Q 001042 1109 DNS---MSLFHRP 1118 (1178)
Q Consensus 1109 Dg~---I~iwd~~ 1118 (1178)
+.+ +.+||..
T Consensus 302 ~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 302 LSTPPRIVSLPSG 314 (582)
T ss_dssp TTEEEEEEEETTC
T ss_pred CCCCCeEEEEcCC
Confidence 754 6666654
No 157
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.72 E-value=3.8e-16 Score=185.82 Aligned_cols=209 Identities=14% Similarity=0.154 Sum_probs=160.2
Q ss_pred CcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEEeCCCcEEEEECCCC----------cEEEE-----ecCCCCc
Q 001042 861 CLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTS----------QLLEE-----LKGHDAQ 925 (1178)
Q Consensus 861 g~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sgs~dg~I~iwd~~t~----------~~~~~-----l~~h~~~ 925 (1178)
+.+++|+.. .. +........++++++.++++++.++ +++|+.... ..+.. ...+...
T Consensus 23 ~~vri~~~~--~~-----~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 2oit_A 23 KKVRIFDSP--EE-----LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP 94 (434)
T ss_dssp CEEECSCCC--SS-----CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred eeEEecCCc--cc-----cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence 568998743 11 2223455668899999999999988 889875311 01111 1135678
Q ss_pred eEEEEEe-CCCeEE----EEeCCCeEEEEeCCCC--------e---EEEEecCCCCCEEEEEEeCC-CCEEEEEeCCCeE
Q 001042 926 VSCVRML-SGERVL----TASHDGTVKMWDVRTD--------T---CVATVGRCSSAVLCMEYDDS-TGILAAGGRDAVA 988 (1178)
Q Consensus 926 V~~l~~~-~~~~l~----sgs~dg~V~iwd~~~~--------~---~~~~~~~~~~~I~~l~~sp~-~~~l~sgs~dg~I 988 (1178)
|.+++|+ ++++++ +|+.|++|++||+.++ + ....+.+|...|.+++|+|+ +.++++++.||.|
T Consensus 95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v 174 (434)
T 2oit_A 95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSI 174 (434)
T ss_dssp EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCE
T ss_pred ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeE
Confidence 9999999 678888 6788999999998654 2 24555678899999999997 8899999999999
Q ss_pred EEEECCCCceEEEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCeeeeEeccC-------CCcEEEEEEecCCC
Q 001042 989 NIWDIRAGRQMHKFLGHTKWIRSIRMD--RDTVITGSDDWTARMWSISRGTCDAVLACH-------AGPVQCVEYSSSDR 1059 (1178)
Q Consensus 989 ~lwD~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h-------~~~I~~l~~spdg~ 1059 (1178)
++||++++..+....+|...|.+++|+ +++|++|+.||.|++||.+ ++....+..| ...|.+++|++++.
T Consensus 175 ~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~ 253 (434)
T 2oit_A 175 AVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYV 253 (434)
T ss_dssp EEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTE
T ss_pred EEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCce
Confidence 999999998777777899999999995 5599999999999999998 5555555443 23899999999888
Q ss_pred EEEEEe-CCCc------EEEEECCCC
Q 001042 1060 GIITGS-SDGL------LRFWENDDG 1078 (1178)
Q Consensus 1060 ~L~sgs-~Dg~------I~iwd~~~~ 1078 (1178)
++++.+ .||. +++|++...
T Consensus 254 ~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 254 FAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred EEEEEccCCCccCCCCceEEEEeccC
Confidence 775533 4433 899999865
No 158
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.72 E-value=4.3e-15 Score=172.00 Aligned_cols=268 Identities=10% Similarity=0.115 Sum_probs=179.4
Q ss_pred CEEEEEe----CCCcEEEEEC--CCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCC----CeEEEEeCCC--CeE--EE
Q 001042 894 GKVVSGS----DDQSVLVWDK--QTSQLLEELKGHDAQVSCVRML-SGERVLTASHD----GTVKMWDVRT--DTC--VA 958 (1178)
Q Consensus 894 ~~l~sgs----~dg~I~iwd~--~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~d----g~V~iwd~~~--~~~--~~ 958 (1178)
.++++|+ .++.|.+|++ .+++.......+......++|+ +++.+++++.+ +.|.+|++.. ++. +.
T Consensus 14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~ 93 (361)
T 3scy_A 14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLN 93 (361)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEE
T ss_pred eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEee
Confidence 3455553 4568899866 5565433222267778889999 67778888875 8999998865 443 33
Q ss_pred EecCCCCCEEEEEEeCCCCEEEEEe-CCCeEEEEECCCCceEEEE------ec--------CCccEEEEEEcC--CEEEE
Q 001042 959 TVGRCSSAVLCMEYDDSTGILAAGG-RDAVANIWDIRAGRQMHKF------LG--------HTKWIRSIRMDR--DTVIT 1021 (1178)
Q Consensus 959 ~~~~~~~~I~~l~~sp~~~~l~sgs-~dg~I~lwD~~~~~~~~~~------~~--------~~~~v~~l~~~~--~~l~s 1021 (1178)
....+......+++ +++.+++++ .++.+.+|++.....+... .+ +...+.++++++ +++++
T Consensus 94 ~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~ 171 (361)
T 3scy_A 94 TQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLA 171 (361)
T ss_dssp EEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEE
T ss_pred EeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEE
Confidence 44445566777888 788777776 5789999999754332111 11 122457788854 45555
Q ss_pred Ee-CCCcEEEEEcCCCee------e-------eEeccCCCcEEEEEEecCCCEEEEEe-CCCcEEEEECCCCceEEEEEe
Q 001042 1022 GS-DDWTARMWSISRGTC------D-------AVLACHAGPVQCVEYSSSDRGIITGS-SDGLLRFWENDDGGIKCVKNV 1086 (1178)
Q Consensus 1022 gs-~dg~I~iwd~~~~~~------~-------~~~~~h~~~I~~l~~spdg~~L~sgs-~Dg~I~iwd~~~~~~~~~~~~ 1086 (1178)
++ .++.|.+|++..... + .....+...+..++|+|+|+++++++ .++.|.+|++.++.......+
T Consensus 172 ~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~ 251 (361)
T 3scy_A 172 DDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTV 251 (361)
T ss_dssp EETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEE
T ss_pred EeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEE
Confidence 54 588999999875432 1 11223455678999999999887777 689999999998865555544
Q ss_pred cccC---Cc--EEEEecCCCEEEEEeCC--CcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCE
Q 001042 1087 TIHS---SA--ILSINAGDHWLGIGAAD--NSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKR 1159 (1178)
Q Consensus 1087 ~~h~---~~--i~~is~dg~~Lasgs~D--g~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~ 1159 (1178)
.... .. -.+++|||++|+++..+ +.|.+|++... +|. ++.+..... ...+.+++|+|||++
T Consensus 252 ~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~-------~g~----~~~~~~~~~-g~~~~~~~~spdg~~ 319 (361)
T 3scy_A 252 AADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDET-------NGT----LTKVGYQLT-GIHPRNFIITPNGKY 319 (361)
T ss_dssp ESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTT-------TCC----EEEEEEEEC-SSCCCEEEECTTSCE
T ss_pred ecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCC-------CCc----EEEeeEecC-CCCCceEEECCCCCE
Confidence 3332 22 35569999998776654 89999998621 221 122222222 345778999999999
Q ss_pred EEEEe-CCCcEEEEECC
Q 001042 1160 ICSGG-RNGLLRLWEAT 1175 (1178)
Q Consensus 1160 Las~s-~Dg~V~IWdv~ 1175 (1178)
|++++ .++.|.+|+++
T Consensus 320 l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 320 LLVACRDTNVIQIFERD 336 (361)
T ss_dssp EEEEETTTTEEEEEEEC
T ss_pred EEEEECCCCCEEEEEEE
Confidence 98887 67999996554
No 159
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.71 E-value=2.1e-15 Score=176.13 Aligned_cols=296 Identities=11% Similarity=0.056 Sum_probs=198.2
Q ss_pred ceeeEeecccccceE-------EEecCCCEEEEEeC-CC--cEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEe
Q 001042 873 SELRATLKGHTRTVR-------AINSDRGKVVSGSD-DQ--SVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTAS 941 (1178)
Q Consensus 873 ~~~~~~l~~h~~~V~-------~~s~d~~~l~sgs~-dg--~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs 941 (1178)
......+..|..... +++|||++|+.++. +| .|.+||+.+++......++...+....|+ +++.|+.++
T Consensus 20 g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~ 99 (388)
T 3pe7_A 20 GAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVK 99 (388)
T ss_dssp CCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEE
T ss_pred CcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEe
Confidence 334455666665443 48999999999887 66 48889999998877777776666677898 788899999
Q ss_pred CCCeEEEEeCCCCeEEEEecCCCCCEEEEE--EeCCCCEEEEEe----------------------CCCeEEEEECCCCc
Q 001042 942 HDGTVKMWDVRTDTCVATVGRCSSAVLCME--YDDSTGILAAGG----------------------RDAVANIWDIRAGR 997 (1178)
Q Consensus 942 ~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~--~sp~~~~l~sgs----------------------~dg~I~lwD~~~~~ 997 (1178)
.++.|++||+.+++.......+...+.... ++++++.++... .++.|.+||+.+++
T Consensus 100 ~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~ 179 (388)
T 3pe7_A 100 DGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE 179 (388)
T ss_dssp TTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC
T ss_pred CCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc
Confidence 999999999999987766655555554444 489999887432 34789999999886
Q ss_pred eEEEEecCCccEEEEEEcC-C--EEEEEeCC------CcEEEEEcCCCeeeeEeccCC--CcEEEEEEecCCCEEEEEeC
Q 001042 998 QMHKFLGHTKWIRSIRMDR-D--TVITGSDD------WTARMWSISRGTCDAVLACHA--GPVQCVEYSSSDRGIITGSS 1066 (1178)
Q Consensus 998 ~~~~~~~~~~~v~~l~~~~-~--~l~sgs~d------g~I~iwd~~~~~~~~~~~~h~--~~I~~l~~spdg~~L~sgs~ 1066 (1178)
.. .+..+...+..++|++ + .++..+.+ ..|.++|...+.. ..+..+. ..+...+|+|||+.|+..+.
T Consensus 180 ~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~ 257 (388)
T 3pe7_A 180 ST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSY 257 (388)
T ss_dssp EE-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEE
T ss_pred eE-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEec
Confidence 54 3445666788888877 4 66666653 3788888765543 4444444 35788999999998766543
Q ss_pred -CC----cEEEEECCCCceEEEEEecccCC-----cEEEEecCCCEEEEE---------eCCCcEEEEEcCCCccccccC
Q 001042 1067 -DG----LLRFWENDDGGIKCVKNVTIHSS-----AILSINAGDHWLGIG---------AADNSMSLFHRPQERLGGFSG 1127 (1178)
Q Consensus 1067 -Dg----~I~iwd~~~~~~~~~~~~~~h~~-----~i~~is~dg~~Lasg---------s~Dg~I~iwd~~~~~~~~~~~ 1127 (1178)
++ .|.+||+.+++...+....++.. .-..++|||+.|+.. ..+..|++||+.+++......
T Consensus 258 ~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~ 337 (388)
T 3pe7_A 258 LKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVAR 337 (388)
T ss_dssp ETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEE
T ss_pred CCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEecc
Confidence 22 39999999997666655554211 112578999988754 456789999997542211100
Q ss_pred CCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEe-CCCcEEEEECC
Q 001042 1128 TGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGG-RNGLLRLWEAT 1175 (1178)
Q Consensus 1128 ~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s-~Dg~V~IWdv~ 1175 (1178)
... .|... .......+.+++|+|||+.|+.++ .+|...||.++
T Consensus 338 ~~~---~~~~~--~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 338 HDT---SWKVF--EGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp CCC---CCCCB--TTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ccC---ccccc--ccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 000 00000 000111467889999999888665 57877787654
No 160
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.71 E-value=3.9e-15 Score=171.26 Aligned_cols=247 Identities=8% Similarity=0.065 Sum_probs=168.5
Q ss_pred cccccceEEEEeeeccceeccccccCCCCEEEEEeC---CCcEEEEcCCCCCceeeEeecccccce--EEEecCCCEEEE
Q 001042 824 RGHAGAITALHCVTKREVWDLVGDREDAGFFISGST---DCLVKIWDPSLRGSELRATLKGHTRTV--RAINSDRGKVVS 898 (1178)
Q Consensus 824 ~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~---Dg~I~iWd~~~~~~~~~~~l~~h~~~V--~~~s~d~~~l~s 898 (1178)
..+...+..++|+ |||+ |++++. ++.|++||+..........+..+...+ .+++++|+++++
T Consensus 36 ~~~~~~p~~~a~s------------pdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~ 102 (347)
T 3hfq_A 36 LAATQNPTYLALS------------AKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYS 102 (347)
T ss_dssp EEECSCCCCEEEC------------TTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEE
T ss_pred eeccCCcceEEEc------------cCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEE
Confidence 4455677788887 8898 554443 689999998633333444434444333 467999999988
Q ss_pred Ee-CCCcEEEEECC-CCc--EEEEecC---------CCCceEEEEEe-CCCeEEEEeCCCeEEEEeCC-CCeEEE--Eec
Q 001042 899 GS-DDQSVLVWDKQ-TSQ--LLEELKG---------HDAQVSCVRML-SGERVLTASHDGTVKMWDVR-TDTCVA--TVG 961 (1178)
Q Consensus 899 gs-~dg~I~iwd~~-t~~--~~~~l~~---------h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~-~~~~~~--~~~ 961 (1178)
++ .++.+.+|++. ++. .+..+.. +...+.+++|+ +++.+++...++.|.+||+. +++... .+.
T Consensus 103 ~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~ 182 (347)
T 3hfq_A 103 ANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLT 182 (347)
T ss_dssp EETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEE
T ss_pred EeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEE
Confidence 88 67999999996 333 3333322 12348889999 56655555668899999998 554322 222
Q ss_pred C-CCCCEEEEEEeCCCCEEEE-EeCCCeEEEEECCC--Cce--EEEEecCC------ccEEEEEEcC--CEE-EEEeCCC
Q 001042 962 R-CSSAVLCMEYDDSTGILAA-GGRDAVANIWDIRA--GRQ--MHKFLGHT------KWIRSIRMDR--DTV-ITGSDDW 1026 (1178)
Q Consensus 962 ~-~~~~I~~l~~sp~~~~l~s-gs~dg~I~lwD~~~--~~~--~~~~~~~~------~~v~~l~~~~--~~l-~sgs~dg 1026 (1178)
. .......++|+|+|+++++ +..++.+.+|++.. ++. +..+.... ..+..++|++ +++ ++...++
T Consensus 183 ~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~ 262 (347)
T 3hfq_A 183 MEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYN 262 (347)
T ss_dssp CCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTT
T ss_pred cCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCC
Confidence 2 3346788999999996666 45688999999874 443 22333222 3578888854 456 5566789
Q ss_pred cEEEEEcCC---CeeeeEeccCCCcEEEEEEecCCCEEEEEeCC-CcEEEEEC--CCCceEEE
Q 001042 1027 TARMWSISR---GTCDAVLACHAGPVQCVEYSSSDRGIITGSSD-GLLRFWEN--DDGGIKCV 1083 (1178)
Q Consensus 1027 ~I~iwd~~~---~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~D-g~I~iwd~--~~~~~~~~ 1083 (1178)
.|.+||+.. .+.+..+..+...+.+++|+|+|++|++++.+ +.|.+|++ .+++...+
T Consensus 263 ~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~~ 325 (347)
T 3hfq_A 263 TLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSLL 325 (347)
T ss_dssp EEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE
T ss_pred EEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEec
Confidence 999999973 24555666666778999999999998888754 89999954 56654433
No 161
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.71 E-value=2.4e-15 Score=172.30 Aligned_cols=256 Identities=11% Similarity=0.048 Sum_probs=180.9
Q ss_pred cccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccc---cceEEEecCCCEEE-EEeCCCcEEEEECCCCcEEEEecC
Q 001042 846 GDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHT---RTVRAINSDRGKVV-SGSDDQSVLVWDKQTSQLLEELKG 921 (1178)
Q Consensus 846 ~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~---~~V~~~s~d~~~l~-sgs~dg~I~iwd~~t~~~~~~l~~ 921 (1178)
++++++.++++++.+++|++||.. +.+....+..+. ..-.+++++++.++ ++..++.|.+||+.+++....+..
T Consensus 6 ~~~~~~~~~v~~~~~~~v~~~d~~--~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 6 ALKAGHEYMIVTNYPNNLHVVDVA--SDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCTTCEEEEEEETTTEEEEEETT--TTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccCCCEEEEEeCCCCeEEEEECC--CCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 345889999999999999999976 444555555443 23346899998765 555789999999999998877764
Q ss_pred CC------CceEEEEEe-CCCeEEEEeCC------------CeEEEEeCCCCeE---EEEecCCCCCEEEEEEeCCCCEE
Q 001042 922 HD------AQVSCVRML-SGERVLTASHD------------GTVKMWDVRTDTC---VATVGRCSSAVLCMEYDDSTGIL 979 (1178)
Q Consensus 922 h~------~~V~~l~~~-~~~~l~sgs~d------------g~V~iwd~~~~~~---~~~~~~~~~~I~~l~~sp~~~~l 979 (1178)
+. ..+.+++|+ +++.+++++.+ +.|.+||+.+++. +.... +...+.+++|+|+|+ +
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l 161 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-L 161 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-E
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-E
Confidence 32 237888999 67788888765 8999999988432 33333 334688999999999 6
Q ss_pred EEEeCCCeEEEEECCCCceEEEEecCCc------------------------cEEEEEEcCC-------------EEEEE
Q 001042 980 AAGGRDAVANIWDIRAGRQMHKFLGHTK------------------------WIRSIRMDRD-------------TVITG 1022 (1178)
Q Consensus 980 ~sgs~dg~I~lwD~~~~~~~~~~~~~~~------------------------~v~~l~~~~~-------------~l~sg 1022 (1178)
++++. .|.+||..+++.+..+..+.. ....+++.++ ++...
T Consensus 162 ~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 239 (349)
T 1jmx_B 162 YVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 239 (349)
T ss_dssp EEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred EEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEe
Confidence 66543 499999999988877653320 2223443211 11122
Q ss_pred eCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEec-CCCEEEEEeCCCcEEEEECCCCceEEEEEec-ccCCcEEEEecCC
Q 001042 1023 SDDWTARMWSISRGTCDAVLACHAGPVQCVEYSS-SDRGIITGSSDGLLRFWENDDGGIKCVKNVT-IHSSAILSINAGD 1100 (1178)
Q Consensus 1023 s~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp-dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~-~h~~~i~~is~dg 1100 (1178)
..++.+++|+. ..+...+.+++++| +|++++++ ++.|.+||+.++ +....+. ++...-.+++++|
T Consensus 240 ~~~~~~~~~~~---------~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~--~~~~~~~~~~~~~~~~~s~dg 306 (349)
T 1jmx_B 240 LKTGKTHTQEF---------ADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQR--KLIKAANLDHTYYCVAFDKKG 306 (349)
T ss_dssp TTTCCEEEEEE---------EECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTT--EEEEEEECSSCCCEEEECSSS
T ss_pred ccCCcEEeccc---------ccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccC--eEEEEEcCCCCccceEECCCC
Confidence 23344444443 23556788999999 99999888 889999999998 4444443 3344456779999
Q ss_pred CEEEEEeCCCcEEEEEcCCC
Q 001042 1101 HWLGIGAADNSMSLFHRPQE 1120 (1178)
Q Consensus 1101 ~~Lasgs~Dg~I~iwd~~~~ 1120 (1178)
++|++++.++.|.+||..++
T Consensus 307 ~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 307 DKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp SCEEEESBSSEEEEEETTTT
T ss_pred CEEEEecCCCeEEEEecccc
Confidence 99998888999999999754
No 162
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.71 E-value=1.4e-15 Score=194.08 Aligned_cols=318 Identities=8% Similarity=0.045 Sum_probs=209.6
Q ss_pred ceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccc-----e--EEEecCCCEEEEEeC
Q 001042 829 AITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRT-----V--RAINSDRGKVVSGSD 901 (1178)
Q Consensus 829 ~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~-----V--~~~s~d~~~l~sgs~ 901 (1178)
...+++|+ +||++++++ ||+|++||+.. ......+.+|... . .++||||++++.++.
T Consensus 18 ~~~~~~w~------------~dg~~~~~~--~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~ 81 (740)
T 4a5s_A 18 KLYSLRWI------------SDHEYLYKQ--ENNILVFNAEY--GNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYN 81 (740)
T ss_dssp CCCCEEEC------------SSSEEEEEE--TTEEEEEETTT--CCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEE
T ss_pred cccccEEC------------CCCcEEEEc--CCcEEEEECCC--CceEEEEechhhhhhcccccceEECCCCCEEEEEEC
Confidence 35577787 899999886 99999999873 3334556666532 2 467999999999887
Q ss_pred C---------CcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEe-cCCCCCE---
Q 001042 902 D---------QSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATV-GRCSSAV--- 967 (1178)
Q Consensus 902 d---------g~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~-~~~~~~I--- 967 (1178)
+ +.+.+||+.+++.. .+..|...+...+|+ +|+.|+.+ .|+.|++||+.+++..+.. .++...+
T Consensus 82 ~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g 159 (740)
T 4a5s_A 82 YVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNG 159 (740)
T ss_dssp EEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEES
T ss_pred CeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecC
Confidence 6 56779999998764 467778889999999 67778776 5789999999988755432 2222222
Q ss_pred --------------EEEEEeCCCCEEEEEeCCC------------------------------------eEEEEECCC--
Q 001042 968 --------------LCMEYDDSTGILAAGGRDA------------------------------------VANIWDIRA-- 995 (1178)
Q Consensus 968 --------------~~l~~sp~~~~l~sgs~dg------------------------------------~I~lwD~~~-- 995 (1178)
..+.|||||+.|+.++.|. .|++||+.+
T Consensus 160 ~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~ 239 (740)
T 4a5s_A 160 ITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLS 239 (740)
T ss_dssp BCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCC
T ss_pred cccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCC
Confidence 3489999999999875221 588899988
Q ss_pred -Cc--eEEEEe------cCCccEEEEEEcCC--EEEEEeC----CCcEEEEEcCCCe----ee--eEe--ccCCCcEE--
Q 001042 996 -GR--QMHKFL------GHTKWIRSIRMDRD--TVITGSD----DWTARMWSISRGT----CD--AVL--ACHAGPVQ-- 1050 (1178)
Q Consensus 996 -~~--~~~~~~------~~~~~v~~l~~~~~--~l~sgs~----dg~I~iwd~~~~~----~~--~~~--~~h~~~I~-- 1050 (1178)
++ ....+. ++...+..++|+++ .++.... +..|++||+.+++ +. ..+ ..|.+.|.
T Consensus 240 ~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~ 319 (740)
T 4a5s_A 240 SVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRF 319 (740)
T ss_dssp SSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSS
T ss_pred CCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccC
Confidence 73 233333 37778899999544 4544432 3369999999887 32 222 44666554
Q ss_pred ---EEEEecCCCEEE-EEeC-C--CcEEEEECCCCceEEEEEecccCCcEEEE-ecCCCEEEEEeCC-----CcEEEEEc
Q 001042 1051 ---CVEYSSSDRGII-TGSS-D--GLLRFWENDDGGIKCVKNVTIHSSAILSI-NAGDHWLGIGAAD-----NSMSLFHR 1117 (1178)
Q Consensus 1051 ---~l~~spdg~~L~-sgs~-D--g~I~iwd~~~~~~~~~~~~~~h~~~i~~i-s~dg~~Lasgs~D-----g~I~iwd~ 1117 (1178)
..+|+|||+.++ ..+. + ..|.+||..++... .+......+..+ .+|++.|+..+.. +...||.+
T Consensus 320 ~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~---~lT~g~~~v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v 396 (740)
T 4a5s_A 320 RPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT---FITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKI 396 (740)
T ss_dssp SCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE---ESCCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEE
T ss_pred cCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE---ecccCCEEEEEEEEEeCCEEEEEEecCCCCCceeEEEEE
Confidence 789999999877 6653 3 35888898876432 233334444443 4667766654443 44566654
Q ss_pred CCCccccccCCCCCccceeEeec-cCCCcccEEEEEEcCCCCEEEEEeCC---CcEEEEECCCC
Q 001042 1118 PQERLGGFSGTGSKMSGWQLYRT-PQKTVAVVRCIASDLERKRICSGGRN---GLLRLWEATIN 1177 (1178)
Q Consensus 1118 ~~~~~~~~~~~g~~~~~~~~~~~-~~~h~~~V~~lafspdg~~Las~s~D---g~V~IWdv~tg 1177 (1178)
... |... -+++.. ..+....+....|||||++++....+ ..+.+++..++
T Consensus 397 ~~~--------g~~~--~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~ 450 (740)
T 4a5s_A 397 QLI--------DYTK--VTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVND 450 (740)
T ss_dssp ETT--------EEEE--EEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTT
T ss_pred ECC--------CCCc--ceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCC
Confidence 321 1000 001111 11234567889999999987655433 36777777654
No 163
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.68 E-value=9.5e-16 Score=182.36 Aligned_cols=235 Identities=13% Similarity=0.098 Sum_probs=164.5
Q ss_pred cceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCC------C---ceeeE----eecccccceE--EEecC
Q 001042 828 GAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLR------G---SELRA----TLKGHTRTVR--AINSD 892 (1178)
Q Consensus 828 ~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~------~---~~~~~----~l~~h~~~V~--~~s~d 892 (1178)
..++.++++ +++.++++|+.|| +++|+.... . ..... ....+...|. +|+++
T Consensus 37 ~~~n~lavs------------~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spd 103 (434)
T 2oit_A 37 ERSSLLAVS------------NKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCD 103 (434)
T ss_dssp SCCBCEEEE------------TTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTT
T ss_pred CCccEEEEe------------cCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCC
Confidence 357778887 8899999999998 899864200 0 00000 0112444566 46899
Q ss_pred CCEEE----EEeCCCcEEEEECCCC--------c---EEEEecCCCCceEEEEEeC--CCeEEEEeCCCeEEEEeCCCCe
Q 001042 893 RGKVV----SGSDDQSVLVWDKQTS--------Q---LLEELKGHDAQVSCVRMLS--GERVLTASHDGTVKMWDVRTDT 955 (1178)
Q Consensus 893 ~~~l~----sgs~dg~I~iwd~~t~--------~---~~~~l~~h~~~V~~l~~~~--~~~l~sgs~dg~V~iwd~~~~~ 955 (1178)
+++|+ +|+.|+.|++||+.++ + ....+.+|...|.+++|++ +..+++++.||+|++||++++.
T Consensus 104 g~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~ 183 (434)
T 2oit_A 104 NLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETV 183 (434)
T ss_dssp SCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSE
T ss_pred CCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCc
Confidence 99999 7888999999998764 2 2455678999999999993 6789999999999999999998
Q ss_pred EEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecC-------CccEEEEEEcCC--EEE-EEeCC
Q 001042 956 CVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGH-------TKWIRSIRMDRD--TVI-TGSDD 1025 (1178)
Q Consensus 956 ~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~-------~~~v~~l~~~~~--~l~-sgs~d 1025 (1178)
.......|...|.+++|+|+|++|++|+.||.|++||.+ ++....+..+ ...+.+++|+++ +++ .++.|
T Consensus 184 ~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~d 262 (434)
T 2oit_A 184 KVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAAD 262 (434)
T ss_dssp EEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETT
T ss_pred ceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCC
Confidence 776666788899999999999999999999999999998 6665555443 237899999665 332 24444
Q ss_pred Cc------EEEEEcCCCee--eeEecc----------CCCcEEEEEEecCCCEEEEEe-CCCcEEEEECC
Q 001042 1026 WT------ARMWSISRGTC--DAVLAC----------HAGPVQCVEYSSSDRGIITGS-SDGLLRFWEND 1076 (1178)
Q Consensus 1026 g~------I~iwd~~~~~~--~~~~~~----------h~~~I~~l~~spdg~~L~sgs-~Dg~I~iwd~~ 1076 (1178)
|. +++|++++.+. ...+.. ...+-..+.+-++.+++++++ ..+.|.+....
T Consensus 263 g~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~ 332 (434)
T 2oit_A 263 GTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQ 332 (434)
T ss_dssp CCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred CccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEec
Confidence 33 89999986521 112111 122222334446666655554 34446665543
No 164
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.66 E-value=3.8e-15 Score=174.12 Aligned_cols=282 Identities=9% Similarity=-0.029 Sum_probs=186.8
Q ss_pred ccCCCCEEEEEeCC---CcEEEEcCCCCCceeeEeecccccce--EEEecCCCEEEEEeCCCcEEEEECCCCcEEEEecC
Q 001042 847 DREDAGFFISGSTD---CLVKIWDPSLRGSELRATLKGHTRTV--RAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKG 921 (1178)
Q Consensus 847 ~s~d~~~Lasgs~D---g~I~iWd~~~~~~~~~~~l~~h~~~V--~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~ 921 (1178)
+||||++|+.++.+ ..|.+||+. +.+......++.... ..|+|||+.|+.++.++.|.+||+.+++.......
T Consensus 43 ~SpdG~~l~~~~~~~g~~~l~~~d~~--~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~ 120 (396)
T 3c5m_A 43 FTQDGKKLLFAGDFDGNRNYYLLNLE--TQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTV 120 (396)
T ss_dssp BCTTSCEEEEEECTTSSCEEEEEETT--TTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred CCCCCCEEEEEEecCCCceEEEEECC--CCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEec
Confidence 34999998877653 368888876 344433333333222 46899999999999999999999999887665554
Q ss_pred CCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEE-----eCCCeEEEEECCC
Q 001042 922 HDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAG-----GRDAVANIWDIRA 995 (1178)
Q Consensus 922 h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sg-----s~dg~I~lwD~~~ 995 (1178)
+.. |. ++..++..+.++...+|+ ..+.++|+++.++.+ ..++.|.+||+.+
T Consensus 121 ~~~------~~~~g~~l~~~~~~~~~~~~~-----------------~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~ 177 (396)
T 3c5m_A 121 DEE------WKGYGTWVANSDCTKLVGIEI-----------------LKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIET 177 (396)
T ss_dssp CTT------EEEEEEEEECTTSSEEEEEEE-----------------EGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTT
T ss_pred ccc------cCCCCCEEEeccCCccccccc-----------------cccccCCCCcceeeeeeccCCCcceEEEEECCC
Confidence 443 33 445555555555444443 124577888877654 3567899999998
Q ss_pred CceEEEEecCCccEEEEEEcC---CEEEEEeCC------CcEEEEEcCCCeeeeEeccC--CCcEEEEEEecCCCEEEEE
Q 001042 996 GRQMHKFLGHTKWIRSIRMDR---DTVITGSDD------WTARMWSISRGTCDAVLACH--AGPVQCVEYSSSDRGIITG 1064 (1178)
Q Consensus 996 ~~~~~~~~~~~~~v~~l~~~~---~~l~sgs~d------g~I~iwd~~~~~~~~~~~~h--~~~I~~l~~spdg~~L~sg 1064 (1178)
++..... .+...+..+.|++ +.++..+.+ ..|.+||+..++.. .+..+ ...+..++|+|+|++|+.+
T Consensus 178 g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~ 255 (396)
T 3c5m_A 178 GELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYV 255 (396)
T ss_dssp CCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEE
T ss_pred CcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEE
Confidence 8765444 5666788888866 356655543 36888998765433 33323 2358889999999988777
Q ss_pred eCC-----CcEEEEECCCCceEEEEEecccCCcEEEEec-CCCEEEEEe----------------CCCcEEEEEcCCCcc
Q 001042 1065 SSD-----GLLRFWENDDGGIKCVKNVTIHSSAILSINA-GDHWLGIGA----------------ADNSMSLFHRPQERL 1122 (1178)
Q Consensus 1065 s~D-----g~I~iwd~~~~~~~~~~~~~~h~~~i~~is~-dg~~Lasgs----------------~Dg~I~iwd~~~~~~ 1122 (1178)
+.+ +.|++||+.+++...+....++. ..+++ +|+++++++ .++.|.+||+.+++.
T Consensus 256 ~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~---~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (396)
T 3c5m_A 256 SYFKGQTDRVIYKANPETLENEEVMVMPPCS---HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA 332 (396)
T ss_dssp EEETTTCCEEEEEECTTTCCEEEEEECCSEE---EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC
T ss_pred ecCCCCccceEEEEECCCCCeEEeeeCCCCC---CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce
Confidence 544 44999999988655554444332 56788 999888765 347899999875432
Q ss_pred ccccCCCCCccceeEeeccCCCcc-----------cEEEEEEcCCCCEEEEEeC-CCcEEEEEC
Q 001042 1123 GGFSGTGSKMSGWQLYRTPQKTVA-----------VVRCIASDLERKRICSGGR-NGLLRLWEA 1174 (1178)
Q Consensus 1123 ~~~~~~g~~~~~~~~~~~~~~h~~-----------~V~~lafspdg~~Las~s~-Dg~V~IWdv 1174 (1178)
.. + ..+.. .+..++|+|||+.|+.++. +|...+|.+
T Consensus 333 ~~-------------l---~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 333 QK-------------L---CKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp CE-------------E---EECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred EE-------------c---cCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 11 1 11111 2456789999999887764 566566554
No 165
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.66 E-value=1.2e-14 Score=168.47 Aligned_cols=264 Identities=10% Similarity=0.090 Sum_probs=190.1
Q ss_pred cCCCEEEEEe------CCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEe----------CCCeEEEEeCCC
Q 001042 891 SDRGKVVSGS------DDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTAS----------HDGTVKMWDVRT 953 (1178)
Q Consensus 891 ~d~~~l~sgs------~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs----------~dg~V~iwd~~~ 953 (1178)
++++++++.. .|+.|.+||..+++.+..+..+..+ .++++ +++++++++ .+++|.+||..+
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t 90 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK 90 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC
Confidence 3555655543 3689999999999999888876655 88999 677888776 367899999999
Q ss_pred CeEEEEecCC------CCCEEEEEEeCCCCEEEEEeC--CCeEEEEECCCCceEEE-EecCCccEEEEEE--c-CCEEEE
Q 001042 954 DTCVATVGRC------SSAVLCMEYDDSTGILAAGGR--DAVANIWDIRAGRQMHK-FLGHTKWIRSIRM--D-RDTVIT 1021 (1178)
Q Consensus 954 ~~~~~~~~~~------~~~I~~l~~sp~~~~l~sgs~--dg~I~lwD~~~~~~~~~-~~~~~~~v~~l~~--~-~~~l~s 1021 (1178)
++.+..+... ......++++|+|++++++.. ++.|.+||+.+++.+.. +... +. ..+.+ + +..+++
T Consensus 91 ~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-~~-~~v~~~p~~~~~~~~ 168 (361)
T 2oiz_A 91 LTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA-GC-WSVIPQPNRPRSFMT 168 (361)
T ss_dssp CCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT-TE-EEEEECTTSSSEEEE
T ss_pred CcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC-Cc-ceeEEcCCCCeeEEE
Confidence 9888877532 234667999999999998874 58999999999988877 5332 21 22333 2 247888
Q ss_pred EeCCCcEEEEEcCC-CeeeeE------eccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecc------
Q 001042 1022 GSDDWTARMWSISR-GTCDAV------LACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTI------ 1088 (1178)
Q Consensus 1022 gs~dg~I~iwd~~~-~~~~~~------~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~------ 1088 (1178)
.+.||.+.+|+... ++.... +..+..++ .+.+++++..++..+.++.|.++|+..+.......+..
T Consensus 169 ~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~ 247 (361)
T 2oiz_A 169 ICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDK 247 (361)
T ss_dssp EETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHH
T ss_pred ECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccc
Confidence 99999999999865 544311 22222222 33446778888888889999999998665443333211
Q ss_pred ------cCCcEEEEecCCCEEEEEeC-----------CCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEE
Q 001042 1089 ------HSSAILSINAGDHWLGIGAA-----------DNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCI 1151 (1178)
Q Consensus 1089 ------h~~~i~~is~dg~~Lasgs~-----------Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~l 1151 (1178)
......+++++++.+.++.. ++.|.+||+.+. +.+.++..+. +.++
T Consensus 248 ~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~---------------~~v~~i~~~~--p~~i 310 (361)
T 2oiz_A 248 AKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK---------------QRVARIPGRD--ALSM 310 (361)
T ss_dssp HTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT---------------EEEEEEECTT--CCEE
T ss_pred ccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC---------------cEEEEEecCC--eeEE
Confidence 11223678999888777643 347999998744 4555555554 8899
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCC
Q 001042 1152 ASDLERKRICSGGRNGLLRLWEATIN 1177 (1178)
Q Consensus 1152 afspdg~~Las~s~Dg~V~IWdv~tg 1177 (1178)
+|+|||++|++++. ++|.+||..++
T Consensus 311 a~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 311 TIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp EEETTTTEEEEECS-SCEEEEECSSS
T ss_pred EECCCCCEEEEeCC-CeEEEEECCCC
Confidence 99999999998886 99999999987
No 166
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.65 E-value=3.2e-14 Score=166.05 Aligned_cols=286 Identities=9% Similarity=-0.029 Sum_probs=190.7
Q ss_pred ceEEecccccceEEEEeeeccceeccccccCCCCEEEEEeC-CCc--EEEEcCCCCCceeeEeecccccce--EEEecCC
Q 001042 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGST-DCL--VKIWDPSLRGSELRATLKGHTRTV--RAINSDR 893 (1178)
Q Consensus 819 ~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~-Dg~--I~iWd~~~~~~~~~~~l~~h~~~V--~~~s~d~ 893 (1178)
.+..+..|.+.+...-+ ....|||||++|+.++. +|. |.+||+. +.+......++...+ .+++|||
T Consensus 22 ~~~~lt~~~~~~~~~~~-------~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~--~g~~~~lt~~~~~~~~~~~~spdg 92 (388)
T 3pe7_A 22 QVTRLTPPDVTCHRNYF-------YQKCFTRDGSKLLFGGAFDGPWNYYLLDLN--TQVATQLTEGRGDNTFGGFLSPDD 92 (388)
T ss_dssp EEEECSCTTSCEECCCT-------TSCCBCTTSCEEEEEECTTSSCEEEEEETT--TCEEEECCCSSCBCSSSCEECTTS
T ss_pred ceEEecCCcccccchhh-------cCccCCCCCCEEEEEEcCCCCceEEEEeCC--CCceEEeeeCCCCCccceEEcCCC
Confidence 56677777766555111 11234599999999987 674 7777865 555555566665554 3789999
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEE--e-CCCeEEEE----------------------eCCCeEEE
Q 001042 894 GKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRM--L-SGERVLTA----------------------SHDGTVKM 948 (1178)
Q Consensus 894 ~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~--~-~~~~l~sg----------------------s~dg~V~i 948 (1178)
+.|+.++.++.|++||+.+++.......+...+....| + ++..++.. ..++.|.+
T Consensus 93 ~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 172 (388)
T 3pe7_A 93 DALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMR 172 (388)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEE
Confidence 99999999999999999999887777767666655544 4 55555532 24578999
Q ss_pred EeCCCCeEEEEecCCCCCEEEEEEeC-CCCEEEEEeCC------CeEEEEECCCCceEEEEecCC--ccEEEEEEcC--C
Q 001042 949 WDVRTDTCVATVGRCSSAVLCMEYDD-STGILAAGGRD------AVANIWDIRAGRQMHKFLGHT--KWIRSIRMDR--D 1017 (1178)
Q Consensus 949 wd~~~~~~~~~~~~~~~~I~~l~~sp-~~~~l~sgs~d------g~I~lwD~~~~~~~~~~~~~~--~~v~~l~~~~--~ 1017 (1178)
||+.+++..... .+...+..++|+| +|+.++.+..+ ..|.++|..+++. ..+..+. ..+...+|++ +
T Consensus 173 ~d~~~g~~~~l~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~ 250 (388)
T 3pe7_A 173 VDLKTGESTVIL-QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGS 250 (388)
T ss_dssp EETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSS
T ss_pred EECCCCceEEee-cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCC
Confidence 999998755443 4566789999999 99998877753 3788888776544 3333333 3577778854 4
Q ss_pred EEEEEe-CCC----cEEEEEcCCCeeee--EeccCCCc---EEEEEEecCCCEEEEE---------eCCCcEEEEECCCC
Q 001042 1018 TVITGS-DDW----TARMWSISRGTCDA--VLACHAGP---VQCVEYSSSDRGIITG---------SSDGLLRFWENDDG 1078 (1178)
Q Consensus 1018 ~l~sgs-~dg----~I~iwd~~~~~~~~--~~~~h~~~---I~~l~~spdg~~L~sg---------s~Dg~I~iwd~~~~ 1078 (1178)
.|+..+ .++ .|++||+.+++... .+.++... ....+|+|||+.|+.. ..+..|.+||+.++
T Consensus 251 ~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 251 ALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp CEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT
T ss_pred EEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence 554433 222 39999999887432 23221100 1223799999988754 45678999999988
Q ss_pred ceEEEEEecccCC-------------cEEEEecCCCEEEEEe-CCCcEEEEEcC
Q 001042 1079 GIKCVKNVTIHSS-------------AILSINAGDHWLGIGA-ADNSMSLFHRP 1118 (1178)
Q Consensus 1079 ~~~~~~~~~~h~~-------------~i~~is~dg~~Lasgs-~Dg~I~iwd~~ 1118 (1178)
+...+ ..+.. .-.+++|||+.|+.++ .+|...||.+.
T Consensus 331 ~~~~l---~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 331 TQHRV---ARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp EEEEE---EECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ceEEe---ccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 54333 23322 2346799999888766 46777777654
No 167
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.65 E-value=1.6e-14 Score=167.81 Aligned_cols=270 Identities=9% Similarity=0.058 Sum_probs=178.2
Q ss_pred EEEEEeCC--CcEEEEEC--CCCcEEE--Eec-CCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCC-CCeEEEEecC-CC
Q 001042 895 KVVSGSDD--QSVLVWDK--QTSQLLE--ELK-GHDAQVSCVRML-SGERVLTASHDGTVKMWDVR-TDTCVATVGR-CS 964 (1178)
Q Consensus 895 ~l~sgs~d--g~I~iwd~--~t~~~~~--~l~-~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~-~~~~~~~~~~-~~ 964 (1178)
.+++|+.. +.|.+|++ .+++... ... .....+..++++ +++++++++.+ .|.+||+. +++....... ..
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 45566653 46877764 5665432 221 234567889999 67778888887 99999997 7776543321 11
Q ss_pred CCEEEEEEeCCCCE--EEEEe-------------CCCeEEEEECC-CCceEEEEe----cCCccEEEEEEcC--CEEEEE
Q 001042 965 SAVLCMEYDDSTGI--LAAGG-------------RDAVANIWDIR-AGRQMHKFL----GHTKWIRSIRMDR--DTVITG 1022 (1178)
Q Consensus 965 ~~I~~l~~sp~~~~--l~sgs-------------~dg~I~lwD~~-~~~~~~~~~----~~~~~v~~l~~~~--~~l~sg 1022 (1178)
+...+++++|+|+. +++++ .+|.+.+|++. +++....+. .+...+.+++|++ ++++++
T Consensus 83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~ 162 (365)
T 1jof_A 83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA 162 (365)
T ss_dssp SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE
Confidence 23556899999994 44543 68999999997 466544433 2456788999964 467766
Q ss_pred e-CCCcEEEEEcC-CCeee--eEec--cCCCcEEEEEEecCCCEEEEEeC-CCcEEEEECC--CCceEE----EEEec--
Q 001042 1023 S-DDWTARMWSIS-RGTCD--AVLA--CHAGPVQCVEYSSSDRGIITGSS-DGLLRFWEND--DGGIKC----VKNVT-- 1087 (1178)
Q Consensus 1023 s-~dg~I~iwd~~-~~~~~--~~~~--~h~~~I~~l~~spdg~~L~sgs~-Dg~I~iwd~~--~~~~~~----~~~~~-- 1087 (1178)
+ .++.|++||+. +++.. ..+. .|...+..++|+|+|+++++++. ++.|.+|+++ +++... +..+.
T Consensus 163 ~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 242 (365)
T 1jof_A 163 DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPG 242 (365)
T ss_dssp ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTT
T ss_pred cCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCC
Confidence 5 46799999998 67643 2333 24567899999999999888774 7899999876 454322 22222
Q ss_pred --ccC--------CcEEE-EecCCCEEEEEeCCC------cEEEEEcCCCccccccCCCCCccceeEee-ccCCCcccEE
Q 001042 1088 --IHS--------SAILS-INAGDHWLGIGAADN------SMSLFHRPQERLGGFSGTGSKMSGWQLYR-TPQKTVAVVR 1149 (1178)
Q Consensus 1088 --~h~--------~~i~~-is~dg~~Lasgs~Dg------~I~iwd~~~~~~~~~~~~g~~~~~~~~~~-~~~~h~~~V~ 1149 (1178)
+|. ..-.+ ++|||++|++++.+. +|.+|++.. +|. + .... ....+...+.
T Consensus 243 ~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~--------~g~-~---~~~~~~~~~~~~~~~ 310 (365)
T 1jof_A 243 IPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRD--------CGS-I---EKQLFLSPTPTSGGH 310 (365)
T ss_dssp CCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECT--------TSC-E---EEEEEEEECSSCCTT
T ss_pred cCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECC--------CCC-E---EEeeeeeecCCCCcc
Confidence 122 12356 789999988766432 899999852 121 1 1111 1112333455
Q ss_pred EEEEcC---CCCEEEEEeCC-CcEEEEECCCC
Q 001042 1150 CIASDL---ERKRICSGGRN-GLLRLWEATIN 1177 (1178)
Q Consensus 1150 ~lafsp---dg~~Las~s~D-g~V~IWdv~tg 1177 (1178)
.++|+| ||++|++++.+ +.|.+|+++.+
T Consensus 311 ~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 311 SNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp CCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred cceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 789999 89999999865 89999998653
No 168
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.61 E-value=3.4e-13 Score=156.30 Aligned_cols=290 Identities=11% Similarity=0.058 Sum_probs=199.0
Q ss_pred CCCCEEEEEe------CCCcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEEeC----------CCcEEEEECCC
Q 001042 849 EDAGFFISGS------TDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSD----------DQSVLVWDKQT 912 (1178)
Q Consensus 849 ~d~~~Lasgs------~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sgs~----------dg~I~iwd~~t 912 (1178)
++++++.+.. .|+.|.+||.. ..+....+..+..+-.+++||++++++++. ++.|.+||..+
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~--t~~~~~~i~~g~~p~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t 90 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYT--NGKFLGMVPTAFNGHVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK 90 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETT--TCCEEEEEECCEEEEEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT
T ss_pred CCCCEEEEECCCCCccccCeEEEEECC--CCeEEEEecCCCCCceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC
Confidence 3555555543 37899999975 344556666655554578999999998863 67899999999
Q ss_pred CcEEEEecCC------CCceEEEEEe-CCCeEEEEeC--CCeEEEEeCCCCeEEEE-ecCCCCCEEEEEEeCCC-CEEEE
Q 001042 913 SQLLEELKGH------DAQVSCVRML-SGERVLTASH--DGTVKMWDVRTDTCVAT-VGRCSSAVLCMEYDDST-GILAA 981 (1178)
Q Consensus 913 ~~~~~~l~~h------~~~V~~l~~~-~~~~l~sgs~--dg~V~iwd~~~~~~~~~-~~~~~~~I~~l~~sp~~-~~l~s 981 (1178)
++.+..+... ......++++ ++++++++.. +++|.+||+.+++.+.. +... ....+.+.|++ ..+++
T Consensus 91 ~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~~~~~~ 168 (361)
T 2oiz_A 91 LTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQPNRPRSFMT 168 (361)
T ss_dssp CCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECTTSSSEEEE
T ss_pred CcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcCCCCeeEEE
Confidence 9998887643 3456778898 7888887764 68999999999998887 5432 22335667765 67788
Q ss_pred EeCCCeEEEEECCC-CceEEEE------ecCCccEE-EEEEcCCEEEEEeCCCcEEEEEcCCCee--eeEecc------C
Q 001042 982 GGRDAVANIWDIRA-GRQMHKF------LGHTKWIR-SIRMDRDTVITGSDDWTARMWSISRGTC--DAVLAC------H 1045 (1178)
Q Consensus 982 gs~dg~I~lwD~~~-~~~~~~~------~~~~~~v~-~l~~~~~~l~sgs~dg~I~iwd~~~~~~--~~~~~~------h 1045 (1178)
.+.||.+.+|+... ++..... .....++. ....++..++..+.++.+.++|+..+.. ...+.. +
T Consensus 169 ~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~ 248 (361)
T 2oiz_A 169 ICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKA 248 (361)
T ss_dssp EETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHH
T ss_pred ECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccc
Confidence 88999999999865 5544221 11111111 1123456677777889999999875532 122110 1
Q ss_pred C----CcEEEEEEecCCCEEEEEeC-----------CCcEEEEECCCCceEEEEEecccCCcEEEEecCCCEEEEEeCCC
Q 001042 1046 A----GPVQCVEYSSSDRGIITGSS-----------DGLLRFWENDDGGIKCVKNVTIHSSAILSINAGDHWLGIGAADN 1110 (1178)
Q Consensus 1046 ~----~~I~~l~~spdg~~L~sgs~-----------Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~Lasgs~Dg 1110 (1178)
. .....++++|+++.++++.. ++.|.+||+.++ +.+..+..+...-.+++|||++|++++. +
T Consensus 249 ~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~--~~v~~i~~~~p~~ia~spdg~~l~v~n~-~ 325 (361)
T 2oiz_A 249 KNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK--QRVARIPGRDALSMTIDQQRNLMLTLDG-G 325 (361)
T ss_dssp TTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT--EEEEEEECTTCCEEEEETTTTEEEEECS-S
T ss_pred cccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC--cEEEEEecCCeeEEEECCCCCEEEEeCC-C
Confidence 1 11123789999888776643 347999999998 6677776665445667999999998887 9
Q ss_pred cEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCC
Q 001042 1111 SMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERK 1158 (1178)
Q Consensus 1111 ~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~ 1158 (1178)
+|.+||..++++ +.+.....+......++++|||+
T Consensus 326 ~v~v~D~~t~~l-------------~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 326 NVNVYDISQPEP-------------KLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp CEEEEECSSSSC-------------EEEEEETTSCSSEEEEEECCCSC
T ss_pred eEEEEECCCCcc-------------eeeEEeccCCCCcEEEEecCCCC
Confidence 999999985411 33444344556678899999986
No 169
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.61 E-value=4.2e-14 Score=180.33 Aligned_cols=312 Identities=10% Similarity=0.077 Sum_probs=200.0
Q ss_pred eEEEEecCCCCcccccccceeecccccccCCCCCCCCCCCcCCcccccceEEecccccce-----EEEEeeeccceeccc
Q 001042 771 WVQSMFSREASSRSHSFSRVRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAI-----TALHCVTKREVWDLV 845 (1178)
Q Consensus 771 i~~~aFSpdg~~las~~~dI~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V-----~~l~fs~~~~~~~~~ 845 (1178)
...++|+|||++++++...|++||+.+++ +...+.+|...+ ..++||
T Consensus 19 ~~~~~w~~dg~~~~~~~~~i~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~S--------- 70 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQENNILVFNAEYGN-------------------SSVFLENSTFDEFGHSINDYSIS--------- 70 (740)
T ss_dssp CCCEEECSSSEEEEEETTEEEEEETTTCC-------------------EEEEECTTTTTTCCSCCCEEEEC---------
T ss_pred ccccEECCCCcEEEEcCCcEEEEECCCCc-------------------eEEEEechhhhhhcccccceEEC---------
Confidence 44679999999999972229999999887 566677776543 235555
Q ss_pred cccCCCCEEEEEeCC---------CcEEEEcCCCCCceeeEeecccccceE--EEecCCCEEEEEeCCCcEEEEECCCCc
Q 001042 846 GDREDAGFFISGSTD---------CLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKVVSGSDDQSVLVWDKQTSQ 914 (1178)
Q Consensus 846 ~~s~d~~~Lasgs~D---------g~I~iWd~~~~~~~~~~~l~~h~~~V~--~~s~d~~~l~sgs~dg~I~iwd~~t~~ 914 (1178)
|||++|+.++.+ +.+.+||+. +.+. ..+..|...+. +|||||+.||.+. ++.|++||+.+++
T Consensus 71 ---pdg~~l~~~~~~~~~~r~~~~~~~~~~d~~--~~~~-~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~ 143 (740)
T 4a5s_A 71 ---PDGQFILLEYNYVKQWRHSYTASYDIYDLN--KRQL-ITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLP 143 (740)
T ss_dssp ---TTSSEEEEEEEEEECSSSCEEEEEEEEETT--TTEE-CCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSC
T ss_pred ---CCCCEEEEEECCeeeEEEccceEEEEEECC--CCcE-EEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCc
Confidence 999999999886 566799987 3333 34566666665 5799999999885 6899999999887
Q ss_pred EEEE-ecCCCCce-----------------EEEEEe-CCCeEEEEeCC--------------------------------
Q 001042 915 LLEE-LKGHDAQV-----------------SCVRML-SGERVLTASHD-------------------------------- 943 (1178)
Q Consensus 915 ~~~~-l~~h~~~V-----------------~~l~~~-~~~~l~sgs~d-------------------------------- 943 (1178)
..+. ..++...+ ..+.|+ +|+.|+.++.|
T Consensus 144 ~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~ 223 (740)
T 4a5s_A 144 SYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGA 223 (740)
T ss_dssp CEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTS
T ss_pred eEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcC
Confidence 5442 22332222 348899 77788876532
Q ss_pred ----CeEEEEeCCC---C---eEEEEec------CCCCCEEEEEEeCCCCEEEEEeC----CCeEEEEECCCCc----eE
Q 001042 944 ----GTVKMWDVRT---D---TCVATVG------RCSSAVLCMEYDDSTGILAAGGR----DAVANIWDIRAGR----QM 999 (1178)
Q Consensus 944 ----g~V~iwd~~~---~---~~~~~~~------~~~~~I~~l~~sp~~~~l~sgs~----dg~I~lwD~~~~~----~~ 999 (1178)
.+|++||+.+ + +.. .+. ++...+..++|+|||+.++.... +..|.+||+.+++ +.
T Consensus 224 ~~~~~~l~v~d~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~ 302 (740)
T 4a5s_A 224 VNPTVKFFVVNTDSLSSVTNATSI-QITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCL 302 (740)
T ss_dssp CCCEEEEEEEETTSCCSSSCCCEE-EECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEEC
T ss_pred cCCeeEEEEEECCCCCCCCcceEE-EecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCcccccee
Confidence 1588899988 7 333 333 26677999999999997666543 3379999999887 21
Q ss_pred --EEE--ecCCccEE-----EEEEc--CCEEE-EEe-CCC--cEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEE
Q 001042 1000 --HKF--LGHTKWIR-----SIRMD--RDTVI-TGS-DDW--TARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITG 1064 (1178)
Q Consensus 1000 --~~~--~~~~~~v~-----~l~~~--~~~l~-sgs-~dg--~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sg 1064 (1178)
..+ .++...+. ..+|+ ++.++ ..+ .+| .|++||..+++.. .+......+..+.. +|++.|+..
T Consensus 303 ~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-~lT~g~~~v~~~~~-~d~~~i~f~ 380 (740)
T 4a5s_A 303 VARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT-FITKGTWEVIGIEA-LTSDYLYYI 380 (740)
T ss_dssp GGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE-ESCCSSSCEEEEEE-ECSSEEEEE
T ss_pred EEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE-ecccCCEEEEEEEE-EeCCEEEEE
Confidence 112 34555544 56674 45555 555 344 5888898776554 34434455665542 446665544
Q ss_pred eCC-----CcEEEEECCCCceEEEEEecc----cCCc--EEEEecCCCEEEEEeCC---CcEEEEEcCCC
Q 001042 1065 SSD-----GLLRFWENDDGGIKCVKNVTI----HSSA--ILSINAGDHWLGIGAAD---NSMSLFHRPQE 1120 (1178)
Q Consensus 1065 s~D-----g~I~iwd~~~~~~~~~~~~~~----h~~~--i~~is~dg~~Lasgs~D---g~I~iwd~~~~ 1120 (1178)
+.. +...+|.++.........+.. .... -.++|+++++++..... ..+.+++..++
T Consensus 381 ~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~ 450 (740)
T 4a5s_A 381 SNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVND 450 (740)
T ss_dssp ESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTT
T ss_pred EecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCC
Confidence 433 344555443321122222321 1122 34668999987765443 46777787644
No 170
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.60 E-value=3e-14 Score=179.31 Aligned_cols=282 Identities=7% Similarity=0.012 Sum_probs=196.0
Q ss_pred eEEecccccceEEEEeeeccceeccccccCCCCEEEEE--eCCCcEEEEcCCCCCceeeEeecccccce-----------
Q 001042 820 IRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISG--STDCLVKIWDPSLRGSELRATLKGHTRTV----------- 886 (1178)
Q Consensus 820 ~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasg--s~Dg~I~iWd~~~~~~~~~~~l~~h~~~V----------- 886 (1178)
...+.+|...|..++++ +++-+++++ +.++...||... .+.. ...+..|...+
T Consensus 16 ~~~~~~~~~~~~~~~~s------------~~~~~~~~~~~~~~~~~~l~~~~-~~~~-~~~l~~~~~~~~~~~~~~~~~~ 81 (662)
T 3azo_A 16 AALVASRSGRPACVGAV------------GDEVWWVAPRPAEAGRATLVRRR-ADGA-EESALPAPWNVRNRVFEYSGFP 81 (662)
T ss_dssp HHHHHHTCSCCEEEEEE------------TTEEEEEEEETTTTTEEEEEEEC-TTSC-EEESSCTTCCBCCCGGGTCCCC
T ss_pred HHHHhhcCCccceeEEc------------CCeEEEEecCcccCCcEEEEEEC-CCCC-cceeCCCCccccccccccCCcc
Confidence 34578899999999997 666666776 568899999863 2333 34455554332
Q ss_pred EEEe--cCCCE-EEEEeC-CCcEEEEECC--C-CcEEEEecC-----CCCceEEEEEe-CCCeEEEEeCC----------
Q 001042 887 RAIN--SDRGK-VVSGSD-DQSVLVWDKQ--T-SQLLEELKG-----HDAQVSCVRML-SGERVLTASHD---------- 943 (1178)
Q Consensus 887 ~~~s--~d~~~-l~sgs~-dg~I~iwd~~--t-~~~~~~l~~-----h~~~V~~l~~~-~~~~l~sgs~d---------- 943 (1178)
..++ |||+. |+.++. +..|.+|++. + ++ ...+.. |...+..++|+ +++.|++++.+
T Consensus 82 ~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~ 160 (662)
T 3azo_A 82 WAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVR 160 (662)
T ss_dssp EEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEE
T ss_pred ceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCce
Confidence 2344 99998 776654 5667777765 3 43 455655 67788999999 78888888876
Q ss_pred CeEEEEeCCC------CeEEEEec-CCCCCEEEEEEeCCCCEEEEEeCC--------CeEEEEECC-CC---ceEEEEec
Q 001042 944 GTVKMWDVRT------DTCVATVG-RCSSAVLCMEYDDSTGILAAGGRD--------AVANIWDIR-AG---RQMHKFLG 1004 (1178)
Q Consensus 944 g~V~iwd~~~------~~~~~~~~-~~~~~I~~l~~sp~~~~l~sgs~d--------g~I~lwD~~-~~---~~~~~~~~ 1004 (1178)
..|++||+.+ ++. ..+. .+...+..++|+|||+.|+.++.+ ..|++||+. ++ +......+
T Consensus 161 ~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~ 239 (662)
T 3azo_A 161 RFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG 239 (662)
T ss_dssp EEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE
T ss_pred eEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC
Confidence 5899999988 554 3444 555678889999999999987754 379999998 56 44444445
Q ss_pred CCccEEEEEEc--CCEEEEEeCCC--cEEEEEcCCCeeeeEeccCCCc--------EEEEEEecCCCEEEEEeCCCcEEE
Q 001042 1005 HTKWIRSIRMD--RDTVITGSDDW--TARMWSISRGTCDAVLACHAGP--------VQCVEYSSSDRGIITGSSDGLLRF 1072 (1178)
Q Consensus 1005 ~~~~v~~l~~~--~~~l~sgs~dg--~I~iwd~~~~~~~~~~~~h~~~--------I~~l~~spdg~~L~sgs~Dg~I~i 1072 (1178)
+...+..++|+ ++.+++++.++ .|.+||..+++.......+... +.+++|+++++++++++. +.+++
T Consensus 240 ~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l 318 (662)
T 3azo_A 240 PEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVL 318 (662)
T ss_dssp TTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEE
T ss_pred CCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEE
Confidence 57889999995 45777777888 5666776666654433333222 567899999999999998 99999
Q ss_pred E--ECCCCceEEEEEecccCCcEEEE-ecCCCEEE--EEeCCCc--EEEEEcCCCc
Q 001042 1073 W--ENDDGGIKCVKNVTIHSSAILSI-NAGDHWLG--IGAADNS--MSLFHRPQER 1121 (1178)
Q Consensus 1073 w--d~~~~~~~~~~~~~~h~~~i~~i-s~dg~~La--sgs~Dg~--I~iwd~~~~~ 1121 (1178)
| |..+++ ...+..|...+..+ +++++.++ +++.+.. |.+||+.+++
T Consensus 319 ~~~d~~~~~---~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~ 371 (662)
T 3azo_A 319 GILDPESGE---LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGR 371 (662)
T ss_dssp EEEETTTTE---EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEEECCCCc---EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 9 555552 45667777777777 77776443 3444544 5555655543
No 171
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.60 E-value=1.8e-14 Score=168.40 Aligned_cols=271 Identities=8% Similarity=-0.022 Sum_probs=174.8
Q ss_pred eEEEEecCCCCcccccccc-----eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceeccc
Q 001042 771 WVQSMFSREASSRSHSFSR-----VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLV 845 (1178)
Q Consensus 771 i~~~aFSpdg~~las~~~d-----I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~ 845 (1178)
+..++|||||++++.+... |.+||+++++ ..+...++......+.|+
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~-------------------~~~l~~~~~~~~~~~~~s--------- 89 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQ-------------------AVQLTEGKGDNTFGGFIS--------- 89 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTE-------------------EEECCCSSCBCTTTCEEC---------
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCc-------------------EEEeecCCCCccccceEC---------
Confidence 5567999999998776432 7788887665 222222222222235565
Q ss_pred cccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceE---------------------EEecCCCEEEEE-----
Q 001042 846 GDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR---------------------AINSDRGKVVSG----- 899 (1178)
Q Consensus 846 ~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~---------------------~~s~d~~~l~sg----- 899 (1178)
|||+.|+.++.++.|++||+.. .+.......+..... +++|+++.++.+
T Consensus 90 ---pdg~~l~~~~~~~~l~~~d~~~--~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~ 164 (396)
T 3c5m_A 90 ---TDERAFFYVKNELNLMKVDLET--LEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHT 164 (396)
T ss_dssp ---TTSSEEEEEETTTEEEEEETTT--CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHT
T ss_pred ---CCCCEEEEEEcCCcEEEEECCC--CCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccC
Confidence 9999999999999999999763 333333332322111 235666655543
Q ss_pred eCCCcEEEEECCCCcEEEEecCCCCceEEEEEeC--CCeEEEEeCC------CeEEEEeCCCCeEEEEecCC-CCCEEEE
Q 001042 900 SDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLS--GERVLTASHD------GTVKMWDVRTDTCVATVGRC-SSAVLCM 970 (1178)
Q Consensus 900 s~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~~--~~~l~sgs~d------g~V~iwd~~~~~~~~~~~~~-~~~I~~l 970 (1178)
..+..|.+||+.+++..... .+...+..+.|++ +..++.++.+ ..|.+||+.+++........ ...+..+
T Consensus 165 ~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~ 243 (396)
T 3c5m_A 165 NPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHE 243 (396)
T ss_dssp CCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEE
T ss_pred CCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccce
Confidence 35678999999988765544 4667789999986 5556666543 46889998766543332211 2357889
Q ss_pred EEeCCCCEEEEEeCC-----CeEEEEECCCCceEEEEecCCccEEEEEE---cCCEEEEEe----------------CCC
Q 001042 971 EYDDSTGILAAGGRD-----AVANIWDIRAGRQMHKFLGHTKWIRSIRM---DRDTVITGS----------------DDW 1026 (1178)
Q Consensus 971 ~~sp~~~~l~sgs~d-----g~I~lwD~~~~~~~~~~~~~~~~v~~l~~---~~~~l~sgs----------------~dg 1026 (1178)
+|+|+|+.|+.++.+ +.|++||+.+++........ . .. +.| +++.+++++ .++
T Consensus 244 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~ 320 (396)
T 3c5m_A 244 FWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP-P-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDP 320 (396)
T ss_dssp EECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC-S-EE-EEEECSSSSEEEEEECCC----------CCCCCC
T ss_pred EECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC-C-CC-CCccCCCCceEEEecCCcceeeccccccccCCCC
Confidence 999999988777543 45999999988754332221 1 22 555 455666654 347
Q ss_pred cEEEEEcCCCeeeeEeccCCC-----------cEEEEEEecCCCEEEEEeC-CCcEEE--EECCCCc
Q 001042 1027 TARMWSISRGTCDAVLACHAG-----------PVQCVEYSSSDRGIITGSS-DGLLRF--WENDDGG 1079 (1178)
Q Consensus 1027 ~I~iwd~~~~~~~~~~~~h~~-----------~I~~l~~spdg~~L~sgs~-Dg~I~i--wd~~~~~ 1079 (1178)
.|++||+.+++.. .+..+.. .+..++|+|+|+.|+.++. ++...+ +++.++.
T Consensus 321 ~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~ 386 (396)
T 3c5m_A 321 FLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESY 386 (396)
T ss_dssp EEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTC
T ss_pred cEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccc
Confidence 8999999887653 4444443 2567899999999887764 455444 4555553
No 172
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.60 E-value=3e-13 Score=156.92 Aligned_cols=239 Identities=8% Similarity=0.035 Sum_probs=165.1
Q ss_pred cccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeec--cccc-ceEEEecCCCE--EEEEe
Q 001042 826 HAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLK--GHTR-TVRAINSDRGK--VVSGS 900 (1178)
Q Consensus 826 H~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~--~h~~-~V~~~s~d~~~--l~sgs 900 (1178)
+...+..++|+ |||++|++++.+ .|.+|++.. ..+...... .+.. .-.+++|+|++ ++++.
T Consensus 38 ~~~~~~~~a~s------------pdg~~l~~~~~~-~v~~~~~~~-~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~ 103 (365)
T 1jof_A 38 QDEPISWMTFD------------HERKNIYGAAMK-KWSSFAVKS-PTEIVHEASHPIGGHPRANDADTNTRAIFLLAAK 103 (365)
T ss_dssp TTCCCSEEEEC------------TTSSEEEEEEBT-EEEEEEEEE-TTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECS
T ss_pred CCCCCcEEEEC------------CCCCEEEEEccc-eEEEEEECC-CCCEEEeeEeecCCCCccEEECCCCCEEEEEEec
Confidence 33467788887 899999999888 999999751 223322211 1111 11356899995 44553
Q ss_pred -------------CCCcEEEEECC-CCcEEEEec----CCCCceEEEEEe-CCCeEEEEeC-CCeEEEEeCC-CCeEE--
Q 001042 901 -------------DDQSVLVWDKQ-TSQLLEELK----GHDAQVSCVRML-SGERVLTASH-DGTVKMWDVR-TDTCV-- 957 (1178)
Q Consensus 901 -------------~dg~I~iwd~~-t~~~~~~l~----~h~~~V~~l~~~-~~~~l~sgs~-dg~V~iwd~~-~~~~~-- 957 (1178)
.+|.+.+|++. +++....+. .+...+.+++|+ +++.++++.. ++.|.+||+. +++..
T Consensus 104 ~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~ 183 (365)
T 1jof_A 104 QPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELV 183 (365)
T ss_dssp STTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEE
T ss_pred CCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEe
Confidence 68999999997 466554443 256789999999 6677777654 6899999998 77643
Q ss_pred EEec--CCCCCEEEEEEeCCCCEEEEEeC-CCeEEEEECC--CCceE---EEEec-------CCc------cEEEEE-Ec
Q 001042 958 ATVG--RCSSAVLCMEYDDSTGILAAGGR-DAVANIWDIR--AGRQM---HKFLG-------HTK------WIRSIR-MD 1015 (1178)
Q Consensus 958 ~~~~--~~~~~I~~l~~sp~~~~l~sgs~-dg~I~lwD~~--~~~~~---~~~~~-------~~~------~v~~l~-~~ 1015 (1178)
..+. .+...+..++|+|+|+++++++. ++.|.+|++. +++.. ..+.. +.. .+..++ ++
T Consensus 184 ~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~s 263 (365)
T 1jof_A 184 GSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALT 263 (365)
T ss_dssp EEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEEC
T ss_pred eeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEEC
Confidence 3333 23567899999999999888775 6899999765 56542 12221 121 578888 85
Q ss_pred --CCEEEEEeCC-C-----cEEEEEcC-CCeeee---EeccCCCcEEEEEEec---CCCEEEEEeCC-CcEEEEECCCC
Q 001042 1016 --RDTVITGSDD-W-----TARMWSIS-RGTCDA---VLACHAGPVQCVEYSS---SDRGIITGSSD-GLLRFWENDDG 1078 (1178)
Q Consensus 1016 --~~~l~sgs~d-g-----~I~iwd~~-~~~~~~---~~~~h~~~I~~l~~sp---dg~~L~sgs~D-g~I~iwd~~~~ 1078 (1178)
++++++++.+ + .|.+|++. +++... ....+...+..++|+| +|++|++++.+ +.|.+|+++..
T Consensus 264 pdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 264 FSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 4567666543 2 89999996 565443 2333455677899999 89999998864 89999999876
No 173
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.59 E-value=1.1e-13 Score=174.17 Aligned_cols=286 Identities=12% Similarity=0.020 Sum_probs=191.3
Q ss_pred ccccCCcceEEEEecCCCCccccc--ccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceE-------
Q 001042 763 EASGIGRSWVQSMFSREASSRSHS--FSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAIT------- 831 (1178)
Q Consensus 763 ~~~gh~~~i~~~aFSpdg~~las~--~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~------- 831 (1178)
...+|...+...+||+|+.++++. +.+ ..||....+. ..+.+.+|...|.
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~l~~~~~~~~~~~~~~~ 78 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADG-------------------AEESALPAPWNVRNRVFEYS 78 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTS-------------------CEEESSCTTCCBCCCGGGTC
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCC-------------------CcceeCCCCccccccccccC
Confidence 356788899999999998777776 333 8888864333 2445555655554
Q ss_pred --EEEeeeccceeccccccCCCCE-EEEEeC-CCcEEEEcCCCCC-ceeeEeecc-----cccceE--EEecCCCEEEEE
Q 001042 832 --ALHCVTKREVWDLVGDREDAGF-FISGST-DCLVKIWDPSLRG-SELRATLKG-----HTRTVR--AINSDRGKVVSG 899 (1178)
Q Consensus 832 --~l~fs~~~~~~~~~~~s~d~~~-Lasgs~-Dg~I~iWd~~~~~-~~~~~~l~~-----h~~~V~--~~s~d~~~l~sg 899 (1178)
...|+ .||||+. |+.++. +..|.+|++...+ ... ..+.. |...+. +|+|||+.|+++
T Consensus 79 ~~~~~~~----------~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~-~~l~~~~~~~~~~~~~~~~~spDg~~l~~~ 147 (662)
T 3azo_A 79 GFPWAGV----------PRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVP-RPLTPVSAVGGGLRWADPVLLPERGEVWCM 147 (662)
T ss_dssp CCCEEEE----------CCSSSSCEEEEEBTTTCCEEEECTTSTTCCCC-EECSCCCCSTTCEEEEEEEEETTTTEEEEE
T ss_pred Cccceee----------eecCCCeEEEEEECCCCeEEEEcCCCCCCCCC-EeccCCccCCCCccccCcEECCCCCEEEEE
Confidence 44443 1388998 776654 4566666643002 222 33444 444444 579999999998
Q ss_pred eCC----------CcEEEEECCC------CcEEEEec-CCCCceEEEEEe-CCCeEEEEeCC--------CeEEEEeCC-
Q 001042 900 SDD----------QSVLVWDKQT------SQLLEELK-GHDAQVSCVRML-SGERVLTASHD--------GTVKMWDVR- 952 (1178)
Q Consensus 900 s~d----------g~I~iwd~~t------~~~~~~l~-~h~~~V~~l~~~-~~~~l~sgs~d--------g~V~iwd~~- 952 (1178)
+.+ ..|++||+.+ ++. ..+. .+...+..++|+ +++.|+.++.+ ..|.+||+.
T Consensus 148 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~ 226 (662)
T 3azo_A 148 AEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTE 226 (662)
T ss_dssp EEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECT
T ss_pred EecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECC
Confidence 877 5899999988 554 4555 666788889999 78888877754 479999998
Q ss_pred CC---eEEEEecCCCCCEEEEEEeCCCCEEEEEeCCC--eEEEEECCCCceEEEEecCCcc--------EEEEEEc--CC
Q 001042 953 TD---TCVATVGRCSSAVLCMEYDDSTGILAAGGRDA--VANIWDIRAGRQMHKFLGHTKW--------IRSIRMD--RD 1017 (1178)
Q Consensus 953 ~~---~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg--~I~lwD~~~~~~~~~~~~~~~~--------v~~l~~~--~~ 1017 (1178)
++ +.......+...+..++|+|||+++++++.+| .|.+||..+++.......+... +.++++. +.
T Consensus 227 ~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~ 306 (662)
T 3azo_A 227 DGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGL 306 (662)
T ss_dssp TSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSC
T ss_pred CCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCE
Confidence 57 44444445578899999999999888887788 6777777677654433333221 4567773 55
Q ss_pred EEEEEeCCCcEEEE--EcCCCeeeeEeccCCCcEEEE-EEecCCCEEEEEeCCC--cEEEEECCCCceE
Q 001042 1018 TVITGSDDWTARMW--SISRGTCDAVLACHAGPVQCV-EYSSSDRGIITGSSDG--LLRFWENDDGGIK 1081 (1178)
Q Consensus 1018 ~l~sgs~dg~I~iw--d~~~~~~~~~~~~h~~~I~~l-~~spdg~~L~sgs~Dg--~I~iwd~~~~~~~ 1081 (1178)
.+++++. +.+++| |..+++ +..+..|.+.+..+ +++.+.-.+++++.+. .|..||+.+++..
T Consensus 307 ~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~ 373 (662)
T 3azo_A 307 IAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRAR 373 (662)
T ss_dssp EEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred EEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceE
Confidence 7888888 999999 555555 57777777778777 5543333344455554 4556677677433
No 174
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.55 E-value=1.2e-12 Score=149.59 Aligned_cols=256 Identities=7% Similarity=-0.064 Sum_probs=185.7
Q ss_pred CCCcEEEEECCCCcEEEEec------CCCCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeC
Q 001042 901 DDQSVLVWDKQTSQLLEELK------GHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDD 974 (1178)
Q Consensus 901 ~dg~I~iwd~~t~~~~~~l~------~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp 974 (1178)
.++.|.+||.++++....+. ........+.+.++..+++...++.|.+||..+++.+.++. .......+++++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~ 93 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLS 93 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeC
Confidence 37899999999998765442 12244677877766666777778999999999999988884 346789999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceEEEEecCC-----ccEEEEEEcCCEEEEEe--CCCcEEEEEcCCCeeeeEeccCCC
Q 001042 975 STGILAAGGRDAVANIWDIRAGRQMHKFLGHT-----KWIRSIRMDRDTVITGS--DDWTARMWSISRGTCDAVLACHAG 1047 (1178)
Q Consensus 975 ~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~-----~~v~~l~~~~~~l~sgs--~dg~I~iwd~~~~~~~~~~~~h~~ 1047 (1178)
+++..++...++.|.+||..+++....+.... .....++++++.++++. .++.|.+||..+++....+... .
T Consensus 94 ~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~ 172 (328)
T 3dsm_A 94 DEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-I 172 (328)
T ss_dssp TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-S
T ss_pred CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-C
Confidence 88544444378999999999998887765433 14556666777766666 4889999999999888877643 3
Q ss_pred cEEEEEEecCCCEEEEEeCC----------CcEEEEECCCCceEEEEEec---ccCCcEEEEecCCCEEEEEeCCCcEEE
Q 001042 1048 PVQCVEYSSSDRGIITGSSD----------GLLRFWENDDGGIKCVKNVT---IHSSAILSINAGDHWLGIGAADNSMSL 1114 (1178)
Q Consensus 1048 ~I~~l~~spdg~~L~sgs~D----------g~I~iwd~~~~~~~~~~~~~---~h~~~i~~is~dg~~Lasgs~Dg~I~i 1114 (1178)
....++++++|++++++..+ +.|.+||..+++ ....+. +....-.+++|+++.+.++.. .|.+
T Consensus 173 ~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~--v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~ 248 (328)
T 3dsm_A 173 QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFT--VEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWR 248 (328)
T ss_dssp CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTE--EEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEE
T ss_pred CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCe--EEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEE
Confidence 45789999999977766554 789999999884 333333 223344677899999888755 8999
Q ss_pred EEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcC-CCCEEEEE----eCCCcEEEEECC
Q 001042 1115 FHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDL-ERKRICSG----GRNGLLRLWEAT 1175 (1178)
Q Consensus 1115 wd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafsp-dg~~Las~----s~Dg~V~IWdv~ 1175 (1178)
||..++++... . ....+......++++| ++.+.++. ..++.|.+||.+
T Consensus 249 ~d~~t~~~~~~----------~---~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 249 MPVEADRVPVR----------P---FLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp EETTCSSCCSS----------C---SBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred EECCCCceeee----------e---eecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 99975532100 0 0111135688999999 55555655 578999999987
No 175
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.53 E-value=5.3e-11 Score=145.24 Aligned_cols=320 Identities=11% Similarity=0.061 Sum_probs=218.0
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCCceeeEeeccccc-ceEEEecCCCEEEEEeCCCcEEEEECC--CCcEEEEecCCCCc
Q 001042 849 EDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTR-TVRAINSDRGKVVSGSDDQSVLVWDKQ--TSQLLEELKGHDAQ 925 (1178)
Q Consensus 849 ~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~-~V~~~s~d~~~l~sgs~dg~I~iwd~~--t~~~~~~l~~h~~~ 925 (1178)
+++.++++...+++|.++|.. +.+....+..... .-..+++||+++++++.|+.|.+||+. +++.+..+.... .
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~--t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~ 241 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGS--TYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-E 241 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETT--TCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-E
T ss_pred CCceEEEEeCCCCeEEEEECC--CCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-C
Confidence 445677788889999999976 4455555543322 234689999999999999999999996 888888887533 4
Q ss_pred eEEEEEe-----CCCeEEEEe-CCCeEEEEeCCCCeEEEEecCC-----------CCCEEEEEEeCCCCEEE-EEeCCCe
Q 001042 926 VSCVRML-----SGERVLTAS-HDGTVKMWDVRTDTCVATVGRC-----------SSAVLCMEYDDSTGILA-AGGRDAV 987 (1178)
Q Consensus 926 V~~l~~~-----~~~~l~sgs-~dg~V~iwd~~~~~~~~~~~~~-----------~~~I~~l~~sp~~~~l~-sgs~dg~ 987 (1178)
...++++ +++++++++ .+++|.++|..+.+.+..+... ...+..+..++++..++ ....+|.
T Consensus 242 P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~ 321 (567)
T 1qks_A 242 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK 321 (567)
T ss_dssp EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe
Confidence 6788898 677777665 4699999999999988776421 22678888888766544 4456799
Q ss_pred EEEEECCCCceEEEE-ecCCccEEEEEEcC--CEEEEEe-CCCcEEEEEcCCCeeeeEecc-----CCCcEEEEEEecCC
Q 001042 988 ANIWDIRAGRQMHKF-LGHTKWIRSIRMDR--DTVITGS-DDWTARMWSISRGTCDAVLAC-----HAGPVQCVEYSSSD 1058 (1178)
Q Consensus 988 I~lwD~~~~~~~~~~-~~~~~~v~~l~~~~--~~l~sgs-~dg~I~iwd~~~~~~~~~~~~-----h~~~I~~l~~spdg 1058 (1178)
|.++|..+.+..... .........+.|++ ++++++. .++.|.++|+.+++....+.. |.+.-..+ ++|++
T Consensus 322 v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~ 400 (567)
T 1qks_A 322 ILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTF 400 (567)
T ss_dssp EEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTT
T ss_pred EEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCC
Confidence 999999876533221 12334566777854 5655544 678999999999988766653 33222222 58875
Q ss_pred CEEE-EEe-CCCcEEEEECCCCc-----eEEEEEecccCCc--EEEEecCCCEEEEEeC-------CCcEEEEEcCCCcc
Q 001042 1059 RGII-TGS-SDGLLRFWENDDGG-----IKCVKNVTIHSSA--ILSINAGDHWLGIGAA-------DNSMSLFHRPQERL 1122 (1178)
Q Consensus 1059 ~~L~-sgs-~Dg~I~iwd~~~~~-----~~~~~~~~~h~~~--i~~is~dg~~Lasgs~-------Dg~I~iwd~~~~~~ 1122 (1178)
..++ ++. .++.|.++|..+++ ++.+..+...... -...+|+++++.+... .++|.++|+.+.+.
T Consensus 401 g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~ 480 (567)
T 1qks_A 401 GPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTG 480 (567)
T ss_dssp EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCC
T ss_pred CcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccc
Confidence 5554 443 46899999998732 3566666544222 2456899999998763 35999999975311
Q ss_pred ccccCCCCCccceeEeec-----cCCCcccEEEEEEcCCCCEEEEEe-----CCCcEEEEECCCCC
Q 001042 1123 GGFSGTGSKMSGWQLYRT-----PQKTVAVVRCIASDLERKRICSGG-----RNGLLRLWEATINI 1178 (1178)
Q Consensus 1123 ~~~~~~g~~~~~~~~~~~-----~~~h~~~V~~lafspdg~~Las~s-----~Dg~V~IWdv~tg~ 1178 (1178)
+|.. ..++.+.. +..-...+..+.|++||+.+..+. .++.|.|+|.+|++
T Consensus 481 -----~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~ 540 (567)
T 1qks_A 481 -----DGSD-PEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLE 540 (567)
T ss_dssp -----SSSC-CCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred -----cccC-CCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCce
Confidence 1111 01122211 111234688999999999877663 37999999998863
No 176
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.53 E-value=1.9e-12 Score=147.94 Aligned_cols=239 Identities=9% Similarity=0.052 Sum_probs=169.3
Q ss_pred CCceEEEEEe-CCCeEEEEeCC------------------------CeEEEEeCCCCeEEEEec-CCCCCEEEEEEeCCC
Q 001042 923 DAQVSCVRML-SGERVLTASHD------------------------GTVKMWDVRTDTCVATVG-RCSSAVLCMEYDDST 976 (1178)
Q Consensus 923 ~~~V~~l~~~-~~~~l~sgs~d------------------------g~V~iwd~~~~~~~~~~~-~~~~~I~~l~~sp~~ 976 (1178)
-+.+.+++++ +++.+++...+ ++|.+||..+++....+. .+-.....++++++|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 3567788887 45555555555 479999999998877664 334578999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCc-eEEEE---------ecCCccEEEEEEcC---CEEEEEe-CCCcEEEEEcCCCeeeeEe
Q 001042 977 GILAAGGRDAVANIWDIRAGR-QMHKF---------LGHTKWIRSIRMDR---DTVITGS-DDWTARMWSISRGTCDAVL 1042 (1178)
Q Consensus 977 ~~l~sgs~dg~I~lwD~~~~~-~~~~~---------~~~~~~v~~l~~~~---~~l~sgs-~dg~I~iwd~~~~~~~~~~ 1042 (1178)
+++++...++.|++||..... .+..+ ..+......+++++ +.+++.+ .++.|++|| .+++.+..+
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~ 181 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW 181 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence 988888889999999976542 45555 23344788999975 3555554 689999999 667777766
Q ss_pred ccC----------CCcEEEEEEecC-CCEEEEEeCCCcEEEEECCCCceEEEEEe--cccCCcEEEE--ec------CCC
Q 001042 1043 ACH----------AGPVQCVEYSSS-DRGIITGSSDGLLRFWENDDGGIKCVKNV--TIHSSAILSI--NA------GDH 1101 (1178)
Q Consensus 1043 ~~h----------~~~I~~l~~spd-g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~--~~h~~~i~~i--s~------dg~ 1101 (1178)
... -....+++++|+ +.++++...++.|++||..+++ .+..+ ..+...+.++ +| +|+
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~--~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~ 259 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKE--FVREIKHASFGRNVFAISYIPGFLFAVNGK 259 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCC--EEEEECCTTTTTCEEEEEEETTEEEEEECC
T ss_pred ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCc--EEEEEeccccCCCcceeeecCCEEEEeCCC
Confidence 432 234899999998 7777777789999999999774 44444 3444455444 56 333
Q ss_pred EEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001042 1102 WLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATI 1176 (1178)
Q Consensus 1102 ~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~t 1176 (1178)
..++.+.+..|++|+..+++... ......++.....+++++|||.++++...++.|++|+++.
T Consensus 260 ~~v~~~~~~~v~~~~~~~g~~~~------------~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 260 PYFGDQEPVQGFVMNFSSGEIID------------VFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CCTTCSCCCCEEEEETTTCCEEE------------EECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EEeccCCCcEEEEEEcCCCeEEE------------EEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 33333445689999987442211 1111235667799999999998888888999999999753
No 177
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.51 E-value=1.4e-11 Score=140.77 Aligned_cols=236 Identities=12% Similarity=0.103 Sum_probs=177.3
Q ss_pred ccceEEEEeeeccceeccccccCCCCEEEEEeCC------------------------CcEEEEcCCCCCceeeEeec-c
Q 001042 827 AGAITALHCVTKREVWDLVGDREDAGFFISGSTD------------------------CLVKIWDPSLRGSELRATLK-G 881 (1178)
Q Consensus 827 ~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~D------------------------g~I~iWd~~~~~~~~~~~l~-~ 881 (1178)
-+.+.+|+++ ++|+++++.+.+ ++|.+||.. +........ +
T Consensus 23 l~~v~~va~d------------~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~--~g~~~~~~~~~ 88 (329)
T 3fvz_A 23 PGQVSGVALD------------SKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPN--NAEILQSSGKN 88 (329)
T ss_dssp CSCEEEEEEC------------TTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTT--TCCEEEEECTT
T ss_pred cCCceEEEEC------------CCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECC--CCeEEeccCCC
Confidence 4568999987 889999988877 479999965 333333333 3
Q ss_pred cccceE--EEecCCCEEEEEeCCCcEEEEECCCCc-EEEEe---------cCCCCceEEEEEeC--CCeEEEEe-CCCeE
Q 001042 882 HTRTVR--AINSDRGKVVSGSDDQSVLVWDKQTSQ-LLEEL---------KGHDAQVSCVRMLS--GERVLTAS-HDGTV 946 (1178)
Q Consensus 882 h~~~V~--~~s~d~~~l~sgs~dg~I~iwd~~t~~-~~~~l---------~~h~~~V~~l~~~~--~~~l~sgs-~dg~V 946 (1178)
+-.... +++++|+.+++...++.|++||..... .+..+ .++......+++++ +..+++.+ .++.|
T Consensus 89 ~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I 168 (329)
T 3fvz_A 89 LFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRI 168 (329)
T ss_dssp TCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEE
T ss_pred ccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeE
Confidence 323333 568999988888889999999986542 45555 34455788999984 44555554 58999
Q ss_pred EEEeCCCCeEEEEecCCC----------CCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCceEEEEe--cCCccEEEEE
Q 001042 947 KMWDVRTDTCVATVGRCS----------SAVLCMEYDDS-TGILAAGGRDAVANIWDIRAGRQMHKFL--GHTKWIRSIR 1013 (1178)
Q Consensus 947 ~iwd~~~~~~~~~~~~~~----------~~I~~l~~sp~-~~~l~sgs~dg~I~lwD~~~~~~~~~~~--~~~~~v~~l~ 1013 (1178)
++|| .+++.+..+.... .....++++|+ +.++++...++.|++||..+++.+..+. .+...+.+++
T Consensus 169 ~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~ 247 (329)
T 3fvz_A 169 VQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAIS 247 (329)
T ss_dssp EEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEE
T ss_pred EEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceee
Confidence 9999 5677776664322 34889999998 7777777788999999999898888874 3556788888
Q ss_pred EcCCEEEEEe--------CCCcEEEEEcCCCeeeeEec---cCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 001042 1014 MDRDTVITGS--------DDWTARMWSISRGTCDAVLA---CHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDD 1077 (1178)
Q Consensus 1014 ~~~~~l~sgs--------~dg~I~iwd~~~~~~~~~~~---~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~ 1077 (1178)
+.+..++... .+..|++||..+++.+..+. ++...+.+++++|+|..+++...++.|++|++..
T Consensus 248 ~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 248 YIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred ecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 8775444332 34589999999999988874 5667799999999998888888999999999764
No 178
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.51 E-value=8.5e-12 Score=138.99 Aligned_cols=235 Identities=11% Similarity=0.135 Sum_probs=166.4
Q ss_pred CCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecC------CCCCEEEEEEe-CCCCEEEEEeC-CCeEEEE
Q 001042 921 GHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGR------CSSAVLCMEYD-DSTGILAAGGR-DAVANIW 991 (1178)
Q Consensus 921 ~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~------~~~~I~~l~~s-p~~~~l~sgs~-dg~I~lw 991 (1178)
++-....++++. ++..+++...++.|.+||.. ++.+..+.. +...+.+++++ ++++++++... ++.|.+|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 445678899998 56666676789999999987 666665532 23568899995 66666655543 8899999
Q ss_pred ECCCCceEEEEec-CCccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCeeeeEec--cCCCcEEEEEEecCCCEEEEEeC
Q 001042 992 DIRAGRQMHKFLG-HTKWIRSIRMD--RDTVITGSDDWTARMWSISRGTCDAVLA--CHAGPVQCVEYSSSDRGIITGSS 1066 (1178)
Q Consensus 992 D~~~~~~~~~~~~-~~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~--~h~~~I~~l~~spdg~~L~sgs~ 1066 (1178)
| .+++.+..+.. +...+.+++++ ++.+++...++.|.+||. +++....+. .+...+.+++++++|+.+++.+.
T Consensus 106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~ 183 (286)
T 1q7f_A 106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR 183 (286)
T ss_dssp C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG
T ss_pred C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCCEEEEECC
Confidence 9 66777766643 34578889985 446666677899999995 455555554 34457899999999998888888
Q ss_pred CCcEEEEECCCCceEEEEEeccc--CCcE--EEEecCCCEEEEEeCCC-cEEEEEcCCCccccccCCCCCccceeEeecc
Q 001042 1067 DGLLRFWENDDGGIKCVKNVTIH--SSAI--LSINAGDHWLGIGAADN-SMSLFHRPQERLGGFSGTGSKMSGWQLYRTP 1141 (1178)
Q Consensus 1067 Dg~I~iwd~~~~~~~~~~~~~~h--~~~i--~~is~dg~~Lasgs~Dg-~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~ 1141 (1178)
++.|++||.... .+..+..+ .... .+++++|+++++...++ .|.+|+... ..+.. ...
T Consensus 184 ~~~i~~~~~~g~---~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g----------~~~~~---~~~- 246 (286)
T 1q7f_A 184 AHCVKVFNYEGQ---YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG----------QLISA---LES- 246 (286)
T ss_dssp GTEEEEEETTCC---EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS----------CEEEE---EEE-
T ss_pred CCEEEEEcCCCC---EEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC----------CEEEE---Ecc-
Confidence 999999997543 33444332 2334 44578999888888776 999999642 11111 111
Q ss_pred CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001042 1142 QKTVAVVRCIASDLERKRICSGGRNGLLRLWEATI 1176 (1178)
Q Consensus 1142 ~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~t 1176 (1178)
......+.+++++|+|+++++ +.|++|++|++..
T Consensus 247 ~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 247 KVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp SSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred cCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 122234789999999987777 6799999999865
No 179
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.50 E-value=1.6e-11 Score=136.82 Aligned_cols=234 Identities=11% Similarity=0.191 Sum_probs=169.1
Q ss_pred ccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeec------ccccceEE--Ee-cCCCE
Q 001042 825 GHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLK------GHTRTVRA--IN-SDRGK 895 (1178)
Q Consensus 825 gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~------~h~~~V~~--~s-~d~~~ 895 (1178)
+|-....+++++ ++++++++.+.++.|.+||.+ +. ....+. +|...+.+ +. +++..
T Consensus 27 g~~~~p~~v~~~------------~~g~l~v~~~~~~~i~~~d~~--g~-~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l 91 (286)
T 1q7f_A 27 GQFTEPSGVAVN------------AQNDIIVADTNNHRIQIFDKE--GR-FKFQFGECGKRDSQLLYPNRVAVVRNSGDI 91 (286)
T ss_dssp TCBSCEEEEEEC------------TTCCEEEEEGGGTEEEEECTT--SC-EEEEECCBSSSTTCBSSEEEEEEETTTTEE
T ss_pred CccCCCceEEEC------------CCCCEEEEECCCCEEEEECCC--Cc-EEEEecccCCCcccccCceEEEEEcCCCeE
Confidence 556678888886 889999998899999999965 22 233332 23334443 43 45555
Q ss_pred EEEEeC-CCcEEEEECCCCcEEEEec-CCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEec--CCCCCEEEE
Q 001042 896 VVSGSD-DQSVLVWDKQTSQLLEELK-GHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVG--RCSSAVLCM 970 (1178)
Q Consensus 896 l~sgs~-dg~I~iwd~~t~~~~~~l~-~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~--~~~~~I~~l 970 (1178)
+++... ++.|.+|| .+++.+..+. .+...+.++++. ++..+++...++.|.+||.. ++.+..+. .+...+.++
T Consensus 92 ~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i 169 (286)
T 1q7f_A 92 IVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGV 169 (286)
T ss_dssp EEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEE
T ss_pred EEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEE
Confidence 555533 78999999 6677777664 344678899998 56666666678999999964 55555553 344578999
Q ss_pred EEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecC--CccEEEEEEcC--CEEEEEeCCC-cEEEEEcCCCeeeeEeccC
Q 001042 971 EYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGH--TKWIRSIRMDR--DTVITGSDDW-TARMWSISRGTCDAVLACH 1045 (1178)
Q Consensus 971 ~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~--~~~v~~l~~~~--~~l~sgs~dg-~I~iwd~~~~~~~~~~~~h 1045 (1178)
+++++|+++++...++.|.+||. +++.+..+..+ ...+..+++++ +.+++...++ .|.+||. +++.+..+..+
T Consensus 170 ~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~ 247 (286)
T 1q7f_A 170 VVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESK 247 (286)
T ss_dssp EECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEES
T ss_pred EECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEccc
Confidence 99999998877778899999997 45666666443 35788899854 4666666675 9999995 56666666654
Q ss_pred CC--cEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 001042 1046 AG--PVQCVEYSSSDRGIITGSSDGLLRFWENDDG 1078 (1178)
Q Consensus 1046 ~~--~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~ 1078 (1178)
.. .+.+++++|+|+++++ +.|+.|++|+....
T Consensus 248 ~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 248 VKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp SCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred CCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 33 4789999999987776 57999999998653
No 180
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.48 E-value=5.6e-11 Score=145.03 Aligned_cols=307 Identities=7% Similarity=0.019 Sum_probs=207.6
Q ss_pred Ccccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceeccccccCCCCEEEEEe
Q 001042 781 SSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGS 858 (1178)
Q Consensus 781 ~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs 858 (1178)
..+++...+ |.+||.++++ .+..+... ..+..+.|+ |||+++++++
T Consensus 168 ~~~V~~~~~~~V~viD~~t~~-------------------v~~~i~~g-~~p~~v~~S------------pDGr~lyv~~ 215 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTYE-------------------IKTVLDTG-YAVHISRLS------------ASGRYLFVIG 215 (567)
T ss_dssp EEEEEETTTTEEEEEETTTCC-------------------EEEEEECS-SCEEEEEEC------------TTSCEEEEEE
T ss_pred eEEEEeCCCCeEEEEECCCCe-------------------EEEEEeCC-CCccceEEC------------CCCCEEEEEc
Confidence 334444433 9999999877 45555432 245578887 9999999999
Q ss_pred CCCcEEEEcCCCCCceeeEeecccccc-eEEEe----cCCCEEEEEeC-CCcEEEEECCCCcEEEEecCC----------
Q 001042 859 TDCLVKIWDPSLRGSELRATLKGHTRT-VRAIN----SDRGKVVSGSD-DQSVLVWDKQTSQLLEELKGH---------- 922 (1178)
Q Consensus 859 ~Dg~I~iWd~~~~~~~~~~~l~~h~~~-V~~~s----~d~~~l~sgs~-dg~I~iwd~~t~~~~~~l~~h---------- 922 (1178)
.|+.|.+||+.....+....+.....+ -.+++ |||+++++++. ++++.++|..+.+.+..+...
T Consensus 216 ~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~ 295 (567)
T 1qks_A 216 RDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYH 295 (567)
T ss_dssp TTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEE
T ss_pred CCCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccccccccc
Confidence 999999999742233444555433333 33678 69999887765 589999999999998876532
Q ss_pred -CCceEEEEEe-CCC-eEEEEeCCCeEEEEeCCCCeEE--EEecCCCCCEEEEEEeCCCCEEEEEe-CCCeEEEEECCCC
Q 001042 923 -DAQVSCVRML-SGE-RVLTASHDGTVKMWDVRTDTCV--ATVGRCSSAVLCMEYDDSTGILAAGG-RDAVANIWDIRAG 996 (1178)
Q Consensus 923 -~~~V~~l~~~-~~~-~l~sgs~dg~V~iwd~~~~~~~--~~~~~~~~~I~~l~~sp~~~~l~sgs-~dg~I~lwD~~~~ 996 (1178)
...+..+..+ ++. .++....+|.|.++|..+.+.. ..+ ........+.|+|+|++++++. .++.|.++|+.++
T Consensus 296 p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~ 374 (567)
T 1qks_A 296 PEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG 374 (567)
T ss_dssp SCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred CCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCC
Confidence 1256777777 333 4555567799999999875432 222 2345677899999999987766 5789999999999
Q ss_pred ceEEEEec-----CCccEEEEEEcC--CE-EEEEe-CCCcEEEEEcCC-------CeeeeEeccCCCcEEEEEEecCCCE
Q 001042 997 RQMHKFLG-----HTKWIRSIRMDR--DT-VITGS-DDWTARMWSISR-------GTCDAVLACHAGPVQCVEYSSSDRG 1060 (1178)
Q Consensus 997 ~~~~~~~~-----~~~~v~~l~~~~--~~-l~sgs-~dg~I~iwd~~~-------~~~~~~~~~h~~~I~~l~~spdg~~ 1060 (1178)
+.+..+.. |.+.-..+ +++ .. .+++. .++.|.++|..+ .+.+.++......-..+..+|++++
T Consensus 375 kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~ 453 (567)
T 1qks_A 375 KLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQY 453 (567)
T ss_dssp EEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSE
T ss_pred cEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCe
Confidence 88776643 32211122 333 33 34443 568999999987 5667777654444345778999999
Q ss_pred EEEEeC-------CCcEEEEECCCCc----eEEEEEec--------ccCCcE--EEEecCCCEEEEEeC-----CCcEEE
Q 001042 1061 IITGSS-------DGLLRFWENDDGG----IKCVKNVT--------IHSSAI--LSINAGDHWLGIGAA-----DNSMSL 1114 (1178)
Q Consensus 1061 L~sgs~-------Dg~I~iwd~~~~~----~~~~~~~~--------~h~~~i--~~is~dg~~Lasgs~-----Dg~I~i 1114 (1178)
+++... .++|.++|+.+.+ ......+. .....+ ..++++|+.+.++.. ++.|.+
T Consensus 454 l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v 533 (567)
T 1qks_A 454 LYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVV 533 (567)
T ss_dssp EEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEE
T ss_pred EEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEE
Confidence 998763 3589999998651 12222222 112334 345899998877643 799999
Q ss_pred EEcCCCc
Q 001042 1115 FHRPQER 1121 (1178)
Q Consensus 1115 wd~~~~~ 1121 (1178)
+|..+.+
T Consensus 534 ~D~~t~~ 540 (567)
T 1qks_A 534 VDDKTLE 540 (567)
T ss_dssp EETTTTE
T ss_pred EECCCce
Confidence 9988654
No 181
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.47 E-value=2.2e-11 Score=138.90 Aligned_cols=262 Identities=12% Similarity=0.077 Sum_probs=179.3
Q ss_pred cceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceecccc
Q 001042 769 RSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVG 846 (1178)
Q Consensus 769 ~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~ 846 (1178)
..+..++|++++..+++.+.+ ++.|. +. ....+.++...+.+++|+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-------------------~~~~~~~~~~~~~~~~~~---------- 53 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTIT---AE-------------------PWLEISKKGLQLEGLNFD---------- 53 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEE---CE-------------------EEEEEESSCCCEEEEEEC----------
T ss_pred cccceeeecCCccceeEEeecccCcccc---cc-------------------eeEEEeccCccccCcEEC----------
Confidence 346667999999888876555 88892 22 455677777778899987
Q ss_pred ccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEE--EecCCCEEEEEeCC----CcEEEEECCCCcEEEEec
Q 001042 847 DREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDD----QSVLVWDKQTSQLLEELK 920 (1178)
Q Consensus 847 ~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~--~s~d~~~l~sgs~d----g~I~iwd~~t~~~~~~l~ 920 (1178)
++|++++++..++.|.+||.. +.+.......+...+.+ ++++|+.++++..+ +.|.+||.++++....+.
T Consensus 54 --~~g~l~~~~~~~~~i~~~d~~--~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~ 129 (333)
T 2dg1_A 54 --RQGQLFLLDVFEGNIFKINPE--TKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIE 129 (333)
T ss_dssp --TTSCEEEEETTTCEEEEECTT--TCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEEC
T ss_pred --CCCCEEEEECCCCEEEEEeCC--CCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEc
Confidence 889988888899999999976 33333333244455664 47888887777666 689999998877653433
Q ss_pred --CCCCceEEEEEeCCCeEEEEeC-------CCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEE-eCCCeEEE
Q 001042 921 --GHDAQVSCVRMLSGERVLTASH-------DGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAG-GRDAVANI 990 (1178)
Q Consensus 921 --~h~~~V~~l~~~~~~~l~sgs~-------dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sg-s~dg~I~l 990 (1178)
.+...+.++++.++..++.++. .+.|..+|..+++..... .....+..++|+|+++.++++ +.++.|.+
T Consensus 130 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~ 208 (333)
T 2dg1_A 130 DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVTETTANRLHR 208 (333)
T ss_dssp SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred cCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEee-cCCCcccceEECCCCCEEEEEeCCCCeEEE
Confidence 3456788999984444444443 366777777665543332 223457899999999866554 46789999
Q ss_pred EECCC-CceEEEE-----ecC--CccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCeeeeEeccCCC------cEEEEEE
Q 001042 991 WDIRA-GRQMHKF-----LGH--TKWIRSIRMD--RDTVITGSDDWTARMWSISRGTCDAVLACHAG------PVQCVEY 1054 (1178)
Q Consensus 991 wD~~~-~~~~~~~-----~~~--~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~------~I~~l~~ 1054 (1178)
||..+ +.....+ ... ...+..++++ ++..++...++.|.+||. +++.+..+..+.. .+.+++|
T Consensus 209 ~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~ 287 (333)
T 2dg1_A 209 IALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQF 287 (333)
T ss_dssp EEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEE
T ss_pred EEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEE
Confidence 99964 3332211 111 1367778885 446666667889999998 5666666654432 6899999
Q ss_pred ecCCCEEEEEeCCC
Q 001042 1055 SSSDRGIITGSSDG 1068 (1178)
Q Consensus 1055 spdg~~L~sgs~Dg 1068 (1178)
+++++.|+.++.++
T Consensus 288 ~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 288 IPGTNQLIICSNDI 301 (333)
T ss_dssp CTTSCEEEEEEECG
T ss_pred CCCCCEEEEEeCcc
Confidence 99988877666553
No 182
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.47 E-value=6.1e-12 Score=144.22 Aligned_cols=255 Identities=11% Similarity=0.070 Sum_probs=171.4
Q ss_pred cceEEEEecCCCCcccccc---------cc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeee
Q 001042 769 RSWVQSMFSREASSRSHSF---------SR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVT 837 (1178)
Q Consensus 769 ~~i~~~aFSpdg~~las~~---------~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~ 837 (1178)
..+...++ ||+.+|... .+ |.+||+++++ . +.+ ..+.+++||
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~-------------------~-~~l----~~~~~~~~S- 67 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNA-------------------R-RFI----ENATMPRIS- 67 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCC-------------------E-EEE----ESCEEEEEC-
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCc-------------------e-EEc----ccCCCeEEC-
Confidence 34556677 998887652 12 8889988765 1 222 457788887
Q ss_pred ccceeccccccCCCCEEEEEeCC---Cc--EEEEcCCCCCceeeEeecccccceE--EEecCCCEEEEEeCC--------
Q 001042 838 KREVWDLVGDREDAGFFISGSTD---CL--VKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKVVSGSDD-------- 902 (1178)
Q Consensus 838 ~~~~~~~~~~s~d~~~Lasgs~D---g~--I~iWd~~~~~~~~~~~l~~h~~~V~--~~s~d~~~l~sgs~d-------- 902 (1178)
|||+.||.++.+ +. |.+||+. +.+.......+. +. +|+|||+.|+.++.+
T Consensus 68 -----------pDg~~la~~~~~~~~~~~~l~~~~~~--~g~~~~l~~~~~--~~~~~wspdg~~l~~~~~~~~~~~~~~ 132 (347)
T 2gop_A 68 -----------PDGKKIAFMRANEEKKVSEIWVADLE--TLSSKKILEAKN--IRSLEWNEDSRKLLIVGFKRREDEDFI 132 (347)
T ss_dssp -----------TTSSEEEEEEEETTTTEEEEEEEETT--TTEEEEEEEESE--EEEEEECTTSSEEEEEEECCCC-----
T ss_pred -----------CCCCEEEEEEeccCCCcceEEEEECC--CCceEEEEcCCC--ccceeECCCCCEEEEEEccCCCcCCcE
Confidence 999999988754 33 7777765 344333333332 44 579999999888642
Q ss_pred -------------------CcEEEEECCCCcEEEEecCCCCceEEEEEeCCCeEEEEeCCC-------eEEEEeCCCCeE
Q 001042 903 -------------------QSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDG-------TVKMWDVRTDTC 956 (1178)
Q Consensus 903 -------------------g~I~iwd~~t~~~~~~l~~h~~~V~~l~~~~~~~l~sgs~dg-------~V~iwd~~~~~~ 956 (1178)
..|.+||+.+++.+..+.. . .+..+.|+++..++++..++ ...+|.+.+++.
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 210 (347)
T 2gop_A 133 FEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWEDGKE 210 (347)
T ss_dssp ----CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEETTEE
T ss_pred EEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCeEEEEEecccccccccccccEEEeCCCce
Confidence 5799999998887455554 3 78899999444666665442 334443335654
Q ss_pred EEEecCCCCCEEEEEEeCCCCEEEEEeCC--------CeEEEEECCCCceEEEEecCCccEEE-EEEcCCEEEEEeCCCc
Q 001042 957 VATVGRCSSAVLCMEYDDSTGILAAGGRD--------AVANIWDIRAGRQMHKFLGHTKWIRS-IRMDRDTVITGSDDWT 1027 (1178)
Q Consensus 957 ~~~~~~~~~~I~~l~~sp~~~~l~sgs~d--------g~I~lwD~~~~~~~~~~~~~~~~v~~-l~~~~~~l~sgs~dg~ 1027 (1178)
.... .+ ..+..+ +|+|+.++.++.+ ..|.+|| +++.......+...+.. +.|+...+++++.++.
T Consensus 211 ~~l~-~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~sdg~~~~~~~~~~ 284 (347)
T 2gop_A 211 EKMF-EK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKDGKVYFTLFEEGS 284 (347)
T ss_dssp EEEE-EE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEETTEEEEEEEETTE
T ss_pred EEec-cC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEcCcEEEEEecCCc
Confidence 3333 33 445544 9999998887744 4788888 55544444455667775 7886227888899999
Q ss_pred EEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcE-EEEECCCC
Q 001042 1028 ARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLL-RFWENDDG 1078 (1178)
Q Consensus 1028 I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I-~iwd~~~~ 1078 (1178)
+++| +.+++.. .+..+.+.|.+++|+| ..+++++.++.. .+|.++ +
T Consensus 285 ~~l~-~~~g~~~-~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g 331 (347)
T 2gop_A 285 VNLY-IWDGEIK-PIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-G 331 (347)
T ss_dssp EEEE-EESSSEE-EEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-S
T ss_pred EEEE-EcCCceE-EEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-C
Confidence 9999 8866554 3444577899999999 677777777765 788776 5
No 183
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.46 E-value=1.3e-10 Score=134.90 Aligned_cols=268 Identities=10% Similarity=-0.029 Sum_probs=183.4
Q ss_pred ecCCCEEEEEeC--CC---cEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEe----------CCCeEEEEeCCC
Q 001042 890 NSDRGKVVSGSD--DQ---SVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTAS----------HDGTVKMWDVRT 953 (1178)
Q Consensus 890 s~d~~~l~sgs~--dg---~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs----------~dg~V~iwd~~~ 953 (1178)
.++++++++... .+ +|.+||..+++.+..+.....+ .++++ +++.++++. .++.|.+||..+
T Consensus 29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t 106 (373)
T 2mad_H 29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT 106 (373)
T ss_pred CCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC
Confidence 367777666653 22 8899999999998888755444 88898 677777775 367899999999
Q ss_pred CeEEEEecCC-------CCCEEEEEEeCCCCEEEEEeC--CCeEEEEECCCCceEEE-EecCCccEEEEEEcCCEEEEEe
Q 001042 954 DTCVATVGRC-------SSAVLCMEYDDSTGILAAGGR--DAVANIWDIRAGRQMHK-FLGHTKWIRSIRMDRDTVITGS 1023 (1178)
Q Consensus 954 ~~~~~~~~~~-------~~~I~~l~~sp~~~~l~sgs~--dg~I~lwD~~~~~~~~~-~~~~~~~v~~l~~~~~~l~sgs 1023 (1178)
.+.+..+... ......++++|||++++++.. ++.|.++| .+++.+.. +.. ...+......+..+++.+
T Consensus 107 ~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~-~~~~~~~~~~~~~~~~~~ 184 (373)
T 2mad_H 107 FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS-PTCYHIHPGAPSTFYLLC 184 (373)
T ss_pred CcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC-CceEEEEeCCCceEEEEc
Confidence 8887776432 123458999999999998874 57899999 99988877 533 222322223445677788
Q ss_pred CCCcEEEEEcCCCeeeeEec-----cCCCc-EEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecc---------
Q 001042 1024 DDWTARMWSISRGTCDAVLA-----CHAGP-VQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTI--------- 1088 (1178)
Q Consensus 1024 ~dg~I~iwd~~~~~~~~~~~-----~h~~~-I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~--------- 1088 (1178)
.||.+.++|. +++...... ....+ .....+.+++..++..+.++.+.+.|+.++.......+..
T Consensus 185 ~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~ 263 (373)
T 2mad_H 185 AQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADT 263 (373)
T ss_pred CCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccc
Confidence 9999999999 877653321 11122 2334567776665555578899999997664333333221
Q ss_pred ---cCCcEEEEecCCCEEEEEeC----------CCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcC
Q 001042 1089 ---HSSAILSINAGDHWLGIGAA----------DNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDL 1155 (1178)
Q Consensus 1089 ---h~~~i~~is~dg~~Lasgs~----------Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafsp 1155 (1178)
.......++++++.+.++.. ++.|.++|..+. +.+.++. -.....+++|+|
T Consensus 264 ~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~---------------~vv~~i~-~g~~p~~i~~s~ 327 (373)
T 2mad_H 264 WRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG---------------QTSSQIS-LGHDVDAISVAQ 327 (373)
T ss_pred eecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC---------------EEEEEEE-CCCCcCeEEECC
Confidence 11123567888888777653 357999998744 2322221 112478899999
Q ss_pred CCC-EEEEEe-CCCcEEEEECCCCC
Q 001042 1156 ERK-RICSGG-RNGLLRLWEATINI 1178 (1178)
Q Consensus 1156 dg~-~Las~s-~Dg~V~IWdv~tg~ 1178 (1178)
||+ +++++. .++.|.+||+.+++
T Consensus 328 Dg~~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 328 DGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred CCCeEEEEEcCCCCeEEEEECCCCC
Confidence 999 777777 58999999999874
No 184
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.46 E-value=1.2e-11 Score=156.96 Aligned_cols=240 Identities=12% Similarity=0.074 Sum_probs=170.6
Q ss_pred ccccceEEEEeeeccceeccccccCCCCEEEEEeCCC-----cEEEEcCCCCCceeeE-eecccccceEEEecCCCEEEE
Q 001042 825 GHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDC-----LVKIWDPSLRGSELRA-TLKGHTRTVRAINSDRGKVVS 898 (1178)
Q Consensus 825 gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg-----~I~iWd~~~~~~~~~~-~l~~h~~~V~~~s~d~~~l~s 898 (1178)
+|+..+.+++|| |||++||.++.++ +|++||+. +++... .+......-.+|+|||+.|+.
T Consensus 122 ~~~~~~~~~~~S------------PDg~~la~~~~~~G~~~~~i~v~d~~--tg~~~~~~~~~~~~~~~~wspDg~~l~~ 187 (710)
T 2xdw_A 122 DGTVALRGYAFS------------EDGEYFAYGLSASGSDWVTIKFMKVD--GAKELPDVLERVKFSCMAWTHDGKGMFY 187 (710)
T ss_dssp TSCEEEEEEEEC------------TTSSEEEEEEEETTCSCEEEEEEETT--TTEEEEEEEEEECSCCEEECTTSSEEEE
T ss_pred CCCEEEEEEEEC------------CCCCEEEEEEcCCCCceEEEEEEECC--CCCCCcccccCcccceEEEEeCCCEEEE
Confidence 455568888887 9999999876643 89999987 333333 333222233578999999999
Q ss_pred EeCCCc----------------EEEEECCCCc----EEEEecCCCCceEEEEEe-CCCeEEEEeC-----CCeEEEEeCC
Q 001042 899 GSDDQS----------------VLVWDKQTSQ----LLEELKGHDAQVSCVRML-SGERVLTASH-----DGTVKMWDVR 952 (1178)
Q Consensus 899 gs~dg~----------------I~iwd~~t~~----~~~~l~~h~~~V~~l~~~-~~~~l~sgs~-----dg~V~iwd~~ 952 (1178)
++.++. |++|++.+++ .+.....|...+..+.|+ +++.++.++. +..|.+||+.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~ 267 (710)
T 2xdw_A 188 NAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQ 267 (710)
T ss_dssp EECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGG
T ss_pred EEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECc
Confidence 988766 9999998876 222333356668889999 6777776654 5789999997
Q ss_pred C------Ce-EEEEecCCCCCEEEEEEeCCCCEEEEEeCC----CeEEEEECCCCc--eEEEEecCCc--cEEEEEEc-C
Q 001042 953 T------DT-CVATVGRCSSAVLCMEYDDSTGILAAGGRD----AVANIWDIRAGR--QMHKFLGHTK--WIRSIRMD-R 1016 (1178)
Q Consensus 953 ~------~~-~~~~~~~~~~~I~~l~~sp~~~~l~sgs~d----g~I~lwD~~~~~--~~~~~~~~~~--~v~~l~~~-~ 1016 (1178)
+ +. ....+..+...+.. .|+++|+.++..+.. +.|.+||+.++. ....+..+.. .+..+++. +
T Consensus 268 ~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 346 (710)
T 2xdw_A 268 QESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRS 346 (710)
T ss_dssp GSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETT
T ss_pred ccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcC
Confidence 6 42 34445455555544 588899888776653 369999998874 2344545544 67788886 4
Q ss_pred C-EEEEEeCCCc--EEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEe----CCCcEEEEECCCCc
Q 001042 1017 D-TVITGSDDWT--ARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGS----SDGLLRFWENDDGG 1079 (1178)
Q Consensus 1017 ~-~l~sgs~dg~--I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs----~Dg~I~iwd~~~~~ 1079 (1178)
+ .+++...|+. |.+||+.+|+....+..+.+.+..+.++|+++.++... ..++|..||+.+++
T Consensus 347 ~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 347 NFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp TEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 4 6667777874 56677767887778887888899999999998766432 35789999999886
No 185
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.45 E-value=3.8e-12 Score=161.06 Aligned_cols=245 Identities=7% Similarity=-0.052 Sum_probs=167.2
Q ss_pred ccccceEEEEeeeccceeccccccCCCCEEE-----EEeCCCcEEEEcCCCCCcee-eEeecccccceEEEecCCCEEEE
Q 001042 825 GHAGAITALHCVTKREVWDLVGDREDAGFFI-----SGSTDCLVKIWDPSLRGSEL-RATLKGHTRTVRAINSDRGKVVS 898 (1178)
Q Consensus 825 gH~~~V~~l~fs~~~~~~~~~~~s~d~~~La-----sgs~Dg~I~iWd~~~~~~~~-~~~l~~h~~~V~~~s~d~~~l~s 898 (1178)
+|+..+.+++|| |||++|| +|+.+.+|++||+.... .. ...+......-.+|++||+.|+.
T Consensus 118 ~~~~~~~~~~~S------------PDG~~la~~~~~~G~~~~~i~v~dl~tg~-~~~~~~~~~~~~~~~~wspDg~~l~~ 184 (695)
T 2bkl_A 118 DGTVSLGTWAVS------------WDGKKVAFAQKPNAADEAVLHVIDVDSGE-WSKVDVIEGGKYATPKWTPDSKGFYY 184 (695)
T ss_dssp SSCEEEEEEEEC------------TTSSEEEEEEEETTCSCCEEEEEETTTCC-BCSSCCBSCCTTCCCEECTTSSEEEE
T ss_pred CCCEEEEEEEEC------------CCCCEEEEEECCCCCceEEEEEEECCCCC-CcCCcccCcccccceEEecCCCEEEE
Confidence 566678888887 9999999 44445789999987322 22 11222222134478999999999
Q ss_pred EeCCCc-------------EEEEECCCCc----EEEEecCCCCceEEEEEe-CCCeEEEEeCCC----eEEEEeCCCCeE
Q 001042 899 GSDDQS-------------VLVWDKQTSQ----LLEELKGHDAQVSCVRML-SGERVLTASHDG----TVKMWDVRTDTC 956 (1178)
Q Consensus 899 gs~dg~-------------I~iwd~~t~~----~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg----~V~iwd~~~~~~ 956 (1178)
++.|+. |++|++.+++ .+.....|...+..+.|+ ++..++.++.++ .|.+||..+++.
T Consensus 185 ~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~ 264 (695)
T 2bkl_A 185 EWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF 264 (695)
T ss_dssp EECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC
T ss_pred EEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce
Confidence 998776 9999999876 333444566788899999 777888777665 677777666654
Q ss_pred EEEecCCCCCEEEEEEeCCCCEEEEEe---CCCeEEEEECCCCce--EEEEecC--CccEEEEEEcCC-EEEEEeCCCcE
Q 001042 957 VATVGRCSSAVLCMEYDDSTGILAAGG---RDAVANIWDIRAGRQ--MHKFLGH--TKWIRSIRMDRD-TVITGSDDWTA 1028 (1178)
Q Consensus 957 ~~~~~~~~~~I~~l~~sp~~~~l~sgs---~dg~I~lwD~~~~~~--~~~~~~~--~~~v~~l~~~~~-~l~sgs~dg~I 1028 (1178)
.. +..+...+....+ ++|.+++.+. .++.|.+||+.+++. ...+..+ ...+..+++.++ .+++...|+..
T Consensus 265 ~~-l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~ 342 (695)
T 2bkl_A 265 RL-LVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATS 342 (695)
T ss_dssp EE-EEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEETTEE
T ss_pred EE-eecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEEECCEE
Confidence 33 3344445555556 5555444443 258999999988753 2333333 446777888655 67778889988
Q ss_pred EEEEcC-CCeeeeEeccC-CCcEEEEEEecCCCEEEEEe----CCCcEEEEECCCCceEEEE
Q 001042 1029 RMWSIS-RGTCDAVLACH-AGPVQCVEYSSSDRGIITGS----SDGLLRFWENDDGGIKCVK 1084 (1178)
Q Consensus 1029 ~iwd~~-~~~~~~~~~~h-~~~I~~l~~spdg~~L~sgs----~Dg~I~iwd~~~~~~~~~~ 1084 (1178)
++|.+. +++....+..+ .+.+..++++|+++.++... ..++|++||+.+++...+.
T Consensus 343 ~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l~ 404 (695)
T 2bkl_A 343 EVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELWA 404 (695)
T ss_dssp EEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEEE
T ss_pred EEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEe
Confidence 888665 45556666654 66788889999998776333 3478999999988644443
No 186
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.45 E-value=1.6e-11 Score=140.70 Aligned_cols=245 Identities=11% Similarity=0.124 Sum_probs=165.8
Q ss_pred CCCEEEEEe---------CCCcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEEeCC---C--cEEEEECCCCcE
Q 001042 850 DAGFFISGS---------TDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDD---Q--SVLVWDKQTSQL 915 (1178)
Q Consensus 850 d~~~Lasgs---------~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sgs~d---g--~I~iwd~~t~~~ 915 (1178)
||+.++... .++.|.+||+.. .+. ..+ ....-.+++|||+.|+.++.+ + .|.+||+.+++.
T Consensus 23 dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~--~~~-~~l--~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~ 97 (347)
T 2gop_A 23 KGELVAYVLTKANLKDNKYENTIVIENLKN--NAR-RFI--ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSS 97 (347)
T ss_dssp ETTEEEEEEEEEETTTTEEEEEEEEEETTT--CCE-EEE--ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEE
T ss_pred CCcEEEEEEeecCcccCCccceEEEEeCCC--Cce-EEc--ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCce
Confidence 466666542 256799999773 222 223 222234689999999987754 2 488889988876
Q ss_pred EEEecCCCCceEEEEEe-CCCeEEEEeC---------------------------CCeEEEEeCCCCeEEEEecCCCCCE
Q 001042 916 LEELKGHDAQVSCVRML-SGERVLTASH---------------------------DGTVKMWDVRTDTCVATVGRCSSAV 967 (1178)
Q Consensus 916 ~~~l~~h~~~V~~l~~~-~~~~l~sgs~---------------------------dg~V~iwd~~~~~~~~~~~~~~~~I 967 (1178)
......+ . +..+.|+ +++.|+.++. ...|.+||+.+++.+..+.. . .+
T Consensus 98 ~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~ 173 (347)
T 2gop_A 98 KKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RF 173 (347)
T ss_dssp EEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TT
T ss_pred EEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-Cc
Confidence 5554433 3 9999999 7777887763 25799999999887444444 3 78
Q ss_pred EEEEEeCCCCEEEEEeCCC---------eEEEEECCCCceEEEEecCCccEEEEEEcCCEEEEEeCC--------CcEEE
Q 001042 968 LCMEYDDSTGILAAGGRDA---------VANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDD--------WTARM 1030 (1178)
Q Consensus 968 ~~l~~sp~~~~l~sgs~dg---------~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~~l~sgs~d--------g~I~i 1030 (1178)
..++|+|+| +++++..++ .|.++| +++. ..+..+ ..+..++.+++.++.++.+ ..|.+
T Consensus 174 ~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~ 248 (347)
T 2gop_A 174 SSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKE-EKMFEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYI 248 (347)
T ss_dssp CEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEE-EEEEEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEE
T ss_pred ccccCCCCe-EEEEEecccccccccccccEEEeC--CCce-EEeccC-cceeeECCCCCEEEEEEccccCCccccceEEE
Confidence 899999999 777776542 455555 5543 344344 5566666678888777644 36888
Q ss_pred EEcCCCeeeeEeccCCCcEEE-EEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE--ecCCCEEEEEe
Q 001042 1031 WSISRGTCDAVLACHAGPVQC-VEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI--NAGDHWLGIGA 1107 (1178)
Q Consensus 1031 wd~~~~~~~~~~~~h~~~I~~-l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~dg~~Lasgs 1107 (1178)
|| +++.......+...+.. +.|+ ++ .+++++.++.+++| +.+++. . .+..+...+.++ ++ .++++++
T Consensus 249 ~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~--~-~~~~~~~~v~~~~~s~--~~~~~~~ 318 (347)
T 2gop_A 249 YD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEI--K-PIAKGRHWIMGFDVDE--IVVYLKE 318 (347)
T ss_dssp EC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSE--E-EEECSSSEEEEEEESS--SEEEEEE
T ss_pred EC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCce--E-EEecCCCeEEeeeeeC--cEEEEEc
Confidence 88 56554445556778886 8999 88 88999999999999 886532 2 223345666655 45 6777777
Q ss_pred CCCcE-EEEEcC
Q 001042 1108 ADNSM-SLFHRP 1118 (1178)
Q Consensus 1108 ~Dg~I-~iwd~~ 1118 (1178)
.++.. .+|.+.
T Consensus 319 ~~~~~~~l~~~~ 330 (347)
T 2gop_A 319 TATRLRELFTWD 330 (347)
T ss_dssp CSSSCCEEEEES
T ss_pred CCCChHHheEeC
Confidence 77665 778764
No 187
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.44 E-value=1.8e-11 Score=139.56 Aligned_cols=260 Identities=10% Similarity=0.016 Sum_probs=175.0
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCE
Q 001042 889 INSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAV 967 (1178)
Q Consensus 889 ~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I 967 (1178)
+++++..++..+.++.++.| .++....+..+...+.+++|+ ++..++++..++.|.+||..+++.......+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~ 89 (333)
T 2dg1_A 13 YSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANP 89 (333)
T ss_dssp SCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSE
T ss_pred ecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCc
Confidence 45555556666778888888 456666777777888999998 55655677889999999999887665544556789
Q ss_pred EEEEEeCCCCEEEEEeCC----CeEEEEECCCCceEEEEe--cCCccEEEEEEcCC--EEEEEeC------CCcEEEEEc
Q 001042 968 LCMEYDDSTGILAAGGRD----AVANIWDIRAGRQMHKFL--GHTKWIRSIRMDRD--TVITGSD------DWTARMWSI 1033 (1178)
Q Consensus 968 ~~l~~sp~~~~l~sgs~d----g~I~lwD~~~~~~~~~~~--~~~~~v~~l~~~~~--~l~sgs~------dg~I~iwd~ 1033 (1178)
.+++++++|++++++..+ +.|.+||..+++....+. .....+.+++++++ .+++... .+.|..||.
T Consensus 90 ~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~ 169 (333)
T 2dg1_A 90 AAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSP 169 (333)
T ss_dssp EEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECT
T ss_pred ceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeC
Confidence 999999999988777666 689999998877653332 23457888998644 4444432 355666666
Q ss_pred CCCeeeeEeccCCCcEEEEEEecCCCEEE-EEeCCCcEEEEECCC-Cc-eEEE-----EEecccCCcE--EEEecCCCEE
Q 001042 1034 SRGTCDAVLACHAGPVQCVEYSSSDRGII-TGSSDGLLRFWENDD-GG-IKCV-----KNVTIHSSAI--LSINAGDHWL 1103 (1178)
Q Consensus 1034 ~~~~~~~~~~~h~~~I~~l~~spdg~~L~-sgs~Dg~I~iwd~~~-~~-~~~~-----~~~~~h~~~i--~~is~dg~~L 1103 (1178)
.+++... +..+...+.+++|+|+|+.++ +.+.++.|.+||..+ +. .... ....++ ..+ .+++++|++.
T Consensus 170 ~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~ 247 (333)
T 2dg1_A 170 DFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLY 247 (333)
T ss_dssp TSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEE
T ss_pred CCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEE
Confidence 5544433 323344678999999998665 445678999999964 32 1111 111222 223 4557889988
Q ss_pred EEEeCCCcEEEEEcCCCccccccCCCCCccceeEeecc---CCCcccEEEEEEcCCCCEEEEEeCC
Q 001042 1104 GIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTP---QKTVAVVRCIASDLERKRICSGGRN 1166 (1178)
Q Consensus 1104 asgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~---~~h~~~V~~lafspdg~~Las~s~D 1166 (1178)
++...++.|.+||..... + ..+... .+|...+.+++|+||++.|+.++.+
T Consensus 248 v~~~~~~~v~~~d~~g~~----------~---~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 248 VAMYGQGRVLVFNKRGYP----------I---GQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEEETTTEEEEECTTSCE----------E---EEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred EEEcCCCEEEEECCCCCE----------E---EEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 888788999999974221 1 111111 1233368899999998877766555
No 188
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.40 E-value=1.5e-09 Score=120.87 Aligned_cols=271 Identities=11% Similarity=0.020 Sum_probs=181.7
Q ss_pred cceEE--EecCCCEEEEEeCCCcEEEEECCCCcEEEE-ecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEE-E
Q 001042 884 RTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLLEE-LKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCV-A 958 (1178)
Q Consensus 884 ~~V~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~-l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~-~ 958 (1178)
..+.+ +.++|+..++...++.|.+||.. ++.... ...+...+.++++. ++..+++...++.|..||.. ++.. .
T Consensus 15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~ 92 (299)
T 2z2n_A 15 TGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEY 92 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred CCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEE
Confidence 34454 46788877776668899999988 654432 23355778999998 45555555558899999986 4332 2
Q ss_pred EecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEE-EecCCccEEEEEEcCC--EEEEEeCCCcEEEEEcCC
Q 001042 959 TVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHK-FLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISR 1035 (1178)
Q Consensus 959 ~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~-~~~~~~~v~~l~~~~~--~l~sgs~dg~I~iwd~~~ 1035 (1178)
........+.+++++++|+.+++...++.|..||. +++.... .......+..++++++ ..++...++.|..||. +
T Consensus 93 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~ 170 (299)
T 2z2n_A 93 TLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-S 170 (299)
T ss_dssp ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-T
T ss_pred eCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-C
Confidence 22234567899999999988877777889999998 5554332 2234457888888643 5555556789999998 6
Q ss_pred CeeeeE-eccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE--ecCCCEEEEEeCCCcE
Q 001042 1036 GTCDAV-LACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSM 1112 (1178)
Q Consensus 1036 ~~~~~~-~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~dg~~Lasgs~Dg~I 1112 (1178)
++.... ...+...+.+++++++|+..++...++.|..||. ++.... .....+...+.++ +++|++.++...++.|
T Consensus 171 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i 248 (299)
T 2z2n_A 171 GDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKIPTPNARPHAITAGAGIDLWFTEWGANKI 248 (299)
T ss_dssp CCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECSTTCEEEEETTTTEE
T ss_pred CcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EECCCCCCCceeEEECCCCCEEEeccCCceE
Confidence 655432 3334556889999999997777667889999999 664332 2233344455554 6788876666678899
Q ss_pred EEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001042 1113 SLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATIN 1177 (1178)
Q Consensus 1113 ~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~tg 1177 (1178)
..||.. ++. ... ....+...+.++++ ++|++.++.+ .+.+..++..++
T Consensus 249 ~~~d~~-g~~-------------~~~-~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 249 GRLTSN-NII-------------EEY-PIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp EEEETT-TEE-------------EEE-ECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred EEECCC-Cce-------------EEE-eCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 999973 211 111 12234456899999 9998777665 566777777654
No 189
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.40 E-value=1.7e-10 Score=132.32 Aligned_cols=268 Identities=12% Similarity=0.049 Sum_probs=189.0
Q ss_pred ecCCCEEEEEeC-----CCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEe----------CCCeEEEEeCCC
Q 001042 890 NSDRGKVVSGSD-----DQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTAS----------HDGTVKMWDVRT 953 (1178)
Q Consensus 890 s~d~~~l~sgs~-----dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs----------~dg~V~iwd~~~ 953 (1178)
.|+++.+++... ++.|.+.|..+++.+..+.....+ . +.++ +++.+++++ .++.|.+||..+
T Consensus 41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t 118 (386)
T 3sjl_D 41 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT 118 (386)
T ss_dssp CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred CCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCC
Confidence 689998888865 679999999999999998865555 4 8888 677777665 367899999999
Q ss_pred CeEEEEecCCC-------CCEEEEEEeCCCCEEEEEeC--CCeEEEEECCCCceEEEEecCCccEEEEEE-cCCEEEEEe
Q 001042 954 DTCVATVGRCS-------SAVLCMEYDDSTGILAAGGR--DAVANIWDIRAGRQMHKFLGHTKWIRSIRM-DRDTVITGS 1023 (1178)
Q Consensus 954 ~~~~~~~~~~~-------~~I~~l~~sp~~~~l~sgs~--dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~-~~~~l~sgs 1023 (1178)
++.+..+.... .....++++|||++++++.. ++.|.++|+.+++.+.++..... ..+.. ..+.+++.+
T Consensus 119 ~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~~~~~ 196 (386)
T 3sjl_D 119 LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTFFMHC 196 (386)
T ss_dssp CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEE
T ss_pred CeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc--ceeecCCCceeEEEC
Confidence 99888774321 24567999999999998864 68999999999999988854321 12222 456788889
Q ss_pred CCCcEEEEEcCC-CeeeeEeccC----CCcEE-EEEEe-cCCCEEEEEeCCCcEEEEECCCCceEEEEEec---------
Q 001042 1024 DDWTARMWSISR-GTCDAVLACH----AGPVQ-CVEYS-SSDRGIITGSSDGLLRFWENDDGGIKCVKNVT--------- 1087 (1178)
Q Consensus 1024 ~dg~I~iwd~~~-~~~~~~~~~h----~~~I~-~l~~s-pdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~--------- 1087 (1178)
.||++.+.++.+ ++.......+ ..++. ...|. ++|++++ .+.+|.|.+.|..++.......+.
T Consensus 197 ~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~ 275 (386)
T 3sjl_D 197 RDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERAD 275 (386)
T ss_dssp TTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHT
T ss_pred CCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccc
Confidence 999999999976 5543222111 12221 24665 6776555 556899999999876433333332
Q ss_pred ---ccCCcEEEEecCCCEEEEEeC----------CCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEc
Q 001042 1088 ---IHSSAILSINAGDHWLGIGAA----------DNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASD 1154 (1178)
Q Consensus 1088 ---~h~~~i~~is~dg~~Lasgs~----------Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafs 1154 (1178)
.......+++++++.+.+... .+.|.+.|+.+.+ .+..+.+ + ..+.+++++
T Consensus 276 g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k---------v~~~i~v-----g--~~~~~lavs 339 (386)
T 3sjl_D 276 GWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE---------RLAKFEM-----G--HEIDSINVS 339 (386)
T ss_dssp TEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC---------EEEEEEE-----E--EEECEEEEC
T ss_pred cccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCe---------EEEEEEC-----C--CCcceEEEC
Confidence 122345677899988887643 2568888987442 2222211 2 257899999
Q ss_pred CCCC-EEEEE-eCCCcEEEEECCCCC
Q 001042 1155 LERK-RICSG-GRNGLLRLWEATINI 1178 (1178)
Q Consensus 1155 pdg~-~Las~-s~Dg~V~IWdv~tg~ 1178 (1178)
+|++ +|+++ ..++.|.++|..+++
T Consensus 340 ~D~~~~ly~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 340 QDEKPLLYALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp SSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred CCCCeEEEEEcCCCCeEEEEECCCCc
Confidence 9997 66665 458999999999875
No 190
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.39 E-value=6.3e-11 Score=132.72 Aligned_cols=240 Identities=7% Similarity=-0.027 Sum_probs=164.2
Q ss_pred CcEEEEecCCCCceEEEEEe-CCC-eEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 001042 913 SQLLEELKGHDAQVSCVRML-SGE-RVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANI 990 (1178)
Q Consensus 913 ~~~~~~l~~h~~~V~~l~~~-~~~-~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~l 990 (1178)
+..+..+..+.....+++|+ +++ .++++..++.|..||..++ ...+..+...+.+++++++|+++++...++.|.+
T Consensus 17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~ 94 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLER 94 (296)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEE
T ss_pred CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEE
Confidence 33445555666778899999 565 6778888999999999887 5566667788999999999998877777789999
Q ss_pred EECCCCceEEEEecC----CccEEEEEEcC--CEEEE----Ee-------------CCCcEEEEEcCCCeeeeEeccCCC
Q 001042 991 WDIRAGRQMHKFLGH----TKWIRSIRMDR--DTVIT----GS-------------DDWTARMWSISRGTCDAVLACHAG 1047 (1178)
Q Consensus 991 wD~~~~~~~~~~~~~----~~~v~~l~~~~--~~l~s----gs-------------~dg~I~iwd~~~~~~~~~~~~h~~ 1047 (1178)
||..+++........ ...+..+++++ +.+++ |+ ..+.|..++.. ++ ...+..+..
T Consensus 95 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~ 172 (296)
T 3e5z_A 95 QREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRV 172 (296)
T ss_dssp ECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCS
T ss_pred EcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCC
Confidence 999888754433221 12455677754 45665 22 13456566544 44 344455666
Q ss_pred cEEEEEEecCCCEEEEEeCCCcEEEEECC-CCce-EEEEEecccCCc--EEEEecCCCEEEEEeCCCcEEEEEcCCCccc
Q 001042 1048 PVQCVEYSSSDRGIITGSSDGLLRFWEND-DGGI-KCVKNVTIHSSA--ILSINAGDHWLGIGAADNSMSLFHRPQERLG 1123 (1178)
Q Consensus 1048 ~I~~l~~spdg~~L~sgs~Dg~I~iwd~~-~~~~-~~~~~~~~h~~~--i~~is~dg~~Lasgs~Dg~I~iwd~~~~~~~ 1123 (1178)
....++|+|+|+.+++.+.++.|.+|++. ++.. .....+..+... -.+++++|++.++. ++.|.+||...
T Consensus 173 ~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~g---- 246 (296)
T 3e5z_A 173 KPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPDG---- 246 (296)
T ss_dssp SEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTTS----
T ss_pred CCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCCC----
Confidence 78999999999999777788999999997 5543 222222222222 35668899876665 78999999752
Q ss_pred cccCCCCCccceeEeeccCCCcccEEEEEE-cCCCCEEEEEeCCCcEEEEECCC
Q 001042 1124 GFSGTGSKMSGWQLYRTPQKTVAVVRCIAS-DLERKRICSGGRNGLLRLWEATI 1176 (1178)
Q Consensus 1124 ~~~~~g~~~~~~~~~~~~~~h~~~V~~laf-spdg~~Las~s~Dg~V~IWdv~t 1176 (1178)
+.......+.. +++++| +||++.|++++.+| +.-++..+
T Consensus 247 ------------~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~ 286 (296)
T 3e5z_A 247 ------------DELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNV 286 (296)
T ss_dssp ------------CEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSC
T ss_pred ------------CEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEccc
Confidence 22333334445 889999 68999999888764 33334443
No 191
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.39 E-value=1.1e-10 Score=147.90 Aligned_cols=231 Identities=11% Similarity=0.065 Sum_probs=162.8
Q ss_pred EEecCCCEEEEEeCCC-----cEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCe----------------
Q 001042 888 AINSDRGKVVSGSDDQ-----SVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGT---------------- 945 (1178)
Q Consensus 888 ~~s~d~~~l~sgs~dg-----~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~---------------- 945 (1178)
++||||++|+.++.++ +|++||+.+++.......+ ..+..++|+ +++.|+.++.++.
T Consensus 131 ~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 209 (710)
T 2xdw_A 131 AFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQK 209 (710)
T ss_dssp EECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCE
T ss_pred EECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccccCCCCE
Confidence 5799999998776543 8999999999876633222 236779999 7888998887765
Q ss_pred EEEEeCCCCeE----EEEecCCCCCEEEEEEeCCCCEEEEEeC-----CCeEEEEECCC------Cc-eEEEEecCCccE
Q 001042 946 VKMWDVRTDTC----VATVGRCSSAVLCMEYDDSTGILAAGGR-----DAVANIWDIRA------GR-QMHKFLGHTKWI 1009 (1178)
Q Consensus 946 V~iwd~~~~~~----~~~~~~~~~~I~~l~~sp~~~~l~sgs~-----dg~I~lwD~~~------~~-~~~~~~~~~~~v 1009 (1178)
|++|++.+++. +.....+...+..+.|+|||++|+.++. +..|++||+.+ +. ....+..+...+
T Consensus 210 v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~ 289 (710)
T 2xdw_A 210 LYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGE 289 (710)
T ss_dssp EEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSC
T ss_pred EEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcE
Confidence 99999988752 2222224556889999999999988764 57899999987 43 355555555544
Q ss_pred EE-EEEcCCEEEEEeCC----CcEEEEEcCCCe--eeeEeccCCC--cEEEEEEecCCCEEEEEeCCCc--EEEEECCCC
Q 001042 1010 RS-IRMDRDTVITGSDD----WTARMWSISRGT--CDAVLACHAG--PVQCVEYSSSDRGIITGSSDGL--LRFWENDDG 1078 (1178)
Q Consensus 1010 ~~-l~~~~~~l~sgs~d----g~I~iwd~~~~~--~~~~~~~h~~--~I~~l~~spdg~~L~sgs~Dg~--I~iwd~~~~ 1078 (1178)
.. +..+++.++..+.+ +.|.+||+.++. ....+..|.. .+..++|++++.++++...|+. |.+|++.+|
T Consensus 290 ~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g 369 (710)
T 2xdw_A 290 YDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATG 369 (710)
T ss_dssp EEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTC
T ss_pred EEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCC
Confidence 43 44467776665543 369999998764 2344544544 6888999988888888888885 566677666
Q ss_pred ceEEEEEecccCCcEEEE--ecCCCEEEEE-e---CCCcEEEEEcCCCc
Q 001042 1079 GIKCVKNVTIHSSAILSI--NAGDHWLGIG-A---ADNSMSLFHRPQER 1121 (1178)
Q Consensus 1079 ~~~~~~~~~~h~~~i~~i--s~dg~~Lasg-s---~Dg~I~iwd~~~~~ 1121 (1178)
.....+..+...+..+ ++++..++.. + ..++|.+||+.+++
T Consensus 370 --~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 370 --ALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp --CEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred --CEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 3445566666666665 5788766643 2 34789999997654
No 192
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.38 E-value=2.2e-09 Score=119.59 Aligned_cols=276 Identities=8% Similarity=-0.021 Sum_probs=183.0
Q ss_pred ecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEE--EecCCCEEEEEe
Q 001042 823 IRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGS 900 (1178)
Q Consensus 823 l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~--~s~d~~~l~sgs 900 (1178)
+..+...+.++++. ++|++.++...++.|..||.. . .........+...+.+ +.++|...++..
T Consensus 10 ~~~~~~~~~~i~~d------------~~g~l~v~~~~~~~v~~~d~~-~-~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~ 75 (299)
T 2z2n_A 10 LTNQDTGPYGITVS------------DKGKVWITQHKANMISCINLD-G-KITEYPLPTPDAKVMCLTISSDGEVWFTEN 75 (299)
T ss_dssp CCSSSCCEEEEEEC------------TTSCEEEEETTTTEEEEECTT-C-CEEEEECSSTTCCEEEEEECTTSCEEEEET
T ss_pred CCCcCCCccceEEC------------CCCCEEEEecCCCcEEEEcCC-C-CeEEecCCcccCceeeEEECCCCCEEEeCC
Confidence 44555678888886 889888877778899999966 2 2221222223344554 468888877777
Q ss_pred CCCcEEEEECCCCcEE-EEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEE-ecCCCCCEEEEEEeCCCC
Q 001042 901 DDQSVLVWDKQTSQLL-EELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVAT-VGRCSSAVLCMEYDDSTG 977 (1178)
Q Consensus 901 ~dg~I~iwd~~t~~~~-~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~-~~~~~~~I~~l~~sp~~~ 977 (1178)
.++.|..||.. ++.. ..+......+.++++. ++..+++...++.|..||. +++.... .......+.+++++++|+
T Consensus 76 ~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~ 153 (299)
T 2z2n_A 76 AANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNA 153 (299)
T ss_dssp TTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSC
T ss_pred CCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCC
Confidence 78899999986 4432 2222345678899988 4555555556889999998 5554433 233456789999999998
Q ss_pred EEEEEeCCCeEEEEECCCCceEEE-EecCCccEEEEEEcC--CEEEEEeCCCcEEEEEcCCCeeeeE-eccCCCcEEEEE
Q 001042 978 ILAAGGRDAVANIWDIRAGRQMHK-FLGHTKWIRSIRMDR--DTVITGSDDWTARMWSISRGTCDAV-LACHAGPVQCVE 1053 (1178)
Q Consensus 978 ~l~sgs~dg~I~lwD~~~~~~~~~-~~~~~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~-~~~h~~~I~~l~ 1053 (1178)
..++...++.|..||. +++.... .......+.++++++ +..++...++.|..||. +++.... ...+...+.+++
T Consensus 154 l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~ 231 (299)
T 2z2n_A 154 LWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAIT 231 (299)
T ss_dssp EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEE
T ss_pred EEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEE
Confidence 8777767789999998 6655432 233445688888864 45555556789999998 6654332 233456789999
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEEe-cCCCEEEEEeCCCcEEEEEcCC
Q 001042 1054 YSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSIN-AGDHWLGIGAADNSMSLFHRPQ 1119 (1178)
Q Consensus 1054 ~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is-~dg~~Lasgs~Dg~I~iwd~~~ 1119 (1178)
++++|+..++...++.|..||. ++... ......+...+.++. ++|.+.++.+ .+.+..++..+
T Consensus 232 ~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~~~~~~~~~~~~i~~~~g~l~v~~~-~~~l~~~~~~~ 295 (299)
T 2z2n_A 232 AGAGIDLWFTEWGANKIGRLTS-NNIIE-EYPIQIKSAEPHGICFDGETIWFAME-CDKIGKLTLIK 295 (299)
T ss_dssp ECSTTCEEEEETTTTEEEEEET-TTEEE-EEECSSSSCCEEEEEECSSCEEEEET-TTEEEEEEEC-
T ss_pred ECCCCCEEEeccCCceEEEECC-CCceE-EEeCCCCCCccceEEecCCCEEEEec-CCcEEEEEcCc
Confidence 9999986666657889999998 45322 222333334444432 6666655544 57777778764
No 193
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.37 E-value=7.8e-11 Score=130.76 Aligned_cols=213 Identities=8% Similarity=0.013 Sum_probs=159.4
Q ss_pred CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCC-CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCC-ccEE
Q 001042 933 SGERVLTASHDGTVKMWDVRTDTCVATVGRCS-SAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHT-KWIR 1010 (1178)
Q Consensus 933 ~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~-~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~-~~v~ 1010 (1178)
+++.+++++.|+.|.+||.++|+.+..+..+. ..+.+++++|+|++++ +.++.|..||. +++.+.++..+. ..+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~ 80 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ 80 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence 67889999999999999999999999987765 4788999999999888 45788999999 899999887653 4677
Q ss_pred EEEE--cCCEEEEEeC-CCcEEEEEcCCCeeeeEecc------CCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceE
Q 001042 1011 SIRM--DRDTVITGSD-DWTARMWSISRGTCDAVLAC------HAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIK 1081 (1178)
Q Consensus 1011 ~l~~--~~~~l~sgs~-dg~I~iwd~~~~~~~~~~~~------h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~ 1081 (1178)
++.+ +++.+++.+. ++.+..+|. +|+.+..+.. +......++..++|+++++.+.++.|..||.+ |+
T Consensus 81 ~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~-- 156 (276)
T 3no2_A 81 TARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQ-- 156 (276)
T ss_dssp EEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SC--
T ss_pred ccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CC--
Confidence 7776 5678888777 788888885 7777766542 22245567789999999999999999999988 74
Q ss_pred EEEEecccCC-cEEEEecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeec-cC-CCcccEEEEEEcCCCC
Q 001042 1082 CVKNVTIHSS-AILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRT-PQ-KTVAVVRCIASDLERK 1158 (1178)
Q Consensus 1082 ~~~~~~~h~~-~i~~is~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~-~~-~h~~~V~~lafspdg~ 1158 (1178)
.+..+..+.. .-....++|+.+++++.++.|..+|..+++ . .|+.... .. .....+..++..++|+
T Consensus 157 ~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~---------~--~w~~~~~~~~~~~l~~~~~~~~~~~G~ 225 (276)
T 3no2_A 157 LLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNR---------I--VRRVNANDIEGVQLFFVAQLFPLQNGG 225 (276)
T ss_dssp EEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCC---------E--EEEEEGGGSBSCCCSEEEEEEECTTSC
T ss_pred EEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCc---------E--EEEecCCCCCCccccccccceEcCCCC
Confidence 4444443322 223446899999999888899999987432 2 2333211 11 1234478888889998
Q ss_pred EEEEE
Q 001042 1159 RICSG 1163 (1178)
Q Consensus 1159 ~Las~ 1163 (1178)
++++.
T Consensus 226 i~v~~ 230 (276)
T 3no2_A 226 LYICN 230 (276)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 88876
No 194
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.37 E-value=5.5e-10 Score=129.78 Aligned_cols=297 Identities=11% Similarity=0.053 Sum_probs=192.3
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCceeeEeeccc-------ccceE-EEecCCCEEEEEeCCCcEEEEECCCCcEEEEecCC
Q 001042 851 AGFFISGSTDCLVKIWDPSLRGSELRATLKGH-------TRTVR-AINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGH 922 (1178)
Q Consensus 851 ~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h-------~~~V~-~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h 922 (1178)
+..+++++.++.|..+|............... ...+. ....++..+++++.++.|..+|..+|+.+......
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~ 132 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVA 132 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCC
Confidence 66777888889999999763322222222211 12222 34456778899999999999999999998877654
Q ss_pred CCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCE-----EEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Q 001042 923 DAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAV-----LCMEYDDSTGILAAGGRDAVANIWDIRAGR 997 (1178)
Q Consensus 923 ~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I-----~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~ 997 (1178)
......... .++.+++++.+|.|..+|..+|+.+.......... ...... +..+++++.+|.+..+|..+++
T Consensus 133 ~~~~~~p~~-~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~ 209 (376)
T 3q7m_A 133 GEALSRPVV-SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQ 209 (376)
T ss_dssp SCCCSCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCC
T ss_pred CceEcCCEE-ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCc
Confidence 332222222 35688889999999999999999887765432211 112222 4567888889999999999999
Q ss_pred eEEEEecCCcc----------E-EEEEEcCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeC
Q 001042 998 QMHKFLGHTKW----------I-RSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSS 1066 (1178)
Q Consensus 998 ~~~~~~~~~~~----------v-~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~ 1066 (1178)
.+......... + ......++.++.++.++.+..+|..+|+.+..... .....+... +..++.++.
T Consensus 210 ~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~~--~~~l~~~~~ 285 (376)
T 3q7m_A 210 MIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIVD--GNRIYLVDQ 285 (376)
T ss_dssp EEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEEE--TTEEEEEET
T ss_pred EEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceEE--CCEEEEEcC
Confidence 88776532110 1 12223567888889999999999999988766542 334444443 667888888
Q ss_pred CCcEEEEECCCCceEEEEEec-ccCCcEEEEecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCc
Q 001042 1067 DGLLRFWENDDGGIKCVKNVT-IHSSAILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTV 1145 (1178)
Q Consensus 1067 Dg~I~iwd~~~~~~~~~~~~~-~h~~~i~~is~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~ 1145 (1178)
+|.+..+|..+++.. .... ............+..|++++.+|.+..+|..+++. + |+.. ...
T Consensus 286 ~g~l~~~d~~tG~~~--w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~~---------~--~~~~----~~~ 348 (376)
T 3q7m_A 286 NDRVMALTIDGGVTL--WTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRF---------V--AQQK----VDS 348 (376)
T ss_dssp TCCEEEEETTTCCEE--EEECTTTTSCCCCCEEETTEEEEECTTSEEEEEETTTCCE---------E--EEEE----CCT
T ss_pred CCeEEEEECCCCcEE--EeecccCCCcccCCEEECCEEEEEeCCCeEEEEECCCCcE---------E--EEEe----cCC
Confidence 999999999999533 3332 11111212222467888899999999999885432 1 1111 101
Q ss_pred ccEE-EEEEcCCCCEEEEEeCCCcEEEEE
Q 001042 1146 AVVR-CIASDLERKRICSGGRNGLLRLWE 1173 (1178)
Q Consensus 1146 ~~V~-~lafspdg~~Las~s~Dg~V~IWd 1173 (1178)
..+. .... .+..|+.++.||.|..|+
T Consensus 349 ~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 349 SGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp TCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred CcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 1111 1111 255788899999999987
No 195
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.37 E-value=1.8e-11 Score=154.74 Aligned_cols=266 Identities=9% Similarity=-0.035 Sum_probs=173.6
Q ss_pred CCCCEEEEEeCCC---cEEEEcCCCCCceeeEeec------ccccceE--EEecCCCEEEE-----EeCCCcEEEEECCC
Q 001042 849 EDAGFFISGSTDC---LVKIWDPSLRGSELRATLK------GHTRTVR--AINSDRGKVVS-----GSDDQSVLVWDKQT 912 (1178)
Q Consensus 849 ~d~~~Lasgs~Dg---~I~iWd~~~~~~~~~~~l~------~h~~~V~--~~s~d~~~l~s-----gs~dg~I~iwd~~t 912 (1178)
++|++++....++ .-.+|-....+......+. +|...+. ++||||++|+. |+.+.+|++||+.+
T Consensus 77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t 156 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS 156 (695)
T ss_dssp EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC
Confidence 7888888776654 3445543322333222222 3443444 57999999983 44457899999999
Q ss_pred CcEEEEecCCCCce--EEEEEe-CCCeEEEEeCCCe-------------EEEEeCCCCe----EEEEecCCCCCEEEEEE
Q 001042 913 SQLLEELKGHDAQV--SCVRML-SGERVLTASHDGT-------------VKMWDVRTDT----CVATVGRCSSAVLCMEY 972 (1178)
Q Consensus 913 ~~~~~~l~~h~~~V--~~l~~~-~~~~l~sgs~dg~-------------V~iwd~~~~~----~~~~~~~~~~~I~~l~~ 972 (1178)
++.+. ..+...+ ..++|+ ++..|+.++.|.. |++|++.++. .+.....+...+.++.|
T Consensus 157 g~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~ 234 (695)
T 2bkl_A 157 GEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDL 234 (695)
T ss_dssp CCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEE
T ss_pred CCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEE
Confidence 98641 1122222 678999 7788998888776 9999998876 33333334567899999
Q ss_pred eCCCCEEEEEeCCC----eEEEEECCCCceEEEEecCCccEEEEEE-cCCEEEEEeC----CCcEEEEEcCCCee---ee
Q 001042 973 DDSTGILAAGGRDA----VANIWDIRAGRQMHKFLGHTKWIRSIRM-DRDTVITGSD----DWTARMWSISRGTC---DA 1040 (1178)
Q Consensus 973 sp~~~~l~sgs~dg----~I~lwD~~~~~~~~~~~~~~~~v~~l~~-~~~~l~sgs~----dg~I~iwd~~~~~~---~~ 1040 (1178)
+|||++|+.++.++ .|++||..+++. ..+..+...+....+ +++ ++..+. ++.|.+||+.++.. ..
T Consensus 235 SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~ 312 (695)
T 2bkl_A 235 SRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGVGAKYEVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKE 312 (695)
T ss_dssp CTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECSSCCEEEEEETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEE
T ss_pred CCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCCCceEEEEecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeE
Confidence 99999998887666 777887655543 344444444444444 555 544443 57899999987653 33
Q ss_pred EeccC-CCcEEEEEEecCCCEEEEEeCCCcEEEEECC-CCceEEEEEeccc-CCcEEEE--ecCCCEEEEEe----CCCc
Q 001042 1041 VLACH-AGPVQCVEYSSSDRGIITGSSDGLLRFWEND-DGGIKCVKNVTIH-SSAILSI--NAGDHWLGIGA----ADNS 1111 (1178)
Q Consensus 1041 ~~~~h-~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~-~~~~~~~~~~~~h-~~~i~~i--s~dg~~Lasgs----~Dg~ 1111 (1178)
.+..+ ...+..++++ ++.++++...|+..++|.++ ++ .....+..+ ...+..+ +++++.++... ..++
T Consensus 313 l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g--~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~ 389 (695)
T 2bkl_A 313 IVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKG--KPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQ 389 (695)
T ss_dssp EECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC--CEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEE
T ss_pred EecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC--CeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCE
Confidence 33333 4568888998 67788888899998888665 34 234445444 4445444 67887776433 3478
Q ss_pred EEEEEcCCCc
Q 001042 1112 MSLFHRPQER 1121 (1178)
Q Consensus 1112 I~iwd~~~~~ 1121 (1178)
|++||+.+++
T Consensus 390 v~~~d~~~g~ 399 (695)
T 2bkl_A 390 IYKTSVSTGK 399 (695)
T ss_dssp EEEEETTTCC
T ss_pred EEEEECCCCc
Confidence 9999997654
No 196
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.36 E-value=1.9e-10 Score=131.10 Aligned_cols=252 Identities=8% Similarity=0.029 Sum_probs=170.6
Q ss_pred CCCcEEEEcCCCCCceeeEeec----c--cccceEEEecCCCEE-EEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEE
Q 001042 859 TDCLVKIWDPSLRGSELRATLK----G--HTRTVRAINSDRGKV-VSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRM 931 (1178)
Q Consensus 859 ~Dg~I~iWd~~~~~~~~~~~l~----~--h~~~V~~~s~d~~~l-~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~ 931 (1178)
.+++|.+||.. ..+....+. + .......+..++..+ ++...++.|.+||..+++.+.++. .......+++
T Consensus 15 ~~~~l~~~d~~--t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~ 91 (328)
T 3dsm_A 15 SNATLSYYDPA--TCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHF 91 (328)
T ss_dssp CCBEEEEEETT--TTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEE
T ss_pred CCceEEEEECC--CCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEE
Confidence 48899999976 333333221 1 112233444444544 455567999999999999988885 4567889999
Q ss_pred eCCCeEEEEe-CCCeEEEEeCCCCeEEEEecCCC-----CCEEEEEEeCCCCEEEEEe--CCCeEEEEECCCCceEEEEe
Q 001042 932 LSGERVLTAS-HDGTVKMWDVRTDTCVATVGRCS-----SAVLCMEYDDSTGILAAGG--RDAVANIWDIRAGRQMHKFL 1003 (1178)
Q Consensus 932 ~~~~~l~sgs-~dg~V~iwd~~~~~~~~~~~~~~-----~~I~~l~~sp~~~~l~sgs--~dg~I~lwD~~~~~~~~~~~ 1003 (1178)
+++..++++. .++.|.+||..+++....+.... .....+++ ++..++++. .++.|.++|..+++.+..+.
T Consensus 92 ~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~ 169 (328)
T 3dsm_A 92 LSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELT 169 (328)
T ss_dssp EETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEE
T ss_pred eCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEE
Confidence 6333666665 89999999999999887765332 14456777 344555554 48899999999999887775
Q ss_pred cCCccEEEEEEcC--CEEEEEeCC----------CcEEEEEcCCCeeeeEeccC-CCcEEEEEEecCCCEEEEEeCCCcE
Q 001042 1004 GHTKWIRSIRMDR--DTVITGSDD----------WTARMWSISRGTCDAVLACH-AGPVQCVEYSSSDRGIITGSSDGLL 1070 (1178)
Q Consensus 1004 ~~~~~v~~l~~~~--~~l~sgs~d----------g~I~iwd~~~~~~~~~~~~h-~~~I~~l~~spdg~~L~sgs~Dg~I 1070 (1178)
.. .....+++++ +.++++..+ +.|.+||..+++....+... ......++++|+++.+.++.. .|
T Consensus 170 ~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v 246 (328)
T 3dsm_A 170 IG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DI 246 (328)
T ss_dssp CS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SE
T ss_pred cC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EE
Confidence 43 3345677754 344444443 78999999999887776532 236899999999999888754 89
Q ss_pred EEEECCCCceEEEEEecccCCcE--EEEec-CCCEEEEE----eCCCcEEEEEcC
Q 001042 1071 RFWENDDGGIKCVKNVTIHSSAI--LSINA-GDHWLGIG----AADNSMSLFHRP 1118 (1178)
Q Consensus 1071 ~iwd~~~~~~~~~~~~~~h~~~i--~~is~-dg~~Lasg----s~Dg~I~iwd~~ 1118 (1178)
.+||..+++......+..+.... .+++| ++...++. ..++.|.+||..
T Consensus 247 ~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 247 WRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp EEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred EEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 99999887532111112112223 45677 55666666 578999999986
No 197
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.34 E-value=2.7e-10 Score=126.42 Aligned_cols=209 Identities=9% Similarity=-0.008 Sum_probs=159.9
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccc-cce--EEEecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCC-C
Q 001042 849 EDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHT-RTV--RAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHD-A 924 (1178)
Q Consensus 849 ~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~-~~V--~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~-~ 924 (1178)
..+++|++++.|+.|.+||.+ +.+.+..+..+. ..+ ..+.++|+.++ +.++.|..||. +|+.+..+..+. .
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~--tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~ 77 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKD--TKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGC 77 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETT--TTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTC
T ss_pred CCCcEEEeeCCCCEEEEEECC--CCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCc
Confidence 457899999999999999964 455556666554 222 35689999888 45788999999 899999988653 4
Q ss_pred ceEEEEEe-CCCeEEEEeC-CCeEEEEeCCCCeEEEEecC------CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Q 001042 925 QVSCVRML-SGERVLTASH-DGTVKMWDVRTDTCVATVGR------CSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAG 996 (1178)
Q Consensus 925 ~V~~l~~~-~~~~l~sgs~-dg~V~iwd~~~~~~~~~~~~------~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~ 996 (1178)
.+.++.+. +++.+++.+. ++.|..+|. +|+.+..+.. +......++..++|+++++...++.|..||.. |
T Consensus 78 ~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G 155 (276)
T 3no2_A 78 EMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G 155 (276)
T ss_dssp EEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred cccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C
Confidence 67788877 7788888777 888888886 6777666532 11234566789999999999999999999988 9
Q ss_pred ceEEEEecCCccEEEEEE--cCCEEEEEeCCCcEEEEEcCCCeeeeEeccCC------CcEEEEEEecCCCEEEEEe
Q 001042 997 RQMHKFLGHTKWIRSIRM--DRDTVITGSDDWTARMWSISRGTCDAVLACHA------GPVQCVEYSSSDRGIITGS 1065 (1178)
Q Consensus 997 ~~~~~~~~~~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~------~~I~~l~~spdg~~L~sgs 1065 (1178)
+.+.++.... .+.++.. +++.+++++.++.|..+|..+|+.+.++..+. ..+.+++..++|+.+++..
T Consensus 156 ~~~w~~~~~~-~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 156 QLLNSVKLSG-TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp CEEEEEECSS-CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred CEEEEEECCC-CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 9998887653 3334444 56788888888899999999999998886432 2378888889998887764
No 198
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.33 E-value=9.4e-11 Score=149.35 Aligned_cols=239 Identities=14% Similarity=0.025 Sum_probs=159.5
Q ss_pred ccccceEEEEeeeccceeccccccCCCCEEEEEeCC-----CcEEEEcCCCCCceeeEe-ecccccceEEEecCCCEEEE
Q 001042 825 GHAGAITALHCVTKREVWDLVGDREDAGFFISGSTD-----CLVKIWDPSLRGSELRAT-LKGHTRTVRAINSDRGKVVS 898 (1178)
Q Consensus 825 gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~D-----g~I~iWd~~~~~~~~~~~-l~~h~~~V~~~s~d~~~l~s 898 (1178)
+|...+.+++|| |||++||.++.+ .+|++||+.. ++.... .......-.+|+|| +.|+.
T Consensus 160 ~~~~~~~~~~~S------------PDG~~la~~~~~~G~e~~~i~v~dl~t--g~~~~~~~~~~~~~~~~wspD-~~l~~ 224 (741)
T 1yr2_A 160 DGATALDAWAAS------------DDGRLLAYSVQDGGSDWRTVKFVGVAD--GKPLADELKWVKFSGLAWLGN-DALLY 224 (741)
T ss_dssp ---EEEEEEEEC------------TTSSEEEEEEEETTCSEEEEEEEETTT--CCEEEEEEEEEESCCCEESTT-SEEEE
T ss_pred CCCEEEEeEEEC------------CCCCEEEEEEcCCCCceEEEEEEECCC--CCCCCccCCCceeccEEEECC-CEEEE
Confidence 454567788887 999999987654 3699999873 333222 21111122368999 99988
Q ss_pred EeCCCc--------------EEEEECCCCc----EEEEecCCCCceEEEEEe-CCCeEEEEeCCC-----eEEEEeCCCC
Q 001042 899 GSDDQS--------------VLVWDKQTSQ----LLEELKGHDAQVSCVRML-SGERVLTASHDG-----TVKMWDVRTD 954 (1178)
Q Consensus 899 gs~dg~--------------I~iwd~~t~~----~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg-----~V~iwd~~~~ 954 (1178)
++.++. |++|++.+++ .+.....+...+..+.|+ ++..++..+.++ .|.+||+.++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~ 304 (741)
T 1yr2_A 225 SRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNG 304 (741)
T ss_dssp EECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETT
T ss_pred EEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCC
Confidence 877654 8999998775 222223344468899999 677777766543 8999999887
Q ss_pred --eEEEEecCCCCCEEEEEEeCCCCEEEEEeC----CCeEEEEECCCC--ceEEEEecCCccEEEEEEcCC-EEEEEeCC
Q 001042 955 --TCVATVGRCSSAVLCMEYDDSTGILAAGGR----DAVANIWDIRAG--RQMHKFLGHTKWIRSIRMDRD-TVITGSDD 1025 (1178)
Q Consensus 955 --~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~----dg~I~lwD~~~~--~~~~~~~~~~~~v~~l~~~~~-~l~sgs~d 1025 (1178)
++...+..+...+... ++++|+.|+..+. ++.|.+||+.++ +....+..+...+..+++.++ .+++...|
T Consensus 305 ~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~d 383 (741)
T 1yr2_A 305 KIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAGNRLFASYIHD 383 (741)
T ss_dssp EECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEBTEEEEEEEET
T ss_pred CCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEECCEEEEEEEEC
Confidence 4134444444444444 3488888888775 456999999875 333334445556667777655 67777889
Q ss_pred CcEEEEEcC-CCeeeeEecc-CCCcEEEEEEecCCCEEEEEe----CCCcEEEEECCCCc
Q 001042 1026 WTARMWSIS-RGTCDAVLAC-HAGPVQCVEYSSSDRGIITGS----SDGLLRFWENDDGG 1079 (1178)
Q Consensus 1026 g~I~iwd~~-~~~~~~~~~~-h~~~I~~l~~spdg~~L~sgs----~Dg~I~iwd~~~~~ 1079 (1178)
+..++|.+. +++....+.. +.+.+..+.++|+++.++... ..++|..||+.+++
T Consensus 384 g~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 384 AKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp TEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred CEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 887777654 4555666654 366788999999988666332 35789999999884
No 199
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.32 E-value=1.8e-10 Score=129.09 Aligned_cols=238 Identities=9% Similarity=-0.004 Sum_probs=166.9
Q ss_pred ceEEecccccceEEEEeeeccceeccccccCCCC-EEEEEeCCCcEEEEcCCCCCceeeEeecccccceEE--EecCCCE
Q 001042 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAG-FFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGK 895 (1178)
Q Consensus 819 ~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~-~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~--~s~d~~~ 895 (1178)
.+..+..+.....+++|+ ++++ +++++..++.|..||... . ...+..+...+.+ ++++|+.
T Consensus 19 ~~~~l~~~~~~~eg~~~d------------~~g~~l~~~~~~~~~i~~~~~~~--~--~~~~~~~~~~~~~l~~~~dg~l 82 (296)
T 3e5z_A 19 EARRLADGFTWTEGPVYV------------PARSAVIFSDVRQNRTWAWSDDG--Q--LSPEMHPSHHQNGHCLNKQGHL 82 (296)
T ss_dssp CCEEEECCCSSEEEEEEE------------GGGTEEEEEEGGGTEEEEEETTS--C--EEEEESSCSSEEEEEECTTCCE
T ss_pred cEEEEecCCccccCCeEe------------CCCCEEEEEeCCCCEEEEEECCC--C--eEEEECCCCCcceeeECCCCcE
Confidence 445566666777888887 7888 788888899999999762 2 3445555555554 5789998
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEecCC----CCceEEEEEe-CCCeEEE----Ee-------------CCCeEEEEeCCC
Q 001042 896 VVSGSDDQSVLVWDKQTSQLLEELKGH----DAQVSCVRML-SGERVLT----AS-------------HDGTVKMWDVRT 953 (1178)
Q Consensus 896 l~sgs~dg~I~iwd~~t~~~~~~l~~h----~~~V~~l~~~-~~~~l~s----gs-------------~dg~V~iwd~~~ 953 (1178)
+++...++.|.+||..+++........ ...+..+++. ++..+++ |+ ..+.|..+|..
T Consensus 83 ~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~- 161 (296)
T 3e5z_A 83 IACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD- 161 (296)
T ss_dssp EEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-
T ss_pred EEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-
Confidence 877777789999999888765443221 2345678888 5555555 22 13466666665
Q ss_pred CeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC-CCce---EEEEecCCccEEEEEEcCC-EEEEEeCCCcE
Q 001042 954 DTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIR-AGRQ---MHKFLGHTKWIRSIRMDRD-TVITGSDDWTA 1028 (1178)
Q Consensus 954 ~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~-~~~~---~~~~~~~~~~v~~l~~~~~-~l~sgs~dg~I 1028 (1178)
++. ..+..+......++|+|+++.+++.+.++.|.+||+. +++. ...+..+...+..++++++ .+.++. ++.|
T Consensus 162 g~~-~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v 239 (296)
T 3e5z_A 162 GTL-SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGV 239 (296)
T ss_dssp SCE-EEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEE
T ss_pred CCE-EEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeE
Confidence 443 3344556678999999999998777778999999997 4544 2333334455667888543 344444 8899
Q ss_pred EEEEcCCCeeeeEeccCCCcEEEEEE-ecCCCEEEEEeCCCcEEEEECCCC
Q 001042 1029 RMWSISRGTCDAVLACHAGPVQCVEY-SSSDRGIITGSSDGLLRFWENDDG 1078 (1178)
Q Consensus 1029 ~iwd~~~~~~~~~~~~h~~~I~~l~~-spdg~~L~sgs~Dg~I~iwd~~~~ 1078 (1178)
.+||.. ++.+..+..+.. +++++| +++++.|++++.++ +.-++..+.
T Consensus 240 ~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~ 287 (296)
T 3e5z_A 240 HVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVR 287 (296)
T ss_dssp EEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCC
T ss_pred EEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEcccc
Confidence 999976 777778877777 999999 58999999888764 555566655
No 200
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.32 E-value=9.7e-11 Score=128.91 Aligned_cols=233 Identities=9% Similarity=-0.006 Sum_probs=156.0
Q ss_pred ceEEEEEe-CCCeEE-EEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEE
Q 001042 925 QVSCVRML-SGERVL-TASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKF 1002 (1178)
Q Consensus 925 ~V~~l~~~-~~~~l~-sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~ 1002 (1178)
...++++. ++..++ +.+.++.|..||..++............+.+++++++|+.+++.. ++.|.+||..+.... .+
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-EC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-ee
Confidence 67788887 455444 336789999999766543322223335678899999998665555 889999998765433 23
Q ss_pred e-cCCccEEEEEEcC--CEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 001042 1003 L-GHTKWIRSIRMDR--DTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGG 1079 (1178)
Q Consensus 1003 ~-~~~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~ 1079 (1178)
. .....+.++++++ +.+++...++.|.+|+..+.............+.+++++++|+.+++...++.|.+||..++.
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~ 182 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN 182 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCC
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCc
Confidence 2 2335788898853 456666678899999865544332222333467899999999977777778899999988763
Q ss_pred eEEEEEecccCCcE--EEEecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCC
Q 001042 1080 IKCVKNVTIHSSAI--LSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLER 1157 (1178)
Q Consensus 1080 ~~~~~~~~~h~~~i--~~is~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg 1157 (1178)
. ......+.... .+++++|.+.++...++.|.+|+...... ......+...+.+++++++|
T Consensus 183 ~--~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~---------------~~~~~~~~~~p~~i~~~~~g 245 (270)
T 1rwi_B 183 Q--VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS---------------TVLPFTGLNTPLAVAVDSDR 245 (270)
T ss_dssp E--EECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC---------------EECCCCSCSCEEEEEECTTC
T ss_pred e--EeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc---------------eeeccCCCCCceeEEECCCC
Confidence 2 22222222334 34578887777777788999999863211 11112233568999999999
Q ss_pred CEEEEEeCCCcEEEEECCC
Q 001042 1158 KRICSGGRNGLLRLWEATI 1176 (1178)
Q Consensus 1158 ~~Las~s~Dg~V~IWdv~t 1176 (1178)
+++++...++.|++++...
T Consensus 246 ~l~v~~~~~~~v~~~~~~~ 264 (270)
T 1rwi_B 246 TVYVADRGNDRVVKLTSLE 264 (270)
T ss_dssp CEEEEEGGGTEEEEECCCG
T ss_pred CEEEEECCCCEEEEEcCCC
Confidence 9888888999999999864
No 201
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.32 E-value=5.5e-10 Score=130.44 Aligned_cols=269 Identities=10% Similarity=0.017 Sum_probs=189.6
Q ss_pred ecCCCEEEEEeCC-----CcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEe----------CCCeEEEEeCCC
Q 001042 890 NSDRGKVVSGSDD-----QSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTAS----------HDGTVKMWDVRT 953 (1178)
Q Consensus 890 s~d~~~l~sgs~d-----g~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs----------~dg~V~iwd~~~ 953 (1178)
.++++.+++.... +.|.++|..+++.+.++.....+ .+.++ +++.++++. .++.|.++|..+
T Consensus 81 ~~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t 158 (426)
T 3c75_H 81 APDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT 158 (426)
T ss_dssp CCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred CCCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC
Confidence 3567776666543 69999999999999999865555 88998 677777765 467999999999
Q ss_pred CeEEEEecCC-------CCCEEEEEEeCCCCEEEEEeC--CCeEEEEECCCCceEEEEecCCccEEEEEE-cCCEEEEEe
Q 001042 954 DTCVATVGRC-------SSAVLCMEYDDSTGILAAGGR--DAVANIWDIRAGRQMHKFLGHTKWIRSIRM-DRDTVITGS 1023 (1178)
Q Consensus 954 ~~~~~~~~~~-------~~~I~~l~~sp~~~~l~sgs~--dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~-~~~~l~sgs 1023 (1178)
++.+..+... ......++++|||++++++.. ++.|.+.|+.+++.+.++..... ..+.. ....+++.+
T Consensus 159 ~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~--~~~~p~g~~~~v~~~ 236 (426)
T 3c75_H 159 FLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC--YHIFPASPTVFYMNC 236 (426)
T ss_dssp CCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEE
T ss_pred CcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc--eeeccCCCcEEEEEc
Confidence 9988877432 123457899999999999874 57899999999999888764322 22223 345777788
Q ss_pred CCCcEEEEEcCCCeeeeE----eccCCCcE-EEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEec-----------
Q 001042 1024 DDWTARMWSISRGTCDAV----LACHAGPV-QCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVT----------- 1087 (1178)
Q Consensus 1024 ~dg~I~iwd~~~~~~~~~----~~~h~~~I-~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~----------- 1087 (1178)
.||.+.+.+..+++.... +.....++ ..+.+++++..++..+..+.|.+.|..++.......+.
T Consensus 237 ~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~ 316 (426)
T 3c75_H 237 RDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDW 316 (426)
T ss_dssp TTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTE
T ss_pred CCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccccccc
Confidence 899999999866655432 11111221 23567999988888788899999998765433222211
Q ss_pred -ccCCcEEEEecCCCEEEEEeC----------CCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCC
Q 001042 1088 -IHSSAILSINAGDHWLGIGAA----------DNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLE 1156 (1178)
Q Consensus 1088 -~h~~~i~~is~dg~~Lasgs~----------Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspd 1156 (1178)
........++++++.+.+... ++.|.+.|..+.+ .+..+.. + ....+++|+||
T Consensus 317 ~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k---------vv~~I~v-----g--~~P~gia~spD 380 (426)
T 3c75_H 317 RPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE---------RINKIEL-----G--HEIDSINVSQD 380 (426)
T ss_dssp EECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC---------EEEEEEE-----E--EEECEEEECCS
T ss_pred ccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCe---------EEEEEEC-----C--CCcCeEEEccC
Confidence 111123578999887776642 3579999998442 2222211 1 13778999999
Q ss_pred CC-EEEEEe-CCCcEEEEECCCCC
Q 001042 1157 RK-RICSGG-RNGLLRLWEATINI 1178 (1178)
Q Consensus 1157 g~-~Las~s-~Dg~V~IWdv~tg~ 1178 (1178)
|+ +++++. .++.|.|+|+.+++
T Consensus 381 g~~~lyv~n~~s~~VsVID~~t~k 404 (426)
T 3c75_H 381 AEPLLYALSAGTQTLHIYDAATGE 404 (426)
T ss_dssp SSCEEEEEETTTTEEEEEETTTCC
T ss_pred CCEEEEEEcCCCCeEEEEECCCCC
Confidence 99 888888 59999999999874
No 202
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.31 E-value=1.2e-09 Score=126.97 Aligned_cols=258 Identities=14% Similarity=0.104 Sum_probs=171.8
Q ss_pred CCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCce---
Q 001042 850 DAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQV--- 926 (1178)
Q Consensus 850 d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V--- 926 (1178)
++..++.++.++.|..+|... .+..................+..+++++.++.+..+|..+|+.+..........
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~t--G~~~W~~~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~ 179 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSD--GTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR 179 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTT--CCEEEEEECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred eCCEEEEEcCCCEEEEEECCC--CCEEEEEeCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence 366788888999999999763 333333322211111111235688889999999999999999988776433221
Q ss_pred --EEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCC----EE---EEEEeC--CCCEEEEEeCCCeEEEEECCC
Q 001042 927 --SCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSA----VL---CMEYDD--STGILAAGGRDAVANIWDIRA 995 (1178)
Q Consensus 927 --~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~----I~---~l~~sp--~~~~l~sgs~dg~I~lwD~~~ 995 (1178)
..... .++.+++++.+|.+..+|..+|+.+......... +. .+...| .+..+++++.+|.+..+|.++
T Consensus 180 ~~~~~~~-~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~t 258 (376)
T 3q7m_A 180 GESAPTT-AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRS 258 (376)
T ss_dssp CCCCCEE-ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTT
T ss_pred CCCCcEE-ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCC
Confidence 11122 3567888899999999999999987766432110 00 011111 346778888899999999999
Q ss_pred CceEEEEecCCccEEEEEEcCCEEEEEeCCCcEEEEEcCCCeeeeEecc-CCCcEEEEEEecCCCEEEEEeCCCcEEEEE
Q 001042 996 GRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLAC-HAGPVQCVEYSSSDRGIITGSSDGLLRFWE 1074 (1178)
Q Consensus 996 ~~~~~~~~~~~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd 1074 (1178)
++.+..... .....+..+++.++.++.++.+..+|..+++.+..... ....+...... +..|+.++.+|.+..+|
T Consensus 259 G~~~w~~~~--~~~~~~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~~g~l~~~d 334 (376)
T 3q7m_A 259 GQIMWKREL--GSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGDSEGYLHWIN 334 (376)
T ss_dssp CCEEEEECC--CCEEEEEEETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEECTTSEEEEEE
T ss_pred CcEEeeccC--CCCCCceEECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEEEEeCCCeEEEEE
Confidence 998866542 34556777888999999999999999999998777652 22223333333 56788899999999999
Q ss_pred CCCCceEEEEEecccCCcEEE-EecCCCEEEEEeCCCcEEEEE
Q 001042 1075 NDDGGIKCVKNVTIHSSAILS-INAGDHWLGIGAADNSMSLFH 1116 (1178)
Q Consensus 1075 ~~~~~~~~~~~~~~h~~~i~~-is~dg~~Lasgs~Dg~I~iwd 1116 (1178)
..+|+....... ....+.+ ....+..|++++.+|.|..|+
T Consensus 335 ~~tG~~~~~~~~--~~~~~~~~~~~~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 335 VEDGRFVAQQKV--DSSGFQTEPVAADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp TTTCCEEEEEEC--CTTCBCSCCEEETTEEEEEBTTSCEEEEE
T ss_pred CCCCcEEEEEec--CCCcceeCCEEECCEEEEEeCCCEEEEEe
Confidence 999954433333 2222211 122356788899999999887
No 203
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.30 E-value=3.1e-10 Score=124.77 Aligned_cols=234 Identities=8% Similarity=-0.037 Sum_probs=159.5
Q ss_pred ceEEEEeeeccceeccccccCCCCEEE-EEeCCCcEEEEcCCCCCceeeEeecccccce--EEEecCCCEEEEEeCCCcE
Q 001042 829 AITALHCVTKREVWDLVGDREDAGFFI-SGSTDCLVKIWDPSLRGSELRATLKGHTRTV--RAINSDRGKVVSGSDDQSV 905 (1178)
Q Consensus 829 ~V~~l~fs~~~~~~~~~~~s~d~~~La-sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V--~~~s~d~~~l~sgs~dg~I 905 (1178)
...++++. ++|++++ +.+.++.|.+||.. +.........+...+ .+++++++.+++.. ++.|
T Consensus 25 ~p~~i~~~------------~~g~l~v~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i 89 (270)
T 1rwi_B 25 SPSGVAVD------------SAGNVYVTSEGMYGRVVKLATG--STGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRV 89 (270)
T ss_dssp CEEEEEEC------------TTCCEEEEECSSSCEEEEECC-------EECCCCSCCSCCCEEECTTCCEEEEET-TTEE
T ss_pred CccceEEC------------CCCCEEEEccCCCCcEEEecCC--CcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEE
Confidence 56777776 8888777 54778999999965 222211111221222 35678888666555 8899
Q ss_pred EEEECCCCcEEEEec-CCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEe
Q 001042 906 LVWDKQTSQLLEELK-GHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGG 983 (1178)
Q Consensus 906 ~iwd~~t~~~~~~l~-~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs 983 (1178)
.+||..++.. ..+. .....+.++++. ++..+++...++.|.+|+..+.............+.+++++++|+.+++..
T Consensus 90 ~~~d~~~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~ 168 (270)
T 1rwi_B 90 VTLAAGSNNQ-TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDT 168 (270)
T ss_dssp EEECTTCSCC-EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEG
T ss_pred EEEeCCCceE-eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEEC
Confidence 9999876554 3333 233678899998 566555656788999998765544332223334678899999999777777
Q ss_pred CCCeEEEEECCCCceEEEEecCCccEEEEEEcCC--EEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEE
Q 001042 984 RDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGI 1061 (1178)
Q Consensus 984 ~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~--~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L 1061 (1178)
.++.|.+||..+.........+...+.+++++++ .+++...++.|.+||............+...+.+++++++|+.+
T Consensus 169 ~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~ 248 (270)
T 1rwi_B 169 DNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVY 248 (270)
T ss_dssp GGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEE
T ss_pred CCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEE
Confidence 7889999998876654433334467888999654 55555568899999986654433222334578999999999988
Q ss_pred EEEeCCCcEEEEECCCC
Q 001042 1062 ITGSSDGLLRFWENDDG 1078 (1178)
Q Consensus 1062 ~sgs~Dg~I~iwd~~~~ 1078 (1178)
++...++.|++++....
T Consensus 249 v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 249 VADRGNDRVVKLTSLEH 265 (270)
T ss_dssp EEEGGGTEEEEECCCGG
T ss_pred EEECCCCEEEEEcCCCc
Confidence 88889999999998765
No 204
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.27 E-value=6.9e-09 Score=120.27 Aligned_cols=265 Identities=9% Similarity=-0.009 Sum_probs=175.6
Q ss_pred EEecCCCCccccccc-------ceeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceecccc
Q 001042 774 SMFSREASSRSHSFS-------RVRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVG 846 (1178)
Q Consensus 774 ~aFSpdg~~las~~~-------dI~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~ 846 (1178)
...+||++++.++.. .|.++|.++++ .+..+.....+ .++++
T Consensus 26 ~~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~-------------------~~~~i~~g~~p--~i~~s---------- 74 (373)
T 2mad_H 26 EAPGADGRRSYINLPAHHSAIIQQWVLDAGSGS-------------------ILGHVNGGFLP--NPVAA---------- 74 (373)
T ss_pred ccCCCCCCEEEEeCCcccCCccEEEEEECCCCe-------------------EEEEecCCCCC--CeEEC----------
Confidence 345577776655554 46888988766 34455443444 78887
Q ss_pred ccCCCCEEEEEe----------CCCcEEEEcCCCCCceeeEeecc---------cccceEEEecCCCEEEEEeC--CCcE
Q 001042 847 DREDAGFFISGS----------TDCLVKIWDPSLRGSELRATLKG---------HTRTVRAINSDRGKVVSGSD--DQSV 905 (1178)
Q Consensus 847 ~s~d~~~Lasgs----------~Dg~I~iWd~~~~~~~~~~~l~~---------h~~~V~~~s~d~~~l~sgs~--dg~I 905 (1178)
|||++++.+. .++.|.+||.. ..+......- ....-..++|||++|+++.. ++.|
T Consensus 75 --pDg~~lyv~n~~~~~~~rg~~~~~v~viD~~--t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v 150 (373)
T 2mad_H 75 --HSGSEFALASTSFSRIAKGKRTDYVEVFDPV--TFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAV 150 (373)
T ss_pred --CCCCEEEEEeccccccccCCCCCeEEEEECC--CCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeE
Confidence 9999998886 36789999976 3333333221 11223468999999998874 5789
Q ss_pred EEEECCCCcEEEE-ecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEec-----CCCCC-EEEEEEeCCCC
Q 001042 906 LVWDKQTSQLLEE-LKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVG-----RCSSA-VLCMEYDDSTG 977 (1178)
Q Consensus 906 ~iwd~~t~~~~~~-l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~-----~~~~~-I~~l~~sp~~~ 977 (1178)
.++| .+++.+.. +.... .+ ..+. ....+++.+.||.+.++|. +++...... ..... .....+.+++.
T Consensus 151 ~viD-~t~~~~~~~i~~~~-~~--~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 225 (373)
T 2mad_H 151 GLVV-QGGSSDDQLLSSPT-CY--HIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSG 225 (373)
T ss_pred EEEE-CCCCEEeEEcCCCc-eE--EEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCC
Confidence 9999 99998887 65322 22 1122 3456777888999999999 887664322 11112 23355677666
Q ss_pred EEEEEeCCCeEEEEECCCCc--eEEEEecC----------CccEEEEEE--cCCEEEEEeC----------CCcEEEEEc
Q 001042 978 ILAAGGRDAVANIWDIRAGR--QMHKFLGH----------TKWIRSIRM--DRDTVITGSD----------DWTARMWSI 1033 (1178)
Q Consensus 978 ~l~sgs~dg~I~lwD~~~~~--~~~~~~~~----------~~~v~~l~~--~~~~l~sgs~----------dg~I~iwd~ 1033 (1178)
.++..+.++.+.+.|+.++. .+..+... ......+++ +++.+.++.. ++.|.++|.
T Consensus 226 ~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~ 305 (373)
T 2mad_H 226 RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTG 305 (373)
T ss_pred EEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEEC
Confidence 65555678899999997653 22222111 112223445 4456665543 357999999
Q ss_pred CCCeeeeEeccCCCcEEEEEEecCCC-EEEEEe-CCCcEEEEECCCCc
Q 001042 1034 SRGTCDAVLACHAGPVQCVEYSSSDR-GIITGS-SDGLLRFWENDDGG 1079 (1178)
Q Consensus 1034 ~~~~~~~~~~~h~~~I~~l~~spdg~-~L~sgs-~Dg~I~iwd~~~~~ 1079 (1178)
.+++.+.++.. .....+++|+|||+ .++++. .++.|.+||..+++
T Consensus 306 ~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 306 LVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred CCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCC
Confidence 99999888863 34689999999999 677776 58999999999984
No 205
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.26 E-value=4.1e-10 Score=143.43 Aligned_cols=269 Identities=12% Similarity=0.075 Sum_probs=171.8
Q ss_pred CCCCEEEEEeCCCc---EEEEcCCCC---CceeeEee------cccccceE--EEecCCCEEEEEeCC-----CcEEEEE
Q 001042 849 EDAGFFISGSTDCL---VKIWDPSLR---GSELRATL------KGHTRTVR--AINSDRGKVVSGSDD-----QSVLVWD 909 (1178)
Q Consensus 849 ~d~~~Lasgs~Dg~---I~iWd~~~~---~~~~~~~l------~~h~~~V~--~~s~d~~~l~sgs~d-----g~I~iwd 909 (1178)
+||++++....++. -.+|..... +......+ .+|...+. ++||||++|+.++.+ .+|++||
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d 195 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG 195 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence 78998887765543 566654322 22222211 22322333 579999999887654 4699999
Q ss_pred CCCCcEEEEecCCCCceEEEEEeCCCeEEEEeCCCe--------------EEEEeCCCCeE--EEEecC--CCCCEEEEE
Q 001042 910 KQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGT--------------VKMWDVRTDTC--VATVGR--CSSAVLCME 971 (1178)
Q Consensus 910 ~~t~~~~~~l~~h~~~V~~l~~~~~~~l~sgs~dg~--------------V~iwd~~~~~~--~~~~~~--~~~~I~~l~ 971 (1178)
+.+++.+... .+...+..++|++++.|+.++.++. |++|++.++.. ...+.. +...+..+.
T Consensus 196 l~tg~~~~~~-~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~ 274 (741)
T 1yr2_A 196 VADGKPLADE-LKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGAS 274 (741)
T ss_dssp TTTCCEEEEE-EEEEESCCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEE
T ss_pred CCCCCCCCcc-CCCceeccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEE
Confidence 9999876531 1222235788984488888776554 89999987652 222322 334588999
Q ss_pred EeCCCCEEEEEeCCC-----eEEEEECCCC--ceEEEEecCCccEE-EEEEcCCEEEEEeC----CCcEEEEEcCCC--e
Q 001042 972 YDDSTGILAAGGRDA-----VANIWDIRAG--RQMHKFLGHTKWIR-SIRMDRDTVITGSD----DWTARMWSISRG--T 1037 (1178)
Q Consensus 972 ~sp~~~~l~sgs~dg-----~I~lwD~~~~--~~~~~~~~~~~~v~-~l~~~~~~l~sgs~----dg~I~iwd~~~~--~ 1037 (1178)
|+|||++|+..+.++ .|++||+.++ +....+..+...+. .+..+++.++..+. ++.|.+||+.++ .
T Consensus 275 ~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~ 354 (741)
T 1yr2_A 275 VSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPR 354 (741)
T ss_dssp ECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCE
T ss_pred ECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccc
Confidence 999999988877544 8999999877 31445544444333 33447787777765 345999999874 3
Q ss_pred eeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECC-CCceEEEEEecc-cCCcEEEE--ecCCCEEEEE----eCC
Q 001042 1038 CDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWEND-DGGIKCVKNVTI-HSSAILSI--NAGDHWLGIG----AAD 1109 (1178)
Q Consensus 1038 ~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~-~~~~~~~~~~~~-h~~~i~~i--s~dg~~Lasg----s~D 1109 (1178)
....+..+...+..+.++ ++..+++...|+..++|.++ ++ .....+.. +...+..+ +++++.++.. ...
T Consensus 355 ~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g--~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P 431 (741)
T 1yr2_A 355 FDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDG--KPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQP 431 (741)
T ss_dssp EEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTS--CEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEE
T ss_pred cEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC--CceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCC
Confidence 444445555567778887 56678888889988777654 34 23444443 34555555 6788766533 234
Q ss_pred CcEEEEEcCCCc
Q 001042 1110 NSMSLFHRPQER 1121 (1178)
Q Consensus 1110 g~I~iwd~~~~~ 1121 (1178)
++|++||+.+++
T Consensus 432 ~~i~~~d~~tg~ 443 (741)
T 1yr2_A 432 ATVLALDPATAK 443 (741)
T ss_dssp EEEEEEETTTTE
T ss_pred CEEEEEECCCCc
Confidence 789999987654
No 206
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.24 E-value=2.8e-09 Score=122.18 Aligned_cols=281 Identities=13% Similarity=0.055 Sum_probs=185.7
Q ss_pred EEEEecCCCCccccccc------c-eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceecc
Q 001042 772 VQSMFSREASSRSHSFS------R-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDL 844 (1178)
Q Consensus 772 ~~~aFSpdg~~las~~~------d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~ 844 (1178)
+..+..|||+.+.+... + |.+.|..+.+ .+..+..-..+ .++++
T Consensus 36 ~~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~-------------------v~~~I~vG~~P--~va~s-------- 86 (386)
T 3sjl_D 36 ILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGR-------------------VIGMIDGGFLP--NPVVA-------- 86 (386)
T ss_dssp BCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTE-------------------EEEEEEECSSC--EEEEC--------
T ss_pred eeeccCCCCCEEEEEcCcccCCCCEEEEEECCCCe-------------------EEEEEECCCCC--cEEEC--------
Confidence 34567889887666643 3 8889988777 55666554445 38887
Q ss_pred ccccCCCCEEEEEe----------CCCcEEEEcCCCCCceeeEeecc---------cccceEEEecCCCEEEEEeC--CC
Q 001042 845 VGDREDAGFFISGS----------TDCLVKIWDPSLRGSELRATLKG---------HTRTVRAINSDRGKVVSGSD--DQ 903 (1178)
Q Consensus 845 ~~~s~d~~~Lasgs----------~Dg~I~iWd~~~~~~~~~~~l~~---------h~~~V~~~s~d~~~l~sgs~--dg 903 (1178)
|||+++++++ .++.|.+||.. ..+....+.- ....-..+++||++++++.. ++
T Consensus 87 ----pDG~~lyVan~~~~r~~~G~~~~~VsviD~~--t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~ 160 (386)
T 3sjl_D 87 ----DDGSFIAHASTVFSRIARGERTDYVEVFDPV--TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAP 160 (386)
T ss_dssp ----TTSSCEEEEEEEEEETTEEEEEEEEEEECTT--TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSC
T ss_pred ----CCCCEEEEEcccccccccCCCCCEEEEEECC--CCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCC
Confidence 8999887765 36789999976 4444444421 12334578999999998864 68
Q ss_pred cEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCC-CeEEEEecCC----CCCEE-EEEEe-CC
Q 001042 904 SVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRT-DTCVATVGRC----SSAVL-CMEYD-DS 975 (1178)
Q Consensus 904 ~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~-~~~~~~~~~~----~~~I~-~l~~s-p~ 975 (1178)
.|.++|+.+++.+.++.... . ...+. ....+++.+.||++.+.++.+ ++........ ...+. ...|. ++
T Consensus 161 ~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~d 237 (386)
T 3sjl_D 161 AVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKA 237 (386)
T ss_dssp EEEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTT
T ss_pred eEEEEECCCCcEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCC
Confidence 99999999999999886432 1 22334 456788899999999999976 5653322111 12221 24665 56
Q ss_pred CCEEEEEeCCCeEEEEECCCCc--eEEEEe------------cCCccEEEEEEcCCEEEEEeC----------CCcEEEE
Q 001042 976 TGILAAGGRDAVANIWDIRAGR--QMHKFL------------GHTKWIRSIRMDRDTVITGSD----------DWTARMW 1031 (1178)
Q Consensus 976 ~~~l~sgs~dg~I~lwD~~~~~--~~~~~~------------~~~~~v~~l~~~~~~l~sgs~----------dg~I~iw 1031 (1178)
|++++ .+.+|.+++.|..++. .+..+. ........+.-+++.++.... .+.|.+.
T Consensus 238 G~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~vi 316 (386)
T 3sjl_D 238 GRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVL 316 (386)
T ss_dssp TEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEE
T ss_pred CcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEE
Confidence 65444 6668999999997654 232222 111122233334555555432 2579999
Q ss_pred EcCCCeeeeEeccCCCcEEEEEEecCCC-EEEEE-eCCCcEEEEECCCCceEEEEEecccCCc
Q 001042 1032 SISRGTCDAVLACHAGPVQCVEYSSSDR-GIITG-SSDGLLRFWENDDGGIKCVKNVTIHSSA 1092 (1178)
Q Consensus 1032 d~~~~~~~~~~~~h~~~I~~l~~spdg~-~L~sg-s~Dg~I~iwd~~~~~~~~~~~~~~h~~~ 1092 (1178)
|+.+++.+..+.. ...++++++++|++ +|+++ ..++.|.++|..+++........+|...
T Consensus 317 D~~t~kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p~~ 378 (386)
T 3sjl_D 317 DAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQ 378 (386)
T ss_dssp ETTTCCEEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCC
T ss_pred ECCCCeEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCCce
Confidence 9999999988874 34688999999997 66664 4589999999999954333333445443
No 207
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.23 E-value=1.9e-09 Score=134.96 Aligned_cols=266 Identities=13% Similarity=0.141 Sum_probs=179.3
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCceeeEeeccccc----------ce-EEEecCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 001042 851 AGFFISGSTDCLVKIWDPSLRGSELRATLKGHTR----------TV-RAINSDRGKVVSGSDDQSVLVWDKQTSQLLEEL 919 (1178)
Q Consensus 851 ~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~----------~V-~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l 919 (1178)
+..+++++.++.|.-+|.. +.+.+........ .+ ..+..++..+++++.|+.+..+|..+|+.+..+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~--tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTR--TGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETT--TTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECC--CCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 4556666677888888865 2333333322111 01 122335778999999999999999999999888
Q ss_pred cCC-C----CceEEEEEeCCCeEEEEeC------CCeEEEEeCCCCeEEEEecCCCCC----------------------
Q 001042 920 KGH-D----AQVSCVRMLSGERVLTASH------DGTVKMWDVRTDTCVATVGRCSSA---------------------- 966 (1178)
Q Consensus 920 ~~h-~----~~V~~l~~~~~~~l~sgs~------dg~V~iwd~~~~~~~~~~~~~~~~---------------------- 966 (1178)
..+ . ..+.+.-...++.+++++. +|.|+.+|..+|+.+..+......
T Consensus 155 ~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~ 234 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGK 234 (677)
T ss_dssp ETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGC
T ss_pred cCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCc
Confidence 754 2 1222111113456666553 799999999999998876432211
Q ss_pred ----------EEEEEEeCCCCEEEEEeCCC-------------------eEEEEECCCCceEEEEecCCc----------
Q 001042 967 ----------VLCMEYDDSTGILAAGGRDA-------------------VANIWDIRAGRQMHKFLGHTK---------- 1007 (1178)
Q Consensus 967 ----------I~~l~~sp~~~~l~sgs~dg-------------------~I~lwD~~~~~~~~~~~~~~~---------- 1007 (1178)
...+++++++..++.++.++ .|..+|.++|+.+..++....
T Consensus 235 ~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~ 314 (677)
T 1kb0_A 235 WWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQP 314 (677)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCC
Confidence 13578899999999887664 599999999999888764211
Q ss_pred c-EEEEEEcC---CEEEEEeCCCcEEEEEcCCCeeeeEeccCC-----------CcE-----------------------
Q 001042 1008 W-IRSIRMDR---DTVITGSDDWTARMWSISRGTCDAVLACHA-----------GPV----------------------- 1049 (1178)
Q Consensus 1008 ~-v~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~-----------~~I----------------------- 1049 (1178)
+ +.....++ ..++.++.+|.++++|..+|+.+....... .++
T Consensus 315 p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~ 394 (677)
T 1kb0_A 315 MILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHN 394 (677)
T ss_dssp CEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSC
T ss_pred cEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccC
Confidence 1 22333456 578999999999999999999877654211 011
Q ss_pred -EEEEEecCCCEEEEEeCC-------------------------------------------CcEEEEECCCCceEEEEE
Q 001042 1050 -QCVEYSSSDRGIITGSSD-------------------------------------------GLLRFWENDDGGIKCVKN 1085 (1178)
Q Consensus 1050 -~~l~~spdg~~L~sgs~D-------------------------------------------g~I~iwd~~~~~~~~~~~ 1085 (1178)
..++++|++.++++...+ |.|..||+.+++. +..
T Consensus 395 w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~--~W~ 472 (677)
T 1kb0_A 395 WHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKA--AWS 472 (677)
T ss_dssp SSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEE--EEE
T ss_pred CCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcE--Eee
Confidence 156889998888776432 7899999999953 333
Q ss_pred ecccCC-cEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 001042 1086 VTIHSS-AILSINAGDHWLGIGAADNSMSLFHRPQE 1120 (1178)
Q Consensus 1086 ~~~h~~-~i~~is~dg~~Lasgs~Dg~I~iwd~~~~ 1120 (1178)
...... .-..++.++..+++|+.||.+++||..++
T Consensus 473 ~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG 508 (677)
T 1kb0_A 473 VEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATG 508 (677)
T ss_dssp EEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred cCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCC
Confidence 332211 11235677888999999999999999844
No 208
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.22 E-value=2.4e-08 Score=111.12 Aligned_cols=270 Identities=5% Similarity=-0.053 Sum_probs=178.4
Q ss_pred CCcceEEEEecCCCCcccccccc--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceecc
Q 001042 767 IGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDL 844 (1178)
Q Consensus 767 h~~~i~~~aFSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~ 844 (1178)
......++++++||+..++...+ |.+||.+ +.. ....+..+...+.++++.
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~------------------~~~~~~~~~~~~~~i~~~-------- 70 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRI------------------KEFEVPTPDAKVMCLIVS-------- 70 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE------------------EEEECSSTTCCEEEEEEC--------
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cce------------------EEEECCCCCCcceeEEEC--------
Confidence 34567788999999977766543 9999877 331 111122334567888876
Q ss_pred ccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEE--EecCCCEEEEEeCCCcEEEEECCCCcEEE-EecC
Q 001042 845 VGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLLE-ELKG 921 (1178)
Q Consensus 845 ~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~-~l~~ 921 (1178)
+++++.++...++.|..||.. +.............+.+ +.+++..+++...++.|..||.. ++... .+..
T Consensus 71 ----~~g~l~v~~~~~~~v~~~d~~--g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~ 143 (300)
T 2qc5_A 71 ----SLGDIWFTENGANKIGKLSKK--GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPN 143 (300)
T ss_dssp ----TTSCEEEEETTTTEEEEECTT--SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSS
T ss_pred ----CCCCEEEEecCCCeEEEECCC--CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCC
Confidence 788888877778899999965 22222222222334444 46788877777778899999987 66543 2333
Q ss_pred CCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEE-ecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceE
Q 001042 922 HDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVAT-VGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQM 999 (1178)
Q Consensus 922 h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~-~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~ 999 (1178)
....+.++++. +++.+++...++.|..+|. +++.... .......+.+++++++|+..++....+.|..||. +++..
T Consensus 144 ~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~ 221 (300)
T 2qc5_A 144 KGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEIS 221 (300)
T ss_dssp TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE
T ss_pred CCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEE
Confidence 45678889887 4554555555789999998 5554432 2234457899999999987776666788999998 55443
Q ss_pred EE-EecCCccEEEEEEcC--CEEEEEeCCCcEEEEEcCCCeeee-EeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 001042 1000 HK-FLGHTKWIRSIRMDR--DTVITGSDDWTARMWSISRGTCDA-VLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWEN 1075 (1178)
Q Consensus 1000 ~~-~~~~~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~-~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~ 1075 (1178)
.. .......+.++++++ +..++...++.|..||. +++... .+......+.+++++++|+..++.. + .|..+|.
T Consensus 222 ~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 222 EYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred EEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 32 233456788898864 34444445689999998 454332 2333445688999999998655544 4 6666664
No 209
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.21 E-value=4.1e-08 Score=109.14 Aligned_cols=270 Identities=8% Similarity=-0.012 Sum_probs=177.1
Q ss_pred cccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEE--EecCCCEEEEEeCCC
Q 001042 826 HAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQ 903 (1178)
Q Consensus 826 H~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~--~s~d~~~l~sgs~dg 903 (1178)
....+.++++. ++|++.++...++.|.+||.. ... ....+..+...+.+ +.+++...++...++
T Consensus 18 ~~~~p~~i~~d------------~~g~l~v~~~~~~~v~~~~~~-~~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~ 83 (300)
T 2qc5_A 18 PDSGPYGITSS------------EDGKVWFTQHKANKISSLDQS-GRI-KEFEVPTPDAKVMCLIVSSLGDIWFTENGAN 83 (300)
T ss_dssp TTCCEEEEEEC------------TTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTT
T ss_pred CCCCcceeeEC------------CCCCEEEEcCCCCeEEEECCC-Cce-EEEECCCCCCcceeEEECCCCCEEEEecCCC
Confidence 44567788876 789888887788999999965 222 21223333344554 467788777776688
Q ss_pred cEEEEECCCCcEEE-EecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEE-ecCCCCCEEEEEEeCCCCEEE
Q 001042 904 SVLVWDKQTSQLLE-ELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVAT-VGRCSSAVLCMEYDDSTGILA 980 (1178)
Q Consensus 904 ~I~iwd~~t~~~~~-~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~-~~~~~~~I~~l~~sp~~~~l~ 980 (1178)
.|..||.. ++... ........+.++++. ++..+++...++.|..||.. ++.... +......+.+++++++++..+
T Consensus 84 ~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v 161 (300)
T 2qc5_A 84 KIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWF 161 (300)
T ss_dssp EEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEE
T ss_pred eEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEE
Confidence 99999988 65532 223344678899888 45555555558899999987 655432 333456789999999999666
Q ss_pred EEeCCCeEEEEECCCCceEEE-EecCCccEEEEEEcC--CEEEEEeCCCcEEEEEcCCCeeeeE-eccCCCcEEEEEEec
Q 001042 981 AGGRDAVANIWDIRAGRQMHK-FLGHTKWIRSIRMDR--DTVITGSDDWTARMWSISRGTCDAV-LACHAGPVQCVEYSS 1056 (1178)
Q Consensus 981 sgs~dg~I~lwD~~~~~~~~~-~~~~~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~-~~~h~~~I~~l~~sp 1056 (1178)
+...++.|..+|. +++.... .......+.++++++ +..++....+.|..||. +++.... ...+...+.++++++
T Consensus 162 ~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~ 239 (300)
T 2qc5_A 162 TENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGK 239 (300)
T ss_dssp EETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECS
T ss_pred EecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECC
Confidence 6666789999998 5554432 223345688888864 34555555678999998 4544332 333456789999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcE--EEEecCCCEEEEEeCCCcEEEEEc
Q 001042 1057 SDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAI--LSINAGDHWLGIGAADNSMSLFHR 1117 (1178)
Q Consensus 1057 dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i--~~is~dg~~Lasgs~Dg~I~iwd~ 1117 (1178)
+|+..++...++.|..||. ++... ..........+ ..++++|++.++.. . .|..+|.
T Consensus 240 ~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 240 NSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp TTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred CCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 9987666666789999998 45332 22223222233 34467887655544 4 6766665
No 210
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.18 E-value=5.1e-09 Score=131.44 Aligned_cols=265 Identities=14% Similarity=0.144 Sum_probs=177.0
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCceeeEeeccccc----------ce-EEEecCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 001042 851 AGFFISGSTDCLVKIWDPSLRGSELRATLKGHTR----------TV-RAINSDRGKVVSGSDDQSVLVWDKQTSQLLEEL 919 (1178)
Q Consensus 851 ~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~----------~V-~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l 919 (1178)
+..+++++.++.|.-+|.. +.+.+.....+.. .+ .....++..+++++.|+.+..+|..+|+.+..+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~--tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDAR--DGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETT--TCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECC--CCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 5566677778888888876 2333333322211 01 112335678999999999999999999999877
Q ss_pred cCC--CC---ceEE-EEEeCCCeEEEEe------CCCeEEEEeCCCCeEEEEecCCC-----------------------
Q 001042 920 KGH--DA---QVSC-VRMLSGERVLTAS------HDGTVKMWDVRTDTCVATVGRCS----------------------- 964 (1178)
Q Consensus 920 ~~h--~~---~V~~-l~~~~~~~l~sgs------~dg~V~iwd~~~~~~~~~~~~~~----------------------- 964 (1178)
... .. .+.+ ... .++.+++++ .+|.|..||.++|+.+..+....
T Consensus 148 ~~~~~~~~~~~~~~sP~v-~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 226 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRV-VNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA 226 (689)
T ss_dssp ECCSCTTSCCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred cCcCCCCCCccccCCcEE-ECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence 642 11 1111 111 244555554 37899999999999987764210
Q ss_pred --------CCEEEEEEeCCCCEEEEEeCCCe-------------------EEEEECCCCceEEEEecC--C-------cc
Q 001042 965 --------SAVLCMEYDDSTGILAAGGRDAV-------------------ANIWDIRAGRQMHKFLGH--T-------KW 1008 (1178)
Q Consensus 965 --------~~I~~l~~sp~~~~l~sgs~dg~-------------------I~lwD~~~~~~~~~~~~~--~-------~~ 1008 (1178)
.....+++++++..++.++.++. |..+|.++|+.+..++.. . ..
T Consensus 227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~ 306 (689)
T 1yiq_A 227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQH 306 (689)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCC
Confidence 01125789999999999988764 999999999999887642 1 11
Q ss_pred --EEEEEEcCC---EEEEEeCCCcEEEEEcCCCeeeeEeccCC-C-----------------------------------
Q 001042 1009 --IRSIRMDRD---TVITGSDDWTARMWSISRGTCDAVLACHA-G----------------------------------- 1047 (1178)
Q Consensus 1009 --v~~l~~~~~---~l~sgs~dg~I~iwd~~~~~~~~~~~~h~-~----------------------------------- 1047 (1178)
+..+.+++. .++.++.+|.++++|..+|+.+....... .
T Consensus 307 ~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~ 386 (689)
T 1yiq_A 307 MILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFW 386 (689)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTT
T ss_pred cEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcc
Confidence 123344554 78899999999999999998874332110 0
Q ss_pred ---cEEEEEEecCCCEEEEEeC---------------------------------------------CCcEEEEECCCCc
Q 001042 1048 ---PVQCVEYSSSDRGIITGSS---------------------------------------------DGLLRFWENDDGG 1079 (1178)
Q Consensus 1048 ---~I~~l~~spdg~~L~sgs~---------------------------------------------Dg~I~iwd~~~~~ 1079 (1178)
.-..++++|+...+++.+. +|.|..||+.+|+
T Consensus 387 Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~ 466 (689)
T 1yiq_A 387 GAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQ 466 (689)
T ss_dssp CSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTE
T ss_pred cccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCC
Confidence 0113788998888776532 3779999999994
Q ss_pred eEEEEEecccCCcE-EEEecCCCEEEEEeCCCcEEEEEcCCC
Q 001042 1080 IKCVKNVTIHSSAI-LSINAGDHWLGIGAADNSMSLFHRPQE 1120 (1178)
Q Consensus 1080 ~~~~~~~~~h~~~i-~~is~dg~~Lasgs~Dg~I~iwd~~~~ 1120 (1178)
.+.....+.... -.++..+.++++|+.||.++.||..++
T Consensus 467 --~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG 506 (689)
T 1yiq_A 467 --AAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTG 506 (689)
T ss_dssp --EEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred --eEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCC
Confidence 444444333221 245678889999999999999999844
No 211
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.15 E-value=2.1e-09 Score=121.85 Aligned_cols=293 Identities=14% Similarity=0.061 Sum_probs=189.5
Q ss_pred EEecCCCCcccccccc-eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceeccccccCCCC
Q 001042 774 SMFSREASSRSHSFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAG 852 (1178)
Q Consensus 774 ~aFSpdg~~las~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~ 852 (1178)
.+...+|...+.+... |..|| .+++ .+.....+...+.++... +++.
T Consensus 25 ~~~d~~g~l~v~t~~~~l~~~d-~~g~-------------------~~~~~~~~~~~~~~~~~~------------~~g~ 72 (330)
T 3hxj_A 25 PILAKNGTIYLGSSNKNLYAIN-TDGS-------------------VKWFFKSGEIIECRPSIG------------KDGT 72 (330)
T ss_dssp CEECTTSCEECSSTTTTTEEEC-TTSC-------------------EEESSCGGGEEEECCEET------------TTTE
T ss_pred ceEccCCeEEEEcCCCEEEEEC-CCCc-------------------EEEEEecCCCcccceEEe------------cCCc
Confidence 3666777765544344 88898 6655 222222333344555442 4444
Q ss_pred EEEEEeCCCcEEEEcCCCCCceeeEeecccccc--eEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEE
Q 001042 853 FFISGSTDCLVKIWDPSLRGSELRATLKGHTRT--VRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVR 930 (1178)
Q Consensus 853 ~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~--V~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~ 930 (1178)
+..++.+ |..+|.. +.. .......... ...+. +..+..++.++.+..+|.. ++.......+...+.++.
T Consensus 73 -l~v~t~~--l~~~d~~--g~~-~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~ 143 (330)
T 3hxj_A 73 -IYFGSDK--VYAINPD--GTE-KWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPI 143 (330)
T ss_dssp -ECCSSCE--EEEECCC--GGG-GGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCE
T ss_pred -EEEecCc--EEEECCC--CcE-EEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeE
Confidence 5555544 8888843 222 2222211111 11233 6778889889999999998 887777766666666666
Q ss_pred EeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEE
Q 001042 931 MLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIR 1010 (1178)
Q Consensus 931 ~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~ 1010 (1178)
..++..++.++.++.|..+|.. ++...........+.++..++++... +++ +.+..+| .+++...........+.
T Consensus 144 ~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~-v~t--~~l~~~d-~~g~~~~~~~~~~~~~~ 218 (330)
T 3hxj_A 144 VSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIY-FGS--DKVYAIN-PDGTEKWNFYAGYWTVT 218 (330)
T ss_dssp ECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEE-EES--SSEEEEC-TTSCEEEEECCSSCCCS
T ss_pred EcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEE-EEe--CEEEEEC-CCCcEEEEEccCCccee
Confidence 6656678889989999999998 87776666555667777887777744 455 7899999 78887777766666777
Q ss_pred EEEEcCC-EEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEeccc
Q 001042 1011 SIRMDRD-TVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIH 1089 (1178)
Q Consensus 1011 ~l~~~~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h 1089 (1178)
++..+++ .+..++.++.+..+| .+++....+......+.++...+++ .|+.++.+|.|..+|. +++.. ......
T Consensus 219 ~~~~~~~g~l~v~t~~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~--~~~~~~ 293 (330)
T 3hxj_A 219 RPAISEDGTIYVTSLDGHLYAIN-PDGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEK--WNFETG 293 (330)
T ss_dssp CCEECTTSCEEEEETTTEEEEEC-TTSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEE--EEEECS
T ss_pred ceEECCCCeEEEEcCCCeEEEEC-CCCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEE--EEEEcC
Confidence 8888765 888888888999998 4566666665444444556666556 4777788888999996 56433 333322
Q ss_pred CCcEEEE--ecCCCEEEEEeCCCcEEEEEcC
Q 001042 1090 SSAILSI--NAGDHWLGIGAADNSMSLFHRP 1118 (1178)
Q Consensus 1090 ~~~i~~i--s~dg~~Lasgs~Dg~I~iwd~~ 1118 (1178)
...+.++ ..+|. |..|+.+|.+++...+
T Consensus 294 ~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 294 SWIIATPVIDENGT-IYFGTRNGKFYALFNL 323 (330)
T ss_dssp SCCCSCCEECTTCC-EEEECTTSCEEEEEC-
T ss_pred CccccceEEcCCCE-EEEEcCCCeEEEEecc
Confidence 3333333 35555 5668899999988765
No 212
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.13 E-value=1.3e-08 Score=114.42 Aligned_cols=227 Identities=8% Similarity=0.065 Sum_probs=154.8
Q ss_pred EEecCCCEEEE-------EeCCCcEEEEECCCCcEEEEec----CCCCceEEEEEeCC-CeEEEEeCCCeEEEEeCCCCe
Q 001042 888 AINSDRGKVVS-------GSDDQSVLVWDKQTSQLLEELK----GHDAQVSCVRMLSG-ERVLTASHDGTVKMWDVRTDT 955 (1178)
Q Consensus 888 ~~s~d~~~l~s-------gs~dg~I~iwd~~t~~~~~~l~----~h~~~V~~l~~~~~-~~l~sgs~dg~V~iwd~~~~~ 955 (1178)
++++++..+++ ++.++.|.+||..+++...... ++...+.++++.++ ..++.++.++.|.+||.. ++
T Consensus 24 ~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~ 102 (314)
T 1pjx_A 24 VFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD-GT 102 (314)
T ss_dssp EECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT-SC
T ss_pred eECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEEEEeCC-CC
Confidence 46788887777 5778899999988887643222 24467889999855 666666666689999998 76
Q ss_pred EEEE-ecC----CCCCEEEEEEeCCCCEEEEEeCC---------------CeEEEEECCCCceEEEEecCCccEEEEEEc
Q 001042 956 CVAT-VGR----CSSAVLCMEYDDSTGILAAGGRD---------------AVANIWDIRAGRQMHKFLGHTKWIRSIRMD 1015 (1178)
Q Consensus 956 ~~~~-~~~----~~~~I~~l~~sp~~~~l~sgs~d---------------g~I~lwD~~~~~~~~~~~~~~~~v~~l~~~ 1015 (1178)
.... ... ....+.+++++++|+++++...+ +.|..||.. ++... +..+......++++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~-~~~~~~~~~~i~~~ 180 (314)
T 1pjx_A 103 FEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ-VDTAFQFPNGIAVR 180 (314)
T ss_dssp EEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE-EEEEESSEEEEEEE
T ss_pred EEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE-eccCCCCcceEEEe
Confidence 5433 221 12357899999999887776654 578888865 54433 22333456777777
Q ss_pred ----CC--EEEEE-eCCCcEEEEEcC-CCe-----eeeEeccCC-CcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceE
Q 001042 1016 ----RD--TVITG-SDDWTARMWSIS-RGT-----CDAVLACHA-GPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIK 1081 (1178)
Q Consensus 1016 ----~~--~l~sg-s~dg~I~iwd~~-~~~-----~~~~~~~h~-~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~ 1081 (1178)
++ .++.+ ..++.|.+||.. +++ ....+..+. ..+..++++++|++.++...++.|..||..+++.
T Consensus 181 ~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~- 259 (314)
T 1pjx_A 181 HMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQP- 259 (314)
T ss_dssp ECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSC-
T ss_pred cccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcE-
Confidence 55 45444 567899999986 443 222333343 5688999999999888887889999999886643
Q ss_pred EEEEecccCCcEEEE--ecCCCEEEE-EeCCCcEEEEEcCC
Q 001042 1082 CVKNVTIHSSAILSI--NAGDHWLGI-GAADNSMSLFHRPQ 1119 (1178)
Q Consensus 1082 ~~~~~~~h~~~i~~i--s~dg~~Las-gs~Dg~I~iwd~~~ 1119 (1178)
...+..+...+.++ +++|+.|++ ...++.|..|++..
T Consensus 260 -~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 260 -KMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp -SEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred -eEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 23333444555544 689985554 45568899999863
No 213
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.12 E-value=1.4e-07 Score=110.79 Aligned_cols=245 Identities=7% Similarity=0.007 Sum_probs=161.1
Q ss_pred CceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCC--eEEEEECCCCceEE
Q 001042 924 AQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDA--VANIWDIRAGRQMH 1000 (1178)
Q Consensus 924 ~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg--~I~lwD~~~~~~~~ 1000 (1178)
.....+++. ++..+++...++.|+.||..++........... .. ++|+++++.++++..++ .|.+||..++....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 357788998 455555555679999999988877655544332 33 99999999998888766 89999987765544
Q ss_pred EE----ecCCccEEEEEEcC--CEEEEEeCCCcEEEEEcCCCeeeeE----eccCCCcE--EEEEEecC-CCEEEEEeCC
Q 001042 1001 KF----LGHTKWIRSIRMDR--DTVITGSDDWTARMWSISRGTCDAV----LACHAGPV--QCVEYSSS-DRGIITGSSD 1067 (1178)
Q Consensus 1001 ~~----~~~~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~----~~~h~~~I--~~l~~spd-g~~L~sgs~D 1067 (1178)
.+ ......+.++++++ ..|+.+..++.|+.||..++..... ..++...- ..++|+|+ +.++++...+
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~ 288 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL 288 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence 43 22445677888876 4666677889999999987754322 22222222 39999995 5556666678
Q ss_pred CcEEEEECCCCceEEEEEecccC-----------------CcEEEEecCCCEEEEEe-CCCcEEEEEcCCCccccccCCC
Q 001042 1068 GLLRFWENDDGGIKCVKNVTIHS-----------------SAILSINAGDHWLGIGA-ADNSMSLFHRPQERLGGFSGTG 1129 (1178)
Q Consensus 1068 g~I~iwd~~~~~~~~~~~~~~h~-----------------~~i~~is~dg~~Lasgs-~Dg~I~iwd~~~~~~~~~~~~g 1129 (1178)
+.|+.|+.+.. .. .+.++. ..-.+++++|+++++-+ .++.|+.|+..++.+..+.+.+
T Consensus 289 ~~I~~~~~~g~-~~---~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~ 364 (409)
T 3hrp_A 289 SSVYKITPDGE-CE---WFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQV 364 (409)
T ss_dssp TEEEEECTTCC-EE---EEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECT
T ss_pred CEEEEEecCCC-EE---EEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCC
Confidence 89999987653 12 222221 12255688999888877 8899999997655443222221
Q ss_pred CCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001042 1130 SKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEAT 1175 (1178)
Q Consensus 1130 ~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~ 1175 (1178)
.. ..+.--......-.....++++++|.++++-..++.|+.++++
T Consensus 365 ~~-~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 365 DV-ASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp TC-BSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred CC-CCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence 00 0000000001123458899999999888888888999988763
No 214
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.12 E-value=3.1e-08 Score=111.30 Aligned_cols=239 Identities=10% Similarity=0.089 Sum_probs=157.2
Q ss_pred ecccccceEEEEeeeccceeccccccCCCCEEEE-------EeCCCcEEEEcCCCCCceeeEeec----ccccceEE--E
Q 001042 823 IRGHAGAITALHCVTKREVWDLVGDREDAGFFIS-------GSTDCLVKIWDPSLRGSELRATLK----GHTRTVRA--I 889 (1178)
Q Consensus 823 l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Las-------gs~Dg~I~iWd~~~~~~~~~~~l~----~h~~~V~~--~ 889 (1178)
+.+.-....+++|. +++.++++ ++.++.|.+||.... +...... ++...+.+ +
T Consensus 13 ~~~~~~~~~~~~~~------------~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g--~~~~~~~~~~~~~~~~~~~i~~ 78 (314)
T 1pjx_A 13 VTEDIPGAEGPVFD------------KNGDFYIVAPEVEVNGKPAGEILRIDLKTG--KKTVICKPEVNGYGGIPAGCQC 78 (314)
T ss_dssp EECCCTTCEEEEEC------------TTSCEEEEETTCEETTEECCEEEEECTTTC--CEEEEECCEETTEECCEEEEEE
T ss_pred hhccCCCccCceEC------------CCCCEEEEEeccccCCCCCCEEEEEeCCCC--cEEEEEecccCCCCCCCceEEE
Confidence 33334456778886 78888888 577889999996522 2221111 23344554 4
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCcEEEE-ecC----CCCceEEEEEe-CCCeEEEEeCC---------------CeEEE
Q 001042 890 NSDRGKVVSGSDDQSVLVWDKQTSQLLEE-LKG----HDAQVSCVRML-SGERVLTASHD---------------GTVKM 948 (1178)
Q Consensus 890 s~d~~~l~sgs~dg~I~iwd~~t~~~~~~-l~~----h~~~V~~l~~~-~~~~l~sgs~d---------------g~V~i 948 (1178)
++++..++.++.++.|.+||.+ ++.... ... ....+.++++. ++..+++...+ +.|..
T Consensus 79 ~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~ 157 (314)
T 1pjx_A 79 DRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYC 157 (314)
T ss_dssp CSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEE
T ss_pred ecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEE
Confidence 6772345555555579999998 765433 221 12357889998 45555554444 57888
Q ss_pred EeCCCCeEEEEecCCCCCEEEEEEe----CCCCEEEEE-eCCCeEEEEECC-CCce-----EEEEecCC-ccEEEEEEc-
Q 001042 949 WDVRTDTCVATVGRCSSAVLCMEYD----DSTGILAAG-GRDAVANIWDIR-AGRQ-----MHKFLGHT-KWIRSIRMD- 1015 (1178)
Q Consensus 949 wd~~~~~~~~~~~~~~~~I~~l~~s----p~~~~l~sg-s~dg~I~lwD~~-~~~~-----~~~~~~~~-~~v~~l~~~- 1015 (1178)
||.. ++..... ........++++ ++++.++++ ..++.|.+||.. +++. ...+..+. ..+..++++
T Consensus 158 ~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~ 235 (314)
T 1pjx_A 158 FTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE 235 (314)
T ss_dssp ECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT
T ss_pred ECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECC
Confidence 8876 5543332 233456889999 999766555 467899999986 4432 22233333 567788885
Q ss_pred -CCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEE-eCCCcEEEEECCCC
Q 001042 1016 -RDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITG-SSDGLLRFWENDDG 1078 (1178)
Q Consensus 1016 -~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sg-s~Dg~I~iwd~~~~ 1078 (1178)
++..++...++.|.+||..+++....+..+...+.+++++++|+.|+.+ ..++.|..|++...
T Consensus 236 ~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 236 DNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp TCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred CCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 4466666678899999988787777777677789999999999955544 45678999998753
No 215
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.11 E-value=2.3e-08 Score=116.68 Aligned_cols=257 Identities=13% Similarity=0.048 Sum_probs=175.2
Q ss_pred eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceeccccccCCCCEEEEEe----------C
Q 001042 790 VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGS----------T 859 (1178)
Q Consensus 790 I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs----------~ 859 (1178)
|.+.|..+.+ .+..+..-..+ .++++ |||++++++. .
T Consensus 101 VsVID~~t~~-------------------vv~~I~vG~~P--gia~S------------pDgk~lyVan~~~~~~~~G~~ 147 (426)
T 3c75_H 101 QFVIDGSTGR-------------------ILGMTDGGFLP--HPVAA------------EDGSFFAQASTVFERIARGKR 147 (426)
T ss_dssp EEEEETTTTE-------------------EEEEEEECSSC--EEEEC------------TTSSCEEEEEEEEEETTEEEE
T ss_pred EEEEECCCCE-------------------EEEEEECCCCC--ceEEC------------CCCCEEEEEeccccccccCCC
Confidence 8899988877 55556544455 78887 8999888776 4
Q ss_pred CCcEEEEcCCCCCceeeEeecc---------cccceEEEecCCCEEEEEeC--CCcEEEEECCCCcEEEEecCCCCceEE
Q 001042 860 DCLVKIWDPSLRGSELRATLKG---------HTRTVRAINSDRGKVVSGSD--DQSVLVWDKQTSQLLEELKGHDAQVSC 928 (1178)
Q Consensus 860 Dg~I~iWd~~~~~~~~~~~l~~---------h~~~V~~~s~d~~~l~sgs~--dg~I~iwd~~t~~~~~~l~~h~~~V~~ 928 (1178)
++.|.++|.. ..+....+.- ....-..+++||++++++.. ++.|.+.|+.+++.+.++..... ..
T Consensus 148 ~~~VsviD~~--t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~--~~ 223 (426)
T 3c75_H 148 TDYVEVFDPV--TFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC--YH 223 (426)
T ss_dssp EEEEEEECTT--TCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EE
T ss_pred CCEEEEEECC--CCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc--ee
Confidence 6789999976 3444444321 11122368999999999874 57899999999999988874321 12
Q ss_pred EEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEe----cCCCCCE-EEEEEeCCCCEEEEEeCCCeEEEEECCCCceE--EE
Q 001042 929 VRMLSGERVLTASHDGTVKMWDVRTDTCVATV----GRCSSAV-LCMEYDDSTGILAAGGRDAVANIWDIRAGRQM--HK 1001 (1178)
Q Consensus 929 l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~----~~~~~~I-~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~--~~ 1001 (1178)
+.-.....+++.+.||.+.+.+..+++..... .....++ ..+.+++++..++..+..|.+.+.|..+.... ..
T Consensus 224 ~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~ 303 (426)
T 3c75_H 224 IFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAP 303 (426)
T ss_dssp EEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCC
T ss_pred eccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeee
Confidence 22223466778888999999998766655321 1111111 23567899888888888899999998765422 11
Q ss_pred Ee------------cCCccEEEEEEcCCEEEEEeC----------CCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCC
Q 001042 1002 FL------------GHTKWIRSIRMDRDTVITGSD----------DWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDR 1059 (1178)
Q Consensus 1002 ~~------------~~~~~v~~l~~~~~~l~sgs~----------dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~ 1059 (1178)
+. ........+..+++.+++... ++.|.++|..+.+.+.++... ....+++|+|||+
T Consensus 304 ~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~ 382 (426)
T 3c75_H 304 IEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAE 382 (426)
T ss_dssp EESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSS
T ss_pred eeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCC
Confidence 11 000111233335565555432 357999999999999888642 3588999999999
Q ss_pred -EEEEEe-CCCcEEEEECCCCceEEEEEe
Q 001042 1060 -GIITGS-SDGLLRFWENDDGGIKCVKNV 1086 (1178)
Q Consensus 1060 -~L~sgs-~Dg~I~iwd~~~~~~~~~~~~ 1086 (1178)
.+++.. .++.|.++|..++ +.+.++
T Consensus 383 ~~lyv~n~~s~~VsVID~~t~--kvv~tI 409 (426)
T 3c75_H 383 PLLYALSAGTQTLHIYDAATG--EELRSV 409 (426)
T ss_dssp CEEEEEETTTTEEEEEETTTC--CEEEEE
T ss_pred EEEEEEcCCCCeEEEEECCCC--CEEEEe
Confidence 888877 5999999999998 455554
No 216
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.09 E-value=3.8e-08 Score=115.60 Aligned_cols=222 Identities=12% Similarity=0.099 Sum_probs=154.7
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEEeCCC--cEEEEECCCCcEEEEe----cCC
Q 001042 849 EDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQ--SVLVWDKQTSQLLEEL----KGH 922 (1178)
Q Consensus 849 ~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sgs~dg--~I~iwd~~t~~~~~~l----~~h 922 (1178)
++++++++...++.|++||.+ +...............+++++++.++++..++ .|.+|+..++.....+ ...
T Consensus 140 ~~g~lyv~d~~~~~I~~id~~--~g~~~~~~~~~~~~~ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~ 217 (409)
T 3hrp_A 140 GNNTVLAYQRDDPRVRLISVD--DNKVTTVHPGFKGGKPAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTF 217 (409)
T ss_dssp STTEEEEEETTTTEEEEEETT--TTEEEEEEETCCBCBCEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTS
T ss_pred CCCCEEEEecCCCcEEEEECC--CCEEEEeeccCCCCceeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchh
Confidence 889888888888999999976 33333333322222267899999999988866 7999998766554444 224
Q ss_pred CCceEEEEEeC-CCeEEEEeCCCeEEEEeCCCCeEEEE----ecCCCCCE--EEEEEeCC-CCEEEEEeCCCeEEEEECC
Q 001042 923 DAQVSCVRMLS-GERVLTASHDGTVKMWDVRTDTCVAT----VGRCSSAV--LCMEYDDS-TGILAAGGRDAVANIWDIR 994 (1178)
Q Consensus 923 ~~~V~~l~~~~-~~~l~sgs~dg~V~iwd~~~~~~~~~----~~~~~~~I--~~l~~sp~-~~~l~sgs~dg~I~lwD~~ 994 (1178)
...+.++++++ +..++.+..++.|..||..++..... ..+....- ..++++|+ +.++++...++.|+.||..
T Consensus 218 ~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~ 297 (409)
T 3hrp_A 218 SGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPD 297 (409)
T ss_dssp CSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred cCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecC
Confidence 56778899985 67777788889999999987764332 21222222 28999995 5555566678899999976
Q ss_pred CCceEEEEecCC---------------ccEEEEEEc--CCEEEEEe-CCCcEEEEEcCCCeeeeEeccC-----------
Q 001042 995 AGRQMHKFLGHT---------------KWIRSIRMD--RDTVITGS-DDWTARMWSISRGTCDAVLACH----------- 1045 (1178)
Q Consensus 995 ~~~~~~~~~~~~---------------~~v~~l~~~--~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~h----------- 1045 (1178)
.. +..+.++. .....++++ ++.+++-+ .++.|+.||..++.. .++.++
T Consensus 298 g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~ 374 (409)
T 3hrp_A 298 GE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQVDVASQIDGTP 374 (409)
T ss_dssp CC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEECTTCBSCCCBST
T ss_pred CC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCCh
Confidence 43 33333332 347788885 44666666 788999999877764 344433
Q ss_pred ----CCcEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 001042 1046 ----AGPVQCVEYSSSDRGIITGSSDGLLRFWEN 1075 (1178)
Q Consensus 1046 ----~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~ 1075 (1178)
-.....++++++|.++++-..++.|+.+++
T Consensus 375 ~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 375 LEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred hceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 245889999999888888888888888765
No 217
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.07 E-value=8.1e-09 Score=118.61 Aligned_cols=247 Identities=12% Similarity=-0.019 Sum_probs=167.0
Q ss_pred cEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEe----------CCCeEEEEeCCCCeEEEEecCC-------CC
Q 001042 904 SVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTAS----------HDGTVKMWDVRTDTCVATVGRC-------SS 965 (1178)
Q Consensus 904 ~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs----------~dg~V~iwd~~~~~~~~~~~~~-------~~ 965 (1178)
+|.++|..+++.+.++.....+ .+.++ ++..++++. .+++|.+||..+++.+.++... ..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 8889999999999999866666 78998 777787776 3789999999999999887533 12
Q ss_pred CEEEEEEeCCCCEEEEEeC--CCeEEE--EECCCCceEEEEecCCccEEEEEEcC-CEEEEEeCCCcEEEEEcCC-----
Q 001042 966 AVLCMEYDDSTGILAAGGR--DAVANI--WDIRAGRQMHKFLGHTKWIRSIRMDR-DTVITGSDDWTARMWSISR----- 1035 (1178)
Q Consensus 966 ~I~~l~~sp~~~~l~sgs~--dg~I~l--wD~~~~~~~~~~~~~~~~v~~l~~~~-~~l~sgs~dg~I~iwd~~~----- 1035 (1178)
....++++|||++++++.. ++.+.+ +|..+ +..+... +. ..+..++ ..+++.+.||.+.+.|+.+
T Consensus 125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~-~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~ 199 (368)
T 1mda_H 125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC-FHIHPGAAATHYLGSCPASLAASDLAAAPAAA 199 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-SC-CCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc-eEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence 3567999999999999874 467888 99877 4444321 11 1122333 3566777899998899876
Q ss_pred CeeeeE----eccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecc------------cCCcEEEEecC
Q 001042 1036 GTCDAV----LACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTI------------HSSAILSINAG 1099 (1178)
Q Consensus 1036 ~~~~~~----~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~------------h~~~i~~is~d 1099 (1178)
++.... +.....+. . ++++..++..+. +.|.+.|..++.......+.. +......++++
T Consensus 200 ~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~d 274 (368)
T 1mda_H 200 GIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKN 274 (368)
T ss_dssp EECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETT
T ss_pred CeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCC
Confidence 443311 11122343 3 667777666666 999999987653333332211 11222578999
Q ss_pred CCEEEEEeC---------CCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCC-EEEEEe-CCCc
Q 001042 1100 DHWLGIGAA---------DNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERK-RICSGG-RNGL 1168 (1178)
Q Consensus 1100 g~~Lasgs~---------Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~-~Las~s-~Dg~ 1168 (1178)
++.+.++.. ++.+.++|..+.+ .+..+... .....++|+|||+ .+++.. .++.
T Consensus 275 g~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~---------------vv~~i~vg-~~p~gi~~s~Dg~~l~va~~~~~~~ 338 (368)
T 1mda_H 275 TDGIMILTVEHSRSCLAAAENTSSVTASVGQ---------------TSGPISNG-HDSDAIIAAQDGASDNYANSAGTEV 338 (368)
T ss_dssp TTEEEEEEEECSSCTTSCEEEEEEEESSSCC---------------EEECCEEE-EEECEEEECCSSSCEEEEEETTTTE
T ss_pred CCEEEEEeccccCcccccCCCEEEEECCCCe---------------EEEEEECC-CCcceEEECCCCCEEEEEccCCCCe
Confidence 998887643 2356799998542 22222211 1478899999998 456666 5999
Q ss_pred EEEEECCCCC
Q 001042 1169 LRLWEATINI 1178 (1178)
Q Consensus 1169 V~IWdv~tg~ 1178 (1178)
|.++|+.+++
T Consensus 339 VsVID~~t~k 348 (368)
T 1mda_H 339 LDIYDAASDQ 348 (368)
T ss_dssp EEEEESSSCE
T ss_pred EEEEECCCCc
Confidence 9999999863
No 218
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.07 E-value=1.8e-09 Score=122.33 Aligned_cols=290 Identities=15% Similarity=0.080 Sum_probs=183.0
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEEecC-CCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEE
Q 001042 851 AGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSD-RGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCV 929 (1178)
Q Consensus 851 ~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d-~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l 929 (1178)
+..+..++.++.|..|| . . .+.......+...+.++..+ +..+..++.+ +..+|. +++....+..........
T Consensus 30 ~g~l~v~t~~~~l~~~d-~-~-g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~ 103 (330)
T 3hxj_A 30 NGTIYLGSSNKNLYAIN-T-D-GSVKWFFKSGEIIECRPSIGKDGTIYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDF 103 (330)
T ss_dssp TSCEECSSTTTTTEEEC-T-T-SCEEESSCGGGEEEECCEETTTTEECCSSCE--EEEECC-CGGGGGGSCC-----CCE
T ss_pred CCeEEEEcCCCEEEEEC-C-C-CcEEEEEecCCCcccceEEecCCcEEEecCc--EEEECC-CCcEEEEEECCCCcccCc
Confidence 34566677788899999 4 2 22333333333334443322 4456666655 888886 665544433332222223
Q ss_pred EEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccE
Q 001042 930 RMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWI 1009 (1178)
Q Consensus 930 ~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v 1009 (1178)
... ++.++.++.++.+..+|.. ++...........+.++...+++. +.+++.++.+..+|.. ++....+......+
T Consensus 104 ~~~-~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~ 179 (330)
T 3hxj_A 104 TIF-EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAIT 179 (330)
T ss_dssp EEE-TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCC
T ss_pred eEE-CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCce
Confidence 333 6778889999999999998 777766655555566677777776 6667888999999998 88777776666666
Q ss_pred EEEEEc-CCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecc
Q 001042 1010 RSIRMD-RDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTI 1088 (1178)
Q Consensus 1010 ~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~ 1088 (1178)
.++..+ ...+..++ +.+..+| .+++...........+.++..+++|. +..++.++.+..+|. +++ .......
T Consensus 180 ~~~~~d~~g~l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~--~~~~~~~ 252 (330)
T 3hxj_A 180 SAASIGKDGTIYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGT--EKWRFKT 252 (330)
T ss_dssp SCCEECTTCCEEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSC--EEEEEEC
T ss_pred eeeEEcCCCEEEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCC--EeEEeeC
Confidence 777774 44566666 8899999 78877777766666788888888875 555667788888874 442 2233322
Q ss_pred cCCcE--EEEecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCC
Q 001042 1089 HSSAI--LSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRN 1166 (1178)
Q Consensus 1089 h~~~i--~~is~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~D 1166 (1178)
....+ ..+.. +..|.+++.+|.+..+|.. ++ .. |. .......+.++..+++|++ ..++.+
T Consensus 253 ~~~~~~~~~~~~-~g~l~v~t~~ggl~~~d~~-g~---------~~--~~----~~~~~~~~~~~~~d~~g~l-~~gt~~ 314 (330)
T 3hxj_A 253 GKRIESSPVIGN-TDTIYFGSYDGHLYAINPD-GT---------EK--WN----FETGSWIIATPVIDENGTI-YFGTRN 314 (330)
T ss_dssp SSCCCSCCEECT-TSCEEEECTTCEEEEECTT-SC---------EE--EE----EECSSCCCSCCEECTTCCE-EEECTT
T ss_pred CCCccccceEcC-CCeEEEecCCCCEEEECCC-Cc---------EE--EE----EEcCCccccceEEcCCCEE-EEEcCC
Confidence 22211 22233 4456778888889999852 21 11 11 1112344666777788875 458889
Q ss_pred CcEEEEECC
Q 001042 1167 GLLRLWEAT 1175 (1178)
Q Consensus 1167 g~V~IWdv~ 1175 (1178)
|.+++...+
T Consensus 315 G~~~~~~~~ 323 (330)
T 3hxj_A 315 GKFYALFNL 323 (330)
T ss_dssp SCEEEEEC-
T ss_pred CeEEEEecc
Confidence 999987765
No 219
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.06 E-value=9.7e-07 Score=113.16 Aligned_cols=355 Identities=12% Similarity=0.120 Sum_probs=220.6
Q ss_pred cceEEEEecCCCCcccccccceeecccccccCCCCCCCCCCCcCCcccccceEEecccc----cceEEEEeeeccceecc
Q 001042 769 RSWVQSMFSREASSRSHSFSRVRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHA----GAITALHCVTKREVWDL 844 (1178)
Q Consensus 769 ~~i~~~aFSpdg~~las~~~dI~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~----~~V~~l~fs~~~~~~~~ 844 (1178)
..|.++...++|.+.+.+...+..||..++. ...+.... ..|.++...
T Consensus 88 n~I~~i~~d~~g~lWigT~~Gl~~yd~~~~~--------------------f~~~~~~~~~~~~~i~~i~~d-------- 139 (795)
T 4a2l_A 88 DISRIVKTDSQGRVWIGTRDGLSRYDEEKDI--------------------FQNFFYEKNGKHLQVNGIEEI-------- 139 (795)
T ss_dssp SCEEEEEECTTSCEEEEESSCEEEEETTTTE--------------------EEEECCEETTEECCCCEEEEE--------
T ss_pred cceeEEEECCCCCEEEEeCCchheeCCCCCe--------------------EEeccccccCCCceEEEEEEC--------
Confidence 4677888899998665554449999876544 11111111 117777664
Q ss_pred ccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeeccc-ccc-eEEEe--cCCCEEEEEeCCCcEEEEECCCCcEEEEe-
Q 001042 845 VGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGH-TRT-VRAIN--SDRGKVVSGSDDQSVLVWDKQTSQLLEEL- 919 (1178)
Q Consensus 845 ~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h-~~~-V~~~s--~d~~~l~sgs~dg~I~iwd~~t~~~~~~l- 919 (1178)
++|.+.+ ++.+ .|..||.. .........++ ... |.++. .++ .+..++.++.+..||..+++.....
T Consensus 140 ----~~g~lwi-~t~~-gl~~~~~~--~~~~~~~~~~~~~~~~i~~i~~d~~g-~lwigt~~~Gl~~~~~~~~~~~~~~~ 210 (795)
T 4a2l_A 140 ----SPEQLLI-STPE-GLIMFDIK--ESKFIDDSFSTAMHKTIASTLYRQGD-QIYIGTSTDGLYTYSITQKTFEKVIP 210 (795)
T ss_dssp ----ETTEEEE-EETT-EEEEEETT--TTEEECSSSCHHHHTCCEEEEEEETT-EEEEEESSSCEEEEETTTCCEEECC-
T ss_pred ----CCCCEEE-EECC-ceEEEECC--CCEEEeccCCCCCCcceEEEEECCCC-CEEEEECCCCEEEEeCCCCeEEEecC
Confidence 4565554 4444 48889865 22221111111 112 66553 444 5666776656899998877654321
Q ss_pred cCCCCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecC-------CCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 001042 920 KGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGR-------CSSAVLCMEYDDSTGILAAGGRDAVANIWD 992 (1178)
Q Consensus 920 ~~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~-------~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD 992 (1178)
..+...|.++.....+.+..|+.++.+..||..+++....... ....|.++..+++|.+. .|+.+ -|.+||
T Consensus 211 ~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~-Gl~~~~ 288 (795)
T 4a2l_A 211 ILGTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLW-IGTFN-DLNIYH 288 (795)
T ss_dssp ---CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEE-EEESS-CEEEEE
T ss_pred CCCCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEE-EEeCC-hhheEc
Confidence 1234668888777666777787666689999888765443221 23569999999888754 45555 588999
Q ss_pred CCCCceEEEEec-------CCccEEEEEEcCC-EEEEEeCCCcEEEEEcCCCeeeeEecc-------CCCcEEEEEEecC
Q 001042 993 IRAGRQMHKFLG-------HTKWIRSIRMDRD-TVITGSDDWTARMWSISRGTCDAVLAC-------HAGPVQCVEYSSS 1057 (1178)
Q Consensus 993 ~~~~~~~~~~~~-------~~~~v~~l~~~~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~-------h~~~I~~l~~spd 1057 (1178)
..+++....... ....|.++..+.+ .+..|+.++-|..|+..++... .+.. ....|.++..+++
T Consensus 289 ~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~l~~~~V~~i~~d~~ 367 (795)
T 4a2l_A 289 EGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFK-NIRNIPYKNSLSDNVVSCIVEDKD 367 (795)
T ss_dssp TTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSE-EECCCTTSSSCSCSSEEEEEECTT
T ss_pred CCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccce-EEcCCCCCCCCCCCeeEEEEECCC
Confidence 877654432211 2357899988654 7888888888999987655432 2211 2346999999888
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEEec------ccCCcEEEE--ecCCCEEEEEeCCCcEEEEEcCCCccccccCCC
Q 001042 1058 DRGIITGSSDGLLRFWENDDGGIKCVKNVT------IHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTG 1129 (1178)
Q Consensus 1058 g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~------~h~~~i~~i--s~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g 1129 (1178)
|. |..|+.++-|..||..++......... .....|.++ ..+|+.|.+|+.++.+..||..+++...+....
T Consensus 368 g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~ 446 (795)
T 4a2l_A 368 KN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRN 446 (795)
T ss_dssp SC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTT
T ss_pred CC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCC
Confidence 86 666777777999998877433322111 123567776 456775777888888999998754332221100
Q ss_pred CCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001042 1130 SKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATIN 1177 (1178)
Q Consensus 1130 ~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~tg 1177 (1178)
...+...|.++...++|.+.+.. .+ -+.+||..++
T Consensus 447 -----------~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~~ 481 (795)
T 4a2l_A 447 -----------SQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQR 481 (795)
T ss_dssp -----------SCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTTT
T ss_pred -----------CCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCCC
Confidence 01234569999999999866644 44 4778887664
No 220
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.05 E-value=4.1e-09 Score=121.38 Aligned_cols=172 Identities=14% Similarity=0.085 Sum_probs=135.9
Q ss_pred ccceEEEecCCCEEEEEeCCCcEEEEECCCCc-----------EEEEecCCCCceEEEEEeCCCeEEEEeCCCeEEEEeC
Q 001042 883 TRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQ-----------LLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDV 951 (1178)
Q Consensus 883 ~~~V~~~s~d~~~l~sgs~dg~I~iwd~~t~~-----------~~~~l~~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~ 951 (1178)
.....++++....+++|+.++ +.+|++++.+ ..... .+.. |+.++| ++..++++ .+|.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f-d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF-HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE-ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE-CCCEEEEE-cCCcEEEEEc
Confidence 345557899999999999975 6669865433 11222 3556 999999 88889888 8899999999
Q ss_pred CCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEcCCEEEEEeCCCcEEEE
Q 001042 952 RTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMW 1031 (1178)
Q Consensus 952 ~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~~l~sgs~dg~I~iw 1031 (1178)
.+.........+...+.++.+.+.. +++++.||.+.+||+.++.... +...|+|++|+++-++.|..||++++|
T Consensus 114 ~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG~~vg~~dg~i~~~ 187 (388)
T 1xip_A 114 EELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQLAVLLKDRSFQSF 187 (388)
T ss_dssp SSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSEEEEEETTSCEEEE
T ss_pred hhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCceEEEEcCCcEEEE
Confidence 8766555566667778887776543 8889999999999999887643 456899999998889999999999999
Q ss_pred EcCCCee--eeEe------c---cCCCcEEEEEEecCCCEEEEEe
Q 001042 1032 SISRGTC--DAVL------A---CHAGPVQCVEYSSSDRGIITGS 1065 (1178)
Q Consensus 1032 d~~~~~~--~~~~------~---~h~~~I~~l~~spdg~~L~sgs 1065 (1178)
+...+.. ..++ . +|...|.++.|.+++.++++=+
T Consensus 188 ~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 188 AWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred cCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 9888775 5566 2 3778899999999999888643
No 221
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.05 E-value=1.5e-08 Score=127.80 Aligned_cols=244 Identities=12% Similarity=0.049 Sum_probs=158.0
Q ss_pred ccccceEEEEeeeccceeccccccCCCCEEEEEe-----CCCcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEE
Q 001042 825 GHAGAITALHCVTKREVWDLVGDREDAGFFISGS-----TDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSG 899 (1178)
Q Consensus 825 gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs-----~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sg 899 (1178)
+|...+..++|| |||++||.+. .+.+|++||+.. +......+.+....-.+|+ |++.|+.+
T Consensus 126 ~~~~~l~~~~~S------------pDg~~lAy~~~~~G~~~~~i~v~dl~t-g~~~~~~~~~~k~~~~~Ws-Dg~~l~y~ 191 (693)
T 3iuj_A 126 DGTTALDQLSFS------------RDGRILAYSLSLAGSDWREIHLMDVES-KQPLETPLKDVKFSGISWL-GNEGFFYS 191 (693)
T ss_dssp TSCCEEEEEEEC------------TTSSEEEEEEECSSCCEEEEEEEETTT-CSEEEEEEEEEESCCCEEE-TTTEEEEE
T ss_pred CCcEEEEEEEEC------------CCCCEEEEEEecCCCceEEEEEEECCC-CCCCccccCCceeccEEEe-CCCEEEEE
Confidence 355567788887 9999998543 335799999873 2222223333222333688 99999998
Q ss_pred eCCCc-------------EEEEECCCCcE----EEEecC-CCCceEEEEEe-CCCeEEEEeC----CCeEEEEeCCCCe-
Q 001042 900 SDDQS-------------VLVWDKQTSQL----LEELKG-HDAQVSCVRML-SGERVLTASH----DGTVKMWDVRTDT- 955 (1178)
Q Consensus 900 s~dg~-------------I~iwd~~t~~~----~~~l~~-h~~~V~~l~~~-~~~~l~sgs~----dg~V~iwd~~~~~- 955 (1178)
+.+.. |++|++.+++. +..... |...+..+.|+ ++..++.... ++.|.+||+.++.
T Consensus 192 ~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~ 271 (693)
T 3iuj_A 192 SYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA 271 (693)
T ss_dssp ESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC
T ss_pred EecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC
Confidence 87743 99999987642 323333 44567888898 6766654332 3589999997763
Q ss_pred EEEEecCCCCCEEEEEEeCCCCEEEEEeC----CCeEEEEECCCCce--EEEEecCCccEEEEEEcCCEEEEEeC-CC--
Q 001042 956 CVATVGRCSSAVLCMEYDDSTGILAAGGR----DAVANIWDIRAGRQ--MHKFLGHTKWIRSIRMDRDTVITGSD-DW-- 1026 (1178)
Q Consensus 956 ~~~~~~~~~~~I~~l~~sp~~~~l~sgs~----dg~I~lwD~~~~~~--~~~~~~~~~~v~~l~~~~~~l~sgs~-dg-- 1026 (1178)
....+..+....... ++++|..++..+. .+.|..+|+.++.. ...+..+...+..++.+++.|+.... ++
T Consensus 272 ~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~s~~g~~lv~~~~~~g~~ 350 (693)
T 3iuj_A 272 PLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVLTVHSGSGYLFAEYMVDATA 350 (693)
T ss_dssp CCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEETTEEEEEEEETTEE
T ss_pred ceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEEEEEEECCEEEEEEEECCee
Confidence 334444444544444 6666666655443 36899999988754 34454554444477778887766654 44
Q ss_pred cEEEEEcCCCeeeeEec-cCCCcEEEEEEecCCCEEEEEeCC----CcEEEEECCCCceEEEE
Q 001042 1027 TARMWSISRGTCDAVLA-CHAGPVQCVEYSSSDRGIITGSSD----GLLRFWENDDGGIKCVK 1084 (1178)
Q Consensus 1027 ~I~iwd~~~~~~~~~~~-~h~~~I~~l~~spdg~~L~sgs~D----g~I~iwd~~~~~~~~~~ 1084 (1178)
.|++||+..+. ...+. ...+.+..+.++++++.++....+ +++..||+.+++...+.
T Consensus 351 ~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l~ 412 (693)
T 3iuj_A 351 RVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLYR 412 (693)
T ss_dssp EEEEECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEEE
T ss_pred EEEEEECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEEE
Confidence 68899987554 34443 344567788888888877766544 78999999888644443
No 222
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.04 E-value=7e-07 Score=114.48 Aligned_cols=358 Identities=10% Similarity=0.087 Sum_probs=218.8
Q ss_pred eEEEEecCCCCcccccccceeecccccccCCCCCCCCCCCcCCcccccceEEeccc-ccc-eEEEEeeeccceecccccc
Q 001042 771 WVQSMFSREASSRSHSFSRVRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGH-AGA-ITALHCVTKREVWDLVGDR 848 (1178)
Q Consensus 771 i~~~aFSpdg~~las~~~dI~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH-~~~-V~~l~fs~~~~~~~~~~~s 848 (1178)
|.+++..++|++.+.+...+..||.+++.. .....++ ... |.++...
T Consensus 133 i~~i~~d~~g~lwi~t~~gl~~~~~~~~~~-------------------~~~~~~~~~~~~i~~i~~d------------ 181 (795)
T 4a2l_A 133 VNGIEEISPEQLLISTPEGLIMFDIKESKF-------------------IDDSFSTAMHKTIASTLYR------------ 181 (795)
T ss_dssp CCEEEEEETTEEEEEETTEEEEEETTTTEE-------------------ECSSSCHHHHTCCEEEEEE------------
T ss_pred EEEEEECCCCCEEEEECCceEEEECCCCEE-------------------EeccCCCCCCcceEEEEEC------------
Confidence 667788888887666554488888765431 0000011 123 7777764
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCCceeeEe-ecccccceEEEecC-CCEEEEEeCCCcEEEEECCCCcEEEEecC-----
Q 001042 849 EDAGFFISGSTDCLVKIWDPSLRGSELRAT-LKGHTRTVRAINSD-RGKVVSGSDDQSVLVWDKQTSQLLEELKG----- 921 (1178)
Q Consensus 849 ~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~-l~~h~~~V~~~s~d-~~~l~sgs~dg~I~iwd~~t~~~~~~l~~----- 921 (1178)
+++.+ ..|+.++.|..||... ...... ...+...|.++..+ ...+..|+.++-+..||..+++.......
T Consensus 182 ~~g~l-wigt~~~Gl~~~~~~~--~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~ 258 (795)
T 4a2l_A 182 QGDQI-YIGTSTDGLYTYSITQ--KTFEKVIPILGTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPK 258 (795)
T ss_dssp ETTEE-EEEESSSCEEEEETTT--CCEEECC----CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTT
T ss_pred CCCCE-EEEECCCCEEEEeCCC--CeEEEecCCCCCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCcc
Confidence 45554 4466654588898652 222111 11234556666322 34566666555589999887765433221
Q ss_pred --CCCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecC-------CCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 001042 922 --HDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGR-------CSSAVLCMEYDDSTGILAAGGRDAVANIWD 992 (1178)
Q Consensus 922 --h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~-------~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD 992 (1178)
....|.++.....+.+..|+.+ -|.+||..+++....... ....|.++..+++|. +.+|+.++-|..||
T Consensus 259 ~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~ 336 (795)
T 4a2l_A 259 SISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYH 336 (795)
T ss_dssp SCSCSBEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEEC
T ss_pred ccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeC
Confidence 1356888888766678888876 588999888765443211 235799999999887 55677777789998
Q ss_pred CCCCceEEEEe------cCCccEEEEEEcCC-EEEEEeCCCcEEEEEcCCCeeeeEecc--------CCCcEEEEEEecC
Q 001042 993 IRAGRQMHKFL------GHTKWIRSIRMDRD-TVITGSDDWTARMWSISRGTCDAVLAC--------HAGPVQCVEYSSS 1057 (1178)
Q Consensus 993 ~~~~~~~~~~~------~~~~~v~~l~~~~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~--------h~~~I~~l~~spd 1057 (1178)
..++....-.. .....|.++..+.+ .+..|+.++-+..||..+++....... ....|.++..+++
T Consensus 337 ~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~ 416 (795)
T 4a2l_A 337 PIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEK 416 (795)
T ss_dssp GGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETT
T ss_pred CCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCC
Confidence 76554322111 12346899988654 788888888899999877654332211 2357999999998
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEEec--ccCCcEEEEe--cCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCcc
Q 001042 1058 DRGIITGSSDGLLRFWENDDGGIKCVKNVT--IHSSAILSIN--AGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMS 1133 (1178)
Q Consensus 1058 g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~--~h~~~i~~is--~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~ 1133 (1178)
|+.|..|+.++-|..||..+++........ .+...|.++. ++|.+ ..|+. +.+.+||..+++...+.....
T Consensus 417 g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l-wigt~-~Gl~~~~~~~~~~~~~~~~~~--- 491 (795)
T 4a2l_A 417 KSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNL-WLGTL-SALVRFNPEQRSFTTIEKEKD--- 491 (795)
T ss_dssp TTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCE-EEEES-SCEEEEETTTTEEEECCBCTT---
T ss_pred CCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCE-EEEec-CceeEEeCCCCeEEEcccccc---
Confidence 886777887777999999887533322100 2345677774 44554 44555 458889976543211110000
Q ss_pred ceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001042 1134 GWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATIN 1177 (1178)
Q Consensus 1134 ~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~tg 1177 (1178)
...-+...|.++..+++|++.+... +-|..||..++
T Consensus 492 ------~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~ 527 (795)
T 4a2l_A 492 ------GTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGL 527 (795)
T ss_dssp ------CCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETT
T ss_pred ------ccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCC
Confidence 0011235699999999998766543 45777776543
No 223
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.03 E-value=2.1e-07 Score=104.07 Aligned_cols=226 Identities=9% Similarity=-0.009 Sum_probs=144.2
Q ss_pred cCCCCceEEEEEeC--CCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Q 001042 920 KGHDAQVSCVRMLS--GERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGR 997 (1178)
Q Consensus 920 ~~h~~~V~~l~~~~--~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~ 997 (1178)
..+..-..+..|++ +..+++...++.|..||..+++.. .+ .....+.+++++++|++++ +. ++.|.+||..+++
T Consensus 9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~~~~~~~i~~~~dG~l~v-~~-~~~l~~~d~~~g~ 84 (297)
T 3g4e_A 9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV-TMDAPVSSVALRQSGGYVA-TI-GTKFCALNWKEQS 84 (297)
T ss_dssp CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE-ECSSCEEEEEEBTTSSEEE-EE-TTEEEEEETTTTE
T ss_pred ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE-eCCCceEEEEECCCCCEEE-EE-CCeEEEEECCCCc
Confidence 33444556788883 445666667899999999887653 23 2356799999999999554 44 5689999998876
Q ss_pred eEEEEec----CCccEEEEEEcCC--EEEEEeC---------CCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEE
Q 001042 998 QMHKFLG----HTKWIRSIRMDRD--TVITGSD---------DWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGII 1062 (1178)
Q Consensus 998 ~~~~~~~----~~~~v~~l~~~~~--~l~sgs~---------dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~ 1062 (1178)
....... ....+..++++++ ..++... .....+|.+........+..+....+.++|+|+++.++
T Consensus 85 ~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~ly 164 (297)
T 3g4e_A 85 AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFY 164 (297)
T ss_dssp EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEE
T ss_pred EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEE
Confidence 5433222 1245788888643 4443322 12345555443222223333445678999999998764
Q ss_pred -EEeCCCcEEEEEC--CCCceEE---EEEecccCCcE--EEEecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccc
Q 001042 1063 -TGSSDGLLRFWEN--DDGGIKC---VKNVTIHSSAI--LSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSG 1134 (1178)
Q Consensus 1063 -sgs~Dg~I~iwd~--~~~~~~~---~~~~~~h~~~i--~~is~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~ 1134 (1178)
+.+.++.|..|++ .++.... ...+..+.... .+++++|++.++...++.|..||..++
T Consensus 165 v~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG-------------- 230 (297)
T 3g4e_A 165 YIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG-------------- 230 (297)
T ss_dssp EEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC--------------
T ss_pred EecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc--------------
Confidence 5556788999997 4554321 22222222333 455788988888777888999998733
Q ss_pred eeEeeccCCCcccEEEEEEc-CCCCEEEEEe
Q 001042 1135 WQLYRTPQKTVAVVRCIASD-LERKRICSGG 1164 (1178)
Q Consensus 1135 ~~~~~~~~~h~~~V~~lafs-pdg~~Las~s 1164 (1178)
++......+...+++++|. ||++.|..++
T Consensus 231 -~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 231 -KRLQTVKLPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp -CEEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred -eEEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence 3333334445679999998 8988766554
No 224
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.03 E-value=1.9e-08 Score=126.14 Aligned_cols=188 Identities=13% Similarity=0.146 Sum_probs=127.9
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCc----------e-EEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEe
Q 001042 892 DRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQ----------V-SCVRMLSGERVLTASHDGTVKMWDVRTDTCVATV 960 (1178)
Q Consensus 892 d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~----------V-~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~ 960 (1178)
.+..+++++.++.|..+|..+|+.+..+..+... + ..+.. .++.+++++.|+.|..+|.++|+.+...
T Consensus 69 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 69 VDGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV-WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp ETTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred ECCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE-ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 3667888888899999999999999888644321 1 11222 4678889999999999999999998776
Q ss_pred cCC-C-CCEEEEEEeC---CCCEEEEEe------CCCeEEEEECCCCceEEEEecCC---c-------------------
Q 001042 961 GRC-S-SAVLCMEYDD---STGILAAGG------RDAVANIWDIRAGRQMHKFLGHT---K------------------- 1007 (1178)
Q Consensus 961 ~~~-~-~~I~~l~~sp---~~~~l~sgs------~dg~I~lwD~~~~~~~~~~~~~~---~------------------- 1007 (1178)
... . .....+..+| ++ .+++++ .+|.|..||.++|+.+.++.... .
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 226 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA 226 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred cCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence 542 1 1111111112 34 444543 36899999999999988765210 0
Q ss_pred ---------cEEEEEEc--CCEEEEEeCCCc-------------------EEEEEcCCCeeeeEecc--CC-------Cc
Q 001042 1008 ---------WIRSIRMD--RDTVITGSDDWT-------------------ARMWSISRGTCDAVLAC--HA-------GP 1048 (1178)
Q Consensus 1008 ---------~v~~l~~~--~~~l~sgs~dg~-------------------I~iwd~~~~~~~~~~~~--h~-------~~ 1048 (1178)
.-..++++ .+.++.++.++. |..||.++|+.+..++. |. .+
T Consensus 227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~ 306 (689)
T 1yiq_A 227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQH 306 (689)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCC
Confidence 00135554 468888887764 99999999999887764 22 12
Q ss_pred EEEEEEecCCC---EEEEEeCCCcEEEEECCCCceE
Q 001042 1049 VQCVEYSSSDR---GIITGSSDGLLRFWENDDGGIK 1081 (1178)
Q Consensus 1049 I~~l~~spdg~---~L~sgs~Dg~I~iwd~~~~~~~ 1081 (1178)
+.......+|+ .++.++.+|.++++|..+|+..
T Consensus 307 ~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 342 (689)
T 1yiq_A 307 MILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELL 342 (689)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred cEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEe
Confidence 22223333565 7889999999999999999643
No 225
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.02 E-value=3.4e-09 Score=122.06 Aligned_cols=182 Identities=10% Similarity=-0.019 Sum_probs=134.3
Q ss_pred ceEEEEecCCCCcccccccc-eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceecccccc
Q 001042 770 SWVQSMFSREASSRSHSFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDR 848 (1178)
Q Consensus 770 ~i~~~aFSpdg~~las~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s 848 (1178)
.+..+++|+++.++++|+.+ +++|+++........ ... . .+.. ....+.+ |+.|+|
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~-----~~~--~-~~~~-~~~~lp~-V~~l~f------------- 95 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITS-----DST--P-LTFK-WEKEIPD-VIFVCF------------- 95 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHS-----SSC--C-CCCS-EEEECTT-EEEEEE-------------
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhcc-----ccc--c-ccce-EEeeCCC-eeEEEE-------------
Confidence 57778999999999999988 888998764410000 000 0 0111 2224666 888887
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEE
Q 001042 849 EDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSC 928 (1178)
Q Consensus 849 ~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~ 928 (1178)
|+++|+++ .+|.|++||+... ........|...+.++.+-...+++++.||.+.+||+.++.... +...|+|
T Consensus 96 -d~~~L~v~-~~~~l~v~dv~sl--~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~ 167 (388)
T 1xip_A 96 -HGDQVLVS-TRNALYSLDLEEL--SEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ----LAQNVTS 167 (388)
T ss_dssp -ETTEEEEE-ESSEEEEEESSST--TCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE----EEESEEE
T ss_pred -CCCEEEEE-cCCcEEEEEchhh--hccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcccc----ccCCceE
Confidence 38899998 8899999998632 23345566777777775555559999999999999999887653 4568999
Q ss_pred EEEeCCCeEEEEeCCCeEEEEeCCCCeE--EEEe------c---CCCCCEEEEEEeCCCCEEEEEe
Q 001042 929 VRMLSGERVLTASHDGTVKMWDVRTDTC--VATV------G---RCSSAVLCMEYDDSTGILAAGG 983 (1178)
Q Consensus 929 l~~~~~~~l~sgs~dg~V~iwd~~~~~~--~~~~------~---~~~~~I~~l~~sp~~~~l~sgs 983 (1178)
++|++.. ++.|..||++++|+..+++. ..++ . ++...|.++.|.+++.++++=+
T Consensus 168 v~WSpkG-~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 168 FDVTNSQ-LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEECSSE-EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEEcCCc-eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 9999655 78899999999999988876 5566 2 3678899999999988887543
No 226
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.99 E-value=3e-08 Score=124.14 Aligned_cols=267 Identities=13% Similarity=0.143 Sum_probs=177.0
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEecCCCCc-----------eEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEec
Q 001042 893 RGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQ-----------VSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVG 961 (1178)
Q Consensus 893 ~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~-----------V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~ 961 (1178)
+..+++++.++.|.-+|..+|+.+..+...... ...+++ .++.+++++.|+.|..+|..+|+.+..+.
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~v~v~~~dg~l~alD~~tG~~~W~~~ 155 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL-WKGKVYVGAWDGRLIALDAATGKEVWHQN 155 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE-ECCEEEEEcCCCEEEEEECCCCCEEeeec
Confidence 567777888899999999999999887644221 112333 46788899999999999999999988876
Q ss_pred CC-C----CCEEE-EEEeCCCCEEEEEeC------CCeEEEEECCCCceEEEEecCCcc---------------------
Q 001042 962 RC-S----SAVLC-MEYDDSTGILAAGGR------DAVANIWDIRAGRQMHKFLGHTKW--------------------- 1008 (1178)
Q Consensus 962 ~~-~----~~I~~-l~~sp~~~~l~sgs~------dg~I~lwD~~~~~~~~~~~~~~~~--------------------- 1008 (1178)
.. . ..+.+ ... .+..+++++. +|.|+.+|.++|+.+.++......
T Consensus 156 ~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g 233 (677)
T 1kb0_A 156 TFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSG 233 (677)
T ss_dssp TTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGG
T ss_pred CCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccC
Confidence 54 1 11111 111 2345555553 699999999999998877542211
Q ss_pred -----------EEEEEE--cCCEEEEEeCCC-------------------cEEEEEcCCCeeeeEecc--CC-------C
Q 001042 1009 -----------IRSIRM--DRDTVITGSDDW-------------------TARMWSISRGTCDAVLAC--HA-------G 1047 (1178)
Q Consensus 1009 -----------v~~l~~--~~~~l~sgs~dg-------------------~I~iwd~~~~~~~~~~~~--h~-------~ 1047 (1178)
...+++ +.+.++.++.++ .|..+|.++|+.+..++. |. .
T Consensus 234 ~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~ 313 (677)
T 1kb0_A 234 KWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQ 313 (677)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred ceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCC
Confidence 013455 355777777664 599999999999887763 21 1
Q ss_pred cEEEEEEecCC---CEEEEEeCCCcEEEEECCCCceEEEEEecccC---------C------------------------
Q 001042 1048 PVQCVEYSSSD---RGIITGSSDGLLRFWENDDGGIKCVKNVTIHS---------S------------------------ 1091 (1178)
Q Consensus 1048 ~I~~l~~spdg---~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~---------~------------------------ 1091 (1178)
...-+....+| +.++.++.+|.++++|..+|+......+.... .
T Consensus 314 ~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~ 393 (677)
T 1kb0_A 314 PMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAH 393 (677)
T ss_dssp CCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSS
T ss_pred CcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCccccc
Confidence 22233444477 67899999999999999999643322211000 0
Q ss_pred --cEEEEecCCCEEEEEeCC-------------------------------------------CcEEEEEcCCCcccccc
Q 001042 1092 --AILSINAGDHWLGIGAAD-------------------------------------------NSMSLFHRPQERLGGFS 1126 (1178)
Q Consensus 1092 --~i~~is~dg~~Lasgs~D-------------------------------------------g~I~iwd~~~~~~~~~~ 1126 (1178)
.-.+++|++.++++...+ |.|..||+.+++
T Consensus 394 ~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~----- 468 (677)
T 1kb0_A 394 NWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQK----- 468 (677)
T ss_dssp CSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTE-----
T ss_pred CCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCc-----
Confidence 123567888888776542 567777776332
Q ss_pred CCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 001042 1127 GTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATINI 1178 (1178)
Q Consensus 1127 ~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~tg~ 1178 (1178)
. .|+... ...+....++.++.+++.++.||.+++||..||+
T Consensus 469 ----~--~W~~~~-----~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~ 509 (677)
T 1kb0_A 469 ----A--AWSVEH-----VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGE 509 (677)
T ss_dssp ----E--EEEEEE-----SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred ----E--EeecCC-----CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCc
Confidence 1 233321 1223334466788889999999999999999985
No 227
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.96 E-value=2e-08 Score=126.58 Aligned_cols=238 Identities=8% Similarity=0.054 Sum_probs=152.9
Q ss_pred CCCceEEEEEe-CCCeEEEE-----eCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCC---------
Q 001042 922 HDAQVSCVRML-SGERVLTA-----SHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDA--------- 986 (1178)
Q Consensus 922 h~~~V~~l~~~-~~~~l~sg-----s~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg--------- 986 (1178)
|...+..++|+ ++++++.+ +...+|++||+.+|+.+... ........++|+ ||+.|+.++.+.
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence 45567888999 67767633 22357999999999865431 111112467899 999999988774
Q ss_pred ----eEEEEECCCCce--EEEE--ec-CCccEEEEEEc--CCEEEEE-eC---CCcEEEEEcCCCe-eeeEeccCCCcEE
Q 001042 987 ----VANIWDIRAGRQ--MHKF--LG-HTKWIRSIRMD--RDTVITG-SD---DWTARMWSISRGT-CDAVLACHAGPVQ 1050 (1178)
Q Consensus 987 ----~I~lwD~~~~~~--~~~~--~~-~~~~v~~l~~~--~~~l~sg-s~---dg~I~iwd~~~~~-~~~~~~~h~~~I~ 1050 (1178)
.|++|++.++.. ...+ .. +.....++.++ +++++.. +. +..|+++|+.++. ....+..+.....
T Consensus 205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~ 284 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADV 284 (693)
T ss_dssp CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCE
T ss_pred CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceE
Confidence 399999987653 2222 23 34456777785 4455433 32 3589999998763 4455665666655
Q ss_pred EEEEecCCCEEEEEe-CC---CcEEEEECCCCceEEEEEecccCCcEEEEecCCCEEEEEeCCC---cEEEEEcCCCccc
Q 001042 1051 CVEYSSSDRGIITGS-SD---GLLRFWENDDGGIKCVKNVTIHSSAILSINAGDHWLGIGAADN---SMSLFHRPQERLG 1123 (1178)
Q Consensus 1051 ~l~~spdg~~L~sgs-~D---g~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~Lasgs~Dg---~I~iwd~~~~~~~ 1123 (1178)
.. ++++|..|+..+ .+ +.|..+|+.++.......+..|...+..++++++.|+....++ .|++|++.++
T Consensus 285 ~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~s~~g~~lv~~~~~~g~~~l~~~d~~g~--- 360 (693)
T 3iuj_A 285 SL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVLTVHSGSGYLFAEYMVDATARVEQFDYEGK--- 360 (693)
T ss_dssp EE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEETTEEEEEEEETTEEEEEEECTTSC---
T ss_pred EE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEEEEEEECCEEEEEEEECCeeEEEEEECCCC---
Confidence 55 666776665444 33 6799999988743112233344444448899999887766544 6888887532
Q ss_pred cccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCC----CcEEEEECCCC
Q 001042 1124 GFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRN----GLLRLWEATIN 1177 (1178)
Q Consensus 1124 ~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~D----g~V~IWdv~tg 1177 (1178)
........+.+.+..+.++++++.|+....+ ++|..||+.++
T Consensus 361 ------------~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 361 ------------RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp ------------EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred ------------eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 1111112234567788889998877666544 88999998776
No 228
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.92 E-value=7.5e-08 Score=110.27 Aligned_cols=248 Identities=10% Similarity=0.019 Sum_probs=158.0
Q ss_pred EEecCCCEEEEEe--CCCcEEEEECCCCcEEEEec-------CCCCceEEEEEeCCCeEEEEeC------CCeEEEEeCC
Q 001042 888 AINSDRGKVVSGS--DDQSVLVWDKQTSQLLEELK-------GHDAQVSCVRMLSGERVLTASH------DGTVKMWDVR 952 (1178)
Q Consensus 888 ~~s~d~~~l~sgs--~dg~I~iwd~~t~~~~~~l~-------~h~~~V~~l~~~~~~~l~sgs~------dg~V~iwd~~ 952 (1178)
+++++|+.+++.. .++.++||.+.+++. ..+. .|-..+..+++.+...++.+.. ++.|.+||+.
T Consensus 23 a~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~ 101 (343)
T 2qe8_A 23 TLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTL 101 (343)
T ss_dssp EECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETT
T ss_pred EECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECC
Confidence 4678898888864 234355555545543 3332 2456789999985555555543 5799999999
Q ss_pred CCeEEEEecCC------CCCEEEEEEeCCCCEE-EEEe---CCCeEEEEECCCCceEEEEecCCccE---EEEEEcCCEE
Q 001042 953 TDTCVATVGRC------SSAVLCMEYDDSTGIL-AAGG---RDAVANIWDIRAGRQMHKFLGHTKWI---RSIRMDRDTV 1019 (1178)
Q Consensus 953 ~~~~~~~~~~~------~~~I~~l~~sp~~~~l-~sgs---~dg~I~lwD~~~~~~~~~~~~~~~~v---~~l~~~~~~l 1019 (1178)
+++.+..+... ...+..+++++++..+ ++.. .++.|.+||..+++..+.+.+|.... ..+..++..+
T Consensus 102 tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~ 181 (343)
T 2qe8_A 102 NNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPV 181 (343)
T ss_dssp TTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEEC
T ss_pred CCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEE
Confidence 99877666432 2356899999865555 4444 57899999999888766664432211 2233455566
Q ss_pred EEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCC-----Cce---E---EEEEecc
Q 001042 1020 ITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDD-----GGI---K---CVKNVTI 1088 (1178)
Q Consensus 1020 ~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~-----~~~---~---~~~~~~~ 1088 (1178)
.+.+.+|.+..|. ..+..++|+|+|+.|+.+..++. ++|.+.. +.. . .+... +
T Consensus 182 ~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~-g 245 (343)
T 2qe8_A 182 QIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNLQLTDAELGSKIERY-S 245 (343)
T ss_dssp BEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCTTCCHHHHHTTCEEE-E
T ss_pred EeccCCCceecee--------------cccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCCCCChhhhhcceEec-c
Confidence 6667777765553 24678999999999988877663 4444421 100 0 00111 1
Q ss_pred c--CCcEEEEecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCC
Q 001042 1089 H--SSAILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRN 1166 (1178)
Q Consensus 1089 h--~~~i~~is~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~D 1166 (1178)
+ ...-.+++++|.+.++...++.|.+||..+++. ..+... .+....++++|+++|+++++.+..
T Consensus 246 ~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~-------------~~~~~~-~~~~~p~~va~~~~g~l~v~~~~~ 311 (343)
T 2qe8_A 246 EKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAY-------------KLLVTD-EKLSWTDSFNFGSDGYLYFDCNQL 311 (343)
T ss_dssp ECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEE-------------EEEEEC-GGGSCEEEEEECTTSCEEEEECCG
T ss_pred cCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCE-------------EEEEEC-CceecCCeeEECCCCcEEEEeCcc
Confidence 1 122357789999999999999999999842211 111111 134568999999999988887643
No 229
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.92 E-value=5.4e-07 Score=100.78 Aligned_cols=210 Identities=8% Similarity=0.034 Sum_probs=136.6
Q ss_pred C-CCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceE--EEecCCCEEEEEeCCCcEEEEECCCCcEEEEecC----
Q 001042 849 E-DAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKG---- 921 (1178)
Q Consensus 849 ~-d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~--~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~---- 921 (1178)
+ ++.++++...++.|..||... ... ..+. ....+. +++++|+++++ . ++.|.+||.++++.......
T Consensus 22 ~~~~~l~~~d~~~~~i~~~d~~~--~~~-~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~ 95 (297)
T 3g4e_A 22 EVSNSLLFVDIPAKKVCRWDSFT--KQV-QRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDK 95 (297)
T ss_dssp TTTTEEEEEETTTTEEEEEETTT--CCE-EEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTC
T ss_pred CCCCEEEEEECCCCEEEEEECCC--CcE-EEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCC
Confidence 5 456777777889999999763 222 2221 223444 45789985544 4 56899999988865433222
Q ss_pred CCCceEEEEEeCCCeEEEEe-C-----------CCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEE-EeCCCeE
Q 001042 922 HDAQVSCVRMLSGERVLTAS-H-----------DGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAA-GGRDAVA 988 (1178)
Q Consensus 922 h~~~V~~l~~~~~~~l~sgs-~-----------dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~s-gs~dg~I 988 (1178)
....+.++++.++..++.++ . .+.|..+|.. ++... +.........++|+|+++.++. .+.++.|
T Consensus 96 ~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~~~~~~~pngi~~spdg~~lyv~~~~~~~i 173 (297)
T 3g4e_A 96 KNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-YFDQVDISNGLDWSLDHKIFYYIDSLSYSV 173 (297)
T ss_dssp SSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-EEEEESBEEEEEECTTSCEEEEEEGGGTEE
T ss_pred CCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE-EeeccccccceEEcCCCCEEEEecCCCCcE
Confidence 12357888888433344443 1 2344445543 33322 2233345689999999987754 4557899
Q ss_pred EEEEC--CCCceE-----EEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEe-cCC
Q 001042 989 NIWDI--RAGRQM-----HKFLGHTKWIRSIRMD--RDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYS-SSD 1058 (1178)
Q Consensus 989 ~lwD~--~~~~~~-----~~~~~~~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~s-pdg 1058 (1178)
..||+ .++... ..+..+...+..++++ ++..++...++.|..||..+++.+..+..+...+++++|. |++
T Consensus 174 ~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~ 253 (297)
T 3g4e_A 174 DAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNY 253 (297)
T ss_dssp EEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGG
T ss_pred EEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCC
Confidence 99997 455432 2222334567788885 4466666677889999998899988888777789999998 888
Q ss_pred CEEEEEeC
Q 001042 1059 RGIITGSS 1066 (1178)
Q Consensus 1059 ~~L~sgs~ 1066 (1178)
+.|+.++.
T Consensus 254 ~~L~vt~~ 261 (297)
T 3g4e_A 254 SEMYVTCA 261 (297)
T ss_dssp CEEEEEEB
T ss_pred CEEEEEcC
Confidence 87766554
No 230
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.91 E-value=1.5e-07 Score=117.68 Aligned_cols=266 Identities=13% Similarity=0.128 Sum_probs=172.3
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCceeeEeeccccc----------ce-EEEecCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 001042 851 AGFFISGSTDCLVKIWDPSLRGSELRATLKGHTR----------TV-RAINSDRGKVVSGSDDQSVLVWDKQTSQLLEEL 919 (1178)
Q Consensus 851 ~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~----------~V-~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l 919 (1178)
+..++.++.++.|.-+|..+ .+.+........ .+ ......+..+++++.|+.|..+|..+|+.+..+
T Consensus 66 ~g~vyv~~~~~~v~AlD~~t--G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAAS--GKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTT--CCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCC--ChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 45566666777888888652 222222221111 01 112224678889999999999999999999887
Q ss_pred cCCC----CceEEEEEeCCCeEEEEeC------CCeEEEEeCCCCeEEEEecCCC---C---------------------
Q 001042 920 KGHD----AQVSCVRMLSGERVLTASH------DGTVKMWDVRTDTCVATVGRCS---S--------------------- 965 (1178)
Q Consensus 920 ~~h~----~~V~~l~~~~~~~l~sgs~------dg~V~iwd~~~~~~~~~~~~~~---~--------------------- 965 (1178)
.... ..+.+.-...++.++++.. +|.|..+|.++|+.+..+.... .
T Consensus 144 ~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w 223 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW 223 (668)
T ss_dssp ECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred ccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcccee
Confidence 6421 1111111112455666543 5899999999999988774310 0
Q ss_pred -------CEEEEEEeCCCCEEEEEeCCC-------------------eEEEEECCCCceEEEEecC--C-------ccE-
Q 001042 966 -------AVLCMEYDDSTGILAAGGRDA-------------------VANIWDIRAGRQMHKFLGH--T-------KWI- 1009 (1178)
Q Consensus 966 -------~I~~l~~sp~~~~l~sgs~dg-------------------~I~lwD~~~~~~~~~~~~~--~-------~~v- 1009 (1178)
....+++++++..++.++.++ .|..+|.++|+.+..++.. . .+.
T Consensus 224 ~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~ 303 (668)
T 1kv9_A 224 KLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQIT 303 (668)
T ss_dssp HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEE
T ss_pred eeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcE
Confidence 112478889888898888776 3999999999998887642 2 122
Q ss_pred -EEEEEcCC---EEEEEeCCCcEEEEEcCCCeeeeEeccCC------------CcE------------------------
Q 001042 1010 -RSIRMDRD---TVITGSDDWTARMWSISRGTCDAVLACHA------------GPV------------------------ 1049 (1178)
Q Consensus 1010 -~~l~~~~~---~l~sgs~dg~I~iwd~~~~~~~~~~~~h~------------~~I------------------------ 1049 (1178)
..+.++++ .++.++.+|.++++|..+|+.+....... .++
T Consensus 304 ~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w 383 (668)
T 1kv9_A 304 LAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNW 383 (668)
T ss_dssp EEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCS
T ss_pred EEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCC
Confidence 23445665 68899999999999999998874432111 000
Q ss_pred EEEEEecCCCEEEEEe------------------------------------CCCcEEEEECCCCceEEEEEecccCCc-
Q 001042 1050 QCVEYSSSDRGIITGS------------------------------------SDGLLRFWENDDGGIKCVKNVTIHSSA- 1092 (1178)
Q Consensus 1050 ~~l~~spdg~~L~sgs------------------------------------~Dg~I~iwd~~~~~~~~~~~~~~h~~~- 1092 (1178)
..++++|+...+.... .+|.|..||..+|+. +.....+...
T Consensus 384 ~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~--~W~~~~~~~~~ 461 (668)
T 1kv9_A 384 HSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKA--AWKVPYPTHWN 461 (668)
T ss_dssp SCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEE--EEEEEESSSCC
T ss_pred CcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcE--EEEccCCCCCc
Confidence 1267788766655421 247899999999953 3333322221
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 001042 1093 ILSINAGDHWLGIGAADNSMSLFHRPQE 1120 (1178)
Q Consensus 1093 i~~is~dg~~Lasgs~Dg~I~iwd~~~~ 1120 (1178)
-..+...+.++++|+.|+.++.||..++
T Consensus 462 ~~~~~t~gg~vf~g~~dg~l~a~d~~tG 489 (668)
T 1kv9_A 462 GGTLSTAGNLVFQGTAAGQMHAYSADKG 489 (668)
T ss_dssp CCEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred CceeEeCCCEEEEECCcccchhhhhhcC
Confidence 1345567889999999999999999854
No 231
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.91 E-value=1.9e-07 Score=104.79 Aligned_cols=232 Identities=11% Similarity=0.080 Sum_probs=147.1
Q ss_pred EEEEecCCCCceEEEEEe-CCC-eEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 001042 915 LLEELKGHDAQVSCVRML-SGE-RVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWD 992 (1178)
Q Consensus 915 ~~~~l~~h~~~V~~l~~~-~~~-~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD 992 (1178)
.+..+...........|. +++ .++++..++.|..|+. +++ ...+......+..++++++|+++++...++.|..||
T Consensus 36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~ 113 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSD 113 (305)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEEC
Confidence 344455556667788888 555 5667778899999998 454 344445567789999999999776666668899999
Q ss_pred CCCCceEEEEecC-----CccEEEEEEcC--CEEEE----EeC-------------CCcEEEEEcCCCeeeeEeccCCCc
Q 001042 993 IRAGRQMHKFLGH-----TKWIRSIRMDR--DTVIT----GSD-------------DWTARMWSISRGTCDAVLACHAGP 1048 (1178)
Q Consensus 993 ~~~~~~~~~~~~~-----~~~v~~l~~~~--~~l~s----gs~-------------dg~I~iwd~~~~~~~~~~~~h~~~ 1048 (1178)
.. ++.. .+... ...+.++++++ +..++ |.. .+.|..||..+++..... ....
T Consensus 114 ~~-g~~~-~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~ 189 (305)
T 3dr2_A 114 AD-GQAH-LLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDH 189 (305)
T ss_dssp TT-SCEE-EEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESS
T ss_pred CC-CCEE-EEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCC
Confidence 86 5432 22211 12355677754 45554 322 256778887666654333 3456
Q ss_pred EEEEEEecCCCEEEEEeCC------CcEEEEECCCCceEEEEEec---ccCCcEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 001042 1049 VQCVEYSSSDRGIITGSSD------GLLRFWENDDGGIKCVKNVT---IHSSAILSINAGDHWLGIGAADNSMSLFHRPQ 1119 (1178)
Q Consensus 1049 I~~l~~spdg~~L~sgs~D------g~I~iwd~~~~~~~~~~~~~---~h~~~i~~is~dg~~Lasgs~Dg~I~iwd~~~ 1119 (1178)
.+.++|+|+++.|+.+... +.|..|++..+.......+. .....-..++++|++.+ ++.+ .|.+|+...
T Consensus 190 p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv-~~~~-gv~~~~~~g 267 (305)
T 3dr2_A 190 PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS-SSGT-GVCVFDSDG 267 (305)
T ss_dssp EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE-CCSS-EEEEECTTS
T ss_pred CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE-ecCC-cEEEECCCC
Confidence 7899999999988777665 68999998765321111111 11111246678888444 4444 488998742
Q ss_pred CccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEE
Q 001042 1120 ERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRL 1171 (1178)
Q Consensus 1120 ~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~I 1171 (1178)
. .......+. .+.+++|+++++.|..++.++..++
T Consensus 268 ~----------------~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 268 Q----------------LLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp C----------------EEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred C----------------EEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence 1 111121222 4788999999999888887654443
No 232
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.88 E-value=8.1e-10 Score=128.10 Aligned_cols=253 Identities=12% Similarity=0.038 Sum_probs=140.0
Q ss_pred CCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceE--EEecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCc-e
Q 001042 850 DAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQ-V 926 (1178)
Q Consensus 850 d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~--~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~-V 926 (1178)
++..+++++.||.|+.||.. +++....+.. ..+. .+..++..+++++.||.|+.||.++|+.+..+..+... +
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~--tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~ 83 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKR--TGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV 83 (369)
T ss_dssp CTTEEEEEETTSEEEEEETT--TCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHH
T ss_pred eCCEEEEEcCCCEEEEEECC--CCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccc
Confidence 57899999999999999976 3444444443 2332 23456777888889999999999999887776544211 1
Q ss_pred E-EEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecC
Q 001042 927 S-CVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGH 1005 (1178)
Q Consensus 927 ~-~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~ 1005 (1178)
. ......++.+++|+.||.++.||..+|+.+..+..+. ...++|++..+++++.|+.|+.||.++|+.+..+...
T Consensus 84 ~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~ 159 (369)
T 2hz6_A 84 QASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYF 159 (369)
T ss_dssp TTCSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEE
T ss_pred ccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecc
Confidence 1 1111245678888899999999999999887775443 2345668888999999999999999999877665422
Q ss_pred CccEEEEEEcC-----CEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEE-EEEecCCCEE----EEEeCCCcEEEEEC
Q 001042 1006 TKWIRSIRMDR-----DTVITGSDDWTARMWSISRGTCDAVLACHAGPVQC-VEYSSSDRGI----ITGSSDGLLRFWEN 1075 (1178)
Q Consensus 1006 ~~~v~~l~~~~-----~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~-l~~spdg~~L----~sgs~Dg~I~iwd~ 1075 (1178)
. ....++++ +.+++++.||.++.||.++|+.+..... .+++.. ..++++|... +.+ ++.++.+|.
T Consensus 160 ~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~pv~~~~~~~~dg~~~v~~~~~~--~~~l~~ld~ 234 (369)
T 2hz6_A 160 D--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY-ASPVVAFYVWQREGLRKVMHINVA--VETLRYLTF 234 (369)
T ss_dssp E--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC-SSCEEEEEECTTSSCEEECCEEEE--HHHHHHHHH
T ss_pred c--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC-CCceEEEEEecCCceEeccceeec--ccceeeeeh
Confidence 1 12233333 5788899999999999999998887763 344443 3445555432 112 334555555
Q ss_pred CCCc----eEEEEEecccCCcEEEEecCCCEEEEEeCCCcEEEEEcC
Q 001042 1076 DDGG----IKCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRP 1118 (1178)
Q Consensus 1076 ~~~~----~~~~~~~~~h~~~i~~is~dg~~Lasgs~Dg~I~iwd~~ 1118 (1178)
.+|+ ........+ .+.+....+..+++++.||.++.++..
T Consensus 235 ~tG~~~~~~~W~~~~~~---~~~sp~~~~g~lyv~~~~G~l~al~~~ 278 (369)
T 2hz6_A 235 MSGEVGRITKWKYPFPK---ETEAKSKLTPTLYVGKYSTSLYASPSM 278 (369)
T ss_dssp HHHHHHHHHTSCCCCCC---HHHHHHHSEEEECBEECSSCEECCEEE
T ss_pred hcCCcccceeeeeccCc---cccccccccceEEEecccCCEEecCcc
Confidence 4442 110000000 010111234577788888999888875
No 233
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.86 E-value=6.2e-10 Score=129.10 Aligned_cols=182 Identities=15% Similarity=0.145 Sum_probs=109.5
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCC-CEE-
Q 001042 892 DRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSS-AVL- 968 (1178)
Q Consensus 892 d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~-~I~- 968 (1178)
++..+++++.||.|+.||..+|+.+..+.. +.+.+..+. ++..+++++.||.|+.||..+|+.+..+..+.. .+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 678999999999999999999999988876 444444333 555777778999999999999987666543211 000
Q ss_pred EEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEcCCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCc
Q 001042 969 CMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAGP 1048 (1178)
Q Consensus 969 ~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~ 1048 (1178)
+..+. ++..+++|+.++.++.||.++|+.+..+..+.. + ..+.+++.+++++.|+.|+.||.++|+.+..+..+.
T Consensus 86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~-~-~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~-- 160 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA-D-SLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD-- 160 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE--
T ss_pred CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc-c-cccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--
Confidence 00111 345677888899999999999998877755432 1 122266789999999999999999998877665321
Q ss_pred EEEEEEecCC---CEEEEEeCCCcEEEEECCCCce
Q 001042 1049 VQCVEYSSSD---RGIITGSSDGLLRFWENDDGGI 1080 (1178)
Q Consensus 1049 I~~l~~spdg---~~L~sgs~Dg~I~iwd~~~~~~ 1080 (1178)
....+++.+. ..+++++.||.|..||..+|+.
T Consensus 161 ~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~ 195 (369)
T 2hz6_A 161 YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV 195 (369)
T ss_dssp ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE
T ss_pred ccCccccCCccccceEEEECCCCEEEEEECCCCcE
Confidence 1223334332 5677888999999999999954
No 234
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.83 E-value=2.4e-06 Score=96.92 Aligned_cols=209 Identities=9% Similarity=-0.008 Sum_probs=134.3
Q ss_pred CC-CCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEE--EecCCCEEEEEeCCCcEEEEECCCCcEEEEecC----
Q 001042 849 ED-AGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLLEELKG---- 921 (1178)
Q Consensus 849 ~d-~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~---- 921 (1178)
++ +.+++++..++.|..||.. +.... .+. ....+.+ ++++|+++++. .+ .|.+||..+++.......
T Consensus 58 ~~~~~l~~~d~~~~~i~~~d~~--~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~ 131 (326)
T 2ghs_A 58 PASGTAWWFNILERELHELHLA--SGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDL 131 (326)
T ss_dssp TTTTEEEEEEGGGTEEEEEETT--TTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTC
T ss_pred CCCCEEEEEECCCCEEEEEECC--CCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCC
Confidence 65 5566777778999999976 22222 222 2234554 57888776654 44 499999988876433221
Q ss_pred CCCceEEEEEeCCCeEEEEeC-------CCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEE-eCCCeEEEEEC
Q 001042 922 HDAQVSCVRMLSGERVLTASH-------DGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAG-GRDAVANIWDI 993 (1178)
Q Consensus 922 h~~~V~~l~~~~~~~l~sgs~-------dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sg-s~dg~I~lwD~ 993 (1178)
....+.++++.++..++.++. .+.|..+| +++..... ........++|+++++.++.+ +.++.|.+||.
T Consensus 132 ~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~-~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~ 208 (326)
T 2ghs_A 132 PGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLF-ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPL 208 (326)
T ss_dssp TTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEE-EEESSEEEEEECTTSCEEEEEETTTCEEEEEEB
T ss_pred CCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEee-CCCcccCCeEEcCCCCEEEEEECCCCEEEEEEc
Confidence 124578888884333444442 25666666 55543322 223456789999999877655 45789999998
Q ss_pred C--CC-ce-----EEEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEe-cCCCEEE
Q 001042 994 R--AG-RQ-----MHKFLGHTKWIRSIRMD--RDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYS-SSDRGII 1062 (1178)
Q Consensus 994 ~--~~-~~-----~~~~~~~~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~s-pdg~~L~ 1062 (1178)
. ++ +. ...+......+..++++ ++..++...++.|..||. +++.+..+..+...+++++|+ ++++.|+
T Consensus 209 ~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~ 287 (326)
T 2ghs_A 209 DARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLL 287 (326)
T ss_dssp CTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEE
T ss_pred ccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEE
Confidence 6 55 32 22222234556778885 445555556788999998 677777777667789999998 8888776
Q ss_pred EEeCC
Q 001042 1063 TGSSD 1067 (1178)
Q Consensus 1063 sgs~D 1067 (1178)
.++..
T Consensus 288 vt~~~ 292 (326)
T 2ghs_A 288 VTSAR 292 (326)
T ss_dssp EEEBC
T ss_pred EEecC
Confidence 55543
No 235
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.83 E-value=4e-07 Score=102.18 Aligned_cols=229 Identities=10% Similarity=0.037 Sum_probs=147.7
Q ss_pred ceEEecccccceEEEEeeeccceeccccccCCCC-EEEEEeCCCcEEEEcCCCCCceeeEeecccccceE--EEecCCCE
Q 001042 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAG-FFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGK 895 (1178)
Q Consensus 819 ~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~-~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~--~~s~d~~~ 895 (1178)
.+..+..+........|+ ++++ +++++..++.|..|+.. +. ...+..+...+. +++++|+.
T Consensus 36 ~~~~l~~~~~~~egp~~~------------~~g~~l~~~d~~~~~i~~~~~~--g~--~~~~~~~~~~~~gl~~d~dG~l 99 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWW------------EAQRTLVWSDLVGRRVLGWRED--GT--VDVLLDATAFTNGNAVDAQQRL 99 (305)
T ss_dssp CCEEEECCCSSEEEEEEE------------GGGTEEEEEETTTTEEEEEETT--SC--EEEEEESCSCEEEEEECTTSCE
T ss_pred ceEEEecCCcCccCCeEe------------CCCCEEEEEECCCCEEEEEeCC--CC--EEEEeCCCCccceeeECCCCCE
Confidence 344555555566778887 7787 67777788999999864 22 233333344444 45788986
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEecCC----CCceEEEEEe-CCCeEEE----EeC-------------CCeEEEEeCCC
Q 001042 896 VVSGSDDQSVLVWDKQTSQLLEELKGH----DAQVSCVRML-SGERVLT----ASH-------------DGTVKMWDVRT 953 (1178)
Q Consensus 896 l~sgs~dg~I~iwd~~t~~~~~~l~~h----~~~V~~l~~~-~~~~l~s----gs~-------------dg~V~iwd~~~ 953 (1178)
+++...++.|.+|+.+ ++........ ...+.++++. ++...++ |.. .+.|..||..+
T Consensus 100 ~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~ 178 (305)
T 3dr2_A 100 VHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG 178 (305)
T ss_dssp EEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS
T ss_pred EEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCC
Confidence 6666666889999986 6543222111 1346678888 5555554 332 35788888877
Q ss_pred CeEEEEecCCCCCEEEEEEeCCCCEEEEEeCC------CeEEEEECCCCceE--EEE-ecCCccEEEEEEcCC-EEEEEe
Q 001042 954 DTCVATVGRCSSAVLCMEYDDSTGILAAGGRD------AVANIWDIRAGRQM--HKF-LGHTKWIRSIRMDRD-TVITGS 1023 (1178)
Q Consensus 954 ~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~d------g~I~lwD~~~~~~~--~~~-~~~~~~v~~l~~~~~-~l~sgs 1023 (1178)
++..... .......++|+|+++.|+++... +.|.+||+..+... ..+ .........++++.+ .+.+++
T Consensus 179 g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~ 256 (305)
T 3dr2_A 179 SPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS 256 (305)
T ss_dssp CCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC
T ss_pred CcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec
Confidence 7654433 33456889999999988877665 78999998765411 111 112233445666433 355555
Q ss_pred CCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCc
Q 001042 1024 DDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGL 1069 (1178)
Q Consensus 1024 ~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~ 1069 (1178)
.+ .|.+||. +++.+..+..+. .+.+++|+++++.|+.++.++.
T Consensus 257 ~~-gv~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 257 GT-GVCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp SS-EEEEECT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEE
T ss_pred CC-cEEEECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeE
Confidence 44 4999997 577777776544 5889999999998888877653
No 236
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.82 E-value=2.1e-06 Score=97.36 Aligned_cols=213 Identities=10% Similarity=-0.008 Sum_probs=138.1
Q ss_pred EEecCCC-EEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCC---
Q 001042 888 AINSDRG-KVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRC--- 963 (1178)
Q Consensus 888 ~~s~d~~-~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~--- 963 (1178)
.++++++ .+++...++.|..||..+++.. .+. ....+.++++.++..++.++.+ .|.+||..+++........
T Consensus 55 ~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~~~~~~~~~~~ 131 (326)
T 2ghs_A 55 TFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELESDL 131 (326)
T ss_dssp EEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSSTTC
T ss_pred eEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEECC-CEEEEECCCCcEEEEeeCCCCC
Confidence 4678754 5566667889999999887653 333 3467899999854555555654 4999999888764433211
Q ss_pred -CCCEEEEEEeCCCCEEEEEeC------CCeEEEEECCCCceEEEEecCCccEEEEEEcC--CEEEE-EeCCCcEEEEEc
Q 001042 964 -SSAVLCMEYDDSTGILAAGGR------DAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR--DTVIT-GSDDWTARMWSI 1033 (1178)
Q Consensus 964 -~~~I~~l~~sp~~~~l~sgs~------dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~--~~l~s-gs~dg~I~iwd~ 1033 (1178)
...+.+++++++|+++++... .+.|..+| +++.. .+.........++|++ +.++. .+.++.|.+||+
T Consensus 132 ~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~ 208 (326)
T 2ghs_A 132 PGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPL 208 (326)
T ss_dssp TTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEB
T ss_pred CCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEc
Confidence 235889999999997665432 25666676 45433 3333334567888854 45544 456789999998
Q ss_pred C--CC-ee-----eeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEE--e-cCCCE
Q 001042 1034 S--RG-TC-----DAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSI--N-AGDHW 1102 (1178)
Q Consensus 1034 ~--~~-~~-----~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s-~dg~~ 1102 (1178)
. ++ +. ...+........+++++++|++.++...++.|..||. ++ ..+..+..+...+.++ + ++++.
T Consensus 209 ~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g--~~~~~i~~~~~~~~~~af~g~d~~~ 285 (326)
T 2ghs_A 209 DARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DG--NHIARYEVPGKQTTCPAFIGPDASR 285 (326)
T ss_dssp CTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TC--CEEEEEECSCSBEEEEEEESTTSCE
T ss_pred ccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CC--CEEEEEECCCCCcEEEEEecCCCCE
Confidence 6 55 32 2223334456788999999987777767788999998 45 3344454555455554 4 67776
Q ss_pred EEEEeCC
Q 001042 1103 LGIGAAD 1109 (1178)
Q Consensus 1103 Lasgs~D 1109 (1178)
|++++..
T Consensus 286 L~vt~~~ 292 (326)
T 2ghs_A 286 LLVTSAR 292 (326)
T ss_dssp EEEEEBC
T ss_pred EEEEecC
Confidence 6555443
No 237
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.80 E-value=1.8e-06 Score=105.75 Aligned_cols=228 Identities=14% Similarity=0.141 Sum_probs=150.9
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEecCCCC----ceEEEEEeCCCeEEEEeC------CCeEEEEeCCCCeEEEEec
Q 001042 892 DRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDA----QVSCVRMLSGERVLTASH------DGTVKMWDVRTDTCVATVG 961 (1178)
Q Consensus 892 d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~----~V~~l~~~~~~~l~sgs~------dg~V~iwd~~~~~~~~~~~ 961 (1178)
++..+++++.|+.+..+|..+|+.+........ .+.+--...++.+++++. +|.|..+|..+|+.+..+.
T Consensus 114 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 114 GAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred ECCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence 467888899999999999999999887653221 222111112456666665 7999999999999887764
Q ss_pred CCCCC--------------------------------------EEEEEEeCCCCEEEEEeCC----------------Ce
Q 001042 962 RCSSA--------------------------------------VLCMEYDDSTGILAAGGRD----------------AV 987 (1178)
Q Consensus 962 ~~~~~--------------------------------------I~~l~~sp~~~~l~sgs~d----------------g~ 987 (1178)
..... ...++++++...++.++.+ +.
T Consensus 194 ~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~ 273 (571)
T 2ad6_A 194 ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMT 273 (571)
T ss_dssp SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTE
T ss_pred cCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEE
Confidence 32110 0236677777777777642 36
Q ss_pred EEEEECCCCceEEEEecCC----------ccEE-EEEEcCC---EEEEEeCCCcEEEEEcCCCeeeeEeccCC-------
Q 001042 988 ANIWDIRAGRQMHKFLGHT----------KWIR-SIRMDRD---TVITGSDDWTARMWSISRGTCDAVLACHA------- 1046 (1178)
Q Consensus 988 I~lwD~~~~~~~~~~~~~~----------~~v~-~l~~~~~---~l~sgs~dg~I~iwd~~~~~~~~~~~~h~------- 1046 (1178)
|..+|.++|+.+..++... .++. ....+++ .++.++.+|.++++|..+|+.+.......
T Consensus 274 v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~ 353 (571)
T 2ad6_A 274 IWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKK 353 (571)
T ss_dssp EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred EEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccccc
Confidence 9999999999988775321 1221 2223453 57788899999999999998877654211
Q ss_pred ------CcE--------------------------EEEEEecCCCEEEEEe-----------------------------
Q 001042 1047 ------GPV--------------------------QCVEYSSSDRGIITGS----------------------------- 1065 (1178)
Q Consensus 1047 ------~~I--------------------------~~l~~spdg~~L~sgs----------------------------- 1065 (1178)
.++ ..++++|+...++..+
T Consensus 354 ~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 433 (571)
T 2ad6_A 354 VDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYP 433 (571)
T ss_dssp ECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred ccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceecc
Confidence 111 2357888877776653
Q ss_pred --------CCCcEEEEECCCCceEEEEEecccCCcEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 001042 1066 --------SDGLLRFWENDDGGIKCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRPQE 1120 (1178)
Q Consensus 1066 --------~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~Lasgs~Dg~I~iwd~~~~ 1120 (1178)
.+|.|..||..+++..-......... -..+...+..+++++.||.++.||..++
T Consensus 434 ~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~-~~~~~t~gg~v~~g~~dg~l~a~D~~tG 495 (571)
T 2ad6_A 434 GPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAW-GGTLYTKGGLVWYATLDGYLKALDNKDG 495 (571)
T ss_dssp CTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCC-SBCEEETTTEEEEECTTSEEEEEETTTC
T ss_pred CccccCCCCCCeEEEEECCCCCEEEEecCCCCcc-ceeEEECCCEEEEEcCCCeEEEEECCCC
Confidence 34789999999985433333221111 1122345677888999999999999844
No 238
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.78 E-value=2.2e-05 Score=100.36 Aligned_cols=358 Identities=11% Similarity=0.084 Sum_probs=209.0
Q ss_pred ceEEEEecC--CCCcccccccc-eeecccccccCCCCCCCCCCCcCCcccccceEEec------ccccceEEEEeeeccc
Q 001042 770 SWVQSMFSR--EASSRSHSFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIR------GHAGAITALHCVTKRE 840 (1178)
Q Consensus 770 ~i~~~aFSp--dg~~las~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------gH~~~V~~l~fs~~~~ 840 (1178)
.|.++.... +|...+..... +..+|..++.. ..+. -....|.++...
T Consensus 116 ~i~~i~~d~~~~g~lwi~t~~~gl~~~~~~~~~~--------------------~~~~~~~~~~l~~~~i~~i~~d---- 171 (781)
T 3v9f_A 116 DVTHITSSVQAGKGLWVCTYYRGIEYLDIATGKF--------------------THYNKSTVPALPSEQTWTATEA---- 171 (781)
T ss_dssp CEEEEEECSSTTSEEEEEESSSCEEEEETTTTEE--------------------EEESTTTCTTCSCCCEEEEEEE----
T ss_pred cceEEEecCccCCCEEEEECCCCeeEEECCCCeE--------------------EeeccCcccCCCccceEEEEEC----
Confidence 466677777 77655544233 88888665431 1110 112457777653
Q ss_pred eeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeec-------ccccceEEEecC-CCEEEEEeCCCcEEEEECCC
Q 001042 841 VWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLK-------GHTRTVRAINSD-RGKVVSGSDDQSVLVWDKQT 912 (1178)
Q Consensus 841 ~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~-------~h~~~V~~~s~d-~~~l~sgs~dg~I~iwd~~t 912 (1178)
.+| .|..|+.++-|..||.. ......... -....|.++..| ...|..|+.+ -+.+||..+
T Consensus 172 --------~~g-~lwigt~~~Gl~~~~~~--~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~~-Gl~~~d~~~ 239 (781)
T 3v9f_A 172 --------EDG-KLYIGHVEGGLSILSLN--DKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTSK-GLALFNANT 239 (781)
T ss_dssp --------ETT-EEEEEETTTEEEEEETT--TTEEEEECC--------CCSSEEEEEECTTCCEEEEETT-EEEEEETTT
T ss_pred --------CCC-CEEEEecCCCeEEEcCC--CCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEeCC-cHheECCCC
Confidence 344 45556666558888865 222211110 012457776433 2345556665 688999877
Q ss_pred CcEEEEec-------CCCCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEec--------------CCCCCEEEEE
Q 001042 913 SQLLEELK-------GHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVG--------------RCSSAVLCME 971 (1178)
Q Consensus 913 ~~~~~~l~-------~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~--------------~~~~~I~~l~ 971 (1178)
++...... .....|.++....+..+..|+..+-|.++|..++....... .....|.++.
T Consensus 240 ~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~ 319 (781)
T 3v9f_A 240 ETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIF 319 (781)
T ss_dssp TEEEC-----------CCCCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEE
T ss_pred CcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEE
Confidence 65432211 12456888887777788888886778899988765432211 1245799999
Q ss_pred EeCCCCEEEEEeCCCeEEEEECCCCceEEEEe---------cCCccEEEEEEcC-CEEEEEeCCCcEEEEEcCCCeeeeE
Q 001042 972 YDDSTGILAAGGRDAVANIWDIRAGRQMHKFL---------GHTKWIRSIRMDR-DTVITGSDDWTARMWSISRGTCDAV 1041 (1178)
Q Consensus 972 ~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~---------~~~~~v~~l~~~~-~~l~sgs~dg~I~iwd~~~~~~~~~ 1041 (1178)
.+++|. |.+|+.++-|..++..++....-.. .....|.++..++ ..+..|+.++-+..||..++.....
T Consensus 320 ~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~ 398 (781)
T 3v9f_A 320 QDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYN 398 (781)
T ss_dssp ECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC
T ss_pred EeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEc
Confidence 998886 5567777778999987654322111 1235688998865 4788888777899999765533221
Q ss_pred e---ccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEEecC-CCEEEEEeCCCcEEEEEc
Q 001042 1042 L---ACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSINAG-DHWLGIGAADNSMSLFHR 1117 (1178)
Q Consensus 1042 ~---~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is~d-g~~Lasgs~Dg~I~iwd~ 1117 (1178)
. ......|.++...++|. |..|+.++-+..+|..+++.............|.++..+ ...|..|+. +.+..||.
T Consensus 399 ~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~ 476 (781)
T 3v9f_A 399 KENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDL 476 (781)
T ss_dssp -----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEES
T ss_pred cCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeC
Confidence 1 12346789999888776 555776667889988776322211001234567777443 234556666 56888997
Q ss_pred CCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001042 1118 PQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATIN 1177 (1178)
Q Consensus 1118 ~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~tg 1177 (1178)
.+++...+.... ........|.+++..++|.+.+.. .++-+..||..++
T Consensus 477 ~~~~~~~~~~~~----------~~~~~~~~i~~i~~d~~g~lWigt-~~~Gl~~~~~~~~ 525 (781)
T 3v9f_A 477 ASKKVIHHYDTS----------NSQLLENFVRSIAQDSEGRFWIGT-FGGGVGIYTPDMQ 525 (781)
T ss_dssp SSSSCCEEECTT----------TSSCSCSCEEEEEECTTCCEEEEE-SSSCEEEECTTCC
T ss_pred CCCeEEecccCc----------ccccccceeEEEEEcCCCCEEEEE-cCCCEEEEeCCCC
Confidence 754322111000 001123569999999999876644 4334666776543
No 239
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.76 E-value=2.6e-07 Score=105.78 Aligned_cols=255 Identities=9% Similarity=-0.023 Sum_probs=156.5
Q ss_pred cceEEEEeeeccceeccccccCCCCEEEEEe--CCCcEEEEcCCCCCceeeEee-------cccccceEE--EecCCCEE
Q 001042 828 GAITALHCVTKREVWDLVGDREDAGFFISGS--TDCLVKIWDPSLRGSELRATL-------KGHTRTVRA--INSDRGKV 896 (1178)
Q Consensus 828 ~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs--~Dg~I~iWd~~~~~~~~~~~l-------~~h~~~V~~--~s~d~~~l 896 (1178)
.....++++ ++|+++++.. .++.++||.+. .+ .+. .+ .+|...+.. ++++++.+
T Consensus 17 ~~p~~va~~------------~~g~~~v~~~~~~~~~~~l~~~~-~g-~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~ 81 (343)
T 2qe8_A 17 LAPGNITLT------------PDGRLFLSLHQFYQPEMQVAELT-QD-GLI-PFPPQSGNAIITFDTVLGIKSDGNGIVW 81 (343)
T ss_dssp SCEEEEEEC------------TTSCEEEEECGGGCCSCSEEEEE-TT-EEE-ESCCCCSSCCCCCSCEEEEEECSSSEEE
T ss_pred CCcceEEEC------------CCCCEEEEeCCCCCCceEEEEEC-CC-Cee-cCCCcccCcccceeEeeEEEEcCCCcEE
Confidence 678888887 8999998864 23446666654 22 222 11 123345554 46777655
Q ss_pred EEEeC-----CCcEEEEECCCCcEEEEecCC------CCceEEEEEe-CCCeE-EEEe---CCCeEEEEeCCCCeEEEEe
Q 001042 897 VSGSD-----DQSVLVWDKQTSQLLEELKGH------DAQVSCVRML-SGERV-LTAS---HDGTVKMWDVRTDTCVATV 960 (1178)
Q Consensus 897 ~sgs~-----dg~I~iwd~~t~~~~~~l~~h------~~~V~~l~~~-~~~~l-~sgs---~dg~V~iwd~~~~~~~~~~ 960 (1178)
++-.. ++.|.+||+.+++.+..+... ...+..+++. ++..+ ++.. .++.|.+||..+++....+
T Consensus 82 v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~ 161 (343)
T 2qe8_A 82 MLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVL 161 (343)
T ss_dssp EEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEEC
T ss_pred EEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEe
Confidence 55433 578999999999877766532 2356888888 44454 4444 5789999999988877766
Q ss_pred cCCCCCEE-EEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEc--CCEEEEEeCCC-cEEEEEcC--
Q 001042 961 GRCSSAVL-CMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMD--RDTVITGSDDW-TARMWSIS-- 1034 (1178)
Q Consensus 961 ~~~~~~I~-~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sgs~dg-~I~iwd~~-- 1034 (1178)
..|..... ...+..+|..+.+.+.+|.+..|. ..+..++++ ++.++.+..++ .+..++..
T Consensus 162 ~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~ 227 (343)
T 2qe8_A 162 QGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADL 227 (343)
T ss_dssp TTCTTTSCCSCCCEETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHH
T ss_pred cCCCcccccccceeECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHh
Confidence 54321100 133445676676777777776553 135667775 44777777665 45444432
Q ss_pred -CCe-----eee--EeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcE--EEEecCCCEEE
Q 001042 1035 -RGT-----CDA--VLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAI--LSINAGDHWLG 1104 (1178)
Q Consensus 1035 -~~~-----~~~--~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i--~~is~dg~~La 1104 (1178)
.+. ... ...++.+....++++++|+++++...++.|.+||..+++...+.... +.... .++.+++.+++
T Consensus 228 ~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~-~~~~p~~va~~~~g~l~v 306 (343)
T 2qe8_A 228 SNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE-KLSWTDSFNFGSDGYLYF 306 (343)
T ss_dssp TCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-GGSCEEEEEECTTSCEEE
T ss_pred cCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-ceecCCeeEECCCCcEEE
Confidence 111 000 11234445678999999999999889999999998566433333222 22223 34466777776
Q ss_pred EEeCCCcE
Q 001042 1105 IGAADNSM 1112 (1178)
Q Consensus 1105 sgs~Dg~I 1112 (1178)
+.+..+.+
T Consensus 307 ~~~~~~~~ 314 (343)
T 2qe8_A 307 DCNQLHHS 314 (343)
T ss_dssp EECCGGGS
T ss_pred EeCccccc
Confidence 66554444
No 240
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.74 E-value=3e-06 Score=103.69 Aligned_cols=223 Identities=13% Similarity=0.118 Sum_probs=147.6
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEecCCCC----ceEE-EEEeCCCeEEEEe------CCCeEEEEeCCCCeEEEEecCCC
Q 001042 896 VVSGSDDQSVLVWDKQTSQLLEELKGHDA----QVSC-VRMLSGERVLTAS------HDGTVKMWDVRTDTCVATVGRCS 964 (1178)
Q Consensus 896 l~sgs~dg~I~iwd~~t~~~~~~l~~h~~----~V~~-l~~~~~~~l~sgs------~dg~V~iwd~~~~~~~~~~~~~~ 964 (1178)
++.++.|+.+..+|..+|+.+........ .+.+ -... ++.+++++ .+|.|+.+|.++|+.+..+....
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~ 202 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATG 202 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSS
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCC
Confidence 88899999999999999999887653321 2221 1112 44566655 38999999999999987764322
Q ss_pred CC-------------------------------------E-EEEEEeCCCCEEEEEeCC----------------CeEEE
Q 001042 965 SA-------------------------------------V-LCMEYDDSTGILAAGGRD----------------AVANI 990 (1178)
Q Consensus 965 ~~-------------------------------------I-~~l~~sp~~~~l~sgs~d----------------g~I~l 990 (1178)
.. + ..++++++...++.++.+ +.|..
T Consensus 203 ~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~A 282 (599)
T 1w6s_A 203 PDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFG 282 (599)
T ss_dssp CHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEE
T ss_pred CccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEE
Confidence 11 0 145677888888888765 38999
Q ss_pred EECCCCceEEEEecCCc----------cEE-EEE-EcC---CEEEEEeCCCcEEEEEcCCCeeeeEeccCC---------
Q 001042 991 WDIRAGRQMHKFLGHTK----------WIR-SIR-MDR---DTVITGSDDWTARMWSISRGTCDAVLACHA--------- 1046 (1178)
Q Consensus 991 wD~~~~~~~~~~~~~~~----------~v~-~l~-~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~--------- 1046 (1178)
+|.++|+.+..++.... ++. .+. .++ ..++.++.+|.++++|..+|+.+.......
T Consensus 283 ld~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~ 362 (599)
T 1w6s_A 283 RDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVD 362 (599)
T ss_dssp EETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEEC
T ss_pred EeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccc
Confidence 99999999887764321 122 221 245 367778899999999999998876654211
Q ss_pred ----CcE--------------------------EEEEEecCCCEEEEEe-------------------------------
Q 001042 1047 ----GPV--------------------------QCVEYSSSDRGIITGS------------------------------- 1065 (1178)
Q Consensus 1047 ----~~I--------------------------~~l~~spdg~~L~sgs------------------------------- 1065 (1178)
.++ ..++++|+..++++..
T Consensus 363 ~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p 442 (599)
T 1w6s_A 363 LKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGP 442 (599)
T ss_dssp TTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECT
T ss_pred cCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCC
Confidence 111 2356777666554421
Q ss_pred --------CCCcEEEEECCCCceEEEEEecccCCcEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 001042 1066 --------SDGLLRFWENDDGGIKCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRPQE 1120 (1178)
Q Consensus 1066 --------~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~Lasgs~Dg~I~iwd~~~~ 1120 (1178)
.+|.+..||+.+++..-....... ..--.+...+..++.|+.|+.++.||..++
T Consensus 443 ~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~-~~~g~~~tagg~vf~gt~dg~l~A~D~~tG 504 (599)
T 1w6s_A 443 KGDRQNYEGLGQIKAYNAITGDYKWEKMERFA-VWGGTMATAGDLVFYGTLDGYLKARDSDTG 504 (599)
T ss_dssp TSBTTTTBCCEEEEEECTTTCCEEEEEEESSC-CCSBCEEETTTEEEEECTTSEEEEEETTTC
T ss_pred cCCcccCCCcCeEEEEECCCCCEEeEecCCCC-ccCcceEecCCEEEEECCCCeEEEEECCCC
Confidence 347899999999954433332211 111123456778888999999999999844
No 241
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.74 E-value=0.00012 Score=93.42 Aligned_cols=320 Identities=11% Similarity=0.075 Sum_probs=196.9
Q ss_pred cceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEee-c---c---cccceEEEecC---CCEEE
Q 001042 828 GAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATL-K---G---HTRTVRAINSD---RGKVV 897 (1178)
Q Consensus 828 ~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l-~---~---h~~~V~~~s~d---~~~l~ 897 (1178)
..|.+|... .+|..|..|+.++-+..||... ....... . . ....|.++..+ ...+.
T Consensus 66 n~I~~i~~d------------~~g~~lWigt~~~Gl~~~d~~~--~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~lw 131 (781)
T 3v9f_A 66 NELNEVYTD------------PVQPVIWIATQRAGLNAYNYET--QSFSVYQYNPEDPQSLITNDVTHITSSVQAGKGLW 131 (781)
T ss_dssp SCEEEEEEC------------SSSSEEEEEESSSCEEEEETTT--TEEEEECCCTTCSSSCSCSCEEEEEECSSTTSEEE
T ss_pred cccceEEEc------------CCCCEEEEEeCCCCcceECCCC--CeEEeeccccCCCCCcccCcceEEEecCccCCCEE
Confidence 357787653 5566366777774699999652 2222110 1 0 12357777544 35677
Q ss_pred EEeCCCcEEEEECCCCcEEEEec-----CCCCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEec-------CCCC
Q 001042 898 SGSDDQSVLVWDKQTSQLLEELK-----GHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVG-------RCSS 965 (1178)
Q Consensus 898 sgs~dg~I~iwd~~t~~~~~~l~-----~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~-------~~~~ 965 (1178)
.++.++.+..||..+++...... .....|.++....++.+..|+.++.+..||..+++...... ....
T Consensus 132 i~t~~~gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~ 211 (781)
T 3v9f_A 132 VCTYYRGIEYLDIATGKFTHYNKSTVPALPSEQTWTATEAEDGKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGN 211 (781)
T ss_dssp EEESSSCEEEEETTTTEEEEESTTTCTTCSCCCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEECC--------CCS
T ss_pred EEECCCCeeEEECCCCeEEeeccCcccCCCccceEEEEECCCCCEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCC
Confidence 77755668899988766543211 12345788777666778888888678999988876543211 1235
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEe-------cCCccEEEEEEcC-CEEEEEeCCCcEEEEEcCCCe
Q 001042 966 AVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFL-------GHTKWIRSIRMDR-DTVITGSDDWTARMWSISRGT 1037 (1178)
Q Consensus 966 ~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~-------~~~~~v~~l~~~~-~~l~sgs~dg~I~iwd~~~~~ 1037 (1178)
.|.++..+++|.+.+ |+.+ -+.+||..+++...... .....|.++..+. ..+..|+..+-|.++|..++.
T Consensus 212 ~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~ 289 (781)
T 3v9f_A 212 DVRCIYKDTNGNIWI-GTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATELNGIMILDLQQNQ 289 (781)
T ss_dssp SEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEESSSCEEEEETTCC-
T ss_pred ceeEEEEcCCCCEEE-EeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCCCCeEEECCCCCe
Confidence 689999988887554 5555 68999987765432211 1245688888854 478888886778999987665
Q ss_pred eeeEec--------------cCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEe-------cccCCcEEEE
Q 001042 1038 CDAVLA--------------CHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNV-------TIHSSAILSI 1096 (1178)
Q Consensus 1038 ~~~~~~--------------~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~-------~~h~~~i~~i 1096 (1178)
...... -....|.++..+++|. |..|+.++-|..++..++........ ......|.++
T Consensus 290 ~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i 368 (781)
T 3v9f_A 290 FLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSV 368 (781)
T ss_dssp --------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEE
T ss_pred eeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEE
Confidence 322111 1245799999998886 66777677799998877643333211 1123557777
Q ss_pred ecCC-CEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001042 1097 NAGD-HWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEAT 1175 (1178)
Q Consensus 1097 s~dg-~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~ 1175 (1178)
..+. ..|..|+.++.|..|+..++....+.. ........|.+++..++|.+.+ |+.++-+..++..
T Consensus 369 ~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~------------~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~ 435 (781)
T 3v9f_A 369 CDDGQGKLWIGTDGGGINVFENGKRVAIYNKE------------NRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTR 435 (781)
T ss_dssp EECTTSCEEEEEBSSCEEEEETTEEEEECC-----------------CCCSBEEEEEECTTSCEEE-EETTEEEEEECSS
T ss_pred EEcCCCCEEEEeCCCcEEEEECCCCeEEEccC------------CCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCC
Confidence 5432 456677777779999976432211100 0012345699999988888665 6666678888776
Q ss_pred CC
Q 001042 1176 IN 1177 (1178)
Q Consensus 1176 tg 1177 (1178)
++
T Consensus 436 ~~ 437 (781)
T 3v9f_A 436 LK 437 (781)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 242
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.73 E-value=5.1e-06 Score=95.76 Aligned_cols=227 Identities=8% Similarity=0.075 Sum_probs=145.0
Q ss_pred CCe-EEEEeCCCeEEEEeCCCC----eEEEEec-------CCCCCEEEEEEeCCCCEEEEEeCC------CeEEEEECCC
Q 001042 934 GER-VLTASHDGTVKMWDVRTD----TCVATVG-------RCSSAVLCMEYDDSTGILAAGGRD------AVANIWDIRA 995 (1178)
Q Consensus 934 ~~~-l~sgs~dg~V~iwd~~~~----~~~~~~~-------~~~~~I~~l~~sp~~~~l~sgs~d------g~I~lwD~~~ 995 (1178)
.++ ++.+..+++|.++|+.+. +...++. .....-..+...|+| .++++..+ |.+.++|..+
T Consensus 95 r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T 173 (462)
T 2ece_A 95 RRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYS 173 (462)
T ss_dssp SCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTT
T ss_pred CCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCC
Confidence 444 445667899999999766 6666663 112245678889999 66666555 7899999999
Q ss_pred CceEEEEecCCcc---EEEEEE--cCCEEEEEe-------------------CCCcEEEEEcCCCeeeeEeccC-C-CcE
Q 001042 996 GRQMHKFLGHTKW---IRSIRM--DRDTVITGS-------------------DDWTARMWSISRGTCDAVLACH-A-GPV 1049 (1178)
Q Consensus 996 ~~~~~~~~~~~~~---v~~l~~--~~~~l~sgs-------------------~dg~I~iwd~~~~~~~~~~~~h-~-~~I 1049 (1178)
++.+.++...... -..+.| +++.+++.. .+.+|.+||+.+++.+.++... . ...
T Consensus 174 ~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P 253 (462)
T 2ece_A 174 FEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMA 253 (462)
T ss_dssp CCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEE
T ss_pred CeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCcc
Confidence 9999988633222 234555 455677764 3689999999999888877642 1 234
Q ss_pred EEEEE--ecCCCEEEEEe------CCCcEEEEECCCCceEEEEEe--cc------------------cCCcEEEEecCCC
Q 001042 1050 QCVEY--SSSDRGIITGS------SDGLLRFWENDDGGIKCVKNV--TI------------------HSSAILSINAGDH 1101 (1178)
Q Consensus 1050 ~~l~~--spdg~~L~sgs------~Dg~I~iwd~~~~~~~~~~~~--~~------------------h~~~i~~is~dg~ 1101 (1178)
..+.| +|+++++.+++ .+++|.+|..+.+.+...+.+ .. ....-..+|+||+
T Consensus 254 ~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGr 333 (462)
T 2ece_A 254 LELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDK 333 (462)
T ss_dssp EEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSC
T ss_pred ceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCC
Confidence 55656 99999987776 466888887776654444432 11 1122245799999
Q ss_pred EEEEEeC-CCcEEEEEcCCC---ccccccCCCCCccceeEeeccCCC--cccEEEEEEcCCCCEEEEEe
Q 001042 1102 WLGIGAA-DNSMSLFHRPQE---RLGGFSGTGSKMSGWQLYRTPQKT--VAVVRCIASDLERKRICSGG 1164 (1178)
Q Consensus 1102 ~Lasgs~-Dg~I~iwd~~~~---~~~~~~~~g~~~~~~~~~~~~~~h--~~~V~~lafspdg~~Las~s 1164 (1178)
+|.++.. .+.|.+||+... ++......|..+. +.. ...+. .+.-..++++|||++|+++.
T Consensus 334 fLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~--~~~-~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 334 FLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFH--RAD-HPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTT--CBC-CTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeec--ccc-ccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 9988766 689999998521 1111111110000 000 00000 11246789999999999988
No 243
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.73 E-value=3.9e-07 Score=104.55 Aligned_cols=253 Identities=10% Similarity=-0.028 Sum_probs=164.0
Q ss_pred ceeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceeccccccCCCCEEEEEe----------
Q 001042 789 RVRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGS---------- 858 (1178)
Q Consensus 789 dI~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs---------- 858 (1178)
.|.+.|.++++ .+.++.....+ .++++ ||+++++++.
T Consensus 47 ~vsvID~~t~~-------------------v~~~i~vG~~P--~i~~s------------pDg~~lyVan~~~~r~~~G~ 93 (368)
T 1mda_H 47 ENWVSCAGCGV-------------------TLGHSLGAFLS--LAVAG------------HSGSDFALASTSFARSAKGK 93 (368)
T ss_dssp EEEEEETTTTE-------------------EEEEEEECTTC--EEEEC------------TTSSCEEEEEEEETTTTSSS
T ss_pred eEEEEECCCCe-------------------EEEEEeCCCCC--ceEEC------------CCCCEEEEEcccccccccCC
Confidence 46688888777 56666554456 68887 8999888886
Q ss_pred CCCcEEEEcCCCCCceeeEeecc---------cccceEEEecCCCEEEEEeC--CCcEEE--EECCCCcEEEEecCCCCc
Q 001042 859 TDCLVKIWDPSLRGSELRATLKG---------HTRTVRAINSDRGKVVSGSD--DQSVLV--WDKQTSQLLEELKGHDAQ 925 (1178)
Q Consensus 859 ~Dg~I~iWd~~~~~~~~~~~l~~---------h~~~V~~~s~d~~~l~sgs~--dg~I~i--wd~~t~~~~~~l~~h~~~ 925 (1178)
.+++|.+||.. ..+....+.. ....-..++|||++++++.. +..+.+ +|..+ +..+.... .
T Consensus 94 ~~~~VsviD~~--T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~-~ 167 (368)
T 1mda_H 94 RTDYVEVFDPV--TFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS-C 167 (368)
T ss_dssp EEEEEEEECTT--TCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS-C
T ss_pred CCCEEEEEECC--CCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC-c
Confidence 36889999976 4455555532 23345578999999998874 467888 99877 44553211 1
Q ss_pred eEEEEEeCCCeEEEEeCCCeEEEEeCCC-----CeEEEE----ecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Q 001042 926 VSCVRMLSGERVLTASHDGTVKMWDVRT-----DTCVAT----VGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAG 996 (1178)
Q Consensus 926 V~~l~~~~~~~l~sgs~dg~V~iwd~~~-----~~~~~~----~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~ 996 (1178)
..+.......+++.+.||.+.+.|..+ ++.... +.....+. . ++++..++..+. +.+.+.|..+.
T Consensus 168 -~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~ 241 (368)
T 1mda_H 168 -FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAA 241 (368)
T ss_dssp -CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSS
T ss_pred -eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCC
Confidence 112222445566777889988889876 432211 11112233 3 666676666666 99999998754
Q ss_pred c--eEEEEec------------CCccEEEEEEcCCEEEEEeC---------CCcEEEEEcCCCeeeeEeccCCCcEEEEE
Q 001042 997 R--QMHKFLG------------HTKWIRSIRMDRDTVITGSD---------DWTARMWSISRGTCDAVLACHAGPVQCVE 1053 (1178)
Q Consensus 997 ~--~~~~~~~------------~~~~v~~l~~~~~~l~sgs~---------dg~I~iwd~~~~~~~~~~~~h~~~I~~l~ 1053 (1178)
. .+..+.. .......+..+++.++.+.. ++.+.++|+.+++.+..+.... ...+++
T Consensus 242 ~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~ 320 (368)
T 1mda_H 242 GATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAII 320 (368)
T ss_dssp CCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEE
T ss_pred cceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEE
Confidence 3 2222211 01111233445666665432 2356699999999888876433 688999
Q ss_pred EecCCCE-EEEEe-CCCcEEEEECCCCceEEEEEeccc
Q 001042 1054 YSSSDRG-IITGS-SDGLLRFWENDDGGIKCVKNVTIH 1089 (1178)
Q Consensus 1054 ~spdg~~-L~sgs-~Dg~I~iwd~~~~~~~~~~~~~~h 1089 (1178)
|+|||++ +++.. .++.|.++|+.++ +.+..+..+
T Consensus 321 ~s~Dg~~l~va~~~~~~~VsVID~~t~--kvv~~I~vg 356 (368)
T 1mda_H 321 AAQDGASDNYANSAGTEVLDIYDAASD--QDQSSVELD 356 (368)
T ss_dssp ECCSSSCEEEEEETTTTEEEEEESSSC--EEEEECCCC
T ss_pred ECCCCCEEEEEccCCCCeEEEEECCCC--cEEEEEECC
Confidence 9999984 56666 5999999999998 666666543
No 244
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.64 E-value=1.4e-06 Score=108.94 Aligned_cols=188 Identities=14% Similarity=0.197 Sum_probs=127.1
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEecCCCCc----------e-EEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEec
Q 001042 893 RGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQ----------V-SCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVG 961 (1178)
Q Consensus 893 ~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~----------V-~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~ 961 (1178)
+..+++++.++.|.-+|..+|+.+..+...... + ..+.+ .++.+++++.|+.|..+|..+|+.+....
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~~~dg~l~alD~~tG~~~W~~~ 144 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL-WGDKVYVGTLDGRLIALDAKTGKAIWSQQ 144 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE-EBTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE-ECCEEEEEcCCCEEEEEECCCCCEeeeec
Confidence 567778888899999999999999887643221 1 11222 35678889999999999999999987765
Q ss_pred CCCC-CEEEEEEeC--CCCEEEEEeC------CCeEEEEECCCCceEEEEecCC---c----------------------
Q 001042 962 RCSS-AVLCMEYDD--STGILAAGGR------DAVANIWDIRAGRQMHKFLGHT---K---------------------- 1007 (1178)
Q Consensus 962 ~~~~-~I~~l~~sp--~~~~l~sgs~------dg~I~lwD~~~~~~~~~~~~~~---~---------------------- 1007 (1178)
.... ....+..+| .+..++++.. +|.|..+|.++|+.+.++.... .
T Consensus 145 ~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~ 224 (668)
T 1kv9_A 145 TTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWK 224 (668)
T ss_dssp CSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHH
T ss_pred cCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceee
Confidence 4211 000000111 1334555543 5899999999999988775311 0
Q ss_pred ------cEEEEEEc--CCEEEEEeCCC-------------------cEEEEEcCCCeeeeEecc--CC-------CcEEE
Q 001042 1008 ------WIRSIRMD--RDTVITGSDDW-------------------TARMWSISRGTCDAVLAC--HA-------GPVQC 1051 (1178)
Q Consensus 1008 ------~v~~l~~~--~~~l~sgs~dg-------------------~I~iwd~~~~~~~~~~~~--h~-------~~I~~ 1051 (1178)
....++++ .+.++.++.++ .|..+|.++|+.+..++. |. .+...
T Consensus 225 ~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~ 304 (668)
T 1kv9_A 225 LGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITL 304 (668)
T ss_dssp HCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEE
T ss_pred eCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEE
Confidence 00134554 45788887766 399999999999888764 22 23333
Q ss_pred EEEecCCC---EEEEEeCCCcEEEEECCCCceE
Q 001042 1052 VEYSSSDR---GIITGSSDGLLRFWENDDGGIK 1081 (1178)
Q Consensus 1052 l~~spdg~---~L~sgs~Dg~I~iwd~~~~~~~ 1081 (1178)
..+..+|+ .++.++.+|.+.++|..+|+..
T Consensus 305 ~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 337 (668)
T 1kv9_A 305 AELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI 337 (668)
T ss_dssp EEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred EEeccCCcEEEEEEEECCCCEEEEEECCCCCEe
Confidence 33444665 6888999999999999999643
No 245
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.60 E-value=1.5e-05 Score=97.70 Aligned_cols=228 Identities=15% Similarity=0.121 Sum_probs=147.9
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEecCCCC----ceE-EEEEeCC----C-eEEEEeC------CCeEEEEeCCCCe
Q 001042 892 DRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDA----QVS-CVRMLSG----E-RVLTASH------DGTVKMWDVRTDT 955 (1178)
Q Consensus 892 d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~----~V~-~l~~~~~----~-~l~sgs~------dg~V~iwd~~~~~ 955 (1178)
.+..++.++.|+.+.-+|..+|+.+........ .+. .-...++ . .+++++. +|.|..+|..+|+
T Consensus 116 ~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~ 195 (582)
T 1flg_A 116 YGDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGE 195 (582)
T ss_dssp ETTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCC
T ss_pred ECCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCC
Confidence 467888899999999999999999887654321 111 1111222 2 5666553 7999999999999
Q ss_pred EEEEecCCCCCE-----------------------------------------EEEEEeCCCCEEEEEeC----------
Q 001042 956 CVATVGRCSSAV-----------------------------------------LCMEYDDSTGILAAGGR---------- 984 (1178)
Q Consensus 956 ~~~~~~~~~~~I-----------------------------------------~~l~~sp~~~~l~sgs~---------- 984 (1178)
.+.........+ ..++++++...++.++.
T Consensus 196 ~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r 275 (582)
T 1flg_A 196 EIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWAR 275 (582)
T ss_dssp EEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGG
T ss_pred EEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCccc
Confidence 887653321100 13567777778877763
Q ss_pred ----------C----CeEEEEECCCCceEEEEec--CC--------ccEEE-EE-EcCC---EEEEEeCCCcEEEEEcCC
Q 001042 985 ----------D----AVANIWDIRAGRQMHKFLG--HT--------KWIRS-IR-MDRD---TVITGSDDWTARMWSISR 1035 (1178)
Q Consensus 985 ----------d----g~I~lwD~~~~~~~~~~~~--~~--------~~v~~-l~-~~~~---~l~sgs~dg~I~iwd~~~ 1035 (1178)
| +.|..+|.++|+.+..++. |. .++.. .. .+++ .++.++.+|.++++|..+
T Consensus 276 ~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~t 355 (582)
T 1flg_A 276 TAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSN 355 (582)
T ss_dssp SCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTT
T ss_pred ccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCC
Confidence 2 5899999999999888753 21 12221 11 2453 688899999999999999
Q ss_pred CeeeeEeccCC-------------CcE--------------------------------EEEEEecCCCEEEEEe-----
Q 001042 1036 GTCDAVLACHA-------------GPV--------------------------------QCVEYSSSDRGIITGS----- 1065 (1178)
Q Consensus 1036 ~~~~~~~~~h~-------------~~I--------------------------------~~l~~spdg~~L~sgs----- 1065 (1178)
|+.+....... .++ ..++++|+...+++..
T Consensus 356 G~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~ 435 (582)
T 1flg_A 356 GKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKE 435 (582)
T ss_dssp CCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEE
T ss_pred CCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcce
Confidence 98876654321 000 1345666655554432
Q ss_pred ----------------------------CCCcEEEEECCCCceEEEEEecccCCcEEEEecCCCEEEEEeCCCcEEEEEc
Q 001042 1066 ----------------------------SDGLLRFWENDDGGIKCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHR 1117 (1178)
Q Consensus 1066 ----------------------------~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~Lasgs~Dg~I~iwd~ 1117 (1178)
.+|.|..||+.+|+..-........ .-..+...+.+++.|+.||.++.||.
T Consensus 436 ~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~-~~g~~~tagglvf~g~~dg~l~A~D~ 514 (582)
T 1flg_A 436 DYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPL-WAGVLATAGNLVFTGTGDGYFKAFDA 514 (582)
T ss_dssp EEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCC-CSCCEEETTTEEEEECTTSEEEEEET
T ss_pred eeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCC-cccceEeCCCEEEEECCCCcEEEEEC
Confidence 2578999999999544333322111 11123345778888999999999999
Q ss_pred CCC
Q 001042 1118 PQE 1120 (1178)
Q Consensus 1118 ~~~ 1120 (1178)
.++
T Consensus 515 ~tG 517 (582)
T 1flg_A 515 KSG 517 (582)
T ss_dssp TTC
T ss_pred CCC
Confidence 844
No 246
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.54 E-value=1.9e-05 Score=96.63 Aligned_cols=186 Identities=12% Similarity=0.132 Sum_probs=121.9
Q ss_pred CCEEEEEeC-CCcEEEEEC-CCCcEEEEecCCCCc----------e-EEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEE
Q 001042 893 RGKVVSGSD-DQSVLVWDK-QTSQLLEELKGHDAQ----------V-SCVRMLSGERVLTASHDGTVKMWDVRTDTCVAT 959 (1178)
Q Consensus 893 ~~~l~sgs~-dg~I~iwd~-~t~~~~~~l~~h~~~----------V-~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~ 959 (1178)
+..+++++. ++.|.-+|. .+|+.+..+...... + ..+.. .++.+++++.|+.+..+|..+|+.+..
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~~~dg~l~alD~~tG~~~W~ 140 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY-GAGQIVKKQANGHLLALDAKTGKINWE 140 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE-ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE-ECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence 556677777 889999999 899998877533210 0 11222 466788889999999999999998877
Q ss_pred ecCCCC----CEEE-EEEeCCCCEEEEEeC------CCeEEEEECCCCceEEEEecCCcc--------------------
Q 001042 960 VGRCSS----AVLC-MEYDDSTGILAAGGR------DAVANIWDIRAGRQMHKFLGHTKW-------------------- 1008 (1178)
Q Consensus 960 ~~~~~~----~I~~-l~~sp~~~~l~sgs~------dg~I~lwD~~~~~~~~~~~~~~~~-------------------- 1008 (1178)
...... .+.+ ... .+..+++++. +|.|..+|.++|+.+.++......
T Consensus 141 ~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~ 218 (571)
T 2ad6_A 141 VEVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFG 218 (571)
T ss_dssp EECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSS
T ss_pred ecCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccc
Confidence 643220 1111 111 1345666654 799999999999998876542211
Q ss_pred -----------------E-EEEEEcC--CEEEEEeCC----------------CcEEEEEcCCCeeeeEecc--CC----
Q 001042 1009 -----------------I-RSIRMDR--DTVITGSDD----------------WTARMWSISRGTCDAVLAC--HA---- 1046 (1178)
Q Consensus 1009 -----------------v-~~l~~~~--~~l~sgs~d----------------g~I~iwd~~~~~~~~~~~~--h~---- 1046 (1178)
+ ..+++++ +.+..++.+ +.|..+|.++|+.+..++. |.
T Consensus 219 ~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~ 298 (571)
T 2ad6_A 219 LGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDF 298 (571)
T ss_dssp HHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCC
T ss_pred cccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCccccc
Confidence 0 1234443 466666532 3599999999998887753 21
Q ss_pred ----CcEEEEEEecCCC---EEEEEeCCCcEEEEECCCCceEE
Q 001042 1047 ----GPVQCVEYSSSDR---GIITGSSDGLLRFWENDDGGIKC 1082 (1178)
Q Consensus 1047 ----~~I~~l~~spdg~---~L~sgs~Dg~I~iwd~~~~~~~~ 1082 (1178)
.++. +....+|+ .++.++.+|.+.++|..+|+...
T Consensus 299 ~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w 340 (571)
T 2ad6_A 299 AGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIV 340 (571)
T ss_dssp CCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred ccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEe
Confidence 1221 22234674 57788899999999999996443
No 247
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.53 E-value=0.00011 Score=80.42 Aligned_cols=217 Identities=6% Similarity=-0.069 Sum_probs=136.8
Q ss_pred cceEEEEeeeccceeccccccCCCC-EEEEEeCCCcEEEEcCCCCCceeeEeecccccceE--EEecCCCEEEEE-eCCC
Q 001042 828 GAITALHCVTKREVWDLVGDREDAG-FFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKVVSG-SDDQ 903 (1178)
Q Consensus 828 ~~V~~l~fs~~~~~~~~~~~s~d~~-~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~--~~s~d~~~l~sg-s~dg 903 (1178)
....+++|. ++++ ++++-..++.|..++.+ +............... ++++++..++.+ ...+
T Consensus 36 ~~~~gi~~d------------~~~~~ly~~d~~~~~I~~~~~~--g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~ 101 (267)
T 1npe_A 36 KVIIGLAFD------------CVDKVVYWTDISEPSIGRASLH--GGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLD 101 (267)
T ss_dssp EEEEEEEEE------------TTTTEEEEEETTTTEEEEEESS--SCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTT
T ss_pred CcEEEEEEe------------cCCCEEEEEECCCCEEEEEecC--CCCcEEEEECCCCCccEEEEEecCCeEEEEECCCC
Confidence 456788886 6544 55555567899999976 3222222222112222 567766655544 5567
Q ss_pred cEEEEECCCCcEEEEecCCCCceEEEEEeC-CCeEEEEeC---CCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEE
Q 001042 904 SVLVWDKQTSQLLEELKGHDAQVSCVRMLS-GERVLTASH---DGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGIL 979 (1178)
Q Consensus 904 ~I~iwd~~t~~~~~~l~~h~~~V~~l~~~~-~~~l~sgs~---dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l 979 (1178)
.|.+++.+.................+++.+ +..++.+.. .+.|..++.............-.....+++++++..|
T Consensus 102 ~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~l 181 (267)
T 1npe_A 102 RIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQL 181 (267)
T ss_dssp EEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEE
T ss_pred EEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEE
Confidence 899999875433222322235678889884 666666554 3688888876433222222333567899999987766
Q ss_pred EEEe-CCCeEEEEECCCCceEEEEecCCccEEEEEEcCCEEEEEe-CCCcEEEEEcCCCeeeeEeccCC-CcEEEEEEec
Q 001042 980 AAGG-RDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGS-DDWTARMWSISRGTCDAVLACHA-GPVQCVEYSS 1056 (1178)
Q Consensus 980 ~sgs-~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~h~-~~I~~l~~sp 1056 (1178)
+.+. ..+.|..+|........... .......++.+++.++.+. .++.|..+|..+++.+..+.... ....++++.|
T Consensus 182 yv~d~~~~~I~~~~~~g~~~~~~~~-~~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~ 260 (267)
T 1npe_A 182 CWVDAGTHRAECLNPAQPGRRKVLE-GLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIAL 260 (267)
T ss_dssp EEEETTTTEEEEEETTEEEEEEEEE-CCCSEEEEEEETTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred EEEECCCCEEEEEecCCCceEEEec-CCCCceEEEEeCCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecC
Confidence 5554 56799999987654333332 2334567778777666665 56899999999999888876433 2467788888
Q ss_pred CCC
Q 001042 1057 SDR 1059 (1178)
Q Consensus 1057 dg~ 1059 (1178)
++.
T Consensus 261 ~~~ 263 (267)
T 1npe_A 261 SQC 263 (267)
T ss_dssp SCC
T ss_pred ccC
Confidence 764
No 248
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.52 E-value=3.8e-05 Score=93.97 Aligned_cols=188 Identities=12% Similarity=0.113 Sum_probs=124.1
Q ss_pred CCEEEEEeC-CCcEEEEEC-CCCcEEEEecCCCCc-----------eEEEEEe-CCCe----EEEEeCCCeEEEEeCCCC
Q 001042 893 RGKVVSGSD-DQSVLVWDK-QTSQLLEELKGHDAQ-----------VSCVRML-SGER----VLTASHDGTVKMWDVRTD 954 (1178)
Q Consensus 893 ~~~l~sgs~-dg~I~iwd~-~t~~~~~~l~~h~~~-----------V~~l~~~-~~~~----l~sgs~dg~V~iwd~~~~ 954 (1178)
+..+++++. ++.|.-+|. .+|+.+..+...... ...+++. .+.. ++.++.|+.+..+|..+|
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 566777777 889999999 899998887643221 1234442 3444 888999999999999999
Q ss_pred eEEEEecCCCC----CEEE-EEEeCCCCEEEEEe------CCCeEEEEECCCCceEEEEecCCcc---------------
Q 001042 955 TCVATVGRCSS----AVLC-MEYDDSTGILAAGG------RDAVANIWDIRAGRQMHKFLGHTKW--------------- 1008 (1178)
Q Consensus 955 ~~~~~~~~~~~----~I~~-l~~sp~~~~l~sgs------~dg~I~lwD~~~~~~~~~~~~~~~~--------------- 1008 (1178)
+.+........ .+.+ ..+. ++ .+++++ .+|.|+.+|.++|+.+.++......
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~ 219 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH 219 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred CEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence 98877643220 1111 1111 33 455555 3799999999999998876543211
Q ss_pred ----------------------E-EEEEE--cCCEEEEEeCC----------------CcEEEEEcCCCeeeeEeccCC-
Q 001042 1009 ----------------------I-RSIRM--DRDTVITGSDD----------------WTARMWSISRGTCDAVLACHA- 1046 (1178)
Q Consensus 1009 ----------------------v-~~l~~--~~~~l~sgs~d----------------g~I~iwd~~~~~~~~~~~~h~- 1046 (1178)
+ ...++ ..+.++.++.+ +.|..+|.++|+.+..++...
T Consensus 220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~ 299 (599)
T 1w6s_A 220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPH 299 (599)
T ss_dssp GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTT
T ss_pred ccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCC
Confidence 0 02233 34577777665 379999999999988776421
Q ss_pred ---------CcEEEEEEe-cCC---CEEEEEeCCCcEEEEECCCCceEEE
Q 001042 1047 ---------GPVQCVEYS-SSD---RGIITGSSDGLLRFWENDDGGIKCV 1083 (1178)
Q Consensus 1047 ---------~~I~~l~~s-pdg---~~L~sgs~Dg~I~iwd~~~~~~~~~ 1083 (1178)
.++. +... .+| +.++.++.+|.+.++|..+|+....
T Consensus 300 d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~ 348 (599)
T 1w6s_A 300 DEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSA 348 (599)
T ss_dssp CSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeec
Confidence 1121 2222 567 4677788999999999999964433
No 249
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.49 E-value=3.7e-05 Score=88.70 Aligned_cols=217 Identities=12% Similarity=0.157 Sum_probs=145.7
Q ss_pred cCCCEEEE-EeCCCcEEEEECCCC----cEEEEec-------CCCCceEEEEEeCCCeEEEEeCC------CeEEEEeCC
Q 001042 891 SDRGKVVS-GSDDQSVLVWDKQTS----QLLEELK-------GHDAQVSCVRMLSGERVLTASHD------GTVKMWDVR 952 (1178)
Q Consensus 891 ~d~~~l~s-gs~dg~I~iwd~~t~----~~~~~l~-------~h~~~V~~l~~~~~~~l~sgs~d------g~V~iwd~~ 952 (1178)
.++++|+. +..++.|.++|+.+. +..+++. .....-..+...++..++++..+ |.|.++|..
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~ 172 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHY 172 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEECC
Confidence 66777665 556789999999765 6666663 11113344555544466665555 789999999
Q ss_pred CCeEEEEecCCCC---CEEEEEEeCCCCEEEEEe-------------------CCCeEEEEECCCCceEEEEecC--Ccc
Q 001042 953 TDTCVATVGRCSS---AVLCMEYDDSTGILAAGG-------------------RDAVANIWDIRAGRQMHKFLGH--TKW 1008 (1178)
Q Consensus 953 ~~~~~~~~~~~~~---~I~~l~~sp~~~~l~sgs-------------------~dg~I~lwD~~~~~~~~~~~~~--~~~ 1008 (1178)
+++.+.++..... .-..+.|+|+++.+++.. .+..|.+||+.+++.+.++... ...
T Consensus 173 T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~ 252 (462)
T 2ece_A 173 SFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRM 252 (462)
T ss_dssp TCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEE
T ss_pred CCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCc
Confidence 9999998863322 234588899999888874 3689999999998888777653 234
Q ss_pred EEEEEE--cC--CEEEEEe------CCCcEEEEEcCCCee--eeEe--ccC----------------CCcEEEEEEecCC
Q 001042 1009 IRSIRM--DR--DTVITGS------DDWTARMWSISRGTC--DAVL--ACH----------------AGPVQCVEYSSSD 1058 (1178)
Q Consensus 1009 v~~l~~--~~--~~l~sgs------~dg~I~iwd~~~~~~--~~~~--~~h----------------~~~I~~l~~spdg 1058 (1178)
...+.+ ++ +++.+++ .+++|.+|....++. .+.+ ... ......+.+|+||
T Consensus 253 P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DG 332 (462)
T 2ece_A 253 ALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDD 332 (462)
T ss_dssp EEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTS
T ss_pred cceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCC
Confidence 455555 54 4555554 567888776655422 1111 110 2347889999999
Q ss_pred CEEEEEe-CCCcEEEEECC-CCceEEEEEeccc----------------CCcEEEEecCCCEEEEEe
Q 001042 1059 RGIITGS-SDGLLRFWEND-DGGIKCVKNVTIH----------------SSAILSINAGDHWLGIGA 1107 (1178)
Q Consensus 1059 ~~L~sgs-~Dg~I~iwd~~-~~~~~~~~~~~~h----------------~~~i~~is~dg~~Lasgs 1107 (1178)
++|.++. ..+.|.++|+. .+..+.+..+... ...-..+++||++|+++.
T Consensus 333 rfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 333 KFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 9988776 47899999986 3344555554432 235578899999999987
No 250
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.49 E-value=2e-05 Score=85.51 Aligned_cols=189 Identities=12% Similarity=-0.027 Sum_probs=133.1
Q ss_pred EEecCCCEEEEEeC--CCcEEEEECCCCcEEEEecCCC-CceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCCC
Q 001042 888 AINSDRGKVVSGSD--DQSVLVWDKQTSQLLEELKGHD-AQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCS 964 (1178)
Q Consensus 888 ~~s~d~~~l~sgs~--dg~I~iwd~~t~~~~~~l~~h~-~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~ 964 (1178)
.+++++...++.+. ++.|.++|..+++.+..+.-.. .....+++.++...++.-.++.+.++|..+.+.+.++....
T Consensus 27 ~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~ 106 (266)
T 2iwa_A 27 VYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQM 106 (266)
T ss_dssp EECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECCS
T ss_pred EEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECCC
Confidence 45777644444443 5899999999999998875322 23345666555555555578999999999999998885331
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCC--c---cEEEEEEcCCEEEEEe-CCCcEEEEEcCCCee
Q 001042 965 SAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHT--K---WIRSIRMDRDTVITGS-DDWTARMWSISRGTC 1038 (1178)
Q Consensus 965 ~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~--~---~v~~l~~~~~~l~sgs-~dg~I~iwd~~~~~~ 1038 (1178)
.. ...+++||+.++++..++.|.++|..+.+.+..+.-.. . .++.+.+.+..+.+.. .++.|.+.|..+++.
T Consensus 107 ~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~~~~~~V~vID~~tg~V 184 (266)
T 2iwa_A 107 KD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANIWQTDCIARISAKDGTL 184 (266)
T ss_dssp SS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEEEEETTTCCE
T ss_pred CC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEecCCCCeEEEEECCCCcE
Confidence 11 23355678878887788999999999998887765322 1 3566666545555554 578999999999999
Q ss_pred eeEeccC-------------CCcEEEEEEecCCCEE-EEEeCCCcEEEEECCCC
Q 001042 1039 DAVLACH-------------AGPVQCVEYSSSDRGI-ITGSSDGLLRFWENDDG 1078 (1178)
Q Consensus 1039 ~~~~~~h-------------~~~I~~l~~spdg~~L-~sgs~Dg~I~iwd~~~~ 1078 (1178)
+..+... ....++++|+|+++.+ +++...+++...++...
T Consensus 185 ~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 185 LGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 8887631 1356899999998765 55557788888776543
No 251
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.47 E-value=7.8e-06 Score=97.51 Aligned_cols=276 Identities=7% Similarity=-0.014 Sum_probs=171.4
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEecC---------------------------------CCC-ce-------EEEEEe--
Q 001042 896 VVSGSDDQSVLVWDKQTSQLLEELKG---------------------------------HDA-QV-------SCVRML-- 932 (1178)
Q Consensus 896 l~sgs~dg~I~iwd~~t~~~~~~l~~---------------------------------h~~-~V-------~~l~~~-- 932 (1178)
+.||+..|.++|+-+.+++.++.+.- +.. .+ ..+.+.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 66788889999998888877765521 010 11 234443
Q ss_pred --CCCeEEEEe-CCCeEEEEeCCCCeEEEEecCC-CCCEEEEEE-e-CCCCEEEEEe------------------CCCeE
Q 001042 933 --SGERVLTAS-HDGTVKMWDVRTDTCVATVGRC-SSAVLCMEY-D-DSTGILAAGG------------------RDAVA 988 (1178)
Q Consensus 933 --~~~~l~sgs-~dg~V~iwd~~~~~~~~~~~~~-~~~I~~l~~-s-p~~~~l~sgs------------------~dg~I 988 (1178)
++.++++.. .++.|.+.|+.+.++...+.-. ......+++ + |+++++++++ .++.+
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 345555544 5678999999999988855432 356888888 5 8999999885 24579
Q ss_pred EEEECCCCceEEEEecCCc-cEEEEEEcCCEEEEEeCCC--------------------------------------cEE
Q 001042 989 NIWDIRAGRQMHKFLGHTK-WIRSIRMDRDTVITGSDDW--------------------------------------TAR 1029 (1178)
Q Consensus 989 ~lwD~~~~~~~~~~~~~~~-~v~~l~~~~~~l~sgs~dg--------------------------------------~I~ 1029 (1178)
.++|..+.+...++.-... .-..+..+++++++.+.+. .|.
T Consensus 178 tvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 9999999888877653221 1222333555666665432 467
Q ss_pred EEEcCC--Cee-eeEeccCCCcEEEEEEecCCCEEEEEe-CCCcEEEEECCCCce----------EEEEEecccCC-cEE
Q 001042 1030 MWSISR--GTC-DAVLACHAGPVQCVEYSSSDRGIITGS-SDGLLRFWENDDGGI----------KCVKNVTIHSS-AIL 1094 (1178)
Q Consensus 1030 iwd~~~--~~~-~~~~~~h~~~I~~l~~spdg~~L~sgs-~Dg~I~iwd~~~~~~----------~~~~~~~~h~~-~i~ 1094 (1178)
+.|.++ ++. +..+.. .....++.++|||+++++++ .+.+|.++|+.+.+. ........... .-+
T Consensus 258 VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~ 336 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHT 336 (595)
T ss_dssp EEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEE
T ss_pred EEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceE
Confidence 777776 444 334432 23457899999999877665 688999999985410 12333332333 336
Q ss_pred EEecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCccc-----EEEEEEcCCCCEEEEEeC---C
Q 001042 1095 SINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAV-----VRCIASDLERKRICSGGR---N 1166 (1178)
Q Consensus 1095 ~is~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~-----V~~lafspdg~~Las~s~---D 1166 (1178)
+++++|...++..-|+.|.+||+.... ..+ .|.+ .++.+.....|..+ -.++.++|||++|+++.. |
T Consensus 337 aF~~dG~aY~t~~ldsqV~kwdi~~a~-~~~--~g~~--~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skd 411 (595)
T 1fwx_A 337 AFDGRGNAYTSLFLDSQVVKWNIEDAI-RAY--AGEK--VDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKD 411 (595)
T ss_dssp EECTTSEEEEEETTTTEEEEEEHHHHH-HHH--HTCS--CCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTT
T ss_pred EECCCCeEEEEEecCCcEEEEEhhHhh-hhh--cccc--cceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcc
Confidence 779999555566779999999987411 011 1111 11333333333221 122346899999998853 4
Q ss_pred Cc----------EEEEECCCC
Q 001042 1167 GL----------LRLWEATIN 1177 (1178)
Q Consensus 1167 g~----------V~IWdv~tg 1177 (1178)
+. -.++|++++
T Consensus 412 r~~~~gp~~~~~~ql~dis~~ 432 (595)
T 1fwx_A 412 RFLNVGPLKPENDQLIDISGD 432 (595)
T ss_dssp SSCCCCSSCCEEEEEEECSSS
T ss_pred ccccCCCCCCCcceEEEcCCC
Confidence 43 277888655
No 252
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.43 E-value=0.00017 Score=78.78 Aligned_cols=222 Identities=8% Similarity=-0.050 Sum_probs=134.9
Q ss_pred CEEEEEeCCCcEEEEECCCCcE-----EEEecCCCCceEEEEEe-CCCeEE-EEeCCCeEEEEeCCCCeEEEEecCCCCC
Q 001042 894 GKVVSGSDDQSVLVWDKQTSQL-----LEELKGHDAQVSCVRML-SGERVL-TASHDGTVKMWDVRTDTCVATVGRCSSA 966 (1178)
Q Consensus 894 ~~l~sgs~dg~I~iwd~~t~~~-----~~~l~~h~~~V~~l~~~-~~~~l~-sgs~dg~V~iwd~~~~~~~~~~~~~~~~ 966 (1178)
.+|+.+.. +.|+.++++.... ...+.........+++. +++.++ +-..++.|..+|..++............
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 34555443 4788888775432 11122223456788888 355555 4445789999999776544444333357
Q ss_pred EEEEEEeCCCCEEEEE-eCCCeEEEEECCCCceEEEEecCCccEEEEEEcC--CEEEEEeC---CCcEEEEEcCCCeeee
Q 001042 967 VLCMEYDDSTGILAAG-GRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR--DTVITGSD---DWTARMWSISRGTCDA 1040 (1178)
Q Consensus 967 I~~l~~sp~~~~l~sg-s~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~--~~l~sgs~---dg~I~iwd~~~~~~~~ 1040 (1178)
...+++++++..++.+ ...+.|.++|...................+++++ ..+..+.. .+.|..+++.. ....
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~ 159 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRR 159 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCE
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcE
Confidence 8999999976655554 4567999999875433222222224678888865 45555553 36888888754 3333
Q ss_pred Eec-cCCCcEEEEEEecCCCEEEEE-eCCCcEEEEECCCCceEEEEEecccCCcEEEEecCCCEEEEEe-CCCcEEEEEc
Q 001042 1041 VLA-CHAGPVQCVEYSSSDRGIITG-SSDGLLRFWENDDGGIKCVKNVTIHSSAILSINAGDHWLGIGA-ADNSMSLFHR 1117 (1178)
Q Consensus 1041 ~~~-~h~~~I~~l~~spdg~~L~sg-s~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~Lasgs-~Dg~I~iwd~ 1117 (1178)
.+. ..-.....++++++++.|..+ ...+.|..+|.++...... ... ......+..++..+..+. ..+.|..+|.
T Consensus 160 ~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~--~~~-~~~P~gi~~d~~~lyva~~~~~~v~~~d~ 236 (267)
T 1npe_A 160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKV--LEG-LQYPFAVTSYGKNLYYTDWKTNSVIAMDL 236 (267)
T ss_dssp EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEE--EEC-CCSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred EEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEE--ecC-CCCceEEEEeCCEEEEEECCCCeEEEEeC
Confidence 332 233467899999987766544 4567899999876432222 222 122244545555555554 5688999998
Q ss_pred CCC
Q 001042 1118 PQE 1120 (1178)
Q Consensus 1118 ~~~ 1120 (1178)
.++
T Consensus 237 ~~g 239 (267)
T 1npe_A 237 AIS 239 (267)
T ss_dssp TTT
T ss_pred CCC
Confidence 743
No 253
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.42 E-value=3.3e-05 Score=82.85 Aligned_cols=174 Identities=7% Similarity=0.035 Sum_probs=123.7
Q ss_pred EecCCCEEEEEeCCC--cEEEEECCCCcEEEEecCCCCc-eEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCC
Q 001042 889 INSDRGKVVSGSDDQ--SVLVWDKQTSQLLEELKGHDAQ-VSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSS 965 (1178)
Q Consensus 889 ~s~d~~~l~sgs~dg--~I~iwd~~t~~~~~~l~~h~~~-V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~ 965 (1178)
++ ++....+++.+| .|+++|+++++.+..+...... -..++..++...++.-.++.+.+||..+.+.+.++.....
T Consensus 50 ~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~e 128 (262)
T 3nol_A 50 YR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGE 128 (262)
T ss_dssp EE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSC
T ss_pred EE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCC
Confidence 45 565566666665 8999999999999888654332 2345555554445555689999999999999988865332
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecC--C---ccEEEEEEcCCEEEEEe-CCCcEEEEEcCCCeee
Q 001042 966 AVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGH--T---KWIRSIRMDRDTVITGS-DDWTARMWSISRGTCD 1039 (1178)
Q Consensus 966 ~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~--~---~~v~~l~~~~~~l~sgs-~dg~I~iwd~~~~~~~ 1039 (1178)
...++++++.|+.+..++.|.++|..+.+.+.++.-. . ..++.+.+.+..+.+.. .+..|.+.|.++++.+
T Consensus 129 ---G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w~~~~I~vIDp~tG~V~ 205 (262)
T 3nol_A 129 ---GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVWQTNKIVRIDPETGKVT 205 (262)
T ss_dssp ---CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEEEECTTTCBEE
T ss_pred ---ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEccCCeEEEEECCCCcEE
Confidence 2333456777777777889999999999988876542 1 23455666444555554 6889999999999998
Q ss_pred eEeccC------------CCcEEEEEEecCCCEEEEEeC
Q 001042 1040 AVLACH------------AGPVQCVEYSSSDRGIITGSS 1066 (1178)
Q Consensus 1040 ~~~~~h------------~~~I~~l~~spdg~~L~sgs~ 1066 (1178)
..+... ....++++|+|+++.|...+.
T Consensus 206 ~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 206 GIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 877532 135689999999887776653
No 254
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.41 E-value=0.00019 Score=87.81 Aligned_cols=187 Identities=14% Similarity=0.162 Sum_probs=119.5
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEecCCCCce---------EEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCC
Q 001042 893 RGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQV---------SCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRC 963 (1178)
Q Consensus 893 ~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V---------~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~ 963 (1178)
+..+++++.++.|.-+|..+|+.+.++....... ..++. .++.++.++.|+.|..+|..+|+.+......
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~-~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI-YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE-ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE-ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 4456666664459999999999988876443210 12222 3667888999999999999999988776432
Q ss_pred CC----CEE---EEEEe-CCCC-EEEEEeC------CCeEEEEECCCCceEEEEecCCccE-------------------
Q 001042 964 SS----AVL---CMEYD-DSTG-ILAAGGR------DAVANIWDIRAGRQMHKFLGHTKWI------------------- 1009 (1178)
Q Consensus 964 ~~----~I~---~l~~s-p~~~-~l~sgs~------dg~I~lwD~~~~~~~~~~~~~~~~v------------------- 1009 (1178)
.. .+. .+.-. .+++ .+++++. +|.|.-+|.++|+.+.........+
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w 226 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence 21 111 11111 1233 5666553 7899999999999887654321100
Q ss_pred ----------------------EEEEEc--CCEEEEEeC--------------------C----CcEEEEEcCCCeeeeE
Q 001042 1010 ----------------------RSIRMD--RDTVITGSD--------------------D----WTARMWSISRGTCDAV 1041 (1178)
Q Consensus 1010 ----------------------~~l~~~--~~~l~sgs~--------------------d----g~I~iwd~~~~~~~~~ 1041 (1178)
...+++ .+.++.+.. | +.|..+|..+|+.+..
T Consensus 227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~ 306 (582)
T 1flg_A 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF 306 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence 012333 346665553 2 5899999999999888
Q ss_pred ecc--CC--------CcEEEEEEe-cCCC---EEEEEeCCCcEEEEECCCCceE
Q 001042 1042 LAC--HA--------GPVQCVEYS-SSDR---GIITGSSDGLLRFWENDDGGIK 1081 (1178)
Q Consensus 1042 ~~~--h~--------~~I~~l~~s-pdg~---~L~sgs~Dg~I~iwd~~~~~~~ 1081 (1178)
++. |. .++. +... .+|+ .++.++.+|.++++|..+|+..
T Consensus 307 ~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 359 (582)
T 1flg_A 307 YQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQ 359 (582)
T ss_dssp EESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred EeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEe
Confidence 753 32 1221 1222 4674 6888999999999999999643
No 255
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.31 E-value=2.8e-05 Score=97.09 Aligned_cols=265 Identities=11% Similarity=0.063 Sum_probs=152.8
Q ss_pred EEec-CCCEEEEEeCCC-----------cEEEEECCCCcEE--EEec-CCCCceEEEEEe-CCCeEEEEeC-CCeEEEEe
Q 001042 888 AINS-DRGKVVSGSDDQ-----------SVLVWDKQTSQLL--EELK-GHDAQVSCVRML-SGERVLTASH-DGTVKMWD 950 (1178)
Q Consensus 888 ~~s~-d~~~l~sgs~dg-----------~I~iwd~~t~~~~--~~l~-~h~~~V~~l~~~-~~~~l~sgs~-dg~V~iwd 950 (1178)
++.+ +++.++.|+.++ .+.+||..+++.. ..+. .+.....++++. ++..++.|+. ++.+.+||
T Consensus 192 av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd 271 (656)
T 1k3i_A 192 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYD 271 (656)
T ss_dssp EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEE
T ss_pred EEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEec
Confidence 4566 888888887543 5889999887532 2232 233334445555 7778888874 56899999
Q ss_pred CCCCeEEEEecCCCC-CEEEEEEeCCCCEEEEEe-CC-----CeEEEEECCCCceEEEE----e-cCCccEEEE-EEcCC
Q 001042 951 VRTDTCVATVGRCSS-AVLCMEYDDSTGILAAGG-RD-----AVANIWDIRAGRQMHKF----L-GHTKWIRSI-RMDRD 1017 (1178)
Q Consensus 951 ~~~~~~~~~~~~~~~-~I~~l~~sp~~~~l~sgs-~d-----g~I~lwD~~~~~~~~~~----~-~~~~~v~~l-~~~~~ 1017 (1178)
..+++....-..... .-.+++..+++++++.|+ .+ ..+.+||..+++-...- . .....-.++ ..++.
T Consensus 272 ~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~ 351 (656)
T 1k3i_A 272 SSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNH 351 (656)
T ss_dssp GGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCS
T ss_pred CcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCc
Confidence 988765433211111 123456667899999988 34 56899999877543320 0 000000001 11333
Q ss_pred EEEEEeCC---------CcEEEEEcCCCeeeeEeccCCC---------cEEEEEEec-CCCEEEEEeCCC----------
Q 001042 1018 TVITGSDD---------WTARMWSISRGTCDAVLACHAG---------PVQCVEYSS-SDRGIITGSSDG---------- 1068 (1178)
Q Consensus 1018 ~l~sgs~d---------g~I~iwd~~~~~~~~~~~~h~~---------~I~~l~~sp-dg~~L~sgs~Dg---------- 1068 (1178)
..+.|+.+ ..+..||..+.........+.. .-.++.+.. ++++++.|+.++
T Consensus 352 iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~ 431 (656)
T 1k3i_A 352 AWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNA 431 (656)
T ss_dssp CCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCE
T ss_pred eEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcc
Confidence 34444433 4577888877654433322211 234455543 677888887543
Q ss_pred -cEEEEECCCCceEEEE--EecccC-CcEEEEecCCCEEEEEeCC-----------CcEEEEEcCCCccccccCCCCCcc
Q 001042 1069 -LLRFWENDDGGIKCVK--NVTIHS-SAILSINAGDHWLGIGAAD-----------NSMSLFHRPQERLGGFSGTGSKMS 1133 (1178)
Q Consensus 1069 -~I~iwd~~~~~~~~~~--~~~~h~-~~i~~is~dg~~Lasgs~D-----------g~I~iwd~~~~~~~~~~~~g~~~~ 1133 (1178)
.|.+||..+..+.... .+.... .....+.+++++++.|+.+ ..+.+||..+.
T Consensus 432 ~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~------------- 498 (656)
T 1k3i_A 432 HIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQD------------- 498 (656)
T ss_dssp EEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGT-------------
T ss_pred eEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCC-------------
Confidence 6788888877544433 222111 1223445799999999864 46889998643
Q ss_pred ceeEeeccCCCcccEEEEEEcCCCCEEEEEeC
Q 001042 1134 GWQLYRTPQKTVAVVRCIASDLERKRICSGGR 1165 (1178)
Q Consensus 1134 ~~~~~~~~~~h~~~V~~lafspdg~~Las~s~ 1165 (1178)
.|..............+..+.+||++++.||.
T Consensus 499 ~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 499 TFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp EEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred ceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 34443333222222234556799999999985
No 256
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.27 E-value=4e-05 Score=82.15 Aligned_cols=170 Identities=7% Similarity=-0.034 Sum_probs=122.4
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEecCCCC-ceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEE
Q 001042 892 DRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDA-QVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCM 970 (1178)
Q Consensus 892 d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~-~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l 970 (1178)
++....+.+.+|.|+++|+++++.+..+ -... .-..++..++...++.-.++.+.+||..+.+.+.++..... -..+
T Consensus 64 ~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~e-GwGL 141 (268)
T 3nok_A 64 QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSGE-GWGL 141 (268)
T ss_dssp TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECSSC-CCCE
T ss_pred CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCCc-eeEE
Confidence 3455567777889999999999988877 3222 22346665566566666789999999999999998865332 2344
Q ss_pred EEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCC-----ccEEEEEEcCCEEEEEe-CCCcEEEEEcCCCeeeeEecc
Q 001042 971 EYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHT-----KWIRSIRMDRDTVITGS-DDWTARMWSISRGTCDAVLAC 1044 (1178)
Q Consensus 971 ~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~-----~~v~~l~~~~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~ 1044 (1178)
+ ++++.|+.+..++.|.++|..+.+.+.++.-.. ..++.+.+....+.+.. .+..|.+.|.++++.+..+..
T Consensus 142 t--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s~~I~vIDp~TG~V~~~Idl 219 (268)
T 3nok_A 142 C--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIWHSSDVLEIDPATGTVVGVIDA 219 (268)
T ss_dssp E--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTCSEEEEECTTTCBEEEEEEC
T ss_pred e--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEECCCCeEEEEeCCCCcEEEEEEC
Confidence 4 567888888789999999999999888765422 24466777444555555 678999999999998887653
Q ss_pred C-------------CCcEEEEEEecCCCEEEEEe
Q 001042 1045 H-------------AGPVQCVEYSSSDRGIITGS 1065 (1178)
Q Consensus 1045 h-------------~~~I~~l~~spdg~~L~sgs 1065 (1178)
. .+..++++++|+++.|+..+
T Consensus 220 ~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 220 SALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp HHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 1 13578999999876655554
No 257
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.26 E-value=0.00021 Score=75.97 Aligned_cols=170 Identities=10% Similarity=0.019 Sum_probs=121.5
Q ss_pred CCEEEEEeCC--CcEEEEECCCCcEEEEecCCCCc-eEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEE
Q 001042 893 RGKVVSGSDD--QSVLVWDKQTSQLLEELKGHDAQ-VSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLC 969 (1178)
Q Consensus 893 ~~~l~sgs~d--g~I~iwd~~t~~~~~~l~~h~~~-V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~ 969 (1178)
+....+.+.+ +.|+.+|+++++.+..+...... -..++..++......-.++.+.+||..+.+.+.++...... ..
T Consensus 31 ~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G-wg 109 (243)
T 3mbr_X 31 GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEG-WA 109 (243)
T ss_dssp TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCC-CE
T ss_pred CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCc-eE
Confidence 3444455554 48999999999999887644332 23455555555556667899999999999999988654322 34
Q ss_pred EEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCC-----ccEEEEEEcCCEEEEEe-CCCcEEEEEcCCCeeeeEec
Q 001042 970 MEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHT-----KWIRSIRMDRDTVITGS-DDWTARMWSISRGTCDAVLA 1043 (1178)
Q Consensus 970 l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~-----~~v~~l~~~~~~l~sgs-~dg~I~iwd~~~~~~~~~~~ 1043 (1178)
++ +++..|+.+..++.|.++|..+.+.+.++.-.. ..++.+.+.+..+.+.. .+..|.+.|.++|+.+..+.
T Consensus 110 lt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~~I~vIDp~tG~V~~~id 187 (243)
T 3mbr_X 110 LT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTSRIARIDPASGKVVAWID 187 (243)
T ss_dssp EE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTTEEEEECTTTCBEEEEEE
T ss_pred Ee--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCCeEEEEECCCCCEEEEEE
Confidence 44 567777777778999999999999888775422 24566777555555554 67799999999999888765
Q ss_pred cC-------------CCcEEEEEEecCCCEEEEEe
Q 001042 1044 CH-------------AGPVQCVEYSSSDRGIITGS 1065 (1178)
Q Consensus 1044 ~h-------------~~~I~~l~~spdg~~L~sgs 1065 (1178)
.. .+..++++++|+++.|...+
T Consensus 188 l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 188 LQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp CGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred CCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 21 13578999999877766655
No 258
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.26 E-value=0.00032 Score=76.08 Aligned_cols=202 Identities=9% Similarity=-0.045 Sum_probs=137.5
Q ss_pred cEEEEecCCCC--ceEEEEEeCCCeEEEEe-C--CCeEEEEeCCCCeEEEEecCCC-CCEEEEEEeCCCCEEEEE-eCCC
Q 001042 914 QLLEELKGHDA--QVSCVRMLSGERVLTAS-H--DGTVKMWDVRTDTCVATVGRCS-SAVLCMEYDDSTGILAAG-GRDA 986 (1178)
Q Consensus 914 ~~~~~l~~h~~--~V~~l~~~~~~~l~sgs-~--dg~V~iwd~~~~~~~~~~~~~~-~~I~~l~~sp~~~~l~sg-s~dg 986 (1178)
+.+.++. |.. ....+.|++++.++.++ . ++.|.++|..+++.+..+.... .....++++ ++.++.+ -.++
T Consensus 10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~ 86 (266)
T 2iwa_A 10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKN 86 (266)
T ss_dssp EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCS
T ss_pred eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCC
Confidence 4556664 443 36789998634555554 2 5899999999999988875322 233456665 4455444 4678
Q ss_pred eEEEEECCCCceEEEEecCCccEEEEEEcCCEEEEEeCCCcEEEEEcCCCeeeeEeccCC-----CcEEEEEEecCCCEE
Q 001042 987 VANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHA-----GPVQCVEYSSSDRGI 1061 (1178)
Q Consensus 987 ~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~-----~~I~~l~~spdg~~L 1061 (1178)
.+.++|..+.+.+.++......-..++.+++.++++..++.|.++|..+.+....+.-.. ..++.+.|. +|...
T Consensus 87 ~v~viD~~t~~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~ly 165 (266)
T 2iwa_A 87 IGFIYDRRTLSNIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVW 165 (266)
T ss_dssp EEEEEETTTTEEEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred EEEEEECCCCcEEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEE
Confidence 999999999999988853312335578888877777788999999999988877766321 236788888 67555
Q ss_pred EEEeCCCcEEEEECCCCceEEEEEeccc---------C--C--cEEEEecCCC-EEEEEeCCCcEEEEEcCC
Q 001042 1062 ITGSSDGLLRFWENDDGGIKCVKNVTIH---------S--S--AILSINAGDH-WLGIGAADNSMSLFHRPQ 1119 (1178)
Q Consensus 1062 ~sgs~Dg~I~iwd~~~~~~~~~~~~~~h---------~--~--~i~~is~dg~-~Lasgs~Dg~I~iwd~~~ 1119 (1178)
+....++.|.+.|..+++......+.+- . . .-.+++++++ +++++...+.+...++..
T Consensus 166 vn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 166 ANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp EEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred EecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 5555688999999999954333333221 0 1 1245688876 455566778888888764
No 259
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.25 E-value=0.00011 Score=78.82 Aligned_cols=190 Identities=10% Similarity=0.096 Sum_probs=129.3
Q ss_pred cEEEEecCCCCc--eEEEEEeCCCeEEEEeCCC--eEEEEeCCCCeEEEEecCCCCC-EEEEEEeCCCCEEEEEe-CCCe
Q 001042 914 QLLEELKGHDAQ--VSCVRMLSGERVLTASHDG--TVKMWDVRTDTCVATVGRCSSA-VLCMEYDDSTGILAAGG-RDAV 987 (1178)
Q Consensus 914 ~~~~~l~~h~~~--V~~l~~~~~~~l~sgs~dg--~V~iwd~~~~~~~~~~~~~~~~-I~~l~~sp~~~~l~sgs-~dg~ 987 (1178)
+.+.++. |... ...+.|+++..+.+.+.+| .|+.+|+.+++.+..+...... -..++. +++.+...+ .++.
T Consensus 32 ~vv~~~p-hd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g~~ly~ltw~~~~ 108 (262)
T 3nol_A 32 QIVHSYP-HDTKAFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WKDKIVGLTWKNGL 108 (262)
T ss_dssp EEEEEEE-CCTTCEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEESSSSE
T ss_pred EEEEEec-CCCCcccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--eCCEEEEEEeeCCE
Confidence 3455664 4433 4788888766666777766 8999999999998887543322 133444 345555554 5889
Q ss_pred EEEEECCCCceEEEEecCCccEEEEEEcCCEEEEEeCCCcEEEEEcCCCeeeeEeccC--C---CcEEEEEEecCCCEEE
Q 001042 988 ANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACH--A---GPVQCVEYSSSDRGII 1062 (1178)
Q Consensus 988 I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h--~---~~I~~l~~spdg~~L~ 1062 (1178)
+.+||..+.+.+.++.... .-..++.+++.++.+..++.|.++|..+.+.+.++... . ..++.+.|. +|+..+
T Consensus 109 v~v~D~~t~~~~~ti~~~~-eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lya 186 (262)
T 3nol_A 109 GFVWNIRNLRQVRSFNYDG-EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFA 186 (262)
T ss_dssp EEEEETTTCCEEEEEECSS-CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred EEEEECccCcEEEEEECCC-CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEE
Confidence 9999999999999886533 33567788888887777889999999998888776542 1 335567887 676555
Q ss_pred EEeCCCcEEEEECCCCceEEEEEeccc---------CCcE---EEEecCCCEEEEEeC
Q 001042 1063 TGSSDGLLRFWENDDGGIKCVKNVTIH---------SSAI---LSINAGDHWLGIGAA 1108 (1178)
Q Consensus 1063 sgs~Dg~I~iwd~~~~~~~~~~~~~~h---------~~~i---~~is~dg~~Lasgs~ 1108 (1178)
..-.++.|.+.|..+|+......+.+- ...+ .+++|+++.|.+.+.
T Consensus 187 n~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 187 NVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 554688999999999954444443211 0111 455787776666654
No 260
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.19 E-value=9.7e-05 Score=79.16 Aligned_cols=167 Identities=8% Similarity=0.003 Sum_probs=120.1
Q ss_pred cEEEEecCCCC--ceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCE--EEEEEeCCCCEEEEEeCCCeEE
Q 001042 914 QLLEELKGHDA--QVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAV--LCMEYDDSTGILAAGGRDAVAN 989 (1178)
Q Consensus 914 ~~~~~l~~h~~--~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I--~~l~~sp~~~~l~sgs~dg~I~ 989 (1178)
+.+.++. |.. ....+.|.++..+.+.+.+|.|+++|+.+++.+..+ .. ... ..++... ++...+.-.++.+.
T Consensus 44 ~Vv~~~p-hd~~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g-~~Ly~ltw~~~~v~ 119 (268)
T 3nok_A 44 HIIREYP-HATNAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDG-ERLYQLTWTEGLLF 119 (268)
T ss_dssp EEEEEEE-CCTTCCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECS-SCEEEEESSSCEEE
T ss_pred EEEEEEc-CCCccccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeC-CEEEEEEccCCEEE
Confidence 3455553 433 347888888777888888999999999999988776 32 233 3355543 23444445689999
Q ss_pred EEECCCCceEEEEecCCccEEEEEEcCCEEEEEeCCCcEEEEEcCCCeeeeEeccCC-----CcEEEEEEecCCCEEEEE
Q 001042 990 IWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHA-----GPVQCVEYSSSDRGIITG 1064 (1178)
Q Consensus 990 lwD~~~~~~~~~~~~~~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~-----~~I~~l~~spdg~~L~sg 1064 (1178)
+||..+.+.+.++... ..-..++.+++.|+.+..++.|.++|..+.+.+.++.... ..++.+.|. +|+..+..
T Consensus 120 V~D~~Tl~~~~ti~~~-~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanv 197 (268)
T 3nok_A 120 TWSGMPPQRERTTRYS-GEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANI 197 (268)
T ss_dssp EEETTTTEEEEEEECS-SCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred EEECCcCcEEEEEeCC-CceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEE
Confidence 9999999999988653 3346777889988888889999999999998887776322 245677887 67555444
Q ss_pred eCCCcEEEEECCCCceEEEEEe
Q 001042 1065 SSDGLLRFWENDDGGIKCVKNV 1086 (1178)
Q Consensus 1065 s~Dg~I~iwd~~~~~~~~~~~~ 1086 (1178)
-.++.|.+.|..+|+......+
T Consensus 198 w~s~~I~vIDp~TG~V~~~Idl 219 (268)
T 3nok_A 198 WHSSDVLEIDPATGTVVGVIDA 219 (268)
T ss_dssp TTCSEEEEECTTTCBEEEEEEC
T ss_pred CCCCeEEEEeCCCCcEEEEEEC
Confidence 4688999999999954444443
No 261
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.16 E-value=5e-05 Score=94.79 Aligned_cols=260 Identities=10% Similarity=0.051 Sum_probs=151.2
Q ss_pred C-CCCEEEEEeCCC-----------cEEEEcCCCCCceeeEeecc-cccce--EEEecCCCEEEEEeC-CCcEEEEECCC
Q 001042 849 E-DAGFFISGSTDC-----------LVKIWDPSLRGSELRATLKG-HTRTV--RAINSDRGKVVSGSD-DQSVLVWDKQT 912 (1178)
Q Consensus 849 ~-d~~~Lasgs~Dg-----------~I~iWd~~~~~~~~~~~l~~-h~~~V--~~~s~d~~~l~sgs~-dg~I~iwd~~t 912 (1178)
+ ++++++.|+.++ .+.+||...........+.. +.... .++..++..++.|+. ++.+.+||..+
T Consensus 195 ~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t 274 (656)
T 1k3i_A 195 PTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSS 274 (656)
T ss_dssp TTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGG
T ss_pred ecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcC
Confidence 5 888999987643 58899987555444333322 22222 345688999999984 46899999987
Q ss_pred CcEEEEecCCCC-ceEEEEEe-CCCeEEEEe-CC-----CeEEEEeCCCCeEEEEec----CCCCCEEEEEEeCCCCEEE
Q 001042 913 SQLLEELKGHDA-QVSCVRML-SGERVLTAS-HD-----GTVKMWDVRTDTCVATVG----RCSSAVLCMEYDDSTGILA 980 (1178)
Q Consensus 913 ~~~~~~l~~h~~-~V~~l~~~-~~~~l~sgs-~d-----g~V~iwd~~~~~~~~~~~----~~~~~I~~l~~sp~~~~l~ 980 (1178)
++-...-..+.. .-.+++.. ++..++.|+ .+ ..+.+||..+++....-. .....-....+..++..++
T Consensus 275 ~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv 354 (656)
T 1k3i_A 275 DSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWL 354 (656)
T ss_dssp TEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCE
T ss_pred CceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEE
Confidence 754432221211 12334444 788888888 34 568999998876543210 0000000011223455555
Q ss_pred EEeCC---------CeEEEEECCCCceEEEEecCCc---------cEEEEEE---cCCEEEEEeCCC-----------cE
Q 001042 981 AGGRD---------AVANIWDIRAGRQMHKFLGHTK---------WIRSIRM---DRDTVITGSDDW-----------TA 1028 (1178)
Q Consensus 981 sgs~d---------g~I~lwD~~~~~~~~~~~~~~~---------~v~~l~~---~~~~l~sgs~dg-----------~I 1028 (1178)
.|+.+ ..+..||..+............ .-.++.+ ++..++.|+.++ .+
T Consensus 355 ~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v 434 (656)
T 1k3i_A 355 FGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHII 434 (656)
T ss_dssp EECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEE
T ss_pred EECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEE
Confidence 55544 3567889887764433322211 2234433 455777777532 67
Q ss_pred EEEEcCCCeeeeEe--ccCCCc-EEEEEEecCCCEEEEEeCC-----------CcEEEEECCCCceEEEEEecccCC--c
Q 001042 1029 RMWSISRGTCDAVL--ACHAGP-VQCVEYSSSDRGIITGSSD-----------GLLRFWENDDGGIKCVKNVTIHSS--A 1092 (1178)
Q Consensus 1029 ~iwd~~~~~~~~~~--~~h~~~-I~~l~~spdg~~L~sgs~D-----------g~I~iwd~~~~~~~~~~~~~~h~~--~ 1092 (1178)
.+||..+.+..... ..+... -.+++..++|+.++.|+.+ ..+.+||..+.++..+........ .
T Consensus 435 ~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs 514 (656)
T 1k3i_A 435 TLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHS 514 (656)
T ss_dssp ECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTE
T ss_pred EcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCcccccc
Confidence 88888776654332 112222 2345667899999999854 468999998875554433322111 1
Q ss_pred EEEEecCCCEEEEEeC
Q 001042 1093 ILSINAGDHWLGIGAA 1108 (1178)
Q Consensus 1093 i~~is~dg~~Lasgs~ 1108 (1178)
...+.++|+.++.|+.
T Consensus 515 ~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 515 ISLLLPDGRVFNGGGG 530 (656)
T ss_dssp EEEECTTSCEEEEECC
T ss_pred HhhcCCCcEEEecCCC
Confidence 2334689999999985
No 262
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.16 E-value=0.00051 Score=73.00 Aligned_cols=168 Identities=11% Similarity=0.033 Sum_probs=118.9
Q ss_pred cEEEEecCCC--CceEEEEEeCCCeEEEEeCCC--eEEEEeCCCCeEEEEecCCCCC-EEEEEEeCCCCEEE-EEeCCCe
Q 001042 914 QLLEELKGHD--AQVSCVRMLSGERVLTASHDG--TVKMWDVRTDTCVATVGRCSSA-VLCMEYDDSTGILA-AGGRDAV 987 (1178)
Q Consensus 914 ~~~~~l~~h~--~~V~~l~~~~~~~l~sgs~dg--~V~iwd~~~~~~~~~~~~~~~~-I~~l~~sp~~~~l~-sgs~dg~ 987 (1178)
+.+.++. |. .....+.|+++..+.+.+.+| .|+.+|+.+++.+..+...... -..++.. ++.+. ..-.++.
T Consensus 10 ~v~~~~p-hd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~ 86 (243)
T 3mbr_X 10 RVVKRYP-HDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHE 86 (243)
T ss_dssp EEEEEEE-CCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSE
T ss_pred EEEEEcC-CCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCE
Confidence 3455553 54 446789998866666767654 8999999999998887543322 2334443 44444 4456899
Q ss_pred EEEEECCCCceEEEEecCCccEEEEEEcCCEEEEEeCCCcEEEEEcCCCeeeeEeccCC-----CcEEEEEEecCCCEEE
Q 001042 988 ANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHA-----GPVQCVEYSSSDRGII 1062 (1178)
Q Consensus 988 I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~-----~~I~~l~~spdg~~L~ 1062 (1178)
+.+||..+.+.+.++.... .-..++.++..++.+..++.|.++|..+.+.+.++.... ..++.+.+. +|+..+
T Consensus 87 v~v~D~~tl~~~~ti~~~~-~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lya 164 (243)
T 3mbr_X 87 GFVYDLATLTPRARFRYPG-EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLA 164 (243)
T ss_dssp EEEEETTTTEEEEEEECSS-CCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred EEEEECCcCcEEEEEeCCC-CceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEE
Confidence 9999999999999886543 335777888888888889999999999998887776422 345677776 566555
Q ss_pred EEeCCCcEEEEECCCCceEEEEEe
Q 001042 1063 TGSSDGLLRFWENDDGGIKCVKNV 1086 (1178)
Q Consensus 1063 sgs~Dg~I~iwd~~~~~~~~~~~~ 1086 (1178)
..-.+..|.+.|..+|+......+
T Consensus 165 nvw~s~~I~vIDp~tG~V~~~idl 188 (243)
T 3mbr_X 165 NVWLTSRIARIDPASGKVVAWIDL 188 (243)
T ss_dssp EETTTTEEEEECTTTCBEEEEEEC
T ss_pred EECCCCeEEEEECCCCCEEEEEEC
Confidence 554678999999999954444443
No 263
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.07 E-value=0.021 Score=70.15 Aligned_cols=351 Identities=8% Similarity=-0.030 Sum_probs=181.0
Q ss_pred CcceEEEEecCCCCcccccccc---eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceecc
Q 001042 768 GRSWVQSMFSREASSRSHSFSR---VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDL 844 (1178)
Q Consensus 768 ~~~i~~~aFSpdg~~las~~~d---I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~ 844 (1178)
-.....++|++++..+..+... |..++.++... ....+..--.....|++.
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~------------------~~~v~~~~~~~P~GlAvD-------- 92 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES------------------VQNVVVSGLLSPDGLACD-------- 92 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----------------------CEEEECSSCSCEEEEEEE--------
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCc------------------eEEEEeCCCCCcCeEEEE--------
Confidence 3457788999977666554332 77787765421 112222222456778875
Q ss_pred ccccC-CCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEEeC--CCcEEEEECCCCcEEEEecC
Q 001042 845 VGDRE-DAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSD--DQSVLVWDKQTSQLLEELKG 921 (1178)
Q Consensus 845 ~~~s~-d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sgs~--dg~I~iwd~~t~~~~~~l~~ 921 (1178)
. .+++.++-...+.|.+.+.+......+..-......-.++.|.+..|+.+.. .+.|...+++..........
T Consensus 93 ----~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~ 168 (619)
T 3s94_A 93 ----WLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS 168 (619)
T ss_dssp ----TTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred ----ecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeC
Confidence 4 4556666667789999997622111111111122223357777666655543 35676667654333333333
Q ss_pred CCCceEEEEEe-CCCeEEEE-eCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceE
Q 001042 922 HDAQVSCVRML-SGERVLTA-SHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQM 999 (1178)
Q Consensus 922 h~~~V~~l~~~-~~~~l~sg-s~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~ 999 (1178)
.-.....+++. +++.|+.+ ...+.|...|+.................++++..+ ..+++-..++.|...|..+++..
T Consensus 169 ~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~ 247 (619)
T 3s94_A 169 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGL 247 (619)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCC
T ss_pred CCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCccc
Confidence 44567889888 45555544 45678999998654433222212222345666655 44444445678888888776543
Q ss_pred EEEecCCc--------------------------------------cEEEEEEc--------------CCEEEEEeCCCc
Q 001042 1000 HKFLGHTK--------------------------------------WIRSIRMD--------------RDTVITGSDDWT 1027 (1178)
Q Consensus 1000 ~~~~~~~~--------------------------------------~v~~l~~~--------------~~~l~sgs~dg~ 1027 (1178)
..+..... .-.|.+.. +..++.-+..+.
T Consensus 248 ~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~~~~ 327 (619)
T 3s94_A 248 REIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTD 327 (619)
T ss_dssp EECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEESSC
T ss_pred EEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEcccc
Confidence 32211000 01121111 111222223445
Q ss_pred EEEEEcCCCeeee-Eec-cCCCcEEEEEEecCCCEEE-EEeCCCcEEEEECCCCceEEEEEecccCCcEEEEec-CCCEE
Q 001042 1028 ARMWSISRGTCDA-VLA-CHAGPVQCVEYSSSDRGII-TGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSINA-GDHWL 1103 (1178)
Q Consensus 1028 I~iwd~~~~~~~~-~~~-~h~~~I~~l~~spdg~~L~-sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is~-dg~~L 1103 (1178)
|+..++....... .+. ..-..+.+++|++.+..|. +-...+.|+.++.+......+.........-.++.+ .+++.
T Consensus 328 i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY 407 (619)
T 3s94_A 328 LRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLY 407 (619)
T ss_dssp EEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEE
T ss_pred eEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEE
Confidence 6666665543211 111 1123577899998655554 444678899999876543333222212333456665 44555
Q ss_pred EEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEe
Q 001042 1104 GIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGG 1164 (1178)
Q Consensus 1104 asgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s 1164 (1178)
++-+..+.|.+.++.... . +.+. ...-...+++++.|....|.-++
T Consensus 408 ~tD~~~~~I~v~~~~G~~----------~---~~l~--~~~l~~P~~iavdp~~G~ly~tD 453 (619)
T 3s94_A 408 WTDTGTDRIEVTRLNGTM----------R---KILI--SEDLEEPRAIVLDPMVGYMYWTD 453 (619)
T ss_dssp EEETTTTEEEEEETTSCS----------C---EEEE--CTTCCSEEEEEEETTTTEEEEEE
T ss_pred EEeCCCCcEEEEeCCCCe----------E---EEEE--ECCCCCeeeEEEEcCCCcEEEec
Confidence 555567888888875321 1 1111 11233567888888644454443
No 264
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.07 E-value=0.00015 Score=86.57 Aligned_cols=229 Identities=11% Similarity=0.019 Sum_probs=154.1
Q ss_pred cCCCEEEEEeC-CCcEEEEECCCCcEEEEecC-CCCceEEEEE---eCCCeEEEEe------------------CCCeEE
Q 001042 891 SDRGKVVSGSD-DQSVLVWDKQTSQLLEELKG-HDAQVSCVRM---LSGERVLTAS------------------HDGTVK 947 (1178)
Q Consensus 891 ~d~~~l~sgs~-dg~I~iwd~~t~~~~~~l~~-h~~~V~~l~~---~~~~~l~sgs------------------~dg~V~ 947 (1178)
+||++++.... ++.|.+.|+.+.++.+.+.- .......+++ .++.++++++ .++.+.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 48888877665 45799999999998885542 2345778877 4678887774 346899
Q ss_pred EEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCC--------------------------------------eEE
Q 001042 948 MWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDA--------------------------------------VAN 989 (1178)
Q Consensus 948 iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg--------------------------------------~I~ 989 (1178)
++|..+.+...++.-.. ....++.+|+|+++++.+.+. .|.
T Consensus 179 vID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 99999999888875433 456788999999999888553 356
Q ss_pred EEECCC--Cce-EEEEecCCccEEEEEE--cCCEEE-EEeCCCcEEEEEcCCCe------------eeeEeccCCCcEEE
Q 001042 990 IWDIRA--GRQ-MHKFLGHTKWIRSIRM--DRDTVI-TGSDDWTARMWSISRGT------------CDAVLACHAGPVQC 1051 (1178)
Q Consensus 990 lwD~~~--~~~-~~~~~~~~~~v~~l~~--~~~~l~-sgs~dg~I~iwd~~~~~------------~~~~~~~h~~~I~~ 1051 (1178)
+.|.++ ++. +..+.. .....++.+ ++++++ ++..+.+|.++|+.+.+ ...... -......
T Consensus 258 VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h 335 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLH 335 (595)
T ss_dssp EEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEE
T ss_pred EEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcce
Confidence 666665 433 333321 123344555 455544 45578899999998653 222332 2345789
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCC--------ceEEEEEecccCCcE-EE------EecCCCEEEEEeC---CCc--
Q 001042 1052 VEYSSSDRGIITGSSDGLLRFWENDDG--------GIKCVKNVTIHSSAI-LS------INAGDHWLGIGAA---DNS-- 1111 (1178)
Q Consensus 1052 l~~spdg~~L~sgs~Dg~I~iwd~~~~--------~~~~~~~~~~h~~~i-~~------is~dg~~Lasgs~---Dg~-- 1111 (1178)
++|+++|...++...|++|..||++++ ....+..+..|..+- .. +++||++|+++.. |.-
T Consensus 336 ~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~ 415 (595)
T 1fwx_A 336 TAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLN 415 (595)
T ss_dssp EEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCC
T ss_pred EEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcccccc
Confidence 999999944556668999999999862 135666666665532 22 2699999998754 332
Q ss_pred --------EEEEEcCCCcc
Q 001042 1112 --------MSLFHRPQERL 1122 (1178)
Q Consensus 1112 --------I~iwd~~~~~~ 1122 (1178)
-.++|+.++++
T Consensus 416 ~gp~~~~~~ql~dis~~~m 434 (595)
T 1fwx_A 416 VGPLKPENDQLIDISGDKM 434 (595)
T ss_dssp CCSSCCEEEEEEECSSSSC
T ss_pred CCCCCCCcceEEEcCCCcE
Confidence 27888865543
No 265
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.07 E-value=0.00085 Score=75.40 Aligned_cols=235 Identities=11% Similarity=0.039 Sum_probs=137.0
Q ss_pred CceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEec-C------------------CCCCEEEEEEeCCCCEEEEEe
Q 001042 924 AQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVG-R------------------CSSAVLCMEYDDSTGILAAGG 983 (1178)
Q Consensus 924 ~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~-~------------------~~~~I~~l~~sp~~~~l~sgs 983 (1178)
....++++. +++.++++..++.|..||..+++...... . .......+++++++..|+++.
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d 98 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 98 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence 345667777 55668888899999999987765432211 0 013578999998333455565
Q ss_pred CCCeEEEEECCCCceEEEEec-----CCccEEEEEEcC-C-EEEEEeC------------------CCcEEEEEcCCCee
Q 001042 984 RDAVANIWDIRAGRQMHKFLG-----HTKWIRSIRMDR-D-TVITGSD------------------DWTARMWSISRGTC 1038 (1178)
Q Consensus 984 ~dg~I~lwD~~~~~~~~~~~~-----~~~~v~~l~~~~-~-~l~sgs~------------------dg~I~iwd~~~~~~ 1038 (1178)
..+.+..+|..+++. ..+.. .......+++++ + .+..+.. +|.|..||..+++.
T Consensus 99 ~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 177 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET 177 (322)
T ss_dssp TTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred CCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence 556688898775532 22211 113467788865 3 4444332 36788888776654
Q ss_pred eeEeccCCCcEEEEEEecCCCEEEEE-eCCCcEEEEECCCC---ceEEEEEecccCCcEEEEecCCCEEEEEeC------
Q 001042 1039 DAVLACHAGPVQCVEYSSSDRGIITG-SSDGLLRFWENDDG---GIKCVKNVTIHSSAILSINAGDHWLGIGAA------ 1108 (1178)
Q Consensus 1039 ~~~~~~h~~~I~~l~~spdg~~L~sg-s~Dg~I~iwd~~~~---~~~~~~~~~~h~~~i~~is~dg~~Lasgs~------ 1108 (1178)
..... .-...+.++++++|+.|+.+ +.++.|..|++.+. .........+ ..-.+++++|++.++...
T Consensus 178 ~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g--P~gi~~d~~G~l~va~~~~~~~~~ 254 (322)
T 2fp8_A 178 TLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN--PGNIKRNADGHFWVSSSEELDGNM 254 (322)
T ss_dssp EEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS--EEEEEECTTSCEEEEEEEETTSST
T ss_pred EEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC--CCCeEECCCCCEEEEecCcccccc
Confidence 33222 22345689999999866555 55688999998753 2222222222 222455788886666544
Q ss_pred ----CCcEEEEEcCCCccccccCCCCCccceeEeeccCCC-cccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001042 1109 ----DNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKT-VAVVRCIASDLERKRICSGGRNGLLRLWEATI 1176 (1178)
Q Consensus 1109 ----Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h-~~~V~~lafspdg~~Las~s~Dg~V~IWdv~t 1176 (1178)
.+.|..+|.. |..+ ..+....+. ...++++++ .++++.++...++.|.++++..
T Consensus 255 ~~~~~~~v~~~d~~----------G~~~---~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 255 HGRVDPKGIKFDEF----------GNIL---EVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp TSCEEEEEEEECTT----------SCEE---EEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred cCCCccEEEEECCC----------CCEE---EEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 3557777653 2111 111111111 234566666 4666666666788899998763
No 266
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.04 E-value=0.0037 Score=69.58 Aligned_cols=235 Identities=8% Similarity=-0.005 Sum_probs=137.0
Q ss_pred CcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCC--CeEE
Q 001042 913 SQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRD--AVAN 989 (1178)
Q Consensus 913 ~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~d--g~I~ 989 (1178)
.+.+..+... .....++|. ++..+++-..++.|..||..++ ....+. .......++++++|+++++.... ..|.
T Consensus 22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~ 98 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVV 98 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEE
Confidence 3445555432 557788887 5555555557899999998754 333332 24568899999999966655432 2477
Q ss_pred EEECCCCceEEEEec-CCccEEEEE-EcCCEEEEEe-CCCcEEEEEcCCCee-eeEec---------cCCCcEEEEEEec
Q 001042 990 IWDIRAGRQMHKFLG-HTKWIRSIR-MDRDTVITGS-DDWTARMWSISRGTC-DAVLA---------CHAGPVQCVEYSS 1056 (1178)
Q Consensus 990 lwD~~~~~~~~~~~~-~~~~v~~l~-~~~~~l~sgs-~dg~I~iwd~~~~~~-~~~~~---------~h~~~I~~l~~sp 1056 (1178)
.+|..+++....... .......++ +.+..++... .++.|+.+|..+++. +.... ..-...+.+ ++
T Consensus 99 ~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~ 176 (306)
T 2p4o_A 99 SLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KR 176 (306)
T ss_dssp EEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EE
T ss_pred EEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--Cc
Confidence 788777765432221 122233343 3444444444 588999999776431 11110 111234555 78
Q ss_pred CCCEEEEE-eCCCcEEEEECCC-CceEEEEEe-cccCCcEEEEecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCcc
Q 001042 1057 SDRGIITG-SSDGLLRFWENDD-GGIKCVKNV-TIHSSAILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMS 1133 (1178)
Q Consensus 1057 dg~~L~sg-s~Dg~I~iwd~~~-~~~~~~~~~-~~h~~~i~~is~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~ 1133 (1178)
+++.|+.+ +..+.|..++++. +.......+ ......-.+++++|++.++....+.|.+++.. ++.
T Consensus 177 dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~----------- 244 (306)
T 2p4o_A 177 FGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RST----------- 244 (306)
T ss_dssp ETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCE-----------
T ss_pred CCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCE-----------
Confidence 88766554 4678899999875 322111111 11122335778899887777777889998864 211
Q ss_pred ceeEeeccCCCcccEEEEEEc---CCCCEEEEEeCC
Q 001042 1134 GWQLYRTPQKTVAVVRCIASD---LERKRICSGGRN 1166 (1178)
Q Consensus 1134 ~~~~~~~~~~h~~~V~~lafs---pdg~~Las~s~D 1166 (1178)
..+..........++++|. ||++.|..++..
T Consensus 245 --~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 245 --TIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp --EEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred --EEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence 1111112223458899999 898877766543
No 267
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.96 E-value=0.0057 Score=69.60 Aligned_cols=240 Identities=8% Similarity=-0.060 Sum_probs=139.0
Q ss_pred EEEEecCCCCcccccccceeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceeccccccCCC
Q 001042 772 VQSMFSREASSRSHSFSRVRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDA 851 (1178)
Q Consensus 772 ~~~aFSpdg~~las~~~dI~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s~d~ 851 (1178)
.|.+..+++.++.+....|+..+.++.. ....+.+ ......++|.+ .++
T Consensus 37 ~C~~~~~~~~ll~~~~~~I~~i~~~g~~-------------------~~~~~~~-~~~~~~l~~d~-----------~~~ 85 (349)
T 3v64_C 37 SCKALGPEPVLLFANRIDIRQVLPHRSE-------------------YTLLLNN-LENAIALDFHH-----------RRE 85 (349)
T ss_dssp CEEESSSCCEEEEECBSCEEEECTTSCC-------------------EEEEECS-CSCEEEEEEET-----------TTT
T ss_pred cccccccCceeEeecccceEEEeCCCCe-------------------eEEeecC-CCceEEEEEec-----------ccc
Confidence 3445555444444433447777766433 2222333 23467888872 345
Q ss_pred CEEEEEeCCCcEEEEcCCCCCceeeEeec-c-cccceEEEecCCCEE-EEEeCCCcEEEEECCCCcEEEEecCCCCceEE
Q 001042 852 GFFISGSTDCLVKIWDPSLRGSELRATLK-G-HTRTVRAINSDRGKV-VSGSDDQSVLVWDKQTSQLLEELKGHDAQVSC 928 (1178)
Q Consensus 852 ~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~-~-h~~~V~~~s~d~~~l-~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~ 928 (1178)
.++++-...+.|..++.+. ........ + ....-.++.+.+..| ++-...+.|.+.+.+.......+...-.....
T Consensus 86 ~ly~~D~~~~~I~r~~~~g--~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~ 163 (349)
T 3v64_C 86 LVFWSDVTLDRILRANLNG--SNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRA 163 (349)
T ss_dssp EEEEEETTTTEEEEEETTS--CSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEE
T ss_pred EEEEEeccCCceEEEecCC--CCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcce
Confidence 5555666678899999763 22222222 1 112223567655544 55556788999998755433334344456788
Q ss_pred EEEe-CCCeEE-EEeCC-CeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEe-CCCeEEEEECCCCceEEEEec
Q 001042 929 VRML-SGERVL-TASHD-GTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGG-RDAVANIWDIRAGRQMHKFLG 1004 (1178)
Q Consensus 929 l~~~-~~~~l~-sgs~d-g~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs-~dg~I~lwD~~~~~~~~~~~~ 1004 (1178)
+++. .+..++ +-..+ +.|...++............-.....+++++++..|..+. ..+.|..+|+........+..
T Consensus 164 iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~ 243 (349)
T 3v64_C 164 IALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQ 243 (349)
T ss_dssp EEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred EEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeC
Confidence 8888 345444 44444 7888888765433222223345678999998776666554 567899999875443333333
Q ss_pred CCccEEEEEEcCCEEEEE-eCCCcEEEEEcCCCeeeeEecc
Q 001042 1005 HTKWIRSIRMDRDTVITG-SDDWTARMWSISRGTCDAVLAC 1044 (1178)
Q Consensus 1005 ~~~~v~~l~~~~~~l~sg-s~dg~I~iwd~~~~~~~~~~~~ 1044 (1178)
.......++++.+.+..+ ...+.|..+|..+|+....+..
T Consensus 244 ~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~ 284 (349)
T 3v64_C 244 GLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRN 284 (349)
T ss_dssp SCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred CCCCceEEEEECCEEEEecCCCCeEEEEEccCCCccEEecc
Confidence 345566777766654444 4567788888666766655543
No 268
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.93 E-value=0.0022 Score=71.91 Aligned_cols=225 Identities=6% Similarity=-0.021 Sum_probs=137.9
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCcEEEEecC--------------------CCCceEEEEEeC-CCeEEEEeCCCeE
Q 001042 888 AINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKG--------------------HDAQVSCVRMLS-GERVLTASHDGTV 946 (1178)
Q Consensus 888 ~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~--------------------h~~~V~~l~~~~-~~~l~sgs~dg~V 946 (1178)
++.++++.++++..++.|..||..+++.. .+.. .......+++.+ +..++++...+.+
T Consensus 25 ~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~~i 103 (322)
T 2fp8_A 25 TFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHL 103 (322)
T ss_dssp ECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETTTEE
T ss_pred EEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECCCCE
Confidence 46778887888888999999998766543 2211 013478888884 7778888777778
Q ss_pred EEEeCCCCeEEEEec---C-CCCCEEEEEEeC-CCCEEEEEeC-----------------CCeEEEEECCCCceEEEEec
Q 001042 947 KMWDVRTDTCVATVG---R-CSSAVLCMEYDD-STGILAAGGR-----------------DAVANIWDIRAGRQMHKFLG 1004 (1178)
Q Consensus 947 ~iwd~~~~~~~~~~~---~-~~~~I~~l~~sp-~~~~l~sgs~-----------------dg~I~lwD~~~~~~~~~~~~ 1004 (1178)
..+|..++....... + .......+++++ +|+..++... +|.|..||..+++..... .
T Consensus 104 ~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~ 182 (322)
T 2fp8_A 104 SVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLL-K 182 (322)
T ss_dssp EEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEE-E
T ss_pred EEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEec-c
Confidence 899977654322111 1 123578899999 8986665432 367899998777543222 2
Q ss_pred CCccEEEEEEcC--CEEEEE-eCCCcEEEEEcCCCe--eeeEeccCCCcEEEEEEecCCCEEEEEeC----------CCc
Q 001042 1005 HTKWIRSIRMDR--DTVITG-SDDWTARMWSISRGT--CDAVLACHAGPVQCVEYSSSDRGIITGSS----------DGL 1069 (1178)
Q Consensus 1005 ~~~~v~~l~~~~--~~l~sg-s~dg~I~iwd~~~~~--~~~~~~~h~~~I~~l~~spdg~~L~sgs~----------Dg~ 1069 (1178)
.......+++++ +.++.+ +.++.|..|++.... ....+....+ ...++++++|++.++... .+.
T Consensus 183 ~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~ 261 (322)
T 2fp8_A 183 ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPK 261 (322)
T ss_dssp EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEE
T ss_pred CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccE
Confidence 223345677754 455555 556899999987421 1112211223 788999999987666544 466
Q ss_pred EEEEECCCCceEEEEEecccC----CcEEEE-ecCCCEEEEEeCCCcEEEEEcC
Q 001042 1070 LRFWENDDGGIKCVKNVTIHS----SAILSI-NAGDHWLGIGAADNSMSLFHRP 1118 (1178)
Q Consensus 1070 I~iwd~~~~~~~~~~~~~~h~----~~i~~i-s~dg~~Lasgs~Dg~I~iwd~~ 1118 (1178)
|..+|.. ++ .+..+.... ..+.++ ..++.+.++...++.|..+++.
T Consensus 262 v~~~d~~-G~--~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 262 GIKFDEF-GN--ILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp EEEECTT-SC--EEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC-
T ss_pred EEEECCC-CC--EEEEEECCCCCccccceEEEEeCCEEEEeecCCCceEEEecc
Confidence 7888764 43 233332221 223333 2455555555567889888876
No 269
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.89 E-value=0.0057 Score=70.65 Aligned_cols=214 Identities=8% Similarity=-0.071 Sum_probs=128.2
Q ss_pred cceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecc--cccceEEEecCCCEE-EEEeCCCc
Q 001042 828 GAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKG--HTRTVRAINSDRGKV-VSGSDDQS 904 (1178)
Q Consensus 828 ~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~--h~~~V~~~s~d~~~l-~sgs~dg~ 904 (1178)
.....++|.+ .++.++++-...+.|..++.+ +......... ....-.++.+.+..| ++-...+.
T Consensus 116 ~~~~gl~~d~-----------~~~~ly~~D~~~~~I~r~~~~--g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~ 182 (386)
T 3v65_B 116 ENAIALDFHH-----------RRELVFWSDVTLDRILRANLN--GSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSR 182 (386)
T ss_dssp SCEEEEEEET-----------TTTEEEEEETTTTEEEEEETT--SCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTE
T ss_pred CccEEEEEec-----------CCCeEEEEeCCCCcEEEEecC--CCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCe
Confidence 3467888872 345555666677889999976 2222222221 111223567655554 55556678
Q ss_pred EEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEE-eCC-CeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEE
Q 001042 905 VLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTA-SHD-GTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAA 981 (1178)
Q Consensus 905 I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sg-s~d-g~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~s 981 (1178)
|.+.+++.......+.........+++. .+..++.+ ..+ +.|..+++............-.....+++++++..|+.
T Consensus 183 I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~ 262 (386)
T 3v65_B 183 IEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYW 262 (386)
T ss_dssp EEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEE
T ss_pred EEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEE
Confidence 8888887554333344444567888888 45555444 344 78888888654433333333456789999987666655
Q ss_pred Ee-CCCeEEEEECCCCceEEEEecCCccEEEEEEcCCEE-EEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEE
Q 001042 982 GG-RDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTV-ITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEY 1054 (1178)
Q Consensus 982 gs-~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~~l-~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~ 1054 (1178)
+. ..+.|..+|+........+.........++++.+.+ ++-...+.|..+|..+|+....+........++++
T Consensus 263 aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v 337 (386)
T 3v65_B 263 VDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHT 337 (386)
T ss_dssp EETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred EECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEECCEEEEeeCCCCeEEEEECCCCcceEEEccCCCCCceEEE
Confidence 54 567899999875443333333445667777766644 44456778888886677766666543333344443
No 270
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.89 E-value=0.00045 Score=87.47 Aligned_cols=233 Identities=12% Similarity=-0.006 Sum_probs=127.2
Q ss_pred ceEEEEec-CCCCccccccc-----c--eeecccccc-cCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccc
Q 001042 770 SWVQSMFS-REASSRSHSFS-----R--VRKWTSDAA-NENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKRE 840 (1178)
Q Consensus 770 ~i~~~aFS-pdg~~las~~~-----d--I~vWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~ 840 (1178)
.+...+|| |||+++|.+.+ . |+++|++++ +... ..+.+ ....++|+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~------------------~~~~~---~~~~~~Ws---- 229 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA------------------DKVSG---TNGEIVWG---- 229 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC------------------CCEEE---ECSCCEEC----
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC------------------ccccC---ceeeEEEe----
Confidence 56667999 99999885432 2 899999887 4100 01111 12345565
Q ss_pred eeccccccCCCCEEEEEeCC-----CcEEEEcCCCCCceeeEeecc-cccceE--EEecCCCEEEEEeC---CCcEEEEE
Q 001042 841 VWDLVGDREDAGFFISGSTD-----CLVKIWDPSLRGSELRATLKG-HTRTVR--AINSDRGKVVSGSD---DQSVLVWD 909 (1178)
Q Consensus 841 ~~~~~~~s~d~~~Lasgs~D-----g~I~iWd~~~~~~~~~~~l~~-h~~~V~--~~s~d~~~l~sgs~---dg~I~iwd 909 (1178)
|||+.|+....| ..|.+|++......-...+.. +..... .+++||++|+..+. ...|.++|
T Consensus 230 --------pDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d 301 (751)
T 2xe4_A 230 --------PDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLD 301 (751)
T ss_dssp --------SSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEE
T ss_pred --------cCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEE
Confidence 899888877765 257788876322222222221 122222 57999999887653 45688899
Q ss_pred CCCC--cE-EEEe-cCCCCceEEEEEeCCCeEEEEeCC-----CeEEEEeCCCC-eEEE-EecCCCC--CEEEEEEeCCC
Q 001042 910 KQTS--QL-LEEL-KGHDAQVSCVRMLSGERVLTASHD-----GTVKMWDVRTD-TCVA-TVGRCSS--AVLCMEYDDST 976 (1178)
Q Consensus 910 ~~t~--~~-~~~l-~~h~~~V~~l~~~~~~~l~sgs~d-----g~V~iwd~~~~-~~~~-~~~~~~~--~I~~l~~sp~~ 976 (1178)
+.++ +. +..+ .........+.|+.++.++..+.. ..|..+|+.++ +... .+ .+.. .+..+.+. .+
T Consensus 302 ~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li-~~~~~~~l~~~~~~-~~ 379 (751)
T 2xe4_A 302 LRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLV-DHSEDVFMESIAVR-SN 379 (751)
T ss_dssp SSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEE-CCCSSEEEEEEEEC-SS
T ss_pred CCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEE-CCCCCcEEEEEEEE-CC
Confidence 9875 23 1333 344556677777767766554432 36777887652 2222 22 2222 34555554 33
Q ss_pred CEEEEEeCCCe--EEEEEC-------CCCceEEEEec-CCccEEEEE------EcCC-EEEEEeCC---CcEEEEEcCCC
Q 001042 977 GILAAGGRDAV--ANIWDI-------RAGRQMHKFLG-HTKWIRSIR------MDRD-TVITGSDD---WTARMWSISRG 1036 (1178)
Q Consensus 977 ~~l~sgs~dg~--I~lwD~-------~~~~~~~~~~~-~~~~v~~l~------~~~~-~l~sgs~d---g~I~iwd~~~~ 1036 (1178)
.++++...+|. |.++|+ .+++....+.. ....+..+. ++++ .+++.+.. +.+..+|+.++
T Consensus 380 ~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~ 459 (751)
T 2xe4_A 380 YLVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDH 459 (751)
T ss_dssp EEEEEEEETTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTC
T ss_pred EEEEEEEeCCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 44556666775 556665 33431333321 112233442 2333 34443332 35777777766
Q ss_pred e
Q 001042 1037 T 1037 (1178)
Q Consensus 1037 ~ 1037 (1178)
+
T Consensus 460 ~ 460 (751)
T 2xe4_A 460 S 460 (751)
T ss_dssp C
T ss_pred c
Confidence 5
No 271
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.86 E-value=0.075 Score=65.18 Aligned_cols=358 Identities=8% Similarity=-0.040 Sum_probs=180.0
Q ss_pred cceEEEEecCCCCcccccccc---eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceeccc
Q 001042 769 RSWVQSMFSREASSRSHSFSR---VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLV 845 (1178)
Q Consensus 769 ~~i~~~aFSpdg~~las~~~d---I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~ 845 (1178)
.....+|+.+.+..+..+... |.+-+.++.. ....+.+.-..-..|++.
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~-------------------~~~l~~~~l~~P~~Iavd--------- 135 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-------------------RKVLFWQELDQPRAIALD--------- 135 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-------------------CEEEECSSCSCCCCEEEE---------
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC-------------------EEEEEeCCCCCCceEEEe---------
Confidence 345667999876655555433 7777777543 111222233345567775
Q ss_pred cccCCCCEEEEEeC--CCcEEEEcCCCCCceeeEeecccccce--EEEecCCCEEEEE-eCCCcEEEEECCCCcEEEEec
Q 001042 846 GDREDAGFFISGST--DCLVKIWDPSLRGSELRATLKGHTRTV--RAINSDRGKVVSG-SDDQSVLVWDKQTSQLLEELK 920 (1178)
Q Consensus 846 ~~s~d~~~Lasgs~--Dg~I~iWd~~~~~~~~~~~l~~h~~~V--~~~s~d~~~l~sg-s~dg~I~iwd~~t~~~~~~l~ 920 (1178)
|.+..|..+.. .+.|...+++ +..........-..- .+++++++.|..+ +..+.|...|++.........
T Consensus 136 ---p~~g~ly~tD~g~~~~I~r~~~d--G~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~ 210 (619)
T 3s94_A 136 ---PSSGFMYWTDWGEVPKIERAGMD--GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK 210 (619)
T ss_dssp ---TTTTEEEEEECSSSCEEEEEETT--SCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC----
T ss_pred ---cCCCeEEEeccCCCCEEEEEECC--CCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEe
Confidence 54444443332 3566666655 322222221111222 3567766666555 456788888887543322222
Q ss_pred CCCCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCC-------------------------EEEEEE---
Q 001042 921 GHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSA-------------------------VLCMEY--- 972 (1178)
Q Consensus 921 ~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~-------------------------I~~l~~--- 972 (1178)
+.......+++..+..+++-..++.|...|..+++....+...... ...+++
T Consensus 211 ~~~~~P~gi~~~~~~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~ 290 (619)
T 3s94_A 211 GSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSP 290 (619)
T ss_dssp -----CCCEEESSSEEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECS
T ss_pred CCCCCceEEEEeCCEEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCC
Confidence 2222334566654544445456778888888776543332111000 001111
Q ss_pred --------eC-------CC--------CEEEEEeCCCeEEEEECCCCceEE-EEe-cCCccEEEEEEcC--CEEEEEe-C
Q 001042 973 --------DD-------ST--------GILAAGGRDAVANIWDIRAGRQMH-KFL-GHTKWIRSIRMDR--DTVITGS-D 1024 (1178)
Q Consensus 973 --------sp-------~~--------~~l~sgs~dg~I~lwD~~~~~~~~-~~~-~~~~~v~~l~~~~--~~l~sgs-~ 1024 (1178)
.| ++ .+|+.+ ..+.|+..++....... .+. ..-..+.+++++. +.|..+. .
T Consensus 291 ~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~-~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~ 369 (619)
T 3s94_A 291 VKPFYQCACPTGVKLLENGKTCKDGATELLLLA-RRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDE 369 (619)
T ss_dssp STTSEEEECCTTCCBCTTSSCBCSSCSEEEEEE-ESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETT
T ss_pred CCCCceEeCCchheecccCcccCCCCceEEEEE-cccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCC
Confidence 11 11 122222 23455666665443211 111 1123567788864 4555444 5
Q ss_pred CCcEEEEEcCCCeeeeEeccCCCcEEEEEEecC-CCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEEecCCCEE
Q 001042 1025 DWTARMWSISRGTCDAVLACHAGPVQCVEYSSS-DRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSINAGDHWL 1103 (1178)
Q Consensus 1025 dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd-g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~L 1103 (1178)
.+.|+.++.........+...-....+++++.. ++..++-+..+.|.+.+++......+..-......-.++.|....+
T Consensus 370 ~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~l 449 (619)
T 3s94_A 370 VRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYM 449 (619)
T ss_dssp TTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEE
T ss_pred CCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcE
Confidence 778888887654333333333356778999974 4455565677889999987653222221111222234556754444
Q ss_pred EEEeC--CCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeC-CCcEEEEECC
Q 001042 1104 GIGAA--DNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGR-NGLLRLWEAT 1175 (1178)
Q Consensus 1104 asgs~--Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~-Dg~V~IWdv~ 1175 (1178)
..... .+.|...+++ |... ..+. ...-...+.++++++++.|..+.. .+.|...+++
T Consensus 450 y~tD~g~~~~I~r~~~d----------G~~~---~~l~--~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~d 509 (619)
T 3s94_A 450 YWTDWGEIPKIERAALD----------GSDR---VVLV--NTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTD 509 (619)
T ss_dssp EEEECSSSCEEEEEETT----------SCSC---EEEE--CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESS
T ss_pred EEecCCCCCEEEEEccC----------CCcc---EEEE--eCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecC
Confidence 43332 3566666654 2211 1111 122345788999998777777754 4567777764
No 272
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.81 E-value=0.023 Score=63.48 Aligned_cols=220 Identities=8% Similarity=-0.065 Sum_probs=127.2
Q ss_pred CCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEE-eCCCeEEEEECCC---CceEE-EEecCCccEEEEEEc--
Q 001042 943 DGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAG-GRDAVANIWDIRA---GRQMH-KFLGHTKWIRSIRMD-- 1015 (1178)
Q Consensus 943 dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sg-s~dg~I~lwD~~~---~~~~~-~~~~~~~~v~~l~~~-- 1015 (1178)
...|+..|+.+.+....+. ......+++|++.++.++.+ ..++.|..+|+.+ +.... .+.........++++
T Consensus 9 ~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~ 87 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 87 (316)
T ss_dssp BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeec
Confidence 4568889998876655543 34567899999876555544 4568999999876 12222 222222345667764
Q ss_pred CCEE-EEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeC-C-CcEEEEECCCCceEEEEEecccCCc
Q 001042 1016 RDTV-ITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSS-D-GLLRFWENDDGGIKCVKNVTIHSSA 1092 (1178)
Q Consensus 1016 ~~~l-~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~-D-g~I~iwd~~~~~~~~~~~~~~h~~~ 1092 (1178)
++.+ ++-..++.|.++|...................++++|.+..|..+.. . +.|...+.+......+.........
T Consensus 88 ~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~ 167 (316)
T 1ijq_A 88 HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN 167 (316)
T ss_dssp TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEE
T ss_pred CCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCce
Confidence 3444 45456789999998654333333333456789999997665554443 3 6788888765432222211122222
Q ss_pred EEEEecCCCEEEEE-eCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEE
Q 001042 1093 ILSINAGDHWLGIG-AADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRL 1171 (1178)
Q Consensus 1093 i~~is~dg~~Lasg-s~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~I 1171 (1178)
-.++++++..|..+ +..+.|..+|.... .. +.+............+++. .+.+.++....+.|..
T Consensus 168 gla~d~~~~~lY~~D~~~~~I~~~d~dg~----------~~---~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~ 233 (316)
T 1ijq_A 168 GITLDLLSGRLYWVDSKLHSISSIDVNGG----------NR---KTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFS 233 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSC----------SC---EEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEE
T ss_pred EEEEeccCCEEEEEECCCCeEEEEecCCC----------ce---EEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEE
Confidence 35667766665554 45678999998532 11 1111111112235567774 3555555556778888
Q ss_pred EECCCC
Q 001042 1172 WEATIN 1177 (1178)
Q Consensus 1172 Wdv~tg 1177 (1178)
++..+|
T Consensus 234 ~~~~~g 239 (316)
T 1ijq_A 234 ANRLTG 239 (316)
T ss_dssp EETTTC
T ss_pred EeCCCC
Confidence 887655
No 273
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.81 E-value=0.0098 Score=67.60 Aligned_cols=220 Identities=9% Similarity=-0.034 Sum_probs=132.6
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEE-EEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEE
Q 001042 895 KVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVL-TASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEY 972 (1178)
Q Consensus 895 ~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~-sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~ 972 (1178)
.|+.+. ...|+..++.......... .......++|. .++.++ +-...+.|..++...+.....+.........+++
T Consensus 46 ~ll~~~-~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glav 123 (349)
T 3v64_C 46 VLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAV 123 (349)
T ss_dssp EEEEEC-BSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEE
T ss_pred eeEeec-ccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEE
Confidence 344333 3558888887655544444 34457889998 455555 4456789999998876544444333345678999
Q ss_pred eCCCCEE-EEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEcC--CEEEEE-eCC-CcEEEEEcCCCeeeeEec-cCC
Q 001042 973 DDSTGIL-AAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR--DTVITG-SDD-WTARMWSISRGTCDAVLA-CHA 1046 (1178)
Q Consensus 973 sp~~~~l-~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~--~~l~sg-s~d-g~I~iwd~~~~~~~~~~~-~h~ 1046 (1178)
++.+..| ++-...+.|.+.++..................+++++ ..+... ..+ +.|..+++... ....+. ..-
T Consensus 124 d~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~~ 202 (349)
T 3v64_C 124 DWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRIIADTHL 202 (349)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEESCCSSC
T ss_pred ecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC-CcEEEEECCC
Confidence 9855544 5555678999999875544333334445678888874 344444 344 77888887543 333332 233
Q ss_pred CcEEEEEEecCCCEEEEE-eCCCcEEEEECCCCceEEEEEecccCCcEEEEe-cCCCEEEEEeCCCcEEEEEcCC
Q 001042 1047 GPVQCVEYSSSDRGIITG-SSDGLLRFWENDDGGIKCVKNVTIHSSAILSIN-AGDHWLGIGAADNSMSLFHRPQ 1119 (1178)
Q Consensus 1047 ~~I~~l~~spdg~~L~sg-s~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is-~dg~~Lasgs~Dg~I~iwd~~~ 1119 (1178)
...+.+++++++..|..+ +..+.|..+|.+......+.. ........+. ..+...++-...+.|..++..+
T Consensus 203 ~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~--~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~ 275 (349)
T 3v64_C 203 FWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS--QGLPHPFAITVFEDSLYWTDWHTKSINSANKFT 275 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--SSCSSEEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred CCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEe--CCCCCceEEEEECCEEEEecCCCCeEEEEEccC
Confidence 467899999876666554 456789999987653232221 1122222222 3445555555667788887543
No 274
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.79 E-value=0.047 Score=59.72 Aligned_cols=252 Identities=11% Similarity=0.144 Sum_probs=162.1
Q ss_pred CCcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEeCCCeEEE
Q 001042 860 DCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLT 939 (1178)
Q Consensus 860 Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~~~~~l~s 939 (1178)
+.+|.|-|+........+... -...| ++|..+.+|.-. ..++.|+|+++.+.++...- ...|.-=.|-+.+.++.
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi~-AdsAI--MnP~~~ViALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~~L~l 122 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPIS-ADSAI--MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNTVAL 122 (365)
T ss_dssp EEEEEEEETTSTTSCEEEECC-CSEEE--ECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSEEEE
T ss_pred CCEEEEEECCCCCCccccccc-cceee--eCCCccEEEEec-CCeEEEechHHhhhhcceec-CCccEEEEecCCCeEEE
Confidence 347888888743332222222 22222 488888777665 68999999999988888764 45666666777777776
Q ss_pred EeCCCeEEEEeCCC-CeEEEEecCC----CCCEEEEEEeCCCCEEEEEeC-------CCeEEEEECCCCceEEEEecCCc
Q 001042 940 ASHDGTVKMWDVRT-DTCVATVGRC----SSAVLCMEYDDSTGILAAGGR-------DAVANIWDIRAGRQMHKFLGHTK 1007 (1178)
Q Consensus 940 gs~dg~V~iwd~~~-~~~~~~~~~~----~~~I~~l~~sp~~~~l~sgs~-------dg~I~lwD~~~~~~~~~~~~~~~ 1007 (1178)
.+ +..|+-|++.. ..+.+.+..| ...|..-..+++.++++..+- .|.+.+|..+.+ .-+.+.+|..
T Consensus 123 VT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa 200 (365)
T 2xzh_A 123 VT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAA 200 (365)
T ss_dssp EE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEE
T ss_pred Ec-CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccceeeeeee
Confidence 66 45799999975 3455555544 456888888999998876552 367888887643 4556677777
Q ss_pred cEEEEEEcCC-----EEEEEeC---CCcEEEEEcCCC---ee------eeEec---cCCCcEEEEEEecCCCEEEEEeCC
Q 001042 1008 WIRSIRMDRD-----TVITGSD---DWTARMWSISRG---TC------DAVLA---CHAGPVQCVEYSSSDRGIITGSSD 1067 (1178)
Q Consensus 1008 ~v~~l~~~~~-----~l~sgs~---dg~I~iwd~~~~---~~------~~~~~---~h~~~I~~l~~spdg~~L~sgs~D 1067 (1178)
.-..+..+++ .++.+.. .+.+++.++... .. +..+- ...+-..++..|+.-..+..-+.-
T Consensus 201 ~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~ 280 (365)
T 2xzh_A 201 SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKY 280 (365)
T ss_dssp EEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETT
T ss_pred eeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCC
Confidence 6666666544 2332222 258999988432 11 11111 123445678888888888888999
Q ss_pred CcEEEEECCCCceEEEEEecccCCcEE--EEecCCCEEEEEeCCCcEEEEEcCCC
Q 001042 1068 GLLRFWENDDGGIKCVKNVTIHSSAIL--SINAGDHWLGIGAADNSMSLFHRPQE 1120 (1178)
Q Consensus 1068 g~I~iwd~~~~~~~~~~~~~~h~~~i~--~is~dg~~Lasgs~Dg~I~iwd~~~~ 1120 (1178)
|.|.+||+.++ .++..-+-....|. +-+....-++.....|.|.--.++..
T Consensus 281 G~ihlyDleTg--t~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 281 GYIHLYDLETG--TCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp SEEEEEETTTC--CEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTT
T ss_pred cEEEEEEcccC--cEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEECcc
Confidence 99999999999 45544444444443 33334344444557777776666543
No 275
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.76 E-value=0.036 Score=64.13 Aligned_cols=224 Identities=8% Similarity=-0.041 Sum_probs=139.3
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEE-EEeCCCeEEEEeCCCC----eEEEEecCCCCCEE
Q 001042 895 KVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVL-TASHDGTVKMWDVRTD----TCVATVGRCSSAVL 968 (1178)
Q Consensus 895 ~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~-sgs~dg~V~iwd~~~~----~~~~~~~~~~~~I~ 968 (1178)
+|+.+. ...|+..++.......... ....+..++|. .++.++ +-..++.|..+++... .....+........
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 344443 4678888888765544443 45678899998 445554 4456788999998752 23333433456778
Q ss_pred EEEEeCCC-CEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEcC--CEEEEEeC--CCcEEEEEcCCCeeeeEec
Q 001042 969 CMEYDDST-GILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR--DTVITGSD--DWTARMWSISRGTCDAVLA 1043 (1178)
Q Consensus 969 ~l~~sp~~-~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~--~~l~sgs~--dg~I~iwd~~~~~~~~~~~ 1043 (1178)
.+++++.+ ++.++-...+.|.+.|+........+.........+++++ ..|+.... .+.|...++..........
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~ 242 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 242 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE
Confidence 99999854 4445555678999999876655444444555678899875 35555442 4788888876443333333
Q ss_pred cCCCcEEEEEEecCCCEEEEEe-CCCcEEEEECCCCceEEEEEecccCCcEEEEecC-CCEEEEEeCCCcEEEEEcCCC
Q 001042 1044 CHAGPVQCVEYSSSDRGIITGS-SDGLLRFWENDDGGIKCVKNVTIHSSAILSINAG-DHWLGIGAADNSMSLFHRPQE 1120 (1178)
Q Consensus 1044 ~h~~~I~~l~~spdg~~L~sgs-~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is~d-g~~Lasgs~Dg~I~iwd~~~~ 1120 (1178)
..-...+.+++++++..|..+. ..+.|..+|++......+......-....++..+ +..+++-...+.|..+|..++
T Consensus 243 ~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G 321 (400)
T 3p5b_L 243 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG 321 (400)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSC
T ss_pred CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCC
Confidence 3345789999998777766554 5678999998765444443322222333444433 445555556688888886544
No 276
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.76 E-value=0.036 Score=61.83 Aligned_cols=223 Identities=9% Similarity=-0.033 Sum_probs=134.2
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEE-EEeCCCeEEEEeCCC----CeEEEEecCCCCCEEE
Q 001042 896 VVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVL-TASHDGTVKMWDVRT----DTCVATVGRCSSAVLC 969 (1178)
Q Consensus 896 l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~-sgs~dg~V~iwd~~~----~~~~~~~~~~~~~I~~ 969 (1178)
|+.+.. ..|+..|+.+.+....+. .......++|. .++.++ +-..++.|..++..+ ......+...-.....
T Consensus 4 ll~~~~-~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g 81 (316)
T 1ijq_A 4 LFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 81 (316)
T ss_dssp EEEECB-SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred EEEECC-CeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCE
Confidence 444433 568999998877655544 34567889998 445554 555678999999876 2222223223345678
Q ss_pred EEEeCCCCEE-EEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEcC--CEEEEEeC-C-CcEEEEEcCCCeeeeEe-c
Q 001042 970 MEYDDSTGIL-AAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR--DTVITGSD-D-WTARMWSISRGTCDAVL-A 1043 (1178)
Q Consensus 970 l~~sp~~~~l-~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~--~~l~sgs~-d-g~I~iwd~~~~~~~~~~-~ 1043 (1178)
+++++.+..| ++-..++.|.++|...................+++++ ..++.+.. . +.|...++. |+....+ .
T Consensus 82 lavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~ 160 (316)
T 1ijq_A 82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVT 160 (316)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEEC
T ss_pred EEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEE
Confidence 9999755545 4545678999999875443333333445678888864 45544443 2 688888875 3333333 2
Q ss_pred cCCCcEEEEEEecCCCEEEEEe-CCCcEEEEECCCCceEEEEEecccCCcEEEEe-cCCCEEEEEeCCCcEEEEEcCCCc
Q 001042 1044 CHAGPVQCVEYSSSDRGIITGS-SDGLLRFWENDDGGIKCVKNVTIHSSAILSIN-AGDHWLGIGAADNSMSLFHRPQER 1121 (1178)
Q Consensus 1044 ~h~~~I~~l~~spdg~~L~sgs-~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is-~dg~~Lasgs~Dg~I~iwd~~~~~ 1121 (1178)
..-...+.+++++++..|..+. ..+.|..+|.+......+............+. ..+...++-...+.|..++..+++
T Consensus 161 ~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEECCEEEEEECCCCeEEEEeCCCCc
Confidence 2345678999998877665554 56789999998654343333211112223332 235555555567788888875443
No 277
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.76 E-value=0.041 Score=61.74 Aligned_cols=267 Identities=9% Similarity=0.043 Sum_probs=138.9
Q ss_pred ccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEe-ec--ccccceEEEecCCCEEEEEeCCC
Q 001042 827 AGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRAT-LK--GHTRTVRAINSDRGKVVSGSDDQ 903 (1178)
Q Consensus 827 ~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~-l~--~h~~~V~~~s~d~~~l~sgs~dg 903 (1178)
...+.+|.|. +++..++ ++.+|.|.... + .+...... .. .....+.++..+++.++.++.+|
T Consensus 35 ~~~~~~v~~~------------~~~~~~~-~G~~g~i~~s~-D-gG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~g 99 (327)
T 2xbg_A 35 TATILDMSFI------------DRHHGWL-VGVNATLMETR-D-GGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGEPP 99 (327)
T ss_dssp SSCEEEEEES------------SSSCEEE-EETTTEEEEES-S-TTSSCEECCCCCSCCCCEEEEEEEETTEEEEEEETT
T ss_pred CCcEEEEEEC------------CCCcEEE-EcCCCeEEEeC-C-CCCCCeECCCCCCCCCccEEEEEecCCeEEEEECCC
Confidence 3468888885 5566666 45577654332 2 22222111 11 12334554433334555556667
Q ss_pred cEEEEECCCCcEEEEec---CCCCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEE-ecCCCCCEEEEEEeCCCCEE
Q 001042 904 SVLVWDKQTSQLLEELK---GHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVAT-VGRCSSAVLCMEYDDSTGIL 979 (1178)
Q Consensus 904 ~I~iwd~~t~~~~~~l~---~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~-~~~~~~~I~~l~~sp~~~~l 979 (1178)
.|.. ..+.|+.-.... .+...+..+.+.++..++.++.+|.|.. ....|+.-.. .......+..+++.+++.++
T Consensus 100 ~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~ 177 (327)
T 2xbg_A 100 IMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYV 177 (327)
T ss_dssp EEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEE
T ss_pred eEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEE
Confidence 5543 333344323222 2334577777764445555556665432 1223433222 23445678999999998887
Q ss_pred EEEeCCCeEEEEEC--CCCceEEEEecCCccEEEEEEcC-CEEEEEeCCCcEEEEEcCCCeeeeEec-c---CCCcEEEE
Q 001042 980 AAGGRDAVANIWDI--RAGRQMHKFLGHTKWIRSIRMDR-DTVITGSDDWTARMWSISRGTCDAVLA-C---HAGPVQCV 1052 (1178)
Q Consensus 980 ~sgs~dg~I~lwD~--~~~~~~~~~~~~~~~v~~l~~~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~-~---h~~~I~~l 1052 (1178)
+++...+..+-+|- .+.+.+. ......+..+.+++ +.++.++.+|.+++.+...++.-..+. . +...+.++
T Consensus 178 ~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v 255 (327)
T 2xbg_A 178 AVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDL 255 (327)
T ss_dssp EEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEE
T ss_pred EEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEE
Confidence 76654444444442 2333331 23455677888743 356667778888776533243322222 1 22358899
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCceEEEEEec---ccCCcEEEEec-CCCEEEEEeCCCcEEEEE
Q 001042 1053 EYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVT---IHSSAILSINA-GDHWLGIGAADNSMSLFH 1116 (1178)
Q Consensus 1053 ~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~---~h~~~i~~is~-dg~~Lasgs~Dg~I~iwd 1116 (1178)
++.+++..++++ .+|.| ++..+.|+ .-.... .....+.++.. ++..+++++.+|.|.-++
T Consensus 256 ~~~~~~~~~~~g-~~g~i-~~S~DgG~--tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 256 AYRTPNEVWLAG-GAGAL-LCSQDGGQ--TWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYV 319 (327)
T ss_dssp EESSSSCEEEEE-STTCE-EEESSTTS--SCEECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEEC
T ss_pred EecCCCEEEEEe-CCCeE-EEeCCCCc--ccEEcCccCCCCCCeEEEEEECCCceEEEcCCceEEEEc
Confidence 999887766665 47766 45555552 111222 12233333321 344466667888776655
No 278
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.72 E-value=0.0046 Score=72.53 Aligned_cols=150 Identities=5% Similarity=-0.002 Sum_probs=95.4
Q ss_pred ceEEEEEe--CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCC-C----eEEEEECCCCc
Q 001042 925 QVSCVRML--SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRD-A----VANIWDIRAGR 997 (1178)
Q Consensus 925 ~V~~l~~~--~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~d-g----~I~lwD~~~~~ 997 (1178)
....++++ +++.|+++...+.|+.+|..++...... ........++++++++.|+++... + .+..++. .+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCc
Confidence 45678888 3566777766689999999877655444 345668899999999966666542 1 3444443 332
Q ss_pred eE--EEEecCCccEEEEEEcC---CEEEEEeCCCcEEEEEcCCCeeeeEec-cCCCcEEEEEEecCCCEE-EEEeCCCcE
Q 001042 998 QM--HKFLGHTKWIRSIRMDR---DTVITGSDDWTARMWSISRGTCDAVLA-CHAGPVQCVEYSSSDRGI-ITGSSDGLL 1070 (1178)
Q Consensus 998 ~~--~~~~~~~~~v~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~-~h~~~I~~l~~spdg~~L-~sgs~Dg~I 1070 (1178)
.. ..+. .......+++++ ..+++-..++.|..++...+....... ........++|+|+|++| ++-...+.|
T Consensus 216 ~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I 294 (430)
T 3tc9_A 216 FKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI 294 (430)
T ss_dssp SCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred eeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence 21 2222 123345666754 344455567889999987765422222 122457899999999954 444567889
Q ss_pred EEEECCC
Q 001042 1071 RFWENDD 1077 (1178)
Q Consensus 1071 ~iwd~~~ 1077 (1178)
..++.+.
T Consensus 295 ~~~~~d~ 301 (430)
T 3tc9_A 295 LRSDYDW 301 (430)
T ss_dssp EEEEEET
T ss_pred EEEeCCc
Confidence 9987653
No 279
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.72 E-value=0.019 Score=64.29 Aligned_cols=206 Identities=9% Similarity=-0.067 Sum_probs=125.0
Q ss_pred cceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecc-cccceEEEecCCC-EEEEEeCCCcE
Q 001042 828 GAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKG-HTRTVRAINSDRG-KVVSGSDDQSV 905 (1178)
Q Consensus 828 ~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~-h~~~V~~~s~d~~-~l~sgs~dg~I 905 (1178)
....+++|.+ .++.+.++-...+.|..++.+...........+ ....-.++.+.+. ..++-...+.|
T Consensus 35 ~~~~~ld~d~-----------~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I 103 (318)
T 3sov_A 35 EDAAAVDFVF-----------SHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRI 103 (318)
T ss_dssp EEEEEEEEEG-----------GGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred CccEEEEEEe-----------CCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEE
Confidence 3466888873 345666676778899999976322111111111 1222235666444 44555567889
Q ss_pred EEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEe--CCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEE
Q 001042 906 LVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTAS--HDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAG 982 (1178)
Q Consensus 906 ~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs--~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sg 982 (1178)
.+++.+.................+++. .+..++.+. ..+.|...++............-.....+++++++..|+.+
T Consensus 104 ~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~a 183 (318)
T 3sov_A 104 EVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWA 183 (318)
T ss_dssp EEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred EEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEE
Confidence 999987544333333445567888887 345555554 35788888876433333333334567899999976666655
Q ss_pred e-CCCeEEEEECCCCceEEEEecCCccEEEEEEcCCEE-EEEeCCCcEEEEEcCCCeeeeEecc
Q 001042 983 G-RDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTV-ITGSDDWTARMWSISRGTCDAVLAC 1044 (1178)
Q Consensus 983 s-~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~~l-~sgs~dg~I~iwd~~~~~~~~~~~~ 1044 (1178)
. ..+.|..+|+..........+.......++++++.+ ++-...+.|..+|..+|+....+..
T Consensus 184 D~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~~~~~i~~ 247 (318)
T 3sov_A 184 DAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHS 247 (318)
T ss_dssp ETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred ECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCCceEEEeC
Confidence 4 567899999875433322333445667788776644 4444667898899877776666543
No 280
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.71 E-value=0.048 Score=59.67 Aligned_cols=224 Identities=8% Similarity=0.112 Sum_probs=148.0
Q ss_pred CCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEE-cCCEEEE
Q 001042 943 DGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM-DRDTVIT 1021 (1178)
Q Consensus 943 dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~-~~~~l~s 1021 (1178)
+..|.+.|+.++.......- ...+...+|..+.+|.-. ...+.++|+++...++.+.-. ..|.--.| +++.|+.
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi---~AdsAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~-e~VvfWkWis~~~L~l 122 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNTVAL 122 (365)
T ss_dssp EEEEEEEETTSTTSCEEEEC---CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCEEEEEECSSSEEEE
T ss_pred CCEEEEEECCCCCCcccccc---ccceeeeCCCccEEEEec-CCeEEEechHHhhhhcceecC-CccEEEEecCCCeEEE
Confidence 34788889887654322111 112445688888887765 688999999999999888654 46667777 7777776
Q ss_pred EeCCCcEEEEEcCC-CeeeeEeccCC----CcEEEEEEecCCCEEEEEe-------CCCcEEEEECCCCceEEEEEeccc
Q 001042 1022 GSDDWTARMWSISR-GTCDAVLACHA----GPVQCVEYSSSDRGIITGS-------SDGLLRFWENDDGGIKCVKNVTIH 1089 (1178)
Q Consensus 1022 gs~dg~I~iwd~~~-~~~~~~~~~h~----~~I~~l~~spdg~~L~sgs-------~Dg~I~iwd~~~~~~~~~~~~~~h 1089 (1178)
.+. ..|+-|++.. ..+.+.+..|. ..|..-..+++.++++..| -.|.+.+|..+.+ ..+.++||
T Consensus 123 VT~-taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~---~sQ~ieGh 198 (365)
T 2xzh_A 123 VTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK---VSQPIEGH 198 (365)
T ss_dssp EES-SEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT---EEEEECCS
T ss_pred EcC-CcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc---ccceeeee
Confidence 654 4899999975 35566665543 4677788899999876544 2367889998875 56677888
Q ss_pred CCcEEEEecCC-----CEEEEEeC---CCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEE
Q 001042 1090 SSAILSINAGD-----HWLGIGAA---DNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRIC 1161 (1178)
Q Consensus 1090 ~~~i~~is~dg-----~~Lasgs~---Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~La 1161 (1178)
...-..+..+| ..++.+.. .+.++|-++....... ..-.....++...+....+--.++..|+.-..+.
T Consensus 199 aa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~---~~f~kk~vdi~fppea~~DFPVamqvs~kygviy 275 (365)
T 2xzh_A 199 AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN---QPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVF 275 (365)
T ss_dssp EEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTC---CCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEE
T ss_pred eeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCC---CCcccccceeeCCccccCCceEEEEecccCCEEE
Confidence 87766663332 23343333 2588888885321000 0000111122233334455566888999888999
Q ss_pred EEeCCCcEEEEECCCCC
Q 001042 1162 SGGRNGLLRLWEATINI 1178 (1178)
Q Consensus 1162 s~s~Dg~V~IWdv~tg~ 1178 (1178)
.-+.-|.|.++|++||.
T Consensus 276 viTK~G~ihlyDleTgt 292 (365)
T 2xzh_A 276 LITKYGYIHLYDLETGT 292 (365)
T ss_dssp EEETTSEEEEEETTTCC
T ss_pred EEeCCcEEEEEEcccCc
Confidence 99999999999999984
No 281
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.70 E-value=0.028 Score=64.76 Aligned_cols=224 Identities=9% Similarity=-0.008 Sum_probs=135.4
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCceeeEeecccccce-EEEecCCCEE-EEEeCCCcEEEEECCCCcEEEEecCCCCceEE
Q 001042 851 AGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTV-RAINSDRGKV-VSGSDDQSVLVWDKQTSQLLEELKGHDAQVSC 928 (1178)
Q Consensus 851 ~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V-~~~s~d~~~l-~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~ 928 (1178)
..+|+.+.. ..|+..++. +........+...++ .++.+.++.| ++-...+.|..++...+.....+.........
T Consensus 87 ~~~l~~~~~-~~I~~i~~~--~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~g 163 (386)
T 3v65_B 87 EPVLLFANR-IDIRQVLPH--RSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGG 163 (386)
T ss_dssp CCEEEEECB-SCEEEECTT--SCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCC
T ss_pred cceeEeecC-ccceeeccC--CCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccE
Confidence 344444443 568888876 333333333333222 2556655555 45556788999998876554444433344566
Q ss_pred EEEe--CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEe-CC-CeEEEEECCCCceEEEEec
Q 001042 929 VRML--SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGG-RD-AVANIWDIRAGRQMHKFLG 1004 (1178)
Q Consensus 929 l~~~--~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs-~d-g~I~lwD~~~~~~~~~~~~ 1004 (1178)
+++. .+..+++-...+.|.+.++........+...-.....++++|.+..|+.+. .+ +.|..+++...........
T Consensus 164 lavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~ 243 (386)
T 3v65_B 164 LAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADT 243 (386)
T ss_dssp EEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred EEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEEC
Confidence 7776 344555666678899998875544444444446779999999776666554 34 6888888865443333333
Q ss_pred CCccEEEEEEc--CCEEEEE-eCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 001042 1005 HTKWIRSIRMD--RDTVITG-SDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDG 1078 (1178)
Q Consensus 1005 ~~~~v~~l~~~--~~~l~sg-s~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~ 1078 (1178)
.-.....++++ ++.|..+ +..+.|..+|+........+........++++. .+..+++....+.|..++..+|
T Consensus 244 ~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G 319 (386)
T 3v65_B 244 HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTG 319 (386)
T ss_dssp SCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred CCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CCEEEEeeCCCCeEEEEECCCC
Confidence 44567888885 4455444 456789999976443333333334456778883 4555666667788888886555
No 282
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.70 E-value=0.23 Score=65.14 Aligned_cols=359 Identities=10% Similarity=0.056 Sum_probs=195.9
Q ss_pred CcceEEEEecCC------CCccccccc-c--eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeec
Q 001042 768 GRSWVQSMFSRE------ASSRSHSFS-R--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTK 838 (1178)
Q Consensus 768 ~~~i~~~aFSpd------g~~las~~~-d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~ 838 (1178)
...|.|++++|. ++++|.|.. | |+|+++++.+.. ....+.+ +....++.+..
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~-----------------~~~~L~~-~~~p~si~l~~- 613 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELL-----------------HKEMLGG-EIIPRSILMTT- 613 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEE-----------------EEEECCS-SCCEEEEEEEE-
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeE-----------------EEEECCC-CCCCcEEEEEE-
Confidence 346888888764 367888885 5 999998753310 1112211 12334444431
Q ss_pred cceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeE---eecccccceE--EEecCCCEEEEEeCCCcEEEEECCCC
Q 001042 839 REVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRA---TLKGHTRTVR--AINSDRGKVVSGSDDQSVLVWDKQTS 913 (1178)
Q Consensus 839 ~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~---~l~~h~~~V~--~~s~d~~~l~sgs~dg~I~iwd~~t~ 913 (1178)
+ ....+|..|-.||.+.-+.++...+.+.. ..-|. .++. .+...+..-+.+..+....++.-+ +
T Consensus 614 --------~-~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~-~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~ 682 (1158)
T 3ei3_A 614 --------F-ESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGT-QPTVLRTFRSLSTTNVFACSDRPTVIYSSN-H 682 (1158)
T ss_dssp --------E-TTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCS-SCCEEEEEESSSCEEEEEESSSCEEEEESS-S
T ss_pred --------e-CCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCC-CceEEEEEeeCCceeEEEECCCCEEEEEcC-C
Confidence 1 23467889999998866655432322221 22232 2332 344444433333334444455433 3
Q ss_pred cEEEEecCCCCceE-EEEEeC---CCeEEEEeCCCeEEEEeCCCCe--EEEEecCCCCCEEEEEEeCCCCEEEEEeCC--
Q 001042 914 QLLEELKGHDAQVS-CVRMLS---GERVLTASHDGTVKMWDVRTDT--CVATVGRCSSAVLCMEYDDSTGILAAGGRD-- 985 (1178)
Q Consensus 914 ~~~~~l~~h~~~V~-~l~~~~---~~~l~sgs~dg~V~iwd~~~~~--~~~~~~~~~~~I~~l~~sp~~~~l~sgs~d-- 985 (1178)
+.... .-....+. ...|+. .+-++..+ ++.++|..+.+-. .++++. -...+..++++|+.+.++++..+
T Consensus 683 ~l~~s-~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~ 759 (1158)
T 3ei3_A 683 KLVFS-NVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIE 759 (1158)
T ss_dssp SEEEE-EBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEE
T ss_pred ceEEe-ccChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEecc
Confidence 33221 11222333 333442 23344333 4568887765422 233332 24567888888877765554311
Q ss_pred -----------------------------------------------CeEEEEECCCCceEEEEec-CCccEEEEEE---
Q 001042 986 -----------------------------------------------AVANIWDIRAGRQMHKFLG-HTKWIRSIRM--- 1014 (1178)
Q Consensus 986 -----------------------------------------------g~I~lwD~~~~~~~~~~~~-~~~~v~~l~~--- 1014 (1178)
+.|++.|..+.+.+..+.- ....+.+++.
T Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~ 839 (1158)
T 3ei3_A 760 VQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKL 839 (1158)
T ss_dssp EECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECC
T ss_pred ccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEE
Confidence 2367777777776655543 2334555543
Q ss_pred c---CCEEEEEe----------CCCcEEEEEcCCCeeeeEec-cCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCce
Q 001042 1015 D---RDTVITGS----------DDWTARMWSISRGTCDAVLA-CHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGI 1080 (1178)
Q Consensus 1015 ~---~~~l~sgs----------~dg~I~iwd~~~~~~~~~~~-~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~ 1080 (1178)
. ..++++|. ..|.|++|++..++.....+ ...+++++++-- +| +|++| ..++|++|++...+.
T Consensus 840 ~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g-~Lla~-ig~~l~vy~l~~~~~ 916 (1158)
T 3ei3_A 840 GKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NG-KLLAS-INSTVRLYEWTTEKE 916 (1158)
T ss_dssp TTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TT-EEEEE-ETTEEEEEEECTTSC
T ss_pred ccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CC-EEEEE-cCCEEEEEECCCCce
Confidence 2 24888876 35789999987554322211 246788888744 35 45554 357899999986532
Q ss_pred EEEEEecccC-CcEEEEecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCE
Q 001042 1081 KCVKNVTIHS-SAILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKR 1159 (1178)
Q Consensus 1081 ~~~~~~~~h~-~~i~~is~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~ 1159 (1178)
.. ....... ..+..+...++++++|..-..|.++..+.. .+ . ...+.. .-+..+++++.+-.++ .
T Consensus 917 L~-~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~-------~~-~---L~~~a~-D~~~~~vta~~~ld~~-t 982 (1158)
T 3ei3_A 917 LR-TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPM-------EG-N---FEEIAR-DFNPNWMSAVEILDDD-N 982 (1158)
T ss_dssp EE-EEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETT-------TT-E---EEEEEE-CCSCBCEEEEEEEETT-E
T ss_pred EE-EEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcC-------CC-e---EEEEEe-ecccccEEEEEEEccC-c
Confidence 11 1111111 123456567889999998888888765321 11 1 111111 2335578899887655 6
Q ss_pred EEEEeCCCcEEEEECCC
Q 001042 1160 ICSGGRNGLLRLWEATI 1176 (1178)
Q Consensus 1160 Las~s~Dg~V~IWdv~t 1176 (1178)
++.++.+|.+.+.....
T Consensus 983 ~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 983 FLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp EEEEETTSEEEEEEECT
T ss_pred EEEEcCCCcEEEEecCC
Confidence 77799999999887653
No 283
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.68 E-value=0.049 Score=63.75 Aligned_cols=247 Identities=7% Similarity=0.002 Sum_probs=135.0
Q ss_pred ceEEEEEeC---CCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCC-----eEEEEECCCC
Q 001042 925 QVSCVRMLS---GERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDA-----VANIWDIRAG 996 (1178)
Q Consensus 925 ~V~~l~~~~---~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg-----~I~lwD~~~~ 996 (1178)
....+++.+ +..|+.+...+.|+.+|..++...... ........++++++|+ |+++...+ .+...+...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC
Confidence 356788874 466776665589999999888765543 4456689999999999 55444321 2333333222
Q ss_pred ceE-EEEecCCccEEEEEEcC--CEEE-EEeCCCcEEEEEcCCCeeeeEe-c-cCCCcEEEEEEecCCCEEEE-EeCCCc
Q 001042 997 RQM-HKFLGHTKWIRSIRMDR--DTVI-TGSDDWTARMWSISRGTCDAVL-A-CHAGPVQCVEYSSSDRGIIT-GSSDGL 1069 (1178)
Q Consensus 997 ~~~-~~~~~~~~~v~~l~~~~--~~l~-sgs~dg~I~iwd~~~~~~~~~~-~-~h~~~I~~l~~spdg~~L~s-gs~Dg~ 1069 (1178)
... ..+ ........+++++ ..|. +-..++.|+.+|..++.....+ . +....-..++++|+|++|.. -...+.
T Consensus 218 ~~~~~~~-~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~ 296 (433)
T 4hw6_A 218 FTERLSL-CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC 296 (433)
T ss_dssp TCCEEEE-EECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred eeccccc-cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence 110 111 1223344566654 2444 4446778999998777652222 1 11223457999999995554 445678
Q ss_pred EEEEECC--CCceEEEEEeccc---C--------------CcEEEE---------ecCCCEEEEEeCCCcEEEEEcCCCc
Q 001042 1070 LRFWEND--DGGIKCVKNVTIH---S--------------SAILSI---------NAGDHWLGIGAADNSMSLFHRPQER 1121 (1178)
Q Consensus 1070 I~iwd~~--~~~~~~~~~~~~h---~--------------~~i~~i---------s~dg~~Lasgs~Dg~I~iwd~~~~~ 1121 (1178)
|+.++.+ ++.......+.+. . ..-.++ ..+|.+.++-...+.|+.++. .+.
T Consensus 297 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~ 375 (433)
T 4hw6_A 297 IYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGR 375 (433)
T ss_dssp EEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSE
T ss_pred EEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCC
Confidence 9998876 3322111111111 0 011344 445566666566677888774 333
Q ss_pred cccccCCCCC-ccceeEe-eccCCCcccEEEEEEc-CCCCEEEEEeCCCcEEEEECC
Q 001042 1122 LGGFSGTGSK-MSGWQLY-RTPQKTVAVVRCIASD-LERKRICSGGRNGLLRLWEAT 1175 (1178)
Q Consensus 1122 ~~~~~~~g~~-~~~~~~~-~~~~~h~~~V~~lafs-pdg~~Las~s~Dg~V~IWdv~ 1175 (1178)
+..+.+.+.. ...+.-- ......-..-..|+++ ++|.++++-..++.|+.++++
T Consensus 376 v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 376 VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 3322222210 0000000 0001112347889999 666666655667888888764
No 284
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.68 E-value=0.28 Score=61.89 Aligned_cols=354 Identities=9% Similarity=0.087 Sum_probs=191.5
Q ss_pred CcceEEEEecCCCCcccccccc-eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceecccc
Q 001042 768 GRSWVQSMFSREASSRSHSFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVG 846 (1178)
Q Consensus 768 ~~~i~~~aFSpdg~~las~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~ 846 (1178)
+..|.++.-..+|..-+ |..+ +..+|-..-.... .. -......|.++...
T Consensus 21 ~n~V~~I~qD~~G~lWi-gT~~GL~ryDG~~~~~~~---~~---------------~~~~~~~i~~i~~d---------- 71 (758)
T 3ott_A 21 ASVVSCFLQDSEGLIWI-GSNKGLFSYDGYSTQQHF---TY---------------GENNNTRIYCGVII---------- 71 (758)
T ss_dssp CCCEEEEEECTTSCEEE-EESSCEEEECSSCEEECS---CT---------------TSTTSSCEEEEEEE----------
T ss_pred cceEEEEEECCCCCEEE-EECCCccccCCCceEEEE---cc---------------CCCCCceEEEEEEc----------
Confidence 35677778888885433 2334 6667632211000 00 00123457777643
Q ss_pred ccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEec----CC
Q 001042 847 DREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELK----GH 922 (1178)
Q Consensus 847 ~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~----~h 922 (1178)
. ...|..|+.+| +..+|... .............|.++..++..+..++.+ -+..+|..+++...... ..
T Consensus 72 --~-~g~lWigT~~G-l~~yd~~~--~~f~~~~~~~~~~i~~i~~~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~ 144 (758)
T 3ott_A 72 --D-NTYLYMGTDNG-ILVYNYRA--DRYEQPETDFPTDVRTMALQGDTLWLGALN-GLYTYQLQSRKLTSFDTRRNGLP 144 (758)
T ss_dssp --T-TTEEEEEETTE-EEEEETTT--TEECCCSCCCCSCEEEEEEETTEEEEEETT-EEEEEETTTCCEEEECHHHHCCS
T ss_pred --C-CCcEEEEeCCC-eEEEeCCC--CEEECcccCCCceEEEEEecCCcEEEEcCC-cceeEeCCCCeEEEeccCCCCcC
Confidence 3 44677777766 78888652 222111111223455554344567777776 58889987766533211 12
Q ss_pred CCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecC-----CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Q 001042 923 DAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGR-----CSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGR 997 (1178)
Q Consensus 923 ~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~-----~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~ 997 (1178)
...|.++....++.+..|+.+ -+..+|..+++....... ....|.++..+.++..|..|+. +-+..+|..+++
T Consensus 145 ~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~ 222 (758)
T 3ott_A 145 NNTIYSIIRTKDNQIYVGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQ 222 (758)
T ss_dssp CSCEEEEEECTTCCEEEEETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTE
T ss_pred CCeEEEEEEcCCCCEEEEeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCe
Confidence 346777776655667777765 477888877764322111 1234888988888776666664 458889987765
Q ss_pred eEEEEecCCccEEEEEEcC-CEEEEEeCCCcEEEEEcCCCeeeeEec-------cCCCcEEEEEEecCCCEEEEEeCCCc
Q 001042 998 QMHKFLGHTKWIRSIRMDR-DTVITGSDDWTARMWSISRGTCDAVLA-------CHAGPVQCVEYSSSDRGIITGSSDGL 1069 (1178)
Q Consensus 998 ~~~~~~~~~~~v~~l~~~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~-------~h~~~I~~l~~spdg~~L~sgs~Dg~ 1069 (1178)
...........|.++..+. ..+..|+.+ -+.+++..+++...... -....|.++..+.+|. |..|+..|
T Consensus 223 ~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~G- 299 (758)
T 3ott_A 223 IKQTEAFHNNSIKSLALDGNGDLLAGTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHN-IWLGTDYG- 299 (758)
T ss_dssp EEEEEEEEEEEEEEEEECTTCCEEEEETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCC-EEEEESSS-
T ss_pred EEeccCCCCCeEEEEEEcCCCCEEEEeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCC-EEEEeCCc-
Confidence 4322112234578887754 466667754 58888876654322211 0234588998888776 55666666
Q ss_pred EEEEECCCCceEEEEEec----ccCCcEEEEe--cCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeec---
Q 001042 1070 LRFWENDDGGIKCVKNVT----IHSSAILSIN--AGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRT--- 1140 (1178)
Q Consensus 1070 I~iwd~~~~~~~~~~~~~----~h~~~i~~is--~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~--- 1140 (1178)
+.++.. +.......... .....|.++. .+|. |..|+.+| +..++..++.... +.....
T Consensus 300 l~~~~~-~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~-lWiGt~~G-l~~~~~~~~~~~~----------~~~~~~~~~ 366 (758)
T 3ott_A 300 ISLSRY-NSALQFIPISQITGTGDGNQFYSLFRDSKGF-YWFGGANG-LIRFTDPAGERHD----------AIWYRMGDK 366 (758)
T ss_dssp EEEECC-CC-CEEEEHHHHSCSCCCCBEEEEEECTTCC-EEEEETTE-EEEESCTTSSCCC----------CEEECTTCS
T ss_pred cccccc-CCceeEEecccCCCCCCCceEEEEEEcCCCC-EEEeeCCc-ceeecccccccce----------eEEeccCCc
Confidence 554433 22212111000 1234566763 3444 44555554 6666654321100 011100
Q ss_pred -cCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001042 1141 -PQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATIN 1177 (1178)
Q Consensus 1141 -~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~tg 1177 (1178)
..-....|.++.-..+|++-+ |+ ++-+..||..++
T Consensus 367 ~~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~ 402 (758)
T 3ott_A 367 TYPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDYATR 402 (758)
T ss_dssp SSCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEETTTT
T ss_pred CCCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCcCCC
Confidence 001234588888888887655 44 456778887654
No 285
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.67 E-value=0.14 Score=58.20 Aligned_cols=253 Identities=10% Similarity=0.149 Sum_probs=163.2
Q ss_pred CCcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEeCCCeEEE
Q 001042 860 DCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLT 939 (1178)
Q Consensus 860 Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~~~~~l~s 939 (1178)
+..|.|-|+........+... -...| ++|..+.+|.-. ..++.|+|+++.+.++...-. ..|.-=.|-+.+.++.
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~-AdsAI--MnP~~~iiALra-g~~lQiFnle~K~klks~~~~-e~VvfWkWis~~~l~l 121 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPIS-ADSAI--MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNTVAL 121 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECC-CSEEE--ECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEEEETTEEEE
T ss_pred CCeEEEEECCCCCcceecccc-cceee--eCCCCcEEEEec-CCeEEEEchHHhhhhcceecC-CCceEEEecCCCeEEE
Confidence 347888887743332222222 11122 578888777665 689999999999888887644 4565566667777766
Q ss_pred EeCCCeEEEEeCCCC-eEEEEecCC----CCCEEEEEEeCCCCEEEEEe-------CCCeEEEEECCCCceEEEEecCCc
Q 001042 940 ASHDGTVKMWDVRTD-TCVATVGRC----SSAVLCMEYDDSTGILAAGG-------RDAVANIWDIRAGRQMHKFLGHTK 1007 (1178)
Q Consensus 940 gs~dg~V~iwd~~~~-~~~~~~~~~----~~~I~~l~~sp~~~~l~sgs-------~dg~I~lwD~~~~~~~~~~~~~~~ 1007 (1178)
.+ +..|+-|++... .+++.+..| ...|..-..+++.++++..| -.|.+.+|..+.+ .-+.+.+|..
T Consensus 122 VT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa 199 (494)
T 1bpo_A 122 VT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAA 199 (494)
T ss_dssp EC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEE
T ss_pred Ec-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeee
Confidence 65 468999999743 455565544 45688888899999887654 2467889987644 4456778877
Q ss_pred cEEEEEEcCC-----EEEEEeC---CCcEEEEEcCCC---ee---eeEec------cCCCcEEEEEEecCCCEEEEEeCC
Q 001042 1008 WIRSIRMDRD-----TVITGSD---DWTARMWSISRG---TC---DAVLA------CHAGPVQCVEYSSSDRGIITGSSD 1067 (1178)
Q Consensus 1008 ~v~~l~~~~~-----~l~sgs~---dg~I~iwd~~~~---~~---~~~~~------~h~~~I~~l~~spdg~~L~sgs~D 1067 (1178)
.-..+..+++ .++.+.. .+.++|.++... .. .+... ...+-..++..++....+..-+.-
T Consensus 200 ~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~ 279 (494)
T 1bpo_A 200 SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKY 279 (494)
T ss_dssp EEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETT
T ss_pred eeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecC
Confidence 7777766554 3333433 278999998543 11 11111 123445688889888888889999
Q ss_pred CcEEEEECCCCceEEEEEecccCCcEEEE--ecCCCEEEEEeCCCcEEEEEcCCCc
Q 001042 1068 GLLRFWENDDGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQER 1121 (1178)
Q Consensus 1068 g~I~iwd~~~~~~~~~~~~~~h~~~i~~i--s~dg~~Lasgs~Dg~I~iwd~~~~~ 1121 (1178)
|.|.+||+.++ .++..-+-....|..- +....-++.....|.|.--.+....
T Consensus 280 G~i~lyDleTg--t~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 280 GYIHLYDLETG--TCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp SEEEEEETTTC--CEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred ceEEEEecccc--eeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence 99999999999 4444444444444333 3344445555577777766665443
No 286
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.66 E-value=0.061 Score=59.53 Aligned_cols=221 Identities=13% Similarity=0.073 Sum_probs=129.0
Q ss_pred cceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceE--EEecCCCEEEEEeCCC--
Q 001042 828 GAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKVVSGSDDQ-- 903 (1178)
Q Consensus 828 ~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~--~~s~d~~~l~sgs~dg-- 903 (1178)
.....++|. ++++++++-..++.|..||.+ +. ....... ..... ++.++|+.+++....+
T Consensus 32 ~~pegia~~------------~~g~lyv~d~~~~~I~~~d~~--g~-~~~~~~~-~~~p~gia~~~dG~l~vad~~~~~~ 95 (306)
T 2p4o_A 32 TFLENLASA------------PDGTIFVTNHEVGEIVSITPD--GN-QQIHATV-EGKVSGLAFTSNGDLVATGWNADSI 95 (306)
T ss_dssp CCEEEEEEC------------TTSCEEEEETTTTEEEEECTT--CC-EEEEEEC-SSEEEEEEECTTSCEEEEEECTTSC
T ss_pred CCcceEEEC------------CCCCEEEEeCCCCeEEEECCC--Cc-eEEEEeC-CCCceeEEEcCCCcEEEEeccCCcc
Confidence 345677776 788888887788999999965 22 2222211 12233 4678888666554332
Q ss_pred cEEEEECCCCcEEEEecC-CCCceEEEEEeCCCeEEEEe-CCCeEEEEeCCCCeE-EEEec---------CCCCCEEEEE
Q 001042 904 SVLVWDKQTSQLLEELKG-HDAQVSCVRMLSGERVLTAS-HDGTVKMWDVRTDTC-VATVG---------RCSSAVLCME 971 (1178)
Q Consensus 904 ~I~iwd~~t~~~~~~l~~-h~~~V~~l~~~~~~~l~sgs-~dg~V~iwd~~~~~~-~~~~~---------~~~~~I~~l~ 971 (1178)
.|..+|..+++....... .......++..++..++.+. .+|.|..+|..+++. +.... ..-.....+
T Consensus 96 ~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi- 174 (306)
T 2p4o_A 96 PVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL- 174 (306)
T ss_dssp EEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE-
T ss_pred eEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc-
Confidence 477778788876433221 22233445544455544444 589999999876532 21111 111234555
Q ss_pred EeCCCCEEEEEe-CCCeEEEEECCC-Cce--EEEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCeeee--Eec
Q 001042 972 YDDSTGILAAGG-RDAVANIWDIRA-GRQ--MHKFLGHTKWIRSIRMD--RDTVITGSDDWTARMWSISRGTCDA--VLA 1043 (1178)
Q Consensus 972 ~sp~~~~l~sgs-~dg~I~lwD~~~-~~~--~~~~~~~~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~--~~~ 1043 (1178)
+++++.++++. ..+.|..+|+.. ++. ...+.. ......++++ ++..++....+.|.++|.. ++... .+.
T Consensus 175 -s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~ 251 (306)
T 2p4o_A 175 -KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE 251 (306)
T ss_dssp -EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG
T ss_pred -CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecc
Confidence 78887665554 568999999874 321 111111 1234456664 4565555567889999965 55432 233
Q ss_pred cCCCcEEEEEEe---cCCCEEEEEeCCC
Q 001042 1044 CHAGPVQCVEYS---SSDRGIITGSSDG 1068 (1178)
Q Consensus 1044 ~h~~~I~~l~~s---pdg~~L~sgs~Dg 1068 (1178)
......++++|. ++++.|+.++..+
T Consensus 252 ~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 252 QGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp GTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred cccCCceEEEEecccCCCCEEEEECCCC
Confidence 333568999998 8888777666543
No 287
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.65 E-value=0.14 Score=67.19 Aligned_cols=302 Identities=12% Similarity=0.064 Sum_probs=157.2
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCceeeEeecccccceEEEe--c------CCCEEEEEeC-CCcEEEEECCCCcEEEEecC
Q 001042 851 AGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAIN--S------DRGKVVSGSD-DQSVLVWDKQTSQLLEELKG 921 (1178)
Q Consensus 851 ~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s--~------d~~~l~sgs~-dg~I~iwd~~t~~~~~~l~~ 921 (1178)
+..++.++ ++.+.+++++.......... .-...|.|++ + .++++++|.. |++++|+++.+.+.+....-
T Consensus 523 ~~~vvva~-g~~l~~fel~~~~L~~~~~~-~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L 600 (1158)
T 3ei3_A 523 SSQVVVAV-GRALYYLQIHPQELRQISHT-EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEML 600 (1158)
T ss_dssp SSEEEEEE-TTEEEEEEEETTEEEEEEEE-ECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEE-CCEEEEEEeeCCceeeeccc-CCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEEC
Confidence 34566655 57788877652211111111 1244677764 2 2478999997 99999999998776654322
Q ss_pred C-CCceEEEEEe---CCCeEEEEeCCCeEEEEeC--CCCeEEEE--ecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 001042 922 H-DAQVSCVRML---SGERVLTASHDGTVKMWDV--RTDTCVAT--VGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDI 993 (1178)
Q Consensus 922 h-~~~V~~l~~~---~~~~l~sgs~dg~V~iwd~--~~~~~~~~--~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~ 993 (1178)
. .....++... ...++..|-.||.+.-+.+ .+|..... ..-...++.-..+...|..-+.+..+....++.-
T Consensus 601 ~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~ 680 (1158)
T 3ei3_A 601 GGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSS 680 (1158)
T ss_dssp CSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEES
T ss_pred CCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEc
Confidence 1 2234444443 3456888999998765544 45544322 1122344544444444443333333444445543
Q ss_pred CCCceEEEEecCCccEEEEE-Ec----CCEEEEEeCCCcEEEEEcCCCee--eeEeccCCCcEEEEEEecCCCEEEEEeC
Q 001042 994 RAGRQMHKFLGHTKWIRSIR-MD----RDTVITGSDDWTARMWSISRGTC--DAVLACHAGPVQCVEYSSSDRGIITGSS 1066 (1178)
Q Consensus 994 ~~~~~~~~~~~~~~~v~~l~-~~----~~~l~sgs~dg~I~iwd~~~~~~--~~~~~~h~~~I~~l~~spdg~~L~sgs~ 1066 (1178)
+ ++.... .-....+..++ |+ ++-++..+ ++.++|..+.+-.. ++++. -...+..++++|+.+.++.+..
T Consensus 681 ~-~~l~~s-~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~ 756 (1158)
T 3ei3_A 681 N-HKLVFS-NVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSS 756 (1158)
T ss_dssp S-SSEEEE-EBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEE
T ss_pred C-CceEEe-ccChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEE
Confidence 3 332211 11222333333 32 44565444 45688888754322 22222 2356778888887776544331
Q ss_pred C-------------------------------------------------CcEEEEECCCCceEEEEEecccCCcEEEE-
Q 001042 1067 D-------------------------------------------------GLLRFWENDDGGIKCVKNVTIHSSAILSI- 1096 (1178)
Q Consensus 1067 D-------------------------------------------------g~I~iwd~~~~~~~~~~~~~~h~~~i~~i- 1096 (1178)
+ +.|++.|-.+.+......+.. ...+.++
T Consensus 757 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~-nE~~~sv~ 835 (1158)
T 3ei3_A 757 RIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQ-NEYALSLV 835 (1158)
T ss_dssp EEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCT-TEEEEEEE
T ss_pred eccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCC-CcceEEEE
Confidence 1 235555555543222222221 1223333
Q ss_pred --e---cCCCEEEEEe----------CCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEE
Q 001042 1097 --N---AGDHWLGIGA----------ADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRIC 1161 (1178)
Q Consensus 1097 --s---~dg~~Lasgs----------~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~La 1161 (1178)
. ....++++|+ ..|.|.+|++.+++ .+.+... ...++|++++-- +|++||
T Consensus 836 ~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~k-------------L~lv~~~-~v~g~v~al~~~-~g~Lla 900 (1158)
T 3ei3_A 836 SCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGK-------------LQTVAEK-EVKGAVYSMVEF-NGKLLA 900 (1158)
T ss_dssp EECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTE-------------EEEEEEE-EESSCEEEEEEE-TTEEEE
T ss_pred EEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCE-------------EEEEEEE-EcCCcCEEEeee-CCEEEE
Confidence 1 2247888887 34789999885221 1333322 235678888733 454444
Q ss_pred EEeCCCcEEEEECCC
Q 001042 1162 SGGRNGLLRLWEATI 1176 (1178)
Q Consensus 1162 s~s~Dg~V~IWdv~t 1176 (1178)
+ ...+|++|++..
T Consensus 901 ~--ig~~l~vy~l~~ 913 (1158)
T 3ei3_A 901 S--INSTVRLYEWTT 913 (1158)
T ss_dssp E--ETTEEEEEEECT
T ss_pred E--cCCEEEEEECCC
Confidence 3 357899999864
No 288
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.65 E-value=0.0021 Score=71.30 Aligned_cols=217 Identities=12% Similarity=0.117 Sum_probs=119.2
Q ss_pred CeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCc---eEEE--EecCCccEEEEE
Q 001042 944 GTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRD-----AVANIWDIRAGR---QMHK--FLGHTKWIRSIR 1013 (1178)
Q Consensus 944 g~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~d-----g~I~lwD~~~~~---~~~~--~~~~~~~v~~l~ 1013 (1178)
..+.+||..+++-...-..........+..-++..++.|+.+ ..+.+||..+++ -... +........++.
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~ 110 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT 110 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE
Confidence 368889988876433211111111111122356677777754 468999998766 3222 222222333444
Q ss_pred EcCCEEEEEeCC-----CcEEEEEcCCCeeeeE--eccCCCcEEEEEEecCCCEEEEEeCC-----CcEEEEECCCCceE
Q 001042 1014 MDRDTVITGSDD-----WTARMWSISRGTCDAV--LACHAGPVQCVEYSSSDRGIITGSSD-----GLLRFWENDDGGIK 1081 (1178)
Q Consensus 1014 ~~~~~l~sgs~d-----g~I~iwd~~~~~~~~~--~~~h~~~I~~l~~spdg~~L~sgs~D-----g~I~iwd~~~~~~~ 1081 (1178)
.++..++.|+.+ ..+.+||..+++.... +......-.++. -+++.++.|+.+ ..+.+||..+.++.
T Consensus 111 ~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~ 188 (301)
T 2vpj_A 111 LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHWT 188 (301)
T ss_dssp ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEE
T ss_pred ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcEE
Confidence 566666666643 3588999887654332 211111112222 267777777754 45889999988666
Q ss_pred EEEEecccCCcEEEEecCCCEEEEEeCC-----CcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCC
Q 001042 1082 CVKNVTIHSSAILSINAGDHWLGIGAAD-----NSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLE 1156 (1178)
Q Consensus 1082 ~~~~~~~h~~~i~~is~dg~~Lasgs~D-----g~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspd 1156 (1178)
.+...........++..++.+++.|+.+ ..+.+||..+. .|..+...........++.+ +
T Consensus 189 ~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~-------------~W~~~~~~p~~r~~~~~~~~--~ 253 (301)
T 2vpj_A 189 NVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTD-------------SWTTVTSMTTPRCYVGATVL--R 253 (301)
T ss_dssp EECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT-------------EEEEECCCSSCCBSCEEEEE--T
T ss_pred eCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCC-------------cEEECCCCCCcccceeEEEE--C
Confidence 5544333222223344577888888764 46888998743 34444332211111222222 6
Q ss_pred CCEEEEEeCC-----CcEEEEECCCC
Q 001042 1157 RKRICSGGRN-----GLLRLWEATIN 1177 (1178)
Q Consensus 1157 g~~Las~s~D-----g~V~IWdv~tg 1177 (1178)
+++++.||.+ ..|.+||.+++
T Consensus 254 ~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 254 GRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp TEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred CEEEEEcCcCCCcccccEEEEcCCCC
Confidence 7788888766 35788888765
No 289
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.64 E-value=0.059 Score=62.35 Aligned_cols=218 Identities=10% Similarity=-0.046 Sum_probs=131.9
Q ss_pred cccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCC--ceeeEeecccccce--EEEecC-CCEEEEEe
Q 001042 826 HAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRG--SELRATLKGHTRTV--RAINSD-RGKVVSGS 900 (1178)
Q Consensus 826 H~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~--~~~~~~l~~h~~~V--~~~s~d-~~~l~sgs 900 (1178)
....+.+|+|.+ .++.+.++-...+.|+.++++... .............. .++.+. ++..++-.
T Consensus 110 ~~~~~~~l~~d~-----------~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~ 178 (400)
T 3p5b_L 110 NLRNVVALDTEV-----------ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS 178 (400)
T ss_dssp SCSCEEEEEEET-----------TTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEET
T ss_pred ccCcceEEeeee-----------ccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEEC
Confidence 345678899872 345555565667889999876211 11222222122222 256664 44455556
Q ss_pred CCCcEEEEECCCCcEEEEecCCCCceEEEEEeC-CCeEEEEeC--CCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCC
Q 001042 901 DDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLS-GERVLTASH--DGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTG 977 (1178)
Q Consensus 901 ~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~~-~~~l~sgs~--dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~ 977 (1178)
..+.|.+.+++.......+.........+++.+ +..++.... .+.|...++............-.....+++++++.
T Consensus 179 ~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~ 258 (400)
T 3p5b_L 179 VLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSG 258 (400)
T ss_dssp TTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTT
T ss_pred CCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCC
Confidence 678899999886655444444445678888873 555555442 47888888865444333434446789999998777
Q ss_pred EEEEEe-CCCeEEEEECCCCceEEEEec--CCccEEEEEEcCCE-EEEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEE
Q 001042 978 ILAAGG-RDAVANIWDIRAGRQMHKFLG--HTKWIRSIRMDRDT-VITGSDDWTARMWSISRGTCDAVLACHAGPVQCVE 1053 (1178)
Q Consensus 978 ~l~sgs-~dg~I~lwD~~~~~~~~~~~~--~~~~v~~l~~~~~~-l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~ 1053 (1178)
.|+.+. ..+.|..+|+........... .......+++.++. +++-...+.|..+|..+|+.+..+........++.
T Consensus 259 ~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~ 338 (400)
T 3p5b_L 259 RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMV 338 (400)
T ss_dssp EEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEE
T ss_pred EEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEE
Confidence 776664 567899999865443322222 23456677776664 44555667898899778877766654444455554
Q ss_pred E
Q 001042 1054 Y 1054 (1178)
Q Consensus 1054 ~ 1054 (1178)
.
T Consensus 339 v 339 (400)
T 3p5b_L 339 L 339 (400)
T ss_dssp E
T ss_pred E
Confidence 4
No 290
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.57 E-value=0.0051 Score=68.13 Aligned_cols=232 Identities=13% Similarity=0.141 Sum_probs=126.3
Q ss_pred CCCEEEEEe-CC-----CcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEEeCC-----CcEEEEECCCCc---E
Q 001042 850 DAGFFISGS-TD-----CLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDD-----QSVLVWDKQTSQ---L 915 (1178)
Q Consensus 850 d~~~Lasgs-~D-----g~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sgs~d-----g~I~iwd~~t~~---~ 915 (1178)
++.+++.|+ .+ ..+.++|+..........+........+...++..++.|+.+ ..+.+||..+++ -
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W 93 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVW 93 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCee
Confidence 345666666 32 368888876433322222222222222344567777777754 468999988776 3
Q ss_pred EEE--ecCCCCceEEEEEeCCCeEEEEeCC-----CeEEEEeCCCCeEEEE--ecCCCCCEEEEEEeCCCCEEEEEeCC-
Q 001042 916 LEE--LKGHDAQVSCVRMLSGERVLTASHD-----GTVKMWDVRTDTCVAT--VGRCSSAVLCMEYDDSTGILAAGGRD- 985 (1178)
Q Consensus 916 ~~~--l~~h~~~V~~l~~~~~~~l~sgs~d-----g~V~iwd~~~~~~~~~--~~~~~~~I~~l~~sp~~~~l~sgs~d- 985 (1178)
... +... ..-.+++..++..++.|+.+ ..+.+||..+++-... .........++.+ +++.++.|+.+
T Consensus 94 ~~~~~~p~~-r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~ 170 (301)
T 2vpj_A 94 YSVAPMNVR-RGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDG 170 (301)
T ss_dssp EEECCCSSC-CBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCS
T ss_pred EECCCCCCC-ccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCC
Confidence 222 2111 11123333366677777654 3688999988764332 2211222222222 66777777654
Q ss_pred ----CeEEEEECCCCceEEE--EecCCccEEEEEEcCCEEEEEeCC-----CcEEEEEcCCCeeeeEecc--CCCcEEEE
Q 001042 986 ----AVANIWDIRAGRQMHK--FLGHTKWIRSIRMDRDTVITGSDD-----WTARMWSISRGTCDAVLAC--HAGPVQCV 1052 (1178)
Q Consensus 986 ----g~I~lwD~~~~~~~~~--~~~~~~~v~~l~~~~~~l~sgs~d-----g~I~iwd~~~~~~~~~~~~--h~~~I~~l 1052 (1178)
..+.+||..+.+-... +........++..++..++.|+.+ ..+.+||..+++....-.. .......+
T Consensus 171 ~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~ 250 (301)
T 2vpj_A 171 LNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGAT 250 (301)
T ss_dssp SCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred CcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEE
Confidence 4588999887754332 111222233445566667777654 4689999988765433211 11111222
Q ss_pred EEecCCCEEEEEeCC-----CcEEEEECCCCceEEEEEe
Q 001042 1053 EYSSSDRGIITGSSD-----GLLRFWENDDGGIKCVKNV 1086 (1178)
Q Consensus 1053 ~~spdg~~L~sgs~D-----g~I~iwd~~~~~~~~~~~~ 1086 (1178)
. -+++.++.|+.+ ..+.+||..+.++..+..+
T Consensus 251 ~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 287 (301)
T 2vpj_A 251 V--LRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSM 287 (301)
T ss_dssp E--ETTEEEEECCBCSSSBEEEEEEEETTTTEEEEEEEE
T ss_pred E--ECCEEEEEcCcCCCcccccEEEEcCCCCeEEEcCCC
Confidence 2 267777777755 3578899888766555433
No 291
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.57 E-value=0.1 Score=58.47 Aligned_cols=279 Identities=8% Similarity=-0.009 Sum_probs=145.0
Q ss_pred CCCCCcccccCCcceEEEEecCCCCcccccccceeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEee
Q 001042 757 DDQQPAEASGIGRSWVQSMFSREASSRSHSFSRVRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCV 836 (1178)
Q Consensus 757 ~~~~~~~~~gh~~~i~~~aFSpdg~~las~~~dI~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs 836 (1178)
.+++.... .....+.+++|.+++..++++.....++..+.++. +.............+.+|.+.
T Consensus 25 ~~W~~~~~-~~~~~~~~v~~~~~~~~~~~G~~g~i~~s~DgG~t---------------W~~~~~~~~~~~~~~~~i~~~ 88 (327)
T 2xbg_A 25 NPWEAIQL-PTTATILDMSFIDRHHGWLVGVNATLMETRDGGQT---------------WEPRTLVLDHSDYRFNSVSFQ 88 (327)
T ss_dssp CCEEEEEC-SCSSCEEEEEESSSSCEEEEETTTEEEEESSTTSS---------------CEECCCCCSCCCCEEEEEEEE
T ss_pred CCceEeec-CCCCcEEEEEECCCCcEEEEcCCCeEEEeCCCCCC---------------CeECCCCCCCCCccEEEEEec
Confidence 34444433 33457888999988888876554443444554431 000000011124467888775
Q ss_pred eccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeec--ccccceEEE--ecCCCEEEEEeCCCcEEEEECCC
Q 001042 837 TKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLK--GHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQT 912 (1178)
Q Consensus 837 ~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~--~h~~~V~~~--s~d~~~l~sgs~dg~I~iwd~~t 912 (1178)
+ +..++ ++.+|.|..-+ ..+........ .+...+..+ ..++..++ ++.+|.|.. ..+.
T Consensus 89 ------------~-~~~~~-~g~~g~i~~S~--DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~g~v~~-S~Dg 150 (327)
T 2xbg_A 89 ------------G-NEGWI-VGEPPIMLHTT--DGGQSWSQIPLDPKLPGSPRLIKALGNGSAEM-ITNVGAIYR-TKDS 150 (327)
T ss_dssp ------------T-TEEEE-EEETTEEEEES--STTSSCEECCCCTTCSSCEEEEEEEETTEEEE-EETTCCEEE-ESST
T ss_pred ------------C-CeEEE-EECCCeEEEEC--CCCCCceECccccCCCCCeEEEEEECCCCEEE-EeCCccEEE-EcCC
Confidence 4 33444 45566555432 12222222111 122334443 34454444 445565432 2223
Q ss_pred CcEEE-EecCCCCceEEEEEeCCCeEEEEeCCCeEEE-EeC--CCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeE
Q 001042 913 SQLLE-ELKGHDAQVSCVRMLSGERVLTASHDGTVKM-WDV--RTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVA 988 (1178)
Q Consensus 913 ~~~~~-~l~~h~~~V~~l~~~~~~~l~sgs~dg~V~i-wd~--~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I 988 (1178)
|+.-. ....+...+..+.+.++..++.++.+|.+.. +|- .+-+.+. ......+..++++++++.+ .++.+|.+
T Consensus 151 G~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~G~~ 227 (327)
T 2xbg_A 151 GKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLW-MIVNGGKI 227 (327)
T ss_dssp TSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEE-EEETTTEE
T ss_pred CCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEE-EEeCCceE
Confidence 33222 2234556788888885445555555555444 442 2223332 2345678899999988765 45567888
Q ss_pred EEEECCCCceEEEEec----CCccEEEEEEc-CCEEEEEeCCCcEEEEEcCCCeeeeEecc---CCCcEEEEEEecCCCE
Q 001042 989 NIWDIRAGRQMHKFLG----HTKWIRSIRMD-RDTVITGSDDWTARMWSISRGTCDAVLAC---HAGPVQCVEYSSSDRG 1060 (1178)
Q Consensus 989 ~lwD~~~~~~~~~~~~----~~~~v~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---h~~~I~~l~~spdg~~ 1060 (1178)
++.+...++.-..... ....+.++++. +..++.++.+|.+ .+....|+.-..+.. ....+.++.|.+++.
T Consensus 228 ~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~- 305 (327)
T 2xbg_A 228 AFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ- 305 (327)
T ss_dssp EEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-
T ss_pred EEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-
Confidence 7764332332222221 22357888884 3345555567777 445555554444432 245678898876554
Q ss_pred EEEEeCCCcEEEEE
Q 001042 1061 IITGSSDGLLRFWE 1074 (1178)
Q Consensus 1061 L~sgs~Dg~I~iwd 1074 (1178)
+++++.+|.|.-++
T Consensus 306 ~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 306 GFILGQKGILLRYV 319 (327)
T ss_dssp EEEECSTTEEEEEC
T ss_pred eEEEcCCceEEEEc
Confidence 66667889776654
No 292
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.56 E-value=0.084 Score=59.97 Aligned_cols=224 Identities=8% Similarity=0.111 Sum_probs=148.9
Q ss_pred CCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEE-cCCEEEE
Q 001042 943 DGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM-DRDTVIT 1021 (1178)
Q Consensus 943 dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~-~~~~l~s 1021 (1178)
+..|.+.|+.++..+....- ...+...+|..+.+|.-. ...+.++|+.+...++.+.-.. .|.--.| +++.|+.
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi---~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~~~l~l 121 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVAL 121 (494)
T ss_dssp CCEEEEEETTSTTSCEEEEC---CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEETTEEEE
T ss_pred CCeEEEEECCCCCcceeccc---ccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCCCeEEE
Confidence 34788889887654322111 112456788888777765 7899999999999998886555 4555666 7777776
Q ss_pred EeCCCcEEEEEcCC-CeeeeEeccC----CCcEEEEEEecCCCEEEEEe-------CCCcEEEEECCCCceEEEEEeccc
Q 001042 1022 GSDDWTARMWSISR-GTCDAVLACH----AGPVQCVEYSSSDRGIITGS-------SDGLLRFWENDDGGIKCVKNVTIH 1089 (1178)
Q Consensus 1022 gs~dg~I~iwd~~~-~~~~~~~~~h----~~~I~~l~~spdg~~L~sgs-------~Dg~I~iwd~~~~~~~~~~~~~~h 1089 (1178)
.+ +..|+-|++.. ..+.+.+..| ...|..-..+++.++++..| -.|.+.+|..+.+ ..+.++||
T Consensus 122 VT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~---~sQ~ieGh 197 (494)
T 1bpo_A 122 VT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK---VSQPIEGH 197 (494)
T ss_dssp EC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC---CEEEECCS
T ss_pred Ec-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc---ccchheee
Confidence 65 45899999974 3556666654 34677888899999976544 2467889998875 45667888
Q ss_pred CCcEEEEecCC-----CEEEEEeCC---CcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEE
Q 001042 1090 SSAILSINAGD-----HWLGIGAAD---NSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRIC 1161 (1178)
Q Consensus 1090 ~~~i~~is~dg-----~~Lasgs~D---g~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~La 1161 (1178)
...-..+..+| ..++.+... +.++|-++....... ..-.....++...+....+--.++..|+.-..+.
T Consensus 198 aa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~---~~f~kk~vdv~fppe~~~DFPvamqvs~kygviy 274 (494)
T 1bpo_A 198 AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN---QPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVF 274 (494)
T ss_dssp EEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTC---CCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEE
T ss_pred eeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCC---CCccceeeeeeCCcccccCceeEEEecccCCEEE
Confidence 87776664333 244444443 789999985321000 0000001122223334455566889999999999
Q ss_pred EEeCCCcEEEEECCCCC
Q 001042 1162 SGGRNGLLRLWEATINI 1178 (1178)
Q Consensus 1162 s~s~Dg~V~IWdv~tg~ 1178 (1178)
..+.-|.|.++|++||.
T Consensus 275 viTK~G~i~lyDleTgt 291 (494)
T 1bpo_A 275 LITKYGYIHLYDLETGT 291 (494)
T ss_dssp EEETTSEEEEEETTTCC
T ss_pred EEecCceEEEEecccce
Confidence 99999999999999984
No 293
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.55 E-value=0.4 Score=60.37 Aligned_cols=350 Identities=11% Similarity=0.049 Sum_probs=185.1
Q ss_pred cceEEEEecCCCCcccccccceeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceecccccc
Q 001042 769 RSWVQSMFSREASSRSHSFSRVRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDR 848 (1178)
Q Consensus 769 ~~i~~~aFSpdg~~las~~~dI~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~~~~s 848 (1178)
..|.++.-..+|.+.+.....+..+|..+..... ........|.++..
T Consensus 63 ~~i~~i~~d~~g~lWigT~~Gl~~yd~~~~~f~~-------------------~~~~~~~~i~~i~~------------- 110 (758)
T 3ott_A 63 TRIYCGVIIDNTYLYMGTDNGILVYNYRADRYEQ-------------------PETDFPTDVRTMAL------------- 110 (758)
T ss_dssp SCEEEEEEETTTEEEEEETTEEEEEETTTTEECC-------------------CSCCCCSCEEEEEE-------------
T ss_pred ceEEEEEEcCCCcEEEEeCCCeEEEeCCCCEEEC-------------------cccCCCceEEEEEe-------------
Confidence 4577777777775444333238888877543100 00001224665543
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCCceeeEeec-----ccccceEEEecC-CCEEEEEeCCCcEEEEECCCCcEEEEe-cC
Q 001042 849 EDAGFFISGSTDCLVKIWDPSLRGSELRATLK-----GHTRTVRAINSD-RGKVVSGSDDQSVLVWDKQTSQLLEEL-KG 921 (1178)
Q Consensus 849 ~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~-----~h~~~V~~~s~d-~~~l~sgs~dg~I~iwd~~t~~~~~~l-~~ 921 (1178)
.+| .|..|+.+ -+..+|... ... ..+. -....|.++..| ...+..|+.+ -+..++..+++..... ..
T Consensus 111 ~~g-~lWigt~~-Gl~~~~~~~--~~~-~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~ 184 (758)
T 3ott_A 111 QGD-TLWLGALN-GLYTYQLQS--RKL-TSFDTRRNGLPNNTIYSIIRTKDNQIYVGTYN-GLCRYIPSNGKFEGIPLPV 184 (758)
T ss_dssp ETT-EEEEEETT-EEEEEETTT--CCE-EEECHHHHCCSCSCEEEEEECTTCCEEEEETT-EEEEEETTTTEEEEECCCC
T ss_pred cCC-cEEEEcCC-cceeEeCCC--CeE-EEeccCCCCcCCCeEEEEEEcCCCCEEEEeCC-CHhhCccCCCceEEecCCC
Confidence 234 56666666 477888652 222 2221 112456666443 3445556655 4778888776543221 11
Q ss_pred C----CCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Q 001042 922 H----DAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAG 996 (1178)
Q Consensus 922 h----~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~ 996 (1178)
. ...|.++... +++.+..|+. +-+..+|..+++...........|.++..+.+|.+. .|+. +-+.++|..++
T Consensus 185 ~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igT~-~Gl~~~~~~~~ 261 (758)
T 3ott_A 185 HSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLL-AGTD-NGLYVYHNDTT 261 (758)
T ss_dssp CTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEE-EEET-TEEEEECCTTS
T ss_pred ccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEE-EEeC-CceeEEecCCC
Confidence 1 2247777766 4566677764 568889988776433221223458888888877755 4554 45888888765
Q ss_pred ceEEEEe-------cCCccEEEEEEcCC-EEEEEeCCCcEEEEEcCCCeeeeEec-----cCCCcEEEEEEecCCCEEEE
Q 001042 997 RQMHKFL-------GHTKWIRSIRMDRD-TVITGSDDWTARMWSISRGTCDAVLA-----CHAGPVQCVEYSSSDRGIIT 1063 (1178)
Q Consensus 997 ~~~~~~~-------~~~~~v~~l~~~~~-~l~sgs~dg~I~iwd~~~~~~~~~~~-----~h~~~I~~l~~spdg~~L~s 1063 (1178)
+...-.. -....|.++..+.+ .|..|+..| +.++.....-...... .....|.++.-+.+|. |..
T Consensus 262 ~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~-lWi 339 (758)
T 3ott_A 262 PLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGF-YWF 339 (758)
T ss_dssp CCEEECCCTTCTTSCSCSCEEEEEECTTCCEEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCC-EEE
T ss_pred cEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCC-EEE
Confidence 4332211 12245888888644 677777766 5544322111111111 1234688888888776 445
Q ss_pred EeCCCcEEEEECCCCceEEEEEec-------ccCCcEEEEec--CCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccc
Q 001042 1064 GSSDGLLRFWENDDGGIKCVKNVT-------IHSSAILSINA--GDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSG 1134 (1178)
Q Consensus 1064 gs~Dg~I~iwd~~~~~~~~~~~~~-------~h~~~i~~is~--dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~ 1134 (1178)
|+.+| +..++..++.......+. .....|.++.. +|+ |..|+ ++-+..||..+++...+....
T Consensus 340 Gt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt-~~GL~~~~~~~~~~~~~~~~~----- 411 (758)
T 3ott_A 340 GGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQ-LWIAT-DGSINRYDYATRQFIHYNIVD----- 411 (758)
T ss_dssp EETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSC-EEEEE-TTEEEEEETTTTEEEEEEEEC-----
T ss_pred eeCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCC-EEEEe-CCcHhhcCcCCCcEEEeecCC-----
Confidence 55555 656665543211111111 11235777743 444 45566 457889998754322111000
Q ss_pred eeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001042 1135 WQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEA 1174 (1178)
Q Consensus 1135 ~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv 1174 (1178)
.........|.++.-..+|.+.+ |+..+-+.++|.
T Consensus 412 ----~~~~~~~~~v~~i~~d~~g~lWi-gT~~~Gl~~~~~ 446 (758)
T 3ott_A 412 ----NTGTYNTNWTYYIFEDTAGQLWI-STCLGGIFVVDK 446 (758)
T ss_dssp ----CC--CBSSSEEEEEECTTSEEEE-EESSSCEEEEEH
T ss_pred ----CcCCCCCceEEEEEEcCCCCEEE-EECCCceEEEcc
Confidence 00001234688888888887554 555555666653
No 294
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.51 E-value=0.0053 Score=77.60 Aligned_cols=236 Identities=11% Similarity=0.013 Sum_probs=126.8
Q ss_pred c-CCCCEEEEEeC-CC----cEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEEeCC-----CcEEEEECCCCcE-
Q 001042 848 R-EDAGFFISGST-DC----LVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDD-----QSVLVWDKQTSQL- 915 (1178)
Q Consensus 848 s-~d~~~Lasgs~-Dg----~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sgs~d-----g~I~iwd~~t~~~- 915 (1178)
| |||++||.+.. +| +|+++|+......+...+... ..-.+|++||+.|+....| ..|.++++.+++.
T Consensus 182 S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~-~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~ 260 (751)
T 2xe4_A 182 APPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGT-NGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSE 260 (751)
T ss_dssp CTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEE-CSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGG
T ss_pred cCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCc-eeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchh
Confidence 5 79998886543 33 499999873302111112211 1123589999988877765 3688889887642
Q ss_pred -EEEec-CCCCceEEEEEe-CCCeEEEEeC---CCeEEEEeCCCC--eE-EEEe-cCCCCCEEEEEEeCCCCEEEEEeCC
Q 001042 916 -LEELK-GHDAQVSCVRML-SGERVLTASH---DGTVKMWDVRTD--TC-VATV-GRCSSAVLCMEYDDSTGILAAGGRD 985 (1178)
Q Consensus 916 -~~~l~-~h~~~V~~l~~~-~~~~l~sgs~---dg~V~iwd~~~~--~~-~~~~-~~~~~~I~~l~~sp~~~~l~sgs~d 985 (1178)
...+. .+......+.|+ ++..|+..+. ...|.++|+.++ +. +..+ ........++.|+.++.+++....+
T Consensus 261 ~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~ 340 (751)
T 2xe4_A 261 DVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEG 340 (751)
T ss_dssp CEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTT
T ss_pred cEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCC
Confidence 22332 233456678888 6777765542 446888998875 23 1333 2334455566655444444444433
Q ss_pred ----CeEEEEECCCCceEEE-EecCC--ccEEEEEEcCCE-EEEEeCCCc--EEEEEc-------CCCeeeeEeccC-CC
Q 001042 986 ----AVANIWDIRAGRQMHK-FLGHT--KWIRSIRMDRDT-VITGSDDWT--ARMWSI-------SRGTCDAVLACH-AG 1047 (1178)
Q Consensus 986 ----g~I~lwD~~~~~~~~~-~~~~~--~~v~~l~~~~~~-l~sgs~dg~--I~iwd~-------~~~~~~~~~~~h-~~ 1047 (1178)
..|..+|+.++..... +..+. ..+..+.+.++. +++...+|. +.++|+ .+++....+... ..
T Consensus 341 ~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~ 420 (751)
T 2xe4_A 341 GAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPI 420 (751)
T ss_dssp TCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEEECCTTTSCCCTTTCCEECCCCCSS
T ss_pred CCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEEecccccccccCCccceEECCCCce
Confidence 3677788765322222 22232 255677776664 555666775 455564 333313333211 12
Q ss_pred cEEEEEE----ecCCCE-EEEEeCC---CcEEEEECCCCceEEEE
Q 001042 1048 PVQCVEY----SSSDRG-IITGSSD---GLLRFWENDDGGIKCVK 1084 (1178)
Q Consensus 1048 ~I~~l~~----spdg~~-L~sgs~D---g~I~iwd~~~~~~~~~~ 1084 (1178)
.+..+.+ ++++.. +++.++. +.+..+|+.+++...+.
T Consensus 421 ~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~~l~ 465 (751)
T 2xe4_A 421 FTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSRTAVK 465 (751)
T ss_dssp CEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCEEEEE
T ss_pred eEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcEEEEe
Confidence 2333332 345544 4444332 45777788777544444
No 295
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.51 E-value=0.0067 Score=67.18 Aligned_cols=225 Identities=12% Similarity=0.136 Sum_probs=121.7
Q ss_pred CeEEEEeCC----CeEEEEeCCCCeEEEEecCCCCCE-EEEEEeCCCCEEEEEeCC-----CeEEEEECCCCceEEE--E
Q 001042 935 ERVLTASHD----GTVKMWDVRTDTCVATVGRCSSAV-LCMEYDDSTGILAAGGRD-----AVANIWDIRAGRQMHK--F 1002 (1178)
Q Consensus 935 ~~l~sgs~d----g~V~iwd~~~~~~~~~~~~~~~~I-~~l~~sp~~~~l~sgs~d-----g~I~lwD~~~~~~~~~--~ 1002 (1178)
..++.|+.+ ..+..||..+++-...-....... .+++. -++..++.|+.+ ..+.+||..+.+-... +
T Consensus 17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~ 95 (302)
T 2xn4_A 17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVY-MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANM 95 (302)
T ss_dssp EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCC
T ss_pred EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEE-ECCEEEEEeCcCCCccccceEEECCCCCceeeCCCC
Confidence 344455433 357889988776433211111111 12222 266677777754 3588999887654322 1
Q ss_pred ecCCccEEEEEEcCCEEEEEeCCC-----cEEEEEcCCCeeeeEe--ccCCCcEEEEEEecCCCEEEEEeCC-------C
Q 001042 1003 LGHTKWIRSIRMDRDTVITGSDDW-----TARMWSISRGTCDAVL--ACHAGPVQCVEYSSSDRGIITGSSD-------G 1068 (1178)
Q Consensus 1003 ~~~~~~v~~l~~~~~~l~sgs~dg-----~I~iwd~~~~~~~~~~--~~h~~~I~~l~~spdg~~L~sgs~D-------g 1068 (1178)
........++..++..++.|+.++ .+.+||..+.+....- .........+. -+++.++.|+.+ .
T Consensus 96 p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~ 173 (302)
T 2xn4_A 96 RDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV--VGGLLYAVGGYDVASRQCLS 173 (302)
T ss_dssp SSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEETTTTEECC
T ss_pred CccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE--ECCEEEEEeCCCCCCCcccc
Confidence 112222334445666777776553 4778898876543321 11111112222 256677776642 3
Q ss_pred cEEEEECCCCceEEEEEecccCCcEEEEecCCCEEEEEeCC-----CcEEEEEcCCCccccccCCCCCccceeEeeccCC
Q 001042 1069 LLRFWENDDGGIKCVKNVTIHSSAILSINAGDHWLGIGAAD-----NSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQK 1143 (1178)
Q Consensus 1069 ~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~Lasgs~D-----g~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~ 1143 (1178)
.+.+||..+..+..+............+..++.+++.|+.+ ..+.+||..+. .|..+.....
T Consensus 174 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~-------------~W~~~~~~~~ 240 (302)
T 2xn4_A 174 TVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTN-------------AWRQVADMNM 240 (302)
T ss_dssp CEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTT-------------EEEEECCCSS
T ss_pred EEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCC-------------CEeeCCCCCC
Confidence 58899999886665544433222223344577888888764 36888888643 3444332221
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCC
Q 001042 1144 TVAVVRCIASDLERKRICSGGRNG-----LLRLWEATIN 1177 (1178)
Q Consensus 1144 h~~~V~~lafspdg~~Las~s~Dg-----~V~IWdv~tg 1177 (1178)
.......+. .++++++.||.++ .|.+||+.++
T Consensus 241 ~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 241 CRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp CCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred ccccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 111111222 3678888888664 4899998875
No 296
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.49 E-value=0.0066 Score=67.41 Aligned_cols=223 Identities=8% Similarity=0.102 Sum_probs=124.3
Q ss_pred eEEEEeC--CCeEEEEeCCCCeEEEEec--CCCCCEEEEEEeCCCCEEEEEeCC----CeEEEEECCCCceEEE--EecC
Q 001042 936 RVLTASH--DGTVKMWDVRTDTCVATVG--RCSSAVLCMEYDDSTGILAAGGRD----AVANIWDIRAGRQMHK--FLGH 1005 (1178)
Q Consensus 936 ~l~sgs~--dg~V~iwd~~~~~~~~~~~--~~~~~I~~l~~sp~~~~l~sgs~d----g~I~lwD~~~~~~~~~--~~~~ 1005 (1178)
.++.|+. ...+..||..+++-...-. ........+. -++..++.|+.+ ..+.+||..+++-... +...
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 91 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP 91 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence 4455554 3578899998876443211 1111222222 256677777754 6788999988754332 2222
Q ss_pred CccEEEEEEcCCEEEEEeCC------CcEEEEEcCCCeeeeEec--cCCCcEEEEEEecCCCEEEEEeC---------CC
Q 001042 1006 TKWIRSIRMDRDTVITGSDD------WTARMWSISRGTCDAVLA--CHAGPVQCVEYSSSDRGIITGSS---------DG 1068 (1178)
Q Consensus 1006 ~~~v~~l~~~~~~l~sgs~d------g~I~iwd~~~~~~~~~~~--~h~~~I~~l~~spdg~~L~sgs~---------Dg 1068 (1178)
......+..++..++.|+.+ ..+.+||..+++....-. .....-..+. -+++.++.|+. -.
T Consensus 92 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~ 169 (306)
T 3ii7_A 92 RDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLN 169 (306)
T ss_dssp CBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECC
T ss_pred ccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccc
Confidence 22333444566666777654 458899988875433211 1111112222 25666677663 34
Q ss_pred cEEEEECCCCceEEEEEecccCCcEEEEecCCCEEEEEeCC-----CcEEEEEcCCCccccccCCCCCccceeEeeccCC
Q 001042 1069 LLRFWENDDGGIKCVKNVTIHSSAILSINAGDHWLGIGAAD-----NSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQK 1143 (1178)
Q Consensus 1069 ~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~Lasgs~D-----g~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~ 1143 (1178)
.+.+||..+..+..+............+..++++++.|+.+ ..+.+||..+. .|..+.....
T Consensus 170 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~-------------~W~~~~~~p~ 236 (306)
T 3ii7_A 170 SCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLN-------------EWKMVSPMPW 236 (306)
T ss_dssp CEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTT-------------EEEECCCCSC
T ss_pred eEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCC-------------cEEECCCCCC
Confidence 58899999886665544332222223334477777777654 45788888643 3444433322
Q ss_pred CcccEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCC
Q 001042 1144 TVAVVRCIASDLERKRICSGGRN-----GLLRLWEATIN 1177 (1178)
Q Consensus 1144 h~~~V~~lafspdg~~Las~s~D-----g~V~IWdv~tg 1177 (1178)
......++.+ ++++++.||.+ ..+.+||..++
T Consensus 237 ~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 237 KGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp CBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred CccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 2222223333 77888888854 46888888765
No 297
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.42 E-value=0.48 Score=58.08 Aligned_cols=196 Identities=5% Similarity=-0.086 Sum_probs=108.1
Q ss_pred CcceEEEEecCCCCcccccccc---eeecccccccCCCCCCCCCCCcCCcccccceEEecccccceEEEEeeeccceecc
Q 001042 768 GRSWVQSMFSREASSRSHSFSR---VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDL 844 (1178)
Q Consensus 768 ~~~i~~~aFSpdg~~las~~~d---I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fs~~~~~~~~ 844 (1178)
-.....++|++++..+..+... |+.++.++.. ....+.........|++.+
T Consensus 36 ~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~-------------------~~~v~~~g~~~P~GlAvD~------- 89 (628)
T 4a0p_A 36 VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSA-------------------LEHVVEFGLDYPEGMAVDW------- 89 (628)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-------------------CEEEECSSCSCCCEEEEET-------
T ss_pred CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCC-------------------cEEEEeCCCCCcceEEEEe-------
Confidence 3567889999977666554332 7777776543 1112222223455666641
Q ss_pred ccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeecccc-cceEEEecCCCEEEEEeC--CCcEEEEECCCCcEEEEecC
Q 001042 845 VGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHT-RTVRAINSDRGKVVSGSD--DQSVLVWDKQTSQLLEELKG 921 (1178)
Q Consensus 845 ~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~-~~V~~~s~d~~~l~sgs~--dg~I~iwd~~t~~~~~~l~~ 921 (1178)
..+++.++-...+.|.+.+++......+.. ..-. ..-.++.|....|+.+.. .+.|...+++.... ..+..
T Consensus 90 ----~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~-~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-~~l~~ 163 (628)
T 4a0p_A 90 ----LGKNLYWADTGTNRIEVSKLDGQHRQVLVW-KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-TTLVP 163 (628)
T ss_dssp ----TTTEEEEEETTTTEEEEEETTSTTCEEEEC-SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEEC
T ss_pred ----CCCEEEEEECCCCEEEEEecCCCcEEEEEe-CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-EEEEC
Confidence 345566666667889999876222111111 1111 122256776556655542 56777777765443 33333
Q ss_pred CCCceEEEEEe-CCCeEEEE-eCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Q 001042 922 HDAQVSCVRML-SGERVLTA-SHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGR 997 (1178)
Q Consensus 922 h~~~V~~l~~~-~~~~l~sg-s~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~ 997 (1178)
.-.....+++. +++.|+.+ ...+.|...|+..... ..+........++++.. +..+++-...+.|...|..+++
T Consensus 164 ~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 164 NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence 45567888888 45555554 4567888898865433 22323334455677654 3334444446667777655443
No 298
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.39 E-value=0.014 Score=64.62 Aligned_cols=222 Identities=9% Similarity=0.099 Sum_probs=123.4
Q ss_pred CEEEEEeC--CCcEEEEECCCCcEEEE--ecCCCCceEEEEEeCCCeEEEEeCC----CeEEEEeCCCCeEEEEecCC--
Q 001042 894 GKVVSGSD--DQSVLVWDKQTSQLLEE--LKGHDAQVSCVRMLSGERVLTASHD----GTVKMWDVRTDTCVATVGRC-- 963 (1178)
Q Consensus 894 ~~l~sgs~--dg~I~iwd~~t~~~~~~--l~~h~~~V~~l~~~~~~~l~sgs~d----g~V~iwd~~~~~~~~~~~~~-- 963 (1178)
..++.|+. ...+.+||..+++-... +...... .+++..++..++.|+.+ ..+.+||..+++-...-...
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 91 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRD-AACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP 91 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBS-CEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccce-eEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence 34555554 35788999888754321 1111111 22333466777777755 67889999888654332211
Q ss_pred CCCEEEEEEeCCCCEEEEEeCC------CeEEEEECCCCceEEE--EecCCccEEEEEEcCCEEEEEeC---------CC
Q 001042 964 SSAVLCMEYDDSTGILAAGGRD------AVANIWDIRAGRQMHK--FLGHTKWIRSIRMDRDTVITGSD---------DW 1026 (1178)
Q Consensus 964 ~~~I~~l~~sp~~~~l~sgs~d------g~I~lwD~~~~~~~~~--~~~~~~~v~~l~~~~~~l~sgs~---------dg 1026 (1178)
......+.+ ++..++.|+.+ ..+.+||..+.+-... +........++..++..++.|+. -.
T Consensus 92 r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 169 (306)
T 3ii7_A 92 RDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLN 169 (306)
T ss_dssp CBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECC
T ss_pred ccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccc
Confidence 122222222 66777777755 4689999987754332 11112222334456666666653 34
Q ss_pred cEEEEEcCCCeeeeEeccCCCc-EEEEEEecCCCEEEEEeCC-----CcEEEEECCCCceEEEEEecccCCcEEEEecCC
Q 001042 1027 TARMWSISRGTCDAVLACHAGP-VQCVEYSSSDRGIITGSSD-----GLLRFWENDDGGIKCVKNVTIHSSAILSINAGD 1100 (1178)
Q Consensus 1027 ~I~iwd~~~~~~~~~~~~h~~~-I~~l~~spdg~~L~sgs~D-----g~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg 1100 (1178)
.+.+||..+.+-...-...... -.+++.. +++.++.|+.+ ..+.+||..+.++..+..+........++.-++
T Consensus 170 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~ 248 (306)
T 3ii7_A 170 SCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGS 248 (306)
T ss_dssp CEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEETT
T ss_pred eEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEECC
Confidence 5889999887543321111111 1122222 56777777643 458899999886665544433322333344578
Q ss_pred CEEEEEeCC-----CcEEEEEcCC
Q 001042 1101 HWLGIGAAD-----NSMSLFHRPQ 1119 (1178)
Q Consensus 1101 ~~Lasgs~D-----g~I~iwd~~~ 1119 (1178)
.+++.|+.+ ..+.+||..+
T Consensus 249 ~i~v~GG~~~~~~~~~~~~yd~~~ 272 (306)
T 3ii7_A 249 IVYVLAGFQGVGRLGHILEYNTET 272 (306)
T ss_dssp EEEEEECBCSSSBCCEEEEEETTT
T ss_pred EEEEEeCcCCCeeeeeEEEEcCCC
Confidence 888888854 5688888864
No 299
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.38 E-value=0.14 Score=57.16 Aligned_cols=219 Identities=8% Similarity=-0.022 Sum_probs=130.5
Q ss_pred CCcEEEEcCCCCCceeeEeecccccc-eEEEecCCC-EEEEEeCCCcEEEEECCCCcEE-EEecCCCCceEEEEEe--CC
Q 001042 860 DCLVKIWDPSLRGSELRATLKGHTRT-VRAINSDRG-KVVSGSDDQSVLVWDKQTSQLL-EELKGHDAQVSCVRML--SG 934 (1178)
Q Consensus 860 Dg~I~iWd~~~~~~~~~~~l~~h~~~-V~~~s~d~~-~l~sgs~dg~I~iwd~~t~~~~-~~l~~h~~~V~~l~~~--~~ 934 (1178)
...|+..+++...........+-... ..++.+.++ .+++-...+.|..++...+... ..+...-.....+++. .+
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g 91 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE 91 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence 35688888873321222222222222 224565444 4455556788999998766321 2222223345667776 44
Q ss_pred CeEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEe--CCCeEEEEECCCCceEEEEecCCccEEEE
Q 001042 935 ERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGG--RDAVANIWDIRAGRQMHKFLGHTKWIRSI 1012 (1178)
Q Consensus 935 ~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs--~dg~I~lwD~~~~~~~~~~~~~~~~v~~l 1012 (1178)
..+++-...+.|.+++...................++++|.+..++.+. ..+.|...++............-.....+
T Consensus 92 ~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pngl 171 (318)
T 3sov_A 92 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGL 171 (318)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEE
T ss_pred eEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEE
Confidence 5555656678999999875543333334456678999999766666665 35788888876433322222334567888
Q ss_pred EEcC--CEEEEE-eCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 001042 1013 RMDR--DTVITG-SDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGG 1079 (1178)
Q Consensus 1013 ~~~~--~~l~sg-s~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~ 1079 (1178)
++++ +.|..+ +..+.|..+|+..........+......++++.. +..+++-...+.|..++..+|+
T Consensus 172 avd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 172 TLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred EEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCC
Confidence 8864 455544 4567899999864333222332345567788763 4556666677888888887774
No 300
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.38 E-value=0.056 Score=57.98 Aligned_cols=205 Identities=10% Similarity=0.106 Sum_probs=121.6
Q ss_pred EecCCCCCEEEEEEeCCCCEEE-EEeCCCeEEEEECCCCceEEEEec-CCccEEEEEEcCC--EEEEEeCCCcEEEEEcC
Q 001042 959 TVGRCSSAVLCMEYDDSTGILA-AGGRDAVANIWDIRAGRQMHKFLG-HTKWIRSIRMDRD--TVITGSDDWTARMWSIS 1034 (1178)
Q Consensus 959 ~~~~~~~~I~~l~~sp~~~~l~-sgs~dg~I~lwD~~~~~~~~~~~~-~~~~v~~l~~~~~--~l~sgs~dg~I~iwd~~ 1034 (1178)
.+.+....+..++|+|+++.|+ +...++.|...|.. ++.++.+.- .....-.+++.++ ++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 4456667899999999776555 57788999999998 888777642 2246677777443 44454467789998876
Q ss_pred CCee---eeEec------cCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCC----CceEEEEE--e----cccCCcEEE
Q 001042 1035 RGTC---DAVLA------CHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDD----GGIKCVKN--V----TIHSSAILS 1095 (1178)
Q Consensus 1035 ~~~~---~~~~~------~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~----~~~~~~~~--~----~~h~~~i~~ 1095 (1178)
.... +.... .......+++|+|.++.|+++.......+|.++. ........ + ......-.+
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 5442 12221 1234578999999998888877665556666541 11111111 0 011122344
Q ss_pred Eec-CCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeecc---CCCcccEEEEEEcCCCCEEEEEeCCCcEEE
Q 001042 1096 INA-GDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTP---QKTVAVVRCIASDLERKRICSGGRNGLLRL 1171 (1178)
Q Consensus 1096 is~-dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~---~~h~~~V~~lafspdg~~Las~s~Dg~V~I 1171 (1178)
++| .+.+++.....+.+..+|.... ....+.+.... ......-..|+|.++|++.++ ++...+.+
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~g~----------~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~ 248 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLVGE----------VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYR 248 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTTCC----------EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEEcCCCC----------EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEE
Confidence 454 4556666667778888887532 11111111110 011234678999999985554 66665555
Q ss_pred EECC
Q 001042 1172 WEAT 1175 (1178)
Q Consensus 1172 Wdv~ 1175 (1178)
+.-.
T Consensus 249 f~~~ 252 (255)
T 3qqz_A 249 FTPQ 252 (255)
T ss_dssp EEC-
T ss_pred EEec
Confidence 5433
No 301
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.37 E-value=0.047 Score=64.30 Aligned_cols=251 Identities=6% Similarity=-0.013 Sum_probs=141.2
Q ss_pred ceEEEEEeC--CCeEEEEeC-CCeEEEEeCCCCeEEEEecCC---CCCEEEEEE-------eCCCCEEEEEeCCC-----
Q 001042 925 QVSCVRMLS--GERVLTASH-DGTVKMWDVRTDTCVATVGRC---SSAVLCMEY-------DDSTGILAAGGRDA----- 986 (1178)
Q Consensus 925 ~V~~l~~~~--~~~l~sgs~-dg~V~iwd~~~~~~~~~~~~~---~~~I~~l~~-------sp~~~~l~sgs~dg----- 986 (1178)
....|++.+ ++.|+++.. .+.|++.|..++......... ......++| +++++.|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 456788873 455555544 577999999888766554332 235899999 99999777776554
Q ss_pred --eEEEEECCC-CceE-----EEEecCCccEEEEEEcC---CEEEEEeCCCcEEEEEcC-------CCee----------
Q 001042 987 --VANIWDIRA-GRQM-----HKFLGHTKWIRSIRMDR---DTVITGSDDWTARMWSIS-------RGTC---------- 1038 (1178)
Q Consensus 987 --~I~lwD~~~-~~~~-----~~~~~~~~~v~~l~~~~---~~l~sgs~dg~I~iwd~~-------~~~~---------- 1038 (1178)
.|.+++... +... ..+.. ......++.++ .++++-..++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 266666443 2221 12221 12334566654 355566678889999987 5543
Q ss_pred -eeE-ec-cCCCcEEEEEEecCCCEEE-EEeCCCcEEEEECCC--Cce---EEEEEecccC-------------Cc--EE
Q 001042 1039 -DAV-LA-CHAGPVQCVEYSSSDRGII-TGSSDGLLRFWENDD--GGI---KCVKNVTIHS-------------SA--IL 1094 (1178)
Q Consensus 1039 -~~~-~~-~h~~~I~~l~~spdg~~L~-sgs~Dg~I~iwd~~~--~~~---~~~~~~~~h~-------------~~--i~ 1094 (1178)
... +. +.......++|+|+|++|. +-+....|+.++.+. +.. ..+.-..+.. .+ ..
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv 378 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV 378 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence 112 11 2234568999999999644 445667888866543 311 1111110110 01 23
Q ss_pred EEe-------cCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCc-----c--cee-EeeccCCCcccEEEEEEcCC-CC
Q 001042 1095 SIN-------AGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKM-----S--GWQ-LYRTPQKTVAVVRCIASDLE-RK 1158 (1178)
Q Consensus 1095 ~is-------~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~-----~--~~~-~~~~~~~h~~~V~~lafspd-g~ 1158 (1178)
.+. .+|.+.++-+..+.|+.++. ++.+..+.+.|... . .+. -.......-..-..|+++++ |.
T Consensus 379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~ 457 (496)
T 3kya_A 379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEM 457 (496)
T ss_dssp EEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTE
T ss_pred EEccccccccCCCeEEEEECCCCEEEEEeC-CCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCE
Confidence 333 45566666666778888873 34443333332210 0 000 00001112234789999997 66
Q ss_pred EEEEEeCCCcEEEEECCCC
Q 001042 1159 RICSGGRNGLLRLWEATIN 1177 (1178)
Q Consensus 1159 ~Las~s~Dg~V~IWdv~tg 1177 (1178)
+.++=..+..||.++++..
T Consensus 458 lyVaD~~N~rIrki~~~~~ 476 (496)
T 3kya_A 458 FYVHDQVGHTIRTISMEQE 476 (496)
T ss_dssp EEEEETTTTEEEEEEECCC
T ss_pred EEEEeCCCCEEEEEECCCC
Confidence 6665566789999988754
No 302
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.34 E-value=0.012 Score=65.12 Aligned_cols=230 Identities=11% Similarity=0.082 Sum_probs=120.2
Q ss_pred CCEEEEEeCC----CcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEEeCC-----CcEEEEECCCCcEEEEecC
Q 001042 851 AGFFISGSTD----CLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDD-----QSVLVWDKQTSQLLEELKG 921 (1178)
Q Consensus 851 ~~~Lasgs~D----g~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sgs~d-----g~I~iwd~~t~~~~~~l~~ 921 (1178)
+.+++.|+.+ ..+..+|+..........+........+...++..++.|+.+ ..+.+||..+.+-...-..
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~ 95 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANM 95 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCC
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCC
Confidence 4455566543 357888876333222222221111112233466677777754 3588999887754332111
Q ss_pred C-CCceEEEEEeCCCeEEEEeCCC-----eEEEEeCCCCeEEEEec--CCCCCEEEEEEeCCCCEEEEEeCC-------C
Q 001042 922 H-DAQVSCVRMLSGERVLTASHDG-----TVKMWDVRTDTCVATVG--RCSSAVLCMEYDDSTGILAAGGRD-------A 986 (1178)
Q Consensus 922 h-~~~V~~l~~~~~~~l~sgs~dg-----~V~iwd~~~~~~~~~~~--~~~~~I~~l~~sp~~~~l~sgs~d-------g 986 (1178)
. ...-.+++..++..++.|+.++ .+.+||..+++-...-. .......++. -+++.++.|+.+ .
T Consensus 96 p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~ 173 (302)
T 2xn4_A 96 RDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV--VGGLLYAVGGYDVASRQCLS 173 (302)
T ss_dssp SSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEETTTTEECC
T ss_pred CccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE--ECCEEEEEeCCCCCCCcccc
Confidence 1 1111233334677777777653 57889988876443321 1111112222 256666666542 4
Q ss_pred eEEEEECCCCceEEE--EecCCccEEEEEEcCCEEEEEeCC-----CcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCC
Q 001042 987 VANIWDIRAGRQMHK--FLGHTKWIRSIRMDRDTVITGSDD-----WTARMWSISRGTCDAVLACHAGPVQCVEYSSSDR 1059 (1178)
Q Consensus 987 ~I~lwD~~~~~~~~~--~~~~~~~v~~l~~~~~~l~sgs~d-----g~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~ 1059 (1178)
.+.+||..+.+-... +.........+..++..++.|+.+ ..+.+||..+++....-..........+..-+++
T Consensus 174 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~ 253 (302)
T 2xn4_A 174 TVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGL 253 (302)
T ss_dssp CEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTE
T ss_pred EEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEECCE
Confidence 588999987654332 211222233445566677777654 3688999987754332111111111111222577
Q ss_pred EEEEEeCCC-----cEEEEECCCCceEE
Q 001042 1060 GIITGSSDG-----LLRFWENDDGGIKC 1082 (1178)
Q Consensus 1060 ~L~sgs~Dg-----~I~iwd~~~~~~~~ 1082 (1178)
.++.|+.++ .+.+||..+.++..
T Consensus 254 i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 281 (302)
T 2xn4_A 254 LYVVGGDDGSCNLASVEYYNPTTDKWTV 281 (302)
T ss_dssp EEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred EEEECCcCCCcccccEEEEcCCCCeEEE
Confidence 777777553 47888888775443
No 303
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.32 E-value=0.056 Score=58.00 Aligned_cols=195 Identities=6% Similarity=0.110 Sum_probs=123.0
Q ss_pred eecccccceEE--EecCCCEEE-EEeCCCcEEEEECCCCcEEEEecC-CCCceEEEEEeCCCeEE-EEeCCCeEEEEeCC
Q 001042 878 TLKGHTRTVRA--INSDRGKVV-SGSDDQSVLVWDKQTSQLLEELKG-HDAQVSCVRMLSGERVL-TASHDGTVKMWDVR 952 (1178)
Q Consensus 878 ~l~~h~~~V~~--~s~d~~~l~-sgs~dg~I~iwd~~t~~~~~~l~~-h~~~V~~l~~~~~~~l~-sgs~dg~V~iwd~~ 952 (1178)
.+.+-...+.. ++++++.|+ +...++.|...|.. ++.++.+.- -......+++..++.++ +.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 44455455654 467666555 46778899999988 888887742 23567788888555554 44467789998876
Q ss_pred CCeE---EEEec------CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC---CCceEEEEe-------cCCccEEEEE
Q 001042 953 TDTC---VATVG------RCSSAVLCMEYDDSTGILAAGGRDAVANIWDIR---AGRQMHKFL-------GHTKWIRSIR 1013 (1178)
Q Consensus 953 ~~~~---~~~~~------~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~---~~~~~~~~~-------~~~~~v~~l~ 1013 (1178)
.... +.... ..+.....++|+|+++.|+++.......+|.+. ....+.... .+...+.+++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 5432 22221 124457899999999877777765544555543 111222221 1223567888
Q ss_pred EcCC---EEEEEeCCCcEEEEEcCCCeeeeEeccCC---------CcEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 001042 1014 MDRD---TVITGSDDWTARMWSISRGTCDAVLACHA---------GPVQCVEYSSSDRGIITGSSDGLLRFWEN 1075 (1178)
Q Consensus 1014 ~~~~---~l~sgs~dg~I~iwd~~~~~~~~~~~~h~---------~~I~~l~~spdg~~L~sgs~Dg~I~iwd~ 1075 (1178)
+++. +++....++.+..+|.. |+.+..+.-.. ..-..++++++|+..++ +..+.++.+.-
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 8654 67777778889999965 55555543221 25689999999985555 66666666543
No 304
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.23 E-value=0.34 Score=60.84 Aligned_cols=219 Identities=7% Similarity=-0.064 Sum_probs=133.3
Q ss_pred CCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCC-eEEEEeCCCeEEEEeCCCC----eEEEEecCCCCCEEEEEEeC
Q 001042 901 DDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGE-RVLTASHDGTVKMWDVRTD----TCVATVGRCSSAVLCMEYDD 974 (1178)
Q Consensus 901 ~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~-~l~sgs~dg~V~iwd~~~~----~~~~~~~~~~~~I~~l~~sp 974 (1178)
....|+..++...+...... ....+..+++. .++ .+++-...+.|+.+++... .....+.........|++++
T Consensus 402 n~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~ 480 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 480 (791)
T ss_dssp CBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred cccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeee
Confidence 34568888887665544443 45567788887 344 4455556788999988753 22333433445667899998
Q ss_pred CCCEEE-EEeCCCeEEEEECCCCceEEEEecCCccEEEEEEcC--CEEEEEeC--CCcEEEEEcCCCeeeeEeccCCCcE
Q 001042 975 STGILA-AGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR--DTVITGSD--DWTARMWSISRGTCDAVLACHAGPV 1049 (1178)
Q Consensus 975 ~~~~l~-sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~--~~l~sgs~--dg~I~iwd~~~~~~~~~~~~h~~~I 1049 (1178)
.++.|+ +-...+.|.+.++........+.........|++++ ..|+.... .+.|...++........+...-...
T Consensus 481 ~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P 560 (791)
T 3m0c_C 481 IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP 560 (791)
T ss_dssp TTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCE
T ss_pred cCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCc
Confidence 775555 445678999999876554444444455688899865 35555542 3678888876444333333334578
Q ss_pred EEEEEecCCCEEEEEe-CCCcEEEEECCCCceEEEEEecccCCcEEEEecCCCEEEE-EeCCCcEEEEEcCCC
Q 001042 1050 QCVEYSSSDRGIITGS-SDGLLRFWENDDGGIKCVKNVTIHSSAILSINAGDHWLGI-GAADNSMSLFHRPQE 1120 (1178)
Q Consensus 1050 ~~l~~spdg~~L~sgs-~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~Las-gs~Dg~I~iwd~~~~ 1120 (1178)
+.|++++.+..|..+. ..+.|...+++......+....+.-....+++..+..|.. -...+.|...|..++
T Consensus 561 ~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 561 NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG 633 (791)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred eEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCC
Confidence 9999997766665554 5668999998766444433322222334455444444444 445577877776544
No 305
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.22 E-value=0.087 Score=58.79 Aligned_cols=181 Identities=10% Similarity=0.278 Sum_probs=118.4
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEeC-----CCe--E-EEEe-C--CCeEEEEeC--CCCeEE
Q 001042 891 SDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLS-----GER--V-LTAS-H--DGTVKMWDV--RTDTCV 957 (1178)
Q Consensus 891 ~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~~-----~~~--l-~sgs-~--dg~V~iwd~--~~~~~~ 957 (1178)
|....++.....+-+.+||+ +|+.+..+.. +.++.+..-+ +.. + ++.. . +++|.+|++ .++. +
T Consensus 38 p~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l 113 (355)
T 3amr_A 38 PQNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-L 113 (355)
T ss_dssp GGGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-E
T ss_pred CCccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-e
Confidence 34566777777889999999 7999888864 4556555432 222 2 3333 3 589999966 4443 5
Q ss_pred EEecC------CC-CCEEEEEE--eCC-CC-EEEEEeCCCeEEEEECC-------CCceEEEEecCCccEEEEEEcC--C
Q 001042 958 ATVGR------CS-SAVLCMEY--DDS-TG-ILAAGGRDAVANIWDIR-------AGRQMHKFLGHTKWIRSIRMDR--D 1017 (1178)
Q Consensus 958 ~~~~~------~~-~~I~~l~~--sp~-~~-~l~sgs~dg~I~lwD~~-------~~~~~~~~~~~~~~v~~l~~~~--~ 1017 (1178)
..+.. .. ..+..+|+ ++. +. ++++...+|.+..|++. +.+.++++... +.+..+..++ .
T Consensus 114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g 192 (355)
T 3amr_A 114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYG 192 (355)
T ss_dssp EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTT
T ss_pred eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCCC
Confidence 44422 11 45667777 774 43 67888889999999983 33456666543 4666777754 5
Q ss_pred EEEEEeCCCcEEEEEcC-----CCeeeeEec-cC-CCcEEEEEE--ecCCC-EEEEEe-CCCcEEEEECC
Q 001042 1018 TVITGSDDWTARMWSIS-----RGTCDAVLA-CH-AGPVQCVEY--SSSDR-GIITGS-SDGLLRFWEND 1076 (1178)
Q Consensus 1018 ~l~sgs~dg~I~iwd~~-----~~~~~~~~~-~h-~~~I~~l~~--spdg~-~L~sgs-~Dg~I~iwd~~ 1076 (1178)
.|+.+-++..|..++.+ +++.+..+. ++ ...+..+++ .++++ +|++++ .+++..+||..
T Consensus 193 ~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 193 RLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred eEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 89999998777666754 344554442 22 236888888 45555 666666 67789999996
No 306
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.16 E-value=0.85 Score=55.81 Aligned_cols=153 Identities=7% Similarity=-0.076 Sum_probs=82.2
Q ss_pred cEEEEEEc--CC-EEEEEeCCCcEEEEEcCCCeeeeEe-ccCCCcEEEEEEec-CCCEEEEEeCCC--cEEEEECCCCce
Q 001042 1008 WIRSIRMD--RD-TVITGSDDWTARMWSISRGTCDAVL-ACHAGPVQCVEYSS-SDRGIITGSSDG--LLRFWENDDGGI 1080 (1178)
Q Consensus 1008 ~v~~l~~~--~~-~l~sgs~dg~I~iwd~~~~~~~~~~-~~h~~~I~~l~~sp-dg~~L~sgs~Dg--~I~iwd~~~~~~ 1080 (1178)
.+..++++ ++ ..++-+..+.|.+.++. |+....+ ........+++++| .|.++++-.... .|...+++....
T Consensus 390 ~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~ 468 (628)
T 4a0p_A 390 QPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTER 468 (628)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSC
T ss_pred CcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCc
Confidence 45677774 23 45566677888888875 4444343 33446789999999 555555543333 566666665433
Q ss_pred EEEEEecccCCcEEEEecCCCEEEEEe-CCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCE
Q 001042 1081 KCVKNVTIHSSAILSINAGDHWLGIGA-ADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKR 1159 (1178)
Q Consensus 1081 ~~~~~~~~h~~~i~~is~dg~~Lasgs-~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~ 1159 (1178)
..+..-......-.+++++++.|..+. ..+.|...++... .. +.+.. .......+++... +.+
T Consensus 469 ~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~----------~r---~~~~~--~~~~~P~glav~~-~~l 532 (628)
T 4a0p_A 469 EVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGA----------NR---IVLED--SNILQPVGLTVFE-NWL 532 (628)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC----------SC---EEEEC--SSCSCEEEEEEET-TEE
T ss_pred EEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCC----------ce---EEEEc--CCCCCcEEEEEEC-CEE
Confidence 333221111222345577666666554 4578888887532 11 11111 1122245666644 444
Q ss_pred EEEEeCCCcEEEEECCCC
Q 001042 1160 ICSGGRNGLLRLWEATIN 1177 (1178)
Q Consensus 1160 Las~s~Dg~V~IWdv~tg 1177 (1178)
..+-...+.|...|..+|
T Consensus 533 y~tD~~~~~i~~~~k~~G 550 (628)
T 4a0p_A 533 YWIDKQQQMIEKIDMTGR 550 (628)
T ss_dssp EEEETTTTEEEEEETTSS
T ss_pred EEEECCCCeEEEEECcCC
Confidence 444445566666666554
No 307
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.14 E-value=0.27 Score=61.78 Aligned_cols=207 Identities=11% Similarity=-0.030 Sum_probs=127.0
Q ss_pred ccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCC--ceeeEeecc--cccceEEEecCCCEE-EEEeC
Q 001042 827 AGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRG--SELRATLKG--HTRTVRAINSDRGKV-VSGSD 901 (1178)
Q Consensus 827 ~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~--~~~~~~l~~--h~~~V~~~s~d~~~l-~sgs~ 901 (1178)
...+.+|+|.+ .++.++++-...+.|+.++++... ......+.. ....-.++.+.++.| ++-..
T Consensus 423 ~~~~~gl~~d~-----------~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~ 491 (791)
T 3m0c_C 423 LRNVVALDTEV-----------ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV 491 (791)
T ss_dssp CSSEEEEEEET-----------TTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETT
T ss_pred CCceEEEeecc-----------cCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecC
Confidence 45567888862 345566666667889989876211 112222221 222234667666554 45556
Q ss_pred CCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEe-CC-CeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCE
Q 001042 902 DQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTAS-HD-GTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGI 978 (1178)
Q Consensus 902 dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs-~d-g~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~ 978 (1178)
.+.|.+.+++.......+.........|++. .+..|+.+. .+ +.|...++........+...-.....|++++.+..
T Consensus 492 ~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~ 571 (791)
T 3m0c_C 492 LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGR 571 (791)
T ss_dssp TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTE
T ss_pred CCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCe
Confidence 7899999988655444444445567889987 345555544 33 78999998755544444444467899999987766
Q ss_pred EEEEe-CCCeEEEEECCCCceEEEEec--CCccEEEEEEcCCEEEEEe-CCCcEEEEEcCCCeeeeEecc
Q 001042 979 LAAGG-RDAVANIWDIRAGRQMHKFLG--HTKWIRSIRMDRDTVITGS-DDWTARMWSISRGTCDAVLAC 1044 (1178)
Q Consensus 979 l~sgs-~dg~I~lwD~~~~~~~~~~~~--~~~~v~~l~~~~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~ 1044 (1178)
|+.+. ..+.|...|+........... .-....+|++.++.|+.+. ..+.|...|..+|+.+..+..
T Consensus 572 LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG~~~~~l~~ 641 (791)
T 3m0c_C 572 LYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAE 641 (791)
T ss_dssp EEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred EEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCCcceEEeec
Confidence 66664 457899999865544333332 2234567777776655554 567788888777766666643
No 308
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.11 E-value=0.029 Score=62.48 Aligned_cols=222 Identities=9% Similarity=0.055 Sum_probs=120.5
Q ss_pred EEEEeCCCeEEEEeCCCCeEEEE-ecCCCCCEEEEEEeCCCCEEEEEeC-----C------CeEEEEECCCCceEEE--E
Q 001042 937 VLTASHDGTVKMWDVRTDTCVAT-VGRCSSAVLCMEYDDSTGILAAGGR-----D------AVANIWDIRAGRQMHK--F 1002 (1178)
Q Consensus 937 l~sgs~dg~V~iwd~~~~~~~~~-~~~~~~~I~~l~~sp~~~~l~sgs~-----d------g~I~lwD~~~~~~~~~--~ 1002 (1178)
++.|+ ..+..||..+++-... +..........+...++..++.|+. . ..+..||..+++-... +
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~ 85 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPL 85 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCB
T ss_pred EEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCC
Confidence 44555 5789999998875431 1111123333344457788888873 1 1278889887654221 1
Q ss_pred ecCCccEEEEEEcCCEEEEEeCC--------CcEEEEEcCCCeeeeE--eccCCCcEEEEEEecCCCEEEEEeC-C----
Q 001042 1003 LGHTKWIRSIRMDRDTVITGSDD--------WTARMWSISRGTCDAV--LACHAGPVQCVEYSSSDRGIITGSS-D---- 1067 (1178)
Q Consensus 1003 ~~~~~~v~~l~~~~~~l~sgs~d--------g~I~iwd~~~~~~~~~--~~~h~~~I~~l~~spdg~~L~sgs~-D---- 1067 (1178)
.........+..++..++.|+.+ ..+.+||..+++-... +......- +++ .-+++.++.|+. +
T Consensus 86 p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~ 163 (315)
T 4asc_A 86 PSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGH-TVL-SHMDLVYVIGGKGSDRKC 163 (315)
T ss_dssp SSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSC-EEE-EETTEEEEECCBCTTSCB
T ss_pred CcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccce-eEE-EECCEEEEEeCCCCCCcc
Confidence 11111222334455566666632 4588999887653221 11111111 122 235667777775 2
Q ss_pred -CcEEEEECCCCceEEEEEecccCCcEEEEecCCCEEEEEeCCC-----cEEEEEcCCCccccccCCCCCccceeEeecc
Q 001042 1068 -GLLRFWENDDGGIKCVKNVTIHSSAILSINAGDHWLGIGAADN-----SMSLFHRPQERLGGFSGTGSKMSGWQLYRTP 1141 (1178)
Q Consensus 1068 -g~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~Lasgs~Dg-----~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~ 1141 (1178)
..+.+||..+.++..+...........+...++++++.|+.++ .+.+||..+. .|..+...
T Consensus 164 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~-------------~W~~~~~~ 230 (315)
T 4asc_A 164 LNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDN-------------KWAPFEAF 230 (315)
T ss_dssp CCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTT-------------EEEEECCC
T ss_pred cceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCC-------------eEEECCCC
Confidence 4689999998866555443322222233445778888887654 4778887643 35544432
Q ss_pred CCCcccEEEEEEcCCCCEEEEEeCCC--------------cEEEEECCCC
Q 001042 1142 QKTVAVVRCIASDLERKRICSGGRNG--------------LLRLWEATIN 1177 (1178)
Q Consensus 1142 ~~h~~~V~~lafspdg~~Las~s~Dg--------------~V~IWdv~tg 1177 (1178)
.........+. -++++++.||.++ .|.+||++++
T Consensus 231 p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 231 PQERSSLSLVS--LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK 278 (315)
T ss_dssp SSCCBSCEEEE--ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred CCcccceeEEE--ECCEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence 22111122222 2677888887642 3678888765
No 309
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.10 E-value=0.012 Score=65.30 Aligned_cols=226 Identities=11% Similarity=0.073 Sum_probs=121.6
Q ss_pred CCCeEEEEeCC----CeEEEEeCCCCeEEEEec--CCCCCEEEEEEeCCCCEEEEEeC----C-----CeEEEEECCCCc
Q 001042 933 SGERVLTASHD----GTVKMWDVRTDTCVATVG--RCSSAVLCMEYDDSTGILAAGGR----D-----AVANIWDIRAGR 997 (1178)
Q Consensus 933 ~~~~l~sgs~d----g~V~iwd~~~~~~~~~~~--~~~~~I~~l~~sp~~~~l~sgs~----d-----g~I~lwD~~~~~ 997 (1178)
++..++.|+.+ ..+.+||..+++-...-. ...... +++. -++.+++.|+. + ..+.+||..+.+
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~ 101 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ 101 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence 44555556532 368889988776443211 111111 2222 25666777665 2 458899988765
Q ss_pred eEEE--EecCCccEEEEEEcCCEEEEEeCC-----CcEEEEEcCCCeeeeE--eccCCCcEEEEEEecCCCEEEEEeCC-
Q 001042 998 QMHK--FLGHTKWIRSIRMDRDTVITGSDD-----WTARMWSISRGTCDAV--LACHAGPVQCVEYSSSDRGIITGSSD- 1067 (1178)
Q Consensus 998 ~~~~--~~~~~~~v~~l~~~~~~l~sgs~d-----g~I~iwd~~~~~~~~~--~~~h~~~I~~l~~spdg~~L~sgs~D- 1067 (1178)
-... +.........+..++..++.|+.+ ..+.+||..+.+.... +......-..+.+ +++.++.|+.+
T Consensus 102 W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~ 179 (308)
T 1zgk_A 102 WSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDG 179 (308)
T ss_dssp EEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCS
T ss_pred EeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCC
Confidence 3222 111222333444566666666543 3588899887654322 1111111122222 56777777754
Q ss_pred ----CcEEEEECCCCceEEEEEecccCCcEEEEecCCCEEEEEeCC-----CcEEEEEcCCCccccccCCCCCccceeEe
Q 001042 1068 ----GLLRFWENDDGGIKCVKNVTIHSSAILSINAGDHWLGIGAAD-----NSMSLFHRPQERLGGFSGTGSKMSGWQLY 1138 (1178)
Q Consensus 1068 ----g~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~Lasgs~D-----g~I~iwd~~~~~~~~~~~~g~~~~~~~~~ 1138 (1178)
..+.+||..+.++..+...........++..++.+++.|+.+ ..+.+||+.+. .|..+
T Consensus 180 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~-------------~W~~~ 246 (308)
T 1zgk_A 180 TNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETE-------------TWTFV 246 (308)
T ss_dssp SCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT-------------EEEEC
T ss_pred CCcCceEEEEeCCCCeEeeCCCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCC-------------cEEEC
Confidence 458899998886555443332222223334477788888765 56888898743 34444
Q ss_pred eccCCCcccEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCC
Q 001042 1139 RTPQKTVAVVRCIASDLERKRICSGGRN-----GLLRLWEATIN 1177 (1178)
Q Consensus 1139 ~~~~~h~~~V~~lafspdg~~Las~s~D-----g~V~IWdv~tg 1177 (1178)
............+. -++++++.||.+ ..+.+||+.++
T Consensus 247 ~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 247 APMKHRRSALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp CCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCCCCCccceEEEE--ECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 33221111112222 267788888754 35788888765
No 310
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.10 E-value=0.07 Score=62.36 Aligned_cols=222 Identities=10% Similarity=0.069 Sum_probs=120.2
Q ss_pred C-CCCEEEEEeCCCcEEEEcCCCCCceeeEeecccc-cceEEEecCCCEEEEEeCC-C----cEEEEECCCCcEE--EEe
Q 001042 849 E-DAGFFISGSTDCLVKIWDPSLRGSELRATLKGHT-RTVRAINSDRGKVVSGSDD-Q----SVLVWDKQTSQLL--EEL 919 (1178)
Q Consensus 849 ~-d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~-~~V~~~s~d~~~l~sgs~d-g----~I~iwd~~t~~~~--~~l 919 (1178)
| ++..|..+...+.|+.+|.+ +..+........ ..-.+++++++.|+++... + .+.+.+ ..+... ..+
T Consensus 146 p~~~g~Lyv~d~~~~I~~id~~--~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~-~~g~~~~~~~l 222 (430)
T 3tc9_A 146 PKNHNHLYLVGEQHPTRLIDFE--KEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT-RESGFKVITEL 222 (430)
T ss_dssp TTEEEEEEEEEBTEEEEEEETT--TTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE-GGGTSCSEEEE
T ss_pred CCCCCeEEEEeCCCcEEEEECC--CCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe-CCCceeeeeee
Confidence 5 35556555555788889876 333322222222 2223678999966666542 2 233333 333221 222
Q ss_pred cCCCCceEEEEEeC-CCeEE-EEeCCCeEEEEeCCCCeEEEEecC-CCCCEEEEEEeCCCCEEEEE-eCCCeEEEEECCC
Q 001042 920 KGHDAQVSCVRMLS-GERVL-TASHDGTVKMWDVRTDTCVATVGR-CSSAVLCMEYDDSTGILAAG-GRDAVANIWDIRA 995 (1178)
Q Consensus 920 ~~h~~~V~~l~~~~-~~~l~-sgs~dg~V~iwd~~~~~~~~~~~~-~~~~I~~l~~sp~~~~l~sg-s~dg~I~lwD~~~ 995 (1178)
.. ......+++.+ +..++ +-..++.|..++..++........ .......++++|+|++++.+ ...+.|..++...
T Consensus 223 ~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 223 TK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp EE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred cc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 21 23356677774 44444 445678999999987765322222 22456889999999955544 4678899987653
Q ss_pred --Cce--EEEEecC---------------CccEE-EEEEc----------CCEEEEEeCCCcEEEEEcCCCeeeeEeccC
Q 001042 996 --GRQ--MHKFLGH---------------TKWIR-SIRMD----------RDTVITGSDDWTARMWSISRGTCDAVLACH 1045 (1178)
Q Consensus 996 --~~~--~~~~~~~---------------~~~v~-~l~~~----------~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h 1045 (1178)
++. ...+.+. -.... .++.+ ++..++-...+.|+.++ .+|.... +.+.
T Consensus 302 ~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~v~~-~~g~ 379 (430)
T 3tc9_A 302 KTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGRVTT-FAGR 379 (430)
T ss_dssp TTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSEEEE-EEEC
T ss_pred ccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCcEEE-EEeC
Confidence 221 1222211 01122 34442 22334434566788887 4454332 2221
Q ss_pred ---------C---------CcEEEEEEecC-CCEEEEEeCCCcEEEEECC
Q 001042 1046 ---------A---------GPVQCVEYSSS-DRGIITGSSDGLLRFWEND 1076 (1178)
Q Consensus 1046 ---------~---------~~I~~l~~spd-g~~L~sgs~Dg~I~iwd~~ 1076 (1178)
. .....++++++ +.++++-..++.|+.++.+
T Consensus 380 g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 380 GSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp CTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 1 14788999984 5555555566777777653
No 311
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.09 E-value=0.076 Score=58.73 Aligned_cols=158 Identities=8% Similarity=0.057 Sum_probs=106.1
Q ss_pred cCCCCceEEEEEe-CCCeEEEEe-CCCeEEEEeCCCCeEEEE-ecC----C--CCCEEEEEE---eCCCCEEEEEe----
Q 001042 920 KGHDAQVSCVRML-SGERVLTAS-HDGTVKMWDVRTDTCVAT-VGR----C--SSAVLCMEY---DDSTGILAAGG---- 983 (1178)
Q Consensus 920 ~~h~~~V~~l~~~-~~~~l~sgs-~dg~V~iwd~~~~~~~~~-~~~----~--~~~I~~l~~---sp~~~~l~sgs---- 983 (1178)
......-.++.|. ....++.++ ..|+|..||...+..... +.. . ...+..+.+ +++++++++..
T Consensus 9 ~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~a 88 (334)
T 2p9w_A 9 KVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKS 88 (334)
T ss_dssp CCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTT
T ss_pred cCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccc
Confidence 3444455678887 456666666 799999999976654333 221 1 114689999 68877777544
Q ss_pred ---------CCCeEEEEECC---CCceEEEEe--cC-----------CccEEEEEEc--CCEEEEEeCC-CcEEEEEcCC
Q 001042 984 ---------RDAVANIWDIR---AGRQMHKFL--GH-----------TKWIRSIRMD--RDTVITGSDD-WTARMWSISR 1035 (1178)
Q Consensus 984 ---------~dg~I~lwD~~---~~~~~~~~~--~~-----------~~~v~~l~~~--~~~l~sgs~d-g~I~iwd~~~ 1035 (1178)
.+..+..||+. +++.+.... .. ......++.+ ++..++++.. +.|..++..
T Consensus 89 f~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd- 167 (334)
T 2p9w_A 89 FNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD- 167 (334)
T ss_dssp TCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT-
T ss_pred ccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC-
Confidence 26789999999 787765543 11 1247788884 5677777777 777777754
Q ss_pred CeeeeEec------cCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 001042 1036 GTCDAVLA------CHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDG 1078 (1178)
Q Consensus 1036 ~~~~~~~~------~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~ 1078 (1178)
|+....+. ......+.++++|+|+.|++...+|.+..+|+.+.
T Consensus 168 G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 168 GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence 33333321 11223679999999999988877999999998854
No 312
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.02 E-value=0.024 Score=62.97 Aligned_cols=233 Identities=12% Similarity=0.065 Sum_probs=123.9
Q ss_pred CCCCEEEEEeCC----CcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEEeC----C-----CcEEEEECCCCcE
Q 001042 849 EDAGFFISGSTD----CLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSD----D-----QSVLVWDKQTSQL 915 (1178)
Q Consensus 849 ~d~~~Lasgs~D----g~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sgs~----d-----g~I~iwd~~t~~~ 915 (1178)
-++.+++.|+.+ ..+.++|...........+........+...++..++.|+. + ..+.+||..+.+-
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W 102 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW 102 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEE
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeE
Confidence 456777777742 36888887633332222221111111223346666777665 2 4688899887654
Q ss_pred EEE--ecCCCCceEEEEEeCCCeEEEEeCC-----CeEEEEeCCCCeEEEEec--CCCCCEEEEEEeCCCCEEEEEeCC-
Q 001042 916 LEE--LKGHDAQVSCVRMLSGERVLTASHD-----GTVKMWDVRTDTCVATVG--RCSSAVLCMEYDDSTGILAAGGRD- 985 (1178)
Q Consensus 916 ~~~--l~~h~~~V~~l~~~~~~~l~sgs~d-----g~V~iwd~~~~~~~~~~~--~~~~~I~~l~~sp~~~~l~sgs~d- 985 (1178)
... +...... .+++..++..++.|+.+ ..+.+||..+++-...-. .......++.+ ++.+++.|+.+
T Consensus 103 ~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~ 179 (308)
T 1zgk_A 103 SPCAPMSVPRNR-IGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDG 179 (308)
T ss_dssp EECCCCSSCCBT-CEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCS
T ss_pred eECCCCCcCccc-cEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCC
Confidence 322 1111111 22333366667776643 468899998876433211 11112222222 56777777654
Q ss_pred ----CeEEEEECCCCceEEE--EecCCccEEEEEEcCCEEEEEeCC-----CcEEEEEcCCCeeeeE--eccCCCcEEEE
Q 001042 986 ----AVANIWDIRAGRQMHK--FLGHTKWIRSIRMDRDTVITGSDD-----WTARMWSISRGTCDAV--LACHAGPVQCV 1052 (1178)
Q Consensus 986 ----g~I~lwD~~~~~~~~~--~~~~~~~v~~l~~~~~~l~sgs~d-----g~I~iwd~~~~~~~~~--~~~h~~~I~~l 1052 (1178)
..+.+||..+.+-... +........++..++..++.|+.+ ..+.+||+.+.+.... +.........+
T Consensus 180 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~ 259 (308)
T 1zgk_A 180 TNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGIT 259 (308)
T ss_dssp SCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEE
T ss_pred CCcCceEEEEeCCCCeEeeCCCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEE
Confidence 4588999887653322 111222233444566667777654 4689999987654322 11111111222
Q ss_pred EEecCCCEEEEEeCC-----CcEEEEECCCCceEEEEEe
Q 001042 1053 EYSSSDRGIITGSSD-----GLLRFWENDDGGIKCVKNV 1086 (1178)
Q Consensus 1053 ~~spdg~~L~sgs~D-----g~I~iwd~~~~~~~~~~~~ 1086 (1178)
. -+++.++.|+.+ ..+.+||..+.++..+..+
T Consensus 260 ~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 296 (308)
T 1zgk_A 260 V--HQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRM 296 (308)
T ss_dssp E--ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEEC
T ss_pred E--ECCEEEEEcCcCCCcccceEEEEcCCCCEEeecCCC
Confidence 2 257777777754 3578899888866655443
No 313
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.01 E-value=0.055 Score=60.15 Aligned_cols=218 Identities=7% Similarity=0.049 Sum_probs=118.7
Q ss_pred EEEEeCCCcEEEEECCCCcEEE-EecCC-CCceEEEEEeCCCeEEEEeC-----C------CeEEEEeCCCCeEEEEecC
Q 001042 896 VVSGSDDQSVLVWDKQTSQLLE-ELKGH-DAQVSCVRMLSGERVLTASH-----D------GTVKMWDVRTDTCVATVGR 962 (1178)
Q Consensus 896 l~sgs~dg~I~iwd~~t~~~~~-~l~~h-~~~V~~l~~~~~~~l~sgs~-----d------g~V~iwd~~~~~~~~~~~~ 962 (1178)
++.|+ ..+.+||..+++-.. .+... ...-.+++..++..++.|+. . ..+..||..+++-.. +..
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-~~~ 84 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG-MPP 84 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE-CCC
T ss_pred EEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEE-CCC
Confidence 34455 578999998877533 22211 12223333347777778873 1 237889988876432 211
Q ss_pred CCCCE--EEEEEeCCCCEEEEEeCC--------CeEEEEECCCCceEEE--EecCCccEEEEEEcCCEEEEEeC-C----
Q 001042 963 CSSAV--LCMEYDDSTGILAAGGRD--------AVANIWDIRAGRQMHK--FLGHTKWIRSIRMDRDTVITGSD-D---- 1025 (1178)
Q Consensus 963 ~~~~I--~~l~~sp~~~~l~sgs~d--------g~I~lwD~~~~~~~~~--~~~~~~~v~~l~~~~~~l~sgs~-d---- 1025 (1178)
...+- .+++.. ++..++.|+.+ ..+.+||..+++-... +........++..++..++.|+. +
T Consensus 85 ~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~ 163 (315)
T 4asc_A 85 LPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKC 163 (315)
T ss_dssp BSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCB
T ss_pred CCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcc
Confidence 11111 112222 56666777632 4588999987653221 11222223344456666667765 2
Q ss_pred -CcEEEEEcCCCeeeeE--eccCCCcEEEEEEecCCCEEEEEeCCC-----cEEEEECCCCceEEEEEecccCCcEEEEe
Q 001042 1026 -WTARMWSISRGTCDAV--LACHAGPVQCVEYSSSDRGIITGSSDG-----LLRFWENDDGGIKCVKNVTIHSSAILSIN 1097 (1178)
Q Consensus 1026 -g~I~iwd~~~~~~~~~--~~~h~~~I~~l~~spdg~~L~sgs~Dg-----~I~iwd~~~~~~~~~~~~~~h~~~i~~is 1097 (1178)
..+.+||..+.+-... +......-.++. -+++.++.|+.++ .+.+||..+.++..+...........++.
T Consensus 164 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~ 241 (315)
T 4asc_A 164 LNKMCVYDPKKFEWKELAPMQTARSLFGATV--HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVS 241 (315)
T ss_dssp CCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred cceEEEEeCCCCeEEECCCCCCchhceEEEE--ECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEE
Confidence 4688999887654322 111111112222 2677778887654 48899999886666554433222223344
Q ss_pred cCCCEEEEEeCCC--------------cEEEEEcCC
Q 001042 1098 AGDHWLGIGAADN--------------SMSLFHRPQ 1119 (1178)
Q Consensus 1098 ~dg~~Lasgs~Dg--------------~I~iwd~~~ 1119 (1178)
.++++++.|+.++ .+.+||+.+
T Consensus 242 ~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~ 277 (315)
T 4asc_A 242 LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEE 277 (315)
T ss_dssp ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTT
T ss_pred ECCEEEEECCccccCcCCccccccccCcEEEecCCC
Confidence 5778888877642 367778763
No 314
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.88 E-value=0.18 Score=56.27 Aligned_cols=187 Identities=13% Similarity=0.195 Sum_probs=114.0
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEc------CC---EEEEEe-C--CCcEEEEEcC--CCeeee
Q 001042 975 STGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMD------RD---TVITGS-D--DWTARMWSIS--RGTCDA 1040 (1178)
Q Consensus 975 ~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~------~~---~l~sgs-~--dg~I~iwd~~--~~~~~~ 1040 (1178)
....++.....+-+.+||+ +|+.+..+.. +.++.+..- +. .+++.. . +++|.+|++. +++ +.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~ 114 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ 114 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence 4456666677889999999 8888888753 445555442 32 223333 3 5789999773 333 44
Q ss_pred Eecc------CC-CcEEEEEE--ecC-CC-EEEEEeCCCcEEEEECC---CC--ceEEEEEecccCCcEEE-EecCCCEE
Q 001042 1041 VLAC------HA-GPVQCVEY--SSS-DR-GIITGSSDGLLRFWEND---DG--GIKCVKNVTIHSSAILS-INAGDHWL 1103 (1178)
Q Consensus 1041 ~~~~------h~-~~I~~l~~--spd-g~-~L~sgs~Dg~I~iwd~~---~~--~~~~~~~~~~h~~~i~~-is~dg~~L 1103 (1178)
.+.. .. ..+..+++ ++. ++ ++++...+|.+..|++. .+ ..+.+.++......--+ +.+....|
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~L 194 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRL 194 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEE
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeE
Confidence 4421 11 45667777 664 44 67788889999999983 33 23455666544433333 36778899
Q ss_pred EEEeCCCcEEEEEcCCCccccccCCCCCccceeEeecc-CCCc-ccEEEEEE--cCCCC-EEEEEe-CCCcEEEEECC
Q 001042 1104 GIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTP-QKTV-AVVRCIAS--DLERK-RICSGG-RNGLLRLWEAT 1175 (1178)
Q Consensus 1104 asgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~-~~h~-~~V~~laf--spdg~-~Las~s-~Dg~V~IWdv~ 1175 (1178)
..+-++..|..++.... .+... +.+... .++- ..+..|+. .++|+ +|++++ .+.+..+||..
T Consensus 195 yv~eEd~GIw~~da~p~-------~~~~~---~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 195 YIAEEDEAIWKFSAEPD-------GGSNG---TVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEETTTEEEEEECSTT-------SCSCC---EEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EEecccceEEEEeCCcC-------CCCCc---eEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 99999876666664321 11110 222222 2222 36888887 56666 555555 57799999986
No 315
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.81 E-value=0.13 Score=57.19 Aligned_cols=218 Identities=10% Similarity=0.054 Sum_probs=115.9
Q ss_pred eEEEEeCCCCeEEEE-ecCCCCCEEEEEEeCCCCEEEEEeC----CC-------eEEEEECCCCceEEE--EecCCccEE
Q 001042 945 TVKMWDVRTDTCVAT-VGRCSSAVLCMEYDDSTGILAAGGR----DA-------VANIWDIRAGRQMHK--FLGHTKWIR 1010 (1178)
Q Consensus 945 ~V~iwd~~~~~~~~~-~~~~~~~I~~l~~sp~~~~l~sgs~----dg-------~I~lwD~~~~~~~~~--~~~~~~~v~ 1010 (1178)
.+..||..+++.... ...........+...++..++.|+. ++ .+..||..+++-... +........
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 104 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFG 104 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCE
T ss_pred ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccc
Confidence 478999988875442 1111122223334457778888873 12 277889877654322 111122233
Q ss_pred EEEEcCCEEEEEeCC-------CcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeC------CCcEEEEECCC
Q 001042 1011 SIRMDRDTVITGSDD-------WTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSS------DGLLRFWENDD 1077 (1178)
Q Consensus 1011 ~l~~~~~~l~sgs~d-------g~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~------Dg~I~iwd~~~ 1077 (1178)
.+..++..++.|+.+ ..+.+||..+.+-...-..........+...+++.++.|+. -..+.+||..+
T Consensus 105 ~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~ 184 (318)
T 2woz_A 105 LGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKK 184 (318)
T ss_dssp EEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTT
T ss_pred eEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCC
Confidence 344566666666653 24788898876543321111111111111245677777763 23589999998
Q ss_pred CceEEEEEecccCCcEEEEecCCCEEEEEeCC-----CcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEE
Q 001042 1078 GGIKCVKNVTIHSSAILSINAGDHWLGIGAAD-----NSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIA 1152 (1178)
Q Consensus 1078 ~~~~~~~~~~~h~~~i~~is~dg~~Lasgs~D-----g~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~la 1152 (1178)
.++..+...........+...++++++.|+.+ ..+.+||..+. .|..+............+.
T Consensus 185 ~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~-------------~W~~~~~~p~~r~~~~~~~ 251 (318)
T 2woz_A 185 GDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTN-------------KWEVMTEFPQERSSISLVS 251 (318)
T ss_dssp TEEEEECCCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTC-------------CEEECCCCSSCCBSCEEEE
T ss_pred CEEEECCCCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCC-------------eEEECCCCCCcccceEEEE
Confidence 86665544332222223334577888887654 34677887643 3444433222111112222
Q ss_pred EcCCCCEEEEEeCC--------------CcEEEEECCCC
Q 001042 1153 SDLERKRICSGGRN--------------GLLRLWEATIN 1177 (1178)
Q Consensus 1153 fspdg~~Las~s~D--------------g~V~IWdv~tg 1177 (1178)
.++++++.||.+ ..+.+||+.++
T Consensus 252 --~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 288 (318)
T 2woz_A 252 --LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK 288 (318)
T ss_dssp --ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred --ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence 357777877754 35788888765
No 316
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.66 E-value=0.25 Score=57.70 Aligned_cols=187 Identities=7% Similarity=-0.011 Sum_probs=110.2
Q ss_pred EEecC--CCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEeCCC-----eEEEEeCCCCeE-EE
Q 001042 888 AINSD--RGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDG-----TVKMWDVRTDTC-VA 958 (1178)
Q Consensus 888 ~~s~d--~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg-----~V~iwd~~~~~~-~~ 958 (1178)
+++++ +..|+.+...+.|+.+|..+++.... .........+++. +++ ++.+...+ .+...+...+.. ..
T Consensus 145 avd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~ 222 (433)
T 4hw6_A 145 MFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERL 222 (433)
T ss_dssp EECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEE
T ss_pred EEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeeccc
Confidence 56663 45666665558999999987776544 3455668899998 556 55555422 233333222211 01
Q ss_pred EecCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCceEEEEec--CCccEEEEEEc--CCEEEEE-eCCCcEEEEE
Q 001042 959 TVGRCSSAVLCMEYDD-STGILAAGGRDAVANIWDIRAGRQMHKFLG--HTKWIRSIRMD--RDTVITG-SDDWTARMWS 1032 (1178)
Q Consensus 959 ~~~~~~~~I~~l~~sp-~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~--~~~~v~~l~~~--~~~l~sg-s~dg~I~iwd 1032 (1178)
.+. .-.....+++++ ++.+.++-..++.|+.+|..++.....+.. .......++++ ++.|..+ ...+.|+.++
T Consensus 223 ~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~ 301 (433)
T 4hw6_A 223 SLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVD 301 (433)
T ss_dssp EEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEe
Confidence 111 123446788999 666655655778999999987766333321 22233457775 4445444 4567899988
Q ss_pred cCC--Cee--eeEeccC---------------CCcEEEEEE---------ecCCCEEEEEeCCCcEEEEECCCC
Q 001042 1033 ISR--GTC--DAVLACH---------------AGPVQCVEY---------SSSDRGIITGSSDGLLRFWENDDG 1078 (1178)
Q Consensus 1033 ~~~--~~~--~~~~~~h---------------~~~I~~l~~---------spdg~~L~sgs~Dg~I~iwd~~~~ 1078 (1178)
... +.. ...+.+. -.....+++ .++|.+.++-...+.|+.++. +|
T Consensus 302 ~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G 374 (433)
T 4hw6_A 302 YNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG 374 (433)
T ss_dssp BCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS
T ss_pred CCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC
Confidence 652 321 1222221 123567898 677777777767788998885 45
No 317
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.66 E-value=0.036 Score=61.33 Aligned_cols=162 Identities=8% Similarity=-0.018 Sum_probs=104.3
Q ss_pred CCccEEEEEEcC--CEEEEEe-CCCcEEEEEcCCCeeeeEeccC-------CCcEEEEEE---ecCCCEEEEEe------
Q 001042 1005 HTKWIRSIRMDR--DTVITGS-DDWTARMWSISRGTCDAVLACH-------AGPVQCVEY---SSSDRGIITGS------ 1065 (1178)
Q Consensus 1005 ~~~~v~~l~~~~--~~l~sgs-~dg~I~iwd~~~~~~~~~~~~h-------~~~I~~l~~---spdg~~L~sgs------ 1065 (1178)
......++.|+. ..+..++ ..|+|..||...+......... ...+.++.| .|+++++++..
T Consensus 11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~ 90 (334)
T 2p9w_A 11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFN 90 (334)
T ss_dssp TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTC
T ss_pred cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccc
Confidence 333445778864 4666666 7899999998755433332211 114689999 68887777543
Q ss_pred -------CCCcEEEEECC---CCceEEEEEecccC-----------CcE--EEEecCCCEEEEEeCC-CcEEEEEcCCCc
Q 001042 1066 -------SDGLLRFWEND---DGGIKCVKNVTIHS-----------SAI--LSINAGDHWLGIGAAD-NSMSLFHRPQER 1121 (1178)
Q Consensus 1066 -------~Dg~I~iwd~~---~~~~~~~~~~~~h~-----------~~i--~~is~dg~~Lasgs~D-g~I~iwd~~~~~ 1121 (1178)
.+..|..+|+. +++......+.... ... ..+.++|+..++++.. +.|...+..
T Consensus 91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd--- 167 (334)
T 2p9w_A 91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD--- 167 (334)
T ss_dssp TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT---
T ss_pred ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC---
Confidence 26779999999 77555555543221 123 3347889988888877 776666653
Q ss_pred cccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001042 1122 LGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATI 1176 (1178)
Q Consensus 1122 ~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~t 1176 (1178)
|.....|-............+.++++|||+.|+....+|.+..+|+.+
T Consensus 168 -------G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 168 -------GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp -------SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred -------CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 333333432221122233467899999999999887799999998753
No 318
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.62 E-value=0.11 Score=57.90 Aligned_cols=212 Identities=10% Similarity=0.073 Sum_probs=113.5
Q ss_pred cEEEEECCCCcEEE-EecC-CCCceEEEEEeCCCeEEEEeC----CC-------eEEEEeCCCCeEEEEec--CCCCCEE
Q 001042 904 SVLVWDKQTSQLLE-ELKG-HDAQVSCVRMLSGERVLTASH----DG-------TVKMWDVRTDTCVATVG--RCSSAVL 968 (1178)
Q Consensus 904 ~I~iwd~~t~~~~~-~l~~-h~~~V~~l~~~~~~~l~sgs~----dg-------~V~iwd~~~~~~~~~~~--~~~~~I~ 968 (1178)
.+..||..+++-.. .... ....-.+++..++..++.|+. ++ .+..||..+++-...-. .......
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 104 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFG 104 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCE
T ss_pred ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccc
Confidence 47889998876543 1221 112223344446777777773 12 27788988776533211 1111112
Q ss_pred EEEEeCCCCEEEEEeCC-------CeEEEEECCCCceEEE--EecCCccEEEEEEcCCEEEEEeC------CCcEEEEEc
Q 001042 969 CMEYDDSTGILAAGGRD-------AVANIWDIRAGRQMHK--FLGHTKWIRSIRMDRDTVITGSD------DWTARMWSI 1033 (1178)
Q Consensus 969 ~l~~sp~~~~l~sgs~d-------g~I~lwD~~~~~~~~~--~~~~~~~v~~l~~~~~~l~sgs~------dg~I~iwd~ 1033 (1178)
.+.+ ++..++.|+.+ ..+.+||..+.+-... +......-.++..++..++.|+. -..+.+||.
T Consensus 105 ~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~ 182 (318)
T 2woz_A 105 LGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNP 182 (318)
T ss_dssp EEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEET
T ss_pred eEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcC
Confidence 2222 56777777753 3588899887654332 11111122233445666666653 235899999
Q ss_pred CCCeeeeEec--cCCCcEEEEEEecCCCEEEEEeCC-----CcEEEEECCCCceEEEEEecccCCcEEEEecCCCEEEEE
Q 001042 1034 SRGTCDAVLA--CHAGPVQCVEYSSSDRGIITGSSD-----GLLRFWENDDGGIKCVKNVTIHSSAILSINAGDHWLGIG 1106 (1178)
Q Consensus 1034 ~~~~~~~~~~--~h~~~I~~l~~spdg~~L~sgs~D-----g~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~Lasg 1106 (1178)
.+.+-...-. ...... +++. -+++.++.|+.+ ..+.+||..+.++..+............+..++++++.|
T Consensus 183 ~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~G 260 (318)
T 2woz_A 183 KKGDWKDLAPMKTPRSMF-GVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSLAGSLYAIG 260 (318)
T ss_dssp TTTEEEEECCCSSCCBSC-EEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEETTEEEEEC
T ss_pred CCCEEEECCCCCCCcccc-eEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEEECCEEEEEC
Confidence 8875433211 111111 2222 256777777643 347789998887666554433322223344577777777
Q ss_pred eCC--------------CcEEEEEcCC
Q 001042 1107 AAD--------------NSMSLFHRPQ 1119 (1178)
Q Consensus 1107 s~D--------------g~I~iwd~~~ 1119 (1178)
+.+ ..+.+||..+
T Consensus 261 G~~~~~~~~~~~~~~~~~~v~~yd~~~ 287 (318)
T 2woz_A 261 GFAMIQLESKEFAPTEVNDIWKYEDDK 287 (318)
T ss_dssp CBCCBC----CCBCCBCCCEEEEETTT
T ss_pred CeeccCCCCceeccceeeeEEEEeCCC
Confidence 754 3577778763
No 319
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.54 E-value=0.0091 Score=74.56 Aligned_cols=214 Identities=11% Similarity=-0.059 Sum_probs=116.2
Q ss_pred ceEEEEeeeccceeccccccCCCCEE-EEEeCCCcEEEEcCCCC--CceeeEeeccc--ccceEEEecCC-CEEEEEeCC
Q 001042 829 AITALHCVTKREVWDLVGDREDAGFF-ISGSTDCLVKIWDPSLR--GSELRATLKGH--TRTVRAINSDR-GKVVSGSDD 902 (1178)
Q Consensus 829 ~V~~l~fs~~~~~~~~~~~s~d~~~L-asgs~Dg~I~iWd~~~~--~~~~~~~l~~h--~~~V~~~s~d~-~~l~sgs~d 902 (1178)
.+.+|+|. +++..| ++-...+.|+.+++... +......+... ...-.++.+.+ +.+++-...
T Consensus 407 ~p~gla~d------------~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~ 474 (699)
T 1n7d_A 407 NVVALDTE------------VASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVL 474 (699)
T ss_dssp TCCCCEEE------------TTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTT
T ss_pred ceEEEccc------------cccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccC
Confidence 35567776 544444 44455678999887620 01111111111 11112455444 444554567
Q ss_pred CcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEEe-CC-CeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEE
Q 001042 903 QSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTAS-HD-GTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGIL 979 (1178)
Q Consensus 903 g~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs-~d-g~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l 979 (1178)
+.|.++++........+.........+++. .+..|+.+. .. +.|..+++............-.....|++++++..|
T Consensus 475 ~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~L 554 (699)
T 1n7d_A 475 GTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRL 554 (699)
T ss_dssp SCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCE
T ss_pred CeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEE
Confidence 889999987655443333333445677776 344444433 22 678877775433222222223446789999876555
Q ss_pred EEE-eCCCeEEEEECCCCceEEEEe--cCCccEEEEEEcCCEEE-EEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEE
Q 001042 980 AAG-GRDAVANIWDIRAGRQMHKFL--GHTKWIRSIRMDRDTVI-TGSDDWTARMWSISRGTCDAVLACHAGPVQCVEY 1054 (1178)
Q Consensus 980 ~sg-s~dg~I~lwD~~~~~~~~~~~--~~~~~v~~l~~~~~~l~-sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~ 1054 (1178)
+.+ +..+.|..+|+........+. ........++++++.++ +....+.|..+|..+++.+..+.......+.+++
T Consensus 555 Y~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~v 633 (699)
T 1n7d_A 555 YWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVL 633 (699)
T ss_dssp EEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEECCCTTCSSCCCCCB
T ss_pred EEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCceEEeecCCCCCcEEEE
Confidence 544 456789999986533322222 11234456667666544 4445678999998888777666533333344433
No 320
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.39 E-value=0.006 Score=76.22 Aligned_cols=219 Identities=8% Similarity=-0.026 Sum_probs=119.5
Q ss_pred CCcEEEEECCCCcEEEEecCCCCceEEEEEe-CCCeEEEE-eCCCeEEEEeCCC----CeEEEEecCCCCCEEEEEEeCC
Q 001042 902 DQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTA-SHDGTVKMWDVRT----DTCVATVGRCSSAVLCMEYDDS 975 (1178)
Q Consensus 902 dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~-~~~~l~sg-s~dg~V~iwd~~~----~~~~~~~~~~~~~I~~l~~sp~ 975 (1178)
.+.|+..++.+.+....+.. ...+..++|. .++.|+.+ ...+.|..+++.+ ......+.........+++++.
T Consensus 385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 35677788776665443332 3456678887 35555544 4567899998875 2221122111223456888864
Q ss_pred C-CEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEcC--CEEEEEe-C-CCcEEEEEcCCCeeeeEeccCCCcEE
Q 001042 976 T-GILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR--DTVITGS-D-DWTARMWSISRGTCDAVLACHAGPVQ 1050 (1178)
Q Consensus 976 ~-~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~--~~l~sgs-~-dg~I~iwd~~~~~~~~~~~~h~~~I~ 1050 (1178)
+ +++++-...+.|.++++........+.........+++++ ..|+.+. . .+.|..+++............-...+
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~Pn 543 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN 543 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCC
T ss_pred CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCcc
Confidence 4 4444445678899999876544333333334556777754 3444333 2 26788777653322222222234567
Q ss_pred EEEEecCCCEE-EEEeCCCcEEEEECCCCceEEEEEecccCCcEEEEecCC-CEEEEEeCCCcEEEEEcCCCc
Q 001042 1051 CVEYSSSDRGI-ITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSINAGD-HWLGIGAADNSMSLFHRPQER 1121 (1178)
Q Consensus 1051 ~l~~spdg~~L-~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg-~~Lasgs~Dg~I~iwd~~~~~ 1121 (1178)
.|++++++..| ++-+..+.|..++++......+............+..++ .++++....+.|..++..+++
T Consensus 544 Glavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 544 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGS 616 (699)
T ss_dssp CEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEE
T ss_pred EEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCC
Confidence 89999876554 455566789999987543333322111111112222233 444455556889999876543
No 321
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.36 E-value=0.11 Score=67.41 Aligned_cols=224 Identities=9% Similarity=0.126 Sum_probs=140.9
Q ss_pred CCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEE-cCCEEEE
Q 001042 943 DGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM-DRDTVIT 1021 (1178)
Q Consensus 943 dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~-~~~~l~s 1021 (1178)
+.+|.|.|+.++..+... .-..-+...+|..+.+|.-. ..++.++|+.+...++.+.-.. .|.--.| +++.++.
T Consensus 47 ~~~vvIidl~~~~~~~rr---pi~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e-~VvfWkWis~~~l~l 121 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRR---PISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVAL 121 (1630)
T ss_pred CceEEEEECCCCCCcccc---cccchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCC-CceEEEecCCCeeEE
Confidence 447888998876543221 11223455678887776654 7899999999988887765433 5666677 6776666
Q ss_pred EeCCCcEEEEEcCC-CeeeeEeccC----CCcEEEEEEecCCCEEEEEe-------CCCcEEEEECCCCceEEEEEeccc
Q 001042 1022 GSDDWTARMWSISR-GTCDAVLACH----AGPVQCVEYSSSDRGIITGS-------SDGLLRFWENDDGGIKCVKNVTIH 1089 (1178)
Q Consensus 1022 gs~dg~I~iwd~~~-~~~~~~~~~h----~~~I~~l~~spdg~~L~sgs-------~Dg~I~iwd~~~~~~~~~~~~~~h 1089 (1178)
.+ +..|+.|++.. ..+.+.+..| ...|..-..+++.++++..| -.|.+.+|+++.+ ..+.+.||
T Consensus 122 VT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~---~sQ~iegh 197 (1630)
T 1xi4_A 122 VT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK---VSQPIEGH 197 (1630)
T ss_pred Ec-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc---cchhhhHh
Confidence 64 45799999964 3444445444 45677778899999876443 3578889988764 44556777
Q ss_pred CCcEEEEe----cC-CCEEEEEeC---CCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEE
Q 001042 1090 SSAILSIN----AG-DHWLGIGAA---DNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRIC 1161 (1178)
Q Consensus 1090 ~~~i~~is----~d-g~~Lasgs~---Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~La 1161 (1178)
.+.-..+. +. ...++.+.. .+.++|-++....... .+...+ ..+....+....+--.++..|+.-..+.
T Consensus 198 a~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~-~~f~kk--~~~~~~~~~~~~Dfpv~~~vs~k~g~iy 274 (1630)
T 1xi4_A 198 AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN-QPFPKK--AVDVFFPPEAQNDFPVAMQISEKHDVVF 274 (1630)
T ss_pred HhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCC-CCCccc--cccccCCcccccCcceEEEeccccCEEE
Confidence 76665552 12 223333322 3688888885421100 000000 1112222223344455788888888899
Q ss_pred EEeCCCcEEEEECCCCC
Q 001042 1162 SGGRNGLLRLWEATINI 1178 (1178)
Q Consensus 1162 s~s~Dg~V~IWdv~tg~ 1178 (1178)
..+.-|.|.++|+.||.
T Consensus 275 ~itk~G~~~~~d~~t~~ 291 (1630)
T 1xi4_A 275 LITKYGYIHLYDLETGT 291 (1630)
T ss_pred EEecCceEEEEecccch
Confidence 99999999999999984
No 322
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.22 E-value=0.16 Score=57.36 Aligned_cols=237 Identities=10% Similarity=0.015 Sum_probs=115.1
Q ss_pred CCCEEEEEeCC-CcEEEEcCCC--CCceeeEeec-ccccceEEEecCCCEEEEEeC-C---------CcEEEEECCCCcE
Q 001042 850 DAGFFISGSTD-CLVKIWDPSL--RGSELRATLK-GHTRTVRAINSDRGKVVSGSD-D---------QSVLVWDKQTSQL 915 (1178)
Q Consensus 850 d~~~Lasgs~D-g~I~iWd~~~--~~~~~~~~l~-~h~~~V~~~s~d~~~l~sgs~-d---------g~I~iwd~~t~~~ 915 (1178)
++.+++.|+.+ ..+.++|... ........+. .......+...++..++.|+. + ..+.+||..+.+-
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W 98 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSW 98 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEE
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcE
Confidence 46666777653 4688888752 2222222222 111112223346667777765 2 4688999987654
Q ss_pred EEEecC--CCCceEEEEEeCCCeEEEEeCC---------------------------------------CeEEEEeCCCC
Q 001042 916 LEELKG--HDAQVSCVRMLSGERVLTASHD---------------------------------------GTVKMWDVRTD 954 (1178)
Q Consensus 916 ~~~l~~--h~~~V~~l~~~~~~~l~sgs~d---------------------------------------g~V~iwd~~~~ 954 (1178)
...-.. ....-.+++..++..++.|+.+ ..+.+||..+.
T Consensus 99 ~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~ 178 (357)
T 2uvk_A 99 VKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQ 178 (357)
T ss_dssp EECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTT
T ss_pred EECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCC
Confidence 332111 1111122233577777888754 57899999887
Q ss_pred eEEEEecCCC-CCE-EEEEEeCCCCEEEEEeC------CCeEEEEEC--CCCceEE--EEecCCc--cEEEEEEcCCEEE
Q 001042 955 TCVATVGRCS-SAV-LCMEYDDSTGILAAGGR------DAVANIWDI--RAGRQMH--KFLGHTK--WIRSIRMDRDTVI 1020 (1178)
Q Consensus 955 ~~~~~~~~~~-~~I-~~l~~sp~~~~l~sgs~------dg~I~lwD~--~~~~~~~--~~~~~~~--~v~~l~~~~~~l~ 1020 (1178)
+-...-.... ..- .+++.. ++++++.|+. ...+..||+ .+.+-.. .+..... ...++..++..++
T Consensus 179 ~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv 257 (357)
T 2uvk_A 179 QWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIF 257 (357)
T ss_dssp EEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEE
T ss_pred cEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEEEE
Confidence 6443321111 111 223322 5566666653 345777876 4333221 1111111 2224455666666
Q ss_pred EEeCC----------------------CcEEEEEcCCCeeee--EeccCCCcEEEEEEecCCCEEEEEeCCC------cE
Q 001042 1021 TGSDD----------------------WTARMWSISRGTCDA--VLACHAGPVQCVEYSSSDRGIITGSSDG------LL 1070 (1178)
Q Consensus 1021 sgs~d----------------------g~I~iwd~~~~~~~~--~~~~h~~~I~~l~~spdg~~L~sgs~Dg------~I 1070 (1178)
.|+.+ ..+.+||+.+.+... .+......-.+ ..-+++.++.|+.++ .|
T Consensus 258 ~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~--~~~~~~i~v~GG~~~~~~~~~~v 335 (357)
T 2uvk_A 258 AGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVS--LPWNNSLLIIGGETAGGKAVTDS 335 (357)
T ss_dssp ECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEE--EEETTEEEEEEEECGGGCEEEEE
T ss_pred EcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCccccee--EEeCCEEEEEeeeCCCCCEeeeE
Confidence 66632 257789987764332 22222222122 334677888888543 35
Q ss_pred EEEECCCCceEEEEEeccc
Q 001042 1071 RFWENDDGGIKCVKNVTIH 1089 (1178)
Q Consensus 1071 ~iwd~~~~~~~~~~~~~~h 1089 (1178)
.++++++++........+|
T Consensus 336 ~~l~~~~~~~~~~~~~~~~ 354 (357)
T 2uvk_A 336 VLITVKDNKVTVQNLEHHH 354 (357)
T ss_dssp EEEEC-CCSCEEEC-----
T ss_pred EEEEEcCcEeEeeeccccc
Confidence 5668888765554444433
No 323
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.17 E-value=1.4 Score=49.62 Aligned_cols=72 Identities=13% Similarity=0.080 Sum_probs=47.4
Q ss_pred CCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeE--EEEec---CCCCCEEEEEEeCC---CCEEEEEeC-C-----CeE
Q 001042 923 DAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTC--VATVG---RCSSAVLCMEYDDS---TGILAAGGR-D-----AVA 988 (1178)
Q Consensus 923 ~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~--~~~~~---~~~~~I~~l~~sp~---~~~l~sgs~-d-----g~I 988 (1178)
-...+.++|.++..++++..+|.|.+++ +++. +..+. ........++++|+ +..|.++.. . +.|
T Consensus 30 l~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp CSCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 3456789998555577777889999998 4442 22221 12456899999998 555555443 2 678
Q ss_pred EEEECCCC
Q 001042 989 NIWDIRAG 996 (1178)
Q Consensus 989 ~lwD~~~~ 996 (1178)
..|+...+
T Consensus 108 ~r~~~~~~ 115 (352)
T 2ism_A 108 VRLRHLGE 115 (352)
T ss_dssp EEEEECSS
T ss_pred EEEEeCCC
Confidence 88887654
No 324
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.12 E-value=0.16 Score=57.44 Aligned_cols=227 Identities=10% Similarity=0.046 Sum_probs=116.4
Q ss_pred CCCEEEEEeC-CCcEEEEECCC--CcEE--EEecCCCCceEEEEEeCCCeEEEEeC-C---------CeEEEEeCCCCeE
Q 001042 892 DRGKVVSGSD-DQSVLVWDKQT--SQLL--EELKGHDAQVSCVRMLSGERVLTASH-D---------GTVKMWDVRTDTC 956 (1178)
Q Consensus 892 d~~~l~sgs~-dg~I~iwd~~t--~~~~--~~l~~h~~~V~~l~~~~~~~l~sgs~-d---------g~V~iwd~~~~~~ 956 (1178)
++..++.|+. ...+.++|..+ .+-. ..+......-.+++..++..++.|+. + ..+.+||..+.+-
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W 98 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSW 98 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEE
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcE
Confidence 5555566653 34688888864 3221 11221111222333346677777765 2 4688999988764
Q ss_pred EEEecCC---CCCEEEEEEeCCCCEEEEEeCC---------------------------------------CeEEEEECC
Q 001042 957 VATVGRC---SSAVLCMEYDDSTGILAAGGRD---------------------------------------AVANIWDIR 994 (1178)
Q Consensus 957 ~~~~~~~---~~~I~~l~~sp~~~~l~sgs~d---------------------------------------g~I~lwD~~ 994 (1178)
...-... .....++. .++++++.|+.+ ..+.+||..
T Consensus 99 ~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~ 176 (357)
T 2uvk_A 99 VKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPS 176 (357)
T ss_dssp EECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETT
T ss_pred EECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCC
Confidence 3322111 11222222 567777888754 579999998
Q ss_pred CCceEEE--EecCCcc-EEEEEEcCCEEEEEeC------CCcEEEEEc--CCCeeee--EeccCCCcEEEEEEecCCCEE
Q 001042 995 AGRQMHK--FLGHTKW-IRSIRMDRDTVITGSD------DWTARMWSI--SRGTCDA--VLACHAGPVQCVEYSSSDRGI 1061 (1178)
Q Consensus 995 ~~~~~~~--~~~~~~~-v~~l~~~~~~l~sgs~------dg~I~iwd~--~~~~~~~--~~~~h~~~I~~l~~spdg~~L 1061 (1178)
+.+-... +...... ..++..++..++.|+. ...+..||+ .+.+... .+..........+...+++.+
T Consensus 177 ~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iy 256 (357)
T 2uvk_A 177 TQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLI 256 (357)
T ss_dssp TTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEEE
T ss_pred CCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEEE
Confidence 7654332 2111111 2333445555666553 345777876 4433221 111111111111223356777
Q ss_pred EEEeCC----------------------CcEEEEECCCCceEEEEEecccCCcEEEEecCCCEEEEEeCCC------cEE
Q 001042 1062 ITGSSD----------------------GLLRFWENDDGGIKCVKNVTIHSSAILSINAGDHWLGIGAADN------SMS 1113 (1178)
Q Consensus 1062 ~sgs~D----------------------g~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~Lasgs~Dg------~I~ 1113 (1178)
+.|+.+ ..+.+||..+.++..+..+........++..++++++.|+.++ .|.
T Consensus 257 v~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~v~ 336 (357)
T 2uvk_A 257 FAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSV 336 (357)
T ss_dssp EECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEETTEEEEEEEECGGGCEEEEEE
T ss_pred EEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEeCCEEEEEeeeCCCCCEeeeEE
Confidence 777632 2578999998877777665544333344557888888888653 345
Q ss_pred EEEcCCC
Q 001042 1114 LFHRPQE 1120 (1178)
Q Consensus 1114 iwd~~~~ 1120 (1178)
+++++++
T Consensus 337 ~l~~~~~ 343 (357)
T 2uvk_A 337 LITVKDN 343 (357)
T ss_dssp EEEC-CC
T ss_pred EEEEcCc
Confidence 5566543
No 325
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.03 E-value=1.1 Score=52.62 Aligned_cols=223 Identities=12% Similarity=0.066 Sum_probs=120.8
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCceeeEeecccc-----cceEEE-------ecCCCEEEEEeCCC-------cEEEEECC
Q 001042 851 AGFFISGSTDCLVKIWDPSLRGSELRATLKGHT-----RTVRAI-------NSDRGKVVSGSDDQ-------SVLVWDKQ 911 (1178)
Q Consensus 851 ~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h~-----~~V~~~-------s~d~~~l~sgs~dg-------~I~iwd~~ 911 (1178)
++++++....+.|++.|.. +..+........ ..-.++ +++++.++++...+ .|.+.+..
T Consensus 152 ~~Lyv~~~~~~~i~~ID~~--~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~ 229 (496)
T 3kya_A 152 DHLYICYDGHKAIQLIDLK--NRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRN 229 (496)
T ss_dssp EEEEEEEETEEEEEEEETT--TTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECC
T ss_pred CEEEEEECCCCeEEEEECC--CCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecC
Confidence 4444554445678888865 333333222211 122367 88999777776554 25566533
Q ss_pred C-CcEE-----EEecCCCCceEEEEEeC--CCeEEEEeCCCeEEEEeCC-------CCeE-----------EEE-ec-CC
Q 001042 912 T-SQLL-----EELKGHDAQVSCVRMLS--GERVLTASHDGTVKMWDVR-------TDTC-----------VAT-VG-RC 963 (1178)
Q Consensus 912 t-~~~~-----~~l~~h~~~V~~l~~~~--~~~l~sgs~dg~V~iwd~~-------~~~~-----------~~~-~~-~~ 963 (1178)
. ++.. ..+.. ......++.++ +.++++-..++.|..+|+. ++.. ... +. ..
T Consensus 230 ~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~ 308 (496)
T 3kya_A 230 ADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIAD 308 (496)
T ss_dssp TTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSS
T ss_pred CCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCC
Confidence 3 2221 12211 11234556663 4445566678889999987 5543 111 11 22
Q ss_pred CCCEEEEEEeCCCCEEEEE-eCCCeEEEEECC--CCce--EEEEecC---C------------ccEE-EEEEc-------
Q 001042 964 SSAVLCMEYDDSTGILAAG-GRDAVANIWDIR--AGRQ--MHKFLGH---T------------KWIR-SIRMD------- 1015 (1178)
Q Consensus 964 ~~~I~~l~~sp~~~~l~sg-s~dg~I~lwD~~--~~~~--~~~~~~~---~------------~~v~-~l~~~------- 1015 (1178)
......++++|+|+.++.+ +....|+.+|.. ++.. ...+.+. . .... .++.+
T Consensus 309 ~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~ 388 (496)
T 3kya_A 309 PSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGE 388 (496)
T ss_dssp SSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSS
T ss_pred CCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEcccccccc
Confidence 3446899999999965554 466788886643 3321 1222221 0 1233 34443
Q ss_pred --CCEEEEEeCCCcEEEEEcCCCeeeeEeccC------------------------CCcEEEEEEecC-CCEEEEEeCCC
Q 001042 1016 --RDTVITGSDDWTARMWSISRGTCDAVLACH------------------------AGPVQCVEYSSS-DRGIITGSSDG 1068 (1178)
Q Consensus 1016 --~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h------------------------~~~I~~l~~spd-g~~L~sgs~Dg 1068 (1178)
+++.++=..++.|+.++ .+|. +.++.+. -.....++++++ |.+.++=..+.
T Consensus 389 ~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~ 466 (496)
T 3kya_A 389 EEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGH 466 (496)
T ss_dssp CCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTT
T ss_pred CCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCC
Confidence 23444445677888888 4553 3444322 013567888886 66555555667
Q ss_pred cEEEEECCCC
Q 001042 1069 LLRFWENDDG 1078 (1178)
Q Consensus 1069 ~I~iwd~~~~ 1078 (1178)
.|+.++++..
T Consensus 467 rIrki~~~~~ 476 (496)
T 3kya_A 467 TIRTISMEQE 476 (496)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEECCCC
Confidence 7887777654
No 326
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.01 E-value=0.037 Score=61.91 Aligned_cols=185 Identities=14% Similarity=0.047 Sum_probs=104.4
Q ss_pred CCeEEEEeCCCeEEEEeCCCCeEEEEecCC-CCCEEEEEEe--CCCCEEEEE--eCCCeEEEEECCCCceEEEEec----
Q 001042 934 GERVLTASHDGTVKMWDVRTDTCVATVGRC-SSAVLCMEYD--DSTGILAAG--GRDAVANIWDIRAGRQMHKFLG---- 1004 (1178)
Q Consensus 934 ~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~-~~~I~~l~~s--p~~~~l~sg--s~dg~I~lwD~~~~~~~~~~~~---- 1004 (1178)
++.++.++.||.|.-+|..+|+...++... ..++....-. +.+..++.+ +.||.+..+|..+|.....+..
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 567899999999999999999999988654 1222221100 112234444 5899999999988865544332
Q ss_pred CCccEEE---EEE-------cCCEEEEEeCCCcEEEEEcCCCeeeeEeccCC--Cc-----EEEEEEe-----cCCCEEE
Q 001042 1005 HTKWIRS---IRM-------DRDTVITGSDDWTARMWSISRGTCDAVLACHA--GP-----VQCVEYS-----SSDRGII 1062 (1178)
Q Consensus 1005 ~~~~v~~---l~~-------~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~--~~-----I~~l~~s-----pdg~~L~ 1062 (1178)
...++.. ... .++.+++|+.+|.+...|..+|+.+..+.... +. ..|.... ..+..++
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ 169 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV 169 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence 1112221 011 45688999999999999999999998886321 10 1111110 1235677
Q ss_pred EEeCCCcEEEEECCCCceEEE---EEecccCCc--E---EEEecCCCEEEEEeCCCcEEEEEcCCCc
Q 001042 1063 TGSSDGLLRFWENDDGGIKCV---KNVTIHSSA--I---LSINAGDHWLGIGAADNSMSLFHRPQER 1121 (1178)
Q Consensus 1063 sgs~Dg~I~iwd~~~~~~~~~---~~~~~h~~~--i---~~is~dg~~Lasgs~Dg~I~iwd~~~~~ 1121 (1178)
.|..+..+.+.+ ++|+ ... ......... + ...+.|+.+ +.++.||.|.-+|..++.
T Consensus 170 ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~ 233 (339)
T 2be1_A 170 IGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRI 233 (339)
T ss_dssp EEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCC
T ss_pred EecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCc
Confidence 777676666665 3342 111 111111100 0 000123555 446777888777776443
No 327
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.86 E-value=0.37 Score=62.66 Aligned_cols=213 Identities=11% Similarity=0.185 Sum_probs=129.3
Q ss_pred CCcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEeCCCeEEE
Q 001042 860 DCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLT 939 (1178)
Q Consensus 860 Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~~~~~l~s 939 (1178)
..+|.|-|+........+... -...| ++|..+.+|.-. ..++.|+|+++.+.++...- ...|.-=.|-+.+.++.
T Consensus 47 ~~~vvIidl~~~~~~~rrpi~-AdsAI--MnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~~l~l 121 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPIS-ADSAI--MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNTVAL 121 (1630)
T ss_pred CceEEEEECCCCCCccccccc-chhhc--cCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCCeeEE
Confidence 347888887633222111111 11111 478777766654 68999999998887776654 34555556667777666
Q ss_pred EeCCCeEEEEeCCCC-eEEEEecCC----CCCEEEEEEeCCCCEEEEEe-------CCCeEEEEECCCCceEEEEecCCc
Q 001042 940 ASHDGTVKMWDVRTD-TCVATVGRC----SSAVLCMEYDDSTGILAAGG-------RDAVANIWDIRAGRQMHKFLGHTK 1007 (1178)
Q Consensus 940 gs~dg~V~iwd~~~~-~~~~~~~~~----~~~I~~l~~sp~~~~l~sgs-------~dg~I~lwD~~~~~~~~~~~~~~~ 1007 (1178)
.+ +..|.-|++... .+++.+..| ...|..-..+++.++++..| -.|.+.+|....+ ..+.+.||.+
T Consensus 122 VT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~ 199 (1630)
T 1xi4_A 122 VT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAA 199 (1630)
T ss_pred Ec-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHh
Confidence 55 457999999643 343344333 46677888889999887654 3478888887643 2334456655
Q ss_pred cEEEEEEcCC----EEEE-Ee---CCCcEEEEEcCCC---eeee------Ee-c--cCCCcEEEEEEecCCCEEEEEeCC
Q 001042 1008 WIRSIRMDRD----TVIT-GS---DDWTARMWSISRG---TCDA------VL-A--CHAGPVQCVEYSSSDRGIITGSSD 1067 (1178)
Q Consensus 1008 ~v~~l~~~~~----~l~s-gs---~dg~I~iwd~~~~---~~~~------~~-~--~h~~~I~~l~~spdg~~L~sgs~D 1067 (1178)
.-..+..+++ .+++ +. ..+.++|.++... .... .+ . ...+-..++..++....+..-+.-
T Consensus 200 ~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~ 279 (1630)
T 1xi4_A 200 SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKY 279 (1630)
T ss_pred hhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecC
Confidence 5444444322 2222 21 1368888888543 1111 01 0 012234567778777788888899
Q ss_pred CcEEEEECCCCc
Q 001042 1068 GLLRFWENDDGG 1079 (1178)
Q Consensus 1068 g~I~iwd~~~~~ 1079 (1178)
|.|.++|+.+|.
T Consensus 280 G~~~~~d~~t~~ 291 (1630)
T 1xi4_A 280 GYIHLYDLETGT 291 (1630)
T ss_pred ceEEEEecccch
Confidence 999999999993
No 328
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.56 E-value=0.2 Score=55.98 Aligned_cols=185 Identities=11% Similarity=0.081 Sum_probs=105.9
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCceeeEeeccc-ccceEEEe----cCCCEEEEE--eCCCcEEEEECCCCcEEEEecC--
Q 001042 851 AGFFISGSTDCLVKIWDPSLRGSELRATLKGH-TRTVRAIN----SDRGKVVSG--SDDQSVLVWDKQTSQLLEELKG-- 921 (1178)
Q Consensus 851 ~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~~h-~~~V~~~s----~d~~~l~sg--s~dg~I~iwd~~t~~~~~~l~~-- 921 (1178)
+.+++.++.||.|.-.|.. +++....+... ..+..... +.+..++.+ +.||.+..++..+|.....+..
T Consensus 10 ~~~V~v~t~dG~l~Ald~~--tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~ 87 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRR--NGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQ 87 (339)
T ss_dssp EEEEEEEETTSCEEEEETT--TTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHH
T ss_pred CCEEEEEeCCCeEEEEECC--CCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccc
Confidence 4578889999999999965 44444444433 12232221 123344444 5899999999998865544431
Q ss_pred --CCCceEE-----E----EEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCCCC--C-----EEEEEEe-----CCCCE
Q 001042 922 --HDAQVSC-----V----RMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSS--A-----VLCMEYD-----DSTGI 978 (1178)
Q Consensus 922 --h~~~V~~-----l----~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~~--~-----I~~l~~s-----p~~~~ 978 (1178)
...++.. + ..+.++.+++|+.+|.+...|..+|+.+..+..... . ..|.... ..+..
T Consensus 88 lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~ 167 (339)
T 2be1_A 88 LVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENM 167 (339)
T ss_dssp HHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCE
T ss_pred ceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCe
Confidence 1222221 0 002567889999999999999999999998854321 0 1111111 12456
Q ss_pred EEEEeCCCeEEEEECCCCceEEEE-----ecCCcc--EE---EEEEcCCEEEEEeCCCcEEEEEcCCCeeee
Q 001042 979 LAAGGRDAVANIWDIRAGRQMHKF-----LGHTKW--IR---SIRMDRDTVITGSDDWTARMWSISRGTCDA 1040 (1178)
Q Consensus 979 l~sgs~dg~I~lwD~~~~~~~~~~-----~~~~~~--v~---~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~ 1040 (1178)
++.|..+..+.+.+ ++|+ ...+ ...... +. .+..++.. +.++.||.|.-+|..+|+.+.
T Consensus 168 v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 168 IVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred EEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 77777777777766 4453 2111 110000 00 00011334 568899999999998888765
No 329
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=95.35 E-value=0.32 Score=53.13 Aligned_cols=221 Identities=15% Similarity=0.077 Sum_probs=122.6
Q ss_pred ceEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCeEEEEecCCC
Q 001042 885 TVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCS 964 (1178)
Q Consensus 885 ~V~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~~ 964 (1178)
.|..++......+.-. ||.+..|-....-.+..-......|..++......++. . ||.|..|-....-.+..-....
T Consensus 25 ~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l-~-~G~v~~wG~n~~Gqlg~P~~~~ 101 (282)
T 3qhy_B 25 GVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLAL-K-DGEVIAWGGNEDGQTTVPAEAR 101 (282)
T ss_dssp SCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEE-E-TTEEEEEECCTTSTTCCCGGGS
T ss_pred CCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEE-E-CCEEEEeeCCCCCCCCCCcccC
Confidence 5667766555555556 89999997654221111111223577777655555555 5 9999999765422111111123
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEcCCEEEEEeCCCcEEEEEcCCCeeeeEecc
Q 001042 965 SAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLAC 1044 (1178)
Q Consensus 965 ~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 1044 (1178)
..|..++...+. .++-. +|.|+.|-....-.+..-......|..++......+.-. ||.|+.|-......+..-..
T Consensus 102 ~~v~~ia~G~~h--s~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~p~~ 177 (282)
T 3qhy_B 102 SGVDAIAAGAWA--SYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTVPAE 177 (282)
T ss_dssp SSEEEEEEETTE--EEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSCCGG
T ss_pred CCeEEEECcCCE--EEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCCcee
Confidence 467777766543 33344 899999976543222111123346778877666555455 89999997654222211111
Q ss_pred CCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecccCCcEEEEecCCCEEEEEeCCCcEEEEEcC
Q 001042 1045 HAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRP 1118 (1178)
Q Consensus 1045 h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~Lasgs~Dg~I~iwd~~ 1118 (1178)
-...|..++...+. .++. .||.|..|-.......-+ -......|..++......++-. ||.+..|-..
T Consensus 178 ~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gqlg~--p~~~~~~v~~i~~G~~h~~al~-~g~v~~wG~n 245 (282)
T 3qhy_B 178 AQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQTTV--PTEALSGVSAIASGEWYSLALK-NGKVIAWGSS 245 (282)
T ss_dssp GGSSEEEEEECSSE-EEEE--ETTEEEEEECCTTSTTCC--CGGGGSSCCEEEECSSCEEEEE-TTEEEEESTT
T ss_pred cCCCeEEEEecCCE-EEEE--ECCeEEEEECCCCCCCCC--CcccCCCceEEEcCCCEEEEEE-CCEEEEecCC
Confidence 23457777654332 2333 599999997654311100 0011234667765555444445 9999999765
No 330
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=94.98 E-value=2.9 Score=47.00 Aligned_cols=217 Identities=10% Similarity=0.056 Sum_probs=108.5
Q ss_pred ceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeec---ccccceE--EEecC---CCEEEEEe
Q 001042 829 AITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLK---GHTRTVR--AINSD---RGKVVSGS 900 (1178)
Q Consensus 829 ~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~---~h~~~V~--~~s~d---~~~l~sgs 900 (1178)
.-..++|. +||+++++ ..+|.|++++ + ........+. ....... +++++ +..|.++.
T Consensus 32 ~P~~ia~~------------pdG~l~V~-e~~g~I~~i~-~-g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~ 96 (352)
T 2ism_A 32 VPWALAFL------------PDGGMLIA-ERPGRIRLFR-E-GRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYR 96 (352)
T ss_dssp CEEEEEEC------------TTSCEEEE-ETTTEEEEEE-T-TEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEE
T ss_pred CceEEEEc------------CCCeEEEE-eCCCeEEEEE-C-CCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEE
Confidence 34577776 88986655 5569999998 3 2222222221 1112223 56777 55555543
Q ss_pred C-C-----CcEEEEECCCCc-----E-EEEec---CCCCceEEEEEeCCCeEEEEeC--------------CCeEEEEeC
Q 001042 901 D-D-----QSVLVWDKQTSQ-----L-LEELK---GHDAQVSCVRMLSGERVLTASH--------------DGTVKMWDV 951 (1178)
Q Consensus 901 ~-d-----g~I~iwd~~t~~-----~-~~~l~---~h~~~V~~l~~~~~~~l~sgs~--------------dg~V~iwd~ 951 (1178)
. . +.|..|+...++ . +..+. +.......++|.++..|+.+.. .|.|.-+|.
T Consensus 97 ~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~ 176 (352)
T 2ism_A 97 TVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTP 176 (352)
T ss_dssp EECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECT
T ss_pred ecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcC
Confidence 3 2 678888876542 1 12233 1112335788884334444422 255666665
Q ss_pred CCC--------------eEEEEecCCCCCEEEEEEeC-CCCEEEEEeCCCe--------EEEEECCCCc-----------
Q 001042 952 RTD--------------TCVATVGRCSSAVLCMEYDD-STGILAAGGRDAV--------ANIWDIRAGR----------- 997 (1178)
Q Consensus 952 ~~~--------------~~~~~~~~~~~~I~~l~~sp-~~~~l~sgs~dg~--------I~lwD~~~~~----------- 997 (1178)
... ..+... ++ .....++|+| ++.++++-...+. |.+. ..+.
T Consensus 177 dG~~p~~npf~~~~~~~~~i~a~-G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i--~~G~nyGwp~~~g~~ 252 (352)
T 2ism_A 177 EGEPAPGNPFLGRRGARPEVYSL-GH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLI--VPGGNYGWPRVVGRG 252 (352)
T ss_dssp TSSBCTTCTTTTCTTSCTTEEEE-CC-SEECCCEECTTTCCEEEEEECC------CCCEEEEE--CTTCBCCTTTCCSCC
T ss_pred CCCCCCCCcccCCCCCCccEEEE-cC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEe--ccCCcCCCCcccCCC
Confidence 420 011111 11 2356789999 5554444332222 3332 2221
Q ss_pred -------eEEEEecCCccEEEEEE-cCCEEEEEeCCCcEEEEEcCCCee------eeEeccCCCcEEEEEEecCCCEEEE
Q 001042 998 -------QMHKFLGHTKWIRSIRM-DRDTVITGSDDWTARMWSISRGTC------DAVLACHAGPVQCVEYSSSDRGIIT 1063 (1178)
Q Consensus 998 -------~~~~~~~~~~~v~~l~~-~~~~l~sgs~dg~I~iwd~~~~~~------~~~~~~h~~~I~~l~~spdg~~L~s 1063 (1178)
++..+ .+......+++ +++.+++....+.|...++..... ...+......+..+++.|||.+.++
T Consensus 253 ~~~~~~~p~~~~-~~~~ap~G~~~~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~ 331 (352)
T 2ism_A 253 NDPRYRDPLYFW-PQGFPPGNLAFFRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVT 331 (352)
T ss_dssp CCTTSCCCSEEC-TTCCCEEEEEEETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEE
T ss_pred CCCCCcCCeEec-CCCCCCcceEEECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEE
Confidence 12222 22224456666 444555555566777777654321 1222222357889999999977666
Q ss_pred Ee
Q 001042 1064 GS 1065 (1178)
Q Consensus 1064 gs 1065 (1178)
..
T Consensus 332 ~~ 333 (352)
T 2ism_A 332 TS 333 (352)
T ss_dssp EC
T ss_pred Ee
Confidence 54
No 331
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.38 E-value=0.96 Score=56.21 Aligned_cols=177 Identities=13% Similarity=0.120 Sum_probs=97.3
Q ss_pred CeEEEEeCCCCeEEEEe-c-----CCC-CCEEEEEEeC-CCCEEEEEeCC------CeEEEEECCCCceEEE--EecCCc
Q 001042 944 GTVKMWDVRTDTCVATV-G-----RCS-SAVLCMEYDD-STGILAAGGRD------AVANIWDIRAGRQMHK--FLGHTK 1007 (1178)
Q Consensus 944 g~V~iwd~~~~~~~~~~-~-----~~~-~~I~~l~~sp-~~~~l~sgs~d------g~I~lwD~~~~~~~~~--~~~~~~ 1007 (1178)
..+.+||..+++....- . ... ..-.+++... ++..++.||.+ ..+.+||..+.+-... +.....
T Consensus 412 ~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~ 491 (695)
T 2zwa_A 412 NEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRF 491 (695)
T ss_dssp CCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCB
T ss_pred CcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcc
Confidence 34677887776543332 1 011 1112333333 67777777743 3588999887643322 222222
Q ss_pred cEEEEEE-cCCEEEEEeCCC--cEEEEEcCCCeeeeEe-----ccCCCcEEEEEEecC-CCEEEEEeC--C-----CcEE
Q 001042 1008 WIRSIRM-DRDTVITGSDDW--TARMWSISRGTCDAVL-----ACHAGPVQCVEYSSS-DRGIITGSS--D-----GLLR 1071 (1178)
Q Consensus 1008 ~v~~l~~-~~~~l~sgs~dg--~I~iwd~~~~~~~~~~-----~~h~~~I~~l~~spd-g~~L~sgs~--D-----g~I~ 1071 (1178)
.-.++.+ ++..++.|+.++ .+.+||..+++....- ........++.+..+ ++.++.||. + +.+.
T Consensus 492 ~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~ 571 (695)
T 2zwa_A 492 RHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAI 571 (695)
T ss_dssp SCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEE
T ss_pred cceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEE
Confidence 3334444 666777777554 6999999887543221 111222234555655 667777765 2 3588
Q ss_pred EEECCCCc------eEEEEEec--ccCCcEEEEecCCCEEEEEeC--------CCcEEEEEcCCC
Q 001042 1072 FWENDDGG------IKCVKNVT--IHSSAILSINAGDHWLGIGAA--------DNSMSLFHRPQE 1120 (1178)
Q Consensus 1072 iwd~~~~~------~~~~~~~~--~h~~~i~~is~dg~~Lasgs~--------Dg~I~iwd~~~~ 1120 (1178)
.||..+.. +..+.... ........+..++.+++.|+. ...+.+||..+.
T Consensus 572 ~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~ 636 (695)
T 2zwa_A 572 IFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSE 636 (695)
T ss_dssp EEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTT
T ss_pred EEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCC
Confidence 99998886 44444321 111122222333788888874 345889998754
No 332
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=94.38 E-value=8.3 Score=43.22 Aligned_cols=73 Identities=11% Similarity=0.059 Sum_probs=48.1
Q ss_pred CCceEEEEEeCCCeEEEEeCCCeEEEEeCCCCe-EEEEec---CCCCCEEEEEEeCC---CCEEEEEeC----C----Ce
Q 001042 923 DAQVSCVRMLSGERVLTASHDGTVKMWDVRTDT-CVATVG---RCSSAVLCMEYDDS---TGILAAGGR----D----AV 987 (1178)
Q Consensus 923 ~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~~-~~~~~~---~~~~~I~~l~~sp~---~~~l~sgs~----d----g~ 987 (1178)
-...+.++|.++..++++..+|.|.++| .+++ .+..+. ........++++|+ +..|.++.. + +.
T Consensus 28 l~~P~~ia~~pdG~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp CSCEEEEEEEETTEEEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCCeEEEEcCCCeEEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 4456788998555677778889999997 4554 222221 12356899999997 555555443 2 57
Q ss_pred EEEEECCCC
Q 001042 988 ANIWDIRAG 996 (1178)
Q Consensus 988 I~lwD~~~~ 996 (1178)
|..|+....
T Consensus 107 v~r~~~~~~ 115 (354)
T 3a9g_A 107 VIRGRLDGS 115 (354)
T ss_dssp EEEEEECSS
T ss_pred EEEEEECCC
Confidence 888887654
No 333
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=94.31 E-value=1.9 Score=46.86 Aligned_cols=206 Identities=14% Similarity=0.094 Sum_probs=110.9
Q ss_pred CCcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCceEEEEEeCCCeEEE
Q 001042 860 DCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLT 939 (1178)
Q Consensus 860 Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~l~~~~~~~l~s 939 (1178)
||.|..|-.+..+..-. -......|..++......+.-. ||.|..|-....-.+..-..-...|..++......++.
T Consensus 41 ~G~v~~wG~n~~Gqlg~--p~~~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~hs~al 117 (282)
T 3qhy_B 41 GGKVLGWGANLNGQLTM--PAATQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWASYAL 117 (282)
T ss_dssp TTEEEEEECCSSSTTSC--CGGGGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETTEEEEE
T ss_pred CCEEEEEeCCCCCCCCC--CccCCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCCEEEEE
Confidence 89999997653222111 1112335666765555544445 89999997654211111011124677777655544444
Q ss_pred EeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCccEEEEEEcCCEE
Q 001042 940 ASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTV 1019 (1178)
Q Consensus 940 gs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~~l 1019 (1178)
. ||.|..|-......+.........|..++...+.. +.-. ||.++.|-......+..-......|..++......
T Consensus 118 -~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~--~~l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs 192 (282)
T 3qhy_B 118 -K-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTA--LAVK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHS 192 (282)
T ss_dssp -E-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEE--EEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEE
T ss_pred -e-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEE--EEEE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEE
Confidence 4 99999997654221111112234577776644332 2233 79999997654322211111234688888766654
Q ss_pred EEEeCCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 001042 1020 ITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDD 1077 (1178)
Q Consensus 1020 ~sgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~ 1077 (1178)
+.- .||.|+.|-....-.+..-......|..++...... ++. . ||.|..|-...
T Consensus 193 ~al-~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~-~al-~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 193 LAL-KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYS-LAL-K-NGKVIAWGSSR 246 (282)
T ss_dssp EEE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCE-EEE-E-TTEEEEESTTC
T ss_pred EEE-ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEE-EEE-E-CCEEEEecCCC
Confidence 444 699999997654322211111123566666543332 333 3 99999996554
No 334
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.22 E-value=0.89 Score=56.50 Aligned_cols=189 Identities=12% Similarity=0.099 Sum_probs=105.1
Q ss_pred CCCEEEEEeCC----CcEEEEcCCCCCceeeE-e-----ecccccceEEEec--CCCEEEEEeCC------CcEEEEECC
Q 001042 850 DAGFFISGSTD----CLVKIWDPSLRGSELRA-T-----LKGHTRTVRAINS--DRGKVVSGSDD------QSVLVWDKQ 911 (1178)
Q Consensus 850 d~~~Lasgs~D----g~I~iWd~~~~~~~~~~-~-----l~~h~~~V~~~s~--d~~~l~sgs~d------g~I~iwd~~ 911 (1178)
++.+++.||.+ ..+.+||.......... . .........+..- ++..++.||.+ ..+.+||..
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~ 476 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMK 476 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETT
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCC
Confidence 46677777753 46788887644433332 1 1111111112223 77777777754 357889988
Q ss_pred CCcEEEE--ecCCCCceEEEEE-eCCCeEEEEeCCC--eEEEEeCCCCeEEEEec-----CCCCCEEEEEEeCC-CCEEE
Q 001042 912 TSQLLEE--LKGHDAQVSCVRM-LSGERVLTASHDG--TVKMWDVRTDTCVATVG-----RCSSAVLCMEYDDS-TGILA 980 (1178)
Q Consensus 912 t~~~~~~--l~~h~~~V~~l~~-~~~~~l~sgs~dg--~V~iwd~~~~~~~~~~~-----~~~~~I~~l~~sp~-~~~l~ 980 (1178)
+.+-... +...... .+++. .++..++.|+.++ .+.+||..++.-...-. .......++.+..+ +..++
T Consensus 477 t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 477 TREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII 555 (695)
T ss_dssp TTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred CCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence 7644322 1111111 23333 3777788887654 68999998876433221 11222234555655 66777
Q ss_pred EEeC--C-----CeEEEEECCCCce-----EEEEec----CCccEEEEEEc-CCEEEEEeC--------CCcEEEEEcCC
Q 001042 981 AGGR--D-----AVANIWDIRAGRQ-----MHKFLG----HTKWIRSIRMD-RDTVITGSD--------DWTARMWSISR 1035 (1178)
Q Consensus 981 sgs~--d-----g~I~lwD~~~~~~-----~~~~~~----~~~~v~~l~~~-~~~l~sgs~--------dg~I~iwd~~~ 1035 (1178)
.|+. + +.+..||+.+.+. -..+.. ......++.++ +..++.|+. ...+.+||..+
T Consensus 556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t 635 (695)
T 2zwa_A 556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLS 635 (695)
T ss_dssp ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTT
T ss_pred ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCC
Confidence 7765 2 4689999988761 122211 12233445556 666777764 34589999988
Q ss_pred Ceee
Q 001042 1036 GTCD 1039 (1178)
Q Consensus 1036 ~~~~ 1039 (1178)
++..
T Consensus 636 ~~W~ 639 (695)
T 2zwa_A 636 ETLT 639 (695)
T ss_dssp TEEE
T ss_pred CeEE
Confidence 7654
No 335
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=93.36 E-value=12 Score=41.92 Aligned_cols=188 Identities=9% Similarity=0.063 Sum_probs=102.5
Q ss_pred CCEEEEEEeCCCCEEEEE------------eCCCeEEEEECCCCc-eEEE--Eec-----CCccEEEEEE----cCC-EE
Q 001042 965 SAVLCMEYDDSTGILAAG------------GRDAVANIWDIRAGR-QMHK--FLG-----HTKWIRSIRM----DRD-TV 1019 (1178)
Q Consensus 965 ~~I~~l~~sp~~~~l~sg------------s~dg~I~lwD~~~~~-~~~~--~~~-----~~~~v~~l~~----~~~-~l 1019 (1178)
.....++..++|..++++ ..+|.|.++|..+.. .... +.+ ..-....+.+ ++. +|
T Consensus 50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 344566777776554443 268999999987421 1222 222 1235566665 233 34
Q ss_pred EEE-eC--CCcEEEEEcCCCe----eeeEeccC-CCcEEEEEEecCCCEEEEEe---CC------------CcEEEEECC
Q 001042 1020 ITG-SD--DWTARMWSISRGT----CDAVLACH-AGPVQCVEYSSSDRGIITGS---SD------------GLLRFWEND 1076 (1178)
Q Consensus 1020 ~sg-s~--dg~I~iwd~~~~~----~~~~~~~h-~~~I~~l~~spdg~~L~sgs---~D------------g~I~iwd~~ 1076 (1178)
+++ .. +.+|.+|++..+. .+..+.+. -...+.+++.++|.+.++.. .| ..=.+|.++
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 444 33 4678888776532 22233322 23578999999998777754 11 122344333
Q ss_pred CCceEEEEEecccCCcEEEEecCCCEEEEEe-CCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcC
Q 001042 1077 DGGIKCVKNVTIHSSAILSINAGDHWLGIGA-ADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDL 1155 (1178)
Q Consensus 1077 ~~~~~~~~~~~~h~~~i~~is~dg~~Lasgs-~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafsp 1155 (1178)
.++...+.. ......-.+++||++.+..+. ..+.|..|++.. +| .+..-+.. .. .+..-.+++.+
T Consensus 210 ~~~~~~~~~-~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~--------~g-~l~~~~~~-~~---~g~PDGi~vD~ 275 (355)
T 3sre_A 210 PNDVRVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHA--------NW-TLTPLRVL-SF---DTLVDNISVDP 275 (355)
T ss_dssp TTCCEEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT--------TS-CEEEEEEE-EC---SSEEEEEEECT
T ss_pred CCeEEEeec-CCcccCcceECCCCCEEEEEeCCCCeEEEEEECC--------CC-cEecCEEE-eC---CCCCceEEEeC
Confidence 343232211 112233357799998776654 578899999862 12 11111122 11 34567788998
Q ss_pred -CCCEEEEEeCC
Q 001042 1156 -ERKRICSGGRN 1166 (1178)
Q Consensus 1156 -dg~~Las~s~D 1166 (1178)
+|++.+++..+
T Consensus 276 e~G~lwva~~~~ 287 (355)
T 3sre_A 276 VTGDLWVGCHPN 287 (355)
T ss_dssp TTCCEEEEEESC
T ss_pred CCCcEEEEecCC
Confidence 59887766533
No 336
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=93.03 E-value=17 Score=42.30 Aligned_cols=61 Identities=5% Similarity=0.047 Sum_probs=38.6
Q ss_pred CCceEEEEEeCCCeEEEEeCCC-eEEEEeCCCCeEE--EEecC------CCCCEEEEEEeCC---CCEEEEEe
Q 001042 923 DAQVSCVRMLSGERVLTASHDG-TVKMWDVRTDTCV--ATVGR------CSSAVLCMEYDDS---TGILAAGG 983 (1178)
Q Consensus 923 ~~~V~~l~~~~~~~l~sgs~dg-~V~iwd~~~~~~~--~~~~~------~~~~I~~l~~sp~---~~~l~sgs 983 (1178)
-...+.++|.++..++++...| .|++++..+++.. ..+.. .......|+++|+ +..|.+..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~ 98 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG 98 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence 3456789998555566666665 7988887655432 22221 2456789999995 55555544
No 337
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=92.59 E-value=16 Score=40.90 Aligned_cols=164 Identities=7% Similarity=0.027 Sum_probs=88.3
Q ss_pred CCCeEEEEeCCC--CeEE-EEecC-----CCCCEEEEEEeC--CCC-EEEEE-eC--CCeEEEEECCCCc-e---EEEEe
Q 001042 942 HDGTVKMWDVRT--DTCV-ATVGR-----CSSAVLCMEYDD--STG-ILAAG-GR--DAVANIWDIRAGR-Q---MHKFL 1003 (1178)
Q Consensus 942 ~dg~V~iwd~~~--~~~~-~~~~~-----~~~~I~~l~~sp--~~~-~l~sg-s~--dg~I~lwD~~~~~-~---~~~~~ 1003 (1178)
.+|.|.++|..+ ++.. -.+.+ ..-....+.+.+ ++. +|+++ .. +..|.+|++.... . +..+.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 689999999873 2321 11222 123567777765 453 34444 33 4677787765432 2 22333
Q ss_pred cC-CccEEEEEEcC--CEEEEEe-----------------CCCcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEE
Q 001042 1004 GH-TKWIRSIRMDR--DTVITGS-----------------DDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIIT 1063 (1178)
Q Consensus 1004 ~~-~~~v~~l~~~~--~~l~sgs-----------------~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~s 1063 (1178)
+. -...+.+.+++ ...++.. ..|.|.-+|. ++. ..+...-..-+.++|+||++.+..
T Consensus 161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~-~~~~~~l~~pNGia~spDg~~lYv 237 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDV-RVVAEGFDFANGINISPDGKYVYI 237 (355)
T ss_dssp CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCC-EEEEEEESSEEEEEECTTSSEEEE
T ss_pred cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeE-EEeecCCcccCcceECCCCCEEEE
Confidence 22 23567777743 3444432 1234544543 432 223223345789999999988766
Q ss_pred Ee-CCCcEEEEECCC-CceEEEEEecccCCcE--EEEec-CCCEEEEEeCC
Q 001042 1064 GS-SDGLLRFWENDD-GGIKCVKNVTIHSSAI--LSINA-GDHWLGIGAAD 1109 (1178)
Q Consensus 1064 gs-~Dg~I~iwd~~~-~~~~~~~~~~~h~~~i--~~is~-dg~~Lasgs~D 1109 (1178)
+. ..+.|..|+++. +.......+.. .... .++.. +|++.+++..+
T Consensus 238 adt~~~~I~~~~~~~~g~l~~~~~~~~-~g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 238 AELLAHKIHVYEKHANWTLTPLRVLSF-DTLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp EEGGGTEEEEEEECTTSCEEEEEEEEC-SSEEEEEEECTTTCCEEEEEESC
T ss_pred EeCCCCeEEEEEECCCCcEecCEEEeC-CCCCceEEEeCCCCcEEEEecCC
Confidence 65 578899999863 43333333321 2222 34566 47776655433
No 338
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=92.44 E-value=6.8 Score=44.59 Aligned_cols=137 Identities=15% Similarity=0.178 Sum_probs=91.6
Q ss_pred CCCeEEEEeCCCeEEEEeCCCCeEEEEecCC----CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-----------
Q 001042 933 SGERVLTASHDGTVKMWDVRTDTCVATVGRC----SSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGR----------- 997 (1178)
Q Consensus 933 ~~~~l~sgs~dg~V~iwd~~~~~~~~~~~~~----~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~----------- 997 (1178)
++..++.+- ++.||.-++..+..-+.+... -..+..+..+|+|++||..+. ..|.+..+..+.
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHT
T ss_pred CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccc
Confidence 455555543 467777777644333333332 236788999999999998864 578888876321
Q ss_pred -eEEEEec------CCccEEEEEEcC-----CEEEEEeCCCcEEEEEcCCCe--eeeEec---------cCCCcEEEEEE
Q 001042 998 -QMHKFLG------HTKWIRSIRMDR-----DTVITGSDDWTARMWSISRGT--CDAVLA---------CHAGPVQCVEY 1054 (1178)
Q Consensus 998 -~~~~~~~------~~~~v~~l~~~~-----~~l~sgs~dg~I~iwd~~~~~--~~~~~~---------~h~~~I~~l~~ 1054 (1178)
..+.+.- ...+|..+.|+| ..|++-..|+.|++||+.... +. .+. .....|.+++|
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~F 187 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEF 187 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEE
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEE
Confidence 1223322 246799999964 489999999999999998632 22 232 12256889999
Q ss_pred ecCCCEEEEEe--CCCcEEE
Q 001042 1055 SSSDRGIITGS--SDGLLRF 1072 (1178)
Q Consensus 1055 spdg~~L~sgs--~Dg~I~i 1072 (1178)
.+++-.|...+ .+|.|+-
T Consensus 188 g~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 188 SKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp CTTSSCEEEEECTTSCEEEE
T ss_pred cCCCcEEEEEecCCCCCEEE
Confidence 99887777755 7787754
No 339
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=92.21 E-value=15 Score=39.94 Aligned_cols=232 Identities=13% Similarity=0.094 Sum_probs=125.9
Q ss_pred CCCCEEEEEe--CCCcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEEeCC--------------CcEEEEECCC
Q 001042 849 EDAGFFISGS--TDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDD--------------QSVLVWDKQT 912 (1178)
Q Consensus 849 ~d~~~Lasgs--~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sgs~d--------------g~I~iwd~~t 912 (1178)
.++.++.... .++.|...+.+ +... ..+.. ..+..+++++++|+-+... ..|+..+++.
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~d--g~~~-~~l~~--~~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg 97 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNID--GSNI-HKLSN--DTAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG 97 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETT--SCSC-EEEEE--EEEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTS
T ss_pred EeCCEEEEEeCCCCceEEEEcCC--CCCC-EEccC--CceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCC
Confidence 4566666554 24555555544 3333 22222 2245678999998877543 4677778776
Q ss_pred CcEEEEecCCCCceEEEEEe-CCCeEEEEe----CCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeC-CC
Q 001042 913 SQLLEELKGHDAQVSCVRML-SGERVLTAS----HDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGR-DA 986 (1178)
Q Consensus 913 ~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs----~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~-dg 986 (1178)
++... +... ... .++ .++.++-.. .+..|...++..... ..+..+.. .+++++++.|+-.+. ..
T Consensus 98 ~~~~~-l~~~--~~~--~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~-~~lt~~~~----~~~~~~g~~iy~t~~g~~ 167 (302)
T 3s25_A 98 HGSTV-LDPD--PCI--YASLIGNYIYYLHYDTQTATSLYRIRIDGEEK-KKIKNHYL----FTCNTSDRYFYYNNPKNG 167 (302)
T ss_dssp CCCEE-EECS--CEE--EEEEETTEEEEEEESSSSCEEEEEEETTSCCC-EEEESSCC----CCSEEETTEEEEECTTTC
T ss_pred CcceE-eecC--Ccc--EEEEeCCEEEEEeecCCCCceEEEEECCCCCe-EEEeCCCc----eEeeEECCEEEEEeCCCc
Confidence 65433 2211 122 333 566666554 345666667764433 33323222 456778888876654 67
Q ss_pred eEEEEECCCCceEEEEecCCccEEEEEEcCCEEEEEeCC--CcEEEEEcCCCeeeeEeccCCCcEEEEEEecCCCEEEEE
Q 001042 987 VANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDD--WTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITG 1064 (1178)
Q Consensus 987 ~I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~~l~sgs~d--g~I~iwd~~~~~~~~~~~~h~~~I~~l~~spdg~~L~sg 1064 (1178)
.|...++..+.....+.+.. . ..+..+++.|+-...+ ..|..-++..+. ...+.. ..+ ..|+|++++|.-+
T Consensus 168 ~Iy~~~l~g~~~~~l~~~~~-~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~--~~~--~~~~~~g~~Iy~~ 240 (302)
T 3s25_A 168 QLYRYDTASQSEALFYDCNC-Y-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLTE--ANI--EHYNVYGSLIFYQ 240 (302)
T ss_dssp CEEEEETTTTEEEEEECSCE-E-EEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECSC--SCE--EEEEEETTEEEEE
T ss_pred eEEEEECCCCCEEEEeCCCc-c-ceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEeC--CCc--ceEEECCCEEEEE
Confidence 88888887665443333211 1 1233467766665543 345555655433 344432 233 3478889888765
Q ss_pred e--CCCcEEEEECCCCceEEEEEecccCCcEEEEecCCCEEEEEe
Q 001042 1065 S--SDGLLRFWENDDGGIKCVKNVTIHSSAILSINAGDHWLGIGA 1107 (1178)
Q Consensus 1065 s--~Dg~I~iwd~~~~~~~~~~~~~~h~~~i~~is~dg~~Lasgs 1107 (1178)
+ ..+.|..-+++......+.. + .+.++++.+.+|+-..
T Consensus 241 ~~~~~~~i~~~~~DG~~r~~l~~--~---~~~~i~i~~d~Iy~td 280 (302)
T 3s25_A 241 RGGDNPALCVVKNDGTGFKELAK--G---EFCNINVTSQYVYFTD 280 (302)
T ss_dssp ECSSSCEEEEEETTSCCCEEEEE--S---CEEEEEECSSEEEEEE
T ss_pred ECCCCcEEEEEECCCCccEEeeC--C---ccceEEEeCCEEEEEE
Confidence 3 23566666776543333321 1 2446677777776654
No 340
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=91.91 E-value=12 Score=43.89 Aligned_cols=263 Identities=9% Similarity=0.006 Sum_probs=139.5
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEecCCC-------------------------Cce--EEEEEeC----CCeEEEEe-CC
Q 001042 896 VVSGSDDQSVLVWDKQTSQLLEELKGHD-------------------------AQV--SCVRMLS----GERVLTAS-HD 943 (1178)
Q Consensus 896 l~sgs~dg~I~iwd~~t~~~~~~l~~h~-------------------------~~V--~~l~~~~----~~~l~sgs-~d 943 (1178)
+.||+..|.++|+-+.+++.++.+...+ +.. ..+.+.+ |.+++.-. .+
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 7789999999999999999888764211 111 1344443 45555555 56
Q ss_pred CeEEEEeCCCCeEEEEecC-CCCCEEEEEEe--CCCCEEEEEeC-------CCeEE------------EEECCCCceEEE
Q 001042 944 GTVKMWDVRTDTCVATVGR-CSSAVLCMEYD--DSTGILAAGGR-------DAVAN------------IWDIRAGRQMHK 1001 (1178)
Q Consensus 944 g~V~iwd~~~~~~~~~~~~-~~~~I~~l~~s--p~~~~l~sgs~-------dg~I~------------lwD~~~~~~~~~ 1001 (1178)
..|-..+++.-++-+.+.. ....+.++++- |+..++++++. ||... ..|..+.+...+
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~Q 232 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAFQ 232 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEEE
T ss_pred cceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEEE
Confidence 7788888888887666543 35678888886 68888888874 33210 112222221111
Q ss_pred EecCCc-cEEEEEEcCCEEEEEeCC---------------C-------------------------cEEEEEcCC----C
Q 001042 1002 FLGHTK-WIRSIRMDRDTVITGSDD---------------W-------------------------TARMWSISR----G 1036 (1178)
Q Consensus 1002 ~~~~~~-~v~~l~~~~~~l~sgs~d---------------g-------------------------~I~iwd~~~----~ 1036 (1178)
+.-..+ .-.....++.+.++.+.+ . .|.+.|.+. +
T Consensus 233 v~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~~~ 312 (638)
T 3sbq_A 233 VIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDGKD 312 (638)
T ss_dssp EEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTTBC
T ss_pred EEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccccccccC
Confidence 100000 000001122233333221 1 233333332 1
Q ss_pred eeeeEeccCCCcEEEEEEecCCCEEEEEe-CCCcEEEEECCCC------c-----eEEEEEecccCCc-EEEEecCCCEE
Q 001042 1037 TCDAVLACHAGPVQCVEYSSSDRGIITGS-SDGLLRFWENDDG------G-----IKCVKNVTIHSSA-ILSINAGDHWL 1103 (1178)
Q Consensus 1037 ~~~~~~~~h~~~I~~l~~spdg~~L~sgs-~Dg~I~iwd~~~~------~-----~~~~~~~~~h~~~-i~~is~dg~~L 1103 (1178)
.....+..-.....++..+|||+++++++ .+.++.++|++.- + -......+...++ -+.+.++|...
T Consensus 313 ~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aY 392 (638)
T 3sbq_A 313 SKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAY 392 (638)
T ss_dssp CSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEE
T ss_pred CceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceE
Confidence 11111111223346788999999988766 6889999998731 1 0112222222222 25667888666
Q ss_pred EEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEE------EcCCCCEEEEEe
Q 001042 1104 GIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIA------SDLERKRICSGG 1164 (1178)
Q Consensus 1104 asgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~la------fspdg~~Las~s 1164 (1178)
.+-.-|..|.-|++.... ..+ .|.+. +..+....-|-.+- .+. -.+||++|++..
T Consensus 393 TtlfidSqvvkWni~~a~-~~~--~g~~~--~~v~~k~dv~YqpG-H~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 393 TTLFIDSQVVKWNMEEAV-RAY--KGEKV--NYIKQKLDVHYQPG-HLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEETTTTEEEEEEHHHHH-HHH--TTCCC--CCEEEEEECSSCEE-EEEETTTTSTTCCSCEEEEEE
T ss_pred eeeeecceEEEEeccHHH-HHh--cCccC--CeeeeccccccCCc-ccccCCCccCCCCccEEEEec
Confidence 666789999999986320 111 12221 23333333333221 222 257899998874
No 341
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=91.36 E-value=23 Score=40.11 Aligned_cols=244 Identities=9% Similarity=0.060 Sum_probs=134.1
Q ss_pred eEEEEEeCCCeEEEEeCCCeEEEEeCCCC--------e---EEEEecC-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 001042 926 VSCVRMLSGERVLTASHDGTVKMWDVRTD--------T---CVATVGR-CSSAVLCMEYDDSTGILAAGGRDAVANIWDI 993 (1178)
Q Consensus 926 V~~l~~~~~~~l~sgs~dg~V~iwd~~~~--------~---~~~~~~~-~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~ 993 (1178)
+..++. .....+.-..||.|..|-.... . ....+.. ....+..++.+....+.++-+.||.|+.|-.
T Consensus 55 i~~i~~-G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~ 133 (389)
T 3kci_A 55 PVQLIG-GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGE 133 (389)
T ss_dssp EEEEEE-ETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEEC
T ss_pred eEEEEe-CCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeC
Confidence 444432 3455666678999999964321 1 1112221 2334566777777777777888999999965
Q ss_pred CCCc-----------eEEEEec-CCccEEEEEEcCCEEEEEeCCCcEEEEEcCCC-e----------eeeEecc-CCCcE
Q 001042 994 RAGR-----------QMHKFLG-HTKWIRSIRMDRDTVITGSDDWTARMWSISRG-T----------CDAVLAC-HAGPV 1049 (1178)
Q Consensus 994 ~~~~-----------~~~~~~~-~~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~-~----------~~~~~~~-h~~~I 1049 (1178)
...- ....+.. ....|..++......++-..||.|+.|-.... + ....+.. ....|
T Consensus 134 n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v 213 (389)
T 3kci_A 134 AEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRV 213 (389)
T ss_dssp CGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCE
T ss_pred CCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeE
Confidence 4210 0111111 22368888888888888889999999975331 1 1111111 22356
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCC---------ceEEEEEecc-cCCcEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 001042 1050 QCVEYSSSDRGIITGSSDGLLRFWENDDG---------GIKCVKNVTI-HSSAILSINAGDHWLGIGAADNSMSLFHRPQ 1119 (1178)
Q Consensus 1050 ~~l~~spdg~~L~sgs~Dg~I~iwd~~~~---------~~~~~~~~~~-h~~~i~~is~dg~~Lasgs~Dg~I~iwd~~~ 1119 (1178)
..++........++-..||.|..|-.... .......+.. ....|..++......++-..||.|..|-...
T Consensus 214 ~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~ 293 (389)
T 3kci_A 214 VDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGD 293 (389)
T ss_dssp EEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCG
T ss_pred EEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCC
Confidence 66665443356666678999999975421 0111122222 2335777877777777778999999997653
Q ss_pred CccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001042 1120 ERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEAT 1175 (1178)
Q Consensus 1120 ~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~ 1175 (1178)
.-.. +.+.......+.....-....|..++.... ..+....||.|..|-..
T Consensus 294 ~GqL---G~g~~~~~~~P~~v~~l~~~~v~~ia~G~~--h~~al~~~G~v~~wG~n 344 (389)
T 3kci_A 294 YHRL---GHGSDDHVRRPRQVQGLQGKKVIAIATGSL--HCVCCTEDGEVYTWGDN 344 (389)
T ss_dssp GGTT---CSSSCCCEEEEEECGGGTTCCEEEEEECSS--EEEEEETTCCEEEEECC
T ss_pred CCCC---CCCCCccccCCeEeccCCCCCEEEEEeccC--eEEEECCCCCEEEeeCC
Confidence 2111 112111111121111111234666654332 33444678888888654
No 342
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=91.01 E-value=12 Score=42.74 Aligned_cols=140 Identities=11% Similarity=0.099 Sum_probs=87.4
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCcEEEEecCC----CCceEEEEEeC-CCeEEEEeCCCeEEEEeCCCCe--------
Q 001042 889 INSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGH----DAQVSCVRMLS-GERVLTASHDGTVKMWDVRTDT-------- 955 (1178)
Q Consensus 889 ~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~h----~~~V~~l~~~~-~~~l~sgs~dg~V~iwd~~~~~-------- 955 (1178)
++.+|..++.+-. +.||.-++..+...+.+... -..+..+..++ |++++.. .+.+|.|..+..+.
T Consensus 28 ~~~n~t~i~~a~~-n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~-g~~~V~Vv~LP~~~~~~~~~~~ 105 (452)
T 3pbp_A 28 SSQNGTRIVFIQD-NIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLF-NDNEIFVMEVPWGYSNVEDVSI 105 (452)
T ss_dssp EETTTTEEEEEET-TEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEE-CSSEEEEEECCTTCSCCCCHHH
T ss_pred EEcCCCEEEEEEC-CEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEe-cCCeEEEEEecCccccCccccc
Confidence 4566666666553 67777777644434444332 23577788884 5555544 56688888876321
Q ss_pred ----EEEEecC------CCCCEEEEEEeC---CCCEEEEEeCCCeEEEEECCCCc--eEEEEe---------cCCccEEE
Q 001042 956 ----CVATVGR------CSSAVLCMEYDD---STGILAAGGRDAVANIWDIRAGR--QMHKFL---------GHTKWIRS 1011 (1178)
Q Consensus 956 ----~~~~~~~------~~~~I~~l~~sp---~~~~l~sgs~dg~I~lwD~~~~~--~~~~~~---------~~~~~v~~ 1011 (1178)
....+.- ....|..+.|+| .+..|++-..|+.|++||+.... +. .+. .....|.+
T Consensus 106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S 184 (452)
T 3pbp_A 106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITD 184 (452)
T ss_dssp HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEE
T ss_pred ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEE
Confidence 1122221 256799999999 46689999999999999998522 22 222 12256888
Q ss_pred EEEcCC----EEEEEeCCCcEEEE
Q 001042 1012 IRMDRD----TVITGSDDWTARMW 1031 (1178)
Q Consensus 1012 l~~~~~----~l~sgs~dg~I~iw 1031 (1178)
++|.++ ++++.+.+|.|+-.
T Consensus 185 ~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 185 LEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEECTTSSCEEEEECTTSCEEEEE
T ss_pred EEEcCCCcEEEEEecCCCCCEEEE
Confidence 899554 34445577888753
No 343
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=89.34 E-value=34 Score=39.01 Aligned_cols=223 Identities=9% Similarity=0.024 Sum_probs=122.5
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCc----------eeeEeecccccceEEEecCCCEEEEEeCCCcEEEEEC--CC-CcE--
Q 001042 851 AGFFISGSTDCLVKIWDPSLRGS----------ELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDK--QT-SQL-- 915 (1178)
Q Consensus 851 ~~~Lasgs~Dg~I~iWd~~~~~~----------~~~~~l~~h~~~V~~~s~d~~~l~sgs~dg~I~iwd~--~t-~~~-- 915 (1178)
+.+.+.-..||.|..|-.+..+. ......-.....|..++......+.-..||.|..|-. .. +++
T Consensus 84 ~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~ 163 (423)
T 3mvd_K 84 GMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGL 163 (423)
T ss_dssp SSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEES
T ss_pred CCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCc
Confidence 55666677889999996432111 0001111123457778777778888889999999975 22 221
Q ss_pred -------EEEecCCCCceEEEEEeCCCeEEEEeCCCeEEEEeCCCC-----------------------eEEEEecCCCC
Q 001042 916 -------LEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTD-----------------------TCVATVGRCSS 965 (1178)
Q Consensus 916 -------~~~l~~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~-----------------------~~~~~~~~~~~ 965 (1178)
..........|..++. ...+.++-..||.|..|-.... .+.........
T Consensus 164 ~~~~~~~~p~~~~~~~~i~~va~-G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~ 242 (423)
T 3mvd_K 164 TIDGNKRTPIDLMEGTVCCSIAS-GADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAK 242 (423)
T ss_dssp BTTBCEEEEEESSTTCCEEEEEE-CSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCC
T ss_pred CCCCCCceeeEecCCCcEEEEec-CCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCCc
Confidence 1111112345666654 3445566678999999964321 11111112233
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-----------ceEEEEecCCccEEEEEEcCCEEEEEeCCCcEEEEEcC
Q 001042 966 AVLCMEYDDSTGILAAGGRDAVANIWDIRAG-----------RQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSIS 1034 (1178)
Q Consensus 966 ~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~-----------~~~~~~~~~~~~v~~l~~~~~~l~sgs~dg~I~iwd~~ 1034 (1178)
.|..++.... ..++.-..+|.++.|-.... ............|..++......+.-..||.|+.|-..
T Consensus 243 ~v~~i~~g~~-~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G~~ht~alt~~G~v~~wG~n 321 (423)
T 3mvd_K 243 PFEAIWATNY-CTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQHHTVILTTDLKCSVVGRP 321 (423)
T ss_dssp CEEEEEEETT-EEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEECSSEEEEEETTCCEEEEECC
T ss_pred cEEEEEECCc-EEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEcccCeEEEEeCCCcEEEEECC
Confidence 4555555422 22333357888888864321 11111112245678888877777788899999999753
Q ss_pred CC------------eeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 001042 1035 RG------------TCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDD 1077 (1178)
Q Consensus 1035 ~~------------~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~ 1077 (1178)
.. .....+..-...|..++... ..-++-..||.|..|-...
T Consensus 322 ~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~--~hs~alt~~G~v~~wG~n~ 374 (423)
T 3mvd_K 322 EYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGE--VCSYAVTIDGKLYSWGSGV 374 (423)
T ss_dssp GGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEET--TEEEEEETTSCEEEEECCT
T ss_pred CCCCCCCCCccccccCceEeccCCCCEEEEEcCC--CeEEEEcCCCCEEEECCCC
Confidence 21 11122222223566666553 3344446788899997553
No 344
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=88.87 E-value=33 Score=38.17 Aligned_cols=57 Identities=9% Similarity=0.026 Sum_probs=36.8
Q ss_pred cEEEEEEc---------CCEEEEEeCCCcEEEEEcCCCeeeeE---eccCCCcEEEEEEecCCCEEEEE
Q 001042 1008 WIRSIRMD---------RDTVITGSDDWTARMWSISRGTCDAV---LACHAGPVQCVEYSSSDRGIITG 1064 (1178)
Q Consensus 1008 ~v~~l~~~---------~~~l~sgs~dg~I~iwd~~~~~~~~~---~~~h~~~I~~l~~spdg~~L~sg 1064 (1178)
.+..+++. ++++++....+.|...++..++.... +......+..+++.|||.+.++.
T Consensus 272 ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~t 340 (353)
T 2g8s_A 272 AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLT 340 (353)
T ss_dssp CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEE
T ss_pred CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEE
Confidence 45666662 44666666777888888876543322 22233578999999999866643
No 345
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=87.55 E-value=43 Score=38.00 Aligned_cols=285 Identities=13% Similarity=0.084 Sum_probs=154.0
Q ss_pred cccceEEEecCCCEEEEEeCCCcEEEEECCC-Cc----------EEEEecC-CCCceEEEEEeCCCeEEEEeCCCeEEEE
Q 001042 882 HTRTVRAINSDRGKVVSGSDDQSVLVWDKQT-SQ----------LLEELKG-HDAQVSCVRMLSGERVLTASHDGTVKMW 949 (1178)
Q Consensus 882 h~~~V~~~s~d~~~l~sgs~dg~I~iwd~~t-~~----------~~~~l~~-h~~~V~~l~~~~~~~l~sgs~dg~V~iw 949 (1178)
....|..++..+...+.-..||.|..|-... ++ ....+.. ....|..++......++....++.|..|
T Consensus 14 ~~~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~w 93 (406)
T 4d9s_A 14 PPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSW 93 (406)
T ss_dssp -CCCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEE
T ss_pred CccceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEE
Confidence 3446777877777878888899999996432 11 1112221 2335666665444444444444699999
Q ss_pred eCCCC---------eE--EEEecC-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc----------eE-EEEec-C
Q 001042 950 DVRTD---------TC--VATVGR-CSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGR----------QM-HKFLG-H 1005 (1178)
Q Consensus 950 d~~~~---------~~--~~~~~~-~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~----------~~-~~~~~-~ 1005 (1178)
-.... .. ...+.. ....|..++.. ..+.++-..+|.|+.|-....- .. ..+.. .
T Consensus 94 G~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G--~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~ 171 (406)
T 4d9s_A 94 GWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACG--DSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFE 171 (406)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGT
T ss_pred cCCCCcCCCCCCCCccccceEecccCCCCEEEEEEC--hhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccC
Confidence 64321 11 111111 23356666654 3445566789999999754311 01 11111 1
Q ss_pred CccEEEEEEcCCEEEEEeCCCcEEEEEcCCC-e----------eeeEecc-CCCcEEEEEEecCCCEEEEEeCCCcEEEE
Q 001042 1006 TKWIRSIRMDRDTVITGSDDWTARMWSISRG-T----------CDAVLAC-HAGPVQCVEYSSSDRGIITGSSDGLLRFW 1073 (1178)
Q Consensus 1006 ~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~-~----------~~~~~~~-h~~~I~~l~~spdg~~L~sgs~Dg~I~iw 1073 (1178)
...|..++......+.-..||.|+.|-.... + ....+.. ....|..++.. ....+.-..+|.|..|
T Consensus 172 ~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G--~~ht~~l~~~G~v~~w 249 (406)
T 4d9s_A 172 GIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACG--WRHTISVSYSGALYTY 249 (406)
T ss_dssp TCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEEC--SSEEEEEETTCCEEEE
T ss_pred CCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEEC--CCcEEEEcCCCCEEEe
Confidence 2368888888888888889999999974331 1 0111111 12345555543 3445555689999999
Q ss_pred ECCCCc---------eEEEEEec-ccCCcEEEEecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCC
Q 001042 1074 ENDDGG---------IKCVKNVT-IHSSAILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQK 1143 (1178)
Q Consensus 1074 d~~~~~---------~~~~~~~~-~h~~~i~~is~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~ 1143 (1178)
-..... ......+. .....|..++......++-..||.|..|-....-.. +.+..............
T Consensus 250 G~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqL---G~g~~~~~~~p~~v~~~ 326 (406)
T 4d9s_A 250 GWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQV---GVGNNLDQCSPVQVRFP 326 (406)
T ss_dssp ECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTT---CSSSSSCEEEEEEECCG
T ss_pred eCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCC---CCCCCCCCccCEEEecc
Confidence 754320 11111222 223457788877777777889999999976532111 11222211122222112
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001042 1144 TVAVVRCIASDLERKRICSGGRNGLLRLWEAT 1175 (1178)
Q Consensus 1144 h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~ 1175 (1178)
....|..++... ...+.-..||.|..|--.
T Consensus 327 ~~~~v~~va~G~--~hs~alt~~G~v~~wG~n 356 (406)
T 4d9s_A 327 DDQKVVQVSCGW--RHTLAVTERNNVFAWGRG 356 (406)
T ss_dssp GGCCEEEEEECS--SEEEEEETTSCEEEEECC
T ss_pred CCCcEEEEEeCC--CeEEEEeCCCCEEEecCC
Confidence 223466665433 233344578888888643
No 346
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=87.17 E-value=41 Score=37.35 Aligned_cols=71 Identities=8% Similarity=0.133 Sum_probs=43.5
Q ss_pred CceEEEEEeCCCe-EEEEeCCCeEEEEeCCCCeEEEEe-------cCCCCCEEEEEEeCC---CCEEEEEe-C-------
Q 001042 924 AQVSCVRMLSGER-VLTASHDGTVKMWDVRTDTCVATV-------GRCSSAVLCMEYDDS---TGILAAGG-R------- 984 (1178)
Q Consensus 924 ~~V~~l~~~~~~~-l~sgs~dg~V~iwd~~~~~~~~~~-------~~~~~~I~~l~~sp~---~~~l~sgs-~------- 984 (1178)
...+.|+|.++.. ++++...|.|++++.. +.....+ .........++++|+ +..|.+.. .
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 3467888885444 7777788999999853 4321111 112346789999996 55555443 2
Q ss_pred CCeEEEEECCC
Q 001042 985 DAVANIWDIRA 995 (1178)
Q Consensus 985 dg~I~lwD~~~ 995 (1178)
...|..|+...
T Consensus 97 ~~~v~r~~~~~ 107 (353)
T 2g8s_A 97 GTAVGYGRLSD 107 (353)
T ss_dssp EEEEEEEEECT
T ss_pred eeEEEEEEECC
Confidence 23566676653
No 347
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=86.72 E-value=4.5 Score=41.81 Aligned_cols=139 Identities=6% Similarity=-0.098 Sum_probs=75.7
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceE------EEEe--cCCccEEEEEEcCC-EEEEEeCCCcEEEEEcCC
Q 001042 965 SAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQM------HKFL--GHTKWIRSIRMDRD-TVITGSDDWTARMWSISR 1035 (1178)
Q Consensus 965 ~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~------~~~~--~~~~~v~~l~~~~~-~l~sgs~dg~I~iwd~~~ 1035 (1178)
..+..++|+|+|.+.++ .+|.++-.+..+.... ..+- +.. .-.++.++++ .|..+ .||.|+-++-.+
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav-~dG~iyr~~pP~ 116 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV-SKDKLYKASPPQ 116 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE-ETTEEEEESCCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe-CCCEEEEeCCCc
Confidence 36779999999986666 7788777776542211 1110 111 1357778776 33333 679998887533
Q ss_pred Ceeee-----Ee--ccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCc-------eEEEEEecccCCcEEEEecCCC
Q 001042 1036 GTCDA-----VL--ACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGG-------IKCVKNVTIHSSAILSINAGDH 1101 (1178)
Q Consensus 1036 ~~~~~-----~~--~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~-------~~~~~~~~~h~~~i~~is~dg~ 1101 (1178)
..... +. .+-=..+..+.++|+|.+.+.. |+.+.-+...++. ...+..-..|.-.+..+.+++.
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~ 194 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT 194 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCc
Confidence 21110 11 1111467999999999876666 7775433222110 0111111123333444567777
Q ss_pred EEEEEeCCCc
Q 001042 1102 WLGIGAADNS 1111 (1178)
Q Consensus 1102 ~Lasgs~Dg~ 1111 (1178)
+.++. ++.
T Consensus 195 l~~v~--~g~ 202 (236)
T 1tl2_A 195 LFGVQ--GGK 202 (236)
T ss_dssp EEEEE--TTE
T ss_pred EEEEe--CCe
Confidence 76665 553
No 348
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=86.25 E-value=44 Score=36.76 Aligned_cols=265 Identities=12% Similarity=0.040 Sum_probs=134.1
Q ss_pred CEEEEEeCCCcEEEEECCCC-------cEEEEec-CCCCceEEEEE-eCCCeEEEEeCCCeEEEEe---CCC------Ce
Q 001042 894 GKVVSGSDDQSVLVWDKQTS-------QLLEELK-GHDAQVSCVRM-LSGERVLTASHDGTVKMWD---VRT------DT 955 (1178)
Q Consensus 894 ~~l~sgs~dg~I~iwd~~t~-------~~~~~l~-~h~~~V~~l~~-~~~~~l~sgs~dg~V~iwd---~~~------~~ 955 (1178)
..+++.+.+|.|+--.+.+- +-+..+. ...+.+..+.. +..+.++.-+..|.++-.. +.. |.
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~ 83 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQ 83 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCE
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCE
Confidence 45677788888876553221 1111111 12233443333 3667777777888765543 332 23
Q ss_pred EEEEe-c-CCCCCEEEEEEeC---CCCEEEEEeCCCeEEEEECCCCc-------eEEEEecCCccEEEEE-E-cCCEEEE
Q 001042 956 CVATV-G-RCSSAVLCMEYDD---STGILAAGGRDAVANIWDIRAGR-------QMHKFLGHTKWIRSIR-M-DRDTVIT 1021 (1178)
Q Consensus 956 ~~~~~-~-~~~~~I~~l~~sp---~~~~l~sgs~dg~I~lwD~~~~~-------~~~~~~~~~~~v~~l~-~-~~~~l~s 1021 (1178)
.+..+ . .....|.++..-+ +...++..+.+|.++...+.... ....+... +.+..+. . ..+.++.
T Consensus 84 ~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~-D~lv~~~~~~~~d~ill 162 (327)
T 3uc1_A 84 HVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDN-DELVGAVLCSAGDDLLL 162 (327)
T ss_dssp EHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTT-CCEEEEEEECTTCEEEE
T ss_pred EHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCC-CEEEEEEEecCCCEEEE
Confidence 22111 1 1244565554433 57789999999999998865422 11223332 3343333 3 4458888
Q ss_pred EeCCCcEEEEEcC--C---------CeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCce-----EEEEE
Q 001042 1022 GSDDWTARMWSIS--R---------GTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGI-----KCVKN 1085 (1178)
Q Consensus 1022 gs~dg~I~iwd~~--~---------~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~-----~~~~~ 1085 (1178)
.+.+|.+..+... . |.....+. ....|.++...+++..++..+..|.++.-.+..-.. .-+..
T Consensus 163 ~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~ 241 (327)
T 3uc1_A 163 VSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLT 241 (327)
T ss_dssp EETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEES
T ss_pred EECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEE
Confidence 9999999888776 2 11111222 244577776666677899999999998887642100 11221
Q ss_pred ec--ccCCcEEEE--ecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcC-CCCEE
Q 001042 1086 VT--IHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDL-ERKRI 1160 (1178)
Q Consensus 1086 ~~--~h~~~i~~i--s~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafsp-dg~~L 1160 (1178)
+. .....+..+ ..+...++..+.+|.+.-++...-+..+....|. ..+ .+ .....|.+++..+ +..-+
T Consensus 242 ~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i~~~gR~a~GV-----~~i-~l-~~~d~vv~~~~~~~~~~~~ 314 (327)
T 3uc1_A 242 VMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGV-----RLM-NL-GEGDTLLAIARNAEESGDD 314 (327)
T ss_dssp SCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGSCBCCTTSCCE-----ECT-TC-CTTCCEEEEEECC------
T ss_pred EEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhhccccCCCCCCe-----EeE-ec-CCCCEEEEEEEcCCCcceE
Confidence 21 112334333 2344566667788888878776433322222221 111 11 1234566666544 34456
Q ss_pred EEEeCCC
Q 001042 1161 CSGGRNG 1167 (1178)
Q Consensus 1161 as~s~Dg 1167 (1178)
.+.+.+|
T Consensus 315 ~~~~~~g 321 (327)
T 3uc1_A 315 NAVDANG 321 (327)
T ss_dssp -------
T ss_pred EEEecCC
Confidence 6666555
No 349
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=84.59 E-value=54 Score=36.38 Aligned_cols=221 Identities=12% Similarity=0.061 Sum_probs=110.4
Q ss_pred cceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEeec---ccccceE--EEecC---CCEEEEE
Q 001042 828 GAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLK---GHTRTVR--AINSD---RGKVVSG 899 (1178)
Q Consensus 828 ~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l~---~h~~~V~--~~s~d---~~~l~sg 899 (1178)
..-..|+|. +||+++++ ..+|.|+++|.+ +......+. ....... +++|+ +..|.++
T Consensus 29 ~~P~~ia~~------------pdG~l~V~-e~~g~I~~~d~~--G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~ 93 (354)
T 3a9g_A 29 EVPWSIAPL------------GGGRYLVT-ERPGRLVLISPS--GKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLY 93 (354)
T ss_dssp SCEEEEEEE------------ETTEEEEE-ETTTEEEEECSS--CEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEE
T ss_pred CCCeEEEEc------------CCCeEEEE-eCCCEEEEEeCC--CceEeeccceeecCCCceeeEEeCCCCCcCCEEEEE
Confidence 345678887 78875555 556999999733 322222221 1112233 56776 5555544
Q ss_pred eC----C----CcEEEEECCCC--c-----EE-EEecC-CCCceEEEEEe-CCCeEEEEeC-------------CCeEEE
Q 001042 900 SD----D----QSVLVWDKQTS--Q-----LL-EELKG-HDAQVSCVRML-SGERVLTASH-------------DGTVKM 948 (1178)
Q Consensus 900 s~----d----g~I~iwd~~t~--~-----~~-~~l~~-h~~~V~~l~~~-~~~~l~sgs~-------------dg~V~i 948 (1178)
.. + +.|..|+...+ . .+ ..+.. .......++|. ++..+++.+. .|.|.-
T Consensus 94 ~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~r 173 (354)
T 3a9g_A 94 ASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILR 173 (354)
T ss_dssp EEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEE
T ss_pred EeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEE
Confidence 33 3 56777776654 1 11 11221 11124568887 4544444322 245655
Q ss_pred EeCCCC---------eEEEEecCCCCCEEEEEEeC-CCCEEEEEeCCC---eEEEEECCC--------C--------ceE
Q 001042 949 WDVRTD---------TCVATVGRCSSAVLCMEYDD-STGILAAGGRDA---VANIWDIRA--------G--------RQM 999 (1178)
Q Consensus 949 wd~~~~---------~~~~~~~~~~~~I~~l~~sp-~~~~l~sgs~dg---~I~lwD~~~--------~--------~~~ 999 (1178)
++.... ..+... ++ .....++|+| +++++++-...+ .|.+..... + .++
T Consensus 174 i~~dG~~p~~npf~~~~i~a~-G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~ 251 (354)
T 3a9g_A 174 VDEEGRPPADNPFPNSPIWSY-GH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPV 251 (354)
T ss_dssp ECTTSCCCTTSSSTTCCEEEE-CC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCS
T ss_pred EcCCCCCCCCCCCCCCcEEEE-cc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCE
Confidence 555321 011111 22 2346799999 555444332211 233322110 0 122
Q ss_pred EEEecCCccEEEEEE---------cCCEEEEEeCCCcEEEEEcCCC-eee--eEe-ccCCCcEEEEEEecCCCEEEEEe
Q 001042 1000 HKFLGHTKWIRSIRM---------DRDTVITGSDDWTARMWSISRG-TCD--AVL-ACHAGPVQCVEYSSSDRGIITGS 1065 (1178)
Q Consensus 1000 ~~~~~~~~~v~~l~~---------~~~~l~sgs~dg~I~iwd~~~~-~~~--~~~-~~h~~~I~~l~~spdg~~L~sgs 1065 (1178)
..+.........+++ +++++++....+.|...++... +.. ..+ .+....+..+++.|||.+.++..
T Consensus 252 ~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 252 IDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred eecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 222112234566666 3345555556678888888753 221 222 22245788999999997666653
No 350
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=83.40 E-value=17 Score=37.45 Aligned_cols=177 Identities=9% Similarity=-0.031 Sum_probs=90.9
Q ss_pred CCEEEEEeCCCeEEEEECCCCc------eEEEEecC--CccEEEEEEcCC-EEEEEeCCCcEEEEEcCCCeeeeEeccCC
Q 001042 976 TGILAAGGRDAVANIWDIRAGR------QMHKFLGH--TKWIRSIRMDRD-TVITGSDDWTARMWSISRGTCDAVLACHA 1046 (1178)
Q Consensus 976 ~~~l~sgs~dg~I~lwD~~~~~------~~~~~~~~--~~~v~~l~~~~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~ 1046 (1178)
..+|++...| +++.=...++. ...++ +. =..+..++++++ .|.+. .+|.++-.+..+.... .+.+..
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~i-G~~gw~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~-~W~~s~ 79 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLI-GKGGWSNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDND-NWMGRA 79 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEE-ESSSCTTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTC-CHHHHC
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhcccc-CccccccceeEEECCCccEEEE-eCCeEEEECCCCCCcc-cccccc
Confidence 3455666666 55554444333 11222 22 236678999766 34444 7777776665442211 111111
Q ss_pred Cc--------EEEEEEecCCCEEEEEeCCCcEEEEECCCCc---e----EEEEEecccCCcEEEEecCCCEEEEEeCCCc
Q 001042 1047 GP--------VQCVEYSSSDRGIITGSSDGLLRFWENDDGG---I----KCVKNVTIHSSAILSINAGDHWLGIGAADNS 1111 (1178)
Q Consensus 1047 ~~--------I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~---~----~~~~~~~~h~~~i~~is~dg~~Lasgs~Dg~ 1111 (1178)
.. ..++.|+|+|.+.++ .||.|.-++-.+.. + ..+..-.-..-....+.|+|.+.++. |+.
T Consensus 80 t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ 155 (236)
T 1tl2_A 80 KKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQ 155 (236)
T ss_dssp EEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTE
T ss_pred cEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCc
Confidence 12 478999999987777 56988877753321 0 11111111122334447899888877 777
Q ss_pred EEEEEcCCCccccccCCCCCccceeEeec--cCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001042 1112 MSLFHRPQERLGGFSGTGSKMSGWQLYRT--PQKTVAVVRCIASDLERKRICSGGRNGLLRLWEA 1174 (1178)
Q Consensus 1112 I~iwd~~~~~~~~~~~~g~~~~~~~~~~~--~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv 1174 (1178)
++-+..+.. .+ ..|-...+ -......-+.+.|+++|.+.+.. +| ++|..
T Consensus 156 lyr~~~P~~-------~~---~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g--~~Y~~ 206 (236)
T 1tl2_A 156 FYKALPPVS-------NQ---DNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GG--KFYED 206 (236)
T ss_dssp EEEECCCSS-------TT---CCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TT--EEEEE
T ss_pred EEecCCCCC-------CC---cccccccceeccCCcceEEEEEECCCCcEEEEe--CC--eEEec
Confidence 544333311 11 11110011 11223345668899999887766 77 44443
No 351
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=81.56 E-value=64 Score=34.95 Aligned_cols=170 Identities=6% Similarity=-0.063 Sum_probs=95.0
Q ss_pred CCCCEEEEEeCC--------------CcEEEEcCCCCCceeeEeecccccceEEEecCCCEEEEEe----CCCcEEEEEC
Q 001042 849 EDAGFFISGSTD--------------CLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGS----DDQSVLVWDK 910 (1178)
Q Consensus 849 ~d~~~Lasgs~D--------------g~I~iWd~~~~~~~~~~~l~~h~~~V~~~s~d~~~l~sgs----~dg~I~iwd~ 910 (1178)
++|++|+-+... ..|+..+++ +.+. ..+.. .....++++++.|+-.. .+..|...++
T Consensus 62 ~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d--g~~~-~~l~~--~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~ 136 (302)
T 3s25_A 62 ADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN--GHGS-TVLDP--DPCIYASLIGNYIYYLHYDTQTATSLYRIRI 136 (302)
T ss_dssp ECSSEEEEEEECC------CCSSCCSEEEEEEETT--SCCC-EEEEC--SCEEEEEEETTEEEEEEESSSSCEEEEEEET
T ss_pred EcCCEEEEEECCCCcccccceeccCCCeEEEEeCC--CCcc-eEeec--CCccEEEEeCCEEEEEeecCCCCceEEEEEC
Confidence 678888766543 356666655 3332 22221 22336788999988765 3445666666
Q ss_pred CCCcEEEEecCCCCceEEEEEeCCCeEE-EEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEeCCCCEEEEEeCC--Ce
Q 001042 911 QTSQLLEELKGHDAQVSCVRMLSGERVL-TASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRD--AV 987 (1178)
Q Consensus 911 ~t~~~~~~l~~h~~~V~~l~~~~~~~l~-sgs~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~d--g~ 987 (1178)
+... ...+..+.. ..+.| .++.|+ +......|...++..+.....+.+ ... ..++|++.+|+-...+ ..
T Consensus 137 dGs~-~~~lt~~~~--~~~~~-~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~ 208 (302)
T 3s25_A 137 DGEE-KKKIKNHYL--FTCNT-SDRYFYYNNPKNGQLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVNRDNA 208 (302)
T ss_dssp TSCC-CEEEESSCC--CCSEE-ETTEEEEECTTTCCEEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGGGTTE
T ss_pred CCCC-eEEEeCCCc--eEeeE-ECCEEEEEeCCCceEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcCCCcE
Confidence 6433 344443332 22333 344555 433467888888877665444332 222 3466888888776543 36
Q ss_pred EEEEECCCCceEEEEecCCccEEEEEEcCCEEEEEeC--CCcEEEEEcC
Q 001042 988 ANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSD--DWTARMWSIS 1034 (1178)
Q Consensus 988 I~lwD~~~~~~~~~~~~~~~~v~~l~~~~~~l~sgs~--dg~I~iwd~~ 1034 (1178)
|..-++..... ..+. ...+..+++++++|.-++. .+.|..-++.
T Consensus 209 I~~~~ldG~~~-~~Lt--~~~~~~~~~~g~~Iy~~~~~~~~~i~~~~~D 254 (302)
T 3s25_A 209 IVHVNINNPNP-VVLT--EANIEHYNVYGSLIFYQRGGDNPALCVVKND 254 (302)
T ss_dssp EEEECSSSCCC-EECS--CSCEEEEEEETTEEEEEECSSSCEEEEEETT
T ss_pred EEEEECCCCCe-EEEe--CCCcceEEECCCEEEEEECCCCcEEEEEECC
Confidence 77777665442 3332 2344567888887766533 3456666654
No 352
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=79.31 E-value=86 Score=35.07 Aligned_cols=135 Identities=10% Similarity=0.008 Sum_probs=68.1
Q ss_pred CCeEEEEeCCCeEEEEeCC-CCeEEEEe--cCCCCCEEEEEEeC-CCCEEEEEeCCC----eEEEEECCCCceEEEEec-
Q 001042 934 GERVLTASHDGTVKMWDVR-TDTCVATV--GRCSSAVLCMEYDD-STGILAAGGRDA----VANIWDIRAGRQMHKFLG- 1004 (1178)
Q Consensus 934 ~~~l~sgs~dg~V~iwd~~-~~~~~~~~--~~~~~~I~~l~~sp-~~~~l~sgs~dg----~I~lwD~~~~~~~~~~~~- 1004 (1178)
...+++|+..| +.+++.. .++..... ......|.+++++| +...+.+++..| .|...+ ..++.-..+..
T Consensus 22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~ 99 (394)
T 3b7f_A 22 PVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRP 99 (394)
T ss_dssp CCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBC
T ss_pred CCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCcc
Confidence 45677888777 4444432 22222211 13346799999998 334455555554 444432 22322222111
Q ss_pred -------------CCccEEEEEEc----CCEEEEEeCCCcEEEEEcCCCeeeeEecc-------------------CCCc
Q 001042 1005 -------------HTKWIRSIRMD----RDTVITGSDDWTARMWSISRGTCDAVLAC-------------------HAGP 1048 (1178)
Q Consensus 1005 -------------~~~~v~~l~~~----~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-------------------h~~~ 1048 (1178)
....|.+++++ ++.+.++...+.|...+ ..++.-..+.. ....
T Consensus 100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~ 178 (394)
T 3b7f_A 100 PAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPK 178 (394)
T ss_dssp CCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCE
T ss_pred ccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCc
Confidence 11257778885 56777777666655543 22322222211 1235
Q ss_pred EEEEEEecC-CCEEEEEeCCCcEE
Q 001042 1049 VQCVEYSSS-DRGIITGSSDGLLR 1071 (1178)
Q Consensus 1049 I~~l~~spd-g~~L~sgs~Dg~I~ 1071 (1178)
+.++.++|. ...++.+..++.|.
T Consensus 179 i~~i~~d~~~~~~l~vg~~~ggl~ 202 (394)
T 3b7f_A 179 MHSILVDPRDPKHLYIGMSSGGVF 202 (394)
T ss_dssp EEEEEECTTCTTCEEEEEETBEEE
T ss_pred eeEEEECCCCCCEEEEEECCCCEE
Confidence 788999873 34455555444443
No 353
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=75.23 E-value=34 Score=39.58 Aligned_cols=112 Identities=9% Similarity=0.110 Sum_probs=61.2
Q ss_pred CCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEecc------cCCcE--EEEecC---CCEEEEEeC------
Q 001042 1046 AGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNVTI------HSSAI--LSINAG---DHWLGIGAA------ 1108 (1178)
Q Consensus 1046 ~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~------h~~~i--~~is~d---g~~Lasgs~------ 1108 (1178)
-...++++|.|+|+++++-...+.|++++..++....+..+.. ..... ++++|+ +..|.+...
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 3456899999999977765444578888876665444444432 12233 455774 444444332
Q ss_pred -------CCcEEEEEcCCCccccccCCCCCccceeEee--ccCCCcccEEEEEEcCCCCEEEEEeC
Q 001042 1109 -------DNSMSLFHRPQERLGGFSGTGSKMSGWQLYR--TPQKTVAVVRCIASDLERKRICSGGR 1165 (1178)
Q Consensus 1109 -------Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~--~~~~h~~~V~~lafspdg~~Las~s~ 1165 (1178)
...|.-|+.... ...+...+.+. ...........++|.|||++.++.+.
T Consensus 106 ~~~~~~~~~~v~r~~~~~~--------~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKS--------TDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp --CCSCEEEEEEEEEEETT--------TTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CccccccccEEEEEEECCC--------CCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 124555554321 11111112221 11222234789999999998887664
No 354
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=74.39 E-value=1.2e+02 Score=34.21 Aligned_cols=264 Identities=13% Similarity=0.107 Sum_probs=145.4
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCc---------eeeEeecc-cccceEEEecCCCEEEEEeCC-CcEEEEECCCC-c----
Q 001042 851 AGFFISGSTDCLVKIWDPSLRGS---------ELRATLKG-HTRTVRAINSDRGKVVSGSDD-QSVLVWDKQTS-Q---- 914 (1178)
Q Consensus 851 ~~~Lasgs~Dg~I~iWd~~~~~~---------~~~~~l~~-h~~~V~~~s~d~~~l~sgs~d-g~I~iwd~~t~-~---- 914 (1178)
+.+.+.-..||.|..|-....+. .....+.. ....|..++....+.+....+ +.|..|-.... +
T Consensus 25 ~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG~n~~GqLG~g 104 (406)
T 4d9s_A 25 ASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHG 104 (406)
T ss_dssp SSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEECCGGGTTCSS
T ss_pred CCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEEcCCCCcCCCCC
Confidence 44555666788888886432111 01111111 223577777666666666665 49999964321 1
Q ss_pred ----E--EEEecC-CCCceEEEEEeCCCeEEEEeCCCeEEEEeCCCC----------e-EEEEecC-CCCCEEEEEEeCC
Q 001042 915 ----L--LEELKG-HDAQVSCVRMLSGERVLTASHDGTVKMWDVRTD----------T-CVATVGR-CSSAVLCMEYDDS 975 (1178)
Q Consensus 915 ----~--~~~l~~-h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~----------~-~~~~~~~-~~~~I~~l~~sp~ 975 (1178)
. ...+.. ....|..++. ...+.++-..||.|..|-.... . ....+.. ....|..++..
T Consensus 105 ~~~~~~~p~~v~~l~~~~i~~ia~-G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G-- 181 (406)
T 4d9s_A 105 NSSDLFTPLPIKALHGIRIKQIAC-GDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAG-- 181 (406)
T ss_dssp SCCCEEEEEECGGGTTCCEEEEEE-CSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--
T ss_pred CCCccccceEecccCCCCEEEEEE-ChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCcEEEEecC--
Confidence 1 111221 2235666654 3445566678999999975431 1 1111211 12356666554
Q ss_pred CCEEEEEeCCCeEEEEECCCCc----------eE-EEEe-cCCccEEEEEEcCCEEEEEeCCCcEEEEEcCCCe------
Q 001042 976 TGILAAGGRDAVANIWDIRAGR----------QM-HKFL-GHTKWIRSIRMDRDTVITGSDDWTARMWSISRGT------ 1037 (1178)
Q Consensus 976 ~~~l~sgs~dg~I~lwD~~~~~----------~~-~~~~-~~~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~------ 1037 (1178)
..+.++-..+|.++.|-..... .. ..+. .....|..++......+.-..+|.|+.|-....-
T Consensus 182 ~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~v~~wG~n~~GqlG~g~ 261 (406)
T 4d9s_A 182 AEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGD 261 (406)
T ss_dssp SSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSS
T ss_pred CCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcEEEEcCCCCEEEeeCCCCCCCCCCC
Confidence 3445566788999999643211 11 1111 1224677888777777788899999999754311
Q ss_pred -----eeeEecc-CCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCC-c--------e-EEEEEecccCCcEEEEecCCC
Q 001042 1038 -----CDAVLAC-HAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDG-G--------I-KCVKNVTIHSSAILSINAGDH 1101 (1178)
Q Consensus 1038 -----~~~~~~~-h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~-~--------~-~~~~~~~~h~~~i~~is~dg~ 1101 (1178)
....+.. ....|..++-. ....++-..||.|..|-.... + . ............|..++....
T Consensus 262 ~~~~~~p~~v~~~~~~~v~~i~~G--~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~va~G~~ 339 (406)
T 4d9s_A 262 LEDHLIPHKLEALSNSFISQISGG--WRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWR 339 (406)
T ss_dssp CCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEEEEECSS
T ss_pred CcCccccEEecccCCCCEEEEEec--CCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEEEEeCCC
Confidence 0111111 12345555543 344555568999999975431 0 0 111111123346788887777
Q ss_pred EEEEEeCCCcEEEEEcCC
Q 001042 1102 WLGIGAADNSMSLFHRPQ 1119 (1178)
Q Consensus 1102 ~Lasgs~Dg~I~iwd~~~ 1119 (1178)
..++-..||.|..|=...
T Consensus 340 hs~alt~~G~v~~wG~n~ 357 (406)
T 4d9s_A 340 HTLAVTERNNVFAWGRGT 357 (406)
T ss_dssp EEEEEETTSCEEEEECCT
T ss_pred eEEEEeCCCCEEEecCCC
Confidence 777788999999997643
No 355
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=72.95 E-value=1.2e+02 Score=33.73 Aligned_cols=177 Identities=15% Similarity=0.046 Sum_probs=89.3
Q ss_pred CCEEEEEeCCCcEEEEECCC-CcEEEEe--cCCCCceEEEEEeC--CCeEEEEeCCC----eEEEEeCCCCeEEEEecC-
Q 001042 893 RGKVVSGSDDQSVLVWDKQT-SQLLEEL--KGHDAQVSCVRMLS--GERVLTASHDG----TVKMWDVRTDTCVATVGR- 962 (1178)
Q Consensus 893 ~~~l~sgs~dg~I~iwd~~t-~~~~~~l--~~h~~~V~~l~~~~--~~~l~sgs~dg----~V~iwd~~~~~~~~~~~~- 962 (1178)
...|.+|+..| +.+++... ++.-... ......|.++++.+ .+.+.+++..| .|...+ ..++.-..+..
T Consensus 22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~ 99 (394)
T 3b7f_A 22 PVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRP 99 (394)
T ss_dssp CCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBC
T ss_pred CCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCcc
Confidence 34677777766 44444332 2211111 12345688998874 66677776665 444432 23332222211
Q ss_pred -------------CCCCEEEEEEeC-C-CCEEEEEeCCCeEEEEECCCCceEEEEec-------------------CCcc
Q 001042 963 -------------CSSAVLCMEYDD-S-TGILAAGGRDAVANIWDIRAGRQMHKFLG-------------------HTKW 1008 (1178)
Q Consensus 963 -------------~~~~I~~l~~sp-~-~~~l~sgs~dg~I~lwD~~~~~~~~~~~~-------------------~~~~ 1008 (1178)
....|.+++++| + ...+.+++..+.|...+- .++.-..+.. ....
T Consensus 100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~ 178 (394)
T 3b7f_A 100 PAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPK 178 (394)
T ss_dssp CCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----CCCCE
T ss_pred ccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCCCCCc
Confidence 112477899987 2 456666666666555432 2222222211 1235
Q ss_pred EEEEEEcC---CEEEEEeCCCcEEEEEcCCCeeeeEecc-----C--------CCcEEEEEEecC-CCEEEEEeCCCcEE
Q 001042 1009 IRSIRMDR---DTVITGSDDWTARMWSISRGTCDAVLAC-----H--------AGPVQCVEYSSS-DRGIITGSSDGLLR 1071 (1178)
Q Consensus 1009 v~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~-----h--------~~~I~~l~~spd-g~~L~sgs~Dg~I~ 1071 (1178)
+.+|.+++ +.+..+..++.|...+ ..++.-..+.. + ...+.+++++|+ ...++.++..+ |.
T Consensus 179 i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~ 256 (394)
T 3b7f_A 179 MHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IY 256 (394)
T ss_dssp EEEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EE
T ss_pred eeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EE
Confidence 77888863 4566665555444432 22322222211 0 124889999986 35666666544 44
Q ss_pred EEE
Q 001042 1072 FWE 1074 (1178)
Q Consensus 1072 iwd 1074 (1178)
..+
T Consensus 257 ~s~ 259 (394)
T 3b7f_A 257 RMD 259 (394)
T ss_dssp EEE
T ss_pred EeC
Confidence 433
No 356
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=71.64 E-value=1.3e+02 Score=33.31 Aligned_cols=229 Identities=10% Similarity=0.072 Sum_probs=114.9
Q ss_pred ecccccceEEEEeeeccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeeEee----cccccceE--EEecC---C
Q 001042 823 IRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATL----KGHTRTVR--AINSD---R 893 (1178)
Q Consensus 823 l~gH~~~V~~l~fs~~~~~~~~~~~s~d~~~Lasgs~Dg~I~iWd~~~~~~~~~~~l----~~h~~~V~--~~s~d---~ 893 (1178)
+...-..-+.|+|. |||.++++--..|.|++++........+..+ ........ +++|+ +
T Consensus 27 va~gL~~P~~ia~~------------pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~ 94 (347)
T 3das_A 27 VATGLNSPWGLAPL------------PGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASD 94 (347)
T ss_dssp EECCCSSEEEEEEC------------TTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHH
T ss_pred eecCCCCceEEEEc------------CCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccC
Confidence 33333455788886 8999887776689999998542222222222 11222333 56764 3
Q ss_pred CEEEEE-e--CCCcEEEEECCCC----------cEE-EEecC-CCCceEEEEEe-CCCeEEEEeC-------------CC
Q 001042 894 GKVVSG-S--DDQSVLVWDKQTS----------QLL-EELKG-HDAQVSCVRML-SGERVLTASH-------------DG 944 (1178)
Q Consensus 894 ~~l~sg-s--~dg~I~iwd~~t~----------~~~-~~l~~-h~~~V~~l~~~-~~~~l~sgs~-------------dg 944 (1178)
..|... + .++.|.-|....+ +.+ ..+.. ....-..+.|. ++.++++.+. .|
T Consensus 95 g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G 174 (347)
T 3das_A 95 HMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGG 174 (347)
T ss_dssp CEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTT
T ss_pred CEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCC
Confidence 444432 2 3456666665541 111 12221 11234567887 5555555332 24
Q ss_pred eEEEEeCCCC---------eEEEEecCCCCCEEEEEEeCCCCEEEEEe-CCCeEEEEECCCCc-----------------
Q 001042 945 TVKMWDVRTD---------TCVATVGRCSSAVLCMEYDDSTGILAAGG-RDAVANIWDIRAGR----------------- 997 (1178)
Q Consensus 945 ~V~iwd~~~~---------~~~~~~~~~~~~I~~l~~sp~~~~l~sgs-~dg~I~lwD~~~~~----------------- 997 (1178)
.|.-.+.... ..+... ++ .....++|+|+|.+.++-. .++.=.+--+..+.
T Consensus 175 ~IlRi~~dG~ip~~nPf~~~~i~a~-G~-RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~ 252 (347)
T 3das_A 175 KILRMTPDGEPAPGNPFPGSPVYSY-GH-RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFH 252 (347)
T ss_dssp CEEEECTTSSBCTTCSSTTCCEEEB-CC-SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCC
T ss_pred EEEEEeCCCCccCCCCCCCCeEEee-CC-CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCcccc
Confidence 4444444321 111111 22 2346789999877554432 22222222222211
Q ss_pred -eEEEEecCCccEEEEEEc-CCEEEEEeCCCcEEEEEcCCCee----eeEeccCCCcEEEEEEecCCCEEEEEe
Q 001042 998 -QMHKFLGHTKWIRSIRMD-RDTVITGSDDWTARMWSISRGTC----DAVLACHAGPVQCVEYSSSDRGIITGS 1065 (1178)
Q Consensus 998 -~~~~~~~~~~~v~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~----~~~~~~h~~~I~~l~~spdg~~L~sgs 1065 (1178)
++..+..+......+++. +..+......+.|....+..+.. ...+.+..+.+..++..|||.+.++.+
T Consensus 253 ~P~~~~~~~~~ap~G~~~~~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 253 DPVAQWSTDEASPSGIAYAEGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp CCSEEECTTTCCEEEEEEETTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred CCcEecCCCCCCCcceEEEcCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 122232222355667774 44555555566677667665432 223344456899999999997666543
No 357
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=71.52 E-value=1.3e+02 Score=33.53 Aligned_cols=265 Identities=13% Similarity=0.089 Sum_probs=138.4
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCc------eeeE---eec-ccccceEEEecCCCEEEEEeCCCcEEEEECCCC-c-----
Q 001042 851 AGFFISGSTDCLVKIWDPSLRGS------ELRA---TLK-GHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTS-Q----- 914 (1178)
Q Consensus 851 ~~~Lasgs~Dg~I~iWd~~~~~~------~~~~---~l~-~h~~~V~~~s~d~~~l~sgs~dg~I~iwd~~t~-~----- 914 (1178)
...++.-..||+|..|=.+..+. .... ... .....+..++......+.-..||.|..|-.... +
T Consensus 10 ~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~ 89 (389)
T 3kci_A 10 GRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGG 89 (389)
T ss_dssp -----------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSS
T ss_pred cccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCC
Confidence 34455556678888885332111 0001 111 112245566666677777788999999964321 1
Q ss_pred -----EEEEecC-CCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCCC-----------eEEEEecC-CCCCEEEEEEeCC
Q 001042 915 -----LLEELKG-HDAQVSCVRML-SGERVLTASHDGTVKMWDVRTD-----------TCVATVGR-CSSAVLCMEYDDS 975 (1178)
Q Consensus 915 -----~~~~l~~-h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~~-----------~~~~~~~~-~~~~I~~l~~sp~ 975 (1178)
....+.. ....+..++.+ ...+.+.-..||.|..|-.... .....+.. ....|..++..
T Consensus 90 ~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G-- 167 (389)
T 3kci_A 90 TESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG-- 167 (389)
T ss_dssp SCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--
T ss_pred cCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC--
Confidence 1112221 22344555655 4566777788999999964321 11112222 12356666654
Q ss_pred CCEEEEEeCCCeEEEEECCCC-c--------e--EEEEec-CCccEEEEEEcC--CEEEEEeCCCcEEEEEcCCC-e---
Q 001042 976 TGILAAGGRDAVANIWDIRAG-R--------Q--MHKFLG-HTKWIRSIRMDR--DTVITGSDDWTARMWSISRG-T--- 1037 (1178)
Q Consensus 976 ~~~l~sgs~dg~I~lwD~~~~-~--------~--~~~~~~-~~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~-~--- 1037 (1178)
....++...+|.|+.|-.... + . ...+.. ....|..++... ...+.-..||.|+.|-.... +
T Consensus 168 ~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~ 247 (389)
T 3kci_A 168 GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGR 247 (389)
T ss_dssp SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSS
T ss_pred cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCC
Confidence 344556678899999975421 0 0 111111 223567777642 57777788999999964321 1
Q ss_pred -------eeeEecc-CCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCC---------ceEEEEEecc-cCCcEEEEecC
Q 001042 1038 -------CDAVLAC-HAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDG---------GIKCVKNVTI-HSSAILSINAG 1099 (1178)
Q Consensus 1038 -------~~~~~~~-h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~---------~~~~~~~~~~-h~~~i~~is~d 1099 (1178)
....+.. ....|..++.. ....++-..||.|..|-.... .......+.. ....|..++..
T Consensus 248 g~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G 325 (389)
T 3kci_A 248 GGSDGCKVPMKIDSLTGLGVVKVECG--SQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATG 325 (389)
T ss_dssp SSCCCEEEEEECGGGTTSCEEEEEEE--TTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC
T ss_pred CCCCCccccEEecccCCCcEEEEeCC--CCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEec
Confidence 1111221 12246666554 334455568999999975421 1111222222 23457888877
Q ss_pred CCEEEEEeCCCcEEEEEcCC
Q 001042 1100 DHWLGIGAADNSMSLFHRPQ 1119 (1178)
Q Consensus 1100 g~~Lasgs~Dg~I~iwd~~~ 1119 (1178)
....++-..||.|..|-...
T Consensus 326 ~~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 326 SLHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp SSEEEEEETTCCEEEEECCT
T ss_pred cCeEEEECCCCCEEEeeCCC
Confidence 77777778999999998754
No 358
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=68.53 E-value=2.2e+02 Score=34.84 Aligned_cols=172 Identities=9% Similarity=0.059 Sum_probs=85.7
Q ss_pred CCcEEEEcCCCCCceeeEeecccccceE--E-EecCCC-----EEEEEeCC---CcEEEEECCC--CcEEEEecCCCCce
Q 001042 860 DCLVKIWDPSLRGSELRATLKGHTRTVR--A-INSDRG-----KVVSGSDD---QSVLVWDKQT--SQLLEELKGHDAQV 926 (1178)
Q Consensus 860 Dg~I~iWd~~~~~~~~~~~l~~h~~~V~--~-~s~d~~-----~l~sgs~d---g~I~iwd~~t--~~~~~~l~~h~~~V 926 (1178)
...|+.|.+.+...+-...+.+....+. . .+.+++ .+++.+.+ ..+.+.+... ++. ..+......
T Consensus 215 ~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~- 292 (711)
T 4hvt_A 215 PNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKL-QKINMPSDA- 292 (711)
T ss_dssp BCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEE-EECCSCTTC-
T ss_pred CCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcc-eEeecCCcc-
Confidence 3579999876443344444554433332 2 355655 24443322 4556666553 332 233222221
Q ss_pred EEEEEeCCCeEEEE----------eCCCeEEEEeCCCCe-------EEEE-e-cCCCCCEEEEEEeCCCCEEEEEeCCCe
Q 001042 927 SCVRMLSGERVLTA----------SHDGTVKMWDVRTDT-------CVAT-V-GRCSSAVLCMEYDDSTGILAAGGRDAV 987 (1178)
Q Consensus 927 ~~l~~~~~~~l~sg----------s~dg~V~iwd~~~~~-------~~~~-~-~~~~~~I~~l~~sp~~~~l~sgs~dg~ 987 (1178)
.-+....+..++.. ...+.|...|+.++. .... + ......+..+.+..+ ..+++...++.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~ 371 (711)
T 4hvt_A 293 TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNVV 371 (711)
T ss_dssp EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETTE
T ss_pred eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECCE
Confidence 11223344444422 246778889887631 1222 3 223456778888865 56666666764
Q ss_pred --EEEEECCCCc-eEEE-EecC-CccEEEEEE--cCC-EEEEEeC---CCcEEEEEcC
Q 001042 988 --ANIWDIRAGR-QMHK-FLGH-TKWIRSIRM--DRD-TVITGSD---DWTARMWSIS 1034 (1178)
Q Consensus 988 --I~lwD~~~~~-~~~~-~~~~-~~~v~~l~~--~~~-~l~sgs~---dg~I~iwd~~ 1034 (1178)
+.++|+.+++ .... +... .+.+..... +++ .+++.+. -+.+..+|+.
T Consensus 372 ~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 372 AKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 6777776664 2223 2211 234554444 333 4444432 3567777776
No 359
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=65.44 E-value=2e+02 Score=33.16 Aligned_cols=109 Identities=10% Similarity=0.076 Sum_probs=68.0
Q ss_pred ccEEEEEEcCCEEEEEeCCCcEEEEEcC---CCee------------eeEecc-CCCcEEEEEEecCCCEEEEEeCCCcE
Q 001042 1007 KWIRSIRMDRDTVITGSDDWTARMWSIS---RGTC------------DAVLAC-HAGPVQCVEYSSSDRGIITGSSDGLL 1070 (1178)
Q Consensus 1007 ~~v~~l~~~~~~l~sgs~dg~I~iwd~~---~~~~------------~~~~~~-h~~~I~~l~~spdg~~L~sgs~Dg~I 1070 (1178)
..|..++......+.-..||.|+.|-.. .++. ...+.. ....|..++.. ....++-..+|.|
T Consensus 148 ~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G--~~hs~alt~~G~v 225 (473)
T 3of7_A 148 HKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPG--KDHILFLDEEGMV 225 (473)
T ss_dssp CCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEEC--SSEEEEEETTSCE
T ss_pred CcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEec--CCeEEEEeCCCeE
Confidence 5688888888888888899999999751 1111 011111 11236666554 4455666789999
Q ss_pred EEEECCCCc-e------------EEEEEecccCCcEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 001042 1071 RFWENDDGG-I------------KCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRPQ 1119 (1178)
Q Consensus 1071 ~iwd~~~~~-~------------~~~~~~~~h~~~i~~is~dg~~Lasgs~Dg~I~iwd~~~ 1119 (1178)
..|-..... + .....+ ....|..++......++-+.+|.|..|-...
T Consensus 226 ~~wG~n~~GqLG~~~~~~~~~~~~~p~~~--~~~~v~~Ia~G~~hs~alt~~G~v~~wG~n~ 285 (473)
T 3of7_A 226 FAWGNGQQNQLGRKVMERFRLKTLDPRPF--GLRHVKYIASGENHCFALTKDNKLVSWGLNQ 285 (473)
T ss_dssp EEEECCTTSTTSSCCCGGGTTTTCSCEEC--SCCSEEEEEECSSEEEEEETTSCEEEEEECT
T ss_pred EEEeCCCCCCCCCCccccccccccCceec--CCcceEEEecCCCeEEEEecCCCEEEeCCCC
Confidence 999754321 0 000011 1146778887788888888999999997653
No 360
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=63.12 E-value=1.9e+02 Score=32.26 Aligned_cols=168 Identities=9% Similarity=0.058 Sum_probs=98.2
Q ss_pred CeEEEEECCCC--ceEEEEecC------CccEEEEEEc---------CCEEEEEe-CCCcEEEEEcCCCeeeeEecc---
Q 001042 986 AVANIWDIRAG--RQMHKFLGH------TKWIRSIRMD---------RDTVITGS-DDWTARMWSISRGTCDAVLAC--- 1044 (1178)
Q Consensus 986 g~I~lwD~~~~--~~~~~~~~~------~~~v~~l~~~---------~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~--- 1044 (1178)
-.|.+||++++ +.++++.-. ...+..+.++ ..++..+. ..+.|.++|+.+++.-+....
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~ 202 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFK 202 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGS
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCc
Confidence 36888999998 888776532 3467788876 22444443 467799999998876554421
Q ss_pred -----------C----CCcEEEEEEecC----CCEEEEEeCCCcEEEEECCC-----C----ceEEEEEecc-cCCc-EE
Q 001042 1045 -----------H----AGPVQCVEYSSS----DRGIITGSSDGLLRFWENDD-----G----GIKCVKNVTI-HSSA-IL 1094 (1178)
Q Consensus 1045 -----------h----~~~I~~l~~spd----g~~L~sgs~Dg~I~iwd~~~-----~----~~~~~~~~~~-h~~~-i~ 1094 (1178)
. ...+..++++|+ ++.|.-....+. ++|.+.+ . ..+.+.. .+ .+.. ..
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L~~~~~~~~v~~~G~-kg~~s~~~~~ 280 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKELKQKGGKLNPELLGN-RGKYNDAIAL 280 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHHSSTTCCCCCEEEEE-CCTTCCEEEE
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHhhCcchhhceEEeee-cCCCCCcceE
Confidence 0 136788899988 677766655442 3444321 1 1111111 12 1222 24
Q ss_pred EEe-cCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCccceeEeeccCCCcccEEEEEEcCCCCEEEEEe
Q 001042 1095 SIN-AGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGG 1164 (1178)
Q Consensus 1095 ~is-~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s 1164 (1178)
++. .+|.+.++--..+.|..|+..+... .......+..-. .-....++.+..+|.+.+.++
T Consensus 281 ~~D~~~G~ly~~~~~~~aI~~w~~~~~~~--------~~~n~~~l~~d~-~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 281 AYDPKTKVIFFAEANTKQVSCWNTQKMPL--------RMKNTDVVYTSS-RFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp EECTTTCEEEEEESSSSEEEEEETTSCSB--------CGGGEEEEEECT-TCCSEEEEEECTTSCEEEEEC
T ss_pred EEeCCCCeEEEEeccCCeEEEEeCCCCcc--------ccCceEEEEECC-CccccCeEEECCCCeEEEEEC
Confidence 454 5677777777888999999863110 001112222222 344678888888888766654
No 361
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=58.18 E-value=2.4e+02 Score=31.68 Aligned_cols=239 Identities=12% Similarity=0.045 Sum_probs=127.5
Q ss_pred CceEEEEEeCCCeEEEEeCCCeEEEEeCCCC-e------------EEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 001042 924 AQVSCVRMLSGERVLTASHDGTVKMWDVRTD-T------------CVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANI 990 (1178)
Q Consensus 924 ~~V~~l~~~~~~~l~sgs~dg~V~iwd~~~~-~------------~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~l 990 (1178)
..|..++.. ..+.+.-..||.|..|-.... + ....+ .....|..++.. ..+.++-+.||.|+.
T Consensus 59 ~~i~~va~G-~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v-~l~~~i~~va~G--~~hs~alt~~G~v~~ 134 (413)
T 1a12_A 59 EDVVQAEAG-GMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKV-ELQEKVVQVSAG--DSHTAALTDDGRVFL 134 (413)
T ss_dssp SCEEEEEEC-SSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEEC-CCCSCEEEEEEC--SSEEEEEETTSCEEE
T ss_pred CCeEEEEeC-CCeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEe-cCCCcEEEEecC--CCeEEEEcCCCcEEE
Confidence 456666543 445556678999999965431 0 00111 113356666553 334555678889999
Q ss_pred EEC--CC-Cc----------eEEEEecCCccEEEEEEcCCEEEEEeCCCcEEEEEcCCC-ee------------------
Q 001042 991 WDI--RA-GR----------QMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRG-TC------------------ 1038 (1178)
Q Consensus 991 wD~--~~-~~----------~~~~~~~~~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~-~~------------------ 1038 (1178)
|-. .. ++ ...........|..++......+.-..||.|+.|-.... ++
T Consensus 135 wG~~~n~~GqlG~~~~~~~~~~P~~v~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~ 214 (413)
T 1a12_A 135 WGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLER 214 (413)
T ss_dssp EECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHH
T ss_pred eeCCcCCCCccCcCCccccccCCEEecCCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccc
Confidence 874 11 11 001111234567888887778888889999999975431 10
Q ss_pred ---eeEecc------CCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCC---------ceEEEEEeccc---CCcEEEEe
Q 001042 1039 ---DAVLAC------HAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDG---------GIKCVKNVTIH---SSAILSIN 1097 (1178)
Q Consensus 1039 ---~~~~~~------h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~---------~~~~~~~~~~h---~~~i~~is 1097 (1178)
...... ....|..++... ...++-..||.|..|-.... .......+..- ...|..++
T Consensus 215 ~~~P~~v~~~~~g~~~~~~i~~ia~G~--~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia 292 (413)
T 1a12_A 215 LLVPKCVMLKSRGSRGHVRFQDAFCGA--YFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFS 292 (413)
T ss_dssp HHSCEECCCBCSSCCSBCCEEEEEEET--TEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEE
T ss_pred cccCceEeeccccccCCccEEEEEeCC--CEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEe
Confidence 000110 123466666543 34444457999999976531 01111122211 13478888
Q ss_pred cCCCEEEEEeCCCcEEEEEcCCCccccccCCCCCcc-ceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001042 1098 AGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMS-GWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEAT 1175 (1178)
Q Consensus 1098 ~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~-~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv~ 1175 (1178)
......++-..||.|..|-....-.. +.|.... ...+.. ... ...|..|+...+ ..+.-..||.|..|-..
T Consensus 293 ~G~~hs~al~~~G~v~~wG~n~~GqL---G~g~~~~~~~~P~~-v~~-l~~v~~v~~G~~--hs~alt~~G~v~~wG~n 364 (413)
T 1a12_A 293 GGQHHTVCMDSEGKAYSLGRAEYGRL---GLGEGAEEKSIPTL-ISR-LPAVSSVACGAS--VGYAVTKDGRVFAWGMG 364 (413)
T ss_dssp ECSSEEEEEETTSCEEEEECCGGGTT---CSCTTCCCEEEEEE-CCS-SSSEEEEEECSS--EEEEEETTSCEEEEECC
T ss_pred cccceEEEEeCCCCEEEeeCCCCCcc---CCCCCCccccCCEE-ecc-cCceeEEEECcc--eEEEEeCCCCEEEecCC
Confidence 77777777789999999976532111 1111110 111111 111 125666665432 33444578888888643
No 362
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=57.31 E-value=18 Score=32.04 Aligned_cols=50 Identities=22% Similarity=0.286 Sum_probs=35.8
Q ss_pred HHHHHHHhhhhccCChHHHHHHHHHHHHHHhhhcCCchhHH-HHHHhhHHHHHHH
Q 001042 624 ELLKTAIGRATSRNDVSTIRDALEVSAEMFKKDANNVSDYV-QRHLISLSIWEEL 677 (1178)
Q Consensus 624 ~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~y~-q~~l~~~p~~~~~ 677 (1178)
.+|..||+-|...+|+.+..+.||....=|-. ..++..|+ |+ ++|+.+.|
T Consensus 46 ~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~-~~~iY~~~lqE---lkPtl~EL 96 (109)
T 1v54_E 46 KIIDAALRACRRLNDFASAVRILEVVKDKAGP-HKEIYPYVIQE---LRPTLNEL 96 (109)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-CTTHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC-chhhHHHHHHH---HhhHHHHh
Confidence 57899999999999999999999855444432 24556665 43 24877655
No 363
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=55.79 E-value=2.4e+02 Score=31.02 Aligned_cols=79 Identities=14% Similarity=0.071 Sum_probs=48.9
Q ss_pred EEecCCCCceEEEEEeCCCeEEEEeC-CCeEEEEeCCCCeEE--EEe----cCCCCCEEEEEEeCC---CCEEEEE---e
Q 001042 917 EELKGHDAQVSCVRMLSGERVLTASH-DGTVKMWDVRTDTCV--ATV----GRCSSAVLCMEYDDS---TGILAAG---G 983 (1178)
Q Consensus 917 ~~l~~h~~~V~~l~~~~~~~l~sgs~-dg~V~iwd~~~~~~~--~~~----~~~~~~I~~l~~sp~---~~~l~sg---s 983 (1178)
..+...-...+.++|.++..++++.. .|.|++++..+++.. ..+ .........|+++|+ +..|.+. .
T Consensus 25 ~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~ 104 (347)
T 3das_A 25 RTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA 104 (347)
T ss_dssp EEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS
T ss_pred EEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecC
Confidence 34444455678999985444555555 899999987666542 222 123456899999995 4445443 2
Q ss_pred CCCeEEEEECCC
Q 001042 984 RDAVANIWDIRA 995 (1178)
Q Consensus 984 ~dg~I~lwD~~~ 995 (1178)
.++.|.-|....
T Consensus 105 ~~~~v~R~~~~~ 116 (347)
T 3das_A 105 SDNRIVRMLYDE 116 (347)
T ss_dssp SSEEEEEEEBCT
T ss_pred CCCEEEEEEeCC
Confidence 445666676654
No 364
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=55.65 E-value=2.1e+02 Score=30.30 Aligned_cols=178 Identities=7% Similarity=-0.053 Sum_probs=101.1
Q ss_pred CCEEEEEeCCCcEEE---EcCCCCCceeeEeecccccceEEE-ec--CCCEEEEEeCCCcEEEEECCCCc------EEEE
Q 001042 851 AGFFISGSTDCLVKI---WDPSLRGSELRATLKGHTRTVRAI-NS--DRGKVVSGSDDQSVLVWDKQTSQ------LLEE 918 (1178)
Q Consensus 851 ~~~Lasgs~Dg~I~i---Wd~~~~~~~~~~~l~~h~~~V~~~-s~--d~~~l~sgs~dg~I~iwd~~t~~------~~~~ 918 (1178)
...|+.-+.+|.++- |++......-+ +. ....|.++ .. +...++..+.+|.++...+..-. ....
T Consensus 35 ~~~ll~fT~~G~v~~~~~~~lp~~~~~~l--l~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~ 111 (276)
T 3no0_A 35 TEGLFLVSNRGRVYWIAGSQALQGSKVSL--KS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIK 111 (276)
T ss_dssp TSCEEEEETTSEEEEECSHHHHTSEECCC--SS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSC
T ss_pred CCEEEEEcCCCeEEEEEhhhCccCccccc--CC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEe
Confidence 445666666776654 33321111111 33 23445543 22 46789999999999998865432 1122
Q ss_pred ecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEeCCC---------CeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeE
Q 001042 919 LKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRT---------DTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVA 988 (1178)
Q Consensus 919 l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd~~~---------~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I 988 (1178)
++. .+.+..+... ..+.++..+.+|.+..++... |.....+. ....|.++...+++..++..+..|.+
T Consensus 112 lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~~~~ll~~T~~G~~ 189 (276)
T 3no0_A 112 LTE-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDETSGLRIWNGEPYLLVITAKGRV 189 (276)
T ss_dssp CCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEESSCSEEEEEETTSCE
T ss_pred cCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCEEEEEEEeCCCCEEEEEeCCCcE
Confidence 332 3344444444 566788899999988876521 22221222 24567776666667788899999999
Q ss_pred EEEECCC-------CceEEEEecCCccEEEEEE-c-CCEEEEEeCCCcEEE--EEcC
Q 001042 989 NIWDIRA-------GRQMHKFLGHTKWIRSIRM-D-RDTVITGSDDWTARM--WSIS 1034 (1178)
Q Consensus 989 ~lwD~~~-------~~~~~~~~~~~~~v~~l~~-~-~~~l~sgs~dg~I~i--wd~~ 1034 (1178)
+...+.. ++-+..+ ...+.+..+.. + .+.++..+.+|.+.. ++..
T Consensus 190 kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 190 KKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred EEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 9888643 2223333 22334444332 3 236677777777766 6653
No 365
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=52.77 E-value=2.9e+02 Score=31.03 Aligned_cols=229 Identities=7% Similarity=-0.006 Sum_probs=129.4
Q ss_pred ceEEEecCCCEEEEEeCCCcEEEEECCC-Cc------------EEEEecCCCCceEEEEEeCCCeEEEEeCCCeEEEEeC
Q 001042 885 TVRAINSDRGKVVSGSDDQSVLVWDKQT-SQ------------LLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDV 951 (1178)
Q Consensus 885 ~V~~~s~d~~~l~sgs~dg~I~iwd~~t-~~------------~~~~l~~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~ 951 (1178)
.|..++..+.+.+.-..||.|..|-... ++ ....+. ....|..++.. ..+.+.-..||.|..|-.
T Consensus 76 ~v~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~-~~~~i~~va~G-~~hs~al~~~G~v~~wG~ 153 (423)
T 3mvd_K 76 DAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLID-LPGKALCISAG-DSHSACLLEDGRVFAWGS 153 (423)
T ss_dssp SEEEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECC-CSSCEEEEEEC-SSEEEEEETTSCEEEEEC
T ss_pred CceEEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEc-CCCCEEEEEcC-cCeEEEEeCCCeEEEEeC
Confidence 4677888888888889999999996533 11 011111 22356555543 445556678999999975
Q ss_pred --CC-CeE---------EEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-----------------------
Q 001042 952 --RT-DTC---------VATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAG----------------------- 996 (1178)
Q Consensus 952 --~~-~~~---------~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~----------------------- 996 (1178)
.. ++. ..........|..++.. ..+.++-..+|.|+.|-....
T Consensus 154 ~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~ 231 (423)
T 3mvd_K 154 FRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASG--ADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLL 231 (423)
T ss_dssp EECSSSEEESBTTBCEEEEEESSTTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTS
T ss_pred CCCCCCCcCcCCCCCCceeeEecCCCcEEEEecC--CCeEEEEecCCeEEEeeCCcCCccCCCccccccccccccccccc
Confidence 22 221 11111223456666654 344556678899999964321
Q ss_pred ceEEEEecCCccEEEEEEcCCEEEEE-eCCCcEEEEEcCCCe-----------eeeEeccCCCcEEEEEEecCCCEEEEE
Q 001042 997 RQMHKFLGHTKWIRSIRMDRDTVITG-SDDWTARMWSISRGT-----------CDAVLACHAGPVQCVEYSSSDRGIITG 1064 (1178)
Q Consensus 997 ~~~~~~~~~~~~v~~l~~~~~~l~sg-s~dg~I~iwd~~~~~-----------~~~~~~~h~~~I~~l~~spdg~~L~sg 1064 (1178)
.+..........|..++......+.. ..+|.|+.|-..... ...........|..++.. ....+.-
T Consensus 232 ~p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G--~~ht~al 309 (423)
T 3mvd_K 232 RPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGG--QHHTVIL 309 (423)
T ss_dssp SCEEECCTTCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEEC--SSEEEEE
T ss_pred CCeEEeecCCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEcc--cCeEEEE
Confidence 11111112234566676655544444 689999999754311 011111112346555543 3445555
Q ss_pred eCCCcEEEEECCCC----------ceEEEEEecccCCcEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 001042 1065 SSDGLLRFWENDDG----------GIKCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRPQ 1119 (1178)
Q Consensus 1065 s~Dg~I~iwd~~~~----------~~~~~~~~~~h~~~i~~is~dg~~Lasgs~Dg~I~iwd~~~ 1119 (1178)
..||.|..|-.... .......+..-...|..++.....-++-..||.|+.|=...
T Consensus 310 t~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~hs~alt~~G~v~~wG~n~ 374 (423)
T 3mvd_K 310 TTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEVCSYAVTIDGKLYSWGSGV 374 (423)
T ss_dssp ETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETTEEEEEETTSCEEEEECCT
T ss_pred eCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCCCeEEEEcCCCCEEEECCCC
Confidence 67999999975421 01222233333336888877666666678999999997654
No 366
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=52.64 E-value=3.5e+02 Score=31.95 Aligned_cols=235 Identities=9% Similarity=0.026 Sum_probs=127.5
Q ss_pred EEEEeCCCeEEEEeCCCCeEEEEecCCC-------------------------CCE--EEEEEeC---CCCEEEEEe-CC
Q 001042 937 VLTASHDGTVKMWDVRTDTCVATVGRCS-------------------------SAV--LCMEYDD---STGILAAGG-RD 985 (1178)
Q Consensus 937 l~sgs~dg~V~iwd~~~~~~~~~~~~~~-------------------------~~I--~~l~~sp---~~~~l~sgs-~d 985 (1178)
+.+|+..|.|+++-+.+++.+..+.-.. +.. ..+++.. ||++++.-. .+
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 7789999999999999998887763110 001 1233332 678888877 46
Q ss_pred CeEEEEECCCCceEEEEec-CCccEEEEEEc--C--CEEEEEeC-------CCcEE---------E---EEcCCCeeeeE
Q 001042 986 AVANIWDIRAGRQMHKFLG-HTKWIRSIRMD--R--DTVITGSD-------DWTAR---------M---WSISRGTCDAV 1041 (1178)
Q Consensus 986 g~I~lwD~~~~~~~~~~~~-~~~~v~~l~~~--~--~~l~sgs~-------dg~I~---------i---wd~~~~~~~~~ 1041 (1178)
..|...++...++-+.+.- ....+..+.+. + .+++++++ ||... + .|..+.+....
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~Q 232 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAFQ 232 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEEE
T ss_pred cceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEEE
Confidence 7788888888877555432 34566777763 2 36776664 33211 1 12222211111
Q ss_pred eccCCCcEEEEEEecCCCEEEEEeCCC---------------cEEEEECC-------CCceEE-----EEEecccC----
Q 001042 1042 LACHAGPVQCVEYSSSDRGIITGSSDG---------------LLRFWEND-------DGGIKC-----VKNVTIHS---- 1090 (1178)
Q Consensus 1042 ~~~h~~~I~~l~~spdg~~L~sgs~Dg---------------~I~iwd~~-------~~~~~~-----~~~~~~h~---- 1090 (1178)
+.- .+....+..+++|++.++.+.+. .+.++++. .|+... +..+.+..
T Consensus 233 v~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~~ 311 (638)
T 3sbq_A 233 VIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDGK 311 (638)
T ss_dssp EEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTTB
T ss_pred EEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcccccccc
Confidence 110 12233445567777777665331 25555532 111110 11111111
Q ss_pred -Cc------------EEEEecCCCEEEEEeC-CCcEEEEEcCCCccccccCCCC-CccceeEeeccCCCcccEEEEEEcC
Q 001042 1091 -SA------------ILSINAGDHWLGIGAA-DNSMSLFHRPQERLGGFSGTGS-KMSGWQLYRTPQKTVAVVRCIASDL 1155 (1178)
Q Consensus 1091 -~~------------i~~is~dg~~Lasgs~-Dg~I~iwd~~~~~~~~~~~~g~-~~~~~~~~~~~~~h~~~V~~lafsp 1155 (1178)
.. -..++|||+++++++. +.++.++|...... .+. .+- .... ....... -.......+|.+
T Consensus 312 ~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~-~~~-~k~~~~~~-~~~ae~e-~GlGPlHt~Fd~ 387 (638)
T 3sbq_A 312 DSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPD-LFA-GKLADPRD-VIVGEPE-LGLGPLHTTFDG 387 (638)
T ss_dssp CCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHH-HHT-TCCSCGGG-GEEECCB-CCSCEEEEEECS
T ss_pred CCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhh-hhh-ccccCccc-ceEeecc-CCCcccEEEECC
Confidence 11 1445799999887664 78899999873210 000 000 0000 1112222 123466789999
Q ss_pred CCCEEEEEeCCCcEEEEECCC
Q 001042 1156 ERKRICSGGRNGLLRLWEATI 1176 (1178)
Q Consensus 1156 dg~~Las~s~Dg~V~IWdv~t 1176 (1178)
+|....|.-.|..|.-|++.+
T Consensus 388 ~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 388 RGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp SSEEEEEETTTTEEEEEEHHH
T ss_pred CCceEeeeeecceEEEEeccH
Confidence 996555666899999999864
No 367
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=51.11 E-value=2.6e+02 Score=30.10 Aligned_cols=183 Identities=13% Similarity=0.131 Sum_probs=107.9
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCcE-------EE--EecCCCCceEEEEEeCCCeEEEEeCCCeEEEEeCC---CC----
Q 001042 891 SDRGKVVSGSDDQSVLVWDKQTSQL-------LE--ELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVR---TD---- 954 (1178)
Q Consensus 891 ~d~~~l~sgs~dg~I~iwd~~t~~~-------~~--~l~~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~---~~---- 954 (1178)
++...+++.+.+|.|+--.+.+-+. +. .++....-+..+..+..+.++..+..|.++-.... ..
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~ 85 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS 85 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Confidence 4567788999999999876643221 11 22322333333333467778888899987766543 11
Q ss_pred --eEE---EEecCCCCCEEEEEEeC---CCCEEEEEeCCCeEEEEECCCC-------ceEEEEecCCccEEEEEE-c-CC
Q 001042 955 --TCV---ATVGRCSSAVLCMEYDD---STGILAAGGRDAVANIWDIRAG-------RQMHKFLGHTKWIRSIRM-D-RD 1017 (1178)
Q Consensus 955 --~~~---~~~~~~~~~I~~l~~sp---~~~~l~sgs~dg~I~lwD~~~~-------~~~~~~~~~~~~v~~l~~-~-~~ 1017 (1178)
..+ -.+. ....|.++...+ ++..++..+.+|.++...+..- .....+.. .+.+..+.. + .+
T Consensus 86 ~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~ 163 (312)
T 1suu_A 86 KGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDE 163 (312)
T ss_dssp --CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTC
T ss_pred CCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCC
Confidence 110 0111 234455554433 4677888999999999887432 22222333 344444443 3 45
Q ss_pred EEEEEeCCCcEEEEEcCC---------CeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 001042 1018 TVITGSDDWTARMWSISR---------GTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWEND 1076 (1178)
Q Consensus 1018 ~l~sgs~dg~I~iwd~~~---------~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~ 1076 (1178)
.++..+.+|.+..+.... |.....+.. ...|.++....++..+++.+..|..+..++.
T Consensus 164 ~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~ 230 (312)
T 1suu_A 164 KVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLNMS 230 (312)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEEGG
T ss_pred EEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEEHH
Confidence 788999999998888643 122222332 3456666665566778888899999888874
No 368
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=48.11 E-value=3.3e+02 Score=30.35 Aligned_cols=131 Identities=7% Similarity=0.100 Sum_probs=78.0
Q ss_pred CcEEEEECCCC--cEEEEecCC------CCceEEEEEe-C-------CCeEEEE-eCCCeEEEEeCCCCeEEEEecC---
Q 001042 903 QSVLVWDKQTS--QLLEELKGH------DAQVSCVRML-S-------GERVLTA-SHDGTVKMWDVRTDTCVATVGR--- 962 (1178)
Q Consensus 903 g~I~iwd~~t~--~~~~~l~~h------~~~V~~l~~~-~-------~~~l~sg-s~dg~V~iwd~~~~~~~~~~~~--- 962 (1178)
-+|.+||+.++ +.++++.-. ...+..+.+. . +.++..+ +..+.|.++|+.+++..+....
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~ 202 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFK 202 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGS
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCc
Confidence 46888999998 888776532 3456677765 1 2333333 3578899999999887665421
Q ss_pred -C--------------CCCEEEEEEeCC----CCEEEEEeCCCeEEEEECC-----CC---ceEEEEecCC---ccEEEE
Q 001042 963 -C--------------SSAVLCMEYDDS----TGILAAGGRDAVANIWDIR-----AG---RQMHKFLGHT---KWIRSI 1012 (1178)
Q Consensus 963 -~--------------~~~I~~l~~sp~----~~~l~sgs~dg~I~lwD~~-----~~---~~~~~~~~~~---~~v~~l 1012 (1178)
. ...+..|+.+|+ ++.|.-....+. ++|.+. .. ..++.+ +.. ..-..+
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~~~~ 280 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKELKQKGGKLNPELL-GNRGKYNDAIAL 280 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHHSSTTCCCCCEEE-EECCTTCCEEEE
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHhhCcchhhceEEe-eecCCCCCcceE
Confidence 0 246788999987 677776655442 333332 11 122222 222 233345
Q ss_pred EEc---CCEEEEEeCCCcEEEEEcCC
Q 001042 1013 RMD---RDTVITGSDDWTARMWSISR 1035 (1178)
Q Consensus 1013 ~~~---~~~l~sgs~dg~I~iwd~~~ 1035 (1178)
+.+ +..+++--....|..|+..+
T Consensus 281 ~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 281 AYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp EECTTTCEEEEEESSSSEEEEEETTS
T ss_pred EEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 554 33555556778899999765
No 369
>3v42_A Folliculin; tumor suppressor, protein binding; 2.00A {Homo sapiens}
Probab=47.02 E-value=14 Score=38.00 Aligned_cols=96 Identities=18% Similarity=0.233 Sum_probs=65.9
Q ss_pred cchHHHhccCChhhHHHHHHHHhccccEEEEeCCcchHHHHHHHHHHcccccCCCceeecccchhhhhhccCCcceEEee
Q 001042 205 ISFQPLVQLLDVDNLITLFTAVLLERRILLRSNKYSLLTLVSEAICHLIYPFRWQHVYIPLLFFSGVDYIDAPTPYMMGL 284 (1178)
Q Consensus 205 ~~~~~l~~~l~~~~~l~l~~~~L~E~~il~~s~~~~~ls~~~~al~~ll~Pf~w~~~~IP~lP~~l~~~l~aP~P~iiGv 284 (1178)
.++..+.+-||.+++-.+..++|...+||+.|.+......++.+|..||= -.-. -+. ..-.+|.++=.==|+|+
T Consensus 7 ~SLr~l~~vlG~~~F~~l~~~vl~GnQiIVrg~~~~~~~s~~~~L~~lLP-~~c~----~l~-~~s~~Y~~~~~cnilgl 80 (226)
T 3v42_A 7 KSLRHMRQVLGAPSFRMLAWHVLMGNQVIWKSRDVDLVQSAFEVLRTMLP-VGCV----RII-PYSSQYEEAYRCNFLGL 80 (226)
T ss_dssp CCHHHHHHHHCHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHGGGSC-GGGC----CEE-EEESSCCCTTTCSEEEE
T ss_pred HHHHHHHHHHChHHHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHhCC-HHHH----hcc-ccchhhcchhheeeecC
Confidence 46888999999999999999999999999999999999999888887752 1110 011 11123444444447777
Q ss_pred cCCCCccc--cCCCcEEEEEcCCC
Q 001042 285 HSGVDTSN--LAMDGVVVVDLEYN 306 (1178)
Q Consensus 285 ~~~~~~~~--~~~~~~~~vdlD~~ 306 (1178)
..+..... ...+.++++|+|..
T Consensus 81 s~~v~iP~~v~~s~~~~i~~i~~~ 104 (226)
T 3v42_A 81 SPHVQIPPHVLSSEFAVIVEVHAA 104 (226)
T ss_dssp CTTCCCCHHHHTCTTEEEEEEEEC
T ss_pred CCCcccCcccccccceEEEeehhh
Confidence 76654432 13455677777543
No 370
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=46.66 E-value=3.1e+02 Score=29.57 Aligned_cols=229 Identities=12% Similarity=0.066 Sum_probs=125.3
Q ss_pred CCCeEEEEeCCCeEEEEeCCCCe-------EEEEec-CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceE-----
Q 001042 933 SGERVLTASHDGTVKMWDVRTDT-------CVATVG-RCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQM----- 999 (1178)
Q Consensus 933 ~~~~l~sgs~dg~V~iwd~~~~~-------~~~~~~-~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~----- 999 (1178)
+...+++.+.+|.|+--.+..-+ -+..+. ...+.+..+........++..+..|.++-+....-...
T Consensus 7 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~ 86 (312)
T 1suu_A 7 KENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASK 86 (312)
T ss_dssp -CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC------
T ss_pred CCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCC
Confidence 45568888999999887654221 111111 22345555555556667888888998777665321111
Q ss_pred -------EEEecCCccEEEE-EE----cCCEEEEEeCCCcEEEEEcCC-------CeeeeEeccCCCcEEEEEEecCCCE
Q 001042 1000 -------HKFLGHTKWIRSI-RM----DRDTVITGSDDWTARMWSISR-------GTCDAVLACHAGPVQCVEYSSSDRG 1060 (1178)
Q Consensus 1000 -------~~~~~~~~~v~~l-~~----~~~~l~sgs~dg~I~iwd~~~-------~~~~~~~~~h~~~I~~l~~spdg~~ 1060 (1178)
..+. ....|.++ .. +.+.++..+.+|.++...+.. |.....+.. .+.+..+....++..
T Consensus 87 G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~~ 164 (312)
T 1suu_A 87 GQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDEK 164 (312)
T ss_dssp -CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTCE
T ss_pred CcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCCE
Confidence 0121 12334444 33 245789999999999888743 222333333 456666666555667
Q ss_pred EEEEeCCCcEEEEECCC----Cc-e--EEEEEecccCCcEEEEe--cCCCEEEEEeCCCcEEEEEcCCCccccccCCCCC
Q 001042 1061 IITGSSDGLLRFWENDD----GG-I--KCVKNVTIHSSAILSIN--AGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSK 1131 (1178)
Q Consensus 1061 L~sgs~Dg~I~iwd~~~----~~-~--~~~~~~~~h~~~i~~is--~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~ 1131 (1178)
++..+.+|.+..+.... +. . .....+. ....+.++. .++..+++.+..|.....++..-+.......|.
T Consensus 165 i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~~~R~~kGv- 242 (312)
T 1suu_A 165 VICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATGY- 242 (312)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBCCTTCCCE-
T ss_pred EEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEEHHHhcccCCCCCCE-
Confidence 88888999998888753 10 0 1111222 233444442 356678888999999999886543322222221
Q ss_pred ccceeEeeccCCCcccEEE-EEEcCCCCEEEEEeCCCcEE
Q 001042 1132 MSGWQLYRTPQKTVAVVRC-IASDLERKRICSGGRNGLLR 1170 (1178)
Q Consensus 1132 ~~~~~~~~~~~~h~~~V~~-lafspdg~~Las~s~Dg~V~ 1170 (1178)
..........+.+.+ ..+..+ .-+...+..|.+.
T Consensus 243 ----~~~~~~k~~~~~lv~~~~~~~~-~~l~~~t~~g~~~ 277 (312)
T 1suu_A 243 ----TSYKKSDKKAGSVVDAIAVSED-DEILLVSKRSKAL 277 (312)
T ss_dssp ----ECSCTTCTTTCSEEEEEEECTT-CEEEEEETTCEEE
T ss_pred ----EeeEccCCCCCeEEEEEEeCCC-CEEEEEeCCCeEE
Confidence 222222122333433 345444 4444555666443
No 371
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=44.84 E-value=4e+02 Score=30.43 Aligned_cols=230 Identities=11% Similarity=0.081 Sum_probs=128.6
Q ss_pred cceEEEecCCCEEEEEeCCCcEEEEECCCC-cE---------------------------------EEEecC-------C
Q 001042 884 RTVRAINSDRGKVVSGSDDQSVLVWDKQTS-QL---------------------------------LEELKG-------H 922 (1178)
Q Consensus 884 ~~V~~~s~d~~~l~sgs~dg~I~iwd~~t~-~~---------------------------------~~~l~~-------h 922 (1178)
..|..++..+...+.-..||.|..|-.... ++ ...+.. .
T Consensus 67 ~~i~~va~G~~Ht~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~ 146 (473)
T 3of7_A 67 AKIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAE 146 (473)
T ss_dssp TCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHT
T ss_pred CCEEEEEeCCCeEEEEecCCeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccC
Confidence 467777777778777888899999954321 00 001111 1
Q ss_pred CCceEEEEEeCCCeEEEEeCCCeEEEEeCC---CCeE------------EEEecC-CCCCEEEEEEeCCCCEEEEEeCCC
Q 001042 923 DAQVSCVRMLSGERVLTASHDGTVKMWDVR---TDTC------------VATVGR-CSSAVLCMEYDDSTGILAAGGRDA 986 (1178)
Q Consensus 923 ~~~V~~l~~~~~~~l~sgs~dg~V~iwd~~---~~~~------------~~~~~~-~~~~I~~l~~sp~~~~l~sgs~dg 986 (1178)
...|..++.. ....++-..||.|..|-.. .++. ...+.. ....|..++.. ....++-+.+|
T Consensus 147 ~~~i~~va~G-~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G--~~hs~alt~~G 223 (473)
T 3of7_A 147 GHKVVQLAAT-DNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPG--KDHILFLDEEG 223 (473)
T ss_dssp TCCEEEEEEC-SSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEEC--SSEEEEEETTS
T ss_pred CCcEEEEEcc-CCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEec--CCeEEEEeCCC
Confidence 2455555543 4445556788999999751 1110 111111 12346666654 34555667889
Q ss_pred eEEEEECCCCceEE-------------EEecCCccEEEEEEcCCEEEEEeCCCcEEEEEcCCC-e-----------e---
Q 001042 987 VANIWDIRAGRQMH-------------KFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRG-T-----------C--- 1038 (1178)
Q Consensus 987 ~I~lwD~~~~~~~~-------------~~~~~~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~-~-----------~--- 1038 (1178)
.|+.|-....-.+. ........|..|+......++-..+|.|+.|-.... + .
T Consensus 224 ~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~ 303 (473)
T 3of7_A 224 MVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTK 303 (473)
T ss_dssp CEEEEECCTTSTTSSCCCGGGTTTTCSCEECSCCSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEE
T ss_pred eEEEEeCCCCCCCCCCccccccccccCceecCCcceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeec
Confidence 99999654311100 000111467888887777788888999999965431 1 1
Q ss_pred eeEecc-CCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCC-c-------------------eE---EEEEecccCCcEE
Q 001042 1039 DAVLAC-HAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDG-G-------------------IK---CVKNVTIHSSAIL 1094 (1178)
Q Consensus 1039 ~~~~~~-h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~-~-------------------~~---~~~~~~~h~~~i~ 1094 (1178)
...+.. ....|..++.. ...-+.-..||.|..|-.... + .. ....+. ....|.
T Consensus 304 P~~v~~~~~~~i~~ia~G--~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~-~~~~v~ 380 (473)
T 3of7_A 304 PKRLALPDNVVIRSIAAG--EHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLN-NVPKFK 380 (473)
T ss_dssp EEECCCCTTCCEEEEEEC--SSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECC-SSCCEE
T ss_pred cccccccCCccEEEEEeC--CCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccC-CCCceE
Confidence 111111 12346555543 334444467888888875321 0 01 111111 112678
Q ss_pred EEecCCCEEEEEeCCCcEEEEEcCC
Q 001042 1095 SINAGDHWLGIGAADNSMSLFHRPQ 1119 (1178)
Q Consensus 1095 ~is~dg~~Lasgs~Dg~I~iwd~~~ 1119 (1178)
.++......++-+.||.|..|=...
T Consensus 381 ~Ia~G~~hs~al~~~G~vy~wG~n~ 405 (473)
T 3of7_A 381 SVAAGSHHSVAVAQNGIAYSWGFGE 405 (473)
T ss_dssp EEEECSSEEEEEETTSCEEEEECCT
T ss_pred EEEeCCCeEEEEeCCCcEEEeeCCC
Confidence 8887777777778999999997653
No 372
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=43.64 E-value=85 Score=40.09 Aligned_cols=32 Identities=6% Similarity=-0.044 Sum_probs=28.8
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001042 1146 AVVRCIASDLERKRICSGGRNGLLRLWEATIN 1177 (1178)
Q Consensus 1146 ~~V~~lafspdg~~Las~s~Dg~V~IWdv~tg 1177 (1178)
..+.+++..++..++++-+.|+++|+|++.+|
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~ 267 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTN 267 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTT
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCC
Confidence 35778888899999999999999999999987
No 373
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=43.63 E-value=3.5e+02 Score=29.34 Aligned_cols=234 Identities=10% Similarity=0.083 Sum_probs=123.3
Q ss_pred CCCeEEEEeCCCeEEEEeCCC----CeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC---C------CceE
Q 001042 933 SGERVLTASHDGTVKMWDVRT----DTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIR---A------GRQM 999 (1178)
Q Consensus 933 ~~~~l~sgs~dg~V~iwd~~~----~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~---~------~~~~ 999 (1178)
+...+++.+.+|.|+--.+.. +.....++ ..+.+..+........++..+..|.++-+... . |.++
T Consensus 4 ~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i 82 (323)
T 1wp5_A 4 SEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMK-DTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHI 82 (323)
T ss_dssp CCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCC-TTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEG
T ss_pred CCcEEEEEeCCCEEEEeEHHHhhhcCccccccC-CCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcCh
Confidence 345678888999888765431 11111122 23455555555566677788888887666542 2 2211
Q ss_pred EEE-e-cCCccEEEE-EEc----CCEEEEEeCCCcEEEEEcCC--------CeeeeEeccCCCcEEEEEEecCCCEEEEE
Q 001042 1000 HKF-L-GHTKWIRSI-RMD----RDTVITGSDDWTARMWSISR--------GTCDAVLACHAGPVQCVEYSSSDRGIITG 1064 (1178)
Q Consensus 1000 ~~~-~-~~~~~v~~l-~~~----~~~l~sgs~dg~I~iwd~~~--------~~~~~~~~~h~~~I~~l~~spdg~~L~sg 1064 (1178)
..+ . .....|.++ ..+ +.+++..+.+|.++-..+.. |.....+.. .+.+..+....+...++..
T Consensus 83 ~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~~~~~~i~l~ 161 (323)
T 1wp5_A 83 ANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLTDGMNELFLV 161 (323)
T ss_dssp GGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEECSCSEEEEE
T ss_pred hhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEeCCCCEEEEE
Confidence 111 1 122345544 333 34799999999999988742 222222332 2556666555556678888
Q ss_pred eCCCcEEEEECCCC----c-eEEEEEecc-cCCcEEEE--ecCCC-EEEEEeCCCcEEEEEcCCCccccccCCCCCccce
Q 001042 1065 SSDGLLRFWENDDG----G-IKCVKNVTI-HSSAILSI--NAGDH-WLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGW 1135 (1178)
Q Consensus 1065 s~Dg~I~iwd~~~~----~-~~~~~~~~~-h~~~i~~i--s~dg~-~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~ 1135 (1178)
+.+|.+..++...- . -.-+..+.- ....|.++ -.++. .+.+.+..|..+..++..-......+.| .
T Consensus 162 T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kG-----v 236 (323)
T 1wp5_A 162 THNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRG-----V 236 (323)
T ss_dssp ETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCC-----E
T ss_pred eCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCC-----E
Confidence 88999888876421 0 011111111 22334444 22344 7888888898888777643222211222 1
Q ss_pred eEeeccCCCcccEEE-EEEcCCCCEEEEEeCCCcEEEEEC
Q 001042 1136 QLYRTPQKTVAVVRC-IASDLERKRICSGGRNGLLRLWEA 1174 (1178)
Q Consensus 1136 ~~~~~~~~h~~~V~~-lafspdg~~Las~s~Dg~V~IWdv 1174 (1178)
............+.. ..+.+ +..++..+.+|.+...++
T Consensus 237 ~~~~~~~~~~~~l~~~~~v~~-~~~i~~it~~g~~ir~~~ 275 (323)
T 1wp5_A 237 VILRELKANPHRISGFVVAQD-SDTIYLQTEKSFIETIKV 275 (323)
T ss_dssp ECSCCCSSSCCCEEEEEEECT-TCEEEEEETTSCEEEEEG
T ss_pred ECeeecCCCCceEEEEEEeCC-CCeEEEEeCCCeEEEEEh
Confidence 222223222324443 33443 444556667777655554
No 374
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=43.31 E-value=1.2e+02 Score=38.51 Aligned_cols=38 Identities=11% Similarity=0.215 Sum_probs=33.8
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEE
Q 001042 965 SAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKF 1002 (1178)
Q Consensus 965 ~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~~~~ 1002 (1178)
..+.+++..++..++++-+.|+++++|++.+++++.+.
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 45778888889999999999999999999999998775
No 375
>2ab9_A Pro-SFTI-1; protein, beta-sheet, random coil, hydrolase inhibitor; NMR {Helianthus annuus}
Probab=41.29 E-value=11 Score=24.10 Aligned_cols=13 Identities=15% Similarity=0.406 Sum_probs=10.8
Q ss_pred CCCCCcccCCCce
Q 001042 53 PPQLSTCVLPAGV 65 (1178)
Q Consensus 53 ~~~v~~fc~P~g~ 65 (1178)
-.++|..|||+|-
T Consensus 18 tksippicfpdgr 30 (31)
T 2ab9_A 18 TKSIPPICFPDGR 30 (31)
T ss_dssp CSSSSCSSSSCCC
T ss_pred cccCCCcccCCCC
Confidence 4789999999983
No 376
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=41.25 E-value=5.9e+02 Score=32.97 Aligned_cols=37 Identities=16% Similarity=0.260 Sum_probs=29.7
Q ss_pred cEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEEe
Q 001042 1048 PVQCVEYSSSDRGIITGSSDGLLRFWENDDGGIKCVKNV 1086 (1178)
Q Consensus 1048 ~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~ 1086 (1178)
.+.+++..++..++++-+.|+++|+|++.++ .++.+.
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~--~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTN--QCVETI 275 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTT--EEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCC--CeEEee
Confidence 3455667778899999999999999999999 555543
No 377
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=40.98 E-value=3.8e+02 Score=29.06 Aligned_cols=233 Identities=10% Similarity=0.048 Sum_probs=124.2
Q ss_pred CCeEEEEeCCCeEEEEeCCC-------CeEEEEec-CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE---CCC------C
Q 001042 934 GERVLTASHDGTVKMWDVRT-------DTCVATVG-RCSSAVLCMEYDDSTGILAAGGRDAVANIWD---IRA------G 996 (1178)
Q Consensus 934 ~~~l~sgs~dg~V~iwd~~~-------~~~~~~~~-~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD---~~~------~ 996 (1178)
...+++.+.+|.|+--.+.+ |+-+..+. ...+.+..+........++.-+..|.++... +.. |
T Consensus 3 E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G 82 (327)
T 3uc1_A 3 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARG 82 (327)
T ss_dssp CEEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCC
T ss_pred ccEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCC
Confidence 34677888888888665321 11111111 1234555555555666677777788766554 332 2
Q ss_pred ceEEEEe--cCCccEEEEE-Ec----CCEEEEEeCCCcEEEEEcCC-------CeeeeEeccCCCcEEEEEEecCCCEEE
Q 001042 997 RQMHKFL--GHTKWIRSIR-MD----RDTVITGSDDWTARMWSISR-------GTCDAVLACHAGPVQCVEYSSSDRGII 1062 (1178)
Q Consensus 997 ~~~~~~~--~~~~~v~~l~-~~----~~~l~sgs~dg~I~iwd~~~-------~~~~~~~~~h~~~I~~l~~spdg~~L~ 1062 (1178)
.++..+- .....|.++. .. ...++..+.+|.++-..+.. |.....+.. .+.+..+........++
T Consensus 83 ~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~il 161 (327)
T 3uc1_A 83 QHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLL 161 (327)
T ss_dssp EEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEE
T ss_pred EEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEE
Confidence 2211111 1233455443 33 45899999999999987654 222223333 34555665555667788
Q ss_pred EEeCCCcEEEEECC--CC----c-eEEEE--EecccCCcEEEE--ecCCCEEEEEeCCCcEEEEEcCCCccccccCCCCC
Q 001042 1063 TGSSDGLLRFWEND--DG----G-IKCVK--NVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSK 1131 (1178)
Q Consensus 1063 sgs~Dg~I~iwd~~--~~----~-~~~~~--~~~~h~~~i~~i--s~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~ 1131 (1178)
..+..|.+..+... .- . ..-+. .+. ....|.++ ..++..++..+..|.++.-.+..-........|
T Consensus 162 l~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G-- 238 (327)
T 3uc1_A 162 LVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKG-- 238 (327)
T ss_dssp EEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCC--
T ss_pred EEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCc--
Confidence 88899999888776 21 0 01111 121 23345554 234568888999999998887643221111112
Q ss_pred ccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001042 1132 MSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEA 1174 (1178)
Q Consensus 1132 ~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv 1174 (1178)
...+ .+..-.+.+..+....+...++..+.+|.+.-+++
T Consensus 239 ---~~~~-~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~ 277 (327)
T 3uc1_A 239 ---VLTV-MYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAA 277 (327)
T ss_dssp ---EESS-CCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEG
T ss_pred ---EEEE-EecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEeh
Confidence 1111 12121223444444444455666677777666654
No 378
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=40.94 E-value=3.8e+02 Score=29.02 Aligned_cols=227 Identities=10% Similarity=0.066 Sum_probs=124.3
Q ss_pred cCCCEEEEEeCCCcEEEEECCCC----cEEEEecCCCCceEEEEEeCCCeEEEEeCCCeEEEEeC---C------CCeEE
Q 001042 891 SDRGKVVSGSDDQSVLVWDKQTS----QLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDV---R------TDTCV 957 (1178)
Q Consensus 891 ~d~~~l~sgs~dg~I~iwd~~t~----~~~~~l~~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~---~------~~~~~ 957 (1178)
++...+++.+.+|.|+--.+.+- .....++....-+..+..+..+.++..+..|.+.-... . .|..+
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i 82 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHI 82 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEG
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcCh
Confidence 45667888999999987654311 11112333333333333446778888888888666543 2 13321
Q ss_pred EEe-c-CCCCCEEEEEEeC---CCCEEEEEeCCCeEEEEECCC--------CceEEEEecCCccEEEEEE-c-CCEEEEE
Q 001042 958 ATV-G-RCSSAVLCMEYDD---STGILAAGGRDAVANIWDIRA--------GRQMHKFLGHTKWIRSIRM-D-RDTVITG 1022 (1178)
Q Consensus 958 ~~~-~-~~~~~I~~l~~sp---~~~~l~sgs~dg~I~lwD~~~--------~~~~~~~~~~~~~v~~l~~-~-~~~l~sg 1022 (1178)
..+ . .....|.++..-+ ++.+++.++.+|.++...+.. |.....+... +.+..+.. + .+.++..
T Consensus 83 ~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~~~i~l~ 161 (323)
T 1wp5_A 83 ANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGMNELFLV 161 (323)
T ss_dssp GGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSCSEEEEE
T ss_pred hhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCCCCEEEEE
Confidence 111 1 1234566554333 256788999999999988742 1111123222 34444333 3 4578889
Q ss_pred eCCCcEEEEEcCC---------CeeeeEeccCCCcEEEEEEecCCC-EEEEEeCCCcEEEEECCCC---c--eEEEEE--
Q 001042 1023 SDDWTARMWSISR---------GTCDAVLACHAGPVQCVEYSSSDR-GIITGSSDGLLRFWENDDG---G--IKCVKN-- 1085 (1178)
Q Consensus 1023 s~dg~I~iwd~~~---------~~~~~~~~~h~~~I~~l~~spdg~-~L~sgs~Dg~I~iwd~~~~---~--~~~~~~-- 1085 (1178)
+.+|.+..++... |.....+. ....|.++...+++. .+++.+..|..+..++..- . -.-+..
T Consensus 162 T~~G~~irf~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~ 240 (323)
T 1wp5_A 162 THNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILR 240 (323)
T ss_dssp ETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSC
T ss_pred eCCCcEEEEEHHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECee
Confidence 9999988887643 11111222 234566665544455 7888888998888776531 0 011121
Q ss_pred -ecccCCcEEEE--ecCCCEEEEEeCCCcEEEEEcCC
Q 001042 1086 -VTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQ 1119 (1178)
Q Consensus 1086 -~~~h~~~i~~i--s~dg~~Lasgs~Dg~I~iwd~~~ 1119 (1178)
+......+..+ ..++..++..+.+|.+.-..+..
T Consensus 241 ~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 241 ELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp CCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred ecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence 21222234432 23345566677778777667654
No 379
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=39.89 E-value=45 Score=31.21 Aligned_cols=50 Identities=22% Similarity=0.285 Sum_probs=35.5
Q ss_pred HHHHHHHhhhhccCChHHHHHHHHHHHHHHhhhcCCchhHH-HHHHhhHHHHHHH
Q 001042 624 ELLKTAIGRATSRNDVSTIRDALEVSAEMFKKDANNVSDYV-QRHLISLSIWEEL 677 (1178)
Q Consensus 624 ~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~y~-q~~l~~~p~~~~~ 677 (1178)
.+|..||+-|...+|+.+....||....=|- ...++..|+ |+ ++|+.+.|
T Consensus 89 ~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~-~~~~iY~y~lqE---lkPtl~EL 139 (152)
T 2y69_E 89 KIIDAALRACRRLNDFASAVRILEVVKDKAG-PHKEIYPYVIQE---LRPTLNEL 139 (152)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCTTHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC-CchhhHHHHHHH---HhhHHHHh
Confidence 5789999999999999999999985444342 224556665 43 24876655
No 380
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=38.29 E-value=4e+02 Score=28.53 Aligned_cols=227 Identities=12% Similarity=0.056 Sum_probs=122.9
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCcEEE---------EecCCCCceEEEEEeCCCeEEEEeCCCeEEEEeC---CC-----
Q 001042 891 SDRGKVVSGSDDQSVLVWDKQTSQLLE---------ELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDV---RT----- 953 (1178)
Q Consensus 891 ~d~~~l~sgs~dg~I~iwd~~t~~~~~---------~l~~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd~---~~----- 953 (1178)
++...+++.+.+|.|+--.+.+-+... .++.+..-+..+..+..+.++..+..|.+.-... ..
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a 80 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA 80 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCC
Confidence 345678889999999877765432211 1222233333333346777888888888665543 22
Q ss_pred -CeEEEEe-c-CCCCCEEEEEEe---CCCCEEEEEeCCCeEEEEECCC-------CceEEEEecCCccEEEEEE-c-CCE
Q 001042 954 -DTCVATV-G-RCSSAVLCMEYD---DSTGILAAGGRDAVANIWDIRA-------GRQMHKFLGHTKWIRSIRM-D-RDT 1018 (1178)
Q Consensus 954 -~~~~~~~-~-~~~~~I~~l~~s---p~~~~l~sgs~dg~I~lwD~~~-------~~~~~~~~~~~~~v~~l~~-~-~~~ 1018 (1178)
|..+..+ . .....|.++..- .++.+++..+.+|.++...+.. +.....+..+ +.+..+.. + .+.
T Consensus 81 ~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~ 159 (307)
T 1zi0_A 81 RGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDE 159 (307)
T ss_dssp CCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCE
T ss_pred CCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCE
Confidence 2221111 1 234456665442 3566788999999999987642 1111223333 34444333 3 457
Q ss_pred EEEEeCCCcEEEEEcCC---------CeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEEEEECCCCc-----eEEEE
Q 001042 1019 VITGSDDWTARMWSISR---------GTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDGG-----IKCVK 1084 (1178)
Q Consensus 1019 l~sgs~dg~I~iwd~~~---------~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iwd~~~~~-----~~~~~ 1084 (1178)
++..+.+|.+..++... |.....+. ....|.++....++..+++.+..|.++-.++..-. -.-+.
T Consensus 160 i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~ 238 (307)
T 1zi0_A 160 VMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVI 238 (307)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEE
T ss_pred EEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEE
Confidence 88888999988887643 11111222 23456666655556678888999998888763210 01111
Q ss_pred --EecccCCcEEEE--ecCCCEEEEEeCCCcEEEEEcCC
Q 001042 1085 --NVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQ 1119 (1178)
Q Consensus 1085 --~~~~h~~~i~~i--s~dg~~Lasgs~Dg~I~iwd~~~ 1119 (1178)
.+......+..+ ..+..-+...+.+|.+.-++...
T Consensus 239 ~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 239 SIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp SSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred eeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 122222344443 22445566667777777667653
No 381
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=36.06 E-value=5.4e+02 Score=29.39 Aligned_cols=103 Identities=8% Similarity=-0.004 Sum_probs=60.3
Q ss_pred CCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCC---ceEEEEe---------cCCccEEEEEEcCC-----EEEEEe-C-
Q 001042 965 SAVLCMEYDDSTG-ILAAGGRDAVANIWDIRAG---RQMHKFL---------GHTKWIRSIRMDRD-----TVITGS-D- 1024 (1178)
Q Consensus 965 ~~I~~l~~sp~~~-~l~sgs~dg~I~lwD~~~~---~~~~~~~---------~~~~~v~~l~~~~~-----~l~sgs-~- 1024 (1178)
..-+.|+|.|+|. .++++...|.|++++.... ..+..+. ........|+++++ .|.+.. .
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 4568899999996 5667788999999975432 1222221 11356788999875 333332 1
Q ss_pred -C----------CcEEEEEcCCC----------eeeeEec--cCCCcEEEEEEecCCCEEEEEeCC
Q 001042 1025 -D----------WTARMWSISRG----------TCDAVLA--CHAGPVQCVEYSSSDRGIITGSSD 1067 (1178)
Q Consensus 1025 -d----------g~I~iwd~~~~----------~~~~~~~--~h~~~I~~l~~spdg~~L~sgs~D 1067 (1178)
+ ..|.-|.+..+ +.+..+. ........++|.|||.+.++.+..
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 1 13444555421 2222222 112246789999999887776643
No 382
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=35.41 E-value=2.6e+02 Score=32.11 Aligned_cols=30 Identities=7% Similarity=0.064 Sum_probs=23.0
Q ss_pred CcEEEEEEecCCC-EEEEEeCCCcEEEEECC
Q 001042 1047 GPVQCVEYSSSDR-GIITGSSDGLLRFWEND 1076 (1178)
Q Consensus 1047 ~~I~~l~~spdg~-~L~sgs~Dg~I~iwd~~ 1076 (1178)
...+.|+|.|+|. .|+++...|.|++++.+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 4567999999996 45556688999999754
No 383
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=34.84 E-value=4.5e+02 Score=28.11 Aligned_cols=231 Identities=12% Similarity=0.050 Sum_probs=121.4
Q ss_pred CCeEEEEeCCCeEEEEeCCCCeEEE---------EecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC---CC------
Q 001042 934 GERVLTASHDGTVKMWDVRTDTCVA---------TVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDI---RA------ 995 (1178)
Q Consensus 934 ~~~l~sgs~dg~V~iwd~~~~~~~~---------~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~---~~------ 995 (1178)
...+++.+.+|.|+--.+.+-+... .++ ..+.+..+........++..+..|.++-+.. ..
T Consensus 3 e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~k-e~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~ 81 (307)
T 1zi0_A 3 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIK-EEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGAR 81 (307)
T ss_dssp CEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSC
T ss_pred CcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeC-CCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCC
Confidence 4467888999999877664422111 111 2345555555556667777888888666654 22
Q ss_pred CceEE---EEecCCccEEEEEE-----cCCEEEEEeCCCcEEEEEcCC-------CeeeeEeccCCCcEEEEEEecCCCE
Q 001042 996 GRQMH---KFLGHTKWIRSIRM-----DRDTVITGSDDWTARMWSISR-------GTCDAVLACHAGPVQCVEYSSSDRG 1060 (1178)
Q Consensus 996 ~~~~~---~~~~~~~~v~~l~~-----~~~~l~sgs~dg~I~iwd~~~-------~~~~~~~~~h~~~I~~l~~spdg~~ 1060 (1178)
|.++. .+ .....|.++.. +..+++..+.+|.++-..+.. |.....+..+ +.+..+....+...
T Consensus 82 G~~i~~~l~l-~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~ 159 (307)
T 1zi0_A 82 GRPIVNLLPL-EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDE 159 (307)
T ss_dssp CEEGGGTSCC-CTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCE
T ss_pred CeEhhhccCC-CCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCE
Confidence 22111 12 22334555433 234799999999999987642 2222223333 55656655555667
Q ss_pred EEEEeCCCcEEEEECCCC----c-e--EEEEEecccCCcEEEEe--cCCCEEEEEeCCCcEEEEEcCCCccccccCCCCC
Q 001042 1061 IITGSSDGLLRFWENDDG----G-I--KCVKNVTIHSSAILSIN--AGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSK 1131 (1178)
Q Consensus 1061 L~sgs~Dg~I~iwd~~~~----~-~--~~~~~~~~h~~~i~~is--~dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~g~~ 1131 (1178)
++..+.+|.+..++...- . - .....+. ....|.++. .++..+++.+..|.++-.++..-+.......|
T Consensus 160 i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG-- 236 (307)
T 1zi0_A 160 VMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKG-- 236 (307)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCC--
T ss_pred EEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCC--
Confidence 888888998888876421 0 0 1111222 234455552 34567888899999988877532221111111
Q ss_pred ccceeEeeccCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001042 1132 MSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEA 1174 (1178)
Q Consensus 1132 ~~~~~~~~~~~~h~~~V~~lafspdg~~Las~s~Dg~V~IWdv 1174 (1178)
..... +....+.+-.+....+..-+...+.+|.+.-.++
T Consensus 237 ---~~~~~-~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~ 275 (307)
T 1zi0_A 237 ---VISIK-VTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRV 275 (307)
T ss_dssp ---EESSC-CCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEG
T ss_pred ---EEeeE-ecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEec
Confidence 11222 2222234444444334444556666776655544
No 384
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=31.47 E-value=1.8e+02 Score=38.02 Aligned_cols=31 Identities=6% Similarity=-0.042 Sum_probs=27.1
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001042 1147 VVRCIASDLERKRICSGGRNGLLRLWEATIN 1177 (1178)
Q Consensus 1147 ~V~~lafspdg~~Las~s~Dg~V~IWdv~tg 1177 (1178)
.+.+++..++..++++-+.|+++|||++.+|
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~ 269 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTN 269 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTT
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCC
Confidence 4556677889999999999999999999987
No 385
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=28.70 E-value=5.3e+02 Score=27.05 Aligned_cols=184 Identities=9% Similarity=0.041 Sum_probs=106.2
Q ss_pred CCCeEEEEeCCCeEEEEe---CCCCeEEEEecCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCc------eEEEE
Q 001042 933 SGERVLTASHDGTVKMWD---VRTDTCVATVGRCSSAVLCMEYDD-STGILAAGGRDAVANIWDIRAGR------QMHKF 1002 (1178)
Q Consensus 933 ~~~~l~sgs~dg~V~iwd---~~~~~~~~~~~~~~~~I~~l~~sp-~~~~l~sgs~dg~I~lwD~~~~~------~~~~~ 1002 (1178)
..+.++.-+.+|.++--. +..+.....+ .....|..+.... +...++..+.+|.++...+..-. ....+
T Consensus 34 t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll-~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~l 112 (276)
T 3no0_A 34 FTEGLFLVSNRGRVYWIAGSQALQGSKVSLK-SREEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKL 112 (276)
T ss_dssp TTSCEEEEETTSEEEEECSHHHHTSEECCCS-STTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCC
T ss_pred CCCEEEEEcCCCeEEEEEhhhCccCcccccC-CCCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEec
Confidence 556677777778765433 2222111112 2355666664422 56789999999999998875432 11122
Q ss_pred ecCCccEEEEEE--cCCEEEEEeCCCcEEEEEcCC---------CeeeeEeccCCCcEEEEEEecCCCEEEEEeCCCcEE
Q 001042 1003 LGHTKWIRSIRM--DRDTVITGSDDWTARMWSISR---------GTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLR 1071 (1178)
Q Consensus 1003 ~~~~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~---------~~~~~~~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~ 1071 (1178)
.. .+.+..+.. ..+.++..+.+|.+..++... |.....+. ....|.++...+++..++..+..|.++
T Consensus 113 ke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~~~~ll~~T~~G~~k 190 (276)
T 3no0_A 113 TE-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDETSGLRIWNGEPYLLVITAKGRVK 190 (276)
T ss_dssp CT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEESSCSEEEEEETTSCEE
T ss_pred CC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCEEEEEEEeCCCCEEEEEeCCCcEE
Confidence 22 233444333 345788899999988887532 22222232 235666666666677888999999999
Q ss_pred EEECCCCc-----eEEEEEecccCCcEEEE--ecCCCEEEEEeCCCcEEE--EEcCCC
Q 001042 1072 FWENDDGG-----IKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSL--FHRPQE 1120 (1178)
Q Consensus 1072 iwd~~~~~-----~~~~~~~~~h~~~i~~i--s~dg~~Lasgs~Dg~I~i--wd~~~~ 1120 (1178)
...+..-. -.-+..+ .....+..+ ..++..++..+.+|.+.. ++...-
T Consensus 191 r~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~i 247 (276)
T 3no0_A 191 KISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKDI 247 (276)
T ss_dssp EEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGGS
T ss_pred EeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHHC
Confidence 88864210 0112222 223344433 233456777788888887 887643
No 386
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=28.69 E-value=6.3e+02 Score=27.88 Aligned_cols=141 Identities=16% Similarity=0.146 Sum_probs=85.8
Q ss_pred CCCeEEEEeCCCeEEEEeCCC---------CeEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC---CC-----
Q 001042 933 SGERVLTASHDGTVKMWDVRT---------DTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDI---RA----- 995 (1178)
Q Consensus 933 ~~~~l~sgs~dg~V~iwd~~~---------~~~~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~---~~----- 995 (1178)
+...+++.+.+|.|+--.+.+ |..-..++ ..+.+..+........++..+..|.++-+.. ..
T Consensus 6 ~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a 84 (370)
T 3l6v_A 6 PEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNA 84 (370)
T ss_dssp CCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTS
T ss_pred CCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCccc
Confidence 466788999999998764321 22223333 3556666666666777888888888776653 22
Q ss_pred -CceEE---EEecCCccEEEEE-E----cCCEEEEEeCCCcEEEEEcCC-------CeeeeEeccCCCcEEEEEEecCCC
Q 001042 996 -GRQMH---KFLGHTKWIRSIR-M----DRDTVITGSDDWTARMWSISR-------GTCDAVLACHAGPVQCVEYSSSDR 1059 (1178)
Q Consensus 996 -~~~~~---~~~~~~~~v~~l~-~----~~~~l~sgs~dg~I~iwd~~~-------~~~~~~~~~h~~~I~~l~~spdg~ 1059 (1178)
|..+. .+. ....|.++. . ...+++.++..|.++...+.. |.....+.. .+.+..+....+..
T Consensus 85 ~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~~~~ 162 (370)
T 3l6v_A 85 RGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTDGDR 162 (370)
T ss_dssp CCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEECSCC
T ss_pred CCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeCCCc
Confidence 22211 122 234455443 3 234899999999999987643 222223332 34555555555566
Q ss_pred EEEEEeCCCcEEEEECC
Q 001042 1060 GIITGSSDGLLRFWEND 1076 (1178)
Q Consensus 1060 ~L~sgs~Dg~I~iwd~~ 1076 (1178)
.++..+.+|.+..++..
T Consensus 163 ~i~l~T~~G~~irf~~~ 179 (370)
T 3l6v_A 163 DVLLFASNGKTVRFGES 179 (370)
T ss_dssp EEEEEETTSEEEEEEGG
T ss_pred eEEEEeCCCeEEEEEcc
Confidence 78888888888777754
No 387
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=26.47 E-value=6.9e+02 Score=27.65 Aligned_cols=228 Identities=11% Similarity=0.010 Sum_probs=132.1
Q ss_pred cceEEEecCCCEEEEEeCCCcEEEEECCC-CcE------------EEEecCCCCceEEEEEeCCCeEEEEeCCCeEEEEe
Q 001042 884 RTVRAINSDRGKVVSGSDDQSVLVWDKQT-SQL------------LEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWD 950 (1178)
Q Consensus 884 ~~V~~~s~d~~~l~sgs~dg~I~iwd~~t-~~~------------~~~l~~h~~~V~~l~~~~~~~l~sgs~dg~V~iwd 950 (1178)
..|..++......+.-..||.|..|-... +++ ...+. -...|..++.. ..+.++-..||.|..|-
T Consensus 59 ~~i~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~-l~~~i~~va~G-~~hs~alt~~G~v~~wG 136 (413)
T 1a12_A 59 EDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVE-LQEKVVQVSAG-DSHTAALTDDGRVFLWG 136 (413)
T ss_dssp SCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEECC-CCSCEEEEEEC-SSEEEEEETTSCEEEEE
T ss_pred CCeEEEEeCCCeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEec-CCCcEEEEecC-CCeEEEEcCCCcEEEee
Confidence 56777877777888888999999996543 110 11111 12356666543 34555667899999997
Q ss_pred C--CC-CeE-----------EEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceE-----------------
Q 001042 951 V--RT-DTC-----------VATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQM----------------- 999 (1178)
Q Consensus 951 ~--~~-~~~-----------~~~~~~~~~~I~~l~~sp~~~~l~sgs~dg~I~lwD~~~~~~~----------------- 999 (1178)
. .. ++. ...+ .....|..++... .+.++-+.||.|+.|-....-++
T Consensus 137 ~~~n~~GqlG~~~~~~~~~~P~~v-~~~~~i~~ia~G~--~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~ 213 (413)
T 1a12_A 137 SFRDNNGVIGLLEPMKKSMVPVQV-QLDVPVVKVASGN--DHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLE 213 (413)
T ss_dssp CEEETTEEEESSBBTBCEEEEEEE-CCSSCEEEEEECS--SEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHH
T ss_pred CCcCCCCccCcCCccccccCCEEe-cCCCCEEEEEecC--ceEEEEcCCCCEEEeeCCCCCccCCCcccccccccccccc
Confidence 5 21 110 1111 2234566665543 34555668899999965431100
Q ss_pred -----EEEec------CCccEEEEEEcCCEEEEEeCCCcEEEEEcCCC-e----------eeeEeccCC---CcEEEEEE
Q 001042 1000 -----HKFLG------HTKWIRSIRMDRDTVITGSDDWTARMWSISRG-T----------CDAVLACHA---GPVQCVEY 1054 (1178)
Q Consensus 1000 -----~~~~~------~~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~-~----------~~~~~~~h~---~~I~~l~~ 1054 (1178)
..... ....|..++......+.-..||.|+.|-.... + ....+..-. ..|..++.
T Consensus 214 ~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~ 293 (413)
T 1a12_A 214 RLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSG 293 (413)
T ss_dssp HHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEE
T ss_pred ccccCceEeeccccccCCccEEEEEeCCCEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEec
Confidence 01111 23467888887777777789999999976431 1 011121111 23655554
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCC----------ceEEEEEecccCCcEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 001042 1055 SSSDRGIITGSSDGLLRFWENDDG----------GIKCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRPQ 1119 (1178)
Q Consensus 1055 spdg~~L~sgs~Dg~I~iwd~~~~----------~~~~~~~~~~h~~~i~~is~dg~~Lasgs~Dg~I~iwd~~~ 1119 (1178)
. ....++-..||.|..|-.... .......+. .-..|..++......++-..||.|..|-...
T Consensus 294 G--~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~-~l~~v~~v~~G~~hs~alt~~G~v~~wG~n~ 365 (413)
T 1a12_A 294 G--QHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLIS-RLPAVSSVACGASVGYAVTKDGRVFAWGMGT 365 (413)
T ss_dssp C--SSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECC-SSSSEEEEEECSSEEEEEETTSCEEEEECCT
T ss_pred c--cceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEec-ccCceeEEEECcceEEEEeCCCCEEEecCCC
Confidence 3 344555567999999975421 111112222 2237888887777777788999999997653
No 388
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=25.25 E-value=7.2e+02 Score=27.40 Aligned_cols=226 Identities=10% Similarity=0.020 Sum_probs=123.5
Q ss_pred cCCCEEEEEeCCCcEEEEECCC---------CcEEEEecCCCCceEEEEEe-CCCeEEEEeCCCeEEEEe---CC-----
Q 001042 891 SDRGKVVSGSDDQSVLVWDKQT---------SQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWD---VR----- 952 (1178)
Q Consensus 891 ~d~~~l~sgs~dg~I~iwd~~t---------~~~~~~l~~h~~~V~~l~~~-~~~~l~sgs~dg~V~iwd---~~----- 952 (1178)
++...+++.+.+|.|+--.+.+ |.....++. ...+..+... ..+.++..+..|.+.-+. +.
T Consensus 5 ~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~ 83 (370)
T 3l6v_A 5 APEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKE-EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSN 83 (370)
T ss_dssp CCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSC-CCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTT
T ss_pred cCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCC-CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcc
Confidence 5677899999999999765421 223334443 4445444444 566788888888876554 32
Q ss_pred -CCeEEEEe-c-CCCCCEEEEEEeC---CCCEEEEEeCCCeEEEEECCCC-------ceEEEEecCCccEEEEEE-c-CC
Q 001042 953 -TDTCVATV-G-RCSSAVLCMEYDD---STGILAAGGRDAVANIWDIRAG-------RQMHKFLGHTKWIRSIRM-D-RD 1017 (1178)
Q Consensus 953 -~~~~~~~~-~-~~~~~I~~l~~sp---~~~~l~sgs~dg~I~lwD~~~~-------~~~~~~~~~~~~v~~l~~-~-~~ 1017 (1178)
.|..+..+ . .....|.++..-. ++.+++.++..|.++...+... .....+.. .+.+..+.. + .+
T Consensus 84 a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~~~~ 162 (370)
T 3l6v_A 84 ARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTDGDR 162 (370)
T ss_dssp SCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEECSCC
T ss_pred cCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeCCCc
Confidence 12222111 1 2245566554432 4568999999999999886432 22222322 233333333 3 34
Q ss_pred EEEEEeCCCcEEEEEcCC---------CeeeeEeccCCCcEEEEEEec--------------------------------
Q 001042 1018 TVITGSDDWTARMWSISR---------GTCDAVLACHAGPVQCVEYSS-------------------------------- 1056 (1178)
Q Consensus 1018 ~l~sgs~dg~I~iwd~~~---------~~~~~~~~~h~~~I~~l~~sp-------------------------------- 1056 (1178)
.++..+.+|.+..++... |.....+. ....|.++...+
T Consensus 163 ~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~ 241 (370)
T 3l6v_A 163 DVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLA-KGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVA 241 (370)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEECCC------------------------------
T ss_pred eEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeC-CCCEEEEEEEeccccccccccccccccccccccccccccccccc
Confidence 788888899888887542 11111222 234455554443
Q ss_pred ---CCCEEEEEeCCCcEEEEECCCCc-----eEEEE--EecccCCcEEEE--ecCCCEEEEEeCCCcEEEEEcCC
Q 001042 1057 ---SDRGIITGSSDGLLRFWENDDGG-----IKCVK--NVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQ 1119 (1178)
Q Consensus 1057 ---dg~~L~sgs~Dg~I~iwd~~~~~-----~~~~~--~~~~h~~~i~~i--s~dg~~Lasgs~Dg~I~iwd~~~ 1119 (1178)
++..+++.+..|..+...+..-. -.-+. .+......+..+ ..++.-+...+..|.+.-..+..
T Consensus 242 ~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~iR~~v~~ 316 (370)
T 3l6v_A 242 DNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLVRTRGSE 316 (370)
T ss_dssp -----CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCEEEEEGGG
T ss_pred cccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeEEEeeHhh
Confidence 45678888999998888765210 01111 122222334333 23344555566777766666654
No 389
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=24.59 E-value=1e+03 Score=28.87 Aligned_cols=227 Identities=10% Similarity=0.108 Sum_probs=113.6
Q ss_pred cCCCCEEEEEeC-----CCcEEEEcCCCCCceee-Eeec-cccc--------ceEEEecCCCEEEEEe-----------C
Q 001042 848 REDAGFFISGST-----DCLVKIWDPSLRGSELR-ATLK-GHTR--------TVRAINSDRGKVVSGS-----------D 901 (1178)
Q Consensus 848 s~d~~~Lasgs~-----Dg~I~iWd~~~~~~~~~-~~l~-~h~~--------~V~~~s~d~~~l~sgs-----------~ 901 (1178)
+||+++++.+-+ -.+++++|+.+ ++.+ ..+. .-.. .+.+|. |++.++.+. .
T Consensus 138 ~~~~~~~~~~ls~~G~d~~~~~~~d~~t--~~~~~~~~~~~~k~~~~~~~~~~~~~W~-d~~~~~~~~~~~~~~~~~~~~ 214 (711)
T 4hvt_A 138 FQNPNRYLISMSFGGKDEMFFREWDLEK--KDFVKNGFEPITNSGKLLEGKFTYPTWI-NKDTIIFNLVLHKNEITSSLY 214 (711)
T ss_dssp SSSTTEEEEEEEETTCSEEEEEEEETTT--TEECTTCSCCBCTTCCBCCEETCCEEEE-ETTEEEECCCCSTTCBCTTSS
T ss_pred CCCCCEEEEEeCCCCCceeEEEEEECCc--CCcCCCCcccccccccccccccceeeEE-CCCEEEEEeCCCCCCcCcCCC
Confidence 488888776422 24799999872 2222 1222 1111 343554 333443332 2
Q ss_pred CCcEEEEECCCCc--EEEEecCCCCceE-EEEEe-CCC-----eEEEEeCC---CeEEEEeCCC--CeEEEEecCCCCCE
Q 001042 902 DQSVLVWDKQTSQ--LLEELKGHDAQVS-CVRML-SGE-----RVLTASHD---GTVKMWDVRT--DTCVATVGRCSSAV 967 (1178)
Q Consensus 902 dg~I~iwd~~t~~--~~~~l~~h~~~V~-~l~~~-~~~-----~l~sgs~d---g~V~iwd~~~--~~~~~~~~~~~~~I 967 (1178)
...|+.|.+.+.. -...+.+....+. ....+ ++. .+++.+.+ ..+.+.|... ++. ..+.......
T Consensus 215 ~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~ 293 (711)
T 4hvt_A 215 PNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKL-QKINMPSDAT 293 (711)
T ss_dssp BCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEE-EECCSCTTCE
T ss_pred CCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcc-eEeecCCcce
Confidence 3568888876642 2333444333332 22222 443 24443322 4566666543 432 3332222221
Q ss_pred EEEEEeCCCCEEEEE----------eCCCeEEEEECCCCc-------eEEE-E-ecCCccEEEEEEcCC-EEEEEeCCCc
Q 001042 968 LCMEYDDSTGILAAG----------GRDAVANIWDIRAGR-------QMHK-F-LGHTKWIRSIRMDRD-TVITGSDDWT 1027 (1178)
Q Consensus 968 ~~l~~sp~~~~l~sg----------s~dg~I~lwD~~~~~-------~~~~-~-~~~~~~v~~l~~~~~-~l~sgs~dg~ 1027 (1178)
+..+.++..++.. ...+.|...|+.++. .... + ......+..+.+.++ .+++...++.
T Consensus 294 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~ 371 (711)
T 4hvt_A 294 --LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKDRVFLATYDNVV 371 (711)
T ss_dssp --EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSSCEEEEEEETTE
T ss_pred --EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECCEEEEEEEECCE
Confidence 2334455544422 246779999987642 2233 2 223446778888665 5556666664
Q ss_pred --EEEEEcCCCe-eeeE-eccC-CCcEEEEEEecCCCEE-EEEe---CCCcEEEEECCCCceE
Q 001042 1028 --ARMWSISRGT-CDAV-LACH-AGPVQCVEYSSSDRGI-ITGS---SDGLLRFWENDDGGIK 1081 (1178)
Q Consensus 1028 --I~iwd~~~~~-~~~~-~~~h-~~~I~~l~~spdg~~L-~sgs---~Dg~I~iwd~~~~~~~ 1081 (1178)
+.++|+.+++ .... +.-. .+.+.....++++..+ ++.+ .-+.+..+|.. ++..
T Consensus 372 ~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~~~ 433 (711)
T 4hvt_A 372 AKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT-HELK 433 (711)
T ss_dssp EEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-SCEE
T ss_pred EEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-CcEE
Confidence 6777776664 2333 2211 3456666666776544 4433 23567777776 5433
No 390
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=24.18 E-value=80 Score=38.45 Aligned_cols=37 Identities=8% Similarity=0.193 Sum_probs=31.7
Q ss_pred ceEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEecC
Q 001042 885 TVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKG 921 (1178)
Q Consensus 885 ~V~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~l~~ 921 (1178)
.|.++..+..++++-+.|+++|+||+.+++++.+..-
T Consensus 223 ~Is~~~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLFHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEeccCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4556677889999999999999999999998887654
No 391
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=20.21 E-value=1.1e+02 Score=37.11 Aligned_cols=37 Identities=11% Similarity=0.123 Sum_probs=30.9
Q ss_pred ccEEEEEEcCCEEEEEeCCCcEEEEEcCCCeeeeEec
Q 001042 1007 KWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLA 1043 (1178)
Q Consensus 1007 ~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 1043 (1178)
..|.++.++..++++-+.|+++|+||+++++++.+..
T Consensus 222 ~~Is~~~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 222 SVISCKLFHERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp CEEEEEEETTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEeccCCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 4577777788899999999999999999998877654
Done!