Query 001043
Match_columns 1177
No_of_seqs 531 out of 1560
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 08:03:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001043.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001043hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dkt_A Ring finger and CHY zin 100.0 2.8E-47 9.6E-52 378.5 7.8 138 975-1117 4-142 (143)
2 2p0n_A Hypothetical protein NM 99.5 9.7E-13 3.3E-17 135.0 18.3 145 291-443 15-168 (172)
3 2p0n_A Hypothetical protein NM 99.4 9.9E-13 3.4E-17 134.9 16.2 149 41-194 15-168 (172)
4 3cax_A Uncharacterized protein 99.2 6.8E-11 2.3E-15 135.3 16.1 149 291-443 8-166 (369)
5 2ecm_A Ring finger and CHY zin 99.2 1.2E-11 4E-16 103.3 4.4 52 1114-1165 3-54 (55)
6 2ep4_A Ring finger protein 24; 99.2 1.7E-11 5.8E-16 108.7 4.9 59 1112-1171 11-69 (74)
7 1iym_A EL5; ring-H2 finger, ub 99.1 2.1E-11 7.3E-16 101.9 4.3 50 1115-1165 4-54 (55)
8 1x4j_A Ring finger protein 38; 99.1 1.5E-11 5.1E-16 109.6 3.1 53 1114-1167 21-73 (75)
9 2ecl_A Ring-box protein 2; RNF 99.1 2.6E-11 8.8E-16 110.4 4.2 49 1116-1165 26-75 (81)
10 2kiz_A E3 ubiquitin-protein li 99.1 3.7E-11 1.3E-15 105.1 4.5 53 1113-1166 11-63 (69)
11 2l0b_A E3 ubiquitin-protein li 99.1 3.5E-11 1.2E-15 111.6 3.7 52 1114-1166 38-89 (91)
12 2ect_A Ring finger protein 126 99.1 9.5E-11 3.3E-15 104.9 4.9 52 1115-1167 14-65 (78)
13 1v87_A Deltex protein 2; ring- 99.0 1.4E-10 4.8E-15 111.1 4.8 54 1114-1167 23-95 (114)
14 3cax_A Uncharacterized protein 99.0 4E-09 1.4E-13 120.7 16.3 150 41-192 8-164 (369)
15 3ng2_A RNF4, snurf, ring finge 98.9 2.7E-10 9.3E-15 99.7 3.5 53 1114-1166 8-63 (71)
16 2ea6_A Ring finger protein 4; 98.9 2.6E-10 8.7E-15 99.0 3.2 51 1115-1165 14-67 (69)
17 3dpl_R Ring-box protein 1; ubi 98.9 4.8E-10 1.6E-14 107.6 4.8 33 1132-1164 67-99 (106)
18 1chc_A Equine herpes virus-1 r 98.9 5E-10 1.7E-14 97.5 4.3 51 1115-1168 4-54 (68)
19 2xeu_A Ring finger protein 4; 98.9 3.9E-10 1.3E-14 96.5 3.5 52 1115-1166 2-56 (64)
20 2ecn_A Ring finger protein 141 98.9 4E-10 1.4E-14 98.8 2.2 54 1115-1173 14-67 (70)
21 2ct2_A Tripartite motif protei 98.8 2.4E-09 8.1E-14 97.4 4.5 51 1115-1165 14-67 (88)
22 2d8t_A Dactylidin, ring finger 98.8 2.1E-09 7.1E-14 94.8 3.2 48 1115-1166 14-61 (71)
23 2djb_A Polycomb group ring fin 98.8 4.1E-09 1.4E-13 93.2 4.7 49 1115-1166 14-62 (72)
24 4a0k_B E3 ubiquitin-protein li 98.8 9.4E-10 3.2E-14 107.3 0.4 50 1115-1164 47-110 (117)
25 1e4u_A Transcriptional repress 98.8 6.5E-09 2.2E-13 94.4 5.7 61 1115-1177 10-73 (78)
26 1g25_A CDK-activating kinase a 98.7 4.6E-09 1.6E-13 90.9 4.3 51 1116-1166 3-55 (65)
27 4ayc_A E3 ubiquitin-protein li 98.7 5.7E-09 1.9E-13 103.8 3.5 47 1116-1166 53-99 (138)
28 2d8s_A Cellular modulator of i 98.7 6.7E-09 2.3E-13 94.8 3.5 51 1113-1165 12-69 (80)
29 2csy_A Zinc finger protein 183 98.7 9.5E-09 3.3E-13 92.7 4.2 47 1115-1165 14-60 (81)
30 2ecy_A TNF receptor-associated 98.7 1.4E-08 4.6E-13 88.2 4.6 49 1115-1167 14-63 (66)
31 4ap4_A E3 ubiquitin ligase RNF 98.7 9.6E-09 3.3E-13 99.7 3.7 52 1115-1166 6-60 (133)
32 2yur_A Retinoblastoma-binding 98.6 1.5E-08 5.2E-13 90.1 4.4 52 1115-1170 14-68 (74)
33 3lrq_A E3 ubiquitin-protein li 98.6 1.3E-08 4.6E-13 95.8 3.4 47 1116-1165 22-69 (100)
34 2ysl_A Tripartite motif-contai 98.6 2.4E-08 8.1E-13 87.9 4.5 48 1114-1165 18-68 (73)
35 2y43_A E3 ubiquitin-protein li 98.6 2.3E-08 7.8E-13 93.6 4.0 48 1116-1166 22-69 (99)
36 2ckl_A Polycomb group ring fin 98.6 2.7E-08 9.3E-13 94.6 4.2 49 1115-1166 14-62 (108)
37 4ap4_A E3 ubiquitin ligase RNF 98.5 3.4E-08 1.2E-12 95.8 4.0 53 1114-1166 70-125 (133)
38 1t1h_A Gspef-atpub14, armadill 98.5 4.4E-08 1.5E-12 87.5 3.6 48 1115-1166 7-55 (78)
39 2ecw_A Tripartite motif-contai 98.5 5.2E-08 1.8E-12 87.5 4.0 47 1115-1165 18-70 (85)
40 2ckl_B Ubiquitin ligase protei 98.5 4.4E-08 1.5E-12 99.9 3.9 48 1116-1166 54-102 (165)
41 2egp_A Tripartite motif-contai 98.5 2.3E-08 7.8E-13 89.2 1.4 48 1115-1166 11-65 (79)
42 2ecj_A Tripartite motif-contai 98.5 6.1E-08 2.1E-12 81.4 3.9 42 1115-1160 14-58 (58)
43 2ysj_A Tripartite motif-contai 98.5 7.2E-08 2.4E-12 82.8 4.5 42 1115-1160 19-63 (63)
44 2ecv_A Tripartite motif-contai 98.5 5.7E-08 2E-12 87.3 3.8 48 1115-1166 18-71 (85)
45 3fl2_A E3 ubiquitin-protein li 98.5 7E-08 2.4E-12 94.0 3.8 47 1116-1166 52-99 (124)
46 2vje_A E3 ubiquitin-protein li 98.4 8.4E-08 2.9E-12 83.6 3.1 57 1112-1171 4-62 (64)
47 1jm7_A BRCA1, breast cancer ty 98.4 1.5E-07 5E-12 89.4 3.7 47 1116-1166 21-70 (112)
48 3ztg_A E3 ubiquitin-protein li 98.4 1.6E-07 5.4E-12 86.5 3.6 47 1115-1165 12-61 (92)
49 3l11_A E3 ubiquitin-protein li 98.4 8.4E-08 2.9E-12 92.1 1.5 47 1116-1166 15-62 (115)
50 2vje_B MDM4 protein; proto-onc 98.3 1.6E-07 5.5E-12 81.5 2.5 54 1115-1171 6-61 (63)
51 1z6u_A NP95-like ring finger p 98.3 2.4E-07 8.3E-12 93.7 4.0 47 1116-1166 78-125 (150)
52 3hct_A TNF receptor-associated 98.3 2E-07 6.9E-12 90.1 2.8 47 1116-1166 18-65 (118)
53 2ct0_A Non-SMC element 1 homol 98.3 3E-07 1E-11 82.8 3.7 47 1116-1165 15-63 (74)
54 1rmd_A RAG1; V(D)J recombinati 98.3 3.5E-07 1.2E-11 87.9 3.6 47 1116-1166 23-70 (116)
55 4ic3_A E3 ubiquitin-protein li 98.2 3.7E-07 1.3E-11 81.5 2.3 48 1116-1171 24-72 (74)
56 2y1n_A E3 ubiquitin-protein li 98.2 7.8E-07 2.7E-11 102.5 4.7 52 1115-1170 331-383 (389)
57 1bor_A Transcription factor PM 98.1 5.8E-07 2E-11 76.0 1.7 45 1114-1165 4-48 (56)
58 1jm7_B BARD1, BRCA1-associated 98.1 6.8E-07 2.3E-11 86.3 2.0 45 1116-1165 22-66 (117)
59 2kr4_A Ubiquitin conjugation f 98.1 1.4E-06 4.7E-11 80.0 3.4 47 1115-1165 13-59 (85)
60 2kre_A Ubiquitin conjugation f 98.0 1.6E-06 5.6E-11 82.1 3.0 47 1115-1165 28-74 (100)
61 2ea5_A Cell growth regulator w 98.0 3E-06 1E-10 74.7 4.3 51 1115-1173 14-65 (68)
62 2ecg_A Baculoviral IAP repeat- 98.0 2.5E-06 8.7E-11 76.1 3.8 48 1116-1171 25-73 (75)
63 3knv_A TNF receptor-associated 98.0 1.1E-06 3.7E-11 88.1 1.0 46 1115-1164 30-76 (141)
64 1wgm_A Ubiquitin conjugation f 98.0 2.7E-06 9.2E-11 80.3 3.6 47 1115-1165 21-68 (98)
65 2yho_A E3 ubiquitin-protein li 98.0 2.3E-06 7.9E-11 77.6 2.4 52 1116-1175 18-70 (79)
66 3k1l_B Fancl; UBC, ring, RWD, 97.9 2.1E-06 7.3E-11 96.7 1.9 53 1113-1165 305-372 (381)
67 1vyx_A ORF K3, K3RING; zinc-bi 97.8 9.6E-06 3.3E-10 70.1 3.7 49 1112-1164 2-57 (60)
68 3hcs_A TNF receptor-associated 97.8 6.3E-06 2.2E-10 84.3 2.7 47 1116-1166 18-65 (170)
69 2yu4_A E3 SUMO-protein ligase 97.7 1.4E-05 4.9E-10 74.5 3.4 46 1115-1163 6-59 (94)
70 2c2l_A CHIP, carboxy terminus 97.7 1.3E-05 4.5E-10 86.9 3.6 47 1115-1165 207-254 (281)
71 1wim_A KIAA0161 protein; ring 97.7 1.4E-05 4.9E-10 74.1 2.9 48 1115-1163 4-61 (94)
72 3htk_C E3 SUMO-protein ligase 97.5 3.1E-05 1.1E-09 84.8 3.1 48 1115-1165 180-231 (267)
73 2f42_A STIP1 homology and U-bo 97.5 4.5E-05 1.5E-09 79.6 3.5 46 1116-1165 106-152 (179)
74 3t6p_A Baculoviral IAP repeat- 97.4 3E-05 1E-09 88.4 1.6 48 1116-1171 295-343 (345)
75 2bay_A PRE-mRNA splicing facto 97.3 7.3E-05 2.5E-09 64.7 2.5 48 1116-1166 3-50 (61)
76 3vk6_A E3 ubiquitin-protein li 96.8 0.00067 2.3E-08 64.1 3.5 50 1118-1170 3-53 (101)
77 3u9j_A F-BOX/LRR-repeat protei 96.5 0.015 5.3E-07 57.5 10.8 146 44-194 8-156 (160)
78 3nw0_A Non-structural maintena 95.5 0.0068 2.3E-07 65.8 3.8 46 1117-1165 181-228 (238)
79 3u9j_A F-BOX/LRR-repeat protei 94.4 0.19 6.4E-06 49.9 10.0 144 294-442 8-155 (160)
80 2ko5_A Ring finger protein Z; 85.7 0.19 6.6E-06 47.0 0.6 44 1116-1165 28-72 (99)
81 2jrp_A Putative cytoplasmic pr 74.3 1.2 4.1E-05 40.8 1.8 49 999-1064 3-58 (81)
82 2kwj_A Zinc finger protein DPF 73.1 0.64 2.2E-05 44.8 -0.3 87 1076-1166 2-111 (114)
83 3v43_A Histone acetyltransfera 72.9 1.3 4.4E-05 42.5 1.7 73 1087-1162 22-111 (112)
84 2ysm_A Myeloid/lymphoid or mix 71.1 1.7 5.9E-05 41.3 2.2 45 1118-1163 56-104 (111)
85 2rgt_A Fusion of LIM/homeobox 67.4 2.9 9.9E-05 42.3 3.1 41 1116-1166 65-105 (169)
86 2jne_A Hypothetical protein YF 67.4 1.5 5.1E-05 41.3 0.8 49 999-1064 33-88 (101)
87 2jun_A Midline-1; B-BOX, TRIM, 66.4 2.9 9.8E-05 38.6 2.6 34 1116-1151 3-38 (101)
88 2lbm_A Transcriptional regulat 64.6 4.9 0.00017 40.4 4.0 89 1070-1162 12-116 (142)
89 4ayb_P DNA-directed RNA polyme 62.4 3.7 0.00013 33.8 2.1 29 1055-1083 1-34 (48)
90 2jtn_A LIM domain-binding prot 58.8 9.6 0.00033 38.9 5.1 47 1115-1171 118-164 (182)
91 2jrp_A Putative cytoplasmic pr 55.2 4.1 0.00014 37.3 1.4 69 1074-1175 4-72 (81)
92 3ql9_A Transcriptional regulat 54.8 7.6 0.00026 38.4 3.4 68 1092-1163 32-111 (129)
93 4bbq_A Lysine-specific demethy 54.6 2 6.8E-05 41.1 -0.8 45 1117-1162 60-113 (117)
94 1wev_A Riken cDNA 1110020M19; 54.2 2.2 7.5E-05 39.3 -0.6 61 1116-1176 16-85 (88)
95 3lqh_A Histone-lysine N-methyl 53.2 4.9 0.00017 41.9 1.8 49 1117-1166 3-66 (183)
96 1we9_A PHD finger family prote 51.9 3.2 0.00011 35.6 0.2 49 1115-1163 5-58 (64)
97 1wil_A KIAA1045 protein; ring 51.9 11 0.00038 34.7 3.7 34 1115-1150 14-47 (89)
98 1x61_A Thyroid receptor intera 51.3 7.8 0.00027 33.2 2.5 40 1116-1165 5-44 (72)
99 2lri_C Autoimmune regulator; Z 50.7 9.3 0.00032 33.4 2.9 44 1116-1163 12-59 (66)
100 2dkt_A Ring finger and CHY zin 47.1 4.5 0.00016 40.7 0.4 26 1077-1103 85-110 (143)
101 1rut_X Flinc4, fusion protein 45.1 6.7 0.00023 40.4 1.3 39 1118-1166 71-109 (188)
102 3rfy_A Peptidyl-prolyl CIS-tra 44.2 1.1E+02 0.0038 35.1 11.2 79 73-155 45-143 (369)
103 1g47_A Pinch protein; LIM doma 43.8 12 0.0004 32.5 2.5 43 1115-1167 10-52 (77)
104 3agt_A Hemerythrin-like domain 42.4 38 0.0013 32.8 6.2 50 361-421 18-67 (136)
105 2pv0_B DNA (cytosine-5)-methyl 41.8 19 0.00067 41.5 4.5 85 1073-1163 51-148 (386)
106 2k16_A Transcription initiatio 41.1 6.8 0.00023 34.6 0.5 49 1116-1165 18-70 (75)
107 1x4l_A Skeletal muscle LIM-pro 40.8 15 0.00051 31.5 2.7 41 1116-1166 5-47 (72)
108 2egq_A FHL1 protein; LIM domai 40.4 13 0.00044 32.3 2.2 42 1115-1166 14-58 (77)
109 6rxn_A Rubredoxin; electron tr 40.2 12 0.0004 30.8 1.7 26 1055-1080 2-38 (46)
110 1wyh_A SLIM 2, skeletal muscle 39.2 13 0.00046 31.6 2.1 41 1116-1166 5-45 (72)
111 1x4k_A Skeletal muscle LIM-pro 39.0 16 0.00055 31.2 2.6 42 1116-1167 5-46 (72)
112 1x63_A Skeletal muscle LIM-pro 39.0 17 0.00059 31.8 2.8 42 1116-1167 15-56 (82)
113 2xqn_T Testin, TESS; metal-bin 37.0 16 0.00053 34.9 2.4 41 1115-1165 62-104 (126)
114 1zfo_A LAsp-1; LIM domain, zin 36.1 12 0.00041 27.9 1.1 30 1115-1147 2-31 (31)
115 1x6a_A LIMK-2, LIM domain kina 35.4 18 0.00063 31.7 2.4 43 1116-1170 15-57 (81)
116 3f6q_B LIM and senescent cell 35.1 15 0.0005 31.1 1.7 43 1115-1167 10-52 (72)
117 2l3k_A Rhombotin-2, linker, LI 34.6 15 0.00052 35.1 1.8 9 1139-1147 29-37 (123)
118 2v3b_B Rubredoxin 2, rubredoxi 34.6 16 0.00056 30.9 1.8 14 1055-1068 1-15 (55)
119 1x68_A FHL5 protein; four-and- 34.3 19 0.00065 31.3 2.3 41 1116-1166 5-47 (76)
120 2ehe_A Four and A half LIM dom 34.2 22 0.00076 31.2 2.8 41 1116-1166 15-55 (82)
121 2kn9_A Rubredoxin; metalloprot 34.1 19 0.00064 33.0 2.2 15 1054-1068 24-39 (81)
122 1dx8_A Rubredoxin; electron tr 33.6 17 0.00058 32.3 1.8 13 1054-1066 4-16 (70)
123 1nyp_A Pinch protein; LIM doma 32.3 13 0.00044 31.3 0.9 39 1116-1166 5-43 (66)
124 2xjy_A Rhombotin-2; oncoprotei 31.8 20 0.00068 34.3 2.2 39 1118-1166 68-106 (131)
125 2d8x_A Protein pinch; LIM doma 31.4 23 0.00079 30.1 2.3 40 1116-1167 5-44 (70)
126 1f62_A Transcription factor WS 31.3 25 0.00086 28.6 2.4 45 1118-1163 2-50 (51)
127 1rij_A E6APN1 peptide; Trp-CAG 31.3 24 0.00083 24.9 1.9 19 234-252 2-21 (26)
128 1twf_L ABC10-alpha, DNA-direct 31.2 22 0.00075 31.6 2.1 25 1056-1080 27-53 (70)
129 2cup_A Skeletal muscle LIM-pro 29.8 25 0.00084 32.0 2.4 44 1117-1165 34-77 (101)
130 1s24_A Rubredoxin 2; electron 29.7 19 0.00066 33.3 1.6 17 1052-1068 30-47 (87)
131 2vpb_A Hpygo1, pygopus homolog 29.1 9.7 0.00033 33.2 -0.5 48 1115-1162 7-65 (65)
132 2ysm_A Myeloid/lymphoid or mix 28.6 20 0.00068 33.9 1.5 36 1114-1151 5-41 (111)
133 2l5u_A Chromodomain-helicase-D 28.2 29 0.00099 29.6 2.3 47 1113-1163 8-58 (61)
134 2cor_A Pinch protein; LIM doma 28.2 28 0.00096 30.6 2.3 40 1115-1166 14-53 (79)
135 4rxn_A Rubredoxin; electron tr 27.4 25 0.00086 29.8 1.7 14 1055-1068 1-15 (54)
136 2kdx_A HYPA, hydrogenase/ureas 26.8 27 0.00093 33.5 2.2 26 1056-1081 72-99 (119)
137 2jne_A Hypothetical protein YF 26.7 14 0.00048 34.9 0.1 24 1091-1126 48-71 (101)
138 3i2d_A E3 SUMO-protein ligase 26.6 43 0.0015 38.5 4.0 47 1116-1165 249-299 (371)
139 2xb1_A Pygopus homolog 2, B-ce 26.6 9.5 0.00033 36.2 -1.1 49 1116-1164 3-62 (105)
140 3jyw_9 60S ribosomal protein L 26.2 27 0.00092 31.3 1.8 24 1056-1079 25-51 (72)
141 1v6g_A Actin binding LIM prote 26.2 36 0.0012 29.8 2.7 39 1116-1166 15-53 (81)
142 1wig_A KIAA1808 protein; LIM d 26.1 40 0.0014 29.2 2.9 39 1116-1166 5-43 (73)
143 2dar_A PDZ and LIM domain prot 25.7 30 0.001 31.0 2.1 41 1114-1166 23-63 (90)
144 2cu8_A Cysteine-rich protein 2 25.3 30 0.001 29.9 2.0 41 1115-1166 8-48 (76)
145 4fo9_A E3 SUMO-protein ligase 25.1 49 0.0017 38.0 4.1 47 1116-1165 215-265 (360)
146 3oao_A Uncharacterized protein 25.1 1.4E+02 0.0048 30.0 7.0 73 143-216 41-126 (147)
147 1e8j_A Rubredoxin; iron-sulfur 24.8 40 0.0014 28.2 2.5 12 1055-1066 1-12 (52)
148 3cc2_Z 50S ribosomal protein L 24.6 19 0.00066 35.0 0.6 30 1055-1084 58-90 (116)
149 3izc_m 60S ribosomal protein R 24.4 26 0.00087 32.8 1.4 14 1070-1083 52-65 (92)
150 2jvx_A NF-kappa-B essential mo 24.3 13 0.00045 27.5 -0.4 17 1154-1170 3-19 (28)
151 1wii_A Hypothetical UPF0222 pr 24.3 22 0.00077 32.7 1.0 11 1115-1125 46-56 (85)
152 3u5c_f 40S ribosomal protein S 24.3 36 0.0012 34.3 2.5 59 978-1065 83-146 (152)
153 3a1b_A DNA (cytosine-5)-methyl 24.1 34 0.0012 35.0 2.4 85 1072-1163 36-134 (159)
154 2ajj_A NS5A, nonstructural pro 23.9 64 0.0022 23.9 3.0 21 645-665 5-25 (28)
155 1tac_A TAT protein; transcript 23.8 50 0.0017 30.4 3.1 23 1059-1092 26-48 (86)
156 3u5n_A E3 ubiquitin-protein li 23.8 19 0.00065 37.8 0.4 47 1114-1164 5-55 (207)
157 2kgg_A Histone demethylase jar 23.6 26 0.00088 28.9 1.1 44 1117-1161 3-52 (52)
158 2cur_A Skeletal muscle LIM-pro 23.6 37 0.0013 28.7 2.2 39 1116-1166 5-43 (69)
159 3agt_A Hemerythrin-like domain 23.5 4.9E+02 0.017 24.9 13.5 112 295-427 17-132 (136)
160 1iml_A CRIP, cysteine rich int 23.5 22 0.00074 30.8 0.7 19 1139-1165 20-38 (76)
161 2dj7_A Actin-binding LIM prote 23.4 41 0.0014 29.7 2.5 41 1115-1166 14-54 (80)
162 3o70_A PHD finger protein 13; 23.1 17 0.00059 31.8 -0.0 48 1114-1163 17-67 (68)
163 1vq8_Z 50S ribosomal protein L 22.9 21 0.00073 32.7 0.5 30 1056-1085 26-58 (83)
164 1mm2_A MI2-beta; PHD, zinc fin 22.8 27 0.00092 29.8 1.1 47 1114-1164 7-57 (61)
165 1x3h_A Leupaxin; paxillin fami 22.7 40 0.0014 29.3 2.3 40 1116-1167 15-54 (80)
166 2co8_A NEDD9 interacting prote 22.6 43 0.0015 29.6 2.5 43 1114-1167 13-55 (82)
167 3iz5_m 60S ribosomal protein L 22.3 27 0.00092 32.7 1.1 10 1071-1080 53-62 (92)
168 1wep_A PHF8; structural genomi 22.3 51 0.0017 29.3 2.9 47 1117-1165 13-65 (79)
169 3cw1_L U1 small nuclear ribonu 21.9 23 0.00079 32.1 0.6 13 1055-1067 1-13 (77)
170 2l4z_A DNA endonuclease RBBP8, 21.7 27 0.00093 33.7 1.0 45 1116-1171 61-106 (123)
171 1j2o_A FLIN2, fusion of rhombo 21.6 44 0.0015 31.4 2.5 10 1156-1165 32-41 (114)
172 2cuq_A Four and A half LIM dom 21.2 44 0.0015 29.0 2.2 38 1116-1165 15-52 (80)
173 1v6g_A Actin binding LIM prote 20.9 53 0.0018 28.7 2.7 17 991-1007 8-24 (81)
174 3o36_A Transcription intermedi 20.7 27 0.00092 35.8 0.8 45 1116-1164 4-52 (184)
175 4a17_Y RPL37A, 60S ribosomal p 20.2 26 0.0009 33.3 0.6 14 1070-1083 52-65 (103)
176 1yk4_A Rubredoxin, RD; electro 20.1 44 0.0015 28.0 1.8 11 1057-1067 2-13 (52)
177 1x62_A C-terminal LIM domain p 20.1 46 0.0016 29.0 2.1 40 1115-1166 14-53 (79)
178 1wem_A Death associated transc 20.1 22 0.00074 31.5 -0.0 48 1116-1165 16-72 (76)
179 3kdw_A Putative sugar binding 20.1 4.4E+02 0.015 28.0 9.6 144 93-243 7-166 (221)
No 1
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=100.00 E-value=2.8e-47 Score=378.55 Aligned_cols=138 Identities=45% Similarity=1.056 Sum_probs=131.9
Q ss_pred CCCCCcccccccccCCccccccccccccccCCcccCcccccccCCCCCCccccceeeccccCccccCCCCCCCCCCCCcc
Q 001043 975 GCSPSFRDAEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCSGLS 1054 (1177)
Q Consensus 975 ~~~~~~~~~~~~~~gC~HY~r~c~l~~~cC~k~y~Cr~CHde~~~H~~~r~~~~~~~C~~C~~~q~~~~~C~~~~C~~~~ 1054 (1177)
|..|+|+|++++++||+||+|+|+|+||||+||||||+|||+.++|+++|+.+++|+||.|+++||+++.|.+ | |..
T Consensus 4 ~~~~~~~~~~~~~~gC~HY~r~~~lr~pCC~k~y~Cr~CHde~~dH~l~r~~~~~vlCg~C~~~q~~~~~C~~--C-g~~ 80 (143)
T 2dkt_A 4 GSSGGVRNLAQGPRGCEHYDRACLLKAPCCDKLYTCRLCHDTNEDHQLDRFKVKEVQCINCEKLQHAQQTCED--C-STL 80 (143)
T ss_dssp CCCCCCCCCCCCSSSCSSCCCSEEEEETTTTEEESSHHHHHHTSSSCCCSSSCCCEEESSSCCEECSCSBCSS--S-CCB
T ss_pred CCCCcccccccCcCCCcccCCCeeEECCCCCCccchhhhhccccccccchhccceeeecccCccccccCcCCC--C-Ccc
Confidence 5578999999999999999999999999999999999999999999999999999999999999999999988 5 999
Q ss_pred cceEeccccccccCCCCcccCCCCCccccCCCCCccccccCCccccccccc-ccccccccCCCC
Q 001043 1055 MAKYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKL-VDHKCREKGLET 1117 (1177)
Q Consensus 1055 ~a~Y~C~~C~l~dd~k~~yHC~~CgiCrvg~gl~~~~fhC~~C~~C~s~~l-~~H~C~e~~~~~ 1117 (1177)
|++|||+||||||++|+||||++|||||||+ |+|||||++||+|+++++ ++|+|+|+++..
T Consensus 81 f~~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~--~~~ffHC~~C~~C~s~~l~~~H~C~e~~~~s 142 (143)
T 2dkt_A 81 FGEYYCSICHLFDKDKRQYHCESCGICRIGP--KEDFFHCLKCNLCLTTNLRGKHKCIESGPSS 142 (143)
T ss_dssp SCSEECSSSCCEECSSSEEEETTTTEEEESC--GGGEEEETTTTEEEEGGGSSSSCCSCCCSCC
T ss_pred ceeeEeceeecccCCCceecCCCCCceeccC--CcCcEECCcCCeeeccccCcCcccCccCccC
Confidence 9999999999999889999999999999996 699999999999999999 899999998753
No 2
>2p0n_A Hypothetical protein NMB1532; structural genomics, APC83866, unknown function, PSI-2, PROT structure initiative; HET: MSE; 1.41A {Neisseria meningitidis}
Probab=99.47 E-value=9.7e-13 Score=135.00 Aligned_cols=145 Identities=14% Similarity=0.169 Sum_probs=119.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CcccHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhh--------h
Q 001043 291 SCPIDEIMLWHNAIKRELNDIAEAARKIQLSG-DFSDLSAFNKRLQFIAEVCIFHSIAEDKVIFPAVDVEL--------S 361 (1177)
Q Consensus 291 ~~pid~l~~~HkALRrEL~~L~~~a~~i~~~g-d~~~L~~L~~r~~fl~~vl~~Hs~aEDevlFPaL~~r~--------~ 361 (1177)
..||+.|...|+.||+.+..|...+..+...| +...+..+..-+.+|...+..||..||++|||+|..+. .
T Consensus 15 ~~~i~~L~~~H~~i~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Hh~~EE~~lfP~l~~~~~~~~~~i~~ 94 (172)
T 2p0n_A 15 AEPIEMLYACHGKVRRFCGQVAMLSDYIAENGCNQIVLQTIRQIAQYFNVAAPLHHEDEEENFFPLLLQYAPQAQESVDE 94 (172)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHCGGGHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHChhHHHHhhHHHHhhCchhhHHHHH
Confidence 56999999999999999999998887764333 22334677888889999999999999999999998642 8
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhCCHHHHHHHHHhH
Q 001043 362 FAQEHAEEEIQFDKLRCLIESIQSAGANSSTAEFYTKLCSQADLIMASIQKHFRNEEVQVLPLARRHFSPKRQRELLYQS 441 (1177)
Q Consensus 362 me~EH~~ie~l~e~l~~ll~~~~~~~~~~~~~~~~~eLa~~le~L~~~L~~Hf~~EE~qvfPLl~~~fS~eEq~eL~~~~ 441 (1177)
|..||..+...++.|...+..+..+.... . .+..+..+.+.+..|+.+||+ +||++.+.+|.++|.+|+.++
T Consensus 95 l~~EH~~~~~~l~~l~~~l~~~~~~~~~~-~------~~~~l~~~~~~l~~Hi~~EE~-lfP~a~~~L~~~~~~~l~~~~ 166 (172)
T 2p0n_A 95 LLRQHIGLHDNWAAVSAEFAKLEADNAYV-P------DEEAFKRFVAGYDVHLAIEEP-LFDMGNTFIPKEKLTEIGEIM 166 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCC-C------CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCc-c------cHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCHHHHHHHHHHH
Confidence 89999999999999999887776443211 1 125567778899999999999 999999999999999999876
Q ss_pred hh
Q 001043 442 LC 443 (1177)
Q Consensus 442 l~ 443 (1177)
..
T Consensus 167 ~~ 168 (172)
T 2p0n_A 167 AA 168 (172)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 3
>2p0n_A Hypothetical protein NMB1532; structural genomics, APC83866, unknown function, PSI-2, PROT structure initiative; HET: MSE; 1.41A {Neisseria meningitidis}
Probab=99.45 E-value=9.9e-13 Score=134.94 Aligned_cols=149 Identities=13% Similarity=0.085 Sum_probs=122.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHHHHHhhccccccchhhHHHhh---hHHHHH
Q 001043 41 KSPILIFLFFHKAIKSELDVLHRAAMAFATNLGGGGDINKLLERYHFFRAIYKHHCNAEDEVIFPALDIRV---KNIART 117 (1177)
Q Consensus 41 ~~Pi~~~~~~HkAlR~el~~l~~~~~~~~~~~~d~~~~~~l~~r~~~L~~~~~~H~~aEDevI~PaL~~Rv---~~v~~~ 117 (1177)
+.||+++.--|+.+|+.|..|..++..+.....+......+.+-+++|...++.||..|++++||+|..+. .+++..
T Consensus 15 ~~~i~~L~~~H~~i~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Hh~~EE~~lfP~l~~~~~~~~~~i~~ 94 (172)
T 2p0n_A 15 AEPIEMLYACHGKVRRFCGQVAMLSDYIAENGCNQIVLQTIRQIAQYFNVAAPLHHEDEEENFFPLLLQYAPQAQESVDE 94 (172)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHCGGGHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHChhHHHHhhHHHHhhCchhhHHHHH
Confidence 34999999999999999999988887765411233344677778888999999999999999999998765 467899
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhhcCch--hHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhCCHHHHHHHHHHHhh
Q 001043 118 YSLEHEGESVLFDQLFELLNSSMRNEE--SYRRELASCTGALQTSISQHMSKEEEQVFPLLIEKFSFEEQASLVWQFLC 194 (1177)
Q Consensus 118 ~~~EH~~~~~lf~~l~~~l~~~~~~~~--~~~~eLa~~l~~l~~~l~qHm~~EE~~v~PLl~~~fS~~E~a~L~~~~i~ 194 (1177)
|..||..+..+++.|...+..+..+.. .. +..+..+...+.+|+++||. +||.+.+.+|.++|.+|+.++.+
T Consensus 95 l~~EH~~~~~~l~~l~~~l~~~~~~~~~~~~----~~~l~~~~~~l~~Hi~~EE~-lfP~a~~~L~~~~~~~l~~~~~~ 168 (172)
T 2p0n_A 95 LLRQHIGLHDNWAAVSAEFAKLEADNAYVPD----EEAFKRFVAGYDVHLAIEEP-LFDMGNTFIPKEKLTEIGEIMAA 168 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCCCC----HHHHHHHHHHHHHHHHHHHH-HHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCccc----HHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999999999999999988864422 11 14455566699999999999 99999999999999999998754
No 4
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=99.24 E-value=6.8e-11 Score=135.31 Aligned_cols=149 Identities=15% Similarity=0.160 Sum_probs=123.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcccCC----cccHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhh------
Q 001043 291 SCPIDEIMLWHNAIKRELNDIAEAARKIQLSGD----FSDLSAFNKRLQFIAEVCIFHSIAEDKVIFPAVDVEL------ 360 (1177)
Q Consensus 291 ~~pid~l~~~HkALRrEL~~L~~~a~~i~~~gd----~~~L~~L~~r~~fl~~vl~~Hs~aEDevlFPaL~~r~------ 360 (1177)
-+|++.|...|++|++.|..|...+.++..... ...+..+.+-+.+|.++-..|+..|+++|||+|+.+.
T Consensus 8 ghpi~~l~~EH~~i~~~l~~l~~~~~~i~~~~~~~~~~~~~~~l~~~~~~l~~l~~~H~~kEE~~LFP~le~~g~~~p~~ 87 (369)
T 3cax_A 8 GHPLKTLYQENKEIMKDAEMLNLYAKTLATTKDERMREEILGVLEEIVSSLRMVGFTHYNREEMLIFPYIERRGLTVIAT 87 (369)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHTHHHHHTTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHhhhhhHhhhhHHHHHhCCCCCCc
Confidence 569999999999999999999999999863332 2467889999999977443788889999999997552
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Q 001043 361 SFAQEHAEEEIQFDKLRCLIESIQSAGANSSTAEFYTKLCSQADLIMASIQKHFRNEEVQVLPLARRHFSPKRQRELLYQ 440 (1177)
Q Consensus 361 ~me~EH~~ie~l~e~l~~ll~~~~~~~~~~~~~~~~~eLa~~le~L~~~L~~Hf~~EE~qvfPLl~~~fS~eEq~eL~~~ 440 (1177)
.|..||+++..++..+..++..... . + . .+.+..+...+..+...+.+|+.+||+.|||++.+.||.++|..+..+
T Consensus 88 vM~~eHd~~r~~l~~l~~~~~~~~~-~-~-~-~~~~~~~~~~l~~~~~~l~~Hi~kEe~iLfP~a~~~ls~~dw~~i~~~ 163 (369)
T 3cax_A 88 VLWTKHDEIRAMIKQLAELLRKREE-M-P-W-EEFVEKFKAKAGEVAFALSDMVFRENNIFYPTLKALLSEGEWKAIKMQ 163 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTGGG-S-C-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHH
T ss_pred hHHHHhHHHHHHHHHHHHHHhcccc-c-c-h-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 8999999999999999999965331 1 1 0 244677888899999999999999999999999999999999999775
Q ss_pred Hhh
Q 001043 441 SLC 443 (1177)
Q Consensus 441 ~l~ 443 (1177)
+-.
T Consensus 164 ~~e 166 (369)
T 3cax_A 164 EDE 166 (369)
T ss_dssp GGG
T ss_pred Ccc
Confidence 543
No 5
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.18 E-value=1.2e-11 Score=103.31 Aligned_cols=52 Identities=35% Similarity=0.866 Sum_probs=45.9
Q ss_pred CCCCCCcccccccccCCCceEecCCCCcccHhhHHHHHhcCCCCCCCccccc
Q 001043 1114 GLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLG 1165 (1177)
Q Consensus 1114 ~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~CPiCrk~v~ 1165 (1177)
..+..|+||++.+.++...++.++|||.||..|+.+|+..+.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 3567899999997666677889999999999999999998999999999764
No 6
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=1.7e-11 Score=108.68 Aligned_cols=59 Identities=25% Similarity=0.633 Sum_probs=50.1
Q ss_pred ccCCCCCCcccccccccCCCceEecCCCCcccHhhHHHHHhcCCCCCCCccccccccccc
Q 001043 1112 EKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMAVLH 1171 (1177)
Q Consensus 1112 e~~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~CPiCrk~v~dm~~~~ 1171 (1177)
+...+..|+||++. +.....++.+||||.||..||.+|++.+.+||+||+.+..+...-
T Consensus 11 ~~~~~~~C~IC~~~-~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 69 (74)
T 2ep4_A 11 ELNLHELCAVCLED-FKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQLS 69 (74)
T ss_dssp CCCCSCBCSSSCCB-CCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCSCC
T ss_pred cCCCCCCCcCCCcc-cCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccccccC
Confidence 44557789999999 556667788899999999999999999999999999998766543
No 7
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.14 E-value=2.1e-11 Score=101.87 Aligned_cols=50 Identities=30% Similarity=0.755 Sum_probs=42.8
Q ss_pred CCCCCcccccccccCCCceEecC-CCCcccHhhHHHHHhcCCCCCCCccccc
Q 001043 1115 LETNCPICCDFLFTSSATVRALP-CGHFMHSDCFQAYTCSHYICPICSKSLG 1165 (1177)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~Lp-CGH~fH~~Ci~~wl~~~~~CPiCrk~v~ 1165 (1177)
.+..|+||+++ +..++.+..+| |||.||..|+.+|++.+.+||+||+.+.
T Consensus 4 ~~~~C~IC~~~-~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAE-LEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCC-CCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCcc-ccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 35689999999 45556677787 9999999999999999999999998763
No 8
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.13 E-value=1.5e-11 Score=109.60 Aligned_cols=53 Identities=32% Similarity=0.706 Sum_probs=46.2
Q ss_pred CCCCCCcccccccccCCCceEecCCCCcccHhhHHHHHhcCCCCCCCccccccc
Q 001043 1114 GLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDM 1167 (1177)
Q Consensus 1114 ~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~CPiCrk~v~dm 1167 (1177)
.....|+||++. +...+.++.+||||.||..||.+|++.+.+||+||+.+...
T Consensus 21 ~~~~~C~IC~~~-~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 21 SEQTLCVVCMCD-FESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp SSCCEETTTTEE-CCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred CCCCCCeECCcc-cCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 346789999998 55666788899999999999999999999999999988653
No 9
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=2.6e-11 Score=110.36 Aligned_cols=49 Identities=20% Similarity=0.473 Sum_probs=40.4
Q ss_pred CCCCcccccccccCCCceEec-CCCCcccHhhHHHHHhcCCCCCCCccccc
Q 001043 1116 ETNCPICCDFLFTSSATVRAL-PCGHFMHSDCFQAYTCSHYICPICSKSLG 1165 (1177)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~L-pCGH~fH~~Ci~~wl~~~~~CPiCrk~v~ 1165 (1177)
+..|+||++++ ..++.++.+ +|||.||.+||.+|+..+.+||+||+.+.
T Consensus 26 ~~~C~iC~~~~-~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 26 MDACLRCQAEN-KQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp TSCCTTHHHHT-CTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred hccCccccccc-CCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 56799999884 444445554 69999999999999999999999999875
No 10
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.11 E-value=3.7e-11 Score=105.12 Aligned_cols=53 Identities=30% Similarity=0.763 Sum_probs=45.7
Q ss_pred cCCCCCCcccccccccCCCceEecCCCCcccHhhHHHHHhcCCCCCCCcccccc
Q 001043 1113 KGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1177)
Q Consensus 1113 ~~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~CPiCrk~v~d 1166 (1177)
......|+||++. +.....++.+||||.||..||.+|+..+.+||+||+.+..
T Consensus 11 ~~~~~~C~IC~~~-~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 11 EDTEEKCTICLSI-LEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp TTCCCSBTTTTBC-CCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CCCCCCCeeCCcc-ccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 3456789999998 4556678889999999999999999999999999998753
No 11
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.09 E-value=3.5e-11 Score=111.59 Aligned_cols=52 Identities=31% Similarity=0.830 Sum_probs=45.3
Q ss_pred CCCCCCcccccccccCCCceEecCCCCcccHhhHHHHHhcCCCCCCCcccccc
Q 001043 1114 GLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1177)
Q Consensus 1114 ~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~CPiCrk~v~d 1166 (1177)
..+..|+||++. |..++.++.+||||.||..||.+|+..+.+||+||+.+..
T Consensus 38 ~~~~~C~IC~~~-~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSE-YVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEE-CCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCCcccChh-hcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 346689999998 5566678889999999999999999999999999998753
No 12
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.05 E-value=9.5e-11 Score=104.87 Aligned_cols=52 Identities=35% Similarity=0.851 Sum_probs=45.5
Q ss_pred CCCCCcccccccccCCCceEecCCCCcccHhhHHHHHhcCCCCCCCccccccc
Q 001043 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDM 1167 (1177)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~CPiCrk~v~dm 1167 (1177)
....|+||++. |.....++.++|||.||..||.+|+..+.+||+||+.+...
T Consensus 14 ~~~~C~IC~~~-~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 14 SGLECPVCKED-YALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSCCCTTTTSC-CCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CCCCCeeCCcc-ccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 46789999998 55566778899999999999999999999999999988653
No 13
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.02 E-value=1.4e-10 Score=111.07 Aligned_cols=54 Identities=30% Similarity=0.554 Sum_probs=42.5
Q ss_pred CCCCCCcccccccccCC--------------CceEecCCCCcccHhhHHHHH-----hcCCCCCCCccccccc
Q 001043 1114 GLETNCPICCDFLFTSS--------------ATVRALPCGHFMHSDCFQAYT-----CSHYICPICSKSLGDM 1167 (1177)
Q Consensus 1114 ~~~~~CpICle~lf~s~--------------~~v~~LpCGH~fH~~Ci~~wl-----~~~~~CPiCrk~v~dm 1167 (1177)
..+..||||++++.... ..++.++|||.||..||.+|+ ..+.+||+||+.+...
T Consensus 23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 34578999999963321 234578999999999999999 4578999999988643
No 14
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=98.99 E-value=4e-09 Score=120.70 Aligned_cols=150 Identities=23% Similarity=0.265 Sum_probs=128.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc-----chHHHHHHHHHHHHHHHHHhhccccccchhhHHHh-hhHH
Q 001043 41 KSPILIFLFFHKAIKSELDVLHRAAMAFATNLGGG-----GDINKLLERYHFFRAIYKHHCNAEDEVIFPALDIR-VKNI 114 (1177)
Q Consensus 41 ~~Pi~~~~~~HkAlR~el~~l~~~~~~~~~~~~d~-----~~~~~l~~r~~~L~~~~~~H~~aEDevI~PaL~~R-v~~v 114 (1177)
..|+..|.-=|+.||+.|..|..++..+.. +.. ..+..+.+-+.+|..+-+.|+.-|-++|||.|+.+ ..+.
T Consensus 8 ghpi~~l~~EH~~i~~~l~~l~~~~~~i~~--~~~~~~~~~~~~~l~~~~~~l~~l~~~H~~kEE~~LFP~le~~g~~~p 85 (369)
T 3cax_A 8 GHPLKTLYQENKEIMKDAEMLNLYAKTLAT--TKDERMREEILGVLEEIVSSLRMVGFTHYNREEMLIFPYIERRGLTVI 85 (369)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHTHHHHHTTTCHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccccccchHHHHHHHHHHHHHHHHHHHhhhhhHhhhhHHHHHhCCCCC
Confidence 459999999999999999999999999887 553 57888888899997744267777777999999644 3688
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhhhcCc-hhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhCCHHHHHHHHHHH
Q 001043 115 ARTYSLEHEGESVLFDQLFELLNSSMRNE-ESYRRELASCTGALQTSISQHMSKEEEQVFPLLIEKFSFEEQASLVWQF 192 (1177)
Q Consensus 115 ~~~~~~EH~~~~~lf~~l~~~l~~~~~~~-~~~~~eLa~~l~~l~~~l~qHm~~EE~~v~PLl~~~fS~~E~a~L~~~~ 192 (1177)
+..|..||.++..+++.+.++++.....+ ...++.+...+.++...+.+|+++||.-+||.+.+.||.+||..|..++
T Consensus 86 ~~vM~~eHd~~r~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~Hi~kEe~iLfP~a~~~ls~~dw~~i~~~~ 164 (369)
T 3cax_A 86 ATVLWTKHDEIRAMIKQLAELLRKREEMPWEEFVEKFKAKAGEVAFALSDMVFRENNIFYPTLKALLSEGEWKAIKMQE 164 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHG
T ss_pred CchHHHHhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 99999999999999999999998865333 3446778888888888999999999999999999999999999998864
No 15
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.95 E-value=2.7e-10 Score=99.72 Aligned_cols=53 Identities=26% Similarity=0.600 Sum_probs=44.4
Q ss_pred CCCCCCcccccccccC---CCceEecCCCCcccHhhHHHHHhcCCCCCCCcccccc
Q 001043 1114 GLETNCPICCDFLFTS---SATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1177)
Q Consensus 1114 ~~~~~CpICle~lf~s---~~~v~~LpCGH~fH~~Ci~~wl~~~~~CPiCrk~v~d 1166 (1177)
..+..|+||++.+... ...++.++|||.||..|+.+|+..+.+||+||+.+..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 3467899999985432 3455789999999999999999999999999998864
No 16
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=2.6e-10 Score=99.05 Aligned_cols=51 Identities=27% Similarity=0.618 Sum_probs=42.8
Q ss_pred CCCCCcccccccccC---CCceEecCCCCcccHhhHHHHHhcCCCCCCCccccc
Q 001043 1115 LETNCPICCDFLFTS---SATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLG 1165 (1177)
Q Consensus 1115 ~~~~CpICle~lf~s---~~~v~~LpCGH~fH~~Ci~~wl~~~~~CPiCrk~v~ 1165 (1177)
....|+||++.+... ...++.++|||.||..||.+|+..+.+||+||+.+.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 467899999985432 344578999999999999999999999999999874
No 17
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.93 E-value=4.8e-10 Score=107.56 Aligned_cols=33 Identities=24% Similarity=0.543 Sum_probs=30.5
Q ss_pred ceEecCCCCcccHhhHHHHHhcCCCCCCCcccc
Q 001043 1132 TVRALPCGHFMHSDCFQAYTCSHYICPICSKSL 1164 (1177)
Q Consensus 1132 ~v~~LpCGH~fH~~Ci~~wl~~~~~CPiCrk~v 1164 (1177)
.++.++|||.||..||.+|+..+.+||+||+.+
T Consensus 67 ~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 67 TVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp CEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred eEeecccCcEECHHHHHHHHHcCCcCcCCCCcc
Confidence 467789999999999999999999999999975
No 18
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.93 E-value=5e-10 Score=97.49 Aligned_cols=51 Identities=25% Similarity=0.616 Sum_probs=43.7
Q ss_pred CCCCCcccccccccCCCceEecCCCCcccHhhHHHHHhcCCCCCCCcccccccc
Q 001043 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMA 1168 (1177)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~CPiCrk~v~dm~ 1168 (1177)
.+..|+||++.+ . ++++.+||||.||..|+.+|+..+.+||+||+.+..+.
T Consensus 4 ~~~~C~IC~~~~-~--~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 54 (68)
T 1chc_A 4 VAERCPICLEDP-S--NYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVV 54 (68)
T ss_dssp CCCCCSSCCSCC-C--SCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCEE
T ss_pred CCCCCeeCCccc-c--CCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHhhh
Confidence 457899999984 2 35688999999999999999999999999999987653
No 19
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.92 E-value=3.9e-10 Score=96.47 Aligned_cols=52 Identities=27% Similarity=0.634 Sum_probs=43.5
Q ss_pred CCCCCccccccccc---CCCceEecCCCCcccHhhHHHHHhcCCCCCCCcccccc
Q 001043 1115 LETNCPICCDFLFT---SSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1177)
Q Consensus 1115 ~~~~CpICle~lf~---s~~~v~~LpCGH~fH~~Ci~~wl~~~~~CPiCrk~v~d 1166 (1177)
.+..||||++.+.. ....+..++|||.||..|+.+|+..+.+||+||+.+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence 35689999998543 23445788999999999999999999999999998864
No 20
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=4e-10 Score=98.75 Aligned_cols=54 Identities=30% Similarity=0.590 Sum_probs=45.8
Q ss_pred CCCCCcccccccccCCCceEecCCCCcccHhhHHHHHhcCCCCCCCcccccccccccCC
Q 001043 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMAVLHLP 1173 (1177)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~CPiCrk~v~dm~~~~~~ 1173 (1177)
....|+||++.+ .. +.+||||.||..|+.+|+..+.+||+||+.+......|..
T Consensus 14 ~~~~C~IC~~~~-~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 67 (70)
T 2ecn_A 14 DEEECCICMDGR-AD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANESSGP 67 (70)
T ss_dssp CCCCCSSSCCSC-CS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCCCCCC
T ss_pred CCCCCeeCCcCc-cC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCccccC
Confidence 457899999984 32 6789999999999999999999999999999877665543
No 21
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=2.4e-09 Score=97.40 Aligned_cols=51 Identities=29% Similarity=0.647 Sum_probs=42.0
Q ss_pred CCCCCcccccccccCCCceEecCCCCcccHhhHHHHHhcC---CCCCCCccccc
Q 001043 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSH---YICPICSKSLG 1165 (1177)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~---~~CPiCrk~v~ 1165 (1177)
....||||++.+.......+.++|||.||..|+.+|+..+ .+||+||+.+.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 3568999999854444346778999999999999999875 89999999764
No 22
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=2.1e-09 Score=94.82 Aligned_cols=48 Identities=21% Similarity=0.524 Sum_probs=40.7
Q ss_pred CCCCCcccccccccCCCceEecCCCCcccHhhHHHHHhcCCCCCCCcccccc
Q 001043 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1177)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~CPiCrk~v~d 1166 (1177)
....|+||++.+. + .+.+||||.||..||.+|+..+.+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~---~-~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 14 TVPECAICLQTCV---H-PVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SCCBCSSSSSBCS---S-EEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCccCCcccC---C-CEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 4568999999842 2 3567999999999999999999999999998863
No 23
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=4.1e-09 Score=93.18 Aligned_cols=49 Identities=20% Similarity=0.427 Sum_probs=41.5
Q ss_pred CCCCCcccccccccCCCceEecCCCCcccHhhHHHHHhcCCCCCCCcccccc
Q 001043 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1177)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~CPiCrk~v~d 1166 (1177)
....||||++.+. +++..++|||.||..||.+|+..+.+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 14 PYILCSICKGYLI---DATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62 (72)
T ss_dssp GGGSCTTTSSCCS---SCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred CCCCCCCCChHHH---CcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence 3568999999843 355556999999999999999989999999998864
No 24
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.76 E-value=9.4e-10 Score=107.32 Aligned_cols=50 Identities=24% Similarity=0.600 Sum_probs=0.9
Q ss_pred CCCCCccccccccc--------------CCCceEecCCCCcccHhhHHHHHhcCCCCCCCcccc
Q 001043 1115 LETNCPICCDFLFT--------------SSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSL 1164 (1177)
Q Consensus 1115 ~~~~CpICle~lf~--------------s~~~v~~LpCGH~fH~~Ci~~wl~~~~~CPiCrk~v 1164 (1177)
.+++|+||++++.. ....+..++|||.||..||.+|+..+.+||+||+.+
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp CC--------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCee
Confidence 35789999988532 112344579999999999999999999999999975
No 25
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.76 E-value=6.5e-09 Score=94.39 Aligned_cols=61 Identities=21% Similarity=0.537 Sum_probs=48.3
Q ss_pred CCCCCcccccccccCCCceEec--CCCCcccHhhHHHHHh-cCCCCCCCcccccccccccCCCCCC
Q 001043 1115 LETNCPICCDFLFTSSATVRAL--PCGHFMHSDCFQAYTC-SHYICPICSKSLGDMAVLHLPIPFE 1177 (1177)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~L--pCGH~fH~~Ci~~wl~-~~~~CPiCrk~v~dm~~~~~~~~~~ 1177 (1177)
.+..||||+|++ +. .....+ +|||.|+..|+..+.. .++.||+||+.+......|+.++.|
T Consensus 10 ~~~~CpICle~~-~~-~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~~~~~~~ 73 (78)
T 1e4u_A 10 DPVECPLCMEPL-EI-DDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVYKPLSQE 73 (78)
T ss_dssp CCCBCTTTCCBC-CT-TTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSCCCSCCCS
T ss_pred cCCcCCccCccC-cc-ccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchhhccCCHH
Confidence 457899999984 32 223444 5999999999999874 4688999999999998888887754
No 26
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.75 E-value=4.6e-09 Score=90.93 Aligned_cols=51 Identities=24% Similarity=0.509 Sum_probs=40.4
Q ss_pred CCCCccccc-ccccCCCceEecCCCCcccHhhHHHHHh-cCCCCCCCcccccc
Q 001043 1116 ETNCPICCD-FLFTSSATVRALPCGHFMHSDCFQAYTC-SHYICPICSKSLGD 1166 (1177)
Q Consensus 1116 ~~~CpICle-~lf~s~~~v~~LpCGH~fH~~Ci~~wl~-~~~~CPiCrk~v~d 1166 (1177)
+..||||++ .+.........++|||.||..|+.+|+. ...+||+||+.+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 567999999 6444434446689999999999999964 45789999998863
No 27
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.69 E-value=5.7e-09 Score=103.77 Aligned_cols=47 Identities=30% Similarity=0.753 Sum_probs=40.1
Q ss_pred CCCCcccccccccCCCceEecCCCCcccHhhHHHHHhcCCCCCCCcccccc
Q 001043 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1177)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~CPiCrk~v~d 1166 (1177)
+..||||++.+. + .+.+||||.||..||..|+..+.+||+||+.+..
T Consensus 53 ~~~C~iC~~~~~---~-~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFI---E-AVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCS---S-EEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred cCCCcccCcccC---C-ceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 356999999842 2 3568999999999999999999999999998864
No 28
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=6.7e-09 Score=94.78 Aligned_cols=51 Identities=25% Similarity=0.561 Sum_probs=41.4
Q ss_pred cCCCCCCcccccccccCCCceEecCCC-----CcccHhhHHHHHhcC--CCCCCCccccc
Q 001043 1113 KGLETNCPICCDFLFTSSATVRALPCG-----HFMHSDCFQAYTCSH--YICPICSKSLG 1165 (1177)
Q Consensus 1113 ~~~~~~CpICle~lf~s~~~v~~LpCG-----H~fH~~Ci~~wl~~~--~~CPiCrk~v~ 1165 (1177)
...+..|+||+++ |..++++ ++||+ |+||..||++|+..+ .+||+||..+.
T Consensus 12 ~~~~~~C~IC~~~-~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 12 PSSQDICRICHCE-GDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp CTTSCCCSSSCCC-CCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCCCeEcCcc-ccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 3456789999998 5555555 68996 999999999999765 58999999875
No 29
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=9.5e-09 Score=92.72 Aligned_cols=47 Identities=21% Similarity=0.487 Sum_probs=40.1
Q ss_pred CCCCCcccccccccCCCceEecCCCCcccHhhHHHHHhcCCCCCCCccccc
Q 001043 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLG 1165 (1177)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~CPiCrk~v~ 1165 (1177)
....||||++.+ . ++ +.+||||.||..||.+|+....+||+||+.+.
T Consensus 14 ~~~~C~IC~~~~-~--~p-~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAF-Q--NP-VVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBC-C--SE-EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCcCCCchh-c--Ce-eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 456799999984 2 23 45899999999999999999999999999875
No 30
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=1.4e-08 Score=88.21 Aligned_cols=49 Identities=24% Similarity=0.473 Sum_probs=39.6
Q ss_pred CCCCCcccccccccCCCceEecCCCCcccHhhHHHHH-hcCCCCCCCccccccc
Q 001043 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYT-CSHYICPICSKSLGDM 1167 (1177)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl-~~~~~CPiCrk~v~dm 1167 (1177)
....||||++.+. +++. ++|||.||..||.+|+ ..+.+||+||+.+..-
T Consensus 14 ~~~~C~IC~~~~~---~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 14 DKYKCEKCHLVLC---SPKQ-TECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCEECTTTCCEES---SCCC-CSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred cCCCCCCCChHhc---CeeE-CCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 3567999999842 2333 7999999999999999 5678999999988654
No 31
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.65 E-value=9.6e-09 Score=99.66 Aligned_cols=52 Identities=27% Similarity=0.609 Sum_probs=43.8
Q ss_pred CCCCCcccccccccC---CCceEecCCCCcccHhhHHHHHhcCCCCCCCcccccc
Q 001043 1115 LETNCPICCDFLFTS---SATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1177)
Q Consensus 1115 ~~~~CpICle~lf~s---~~~v~~LpCGH~fH~~Ci~~wl~~~~~CPiCrk~v~d 1166 (1177)
.+..||||++.+... +..++.++|||.||..||.+|+..+.+||+||+.+..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 457899999985332 3445789999999999999999999999999998864
No 32
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.64 E-value=1.5e-08 Score=90.14 Aligned_cols=52 Identities=25% Similarity=0.540 Sum_probs=40.9
Q ss_pred CCCCCcccccccccCCCceEecC-CCCcccHhhHHHHHhcC--CCCCCCcccccccccc
Q 001043 1115 LETNCPICCDFLFTSSATVRALP-CGHFMHSDCFQAYTCSH--YICPICSKSLGDMAVL 1170 (1177)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~Lp-CGH~fH~~Ci~~wl~~~--~~CPiCrk~v~dm~~~ 1170 (1177)
.+..||||++.+. ++ +.+| |||.||..||..|+..+ .+||+||+.+......
T Consensus 14 ~~~~C~IC~~~~~---~p-~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~ 68 (74)
T 2yur_A 14 DELLCLICKDIMT---DA-VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDAL 68 (74)
T ss_dssp GGGSCSSSCCCCT---TC-EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTT
T ss_pred CCCCCcCCChHHh---CC-eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcccc
Confidence 3568999999843 23 4488 99999999999999765 7899999986654443
No 33
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.61 E-value=1.3e-08 Score=95.80 Aligned_cols=47 Identities=21% Similarity=0.491 Sum_probs=40.3
Q ss_pred CCCCcccccccccCCCceEecCCCCcccHhhHHHHHhcC-CCCCCCccccc
Q 001043 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSH-YICPICSKSLG 1165 (1177)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~-~~CPiCrk~v~ 1165 (1177)
+..||||++.+ . +++..++|||.||..||.+|+... .+||+||+.+.
T Consensus 22 ~~~C~IC~~~~-~--~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 22 VFRCFICMEKL-R--DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HTBCTTTCSBC-S--SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCccCCccc-c--CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 56799999984 2 456659999999999999999877 79999999875
No 34
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.61 E-value=2.4e-08 Score=87.90 Aligned_cols=48 Identities=31% Similarity=0.732 Sum_probs=39.1
Q ss_pred CCCCCCcccccccccCCCceEecCCCCcccHhhHHHHHh---cCCCCCCCccccc
Q 001043 1114 GLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTC---SHYICPICSKSLG 1165 (1177)
Q Consensus 1114 ~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~---~~~~CPiCrk~v~ 1165 (1177)
.....||||++.+ . + .+.++|||.||..|+..|+. ...+||+||+.+.
T Consensus 18 ~~~~~C~IC~~~~-~--~-~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 18 QEEVICPICLDIL-Q--K-PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCBCTTTCSBC-S--S-EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred ccCCEeccCCccc-C--C-eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 3467899999974 3 2 44569999999999999996 4678999999875
No 35
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.58 E-value=2.3e-08 Score=93.57 Aligned_cols=48 Identities=21% Similarity=0.584 Sum_probs=40.8
Q ss_pred CCCCcccccccccCCCceEecCCCCcccHhhHHHHHhcCCCCCCCcccccc
Q 001043 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1177)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~CPiCrk~v~d 1166 (1177)
...||||++.+ . +++..++|||.||..|+..|+..+.+||+||+.+..
T Consensus 22 ~~~C~IC~~~~-~--~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYF-N--IAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBC-S--SEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCcccCChhh-C--CcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 46799999984 2 355556999999999999999999999999998864
No 36
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.57 E-value=2.7e-08 Score=94.59 Aligned_cols=49 Identities=20% Similarity=0.553 Sum_probs=41.9
Q ss_pred CCCCCcccccccccCCCceEecCCCCcccHhhHHHHHhcCCCCCCCcccccc
Q 001043 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1177)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~CPiCrk~v~d 1166 (1177)
.+..||||++.+ .+++..++|||.||..||..|+..+.+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~---~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYF---IDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBC---SSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CcCCCccCChHH---hCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 356899999984 2466666999999999999999999999999998864
No 37
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.54 E-value=3.4e-08 Score=95.75 Aligned_cols=53 Identities=26% Similarity=0.600 Sum_probs=43.7
Q ss_pred CCCCCCcccccccccC---CCceEecCCCCcccHhhHHHHHhcCCCCCCCcccccc
Q 001043 1114 GLETNCPICCDFLFTS---SATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1177)
Q Consensus 1114 ~~~~~CpICle~lf~s---~~~v~~LpCGH~fH~~Ci~~wl~~~~~CPiCrk~v~d 1166 (1177)
.....|+||++.+... ....+.++|||.||..|+++|+..+.+||+||+++..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence 3467899999985331 3345778999999999999999999999999998864
No 38
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.51 E-value=4.4e-08 Score=87.51 Aligned_cols=48 Identities=21% Similarity=0.414 Sum_probs=39.8
Q ss_pred CCCCCcccccccccCCCceEecCCCCcccHhhHHHHHhc-CCCCCCCcccccc
Q 001043 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCS-HYICPICSKSLGD 1166 (1177)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~-~~~CPiCrk~v~d 1166 (1177)
.+..||||++.+ . +++ .++|||.|+..||.+|+.. +.+||+||+.+..
T Consensus 7 ~~~~C~IC~~~~-~--~Pv-~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 7 EYFRCPISLELM-K--DPV-IVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSCTTTSCCC-S--SEE-EETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred ccCCCCCccccc-c--CCE-EcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 467899999974 2 344 4699999999999999987 7899999998753
No 39
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.51 E-value=5.2e-08 Score=87.53 Aligned_cols=47 Identities=28% Similarity=0.617 Sum_probs=39.2
Q ss_pred CCCCCcccccccccCCCceEecCCCCcccHhhHHHHHhc------CCCCCCCccccc
Q 001043 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCS------HYICPICSKSLG 1165 (1177)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~------~~~CPiCrk~v~ 1165 (1177)
....||||++.+ . ++ +.+||||.||..|+..|+.. ...||+||+.+.
T Consensus 18 ~~~~C~IC~~~~-~--~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 18 EEVTCPICLELL-K--EP-VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp TTTSCTTTCSCC-S--SC-EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred cCCCCcCCChhh-C--cc-eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 356899999984 2 23 36899999999999999876 788999999876
No 40
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.50 E-value=4.4e-08 Score=99.90 Aligned_cols=48 Identities=38% Similarity=0.692 Sum_probs=40.4
Q ss_pred CCCCcccccccccCCCceEecCCCCcccHhhHHHHHhc-CCCCCCCcccccc
Q 001043 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCS-HYICPICSKSLGD 1166 (1177)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~-~~~CPiCrk~v~d 1166 (1177)
...||||++.+ . +++..++|||.||..||..|+.. +.+||+||+.+..
T Consensus 54 ~~~C~IC~~~~-~--~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDML-K--NTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBC-S--SEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCcccChHh-h--CcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 34799999984 3 36666799999999999999987 7889999998853
No 41
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.50 E-value=2.3e-08 Score=89.22 Aligned_cols=48 Identities=33% Similarity=0.736 Sum_probs=39.2
Q ss_pred CCCCCcccccccccCCCceEecCCCCcccHhhHHHHHhc-------CCCCCCCcccccc
Q 001043 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCS-------HYICPICSKSLGD 1166 (1177)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~-------~~~CPiCrk~v~d 1166 (1177)
.+..||||++.+ .. + +.+||||.||..|+..|+.. ..+||+||+.+..
T Consensus 11 ~~~~C~IC~~~~-~~--p-~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 11 EEVTCPICLELL-TE--P-LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCEETTTTEEC-SS--C-CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cCCCCcCCCccc-CC--e-eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 356799999984 32 3 34899999999999999976 6789999998853
No 42
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=6.1e-08 Score=81.41 Aligned_cols=42 Identities=26% Similarity=0.848 Sum_probs=34.1
Q ss_pred CCCCCcccccccccCCCceEecCCCCcccHhhHHHHH---hcCCCCCCC
Q 001043 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYT---CSHYICPIC 1160 (1177)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl---~~~~~CPiC 1160 (1177)
....|+||++.+.. + +.++|||.||..||.+|+ ..+.+||+|
T Consensus 14 ~~~~C~IC~~~~~~---p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKE---P-VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSS---C-CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCc---c-EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 45689999998432 2 458999999999999994 457889998
No 43
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=7.2e-08 Score=82.77 Aligned_cols=42 Identities=33% Similarity=0.834 Sum_probs=34.4
Q ss_pred CCCCCcccccccccCCCceEecCCCCcccHhhHHHHHh---cCCCCCCC
Q 001043 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTC---SHYICPIC 1160 (1177)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~---~~~~CPiC 1160 (1177)
.+..||||++.+ . ++ +.++|||.||..||.+|+. ...+||+|
T Consensus 19 ~~~~C~IC~~~~-~--~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDIL-Q--KP-VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBC-S--SC-EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCchh-C--Ce-EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 456899999984 2 23 4569999999999999997 46789998
No 44
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.49 E-value=5.7e-08 Score=87.26 Aligned_cols=48 Identities=35% Similarity=0.746 Sum_probs=39.7
Q ss_pred CCCCCcccccccccCCCceEecCCCCcccHhhHHHHHhc------CCCCCCCcccccc
Q 001043 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCS------HYICPICSKSLGD 1166 (1177)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~------~~~CPiCrk~v~d 1166 (1177)
....||||++.+ . + .+.+||||.||..|+..|+.. ..+||+||+.+..
T Consensus 18 ~~~~C~IC~~~~-~--~-p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 18 EEVTCPICLELL-T--Q-PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCTTTCSCC-S--S-CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCCccc-C--C-ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 457899999984 2 2 245799999999999999876 7899999998863
No 45
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.46 E-value=7e-08 Score=93.96 Aligned_cols=47 Identities=26% Similarity=0.639 Sum_probs=38.6
Q ss_pred CCCCcccccccccCCCceEecCCCCcccHhhHHHHHhc-CCCCCCCcccccc
Q 001043 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCS-HYICPICSKSLGD 1166 (1177)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~-~~~CPiCrk~v~d 1166 (1177)
+..||||++.+. ++ +.+||||.||..||..|+.. ..+||+||+.+..
T Consensus 52 ~~~C~IC~~~~~---~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVF---RP-ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCS---SE-EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHc---Cc-EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 467999999843 23 45799999999999999975 4599999998864
No 46
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.42 E-value=8.4e-08 Score=83.55 Aligned_cols=57 Identities=16% Similarity=0.289 Sum_probs=43.7
Q ss_pred ccCCCCCCcccccccccCCCceE-ecCCCCc-ccHhhHHHHHhcCCCCCCCccccccccccc
Q 001043 1112 EKGLETNCPICCDFLFTSSATVR-ALPCGHF-MHSDCFQAYTCSHYICPICSKSLGDMAVLH 1171 (1177)
Q Consensus 1112 e~~~~~~CpICle~lf~s~~~v~-~LpCGH~-fH~~Ci~~wl~~~~~CPiCrk~v~dm~~~~ 1171 (1177)
+...+..|+||++.. .+.+. .+||||. |...|+..|...+.+||+||+.+.+.-..|
T Consensus 4 ~~~~~~~C~IC~~~~---~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~ 62 (64)
T 2vje_A 4 PLNAIEPCVICQGRP---KNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTY 62 (64)
T ss_dssp -CGGGSCCTTTSSSC---SCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEE
T ss_pred CCCCcCCCCcCCCCC---CCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeee
Confidence 344577899999872 22232 2499999 789999999998899999999998755544
No 47
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.37 E-value=1.5e-07 Score=89.41 Aligned_cols=47 Identities=21% Similarity=0.648 Sum_probs=38.1
Q ss_pred CCCCcccccccccCCCceEecCCCCcccHhhHHHHHhcC---CCCCCCcccccc
Q 001043 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSH---YICPICSKSLGD 1166 (1177)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~---~~CPiCrk~v~d 1166 (1177)
...||||++.+ . ++ +.+||||.||..|+..|+..+ .+||+||+.+..
T Consensus 21 ~~~C~IC~~~~-~--~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELI-K--EP-VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCC-S--SC-CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhh-c--Ce-EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 45799999974 2 23 347999999999999999765 489999998763
No 48
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.37 E-value=1.6e-07 Score=86.50 Aligned_cols=47 Identities=26% Similarity=0.588 Sum_probs=37.9
Q ss_pred CCCCCcccccccccCCCceEecC-CCCcccHhhHHHHHhc--CCCCCCCccccc
Q 001043 1115 LETNCPICCDFLFTSSATVRALP-CGHFMHSDCFQAYTCS--HYICPICSKSLG 1165 (1177)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~Lp-CGH~fH~~Ci~~wl~~--~~~CPiCrk~v~ 1165 (1177)
.+..||||++.+. ++ +.+| |||.|+..||..|+.. ..+||+||+.+.
T Consensus 12 ~~~~C~IC~~~~~---~p-~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 12 DELLCLICKDIMT---DA-VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TTTEETTTTEECS---SC-EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCCCCCCChhhc---Cc-eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 3567999998743 23 4578 9999999999999864 368999999873
No 49
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.35 E-value=8.4e-08 Score=92.11 Aligned_cols=47 Identities=32% Similarity=0.821 Sum_probs=38.7
Q ss_pred CCCCcccccccccCCCceEecCCCCcccHhhHHHHHhc-CCCCCCCcccccc
Q 001043 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCS-HYICPICSKSLGD 1166 (1177)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~-~~~CPiCrk~v~d 1166 (1177)
+..||||++.+. ++ +.++|||.||..||..|+.. +.+||+||+.+..
T Consensus 15 ~~~C~iC~~~~~---~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILV---EP-VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCS---SC-EECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCcccC---ce-eEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 467999999853 23 45699999999999999976 6889999998753
No 50
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.33 E-value=1.6e-07 Score=81.54 Aligned_cols=54 Identities=20% Similarity=0.346 Sum_probs=42.6
Q ss_pred CCCCCcccccccccCCCce-EecCCCCc-ccHhhHHHHHhcCCCCCCCccccccccccc
Q 001043 1115 LETNCPICCDFLFTSSATV-RALPCGHF-MHSDCFQAYTCSHYICPICSKSLGDMAVLH 1171 (1177)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v-~~LpCGH~-fH~~Ci~~wl~~~~~CPiCrk~v~dm~~~~ 1171 (1177)
....|+||++.. .+.+ ..+||||. |...|+..|...+.+||+||+.+.+.-..|
T Consensus 6 ~~~~C~IC~~~~---~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~ 61 (63)
T 2vje_B 6 LLKPCSLCEKRP---RDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVF 61 (63)
T ss_dssp GGSBCTTTSSSB---SCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEE
T ss_pred cCCCCcccCCcC---CCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEe
Confidence 467899999862 2222 33599998 999999999988899999999997755544
No 51
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.32 E-value=2.4e-07 Score=93.71 Aligned_cols=47 Identities=28% Similarity=0.695 Sum_probs=38.7
Q ss_pred CCCCcccccccccCCCceEecCCCCcccHhhHHHHHhcC-CCCCCCcccccc
Q 001043 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSH-YICPICSKSLGD 1166 (1177)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~-~~CPiCrk~v~d 1166 (1177)
...||||++.+. +++ .+||||.||..||..|+... .+||+||..+..
T Consensus 78 ~~~C~IC~~~~~---~pv-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 78 SFMCVCCQELVY---QPV-TTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp HTBCTTTSSBCS---SEE-ECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCEeecCChhhc---CCE-EcCCCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 467999999742 334 48999999999999999865 489999998864
No 52
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.30 E-value=2e-07 Score=90.13 Aligned_cols=47 Identities=28% Similarity=0.534 Sum_probs=38.9
Q ss_pred CCCCcccccccccCCCceEecCCCCcccHhhHHHHHhcCC-CCCCCcccccc
Q 001043 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHY-ICPICSKSLGD 1166 (1177)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~-~CPiCrk~v~d 1166 (1177)
...||||++.+. ++ +.++|||.|+..||.+|+..+. +||+||+.+..
T Consensus 18 ~~~C~IC~~~~~---~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 18 KYECPICLMALR---EA-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp GGBCTTTCSBCS---SE-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCcCChhhc---Ce-EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 468999998843 23 4579999999999999997654 99999998865
No 53
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.30 E-value=3e-07 Score=82.82 Aligned_cols=47 Identities=30% Similarity=0.584 Sum_probs=38.7
Q ss_pred CCCCcccccccccCCCceEecCCCCcccHhhHHHHHhcC--CCCCCCccccc
Q 001043 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSH--YICPICSKSLG 1165 (1177)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~--~~CPiCrk~v~ 1165 (1177)
..+|+||.+.+. .+ .+-..|+|.||..||.+|++++ .+||+||+...
T Consensus 15 i~~C~IC~~~i~-~g--~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 15 VKICNICHSLLI-QG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SCBCSSSCCBCS-SS--EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCcCcchhhHcc-cC--CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 578999999853 33 3444999999999999999887 89999998765
No 54
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.26 E-value=3.5e-07 Score=87.86 Aligned_cols=47 Identities=23% Similarity=0.480 Sum_probs=39.3
Q ss_pred CCCCcccccccccCCCceEecCCCCcccHhhHHHHHhc-CCCCCCCcccccc
Q 001043 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCS-HYICPICSKSLGD 1166 (1177)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~-~~~CPiCrk~v~d 1166 (1177)
+..||||++.+ . +++ .++|||.||..||.+|+.. +.+||+||+.+..
T Consensus 23 ~~~C~IC~~~~-~--~p~-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICEHIL-A--DPV-ETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HTBCTTTCSBC-S--SEE-ECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCcHh-c--CcE-EcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 56799999884 2 344 4899999999999999986 7899999998864
No 55
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.21 E-value=3.7e-07 Score=81.48 Aligned_cols=48 Identities=29% Similarity=0.640 Sum_probs=39.1
Q ss_pred CCCCcccccccccCCCceEecCCCCc-ccHhhHHHHHhcCCCCCCCccccccccccc
Q 001043 1116 ETNCPICCDFLFTSSATVRALPCGHF-MHSDCFQAYTCSHYICPICSKSLGDMAVLH 1171 (1177)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~-fH~~Ci~~wl~~~~~CPiCrk~v~dm~~~~ 1171 (1177)
+..|+||++.+. ....+||||. |+..|+..| .+||+||+.+......|
T Consensus 24 ~~~C~iC~~~~~----~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~i~ 72 (74)
T 4ic3_A 24 EKLCKICMDRNI----AIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFKQKIL 72 (74)
T ss_dssp HTBCTTTSSSBC----CEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSEEEECB
T ss_pred CCCCCCCCCCCC----CEEEcCCCChhHHHHhhhcC----ccCCCcCcCccCcEEEe
Confidence 568999998732 3567899999 999999998 78999999997654433
No 56
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.18 E-value=7.8e-07 Score=102.47 Aligned_cols=52 Identities=25% Similarity=0.606 Sum_probs=42.8
Q ss_pred CCCCCcccccccccCCCceEecCCCCcccHhhHHHHHh-cCCCCCCCcccccccccc
Q 001043 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTC-SHYICPICSKSLGDMAVL 1170 (1177)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~-~~~~CPiCrk~v~dm~~~ 1170 (1177)
....|+||++.+ ...+.+||||.||..|+..|+. ...+||+||+.+.....+
T Consensus 331 ~~~~C~ICle~~----~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i 383 (389)
T 2y1n_A 331 TFQLCKICAEND----KDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPI 383 (389)
T ss_dssp SSSBCTTTSSSB----CCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEEC
T ss_pred CCCCCCccCcCC----CCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCceeE
Confidence 346899999873 2356789999999999999998 688999999998764443
No 57
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.13 E-value=5.8e-07 Score=76.02 Aligned_cols=45 Identities=29% Similarity=0.536 Sum_probs=36.1
Q ss_pred CCCCCCcccccccccCCCceEecCCCCcccHhhHHHHHhcCCCCCCCccccc
Q 001043 1114 GLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLG 1165 (1177)
Q Consensus 1114 ~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~CPiCrk~v~ 1165 (1177)
.....|+||++.+ .. .+.+||||.|+..|+..| ..+||+||+.+.
T Consensus 4 ~~~~~C~IC~~~~-~~---p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEA-KC---PKLLPCLHTLCSGCLEAS---GMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSC-BC---CSCSTTSCCSBTTTCSSS---SSSCSSCCSSSS
T ss_pred ccCCCceEeCCcc-CC---eEEcCCCCcccHHHHccC---CCCCCcCCcEee
Confidence 3466899999974 32 356899999999999873 678999999875
No 58
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.11 E-value=6.8e-07 Score=86.30 Aligned_cols=45 Identities=24% Similarity=0.514 Sum_probs=37.2
Q ss_pred CCCCcccccccccCCCceEecCCCCcccHhhHHHHHhcCCCCCCCccccc
Q 001043 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLG 1165 (1177)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~CPiCrk~v~ 1165 (1177)
+..||||++.+ . +++...+|||.|+..||..|+. ..||+||+.+.
T Consensus 22 ~~~C~IC~~~~-~--~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNIL-R--EPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCC-S--SCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred CCCCCCCChHh-h--CccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 57899999874 2 3444449999999999999997 78999999874
No 59
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.09 E-value=1.4e-06 Score=80.02 Aligned_cols=47 Identities=19% Similarity=0.176 Sum_probs=39.7
Q ss_pred CCCCCcccccccccCCCceEecCCCCcccHhhHHHHHhcCCCCCCCccccc
Q 001043 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLG 1165 (1177)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~CPiCrk~v~ 1165 (1177)
.+-.||||++.| . ++ +.++|||.|...||.+|+..+.+||+||..+.
T Consensus 13 ~~~~CpI~~~~m-~--dP-V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 59 (85)
T 2kr4_A 13 DEFRDPLMDTLM-T--DP-VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLT 59 (85)
T ss_dssp TTTBCTTTCSBC-S--SE-EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred hheECcccCchh-c--CC-eECCCCCEECHHHHHHHHhcCCCCCCCcCCCC
Confidence 357899999874 2 34 45789999999999999998999999999875
No 60
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.04 E-value=1.6e-06 Score=82.09 Aligned_cols=47 Identities=21% Similarity=0.241 Sum_probs=39.7
Q ss_pred CCCCCcccccccccCCCceEecCCCCcccHhhHHHHHhcCCCCCCCccccc
Q 001043 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLG 1165 (1177)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~CPiCrk~v~ 1165 (1177)
.+-.||||++.| . ++| .+||||.|...||..|+..+.+||+||..+.
T Consensus 28 ~~~~CpI~~~~m-~--dPV-~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 74 (100)
T 2kre_A 28 DEFRDPLMDTLM-T--DPV-RLPSGTIMDRSIILRHLLNSPTDPFNRQTLT 74 (100)
T ss_dssp TTTBCTTTCSBC-S--SEE-EETTTEEEEHHHHHHHTTSCSBCSSSCCBCC
T ss_pred HhhCCcCccCcc-c--CCe-ECCCCCEEchHHHHHHHHcCCCCCCCCCCCC
Confidence 357899999874 2 344 4789999999999999998999999999875
No 61
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.03 E-value=3e-06 Score=74.75 Aligned_cols=51 Identities=24% Similarity=0.560 Sum_probs=41.5
Q ss_pred CCCCCcccccccccCCCceEecCCCCc-ccHhhHHHHHhcCCCCCCCcccccccccccCC
Q 001043 1115 LETNCPICCDFLFTSSATVRALPCGHF-MHSDCFQAYTCSHYICPICSKSLGDMAVLHLP 1173 (1177)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~-fH~~Ci~~wl~~~~~CPiCrk~v~dm~~~~~~ 1173 (1177)
....|+||++.. ..++.+||||. |...|+.. ..+||+||+.+......|.+
T Consensus 14 ~~~~C~IC~~~~----~~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~~~~i~~~ 65 (68)
T 2ea5_A 14 NSKDCVVCQNGT----VNWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQESFALSGP 65 (68)
T ss_dssp CSSCCSSSSSSC----CCCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCCEECCCSS
T ss_pred CCCCCCCcCcCC----CCEEEECCCChhhhHHHHhc----CCCCCCCCcchhceEEeecC
Confidence 467899999862 34678999999 99999984 47899999999887666654
No 62
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.02 E-value=2.5e-06 Score=76.11 Aligned_cols=48 Identities=29% Similarity=0.635 Sum_probs=37.4
Q ss_pred CCCCcccccccccCCCceEecCCCCc-ccHhhHHHHHhcCCCCCCCccccccccccc
Q 001043 1116 ETNCPICCDFLFTSSATVRALPCGHF-MHSDCFQAYTCSHYICPICSKSLGDMAVLH 1171 (1177)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~-fH~~Ci~~wl~~~~~CPiCrk~v~dm~~~~ 1171 (1177)
...|+||++.+ . ..+.+||||. |+..|+.. ...||+||+.+......|
T Consensus 25 ~~~C~IC~~~~-~---~~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~~~~i~ 73 (75)
T 2ecg_A 25 EKLCKICMDRN-I---AIVFVPCGHLVTCKQCAEA----VDKCPMCYTVITFKQKIF 73 (75)
T ss_dssp HHSCSSSCSSC-C---CBCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCCCCBCC
T ss_pred CCCCCcCCCCC-C---CEEEecCCCHHHHHHHhhC----CCCCccCCceecCcEEEe
Confidence 45799999873 2 3456899999 99999964 378999999998754433
No 63
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.00 E-value=1.1e-06 Score=88.11 Aligned_cols=46 Identities=24% Similarity=0.415 Sum_probs=37.5
Q ss_pred CCCCCcccccccccCCCceEecCCCCcccHhhHHHHHhcC-CCCCCCcccc
Q 001043 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSH-YICPICSKSL 1164 (1177)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~-~~CPiCrk~v 1164 (1177)
.+-.||||++.+. ++ +.++|||.|+..||.+|+... .+||+||+.+
T Consensus 30 ~~~~C~IC~~~~~---~p-v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 30 AKYLCSACRNVLR---RP-FQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GGGBCTTTCSBCS---SE-EECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCcCCCCCChhhc---Cc-EECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 3567999999743 34 447999999999999999765 4899999965
No 64
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.00 E-value=2.7e-06 Score=80.30 Aligned_cols=47 Identities=19% Similarity=0.155 Sum_probs=39.9
Q ss_pred CCCCCcccccccccCCCceEecCCC-CcccHhhHHHHHhcCCCCCCCccccc
Q 001043 1115 LETNCPICCDFLFTSSATVRALPCG-HFMHSDCFQAYTCSHYICPICSKSLG 1165 (1177)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCG-H~fH~~Ci~~wl~~~~~CPiCrk~v~ 1165 (1177)
.+-.||||++.| . ++| .++|| |.|.+.||.+|+..+.+||+||..+.
T Consensus 21 ~~~~CpI~~~~m-~--dPV-~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~ 68 (98)
T 1wgm_A 21 DEFLDPIMSTLM-C--DPV-VLPSSRVTVDRSTIARHLLSDQTDPFNRSPLT 68 (98)
T ss_dssp TTTBCTTTCSBC-S--SEE-ECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCC
T ss_pred HhcCCcCccccc-c--CCe-ECCCCCeEECHHHHHHHHHhCCCCCCCCCCCC
Confidence 356899999874 2 344 48999 99999999999998999999999875
No 65
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.96 E-value=2.3e-06 Score=77.57 Aligned_cols=52 Identities=25% Similarity=0.637 Sum_probs=42.0
Q ss_pred CCCCcccccccccCCCceEecCCCCc-ccHhhHHHHHhcCCCCCCCcccccccccccCCCC
Q 001043 1116 ETNCPICCDFLFTSSATVRALPCGHF-MHSDCFQAYTCSHYICPICSKSLGDMAVLHLPIP 1175 (1177)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~-fH~~Ci~~wl~~~~~CPiCrk~v~dm~~~~~~~~ 1175 (1177)
+..|+||++.. ..+..+||||. |...|+..| ..||+||+.+......|.|..
T Consensus 18 ~~~C~IC~~~~----~~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~i~~p~~ 70 (79)
T 2yho_A 18 AMLCMVCCEEE----INSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEHVQHVYLPTH 70 (79)
T ss_dssp HTBCTTTSSSB----CCEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCEEEECBCTTC
T ss_pred CCEeEEeCccc----CcEEEECCCCHHHHHHHHHhc----CcCCCCCchhhCeEEEEeCcc
Confidence 46799999873 24677899999 999999877 389999999988777676543
No 66
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.93 E-value=2.1e-06 Score=96.66 Aligned_cols=53 Identities=21% Similarity=0.499 Sum_probs=39.4
Q ss_pred cCCCCCCcccccccccCCC-c---eEecCCCCcccHhhHHHHHhcC-----------CCCCCCccccc
Q 001043 1113 KGLETNCPICCDFLFTSSA-T---VRALPCGHFMHSDCFQAYTCSH-----------YICPICSKSLG 1165 (1177)
Q Consensus 1113 ~~~~~~CpICle~lf~s~~-~---v~~LpCGH~fH~~Ci~~wl~~~-----------~~CPiCrk~v~ 1165 (1177)
.....+|+||++.+.+++. + ....+|||.||..|+.+|+++. ++||.||+.|.
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 3456789999998554222 1 1235899999999999999652 56999999664
No 67
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.82 E-value=9.6e-06 Score=70.07 Aligned_cols=49 Identities=22% Similarity=0.445 Sum_probs=37.7
Q ss_pred ccCCCCCCcccccccccCCCceEecCCC--C---cccHhhHHHHHhc--CCCCCCCcccc
Q 001043 1112 EKGLETNCPICCDFLFTSSATVRALPCG--H---FMHSDCFQAYTCS--HYICPICSKSL 1164 (1177)
Q Consensus 1112 e~~~~~~CpICle~lf~s~~~v~~LpCG--H---~fH~~Ci~~wl~~--~~~CPiCrk~v 1164 (1177)
|......|.||++. .+++. ++||. | +||..|+.+|+.. +.+||+|+..+
T Consensus 2 e~~~~~~CrIC~~~---~~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~ 57 (60)
T 1vyx_A 2 EDEDVPVCWICNEE---LGNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVY 57 (60)
T ss_dssp TTCSCCEETTTTEE---CSCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCCCCEeEEeecC---CCCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCee
Confidence 34556789999987 23334 58975 4 9999999999864 68899999865
No 68
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=97.81 E-value=6.3e-06 Score=84.27 Aligned_cols=47 Identities=30% Similarity=0.585 Sum_probs=38.7
Q ss_pred CCCCcccccccccCCCceEecCCCCcccHhhHHHHHhcC-CCCCCCcccccc
Q 001043 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSH-YICPICSKSLGD 1166 (1177)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~-~~CPiCrk~v~d 1166 (1177)
.-.||||++.+. +++ .++|||.|+..||.+|+... .+||+||+.+..
T Consensus 18 ~~~C~IC~~~~~---~pv-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 18 KYECPICLMALR---EAV-QTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp GGBCTTTCSBCS---SEE-ECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCChhhc---CcE-ECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 567999999853 344 48999999999999999754 599999998865
No 69
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.72 E-value=1.4e-05 Score=74.48 Aligned_cols=46 Identities=28% Similarity=0.537 Sum_probs=36.5
Q ss_pred CCCCCcccccccccCCCceEecCCCCcccHhhHHHHHhcC------CCCCC--Cccc
Q 001043 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSH------YICPI--CSKS 1163 (1177)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~------~~CPi--Crk~ 1163 (1177)
.+-.||||++.| . ++|..-.|||.|.+.||.+|+..+ .+||+ |++.
T Consensus 6 ~~~~CPI~~~~~-~--dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEM-K--KPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBC-S--SEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchh-c--CCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 456799999874 3 466544599999999999999653 68999 9865
No 70
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.72 E-value=1.3e-05 Score=86.90 Aligned_cols=47 Identities=11% Similarity=0.066 Sum_probs=38.0
Q ss_pred CCCCCcccccccccCCCceEecCCCCcccHhhHHHHHhc-CCCCCCCccccc
Q 001043 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCS-HYICPICSKSLG 1165 (1177)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~-~~~CPiCrk~v~ 1165 (1177)
..-.||||++.+ .+|| .+||||.|...||..|+.. +.+||+||..+.
T Consensus 207 ~~~~c~i~~~~~---~dPv-~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 207 DYLCGKISFELM---REPC-ITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp STTBCTTTCSBC---SSEE-ECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred cccCCcCcCCHh---cCCe-ECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 356799999874 2344 5889999999999999976 455999999885
No 71
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.69 E-value=1.4e-05 Score=74.10 Aligned_cols=48 Identities=19% Similarity=0.498 Sum_probs=37.0
Q ss_pred CCCCCcccccccccCCCceEecCCCCcccHhhHHHHHhc--------CCCCCC--Cccc
Q 001043 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCS--------HYICPI--CSKS 1163 (1177)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~--------~~~CPi--Crk~ 1163 (1177)
....|+||+++ +.....+...+|||.|+..|+.+|+.. ..+||. |+..
T Consensus 4 ~~~~C~IC~~~-~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGE-YPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCC-CBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcc-cccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 45689999998 444333444589999999999999752 357999 9998
No 72
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.53 E-value=3.1e-05 Score=84.82 Aligned_cols=48 Identities=31% Similarity=0.646 Sum_probs=40.6
Q ss_pred CCCCCcccccccccCCCceEecCCCCcccHhhHHHHHhcC--CCCCC--Cccccc
Q 001043 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSH--YICPI--CSKSLG 1165 (1177)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~--~~CPi--Crk~v~ 1165 (1177)
.+..||||++.| .+||+...|||.|.+.||.+|+..+ .+||+ |++.+.
T Consensus 180 ~el~CPIcl~~f---~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 180 IELTCPITCKPY---EAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp CCSBCTTTSSBC---SSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred eeeECcCccCcc---cCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 467899999984 5688878999999999999998754 57999 999764
No 73
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.49 E-value=4.5e-05 Score=79.56 Aligned_cols=46 Identities=11% Similarity=0.070 Sum_probs=37.2
Q ss_pred CCCCcccccccccCCCceEecCCCCcccHhhHHHHHhcC-CCCCCCccccc
Q 001043 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSH-YICPICSKSLG 1165 (1177)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~-~~CPiCrk~v~ 1165 (1177)
.-.||||++.| . +||. +||||.|...||..|+..+ .+||+|+..+.
T Consensus 106 ~f~CPI~~elm-~--DPV~-~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 106 YLCGKISFELM-R--EPCI-TPSGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp GGBCTTTCSBC-S--SEEE-CTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred hhcccCccccC-C--CCeE-CCCCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 45799999874 2 3554 5999999999999999764 46999999875
No 74
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.44 E-value=3e-05 Score=88.44 Aligned_cols=48 Identities=29% Similarity=0.715 Sum_probs=38.7
Q ss_pred CCCCcccccccccCCCceEecCCCCc-ccHhhHHHHHhcCCCCCCCccccccccccc
Q 001043 1116 ETNCPICCDFLFTSSATVRALPCGHF-MHSDCFQAYTCSHYICPICSKSLGDMAVLH 1171 (1177)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~-fH~~Ci~~wl~~~~~CPiCrk~v~dm~~~~ 1171 (1177)
+..|+||++.+ . ..+.+||||. |+..|+..| ..||+||..+......|
T Consensus 295 ~~~C~IC~~~~-~---~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~~~~i~ 343 (345)
T 3t6p_A 295 ERTCKVCMDKE-V---SVVFIPCGHLVVCQECAPSL----RKCPICRGIIKGTVRTF 343 (345)
T ss_dssp TCBCTTTSSSB-C---CEEEETTCCEEECTTTGGGC----SBCTTTCCBCCEEEECC
T ss_pred CCCCCccCCcC-C---ceEEcCCCChhHhHHHHhcC----CcCCCCCCCccCeEEee
Confidence 56899999873 2 3566799999 999999988 78999999987654443
No 75
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.34 E-value=7.3e-05 Score=64.68 Aligned_cols=48 Identities=15% Similarity=0.130 Sum_probs=39.9
Q ss_pred CCCCcccccccccCCCceEecCCCCcccHhhHHHHHhcCCCCCCCcccccc
Q 001043 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1177)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~CPiCrk~v~d 1166 (1177)
...||||++.+- ++|...+|||.|-+.||.+|+..+.+||++++.+..
T Consensus 3 ~~~CpIs~~~m~---dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 3 HMLCAISGKVPR---RPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp -CCCTTTCSCCS---SEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred eEEecCCCCCCC---CCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 457999999852 466655999999999999999888899999998753
No 76
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=96.78 E-value=0.00067 Score=64.12 Aligned_cols=50 Identities=24% Similarity=0.471 Sum_probs=40.8
Q ss_pred CCcccccccccCCCceEecCCCCcccHhhHHHHHh-cCCCCCCCcccccccccc
Q 001043 1118 NCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTC-SHYICPICSKSLGDMAVL 1170 (1177)
Q Consensus 1118 ~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~-~~~~CPiCrk~v~dm~~~ 1170 (1177)
-|++|--++ ....+.+||+|+|..+|+..|.+ ...+||+|+..|.+.+..
T Consensus 3 fC~~C~~Pi---~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~~ 53 (101)
T 3vk6_A 3 FCDKCGLPI---KVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQC 53 (101)
T ss_dssp BCTTTCSBC---SEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEEE
T ss_pred ecCccCCCe---EEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeEEe
Confidence 488888664 23467889999999999999975 568899999999887653
No 77
>3u9j_A F-BOX/LRR-repeat protein 5; ubiquitin ligase E3, iron sensor, protein binding; 1.60A {Homo sapiens} PDB: 3u9m_A 3v5x_A 3v5y_A 3v5z_A
Probab=96.49 E-value=0.015 Score=57.46 Aligned_cols=146 Identities=23% Similarity=0.282 Sum_probs=101.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHHHHHhhccccccchhhHHHhhhHHHHHHHhhhh
Q 001043 44 ILIFLFFHKAIKSELDVLHRAAMAFATNLGGGGDINKLLERYHFFRAIYKHHCNAEDEVIFPALDIRVKNIARTYSLEHE 123 (1177)
Q Consensus 44 i~~~~~~HkAlR~el~~l~~~~~~~~~~~~d~~~~~~l~~r~~~L~~~~~~H~~aEDevI~PaL~~Rv~~v~~~~~~EH~ 123 (1177)
+|+|.+-|--+..-..+--.-+-.++- .+..+++.|..-+..--.-++.|-+-||+.|.-.|..|...|..- .-|.
T Consensus 8 vdvF~~PH~RMKqlvg~y~ekLS~tnF--s~n~d~~~lL~sl~~tF~EfK~HEqIENe~I~~~LqqRs~tV~nv--Hsdn 83 (160)
T 3u9j_A 8 VDVFTAPHWRMKQLVGLYCDKLSKTNF--SNNNDFRALLQSLYATFKEFKMHEQIENEYIIGLLQQRSQTIYNV--HSDN 83 (160)
T ss_dssp GCSSHHHHHHHHHHHHHHHHHHHHCCT--TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHCCCSSC--SCCT
T ss_pred cceeeccHHHHHHHHHHHHHHHhhccC--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecc--cCcc
Confidence 567777776555544443333333333 666777877777777777789999999999999999984222111 1123
Q ss_pred hHHHHHHHHHHHHHhhhcCc-h--hHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhCCHHHHHHHHHHHhh
Q 001043 124 GESVLFDQLFELLNSSMRNE-E--SYRRELASCTGALQTSISQHMSKEEEQVFPLLIEKFSFEEQASLVWQFLC 194 (1177)
Q Consensus 124 ~~~~lf~~l~~~l~~~~~~~-~--~~~~eLa~~l~~l~~~l~qHm~~EE~~v~PLl~~~fS~~E~a~L~~~~i~ 194 (1177)
...+.++-+..++..- .+. + .+..+|-.+|.++-.....||..||+..=|+|.++||.+|+.+|-.+-|+
T Consensus 84 kLsemL~L~~kG~~~v-K~e~e~lny~~qLk~~l~~Ft~~flPhMkeEEEVFQPmLMeyFtyeELk~iK~~Vi~ 156 (160)
T 3u9j_A 84 KLSEMLSLFEKGLKNV-KNEYEQLNYAKQLKERLEAFTRDFLPHMKEEEEVFQPMLMEYFTYEELKDIKKKVIA 156 (160)
T ss_dssp THHHHHHHHHHHHHHC-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhc-chHHHHhhHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 3344455455555443 221 1 55678888888888899999999999999999999999999998777654
No 78
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=95.52 E-value=0.0068 Score=65.79 Aligned_cols=46 Identities=30% Similarity=0.598 Sum_probs=33.7
Q ss_pred CCCcccccccccCCCceEecCCCCcccHhhHHHHHhcC--CCCCCCccccc
Q 001043 1117 TNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSH--YICPICSKSLG 1165 (1177)
Q Consensus 1117 ~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~--~~CPiCrk~v~ 1165 (1177)
..|.||.+-+.. ..+--.|+|.||..|+..|++.+ .+||.|+....
T Consensus 181 ~~C~iC~~iv~~---g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 181 KICNICHSLLIQ---GQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp CBCTTTCSBCSS---CEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CcCcchhhHHhC---CcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 457777765432 23333599999999999999764 48999998643
No 79
>3u9j_A F-BOX/LRR-repeat protein 5; ubiquitin ligase E3, iron sensor, protein binding; 1.60A {Homo sapiens} PDB: 3u9m_A 3v5x_A 3v5y_A 3v5z_A
Probab=94.45 E-value=0.19 Score=49.90 Aligned_cols=144 Identities=12% Similarity=0.148 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhh-hhHH--hHHHHH
Q 001043 294 IDEIMLWHNAIKRELNDIAEAARKIQLSGDFSDLSAFNKRLQFIAEVCIFHSIAEDKVIFPAVDVEL-SFAQ--EHAEEE 370 (1177)
Q Consensus 294 id~l~~~HkALRrEL~~L~~~a~~i~~~gd~~~L~~L~~r~~fl~~vl~~Hs~aEDevlFPaL~~r~-~me~--EH~~ie 370 (1177)
+|.+..=|--++.-...--+-+.... -.+-.++..|..-+..--..++.|-.-|++.|--.|..|- +.-. -|....
T Consensus 8 vdvF~~PH~RMKqlvg~y~ekLS~tn-Fs~n~d~~~lL~sl~~tF~EfK~HEqIENe~I~~~LqqRs~tV~nvHsdnkLs 86 (160)
T 3u9j_A 8 VDVFTAPHWRMKQLVGLYCDKLSKTN-FSNNNDFRALLQSLYATFKEFKMHEQIENEYIIGLLQQRSQTIYNVHSDNKLS 86 (160)
T ss_dssp GCSSHHHHHHHHHHHHHHHHHHHHCC-TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHCCCSSCSCCTTHH
T ss_pred cceeeccHHHHHHHHHHHHHHHhhcc-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecccCcchHH
Confidence 45666667666555555555554443 2233355555444444444567798999999999999884 1000 111222
Q ss_pred HHHHHHHHHHHHHHhcCCCCCh-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhCCHHHHHHHHHhHh
Q 001043 371 IQFDKLRCLIESIQSAGANSST-AEFYTKLCSQADLIMASIQKHFRNEEVQVLPLARRHFSPKRQRELLYQSL 442 (1177)
Q Consensus 371 ~l~e~l~~ll~~~~~~~~~~~~-~~~~~eLa~~le~L~~~L~~Hf~~EE~qvfPLl~~~fS~eEq~eL~~~~l 442 (1177)
..+.-|...+.... +... ..+..+|-..+++.......||..||++-=||+.++||.+|...|-.+-+
T Consensus 87 emL~L~~kG~~~vK----~e~e~lny~~qLk~~l~~Ft~~flPhMkeEEEVFQPmLMeyFtyeELk~iK~~Vi 155 (160)
T 3u9j_A 87 EMLSLFEKGLKNVK----NEYEQLNYAKQLKERLEAFTRDFLPHMKEEEEVFQPMLMEYFTYEELKDIKKKVI 155 (160)
T ss_dssp HHHHHHHHHHHHCC----SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcc----hHHHHhhHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 23333333332221 1101 35567888888999999999999999999999999999999998866544
No 80
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=85.67 E-value=0.19 Score=47.00 Aligned_cols=44 Identities=23% Similarity=0.565 Sum_probs=36.4
Q ss_pred CCCCcccccccccCCCceEecCCC-CcccHhhHHHHHhcCCCCCCCccccc
Q 001043 1116 ETNCPICCDFLFTSSATVRALPCG-HFMHSDCFQAYTCSHYICPICSKSLG 1165 (1177)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCG-H~fH~~Ci~~wl~~~~~CPiCrk~v~ 1165 (1177)
..+|-.|... .. ..+.|. |++...|+.-.|+.+..||||.+.+.
T Consensus 28 ~~nCKsCWf~---~k---~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLP 72 (99)
T 2ko5_A 28 PQFCKSCWFE---NK---GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLP 72 (99)
T ss_dssp CCCCCSSCSC---CS---SEEECSSCEEEHHHHHHTCSSSSEETTTTEECC
T ss_pred cccChhhccc---cC---CeeeecchhhHHHHHHHHHhhccCCcccCCcCC
Confidence 4579999854 22 245787 99999999999999999999999885
No 81
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=74.30 E-value=1.2 Score=40.79 Aligned_cols=49 Identities=20% Similarity=0.621 Sum_probs=30.4
Q ss_pred ccccccC-------CcccCcccccccCCCCCCccccceeeccccCccccCCCCCCCCCCCCcccceEeccccc
Q 001043 999 LRAACCG-------KLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCSGLSMAKYYCGICK 1064 (1177)
Q Consensus 999 l~~~cC~-------k~y~Cr~CHde~~~H~~~r~~~~~~~C~~C~~~q~~~~~C~~~~C~~~~~a~Y~C~~C~ 1064 (1177)
+.||.|+ ++|.|..|+.. + .....|..|+....+ |.. | |.. .|||..|+
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~C~~~-----~----~~~afCPeCgq~Le~---lkA--C-GA~--~yFC~~C~ 58 (81)
T 2jrp_A 3 ITCPVCHHALERNGDTAHCETCAKD-----F----SLQALCPDCRQPLQV---LKA--C-GAV--DYFCQNGH 58 (81)
T ss_dssp CCCSSSCSCCEECSSEEECTTTCCE-----E----EEEEECSSSCSCCCE---EEE--T-TEE--EECCTTTT
T ss_pred CCCCCCCCccccCCCceECcccccc-----C----CCcccCcchhhHHHH---HHh--c-CCc--CeeeccCC
Confidence 3466664 35567777653 1 224488888876655 554 4 543 89998886
No 82
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=73.12 E-value=0.64 Score=44.77 Aligned_cols=87 Identities=20% Similarity=0.479 Sum_probs=50.2
Q ss_pred CCCCccccCC------CCCccccccCCccccc-----cccc--------ccccccccCCCCCCcccccccccCCCceEec
Q 001043 1076 PFCNLCRVGR------GLGVDFFHCMTCNCCL-----AKKL--------VDHKCREKGLETNCPICCDFLFTSSATVRAL 1136 (1177)
Q Consensus 1076 ~~CgiCrvg~------gl~~~~fhC~~C~~C~-----s~~l--------~~H~C~e~~~~~~CpICle~lf~s~~~v~~L 1136 (1177)
+.|+||.-|. |-+++...|+.|+.-+ .... ..=.|.+= ..|.||... ...+.-+.--
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C---~~C~~C~~~-~~~~~ll~Cd 77 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIEC---KSCILCGTS-ENDDQLLFCD 77 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGG---CCCTTTTCC-TTTTTEEECS
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCcccc---CccCccccc-CCCCceEEcC
Confidence 4566676543 3345788888887543 3321 11122221 258888764 1222222223
Q ss_pred CCCCcccHhhHHHHHh----cCCCCCCCcccccc
Q 001043 1137 PCGHFMHSDCFQAYTC----SHYICPICSKSLGD 1166 (1177)
Q Consensus 1137 pCGH~fH~~Ci~~wl~----~~~~CPiCrk~v~d 1166 (1177)
.|...||..|+.+=+. ..-.||.|...+.+
T Consensus 78 ~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~~ 111 (114)
T 2kwj_A 78 DCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKE 111 (114)
T ss_dssp SSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHHH
T ss_pred CCCccccccccCCCccCCCCCCeECccccchhhc
Confidence 8889999999986443 24569999876554
No 83
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=72.93 E-value=1.3 Score=42.48 Aligned_cols=73 Identities=21% Similarity=0.451 Sum_probs=41.2
Q ss_pred CCccccccCCcccccccc-c------------ccccccccCCCCCCcccccccccCCCceEecCCCCcccHhhHHHHHh-
Q 001043 1087 LGVDFFHCMTCNCCLAKK-L------------VDHKCREKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTC- 1152 (1177)
Q Consensus 1087 l~~~~fhC~~C~~C~s~~-l------------~~H~C~e~~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~- 1152 (1177)
-+++...|+.|+.-+-.. + ..=.|.+= ..|.||.+.-...+.-+.--.|...||..|+++-+.
T Consensus 22 ~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C---~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~ 98 (112)
T 3v43_A 22 KPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIEC---KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTR 98 (112)
T ss_dssp CCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTT---CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSS
T ss_pred CchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccC---CccccccCcCCCccceEEcCCCCCeeecccCCCCCCC
Confidence 345778888886554221 1 11122221 158888764111122122237889999999976543
Q ss_pred ---cCCCCCCCcc
Q 001043 1153 ---SHYICPICSK 1162 (1177)
Q Consensus 1153 ---~~~~CPiCrk 1162 (1177)
..-.||.|+.
T Consensus 99 ~P~~~W~C~~C~~ 111 (112)
T 3v43_A 99 MPKGMWICQICRP 111 (112)
T ss_dssp CCSSCCCCTTTSC
T ss_pred CCCCCeECCCCCC
Confidence 2467999985
No 84
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=71.11 E-value=1.7 Score=41.29 Aligned_cols=45 Identities=20% Similarity=0.346 Sum_probs=28.6
Q ss_pred CCcccccccccCCCceEecCCCCcccHhhHHHHHh----cCCCCCCCccc
Q 001043 1118 NCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTC----SHYICPICSKS 1163 (1177)
Q Consensus 1118 ~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~----~~~~CPiCrk~ 1163 (1177)
.|.||... .....-+.--.|...||..|+++-+. ....||.|..-
T Consensus 56 ~C~~C~~~-~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQS-GEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCC-SCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCcc-CCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 47777764 11112222248889999999986543 34669988764
No 85
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=67.43 E-value=2.9 Score=42.33 Aligned_cols=41 Identities=24% Similarity=0.537 Sum_probs=28.4
Q ss_pred CCCCcccccccccCCCceEecCCCCcccHhhHHHHHhcCCCCCCCcccccc
Q 001043 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1177)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~CPiCrk~v~d 1166 (1177)
...|..|.+.|... +.+ +..-|..||..|+ +|-.|++.+..
T Consensus 65 ~~~C~~C~~~I~~~-~~v-~~a~~~~~H~~CF--------~C~~C~~~L~~ 105 (169)
T 2rgt_A 65 GTKCAACQLGIPPT-QVV-RRAQDFVYHLHCF--------ACVVCKRQLAT 105 (169)
T ss_dssp SCBCTTTCCBCCTT-SEE-EEETTEEEEGGGC--------BCTTTCCBCCT
T ss_pred cccccccccccCCC-cEE-EEcCCceEeeCCC--------cCCCCCCCCCC
Confidence 45788998886532 222 2234789999986 78899988864
No 86
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=67.42 E-value=1.5 Score=41.31 Aligned_cols=49 Identities=24% Similarity=0.592 Sum_probs=33.3
Q ss_pred ccccccCC-------cccCcccccccCCCCCCccccceeeccccCccccCCCCCCCCCCCCcccceEeccccc
Q 001043 999 LRAACCGK-------LFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCSGLSMAKYYCGICK 1064 (1177)
Q Consensus 999 l~~~cC~k-------~y~Cr~CHde~~~H~~~r~~~~~~~C~~C~~~q~~~~~C~~~~C~~~~~a~Y~C~~C~ 1064 (1177)
+.||.|+. +|.|..|+.. -.....|..|+.+-.+-+.| | -+.|||..|+
T Consensus 33 ~~CP~Cq~eL~~~g~~~hC~~C~~~---------f~~~a~CPdC~q~LevLkAC------G--AvdYFC~~ch 88 (101)
T 2jne_A 33 LHCPQCQHVLDQDNGHARCRSCGEF---------IEMKALCPDCHQPLQVLKAC------G--AVDYFCQHGH 88 (101)
T ss_dssp CBCSSSCSBEEEETTEEEETTTCCE---------EEEEEECTTTCSBCEEEEET------T--EEEEEETTTT
T ss_pred ccCccCCCcceecCCEEECccccch---------hhccccCcchhhHHHHHHHh------c--CcchhhccCC
Confidence 66777753 5567777653 13477888888776654444 3 4789999997
No 87
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=66.39 E-value=2.9 Score=38.59 Aligned_cols=34 Identities=18% Similarity=0.419 Sum_probs=25.6
Q ss_pred CCCCcccccccccCCCceEe-cCCCCcccHhhHHH-HH
Q 001043 1116 ETNCPICCDFLFTSSATVRA-LPCGHFMHSDCFQA-YT 1151 (1177)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~-LpCGH~fH~~Ci~~-wl 1151 (1177)
+..|+||.+..+ ..++.. +.|||.|...|+.. |.
T Consensus 3 e~~C~~C~~~~~--~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 3 KVLCQFCDQDPA--QDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCBCTTCCSSSC--CBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCcCCCCCCC--CCceEECCcCChHHhHHHCHHHhc
Confidence 467999997532 234443 99999999999998 53
No 88
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=64.60 E-value=4.9 Score=40.39 Aligned_cols=89 Identities=15% Similarity=0.337 Sum_probs=51.4
Q ss_pred CCcccCCCCCccccCC----CCCccccccCCccccccccc-ccccccccCCCCCCcccccccccCCCceEecCCCCcccH
Q 001043 1070 RVVYHCPFCNLCRVGR----GLGVDFFHCMTCNCCLAKKL-VDHKCREKGLETNCPICCDFLFTSSATVRALPCGHFMHS 1144 (1177)
Q Consensus 1070 k~~yHC~~CgiCrvg~----gl~~~~fhC~~C~~C~s~~l-~~H~C~e~~~~~~CpICle~lf~s~~~v~~LpCGH~fH~ 1144 (1177)
...++|.-||.-...- -....+|+-..|..|...-+ ....-.+.+.+..|.||.+. ++-+--=.|--.||.
T Consensus 12 ~~~i~Ct~Cg~~~~~~q~~~~~~HPll~v~~C~~C~~~y~~~~~~~d~Dg~~d~C~vC~~G----G~LlcCD~Cpr~Fh~ 87 (142)
T 2lbm_A 12 HGIVSCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSDDISRDSDGMDEQCRWCAEG----GNLICCDFCHNAFCK 87 (142)
T ss_dssp CCCCBCTTTCSBSTTTCSSSEEEETTTTEEEEHHHHHHHHHSCCCBCTTSCBCSCSSSCCC----SSEEECSSSCCEEEH
T ss_pred cCCCEecCCCCccccccccchhcCCCccccccHHHHHHHhcCCceecCCCCCCeecccCCC----CcEEeCCCCCCeeeH
Confidence 4556677776543100 00112344444555554222 22233456678899999974 332222378899999
Q ss_pred hhHHHHHh-----------cCCCCCCCcc
Q 001043 1145 DCFQAYTC-----------SHYICPICSK 1162 (1177)
Q Consensus 1145 ~Ci~~wl~-----------~~~~CPiCrk 1162 (1177)
.|++.=+. ..-.||+|+-
T Consensus 88 ~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 88 KCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp HHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred hhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 99996442 3467999985
No 89
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=62.37 E-value=3.7 Score=33.83 Aligned_cols=29 Identities=45% Similarity=0.930 Sum_probs=17.2
Q ss_pred cceEecccc-ccccCC----CCcccCCCCCcccc
Q 001043 1055 MAKYYCGIC-KFFDDE----RVVYHCPFCNLCRV 1083 (1177)
Q Consensus 1055 ~a~Y~C~~C-~l~dd~----k~~yHC~~CgiCrv 1083 (1177)
|+-|-|-.| +-|+++ -+-.+||+||+=-+
T Consensus 1 ~~iY~C~rCg~~fs~~el~~lP~IrCpyCGyrii 34 (48)
T 4ayb_P 1 MAVYRCGKCWKTFTDEQLKVLPGVRCPYCGYKII 34 (48)
T ss_dssp ----CCCCTTTTCCCCCSCCCSSSCCTTTCCSCE
T ss_pred CcEEEeeccCCCccHHHHhhCCCcccCccCcEEE
Confidence 456777777 346665 46678999996433
No 90
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=58.79 E-value=9.6 Score=38.95 Aligned_cols=47 Identities=21% Similarity=0.460 Sum_probs=32.1
Q ss_pred CCCCCcccccccccCCCceEecCCCCcccHhhHHHHHhcCCCCCCCccccccccccc
Q 001043 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMAVLH 1171 (1177)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~CPiCrk~v~dm~~~~ 1171 (1177)
....|..|.+.|......+. .-|..||..|+ +|-.|++.+.+-..||
T Consensus 118 f~~kC~~C~~~I~~~~~v~~--a~~~~~H~~CF--------~C~~C~~~L~~g~~f~ 164 (182)
T 2jtn_A 118 FGTKCAACQLGIPPTQVVRR--AQDFVYHLHCF--------ACVVCKRQLATGDEFY 164 (182)
T ss_dssp TSCCCTTTCCCCCSSCCCCE--ETTEECCTTTC--------CCTTTCCCCCTTCEEE
T ss_pred cccccccCCCccCCCceEEe--cCCCCEEeCCC--------cCCCCCCCCCCCCceE
Confidence 45679999998654322222 34789999986 7999999986433343
No 91
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=55.24 E-value=4.1 Score=37.32 Aligned_cols=69 Identities=26% Similarity=0.494 Sum_probs=44.9
Q ss_pred cCCCCCccccCCCCCccccccCCcccccccccccccccccCCCCCCcccccccccCCCceEecCCCCcccHhhHHHHHhc
Q 001043 1074 HCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKLVDHKCREKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCS 1153 (1177)
Q Consensus 1074 HC~~CgiCrvg~gl~~~~fhC~~C~~C~s~~l~~H~C~e~~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~ 1153 (1177)
.||.|+-=-...+ .++||..|+.=+... .-||-|..+|- +.-.||-.
T Consensus 4 ~CP~C~~~l~~~~---~~~~C~~C~~~~~~~------------afCPeCgq~Le------~lkACGA~------------ 50 (81)
T 2jrp_A 4 TCPVCHHALERNG---DTAHCETCAKDFSLQ------------ALCPDCRQPLQ------VLKACGAV------------ 50 (81)
T ss_dssp CCSSSCSCCEECS---SEEECTTTCCEEEEE------------EECSSSCSCCC------EEEETTEE------------
T ss_pred CCCCCCCccccCC---CceECccccccCCCc------------ccCcchhhHHH------HHHhcCCc------------
Confidence 4566653322221 378888888866653 47999987742 12278854
Q ss_pred CCCCCCCcccccccccccCCCC
Q 001043 1154 HYICPICSKSLGDMAVLHLPIP 1175 (1177)
Q Consensus 1154 ~~~CPiCrk~v~dm~~~~~~~~ 1175 (1177)
+|.|+-|..-+..-.+.|...|
T Consensus 51 ~yFC~~C~~LiSkkrv~f~~~~ 72 (81)
T 2jrp_A 51 DYFCQNGHGLISKKRVNFVISD 72 (81)
T ss_dssp EECCTTTTCCCCTTSSEEEECC
T ss_pred CeeeccCCCEeecceEEEEecc
Confidence 7889999888877777666544
No 92
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=54.84 E-value=7.6 Score=38.41 Aligned_cols=68 Identities=16% Similarity=0.459 Sum_probs=42.6
Q ss_pred cccCCccccccccc-ccccccccCCCCCCcccccccccCCCceEecCCCCcccHhhHHHHH-----------hcCCCCCC
Q 001043 1092 FHCMTCNCCLAKKL-VDHKCREKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYT-----------CSHYICPI 1159 (1177)
Q Consensus 1092 fhC~~C~~C~s~~l-~~H~C~e~~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl-----------~~~~~CPi 1159 (1177)
|.-..|..|...-+ ....-.+...+..|.||.+. ++-+--=.|-..||..|+..-+ ...-.|++
T Consensus 32 l~v~~C~~C~~~y~~~~~~~d~Dg~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~ 107 (129)
T 3ql9_A 32 LQVLICKNCFKYYMSDDISRDSDGMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYI 107 (129)
T ss_dssp TCCEEEHHHHHHHHHSCCCBCTTSCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTT
T ss_pred cCceeCHhHHhhhhccccccCCCCCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCC
Confidence 33455555654333 33444566778889999864 2211112678999999999642 23467999
Q ss_pred Cccc
Q 001043 1160 CSKS 1163 (1177)
Q Consensus 1160 Crk~ 1163 (1177)
|+-.
T Consensus 108 C~~~ 111 (129)
T 3ql9_A 108 CHPE 111 (129)
T ss_dssp TCCG
T ss_pred cCCH
Confidence 9764
No 93
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=54.56 E-value=2 Score=41.08 Aligned_cols=45 Identities=16% Similarity=0.335 Sum_probs=26.7
Q ss_pred CCCcccccccccCCCce-EecCCCCcccHhhHHHHHh--------cCCCCCCCcc
Q 001043 1117 TNCPICCDFLFTSSATV-RALPCGHFMHSDCFQAYTC--------SHYICPICSK 1162 (1177)
Q Consensus 1117 ~~CpICle~lf~s~~~v-~~LpCGH~fH~~Ci~~wl~--------~~~~CPiCrk 1162 (1177)
..|+.|.+. ......+ .---|...||..|...... ..+.||.|+.
T Consensus 60 ~~c~~c~~~-~~~~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~ 113 (117)
T 4bbq_A 60 GEVDQNEET-QDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQ 113 (117)
T ss_dssp CCBCCHHHH-CCGGGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC-
T ss_pred Ccccccccc-cccCcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcC
Confidence 345566543 2222222 2357899999999875432 2377999985
No 94
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=54.25 E-value=2.2 Score=39.33 Aligned_cols=61 Identities=18% Similarity=0.425 Sum_probs=43.0
Q ss_pred CCCCcccccccccCCCceEe-cCCCCcccHhhHHHHHh--------cCCCCCCCcccccccccccCCCCC
Q 001043 1116 ETNCPICCDFLFTSSATVRA-LPCGHFMHSDCFQAYTC--------SHYICPICSKSLGDMAVLHLPIPF 1176 (1177)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~-LpCGH~fH~~Ci~~wl~--------~~~~CPiCrk~v~dm~~~~~~~~~ 1176 (1177)
+..|.||...-......+.. =.|...||..|+..=+. ..-.||.|......+.......||
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~~~~~~~~~~ 85 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMAQKNQKSGP 85 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCSTTCCCCSCC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhhhccccCCCCC
Confidence 56799998751111122222 28899999999986542 356799999999888888777776
No 95
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=53.24 E-value=4.9 Score=41.93 Aligned_cols=49 Identities=20% Similarity=0.561 Sum_probs=33.2
Q ss_pred CCCcccccccccCCCc---e-EecCCCCcccHhhHHHH------Hh-----cCCCCCCCcccccc
Q 001043 1117 TNCPICCDFLFTSSAT---V-RALPCGHFMHSDCFQAY------TC-----SHYICPICSKSLGD 1166 (1177)
Q Consensus 1117 ~~CpICle~lf~s~~~---v-~~LpCGH~fH~~Ci~~w------l~-----~~~~CPiCrk~v~d 1166 (1177)
..||||... +..++. . .--.|..-||..|..-= +. ..|.||.|+..-+.
T Consensus 3 ~~CpiC~k~-Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~ 66 (183)
T 3lqh_A 3 NFCPLCDKC-YDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPA 66 (183)
T ss_dssp CBCTTTCCB-CTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSC
T ss_pred CcCCCCcCc-cCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCH
Confidence 469999877 444431 2 22478899999998531 11 27999999987553
No 96
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=51.92 E-value=3.2 Score=35.56 Aligned_cols=49 Identities=20% Similarity=0.506 Sum_probs=33.0
Q ss_pred CCCCCcccccccccCCCceEecCCCCcccHhhHHHHH-----hcCCCCCCCccc
Q 001043 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYT-----CSHYICPICSKS 1163 (1177)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl-----~~~~~CPiCrk~ 1163 (1177)
....|+||.........-+.--.|..-||..|+.--. ...+.||.|+..
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 4567999997732223233334788999999987432 146899999864
No 97
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=51.92 E-value=11 Score=34.70 Aligned_cols=34 Identities=18% Similarity=0.523 Sum_probs=24.0
Q ss_pred CCCCCcccccccccCCCceEecCCCCcccHhhHHHH
Q 001043 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAY 1150 (1177)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~w 1150 (1177)
.+..|+||-. |+..+...-=-||-.||..|+.+-
T Consensus 14 ~D~~C~VC~~--~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCEV--WTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTCC--CCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCcccCcccc--ccccceeccccccccccHhhcccc
Confidence 4778999974 454432222346899999999996
No 98
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.33 E-value=7.8 Score=33.22 Aligned_cols=40 Identities=30% Similarity=0.671 Sum_probs=27.4
Q ss_pred CCCCcccccccccCCCceEecCCCCcccHhhHHHHHhcCCCCCCCccccc
Q 001043 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLG 1165 (1177)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~CPiCrk~v~ 1165 (1177)
...|+.|.+.+...+..+..+ |..||..|+ +|-.|++.+.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~--~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVVAL--DRVFHVGCF--------VCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEECS--SSEECTTTC--------BCSSSCCBCT
T ss_pred CCCCccCCCccCCCceEEEEC--CCeEcccCC--------cccccCCcCC
Confidence 456888888865433333333 788888875 5888888884
No 99
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=50.73 E-value=9.3 Score=33.40 Aligned_cols=44 Identities=25% Similarity=0.504 Sum_probs=31.3
Q ss_pred CCCCcccccccccCCCceEecCCCCcccHhhHHHHHhc----CCCCCCCccc
Q 001043 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCS----HYICPICSKS 1163 (1177)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~----~~~CPiCrk~ 1163 (1177)
...|.||.+. ++-+.--.|...||..|++..+.. .-.||.|+..
T Consensus 12 ~~~C~vC~~~----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 12 GARCGVCGDG----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TCCCTTTSCC----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCcCCCCCC----CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 4569999753 332333378899999999887643 4679999764
No 100
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=47.10 E-value=4.5 Score=40.67 Aligned_cols=26 Identities=23% Similarity=0.800 Sum_probs=19.2
Q ss_pred CCCccccCCCCCccccccCCccccccc
Q 001043 1077 FCNLCRVGRGLGVDFFHCMTCNCCLAK 1103 (1177)
Q Consensus 1077 ~CgiCrvg~gl~~~~fhC~~C~~C~s~ 1103 (1177)
+|+||..-. ..++.|||+.||+|---
T Consensus 85 ~C~~C~l~d-~~k~~yHC~~CgiCR~G 110 (143)
T 2dkt_A 85 YCSICHLFD-KDKRQYHCESCGICRIG 110 (143)
T ss_dssp ECSSSCCEE-CSSSEEEETTTTEEEES
T ss_pred Eeceeeccc-CCCceecCCCCCceecc
Confidence 455777652 35689999999999754
No 101
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=45.07 E-value=6.7 Score=40.37 Aligned_cols=39 Identities=28% Similarity=0.655 Sum_probs=28.0
Q ss_pred CCcccccccccCCCceEecCCCCcccHhhHHHHHhcCCCCCCCcccccc
Q 001043 1118 NCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1177)
Q Consensus 1118 ~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~CPiCrk~v~d 1166 (1177)
.|+.|...+......+. .-|+.||..|+ +|-.|++.+..
T Consensus 71 ~C~~C~~~I~~~e~~i~--a~~~~~H~~CF--------~C~~C~~~L~~ 109 (188)
T 1rut_X 71 ACSACGQSIPASELVMR--AQGNVYHLKCF--------TCSTCRNRLVP 109 (188)
T ss_dssp ECTTTCCEECTTSEEEE--ETTEEECGGGC--------BCTTTCCBCCT
T ss_pred ccccCCCccccCcEEEE--cCCCEEeCCCC--------eECCCCCCCCC
Confidence 69999998754322222 34899999984 78899988853
No 102
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}
Probab=44.19 E-value=1.1e+02 Score=35.12 Aligned_cols=79 Identities=10% Similarity=0.162 Sum_probs=46.7
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhhccccccchhhHHHhhhHHHHHH-----------Hh-hhhhHHHHHHHHHHHHHhhh
Q 001043 73 GGGGDINKLLERYHFFRAIYKHHCNAEDEVIFPALDIRVKNIARTY-----------SL-EHEGESVLFDQLFELLNSSM 140 (1177)
Q Consensus 73 ~d~~~~~~l~~r~~~L~~~~~~H~~aEDevI~PaL~~Rv~~v~~~~-----------~~-EH~~~~~lf~~l~~~l~~~~ 140 (1177)
-|...++++..+++.+...+| +=..--|+++..-|+.....+ .. .-..-+.+++.|...|..+.
T Consensus 45 ~~~~~~~~~q~~le~~~~~lr----~~~~k~~~~~~~~~~~~~~~~~~~~~~il~~v~~~~~~~~~~~~~~l~~~l~~l~ 120 (369)
T 3rfy_A 45 IDNKAIREVQKPLEDITDSLK----IAGVKALDSVERNVRQASRTLQQGKSIIVAGFAESKKDHGNEMIEKLEAGMQDML 120 (369)
T ss_dssp CCCHHHHHHHHHHHTHHHHTT----SCSTTTHHHHHHHHHHHHHHHSCHHHHHTTTCCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHHHHhc----cccCCCchHHHHHHHHHHHHHhhCHHHHHhhcChhhHHHHHHHHHHHHHHHHHHH
Confidence 466688888888877766554 212233888876663332222 22 22334568888888888886
Q ss_pred cC-----ch---hHHHHHHHHHH
Q 001043 141 RN-----EE---SYRRELASCTG 155 (1177)
Q Consensus 141 ~~-----~~---~~~~eLa~~l~ 155 (1177)
.. .+ ..++++-..|+
T Consensus 121 ~~~~~~d~~~~~~~~~~~l~~v~ 143 (369)
T 3rfy_A 121 KIVEDRKRDAVAPKQKEILKYVG 143 (369)
T ss_dssp CCCSSCCCSSSGGGHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHH
Confidence 43 11 44566666666
No 103
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.76 E-value=12 Score=32.47 Aligned_cols=43 Identities=21% Similarity=0.556 Sum_probs=30.9
Q ss_pred CCCCCcccccccccCCCceEecCCCCcccHhhHHHHHhcCCCCCCCccccccc
Q 001043 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDM 1167 (1177)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~CPiCrk~v~dm 1167 (1177)
....|+.|.+.++..+..+..+ |..||.+|+ +|-.|++.+.+-
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a~--~~~~H~~CF--------~C~~C~~~L~~~ 52 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNSN--GELYHEQCF--------VCAQCFQQFPEG 52 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEET--TEEECTTTC--------CCTTTCCCCGGG
T ss_pred CCCCchhcCCccCCCceEEEeC--ccEeccccC--------eECCCCCCCCCC
Confidence 4567999999876444333344 788999885 688899988754
No 104
>3agt_A Hemerythrin-like domain protein DCRH; metal binding protein, oxygen binding, DIIRON, four-helix BU; 1.40A {Desulfovibrio vulgaris} PDB: 2awy_A 2avk_A 3agu_A 2awc_A
Probab=42.38 E-value=38 Score=32.84 Aligned_cols=50 Identities=18% Similarity=0.108 Sum_probs=36.1
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001043 361 SFAQEHAEEEIQFDKLRCLIESIQSAGANSSTAEFYTKLCSQADLIMASIQKHFRNEEVQV 421 (1177)
Q Consensus 361 ~me~EH~~ie~l~e~l~~ll~~~~~~~~~~~~~~~~~eLa~~le~L~~~L~~Hf~~EE~qv 421 (1177)
.+..+|++.-.++++|..++.. + . ..++...++.|..-...||..||.-.
T Consensus 18 ~ID~qHk~L~~lin~l~~a~~~----~------~-~~~i~~~l~~L~~y~~~HF~~EE~lM 67 (136)
T 3agt_A 18 SIDTQHKRLVDYINDLYRAARR----R------D-MDKAREVFDALKNYAVEHFGYEERLF 67 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT----T------C-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHc----C------c-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667787777777776655432 1 1 35677788899999999999999643
No 105
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=41.82 E-value=19 Score=41.55 Aligned_cols=85 Identities=22% Similarity=0.473 Sum_probs=55.9
Q ss_pred ccCCCCCccccCCCCCccccccCCccccccccc-ccccccccCCCCCCcccccccccCCCceEec--CCCCcccHhhHHH
Q 001043 1073 YHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKL-VDHKCREKGLETNCPICCDFLFTSSATVRAL--PCGHFMHSDCFQA 1149 (1177)
Q Consensus 1073 yHC~~CgiCrvg~gl~~~~fhC~~C~~C~s~~l-~~H~C~e~~~~~~CpICle~lf~s~~~v~~L--pCGH~fH~~Ci~~ 1149 (1177)
++|-.||--.+- .-...|...-|..|...-+ ......+.+.+.-|-||.+. ++-+.-= .|...|+..||+.
T Consensus 51 ~~C~~CG~~~~~--~~HPl~~v~lC~~Ck~~y~~~~f~~D~DG~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~ 124 (386)
T 2pv0_B 51 DICICCGSLQVH--TQHPLFEGGICAPCKDKFLDALFLYDDDGYQSYCSICCSG----ETLLICGNPDCTRCYCFECVDS 124 (386)
T ss_dssp GSBTTTCCSCCC--SBCSSBSSBCCHHHHHHHHTTTTCBCSSSSBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHH
T ss_pred ceeCCCCCcCcc--ccCCCcCcchhhHHHHHHhccCcccCCCCCcccceEcCCC----CeEEEeCCCCCCcchHHHHHHH
Confidence 455555543221 1124555667777776544 56667788889999999974 3333333 7999999999999
Q ss_pred HHh----------cCCCCCCCccc
Q 001043 1150 YTC----------SHYICPICSKS 1163 (1177)
Q Consensus 1150 wl~----------~~~~CPiCrk~ 1163 (1177)
.+. ..-.|=+|.-.
T Consensus 125 n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 125 LVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp HTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred hcChhHHHHhhccCCceEEEcCCc
Confidence 872 24568788754
No 106
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=41.11 E-value=6.8 Score=34.57 Aligned_cols=49 Identities=20% Similarity=0.497 Sum_probs=32.5
Q ss_pred CCCCcccccccccCCCceEecCCCCcccHhhHHHHHh----cCCCCCCCccccc
Q 001043 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTC----SHYICPICSKSLG 1165 (1177)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~----~~~~CPiCrk~v~ 1165 (1177)
...|+||... .....-+.-=.|.-.||..|+..-.. ..+.||.|+..+.
T Consensus 18 ~~~C~~C~~~-~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 18 IWICPGCNKP-DDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EECBTTTTBC-CSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CcCCCCCCCC-CCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 3469999876 22112222237889999999976432 4688999987654
No 107
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.84 E-value=15 Score=31.50 Aligned_cols=41 Identities=27% Similarity=0.503 Sum_probs=29.7
Q ss_pred CCCCccccccccc--CCCceEecCCCCcccHhhHHHHHhcCCCCCCCcccccc
Q 001043 1116 ETNCPICCDFLFT--SSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1177)
Q Consensus 1116 ~~~CpICle~lf~--s~~~v~~LpCGH~fH~~Ci~~wl~~~~~CPiCrk~v~d 1166 (1177)
...|+.|.+.|.. ....+.. -|..||.+|+ +|-.|++.+.+
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a--~~~~wH~~CF--------~C~~C~~~L~~ 47 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISF--EERQWHNDCF--------NCKKCSLSLVG 47 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEEC--SSCEECTTTC--------BCSSSCCBCTT
T ss_pred CCCCcCCCccccCCCCcceEEE--CCcccCcccC--------EeccCCCcCCC
Confidence 4679999998764 3333333 4889999886 68899998863
No 108
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=40.44 E-value=13 Score=32.26 Aligned_cols=42 Identities=29% Similarity=0.560 Sum_probs=30.7
Q ss_pred CCCCCccccccccc---CCCceEecCCCCcccHhhHHHHHhcCCCCCCCcccccc
Q 001043 1115 LETNCPICCDFLFT---SSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1177)
Q Consensus 1115 ~~~~CpICle~lf~---s~~~v~~LpCGH~fH~~Ci~~wl~~~~~CPiCrk~v~d 1166 (1177)
....|+.|.+.+.. ....+..+ |..||..|+ +|-.|++.+.+
T Consensus 14 ~~~~C~~C~~~I~~~g~~~~~~~a~--~~~~H~~CF--------~C~~C~~~L~~ 58 (77)
T 2egq_A 14 VAKKCAGCKNPITGFGKGSSVVAYE--GQSWHDYCF--------HCKKCSVNLAN 58 (77)
T ss_dssp CCCCCSSSCCCCCCCSSCCCEEEET--TEEEETTTC--------BCSSSCCBCTT
T ss_pred hCccCcccCCcccCCCCCceeEEEC--cceeCcccC--------EehhcCCCCCC
Confidence 34679999998765 33444444 789999885 68999998864
No 109
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=40.19 E-value=12 Score=30.77 Aligned_cols=26 Identities=35% Similarity=1.080 Sum_probs=18.2
Q ss_pred cceEecccccc-ccC---------C-CCcccCCCCCc
Q 001043 1055 MAKYYCGICKF-FDD---------E-RVVYHCPFCNL 1080 (1177)
Q Consensus 1055 ~a~Y~C~~C~l-~dd---------~-k~~yHC~~Cgi 1080 (1177)
|.+|-|.+|.+ ||. + .+-|.||.||.
T Consensus 2 m~~y~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 2 MQKYVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGV 38 (46)
T ss_dssp CCCEEETTTCCEECGGGGTTCCGGGSCTTCBCTTTCC
T ss_pred CCEEECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCC
Confidence 77899999987 552 2 33567887774
No 110
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.23 E-value=13 Score=31.64 Aligned_cols=41 Identities=27% Similarity=0.710 Sum_probs=29.1
Q ss_pred CCCCcccccccccCCCceEecCCCCcccHhhHHHHHhcCCCCCCCcccccc
Q 001043 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1177)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~CPiCrk~v~d 1166 (1177)
...|+.|.+.+...+..+ ..-|..||.+|+ +|-.|++.+.+
T Consensus 5 ~~~C~~C~~~I~~~~~~~--~a~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKL--EYGGQTWHEHCF--------LCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSCEE--CSTTCCEETTTC--------BCTTTCCBTTT
T ss_pred CCCCccCCCccccCccEE--EECccccCcccC--------eECCCCCcCCC
Confidence 457999998875433323 334889999885 68889988865
No 111
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.03 E-value=16 Score=31.17 Aligned_cols=42 Identities=24% Similarity=0.653 Sum_probs=29.2
Q ss_pred CCCCcccccccccCCCceEecCCCCcccHhhHHHHHhcCCCCCCCccccccc
Q 001043 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDM 1167 (1177)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~CPiCrk~v~dm 1167 (1177)
...|+.|.+.+...+..+..+ |..||.+|+ +|-.|++.+.+-
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~--~~~~H~~CF--------~C~~C~~~L~~~ 46 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKMEYK--GSSWHETCF--------ICHRCQQPIGTK 46 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEEET--TEEEETTTT--------CCSSSCCCCCSS
T ss_pred CCCCccCCCcccCCceEEEEC--cCeecccCC--------cccccCCccCCC
Confidence 357899998876433334333 788898875 688898887653
No 112
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.02 E-value=17 Score=31.83 Aligned_cols=42 Identities=26% Similarity=0.649 Sum_probs=29.0
Q ss_pred CCCCcccccccccCCCceEecCCCCcccHhhHHHHHhcCCCCCCCccccccc
Q 001043 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDM 1167 (1177)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~CPiCrk~v~dm 1167 (1177)
...|+.|.+.+...+..+..+ |..||.+|+ +|-.|++.+.+-
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a~--~~~~H~~CF--------~C~~C~~~L~~~ 56 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEYK--GTVWHKDCF--------TCSNCKQVIGTG 56 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEECS--SCEEETTTC--------CCSSSCCCCTTS
T ss_pred CCcCccCCcccccCceEEEEC--ccccccccC--------chhhCCCccCCC
Confidence 467899988875433333333 788998875 688898888653
No 113
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=37.03 E-value=16 Score=34.86 Aligned_cols=41 Identities=27% Similarity=0.525 Sum_probs=29.9
Q ss_pred CCCCCcccccccccCCCceEecCCCCccc--HhhHHHHHhcCCCCCCCccccc
Q 001043 1115 LETNCPICCDFLFTSSATVRALPCGHFMH--SDCFQAYTCSHYICPICSKSLG 1165 (1177)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH--~~Ci~~wl~~~~~CPiCrk~v~ 1165 (1177)
....|+.|...|...+..+.. -|..|| .+|+ +|-.|++.+.
T Consensus 62 ~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~~~CF--------~C~~C~~~l~ 104 (126)
T 2xqn_T 62 HAVVCQGCHNAIDPEVQRVTY--NNFSWHASTECF--------LCSCCSKCLI 104 (126)
T ss_dssp SCCBCTTTCSBCCTTSCEEEE--TTEEEESSTTTS--------BCTTTCCBCT
T ss_pred cCccCcccCCcCCcCceEEEC--CCCEeeCCCCCc--------CcCCCCCccC
Confidence 456799999987543333333 488999 8884 6889999886
No 114
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=36.11 E-value=12 Score=27.85 Aligned_cols=30 Identities=27% Similarity=0.741 Sum_probs=20.3
Q ss_pred CCCCCcccccccccCCCceEecCCCCcccHhhH
Q 001043 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCF 1147 (1177)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci 1147 (1177)
+...|+.|...++.. +.+. .=|..||..|+
T Consensus 2 m~~~C~~C~k~Vy~~-Ek~~--~~g~~~Hk~CF 31 (31)
T 1zfo_A 2 MNPNCARCGKIVYPT-EKVN--CLDKFWHKACF 31 (31)
T ss_dssp CCCBCSSSCSBCCGG-GCCC--SSSSCCCGGGC
T ss_pred CCCcCCccCCEEecc-eeEE--ECCeEecccCC
Confidence 345799998877654 3333 34788999885
No 115
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.38 E-value=18 Score=31.66 Aligned_cols=43 Identities=19% Similarity=0.383 Sum_probs=28.8
Q ss_pred CCCCcccccccccCCCceEecCCCCcccHhhHHHHHhcCCCCCCCcccccccccc
Q 001043 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMAVL 1170 (1177)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~CPiCrk~v~dm~~~ 1170 (1177)
...|+.|.+.|. +..+. .-|..||.+|+ +|-.|++.+.+-..|
T Consensus 15 ~~~C~~C~~~I~--~~~~~--a~~~~~H~~CF--------~C~~C~~~L~~g~~f 57 (81)
T 1x6a_A 15 GEFCHGCSLLMT--GPFMV--AGEFKYHPECF--------ACMSCKVIIEDGDAY 57 (81)
T ss_dssp SCBCTTTCCBCC--SCCBC--CTTCCBCTTSC--------BCTTTCCBCCTTSCE
T ss_pred CCcCccCCCCcC--ceEEE--ECCceeccccC--------CccCCCCccCCCCcE
Confidence 346888988875 23233 34788898875 588899888653333
No 116
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=35.06 E-value=15 Score=31.13 Aligned_cols=43 Identities=21% Similarity=0.565 Sum_probs=30.4
Q ss_pred CCCCCcccccccccCCCceEecCCCCcccHhhHHHHHhcCCCCCCCccccccc
Q 001043 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDM 1167 (1177)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~CPiCrk~v~dm 1167 (1177)
....|+.|...+......+.. =|..||..|+ +|-.|++.+.+.
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~~--~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEEE--TTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CCccchhcCccccCCceEEEe--CcCeeCcCCC--------cccCCCCCCCCC
Confidence 456799999986543322233 3788999887 688999988765
No 117
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=34.62 E-value=15 Score=35.14 Aligned_cols=9 Identities=33% Similarity=0.951 Sum_probs=4.5
Q ss_pred CCcccHhhH
Q 001043 1139 GHFMHSDCF 1147 (1177)
Q Consensus 1139 GH~fH~~Ci 1147 (1177)
|..||..|+
T Consensus 29 ~~~~H~~CF 37 (123)
T 2l3k_A 29 DKVYHLECF 37 (123)
T ss_dssp SCCCCTTTC
T ss_pred CcccccccC
Confidence 455555543
No 118
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=34.59 E-value=16 Score=30.92 Aligned_cols=14 Identities=43% Similarity=1.201 Sum_probs=10.0
Q ss_pred cceEecccccc-ccC
Q 001043 1055 MAKYYCGICKF-FDD 1068 (1177)
Q Consensus 1055 ~a~Y~C~~C~l-~dd 1068 (1177)
|.+|.|.+|.+ ||.
T Consensus 1 m~~y~C~~CGyvYd~ 15 (55)
T 2v3b_B 1 MRKWQCVVCGFIYDE 15 (55)
T ss_dssp CCEEEETTTCCEEET
T ss_pred CCcEEeCCCCeEECC
Confidence 56788888876 443
No 119
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.33 E-value=19 Score=31.27 Aligned_cols=41 Identities=27% Similarity=0.481 Sum_probs=29.7
Q ss_pred CCCCccccccccc--CCCceEecCCCCcccHhhHHHHHhcCCCCCCCcccccc
Q 001043 1116 ETNCPICCDFLFT--SSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1177)
Q Consensus 1116 ~~~CpICle~lf~--s~~~v~~LpCGH~fH~~Ci~~wl~~~~~CPiCrk~v~d 1166 (1177)
...|+.|.+.|.. ....+.. -|..||.+|+ +|-.|++.+.+
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~a--~~~~wH~~CF--------~C~~C~~~L~~ 47 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFICF--QDSQWHSECF--------NCGKCSVSLVG 47 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEEE--TTEEEEGGGC--------BCTTTCCBCSS
T ss_pred CCCCccCCCcccCCCCceeEEE--CCcccCcccC--------ChhhCCCcCCC
Confidence 4579999998764 3343433 4788999886 68889988863
No 120
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.16 E-value=22 Score=31.17 Aligned_cols=41 Identities=27% Similarity=0.579 Sum_probs=28.2
Q ss_pred CCCCcccccccccCCCceEecCCCCcccHhhHHHHHhcCCCCCCCcccccc
Q 001043 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1177)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~CPiCrk~v~d 1166 (1177)
...|+.|...|...+..+.. =|..||..|+ +|-.|++.+.+
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~ 55 (82)
T 2ehe_A 15 ANTCAECQQLIGHDSRELFY--EDRHFHEGCF--------RCCRCQRSLAD 55 (82)
T ss_dssp SCBCTTTCCBCCSSCCBCCC--SSCCCBTTTS--------BCTTTCCBCSS
T ss_pred CCcCccCCCccccCcEEEEe--CCccccccCC--------eecCCCCccCC
Confidence 45799999887533332222 3788999885 58889988863
No 121
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=34.06 E-value=19 Score=33.01 Aligned_cols=15 Identities=27% Similarity=0.802 Sum_probs=11.1
Q ss_pred ccceEecccccc-ccC
Q 001043 1054 SMAKYYCGICKF-FDD 1068 (1177)
Q Consensus 1054 ~~a~Y~C~~C~l-~dd 1068 (1177)
.+.+|.|.+|.+ ||.
T Consensus 24 em~~y~C~vCGyvYD~ 39 (81)
T 2kn9_A 24 DYKLFRCIQCGFEYDE 39 (81)
T ss_dssp CCCEEEETTTCCEEET
T ss_pred CcceEEeCCCCEEEcC
Confidence 477899999976 453
No 122
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=33.63 E-value=17 Score=32.33 Aligned_cols=13 Identities=31% Similarity=0.864 Sum_probs=10.4
Q ss_pred ccceEeccccccc
Q 001043 1054 SMAKYYCGICKFF 1066 (1177)
Q Consensus 1054 ~~a~Y~C~~C~l~ 1066 (1177)
.|.+|.|.+|.+.
T Consensus 4 ~m~~y~C~vCGyi 16 (70)
T 1dx8_A 4 DEGKYECEACGYI 16 (70)
T ss_dssp CSSCEEETTTCCE
T ss_pred CCceEEeCCCCEE
Confidence 5788999999763
No 123
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=32.30 E-value=13 Score=31.31 Aligned_cols=39 Identities=21% Similarity=0.409 Sum_probs=28.7
Q ss_pred CCCCcccccccccCCCceEecCCCCcccHhhHHHHHhcCCCCCCCcccccc
Q 001043 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1177)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~CPiCrk~v~d 1166 (1177)
...|+.|.+.+. ++. +..=|..||.+|+ +|-.|++.+.+
T Consensus 5 ~~~C~~C~~~I~--~~~--~~a~~~~~H~~CF--------~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIE--GRV--VNAMGKQWHVEHF--------VCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECC--SCE--ECCTTSBEETTTC--------BCTTTCCBCSS
T ss_pred CCCCcccCCEec--ceE--EEECccccccCcC--------EECCCCCCCCC
Confidence 456999999875 332 3345889999885 68899998865
No 124
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=31.83 E-value=20 Score=34.30 Aligned_cols=39 Identities=26% Similarity=0.538 Sum_probs=28.5
Q ss_pred CCcccccccccCCCceEecCCCCcccHhhHHHHHhcCCCCCCCcccccc
Q 001043 1118 NCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1177)
Q Consensus 1118 ~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~CPiCrk~v~d 1166 (1177)
.|+.|.+.+......+.. =|..||..|+ +|-.|++.+..
T Consensus 68 ~C~~C~~~I~~~e~~~~a--~~~~~H~~CF--------~C~~C~~~L~~ 106 (131)
T 2xjy_A 68 LCASCDKRIRAYEMTMRV--KDKVYHLECF--------KCAACQKHFCV 106 (131)
T ss_dssp ECTTTCCEECTTSEEEEE--TTEEEEGGGC--------BCTTTCCBCCT
T ss_pred ChhhcCCccCccceeEee--CCceECccCc--------ccCCCCCCCCC
Confidence 799999987543322233 4899999984 79999998853
No 125
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.39 E-value=23 Score=30.08 Aligned_cols=40 Identities=28% Similarity=0.859 Sum_probs=28.9
Q ss_pred CCCCcccccccccCCCceEecCCCCcccHhhHHHHHhcCCCCCCCccccccc
Q 001043 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDM 1167 (1177)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~CPiCrk~v~dm 1167 (1177)
...|+.|.+.|.. ..+..+ |..||.+|+ +|-.|++.|.+.
T Consensus 5 ~~~C~~C~~~I~~--~~~~a~--~~~~H~~CF--------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 5 SSGCHQCGEFIIG--RVIKAM--NNSWHPECF--------RCDLCQEVLADI 44 (70)
T ss_dssp SSBCSSSCCBCCS--CCEEET--TEEECTTTS--------BCSSSCCBCSSS
T ss_pred CCcCccCCCEecc--eEEEEC--cccccccCC--------EeCCCCCcCCCC
Confidence 4578999988752 334333 788998886 688899888764
No 126
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=31.31 E-value=25 Score=28.58 Aligned_cols=45 Identities=18% Similarity=0.502 Sum_probs=28.7
Q ss_pred CCcccccccccCCCceEecCCCCcccHhhHHHHHh----cCCCCCCCccc
Q 001043 1118 NCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTC----SHYICPICSKS 1163 (1177)
Q Consensus 1118 ~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~----~~~~CPiCrk~ 1163 (1177)
.|.||... ...+.-+.--.|.-.||..|++.=+. ....||.|+..
T Consensus 2 ~C~vC~~~-~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKK-GEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCS-SCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCCCCCCC-CCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 48888864 12222222237889999999975332 34669999764
No 127
>1rij_A E6APN1 peptide; Trp-CAGE, E6-binding domain, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.32.1.1
Probab=31.27 E-value=24 Score=24.88 Aligned_cols=19 Identities=21% Similarity=0.503 Sum_probs=13.6
Q ss_pred HHHHHHHHhc-CCCCCCCcc
Q 001043 234 LRQVIFAWME-GVKVSDKSC 252 (1177)
Q Consensus 234 l~~~~~~w~~-~~~~~~~~~ 252 (1177)
||+++-+||+ |++++.+..
T Consensus 2 lqellgqwlkdggpssgrpp 21 (26)
T 1rij_A 2 LQELLGQWLKDGGPSSGRPP 21 (26)
T ss_dssp HHHHHHHHHHTTGGGSSSCC
T ss_pred HHHHHHHHHHcCCCCCCCCC
Confidence 7999999999 444444443
No 128
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=31.22 E-value=22 Score=31.61 Aligned_cols=25 Identities=24% Similarity=0.510 Sum_probs=12.7
Q ss_pred ceEeccccccc-c-CCCCcccCCCCCc
Q 001043 1056 AKYYCGICKFF-D-DERVVYHCPFCNL 1080 (1177)
Q Consensus 1056 a~Y~C~~C~l~-d-d~k~~yHC~~Cgi 1080 (1177)
-.|.|..|..- + ++.+..+|+.||-
T Consensus 27 v~Y~C~~CG~~~e~~~~d~irCp~CG~ 53 (70)
T 1twf_L 27 LKYICAECSSKLSLSRTDAVRCKDCGH 53 (70)
T ss_dssp CCEECSSSCCEECCCTTSTTCCSSSCC
T ss_pred EEEECCCCCCcceeCCCCCccCCCCCc
Confidence 44666666543 1 1234446666664
No 129
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=29.76 E-value=25 Score=32.04 Aligned_cols=44 Identities=18% Similarity=0.283 Sum_probs=26.2
Q ss_pred CCCcccccccccCCCceEecCCCCcccHhhHHHHHhcCCCCCCCccccc
Q 001043 1117 TNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLG 1165 (1177)
Q Consensus 1117 ~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~CPiCrk~v~ 1165 (1177)
-.|..|...|- . .... ..=|..|...|+.+ .....|..|.+.|.
T Consensus 34 F~C~~C~~~L~-~-~~~~-~~~g~~yC~~cy~~--~~~~~C~~C~~~I~ 77 (101)
T 2cup_A 34 FRCAKCLHPLA-N-ETFV-AKDNKILCNKCTTR--EDSPKCKGCFKAIV 77 (101)
T ss_dssp CCCSSSCCCTT-S-SCCE-EETTEEECHHHHTT--CCCCBCSSSCCBCC
T ss_pred CcccccCCCCC-c-CeeE-CcCCEEEChhHhhh--hcCCccccCCCccc
Confidence 35777777652 2 1121 22366777777633 23567999999887
No 130
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=29.71 E-value=19 Score=33.33 Aligned_cols=17 Identities=29% Similarity=0.784 Sum_probs=12.0
Q ss_pred CcccceEecccccc-ccC
Q 001043 1052 GLSMAKYYCGICKF-FDD 1068 (1177)
Q Consensus 1052 ~~~~a~Y~C~~C~l-~dd 1068 (1177)
+..|.+|.|.+|.+ ||.
T Consensus 30 ~~~m~~y~C~vCGyvYD~ 47 (87)
T 1s24_A 30 GKAYLKWICITCGHIYDE 47 (87)
T ss_dssp --CCCEEEETTTTEEEET
T ss_pred ccCCceEECCCCCeEecC
Confidence 55688999999985 554
No 131
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=29.15 E-value=9.7 Score=33.20 Aligned_cols=48 Identities=17% Similarity=0.388 Sum_probs=30.6
Q ss_pred CCCCCcccccccccCCCceEec-CCCCcccHhhHHHH------Hh----cCCCCCCCcc
Q 001043 1115 LETNCPICCDFLFTSSATVRAL-PCGHFMHSDCFQAY------TC----SHYICPICSK 1162 (1177)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~L-pCGH~fH~~Ci~~w------l~----~~~~CPiCrk 1162 (1177)
....|++|..+......-+.-- .|.--||..|+.-= |. ..+.||.|.+
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~~ 65 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMA 65 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHHC
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCccC
Confidence 4567999999844333333334 78999999998521 11 2677998864
No 132
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=28.56 E-value=20 Score=33.87 Aligned_cols=36 Identities=19% Similarity=0.444 Sum_probs=24.9
Q ss_pred CCCCCCcccccccccCCCc-eEecCCCCcccHhhHHHHH
Q 001043 1114 GLETNCPICCDFLFTSSAT-VRALPCGHFMHSDCFQAYT 1151 (1177)
Q Consensus 1114 ~~~~~CpICle~lf~s~~~-v~~LpCGH~fH~~Ci~~wl 1151 (1177)
..+..|.||.+. ..... +.=-.|+..||..|+...+
T Consensus 5 ~~~~~C~~C~~~--g~~~~ll~C~~C~~~~H~~Cl~~~~ 41 (111)
T 2ysm_A 5 SSGANCAVCDSP--GDLLDQFFCTTCGQHYHGMCLDIAV 41 (111)
T ss_dssp CCCSCBTTTCCC--CCTTTSEECSSSCCEECTTTTTCCC
T ss_pred CCCCCCcCCCCC--CCCcCCeECCCCCCCcChHHhCCcc
Confidence 356789999875 11111 3335899999999998765
No 133
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=28.22 E-value=29 Score=29.59 Aligned_cols=47 Identities=19% Similarity=0.484 Sum_probs=32.0
Q ss_pred cCCCCCCcccccccccCCCceEecCCCCcccHhhHHHHHh----cCCCCCCCccc
Q 001043 1113 KGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTC----SHYICPICSKS 1163 (1177)
Q Consensus 1113 ~~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~----~~~~CPiCrk~ 1163 (1177)
...+..|.||.+. ++-+.--.|.-.||..|+..=+. ..-.||.|.+.
T Consensus 8 ~~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 8 TDHQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SCCCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 3446779999863 22222237888999999987542 35679999863
No 134
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.16 E-value=28 Score=30.62 Aligned_cols=40 Identities=23% Similarity=0.344 Sum_probs=28.8
Q ss_pred CCCCCcccccccccCCCceEecCCCCcccHhhHHHHHhcCCCCCCCcccccc
Q 001043 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1177)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~CPiCrk~v~d 1166 (1177)
....|+.|.+.|. +..+. .-|..||.+|+ +|-.|++.|..
T Consensus 14 ~~~~C~~C~~~I~--~~~v~--a~~~~~H~~CF--------~C~~C~~~L~~ 53 (79)
T 2cor_A 14 GKYICQKCHAIID--EQPLI--FKNDPYHPDHF--------NCANCGKELTA 53 (79)
T ss_dssp CCCBCTTTCCBCC--SCCCC--CSSSCCCTTTS--------BCSSSCCBCCT
T ss_pred CCCCCccCCCEec--ceEEE--ECcceeCCCCC--------EeCCCCCccCC
Confidence 3467999998876 23333 34888999885 68889988864
No 135
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=27.40 E-value=25 Score=29.78 Aligned_cols=14 Identities=43% Similarity=1.215 Sum_probs=10.7
Q ss_pred cceEecccccc-ccC
Q 001043 1055 MAKYYCGICKF-FDD 1068 (1177)
Q Consensus 1055 ~a~Y~C~~C~l-~dd 1068 (1177)
|.+|-|.+|.+ ||.
T Consensus 1 m~~y~C~vCGyvYd~ 15 (54)
T 4rxn_A 1 MKKYTCTVCGYIYDP 15 (54)
T ss_dssp CCCEEETTTCCEECT
T ss_pred CCceECCCCCeEECC
Confidence 57899999986 554
No 136
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=26.78 E-value=27 Score=33.48 Aligned_cols=26 Identities=23% Similarity=0.565 Sum_probs=13.7
Q ss_pred ceEecccccc-ccCCCCcc-cCCCCCcc
Q 001043 1056 AKYYCGICKF-FDDERVVY-HCPFCNLC 1081 (1177)
Q Consensus 1056 a~Y~C~~C~l-~dd~k~~y-HC~~CgiC 1081 (1177)
+.|.|..|.. |.-+...+ .||.||--
T Consensus 72 ~~~~C~~CG~~~e~~~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 72 VELECKDCSHVFKPNALDYGVCEKCHSK 99 (119)
T ss_dssp CEEECSSSSCEECSCCSTTCCCSSSSSC
T ss_pred ceEEcCCCCCEEeCCCCCCCcCccccCC
Confidence 3455555532 33334556 67777754
No 137
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=26.67 E-value=14 Score=34.87 Aligned_cols=24 Identities=25% Similarity=0.617 Sum_probs=17.1
Q ss_pred ccccCCcccccccccccccccccCCCCCCccccccc
Q 001043 1091 FFHCMTCNCCLAKKLVDHKCREKGLETNCPICCDFL 1126 (1177)
Q Consensus 1091 ~fhC~~C~~C~s~~l~~H~C~e~~~~~~CpICle~l 1126 (1177)
+|||..|+.-+.+ ...||-|.++|
T Consensus 48 ~~hC~~C~~~f~~------------~a~CPdC~q~L 71 (101)
T 2jne_A 48 HARCRSCGEFIEM------------KALCPDCHQPL 71 (101)
T ss_dssp EEEETTTCCEEEE------------EEECTTTCSBC
T ss_pred EEECccccchhhc------------cccCcchhhHH
Confidence 6777777775554 46799998774
No 138
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=26.61 E-value=43 Score=38.53 Aligned_cols=47 Identities=19% Similarity=0.569 Sum_probs=32.1
Q ss_pred CCCCcccccccccCCCceEecCCCCc--ccHhhHHHHHh--cCCCCCCCccccc
Q 001043 1116 ETNCPICCDFLFTSSATVRALPCGHF--MHSDCFQAYTC--SHYICPICSKSLG 1165 (1177)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~--fH~~Ci~~wl~--~~~~CPiCrk~v~ 1165 (1177)
.-.|||=...| ..+++...|.|. |-..=|-++.. ....||+|.+.+.
T Consensus 249 SL~CPlS~~ri---~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 249 SLQCPISYTRM---KYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp ESBCTTTSSBC---SSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred eecCCCccccc---cccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 45799887764 458899999986 44443433332 3577999999773
No 139
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=26.60 E-value=9.5 Score=36.21 Aligned_cols=49 Identities=16% Similarity=0.452 Sum_probs=32.3
Q ss_pred CCCCcccccccccCCCceEec-CCCCcccHhhHHHH------H----hcCCCCCCCcccc
Q 001043 1116 ETNCPICCDFLFTSSATVRAL-PCGHFMHSDCFQAY------T----CSHYICPICSKSL 1164 (1177)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~L-pCGH~fH~~Ci~~w------l----~~~~~CPiCrk~v 1164 (1177)
...|+||..+....+.-+.-= .|.--||..|+.-= + ...+.||.|++..
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 356999998843333322222 68889999998521 1 1568899998754
No 140
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=26.23 E-value=27 Score=31.30 Aligned_cols=24 Identities=25% Similarity=0.715 Sum_probs=0.0
Q ss_pred ceEeccccccccCC---CCcccCCCCC
Q 001043 1056 AKYYCGICKFFDDE---RVVYHCPFCN 1079 (1177)
Q Consensus 1056 a~Y~C~~C~l~dd~---k~~yHC~~Cg 1079 (1177)
++|.|+-|.--.=. -+|+||..||
T Consensus 25 ~ky~C~fCgk~~vkR~a~GIW~C~~C~ 51 (72)
T 3jyw_9 25 ARYDCSFCGKKTVKRGAAGIWTCSCCK 51 (72)
T ss_dssp SCBCCSSCCSSCBSBCSSSCBCCSSSC
T ss_pred cCccCCCCCCceeEecCCCeEECCCCC
No 141
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.19 E-value=36 Score=29.79 Aligned_cols=39 Identities=33% Similarity=0.762 Sum_probs=28.1
Q ss_pred CCCCcccccccccCCCceEecCCCCcccHhhHHHHHhcCCCCCCCcccccc
Q 001043 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1177)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~CPiCrk~v~d 1166 (1177)
...|+.|.+.+. .+.+.. -|..||.+|+ +|-.|++.+.+
T Consensus 15 ~~~C~~C~~~I~--~~~v~a--~~~~wH~~CF--------~C~~C~~~L~~ 53 (81)
T 1v6g_A 15 GTRCFSCDQFIE--GEVVSA--LGKTYHPDCF--------VCAVCRLPFPP 53 (81)
T ss_dssp CCBCTTTCCBCC--SCCEEE--TTEEECTTTS--------SCSSSCCCCCS
T ss_pred CCcCccccCEec--cceEEE--CCceeCccCC--------ccccCCCCCCC
Confidence 457999999876 233443 4788998886 58888888764
No 142
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.13 E-value=40 Score=29.18 Aligned_cols=39 Identities=15% Similarity=0.550 Sum_probs=27.2
Q ss_pred CCCCcccccccccCCCceEecCCCCcccHhhHHHHHhcCCCCCCCcccccc
Q 001043 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1177)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~CPiCrk~v~d 1166 (1177)
...|+-|...|.. ..+ ..-|..||.+|+ +|-.|++.+.+
T Consensus 5 ~~~C~~C~~~I~~--~~v--~a~~~~wH~~CF--------~C~~C~~~L~~ 43 (73)
T 1wig_A 5 SSGCDSCEKYITG--RVL--EAGEKHYHPSCA--------LCVRCGQMFAE 43 (73)
T ss_dssp CCSCSSSCCCCSS--CCB--CCSSCCBCTTTS--------CCSSSCCCCCS
T ss_pred cCCcccCCCEecC--eeE--EeCCCCCCCCcC--------EeCCCCCCCCC
Confidence 4568888888653 222 345788998885 68888888763
No 143
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.65 E-value=30 Score=31.02 Aligned_cols=41 Identities=17% Similarity=0.401 Sum_probs=29.8
Q ss_pred CCCCCCcccccccccCCCceEecCCCCcccHhhHHHHHhcCCCCCCCcccccc
Q 001043 1114 GLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1177)
Q Consensus 1114 ~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~CPiCrk~v~d 1166 (1177)
.....|+.|.+.|. .+.+. .-|..||.+|| +|-.|++.|.+
T Consensus 23 ~~~~~C~~C~~~I~--~~~v~--a~~~~~H~~CF--------~C~~C~~~L~~ 63 (90)
T 2dar_A 23 KRTPMCAHCNQVIR--GPFLV--ALGKSWHPEEF--------NCAHCKNTMAY 63 (90)
T ss_dssp TCCCBBSSSCCBCC--SCEEE--ETTEEECTTTC--------BCSSSCCBCSS
T ss_pred CCCCCCccCCCEec--ceEEE--ECCccccccCC--------ccCCCCCCCCC
Confidence 34567999998873 33333 34889999885 68899998875
No 144
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.31 E-value=30 Score=29.93 Aligned_cols=41 Identities=29% Similarity=0.661 Sum_probs=29.8
Q ss_pred CCCCCcccccccccCCCceEecCCCCcccHhhHHHHHhcCCCCCCCcccccc
Q 001043 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1177)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~CPiCrk~v~d 1166 (1177)
....|+.|.+.+.. .+.+.. -|..||.+|+ +|..|++.|.+
T Consensus 8 ~~~~C~~C~~~I~~-~~~v~a--~~~~~H~~CF--------~C~~C~~~L~~ 48 (76)
T 2cu8_A 8 MASKCPKCDKTVYF-AEKVSS--LGKDWHKFCL--------KCERCSKTLTP 48 (76)
T ss_dssp CCCBCTTTCCBCCT-TTEEEE--TTEEEETTTC--------BCSSSCCBCCT
T ss_pred CCCCCcCCCCEeEC-CeEEEE--CCeEeeCCCC--------CCCCCCCccCC
Confidence 34679999998753 333443 4888999885 68999998874
No 145
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=25.12 E-value=49 Score=37.97 Aligned_cols=47 Identities=26% Similarity=0.615 Sum_probs=32.1
Q ss_pred CCCCcccccccccCCCceEecCCCCc--ccHhhHHHHHh--cCCCCCCCccccc
Q 001043 1116 ETNCPICCDFLFTSSATVRALPCGHF--MHSDCFQAYTC--SHYICPICSKSLG 1165 (1177)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~--fH~~Ci~~wl~--~~~~CPiCrk~v~ 1165 (1177)
.-.|||=...| ..+++...|.|. |-..=+-++.. ....||+|.+.+.
T Consensus 215 SL~CPlS~~ri---~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 215 SLMCPLGKMRL---TIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp ESBCTTTCSBC---SSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeeCCCcccee---ccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 34699887664 458888999976 44444444332 3477999999774
No 146
>3oao_A Uncharacterized protein from DUF2059 family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.72A {Pseudomonas aeruginosa} PDB: 2x3o_A
Probab=25.10 E-value=1.4e+02 Score=30.01 Aligned_cols=73 Identities=14% Similarity=0.108 Sum_probs=53.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHhHHHH--HHHhhhHHHhhCCHHHHHHHH--------HHHhhcCCHH---HHHHHHhhhc
Q 001043 143 EESYRRELASCTGALQTSISQHMSKE--EEQVFPLLIEKFSFEEQASLV--------WQFLCSIPVN---MMAEFLPWLS 209 (1177)
Q Consensus 143 ~~~~~~eLa~~l~~l~~~l~qHm~~E--E~~v~PLl~~~fS~~E~a~L~--------~~~i~siP~~---~m~~~LpWm~ 209 (1177)
+++....+..+.+.+.+.+.+.+..+ +..+.++..+|||.+|+.+|. ..++...|.- .|...-.|+.
T Consensus 41 p~~~~~~~~~~~~k~~~~~~k~~s~~~l~~~~~~iY~~~fT~~El~~l~~FY~sp~Gkk~~~~~p~~~~~~~~~~q~~~~ 120 (147)
T 3oao_A 41 PESKKAVLERYQAKANAELDRAIGWDKIKPELIKLYTTNFTESELKDLNAFYQSPLGKKVLEKMPRLTAESAQLTQAKLQ 120 (147)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHSCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34556777778888888888888544 588999999999999999875 4577776653 3446667776
Q ss_pred CCCCHHH
Q 001043 210 SSISSDE 216 (1177)
Q Consensus 210 ~~lsp~E 216 (1177)
. +.|.-
T Consensus 121 ~-~~p~~ 126 (147)
T 3oao_A 121 G-AVEPV 126 (147)
T ss_dssp G-GHHHH
T ss_pred H-HHHHH
Confidence 6 33443
No 147
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=24.80 E-value=40 Score=28.23 Aligned_cols=12 Identities=33% Similarity=0.935 Sum_probs=9.0
Q ss_pred cceEeccccccc
Q 001043 1055 MAKYYCGICKFF 1066 (1177)
Q Consensus 1055 ~a~Y~C~~C~l~ 1066 (1177)
|.+|.|.+|.+.
T Consensus 1 m~~y~C~~CGyv 12 (52)
T 1e8j_A 1 MDIYVCTVCGYE 12 (52)
T ss_dssp CCCEECSSSCCC
T ss_pred CCcEEeCCCCeE
Confidence 567888888763
No 148
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=24.64 E-value=19 Score=34.96 Aligned_cols=30 Identities=17% Similarity=0.434 Sum_probs=16.8
Q ss_pred cceEecccccccc---CCCCcccCCCCCccccC
Q 001043 1055 MAKYYCGICKFFD---DERVVYHCPFCNLCRVG 1084 (1177)
Q Consensus 1055 ~a~Y~C~~C~l~d---d~k~~yHC~~CgiCrvg 1084 (1177)
-++|+|+-|.--+ ..-.|+||.+||.--.|
T Consensus 58 ~akytCPfCGk~~vKR~avGIW~C~~Cgk~fAG 90 (116)
T 3cc2_Z 58 NEDHACPNCGEDRVDRQGTGIWQCSYCDYKFTG 90 (116)
T ss_dssp HSCEECSSSCCEEEEEEETTEEEETTTCCEEEC
T ss_pred ccCCcCCCCCCceeEecCceeEECCCCCCEEEC
Confidence 3566666664311 11467777777765555
No 149
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=24.40 E-value=26 Score=32.84 Aligned_cols=14 Identities=14% Similarity=0.522 Sum_probs=6.6
Q ss_pred CCcccCCCCCcccc
Q 001043 1070 RVVYHCPFCNLCRV 1083 (1177)
Q Consensus 1070 k~~yHC~~CgiCrv 1083 (1177)
-+|+||..||.=-.
T Consensus 52 ~GIW~C~~C~~~~A 65 (92)
T 3izc_m 52 AGIWTCSCCKKTVA 65 (92)
T ss_dssp TTEEECTTTCCEEE
T ss_pred cceEEcCCCCCEEe
Confidence 34555555554333
No 150
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=24.33 E-value=13 Score=27.51 Aligned_cols=17 Identities=35% Similarity=0.806 Sum_probs=12.9
Q ss_pred CCCCCCCcccccccccc
Q 001043 1154 HYICPICSKSLGDMAVL 1170 (1177)
Q Consensus 1154 ~~~CPiCrk~v~dm~~~ 1170 (1177)
.++||+|+..+.|+..|
T Consensus 3 k~~CpvCk~q~Pd~kt~ 19 (28)
T 2jvx_A 3 DFCCPKCQYQAPDMDTL 19 (28)
T ss_dssp CEECTTSSCEESSHHHH
T ss_pred cccCccccccCcChHHH
Confidence 46799999988876543
No 151
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=24.26 E-value=22 Score=32.72 Aligned_cols=11 Identities=18% Similarity=0.531 Sum_probs=7.1
Q ss_pred CCCCCcccccc
Q 001043 1115 LETNCPICCDF 1125 (1177)
Q Consensus 1115 ~~~~CpICle~ 1125 (1177)
..-.|-||.+.
T Consensus 46 g~l~C~~Cg~~ 56 (85)
T 1wii_A 46 GVISCTVCLEE 56 (85)
T ss_dssp EEEEESSSCCE
T ss_pred EEEEcccCCCe
Confidence 34567777765
No 152
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=24.25 E-value=36 Score=34.31 Aligned_cols=59 Identities=19% Similarity=0.436 Sum_probs=33.5
Q ss_pred CCcccccccccCCccccccccccccccCCcccCcccccccCCCCCCccccceeeccccCccccCCCCCCCCCCC-Ccccc
Q 001043 978 PSFRDAEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCS-GLSMA 1056 (1177)
Q Consensus 978 ~~~~~~~~~~~gC~HY~r~c~l~~~cC~k~y~Cr~CHde~~~H~~~r~~~~~~~C~~C~~~q~~~~~C~~~~C~-~~~~a 1056 (1177)
.+|..|.+ =+|.++++++.. -+||.= |+ + ++++.....|.+++|+ |.-||
T Consensus 83 k~~t~Pkk----~~~~~~~~~~~~---~~~~~~----~~--~----------------~~~~~~~~~c~~~~cg~g~fma 133 (152)
T 3u5c_f 83 XXXXXXXX----XXXXXXXXXXXV---LSYYKV----DA--E----------------GKVTKLRRECSNPTCGAGVFLA 133 (152)
T ss_dssp CCCCCCSC----CCCCCCCCCCCC---CCCSEE----CS--S----------------SCEECCSCBCCSTTSCSSSBEE
T ss_pred cccccccc----ccccccccccce---eeEEEE----cc--C----------------CeEEECcCcCCCccCCCceEec
Confidence 46766644 368888887743 355532 00 1 2344445567666674 33455
Q ss_pred ----eEecccccc
Q 001043 1057 ----KYYCGICKF 1065 (1177)
Q Consensus 1057 ----~Y~C~~C~l 1065 (1177)
+|||.+|.+
T Consensus 134 ~h~~r~~cgkc~~ 146 (152)
T 3u5c_f 134 NHKDRLYCGKCHS 146 (152)
T ss_dssp ECSSCEEESSSSS
T ss_pred ccCCCcccCCCce
Confidence 778888865
No 153
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=24.14 E-value=34 Score=34.97 Aligned_cols=85 Identities=21% Similarity=0.439 Sum_probs=54.7
Q ss_pred cccCCCCCccccCCCCCccccccCCccccccccc-ccccccccCCCCCCcccccccccCCCceEe-c--CCCCcccHhhH
Q 001043 1072 VYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKL-VDHKCREKGLETNCPICCDFLFTSSATVRA-L--PCGHFMHSDCF 1147 (1177)
Q Consensus 1072 ~yHC~~CgiCrvg~gl~~~~fhC~~C~~C~s~~l-~~H~C~e~~~~~~CpICle~lf~s~~~v~~-L--pCGH~fH~~Ci 1147 (1177)
.++|-.||--.+- .-...|....|..|...-+ ......+.+.+.-|.||.+. + .+.. - .|-..|...||
T Consensus 36 e~~Ct~CG~~~~~--~~HPlf~v~lC~~Ck~~y~e~~f~~DeDG~~~yC~wC~~G----g-~l~~Cdn~~C~r~FC~~CI 108 (159)
T 3a1b_A 36 EDICISCGSLNVT--LEHPLFVGGMCQNCKNCFLECAYQYDDDGYQSYCTICCGG----R-EVLMCGNNNCCRCFCVECV 108 (159)
T ss_dssp GGSBTTTCCSCCC--EECSSBSSEECHHHHHHHHHHTTCBCTTSSBSSCTTTSCC----S-EEEECSSTTTCCEEEHHHH
T ss_pred cCcccCCCCcCcc--ccCCCccchhhHHHHHHHhhcccccCCCCCcceeeEecCC----C-eEEeeCCCCCCCchhHHHH
Confidence 4566666653322 1124555666666665544 56667888899999999864 2 2322 2 58899999999
Q ss_pred HHHHhc----------CCCCCCCccc
Q 001043 1148 QAYTCS----------HYICPICSKS 1163 (1177)
Q Consensus 1148 ~~wl~~----------~~~CPiCrk~ 1163 (1177)
+..+.. .-.|=+|.-.
T Consensus 109 ~~nvG~~~~~~i~~~d~W~Cy~C~P~ 134 (159)
T 3a1b_A 109 DLLVGPGAAQAAIKEDPWNCYMCGHK 134 (159)
T ss_dssp HHHTCTTHHHHHHTSSSCCCTTTCSS
T ss_pred HHhcCHhHHHHHhccCCCEEEecCCc
Confidence 998743 2447777654
No 154
>2ajj_A NS5A, nonstructural protein 5A; IN-plane membrane anchor domain, amphipathic alpha-helix, membrane protein; NMR {Synthetic} PDB: 2ajm_A 2ajn_A 2ajo_A
Probab=23.90 E-value=64 Score=23.91 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=18.8
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q 001043 645 PIDNIFKFHKAIRKDLEYLDG 665 (1177)
Q Consensus 645 PId~i~~~HkAIRkdL~~l~~ 665 (1177)
-+|.|+.+|+-|++-++.++-
T Consensus 5 iLdLl~~lh~~~~~~ikk~~l 25 (28)
T 2ajj_A 5 VLDLIYSLHKQINRGLKKIVL 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 589999999999999998863
No 155
>1tac_A TAT protein; transcription regulation, HIV-1, transactivation, RNA binding, structure; NMR {Human immunodeficiency virus 1} SCOP: j.40.1.1
Probab=23.80 E-value=50 Score=30.40 Aligned_cols=23 Identities=22% Similarity=0.492 Sum_probs=16.1
Q ss_pred eccccccccCCCCcccCCCCCccccCCCCCcccc
Q 001043 1059 YCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFF 1092 (1177)
Q Consensus 1059 ~C~~C~l~dd~k~~yHC~~CgiCrvg~gl~~~~f 1092 (1177)
||-+|- ||| -+|-+.+|||+.|.
T Consensus 26 yCKkCc--------~HC---q~CF~~KGLGIsYg 48 (86)
T 1tac_A 26 HAKKSA--------YHS---QVAFITKGLGISYG 48 (86)
T ss_dssp STTTTT--------TTC---CCSCSSTTSSSSSC
T ss_pred eecchh--------hhh---hHHHccCCCceEec
Confidence 666663 564 56788999998764
No 156
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=23.80 E-value=19 Score=37.77 Aligned_cols=47 Identities=19% Similarity=0.431 Sum_probs=31.3
Q ss_pred CCCCCCcccccccccCCCceEecCCCCcccHhhHHHHHh----cCCCCCCCcccc
Q 001043 1114 GLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTC----SHYICPICSKSL 1164 (1177)
Q Consensus 1114 ~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~----~~~~CPiCrk~v 1164 (1177)
..+..|.||... ++-+.-=.|.-.||..|+.+-+. ..-.||.|+..-
T Consensus 5 ~~~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNG----GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCC----EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCC----CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 345679999754 22111226789999999987654 346799998743
No 157
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=23.65 E-value=26 Score=28.91 Aligned_cols=44 Identities=18% Similarity=0.379 Sum_probs=28.8
Q ss_pred CCCcccccccccCCCceEe-c-CCCCcccHhhHHHH----HhcCCCCCCCc
Q 001043 1117 TNCPICCDFLFTSSATVRA-L-PCGHFMHSDCFQAY----TCSHYICPICS 1161 (1177)
Q Consensus 1117 ~~CpICle~lf~s~~~v~~-L-pCGH~fH~~Ci~~w----l~~~~~CPiCr 1161 (1177)
-.|.||..+ +..+...+. - .|.--||..|+.-- ....+.||.|+
T Consensus 3 c~cc~C~~p-~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 3 CAAQNCQRP-CKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp CSCTTCCCC-CCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred ccCCCCcCc-cCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 358899887 333332322 3 58889999997632 23679999996
No 158
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.61 E-value=37 Score=28.67 Aligned_cols=39 Identities=28% Similarity=0.674 Sum_probs=28.0
Q ss_pred CCCCcccccccccCCCceEecCCCCcccHhhHHHHHhcCCCCCCCcccccc
Q 001043 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1177)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~CPiCrk~v~d 1166 (1177)
...|+.|.+.+.. +.+..+ |..||.+|+ +|-.|++.+..
T Consensus 5 ~~~C~~C~~~I~~--~~~~a~--~~~~H~~CF--------~C~~C~~~L~~ 43 (69)
T 2cur_A 5 SSGCVKCNKAITS--GGITYQ--DQPWHADCF--------VCVTCSKKLAG 43 (69)
T ss_dssp CCCCSSSCCCCCT--TCEEET--TEEECTTTT--------BCTTTCCBCTT
T ss_pred cCCCcccCCEeCc--ceEEEC--ccccccCcC--------EECCCCCCCCC
Confidence 4578999988753 334443 788998886 68889988863
No 159
>3agt_A Hemerythrin-like domain protein DCRH; metal binding protein, oxygen binding, DIIRON, four-helix BU; 1.40A {Desulfovibrio vulgaris} PDB: 2awy_A 2avk_A 3agu_A 2awc_A
Probab=23.54 E-value=4.9e+02 Score=24.86 Aligned_cols=112 Identities=14% Similarity=0.182 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCcccHHHHHHHHHHHHHHHHhhhhccccch----hhhhhhhhhhHHhHHHHH
Q 001043 295 DEIMLWHNAIKRELNDIAEAARKIQLSGDFSDLSAFNKRLQFIAEVCIFHSIAEDKVI----FPAVDVELSFAQEHAEEE 370 (1177)
Q Consensus 295 d~l~~~HkALRrEL~~L~~~a~~i~~~gd~~~L~~L~~r~~fl~~vl~~Hs~aEDevl----FPaL~~r~~me~EH~~ie 370 (1177)
..+=.-|+.|=.-+++|...+.. ++ ...+..-+.+|.+-...|=..|+.++ ||.++.+. ++++
T Consensus 17 ~~ID~qHk~L~~lin~l~~a~~~----~~---~~~i~~~l~~L~~y~~~HF~~EE~lM~~~~yp~~~~H~------~~H~ 83 (136)
T 3agt_A 17 PSIDTQHKRLVDYINDLYRAARR----RD---MDKAREVFDALKNYAVEHFGYEERLFADYAYPEATRHK------EIHR 83 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT----TC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHH------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc----Cc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHH------HHHH
Confidence 34445788777777777766543 22 45666677888999999999998754 67665443 3344
Q ss_pred HHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 001043 371 IQFDKLRCLIESIQSAGANSSTAEFYTKLCSQADLIMASIQKHFRNEEVQVLPLARR 427 (1177)
Q Consensus 371 ~l~e~l~~ll~~~~~~~~~~~~~~~~~eLa~~le~L~~~L~~Hf~~EE~qvfPLl~~ 427 (1177)
..++.+..+...+.. +. ..+..+| +.-|..-|..|...+-...-+.+.+
T Consensus 84 ~f~~~v~~l~~~~~~-g~----~~~~~~l---~~~L~~Wl~~HI~~~D~~~~~~l~~ 132 (136)
T 3agt_A 84 RFVETVLKWEKQLAA-GD----PEVVMTT---LRGLVDWLVNHIMKEDKKYEAYLRE 132 (136)
T ss_dssp HHHHHHHHHHHHHTT-CC----HHHHHHH---HHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc-CC----hHHHHHH---HHHHHHHHHHHhHHHhHHHHHHHHH
Confidence 455555555554432 21 1233333 4446778999999998888776644
No 160
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=23.48 E-value=22 Score=30.83 Aligned_cols=19 Identities=37% Similarity=0.817 Sum_probs=9.7
Q ss_pred CCcccHhhHHHHHhcCCCCCCCccccc
Q 001043 1139 GHFMHSDCFQAYTCSHYICPICSKSLG 1165 (1177)
Q Consensus 1139 GH~fH~~Ci~~wl~~~~~CPiCrk~v~ 1165 (1177)
|..||.+|+ +|..|++.+.
T Consensus 20 ~~~~H~~CF--------~C~~C~~~L~ 38 (76)
T 1iml_A 20 GKDWHRPCL--------KCEKCGKTLT 38 (76)
T ss_dssp TEEEETTTC--------BCTTTCCBCC
T ss_pred CccccCCCC--------CccccCccCC
Confidence 555555543 3555555544
No 161
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.44 E-value=41 Score=29.74 Aligned_cols=41 Identities=27% Similarity=0.508 Sum_probs=29.9
Q ss_pred CCCCCcccccccccCCCceEecCCCCcccHhhHHHHHhcCCCCCCCcccccc
Q 001043 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1177)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~CPiCrk~v~d 1166 (1177)
....|+.|.+.|+. .+.+..+ |..||.+|+ +|-.|++.|.+
T Consensus 14 ~~~~C~~C~~~I~~-~~~v~a~--~~~wH~~CF--------~C~~C~~~L~~ 54 (80)
T 2dj7_A 14 GPSHCAGCKEEIKH-GQSLLAL--DKQWHVSCF--------KCQTCSVILTG 54 (80)
T ss_dssp SCSCCTTTCCCCSS-SCCEEET--TEEECTTTC--------BCSSSCCBCSS
T ss_pred CCCCCcCcCCeeCC-CeEEEEC--CcccccccC--------CcCcCCCCcCC
Confidence 35679999998753 3344444 788999885 68899998864
No 162
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=23.15 E-value=17 Score=31.84 Aligned_cols=48 Identities=19% Similarity=0.522 Sum_probs=31.5
Q ss_pred CCCCCCcccccccccCCCceEecCCCCcccHhhHHHHH---hcCCCCCCCccc
Q 001043 1114 GLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYT---CSHYICPICSKS 1163 (1177)
Q Consensus 1114 ~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl---~~~~~CPiCrk~ 1163 (1177)
.....| ||... +..+.-+.--.|.--||..|+.--. ...+.||.|+++
T Consensus 17 ~~~~~C-iC~~~-~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~s 67 (68)
T 3o70_A 17 QGLVTC-FCMKP-FAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRDS 67 (68)
T ss_dssp TTCCCS-TTCCC-CTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHTC
T ss_pred CCceEe-ECCCc-CCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCCC
Confidence 345668 99876 3322223334789999999986432 246889999864
No 163
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=22.85 E-value=21 Score=32.67 Aligned_cols=30 Identities=17% Similarity=0.492 Sum_probs=20.6
Q ss_pred ceEeccccc---cccCCCCcccCCCCCccccCC
Q 001043 1056 AKYYCGICK---FFDDERVVYHCPFCNLCRVGR 1085 (1177)
Q Consensus 1056 a~Y~C~~C~---l~dd~k~~yHC~~CgiCrvg~ 1085 (1177)
++|.|+-|. +|+..-++.+|++||---.|+
T Consensus 26 ~~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~agg 58 (83)
T 1vq8_Z 26 EDHACPNCGEDRVDRQGTGIWQCSYCDYKFTGG 58 (83)
T ss_dssp SCEECSSSCCEEEEEEETTEEEETTTCCEEECC
T ss_pred ccCcCCCCCCcceeccCCCeEECCCCCCEecCC
Confidence 467777774 344447888888888776663
No 164
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=22.78 E-value=27 Score=29.80 Aligned_cols=47 Identities=19% Similarity=0.432 Sum_probs=30.8
Q ss_pred CCCCCCcccccccccCCCceEecCCCCcccHhhHHHHHh----cCCCCCCCcccc
Q 001043 1114 GLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTC----SHYICPICSKSL 1164 (1177)
Q Consensus 1114 ~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~----~~~~CPiCrk~v 1164 (1177)
..+..|.||.+. ++-+.--.|.-.||..|+..=+. ..-.||.|....
T Consensus 7 ~~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG----GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC----SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC----CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 345678999753 22222236888999999986443 345699998654
No 165
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.74 E-value=40 Score=29.26 Aligned_cols=40 Identities=23% Similarity=0.551 Sum_probs=27.8
Q ss_pred CCCCcccccccccCCCceEecCCCCcccHhhHHHHHhcCCCCCCCccccccc
Q 001043 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDM 1167 (1177)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~CPiCrk~v~dm 1167 (1177)
...|+.|.+.|.. +.+..+ |..||.+|+ +|-.|++.+.+-
T Consensus 15 ~~~C~~C~~~I~~--~~v~a~--~~~~H~~CF--------~C~~C~~~L~~~ 54 (80)
T 1x3h_A 15 SPKCGGCNRPVLE--NYLSAM--DTVWHPECF--------VCGDCFTSFSTG 54 (80)
T ss_dssp SCBCTTTCCBCCS--SCEEET--TEEECTTTC--------BCSSSCCBSCSS
T ss_pred CCccccCCCeecc--eeEEEC--CCeEecCcC--------ChhhCCCCCCCC
Confidence 3568888888753 334433 778888875 588888888653
No 166
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.57 E-value=43 Score=29.63 Aligned_cols=43 Identities=30% Similarity=0.722 Sum_probs=30.6
Q ss_pred CCCCCCcccccccccCCCceEecCCCCcccHhhHHHHHhcCCCCCCCccccccc
Q 001043 1114 GLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDM 1167 (1177)
Q Consensus 1114 ~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~CPiCrk~v~dm 1167 (1177)
.....|+.|.+.++. .+.+. .-|..||..|+ +|-.|++.+...
T Consensus 13 ~~~~~C~~C~~~I~~-~e~v~--a~~~~wH~~CF--------~C~~C~~~L~~~ 55 (82)
T 2co8_A 13 GAGDLCALCGEHLYV-LERLC--VNGHFFHRSCF--------RCHTCEATLWPG 55 (82)
T ss_dssp CSSCBCSSSCCBCCT-TTBCC--BTTBCCBTTTC--------BCSSSCCBCCTT
T ss_pred CCCCCCcccCCCccc-ceEEE--ECCCeeCCCcC--------EEcCCCCCcCCC
Confidence 345679999998753 23333 34889999985 688899887653
No 167
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=22.34 E-value=27 Score=32.69 Aligned_cols=10 Identities=20% Similarity=0.624 Sum_probs=4.7
Q ss_pred CcccCCCCCc
Q 001043 1071 VVYHCPFCNL 1080 (1177)
Q Consensus 1071 ~~yHC~~Cgi 1080 (1177)
+|+||..||.
T Consensus 53 GIW~C~~Cg~ 62 (92)
T 3iz5_m 53 GIWGCKDCGK 62 (92)
T ss_dssp TEEECSSSCC
T ss_pred ceEEcCCCCC
Confidence 4444444443
No 168
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=22.30 E-value=51 Score=29.34 Aligned_cols=47 Identities=21% Similarity=0.617 Sum_probs=30.9
Q ss_pred CCCccccccccc-CCCceEecCCCCcccHhhHHHHH-----hcCCCCCCCccccc
Q 001043 1117 TNCPICCDFLFT-SSATVRALPCGHFMHSDCFQAYT-----CSHYICPICSKSLG 1165 (1177)
Q Consensus 1117 ~~CpICle~lf~-s~~~v~~LpCGH~fH~~Ci~~wl-----~~~~~CPiCrk~v~ 1165 (1177)
.-| ||... ++ ...-+.--.|.--||..|+.--. ...+.||.|+..-.
T Consensus 13 ~~C-~C~~~-~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 13 VYC-LCRQP-YNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCS-TTSCS-CCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred cEE-EcCCc-cCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccC
Confidence 445 88876 32 23333334789999999996321 24689999998654
No 169
>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A
Probab=21.94 E-value=23 Score=32.10 Aligned_cols=13 Identities=38% Similarity=1.088 Sum_probs=10.8
Q ss_pred cceEecccccccc
Q 001043 1055 MAKYYCGICKFFD 1067 (1177)
Q Consensus 1055 ~a~Y~C~~C~l~d 1067 (1177)
|.+|||+.|+.|=
T Consensus 1 mPkYyCdYCd~~l 13 (77)
T 3cw1_L 1 MPKFYCDYCDTYL 13 (77)
T ss_pred CCCcccccCCcee
Confidence 5789999998763
No 170
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=21.66 E-value=27 Score=33.67 Aligned_cols=45 Identities=22% Similarity=0.473 Sum_probs=31.5
Q ss_pred CCCCcccccccccCCCceEecCCCCcccHhhHHHHHhcCCCCCCCccccccc-cccc
Q 001043 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDM-AVLH 1171 (1177)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~CPiCrk~v~dm-~~~~ 1171 (1177)
...|+.|.+.|+. ...+. .-|..||..|| +|-.|++.+.+. ..||
T Consensus 61 ~~~C~~C~~~I~~-~~~v~--a~~~~wH~~CF--------~C~~C~~~L~~~g~~f~ 106 (123)
T 2l4z_A 61 WKRCAGCGGKIAD-RFLLY--AMDSYWHSRCL--------KCSSCQAQLGDIGTSSY 106 (123)
T ss_dssp CSBBSSSSSBCCS-SSEEE--ETTEEEETTTS--------BCTTTCCBGGGTTCCCB
T ss_pred CCcCcCCCCCcCC-cEEEE--eCCcEEccccc--------CcCcCCCcccccCCceE
Confidence 4679999998763 22233 34889999885 699999998743 3444
No 171
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=21.59 E-value=44 Score=31.41 Aligned_cols=10 Identities=40% Similarity=1.042 Sum_probs=4.9
Q ss_pred CCCCCccccc
Q 001043 1156 ICPICSKSLG 1165 (1177)
Q Consensus 1156 ~CPiCrk~v~ 1165 (1177)
+|-.|++.+.
T Consensus 32 ~C~~C~~~L~ 41 (114)
T 1j2o_A 32 SCDLCGCRLG 41 (114)
T ss_dssp CCSSSCSCCC
T ss_pred cccccCCchh
Confidence 3455555444
No 172
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.22 E-value=44 Score=29.03 Aligned_cols=38 Identities=24% Similarity=0.564 Sum_probs=27.1
Q ss_pred CCCCcccccccccCCCceEecCCCCcccHhhHHHHHhcCCCCCCCccccc
Q 001043 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLG 1165 (1177)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~CPiCrk~v~ 1165 (1177)
...|+.|.+.|.. +.+. .=|..||.+|+ +|-.|++.+.
T Consensus 15 ~~~C~~C~~~I~~--~~v~--a~~~~~H~~CF--------~C~~C~~~L~ 52 (80)
T 2cuq_A 15 APRCARCSKTLTQ--GGVT--YRDQPWHRECL--------VCTGCQTPLA 52 (80)
T ss_dssp SCCCTTTCCCCCS--CCEE--SSSSEECTTTC--------BCSSSCCBCT
T ss_pred CCcCCCCCCEecC--cEEE--ECCchhhhhhC--------CcccCCCcCC
Confidence 4578888888653 2233 34788998885 6888988885
No 173
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.85 E-value=53 Score=28.70 Aligned_cols=17 Identities=24% Similarity=0.468 Sum_probs=11.8
Q ss_pred ccccccccccccccCCc
Q 001043 991 EHYKRNCKLRAACCGKL 1007 (1177)
Q Consensus 991 ~HY~r~c~l~~~cC~k~ 1007 (1177)
.||.+.-..+|+.|++.
T Consensus 8 ~dy~~~~~~~C~~C~~~ 24 (81)
T 1v6g_A 8 LDYQRLYGTRCFSCDQF 24 (81)
T ss_dssp SCGGGSCCCBCTTTCCB
T ss_pred HHHHhHhCCcCccccCE
Confidence 46777766677777774
No 174
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=20.68 E-value=27 Score=35.81 Aligned_cols=45 Identities=20% Similarity=0.516 Sum_probs=31.1
Q ss_pred CCCCcccccccccCCCceEecCCCCcccHhhHHHHHhc----CCCCCCCcccc
Q 001043 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCS----HYICPICSKSL 1164 (1177)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~----~~~CPiCrk~v 1164 (1177)
+..|.||.+. ++-+.-=.|.-.||..|+.+-+.. ...||.|+..-
T Consensus 4 ~~~C~~C~~~----g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 4 EDWCAVCQNG----GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSSCTTTCCC----SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCccccCCCC----CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 5679999754 332222367889999998776543 46799999754
No 175
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=20.22 E-value=26 Score=33.34 Aligned_cols=14 Identities=14% Similarity=0.392 Sum_probs=6.3
Q ss_pred CCcccCCCCCcccc
Q 001043 1070 RVVYHCPFCNLCRV 1083 (1177)
Q Consensus 1070 k~~yHC~~CgiCrv 1083 (1177)
-+|+||..||.=-.
T Consensus 52 ~GIW~C~kCg~~~A 65 (103)
T 4a17_Y 52 VGIWKCKPCKKIIA 65 (103)
T ss_dssp TTEEEETTTTEEEE
T ss_pred cceEEcCCCCCEEe
Confidence 34455555544333
No 176
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=20.13 E-value=44 Score=27.99 Aligned_cols=11 Identities=45% Similarity=1.241 Sum_probs=7.2
Q ss_pred eEecccccc-cc
Q 001043 1057 KYYCGICKF-FD 1067 (1177)
Q Consensus 1057 ~Y~C~~C~l-~d 1067 (1177)
+|.|.+|.+ ||
T Consensus 2 ~~~C~~CGyvYd 13 (52)
T 1yk4_A 2 KLSCKICGYIYD 13 (52)
T ss_dssp EEEESSSSCEEE
T ss_pred cEEeCCCCeEEC
Confidence 577777765 44
No 177
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.12 E-value=46 Score=29.04 Aligned_cols=40 Identities=20% Similarity=0.497 Sum_probs=29.8
Q ss_pred CCCCCcccccccccCCCceEecCCCCcccHhhHHHHHhcCCCCCCCcccccc
Q 001043 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1177)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~CPiCrk~v~d 1166 (1177)
....|+.|.+.|.. +.+. .-|..||.+|| +|-.|++.|.+
T Consensus 14 ~~~~C~~C~~~I~~--~~~~--a~~~~~H~~CF--------~C~~C~~~L~~ 53 (79)
T 1x62_A 14 KLPMCDKCGTGIVG--VFVK--LRDRHRHPECY--------VCTDCGTNLKQ 53 (79)
T ss_dssp CCCCCSSSCCCCCS--SCEE--CSSCEECTTTT--------SCSSSCCCHHH
T ss_pred CCCccccCCCCccC--cEEE--ECcceeCcCcC--------eeCCCCCCCCC
Confidence 35679999998764 3333 34899999986 68999998854
No 178
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=20.12 E-value=22 Score=31.48 Aligned_cols=48 Identities=27% Similarity=0.623 Sum_probs=31.1
Q ss_pred CCCCcccccccccCCCceEecCCCCcccHhhHHHH---------HhcCCCCCCCccccc
Q 001043 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAY---------TCSHYICPICSKSLG 1165 (1177)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~w---------l~~~~~CPiCrk~v~ 1165 (1177)
..-| ||... +....-+.--.|.--||..|+.-- ....+.||.|+..-+
T Consensus 16 ~~~C-~C~~~-~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~ 72 (76)
T 1wem_A 16 ALYC-ICRQP-HNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSG 72 (76)
T ss_dssp CCCS-TTCCC-CCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSC
T ss_pred CCEE-ECCCc-cCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccC
Confidence 3456 88876 332232333478999999998521 135799999987543
No 179
>3kdw_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Bacteroides vulgatus atcc 8482} PDB: 3g6i_A*
Probab=20.06 E-value=4.4e+02 Score=27.99 Aligned_cols=144 Identities=13% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHhhccccccchhhHHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHHHHH-
Q 001043 93 KHHCNAEDEVIFPALDIRVKNIARTYSLEHEGESVLFDQLFELLNSSMRNEESYRRELASCTGALQTSISQHMSKEEEQ- 171 (1177)
Q Consensus 93 ~~H~~aEDevI~PaL~~Rv~~v~~~~~~EH~~~~~lf~~l~~~l~~~~~~~~~~~~eLa~~l~~l~~~l~qHm~~EE~~- 171 (1177)
||||.||+...-++.+.--.+-...|- ..+..+-...++.|--.++..+..+...|..--..|...=..-...
T Consensus 7 ~~~~~~~~~~~~~~~~l~~~~~~~~Y~------~si~kRA~kIVa~L~LtD~~k~~~V~~vIan~y~~L~Dih~~~~akv 80 (221)
T 3kdw_A 7 HHHHHHENLYFQGAVDLDREGRDPAYV------ESIVKRSQKIVDKLELTDTVAAREVTTIIANRYFKLNDIYETRDAKV 80 (221)
T ss_dssp -------CCCCCCSSCCCCTTSCHHHH------HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhHHHHHHHhcCccccchHHH------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhchhhh
Q ss_pred -hhhH-HHhhCCHHHHHHHHHHHhhcCCHHHHHHHHhhhcCCCCHHHHHHHHHHHh------------hcCCchhhHHHH
Q 001043 172 -VFPL-LIEKFSFEEQASLVWQFLCSIPVNMMAEFLPWLSSSISSDEHQDMRKCLC------------KIIPKEKLLRQV 237 (1177)
Q Consensus 172 -v~PL-l~~~fS~~E~a~L~~~~i~siP~~~m~~~LpWm~~~lsp~Er~~~l~~l~------------~~~P~e~~l~~~ 237 (1177)
-.|- +..--+.+....+.+. ....|-..=..++-||...||++.-..++..|- +++|.=+-=++.
T Consensus 81 k~ika~~~~~~~~~al~~l~~~-~da~l~~~H~~~~a~L~~~Lt~eQie~Vkd~mTyg~v~~T~k~y~~mvP~Lteeek~ 159 (221)
T 3kdw_A 81 KLAKETLTGDAKQEAVKAAEAE-KDAALYRTHFAFPADLSLYLDAKQIDAVKDGMTYGVVMVTYKATVDMIPTLKEEEKA 159 (221)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHH-HHHHHHHHHTHHHHHHTTTCCHHHHHHHHHHTTTTHHHHHHHHHHHHCTTCCHHHHH
T ss_pred hhhhhccCChhhhhHHHHHHHH-HHhhHHHHHHHHHHHHHhhcCHHHHHHHHcccceeeehhhHHHHHHHcCcccHHHHH
Q ss_pred -HHHHhc
Q 001043 238 -IFAWME 243 (1177)
Q Consensus 238 -~~~w~~ 243 (1177)
|..||.
T Consensus 160 ~I~~~L~ 166 (221)
T 3kdw_A 160 QIMAWLV 166 (221)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Done!