BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001044
(1177 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MM4|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana
pdb|3MMN|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana Complexed With Mg2+
Length = 206
Score = 84.0 bits (206), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 81/137 (59%), Gaps = 11/137 (8%)
Query: 1018 ILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQ 1077
L G R+L+ +D + + VA L+K+G VS V EAL R++ ++R Q
Sbjct: 58 FLRGKRVLVVDDNFISRKVATGKLKKMG--VSEVEQCDSGKEAL-RLVTEGLTQREE--Q 112
Query: 1078 GSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADE- 1136
GS + P FD I MDCQMP+MDGYEAT EIRK E +G R PI+A++ H ++E
Sbjct: 113 GSVDKLP----FDYIFMDCQMPEMDGYEATREIRKVEKSYGVRT-PIIAVSGHDPGSEEA 167
Query: 1137 KKCLGVGMNAYLTKPID 1153
++ + GM+A+L K ++
Sbjct: 168 RETIQAGMDAFLDKSLN 184
>pdb|3C97|A Chain A, Crystal Structure Of The Response Regulator Receiver Domain
Of A Signal Transduction Histidine Kinase From
Aspergillus Oryzae
Length = 140
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 75/142 (52%), Gaps = 28/142 (19%)
Query: 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEAL-NRMLAAESSRRRSLLQGSP 1080
L +L+AED + ++VA K LEK ++VV +GLQA++A NR
Sbjct: 11 LSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQNR----------------- 53
Query: 1081 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL 1140
+FD+I+MD QMP MDG EA EIR E H + I+A+TA ++ D
Sbjct: 54 -------QFDVIIMDIQMPVMDGLEAVSEIRNYERTHNTKRASIIAITADTIDDDRP--- 103
Query: 1141 GVGMNAYLTKPIDSERMVSTIL 1162
G ++ Y++KP++ ++ +L
Sbjct: 104 GAELDEYVSKPLNPNQLRDVVL 125
>pdb|3DGE|A Chain A, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGE|B Chain B, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
Length = 258
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 113/264 (42%), Gaps = 42/264 (15%)
Query: 495 KSQFLANMSHELRTPMAAIIGLLEILKSD----DQLTNEQYSTVCQIKKSSYAXXXXXXX 550
K++F+AN+SHELRTP+ AI E + + D T +++ V I +S++
Sbjct: 20 KTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVI-IDQSNHLENLLNEL 78
Query: 551 XXXXSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPG 610
S++E +++ + DL +E V+ S+HNV + + + P DP
Sbjct: 79 LDF-SRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPT 137
Query: 611 RVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQAN 670
R+ Q+ NL+NN +K++ D + D K G
Sbjct: 138 RIRQVLLNLLNNGVKYSKK------------DAPDKYVKVILDEKDGG------------ 173
Query: 671 NAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTL 730
+ V+D G GI + +FE F + D S T + GTGLGL+I + +
Sbjct: 174 ------------VLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEI 221
Query: 731 VNKMGGEIKVVKKNSPGTLMQLYL 754
V GG I V + G+ +++
Sbjct: 222 VELHGGRIWVESEVGKGSRFFVWI 245
>pdb|2C2A|A Chain A, Structure Of The Entire Cytoplasmic Portion Of A Sensor
Histidine Kinase Protein
Length = 258
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 113/264 (42%), Gaps = 42/264 (15%)
Query: 495 KSQFLANMSHELRTPMAAIIGLLEILKSD----DQLTNEQYSTVCQIKKSSYAXXXXXXX 550
K++F+AN+SHELRTP+ AI E + + D T +++ V I +S++
Sbjct: 20 KTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVI-IDQSNHLENLLNEL 78
Query: 551 XXXXSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPG 610
S++E +++ + DL +E V+ S+HNV + + + P DP
Sbjct: 79 LDF-SRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPT 137
Query: 611 RVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQAN 670
R+ Q+ NL+NN +K++ D + D K G
Sbjct: 138 RIRQVLLNLLNNGVKYSKK------------DAPDKYVKVILDEKDGG------------ 173
Query: 671 NAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTL 730
+ V+D G GI + +FE F + D S T + GTGLGL+I + +
Sbjct: 174 ------------VLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEI 221
Query: 731 VNKMGGEIKVVKKNSPGTLMQLYL 754
V GG I V + G+ +++
Sbjct: 222 VELHGGRIWVESEVGKGSRFFVWI 245
>pdb|1M5T|A Chain A, Crystal Structure Of The Response Regulator Divk
pdb|1M5U|A Chain A, Crystal Structure Of The Response Regulator Divk. Structure
At Ph 8.0 In The Apo-Form
pdb|1MAV|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 6.0
In Complex With Mn2+
pdb|1MB0|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.0
In Complex With Mn2+
pdb|1MB3|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.5
In Complex With Mg2+
Length = 124
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 1090 DLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149
DLILMD Q+P++ G E T +++ + +IP+VA+TA AM DE++ G AY++
Sbjct: 47 DLILMDIQLPEISGLEVTKWLKEDDD---LAHIPVVAVTAFAMKGDEERIREGGCEAYIS 103
Query: 1150 KPIDSERMVSTILRLTKNMPS 1170
KPI + TI RL + P+
Sbjct: 104 KPISVVHFLETIKRLLERQPA 124
>pdb|4EUK|A Chain A, Crystal Structure
Length = 153
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 77/158 (48%), Gaps = 46/158 (29%)
Query: 1023 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1082
+ILL ED + +VA +++++G T+ + +G++A+ A+N
Sbjct: 10 KILLVEDNKINIMVAKSMMKQLGHTMDIANNGVEAITAIN-------------------- 49
Query: 1083 TPDTPRFDLILMDCQMPKMDGYEAT-------------------IEIRKSESEHGA---- 1119
+ +DL+LMD MP +DG +AT ++I SE+E
Sbjct: 50 ---SSSYDLVLMDVCMPVLDGLKATRLIRSYEETGNWNAAIEAGVDISTSENEQVCMRPT 106
Query: 1120 RNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERM 1157
+PI+A+TA+ + ++C GM+++++KP+ +++
Sbjct: 107 NRLPIIAMTANTLAESSEECYANGMDSFISKPVTLQKL 144
>pdb|1OXB|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P2(1)2(1)2(1)
pdb|1OXK|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|D Chain D, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|F Chain F, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|H Chain H, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|J Chain J, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|L Chain L, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
Length = 134
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 71/142 (50%), Gaps = 24/142 (16%)
Query: 1022 LRILLAEDTPLIQIVACKILEKVG-ATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSP 1080
++IL+ ED + Q V ++L G + + DG +A + + +
Sbjct: 2 VKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKEL---------------- 45
Query: 1081 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL 1140
T +++I MD QMPK+DG +T IR+ PIVALTA A +++ K+CL
Sbjct: 46 --TSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLGYTS----PIVALTAFADDSNIKECL 99
Query: 1141 GVGMNAYLTKPIDSERMVSTIL 1162
GMN +L+KPI ++ TIL
Sbjct: 100 ESGMNGFLSKPIKRPKL-KTIL 120
>pdb|2R25|B Chain B, Complex Of Ypd1 And Sln1-R1 With Bound Mg2+ And Bef3-
Length = 133
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 71/142 (50%), Gaps = 24/142 (16%)
Query: 1022 LRILLAEDTPLIQIVACKILEKVG-ATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSP 1080
++IL+ ED + Q V ++L G + + DG +A + + +
Sbjct: 3 VKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKEL---------------- 46
Query: 1081 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL 1140
T +++I MD QMPK+DG +T IR+ PIVALTA A +++ K+CL
Sbjct: 47 --TSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLGYTS----PIVALTAFADDSNIKECL 100
Query: 1141 GVGMNAYLTKPIDSERMVSTIL 1162
GMN +L+KPI ++ TIL
Sbjct: 101 ESGMNGFLSKPIKRPKL-KTIL 121
>pdb|4EW8|A Chain A, Crystal Structure Of A C-Terminal Part Of Tyrosine Kinase
(Divl) From Caulobacter Crescentus Cb15 At 2.50 A
Resolution
pdb|4EW8|B Chain B, Crystal Structure Of A C-Terminal Part Of Tyrosine Kinase
(Divl) From Caulobacter Crescentus Cb15 At 2.50 A
Resolution
Length = 268
Score = 58.5 bits (140), Expect = 2e-08, Method: Composition-based stats.
Identities = 61/278 (21%), Positives = 109/278 (39%), Gaps = 47/278 (16%)
Query: 478 LISHLDARRKAEA-SNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQ 536
L S L R A A + K F+ N+S+ELRTP+ IIG E+L+ D ++ + V
Sbjct: 22 LQSALADRSAALAEAERLKRDFVGNVSYELRTPLTTIIGYSELLERADGISERGRNHVAA 81
Query: 537 IKKSSYAXXXXXXXXXXXSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLD 596
++ ++ +++++G+M LE + + L + V ++
Sbjct: 82 VRAAATQLARSIDDVLDMAQIDAGEMALEIEDIRVSDLLLNAQERALKDAQLGGVTLAVE 141
Query: 597 LSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKK 656
+++ +RGD R+ Q +L+ N+++ T G + L + E D
Sbjct: 142 CEEDVGL-IRGDGKRLAQTLDHLVENALRQTPPGGRV------TLSARRALGEVRLD--- 191
Query: 657 FGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRK 716
V DTG G+ +F+ F R
Sbjct: 192 ------------------------------VSDTGRGVPFHVQAHIFDRF------VGRD 215
Query: 717 HGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYL 754
GG GLGL++V+ LV GG + + + G+ +L
Sbjct: 216 RGGPGLGLALVKALVELHGGWVALESEPGNGSTFTCHL 253
>pdb|3SL2|A Chain A, Atp Forms A Stable Complex With The Essential Histidine
Kinase Walk (yycg) Domain
Length = 177
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 76/178 (42%), Gaps = 41/178 (23%)
Query: 578 LVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFT-SSGHIIIRG 636
++D F + H VE + +L D V D ++ Q+ N+I+N++K++ GH+
Sbjct: 12 IIDRFEMTKEQH-VEFIRNLPDR-DLYVEIDQDKITQVLDNIISNALKYSPEGGHVTF-- 67
Query: 637 WCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQ 696
+++ E+ +L L V D G GI +
Sbjct: 68 -----------------------------------SIDVNEEEEL-LYISVKDEGIGIPK 91
Query: 697 SKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYL 754
E VF+ F + D + TRK GGTGLGL+I + +V GG+I GT + L
Sbjct: 92 KDVEKVFDRFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWADSIEGKGTTITFTL 149
>pdb|2AYZ|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
817-949) Containing Phosphoreceiver Domain
Length = 133
Score = 54.3 bits (129), Expect = 4e-07, Method: Composition-based stats.
Identities = 34/142 (23%), Positives = 66/142 (46%), Gaps = 28/142 (19%)
Query: 1020 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGS 1079
+ + IL+ +D P+ + + L +G DG+ A+ L++
Sbjct: 7 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSK---------------- 50
Query: 1080 PSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKC 1139
D++L D MP MDGY T IR+ +P++ +TA+A+ ++++C
Sbjct: 51 -------NHIDIVLSDVNMPNMDGYRLTQRIRQL-----GLTLPVIGVTANALAEEKQRC 98
Query: 1140 LGVGMNAYLTKPIDSERMVSTI 1161
L GM++ L+KP+ + + T+
Sbjct: 99 LESGMDSCLSKPVTLDVIKQTL 120
>pdb|2AYX|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
700-949) Containing Linker Region And Phosphoreceiver
Domain
Length = 254
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 62/133 (46%), Gaps = 28/133 (21%)
Query: 1020 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGS 1079
+ + IL+ +D P+ + + L +G DG+ A+ L++
Sbjct: 128 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKN--------------- 172
Query: 1080 PSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKC 1139
D++L D MP MDGY T IR+ +P++ +TA+A+ ++++C
Sbjct: 173 --------HIDIVLSDVNMPNMDGYRLTQRIRQL-----GLTLPVIGVTANALAEEKQRC 219
Query: 1140 LGVGMNAYLTKPI 1152
L GM++ L+KP+
Sbjct: 220 LESGMDSCLSKPV 232
>pdb|1W25|A Chain A, Response Regulator Pled In Complex With C-digmp
pdb|1W25|B Chain B, Response Regulator Pled In Complex With C-digmp
pdb|2V0N|A Chain A, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
pdb|2V0N|B Chain B, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
Length = 459
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 1090 DLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149
D+IL+D MP MDG+ RK + + R+IP+V +TA D + L G + +LT
Sbjct: 47 DIILLDVMMPGMDGFTVC---RKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLT 103
Query: 1150 KPIDSERMVSTILRLTK 1166
KPID + + + LT+
Sbjct: 104 KPIDDVMLFARVRSLTR 120
Score = 37.0 bits (84), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 58/128 (45%), Gaps = 10/128 (7%)
Query: 1037 ACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE---TPDTPRFDLIL 1093
A L+ +G V +V D + + + L E R +++ P + + P DL++
Sbjct: 144 AAARLDGLGGRVLIVDDNERQAQRVAAELGVEH---RPVIESDPEKAKISAGGP-VDLVI 199
Query: 1094 MDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPID 1153
++ DG T +R SE R +P++A+ K L +G+N L++PID
Sbjct: 200 VNAAAKNFDGLRFTAALR---SEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPID 256
Query: 1154 SERMVSTI 1161
+ + + +
Sbjct: 257 PQELSARV 264
>pdb|2WB4|A Chain A, Activated Diguanylate Cyclase Pled In Complex With C-Di-Gmp
pdb|2WB4|B Chain B, Activated Diguanylate Cyclase Pled In Complex With C-Di-Gmp
Length = 459
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 1090 DLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149
D+IL+D MP MDG+ RK + + R+IP+V +TA D + L G + +LT
Sbjct: 48 DIILLDVMMPGMDGFTVC---RKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLT 104
Query: 1150 KPIDSERMVSTILRLTK 1166
KPID + + + LT+
Sbjct: 105 KPIDDVMLFARVRSLTR 121
Score = 37.0 bits (84), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 58/128 (45%), Gaps = 10/128 (7%)
Query: 1037 ACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE---TPDTPRFDLIL 1093
A L+ +G V +V D + + + L E R +++ P + + P DL++
Sbjct: 145 AAARLDGLGGRVLIVDDNERQAQRVAAELGVEH---RPVIESDPEKAKISAGGP-VDLVI 200
Query: 1094 MDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPID 1153
++ DG T +R SE R +P++A+ K L +G+N L++PID
Sbjct: 201 VNAAAKNFDGLRFTAALR---SEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPID 257
Query: 1154 SERMVSTI 1161
+ + + +
Sbjct: 258 PQELSARV 265
>pdb|1B00|A Chain A, Phob Receiver Domain From Escherichia Coli
pdb|1B00|B Chain B, Phob Receiver Domain From Escherichia Coli
pdb|2IYN|A Chain A, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|B Chain B, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|C Chain C, The Co-Factor-Induced Pre-Active Conformation In Phob
Length = 127
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 41/139 (29%), Positives = 62/139 (44%), Gaps = 26/139 (18%)
Query: 1023 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1082
RIL+ ED I+ + C +LE+ +G Q VEA + S
Sbjct: 4 RILVVEDEAPIREMVCFVLEQ---------NGFQPVEAED--------------YDSAVN 40
Query: 1083 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1142
+ P DLIL+D +P G + I+ + E R+IP+V LTA D + L
Sbjct: 41 QLNEPWPDLILLDWMLPGGSGIQF---IKHLKRESMTRDIPVVMLTARGEEEDRVRGLET 97
Query: 1143 GMNAYLTKPIDSERMVSTI 1161
G + Y+TKP + +V+ I
Sbjct: 98 GADDYITKPFSPKELVARI 116
>pdb|3M6M|D Chain D, Crystal Structure Of Rpff Complexed With Rec Domain Of Rpfc
pdb|3M6M|E Chain E, Crystal Structure Of Rpff Complexed With Rec Domain Of Rpfc
pdb|3M6M|F Chain F, Crystal Structure Of Rpff Complexed With Rec Domain Of Rpfc
Length = 143
Score = 51.6 bits (122), Expect = 3e-06, Method: Composition-based stats.
Identities = 38/155 (24%), Positives = 71/155 (45%), Gaps = 24/155 (15%)
Query: 1019 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1078
+ +R+L+A+D ++V ++LEK G V V Q ++A+ AE
Sbjct: 12 VRSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAM-----AEED-------- 58
Query: 1079 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1138
+D +++D MP M+G + ++R ++ G R P+V L+A +
Sbjct: 59 ----------YDAVIVDLHMPGMNGLDMLKQLRVMQAS-GMRYTPVVVLSADVTPEAIRA 107
Query: 1139 CLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEAT 1173
C G A+L KP+ + +++ T+ L + AT
Sbjct: 108 CEQAGARAFLAKPVVAAKLLDTLADLAVSTRQLAT 142
>pdb|1ZES|A Chain A, Bef3- Activated Phob Receiver Domain
pdb|1ZES|B Chain B, Bef3- Activated Phob Receiver Domain
pdb|1ZES|C Chain C, Bef3- Activated Phob Receiver Domain
Length = 125
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 62/139 (44%), Gaps = 26/139 (18%)
Query: 1023 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1082
RIL+ ED I+ + C +LE+ +G Q VEA + S
Sbjct: 4 RILVVEDEAPIREMVCFVLEQ---------NGFQPVEAED--------------YDSAVN 40
Query: 1083 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1142
+ P DLIL+D +P G + I+ + E R+IP+V LTA D + L
Sbjct: 41 QLNEPWPDLILLDWMLPGGSGIQF---IKHLKRESMTRDIPVVMLTARGEEEDRVRGLET 97
Query: 1143 GMNAYLTKPIDSERMVSTI 1161
G + Y+TKP + +V+ I
Sbjct: 98 GADDYITKPFSPKELVARI 116
>pdb|1K66|A Chain A, Crystal Structure Of The Cyanobacterial Phytochrome Response
Regulator, Rcpb
pdb|1K66|B Chain B, Crystal Structure Of The Cyanobacterial Phytochrome Response
Regulator, Rcpb
Length = 149
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 1084 PD-TPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1142
PD PR +IL+D +P DG E EI++ E + IP+V +T + D + C
Sbjct: 57 PDIAPRPAVILLDLNLPGTDGREVLQEIKQDEV---LKKIPVVIMTTSSNPKDIEICYSY 113
Query: 1143 GMNAYLTKPIDSERMVSTILRLTK 1166
+++Y+ KP++ +R+ T+ K
Sbjct: 114 SISSYIVKPLEIDRLTETVQTFIK 137
>pdb|2ZWM|A Chain A, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
pdb|2ZWM|B Chain B, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
Length = 130
Score = 48.1 bits (113), Expect = 3e-05, Method: Composition-based stats.
Identities = 40/151 (26%), Positives = 65/151 (43%), Gaps = 32/151 (21%)
Query: 1023 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1082
+IL+ +D I + L K G V DG +AVE + +
Sbjct: 4 KILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEEL------------------ 45
Query: 1083 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1142
+ DLIL+D +P DG E E+RK ++PI+ LTA D+ L +
Sbjct: 46 -----QPDLILLDIMLPNKDGVEVCREVRKK------YDMPIIMLTAKDSEIDKVIGLEI 94
Query: 1143 GMNAYLTKPIDSERMVSTILRLTKNMPSEAT 1173
G + Y+TKP + +++ R+ N+ + T
Sbjct: 95 GADDYVTKPFSTRELLA---RVKANLRRQLT 122
>pdb|3F6P|A Chain A, Crystal Structure Of Unphosphorelated Receiver Domain Of
Yycf
Length = 120
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 37/139 (26%), Positives = 60/139 (43%), Gaps = 29/139 (20%)
Query: 1023 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1082
+IL+ +D I + L K G V DG +AVE + +
Sbjct: 4 KILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEEL------------------ 45
Query: 1083 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1142
+ DLIL+D +P DG E E+RK ++PI+ LTA D+ L +
Sbjct: 46 -----QPDLILLDIMLPNKDGVEVCREVRKK------YDMPIIMLTAKDSEIDKVIGLEI 94
Query: 1143 GMNAYLTKPIDSERMVSTI 1161
G + Y+TKP + +++ +
Sbjct: 95 GADDYVTKPFSTRELLARV 113
>pdb|3DGE|C Chain C, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A Novel
Cis- Autophosphorylation Mechanism
pdb|3DGE|D Chain D, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A Novel
Cis- Autophosphorylation Mechanism
pdb|3DGF|C Chain C, Structure Of A Histidine Kinase-Response Regulator Complex
Reveals Insights Into Two-Component Signaling And A Novel
Cis- Autophosphorylation Mechanism
Length = 122
Score = 47.8 bits (112), Expect = 4e-05, Method: Composition-based stats.
Identities = 35/142 (24%), Positives = 65/142 (45%), Gaps = 26/142 (18%)
Query: 1023 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1082
++LL +D+ +++ + L+K +G + +EA N +A E L + +P
Sbjct: 4 KVLLVDDSAVLRKIVSFNLKK---------EGYEVIEAENGQIALEK-----LSEFTP-- 47
Query: 1083 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1142
DLI++D MP MDG+ ++K + + + IP++ LTA DE L +
Sbjct: 48 -------DLIVLDIMMPVMDGFTV---LKKLQEKEEWKRIPVIVLTAKGGEEDESLALSL 97
Query: 1143 GMNAYLTKPIDSERMVSTILRL 1164
G + KP + + + L
Sbjct: 98 GARKVMRKPFSPSQFIEEVKHL 119
>pdb|1S8N|A Chain A, Crystal Structure Of Rv1626 From Mycobacterium Tuberculosis
pdb|1SD5|A Chain A, Crystal Structure Of Rv1626
Length = 205
Score = 47.4 bits (111), Expect = 5e-05, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 60/140 (42%), Gaps = 30/140 (21%)
Query: 1023 RILLAEDTPLIQIVACKILEKVG-ATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1081
R+L+AED LI++ ++L + G V DG +AVE
Sbjct: 15 RVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVE---------------------- 52
Query: 1082 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1141
+ + DL++MD +MP+ DG +A EI R PIV LTA + ++
Sbjct: 53 -LAELHKPDLVIMDVKMPRRDGIDAASEIASK------RIAPIVVLTAFSQRDLVERARD 105
Query: 1142 VGMNAYLTKPIDSERMVSTI 1161
G AYL KP ++ I
Sbjct: 106 AGAMAYLVKPFSISDLIPAI 125
>pdb|2JB9|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e.
pdb|2JB9|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e
Length = 127
Score = 47.0 bits (110), Expect = 7e-05, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 26/139 (18%)
Query: 1023 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1082
RIL+ E I+ + C +LE+ +G Q VEA + S
Sbjct: 4 RILVVEAEAPIREMVCFVLEQ---------NGFQPVEAED--------------YDSAVN 40
Query: 1083 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1142
+ P DLIL++ +P G + I+ + E R+IP+V LTA D + L
Sbjct: 41 QLNEPWPDLILLEWMLPGGSGIQF---IKHLKRESMTRDIPVVMLTARGEEEDRVRGLET 97
Query: 1143 GMNAYLTKPIDSERMVSTI 1161
G + Y+TKP + +V+ I
Sbjct: 98 GADDYITKPFSPKELVARI 116
>pdb|1R62|A Chain A, Crystal Structure Of The C-terminal Domain Of The
Two-component System Transmitter Protein Nrii (ntrb)
Length = 160
Score = 47.0 bits (110), Expect = 7e-05, Method: Composition-based stats.
Identities = 44/171 (25%), Positives = 76/171 (44%), Gaps = 40/171 (23%)
Query: 571 LQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKF--TS 628
+ K E +V + S++ + NV + D ++P + DP ++ Q+ N++ N+++
Sbjct: 10 IHKVAERVVTLVSMELPD-NVRLIRDYDPSLPE-LAHDPDQIEQVLLNIVRNALQALGPE 67
Query: 629 SGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVD 688
G II+R AF+ L E +LA +V+
Sbjct: 68 GGEIILRT---------------------RTAFQLTLHG---------ERYRLAARIDVE 97
Query: 689 DTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIK 739
D G GI +T+F P + + GGTGLGLSI R L+++ G+I+
Sbjct: 98 DNGPGIPPHLQDTLFY------PMVSGREGGTGLGLSIARNLIDQHSGKIE 142
>pdb|2JBA|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 60/139 (43%), Gaps = 26/139 (18%)
Query: 1023 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1082
RIL+ ED I+ + C +LE+ +G Q VEA + S
Sbjct: 4 RILVVEDEAPIREMVCFVLEQ---------NGFQPVEAED--------------YDSAVN 40
Query: 1083 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1142
+ P DLIL+ +P G + +R+ E R+IP+V LTA D + L
Sbjct: 41 QLNEPWPDLILLAWMLPGGSGIQFIKHLRR---ESMTRDIPVVMLTARGEEEDRVRGLET 97
Query: 1143 GMNAYLTKPIDSERMVSTI 1161
G + +TKP + +V+ I
Sbjct: 98 GADDCITKPFSPKELVARI 116
>pdb|3Q9S|A Chain A, Crystal Structure Of Rra(1-215) From Deinococcus Radiodurans
Length = 249
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Query: 1090 DLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149
DLIL+D +P DG + +RK+ + +PI+ LTA ++ + LG+G + YL
Sbjct: 83 DLILLDLGLPDFDGGDVVQRLRKNSA------LPIIVLTARDTVEEKVRLLGLGADDYLI 136
Query: 1150 KPIDSERMVSTILRLTKNMPSEA 1172
KP + +++ + + SE+
Sbjct: 137 KPFHPDELLARVKVQLRQRTSES 159
>pdb|3GT7|A Chain A, Crystal Structure Of Signal Receiver Domain Of Signal
Transduction Histidine Kinase From Syntrophus
Aciditrophicus
Length = 154
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 59/141 (41%), Gaps = 26/141 (18%)
Query: 1024 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1083
IL+ ED+P ILE+ G V +G +AV L+
Sbjct: 10 ILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLS--------------------- 48
Query: 1084 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1143
R DLI+ D MP+MDGY R + + R IP++ LT + D + L G
Sbjct: 49 --LTRPDLIISDVLMPEMDGYALC---RWLKGQPDLRTIPVILLTILSDPRDVVRSLECG 103
Query: 1144 MNAYLTKPIDSERMVSTILRL 1164
+ ++TKP + S + RL
Sbjct: 104 ADDFITKPCKDVVLASHVKRL 124
>pdb|2JBA|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 60/139 (43%), Gaps = 26/139 (18%)
Query: 1023 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1082
RIL+ ED I+ + C +LE+ +G Q VEA + S
Sbjct: 4 RILVVEDEAPIREMVCFVLEQ---------NGFQPVEAED--------------YDSAVN 40
Query: 1083 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1142
+ P DLIL+ +P G + I+ + E R+IP+V LTA D + L
Sbjct: 41 QLNEPWPDLILLAWMLPGGSGIQF---IKHLKRESMTRDIPVVMLTARGEEEDRVRGLET 97
Query: 1143 GMNAYLTKPIDSERMVSTI 1161
G + +TKP + +V+ I
Sbjct: 98 GADDCITKPFSPKELVARI 116
>pdb|3EQ2|A Chain A, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3EQ2|B Chain B, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 20/119 (16%)
Query: 1043 KVGATVSVVPDGLQAVEALNRMLAAESSRRRSL--------LQGSPSETPDTPRFDLILM 1094
KV AT+ ++ D E+L L E S + L LQ SE PD L++
Sbjct: 3 KVSATLLIIDDDEVVRESLAAYL--EDSNFKVLQALNGLQGLQIFESEQPD-----LVIC 55
Query: 1095 DCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPID 1153
D + P++DG E IR++ SE PI+ L+ + +D + L +G YL KP++
Sbjct: 56 DLRXPQIDGLELIRRIRQTASE-----TPIIVLSGAGVXSDAVEALRLGAADYLIKPLE 109
>pdb|3F7A|A Chain A, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3F7A|B Chain B, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 20/121 (16%)
Query: 1041 LEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSL--------LQGSPSETPDTPRFDLI 1092
+ KV AT+ ++ D E+L L E S + L LQ SE PD L+
Sbjct: 1 MHKVSATLLIIDDDEVVRESLAAYL--EDSNFKVLQALNGLQGLQIFESEQPD-----LV 53
Query: 1093 LMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPI 1152
+ D + P++DG E IR++ SE PI+ L+ + +D + L +G YL KP+
Sbjct: 54 ICDLRXPQIDGLELIRRIRQTASE-----TPIIVLSGAGVMSDAVEALRLGAADYLIKPL 108
Query: 1153 D 1153
+
Sbjct: 109 E 109
>pdb|3GL9|A Chain A, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|B Chain B, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|C Chain C, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|D Chain D, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
Length = 122
Score = 45.1 bits (105), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/142 (23%), Positives = 64/142 (45%), Gaps = 26/142 (18%)
Query: 1023 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1082
++LL +D+ +++ + L+K +G + +EA N +A E L + +P
Sbjct: 4 KVLLVDDSAVLRKIVSFNLKK---------EGYEVIEAENGQIALEK-----LSEFTP-- 47
Query: 1083 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1142
DLI++ MP MDG+ ++K + + + IP++ LTA DE L +
Sbjct: 48 -------DLIVLXIMMPVMDGFTV---LKKLQEKEEWKRIPVIVLTAKGGEEDESLALSL 97
Query: 1143 GMNAYLTKPIDSERMVSTILRL 1164
G + KP + + + L
Sbjct: 98 GARKVMRKPFSPSQFIEEVKHL 119
>pdb|3A0R|A Chain A, Crystal Structure Of Histidine Kinase Thka (Tm1359) In
Complex With Response Regulator Protein Trra (Tm1360)
Length = 349
Score = 45.1 bits (105), Expect = 3e-04, Method: Composition-based stats.
Identities = 57/245 (23%), Positives = 97/245 (39%), Gaps = 54/245 (22%)
Query: 497 QFLANMSHELRTPMAAIIGLLEILKS--DDQLTNEQYSTVCQIKKSSYAXXXXXXXXXXX 554
+ A ++HE+R P+ I G + +K DD T ++Y + + S
Sbjct: 134 EMTARVAHEIRNPITIIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEIL---- 189
Query: 555 SKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQ 614
+ + LE TEF+L + + E+ +F + N++ + +DN V D R+ Q
Sbjct: 190 -EYSKERQVLEFTEFNLNELIREVYVLFEEKIRKMNIDFCFE-TDNEDLRVEADRTRIKQ 247
Query: 615 IFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMN 674
+ NL+ N+I+ T G + K+
Sbjct: 248 VLINLVQNAIEAT------------------------------GENGKIKITS------- 270
Query: 675 FREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV-NK 733
ED + V ++G I + E +F F T K GTGLGLSI R ++ ++
Sbjct: 271 --EDMYTKVRVSVWNSGPPIPEELKEKIFSPF------FTTKTQGTGLGLSICRKIIEDE 322
Query: 734 MGGEI 738
GG+I
Sbjct: 323 HGGKI 327
>pdb|1JLK|A Chain A, Crystal Structure Of The Mn(2+)-Bound Form Of Response
Regulator Rcp1
pdb|1JLK|B Chain B, Crystal Structure Of The Mn(2+)-Bound Form Of Response
Regulator Rcp1
Length = 147
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 21/129 (16%)
Query: 1024 ILLAEDTPLIQIVACKILEK--VGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1081
ILL ED+ + ++L+ + + ++ DGL A+ L + QG
Sbjct: 11 ILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQ-------------QG--- 54
Query: 1082 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1141
E ++PR +LIL+D +PK DG E EI+++ + IP+V LT D
Sbjct: 55 EYENSPRPNLILLDLNLPKKDGREVLAEIKQNPD---LKRIPVVVLTTSHNEDDVIASYE 111
Query: 1142 VGMNAYLTK 1150
+ +N YLTK
Sbjct: 112 LHVNCYLTK 120
>pdb|1I3C|A Chain A, Response Regulator For Cyanobacterial Phytochrome, Rcp1
pdb|1I3C|B Chain B, Response Regulator For Cyanobacterial Phytochrome, Rcp1
Length = 149
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 1082 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1141
E ++PR +LIL+D +PK DG E EI+++ + IP+V LT D
Sbjct: 55 EYENSPRPNLILLDLNLPKKDGREVLAEIKQNPD---LKRIPVVVLTTSHNEDDVIASYE 111
Query: 1142 VGMNAYLTK 1150
+ +N YLTK
Sbjct: 112 LHVNCYLTK 120
>pdb|1NXO|A Chain A, Micarec Ph7.0
pdb|1NXP|A Chain A, Micarec Ph4.5
pdb|1NXS|A Chain A, Micarec Ph4.9
pdb|1NXV|A Chain A, Micarec Ph 4.2
pdb|1NXW|A Chain A, Micarec Ph 5.1
pdb|1NXX|A Chain A, Micarec Ph 5.5
pdb|2A9O|A Chain A, Crystal Structures Of An Activated Yycf Homologue, The
Essential Response Regulator From S.Pneumoniae In Complex
With Bef3 And The Effect Of Ph On Bef3 Binding, Possible
Phosphate In The Active Site
pdb|2A9P|A Chain A, Medium Resolution Bef3 Bound Rr02-Rec
pdb|2A9Q|A Chain A, Low Resolution Structure Rr02-rec On Bef3 Bound
Length = 120
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 14/94 (14%)
Query: 1073 RSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAM 1132
R L+ +E PD +I++D +P++DG E IRK+ S +PI+ L+A
Sbjct: 35 REALEQFEAEQPD-----IIILDLMLPEIDGLEVAKTIRKTSS------VPILMLSAKDS 83
Query: 1133 NADEKKCLGVGMNAYLTKPIDSERM---VSTILR 1163
D+ L +G + Y+TKP + + V +LR
Sbjct: 84 EFDKVIGLELGADDYVTKPFSNRELQARVKALLR 117
>pdb|1KGS|A Chain A, Crystal Structure At 1.50 A Of An OmprPHOB HOMOLOG FROM
THERMOTOGA Maritima
Length = 225
Score = 44.3 bits (103), Expect = 4e-04, Method: Composition-based stats.
Identities = 43/155 (27%), Positives = 67/155 (43%), Gaps = 31/155 (20%)
Query: 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAV-EALNRMLAAESSRRRSLLQGSP 1080
+R+L+ ED + + + L+K TV V DG + ALN
Sbjct: 3 VRVLVVEDERDLADLITEALKKEXFTVDVCYDGEEGXYXALNE----------------- 45
Query: 1081 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL 1140
FD++++D +P DG+E I KS E G N P++ LTA + K L
Sbjct: 46 -------PFDVVILDIXLPVHDGWE----ILKSXRESGV-NTPVLXLTALSDVEYRVKGL 93
Query: 1141 GVGMNAYLTKPIDSERMVSTILRLTKNMPSEATGT 1175
G + YL KP D +++ + L + SE+ T
Sbjct: 94 NXGADDYLPKPFDLRELIARVRALIRR-KSESKST 127
>pdb|3NNN|A Chain A, Bef3 Activated Drrd Receiver Domain
pdb|3NNN|B Chain B, Bef3 Activated Drrd Receiver Domain
Length = 122
Score = 44.3 bits (103), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 1089 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1148
FD++++D +P DG+E I KS E G N P++ LTA + K L +G + YL
Sbjct: 47 FDVVILDIMLPVHDGWE----ILKSMRESGV-NTPVLMLTALSDVEYRVKGLNMGADDYL 101
Query: 1149 TKPIDSERMVSTILRLTK 1166
KP D +++ + L +
Sbjct: 102 PKPFDLRELIARVRALIR 119
>pdb|1MVO|A Chain A, Crystal Structure Of The Phop Receiver Domain From Bacillus
Subtilis
Length = 136
Score = 43.5 bits (101), Expect = 6e-04, Method: Composition-based stats.
Identities = 40/144 (27%), Positives = 63/144 (43%), Gaps = 31/144 (21%)
Query: 1023 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1082
+IL+ +D I + LE+ G V DG +A L+ + +E
Sbjct: 5 KILVVDDEESIVTLLQYNLERSGYDVITASDGEEA------------------LKKAETE 46
Query: 1083 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1142
PD LI++D +PK+DG E ++R+ + PI+ LTA D+ L +
Sbjct: 47 KPD-----LIVLDVMLPKLDGIEVCKQLRQQK-----LMFPILMLTAKDEEFDKVLGLEL 96
Query: 1143 GMNAYLTKPIDSERM---VSTILR 1163
G + Y+TKP + V ILR
Sbjct: 97 GADDYMTKPFSPREVNARVKAILR 120
>pdb|3C3M|A Chain A, Crystal Structure Of The N-Terminal Domain Of Response
Regulator Receiver Protein From Methanoculleus Marisnigri
Jr1
Length = 138
Score = 43.5 bits (101), Expect = 6e-04, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 58/138 (42%), Gaps = 26/138 (18%)
Query: 1024 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1083
IL+ +D+P I V LE+ G G + +EALN T
Sbjct: 6 ILVVDDSPXIVDVFVTXLERGGYRPITAFSGEECLEALN-------------------AT 46
Query: 1084 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1143
P DL+L+D DG+E + + +++ R+IP++ LTA + +E G
Sbjct: 47 PP----DLVLLDIXXEPXDGWET---LERIKTDPATRDIPVLXLTAKPLTPEEANEYGSY 99
Query: 1144 MNAYLTKPIDSERMVSTI 1161
+ Y+ KP ++ I
Sbjct: 100 IEDYILKPTTHHQLYEAI 117
>pdb|2OQR|A Chain A, The Structure Of The Response Regulator Regx3 From
Mycobacterium Tuberculosis
Length = 230
Score = 43.5 bits (101), Expect = 8e-04, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 58/138 (42%), Gaps = 29/138 (21%)
Query: 1024 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1083
+L+ ED + +L K G +VV DG A+ +R A
Sbjct: 7 VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGA----------------- 49
Query: 1084 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1143
D++L+D +P M G + ++R S +P++ +TA D+ L +G
Sbjct: 50 ------DIVLLDLMLPGMSGTDVCKQLRARSS------VPVIMVTARDSEIDKVVGLELG 97
Query: 1144 MNAYLTKPIDSERMVSTI 1161
+ Y+TKP + +++ I
Sbjct: 98 ADDYVTKPYSARELIARI 115
>pdb|3TMY|A Chain A, Chey From Thermotoga Maritima (Mn-Iii)
pdb|3TMY|B Chain B, Chey From Thermotoga Maritima (Mn-Iii)
pdb|4TMY|A Chain A, Chey From Thermotoga Maritima (mg-iv)
pdb|4TMY|B Chain B, Chey From Thermotoga Maritima (mg-iv)
pdb|1TMY|A Chain A, Chey From Thermotoga Maritima (Apo-I)
pdb|2TMY|A Chain A, Chey From Thermotoga Maritima (Apo-Ii)
Length = 120
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 33/146 (22%), Positives = 62/146 (42%), Gaps = 27/146 (18%)
Query: 1021 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSP 1080
G R+L+ +D ++++ I+ K G V A E++ R ++
Sbjct: 2 GKRVLIVDDAAFMRMMLKDIITKAGYEV-----------------AGEATNGREAVEKYK 44
Query: 1081 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL 1140
PD ++ MD MP+M+G +A EI K + N I+ +A A + +
Sbjct: 45 ELKPD-----IVTMDITMPEMNGIDAIKEIMKIDP-----NAKIIVCSAMGQQAMVIEAI 94
Query: 1141 GVGMNAYLTKPIDSERMVSTILRLTK 1166
G ++ KP R+V + +++K
Sbjct: 95 KAGAKDFIVKPFQPSRVVEALNKVSK 120
>pdb|3D36|A Chain A, How To Switch Off A Histidine Kinase: Crystal Structure Of
Geobacillus Stearothermophilus Kinb With The Inhibitor
Sda
pdb|3D36|B Chain B, How To Switch Off A Histidine Kinase: Crystal Structure Of
Geobacillus Stearothermophilus Kinb With The Inhibitor
Sda
Length = 244
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/279 (21%), Positives = 109/279 (39%), Gaps = 61/279 (21%)
Query: 496 SQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYAXXXXXXXXXXXS 555
+ A++SHE+R P+ A G + QL EQ + K+ YA +
Sbjct: 15 THLAASISHEIRNPLTAARGFI-------QLIEEQ--PLAADKRRQYARIAIEELDRAEA 65
Query: 556 KVES----GKMELENTE-FDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPG 610
+ K E E +++ E+E ++D+ + V+ L+ P +V G+
Sbjct: 66 IITDYLTFAKPAPETPEKLNVKLEIERVIDILRPLANMSCVDIQATLA---PFSVIGERE 122
Query: 611 RVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQAN 670
+ Q N++ N+I+ +G G + + N GR
Sbjct: 123 KFRQCLLNVMKNAIEAMPNG-----GTLQVYVSIDN-----------GRVL--------- 157
Query: 671 NAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTL 730
+ DTG G+ + + E + E + TT+ GTGLG+ +V +
Sbjct: 158 --------------IRIADTGVGMTKEQLERLGEPY-----FTTKGVKGTGLGMMVVYRI 198
Query: 731 VNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDAD 769
+ M G I++ + GT + +YL L +S S I D +
Sbjct: 199 IESMNGTIRIESEIHKGTTVSIYLPLASSPSSSTISDKE 237
>pdb|1YS3|A Chain A, Crystal Structure Of The Atp Binding Domain Of Prrb From
Mycobacterium Tuberculosis
pdb|1YS3|B Chain B, Crystal Structure Of The Atp Binding Domain Of Prrb From
Mycobacterium Tuberculosis
pdb|1YS3|C Chain C, Crystal Structure Of The Atp Binding Domain Of Prrb From
Mycobacterium Tuberculosis
pdb|1YSR|A Chain A, Crystal Structure Of Atp Binding Domain Of Prrb From
Mycobacterium Tuberculosis
pdb|1YSR|B Chain B, Crystal Structure Of Atp Binding Domain Of Prrb From
Mycobacterium Tuberculosis
pdb|1YSR|C Chain C, Crystal Structure Of Atp Binding Domain Of Prrb From
Mycobacterium Tuberculosis
Length = 150
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 687 VDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSP 746
+DD G G+ + + + VFE F +G +T H G+GLGL++V GG + +NSP
Sbjct: 82 IDDNGSGVPEGERQVVFERFSRG---STASHSGSGLGLALVAQQAQLHGGTASL--ENSP 136
Query: 747 GTLMQLYLLLGASS 760
+L L L S
Sbjct: 137 LGGARLVLRLPGPS 150
>pdb|3HEB|A Chain A, Crystal Structure Of Response Regulator Receiver Domain From
Rhodospirillum Rubrum
pdb|3HEB|B Chain B, Crystal Structure Of Response Regulator Receiver Domain From
Rhodospirillum Rubrum
Length = 152
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 1088 RFDLILMDCQMPKMDGYEATIEIRK--SESEHGARNIPIVALTAHAMNADEKKCLGVGMN 1145
R L+L+D +P G I+I K E+ H R+ P+V LT + ++C +G N
Sbjct: 59 RAQLVLLDLNLPDXTG----IDILKLVKENPHTRRS-PVVILTTTDDQREIQRCYDLGAN 113
Query: 1146 AYLTKPIDSERMVSTILRL 1164
Y+TKP++ E + I +L
Sbjct: 114 VYITKPVNYENFANAIRQL 132
>pdb|1BXD|A Chain A, Nmr Structure Of The Histidine Kinase Domain Of The E.
Coli Osmosensor Envz
Length = 161
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 685 FEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKN 744
F+V+D G GI + + +F+ F +GD + R GTGLGL+IV+ +V+ G +++
Sbjct: 80 FQVEDDGPGIAPEQRKHLFQPFVRGD--SARTISGTGLGLAIVQRIVDNHNGMLELGTSE 137
Query: 745 SPGTLMQLYL 754
G ++ +L
Sbjct: 138 RGGLSIRAWL 147
>pdb|2ZAY|A Chain A, Crystal Structure Of Response Regulator From Desulfuromonas
Acetoxidans
pdb|2ZAY|B Chain B, Crystal Structure Of Response Regulator From Desulfuromonas
Acetoxidans
Length = 147
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 1091 LILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1150
LI+ + MPK+ G + ++K+ +IP++AL+ A +E + L +G ++ K
Sbjct: 55 LIITEANMPKISGMDLFNSLKKNPQ---TASIPVIALSGRATAKEEAQLLDMGFIDFIAK 111
Query: 1151 PIDSERMVSTILRLTK 1166
P+++ R+ + I R+ K
Sbjct: 112 PVNAIRLSARIKRVLK 127
>pdb|1ZH2|A Chain A, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH2|B Chain B, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH4|A Chain A, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH4|B Chain B, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
Length = 121
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 20/99 (20%)
Query: 1053 DGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRK 1112
DG++ EA + +R LL+ + T + DLI++D +P DG E ++R+
Sbjct: 24 DGMRVFEA--------ETLQRGLLEAA------TRKPDLIILDLGLPDGDGIEFIRDLRQ 69
Query: 1113 SESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKP 1151
+ +P++ L+A + +D+ L G + YL+KP
Sbjct: 70 WSA------VPVIVLSARSEESDKIAALDAGADDYLSKP 102
>pdb|1NXT|A Chain A, Micarec Ph 4.0
pdb|2A9R|A Chain A, Rr02-Rec Phosphate In The Active Site
Length = 120
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 14/94 (14%)
Query: 1073 RSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAM 1132
R L+ +E PD +I++ +P++DG E IRK+ S +PI+ L+A
Sbjct: 35 REALEQFEAEQPD-----IIILXLMLPEIDGLEVAKTIRKTSS------VPILMLSAKDS 83
Query: 1133 NADEKKCLGVGMNAYLTKPIDSERM---VSTILR 1163
D+ L +G + Y+TKP + + V +LR
Sbjct: 84 EFDKVIGLELGADDYVTKPFSNRELQARVKALLR 117
>pdb|1YS6|A Chain A, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS6|B Chain B, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS7|A Chain A, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
pdb|1YS7|B Chain B, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
Length = 233
Score = 41.2 bits (95), Expect = 0.004, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Query: 1081 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL 1140
S T + P D I++D MP +DG +R +++ +P+ L+A + D L
Sbjct: 46 SATENRP--DAIVLDINMPVLDGVSVVTALRAMDND-----VPVCVLSARSSVDDRVAGL 98
Query: 1141 GVGMNAYLTKPIDSERMVSTILRLTKNMPSEATGTT 1176
G + YL KP +V+ + L + S AT ++
Sbjct: 99 EAGADDYLVKPFVLAELVARVKALLRRRGSTATSSS 134
>pdb|1U0S|Y Chain Y, Chemotaxis Kinase Chea P2 Domain In Complex With Response
Regulator Chey From The Thermophile Thermotoga Maritima
Length = 118
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 32/145 (22%), Positives = 61/145 (42%), Gaps = 27/145 (18%)
Query: 1021 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSP 1080
G R+L+ +D ++++ I+ K G V A E++ R ++
Sbjct: 1 GKRVLIVDDAAFMRMMLKDIITKAGYEV-----------------AGEATNGREAVEKYK 43
Query: 1081 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL 1140
PD ++ MD MP+M+G +A EI K + N I+ +A A + +
Sbjct: 44 ELKPD-----IVTMDITMPEMNGIDAIKEIMKIDP-----NAKIIVCSAMGQQAMVIEAI 93
Query: 1141 GVGMNAYLTKPIDSERMVSTILRLT 1165
G ++ KP R+V + +++
Sbjct: 94 KAGAKDFIVKPFQPSRVVEALNKVS 118
>pdb|3NHZ|A Chain A, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|B Chain B, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|C Chain C, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|D Chain D, Structure Of N-Terminal Domain Of Mtra
Length = 125
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 33/129 (25%), Positives = 52/129 (40%), Gaps = 29/129 (22%)
Query: 1023 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1082
RIL+ +D + + +L G +V+ DG QA+ A+ +
Sbjct: 7 RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVREL------------------ 48
Query: 1083 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1142
R DL+L+D +P M+G + +R +PIV LTA D L
Sbjct: 49 -----RPDLVLLDLMLPGMNGIDVCRVLRADSG------VPIVMLTAKTDTVDVVLGLES 97
Query: 1143 GMNAYLTKP 1151
G + Y+ KP
Sbjct: 98 GADDYIMKP 106
>pdb|3EOD|A Chain A, Crystal Structure Of N-Terminal Domain Of E. Coli Rssb
Length = 130
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 28/134 (20%)
Query: 1019 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1078
L G +IL+ ED + + + +GAT + DG+ A+E L
Sbjct: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGF-------------- 50
Query: 1079 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1138
TP DL++ D MP+M+G + IR + P++ ++A AD K
Sbjct: 51 ----TP-----DLMICDIAMPRMNGLKLLEHIRNRGDQT-----PVLVISATENMADIAK 96
Query: 1139 CLGVGMNAYLTKPI 1152
L +G+ L KP+
Sbjct: 97 ALRLGVEDVLLKPV 110
>pdb|3HZH|A Chain A, Crystal Structure Of The Chex-Chey-Bef3-Mg+2 Complex From
Borrelia Burgdorferi
Length = 157
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 1087 PRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNA 1146
P D++ + MPKMDG I E + AR I I AL + D CL G
Sbjct: 82 PNIDIVTLXITMPKMDGITCLSNIM--EFDKNARVIMISALGKEQLVKD---CLIKGAKT 136
Query: 1147 YLTKPIDSERMVSTILRL 1164
++ KP+D +++ ++ +
Sbjct: 137 FIVKPLDRAKVLQRVMSV 154
>pdb|3H1G|A Chain A, Crystal Structure Of Chey Mutant T84a Of Helicobacter Pylori
Length = 129
Score = 38.5 bits (88), Expect = 0.024, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 1091 LILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1150
+++ D MP+M+G + ++K S+ + IPI+ +TA A+ L G+N Y+ K
Sbjct: 54 VLITDWNMPEMNGLDL---VKKVRSDSRFKEIPIIMITAEGGKAEVITALKAGVNNYIVK 110
Query: 1151 P 1151
P
Sbjct: 111 P 111
>pdb|1K68|A Chain A, Crystal Structure Of The Phosphorylated Cyanobacterial
Phytochrome Response Regulator Rcpa
pdb|1K68|B Chain B, Crystal Structure Of The Phosphorylated Cyanobacterial
Phytochrome Response Regulator Rcpa
Length = 140
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 1082 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1141
E + R DLIL+ +PK DG E EI+ S+ + IP+V L+ D
Sbjct: 49 EYANASRPDLILLXLNLPKKDGREVLAEIK---SDPTLKRIPVVVLSTSINEDDIFHSYD 105
Query: 1142 VGMNAYLTK 1150
+ +N Y+TK
Sbjct: 106 LHVNCYITK 114
>pdb|3TO5|A Chain A, High Resolution Structure Of Chey3 From Vibrio Cholerae
Length = 134
Score = 38.1 bits (87), Expect = 0.026, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 1089 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1148
FD ++ D MP M G + IR E +++P++ +TA A + G+N Y+
Sbjct: 58 FDFVVTDWNMPGMQGIDLLKNIRADEE---LKHLPVLMITAEAKREQIIEAAQAGVNGYI 114
Query: 1149 TKP 1151
KP
Sbjct: 115 VKP 117
>pdb|3GWG|A Chain A, Crystal Structure Of Chey Of Helicobacter Pylori
pdb|3H1E|A Chain A, Crystal Structure Of Mg(2+) And Beh(3)(-)-Bound Chey Of Heli
Pylori
Length = 129
Score = 38.1 bits (87), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 1091 LILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1150
+++ D MP+M+G + ++K S+ + IPI+ +T A+ L G+N Y+ K
Sbjct: 54 VLITDWNMPEMNGLDL---VKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVK 110
Query: 1151 P 1151
P
Sbjct: 111 P 111
>pdb|3FFX|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
pdb|3FFX|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
Length = 128
Score = 38.1 bits (87), Expect = 0.031, Method: Composition-based stats.
Identities = 29/130 (22%), Positives = 57/130 (43%), Gaps = 25/130 (19%)
Query: 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1081
L+ L+ +D ++ + +L+++G + V + V+ALN++ A
Sbjct: 5 LKFLVVDDESTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGG------------- 49
Query: 1082 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1141
+ ++ D +MP MDG E IR ++ +P++ +TAHA +
Sbjct: 50 -------YGFVISDWRMPNMDGLELLKTIR---ADGAMSALPVLMVTAHAKKENIIAAAQ 99
Query: 1142 VGMNAYLTKP 1151
G + Y+ KP
Sbjct: 100 AGASGYVVKP 109
>pdb|1DCF|A Chain A, Crystal Structure Of The Receiver Domain Of The Ethylene
Receptor Of Arabidopsis Thaliana
Length = 136
Score = 37.7 bits (86), Expect = 0.034, Method: Composition-based stats.
Identities = 26/132 (19%), Positives = 60/132 (45%), Gaps = 24/132 (18%)
Query: 1021 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSP 1080
GL++L+ ++ + ++V +L +G V+ V E R+++ E
Sbjct: 7 GLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSN----EECLRVVSHEHK---------- 52
Query: 1081 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL 1140
++ MD MP ++ Y+ + I + ++ + +VAL+ + + ++KC+
Sbjct: 53 ----------VVFMDVCMPGVENYQIALRIHEKFTKQRHQRPLLVALSGNTDKSTKEKCM 102
Query: 1141 GVGMNAYLTKPI 1152
G++ L KP+
Sbjct: 103 SFGLDGVLLKPV 114
>pdb|3H5I|A Chain A, Crystal Structure Of The N-Terminal Domain Of A Response
RegulatorSENSORY BOXGGDEF 3-Domain Protein From
Carboxydothermus Hydrogenoformans
Length = 140
Score = 37.7 bits (86), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 62/143 (43%), Gaps = 30/143 (20%)
Query: 1023 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1082
+IL+ ED+ IL K G TV + G AVE + S
Sbjct: 7 KILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKV-----------------SGGW 49
Query: 1083 TPDTPRFDLILMDCQMPK-MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1141
P DLILMD ++ + MDG + + I++ +P+V LTAH A +K
Sbjct: 50 YP-----DLILMDIELGEGMDGVQTALAIQQ------ISELPVVFLTAHTEPAVVEKIRS 98
Query: 1142 VGMNAYLTKPIDSERMVSTILRL 1164
V Y+ K +E+++ TI+ +
Sbjct: 99 VTAYGYVMKS-ATEQVLITIVEM 120
>pdb|3A0T|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359) In
Complex With Adp And Mg Ion (Trigonal)
pdb|3A0W|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359) For Mad
Phasing (Nucleotide Free Form 2, Orthorombic)
pdb|3A0W|B Chain B, Catalytic Domain Of Histidine Kinase Thka (Tm1359) For Mad
Phasing (Nucleotide Free Form 2, Orthorombic)
pdb|3A0X|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 1: Ammomium Phosphate, Monoclinic)
pdb|3A0Y|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 3: 1,2-Propanediol, Orthorombic)
pdb|3A0Y|B Chain B, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 3: 1,2-Propanediol, Orthorombic)
pdb|3A0Z|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 4: Isopropanol, Orthorombic)
pdb|3A0Z|B Chain B, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 4: Isopropanol, Orthorombic)
Length = 152
Score = 37.7 bits (86), Expect = 0.037, Method: Composition-based stats.
Identities = 43/176 (24%), Positives = 71/176 (40%), Gaps = 47/176 (26%)
Query: 564 LENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNS 623
+E TEF+L + + E+ +F + N++ + +DN V D R+ Q+ NL+ N+
Sbjct: 1 MEFTEFNLNELIREVYVLFEEKIRKMNIDFCFE-TDNEDLRVEADRTRIKQVLINLVQNA 59
Query: 624 IKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLAL 683
I+ T G + K+ ED +
Sbjct: 60 IEAT------------------------------GENGKIKITS---------EDMYTKV 80
Query: 684 CFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV-NKMGGEI 738
V ++G I + E +F F T K GTGLGLSI R ++ ++ GG+I
Sbjct: 81 RVSVWNSGPPIPEELKEKIFSPF------FTTKTQGTGLGLSICRKIIEDEHGGKI 130
>pdb|3KHT|A Chain A, Crystal Structure Of Response Regulator From Hahella
Chejuensis
Length = 144
Score = 37.4 bits (85), Expect = 0.047, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 1088 RFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAY 1147
++DLI++D +P +G+E +RK + ++ PIV LT + + K+C G ++
Sbjct: 51 KYDLIILDIGLPIANGFEVXSAVRKPGAN---QHTPIVILTDNVSDDRAKQCXAAGASSV 107
Query: 1148 LTK 1150
+ K
Sbjct: 108 VDK 110
>pdb|1DZ3|A Chain A, Domain-Swapping In The Sporulation Response Regulator Spo0a
Length = 130
Score = 37.4 bits (85), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 1088 RFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAY 1147
R D++L+D MP +DG A +E ++ EH ++ LTA KK + +G + +
Sbjct: 48 RPDILLLDIIMPHLDGL-AVLERIRAGFEHQPN---VIMLTAFGQEDVTKKAVELGASYF 103
Query: 1148 LTKPIDSERMVSTI 1161
+ KP D E + I
Sbjct: 104 ILKPFDMENLAHHI 117
>pdb|3CZ5|A Chain A, Crystal Structure Of Two-component Response Regulator, Luxr
Family, From Aurantimonas Sp. Si85-9a1
pdb|3CZ5|B Chain B, Crystal Structure Of Two-component Response Regulator, Luxr
Family, From Aurantimonas Sp. Si85-9a1
pdb|3CZ5|C Chain C, Crystal Structure Of Two-component Response Regulator, Luxr
Family, From Aurantimonas Sp. Si85-9a1
pdb|3CZ5|D Chain D, Crystal Structure Of Two-component Response Regulator, Luxr
Family, From Aurantimonas Sp. Si85-9a1
Length = 153
Score = 37.0 bits (84), Expect = 0.058, Method: Composition-based stats.
Identities = 39/143 (27%), Positives = 62/143 (43%), Gaps = 26/143 (18%)
Query: 1019 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1078
L RI+L +D P+++ +++E+ +VV + A EA R +
Sbjct: 3 LSTARIMLVDDHPIVREGYRRLIERRPG-YAVVAEAADAGEAY-----------RLYRET 50
Query: 1079 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1138
+P D+++MD +P G EAT IR+ + GA I I T H +A K
Sbjct: 51 TP---------DIVVMDLTLPGPGGIEATRHIRQWD---GAARILI--FTMHQGSAFALK 96
Query: 1139 CLGVGMNAYLTKPIDSERMVSTI 1161
G + Y+TK D +V I
Sbjct: 97 AFEAGASGYVTKSSDPAELVQAI 119
>pdb|3EQZ|A Chain A, Crystal Structure Of A Response Regulator From Colwellia
Psychrerythraea
pdb|3EQZ|B Chain B, Crystal Structure Of A Response Regulator From Colwellia
Psychrerythraea
Length = 135
Score = 37.0 bits (84), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 1090 DLILMDCQMPKMDGYEATIEIRKSESEHG--ARNIPIVALTAHAMNADEKKCLGVGMNAY 1147
D+I++D MP MDG IE+ + +EH A I I + +++ E L G+N
Sbjct: 48 DIIILDLMMPDMDG----IEVIRHLAEHKSPASLILISGYDSGVLHSAETLALSCGLNVI 103
Query: 1148 --LTKPIDSERMVSTILRLTK 1166
TKPI++E + + L+
Sbjct: 104 NTFTKPINTEVLTCFLTSLSN 124
>pdb|2CHY|A Chain A, Three-Dimensional Structure Of Chey, The Response Regulator
Of Bacterial Chemotaxis
Length = 128
Score = 36.6 bits (83), Expect = 0.077, Method: Composition-based stats.
Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 25/130 (19%)
Query: 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1081
L+ L+ +D ++ + +L+++G + V + V+ALN++ A
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGG------------- 49
Query: 1082 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1141
F I+ D MP MDG E IR ++ +P++ +TA A +
Sbjct: 50 -------FGFIICDWNMPNMDGLELLKTIR---ADSAMSALPVLMVTAEAKKENIIAAAQ 99
Query: 1142 VGMNAYLTKP 1151
G + Y+ KP
Sbjct: 100 AGASGYVVKP 109
>pdb|1P6U|A Chain A, Nmr Structure Of The Bef3-Activated Structure Of The
Response Regulator Chey2-Mg2+ From Sinorhizobium Meliloti
pdb|1P6Q|A Chain A, Nmr Structure Of The Response Regulator Chey2 From
Sinorhizobium Meliloti, Complexed With Mg++
Length = 129
Score = 36.6 bits (83), Expect = 0.089, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 1091 LILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1150
L++ D MPKMDG +R + + A + LTA A +K +G N L K
Sbjct: 54 LVISDFNMPKMDGLGLLQAVRANPATKKA---AFIILTAQGDRALVQKAAALGANNVLAK 110
Query: 1151 PIDSERMVSTI 1161
P E+M + I
Sbjct: 111 PFTIEKMKAAI 121
>pdb|1DC7|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 10/89 (11%)
Query: 1075 LLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNA 1134
+L S+TPD ++L D +MP MDG +I++ +P++ +TAH+
Sbjct: 39 VLAALASKTPD-----VLLSDIRMPGMDGLALLKQIKQRHP-----MLPVIIMTAHSDLD 88
Query: 1135 DEKKCLGVGMNAYLTKPIDSERMVSTILR 1163
G YL KP D + V+ + R
Sbjct: 89 AAVSAYQQGAFDYLPKPFDIDEAVALVER 117
>pdb|2FKA|A Chain A, Crystal Structure Of Mg(2+) And Bef(3)(-)-Bound Chey In
Complex With Chez(200-214) Solved From A F432 Crystal
Grown In Caps (Ph 10.5)
pdb|2FLK|A Chain A, Crystal Structure Of Chey In Complex With Chez(200-214)
Solved From A F432 Crystal Grown In Caps (Ph 10.5)
pdb|2FLW|A Chain A, Crystal Structure Of Mg2+ And Bef3- Ound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Hepes (ph 7.5)
pdb|2FMF|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Hepes (ph 7.5)
pdb|2FMH|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Tris (Ph 8.4)
pdb|2FMI|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Tris (Ph 8.4)
pdb|2FMK|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A P2(1)2(1)2 Crystal Grown
In Mes (Ph 6.0)
Length = 129
Score = 36.2 bits (82), Expect = 0.11, Method: Composition-based stats.
Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 25/130 (19%)
Query: 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1081
L+ L+ +D ++ + +L+++G + V + V+ALN++ A
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGG------------- 50
Query: 1082 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1141
F I+ D MP MDG E IR ++ +P++ +TA A +
Sbjct: 51 -------FGFIISDWNMPNMDGLELLKTIR---ADSAMSALPVLMVTAEAKKENIIAAAQ 100
Query: 1142 VGMNAYLTKP 1151
G + Y+ KP
Sbjct: 101 AGASGYVVKP 110
>pdb|2CHE|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And Mechanism Of
Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2CHF|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And The Mechanism
Of Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2PL9|A Chain A, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|B Chain B, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|C Chain C, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PMC|A Chain A, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|B Chain B, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|C Chain C, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|D Chain D, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
Length = 128
Score = 36.2 bits (82), Expect = 0.11, Method: Composition-based stats.
Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 25/130 (19%)
Query: 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1081
L+ L+ +D ++ + +L+++G + V + V+ALN++ A
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGG------------- 49
Query: 1082 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1141
F I+ D MP MDG E IR ++ +P++ +TA A +
Sbjct: 50 -------FGFIISDWNMPNMDGLELLKTIR---ADSAMSALPVLMVTAEAKKENIIAAAQ 99
Query: 1142 VGMNAYLTKP 1151
G + Y+ KP
Sbjct: 100 AGASGYVVKP 109
>pdb|3CG4|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein (Chey- Like) From Methanospirillum Hungatei Jf-1
Length = 142
Score = 36.2 bits (82), Expect = 0.12, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Query: 1091 LILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG--MNAYL 1148
++L+D P DG++ I + E G I IV LTA NA + K +G+ + Y+
Sbjct: 54 VVLLDIXXPGXDGWDTIRAILDNSLEQG---IAIVXLTAK--NAPDAKXIGLQEYVVDYI 108
Query: 1149 TKPIDSERMV 1158
TKP D+E ++
Sbjct: 109 TKPFDNEDLI 118
>pdb|1KRW|A Chain A, Solution Structure And Backbone Dynamics Of Beryllofluoride-
Activated Ntrc Receiver Domain
Length = 124
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 10/89 (11%)
Query: 1075 LLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNA 1134
+L S+TPD ++L D +MP MDG +I++ +P++ +TAH+
Sbjct: 39 VLAALASKTPD-----VLLSDIRMPGMDGLALLKQIKQRHP-----MLPVIIMTAHSDLD 88
Query: 1135 DEKKCLGVGMNAYLTKPIDSERMVSTILR 1163
G YL KP D + V+ + R
Sbjct: 89 AAVSAYQQGAFDYLPKPFDIDEAVALVER 117
>pdb|1J56|A Chain A, Minimized Average Structure Of Beryllofluoride-Activated
Ntrc Receiver Domain: Model Structure Incorporating
Active Site Contacts
pdb|1KRX|A Chain A, Solution Structure Of Beryllofluoride-Activated Ntrc
Receiver Domain: Model Structures Incorporating Active
Site Contacts
pdb|1NTR|A Chain A, Solution Structure Of The N-Terminal Receiver Domain Of Ntrc
Length = 124
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 10/89 (11%)
Query: 1075 LLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNA 1134
+L S+TPD ++L D +MP MDG +I++ +P++ +TAH+
Sbjct: 39 VLAALASKTPD-----VLLSDIRMPGMDGLALLKQIKQRHP-----MLPVIIMTAHSDLD 88
Query: 1135 DEKKCLGVGMNAYLTKPIDSERMVSTILR 1163
G YL KP D + V+ + R
Sbjct: 89 AAVSAYQQGAFDYLPKPFDIDEAVALVER 117
>pdb|2JVJ|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant I90a From Bacillus Subtilis
Length = 132
Score = 35.8 bits (81), Expect = 0.13, Method: Composition-based stats.
Identities = 34/149 (22%), Positives = 64/149 (42%), Gaps = 31/149 (20%)
Query: 1023 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1082
+IL+ +D I+I+ ++ K G +GLQA++ + + E
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTK------------------E 46
Query: 1083 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1142
PD L+L+D ++P MDG E ++ + NI ++ +TA+ ++ +
Sbjct: 47 RPD-----LVLLDMKIPGMDGIEILKRMKVID-----ENIRVIIMTAYGELDMAQESKEL 96
Query: 1143 GMNAYLTKPIDSERM---VSTILRLTKNM 1168
G + KP D + + V L L N+
Sbjct: 97 GALTHFAKPFDIDEIRDAVKKYLPLKSNL 125
>pdb|3FFW|A Chain A, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
pdb|3FFW|B Chain B, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
Length = 128
Score = 35.8 bits (81), Expect = 0.15, Method: Composition-based stats.
Identities = 28/130 (21%), Positives = 57/130 (43%), Gaps = 25/130 (19%)
Query: 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1081
L+ L+ +D ++ + +L+++G + V + V+ALN++ A
Sbjct: 5 LKFLVVDDQSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGG------------- 49
Query: 1082 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1141
+ ++ D +MP MDG E IR ++ +P++ +TA+A +
Sbjct: 50 -------YGFVISDWKMPNMDGLELLKTIR---ADGAMSALPVLMVTAYAKKENIIAAAQ 99
Query: 1142 VGMNAYLTKP 1151
G + Y+ KP
Sbjct: 100 AGASGYVVKP 109
>pdb|3T6K|A Chain A, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At 1.86
A Resolution
pdb|3T6K|B Chain B, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At 1.86
A Resolution
Length = 136
Score = 35.4 bits (80), Expect = 0.17, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 1090 DLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149
D ++ D +P +DGY +R+ + +PI+ LTA + + G N YL
Sbjct: 50 DALICDVLLPGIDGYTLCKRVRQHPL---TKTLPILXLTAQGDISAKIAGFEAGANDYLA 106
Query: 1150 KPIDSERMV 1158
KP + + +V
Sbjct: 107 KPFEPQELV 115
>pdb|1F51|E Chain E, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|F Chain F, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|G Chain G, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|H Chain H, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
Length = 119
Score = 35.4 bits (80), Expect = 0.17, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 59/135 (43%), Gaps = 28/135 (20%)
Query: 1023 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1082
+IL+ +D I+I+ ++ K G +GLQA++ + + E
Sbjct: 3 KILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTK------------------E 44
Query: 1083 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1142
PD L+L+D ++P MDG E ++ + NI ++ +TA+ ++ +
Sbjct: 45 RPD-----LVLLDMKIPGMDGIEILKRMKVID-----ENIRVIIMTAYGELDMIQESKEL 94
Query: 1143 GMNAYLTKPIDSERM 1157
G + KP D + +
Sbjct: 95 GALTHFAKPFDIDEI 109
>pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced By
Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By Leu
(Stabilizing Mutations In Helix 4)
pdb|1UDR|B Chain B, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced By
Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By Leu
(Stabilizing Mutations In Helix 4)
pdb|1UDR|C Chain C, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced By
Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By Leu
(Stabilizing Mutations In Helix 4)
pdb|1UDR|D Chain D, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced By
Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By Leu
(Stabilizing Mutations In Helix 4)
Length = 129
Score = 35.4 bits (80), Expect = 0.18, Method: Composition-based stats.
Identities = 29/130 (22%), Positives = 56/130 (43%), Gaps = 25/130 (19%)
Query: 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1081
L+ L+ +D ++ + +L+++G + V + V+ALN++ A
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGG------------- 50
Query: 1082 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1141
+ ++ D MP MDG E IR ++ +P++ +TA A + K
Sbjct: 51 -------YGFVISDWNMPNMDGLELLKTIR---ADGAMSALPVLMVTAEADAENIKALAQ 100
Query: 1142 VGMNAYLTKP 1151
G + Y+ KP
Sbjct: 101 AGASGYVVKP 110
>pdb|2JVK|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant L66a From Bacillus Subtilis
Length = 132
Score = 35.4 bits (80), Expect = 0.20, Method: Composition-based stats.
Identities = 34/149 (22%), Positives = 64/149 (42%), Gaps = 31/149 (20%)
Query: 1023 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1082
+IL+ +D I+I+ ++ K G +GLQA++ + + E
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTK------------------E 46
Query: 1083 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1142
PD L+L+D ++P MDG E ++ + NI ++ +TA+ ++ +
Sbjct: 47 RPD-----LVLLDMKIPGMDGIEIAKRMKVID-----ENIRVIIMTAYGELDMIQESKEL 96
Query: 1143 GMNAYLTKPIDSERM---VSTILRLTKNM 1168
G + KP D + + V L L N+
Sbjct: 97 GALTHFAKPFDIDEIRDAVKKYLPLKSNL 125
>pdb|3GRC|A Chain A, Crystal Structure Of A Sensor Protein From Polaromonas Sp.
Js666
pdb|3GRC|B Chain B, Crystal Structure Of A Sensor Protein From Polaromonas Sp.
Js666
pdb|3GRC|C Chain C, Crystal Structure Of A Sensor Protein From Polaromonas Sp.
Js666
pdb|3GRC|D Chain D, Crystal Structure Of A Sensor Protein From Polaromonas Sp.
Js666
Length = 140
Score = 35.4 bits (80), Expect = 0.21, Method: Composition-based stats.
Identities = 37/153 (24%), Positives = 59/153 (38%), Gaps = 27/153 (17%)
Query: 1023 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1082
RIL+ ED P I + LEK G V QA+E + R A +
Sbjct: 8 RILICEDDPDIARLLNLXLEKGGFDSDXVHSAAQALEQVARRPYAAXT------------ 55
Query: 1083 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNAD-EKKCLG 1141
+D +P DG IR + R++ IV ++A+A + E
Sbjct: 56 -----------VDLNLPDQDGVSL---IRALRRDSRTRDLAIVVVSANAREGELEFNSQP 101
Query: 1142 VGMNAYLTKPIDSERMVSTILRLTKNMPSEATG 1174
+ ++ +L KPID ++ ++ R N G
Sbjct: 102 LAVSTWLEKPIDENLLILSLHRAIDNXAEGKEG 134
>pdb|1SRR|A Chain A, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|B Chain B, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|C Chain C, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1PEY|A Chain A, Crystal Structure Of The Response Regulator Spo0f Complexed
With Mn2+
pdb|1PEY|B Chain B, Crystal Structure Of The Response Regulator Spo0f Complexed
With Mn2+
pdb|1PEY|C Chain C, Crystal Structure Of The Response Regulator Spo0f Complexed
With Mn2+
Length = 124
Score = 35.4 bits (80), Expect = 0.21, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 59/135 (43%), Gaps = 28/135 (20%)
Query: 1023 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1082
+IL+ +D I+I+ ++ K G +GLQA++ + + E
Sbjct: 5 KILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTK------------------E 46
Query: 1083 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1142
PD L+L+D ++P MDG E ++ + NI ++ +TA+ ++ +
Sbjct: 47 RPD-----LVLLDMKIPGMDGIEILKRMKVID-----ENIRVIIMTAYGELDMIQESKEL 96
Query: 1143 GMNAYLTKPIDSERM 1157
G + KP D + +
Sbjct: 97 GALTHFAKPFDIDEI 111
>pdb|2RDM|A Chain A, Crystal Structure Of Response Regulator Receiver Protein
From Sinorhizobium Medicae Wsm419
pdb|2RDM|B Chain B, Crystal Structure Of Response Regulator Receiver Protein
From Sinorhizobium Medicae Wsm419
pdb|2RDM|C Chain C, Crystal Structure Of Response Regulator Receiver Protein
From Sinorhizobium Medicae Wsm419
Length = 132
Score = 35.0 bits (79), Expect = 0.22, Method: Composition-based stats.
Identities = 40/146 (27%), Positives = 64/146 (43%), Gaps = 28/146 (19%)
Query: 1019 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1078
LE + ILLA+D ++ + L G V+ V G +A+E L A + G
Sbjct: 3 LEAVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEXLKSGAA---------IDG 53
Query: 1079 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1138
++ RF CQ P DG++ R+ + N PIV ++ HA A E
Sbjct: 54 VVTDI----RF------CQPP--DGWQVARVAREIDP-----NXPIVYISGHA--ALEWA 94
Query: 1139 CLGVGMNAYLTKPIDSERMVSTILRL 1164
GV + L KP S ++++ + +L
Sbjct: 95 SNGVPDSIILEKPFTSAQLITAVSQL 120
>pdb|3H1F|A Chain A, Crystal Structure Of Chey Mutant D53a Of Helicobacter Pylori
Length = 129
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 1097 QMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKP 1151
MP+M+G + ++K S+ + IPI+ +T A+ L G+N Y+ KP
Sbjct: 60 NMPEMNGLDL---VKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKP 111
>pdb|3RVN|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At 59
And 89: N59d And E89y
pdb|3RVN|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At 59
And 89: N59d And E89y
pdb|3RVO|A Chain A, Structure Of Chey-Mn2+ Complex With Substitutions At 59 And
89: N59d E89y
Length = 132
Score = 35.0 bits (79), Expect = 0.26, Method: Composition-based stats.
Identities = 28/130 (21%), Positives = 56/130 (43%), Gaps = 25/130 (19%)
Query: 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1081
L+ L+ +D ++ + +L+++G + V + V+ALN++ A
Sbjct: 9 LKFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGG------------- 53
Query: 1082 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1141
+ ++ D MP MDG E IR ++ +P++ +TA+A +
Sbjct: 54 -------YGFVISDWDMPNMDGLELLKTIR---ADGAMSALPVLMVTAYAKKENIIAAAQ 103
Query: 1142 VGMNAYLTKP 1151
G + Y+ KP
Sbjct: 104 AGASGYVVKP 113
>pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t
pdb|1AB5|B Chain B, Structure Of Chey Mutant F14n, V21t
Length = 125
Score = 34.7 bits (78), Expect = 0.31, Method: Composition-based stats.
Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 25/130 (19%)
Query: 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1081
L+ L+ +D ++ + +L+++G + V + V+ALN++ A
Sbjct: 2 LKFLVVDDNSTMRRITRNLLKELG--FNNVEEAEDGVDALNKLQAGG------------- 46
Query: 1082 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1141
+ ++ D MP MDG E IR ++ +P++ +TA A +
Sbjct: 47 -------YGFVISDWNMPNMDGLELLKTIR---ADGAMSALPVLMVTAEAKKENIIAAAQ 96
Query: 1142 VGMNAYLTKP 1151
G + Y+ KP
Sbjct: 97 AGASGYVVKP 106
>pdb|1PUX|A Chain A, Nmr Solution Structure Of Bef3-Activated Spo0f, 20
Conformers
pdb|1FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
20 Structures
pdb|1NAT|A Chain A, Crystal Structure Of Spoof From Bacillus Subtilis
pdb|2FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
Minimized Average Structure
Length = 124
Score = 34.7 bits (78), Expect = 0.32, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 59/135 (43%), Gaps = 28/135 (20%)
Query: 1023 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1082
+IL+ +D I+I+ ++ K G +GLQA++ + + E
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTK------------------E 46
Query: 1083 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1142
PD L+L+D ++P MDG E ++ + NI ++ +TA+ ++ +
Sbjct: 47 RPD-----LVLLDMKIPGMDGIEILKRMKVID-----ENIRVIIMTAYGELDMIQESKEL 96
Query: 1143 GMNAYLTKPIDSERM 1157
G + KP D + +
Sbjct: 97 GALTHFAKPFDIDEI 111
>pdb|3Q15|C Chain C, Crystal Structure Of Raph Complexed With Spo0f
pdb|3Q15|D Chain D, Crystal Structure Of Raph Complexed With Spo0f
Length = 126
Score = 34.7 bits (78), Expect = 0.34, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 59/135 (43%), Gaps = 28/135 (20%)
Query: 1023 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1082
+IL+ +D I+I+ ++ K G +GLQA++ + + E
Sbjct: 7 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTK------------------E 48
Query: 1083 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1142
PD L+L+D ++P MDG E ++ + NI ++ +TA+ ++ +
Sbjct: 49 RPD-----LVLLDMKIPGMDGIEILKRMKVID-----ENIRVIIMTAYGELDMIQESKEL 98
Query: 1143 GMNAYLTKPIDSERM 1157
G + KP D + +
Sbjct: 99 GALTHFAKPFDIDEI 113
>pdb|1ZGZ|A Chain A, Crystal Structure Of The Receiver Domain Of Tmao Respiratory
System Response Regulator Torr
pdb|1ZGZ|B Chain B, Crystal Structure Of The Receiver Domain Of Tmao Respiratory
System Response Regulator Torr
pdb|1ZGZ|C Chain C, Crystal Structure Of The Receiver Domain Of Tmao Respiratory
System Response Regulator Torr
pdb|1ZGZ|D Chain D, Crystal Structure Of The Receiver Domain Of Tmao Respiratory
System Response Regulator Torr
Length = 122
Score = 34.7 bits (78), Expect = 0.34, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 52/141 (36%), Gaps = 29/141 (20%)
Query: 1024 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1083
I++ ED P+ Q + G TVSV G E
Sbjct: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASG-----------------------AGLREI 41
Query: 1084 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1143
DLIL+D +P +G T +R+ + + I+ +T + D L G
Sbjct: 42 XQNQSVDLILLDINLPDENGLXLTRALRERST------VGIILVTGRSDRIDRIVGLEXG 95
Query: 1144 MNAYLTKPIDSERMVSTILRL 1164
+ Y+TKP++ +V + L
Sbjct: 96 ADDYVTKPLELRELVVRVKNL 116
>pdb|2QVG|A Chain A, The Crystal Structure Of A Two-Component Response Regulator
From Legionella Pneumophila
Length = 143
Score = 34.7 bits (78), Expect = 0.35, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 1065 LAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPI 1124
+A ++ L G E P+ LIL+D +PK +G E E+R S +I +
Sbjct: 38 IAKSGNQALDXLYGRNKENKIHPK--LILLDINIPKXNGIEFLKELRDDSS---FTDIEV 92
Query: 1125 VALTAHAMNADEKKCLGVGMNAYLTKPID 1153
LTA + D+ + + +L KP+D
Sbjct: 93 FVLTAAYTSKDKLAFESLNIRGHLIKPLD 121
>pdb|1QMP|A Chain A, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|B Chain B, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|C Chain C, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|D Chain D, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
Length = 130
Score = 34.7 bits (78), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 1088 RFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAY 1147
R D++L+ MP +DG A +E ++ EH ++ LTA KK + +G + +
Sbjct: 48 RPDILLLXIIMPHLDGL-AVLERIRAGFEHQPN---VIMLTAFGQEDVTKKAVELGASYF 103
Query: 1148 LTKPIDSERMVSTI 1161
+ KP D E + I
Sbjct: 104 ILKPFDMENLAHHI 117
>pdb|1MIH|A Chain A, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation Of
The E. Coli Chemotaxis Response Regulator Chey
pdb|1MIH|B Chain B, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation Of
The E. Coli Chemotaxis Response Regulator Chey
Length = 129
Score = 34.7 bits (78), Expect = 0.36, Method: Composition-based stats.
Identities = 28/130 (21%), Positives = 56/130 (43%), Gaps = 25/130 (19%)
Query: 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1081
L+ L+ +D ++ + +L+++G + V + V+ALN++ A
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGG------------- 50
Query: 1082 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1141
+ ++ D +MP MDG E IR ++ +P++ +TA A +
Sbjct: 51 -------YGFVISDWRMPNMDGLELLKTIR---ADGAMSALPVLMVTAEAKKENIIAAAQ 100
Query: 1142 VGMNAYLTKP 1151
G + Y+ KP
Sbjct: 101 AGASGYVVKP 110
>pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant
Length = 128
Score = 34.3 bits (77), Expect = 0.39, Method: Composition-based stats.
Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 25/130 (19%)
Query: 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1081
L+ L+ +D ++ + +L+++G + V + V+ALN++ A
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGG------------- 49
Query: 1082 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1141
+ ++ D MP MDG E IR ++ +P++ +TA A +
Sbjct: 50 -------YGFVISDWNMPNMDGLELLKTIR---ADGAMSALPVLMVTAEAKKENVIAAAQ 99
Query: 1142 VGMNAYLTKP 1151
G + Y+ KP
Sbjct: 100 AGASGYVVKP 109
>pdb|3I5A|A Chain A, Crystal Structure Of Full-Length Wpsr From Pseudomonas
Syringae
Length = 334
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 1091 LILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1150
+IL D MP +DG +R+ S R+IPI+ L+ + G N YL K
Sbjct: 64 VILQDLVMPGLDGLTL---VREYRSNPLTRDIPIIVLSTKEDPLIKSAAFAAGANDYLVK 120
Query: 1151 PIDSERMVSTI 1161
D+ +V+ I
Sbjct: 121 LPDNIELVARI 131
>pdb|3RVJ|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At 59
And 89: N59d And E89q
pdb|3RVJ|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At 59
And 89: N59d And E89q
pdb|3RVK|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d E89q
Length = 132
Score = 34.3 bits (77), Expect = 0.41, Method: Composition-based stats.
Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 25/130 (19%)
Query: 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1081
L+ L+ +D ++ + +L+++G + V + V+ALN++ A
Sbjct: 9 LKFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGG------------- 53
Query: 1082 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1141
+ ++ D MP MDG E IR ++ +P++ +TA A +
Sbjct: 54 -------YGFVISDWDMPNMDGLELLKTIR---ADGAMSALPVLMVTAQAKKENIIAAAQ 103
Query: 1142 VGMNAYLTKP 1151
G + Y+ KP
Sbjct: 104 AGASGYVVKP 113
>pdb|3FFT|A Chain A, Crystal Structure Of Chey Double Mutant F14e, E89r Complexed
With Bef3- And Mn2+
pdb|3FFT|B Chain B, Crystal Structure Of Chey Double Mutant F14e, E89r Complexed
With Bef3- And Mn2+
Length = 128
Score = 34.3 bits (77), Expect = 0.42, Method: Composition-based stats.
Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 25/130 (19%)
Query: 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1081
L+ L+ +D ++ + +L+++G + V + V+ALN++ A
Sbjct: 5 LKFLVVDDESTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGG------------- 49
Query: 1082 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1141
+ ++ D MP MDG E IR ++ +P++ +TA A +
Sbjct: 50 -------YGFVISDWNMPNMDGLELLKTIR---ADGAMSALPVLMVTARAKKENIIAAAQ 99
Query: 1142 VGMNAYLTKP 1151
G + Y+ KP
Sbjct: 100 AGASGYVVKP 109
>pdb|3FGZ|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
pdb|3FGZ|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 34.3 bits (77), Expect = 0.46, Method: Composition-based stats.
Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 25/130 (19%)
Query: 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1081
L+ L+ +D ++ + +L+++G + V + V+ALN++ A
Sbjct: 5 LKFLVVDDESTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGG------------- 49
Query: 1082 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1141
+ ++ D MP MDG E IR ++ +P++ +TA A +
Sbjct: 50 -------YGFVISDWMMPNMDGLELLKTIR---ADGAMSALPVLMVTARAKKENIIAAAQ 99
Query: 1142 VGMNAYLTKP 1151
G + Y+ KP
Sbjct: 100 AGASGYVVKP 109
>pdb|3OO0|A Chain A, Structure Of Apo Chey A113p
pdb|3OO0|B Chain B, Structure Of Apo Chey A113p
pdb|3OO1|A Chain A, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
pdb|3OO1|B Chain B, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
Length = 129
Score = 34.3 bits (77), Expect = 0.48, Method: Composition-based stats.
Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 25/130 (19%)
Query: 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1081
L+ L+ +D ++ + +L+++G + V + V+ALN++ A
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGG------------- 50
Query: 1082 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1141
+ ++ D MP MDG E IR ++ +P++ +TA A +
Sbjct: 51 -------YGFVISDWNMPNMDGLELLKTIR---ADGAMSALPVLMVTAEAKKENIIAAAQ 100
Query: 1142 VGMNAYLTKP 1151
G + Y+ KP
Sbjct: 101 AGASGYVVKP 110
>pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1EAY|B Chain B, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1A0O|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|E Chain E, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|G Chain G, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1BDJ|A Chain A, Complex Structure Of Hpt Domain And Chey
pdb|1F4V|A Chain A, Crystal Structure Of Activated Chey Bound To The N-Terminus
Of Flim
pdb|1F4V|B Chain B, Crystal Structure Of Activated Chey Bound To The N-Terminus
Of Flim
pdb|1F4V|C Chain C, Crystal Structure Of Activated Chey Bound To The N-Terminus
Of Flim
pdb|1FFG|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFG|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFS|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFS|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFW|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FFW|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FQW|A Chain A, Crystal Structure Of Activated Chey
pdb|1FQW|B Chain B, Crystal Structure Of Activated Chey
pdb|2B1J|A Chain A, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|2B1J|B Chain B, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|1CHN|A Chain A, Magnesium Binding To The Bacterial Chemotaxis Protein Chey
Results In Large Conformational Changes Involving Its
Functional Surface
pdb|3CHY|A Chain A, Crystal Structure Of Escherichia Coli Chey Refined At 1.7-
Angstrom Resolution
pdb|2LP4|Y Chain Y, Solution Structure Of P1-CheyP2 COMPLEX IN BACTERIAL
CHEMOTAXIS
Length = 128
Score = 34.3 bits (77), Expect = 0.48, Method: Composition-based stats.
Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 25/130 (19%)
Query: 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1081
L+ L+ +D ++ + +L+++G + V + V+ALN++ A
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGG------------- 49
Query: 1082 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1141
+ ++ D MP MDG E IR ++ +P++ +TA A +
Sbjct: 50 -------YGFVISDWNMPNMDGLELLKTIR---ADGAMSALPVLMVTAEAKKENIIAAAQ 99
Query: 1142 VGMNAYLTKP 1151
G + Y+ KP
Sbjct: 100 AGASGYVVKP 109
>pdb|3MYY|A Chain A, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
pdb|3MYY|B Chain B, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
Length = 128
Score = 34.3 bits (77), Expect = 0.48, Method: Composition-based stats.
Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 25/130 (19%)
Query: 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1081
L+ L+ +D ++ + +L+++G + V + V+ALN++ A
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGG------------- 49
Query: 1082 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1141
+ ++ D MP MDG E IR ++ +P++ +TA A +
Sbjct: 50 -------YGFVISDWNMPNMDGLELLKTIR---ADGAMSALPVLMVTAEAKKENIIAAAQ 99
Query: 1142 VGMNAYLTKP 1151
G + Y+ KP
Sbjct: 100 AGASGYVVKP 109
>pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From Escherichia
Coli
pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
Length = 129
Score = 34.3 bits (77), Expect = 0.48, Method: Composition-based stats.
Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 25/130 (19%)
Query: 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1081
L+ L+ +D ++ + +L+++G + V + V+ALN++ A
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGG------------- 50
Query: 1082 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1141
+ ++ D MP MDG E IR ++ +P++ +TA A +
Sbjct: 51 -------YGFVISDWNMPNMDGLELLKTIR---ADGAMSALPVLMVTAEAKKENIIAAAQ 100
Query: 1142 VGMNAYLTKP 1151
G + Y+ KP
Sbjct: 101 AGASGYVVKP 110
>pdb|1CEY|A Chain A, Assignments, Secondary Structure, Global Fold, And Dynamics
Of Chemotaxis Y Protein Using Three-And Four-Dimensional
Heteronuclear (13c,15n) Nmr Spectroscopy
Length = 128
Score = 33.9 bits (76), Expect = 0.48, Method: Composition-based stats.
Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 25/130 (19%)
Query: 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1081
L+ L+ +D ++ + +L+++G + V + V+ALN++ A
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGG------------- 49
Query: 1082 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1141
+ ++ D MP MDG E IR ++ +P++ +TA A +
Sbjct: 50 -------YGFVISDWNMPNMDGLELLKTIR---ADGAMSALPVLMVTAEAKKENIIAAAQ 99
Query: 1142 VGMNAYLTKP 1151
G + Y+ KP
Sbjct: 100 AGASGYVVKP 109
>pdb|3CNB|A Chain A, Crystal Structure Of Signal Receiver Domain Of Dna Binding
Response Regulator Protein (Merr) From Colwellia
Psychrerythraea 34h
pdb|3CNB|B Chain B, Crystal Structure Of Signal Receiver Domain Of Dna Binding
Response Regulator Protein (Merr) From Colwellia
Psychrerythraea 34h
pdb|3CNB|C Chain C, Crystal Structure Of Signal Receiver Domain Of Dna Binding
Response Regulator Protein (Merr) From Colwellia
Psychrerythraea 34h
Length = 143
Score = 33.9 bits (76), Expect = 0.49, Method: Composition-based stats.
Identities = 19/89 (21%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 1086 TPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMN 1145
T + D++++D M MDG+ I+ + + NI ++A+T + + + + +G
Sbjct: 52 TVKPDVVMLDLMMVGMDGFSICHRIKSTPA---TANIIVIAMTGALTDDNVSRIVALGAE 108
Query: 1146 AYLTKPIDSERMVSTILRLTKNMPSEATG 1174
KP++ + TI +L + + + G
Sbjct: 109 TCFGKPLNFTLLEKTIKQLVEQKKATSEG 137
>pdb|3RVL|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At 59
And 89: N59d And E89r
pdb|3RVL|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At 59
And 89: N59d And E89r
pdb|3RVM|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d And E89r
pdb|3RVR|A Chain A, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVR|B Chain B, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVS|A Chain A, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
pdb|3RVS|B Chain B, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
Length = 132
Score = 33.9 bits (76), Expect = 0.50, Method: Composition-based stats.
Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 25/130 (19%)
Query: 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1081
L+ L+ +D ++ + +L+++G + V + V+ALN++ A
Sbjct: 9 LKFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGG------------- 53
Query: 1082 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1141
+ ++ D MP MDG E IR ++ +P++ +TA A +
Sbjct: 54 -------YGFVISDWDMPNMDGLELLKTIR---ADGAMSALPVLMVTARAKKENIIAAAQ 103
Query: 1142 VGMNAYLTKP 1151
G + Y+ KP
Sbjct: 104 AGASGYVVKP 113
>pdb|3B2N|A Chain A, Crystal Structure Of Dna-binding Response Regulator, Luxr
Family, From Staphylococcus Aureus
Length = 133
Score = 33.9 bits (76), Expect = 0.55, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 1090 DLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149
+++++D +MP M G E EIRK NI ++ +T +K + ++AY+
Sbjct: 51 NVVILDIEMPGMTGLEVLAEIRKKH-----LNIKVIIVTTFKRPGYFEKAVVNDVDAYVL 105
Query: 1150 KPIDSERMVSTI 1161
K E +V TI
Sbjct: 106 KERSIEELVETI 117
>pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t
pdb|1AB6|B Chain B, Structure Of Chey Mutant F14n, V86t
Length = 125
Score = 33.9 bits (76), Expect = 0.56, Method: Composition-based stats.
Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 25/130 (19%)
Query: 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1081
L+ L+ +D ++ + +L+++G + V + V+ALN++ A
Sbjct: 2 LKFLVVDDNSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGG------------- 46
Query: 1082 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1141
+ ++ D MP MDG E IR ++ +P++ TA A +
Sbjct: 47 -------YGFVISDWNMPNMDGLELLKTIR---ADGAMSALPVLMTTAEAKKENIIAAAQ 96
Query: 1142 VGMNAYLTKP 1151
G + Y+ KP
Sbjct: 97 AGASGYVVKP 106
>pdb|1P2F|A Chain A, Crystal Structure Analysis Of Response Regulator Drrb, A
Thermotoga Maritima OmprPHOB HOMOLOG
Length = 220
Score = 33.9 bits (76), Expect = 0.57, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 54/117 (46%), Gaps = 7/117 (5%)
Query: 1048 VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEAT 1107
++VV D ++ ++ L + R ++ L G D F ++++D +P GYE
Sbjct: 5 IAVVDDDKNILKKVSEKLQ-QLGRVKTFLTGE-DFLNDEEAFHVVVLDVXLPDYSGYEIC 62
Query: 1108 IEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL 1164
I+++ E ++ LT + + K G + Y+TKP + E +++ + R
Sbjct: 63 RXIKETRPETW-----VILLTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRF 114
>pdb|3RVP|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At 59
And 89: N59d And E89k
pdb|3RVP|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At 59
And 89: N59d And E89k
pdb|3RVQ|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d E89k
Length = 132
Score = 33.9 bits (76), Expect = 0.57, Method: Composition-based stats.
Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 25/130 (19%)
Query: 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1081
L+ L+ +D ++ + +L+++G + V + V+ALN++ A
Sbjct: 9 LKFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGG------------- 53
Query: 1082 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1141
+ ++ D MP MDG E IR ++ +P++ +TA A +
Sbjct: 54 -------YGFVISDWDMPNMDGLELLKTIR---ADGAMSALPVLMVTAKAKKENIIAAAQ 103
Query: 1142 VGMNAYLTKP 1151
G + Y+ KP
Sbjct: 104 AGASGYVVKP 113
>pdb|1CYE|A Chain A, Three Dimensional Structure Of Chemotactic Che Y Protein In
Aqueous Solution By Nuclear Magnetic Resonance Methods
Length = 129
Score = 33.9 bits (76), Expect = 0.58, Method: Composition-based stats.
Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 25/130 (19%)
Query: 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1081
L+ L+ +D ++ + +L+++G + V + V+ALN++ A
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGG------------- 50
Query: 1082 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1141
+ ++ D MP MDG E IR ++ +P++ +TA A +
Sbjct: 51 -------YGFVISDWNMPNMDGLELLKTIR---ADGAMSALPVLMVTAEAKKENIIAAAQ 100
Query: 1142 VGMNAYLTKP 1151
G + Y+ KP
Sbjct: 101 AGASGYVVKP 110
>pdb|3NNS|A Chain A, Bef3 Activated Drrb Receiver Domain
pdb|3NNS|B Chain B, Bef3 Activated Drrb Receiver Domain
Length = 117
Score = 33.5 bits (75), Expect = 0.63, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 1085 DTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGM 1144
D F ++++D +P GYE I+++ E ++ LT + + K G
Sbjct: 40 DEEAFHVVVLDVXLPDYSGYEICRXIKETRPETW-----VILLTLLSDDESVLKGFEAGA 94
Query: 1145 NAYLTKPIDSERMVSTILRL 1164
+ Y+TKP + E +++ + R
Sbjct: 95 DDYVTKPFNPEILLARVKRF 114
>pdb|3A0U|A Chain A, Crystal Structure Of Response Regulator Protein Trra
(Tm1360) From Thermotoga Maritima In Complex With Mg(2+)-
Bef (Wild Type)
Length = 116
Score = 33.5 bits (75), Expect = 0.68, Method: Composition-based stats.
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 28/109 (25%)
Query: 1023 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1082
RIL+ +D P I+ + + L++ G + +G EAL + +
Sbjct: 3 RILVVDDEPNIRELLKEELQEEGYEIDTAENG---EEALKKFFSGN-------------- 45
Query: 1083 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHA 1131
+DL+++D +MP + G E EIRK + ++ I+ LTA++
Sbjct: 46 ------YDLVILDIEMPGISGLEVAGEIRKKK-----KDAKIILLTAYS 83
>pdb|1JBE|A Chain A, 1.08 A Structure Of Apo-Chey Reveals Meta-Active
Conformation
Length = 128
Score = 33.5 bits (75), Expect = 0.77, Method: Composition-based stats.
Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 25/130 (19%)
Query: 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1081
L+ L+ +D ++ + +L+++G + V + V+ALN++ A
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGG------------- 49
Query: 1082 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1141
+ ++ D MP MDG E IR + +P++ +TA A +
Sbjct: 50 -------YGFVISDWNMPNMDGLELLKTIRAXXAMSA---LPVLMVTAEAKKENIIAAAQ 99
Query: 1142 VGMNAYLTKP 1151
G + Y+ KP
Sbjct: 100 AGASGYVVKP 109
>pdb|2JVI|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant H101a From Bacillus Subtilis
Length = 132
Score = 33.5 bits (75), Expect = 0.79, Method: Composition-based stats.
Identities = 34/149 (22%), Positives = 63/149 (42%), Gaps = 31/149 (20%)
Query: 1023 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1082
+IL+ +D I+I+ ++ K G +GLQA++ + + E
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTK------------------E 46
Query: 1083 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1142
PD L+L+D ++P MDG E ++ + NI ++ +TA+ ++ +
Sbjct: 47 RPD-----LVLLDMKIPGMDGIEILKRMKVID-----ENIRVIIMTAYGELDMIQESKEL 96
Query: 1143 GMNAYLTKPIDSERM---VSTILRLTKNM 1168
G KP D + + V L L N+
Sbjct: 97 GALTAFAKPFDIDEIRDAVKKYLPLKSNL 125
>pdb|3BRE|A Chain A, Crystal Structure Of P.Aeruginosa Pa3702
pdb|3BRE|B Chain B, Crystal Structure Of P.Aeruginosa Pa3702
Length = 358
Score = 33.5 bits (75), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 1091 LILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1150
+IL D MP +DG R + + R+IPI+ L+ + G N YL K
Sbjct: 66 VILQDLVMPGVDGLTLLAAYRGNPA---TRDIPIIVLSTKEEPTVKSAAFAAGANDYLVK 122
Query: 1151 PIDSERMVSTI 1161
D+ +V+ I
Sbjct: 123 LPDAIELVARI 133
>pdb|3F7N|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
pdb|3F7N|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
Length = 128
Score = 33.1 bits (74), Expect = 0.88, Method: Composition-based stats.
Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 25/130 (19%)
Query: 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1081
L+ L+ +D ++ + +L+++G + V + V+ALN++ A
Sbjct: 5 LKFLVVDDESTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGG------------- 49
Query: 1082 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1141
+ ++ D MP MDG E IR ++ +P++ +TA A +
Sbjct: 50 -------YGFVISDWMMPNMDGLELLKTIR---ADGAMSALPVLMVTALAKKENIIAAAQ 99
Query: 1142 VGMNAYLTKP 1151
G + Y+ KP
Sbjct: 100 AGASGYVVKP 109
>pdb|3CGY|A Chain A, Crystal Structure Of Salmonella Sensor Kinase Phoq
Catalytic Domain In Complex With Radicicol
pdb|3CGY|B Chain B, Crystal Structure Of Salmonella Sensor Kinase Phoq
Catalytic Domain In Complex With Radicicol
pdb|3CGY|C Chain C, Crystal Structure Of Salmonella Sensor Kinase Phoq
Catalytic Domain In Complex With Radicicol
pdb|3CGZ|A Chain A, Crystal Structure Of Salmonella Sensor Kinase Phoq
Catalytic Domain
pdb|3CGZ|B Chain B, Crystal Structure Of Salmonella Sensor Kinase Phoq
Catalytic Domain
pdb|3CGZ|C Chain C, Crystal Structure Of Salmonella Sensor Kinase Phoq
Catalytic Domain
Length = 157
Score = 33.1 bits (74), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 687 VDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEI 738
V+D G GI SK VF+ ++ D T R G G+GL++ R + + G+I
Sbjct: 84 VEDDGPGIPHSKRSLVFDRGQRAD--TLRP--GQGVGLAVAREITEQYAGQI 131
>pdb|3LTE|A Chain A, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|B Chain B, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|C Chain C, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|D Chain D, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|E Chain E, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|F Chain F, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|G Chain G, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|H Chain H, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|I Chain I, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|J Chain J, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|K Chain K, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|L Chain L, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|M Chain M, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|N Chain N, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|O Chain O, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|P Chain P, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|Q Chain Q, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|R Chain R, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|S Chain S, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|T Chain T, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|U Chain U, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|V Chain V, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|W Chain W, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|X Chain X, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
Length = 132
Score = 33.1 bits (74), Expect = 0.99, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 1091 LILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1150
++ +D MPK+DG + +R+++ N P + + + A ++ + G + YL K
Sbjct: 53 IMTLDLSMPKLDGLDVIRSLRQNK----VANQPKILVVSGLDKAKLQQAVTEGADDYLEK 108
Query: 1151 PIDSERMVSTI 1161
P D++ ++ I
Sbjct: 109 PFDNDALLDRI 119
>pdb|3R0J|A Chain A, Structure Of Phop From Mycobacterium Tuberculosis
pdb|3R0J|B Chain B, Structure Of Phop From Mycobacterium Tuberculosis
Length = 250
Score = 33.1 bits (74), Expect = 1.0, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 6/117 (5%)
Query: 1046 ATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS-ETPDTPRFDLILMDCQMPKMDGY 1104
A V VV D VE L+ L + + G+ + + R D +++D P DG+
Sbjct: 24 ARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVXXPGXDGF 83
Query: 1105 EATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTI 1161
+R + P + LTA D+ L +G + Y+TKP E +V+ +
Sbjct: 84 GVLRRLRAD-----GIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARL 135
>pdb|1E6K|A Chain A, Two-Component Signal Transduction System D12a Mutant Of Chey
Length = 130
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 25/130 (19%)
Query: 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1081
L+ L+ D ++ + +L+++G + V + V+ALN++ A
Sbjct: 7 LKFLVVADFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGG------------- 51
Query: 1082 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1141
+ ++ D MP MDG E IR ++ +P++ +TA A +
Sbjct: 52 -------YGFVISDWNMPNMDGLELLKTIR---ADGAMSALPVLMVTAEAKKENIIAAAQ 101
Query: 1142 VGMNAYLTKP 1151
G + Y+ KP
Sbjct: 102 AGASGYVVKP 111
>pdb|3OLX|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
pdb|3OLX|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
Length = 129
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 27/130 (20%), Positives = 55/130 (42%), Gaps = 25/130 (19%)
Query: 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1081
L+ L+ +D ++ + +L+++G + V + V+ALN++ A
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGG------------- 50
Query: 1082 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1141
+ ++ D MP MDG E IR ++ +P++ +T+ A +
Sbjct: 51 -------YGFVISDWNMPNMDGLELLKTIR---ADGAMSALPVLMVTSEAKKENIIAAAQ 100
Query: 1142 VGMNAYLTKP 1151
G + Y+ KP
Sbjct: 101 AGASGYVVKP 110
>pdb|3E78|A Chain A, Structure Determination Of The Cancer-Associated
Mycoplasma Hyorhinis Protein Mh-P37
pdb|3E79|A Chain A, Structure Determination Of The Cancer-Associated
Mycoplasma Hyorhinis Protein Mh-P37
pdb|3EKI|A Chain A, Structural Insights Of The Mycoplasma Hyorhinis Protein
Mh-P37: A Putative Thiamine Pyrophosphate Transporter
Length = 403
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 870 EQLNSLDIFH----RKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPL 913
+ L +LD FH + FAW N T P +T+ + + + ++VT P+
Sbjct: 294 DTLGTLDDFHIAFSEEGSFAWTHNKSATKPFETKANEKMEALIVTNPI 341
>pdb|2FTK|E Chain E, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|F Chain F, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|G Chain G, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|H Chain H, Berylloflouride Spo0f Complex With Spo0b
Length = 124
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 58/135 (42%), Gaps = 28/135 (20%)
Query: 1023 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1082
+IL+ +D I+I+ ++ K G +GLQA++ + + E
Sbjct: 5 KILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTK------------------E 46
Query: 1083 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1142
PD L+L+ ++P MDG E ++ + NI ++ +TA+ ++ +
Sbjct: 47 RPD-----LVLLXMKIPGMDGIEILKRMKVID-----ENIRVIIMTAYGELDMIQESKEL 96
Query: 1143 GMNAYLTKPIDSERM 1157
G + KP D + +
Sbjct: 97 GALTHFAKPFDIDEI 111
>pdb|3OLV|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
pdb|3OLV|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
Length = 129
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 27/130 (20%), Positives = 54/130 (41%), Gaps = 25/130 (19%)
Query: 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1081
L+ L+ +D ++ + +L+++G + V + V+ALN++ A
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGG------------- 50
Query: 1082 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1141
+ ++ D MP MDG E IR ++ +P++ +T A +
Sbjct: 51 -------YGFVISDWNMPNMDGLELLKTIR---ADGAMSALPVLMVTVEAKKENIIAAAQ 100
Query: 1142 VGMNAYLTKP 1151
G + Y+ KP
Sbjct: 101 AGASGYVVKP 110
>pdb|2PKX|A Chain A, E.Coli Response Regulator Phop Receiver Domain
pdb|2PKX|B Chain B, E.Coli Response Regulator Phop Receiver Domain
pdb|2PL1|A Chain A, Berrylium Fluoride Activated Receiver Domain Of E.Coli Phop
Length = 121
Score = 32.3 bits (72), Expect = 1.6, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 1090 DLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149
D+ ++D +P DG R ++ ++PI+ LTA D+ + L G + Y+T
Sbjct: 46 DIAIVDLGLPDEDGLSLIRRWRSNDV-----SLPILVLTARESWQDKVEVLSAGADDYVT 100
Query: 1150 KPIDSERMVS 1159
KP E + +
Sbjct: 101 KPFHIEEVXA 110
>pdb|3OLW|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
pdb|3OLW|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
Length = 129
Score = 32.3 bits (72), Expect = 1.7, Method: Composition-based stats.
Identities = 27/130 (20%), Positives = 54/130 (41%), Gaps = 25/130 (19%)
Query: 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1081
L+ L+ +D ++ + +L+++G + V + V+ALN++ A
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGG------------- 50
Query: 1082 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1141
+ ++ D MP MDG E IR ++ +P++ +T A +
Sbjct: 51 -------YGFVISDWNMPNMDGLELLKTIR---ADGAMSALPVLMVTTEAKKENIIAAAQ 100
Query: 1142 VGMNAYLTKP 1151
G + Y+ KP
Sbjct: 101 AGASGYVVKP 110
>pdb|1HEY|A Chain A, Investigating The Structural Determinants Of The P21-Like
Triphosphate And Mg2+ Binding Site
Length = 128
Score = 32.3 bits (72), Expect = 1.7, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 1089 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1148
+ ++ D MP MDG E IR ++ +P++ +TA A + G + Y+
Sbjct: 50 YGFVISDWNMPNMDGLELLKTIR---ADGAMSALPVLMVTAEAKKENIIAAAQAGASGYV 106
Query: 1149 TKP 1151
KP
Sbjct: 107 VKP 109
>pdb|5CHY|A Chain A, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 32.3 bits (72), Expect = 1.7, Method: Composition-based stats.
Identities = 27/130 (20%), Positives = 55/130 (42%), Gaps = 25/130 (19%)
Query: 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1081
L+ L+ +D ++ + +L+++G + V + V+ALN++ A
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGG------------- 49
Query: 1082 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1141
+ ++ D MP MDG E IR ++ +P++ +TA A +
Sbjct: 50 -------YGFVISDWNMPNMDGLELLKTIR---ADGAMSALPVLMVTAEAKKENIIAAAQ 99
Query: 1142 VGMNAYLTKP 1151
G + ++ KP
Sbjct: 100 AGASGWVVKP 109
>pdb|1YMV|A Chain A, Signal Transduction Protein Chey Mutant With Phe 14 Replaced
By Gly, Ser 15 Replaced By Gly, And Met 17 Replaced By
Gly
Length = 129
Score = 32.3 bits (72), Expect = 1.7, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 1089 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1148
+ ++ D MP MDG E IR ++ +P++ +TA A + G + Y+
Sbjct: 51 YGFVISDWNMPNMDGLELLKTIR---ADGAMSALPVLMVTAEAKKENIIAAAQAGASGYV 107
Query: 1149 TKP 1151
KP
Sbjct: 108 VKP 110
>pdb|1E6L|A Chain A, Two-Component Signal Transduction System D13a Mutant Of Chey
Length = 127
Score = 32.3 bits (72), Expect = 1.8, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 1089 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1148
+ ++ D MP MDG E IR ++ +P++ +TA A + G + Y+
Sbjct: 49 YGFVISDWNMPNMDGLELLKTIR---ADGAMSALPVLMVTAEAKKENIIAAAQAGASGYV 105
Query: 1149 TKP 1151
KP
Sbjct: 106 VKP 108
>pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17 Replaced
By Gly (M17g)
pdb|1YMU|B Chain B, Signal Transduction Protein Chey Mutant With Met 17 Replaced
By Gly (M17g)
Length = 130
Score = 32.0 bits (71), Expect = 1.9, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 1089 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1148
+ ++ D MP MDG E IR ++ +P++ +TA A + G + Y+
Sbjct: 52 YGFVISDWNMPNMDGLELLKTIR---ADGAMSALPVLMVTAEAKKENIIAAAQAGASGYV 108
Query: 1149 TKP 1151
KP
Sbjct: 109 VKP 111
>pdb|1EHC|A Chain A, Structure Of Signal Transduction Protein Chey
Length = 128
Score = 32.0 bits (71), Expect = 1.9, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 1089 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1148
+ ++ D MP MDG E IR ++ +P++ +TA A + G + Y+
Sbjct: 50 YGFVISDWNMPNMDGLELLKTIR---ADGAMSALPVLMVTAEAKKENIIAAAQAGASGYV 106
Query: 1149 TKP 1151
KP
Sbjct: 107 VKP 109
>pdb|3OLY|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
pdb|3OLY|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
Length = 129
Score = 32.0 bits (71), Expect = 1.9, Method: Composition-based stats.
Identities = 27/130 (20%), Positives = 54/130 (41%), Gaps = 25/130 (19%)
Query: 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1081
L+ L+ +D ++ + +L+++G + V + V+ALN++ A
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGG------------- 50
Query: 1082 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1141
+ ++ D MP MDG E IR ++ +P++ +T A +
Sbjct: 51 -------YGFVISDWNMPNMDGLELLKTIR---ADGAMSALPVLMVTMEAKKENIIAAAQ 100
Query: 1142 VGMNAYLTKP 1151
G + Y+ KP
Sbjct: 101 AGASGYVVKP 110
>pdb|1VLZ|A Chain A, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
pdb|1VLZ|B Chain B, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
Length = 128
Score = 32.0 bits (71), Expect = 2.0, Method: Composition-based stats.
Identities = 27/130 (20%), Positives = 54/130 (41%), Gaps = 25/130 (19%)
Query: 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1081
L+ L+ +D ++ + +L+++G + V + V+ALN++ A
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGG------------- 49
Query: 1082 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1141
+ ++ D MP MDG E IR ++ +P++ + A A +
Sbjct: 50 -------YGFVISDWNMPNMDGLELLKTIR---ADGAMSALPVLMVIAEAKKENIIAAAQ 99
Query: 1142 VGMNAYLTKP 1151
G + Y+ KP
Sbjct: 100 AGASGYVVKP 109
>pdb|3JTE|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein From Clostridium Thermocellum
Length = 143
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 1062 NRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARN 1121
N +L A SS +G T + D+++ D +MPK+ G + EI+K + H A
Sbjct: 28 NEVLTASSST-----EGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKI-TPHMA-- 79
Query: 1122 IPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERM 1157
++ LT H + + G YL KP+ ++ +
Sbjct: 80 --VIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDL 113
>pdb|3EUL|A Chain A, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|B Chain B, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|C Chain C, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|D Chain D, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
Length = 152
Score = 32.0 bits (71), Expect = 2.4, Method: Composition-based stats.
Identities = 34/151 (22%), Positives = 58/151 (38%), Gaps = 34/151 (22%)
Query: 1020 EGLRILLAEDTPLIQIVACKILEKVGAT--VSVVPDGLQAVEALNRMLAAESSRRRSLLQ 1077
E +R+++ +D PL + + L G+ V DG A+E + L
Sbjct: 14 EKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLP----------- 62
Query: 1078 GSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP--IVALTAHAMNAD 1135
D+ L+D +MP MDG + +R E +P ++ ++AH A
Sbjct: 63 ------------DVALLDYRMPGMDGAQVAAAVRSYE-------LPTRVLLISAHDEPAI 103
Query: 1136 EKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1166
+ L G +L K +V +L K
Sbjct: 104 VYQALQQGAAGFLLKDSTRTEIVKAVLDCAK 134
>pdb|1XHE|A Chain A, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
pdb|1XHE|B Chain B, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
Length = 123
Score = 31.2 bits (69), Expect = 3.2, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 1090 DLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149
+L++MD +P +G E+R+ N+ ++ LT D+ L +G + Y+T
Sbjct: 49 NLVIMDINLPGKNGLLLARELREQA------NVALMFLTGRDNEVDKILGLEIGADDYIT 102
Query: 1150 KPIDSERM 1157
KP + +
Sbjct: 103 KPFNPREL 110
>pdb|1YIO|A Chain A, Crystallographic Structure Of Response Regulator Styr From
Pseudomonas Fluorescens
pdb|1ZN2|A Chain A, Low Resolution Structure Of Response Regulator Styr
Length = 208
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 6/116 (5%)
Query: 1047 TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTP-RFDLILMDCQMPKMDGYE 1105
TV VV D + E L +L + + S P + +++D +MP M G E
Sbjct: 6 TVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPEQHGCLVLDMRMPGMSGIE 65
Query: 1106 ATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTI 1161
++ + IPIV +TAH + + G +L KP + + ++ I
Sbjct: 66 LQEQLTAI-----SDGIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAI 116
>pdb|1ZDM|A Chain A, Crystal Structure Of Activated Chey Bound To Xe
pdb|1ZDM|B Chain B, Crystal Structure Of Activated Chey Bound To Xe
Length = 129
Score = 31.2 bits (69), Expect = 3.6, Method: Composition-based stats.
Identities = 27/130 (20%), Positives = 54/130 (41%), Gaps = 25/130 (19%)
Query: 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1081
L+ L+ +D ++ + +L+++G + V + V+ALN++ A
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGG------------- 50
Query: 1082 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1141
+ ++ MP MDG E IR ++ +P++ +TA A +
Sbjct: 51 -------YGFVISXWNMPNMDGLELLKTIR---ADGAMSALPVLMVTAEAKKENIIAAAQ 100
Query: 1142 VGMNAYLTKP 1151
G + Y+ KP
Sbjct: 101 AGASGYVVKP 110
>pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Modified Chey D57c
Length = 128
Score = 31.2 bits (69), Expect = 3.6, Method: Composition-based stats.
Identities = 27/130 (20%), Positives = 54/130 (41%), Gaps = 25/130 (19%)
Query: 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1081
L+ L+ +D ++ + +L+++G + V + V+ALN++ A
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGG------------- 49
Query: 1082 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1141
+ ++ MP MDG E IR ++ +P++ +TA A +
Sbjct: 50 -------YGFVISXWNMPNMDGLELLKTIR---ADGAMSALPVLMVTAEAKKENIIAAAQ 99
Query: 1142 VGMNAYLTKP 1151
G + Y+ KP
Sbjct: 100 AGASGYVVKP 109
>pdb|3HDG|A Chain A, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
pdb|3HDG|B Chain B, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
pdb|3HDG|D Chain D, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
pdb|3HDG|E Chain E, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
Length = 137
Score = 31.2 bits (69), Expect = 3.7, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 10/124 (8%)
Query: 1041 LEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETP---DTPRFDLILMDCQ 1097
L +V + +V D A E L+ +++ S G E P D+I+ D +
Sbjct: 3 LREVALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLHAP--DVIITDIR 60
Query: 1098 MPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERM 1157
PK+ G E I+ G ++ ++A + K + +G++ +L KPI+ R+
Sbjct: 61 XPKLGGLEXLDRIKA-----GGAKPYVIVISAFSEXKYFIKAIELGVHLFLPKPIEPGRL 115
Query: 1158 VSTI 1161
T+
Sbjct: 116 XETL 119
>pdb|1ID0|A Chain A, Crystal Structure Of The Nucleotide Bond Conformation Of
Phoq Kinase Domain
Length = 152
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 687 VDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSP 746
V+D G GI SK E +F+ ++ D T R G G+GL++ R + + G+I +
Sbjct: 79 VEDDGPGIPLSKREVIFDRGQRVD--TLRP--GQGVGLAVAREITEQYEGKIVAGESMLG 134
Query: 747 GTLMQL 752
G M++
Sbjct: 135 GARMEV 140
>pdb|3A0R|B Chain B, Crystal Structure Of Histidine Kinase Thka (Tm1359) In
Complex With Response Regulator Protein Trra (Tm1360)
pdb|3A10|A Chain A, Crystal Structure Of Response Regulator Protein Trra
(Tm1360) From Thermotoga Maritima In Complex With Mg(2+)-
Bef (Semet, L89m)
Length = 116
Score = 30.8 bits (68), Expect = 4.6, Method: Composition-based stats.
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 28/109 (25%)
Query: 1023 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1082
RIL+ +D P I+ + + L++ G + +G EAL + +
Sbjct: 3 RILVVDDEPNIRELLKEELQEEGYEIDTAENG---EEALKKFFSGN-------------- 45
Query: 1083 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHA 1131
+DL+++D + P + G E EIRK + ++ I+ LTA++
Sbjct: 46 ------YDLVILDIEXPGISGLEVAGEIRKKK-----KDAKIILLTAYS 83
>pdb|1E6M|A Chain A, Two-Component Signal Transduction System D57a Mutant Of Chey
Length = 128
Score = 30.8 bits (68), Expect = 5.0, Method: Composition-based stats.
Identities = 27/130 (20%), Positives = 54/130 (41%), Gaps = 25/130 (19%)
Query: 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1081
L+ L+ +D ++ + +L+++G + V + V+ALN++ A
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGG------------- 49
Query: 1082 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1141
+ ++ MP MDG E IR ++ +P++ +TA A +
Sbjct: 50 -------YGFVISAWNMPNMDGLELLKTIR---ADGAMSALPVLMVTAEAKKENIIAAAQ 99
Query: 1142 VGMNAYLTKP 1151
G + Y+ KP
Sbjct: 100 AGASGYVVKP 109
>pdb|4E7O|A Chain A, Crystal Structure Of Receiver Domain Of Putative Narl Family
Response Regulator Spr1814 From Streptococcus Pneumoniae
pdb|4E7O|B Chain B, Crystal Structure Of Receiver Domain Of Putative Narl Family
Response Regulator Spr1814 From Streptococcus Pneumoniae
pdb|4E7P|A Chain A, Crystal Structure Of Receiver Domain Of Putative Narl Family
Response Regulator Spr1814 From Streptococcus Pneumoniae
In The Presence Of The Phosphoryl Analog Beryllofluoride
pdb|4E7P|B Chain B, Crystal Structure Of Receiver Domain Of Putative Narl Family
Response Regulator Spr1814 From Streptococcus Pneumoniae
In The Presence Of The Phosphoryl Analog Beryllofluoride
Length = 150
Score = 30.8 bits (68), Expect = 5.2, Method: Composition-based stats.
Identities = 29/142 (20%), Positives = 63/142 (44%), Gaps = 30/142 (21%)
Query: 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1081
+++L+AED +++ C++L ++ PD ++A N A + + S+
Sbjct: 21 MKVLVAEDQSMLRDAMCQLL-------TLQPDVESVLQAKNGQEAIQLLEKESV------ 67
Query: 1082 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1141
D+ ++D +MP G E IR + E +V +T ++ +
Sbjct: 68 --------DIAILDVEMPVKTGLEVLEWIRSEKLE-----TKVVVVTTFKRAGYFERAVK 114
Query: 1142 VGMNAYLTKPIDSERMVSTILR 1163
G++AY+ K ER ++ +++
Sbjct: 115 AGVDAYVLK----ERSIADLMQ 132
>pdb|6CHY|A Chain A, Structure Of Chemotaxis Protein Chey
pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 30.0 bits (66), Expect = 7.3, Method: Composition-based stats.
Identities = 26/130 (20%), Positives = 54/130 (41%), Gaps = 25/130 (19%)
Query: 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1081
L+ L+ +D ++ + +L+++G + V + V+ALN++ A
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGG------------- 49
Query: 1082 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1141
+ ++ D MP MDG E IR ++ +P++ + A A +
Sbjct: 50 -------YGFVISDWNMPNMDGLELLKTIR---ADGAMSALPVLMVIAEAKKENIIAAAQ 99
Query: 1142 VGMNAYLTKP 1151
G + ++ KP
Sbjct: 100 AGASGWVVKP 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,049,105
Number of Sequences: 62578
Number of extensions: 1207348
Number of successful extensions: 3091
Number of sequences better than 100.0: 151
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 115
Number of HSP's that attempted gapping in prelim test: 2900
Number of HSP's gapped (non-prelim): 205
length of query: 1177
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1067
effective length of database: 8,089,757
effective search space: 8631770719
effective search space used: 8631770719
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)