Query 001044
Match_columns 1177
No_of_seqs 696 out of 5500
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 14:15:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001044.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001044hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10841 hybrid sensory kinase 100.0 3.8E-58 8.3E-63 592.0 74.6 483 486-1168 438-920 (924)
2 PRK11107 hybrid sensory histid 100.0 1.5E-57 3.2E-62 592.6 76.5 503 486-1169 284-789 (919)
3 PRK15347 two component system 100.0 3.1E-56 6.7E-61 580.5 67.2 424 485-1166 388-811 (921)
4 TIGR02956 TMAO_torS TMAO reduc 100.0 8.6E-53 1.9E-57 551.0 55.6 369 486-1167 455-823 (968)
5 PRK11091 aerobic respiration c 100.0 5.4E-52 1.2E-56 531.5 47.8 369 488-1168 276-646 (779)
6 PRK11466 hybrid sensory histid 100.0 7.5E-51 1.6E-55 529.7 56.0 364 487-1168 436-801 (914)
7 PRK09959 hybrid sensory histid 100.0 6.6E-47 1.4E-51 505.6 49.3 374 485-1166 702-1075(1197)
8 KOG0519 Sensory transduction h 100.0 1.9E-47 4E-52 481.0 14.2 579 468-1166 192-785 (786)
9 PRK10618 phosphotransfer inter 100.0 1.8E-43 4E-48 450.2 46.2 234 485-757 440-673 (894)
10 PRK13837 two-component VirA-li 100.0 5.7E-42 1.2E-46 440.7 53.3 367 493-1168 448-815 (828)
11 COG5002 VicK Signal transducti 100.0 1.1E-40 2.4E-45 361.4 19.3 224 494-758 224-450 (459)
12 PRK13557 histidine kinase; Pro 100.0 1.5E-35 3.2E-40 362.5 47.2 369 495-1169 163-537 (540)
13 COG2205 KdpD Osmosensitive K+ 100.0 6.3E-37 1.4E-41 364.7 33.6 226 488-758 653-881 (890)
14 PRK09303 adaptive-response sen 100.0 6.6E-35 1.4E-39 343.5 32.1 233 483-757 139-378 (380)
15 PRK11006 phoR phosphate regulo 100.0 1.5E-32 3.2E-37 328.6 29.5 221 494-757 203-424 (430)
16 PRK10604 sensor protein RstB; 100.0 9.1E-32 2E-36 322.2 35.7 222 488-759 205-426 (433)
17 COG4191 Signal transduction hi 100.0 2.3E-29 4.9E-34 293.1 50.1 212 495-756 384-601 (603)
18 PRK10815 sensor protein PhoQ; 100.0 1.1E-30 2.4E-35 316.7 38.4 217 492-757 263-479 (485)
19 PRK09835 sensor kinase CusS; P 100.0 6.6E-30 1.4E-34 309.1 45.0 224 489-756 256-480 (482)
20 PRK10364 sensor protein ZraS; 100.0 4.6E-30 1E-34 309.4 43.3 214 494-758 236-450 (457)
21 TIGR03785 marine_sort_HK prote 100.0 8.8E-30 1.9E-34 320.8 44.5 224 488-755 478-703 (703)
22 PRK10549 signal transduction h 100.0 2.9E-30 6.2E-35 311.1 37.8 228 488-759 233-461 (466)
23 TIGR01386 cztS_silS_copS heavy 100.0 7E-30 1.5E-34 306.1 35.4 220 491-755 237-457 (457)
24 PRK10755 sensor protein BasS/P 100.0 1.2E-29 2.5E-34 295.8 35.0 216 491-757 133-351 (356)
25 PRK09470 cpxA two-component se 100.0 5.9E-29 1.3E-33 298.9 41.9 223 488-757 236-458 (461)
26 PRK10490 sensor protein KdpD; 100.0 7.8E-30 1.7E-34 328.4 32.1 224 490-758 659-884 (895)
27 TIGR02938 nifL_nitrog nitrogen 100.0 9.8E-30 2.1E-34 306.6 30.5 214 493-756 274-494 (494)
28 PRK11100 sensory histidine kin 100.0 9.3E-28 2E-32 289.0 43.6 220 493-757 254-474 (475)
29 PRK10337 sensor protein QseC; 100.0 2.3E-28 4.9E-33 293.6 38.0 216 491-754 233-449 (449)
30 PRK09467 envZ osmolarity senso 100.0 2.6E-28 5.7E-33 291.7 34.8 214 487-757 221-434 (435)
31 COG4251 Bacteriophytochrome (l 100.0 3.1E-28 6.7E-33 282.0 26.3 229 485-759 514-744 (750)
32 COG3852 NtrB Signal transducti 100.0 5.3E-28 1.1E-32 260.6 24.5 221 494-758 131-356 (363)
33 TIGR02966 phoR_proteo phosphat 100.0 1.2E-27 2.6E-32 273.2 28.0 218 495-754 114-333 (333)
34 PRK11073 glnL nitrogen regulat 100.0 2.7E-26 5.9E-31 266.2 29.1 217 494-756 129-347 (348)
35 PRK11360 sensory histidine kin 99.9 5.1E-25 1.1E-29 272.1 30.6 213 495-758 390-603 (607)
36 COG0642 BaeS Signal transducti 99.9 1.1E-24 2.3E-29 246.2 30.5 217 494-758 114-331 (336)
37 TIGR02916 PEP_his_kin putative 99.9 1.2E-23 2.5E-28 265.9 29.5 203 495-755 475-679 (679)
38 PRK11086 sensory histidine kin 99.9 9.7E-22 2.1E-26 241.4 40.6 194 496-758 340-537 (542)
39 PRK13560 hypothetical protein; 99.9 1.4E-23 2.9E-28 269.6 24.8 206 486-758 596-805 (807)
40 COG5000 NtrY Signal transducti 99.9 7.5E-22 1.6E-26 229.1 29.3 206 498-756 489-708 (712)
41 PRK11644 sensory histidine kin 99.9 2.9E-21 6.3E-26 234.8 30.9 196 492-756 299-494 (495)
42 PRK15053 dpiB sensor histidine 99.9 8E-21 1.7E-25 234.1 26.3 196 497-758 340-541 (545)
43 COG0745 OmpR Response regulato 99.9 5E-21 1.1E-25 209.2 17.0 121 1022-1170 1-121 (229)
44 COG4192 Signal transduction hi 99.8 3.4E-19 7.5E-24 199.7 26.9 211 497-757 453-667 (673)
45 COG3290 CitA Signal transducti 99.8 5.1E-17 1.1E-21 189.7 37.0 194 497-758 335-533 (537)
46 PRK13559 hypothetical protein; 99.8 4.2E-18 9.1E-23 198.9 23.3 185 495-757 170-360 (361)
47 PF02518 HATPase_c: Histidine 99.8 1.3E-18 2.9E-23 168.6 12.9 109 607-756 1-110 (111)
48 PRK10935 nitrate/nitrite senso 99.7 1.1E-16 2.3E-21 198.3 26.2 194 498-758 363-561 (565)
49 COG3437 Response regulator con 99.7 2E-17 4.4E-22 184.3 13.3 121 1020-1165 13-133 (360)
50 COG3706 PleD Response regulato 99.7 2.2E-16 4.8E-21 183.8 21.2 124 1020-1169 131-254 (435)
51 COG4753 Response regulator con 99.7 6.6E-17 1.4E-21 189.0 13.5 119 1022-1168 2-123 (475)
52 PRK10600 nitrate/nitrite senso 99.7 2E-15 4.3E-20 187.6 27.5 184 506-758 373-558 (569)
53 PF00072 Response_reg: Respons 99.7 3.1E-16 6.7E-21 151.1 15.7 111 1024-1162 1-112 (112)
54 COG2204 AtoC Response regulato 99.7 2.6E-16 5.6E-21 184.6 16.0 118 1022-1167 5-122 (464)
55 COG0784 CheY FOG: CheY-like re 99.7 9.3E-16 2E-20 151.7 16.6 121 1020-1167 4-126 (130)
56 COG2197 CitB Response regulato 99.6 3.6E-15 7.9E-20 161.6 16.6 118 1023-1168 2-121 (211)
57 COG4566 TtrR Response regulato 99.6 3.9E-15 8.4E-20 152.3 13.3 120 1021-1168 4-123 (202)
58 PRK09581 pleD response regulat 99.6 7.8E-14 1.7E-18 167.3 25.1 120 1020-1166 154-273 (457)
59 PLN03029 type-a response regul 99.6 1.8E-14 3.9E-19 157.6 16.6 138 1021-1164 8-145 (222)
60 PRK10547 chemotaxis protein Ch 99.6 1.5E-13 3.3E-18 170.0 25.0 146 569-758 343-525 (670)
61 COG4565 CitB Response regulato 99.6 2E-14 4.3E-19 149.9 14.2 117 1022-1166 1-119 (224)
62 PRK10046 dpiA two-component re 99.6 5.2E-14 1.1E-18 154.1 16.9 117 1021-1165 4-122 (225)
63 PRK11173 two-component respons 99.5 9.7E-14 2.1E-18 152.2 17.5 118 1022-1168 4-121 (237)
64 PRK10529 DNA-binding transcrip 99.5 1.2E-13 2.7E-18 149.6 18.0 118 1022-1168 2-119 (225)
65 PRK10816 DNA-binding transcrip 99.5 1.1E-13 2.4E-18 149.9 17.3 119 1022-1168 1-119 (223)
66 PRK09836 DNA-binding transcrip 99.5 1.8E-13 3.9E-18 148.7 17.4 119 1022-1168 1-119 (227)
67 PRK09468 ompR osmolarity respo 99.5 3.3E-13 7.1E-18 148.0 17.8 121 1021-1169 5-125 (239)
68 PRK10766 DNA-binding transcrip 99.5 2.8E-13 6E-18 146.4 17.0 118 1022-1168 3-120 (221)
69 PRK10643 DNA-binding transcrip 99.5 4.2E-13 9.1E-18 144.5 17.8 119 1022-1168 1-119 (222)
70 COG3947 Response regulator con 99.5 4.8E-14 1E-18 152.0 10.2 118 1022-1169 1-118 (361)
71 TIGR02154 PhoB phosphate regul 99.5 5.2E-13 1.1E-17 144.0 18.0 121 1022-1168 3-123 (226)
72 PRK10161 transcriptional regul 99.5 4.1E-13 8.8E-18 146.1 17.2 121 1022-1168 3-123 (229)
73 PRK13856 two-component respons 99.5 4.8E-13 1E-17 147.4 17.0 117 1023-1168 3-120 (241)
74 PRK10701 DNA-binding transcrip 99.5 5.3E-13 1.1E-17 146.6 17.2 117 1023-1168 3-119 (240)
75 PRK10430 DNA-binding transcrip 99.5 5E-13 1.1E-17 147.6 16.6 117 1022-1164 2-120 (239)
76 PRK10336 DNA-binding transcrip 99.5 7.8E-13 1.7E-17 142.2 17.7 119 1022-1168 1-119 (219)
77 PRK10955 DNA-binding transcrip 99.5 5.7E-13 1.2E-17 144.8 16.6 116 1023-1168 3-118 (232)
78 TIGR02875 spore_0_A sporulatio 99.5 5.8E-13 1.3E-17 149.0 17.0 121 1021-1167 2-124 (262)
79 PRK11517 transcriptional regul 99.5 1.1E-12 2.3E-17 141.8 17.8 118 1022-1168 1-118 (223)
80 TIGR03787 marine_sort_RR prote 99.5 9.9E-13 2.2E-17 142.7 17.2 118 1023-1168 2-121 (227)
81 PRK04184 DNA topoisomerase VI 99.4 4.2E-13 9.2E-18 160.8 12.8 117 605-758 30-154 (535)
82 PRK11083 DNA-binding response 99.4 2.1E-12 4.4E-17 139.7 16.8 119 1022-1168 4-122 (228)
83 TIGR01387 cztR_silR_copR heavy 99.4 2.4E-12 5.2E-17 138.2 17.1 118 1024-1169 1-118 (218)
84 PRK10840 transcriptional regul 99.4 2.2E-12 4.9E-17 140.0 16.6 120 1021-1168 3-127 (216)
85 CHL00148 orf27 Ycf27; Reviewed 99.4 3.2E-12 7E-17 139.6 17.4 119 1021-1168 6-124 (240)
86 PRK09958 DNA-binding transcrip 99.4 3.6E-12 7.8E-17 135.8 16.4 119 1022-1168 1-120 (204)
87 PRK14084 two-component respons 99.4 3.8E-12 8.1E-17 140.8 16.2 116 1022-1167 1-118 (246)
88 smart00387 HATPase_c Histidine 99.4 4.2E-12 9.1E-17 120.2 14.1 109 607-756 1-110 (111)
89 PRK10923 glnG nitrogen regulat 99.4 6E-12 1.3E-16 152.9 16.9 117 1022-1166 4-120 (469)
90 PRK15115 response regulator Gl 99.4 4.8E-12 1E-16 152.6 15.8 119 1021-1167 5-123 (444)
91 COG4567 Response regulator con 99.4 4E-12 8.7E-17 125.1 12.1 114 1023-1164 11-124 (182)
92 PRK09483 response regulator; P 99.4 1.1E-11 2.5E-16 133.3 16.8 119 1022-1168 2-122 (217)
93 PRK12555 chemotaxis-specific m 99.4 6.9E-12 1.5E-16 145.9 16.0 116 1022-1166 1-129 (337)
94 PRK10360 DNA-binding transcrip 99.4 1.1E-11 2.5E-16 131.1 16.1 116 1022-1168 2-119 (196)
95 PRK09935 transcriptional regul 99.4 1.6E-11 3.5E-16 131.0 17.2 119 1022-1168 4-124 (210)
96 PRK10365 transcriptional regul 99.4 5.3E-12 1.1E-16 152.0 14.6 118 1021-1166 5-122 (441)
97 PRK11361 acetoacetate metaboli 99.3 1E-11 2.2E-16 150.4 16.7 118 1021-1166 4-121 (457)
98 PRK11697 putative two-componen 99.3 1.1E-11 2.5E-16 136.1 15.5 115 1022-1167 2-118 (238)
99 TIGR02915 PEP_resp_reg putativ 99.3 9.9E-12 2.1E-16 150.0 15.8 113 1024-1166 1-118 (445)
100 PRK10710 DNA-binding transcrip 99.3 2.7E-11 5.9E-16 132.4 17.8 118 1022-1168 11-128 (240)
101 PRK15479 transcriptional regul 99.3 3.3E-11 7.2E-16 129.6 17.5 119 1022-1168 1-119 (221)
102 TIGR01818 ntrC nitrogen regula 99.3 1.4E-11 3E-16 149.5 15.6 115 1024-1166 1-115 (463)
103 PRK10100 DNA-binding transcrip 99.3 2.7E-11 5.9E-16 131.8 14.2 115 1021-1168 10-128 (216)
104 PRK00742 chemotaxis-specific m 99.3 5.4E-11 1.2E-15 139.4 16.9 117 1021-1166 3-132 (354)
105 PRK09390 fixJ response regulat 99.3 4.6E-11 1E-15 125.7 14.5 120 1021-1168 3-122 (202)
106 COG2201 CheB Chemotaxis respon 99.3 4.4E-11 9.6E-16 135.9 14.9 116 1022-1166 2-130 (350)
107 PF00512 HisKA: His Kinase A ( 99.3 2.3E-11 5E-16 107.4 9.9 67 494-560 1-68 (68)
108 PRK09581 pleD response regulat 99.2 9.5E-11 2.1E-15 140.7 17.4 118 1023-1166 4-121 (457)
109 PRK11475 DNA-binding transcrip 99.2 8.9E-11 1.9E-15 126.9 13.7 108 1034-1169 3-117 (207)
110 PRK10610 chemotaxis regulatory 99.2 4E-10 8.8E-15 108.2 16.8 122 1021-1168 5-127 (129)
111 PRK14868 DNA topoisomerase VI 99.2 8.2E-11 1.8E-15 143.5 14.2 128 587-755 21-160 (795)
112 TIGR01052 top6b DNA topoisomer 99.2 5.6E-11 1.2E-15 141.4 12.2 106 605-750 22-134 (488)
113 PRK13435 response regulator; P 99.2 3.6E-10 7.9E-15 114.4 16.2 116 1021-1168 5-122 (145)
114 PRK15369 two component system 99.2 5.2E-10 1.1E-14 118.4 17.0 120 1021-1168 3-124 (211)
115 PRK13558 bacterio-opsin activa 99.2 1.4E-10 2.9E-15 147.2 14.7 117 1022-1166 8-126 (665)
116 PRK10651 transcriptional regul 99.2 4.8E-10 1E-14 119.8 16.6 119 1022-1168 7-127 (216)
117 PRK10403 transcriptional regul 99.2 4.6E-10 1E-14 119.7 16.4 118 1022-1167 7-126 (215)
118 cd00075 HATPase_c Histidine ki 99.2 2.4E-10 5.2E-15 106.4 11.9 101 612-754 1-103 (103)
119 PRK14867 DNA topoisomerase VI 99.2 1.4E-10 3.1E-15 141.5 12.9 114 606-758 28-151 (659)
120 PRK15411 rcsA colanic acid cap 99.1 3.9E-10 8.5E-15 122.1 14.3 118 1023-1169 2-125 (207)
121 COG3707 AmiR Response regulato 99.1 4.3E-10 9.2E-15 116.6 12.0 115 1021-1164 5-120 (194)
122 COG0643 CheA Chemotaxis protei 99.1 2.1E-09 4.5E-14 134.1 18.4 141 572-758 393-575 (716)
123 TIGR01925 spIIAB anti-sigma F 99.1 8.9E-10 1.9E-14 111.1 12.0 97 607-753 35-135 (137)
124 PRK09191 two-component respons 99.1 2E-09 4.4E-14 120.0 16.0 117 1022-1169 138-256 (261)
125 PRK10693 response regulator of 99.0 1.2E-09 2.7E-14 125.1 12.4 89 1050-1166 2-91 (303)
126 PRK03660 anti-sigma F factor; 99.0 4.2E-09 9.1E-14 107.3 12.7 102 607-758 35-140 (146)
127 COG4585 Signal transduction hi 99.0 4.4E-07 9.6E-12 106.9 31.0 115 583-756 251-365 (365)
128 cd00156 REC Signal receiver do 98.9 1.3E-08 2.9E-13 93.2 13.1 112 1025-1164 1-112 (113)
129 COG3851 UhpB Signal transducti 98.9 8.5E-07 1.8E-11 98.9 27.2 194 492-755 300-493 (497)
130 COG2972 Predicted signal trans 98.8 9.1E-07 2E-11 107.4 27.6 187 493-757 257-453 (456)
131 COG3920 Signal transduction hi 98.8 1.3E-06 2.8E-11 95.5 24.5 192 494-758 18-217 (221)
132 KOG0519 Sensory transduction h 98.8 9.1E-08 2E-12 122.4 17.7 389 484-925 375-783 (786)
133 PRK15029 arginine decarboxylas 98.7 5.2E-08 1.1E-12 122.3 13.4 108 1022-1157 1-122 (755)
134 COG3850 NarQ Signal transducti 98.7 3.9E-06 8.4E-11 98.7 26.4 186 500-755 374-567 (574)
135 COG3279 LytT Response regulato 98.7 5.1E-08 1.1E-12 108.2 9.9 115 1022-1166 2-118 (244)
136 COG4564 Signal transduction hi 98.7 2.9E-05 6.3E-10 86.0 29.8 184 509-758 265-449 (459)
137 PRK04069 serine-protein kinase 98.6 2.8E-07 6.1E-12 95.9 11.9 102 608-757 39-144 (161)
138 COG3275 LytS Putative regulato 98.4 2.6E-05 5.5E-10 90.6 23.0 130 566-758 414-553 (557)
139 smart00388 HisKA His Kinase A 98.4 1E-06 2.3E-11 75.4 8.3 64 495-559 2-65 (66)
140 KOG0787 Dehydrogenase kinase [ 98.4 1.4E-05 3.1E-10 90.2 18.7 150 566-756 213-380 (414)
141 PRK15426 putative diguanylate 98.4 4.4E-05 9.6E-10 95.3 24.6 72 274-349 220-294 (570)
142 TIGR01924 rsbW_low_gc serine-p 98.4 3E-06 6.5E-11 88.1 11.7 101 609-757 40-144 (159)
143 PF14501 HATPase_c_5: GHKL dom 98.2 1.3E-05 2.9E-10 76.4 12.4 92 608-754 2-97 (100)
144 PRK11107 hybrid sensory histid 98.2 1.3E-05 2.8E-10 105.6 15.4 118 1018-1165 533-650 (919)
145 cd00082 HisKA Histidine Kinase 98.2 9.6E-06 2.1E-10 68.8 8.5 62 495-556 4-65 (65)
146 COG3706 PleD Response regulato 98.1 2.3E-06 5E-11 100.8 5.1 92 1046-1167 13-104 (435)
147 PF02743 Cache_1: Cache domain 98.0 4E-06 8.8E-11 76.7 3.9 72 277-351 1-73 (81)
148 TIGR00585 mutl DNA mismatch re 97.8 0.00012 2.5E-09 84.7 11.6 97 610-753 21-125 (312)
149 COG1389 DNA topoisomerase VI, 97.6 0.00017 3.8E-09 83.4 8.3 115 608-761 33-155 (538)
150 PF13581 HATPase_c_2: Histidin 97.4 0.001 2.2E-08 65.9 10.3 93 608-753 28-124 (125)
151 smart00448 REC cheY-homologous 96.6 0.012 2.7E-07 45.7 8.2 54 1023-1099 2-55 (55)
152 PF06490 FleQ: Flagellar regul 96.4 0.019 4.2E-07 55.8 9.6 106 1023-1164 1-107 (109)
153 PRK00095 mutL DNA mismatch rep 96.2 0.018 3.8E-07 72.7 10.5 87 611-744 22-114 (617)
154 COG2172 RsbW Anti-sigma regula 96.2 0.05 1.1E-06 55.8 11.5 94 607-750 36-134 (146)
155 PRK02261 methylaspartate mutas 95.0 0.41 8.8E-06 48.7 13.1 118 1021-1166 3-135 (137)
156 cd02071 MM_CoA_mut_B12_BD meth 94.9 0.59 1.3E-05 46.4 13.7 107 1028-1162 10-121 (122)
157 PF13589 HATPase_c_3: Histidin 94.6 0.018 3.9E-07 58.4 2.1 67 684-755 35-106 (137)
158 TIGR00640 acid_CoA_mut_C methy 93.5 2.5 5.4E-05 42.7 14.9 112 1028-1165 13-127 (132)
159 PRK05559 DNA topoisomerase IV 91.7 0.33 7.1E-06 61.4 7.2 83 608-733 34-131 (631)
160 cd02067 B12-binding B12 bindin 91.5 2.1 4.6E-05 42.0 11.3 95 1028-1150 10-109 (119)
161 COG4999 Uncharacterized domain 90.2 1 2.2E-05 43.9 7.1 113 1018-1162 8-122 (140)
162 PRK05218 heat shock protein 90 90.1 0.78 1.7E-05 58.0 8.3 57 684-744 74-142 (613)
163 TIGR01059 gyrB DNA gyrase, B s 89.2 0.68 1.5E-05 59.0 6.9 82 608-732 27-123 (654)
164 PF03709 OKR_DC_1_N: Orn/Lys/A 89.0 2 4.4E-05 42.2 8.7 103 1035-1165 7-112 (115)
165 TIGR01055 parE_Gneg DNA topois 89.0 0.53 1.1E-05 59.5 5.6 50 684-733 63-124 (625)
166 TIGR03815 CpaE_hom_Actino heli 88.0 1.7 3.6E-05 50.6 8.6 85 1045-1165 1-86 (322)
167 PRK05644 gyrB DNA gyrase subun 87.7 0.98 2.1E-05 57.3 6.9 82 608-732 34-130 (638)
168 PF00072 Response_reg: Respons 87.4 9.4 0.0002 36.0 12.1 109 776-922 2-111 (112)
169 PRK14083 HSP90 family protein; 86.7 0.76 1.7E-05 57.7 5.0 46 684-729 64-116 (601)
170 COG5381 Uncharacterized protei 86.6 1.5 3.3E-05 44.1 5.9 24 614-637 66-89 (184)
171 TIGR01501 MthylAspMutase methy 84.9 16 0.00035 37.0 12.5 109 1030-1166 14-133 (134)
172 PTZ00272 heat shock protein 83 84.2 0.81 1.8E-05 58.3 3.6 20 684-703 73-92 (701)
173 COG2185 Sbm Methylmalonyl-CoA 83.5 28 0.0006 35.7 13.4 120 1021-1166 12-138 (143)
174 COG0323 MutL DNA mismatch repa 83.5 1.5 3.2E-05 55.7 5.5 27 684-710 54-80 (638)
175 PF02310 B12-binding: B12 bind 82.9 9.3 0.0002 37.2 9.9 93 1030-1151 13-112 (121)
176 cd04728 ThiG Thiazole synthase 82.8 12 0.00026 41.6 11.3 56 1104-1165 164-224 (248)
177 cd02072 Glm_B12_BD B12 binding 82.3 29 0.00062 35.0 12.9 105 1030-1162 12-127 (128)
178 PRK00208 thiG thiazole synthas 82.3 13 0.00027 41.4 11.3 56 1104-1165 164-224 (250)
179 COG0745 OmpR Response regulato 80.7 18 0.00038 40.1 12.1 116 775-928 3-118 (229)
180 PTZ00130 heat shock protein 90 78.9 2.6 5.7E-05 54.1 5.4 45 684-728 136-191 (814)
181 PRK15399 lysine decarboxylase 76.3 20 0.00044 46.0 12.1 99 1023-1151 2-106 (713)
182 PRK00043 thiE thiamine-phospha 75.1 39 0.00085 36.3 12.7 73 1088-1166 124-209 (212)
183 cd02070 corrinoid_protein_B12- 75.0 25 0.00053 38.1 11.0 99 1022-1149 83-190 (201)
184 PRK11677 hypothetical protein; 74.7 30 0.00065 35.1 10.5 32 452-483 8-39 (134)
185 PRK15400 lysine decarboxylase 74.0 22 0.00048 45.7 11.6 80 1023-1132 2-87 (714)
186 smart00433 TOP2c Topoisomerase 74.0 4 8.6E-05 51.6 5.1 48 684-731 34-93 (594)
187 PRK09426 methylmalonyl-CoA mut 73.3 29 0.00062 44.9 12.5 117 1022-1166 583-708 (714)
188 cd02069 methionine_synthase_B1 73.2 30 0.00064 38.0 11.0 101 1022-1150 89-201 (213)
189 PRK01130 N-acetylmannosamine-6 65.3 63 0.0014 35.3 11.7 56 1088-1149 139-201 (221)
190 COG2204 AtoC Response regulato 64.1 56 0.0012 39.9 11.7 118 774-929 6-123 (464)
191 COG5385 Uncharacterized protei 63.9 1.9E+02 0.0042 30.3 17.3 185 498-745 18-204 (214)
192 PRK00278 trpC indole-3-glycero 63.9 1.1E+02 0.0024 34.5 13.5 104 1025-1157 139-252 (260)
193 COG3105 Uncharacterized protei 59.9 87 0.0019 31.3 9.9 20 443-462 8-27 (138)
194 COG3290 CitA Signal transducti 59.9 50 0.0011 40.7 10.1 36 287-325 136-171 (537)
195 TIGR00007 phosphoribosylformim 58.2 94 0.002 34.1 11.5 56 1088-1149 158-217 (230)
196 PF06295 DUF1043: Protein of u 57.8 92 0.002 31.3 10.2 18 528-545 64-81 (128)
197 TIGR02370 pyl_corrinoid methyl 57.8 45 0.00097 36.0 8.6 98 1023-1149 86-192 (197)
198 PRK14939 gyrB DNA gyrase subun 57.0 8.8 0.00019 49.5 3.5 88 602-732 25-130 (756)
199 PF10669 Phage_Gp23: Protein g 56.5 1.8E+02 0.0039 27.5 11.9 17 489-505 64-80 (121)
200 cd04729 NanE N-acetylmannosami 55.7 1.3E+02 0.0029 32.7 12.1 42 1102-1149 164-205 (219)
201 PRK15347 two component system 55.5 77 0.0017 42.1 12.2 120 773-926 691-810 (921)
202 PRK05458 guanosine 5'-monophos 55.2 1.6E+02 0.0034 34.6 12.9 97 1023-1149 113-229 (326)
203 PF05690 ThiG: Thiazole biosyn 54.4 1.1E+02 0.0024 34.0 10.7 97 1036-1163 114-222 (247)
204 TIGR01334 modD putative molybd 50.6 53 0.0012 37.5 8.0 71 1047-1148 191-261 (277)
205 PRK10558 alpha-dehydro-beta-de 49.7 2.1E+02 0.0046 32.3 12.6 73 1088-1164 40-113 (256)
206 cd05212 NAD_bind_m-THF_DH_Cycl 48.2 53 0.0012 33.6 6.9 55 1018-1100 25-83 (140)
207 cd00331 IGPS Indole-3-glycerol 48.0 2.7E+02 0.0059 30.2 13.0 43 1103-1149 158-200 (217)
208 TIGR02956 TMAO_torS TMAO reduc 47.5 1.1E+02 0.0025 40.9 11.9 121 772-927 702-822 (968)
209 PRK13587 1-(5-phosphoribosyl)- 47.0 91 0.002 34.6 9.1 55 1089-1149 163-220 (234)
210 PRK10841 hybrid sensory kinase 46.8 1.5E+02 0.0032 39.9 12.6 117 772-926 801-917 (924)
211 cd00452 KDPG_aldolase KDPG and 46.7 1.2E+02 0.0026 32.4 9.7 70 1049-1150 102-171 (190)
212 KOG2353 L-type voltage-depende 46.5 17 0.00038 48.6 3.8 80 271-350 422-510 (1104)
213 PRK13111 trpA tryptophan synth 46.3 57 0.0012 36.9 7.4 60 1102-1166 75-140 (258)
214 PRK05703 flhF flagellar biosyn 46.2 1.8E+02 0.004 35.3 12.2 111 1020-1154 250-369 (424)
215 CHL00162 thiG thiamin biosynth 45.8 2E+02 0.0044 32.4 11.1 105 1029-1165 122-238 (267)
216 PF03602 Cons_hypoth95: Conser 45.5 69 0.0015 34.2 7.6 68 1022-1112 66-139 (183)
217 PRK11466 hybrid sensory histid 45.3 1.6E+02 0.0034 39.3 12.7 120 771-927 680-799 (914)
218 PF14827 Cache_3: Sensory doma 45.2 23 0.00051 34.6 3.7 42 271-317 73-114 (116)
219 cd04726 KGPDC_HPS 3-Keto-L-gul 45.0 2.6E+02 0.0056 29.8 12.1 84 1035-1149 93-185 (202)
220 cd04723 HisA_HisF Phosphoribos 44.9 1.7E+02 0.0036 32.5 10.8 54 1090-1149 161-217 (233)
221 KOG1979 DNA mismatch repair pr 44.5 31 0.00067 42.5 5.0 25 685-709 59-83 (694)
222 TIGR01058 parE_Gpos DNA topois 43.9 20 0.00044 45.7 3.7 50 684-733 67-128 (637)
223 TIGR00736 nifR3_rel_arch TIM-b 43.5 1.1E+02 0.0023 34.2 8.8 58 1087-1149 160-219 (231)
224 PRK07896 nicotinate-nucleotide 43.5 89 0.0019 36.0 8.4 71 1047-1148 202-272 (289)
225 PF10090 DUF2328: Uncharacteri 43.5 4.4E+02 0.0096 28.2 19.7 170 511-743 2-174 (182)
226 PF01596 Methyltransf_3: O-met 43.4 1.1E+02 0.0024 33.4 8.8 58 1021-1097 70-130 (205)
227 TIGR03239 GarL 2-dehydro-3-deo 43.4 3.3E+02 0.0071 30.6 12.8 72 1088-1163 33-105 (249)
228 PRK00748 1-(5-phosphoribosyl)- 42.6 99 0.0021 33.9 8.6 56 1088-1149 159-219 (233)
229 cd00564 TMP_TenI Thiamine mono 42.5 1.7E+02 0.0037 30.6 10.1 55 1088-1149 115-177 (196)
230 TIGR03151 enACPred_II putative 42.2 2E+02 0.0043 33.4 11.3 83 1037-1149 101-189 (307)
231 cd04727 pdxS PdxS is a subunit 41.7 91 0.002 35.5 7.9 61 1102-1168 181-248 (283)
232 PRK10128 2-keto-3-deoxy-L-rham 41.5 3.3E+02 0.0072 31.0 12.6 75 1088-1166 39-113 (267)
233 PF10087 DUF2325: Uncharacteri 41.5 1.6E+02 0.0036 27.7 8.7 90 1023-1140 1-93 (97)
234 PRK13125 trpA tryptophan synth 40.8 2.8E+02 0.0061 30.9 11.8 89 1034-1151 118-215 (244)
235 TIGR01037 pyrD_sub1_fam dihydr 40.7 2.2E+02 0.0047 32.7 11.3 59 1104-1168 223-287 (300)
236 PF01408 GFO_IDH_MocA: Oxidore 39.9 3.1E+02 0.0068 26.2 10.8 45 1122-1166 65-111 (120)
237 PRK11359 cyclic-di-GMP phospho 39.5 1.5E+02 0.0032 38.7 10.9 102 1036-1164 682-794 (799)
238 PRK11889 flhF flagellar biosyn 39.2 3.7E+02 0.0079 32.7 12.7 113 1020-1154 268-389 (436)
239 PTZ00314 inosine-5'-monophosph 39.0 2.2E+02 0.0047 35.4 11.5 29 1121-1149 344-372 (495)
240 TIGR00262 trpA tryptophan synt 38.6 97 0.0021 35.0 7.7 60 1102-1166 73-138 (256)
241 TIGR02311 HpaI 2,4-dihydroxyhe 38.1 4.1E+02 0.0089 29.8 12.6 74 1088-1165 33-107 (249)
242 COG0512 PabA Anthranilate/para 37.4 55 0.0012 35.1 5.2 95 1022-1149 2-98 (191)
243 PLN03237 DNA topoisomerase 2; 37.4 48 0.001 45.7 5.8 55 684-738 112-178 (1465)
244 TIGR00693 thiE thiamine-phosph 37.3 2E+02 0.0044 30.5 9.7 56 1088-1149 116-179 (196)
245 PRK12724 flagellar biosynthesi 37.3 3.5E+02 0.0075 33.0 12.3 109 1020-1153 251-370 (432)
246 PRK06096 molybdenum transport 37.3 1.1E+02 0.0024 35.0 8.0 71 1047-1148 192-262 (284)
247 PLN02591 tryptophan synthase 37.2 1E+02 0.0022 34.8 7.5 59 1102-1166 65-129 (250)
248 PRK09966 putative inner membra 37.1 5.1E+02 0.011 30.7 14.2 32 318-349 74-106 (407)
249 PRK11677 hypothetical protein; 37.0 4.5E+02 0.0097 26.8 11.2 39 444-482 4-42 (134)
250 PRK11840 bifunctional sulfur c 37.0 3.4E+02 0.0073 31.8 11.7 54 1104-1163 238-296 (326)
251 PRK05458 guanosine 5'-monophos 36.9 94 0.002 36.4 7.4 54 1089-1148 112-166 (326)
252 PF02254 TrkA_N: TrkA-N domain 36.8 3.2E+02 0.007 26.0 10.3 95 1020-1149 20-115 (116)
253 cd04730 NPD_like 2-Nitropropan 36.3 4.1E+02 0.009 29.0 12.3 57 1088-1150 122-185 (236)
254 TIGR00078 nadC nicotinate-nucl 35.9 2E+02 0.0043 32.7 9.7 69 1047-1149 181-249 (265)
255 TIGR01302 IMP_dehydrog inosine 35.9 3.2E+02 0.0069 33.5 12.2 100 1020-1149 235-355 (450)
256 TIGR00735 hisF imidazoleglycer 35.8 3.5E+02 0.0076 30.3 11.7 52 1104-1161 188-246 (254)
257 PRK12704 phosphodiesterase; Pr 35.5 33 0.00071 42.8 3.6 44 1123-1166 251-296 (520)
258 PRK07428 nicotinate-nucleotide 35.0 1.3E+02 0.0029 34.5 8.1 70 1049-1149 201-270 (288)
259 cd04724 Tryptophan_synthase_al 34.9 1.4E+02 0.003 33.4 8.2 58 1102-1165 63-126 (242)
260 TIGR01163 rpe ribulose-phospha 34.5 3.1E+02 0.0067 29.3 10.7 59 1089-1149 127-192 (210)
261 PRK07107 inosine 5-monophospha 34.4 1.7E+02 0.0037 36.4 9.5 105 1020-1149 253-380 (502)
262 PLN02274 inosine-5'-monophosph 34.3 2.8E+02 0.0061 34.6 11.4 99 1021-1149 260-379 (505)
263 TIGR00343 pyridoxal 5'-phospha 34.2 57 0.0012 37.2 4.9 59 1102-1166 184-249 (287)
264 PRK05567 inosine 5'-monophosph 34.1 4.1E+02 0.0089 32.9 12.9 43 1104-1149 317-359 (486)
265 PRK08883 ribulose-phosphate 3- 34.0 2E+02 0.0042 31.8 9.0 107 1037-1166 98-216 (220)
266 PRK12723 flagellar biosynthesi 33.9 4.8E+02 0.01 31.4 12.9 110 1020-1153 205-323 (388)
267 COG0326 HtpG Molecular chapero 33.7 32 0.00069 43.2 3.0 47 684-731 75-133 (623)
268 cd04732 HisA HisA. Phosphorib 33.4 4E+02 0.0087 29.1 11.6 54 1090-1149 162-218 (234)
269 PRK05848 nicotinate-nucleotide 32.7 3.2E+02 0.007 31.2 10.7 71 1048-1149 186-256 (273)
270 cd02065 B12-binding_like B12 b 32.6 2.1E+02 0.0046 27.6 8.3 79 1028-1133 10-92 (125)
271 PRK11173 two-component respons 32.5 5.5E+02 0.012 27.5 12.5 115 774-927 5-119 (237)
272 COG4122 Predicted O-methyltran 32.5 1.3E+02 0.0028 33.2 7.2 58 1023-1101 86-145 (219)
273 PRK10529 DNA-binding transcrip 32.1 5.9E+02 0.013 26.8 12.5 73 850-927 45-117 (225)
274 PRK10701 DNA-binding transcrip 32.1 5.9E+02 0.013 27.3 12.6 114 775-927 4-117 (240)
275 PRK09468 ompR osmolarity respo 32.1 6.4E+02 0.014 27.0 12.9 117 773-927 6-122 (239)
276 PRK11091 aerobic respiration c 31.6 3.4E+02 0.0075 35.4 12.4 121 771-927 524-644 (779)
277 PRK08385 nicotinate-nucleotide 31.6 2.7E+02 0.0058 32.0 9.8 97 1023-1149 156-258 (278)
278 PRK12726 flagellar biosynthesi 31.4 6.2E+02 0.013 30.6 12.9 112 1021-1154 234-354 (407)
279 PRK06731 flhF flagellar biosyn 31.1 4.9E+02 0.011 29.7 11.8 113 1021-1153 103-222 (270)
280 PRK15041 methyl-accepting chem 31.1 1E+03 0.022 30.0 15.9 16 462-477 212-227 (554)
281 cd02068 radical_SAM_B12_BD B12 31.0 4.4E+02 0.0096 25.9 10.3 104 1032-1164 3-110 (127)
282 TIGR00566 trpG_papA glutamine 30.9 1.2E+02 0.0026 32.4 6.6 38 1024-1061 2-39 (188)
283 PRK06774 para-aminobenzoate sy 30.8 78 0.0017 33.8 5.2 38 1024-1061 2-39 (191)
284 TIGR00734 hisAF_rel hisA/hisF 30.7 1.4E+02 0.003 32.9 7.2 55 1089-1149 155-212 (221)
285 PTZ00109 DNA gyrase subunit b; 30.5 6.5 0.00014 51.0 -3.6 15 685-699 163-177 (903)
286 KOG1978 DNA mismatch repair pr 30.4 50 0.0011 41.6 4.0 24 684-707 51-74 (672)
287 PF02581 TMP-TENI: Thiamine mo 30.4 2.8E+02 0.0061 29.2 9.3 82 1036-1148 87-175 (180)
288 PRK03958 tRNA 2'-O-methylase; 30.3 3.7E+02 0.008 28.7 9.8 88 1022-1138 32-121 (176)
289 PRK14974 cell division protein 30.3 4.9E+02 0.011 30.7 12.0 113 1020-1154 167-291 (336)
290 PF07652 Flavi_DEAD: Flaviviru 30.1 1.8E+02 0.0038 30.2 7.2 88 1020-1131 32-136 (148)
291 PRK00811 spermidine synthase; 30.1 2.1E+02 0.0045 32.8 8.8 70 1022-1115 101-182 (283)
292 TIGR01163 rpe ribulose-phospha 29.4 2.4E+02 0.0052 30.2 8.8 67 1090-1162 29-98 (210)
293 PRK01130 N-acetylmannosamine-6 29.4 1.5E+02 0.0033 32.3 7.3 55 1103-1163 44-116 (221)
294 PRK04180 pyridoxal biosynthesi 29.1 87 0.0019 35.9 5.2 60 1102-1167 190-256 (293)
295 KOG1977 DNA mismatch repair pr 29.1 86 0.0019 39.6 5.5 56 611-709 21-76 (1142)
296 PRK13566 anthranilate synthase 29.1 1.6E+02 0.0035 38.3 8.4 38 1018-1055 523-560 (720)
297 PRK05742 nicotinate-nucleotide 29.1 2.4E+02 0.0051 32.4 8.8 67 1049-1149 194-260 (277)
298 PRK06543 nicotinate-nucleotide 29.0 3.9E+02 0.0085 30.7 10.5 67 1048-1148 197-263 (281)
299 PRK07695 transcriptional regul 28.8 4E+02 0.0086 28.6 10.3 71 1088-1165 115-197 (201)
300 cd01572 QPRTase Quinolinate ph 28.4 1.3E+02 0.0028 34.3 6.6 64 1105-1174 170-233 (268)
301 PRK05581 ribulose-phosphate 3- 28.2 5.8E+02 0.013 27.5 11.6 74 1088-1164 131-217 (220)
302 PHA02569 39 DNA topoisomerase 28.1 31 0.00067 43.7 1.7 51 685-735 81-145 (602)
303 cd00429 RPE Ribulose-5-phospha 28.0 4.8E+02 0.01 27.7 10.9 59 1089-1149 128-193 (211)
304 TIGR02154 PhoB phosphate regul 27.8 7.1E+02 0.015 25.9 12.5 76 850-927 46-121 (226)
305 cd02809 alpha_hydroxyacid_oxid 27.3 5.3E+02 0.011 29.7 11.5 58 1088-1149 193-255 (299)
306 PLN02617 imidazole glycerol ph 27.2 5.3E+02 0.011 32.5 12.1 69 1089-1163 453-531 (538)
307 PTZ00108 DNA topoisomerase 2-l 27.1 54 0.0012 45.2 3.7 50 685-734 96-157 (1388)
308 PRK06843 inosine 5-monophospha 27.0 5.6E+02 0.012 31.1 11.8 102 1020-1149 164-284 (404)
309 PRK10161 transcriptional regul 26.8 7.8E+02 0.017 26.0 12.3 117 775-927 5-121 (229)
310 PLN02823 spermine synthase 26.8 2.5E+02 0.0054 33.1 8.7 55 1022-1100 128-188 (336)
311 cd00381 IMPDH IMPDH: The catal 26.7 5.4E+02 0.012 30.1 11.6 29 1121-1149 197-225 (325)
312 PRK10669 putative cation:proto 26.6 6.3E+02 0.014 31.8 13.0 71 1087-1168 480-550 (558)
313 cd02940 DHPD_FMN Dihydropyrimi 26.3 2.6E+02 0.0057 32.1 8.8 42 1104-1149 239-280 (299)
314 CHL00200 trpA tryptophan synth 26.2 1.9E+02 0.0041 32.9 7.4 57 1102-1164 78-140 (263)
315 COG2022 ThiG Uncharacterized e 26.1 5.5E+02 0.012 28.7 10.3 85 1036-1150 121-211 (262)
316 PTZ00170 D-ribulose-5-phosphat 26.0 2.2E+02 0.0049 31.4 7.9 109 1036-1167 105-223 (228)
317 smart00052 EAL Putative diguan 25.9 2.6E+02 0.0056 30.2 8.4 93 1036-1155 137-240 (241)
318 TIGR01304 IMP_DH_rel_2 IMP deh 25.7 2.8E+02 0.0062 33.1 9.0 29 1121-1149 255-283 (369)
319 PF01729 QRPTase_C: Quinolinat 25.7 2.1E+02 0.0046 30.2 7.2 71 1048-1149 84-154 (169)
320 PRK10816 DNA-binding transcrip 25.4 8.1E+02 0.018 25.8 12.6 74 850-927 44-117 (223)
321 PLN03029 type-a response regul 25.4 7.3E+02 0.016 27.0 11.8 138 773-926 9-146 (222)
322 cd01573 modD_like ModD; Quinol 25.2 2.5E+02 0.0055 32.0 8.2 70 1049-1149 188-257 (272)
323 PRK07259 dihydroorotate dehydr 25.1 5.8E+02 0.013 29.2 11.4 59 1103-1167 222-286 (301)
324 COG0313 Predicted methyltransf 24.9 2.4E+02 0.0052 32.1 7.7 83 1019-1131 28-116 (275)
325 cd04722 TIM_phosphate_binding 24.7 4.7E+02 0.01 26.9 9.8 56 1088-1149 136-198 (200)
326 PRK04457 spermidine synthase; 24.6 6.7E+02 0.014 28.3 11.5 71 1021-1115 90-168 (262)
327 PF09936 Methyltrn_RNA_4: SAM- 24.3 4.8E+02 0.01 28.0 9.3 103 1022-1153 43-161 (185)
328 PRK10955 DNA-binding transcrip 24.1 8.1E+02 0.017 25.8 11.8 72 851-927 45-116 (232)
329 cd00331 IGPS Indole-3-glycerol 23.8 2.9E+02 0.0062 30.0 8.2 67 1091-1163 48-116 (217)
330 TIGR00064 ftsY signal recognit 23.7 6.4E+02 0.014 28.7 11.1 112 1020-1153 99-228 (272)
331 PRK08745 ribulose-phosphate 3- 23.6 4.9E+02 0.011 28.8 9.8 106 1037-1165 102-219 (223)
332 cd04741 DHOD_1A_like Dihydroor 23.4 1.3E+02 0.0029 34.6 5.6 40 1105-1148 231-270 (294)
333 PRK05749 3-deoxy-D-manno-octul 23.3 5.8E+02 0.013 30.5 11.5 111 1021-1167 262-388 (425)
334 PRK07649 para-aminobenzoate/an 23.1 1E+02 0.0022 33.2 4.4 38 1024-1061 2-39 (195)
335 cd01568 QPRTase_NadC Quinolina 23.1 4.4E+02 0.0096 29.9 9.7 71 1047-1149 184-254 (269)
336 PRK13856 two-component respons 23.0 9.6E+02 0.021 25.8 12.6 73 850-927 45-118 (241)
337 TIGR03128 RuMP_HxlA 3-hexulose 23.0 9.3E+02 0.02 25.6 14.4 96 1035-1163 92-204 (206)
338 PRK08072 nicotinate-nucleotide 22.7 1.8E+02 0.004 33.2 6.5 55 1104-1164 175-229 (277)
339 PF14689 SPOB_a: Sensor_kinase 22.7 2.2E+02 0.0048 24.7 5.6 43 498-545 15-57 (62)
340 PRK09836 DNA-binding transcrip 22.6 9.2E+02 0.02 25.4 12.4 74 850-927 44-117 (227)
341 TIGR03088 stp2 sugar transfera 22.6 5.5E+02 0.012 29.8 10.9 108 1021-1167 229-338 (374)
342 TIGR00262 trpA tryptophan synt 22.4 8.6E+02 0.019 27.4 11.7 43 1103-1151 186-228 (256)
343 PRK10060 RNase II stability mo 22.1 5E+02 0.011 33.4 11.1 103 1036-1165 545-658 (663)
344 COG0157 NadC Nicotinate-nucleo 22.1 2.2E+02 0.0048 32.5 6.7 55 1104-1164 175-229 (280)
345 PRK02083 imidazole glycerol ph 21.9 3.7E+02 0.008 30.0 8.7 68 1088-1161 166-244 (253)
346 PRK08649 inosine 5-monophospha 21.9 8E+02 0.017 29.3 11.8 55 1087-1149 153-214 (368)
347 PRK10643 DNA-binding transcrip 21.9 9.1E+02 0.02 25.1 12.5 73 851-927 45-117 (222)
348 TIGR00078 nadC nicotinate-nucl 21.8 2.2E+02 0.0047 32.4 6.8 64 1105-1174 166-229 (265)
349 cd01748 GATase1_IGP_Synthase T 21.8 2.9E+02 0.0063 29.5 7.6 32 1024-1055 1-32 (198)
350 PF00977 His_biosynth: Histidi 21.7 4.2E+02 0.0091 29.3 9.0 55 1089-1149 162-219 (229)
351 PRK05637 anthranilate synthase 21.7 2.6E+02 0.0057 30.4 7.2 34 1022-1055 2-35 (208)
352 PRK06895 putative anthranilate 21.6 2.5E+02 0.0054 29.9 7.0 32 1022-1053 2-33 (190)
353 TIGR00417 speE spermidine synt 21.6 4.9E+02 0.011 29.4 9.7 70 1022-1115 97-177 (270)
354 TIGR01305 GMP_reduct_1 guanosi 21.4 6.1E+02 0.013 29.9 10.3 57 1087-1150 120-178 (343)
355 PRK10923 glnG nitrogen regulat 21.3 8E+02 0.017 29.9 12.3 115 774-926 5-119 (469)
356 TIGR01302 IMP_dehydrog inosine 21.3 2.6E+02 0.0056 34.3 7.9 55 1088-1148 236-291 (450)
357 cd01572 QPRTase Quinolinate ph 21.3 6.8E+02 0.015 28.5 10.7 68 1047-1148 185-252 (268)
358 PLN02871 UDP-sulfoquinovose:DA 21.3 8.2E+02 0.018 29.7 12.4 106 1021-1167 290-400 (465)
359 PF08348 PAS_6: YheO-like PAS 21.2 1.2E+02 0.0025 30.2 3.9 71 243-323 39-113 (118)
360 PRK07028 bifunctional hexulose 21.2 7.7E+02 0.017 29.9 11.9 73 1088-1167 131-212 (430)
361 PRK06106 nicotinate-nucleotide 21.2 3.2E+02 0.0069 31.4 8.0 68 1048-1149 198-265 (281)
362 cd01948 EAL EAL domain. This d 21.0 2.7E+02 0.0059 29.9 7.4 93 1036-1155 136-239 (240)
363 TIGR01818 ntrC nitrogen regula 20.9 6.8E+02 0.015 30.4 11.5 73 850-926 42-114 (463)
364 cd02810 DHOD_DHPD_FMN Dihydroo 20.9 3.5E+02 0.0075 30.7 8.4 41 1104-1148 230-270 (289)
365 cd04731 HisF The cyclase subun 20.7 4.4E+02 0.0096 29.1 9.0 56 1088-1149 40-99 (243)
366 TIGR01306 GMP_reduct_2 guanosi 20.7 1.4E+03 0.029 26.9 13.0 42 1103-1150 186-227 (321)
367 COG2200 Rtn c-di-GMP phosphodi 20.6 1E+03 0.022 26.7 11.9 100 1036-1162 140-250 (256)
368 PRK10046 dpiA two-component re 20.4 1.1E+03 0.023 25.4 12.0 73 851-927 51-123 (225)
369 PRK11086 sensory histidine kin 20.4 1.3E+03 0.029 28.0 14.2 31 288-321 143-173 (542)
370 PRK10415 tRNA-dihydrouridine s 20.3 5.1E+02 0.011 30.2 9.7 41 1103-1149 182-223 (321)
371 PRK01033 imidazole glycerol ph 20.2 2.7E+02 0.0058 31.4 7.1 54 1090-1149 168-225 (258)
372 PRK04302 triosephosphate isome 20.1 1E+03 0.022 26.0 11.5 42 1104-1150 161-202 (223)
373 PRK06978 nicotinate-nucleotide 20.1 3.3E+02 0.0071 31.5 7.7 68 1048-1149 209-276 (294)
374 PF03328 HpcH_HpaI: HpcH/HpaI 20.0 8.5E+02 0.018 26.5 10.9 77 1087-1168 20-109 (221)
No 1
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=100.00 E-value=3.8e-58 Score=592.01 Aligned_cols=483 Identities=26% Similarity=0.413 Sum_probs=359.7
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccc
Q 001044 486 RKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELE 565 (1177)
Q Consensus 486 ~~ae~~~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~l~ 565 (1177)
++++++++.|++|+++|||||||||++|.|++++|.. ...++++.+++..|..++.+|.++|+++||++|+|++.+.++
T Consensus 438 ~~~e~a~~~k~~fla~iSHELRTPL~~I~g~lelL~~-~~~~~~~~~~l~~i~~~~~~L~~lI~dlLd~srie~~~~~l~ 516 (924)
T PRK10841 438 QAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQT-KELPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 516 (924)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceee
Confidence 4456677889999999999999999999999999864 446778888999999999999999999999999999999999
Q ss_pred ceeccHHHHHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccCCCeEEEEeeccccCCCC
Q 001044 566 NTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSK 645 (1177)
Q Consensus 566 ~~~~dL~~li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~ 645 (1177)
.++|++.+++++++..+...+..|++.+.+.++++.+..+.+|+.+|+|||.|||+||+|||+.|.|.+.+...
T Consensus 517 ~~~~~l~~li~~v~~~~~~~~~~k~i~l~~~i~~~~~~~v~~D~~~L~qvl~NLl~NAik~t~~G~I~I~v~~~------ 590 (924)
T PRK10841 517 PREFSPREVINHITANYLPLVVKKRLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVLHVRVD------ 590 (924)
T ss_pred eEEecHHHHHHHHHHHHHHHHHHcCcEEEEEeCCCCCcEEEECHHHHHHHHHHHHHHHHhhCCCCcEEEEEEEe------
Confidence 99999999999999999999999999999888887777899999999999999999999999999888765321
Q ss_pred CCCcCCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHH
Q 001044 646 NTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLS 725 (1177)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLa 725 (1177)
...+.|+|.|||+||+++.++++|+|||+.+.+..+..+|+||||+
T Consensus 591 ----------------------------------~~~l~i~V~DtG~GI~~e~~~~lFepF~~~~~~~~~~~~GtGLGL~ 636 (924)
T PRK10841 591 ----------------------------------GDYLSFRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLA 636 (924)
T ss_pred ----------------------------------CCEEEEEEEEcCcCCCHHHHHHHhcccccCCCCCCCCCCCeehhHH
Confidence 1247899999999999999999999999988766667789999999
Q ss_pred HHHHHHHHcCCEEEEEEeCCCceEEEEEEecCCCCccccccCCCCCCcEEEEeecChhHHHHHHHHHHhccceeeeccch
Q 001044 726 IVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSEW 805 (1177)
Q Consensus 726 Ivk~IVe~~GG~I~v~S~~g~GT~f~~~Lpl~~~~~~~~~~~~~~~~~~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~ 805 (1177)
||++||++|||+|+++|.+|+||+|+|.||+...............+..+.+..........+..|+..+|.........
T Consensus 637 I~k~lv~~~gG~I~v~S~~g~Gt~F~i~LP~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~l~~~l~~~G~~v~~~~~~ 716 (924)
T PRK10841 637 ICEKLINMMDGDISVDSEPGMGSQFTIRIPLYGAQYPQKKGVEGLQGKRCWLAVRNASLEQFLETLLQRSGIQVQRYEGQ 716 (924)
T ss_pred HHHHHHHHCCCEEEEEEcCCCcEEEEEEEECCcccccccccCcccCCCEEEEEcCCHHHHHHHHHHHHHCCCeEEEcccc
Confidence 99999999999999999999999999999986443322222334455666666777777778888888888765432210
Q ss_pred hhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCceEEEEEecccccChhHHHHHhhhhhhhhccceee
Q 001044 806 HGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFA 885 (1177)
Q Consensus 806 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~ 885 (1177)
. ..+..+++.|.... ..... . ....
T Consensus 717 ~-----------------------------------------~~~~d~~i~d~~~~-~~~~~-----~--------~~~~ 741 (924)
T PRK10841 717 E-----------------------------------------PTPEDVLITDDPVQ-KKWQG-----R--------AVIT 741 (924)
T ss_pred c-----------------------------------------CCcCcEEEEcCccc-cccch-----h--------hhhh
Confidence 0 00011222221100 00000 0 0000
Q ss_pred eeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHhcccccccccccccCCCCCCcccccccccccccchhhcc
Q 001044 886 WVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGEEIRGSIANYSASKHQKFR 965 (1177)
Q Consensus 886 ~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 965 (1177)
+...+... + ..........+|.....+...+.........
T Consensus 742 ~~~~~~~~-~-----~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~---------------------------------- 781 (924)
T PRK10841 742 FCRRHIGI-P-----LEIAPGEWVHSTATPHELPALLARIYRIELE---------------------------------- 781 (924)
T ss_pred hhhccccC-h-----hhcccCceeeccCChHHHHHHHHHHhhcccc----------------------------------
Confidence 00000000 0 0000011122233332222222221110000
Q ss_pred ccccccccCCCCCCCchhhhhhhhhhhhccccCCCCCCCCCCCCCCCcchhhccCCcEEEEEecChHHHHHHHHHHhhcC
Q 001044 966 KCSFEFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVG 1045 (1177)
Q Consensus 966 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ILIVdD~~~~~~~l~~~L~~~G 1045 (1177)
.+. .. ..............+++||||||++.++..+..+|++.|
T Consensus 782 ---------~~~----------------------~~-----~~~~~~~~~~~~~~~~~ILvVdD~~~~~~~l~~~L~~~G 825 (924)
T PRK10841 782 ---------SDD----------------------SA-----NALPSTDKAVSDNDDMMILVVDDHPINRRLLADQLGSLG 825 (924)
T ss_pred ---------ccc----------------------cc-----ccccccccccccCCCCEEEEECCCHHHHHHHHHHHHHcC
Confidence 000 00 000000000111246799999999999999999999999
Q ss_pred CEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceE
Q 001044 1046 ATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIV 1125 (1177)
Q Consensus 1046 ~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~mdG~e~~r~IR~~~~~~~~~~ipII 1125 (1177)
|.|..+.||.+|++.+.. .+||+||||++||+|||+|++++||+.. ..+|||
T Consensus 826 ~~v~~a~~g~eal~~l~~-----------------------~~~DlVl~D~~mP~mdG~el~~~ir~~~-----~~~pII 877 (924)
T PRK10841 826 YQCKTANDGVDALNVLSK-----------------------NHIDIVLTDVNMPNMDGYRLTQRLRQLG-----LTLPVI 877 (924)
T ss_pred CEEEEECCHHHHHHHHHh-----------------------CCCCEEEEcCCCCCCCHHHHHHHHHhcC-----CCCCEE
Confidence 999999999999999863 4799999999999999999999999853 358999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1126 ALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1126 alTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
++|++...++..+|+++||++||.||++.++|...|.++....
T Consensus 878 ~lTa~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~~~~~ 920 (924)
T PRK10841 878 GVTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYAERV 920 (924)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998887544
No 2
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=100.00 E-value=1.5e-57 Score=592.63 Aligned_cols=503 Identities=31% Similarity=0.463 Sum_probs=397.0
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccc
Q 001044 486 RKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELE 565 (1177)
Q Consensus 486 ~~ae~~~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~l~ 565 (1177)
++++++++.|++|++++||||||||++|+|+++++... ..++++++++..|.+++.+|..+|+++++++|+|.+++.++
T Consensus 284 ~~~~~~~~~~~~~l~~isHelrtPL~~i~~~~~~l~~~-~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~~ 362 (919)
T PRK11107 284 KRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKT-PLTPTQRDYLQTIERSANNLLAIINDILDFSKLEAGKLVLE 362 (919)
T ss_pred HHHHHHHHHHHHHHHHhhHhhcccHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 34556677789999999999999999999999988644 46778889999999999999999999999999999999999
Q ss_pred ceeccHHHHHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccCCCeEEEEeeccccCCCC
Q 001044 566 NTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSK 645 (1177)
Q Consensus 566 ~~~~dL~~li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~ 645 (1177)
..+|++.+++++++..+...+..|++.+.++++++.|..+.+|+.+|+|||.|||+||+|||+.|.|.+.+....
T Consensus 363 ~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~vl~NLl~NAik~~~~g~v~i~v~~~~----- 437 (919)
T PRK11107 363 NIPFSLRETLDEVVTLLAHSAHEKGLELTLNIDPDVPDNVIGDPLRLQQIITNLVGNAIKFTESGNIDILVELRA----- 437 (919)
T ss_pred EeecCHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhcCCCCcEEEEEEEEe-----
Confidence 999999999999999999999999999999988887777999999999999999999999999998877653221
Q ss_pred CCCcCCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHH
Q 001044 646 NTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLS 725 (1177)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLa 725 (1177)
..++...+.|+|.|+|+|||++.++++|+|||+++.+.+++.+|+||||+
T Consensus 438 ------------------------------~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GLGL~ 487 (919)
T PRK11107 438 ------------------------------LSNTKVQLEVQIRDTGIGISERQQSQLFQAFRQADASISRRHGGTGLGLV 487 (919)
T ss_pred ------------------------------cCCCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCCCCCCCCCCCcchhHH
Confidence 11223458899999999999999999999999999888888899999999
Q ss_pred HHHHHHHHcCCEEEEEEeCCCceEEEEEEecCCCCcccc--ccCCCCCCcEEEEeecChhHHHHHHHHHHhccceeeecc
Q 001044 726 IVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQ--IYDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETS 803 (1177)
Q Consensus 726 Ivk~IVe~~GG~I~v~S~~g~GT~f~~~Lpl~~~~~~~~--~~~~~~~~~~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~ 803 (1177)
|||++++.|||+|+++|.+|+||+|+|+||+........ .....+.+..+++.+.+...+..+..++...|.......
T Consensus 488 i~~~i~~~~gG~i~v~s~~~~Gt~f~i~lp~~~~~~~~~~~~~~~~~~g~~ili~d~~~~~~~~l~~~L~~~g~~v~~~~ 567 (919)
T PRK11107 488 ITQKLVNEMGGDISFHSQPNRGSTFWFHLPLDLNPNPIIDGLPTDCLAGKRLLYVEPNSAAAQATLDILSETPLEVTYSP 567 (919)
T ss_pred HHHHHHHHhCCEEEEEecCCCCEEEEEEEEeccCCccccccCCccccCCCeEEEEeCCHHHHHHHHHHHHHCCCEEEEcC
Confidence 999999999999999999999999999999865432211 112234567788888999999999999999888766544
Q ss_pred chhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCceEEEEEecccccChhH-HHHHhhhhhhhhccc
Q 001044 804 EWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLDLSSDL-WREQLNSLDIFHRKA 882 (1177)
Q Consensus 804 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~id~~l~d~~~~~-~~e~~~~~~~~~~~~ 882 (1177)
....+ ...++.++++|..+.+..+.. ..+..+.. ....
T Consensus 568 ~~~~l--------------------------------------~~~~~d~il~~~~~~~~~~~~~~~~~~~~~---~~~~ 606 (919)
T PRK11107 568 TLSQL--------------------------------------PEAHYDILLLGLPVTFREPLTMLHERLAKA---KSMT 606 (919)
T ss_pred CHHHh--------------------------------------ccCCCCEEEecccCCCCCCHHHHHHHHHhh---hhcC
Confidence 32210 012345666676666544322 22222211 1111
Q ss_pred eeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHhcccccccccccccCCCCCCcccccccccccccchh
Q 001044 883 MFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGEEIRGSIANYSASKHQ 962 (1177)
Q Consensus 883 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 962 (1177)
....+..............+.|...++.||+....+...+........
T Consensus 607 ~~~i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~-------------------------------- 654 (919)
T PRK11107 607 DFLILALPCHEQVLAEQLKQDGADACLSKPLSHTRLLPALLEPCHHKQ-------------------------------- 654 (919)
T ss_pred CcEEEEeCCcchhhHHHHhhCCCceEECCCCCHHHHHHHHHHhhcccc--------------------------------
Confidence 112222222223334455667788889999999888776654221000
Q ss_pred hccccccccccCCCCCCCchhhhhhhhhhhhccccCCCCCCCCCCCCCCCcchhhccCCcEEEEEecChHHHHHHHHHHh
Q 001044 963 KFRKCSFEFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILE 1042 (1177)
Q Consensus 963 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ILIVdD~~~~~~~l~~~L~ 1042 (1177)
+ .. .........+++||||||++.++..++.+|+
T Consensus 655 -------------~-~~--------------------------------~~~~~~~~~~~~vLivdd~~~~~~~l~~~L~ 688 (919)
T PRK11107 655 -------------P-PL--------------------------------LPPTDESRLPLTVMAVDDNPANLKLIGALLE 688 (919)
T ss_pred -------------c-cc--------------------------------ccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 0 00 0000011234699999999999999999999
Q ss_pred hcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCc
Q 001044 1043 KVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNI 1122 (1177)
Q Consensus 1043 ~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~mdG~e~~r~IR~~~~~~~~~~i 1122 (1177)
..|+.|..+.+|++|++.+.. .+||+||||+.||+|||+++++.||+... ..++
T Consensus 689 ~~~~~v~~~~~~~~al~~~~~-----------------------~~~dlil~D~~mp~~~g~~~~~~lr~~~~---~~~~ 742 (919)
T PRK11107 689 EQVEHVVLCDSGHQAVEQAKQ-----------------------RPFDLILMDIQMPGMDGIRACELIRQLPH---NQNT 742 (919)
T ss_pred HcCCEEEEECCHHHHHHHHHh-----------------------CCCCEEEEeCCCCCCcHHHHHHHHHhccc---CCCC
Confidence 999999999999999998853 47999999999999999999999998643 2469
Q ss_pred ceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCC
Q 001044 1123 PIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1169 (1177)
Q Consensus 1123 pIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~~ 1169 (1177)
|||++|++...+...+|+++||++||.||++.++|...|.+++....
T Consensus 743 pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~~ 789 (919)
T PRK11107 743 PIIAVTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRYKPGPK 789 (919)
T ss_pred CEEEEeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHccccc
Confidence 99999999999999999999999999999999999999999876543
No 3
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=100.00 E-value=3.1e-56 Score=580.52 Aligned_cols=424 Identities=31% Similarity=0.488 Sum_probs=324.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccc
Q 001044 485 RRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMEL 564 (1177)
Q Consensus 485 ~~~ae~~~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~l 564 (1177)
+++++..++.|.+|++++||||||||++|+|++++|.. ...++++++.+..|..++.+|..+++++|+++|+|.+++.+
T Consensus 388 ~~~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~-~~~~~~~~~~~~~i~~~~~~l~~li~~ll~~~~~~~~~~~~ 466 (921)
T PRK15347 388 KQRAEQANKRKSEHLTTISHEIRTPLNGVLGALELLQN-TPLTAEQMDLADTARQCTLSLLAIINNLLDFSRIESGQMTL 466 (921)
T ss_pred HHHHHHHHHHHHHHHHHhHHHhchhHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 34456667788999999999999999999999999864 44678888999999999999999999999999999999999
Q ss_pred cceeccHHHHHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccCCCeEEEEeeccccCCC
Q 001044 565 ENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTS 644 (1177)
Q Consensus 565 ~~~~~dL~~li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~ 644 (1177)
+.+++++.+++++++..+...+..+++.+.+.++++.|..+.+|+.+|+|||.|||+||+|||+.|.|.|++...
T Consensus 467 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~g~I~i~~~~~----- 541 (921)
T PRK15347 467 SLEETALLPLLDQAMLTIQGPAQSKSLTLRTFVGAHVPLYLHLDSLRLRQILVNLLGNAVKFTETGGIRLRVKRH----- 541 (921)
T ss_pred eecccCHHHHHHHHHHHHHHHHHHCCcEEEEEECCCCCceEEECHHHHHHHHHHHHHHHhhcCCCCCEEEEEEEc-----
Confidence 999999999999999999999999999999888888887899999999999999999999999999988765321
Q ss_pred CCCCcCCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhH
Q 001044 645 KNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGL 724 (1177)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGL 724 (1177)
...+.|+|.|||+||+++.+++||+||+|.+. ..+|+||||
T Consensus 542 -----------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~----~~~g~GLGL 582 (921)
T PRK15347 542 -----------------------------------EQQLCFTVEDTGCGIDIQQQQQIFTPFYQADT----HSQGTGLGL 582 (921)
T ss_pred -----------------------------------CCEEEEEEEEcCCCCCHHHHHHHhcCcccCCC----CCCCCchHH
Confidence 12478999999999999999999999998764 246999999
Q ss_pred HHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCCCCccccccCCCCCCcEEEEeecChhHHHHHHHHHHhccceeeeccc
Q 001044 725 SIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSE 804 (1177)
Q Consensus 725 aIvk~IVe~~GG~I~v~S~~g~GT~f~~~Lpl~~~~~~~~~~~~~~~~~~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~ 804 (1177)
+||+++++.|||+|+++|++|+||+|+|.||+........ ..+.. ........++..+|........
T Consensus 583 ~i~~~~~~~~gG~i~i~s~~~~Gt~f~i~lp~~~~~~~~~-----~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 649 (921)
T PRK15347 583 TIASSLAKMMGGELTLFSTPGVGSCFSLVLPLNEYAPPEP-----LKGEL--------SAPLALHRQLSAWGITCQPGHQ 649 (921)
T ss_pred HHHHHHHHHcCCEEEEEecCCCceEEEEEEECCCCCCccc-----ccccc--------cchHHHHHHHHHcCCccccccc
Confidence 9999999999999999999999999999999854211100 00000 0000111111111111000000
Q ss_pred hhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCceEEEEEecccccChhHHHHHhhhhhhhhcccee
Q 001044 805 WHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMF 884 (1177)
Q Consensus 805 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~ 884 (1177)
. .. .
T Consensus 650 ~-----------------------------~~------------------------------~----------------- 653 (921)
T PRK15347 650 N-----------------------------PA------------------------------L----------------- 653 (921)
T ss_pred c-----------------------------hh------------------------------h-----------------
Confidence 0 00 0
Q ss_pred eeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHhcccccccccccccCCCCCCcccccccccccccchhhc
Q 001044 885 AWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGEEIRGSIANYSASKHQKF 964 (1177)
Q Consensus 885 ~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 964 (1177)
. ..+ .+..+.++...+.......
T Consensus 654 --------~---~~~-----------~~~~~~~~~~~~~~~~~~~----------------------------------- 676 (921)
T PRK15347 654 --------L---DPE-----------LAYLPGRLYDLLQQIIQGA----------------------------------- 676 (921)
T ss_pred --------c---chh-----------hhhcchHHHHHHHHHhhcC-----------------------------------
Confidence 0 000 0000011111111000000
Q ss_pred cccccccccCCCCCCCchhhhhhhhhhhhccccCCCCCCCCCCCCCCCcchhhccCCcEEEEEecChHHHHHHHHHHhhc
Q 001044 965 RKCSFEFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKV 1044 (1177)
Q Consensus 965 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ILIVdD~~~~~~~l~~~L~~~ 1044 (1177)
+. .+.. .......+++||||||++.++..+..+|+..
T Consensus 677 -----------~~--------------------------~~~~------~~~~~~~~~~iLivdd~~~~~~~l~~~L~~~ 713 (921)
T PRK15347 677 -----------PN--------------------------EPVI------NLPLQPWQLQILLVDDVETNRDIIGMMLVEL 713 (921)
T ss_pred -----------CC--------------------------cccc------cCCCCcccCCEEEEeCCHHHHHHHHHHHHHc
Confidence 00 0000 0000123468999999999999999999999
Q ss_pred CCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcce
Q 001044 1045 GATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPI 1124 (1177)
Q Consensus 1045 G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~mdG~e~~r~IR~~~~~~~~~~ipI 1124 (1177)
|++|..|.||++|++.+.. .+||+||||++||+|||++++++||+.+.. ..+++||
T Consensus 714 g~~v~~a~~~~~al~~~~~-----------------------~~~dlil~D~~mp~~~G~~~~~~ir~~~~~-~~~~~pi 769 (921)
T PRK15347 714 GQQVTTAASGTEALELGRQ-----------------------HRFDLVLMDIRMPGLDGLETTQLWRDDPNN-LDPDCMI 769 (921)
T ss_pred CCEEEEECCHHHHHHHHhc-----------------------CCCCEEEEeCCCCCCCHHHHHHHHHhchhh-cCCCCcE
Confidence 9999999999999998853 479999999999999999999999975432 1256999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001044 1125 VALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1166 (1177)
Q Consensus 1125 IalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~ 1166 (1177)
|++|++...+...+|+++||++||.||++.++|..++.++..
T Consensus 770 i~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 811 (921)
T PRK15347 770 VALTANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALELAAE 811 (921)
T ss_pred EEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999987754
No 4
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=100.00 E-value=8.6e-53 Score=551.03 Aligned_cols=369 Identities=34% Similarity=0.570 Sum_probs=320.6
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccc
Q 001044 486 RKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELE 565 (1177)
Q Consensus 486 ~~ae~~~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~l~ 565 (1177)
++++++++.|++|+++|||||||||++|.|++++|.. ...++++++++..|.+++.+|..+++++|+++|+|.+++.++
T Consensus 455 ~~~~~~~~~~~~~~~~~sHelrtPL~~i~~~~~ll~~-~~~~~~~~~~l~~i~~~~~~l~~~i~~ll~~~~~e~~~~~~~ 533 (968)
T TIGR02956 455 AEAEEANRAKSAFLATMSHEIRTPLNGILGTLELLGD-TGLTSQQQQYLQVINRSGESLLDILNDILDYSKIEAGHLSIS 533 (968)
T ss_pred HHHHHHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeee
Confidence 3456677789999999999999999999999999864 446788889999999999999999999999999999999999
Q ss_pred ceeccHHHHHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccCCCeEEEEeeccccCCCC
Q 001044 566 NTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSK 645 (1177)
Q Consensus 566 ~~~~dL~~li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~ 645 (1177)
.++|++.+++++++..+...+..+++.+.++++++.|..+.+|+.+|+|||.|||+||+||++.|.|.|.+....
T Consensus 534 ~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLi~NAik~~~~g~i~i~~~~~~----- 608 (968)
T TIGR02956 534 PRPFDLNALLDDVHHLMVSRAQLKGIQLRLNIPEQLPNWWQGDGPRIRQVLINLVGNAIKFTDRGSVVLRVSLND----- 608 (968)
T ss_pred ecccCHHHHHHHHHHHHHHHHHHcCcEEEEEeCCCCCceEeeCHHHHHHHHHHHHHHHHhhCCCCeEEEEEEEcC-----
Confidence 999999999999999999999999999999988777878999999999999999999999999999887653210
Q ss_pred CCCcCCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHH
Q 001044 646 NTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLS 725 (1177)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLa 725 (1177)
...+.|+|.|+|+|||++++++||+|||+.+ ..+..+|+||||+
T Consensus 609 ----------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~--~~~~~~g~GLGL~ 652 (968)
T TIGR02956 609 ----------------------------------DSSLLFEVEDTGCGIAEEEQATLFDAFTQAD--GRRRSGGTGLGLA 652 (968)
T ss_pred ----------------------------------CCeEEEEEEeCCCCCCHHHHHHHHhhhhccC--CCCCCCCccHHHH
Confidence 1117899999999999999999999999988 3455689999999
Q ss_pred HHHHHHHHcCCEEEEEEeCCCceEEEEEEecCCCCccccccCCCCCCcEEEEeecChhHHHHHHHHHHhccceeeeccch
Q 001044 726 IVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSEW 805 (1177)
Q Consensus 726 Ivk~IVe~~GG~I~v~S~~g~GT~f~~~Lpl~~~~~~~~~~~~~~~~~~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~ 805 (1177)
|||++++.|||+|.++|.+|+||+|+|.||+........
T Consensus 653 i~~~l~~~~gG~i~~~s~~~~Gt~f~~~lp~~~~~~~~~----------------------------------------- 691 (968)
T TIGR02956 653 ISQRLVEAMDGELGVESELGVGSCFWFTLPLTRGKPAED----------------------------------------- 691 (968)
T ss_pred HHHHHHHHcCCEEEEEecCCCcEEEEEEEEcCCCCcccc-----------------------------------------
Confidence 999999999999999999999999999999743110000
Q ss_pred hhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCceEEEEEecccccChhHHHHHhhhhhhhhccceee
Q 001044 806 HGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFA 885 (1177)
Q Consensus 806 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~ 885 (1177)
.
T Consensus 692 ---------------~---------------------------------------------------------------- 692 (968)
T TIGR02956 692 ---------------S---------------------------------------------------------------- 692 (968)
T ss_pred ---------------c----------------------------------------------------------------
Confidence 0
Q ss_pred eeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHhcccccccccccccCCCCCCcccccccccccccchhhcc
Q 001044 886 WVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGEEIRGSIANYSASKHQKFR 965 (1177)
Q Consensus 886 ~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 965 (1177)
.. .
T Consensus 693 -----~~---------------------------------~--------------------------------------- 695 (968)
T TIGR02956 693 -----AT---------------------------------L--------------------------------------- 695 (968)
T ss_pred -----cc---------------------------------c---------------------------------------
Confidence 00 0
Q ss_pred ccccccccCCCCCCCchhhhhhhhhhhhccccCCCCCCCCCCCCCCCcchhhccCCcEEEEEecChHHHHHHHHHHhhcC
Q 001044 966 KCSFEFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVG 1045 (1177)
Q Consensus 966 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ILIVdD~~~~~~~l~~~L~~~G 1045 (1177)
......+.+||||||++.++..+..+|+..|
T Consensus 696 -------------------------------------------------~~~~~~~~~iLvvdd~~~~~~~l~~~L~~~g 726 (968)
T TIGR02956 696 -------------------------------------------------TVIDLPPQRVLLVEDNEVNQMVAQGFLTRLG 726 (968)
T ss_pred -------------------------------------------------ccccccccceEEEcCcHHHHHHHHHHHHHcC
Confidence 0000123489999999999999999999999
Q ss_pred CEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceE
Q 001044 1046 ATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIV 1125 (1177)
Q Consensus 1046 ~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~mdG~e~~r~IR~~~~~~~~~~ipII 1125 (1177)
|.|..+.||.+|++.+.. .+||+||||++||+|||+++++.||+..... .++|||
T Consensus 727 ~~v~~~~~~~~a~~~l~~-----------------------~~~dlvl~D~~mp~~~g~~~~~~ir~~~~~~--~~~pii 781 (968)
T TIGR02956 727 HKVTLAESGQSALECFHQ-----------------------HAFDLALLDINLPDGDGVTLLQQLRAIYGAK--NEVKFI 781 (968)
T ss_pred CEEEEECCHHHHHHHHHC-----------------------CCCCEEEECCCCCCCCHHHHHHHHHhCcccc--CCCeEE
Confidence 999999999999999853 4799999999999999999999999864321 228999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001044 1126 ALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1167 (1177)
Q Consensus 1126 alTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~ 1167 (1177)
++|++...+...+|+++||++||.||++.++|...|.+++..
T Consensus 782 ~lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 823 (968)
T TIGR02956 782 AFSAHVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMIAVILAG 823 (968)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999998854
No 5
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=100.00 E-value=5.4e-52 Score=531.54 Aligned_cols=369 Identities=33% Similarity=0.528 Sum_probs=316.8
Q ss_pred HHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccce
Q 001044 488 AEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENT 567 (1177)
Q Consensus 488 ae~~~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~l~~~ 567 (1177)
.+++++.|++|+++|||||||||++|.|+++++.. ...++++++++..|..++.+|..+++++++++|++.+++.++.+
T Consensus 276 l~~a~~~~~~~~a~isHelrtPL~~I~g~~~ll~~-~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~~~~ 354 (779)
T PRK11091 276 LEKASRDKTTFISTISHELRTPLNGIVGLSRILLD-TELTAEQRKYLKTIHVSAITLGNIFNDIIDMDKMERRKLQLDNQ 354 (779)
T ss_pred HHHHHHHHHHHHHHhhHhhcCcHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCcEEEee
Confidence 34455678899999999999999999999999864 44677888899999999999999999999999999999999999
Q ss_pred eccHHHHHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccCCCeEEEEeeccccCCCCCC
Q 001044 568 EFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNT 647 (1177)
Q Consensus 568 ~~dL~~li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~~~ 647 (1177)
++++.++++++...+...+..+++.+.++.+++.|..+.+|+.+|+|||.|||+||+||+++|.|.+.+...
T Consensus 355 ~~~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~g~v~i~~~~~-------- 426 (779)
T PRK11091 355 PIDFTDFLADLENLSGLQAEQKGLRFDLEPLLPLPHKVITDGTRLRQILWNLISNAVKFTQQGGVTVRVRYE-------- 426 (779)
T ss_pred ccCHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHHHhCCCCcEEEEEEEc--------
Confidence 999999999999999999999999999998877777799999999999999999999999999888765321
Q ss_pred CcCCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccC-CCCCCCCCCccchhHHH
Q 001044 648 AEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQG-DPSTTRKHGGTGLGLSI 726 (1177)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~-d~s~~~~~~GtGLGLaI 726 (1177)
....+.|+|.|+|+|||++.+++||+|||+. +.+.++..+|+||||+|
T Consensus 427 -------------------------------~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~~~~~~~GtGLGL~i 475 (779)
T PRK11091 427 -------------------------------EGDMLTFEVEDSGIGIPEDELDKIFAMYYQVKDSHGGKPATGTGIGLAV 475 (779)
T ss_pred -------------------------------cCCEEEEEEEecCCCCCHHHHHHHHHHhhcccCCCCCCCCCCcchHHHH
Confidence 0123789999999999999999999999998 55555667899999999
Q ss_pred HHHHHHHcCCEEEEEEeCCCceEEEEEEecCCCCccccccCCCCCCcEEEEeecChhHHHHHHHHHHhccceeeeccchh
Q 001044 727 VRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWH 806 (1177)
Q Consensus 727 vk~IVe~~GG~I~v~S~~g~GT~f~~~Lpl~~~~~~~~~~~~~~~~~~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~ 806 (1177)
||+||+.|||+|+++|.+|+||+|+|+||+........
T Consensus 476 ~~~iv~~~gG~i~v~s~~g~Gt~f~i~lP~~~~~~~~~------------------------------------------ 513 (779)
T PRK11091 476 SKRLAQAMGGDITVTSEEGKGSCFTLTIHAPAVAEEVE------------------------------------------ 513 (779)
T ss_pred HHHHHHHcCCEEEEEecCCCeEEEEEEEeccccccccc------------------------------------------
Confidence 99999999999999999999999999999743110000
Q ss_pred hhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCceEEEEEecccccChhHHHHHhhhhhhhhccceeee
Q 001044 807 GLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAW 886 (1177)
Q Consensus 807 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~ 886 (1177)
T Consensus 514 -------------------------------------------------------------------------------- 513 (779)
T PRK11091 514 -------------------------------------------------------------------------------- 513 (779)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHhcccccccccccccCCCCCCcccccccccccccchhhccc
Q 001044 887 VVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGEEIRGSIANYSASKHQKFRK 966 (1177)
Q Consensus 887 ~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 966 (1177)
.. + .
T Consensus 514 -----~~------------------~---------------------~-------------------------------- 517 (779)
T PRK11091 514 -----DA------------------F---------------------D-------------------------------- 517 (779)
T ss_pred -----cc------------------c---------------------c--------------------------------
Confidence 00 0 0
Q ss_pred cccccccCCCCCCCchhhhhhhhhhhhccccCCCCCCCCCCCCCCCcchhhccCCcEEEEEecChHHHHHHHHHHhhcCC
Q 001044 967 CSFEFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGA 1046 (1177)
Q Consensus 967 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ILIVdD~~~~~~~l~~~L~~~G~ 1046 (1177)
.......+.+||||||++.++..+..+|+..|+
T Consensus 518 -----------------------------------------------~~~~~~~~~~ILivdD~~~~~~~l~~~L~~~g~ 550 (779)
T PRK11091 518 -----------------------------------------------EDDMPLPALNILLVEDIELNVIVARSVLEKLGN 550 (779)
T ss_pred -----------------------------------------------cccccccccceEEEcCCHHHHHHHHHHHHHcCC
Confidence 000001246899999999999999999999999
Q ss_pred EEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCC-cceE
Q 001044 1047 TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARN-IPIV 1125 (1177)
Q Consensus 1047 ~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~mdG~e~~r~IR~~~~~~~~~~-ipII 1125 (1177)
.|..+.||++|++.+.. .+||+||||+.||+|||++++++||+..+. .+ +|||
T Consensus 551 ~v~~a~~~~eal~~~~~-----------------------~~~Dlvl~D~~mp~~~G~e~~~~ir~~~~~---~~~~~ii 604 (779)
T PRK11091 551 SVDVAMTGKEALEMFDP-----------------------DEYDLVLLDIQLPDMTGLDIARELRERYPR---EDLPPLV 604 (779)
T ss_pred EEEEECCHHHHHHHhhc-----------------------CCCCEEEEcCCCCCCCHHHHHHHHHhcccc---CCCCcEE
Confidence 99999999999998852 479999999999999999999999976421 34 4999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1126 ALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1126 alTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
++|++... +..+|+++||++||.||++.++|..+|.+++...
T Consensus 605 ~~ta~~~~-~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~ 646 (779)
T PRK11091 605 ALTANVLK-DKKEYLDAGMDDVLSKPLSVPALTAMIKKFWDTQ 646 (779)
T ss_pred EEECCchH-hHHHHHHCCCCEEEECCCCHHHHHHHHHHHhccc
Confidence 99998764 4678999999999999999999999999998544
No 6
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=100.00 E-value=7.5e-51 Score=529.71 Aligned_cols=364 Identities=32% Similarity=0.538 Sum_probs=314.3
Q ss_pred HHHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--ccc
Q 001044 487 KAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGK--MEL 564 (1177)
Q Consensus 487 ~ae~~~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~--l~l 564 (1177)
++++..+.|.+|+++|||||||||++|.|++++|... ..++++++++..|..++.+|..++++++++++++.|. +.+
T Consensus 436 ~~~~~~~~~~~~l~~isHelrtPL~~i~~~~~ll~~~-~~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~~~~~~~~~~ 514 (914)
T PRK11466 436 EAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADN-PALNAQRDDLRAITDSGESLLTILNDILDYSAIEAGGKNVSV 514 (914)
T ss_pred HHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccee
Confidence 3455667889999999999999999999999998644 4567888899999999999999999999999999884 567
Q ss_pred cceeccHHHHHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccCCCeEEEEeeccccCCC
Q 001044 565 ENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTS 644 (1177)
Q Consensus 565 ~~~~~dL~~li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~ 644 (1177)
+.++|++.+++++++..+...+..+++.+.++++++.|..+.+|+.+|+|||.|||+||+||++.|.|.|.+...
T Consensus 515 ~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qil~NLl~NAik~~~~g~I~i~~~~~----- 589 (914)
T PRK11466 515 SDEPFEPRPLLESTLQLMSGRVKGRPIRLATDIADDLPTALMGDPRRIRQVITNLLSNALRFTDEGSIVLRSRTD----- 589 (914)
T ss_pred cccccCHHHHHHHHHHHHHHHHHhCCcEEEEEeCCCCCceEEECHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEc-----
Confidence 778999999999999999999999999999998877777899999999999999999999999999888765321
Q ss_pred CCCCcCCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhH
Q 001044 645 KNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGL 724 (1177)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGL 724 (1177)
...+.|+|.|+|+|||++.++++|+||++.+. +.+|+||||
T Consensus 590 -----------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~----~~~g~GLGL 630 (914)
T PRK11466 590 -----------------------------------GEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSG----KRGGTGLGL 630 (914)
T ss_pred -----------------------------------CCEEEEEEEECCCCCCHHHHHHHhchhhcCCC----CCCCCcccH
Confidence 12477999999999999999999999998642 357999999
Q ss_pred HHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCCCCccccccCCCCCCcEEEEeecChhHHHHHHHHHHhccceeeeccc
Q 001044 725 SIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSE 804 (1177)
Q Consensus 725 aIvk~IVe~~GG~I~v~S~~g~GT~f~~~Lpl~~~~~~~~~~~~~~~~~~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~ 804 (1177)
+||+++++.|||+|.++|.+|+||+|+|.||+........
T Consensus 631 ~i~~~l~~~~gG~i~v~s~~~~Gt~f~i~lP~~~~~~~~~---------------------------------------- 670 (914)
T PRK11466 631 TISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVP---------------------------------------- 670 (914)
T ss_pred HHHHHHHHHcCCEEEEEecCCCCeEEEEEEEccccccccc----------------------------------------
Confidence 9999999999999999999999999999999742100000
Q ss_pred hhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCceEEEEEecccccChhHHHHHhhhhhhhhcccee
Q 001044 805 WHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMF 884 (1177)
Q Consensus 805 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~ 884 (1177)
T Consensus 671 -------------------------------------------------------------------------------- 670 (914)
T PRK11466 671 -------------------------------------------------------------------------------- 670 (914)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHhcccccccccccccCCCCCCcccccccccccccchhhc
Q 001044 885 AWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGEEIRGSIANYSASKHQKF 964 (1177)
Q Consensus 885 ~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 964 (1177)
.. +
T Consensus 671 ------~~-------------------~---------------------------------------------------- 673 (914)
T PRK11466 671 ------KT-------------------V---------------------------------------------------- 673 (914)
T ss_pred ------cc-------------------c----------------------------------------------------
Confidence 00 0
Q ss_pred cccccccccCCCCCCCchhhhhhhhhhhhccccCCCCCCCCCCCCCCCcchhhccCCcEEEEEecChHHHHHHHHHHhhc
Q 001044 965 RKCSFEFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKV 1044 (1177)
Q Consensus 965 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ILIVdD~~~~~~~l~~~L~~~ 1044 (1177)
.......+++||||||++.++..+..+|+..
T Consensus 674 -------------------------------------------------~~~~~~~~~~vLivdD~~~~~~~l~~~L~~~ 704 (914)
T PRK11466 674 -------------------------------------------------NQAVRLDGLRLLLIEDNPLTQRITAEMLNTS 704 (914)
T ss_pred -------------------------------------------------ccccccCCcceEEEeCCHHHHHHHHHHHHhc
Confidence 0000012468999999999999999999999
Q ss_pred CCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcce
Q 001044 1045 GATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPI 1124 (1177)
Q Consensus 1045 G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~mdG~e~~r~IR~~~~~~~~~~ipI 1124 (1177)
|+.|..+.+|.+|++.+.. ..+||+||||++||+|||++++++||+.. +++||
T Consensus 705 g~~v~~a~~~~~al~~~~~----------------------~~~~Dlvl~D~~mp~~~G~~~~~~lr~~~-----~~~~i 757 (914)
T PRK11466 705 GAQVVAVGNAAQALETLQN----------------------SEPFAAALVDFDLPDYDGITLARQLAQQY-----PSLVL 757 (914)
T ss_pred CCceEEeCCHHHHHHHHHc----------------------CCCCCEEEEeCCCCCCCHHHHHHHHHhhC-----CCCCE
Confidence 9999999999999998852 24799999999999999999999999742 46999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1125 VALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1125 IalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
|++|++...+...+|+++|+++||.||++.++|...|.++++..
T Consensus 758 i~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 801 (914)
T PRK11466 758 IGFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQLQ 801 (914)
T ss_pred EEEeCCCchhhHHHHHhcCcCCEEeCCCCHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999988654
No 7
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=100.00 E-value=6.6e-47 Score=505.63 Aligned_cols=374 Identities=29% Similarity=0.490 Sum_probs=309.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccc
Q 001044 485 RRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMEL 564 (1177)
Q Consensus 485 ~~~ae~~~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~l 564 (1177)
++++++.+..|.+|+++|||||||||++|.|++++|.......++..+.+..+..++.+|..+++++++++|++++...+
T Consensus 702 ~~~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~l~~li~~ll~~~~~~~~~~~~ 781 (1197)
T PRK09959 702 RNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSKEQRVEAISLAYATGQSLLGLIGEILDVDKIESGNYQL 781 (1197)
T ss_pred HHHHHHHHHHHHHHHHhcChhhCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcee
Confidence 44555667788999999999999999999999999865433334445678888999999999999999999999999999
Q ss_pred cceeccHHHHHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccCCCeEEEEeeccccCCC
Q 001044 565 ENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTS 644 (1177)
Q Consensus 565 ~~~~~dL~~li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~ 644 (1177)
..+++++.+++++++..+...+..+++.+.+..+...+..+.+|+.+|.|||.|||+||+||++.|.+.+.+....
T Consensus 782 ~~~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~g~i~i~~~~~~---- 857 (1197)
T PRK09959 782 QPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLGH---- 857 (1197)
T ss_pred eeeeeCHHHHHHHHHHHHHHHHHhcCcEEEEecCCCCceEEEECHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEee----
Confidence 9999999999999999999999999999887654333346899999999999999999999999987766542110
Q ss_pred CCCCcCCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhH
Q 001044 645 KNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGL 724 (1177)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGL 724 (1177)
..++...+.|+|.|+|+|||++.+++||+||++.+.. +..+|+||||
T Consensus 858 -------------------------------~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~--~~~~G~GLGL 904 (1197)
T PRK09959 858 -------------------------------IDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSAG--RQQTGSGLGL 904 (1197)
T ss_pred -------------------------------ecCCceEEEEEEEEcCCCCCHHHHHHhhccccccccC--CCCCCcCchH
Confidence 0122335789999999999999999999999987542 3457999999
Q ss_pred HHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCCCCccccccCCCCCCcEEEEeecChhHHHHHHHHHHhccceeeeccc
Q 001044 725 SIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSE 804 (1177)
Q Consensus 725 aIvk~IVe~~GG~I~v~S~~g~GT~f~~~Lpl~~~~~~~~~~~~~~~~~~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~ 804 (1177)
+|||+||+.|||+|+++|.+|+||+|+|.||+........ ..
T Consensus 905 ~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP~~~~~~~~~-------------------------------------~~- 946 (1197)
T PRK09959 905 MICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQVAT-------------------------------------VE- 946 (1197)
T ss_pred HHHHHHHHHcCCEEEEEeCCCCcEEEEEEEEccccchhcc-------------------------------------cc-
Confidence 9999999999999999999999999999999742100000 00
Q ss_pred hhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCceEEEEEecccccChhHHHHHhhhhhhhhcccee
Q 001044 805 WHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMF 884 (1177)
Q Consensus 805 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~ 884 (1177)
T Consensus 947 -------------------------------------------------------------------------------- 946 (1197)
T PRK09959 947 -------------------------------------------------------------------------------- 946 (1197)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHhcccccccccccccCCCCCCcccccccccccccchhhc
Q 001044 885 AWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGEEIRGSIANYSASKHQKF 964 (1177)
Q Consensus 885 ~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 964 (1177)
. .. . .
T Consensus 947 -------~---------------------------------~~----~-~------------------------------ 951 (1197)
T PRK09959 947 -------A---------------------------------KA----E-Q------------------------------ 951 (1197)
T ss_pred -------c---------------------------------cc----c-c------------------------------
Confidence 0 00 0 0
Q ss_pred cccccccccCCCCCCCchhhhhhhhhhhhccccCCCCCCCCCCCCCCCcchhhccCCcEEEEEecChHHHHHHHHHHhhc
Q 001044 965 RKCSFEFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKV 1044 (1177)
Q Consensus 965 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ILIVdD~~~~~~~l~~~L~~~ 1044 (1177)
+ .....+.+||||||++.++..+..+|+..
T Consensus 952 -----------~---------------------------------------~~~~~~~~iLivdd~~~~~~~l~~~L~~~ 981 (1197)
T PRK09959 952 -----------P---------------------------------------ITLPEKLSILIADDHPTNRLLLKRQLNLL 981 (1197)
T ss_pred -----------c---------------------------------------cccccCceEEEcCCCHHHHHHHHHHHHHc
Confidence 0 00011358999999999999999999999
Q ss_pred CCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcce
Q 001044 1045 GATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPI 1124 (1177)
Q Consensus 1045 G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~mdG~e~~r~IR~~~~~~~~~~ipI 1124 (1177)
|++|..+.+|.+|++.+.. .+||+||+|++||+|+|++++++||+.. +++||
T Consensus 982 g~~v~~~~~~~~al~~~~~-----------------------~~~dlil~D~~mp~~~g~~~~~~i~~~~-----~~~pi 1033 (1197)
T PRK09959 982 GYDVDEATDGVQALHKVSM-----------------------QHYDLLITDVNMPNMDGFELTRKLREQN-----SSLPI 1033 (1197)
T ss_pred CCEEEEECCHHHHHHHhhc-----------------------CCCCEEEEeCCCCCCCHHHHHHHHHhcC-----CCCCE
Confidence 9999999999999998853 4799999999999999999999999742 45899
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001044 1125 VALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1166 (1177)
Q Consensus 1125 IalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~ 1166 (1177)
|++|++.......+|+++||++||.||++.++|..+|.++..
T Consensus 1034 i~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 1075 (1197)
T PRK09959 1034 WGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLHQ 1075 (1197)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999987654
No 8
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-47 Score=480.99 Aligned_cols=579 Identities=32% Similarity=0.413 Sum_probs=357.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHhhhhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH
Q 001044 468 VSKEMKLRAELISHLDARRKAEASNNYKSQ--FLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALL 545 (1177)
Q Consensus 468 i~~~~~l~~el~~~l~a~~~ae~~~~~Ks~--Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~ 545 (1177)
+.+...++..+....+....++.+...+++ |+++++|||||||++ |+...+. +...+.+++.+......++..+.
T Consensus 192 ~~r~~~l~~~~~~~~~~~~~~e~~~~~~sq~~~~~~~sHeir~p~~~--~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~ 268 (786)
T KOG0519|consen 192 LDRHTILKTTLVELQKKLASDEAAVWSPSQKGFLATLSHEIRTPLNG--GMLGGLS-DTDLDSDQRLILNTDRVSAKSLL 268 (786)
T ss_pred hchhhhhhHHHHHHHHHhhcchhcccCccchhhcccccceeeccccc--CcceEEe-ccccchHHHHHHHHHhhhccccc
Confidence 344555555555555555666666677777 999999999999998 6655543 45577889999999999999999
Q ss_pred HHHHHHHHHHhhccCCccccceeccHHHHHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhh
Q 001044 546 RLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIK 625 (1177)
Q Consensus 546 ~LIndLLdlSkiEsg~l~l~~~~~dL~~li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIK 625 (1177)
.++++++|.+++++|.+++...+|++..+++.++..+...+..++..+....+.+.|..+.+|+.+++||+.|+++||+|
T Consensus 269 s~ln~i~d~~~v~~g~~~l~~~rf~l~~ll~~~~~~~~e~~~~~~~~l~~~~~~~~p~~v~~de~~~~qv~~n~v~naik 348 (786)
T KOG0519|consen 269 SLLNDILDLSKVESGKGELVAKRFDLRTLLNFVISLLSELSQAKYAILVLDLSSGVPRNVRGDEARLRQVIANLVSNAIK 348 (786)
T ss_pred hhHHHhhcccccccccceeeeeecchHhhhhhhhhhhHHHhhcCCeEEEEecCCCCcceeeccceeeeeeehhhccceec
Confidence 99999999999999999999999999999999999999999999999999998888999999999999999999999999
Q ss_pred ccCCCeEEEEeeccccCCCCCC--CcCCcccccccchhhhhhhhhhccccccc-C------CCceEEEEEEEeCCCCCCh
Q 001044 626 FTSSGHIIIRGWCENLDTSKNT--AEFPTDRKKFGRAFRTKLKQQANNAMNFR-E------DNKLALCFEVDDTGCGIDQ 696 (1177)
Q Consensus 626 fT~~G~v~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~l~i~V~DtG~GI~~ 696 (1177)
||..|++.++.++.......+. ..+....+..+......... ..+..... . .......+.+.|+|.||+.
T Consensus 349 ~t~~~~i~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~ 427 (786)
T KOG0519|consen 349 FTHAGHLEESVIAREELSESNDVLLRAKEEAHMAGKARIDFLQK-MSHAMRAPRHNIISLLSLLLQDIVLSPDSGLEIQT 427 (786)
T ss_pred ccccceEEEEEEeehhcchhhHHHHhhhhhhhhccchhhhHHHH-hccccccccccccccchhhHhheEeccCCceeEeh
Confidence 9999999988776543322211 11111222222111111100 00110000 0 0012345789999999999
Q ss_pred hhHhh-hhcccccCCCCCCCCCCccchhHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCCCCccccccCCCCCCcEE
Q 001044 697 SKWET-VFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVV 775 (1177)
Q Consensus 697 e~l~~-IFe~F~q~d~s~~~~~~GtGLGLaIvk~IVe~~GG~I~v~S~~g~GT~f~~~Lpl~~~~~~~~~~~~~~~~~~v 775 (1177)
+.... +|..|-+++.+.++.++|+|+|+.||+.++++|+|.+.+.+....|++|+|.+++.........
T Consensus 428 ~~~~~~~~~~~~q~~~~~~~~~~gt~~~~~i~~~l~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------- 497 (786)
T KOG0519|consen 428 VMRSSNVFTSLIQADPDITRLYGGTGLGESIVFSLVELMSGEISDISCISLGKTFSFTLDLLTNLPKSVV---------- 497 (786)
T ss_pred hhhhhhHHHHHhccccccccccCCCcccchhhccHHHHHHHHhhhhhhhccCceeeEEEEeccCCCccch----------
Confidence 99988 9999999999999999999999999999999999999999999999999999988643221110
Q ss_pred EEeecChhHHHHHHHHHHhccceeee-ccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCceEE
Q 001044 776 VLATVGSMERMIISQWLRKKKVSTLE-TSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVV 854 (1177)
Q Consensus 776 ~~~~~~~~~r~~~~~~l~~~g~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v 854 (1177)
....+ ..+....-.|..... ...+.. + .+.... ......
T Consensus 498 -----~~~~~-~~~~~~~~~G~~~~~~~~~~~~---------------------------~----~~~~~~---~~~~~~ 537 (786)
T KOG0519|consen 498 -----GDEKR-LFQIILDFNGMLALLIDTKLGR---------------------------E----QIFQVL---AELLGI 537 (786)
T ss_pred -----hhhhh-hhhhhhhhcchhhhhhccccCc---------------------------c----eeEEEE---ecccCc
Confidence 00000 001111111110000 000000 0 000000 000001
Q ss_pred EEEecccccChhHHHHHhhhhh-hh-hccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHhccccc
Q 001044 855 VIDIALLDLSSDLWREQLNSLD-IF-HRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGKILG 932 (1177)
Q Consensus 855 ~id~~l~d~~~~~~~e~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~~~~~ 932 (1177)
.+|+.. ++....|.......+ .. ..-....|..+....... .. ..+..+...... .........
T Consensus 538 ~vd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~---------~~~~~~~~~~~~---~~~~~~~~~ 603 (786)
T KOG0519|consen 538 SVDVSL-SLSLAFWFLDLSLSDLEVCKQIEDNEEGSNNGDISSS-NP---------LHKSLRDLTSKL---SSGSGLSLA 603 (786)
T ss_pred cccccc-cchhhhhhcccccccchheEEeeeccccccCCCcchh-hh---------hhhccccchhhc---ccccccccc
Confidence 112221 222222222111111 00 000000111110000000 00 000000000000 000000000
Q ss_pred ccccccccCCCCCCcccccccccccccchhhccccccccccCCCCCCCchhhhhhhhhhhhccccCCCCCCCCCCCCCCC
Q 001044 933 MQNRISSTTNEGNGEEIRGSIANYSASKHQKFRKCSFEFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSS 1012 (1177)
Q Consensus 933 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1012 (1177)
...... ...+. ...........+......+..+. ...........+........
T Consensus 604 ~~~~~~-~~~~~-~~~~~~~~~~~~~~~s~~~~~~~------------------------~~~~~~~~~~~~~~~e~~~~ 657 (786)
T KOG0519|consen 604 LCPENS-QLMEG-NIGLVPSSDGLPKSPSLCLEACL------------------------RVELNSMGSKLSGNPEKLAE 657 (786)
T ss_pred cchhhH-Hhhhc-ccccccccccCCccHHHHHHhhc------------------------cccccccccccCCCcccccC
Confidence 000000 00000 00000000000000000000000 00000000000000000111
Q ss_pred cchhhccCCcEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEE
Q 001044 1013 SNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLI 1092 (1177)
Q Consensus 1013 ~~~~~~~~g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLI 1092 (1177)
......+.|.+|||||||++||++++.+|+++|++++.+.+|.||+++++ ..+.||+|
T Consensus 658 ~~~~~~l~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~----------------------~~~~y~~i 715 (786)
T KOG0519|consen 658 PRDSKLLTGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLK----------------------PPHSYDVI 715 (786)
T ss_pred ccccccccCCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcC----------------------CCCcccEE
Confidence 11345578999999999999999999999999999999999999999995 24689999
Q ss_pred EEeCCCCCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001044 1093 LMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1166 (1177)
Q Consensus 1093 lmDi~MP~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~ 1166 (1177)
||||+||+|||||++++||+.+. .++|||||||++..+..++|+++|||+||.|||+.+.|...++++++
T Consensus 716 fmD~qMP~mDG~e~~~~irk~~~----~~~pIvAlTa~~~~~~~~~c~~~Gmd~yl~KP~~~~~l~~~l~~~~~ 785 (786)
T KOG0519|consen 716 FMDLQMPEMDGYEATREIRKKER----WHLPIVALTADADPSTEEECLEVGMDGYLSKPFTLEKLVKILREFLL 785 (786)
T ss_pred EEEcCCcccchHHHHHHHHHhhc----CCCCEEEEecCCcHHHHHHHHHhCCceEEcccccHHHHHHHHHHHhc
Confidence 99999999999999999999865 57999999999999999999999999999999999999999998874
No 9
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=100.00 E-value=1.8e-43 Score=450.17 Aligned_cols=234 Identities=21% Similarity=0.310 Sum_probs=207.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccc
Q 001044 485 RRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMEL 564 (1177)
Q Consensus 485 ~~~ae~~~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~l 564 (1177)
++++++.++.|++|+++|||||||||++|.|++++|... ..++++.+.+..|.+++.+|.++|+++++++|+|+|++.+
T Consensus 440 ~~~le~~~~~k~~fla~iSHELRtPL~aI~g~~elL~~~-~~~~~~~~~l~~I~~~~~~L~~lI~dILdlsrle~~~~~l 518 (894)
T PRK10618 440 QREYEKNQQARKAFLQNIGDELKQPLQSLAQLAAQLRQT-SDEEQQQPELDQLAEQSDVLVRLVDNIQLLNMLETQDWKP 518 (894)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence 445566678899999999999999999999999998643 3567788899999999999999999999999999999999
Q ss_pred cceeccHHHHHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccCCCeEEEEeeccccCCC
Q 001044 565 ENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTS 644 (1177)
Q Consensus 565 ~~~~~dL~~li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~ 644 (1177)
+.++|++.+++++++..+...+..|++.+.+.++...+..+.+|+.+|+|||.|||+||+|||+.|.|.|.+...
T Consensus 519 ~~~~~~L~~ll~~vl~~~~~~a~~k~i~l~~~~~~~~~~~v~~D~~~L~QVL~NLL~NAik~t~~G~I~I~v~~~----- 593 (894)
T PRK10618 519 EQELFSLQDLIDEVLPEVLPAIKRKGLQLLIHNHLKAEQLRIGDRDALRKILLLLLNYAITTTAYGKITLEVDQD----- 593 (894)
T ss_pred cceeECHHHHHHHHHHHHHHHHHHCCCEEEEEeCCCCCcEEEecHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEc-----
Confidence 999999999999999999999999999998887666566789999999999999999999999999888765321
Q ss_pred CCCCcCCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhH
Q 001044 645 KNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGL 724 (1177)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGL 724 (1177)
......+.|+|.|||+|||++.+++||+||++.+.. .+..+|+||||
T Consensus 594 --------------------------------~~~~~~l~I~V~DtG~GI~~e~l~~IFePF~t~~~~-~~~~~GtGLGL 640 (894)
T PRK10618 594 --------------------------------ESSPDRLTIRILDTGAGVSIKELDNLHFPFLNQTQG-DRYGKASGLTF 640 (894)
T ss_pred --------------------------------cCCCcEEEEEEEECCCCCCHHHHHHhcCccccCCCC-CCCCCCcChhH
Confidence 011235889999999999999999999999986542 34457999999
Q ss_pred HHHHHHHHHcCCEEEEEEeCCCceEEEEEEecC
Q 001044 725 SIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLG 757 (1177)
Q Consensus 725 aIvk~IVe~~GG~I~v~S~~g~GT~f~~~Lpl~ 757 (1177)
+|||+||+.|||+|+++|.+|+||+|+|+||+.
T Consensus 641 aI~k~Lve~~GG~I~v~S~~g~GT~F~I~LPl~ 673 (894)
T PRK10618 641 FLCNQLCRKLGGHLTIKSREGLGTRYSIHLKML 673 (894)
T ss_pred HHHHHHHHHcCCEEEEEECCCCcEEEEEEEEcc
Confidence 999999999999999999999999999999974
No 10
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=100.00 E-value=5.7e-42 Score=440.72 Aligned_cols=367 Identities=21% Similarity=0.266 Sum_probs=292.5
Q ss_pred HHHHHHHHHhHHhhhhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHH
Q 001044 493 NYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQ 572 (1177)
Q Consensus 493 ~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~l~~~~~dL~ 572 (1177)
+...+|++++||||||||++|.|+++++........+..+++..|..++.++..+++++++++|.+.+ ..+++++.
T Consensus 448 ~~l~~~~~~iaHeLrtPL~~I~~~~~~l~~~~~~~~~~~~~l~~i~~~~~rl~~li~~ll~~sr~~~~----~~~~~~l~ 523 (828)
T PRK13837 448 EAVGTLASGIAHNFNNILGAILGYAEMALNKLARHSRAARYIDEIISAGARARLIIDQILAFGRKGER----NTKPFDLS 523 (828)
T ss_pred HHHHHHHHHhhHHhhhHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----CCcEEcHH
Confidence 35678999999999999999999999987654455677788999999999999999999999996544 35689999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccCC-CeEEEEeeccccCCCCCCCcCC
Q 001044 573 KELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSS-GHIIIRGWCENLDTSKNTAEFP 651 (1177)
Q Consensus 573 ~li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~-G~v~v~~~~~~~~~~~~~~~~~ 651 (1177)
+++++++..+... ..+++.+.++.++. +..+.+|+.+|.|||.||++||+||++. |.|.|.+...........
T Consensus 524 ~ll~~~~~~~~~~-~~~~i~l~~~~~~~-~~~v~~d~~~L~qvl~NLl~NAik~~~~~g~I~I~~~~~~~~~~~~~---- 597 (828)
T PRK13837 524 ELVTEIAPLLRVS-LPPGVELDFDQDQE-PAVVEGNPAELQQVLMNLCSNAAQAMDGAGRVDISLSRAKLRAPKVL---- 597 (828)
T ss_pred HHHHHHHHHHHHH-ccCCcEEEEEeCCC-CceEEECHHHHHHHHHHHHHHHHHHcccCCeEEEEEEEeeccccccc----
Confidence 9999999988754 45778888776554 3468999999999999999999999865 566666533211000000
Q ss_pred cccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHHHHHHHH
Q 001044 652 TDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 731 (1177)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~IV 731 (1177)
. .....+...++|+|.|+|+|||++.+++||+|||+.+. +|+||||+|||++|
T Consensus 598 ------------------~---~~~~~~~~~v~i~V~D~G~GI~~e~~~~iFe~F~~~~~------~G~GLGL~i~~~iv 650 (828)
T PRK13837 598 ------------------S---HGVLPPGRYVLLRVSDTGAGIDEAVLPHIFEPFFTTRA------GGTGLGLATVHGIV 650 (828)
T ss_pred ------------------c---cccCCCCCEEEEEEEECCCCCCHHHHHHhhCCcccCCC------CCCcchHHHHHHHH
Confidence 0 00001234578999999999999999999999996432 79999999999999
Q ss_pred HHcCCEEEEEEeCCCceEEEEEEecCCCCccccccCCCCCCcEEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHH
Q 001044 732 NKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQI 811 (1177)
Q Consensus 732 e~~GG~I~v~S~~g~GT~f~~~Lpl~~~~~~~~~~~~~~~~~~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~ 811 (1177)
+.|||+|+++|.+|+||+|+|+||.........
T Consensus 651 ~~~gG~i~v~s~~g~Gt~f~i~LP~~~~~~~~~----------------------------------------------- 683 (828)
T PRK13837 651 SAHAGYIDVQSTVGRGTRFDVYLPPSSKVPVAP----------------------------------------------- 683 (828)
T ss_pred HHCCCEEEEEecCCCeEEEEEEEeCCCCCCCCc-----------------------------------------------
Confidence 999999999999999999999999742110000
Q ss_pred HHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCceEEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccC
Q 001044 812 LRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQ 891 (1177)
Q Consensus 812 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 891 (1177)
. .
T Consensus 684 -------------~-----------------------------------------------------------------~ 685 (828)
T PRK13837 684 -------------Q-----------------------------------------------------------------A 685 (828)
T ss_pred -------------c-----------------------------------------------------------------c
Confidence 0 0
Q ss_pred CCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHhcccccccccccccCCCCCCcccccccccccccchhhcccccccc
Q 001044 892 TTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGEEIRGSIANYSASKHQKFRKCSFEF 971 (1177)
Q Consensus 892 ~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 971 (1177)
.. .|
T Consensus 686 ~~-----------------~~----------------------------------------------------------- 689 (828)
T PRK13837 686 FF-----------------GP----------------------------------------------------------- 689 (828)
T ss_pred cC-----------------CC-----------------------------------------------------------
Confidence 00 00
Q ss_pred ccCCCCCCCchhhhhhhhhhhhccccCCCCCCCCCCCCCCCcchhhccCCcEEEEEecChHHHHHHHHHHhhcCCEEEEE
Q 001044 972 SSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVV 1051 (1177)
Q Consensus 972 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a 1051 (1177)
...+...+.+||||||++.++..+...|+..||++..+
T Consensus 690 ------------------------------------------~~~~~~~~~~ILvVddd~~~~~~l~~~L~~~G~~v~~~ 727 (828)
T PRK13837 690 ------------------------------------------GPLPRGRGETVLLVEPDDATLERYEEKLAALGYEPVGF 727 (828)
T ss_pred ------------------------------------------cccCCCCCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEe
Confidence 00000124589999999999999999999999999999
Q ss_pred cCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEEEecCC
Q 001044 1052 PDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHA 1131 (1177)
Q Consensus 1052 ~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~ 1131 (1177)
.++.+|++.+... ..+||+||+ .||.|+|+++++.||+.. +.+|||++|++.
T Consensus 728 ~s~~~al~~l~~~---------------------~~~~DlVll--~~~~~~g~~l~~~l~~~~-----~~ipIIvls~~~ 779 (828)
T PRK13837 728 STLAAAIAWISKG---------------------PERFDLVLV--DDRLLDEEQAAAALHAAA-----PTLPIILGGNSK 779 (828)
T ss_pred CCHHHHHHHHHhC---------------------CCCceEEEE--CCCCCCHHHHHHHHHhhC-----CCCCEEEEeCCC
Confidence 9999999988531 235899999 799999999999998642 468999999999
Q ss_pred CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1132 MNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1132 ~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
......+++.+| ++||.||++.++|..+|.++++..
T Consensus 780 ~~~~~~~~~~~G-~d~L~KP~~~~~L~~~l~~~l~~~ 815 (828)
T PRK13837 780 TMALSPDLLASV-AEILAKPISSRTLAYALRTALATA 815 (828)
T ss_pred chhhhhhHhhcc-CcEEeCCCCHHHHHHHHHHHHccc
Confidence 999999999999 999999999999999999998754
No 11
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-40 Score=361.43 Aligned_cols=224 Identities=27% Similarity=0.456 Sum_probs=194.1
Q ss_pred HHHHHHHHhHHhhhhHHHHHHHHHHHhhcCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHH
Q 001044 494 YKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTN-EQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQ 572 (1177)
Q Consensus 494 ~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~-e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~l~~~~~dL~ 572 (1177)
.+.+|.||+||||||||+++.+|+|.|.++...+. -..+++..-..+++||.+||||||.+||++....+++.+.+|+.
T Consensus 224 ErRefvanvSHElRTPltsmksyLEALe~ga~~d~eiAp~Fl~vt~~ETeRMiRlV~DLl~lsr~d~~~~qln~e~inft 303 (459)
T COG5002 224 ERREFVANVSHELRTPLTSMKSYLEALEEGAWEDKEIAPRFLRVTLNETERMIRLVNDLLQLSRMDNARYQLNKEWINFT 303 (459)
T ss_pred HHHHHHHhcchhhcCchHHHHHHHHHHhcCCccChhhhhHHHHHhHHHHHHHHHHHHHHHHHccCcchhhhhhHHHHHhH
Confidence 35689999999999999999999999976543232 23467888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcE-EEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccCCC-eEEEEeeccccCCCCCCCcC
Q 001044 573 KELEELVDMFSVQCSNHNVE-TVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG-HIIIRGWCENLDTSKNTAEF 650 (1177)
Q Consensus 573 ~li~~vv~~~~~~a~~k~I~-l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~G-~v~v~~~~~~~~~~~~~~~~ 650 (1177)
..+..+++.+.....++.+. +.-+++. -+.++..|++++.||+.|+|+||+||+|+| .|.+.+..
T Consensus 304 ~fl~~ii~R~e~~~~~e~~~~~vR~~p~-~~~~veiD~DK~tQVldNii~NA~KYsP~Gg~Itv~~~~------------ 370 (459)
T COG5002 304 AFLNEIINRFEMILKKETIARFVRDIPK-QDIWVEIDPDKMTQVLDNIISNALKYSPDGGRITVSVKQ------------ 370 (459)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhcCCC-CceEEEeChhHHHHHHHHHHHHHhhcCCCCCeEEEEEee------------
Confidence 99999999998886655554 4444433 366899999999999999999999999976 46655321
Q ss_pred CcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHHHHHHH
Q 001044 651 PTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTL 730 (1177)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~I 730 (1177)
....+.++|.|.|.|||++++++||++|||+|..++++.|||||||+|+|.|
T Consensus 371 ----------------------------~~~~v~iSI~D~G~gIPk~d~~~iFdrfyRvdkARsR~~gGTGLGLaIakei 422 (459)
T COG5002 371 ----------------------------RETWVEISISDQGLGIPKEDLEKIFDRFYRVDKARSRKMGGTGLGLAIAKEI 422 (459)
T ss_pred ----------------------------eCcEEEEEEccCCCCCCchhHHHHHHHHhhhhhhhhhcCCCCchhHHHHHHH
Confidence 1235789999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEEEeCCCceEEEEEEecCC
Q 001044 731 VNKMGGEIKVVKKNSPGTLMQLYLLLGA 758 (1177)
Q Consensus 731 Ve~~GG~I~v~S~~g~GT~f~~~Lpl~~ 758 (1177)
|+.|||.||.+|+.|+||+|+|+||...
T Consensus 423 V~~hgG~iWA~s~~gkgtt~~ftLPy~~ 450 (459)
T COG5002 423 VQAHGGRIWAESEEGKGTTFSFTLPYSG 450 (459)
T ss_pred HHHhCCeEEEecccCCceEEEEEecccC
Confidence 9999999999999999999999999753
No 12
>PRK13557 histidine kinase; Provisional
Probab=100.00 E-value=1.5e-35 Score=362.49 Aligned_cols=369 Identities=21% Similarity=0.310 Sum_probs=284.6
Q ss_pred HHHHHHHhHHhhhhHHHHHHHHHHHhhcCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceecc
Q 001044 495 KSQFLANMSHELRTPMAAIIGLLEILKSDD----QLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFD 570 (1177)
Q Consensus 495 Ks~Fla~~SHELRTPL~~I~G~~elL~~~~----~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~l~~~~~d 570 (1177)
..++++.++||+||||+.|.|++++|.... .......+.+..|...+.++..++++++++++.. .+....++
T Consensus 163 l~~~~~~i~h~l~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~li~~l~~~~~~~----~~~~~~~~ 238 (540)
T PRK13557 163 LGQLTGGIAHDFNNLLQVMSGYLDVIQAALSHPDADRGRMARSVENIRAAAERAATLTQQLLAFARKQ----RLEGRVLN 238 (540)
T ss_pred hhhhhhhhhHHhhhHHHHHHhHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC----CCCCcccC
Confidence 456899999999999999999999875321 1234455678889999999999999999999853 34566799
Q ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccCCCe-EEEEeeccccCCCCCCCc
Q 001044 571 LQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGH-IIIRGWCENLDTSKNTAE 649 (1177)
Q Consensus 571 L~~li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~G~-v~v~~~~~~~~~~~~~~~ 649 (1177)
+..+++.+...+. ....+++.+.+...+..+ .+.+|+.++.|+|.||+.||+||++.|. +.+............
T Consensus 239 l~~~i~~~~~~~~-~~~~~~~~i~~~~~~~~~-~~~~d~~~l~~vl~nll~NA~~~~~~~~~i~i~~~~~~~~~~~~--- 313 (540)
T PRK13557 239 LNGLVSGMGELAE-RTLGDAVTIETDLAPDLW-NCRIDPTQAEVALLNVLINARDAMPEGGRVTIRTRNVEIEDEDL--- 313 (540)
T ss_pred HHHHHHHHHHHHH-HhcCCCeEEEEecCCCCC-ceeeCHHHHHHHHHHHHHHHHHhcccCCeEEEEEeeeccCcccc---
Confidence 9999998877654 334577888777666554 4789999999999999999999997654 444322111000000
Q ss_pred CCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHHHHHH
Q 001044 650 FPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRT 729 (1177)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~ 729 (1177)
...........+.|+|.|+|+|||++.++++|++||+.+. ..+|+||||+|||+
T Consensus 314 ----------------------~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~~~~~~~----~~~g~GlGL~i~~~ 367 (540)
T PRK13557 314 ----------------------AMYHGLPPGRYVSIAVTDTGSGMPPEILARVMDPFFTTKE----EGKGTGLGLSMVYG 367 (540)
T ss_pred ----------------------ccccCCCCCCEEEEEEEcCCCCCCHHHHHhccCCCcccCC----CCCCCCccHHHHHH
Confidence 0000001223578999999999999999999999996542 34699999999999
Q ss_pred HHHHcCCEEEEEEeCCCceEEEEEEecCCCCccccccCCCCCCcEEEEeecChhHHHHHHHHHHhccceeeeccchhhhH
Q 001044 730 LVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLT 809 (1177)
Q Consensus 730 IVe~~GG~I~v~S~~g~GT~f~~~Lpl~~~~~~~~~~~~~~~~~~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~ 809 (1177)
+++.|||+|+++|.+|+||+|+|+||.........
T Consensus 368 ~v~~~gG~i~~~s~~~~G~~f~i~lP~~~~~~~~~--------------------------------------------- 402 (540)
T PRK13557 368 FAKQSGGAVRIYSEVGEGTTVRLYFPASDQAENPE--------------------------------------------- 402 (540)
T ss_pred HHHHCCCEEEEEecCCCceEEEEEeeCCCCccCCC---------------------------------------------
Confidence 99999999999999999999999998632100000
Q ss_pred HHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCceEEEEEecccccChhHHHHHhhhhhhhhccceeeeeec
Q 001044 810 QILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVN 889 (1177)
Q Consensus 810 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~ 889 (1177)
+
T Consensus 403 -----------~-------------------------------------------------------------------- 403 (540)
T PRK13557 403 -----------Q-------------------------------------------------------------------- 403 (540)
T ss_pred -----------C--------------------------------------------------------------------
Confidence 0
Q ss_pred cCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHhcccccccccccccCCCCCCcccccccccccccchhhcccccc
Q 001044 890 HQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGEEIRGSIANYSASKHQKFRKCSF 969 (1177)
Q Consensus 890 ~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 969 (1177)
.. .
T Consensus 404 --~~----------------------------------------~----------------------------------- 406 (540)
T PRK13557 404 --EP----------------------------------------K----------------------------------- 406 (540)
T ss_pred --CC----------------------------------------C-----------------------------------
Confidence 00 0
Q ss_pred ccccCCCCCCCchhhhhhhhhhhhccccCCCCCCCCCCCCCCCcchhhccCCcEEEEEecChHHHHHHHHHHhhcCCEEE
Q 001044 970 EFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVS 1049 (1177)
Q Consensus 970 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ILIVdD~~~~~~~l~~~L~~~G~~v~ 1049 (1177)
+ .......+.+|||+||++..+..+..+|+..|+.+.
T Consensus 407 ------~-------------------------------------~~~~~~~~~~iliv~~~~~~~~~l~~~l~~~~~~v~ 443 (540)
T PRK13557 407 ------A-------------------------------------RAIDRGGTETILIVDDRPDVAELARMILEDFGYRTL 443 (540)
T ss_pred ------C-------------------------------------cccccCCCceEEEEcCcHHHHHHHHHHHHhcCCeEE
Confidence 0 000001245899999999999999999999999999
Q ss_pred EEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC-CCHHHHHHHHHhcccccCCCCcceEEEe
Q 001044 1050 VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK-MDGYEATIEIRKSESEHGARNIPIVALT 1128 (1177)
Q Consensus 1050 ~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~-mdG~e~~r~IR~~~~~~~~~~ipIIalT 1128 (1177)
.+.++.+|++.+.. ...||+|++|+.||. ++|+++++.||+.. +.+|||++|
T Consensus 444 ~~~~~~~~~~~~~~----------------------~~~~d~vi~d~~~~~~~~~~~~~~~l~~~~-----~~~~ii~~~ 496 (540)
T PRK13557 444 VASNGREALEILDS----------------------HPEVDLLFTDLIMPGGMNGVMLAREARRRQ-----PKIKVLLTT 496 (540)
T ss_pred EeCCHHHHHHHHhc----------------------CCCceEEEEeccCCCCCCHHHHHHHHHHhC-----CCCcEEEEc
Confidence 99999999998742 236999999999997 99999999999753 358999999
Q ss_pred cCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCC
Q 001044 1129 AHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1169 (1177)
Q Consensus 1129 a~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~~ 1169 (1177)
++........++.+|+++|+.||++.++|..+|.+++...+
T Consensus 497 ~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~ 537 (540)
T PRK13557 497 GYAEASIERTDAGGSEFDILNKPYRRAELARRVRMVLDGPT 537 (540)
T ss_pred CCCchhhhhhhccccCCceeeCCCCHHHHHHHHHHHhcCCC
Confidence 99888888889999999999999999999999999887654
No 13
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=6.3e-37 Score=364.71 Aligned_cols=226 Identities=29% Similarity=0.503 Sum_probs=196.8
Q ss_pred HHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhcC-CCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccc
Q 001044 488 AEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSD-DQLTNE-QYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELE 565 (1177)
Q Consensus 488 ae~~~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~-~~l~~e-~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~l~ 565 (1177)
+.+..+.++.|++++||||||||++|.|.++.|... ..++++ +.+.+..|.+++.+|.++|++|||++|+++|.++++
T Consensus 653 ~~e~E~lRsaLL~sISHDLRTPLt~i~Gaa~tL~~~~~~l~~~~~aeLl~~I~ees~~L~rlV~NLLdmTRi~sG~~~l~ 732 (890)
T COG2205 653 AAERERLRSALLASISHDLRTPLTAIMGAAETLLLDGEALSPEDRAELLSSIREESERLTRLVTNLLDMTRLQSGGVNLK 732 (890)
T ss_pred HHHHHHHHHHHHHHhhccccCcHHHHhhhHHHhhhcccccCcHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcccc
Confidence 344567789999999999999999999999998754 345555 567788899999999999999999999999999999
Q ss_pred ceeccHHHHHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccCCCe-EEEEeeccccCCC
Q 001044 566 NTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGH-IIIRGWCENLDTS 644 (1177)
Q Consensus 566 ~~~~dL~~li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~G~-v~v~~~~~~~~~~ 644 (1177)
.++..+.+++.+++.........+. +..+++++++ .+.+|...|.|||.|||+||+||+++|. |.|.++..
T Consensus 733 ~~~~~veEvVg~Al~r~~k~~~~~~--i~v~~~~dl~-li~~D~~LieQVLiNLleNA~Kyap~~s~I~I~~~~~----- 804 (890)
T COG2205 733 LDWVLVEEVVGEALQRLRKRFTGHK--IVVSVPVDLP-LIHVDSPLIEQVLINLLENALKYAPPGSEIRINAGVE----- 804 (890)
T ss_pred cchhhHHHHHHHHHHHhhhhcCCce--EEEecCCCCc-eEecCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEEe-----
Confidence 9999999999999987776666555 5566677766 5899999999999999999999999885 77765422
Q ss_pred CCCCcCCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhH
Q 001044 645 KNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGL 724 (1177)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGL 724 (1177)
...++|+|.|+|+|||++++++||++||++++... ..|+||||
T Consensus 805 -----------------------------------~~~v~~~V~DeGpGIP~~~~~~IFD~F~r~~~~~~--~~G~GLGL 847 (890)
T COG2205 805 -----------------------------------RENVVFSVIDEGPGIPEGELERIFDKFYRGNKESA--TRGVGLGL 847 (890)
T ss_pred -----------------------------------cceEEEEEEeCCCCCChhHHHHhhhhhhcCCCCCC--CCCccccH
Confidence 12488999999999999999999999999986433 67999999
Q ss_pred HHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCC
Q 001044 725 SIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA 758 (1177)
Q Consensus 725 aIvk~IVe~~GG~I~v~S~~g~GT~f~~~Lpl~~ 758 (1177)
+||+.||+.|||+|++++.+++|++|.|+||...
T Consensus 848 sIc~~iv~ahgG~I~a~~~~~gGa~f~~~LP~~~ 881 (890)
T COG2205 848 AICRGIVEAHGGTISAENNPGGGAIFVFTLPVEE 881 (890)
T ss_pred HHHHHHHHHcCCeEEEEEcCCCceEEEEEeecCC
Confidence 9999999999999999999999999999999864
No 14
>PRK09303 adaptive-response sensory kinase; Validated
Probab=100.00 E-value=6.6e-35 Score=343.48 Aligned_cols=233 Identities=23% Similarity=0.330 Sum_probs=200.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhcCCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001044 483 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQL------TNEQYSTVCQIKKSSYALLRLLNRILDLSK 556 (1177)
Q Consensus 483 ~a~~~ae~~~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l------~~e~~~~l~~I~~ss~~L~~LIndLLdlSk 556 (1177)
++++++++..+.|.+|++++||||||||++|.+++++|...... .+...+.+..+.++..+|..++++++++++
T Consensus 139 ~~~~~l~e~~~~~~~l~~~iaHeLrtPLt~i~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~ll~~~~ 218 (380)
T PRK09303 139 QENETLLEQLKFKDRVLAMLAHDLRTPLTAASLALETLELGQIDEDTELKPALIEQLQDQARRQLEEIERLITDLLEVGR 218 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556667799999999999999999999999998743221 122456778899999999999999999999
Q ss_pred hccCCccccceeccHHHHHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccCCC-eEEEE
Q 001044 557 VESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG-HIIIR 635 (1177)
Q Consensus 557 iEsg~l~l~~~~~dL~~li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~G-~v~v~ 635 (1177)
.+.+...++.+++++.+++++++..+...+..+++.+.++++.+.| .+.+|+.+|.|||.|||+||+||++.| .|.+.
T Consensus 219 ~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~l~~~~~~~~~-~v~~d~~~l~qvl~NLl~NAik~~~~~~~I~i~ 297 (380)
T PRK09303 219 TRWEALRFNPQKLDLGSLCQEVILELEKRWLAKSLEIQTDIPSDLP-SVYADQERIRQVLLNLLDNAIKYTPEGGTITLS 297 (380)
T ss_pred hhcCCceeccccCCHHHHHHHHHHHHHHHHHHcCCEEEEEcCCCCC-eEEeCHHHHHHHHHHHHHHHHhcCCCCceEEEE
Confidence 9999999999999999999999999999999999999999877765 589999999999999999999999865 55554
Q ss_pred eeccccCCCCCCCcCCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCC
Q 001044 636 GWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTR 715 (1177)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~ 715 (1177)
+.. .....+.|+|.|+|+|||++.+++||+|||+.+. .+
T Consensus 298 ~~~---------------------------------------~~~~~v~i~V~D~G~GI~~~~~~~iF~pf~~~~~--~~ 336 (380)
T PRK09303 298 MLH---------------------------------------RTTQKVQVSICDTGPGIPEEEQERIFEDRVRLPR--DE 336 (380)
T ss_pred EEe---------------------------------------cCCCEEEEEEEEcCCCCCHHHHHHHccCceeCCC--CC
Confidence 321 1122478999999999999999999999998865 34
Q ss_pred CCCccchhHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecC
Q 001044 716 KHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLG 757 (1177)
Q Consensus 716 ~~~GtGLGLaIvk~IVe~~GG~I~v~S~~g~GT~f~~~Lpl~ 757 (1177)
..+|+||||+||++||+.|||+|+++|.+++||+|+|+||+.
T Consensus 337 ~~~G~GLGL~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP~~ 378 (380)
T PRK09303 337 GTEGYGIGLSVCRRIVRVHYGQIWVDSEPGQGSCFHFTLPVY 378 (380)
T ss_pred CCCcccccHHHHHHHHHHcCCEEEEEecCCCccEEEEEEecC
Confidence 567999999999999999999999999999999999999974
No 15
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=100.00 E-value=1.5e-32 Score=328.62 Aligned_cols=221 Identities=25% Similarity=0.390 Sum_probs=188.5
Q ss_pred HHHHHHHHhHHhhhhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHHH
Q 001044 494 YKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQK 573 (1177)
Q Consensus 494 ~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~l~~~~~dL~~ 573 (1177)
.+.+|++++||||||||++|.|++++|.......+...+.+..|.+++.+|..+++++++++|++.+......+.+++..
T Consensus 203 ~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~r~~~~~~~~~~~~~~~~~ 282 (430)
T PRK11006 203 ARRNFFANVSHELRTPLTVLQGYLEMMQDQPLEGALREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTIDLNEKVDVPM 282 (430)
T ss_pred HHHHHHHHhHHHhcchHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCccCHHH
Confidence 35579999999999999999999999875444445566788889999999999999999999999987776778899999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccCCC-eEEEEeeccccCCCCCCCcCCc
Q 001044 574 ELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG-HIIIRGWCENLDTSKNTAEFPT 652 (1177)
Q Consensus 574 li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~G-~v~v~~~~~~~~~~~~~~~~~~ 652 (1177)
+++.+...+.... .+++.+.+++++.. .+.+|+.+|.||+.||++||+||+++| .|.+.+..
T Consensus 283 ~~~~l~~~~~~~~-~~~~~i~~~~~~~~--~i~~d~~~l~~vl~NLl~NAik~~~~~~~I~i~~~~-------------- 345 (430)
T PRK11006 283 MLRVLEREAQTLS-QGKHTITFEVDNSL--KVFGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQR-------------- 345 (430)
T ss_pred HHHHHHHHHHHHh-cCCcEEEEecCCCc--eEEECHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEE--------------
Confidence 9988877665555 67788888776554 588999999999999999999999865 45554321
Q ss_pred ccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHHHHHHHHH
Q 001044 653 DRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVN 732 (1177)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~IVe 732 (1177)
+...+.|+|.|+|+|||++.++++|+|||+.+.+.+++.+|+||||+|||++++
T Consensus 346 --------------------------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G~GLGL~ivk~iv~ 399 (430)
T PRK11006 346 --------------------------VPQGAEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHALS 399 (430)
T ss_pred --------------------------cCCEEEEEEEEcCCCCCHHHHHHhccCcccccCCCCCCCCCCchHHHHHHHHHH
Confidence 112367999999999999999999999999887666777899999999999999
Q ss_pred HcCCEEEEEEeCCCceEEEEEEecC
Q 001044 733 KMGGEIKVVKKNSPGTLMQLYLLLG 757 (1177)
Q Consensus 733 ~~GG~I~v~S~~g~GT~f~~~Lpl~ 757 (1177)
.|||+|+++|.+|+||+|+|+||..
T Consensus 400 ~~gG~i~i~s~~~~Gt~f~i~lP~~ 424 (430)
T PRK11006 400 HHDSRLEIESEVGKGTRFSFVLPER 424 (430)
T ss_pred HCCCEEEEEecCCCceEEEEEechH
Confidence 9999999999999999999999864
No 16
>PRK10604 sensor protein RstB; Provisional
Probab=100.00 E-value=9.1e-32 Score=322.24 Aligned_cols=222 Identities=24% Similarity=0.348 Sum_probs=188.0
Q ss_pred HHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccce
Q 001044 488 AEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENT 567 (1177)
Q Consensus 488 ae~~~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~l~~~ 567 (1177)
.++..+.+.+|++++||||||||+.|.+.++++.. ..+++. ..+.+..++|..++++++.++|++.+...+..+
T Consensus 205 l~~~~~~~~~l~~~vsHeLrtPL~~i~~~l~~l~~---~~~~~~---~~i~~~~~~l~~li~~ll~~~rl~~~~~~~~~~ 278 (433)
T PRK10604 205 INALIASKKQLIDGIAHELRTPLVRLRYRLEMSDN---LSAAES---QALNRDIGQLEALIEELLTYARLDRPQNELHLS 278 (433)
T ss_pred HHHHHHHHHHHHHHhhHhhcChHHHHHHHHHHhcC---CCcHHH---HHHHHHHHHHHHHHHHHHHHHhccCCCcccCCC
Confidence 34444567889999999999999999999998752 222222 237788999999999999999999999888999
Q ss_pred eccHHHHHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccCCCeEEEEeeccccCCCCCC
Q 001044 568 EFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNT 647 (1177)
Q Consensus 568 ~~dL~~li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~~~ 647 (1177)
++++.+++++++..+......+++++.++.+ +..+.+|+..+.+|+.|||+||+||+. |.|.|.+...
T Consensus 279 ~~~l~~~l~~~i~~~~~~~~~~~i~~~~~~~---~~~~~~d~~~l~~vl~NLl~NAik~~~-~~I~I~~~~~-------- 346 (433)
T PRK10604 279 EPDLPAWLSTHLADIQAVTPEKTVRLDTPHQ---GDYGALDMRLMERVLDNLLNNALRYAH-SRVRVSLLLD-------- 346 (433)
T ss_pred CCCHHHHHHHHHHHHHHHhhcCcEEEEecCC---CceEecCHHHHHHHHHHHHHHHHHhCC-CeEEEEEEEE--------
Confidence 9999999999999998888888877765432 235778999999999999999999985 6666654321
Q ss_pred CcCCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHHHH
Q 001044 648 AEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIV 727 (1177)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIv 727 (1177)
...+.|+|.|+|+|||++++++||+|||+.+.+++++.+|+||||+||
T Consensus 347 --------------------------------~~~~~I~V~D~G~Gi~~e~~~~if~~f~r~~~~~~~~~~g~GLGL~iv 394 (433)
T PRK10604 347 --------------------------------GNQACLIVEDDGPGIPPEERERVFEPFVRLDPSRDRATGGCGLGLAIV 394 (433)
T ss_pred --------------------------------CCEEEEEEEEcCCCCCHHHHhhcCCCCccCCCCCCCCCCCccchHHHH
Confidence 123779999999999999999999999999887777778999999999
Q ss_pred HHHHHHcCCEEEEEEeCCCceEEEEEEecCCC
Q 001044 728 RTLVNKMGGEIKVVKKNSPGTLMQLYLLLGAS 759 (1177)
Q Consensus 728 k~IVe~~GG~I~v~S~~g~GT~f~~~Lpl~~~ 759 (1177)
|++++.|||+|.++|.+++||+|++.+|...+
T Consensus 395 k~i~~~~gG~i~v~s~~~~G~~f~i~lP~~~~ 426 (433)
T PRK10604 395 HSIALAMGGSVNCDESELGGARFSFSWPVWHN 426 (433)
T ss_pred HHHHHHCCCEEEEEecCCCeeEEEEEEeCCCC
Confidence 99999999999999999999999999998653
No 17
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-29 Score=293.12 Aligned_cols=212 Identities=24% Similarity=0.341 Sum_probs=180.4
Q ss_pred HHHHHHHhHHhhhhHHHHHHHHHHH---hhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccH
Q 001044 495 KSQFLANMSHELRTPMAAIIGLLEI---LKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDL 571 (1177)
Q Consensus 495 Ks~Fla~~SHELRTPL~~I~G~~el---L~~~~~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~l~~~~~dL 571 (1177)
..++.+.+||||..||++|.++++- |.+.. ..++..+.+..|..=++||-.+...|-.|++--... ..++.+
T Consensus 384 LGQmSA~iaHElNQPLaaiRt~adna~~lLerg-r~e~a~~Nl~~I~~LteRma~It~~Lk~FArk~~~a----~~~v~l 458 (603)
T COG4191 384 LGQMSAGIAHELNQPLAAIRTYADNARLLLERG-RTEEARENLERISALTERMAAITAHLKSFARKSRDA----AGPVSL 458 (603)
T ss_pred HHHHHHHHHHHhcCcHHHHHhHHHHHHHHHHcC-ChHHHHhHHHHHHHHHHHHHHHHHHHHHHhccCccc----cCCccH
Confidence 3468899999999999999999873 33332 456778899999999999999999999999865443 568999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccC---CCeEEEEeeccccCCCCCCC
Q 001044 572 QKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTS---SGHIIIRGWCENLDTSKNTA 648 (1177)
Q Consensus 572 ~~li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~---~G~v~v~~~~~~~~~~~~~~ 648 (1177)
.+.|+++...+..+.+..+..+..++++. +.+|.+|+.||+|||.|||.||+..+. ++.|.|++..+
T Consensus 459 ~~ai~~Al~ll~~R~~~~~~~l~~~~~~~-~~~V~~~~iRLeQVLvNLl~NALDA~~~~~~~~i~i~~~~~--------- 528 (603)
T COG4191 459 REAIEGALELLRGRLRAAGVELELDLPDA-PLWVMANEIRLEQVLVNLLQNALDAMAGQEDRRLSIRAQRE--------- 528 (603)
T ss_pred HHHHHHHHHHHHHhhhccCceeeccCCCC-CceeecchhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEec---------
Confidence 99999999999999999999998887654 558999999999999999999999974 46666664321
Q ss_pred cCCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHHHHH
Q 001044 649 EFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVR 728 (1177)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk 728 (1177)
...+.++|.|||+||++|.+.++|+||+..+ ....|.||||+||+
T Consensus 529 -------------------------------~~~v~l~VrDnGpGi~~e~~~~lFePF~TtK----~~~~GLGLGLaIS~ 573 (603)
T COG4191 529 -------------------------------GGQVVLTVRDNGPGIAPEALPHLFEPFFTTK----PVGKGLGLGLAISQ 573 (603)
T ss_pred -------------------------------CCeEEEEEccCCCCCCHHHHHhhcCCccccC----cccCCcchhHHHHH
Confidence 2247899999999999999999999999533 23579999999999
Q ss_pred HHHHHcCCEEEEEEeCCCceEEEEEEec
Q 001044 729 TLVNKMGGEIKVVKKNSPGTLMQLYLLL 756 (1177)
Q Consensus 729 ~IVe~~GG~I~v~S~~g~GT~f~~~Lpl 756 (1177)
.|++-|||+|++.+.++.|+.|++.|+.
T Consensus 574 ~i~~d~GGsL~v~n~~~~Ga~F~i~L~~ 601 (603)
T COG4191 574 NIARDLGGSLEVANHPEGGASFTIELRR 601 (603)
T ss_pred HHHHHhCCeEEeecCCCCceEEEEEeec
Confidence 9999999999999999999999999974
No 18
>PRK10815 sensor protein PhoQ; Provisional
Probab=100.00 E-value=1.1e-30 Score=316.69 Aligned_cols=217 Identities=23% Similarity=0.328 Sum_probs=184.2
Q ss_pred HHHHHHHHHHhHHhhhhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccH
Q 001044 492 NNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDL 571 (1177)
Q Consensus 492 ~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~l~~~~~dL 571 (1177)
.+...+|++++||||||||++|.++++.|..+.....++ ....+.+...++.++++++++.++++++...+..+.+++
T Consensus 263 ~~~~~~~l~~isHELRTPLt~I~~~l~~L~~~~~~~~~~--~~~~~~~~i~ri~~~i~~ll~~~~~~~~~~~~~~~~~~l 340 (485)
T PRK10815 263 YTKYRTTLTDLTHSLKTPLAVLQSTLRSLRSGKQMSVEQ--AEPIMLEQISRISQQIGYYLHRASMRSEHNLLSRELHSV 340 (485)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccceecH
Confidence 344567999999999999999999999987654344333 234567788899999999999999999888888899999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccCCCeEEEEeeccccCCCCCCCcCC
Q 001044 572 QKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFP 651 (1177)
Q Consensus 572 ~~li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~~~~~~~ 651 (1177)
..+++++++.+...+..+++.+.++++++. .+.+|+..|.||+.|||+||+||++++ +.|.+..
T Consensus 341 ~~ll~~~~~~l~~~~~~~~i~i~~~~~~~~--~v~~d~~~l~~vl~NLi~NAik~~~~~-i~I~~~~------------- 404 (485)
T PRK10815 341 APLLDNLTSALNKVYQRKGVNITLDISPEI--TFVGEKNDFMEVMGNVLDNACKYCLEF-VEISARQ------------- 404 (485)
T ss_pred HHHHHHHHHHHHHHHHHCCcEEEEecCCCc--EEEeCHHHHHHHHHHHHHHHHHhcCCc-EEEEEEE-------------
Confidence 999999999999999999999998876543 578999999999999999999999753 4443311
Q ss_pred cccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHHHHHHHH
Q 001044 652 TDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 731 (1177)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~IV 731 (1177)
+...+.|+|.|+|+|||++.++++|+|||+.+.. .+|+||||+||++||
T Consensus 405 ---------------------------~~~~v~I~V~D~G~GI~~e~~~~iF~~f~~~~~~----~~G~GLGL~Ivk~iv 453 (485)
T PRK10815 405 ---------------------------TDEHLHIVVEDDGPGIPESKRELIFDRGQRADTL----RPGQGLGLSVAREIT 453 (485)
T ss_pred ---------------------------eCCEEEEEEEECCCCcCHHHHHHHhCCcccCCCC----CCCcchhHHHHHHHH
Confidence 1124779999999999999999999999987532 359999999999999
Q ss_pred HHcCCEEEEEEeCCCceEEEEEEecC
Q 001044 732 NKMGGEIKVVKKNSPGTLMQLYLLLG 757 (1177)
Q Consensus 732 e~~GG~I~v~S~~g~GT~f~~~Lpl~ 757 (1177)
+.|||+|.++|.+++||+|++.||..
T Consensus 454 ~~~gG~i~v~s~~~~Gt~f~i~lp~~ 479 (485)
T PRK10815 454 EQYEGKISAGDSPLGGARMEVIFGRQ 479 (485)
T ss_pred HHcCCEEEEEECCCCEEEEEEEEcCC
Confidence 99999999999999999999999864
No 19
>PRK09835 sensor kinase CusS; Provisional
Probab=100.00 E-value=6.6e-30 Score=309.12 Aligned_cols=224 Identities=26% Similarity=0.416 Sum_probs=190.2
Q ss_pred HHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccee
Q 001044 489 EASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTE 568 (1177)
Q Consensus 489 e~~~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~l~~~~ 568 (1177)
++..+.+.+|++++||||||||+.|.+.++.+........+..+.+..+..+..++..++++++++++.+.+.......+
T Consensus 256 ~~~~~~~~~~~~~laheL~tpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~ 335 (482)
T PRK09835 256 EDVFTRQSNFSADIAHEIRTPITNLITQTEIALSQSRSQKELEDVLYSNLEELTRMAKMVSDMLFLAQADNNQLIPEKKM 335 (482)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcee
Confidence 33445567899999999999999999999987655444445556677778888999999999999999999988888899
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccCCCe-EEEEeeccccCCCCCC
Q 001044 569 FDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGH-IIIRGWCENLDTSKNT 647 (1177)
Q Consensus 569 ~dL~~li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~G~-v~v~~~~~~~~~~~~~ 647 (1177)
+++.++++++++.+...+.++++.+.++.+ +..+.+|+.+|.||+.||++||+||+++|+ |.|.+...
T Consensus 336 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~d~~~l~~vl~nll~Na~~~~~~~~~I~i~~~~~-------- 404 (482)
T PRK09835 336 LDLADEVGKVFDFFEAWAEERGVELRFVGD---PCQVAGDPLMLRRAISNLLSNALRYTPAGEAITVRCQEV-------- 404 (482)
T ss_pred ecHHHHHHHHHHHHHHHHhhCCEEEEEeCC---CcEEEECHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEe--------
Confidence 999999999999999999999988876532 336889999999999999999999997654 66654211
Q ss_pred CcCCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHHHH
Q 001044 648 AEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIV 727 (1177)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIv 727 (1177)
...+.|+|.|+|+|||++.++++|+|||+.+.+..++.+|+||||+||
T Consensus 405 --------------------------------~~~~~i~v~d~G~gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~ 452 (482)
T PRK09835 405 --------------------------------DHQVQLVVENPGTPIAPEHLPRLFDRFYRVDPSRQRKGEGSGIGLAIV 452 (482)
T ss_pred --------------------------------CCEEEEEEEECCCCcCHHHHHHHhCCcccCCCCCCCCCCCcchHHHHH
Confidence 113779999999999999999999999999877666678999999999
Q ss_pred HHHHHHcCCEEEEEEeCCCceEEEEEEec
Q 001044 728 RTLVNKMGGEIKVVKKNSPGTLMQLYLLL 756 (1177)
Q Consensus 728 k~IVe~~GG~I~v~S~~g~GT~f~~~Lpl 756 (1177)
+++++.|||+|+++|. +.||+|++.||.
T Consensus 453 ~~i~~~~~g~i~~~s~-~~g~~~~i~lP~ 480 (482)
T PRK09835 453 KSIVVAHKGTVAVTSD-ARGTRFVISLPR 480 (482)
T ss_pred HHHHHHCCCEEEEEEC-CCcEEEEEEeeC
Confidence 9999999999999997 469999999985
No 20
>PRK10364 sensor protein ZraS; Provisional
Probab=100.00 E-value=4.6e-30 Score=309.44 Aligned_cols=214 Identities=25% Similarity=0.441 Sum_probs=183.6
Q ss_pred HHHHHHHHhHHhhhhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHHH
Q 001044 494 YKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQK 573 (1177)
Q Consensus 494 ~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~l~~~~~dL~~ 573 (1177)
...+|.+++||||||||++|.|+++++........+..+....|.++++++..++++++++++.. .....++++.+
T Consensus 236 ~~~~~~~~laHelrtpL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~ll~~~~~~----~~~~~~~~l~~ 311 (457)
T PRK10364 236 ALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRVVSELLELVKPT----HLALQAVDLND 311 (457)
T ss_pred HHHHHHHHhhHHhccHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC----CCcceEecHHH
Confidence 34579999999999999999999999876554455666778889999999999999999999843 34567899999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccCC-CeEEEEeeccccCCCCCCCcCCc
Q 001044 574 ELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSS-GHIIIRGWCENLDTSKNTAEFPT 652 (1177)
Q Consensus 574 li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~-G~v~v~~~~~~~~~~~~~~~~~~ 652 (1177)
++++++..+...+.++++.+.++.++..+ .+.+|+.+|.|++.|||+||+||++. |.|.|.+...
T Consensus 312 ~l~~~~~~~~~~~~~~~i~l~~~~~~~~~-~~~~d~~~l~~il~NLl~NA~k~~~~~~~I~i~~~~~------------- 377 (457)
T PRK10364 312 LINHSLQLVSQDANSREIQLRFTANDTLP-EIQADPDRLTQVLLNLYLNAIQAIGQHGVISVTASES------------- 377 (457)
T ss_pred HHHHHHHHHHHHHHhcCeEEEEEcCCCCc-eEEECHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEe-------------
Confidence 99999999999999999999998876554 57899999999999999999999864 4566554211
Q ss_pred ccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHHHHHHHHH
Q 001044 653 DRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVN 732 (1177)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~IVe 732 (1177)
...+.|+|.|+|+|||++.++++|++||+. +.+|+||||+|||++++
T Consensus 378 ---------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~------k~~g~GlGL~iv~~~v~ 424 (457)
T PRK10364 378 ---------------------------GAGVKISVTDSGKGIAADQLEAIFTPYFTT------KAEGTGLGLAVVHNIVE 424 (457)
T ss_pred ---------------------------CCeEEEEEEECCCCCCHHHHHHHhCccccC------CCCCCcccHHHHHHHHH
Confidence 123789999999999999999999999853 24589999999999999
Q ss_pred HcCCEEEEEEeCCCceEEEEEEecCC
Q 001044 733 KMGGEIKVVKKNSPGTLMQLYLLLGA 758 (1177)
Q Consensus 733 ~~GG~I~v~S~~g~GT~f~~~Lpl~~ 758 (1177)
.|||+|+++|.+++||+|++.||+..
T Consensus 425 ~~gG~i~i~s~~~~Gt~f~i~lP~~~ 450 (457)
T PRK10364 425 QHGGTIQVASQEGKGATFTLWLPVNI 450 (457)
T ss_pred HCCCEEEEEeCCCCcEEEEEEecCCC
Confidence 99999999999999999999999853
No 21
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=100.00 E-value=8.8e-30 Score=320.84 Aligned_cols=224 Identities=23% Similarity=0.345 Sum_probs=189.4
Q ss_pred HHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccce
Q 001044 488 AEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENT 567 (1177)
Q Consensus 488 ae~~~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~l~~~ 567 (1177)
.++..+...+|.+.+|||+||||+.|.+.++.+... ...++..+.+..+..++.+|..+++++++++++|.+....+.+
T Consensus 478 L~~~~~~l~~~s~~lSHELrtPL~~I~~~le~L~~~-~~~~~~~~~le~i~~~i~~L~~li~~l~~~arle~~~~~~~~~ 556 (703)
T TIGR03785 478 LRQYTHYLENMSSRLSHELRTPVAVVRSSLENLELQ-ALEQEKQKYLERAREGTERLSMILNNMSEATRLEQAIQSAEVE 556 (703)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccce
Confidence 344455567899999999999999999999998643 3456666788899999999999999999999999888888889
Q ss_pred eccHHHHHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccCCC-eEEEEeeccccCCCCC
Q 001044 568 EFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG-HIIIRGWCENLDTSKN 646 (1177)
Q Consensus 568 ~~dL~~li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~G-~v~v~~~~~~~~~~~~ 646 (1177)
++|+.+++++++..+...+..+++.+.++.+ +..+.+|+..|.|++.|||+||+||+++| .|.|.+..
T Consensus 557 ~~dl~~ll~~~i~~~~~~~~~~~i~l~i~~~---~~~i~~d~~~L~~il~NLI~NAik~s~~~~~I~I~~~~-------- 625 (703)
T TIGR03785 557 DFDLSEVLSGCMQGYQMTYPPQRFELNIPET---PLVMRGSPELIAQMLDKLVDNAREFSPEDGLIEVGLSQ-------- 625 (703)
T ss_pred eecHHHHHHHHHHHHHHHhhcCCEEEEecCC---CeEEEECHHHHHHHHHHHHHHHHHHCCCCCeEEEEEEE--------
Confidence 9999999999999999988888877766432 23689999999999999999999999765 45554321
Q ss_pred CCcCCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHHH
Q 001044 647 TAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSI 726 (1177)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaI 726 (1177)
+...+.|+|.|+|+||+++.+++||++||+.+.......+|+||||+|
T Consensus 626 --------------------------------~~~~v~I~V~D~G~GI~~e~~~~IFe~F~t~~~~~~~~~~g~GLGL~I 673 (703)
T TIGR03785 626 --------------------------------NKSHALLTVSNEGPPLPEDMGEQLFDSMVSVRDQGAQDQPHLGLGLYI 673 (703)
T ss_pred --------------------------------cCCEEEEEEEEcCCCCCHHHHHHHhCCCeecCCCCCCCCCCccHHHHH
Confidence 112477999999999999999999999998765544455689999999
Q ss_pred HHHHHHHcCCEEEEEEeCC-CceEEEEEEe
Q 001044 727 VRTLVNKMGGEIKVVKKNS-PGTLMQLYLL 755 (1177)
Q Consensus 727 vk~IVe~~GG~I~v~S~~g-~GT~f~~~Lp 755 (1177)
||+|++.|||+|.+++.++ .|++|+|.||
T Consensus 674 vr~Iv~~~gG~I~v~s~~~g~Gt~f~I~LP 703 (703)
T TIGR03785 674 VRLIADFHQGRIQAENRQQNDGVVFRISLP 703 (703)
T ss_pred HHHHHHHcCCEEEEEECCCCCeEEEEEEeC
Confidence 9999999999999999875 8999999987
No 22
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=100.00 E-value=2.9e-30 Score=311.14 Aligned_cols=228 Identities=29% Similarity=0.465 Sum_probs=195.5
Q ss_pred HHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccce
Q 001044 488 AEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENT 567 (1177)
Q Consensus 488 ae~~~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~l~~~ 567 (1177)
.++..+.+.+|++++||||||||+.|.+.++.+..... +...+.+..+...+.+|.+++++++++++.+.+...+..+
T Consensus 233 l~~~~~~~~~~~~~~shel~~pL~~i~~~~~~l~~~~~--~~~~~~l~~~~~~~~~l~~li~~l~~l~~~~~~~~~~~~~ 310 (466)
T PRK10549 233 LEKNEQMRRDFMADISHELRTPLAVLRGELEAIQDGVR--KFTPESVASLQAEVGTLTKLVDDLHQLSLSDEGALAYRKT 310 (466)
T ss_pred HHHHHHHHHHHHHHHhHHhCChHHHHHHHHHHHHhccc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC
Confidence 33445567789999999999999999999999875422 2223456678888999999999999999999999999999
Q ss_pred eccHHHHHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccCCC-eEEEEeeccccCCCCC
Q 001044 568 EFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG-HIIIRGWCENLDTSKN 646 (1177)
Q Consensus 568 ~~dL~~li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~G-~v~v~~~~~~~~~~~~ 646 (1177)
++++.+++++++..+......+++++.+++++.. .+.+|+.++.|++.|||+||+||+++| .|.|.+..
T Consensus 311 ~~~~~~~l~~~~~~~~~~~~~~~i~i~~~~~~~~--~~~~d~~~l~qvl~nll~NAi~~~~~~~~I~i~~~~-------- 380 (466)
T PRK10549 311 PVDLVPLLEVAGGAFRERFASRGLTLQLSLPDSA--TVFGDPDRLMQLFNNLLENSLRYTDSGGSLHISAEQ-------- 380 (466)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCcEEEEecCCCc--EEEeCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEE--------
Confidence 9999999999999999999999999988876543 577999999999999999999999764 56655321
Q ss_pred CCcCCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHHH
Q 001044 647 TAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSI 726 (1177)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaI 726 (1177)
+...+.|+|.|+|+|||++.++++|+|||+.+.+..+..+|+||||+|
T Consensus 381 --------------------------------~~~~~~i~V~D~G~Gi~~e~~~~lf~~~~~~~~~~~~~~~g~GlGL~i 428 (466)
T PRK10549 381 --------------------------------RDKTLRLTFADSAPGVSDEQLQKLFERFYRTEGSRNRASGGSGLGLAI 428 (466)
T ss_pred --------------------------------cCCEEEEEEEecCCCcCHHHHHHhccCcccCCCCcCCCCCCCcHHHHH
Confidence 112478999999999999999999999999987666667899999999
Q ss_pred HHHHHHHcCCEEEEEEeCCCceEEEEEEecCCC
Q 001044 727 VRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGAS 759 (1177)
Q Consensus 727 vk~IVe~~GG~I~v~S~~g~GT~f~~~Lpl~~~ 759 (1177)
|+++++.|||++.++|.+++||+|+|.||+..+
T Consensus 429 v~~i~~~~~G~l~~~s~~~~G~~~~i~lP~~~~ 461 (466)
T PRK10549 429 CLNIVEAHNGRIIAAHSPFGGVSITVELPLERD 461 (466)
T ss_pred HHHHHHHcCCEEEEEECCCCeEEEEEEccCCCC
Confidence 999999999999999999999999999998643
No 23
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=99.97 E-value=7e-30 Score=306.13 Aligned_cols=220 Identities=27% Similarity=0.422 Sum_probs=189.4
Q ss_pred HHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceecc
Q 001044 491 SNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFD 570 (1177)
Q Consensus 491 ~~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~l~~~~~d 570 (1177)
..+...+|.+++||||||||+.+.++++.+.......++..+.+..+.....+|..++++++++++++.....++.++++
T Consensus 237 ~~~~~~~~~~~~~h~l~tpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~ 316 (457)
T TIGR01386 237 AFQRLSQFSADLAHELRTPLTNLLGQTQVALSQPRTGEEYREVLESNLEELERLSRMVSDMLFLARADNGQLALERVRLD 316 (457)
T ss_pred HHHHHHHHHHhhhhhhcCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccC
Confidence 33445679999999999999999999998765444445555677778888999999999999999999998888999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccCC-CeEEEEeeccccCCCCCCCc
Q 001044 571 LQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSS-GHIIIRGWCENLDTSKNTAE 649 (1177)
Q Consensus 571 L~~li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~-G~v~v~~~~~~~~~~~~~~~ 649 (1177)
+.++++++++.+...+.++++.+.++.+ ..+.+|+..|.+++.||++||+||+++ |.|.|....
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~l~~~~~nll~Nai~~~~~~~~I~i~~~~----------- 381 (457)
T TIGR01386 317 LAAELAKVAEYFEPLAEERGVRIRVEGE----GLVRGDPQMFRRAISNLLSNALRHTPDGGTITVRIER----------- 381 (457)
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEecCC----ceEEECHHHHHHHHHHHHHHHHHcCCCCceEEEEEEe-----------
Confidence 9999999999999989999988766532 358999999999999999999999976 466665421
Q ss_pred CCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHHHHHH
Q 001044 650 FPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRT 729 (1177)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~ 729 (1177)
+...+.|+|.|+|+|||++.++++|++||+.+.++++..+|+||||+||++
T Consensus 382 -----------------------------~~~~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~~~ 432 (457)
T TIGR01386 382 -----------------------------RSDEVRVSVSNPGPGIPPEHLSRLFDRFYRVDPARSNSGEGTGLGLAIVRS 432 (457)
T ss_pred -----------------------------cCCEEEEEEEeCCCCCCHHHHHHhccccccCCcccCCCCCCccccHHHHHH
Confidence 112477999999999999999999999999987766677899999999999
Q ss_pred HHHHcCCEEEEEEeCCCceEEEEEEe
Q 001044 730 LVNKMGGEIKVVKKNSPGTLMQLYLL 755 (1177)
Q Consensus 730 IVe~~GG~I~v~S~~g~GT~f~~~Lp 755 (1177)
+++.|||+|.+++ +++||+|++.||
T Consensus 433 ~~~~~~G~~~~~~-~~~G~~~~~~~P 457 (457)
T TIGR01386 433 IMEAHGGRASAES-PDGKTRFILRFP 457 (457)
T ss_pred HHHHCCCEEEEEe-CCCceEEEEecC
Confidence 9999999999999 999999999987
No 24
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=99.97 E-value=1.2e-29 Score=295.77 Aligned_cols=216 Identities=25% Similarity=0.344 Sum_probs=176.5
Q ss_pred HHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceecc
Q 001044 491 SNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFD 570 (1177)
Q Consensus 491 ~~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~l~~~~~d 570 (1177)
..+.+.+|++++||||||||++|.++++++.... .. ....+.+...++..++++++++++.+..........++
T Consensus 133 ~~~~~~~~~~~~sHelrtPL~~i~~~~e~l~~~~--~~----~~~~~~~~~~~l~~~i~~ll~~~r~~~~~~~~~~~~~~ 206 (356)
T PRK10755 133 TLDQERLFTADVAHELRTPLAGIRLHLELLEKQH--HI----DVAPLIARLDQMMHTVEQLLQLARAGQSFSSGHYQTVK 206 (356)
T ss_pred HHHHHHHHHHHhhHhhcChHHHHHHHHHHHHhcc--ch----hHHHHHHHHHHHHHHHHHHHHHHHcccccccccchhhh
Confidence 3344567999999999999999999999876432 11 13345566788999999999999988766666667888
Q ss_pred H-HHHHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccCCC-eEEEEeeccccCCCCCCC
Q 001044 571 L-QKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG-HIIIRGWCENLDTSKNTA 648 (1177)
Q Consensus 571 L-~~li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~G-~v~v~~~~~~~~~~~~~~ 648 (1177)
+ .+++..++..+...+..+++.+.++..+ .+..+.+|+..+++|+.||++||+||+++| .|.+.+..
T Consensus 207 l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~d~~~l~~il~nLi~NA~k~~~~~~~I~I~~~~---------- 275 (356)
T PRK10755 207 LLEDVILPSQDELSEMLEQRQQTLLLPESA-ADITVQGDATLLRLLLRNLVENAHRYSPEGSTITIKLSQ---------- 275 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCeEEeccCC-CceEEEECHHHHHHHHHHHHHHHHhhCCCCCcEEEEEEE----------
Confidence 8 8899998888888888899888774322 244689999999999999999999999755 46654321
Q ss_pred cCCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHHHHH
Q 001044 649 EFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVR 728 (1177)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk 728 (1177)
+...+.|+|+|+|+||+++.++++|++||+.+. +.+|+||||+||+
T Consensus 276 ------------------------------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~----~~~g~GlGL~i~~ 321 (356)
T PRK10755 276 ------------------------------EDGGAVLAVEDEGPGIDESKCGELSKAFVRMDS----RYGGIGLGLSIVS 321 (356)
T ss_pred ------------------------------cCCEEEEEEEECCCCCCHHHHHHhCCCeEeCCC----CCCCcCHHHHHHH
Confidence 112377999999999999999999999998653 3469999999999
Q ss_pred HHHHHcCCEEEEEEeCC-CceEEEEEEecC
Q 001044 729 TLVNKMGGEIKVVKKNS-PGTLMQLYLLLG 757 (1177)
Q Consensus 729 ~IVe~~GG~I~v~S~~g-~GT~f~~~Lpl~ 757 (1177)
++++.|||+|+++|.++ +||+|++.||..
T Consensus 322 ~i~~~~gg~i~i~s~~~~~Gt~~~i~~p~~ 351 (356)
T PRK10755 322 RITQLHHGQFFLQNRQERSGTRAWVWLPKA 351 (356)
T ss_pred HHHHHCCCEEEEEECCCCCeEEEEEEecCC
Confidence 99999999999999998 999999999864
No 25
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=99.97 E-value=5.9e-29 Score=298.92 Aligned_cols=223 Identities=23% Similarity=0.396 Sum_probs=186.6
Q ss_pred HHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccce
Q 001044 488 AEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENT 567 (1177)
Q Consensus 488 ae~~~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~l~~~ 567 (1177)
.++....+.+|++++||||||||++|.+.++++....... ..+..+...+.+|..+++++++++|.+... .+..+
T Consensus 236 l~~~~~~~~~~~~~~shel~tpl~~i~~~~~~~~~~~~~~----~~~~~i~~~~~~l~~~i~~l~~~~~~~~~~-~~~~~ 310 (461)
T PRK09470 236 LERMMTSQQRLLSDISHELRTPLTRLQLATALLRRRQGES----KELERIETEAQRLDSMINDLLVLSRNQQKN-HLERE 310 (461)
T ss_pred HHHHHHHHHHHHHhhhHhhCCHHHHHHHHHHHHhhccCCh----HHHHHHHHHHHHHHHHHHHHHHHHHhhccc-ccccc
Confidence 3344455668999999999999999999999876433221 245668889999999999999999987653 56778
Q ss_pred eccHHHHHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccCCCeEEEEeeccccCCCCCC
Q 001044 568 EFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNT 647 (1177)
Q Consensus 568 ~~dL~~li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~~~ 647 (1177)
.+++.+++++++..+...+..+++.+.++..++ +..+.+|+..|.+++.||++||+||++ +.|.|.+...
T Consensus 311 ~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~l~~~l~nli~NA~~~~~-~~i~i~~~~~-------- 380 (461)
T PRK09470 311 TFKANSLWSEVLEDAKFEAEQMGKSLTVSAPPG-PWPINGNPNALASALENIVRNALRYSH-TKIEVAFSVD-------- 380 (461)
T ss_pred eecHHHHHHHHHHHHHHHHHHCCCeEEEecCCc-ceEEEECHHHHHHHHHHHHHHHHHhCC-CcEEEEEEEE--------
Confidence 899999999999988888888999888874333 446899999999999999999999986 4565554211
Q ss_pred CcCCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHHHH
Q 001044 648 AEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIV 727 (1177)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIv 727 (1177)
...+.|+|.|+|+||+++.++++|+|||+.+....+..+|+||||+||
T Consensus 381 --------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~~~~~g~GlGL~iv 428 (461)
T PRK09470 381 --------------------------------KDGLTITVDDDGPGVPEEEREQIFRPFYRVDEARDRESGGTGLGLAIV 428 (461)
T ss_pred --------------------------------CCEEEEEEEECCCCCCHHHHHHhcCCCccCCcccCCCCCCcchhHHHH
Confidence 123679999999999999999999999998876666778999999999
Q ss_pred HHHHHHcCCEEEEEEeCCCceEEEEEEecC
Q 001044 728 RTLVNKMGGEIKVVKKNSPGTLMQLYLLLG 757 (1177)
Q Consensus 728 k~IVe~~GG~I~v~S~~g~GT~f~~~Lpl~ 757 (1177)
+++++.|||++.+.|.+++||+|++.+|+.
T Consensus 429 ~~~v~~~~G~l~~~s~~~~Gt~~~i~lp~~ 458 (461)
T PRK09470 429 ENAIQQHRGWVKAEDSPLGGLRLTIWLPLY 458 (461)
T ss_pred HHHHHHCCCEEEEEECCCCeEEEEEEeeCC
Confidence 999999999999999999999999999985
No 26
>PRK10490 sensor protein KdpD; Provisional
Probab=99.97 E-value=7.8e-30 Score=328.38 Aligned_cols=224 Identities=25% Similarity=0.432 Sum_probs=188.9
Q ss_pred HHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccee
Q 001044 490 ASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQ-LTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTE 568 (1177)
Q Consensus 490 ~~~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~-l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~l~~~~ 568 (1177)
+..+.|.+|++.+||||||||++|.|++++|..+.. ...+..+.+..|.+...++.+++++++++++++.+.+.++.++
T Consensus 659 e~e~lr~~lla~isHELrtPLt~I~g~~~lL~~~l~~~~~~~~~~~~~i~~~~~~l~~li~~LL~~srl~~~~~~l~~~~ 738 (895)
T PRK10490 659 EREQLRNALLAALSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEIRQQVLNTTRLVNNLLDMARIQSGGFNLRKEW 738 (895)
T ss_pred HHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHhhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccc
Confidence 345667899999999999999999999998864322 2233345677899999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccCCC-eEEEEeeccccCCCCCC
Q 001044 569 FDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG-HIIIRGWCENLDTSKNT 647 (1177)
Q Consensus 569 ~dL~~li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~G-~v~v~~~~~~~~~~~~~ 647 (1177)
+++.+++++++..+......+++.+. ++++.+ .+.+|+.+|.|||.|||+||+||+++| .|.+.+..
T Consensus 739 ~~L~eli~~~l~~l~~~~~~~~i~l~--~~~~~~-~v~~D~~~L~qVL~NLL~NAik~s~~g~~I~I~~~~--------- 806 (895)
T PRK10490 739 LTLEEVVGSALQMLEPGLSGHPINLS--LPEPLT-LIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHV--------- 806 (895)
T ss_pred cCHHHHHHHHHHHHHHHhcCCCEEEE--cCCCCe-EEEECHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEE---------
Confidence 99999999999999888877776654 445544 589999999999999999999999876 45554321
Q ss_pred CcCCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHHHH
Q 001044 648 AEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIV 727 (1177)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIv 727 (1177)
....+.|+|.|+|+|||++.+++||++||+.+.. ...+|+||||+||
T Consensus 807 -------------------------------~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~~--~~~~G~GLGL~Iv 853 (895)
T PRK10490 807 -------------------------------EGERLQLDVWDNGPGIPPGQEQLIFDKFARGNKE--SAIPGVGLGLAIC 853 (895)
T ss_pred -------------------------------eCCEEEEEEEECCCCCCHHHHHHhcCCCccCCCC--CCCCCccHHHHHH
Confidence 1124789999999999999999999999987643 2346999999999
Q ss_pred HHHHHHcCCEEEEEEeCCCceEEEEEEecCC
Q 001044 728 RTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA 758 (1177)
Q Consensus 728 k~IVe~~GG~I~v~S~~g~GT~f~~~Lpl~~ 758 (1177)
|+|++.|||+|+++|.+++||+|+|.||+..
T Consensus 854 k~ive~hGG~I~v~s~~~~Gt~f~i~LPl~~ 884 (895)
T PRK10490 854 RAIVEVHGGTIWAENRPEGGACFRVTLPLET 884 (895)
T ss_pred HHHHHHcCCEEEEEECCCCeEEEEEEeECCC
Confidence 9999999999999999999999999999864
No 27
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=99.97 E-value=9.8e-30 Score=306.58 Aligned_cols=214 Identities=17% Similarity=0.224 Sum_probs=166.0
Q ss_pred HHHHHHHHHhHHhhhhHHHHHHHHHHHhhcCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceecc
Q 001044 493 NYKSQFLANMSHELRTPMAAIIGLLEILKSDDQ--LTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFD 570 (1177)
Q Consensus 493 ~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~--l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~l~~~~~d 570 (1177)
+...++++.++|||||||++|.|++++|..... ..++....+..+... +..++..+.++.. ........++|
T Consensus 274 ~~l~~~~~~~~h~lr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~---~~~~~~~~~~d 347 (494)
T TIGR02938 274 EAIRETLSAAIHRLQGPMNLISAAISVLQRRGDDAGNPASAAMLQQALSA---GREHMEALRQVIP---QSPQEIVVPVN 347 (494)
T ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHH---HHHHHHHHHHhhc---cCccccccccc
Confidence 334567889999999999999999999864311 122333333333333 3334444433322 22344567899
Q ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccCCCe-----EEEEeeccccCCCC
Q 001044 571 LQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGH-----IIIRGWCENLDTSK 645 (1177)
Q Consensus 571 L~~li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~G~-----v~v~~~~~~~~~~~ 645 (1177)
+..++++++..+...+..+++.+.++.+...| .+.+|+.+|+|||.||++||+||++.+. |.+....
T Consensus 348 l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~v~~d~~~l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~~------- 419 (494)
T TIGR02938 348 LNQILRDVITLSTPRLLAAGIVVDWQPAATLP-AILGRELQLRSLFKALVDNAIEAMNIKGWKRRELSITTAL------- 419 (494)
T ss_pred HHHHHHHHHHHhHHHHHhCCCEEEEecCCCCC-eeecCHHHHHHHHHHHHHHHHHHhhccCCCcceEEEEEEe-------
Confidence 99999999999999999999999988876666 5889999999999999999999997662 3332211
Q ss_pred CCCcCCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHH
Q 001044 646 NTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLS 725 (1177)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLa 725 (1177)
....+.|+|.|||+|||++.+++||+|||+.+... .+|+||||+
T Consensus 420 ---------------------------------~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~~~~~~~---~~G~GlGL~ 463 (494)
T TIGR02938 420 ---------------------------------NGDLIVVSILDSGPGIPQDLRYKVFEPFFTTKGGS---RKHIGMGLS 463 (494)
T ss_pred ---------------------------------cCCEEEEEEEeCCCCCCHHHHHHhcCCCcccCCCC---CCCCcccHH
Confidence 12247899999999999999999999999876432 579999999
Q ss_pred HHHHHHHHcCCEEEEEEeCCCceEEEEEEec
Q 001044 726 IVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 756 (1177)
Q Consensus 726 Ivk~IVe~~GG~I~v~S~~g~GT~f~~~Lpl 756 (1177)
|||+||+.|||+|+++|.+|+||+|+|+||+
T Consensus 464 i~~~iv~~~gG~i~~~s~~~~G~~f~i~lp~ 494 (494)
T TIGR02938 464 VAQEIVADHGGIIDLDDDYSEGCRIIVEFRV 494 (494)
T ss_pred HHHHHHHHcCCEEEEEECCCCCEEEEEEecC
Confidence 9999999999999999999999999999985
No 28
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=99.97 E-value=9.3e-28 Score=289.00 Aligned_cols=220 Identities=29% Similarity=0.427 Sum_probs=189.5
Q ss_pred HHHHHHHHHhHHhhhhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHH
Q 001044 493 NYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQ 572 (1177)
Q Consensus 493 ~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~l~~~~~dL~ 572 (1177)
+...+|++.++||||||++.+.+.++.+... ...++..+.+..+...+.++..++++++++++++.+.......++++.
T Consensus 254 ~~~~~~~~~~~h~l~~pl~~i~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 332 (475)
T PRK11100 254 AYVEQYVQTLTHELKSPLAAIRGAAELLQED-PPPEDRARFTGNILTQSARLQQLIDRLLELARLEQRQELEVLEPVALA 332 (475)
T ss_pred HHHHHHHHHhhhhhcCcHHHHHHHHHHHhcc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccceeccHH
Confidence 3456789999999999999999999998753 334566678888999999999999999999999988877788999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccCC-CeEEEEeeccccCCCCCCCcCC
Q 001044 573 KELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSS-GHIIIRGWCENLDTSKNTAEFP 651 (1177)
Q Consensus 573 ~li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~-G~v~v~~~~~~~~~~~~~~~~~ 651 (1177)
+++++++..+...+..+++.+.++.+ +..+.+|...|.+++.||+.||+||+.+ |.|.|.+..
T Consensus 333 ~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~l~~vl~nli~Na~~~~~~~~~i~i~~~~------------- 396 (475)
T PRK11100 333 ALLEELVEAREAQAAAKGITLRLRPD---DARVLGDPFLLRQALGNLLDNAIDFSPEGGTITLSAEV------------- 396 (475)
T ss_pred HHHHHHHHHHHHHHHhCCceEEEeCC---CceEEECHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-------------
Confidence 99999999999999999999988765 3468899999999999999999999965 566665421
Q ss_pred cccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHHHHHHHH
Q 001044 652 TDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 731 (1177)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~IV 731 (1177)
....+.++|.|+|+|||+++++++|++||+.... ....+|+||||+||++++
T Consensus 397 ---------------------------~~~~~~i~i~D~G~Gi~~~~~~~i~~~~~~~~~~-~~~~~~~GlGL~i~~~~~ 448 (475)
T PRK11100 397 ---------------------------DGEQVALSVEDQGPGIPDYALPRIFERFYSLPRP-ANGRKSTGLGLAFVREVA 448 (475)
T ss_pred ---------------------------cCCEEEEEEEECCCCCCHHHHHHHHHHHccCCCC-CCCCCCcchhHHHHHHHH
Confidence 1124779999999999999999999999976532 234579999999999999
Q ss_pred HHcCCEEEEEEeCCCceEEEEEEecC
Q 001044 732 NKMGGEIKVVKKNSPGTLMQLYLLLG 757 (1177)
Q Consensus 732 e~~GG~I~v~S~~g~GT~f~~~Lpl~ 757 (1177)
+.|||+|.++|.++.||+|++.||..
T Consensus 449 ~~~~G~i~i~s~~~~Gt~v~i~lp~~ 474 (475)
T PRK11100 449 RLHGGEVTLRNRPEGGVLATLTLPRH 474 (475)
T ss_pred HHCCCEEEEEEcCCCeEEEEEEeeCC
Confidence 99999999999999999999999864
No 29
>PRK10337 sensor protein QseC; Provisional
Probab=99.97 E-value=2.3e-28 Score=293.59 Aligned_cols=216 Identities=23% Similarity=0.318 Sum_probs=182.2
Q ss_pred HHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceecc
Q 001044 491 SNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFD 570 (1177)
Q Consensus 491 ~~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~l~~~~~d 570 (1177)
..+...+|++++||||||||+.+.+.++.+.......+.....+..+...+.++..++++++.++|++.+......++++
T Consensus 233 ~~~~~~~~~~~~ahelrtpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~ll~~~r~~~~~~~~~~~~~~ 312 (449)
T PRK10337 233 MMVRERRFTSDAAHELRSPLAALKVQTEVAQLSDDDPQARKKALLQLHAGIDRATRLVDQLLTLSRLDSLDNLQDVAEIP 312 (449)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccC
Confidence 33445679999999999999999999998754333333445678889999999999999999999999877666788999
Q ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccCCC-eEEEEeeccccCCCCCCCc
Q 001044 571 LQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG-HIIIRGWCENLDTSKNTAE 649 (1177)
Q Consensus 571 L~~li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~G-~v~v~~~~~~~~~~~~~~~ 649 (1177)
+.+++++++..+...+..+++.+.++.++. +..+.+|+..+.+++.|||+||+||+++| .|.+...
T Consensus 313 l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~l~~vl~Nli~NA~k~~~~~~~i~i~~~------------ 379 (449)
T PRK10337 313 LEDLLQSAVMDIYHTAQQAGIDVRLTLNAH-PVIRTGQPLLLSLLVRNLLDNAIRYSPQGSVVDVTLN------------ 379 (449)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEEecCCC-CceeecCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEE------------
Confidence 999999999999999999999999887654 33578999999999999999999999865 4544321
Q ss_pred CCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHHHHHH
Q 001044 650 FPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRT 729 (1177)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~ 729 (1177)
...++|.|+|+|||+++++++|+|||+.+. +..+|+||||+||++
T Consensus 380 --------------------------------~~~i~i~D~G~Gi~~~~~~~if~~f~~~~~---~~~~g~GlGL~iv~~ 424 (449)
T PRK10337 380 --------------------------------ARNFTVRDNGPGVTPEALARIGERFYRPPG---QEATGSGLGLSIVRR 424 (449)
T ss_pred --------------------------------eeEEEEEECCCCCCHHHHHHhcccccCCCC---CCCCccchHHHHHHH
Confidence 014889999999999999999999998653 234699999999999
Q ss_pred HHHHcCCEEEEEEeCCCceEEEEEE
Q 001044 730 LVNKMGGEIKVVKKNSPGTLMQLYL 754 (1177)
Q Consensus 730 IVe~~GG~I~v~S~~g~GT~f~~~L 754 (1177)
++++|||+|.++|.+++|++|++.|
T Consensus 425 i~~~~gg~l~~~s~~~~G~~~~i~~ 449 (449)
T PRK10337 425 IAKLHGMNVSFGNAPEGGFEAKVSW 449 (449)
T ss_pred HHHHcCCEEEEEecCCCeEEEEEeC
Confidence 9999999999999999999998864
No 30
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=99.97 E-value=2.6e-28 Score=291.65 Aligned_cols=214 Identities=24% Similarity=0.377 Sum_probs=173.3
Q ss_pred HHHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccc
Q 001044 487 KAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELEN 566 (1177)
Q Consensus 487 ~ae~~~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~l~~ 566 (1177)
+.++..+.+..|++++||||||||+.|.++++++..+ .......+.+...+|..++++++++.+.+.. ...
T Consensus 221 ~l~~~~~~~~~~~~~lsHeLrtPL~~i~~~~e~~~~~------~~~~~~~i~~~~~~~~~~i~~~l~~~r~~~~---~~~ 291 (435)
T PRK09467 221 GIKQLEDDRTLLMAGVSHDLRTPLTRIRLATEMMSEE------DGYLAESINKDIEECNAIIEQFIDYLRTGQE---MPM 291 (435)
T ss_pred HHHHHHHHHHHHHHHhhhhccchHHHHHHHHHhcccc------hHHHHHHHHHHHHHHHHHHHHHHHHhcccCC---CCc
Confidence 3455566788899999999999999999999887422 1223445788899999999999999987653 345
Q ss_pred eeccHHHHHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccCCCeEEEEeeccccCCCCC
Q 001044 567 TEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKN 646 (1177)
Q Consensus 567 ~~~dL~~li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~~ 646 (1177)
.++++.+++++++..+. ..+..+.+++++. +..+.+|+..|.+++.||++||+||+ .|.|.|.....
T Consensus 292 ~~~~l~~~~~~~~~~~~----~~~~~i~~~~~~~-~~~~~~~~~~l~~il~NLl~NA~k~~-~~~i~i~~~~~------- 358 (435)
T PRK09467 292 EMADLNALLGEVIAAES----GYEREIETALQPG-PIEVPMNPIAIKRALANLVVNAARYG-NGWIKVSSGTE------- 358 (435)
T ss_pred cccCHHHHHHHHHHHhh----hcCCeEEEecCCC-CceEEECHHHHHHHHHHHHHHHHHhC-CCeEEEEEEec-------
Confidence 68999999999887654 3444555555444 33689999999999999999999998 46676654211
Q ss_pred CCcCCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHHH
Q 001044 647 TAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSI 726 (1177)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaI 726 (1177)
...+.|+|.|+|+||+++.++++|+|||+++... +.+|+||||+|
T Consensus 359 ---------------------------------~~~~~i~V~D~G~Gi~~~~~~~~~~~f~~~~~~~--~~~g~GlGL~i 403 (435)
T PRK09467 359 ---------------------------------GKRAWFQVEDDGPGIPPEQLKHLFQPFTRGDSAR--GSSGTGLGLAI 403 (435)
T ss_pred ---------------------------------CCEEEEEEEecCCCcCHHHHHHhcCCcccCCCCC--CCCCeehhHHH
Confidence 1247799999999999999999999999987543 34799999999
Q ss_pred HHHHHHHcCCEEEEEEeCCCceEEEEEEecC
Q 001044 727 VRTLVNKMGGEIKVVKKNSPGTLMQLYLLLG 757 (1177)
Q Consensus 727 vk~IVe~~GG~I~v~S~~g~GT~f~~~Lpl~ 757 (1177)
|+++++.|||+|.+.+.+++|++|++.||+.
T Consensus 404 v~~i~~~~~g~l~i~~~~~~G~~~~i~lp~~ 434 (435)
T PRK09467 404 VKRIVDQHNGKVELGNSEEGGLSARAWLPLT 434 (435)
T ss_pred HHHHHHHCCCEEEEEECCCCcEEEEEEEeCC
Confidence 9999999999999999999999999999974
No 31
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=99.96 E-value=3.1e-28 Score=282.03 Aligned_cols=229 Identities=27% Similarity=0.388 Sum_probs=196.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Q 001044 485 RRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSD--DQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKM 562 (1177)
Q Consensus 485 ~~~ae~~~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~--~~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l 562 (1177)
++..|++|.....|...+||+||.||+.|.+++++|.+. +.++++.++++..+.+.+.++.+||++++.+|++..-.
T Consensus 514 ~r~lersn~el~~f~yv~sHdlqePl~~I~~~a~lL~~~~~~~~d~~~~~~i~~~~~~~~~~~~lidd~l~~s~l~~~~- 592 (750)
T COG4251 514 RRELERSNAELRAFAYVASHDLQEPLRQISNYAQLLSERYSDALDEEAKEFITFISRLTSLMQQLIDDLLTYSKLGLTE- 592 (750)
T ss_pred HHHHhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc-
Confidence 456678888888999999999999999999999999876 67888999999999999999999999999999996554
Q ss_pred cccceeccHHHHHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccCCCeEEEEeeccccC
Q 001044 563 ELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLD 642 (1177)
Q Consensus 563 ~l~~~~~dL~~li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~ 642 (1177)
...++.|+.+++.+++..........++++.+. + +| .+.+|+.++.|++.|||.|||||..++.-.|.++...
T Consensus 593 -~~l~~td~~~vv~~vl~~l~~ri~dtgaei~i~--~-lp-~v~~d~~~l~qv~~NLi~Naik~~~~e~~~i~I~~~r-- 665 (750)
T COG4251 593 -APLQPTDVQKVVDKVLLELSQRIADTGAEIRIA--P-LP-VVAADATQLGQVFQNLIANAIKFGGPENPDIEISAER-- 665 (750)
T ss_pred -CCCCCcchHHHHHHHHHhcccccccccceEEec--c-cc-eeecCHHHHHHHHHHHHhhheecCCCCCCceEEeeec--
Confidence 445588999999999999999999999988764 3 56 4889999999999999999999987653222222111
Q ss_pred CCCCCCcCCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccch
Q 001044 643 TSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 722 (1177)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGL 722 (1177)
....++|.|.|+|+||+++..++||..|.|... ..++.|||+
T Consensus 666 ------------------------------------~ed~~t~sV~dng~Gi~~a~~~riF~iFqRl~s--~~~y~gtG~ 707 (750)
T COG4251 666 ------------------------------------QEDEWTFSVRDNGIGIDPAYFERIFVIFQRLHS--RDEYLGTGL 707 (750)
T ss_pred ------------------------------------cCCceEEEecCCCCCcCHHHHHHHHHHHHhcCc--hhhhcCCCc
Confidence 112367999999999999999999999998753 446789999
Q ss_pred hHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCCC
Q 001044 723 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGAS 759 (1177)
Q Consensus 723 GLaIvk~IVe~~GG~I~v~S~~g~GT~f~~~Lpl~~~ 759 (1177)
||+|||+|++.|+|+|+|+|++|+|+||.|++|....
T Consensus 708 GL~I~kkI~e~H~G~i~vEs~~gEgsTF~f~lp~~~~ 744 (750)
T COG4251 708 GLAICKKIAERHQGRIWVESTPGEGSTFYFTLPVGGE 744 (750)
T ss_pred cHHHHHHHHHHhCceEEEeecCCCceeEEEEeecCCc
Confidence 9999999999999999999999999999999998654
No 32
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=99.96 E-value=5.3e-28 Score=260.56 Aligned_cols=221 Identities=24% Similarity=0.389 Sum_probs=177.7
Q ss_pred HHHHHHHHhHHhhhhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHHH
Q 001044 494 YKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQK 573 (1177)
Q Consensus 494 ~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~l~~~~~dL~~ 573 (1177)
+-+.++.+++||||+||.+|.|.+++|.... .++..+++.+.|.++++||.+|++.+.-|+-- -..+..++|+.+
T Consensus 131 a~~~L~r~LAHEIKNPL~GiRGAAQLLe~~l-pd~~~~~lt~lIieE~DRl~~LVDRme~~~~~----rp~~r~~~NIH~ 205 (363)
T COG3852 131 AVKGLVRGLAHEIKNPLGGIRGAAQLLERAL-PDEALRELTQLIIEEADRLRNLVDRLEVLGPQ----RPGDRVPVNIHE 205 (363)
T ss_pred HHHHHHHHHHHHhcCcccchhhHHHHHHhhC-CChHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----CCcccccchHHH
Confidence 4457899999999999999999999997543 23337788888999999999999999777643 244556899999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccC---C--CeEEEEeeccccCCCCCCC
Q 001044 574 ELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTS---S--GHIIIRGWCENLDTSKNTA 648 (1177)
Q Consensus 574 li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~---~--G~v~v~~~~~~~~~~~~~~ 648 (1177)
+++.+.......+ ..++.+.-+.++.+|. +.+|+++|.|+|.||+.||+..-. . |.|+++.+..-.
T Consensus 206 VLerV~~lv~~e~-~~~i~l~rdYDPSLP~-v~~d~DqliQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q------- 276 (363)
T COG3852 206 VLERVRALVEAEF-ADNVRLIRDYDPSLPE-VLGDRDQLIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQ------- 276 (363)
T ss_pred HHHHHHHHHhccc-CCceEEeecCCCCCcc-ccCCHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceE-------
Confidence 9999887654443 5678999999999985 899999999999999999999864 2 777776532100
Q ss_pred cCCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHHHHH
Q 001044 649 EFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVR 728 (1177)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk 728 (1177)
+.. .....+..+.++|.|||+|||++-++++|.||..+ +.+||||||+|++
T Consensus 277 ------------~~i-----------~g~r~rl~l~leViDNGPGVP~~L~~~lF~P~Vs~------r~~GsGLGLala~ 327 (363)
T COG3852 277 ------------LTI-----------AGTRYRLALPLEVIDNGPGVPPDLQDHLFYPMVSG------REGGTGLGLALAQ 327 (363)
T ss_pred ------------EEc-----------cCceeEeeeeeEEecCCCCCChHHhhhcccccccc------CCCCccccHHHHH
Confidence 000 01112345778999999999999999999999843 4579999999999
Q ss_pred HHHHHcCCEEEEEEeCCCceEEEEEEecCC
Q 001044 729 TLVNKMGGEIKVVKKNSPGTLMQLYLLLGA 758 (1177)
Q Consensus 729 ~IVe~~GG~I~v~S~~g~GT~f~~~Lpl~~ 758 (1177)
+|+..|||.|+++|.+| .|+|++.+|+..
T Consensus 328 ~li~qH~G~Ie~~S~Pg-~T~FrvllP~~~ 356 (363)
T COG3852 328 NLIDQHGGKIEFDSWPG-RTVFRVLLPIRK 356 (363)
T ss_pred HHHHhcCCEEEEeccCC-ceEEEEEeeccc
Confidence 99999999999999987 599999999864
No 33
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=99.96 E-value=1.2e-27 Score=273.25 Aligned_cols=218 Identities=30% Similarity=0.476 Sum_probs=188.7
Q ss_pred HHHHHHHhHHhhhhHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHHH
Q 001044 495 KSQFLANMSHELRTPMAAIIGLLEILKSD-DQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQK 573 (1177)
Q Consensus 495 Ks~Fla~~SHELRTPL~~I~G~~elL~~~-~~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~l~~~~~dL~~ 573 (1177)
+.+|++.++|||||||++|.++++.+... ....++..+++..|...+.+|..++++++++++++.+......+++++.+
T Consensus 114 ~~~~~~~l~h~l~~pL~~i~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~l~~ 193 (333)
T TIGR02966 114 RRDFVANVSHELRTPLTVLRGYLETLADGPDEDPEEWNRALEIMLEQSQRMQSLVEDLLTLSRLESAASPLEDEPVDMPA 193 (333)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCHHH
Confidence 45799999999999999999999988654 33445566778889999999999999999999999988888899999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccCCC-eEEEEeeccccCCCCCCCcCCc
Q 001044 574 ELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG-HIIIRGWCENLDTSKNTAEFPT 652 (1177)
Q Consensus 574 li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~G-~v~v~~~~~~~~~~~~~~~~~~ 652 (1177)
++..++..+...+..+++.+.+.++. +..+.+|+..|.+||.||+.||+||++.+ .|.|.+..
T Consensus 194 ~i~~~~~~~~~~~~~~~i~i~~~~~~--~~~~~~d~~~l~~vl~nll~Nai~~~~~~~~i~i~~~~-------------- 257 (333)
T TIGR02966 194 LLDHLRDEAEALSQGKNHQITFEIDG--GVDVLGDEDELRSAFSNLVSNAIKYTPEGGTITVRWRR-------------- 257 (333)
T ss_pred HHHHHHHHHHHHHHHcCcEEEEcCCC--CceEEECHHHHHHHHHHHHHHhheeCCCCCeEEEEEEE--------------
Confidence 99999999999999999999888733 34689999999999999999999998754 45554321
Q ss_pred ccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHHHHHHHHH
Q 001044 653 DRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVN 732 (1177)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~IVe 732 (1177)
.+ ..+.|.|.|+|+|||++.++++|++|++.+...+...+|+||||+||+++++
T Consensus 258 ------------------------~~--~~~~i~i~d~G~gi~~~~~~~if~~~~~~~~~~~~~~~g~glGL~~~~~~~~ 311 (333)
T TIGR02966 258 ------------------------DG--GGAEFSVTDTGIGIAPEHLPRLTERFYRVDKSRSRDTGGTGLGLAIVKHVLS 311 (333)
T ss_pred ------------------------cC--CEEEEEEEecCCCCCHHHHhhhccCceecCcccccCCCCCcccHHHHHHHHH
Confidence 11 1377999999999999999999999998776555566899999999999999
Q ss_pred HcCCEEEEEEeCCCceEEEEEE
Q 001044 733 KMGGEIKVVKKNSPGTLMQLYL 754 (1177)
Q Consensus 733 ~~GG~I~v~S~~g~GT~f~~~L 754 (1177)
.|||+|++.|.+++||+|+++|
T Consensus 312 ~~gG~i~~~s~~~~Gt~~~i~l 333 (333)
T TIGR02966 312 RHHARLEIESELGKGSTFSFIF 333 (333)
T ss_pred HCCCEEEEEecCCCCeEEEEEC
Confidence 9999999999999999999874
No 34
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=99.95 E-value=2.7e-26 Score=266.16 Aligned_cols=217 Identities=24% Similarity=0.409 Sum_probs=170.3
Q ss_pred HHHHHHHHhHHhhhhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHHH
Q 001044 494 YKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQK 573 (1177)
Q Consensus 494 ~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~l~~~~~dL~~ 573 (1177)
...+|++.+||||||||++|.|+++++.+.. ..++..+++..+.+++.+|..++++++++.+... ...+++..
T Consensus 129 ~~~~~~~~iaHelr~pL~~i~~~~~~l~~~~-~~~~~~~~~~~i~~~~~~l~~lv~~l~~~~~~~~------~~~~~l~~ 201 (348)
T PRK11073 129 AARDLVRGLAHEIKNPLGGLRGAAQLLSKAL-PDPALTEYTKVIIEQADRLRNLVDRLLGPQRPGT------HVTESIHK 201 (348)
T ss_pred HHHHHHHhhhHhhcChHHHHHHHHHHhhhcC-CChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC------CccccHHH
Confidence 3467999999999999999999999986533 3456667888899999999999999998765432 34678999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhcc-C-CCeEEEEeeccccCCCCCCCcCC
Q 001044 574 ELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFT-S-SGHIIIRGWCENLDTSKNTAEFP 651 (1177)
Q Consensus 574 li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT-~-~G~v~v~~~~~~~~~~~~~~~~~ 651 (1177)
+++.+...+.... .+++.+.++.+++.+ .+.+|+.+|.||+.||++||+||+ + .|.|.+.........
T Consensus 202 ~~~~~~~~~~~~~-~~~i~i~~~~~~~~~-~i~~d~~~l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~~-------- 271 (348)
T PRK11073 202 VAERVVQLVSLEL-PDNVRLIRDYDPSLP-ELAHDPDQIEQVLLNIVRNALQALGPEGGTITLRTRTAFQLT-------- 271 (348)
T ss_pred HHHHHHHHHhhhc-cCCcEEEEecCCCCC-ceeeCHHHHHHHHHHHHHHHHHHhccCCCeEEEEEccccccc--------
Confidence 9999888776554 467888777766555 488999999999999999999997 3 455655432110000
Q ss_pred cccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHHHHHHHH
Q 001044 652 TDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 731 (1177)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~IV 731 (1177)
.........+.++|.|+|+||+++.++++|+|||+. +.+|+||||+|||++|
T Consensus 272 ----------------------~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~~~~~~------~~~g~GlGL~i~~~iv 323 (348)
T PRK11073 272 ----------------------LHGERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSG------REGGTGLGLSIARNLI 323 (348)
T ss_pred ----------------------cCCccCCceEEEEEEeCCCCCCHHHHhhccCCcccC------CCCCccCCHHHHHHHH
Confidence 000011124679999999999999999999999853 2469999999999999
Q ss_pred HHcCCEEEEEEeCCCceEEEEEEec
Q 001044 732 NKMGGEIKVVKKNSPGTLMQLYLLL 756 (1177)
Q Consensus 732 e~~GG~I~v~S~~g~GT~f~~~Lpl 756 (1177)
+.|||+|+++|.+| ||+|+++||+
T Consensus 324 ~~~gG~i~~~s~~~-~~~f~i~lP~ 347 (348)
T PRK11073 324 DQHSGKIEFTSWPG-HTEFSVYLPI 347 (348)
T ss_pred HHcCCeEEEEecCC-ceEEEEEEec
Confidence 99999999999887 5999999996
No 35
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=99.94 E-value=5.1e-25 Score=272.07 Aligned_cols=213 Identities=25% Similarity=0.509 Sum_probs=182.6
Q ss_pred HHHHHHHhHHhhhhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHHHH
Q 001044 495 KSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKE 574 (1177)
Q Consensus 495 Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~l~~~~~dL~~l 574 (1177)
..+|+++++|||||||+.|.|+++++... ..+++..+.+..|.+.+.+|..++++++++++.+.. ...++++..+
T Consensus 390 l~~~~~~~~hel~~~l~~i~~~~~~~~~~-~~~~~~~~~l~~i~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~ 464 (607)
T PRK11360 390 LGELVAGVAHEIRNPLTAIRGYVQIWRQQ-TSDPPSQEYLSVVLREVDRLNKVIDQLLEFSRPRES----QWQPVSLNAL 464 (607)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcC----ccceecHHHH
Confidence 56799999999999999999999998654 455667788899999999999999999999987643 3468999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccC-CCeEEEEeeccccCCCCCCCcCCcc
Q 001044 575 LEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTS-SGHIIIRGWCENLDTSKNTAEFPTD 653 (1177)
Q Consensus 575 i~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~-~G~v~v~~~~~~~~~~~~~~~~~~~ 653 (1177)
++++...+......+++.+.++++++.+ .+.+|+..|.|++.||+.||+||++ .|.|.|.+...
T Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~nli~na~~~~~~~~~i~v~~~~~-------------- 529 (607)
T PRK11360 465 VEEVLQLFQTAGVQARVDFETELDNELP-PIWADPELLKQVLLNILINAVQAISARGKIRIRTWQY-------------- 529 (607)
T ss_pred HHHHHHHHHHhhhccCcEEEEEcCCCCC-eEEECHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEc--------------
Confidence 9999999988888899999888776655 4789999999999999999999976 45666654211
Q ss_pred cccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHHHHHHHHHH
Q 001044 654 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNK 733 (1177)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~IVe~ 733 (1177)
++ ..+.|+|+|+|+|||++.++++|+||++.+ .+|+||||++||++|++
T Consensus 530 ------------------------~~-~~~~i~v~D~G~G~~~~~~~~~f~~~~~~~------~~g~glGL~~~~~~~~~ 578 (607)
T PRK11360 530 ------------------------SD-GQVAVSIEDNGCGIDPELLKKIFDPFFTTK------AKGTGLGLALSQRIINA 578 (607)
T ss_pred ------------------------CC-CEEEEEEEeCCCCCCHHHHhhhcCCceeCC------CCCCchhHHHHHHHHHH
Confidence 11 117899999999999999999999999643 35899999999999999
Q ss_pred cCCEEEEEEeCCCceEEEEEEecCC
Q 001044 734 MGGEIKVVKKNSPGTLMQLYLLLGA 758 (1177)
Q Consensus 734 ~GG~I~v~S~~g~GT~f~~~Lpl~~ 758 (1177)
|||+|+++|.+|+||+|+|+||+..
T Consensus 579 ~~G~i~~~s~~~~Gt~~~i~lp~~~ 603 (607)
T PRK11360 579 HGGDIEVESEPGVGTTFTLYLPINP 603 (607)
T ss_pred cCCEEEEEEcCCCceEEEEEecCCC
Confidence 9999999999999999999999853
No 36
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.94 E-value=1.1e-24 Score=246.21 Aligned_cols=217 Identities=40% Similarity=0.602 Sum_probs=181.5
Q ss_pred HHHHHHHHhHHhhhhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-ccccceeccHH
Q 001044 494 YKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGK-MELENTEFDLQ 572 (1177)
Q Consensus 494 ~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~-l~l~~~~~dL~ 572 (1177)
.+..|++.++||+|||++++.+.++.+... . .......+..+.....++..++++++++++.+.+. .......+++.
T Consensus 114 ~~~~~~~~~~hel~~pl~~i~~~~~~~~~~-~-~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 191 (336)
T COG0642 114 AKREFLANISHELRTPLTAIRGLLELLLEG-L-LDPQRELLEIIEEEAERLLRLVNDLLDLSRLEAGTKLKLLLELVDLA 191 (336)
T ss_pred HHHHHHHhhhhhhcCcHHHHHHHHHHhccC-C-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCCcCHH
Confidence 377899999999999999999999865433 1 12255677778889999999999999999998863 44457788899
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccCCCeEEEEeeccccCCCCCCCcCCc
Q 001044 573 KELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPT 652 (1177)
Q Consensus 573 ~li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~~~~~~~~ 652 (1177)
.++++++..+...+..+++.+....+ .+..+.+|+.++.|+|.||++||+||++.+.|.|.+...
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~l~~vl~nLi~NAi~~~~~~~i~i~~~~~------------- 256 (336)
T COG0642 192 ELLEEVVRLLAPLAQEKGIELAVDLP--ELPYVLGDPERLRQVLVNLLSNAIKYTPGGEITISVRQD------------- 256 (336)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEecC--CCceEeeCHHHHHHHHHHHHHHHhccCCCCeEEEEEEec-------------
Confidence 99999999998888888888876554 234688999999999999999999999966676654211
Q ss_pred ccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHHHHHHHHH
Q 001044 653 DRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVN 732 (1177)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~IVe 732 (1177)
++ .+.++|.|+|+||+++.++++|++|++.+... +|+||||+||+++++
T Consensus 257 -------------------------~~--~i~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~----~g~GlGL~i~~~~~~ 305 (336)
T COG0642 257 -------------------------DE--QVTISVEDTGPGIPEEELERIFEPFFRTDKSR----SGTGLGLAIVKRIVE 305 (336)
T ss_pred -------------------------CC--eEEEEEEcCCCCCCHHHHHHhccCeeccCCCC----CCCCccHHHHHHHHH
Confidence 11 57899999999999999999999999876532 299999999999999
Q ss_pred HcCCEEEEEEeCCCceEEEEEEecCC
Q 001044 733 KMGGEIKVVKKNSPGTLMQLYLLLGA 758 (1177)
Q Consensus 733 ~~GG~I~v~S~~g~GT~f~~~Lpl~~ 758 (1177)
.|||+|.++|.++.||+|++++|...
T Consensus 306 ~~~g~i~~~~~~~~Gt~~~i~lP~~~ 331 (336)
T COG0642 306 LHGGTISVESEPGKGTTFTIRLPLAP 331 (336)
T ss_pred HcCCEEEEEecCCCceEEEEEEeccc
Confidence 99999999999999999999999864
No 37
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=99.92 E-value=1.2e-23 Score=265.92 Aligned_cols=203 Identities=24% Similarity=0.365 Sum_probs=161.8
Q ss_pred HHHHHHHhHHhhhhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHHHH
Q 001044 495 KSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKE 574 (1177)
Q Consensus 495 Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~l~~~~~dL~~l 574 (1177)
..++.+.++||||||++.+.+.++.+......++...+.++.+.++.++|.++++++.+.. ...+..++++.++
T Consensus 475 ~~~~~a~i~HdLrn~l~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~~rl~~ll~~l~~~~------~~~~~~~~~l~~l 548 (679)
T TIGR02916 475 FNRMSAFVVHDLKNLVAQLSLLLRNAERHKDNPEFQDDMLETVENAVNRMKKLLAQLRSKG------LEEEKLCVDLVDL 548 (679)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------cccCCccccHHHH
Confidence 3568899999999999999998887754443334455667788899999999888775432 2556678999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccCC-CeEEEEeeccccCCCCCCCcCCcc
Q 001044 575 LEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSS-GHIIIRGWCENLDTSKNTAEFPTD 653 (1177)
Q Consensus 575 i~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~-G~v~v~~~~~~~~~~~~~~~~~~~ 653 (1177)
++++.+.+... ...+++. ++++ ..+.+|+.++.||+.||++||+||+++ |.|.|.+...
T Consensus 549 l~~~~~~~~~~--~~~~~l~--~~~~--~~v~~d~~~l~~vl~nLl~NAik~~~~~~~I~I~~~~~-------------- 608 (679)
T TIGR02916 549 LRRAIASKRAQ--GPRPEVS--IDTD--LSVRADRERLERVLGHLVQNALEATPGEGRVAIRVERE-------------- 608 (679)
T ss_pred HHHHHHHhhhh--cCCceEE--eCCC--ceEEECHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEEc--------------
Confidence 99998876543 2333433 3333 368999999999999999999999964 5677654311
Q ss_pred cccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhh-HhhhhcccccCCCCCCCCCCccchhHHHHHHHHH
Q 001044 654 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSK-WETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVN 732 (1177)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~-l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~IVe 732 (1177)
...+.|+|.|+|+|||++. .+++|+||++.+ .+|+||||++||++++
T Consensus 609 --------------------------~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~------~~G~GLGL~i~~~iv~ 656 (679)
T TIGR02916 609 --------------------------CGAARIEIEDSGCGMSPAFIRERLFKPFDTTK------GAGMGIGVYECRQYVE 656 (679)
T ss_pred --------------------------CCEEEEEEEEcCCCcChHHHHHhcCCCCCCCC------CCCcchhHHHHHHHHH
Confidence 1247799999999999999 999999998643 2699999999999999
Q ss_pred HcCCEEEEEEeCCCceEEEEEEe
Q 001044 733 KMGGEIKVVKKNSPGTLMQLYLL 755 (1177)
Q Consensus 733 ~~GG~I~v~S~~g~GT~f~~~Lp 755 (1177)
.|||+|+++|.+|+||+|+++||
T Consensus 657 ~~gG~i~v~s~~g~Gt~f~i~LP 679 (679)
T TIGR02916 657 EIGGRIEVESTPGQGTIFTLVLP 679 (679)
T ss_pred HcCCEEEEEecCCCceEEEEEeC
Confidence 99999999999999999999987
No 38
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=99.91 E-value=9.7e-22 Score=241.37 Aligned_cols=194 Identities=20% Similarity=0.298 Sum_probs=135.5
Q ss_pred HHHHHHhHHhhhhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHHHHH
Q 001044 496 SQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKEL 575 (1177)
Q Consensus 496 s~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~l~~~~~dL~~li 575 (1177)
.++++.++||+||||++|.|++++... ++..+++.. .+.+....++++++..+ . .++
T Consensus 340 ~~~l~~~sHel~npL~~I~g~~~~~~~-----~~~~~~~~~---~~~~~~~~~~~~~~~~~----------~-----~~~ 396 (542)
T PRK11086 340 ADALRAQSHEFMNKLHVILGLLHLKSY-----DQLEDYILK---TANNYQEEIGSLLGKIK----------S-----PVI 396 (542)
T ss_pred HHHHHhhchhhcCHHHHHHHHHHhCch-----HHHHHHHHH---HHHHHHHHHHHHHHhcc----------C-----HHH
Confidence 457788999999999999999986421 122223222 22222233333332111 0 112
Q ss_pred HHHHHHHHHHHhcCCcEEEEEcCCCCCce-EEeCHHHHHHHHHHHHhhHhhccC---CCeEEEEeeccccCCCCCCCcCC
Q 001044 576 EELVDMFSVQCSNHNVETVLDLSDNIPRN-VRGDPGRVFQIFSNLINNSIKFTS---SGHIIIRGWCENLDTSKNTAEFP 651 (1177)
Q Consensus 576 ~~vv~~~~~~a~~k~I~l~~~i~~~~p~~-V~gD~~rL~QIL~NLL~NAIKfT~---~G~v~v~~~~~~~~~~~~~~~~~ 651 (1177)
...+......+.++++.+.++.++.++.. ...+...|.|||.||++||+||+. .|.|.+....
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~------------- 463 (542)
T PRK11086 397 AGFLLGKISRARELGITLIISEDSQLPDSGDEDQVHELITILGNLIENALEAVGGEEGGEISVSLHY------------- 463 (542)
T ss_pred HHHHHHHHHHHHHcCCEEEEeCCCCCCcccccccHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEE-------------
Confidence 22222233456778888888776555432 123445899999999999999963 3556654321
Q ss_pred cccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHHHHHHHH
Q 001044 652 TDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 731 (1177)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~IV 731 (1177)
....+.|+|.|+|+|||++.++++|+||+.. +.+|+||||+|||++|
T Consensus 464 ---------------------------~~~~~~i~V~D~G~gi~~~~~~~iF~~~~~~------~~~g~GlGL~iv~~iv 510 (542)
T PRK11086 464 ---------------------------RNGWLHCEVSDDGPGIAPDEIDAIFDKGYST------KGSNRGVGLYLVKQSV 510 (542)
T ss_pred ---------------------------cCCEEEEEEEECCCCCCHHHHHHHHhCCCcc------CCCCCcCcHHHHHHHH
Confidence 1124779999999999999999999999843 2469999999999999
Q ss_pred HHcCCEEEEEEeCCCceEEEEEEecCC
Q 001044 732 NKMGGEIKVVKKNSPGTLMQLYLLLGA 758 (1177)
Q Consensus 732 e~~GG~I~v~S~~g~GT~f~~~Lpl~~ 758 (1177)
+.|||+|+++|.+|+||+|+|+||+..
T Consensus 511 ~~~~G~i~v~s~~~~G~~f~i~lP~~~ 537 (542)
T PRK11086 511 ENLGGSIAVESEPGVGTQFFVQIPWDG 537 (542)
T ss_pred HHcCCEEEEEeCCCCcEEEEEEEeCCC
Confidence 999999999999999999999999864
No 39
>PRK13560 hypothetical protein; Provisional
Probab=99.91 E-value=1.4e-23 Score=269.64 Aligned_cols=206 Identities=17% Similarity=0.184 Sum_probs=147.9
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccc
Q 001044 486 RKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELE 565 (1177)
Q Consensus 486 ~~ae~~~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~l~ 565 (1177)
++++++.+.|++|+++|||||||||++|.|+++++.... .+++....+..+......|..+++.++.. ..
T Consensus 596 ~~L~~a~~~~~~~l~~isHelrnpL~~I~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------~~ 665 (807)
T PRK13560 596 EKIKAALTEKEVLLKEIHHRVKNNLQIISSLLDLQAEKL-HDEEAKCAFAESQDRICAMALAHEKLYQS---------ED 665 (807)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhChHHHHHHHHHHhhhhc-CCHHHHHHHHHHHHHHHHHHHHHHHHhcc---------cc
Confidence 344555677899999999999999999999999876433 34444445444444444444444433321 23
Q ss_pred ceeccHHHHHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccCC----CeEEEEeecccc
Q 001044 566 NTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSS----GHIIIRGWCENL 641 (1177)
Q Consensus 566 ~~~~dL~~li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~----G~v~v~~~~~~~ 641 (1177)
..++++.+++++++..+......+...+.+.++.+.+.....+...+.|||.||++||+||+.. |.|.+....
T Consensus 666 ~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~NLl~NAik~~~~~~~~~~i~i~~~~--- 742 (807)
T PRK13560 666 LADIDFLDYIESLTAHLKNSFAIDFGRIDCKIDADDGCLDIDKAIPCGLIISELLSNALKHAFPDGAAGNIKVEIRE--- 742 (807)
T ss_pred chhccHHHHHHHHHHHHHHHhccccCceEEEEecCccccccccccchHHHHHHHHHHHHHhhccCCCCceEEEEEEE---
Confidence 4578999999999998887776666555555544433333455667899999999999999843 456554321
Q ss_pred CCCCCCCcCCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccc
Q 001044 642 DTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTG 721 (1177)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtG 721 (1177)
.+...+.|+|+|||+|||++.. ...|+|
T Consensus 743 ------------------------------------~~~~~v~i~V~D~G~GI~~~~~----------------~~~~~g 770 (807)
T PRK13560 743 ------------------------------------QGDGMVNLCVADDGIGLPAGFD----------------FRAAET 770 (807)
T ss_pred ------------------------------------cCCCEEEEEEEeCCCcCCcccc----------------ccccCC
Confidence 1123578999999999998731 123678
Q ss_pred hhHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCC
Q 001044 722 LGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA 758 (1177)
Q Consensus 722 LGLaIvk~IVe~~GG~I~v~S~~g~GT~f~~~Lpl~~ 758 (1177)
|||+|||+||+.|||+|+|+|. +||+|+|+||+..
T Consensus 771 LGLai~~~iv~~~gG~I~v~S~--~Gt~F~i~lP~~~ 805 (807)
T PRK13560 771 LGLQLVCALVKQLDGEIALDSR--GGARFNIRFPMSP 805 (807)
T ss_pred ccHHHHHHHHHHcCCEEEEEcC--CceEEEEEecCCC
Confidence 9999999999999999999984 7999999999853
No 40
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=99.90 E-value=7.5e-22 Score=229.08 Aligned_cols=206 Identities=19% Similarity=0.336 Sum_probs=165.3
Q ss_pred HHHHhHHhhhhHHHHHHHHHHHhhcC--CCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHH
Q 001044 498 FLANMSHELRTPMAAIIGLLEILKSD--DQLTN---EQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQ 572 (1177)
Q Consensus 498 Fla~~SHELRTPL~~I~G~~elL~~~--~~l~~---e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~l~~~~~dL~ 572 (1177)
-..-++||||+||+-|+-.+|-|... ...++ .-.+..+.|.+....+.+||++.-+|+|+-. +..++.||.
T Consensus 489 VArRIAHEIKNPLTPIQLSAERl~rk~gk~i~eDrevfd~~tdTIirQV~dI~rMVdeF~afARmP~----p~~e~~dL~ 564 (712)
T COG5000 489 VARRIAHEIKNPLTPIQLSAERLLRKLGKEIDEDREVFDRCTDTIIRQVEDIKRMVDEFRAFARMPA----PKLEKSDLR 564 (712)
T ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----CCCCcchHH
Confidence 45678999999999999999988643 22333 2234677799999999999999999999754 456689999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccCCC-------e-EEEEeeccccCCC
Q 001044 573 KELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG-------H-IIIRGWCENLDTS 644 (1177)
Q Consensus 573 ~li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~G-------~-v~v~~~~~~~~~~ 644 (1177)
+++.+++..+... ..++.+..++..+ |....+|+..|.|+|.|||.||..+-..- . +++.
T Consensus 565 ~ll~e~~~L~e~~--~~~i~f~~e~g~e-pl~~~~D~~~l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~--------- 632 (712)
T COG5000 565 ALLKEVSFLYEIG--NDHIVFAAEFGGE-PLIGMADATLLGQVFGNLLKNAAEAIEAVEAEERRTALIRVS--------- 632 (712)
T ss_pred HHHHHHHHHHhcc--CCCeEEEeecCCC-ceeeecCHHHHHHHHHHHHHhHHHHhhhcccccCCcceEEEE---------
Confidence 9999999876543 4577788887766 77778899999999999999999986421 1 1111
Q ss_pred CCCCcCCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhH
Q 001044 645 KNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGL 724 (1177)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGL 724 (1177)
..+....+++.|.|||.|.|.|.++++||||.. .+..||||||
T Consensus 633 -------------------------------~~~~~g~i~v~V~DNGkG~p~e~r~r~~EPYvT------tr~KGTGLGL 675 (712)
T COG5000 633 -------------------------------LDDADGRIVVDVIDNGKGFPRENRHRALEPYVT------TREKGTGLGL 675 (712)
T ss_pred -------------------------------EecCCCeEEEEEecCCCCCChHHhhhhccCcee------cccccccccH
Confidence 112233588999999999999999999999973 2456999999
Q ss_pred HHHHHHHHHcCCEEEEEEeC-CCceEEEEEEec
Q 001044 725 SIVRTLVNKMGGEIKVVKKN-SPGTLMQLYLLL 756 (1177)
Q Consensus 725 aIvk~IVe~~GG~I~v~S~~-g~GT~f~~~Lpl 756 (1177)
+|||+|||-|||.|++.+.+ -.|.++++.||.
T Consensus 676 AiVKkIvEeHGG~leL~da~d~~GA~i~i~fp~ 708 (712)
T COG5000 676 AIVKKIVEEHGGRLELHNAPDFDGAMIRIKFPL 708 (712)
T ss_pred HHHHHHHHhcCCeEEecCCCCCCCcEEEEEccc
Confidence 99999999999999999984 469999999986
No 41
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=99.89 E-value=2.9e-21 Score=234.84 Aligned_cols=196 Identities=16% Similarity=0.290 Sum_probs=153.3
Q ss_pred HHHHHHHHHHhHHhhhhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccH
Q 001044 492 NNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDL 571 (1177)
Q Consensus 492 ~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~l~~~~~dL 571 (1177)
.+.+.++.+.+.||+||||++|.+.++++++....+++..+..+.|.+.+.++.++++++++..+- ...+++++
T Consensus 299 e~~r~~ia~elhdeI~~pLtaI~~~a~ll~~~~~~~~~~~~~~~~I~~~~~~l~~~vr~LL~~lr~------~~l~~~~L 372 (495)
T PRK11644 299 ESVRRDVARELHDEIGQTITAIRTQAGIIKRLAADNASVKQSAQLIEQLSLGVYDTVRRLLGRLRP------RQLDDLTL 372 (495)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccCC------cccccCCH
Confidence 455678899999999999999999999886543334445567778899999999999999875542 23447899
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccCCCeEEEEeeccccCCCCCCCcCC
Q 001044 572 QKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFP 651 (1177)
Q Consensus 572 ~~li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~~~~~~~ 651 (1177)
.+.+++++..+.......++++..+.++. + ....|+..+.|++.|+++||+||++.|.|.+.....
T Consensus 373 ~~~l~~l~~~l~~~~~~~~v~l~~~~~~~-~-l~~~~~~~L~ril~nlL~NAiKha~~~~I~I~l~~~------------ 438 (495)
T PRK11644 373 EQAIRSLMREMELEDRGIVSHLDWRIDES-A-LSETQRVTLFRVCQEGLNNIVKHADASAVTLQGWQQ------------ 438 (495)
T ss_pred HHHHHHHHHHHHHhhcCceEEEEecCCcc-c-CChhHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEEc------------
Confidence 99999999887655544444544443322 2 356778889999999999999999988877754211
Q ss_pred cccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHHHHHHHH
Q 001044 652 TDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 731 (1177)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~IV 731 (1177)
+..+.++|+|+|+|||+++ .|+|+||++||+++
T Consensus 439 ----------------------------~~~i~l~V~DnG~Gi~~~~-------------------~~~GLGL~ivr~iv 471 (495)
T PRK11644 439 ----------------------------DERLMLVIEDDGSGLPPGS-------------------GQQGFGLRGMRERV 471 (495)
T ss_pred ----------------------------CCEEEEEEEECCCCCCcCC-------------------CCCCCcHHHHHHHH
Confidence 1247899999999998652 36799999999999
Q ss_pred HHcCCEEEEEEeCCCceEEEEEEec
Q 001044 732 NKMGGEIKVVKKNSPGTLMQLYLLL 756 (1177)
Q Consensus 732 e~~GG~I~v~S~~g~GT~f~~~Lpl 756 (1177)
+.|||+|+++| ++||+|++++|.
T Consensus 472 ~~~GG~i~v~S--~~Gt~f~I~LP~ 494 (495)
T PRK11644 472 TALGGTLTISC--THGTRLSVSLPQ 494 (495)
T ss_pred HHcCCEEEEEc--CCCEEEEEEEeC
Confidence 99999999999 889999999984
No 42
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=99.87 E-value=8e-21 Score=234.12 Aligned_cols=196 Identities=19% Similarity=0.271 Sum_probs=145.1
Q ss_pred HHHHHhHHhhhhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHHHHHH
Q 001044 497 QFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELE 576 (1177)
Q Consensus 497 ~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~l~~~~~dL~~li~ 576 (1177)
+.+..++||+++||++|.|++++-. ..+....+...+.++..+++++...-+. ..+..
T Consensus 340 e~l~~~~he~~n~L~~i~g~l~~~~--------~~~~~~~i~~~s~~~~~l~~~l~~~~~~--------------~~~~~ 397 (545)
T PRK15053 340 ESLRTLRHEHLNWMSTLNGLLQMKE--------YDRVLEMVQGESQAQQQLIDSLREAFAD--------------RQVAG 397 (545)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhhch--------hhHHHHHHHHHHHHHHHHHHHHHHhccc--------------HHHHH
Confidence 3566789999999999999887521 1235566778888888888887764221 11222
Q ss_pred HHHHHHHHHHhcCCcEEEEEcCCCCC-ceEEeCHHHHHHHHHHHHhhHhhcc---CCC--eEEEEeeccccCCCCCCCcC
Q 001044 577 ELVDMFSVQCSNHNVETVLDLSDNIP-RNVRGDPGRVFQIFSNLINNSIKFT---SSG--HIIIRGWCENLDTSKNTAEF 650 (1177)
Q Consensus 577 ~vv~~~~~~a~~k~I~l~~~i~~~~p-~~V~gD~~rL~QIL~NLL~NAIKfT---~~G--~v~v~~~~~~~~~~~~~~~~ 650 (1177)
.+......+.++++.+.+..+.... ....+|+..|.|||.||++||+||. ++| .|.+.+..
T Consensus 398 -~l~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~------------ 464 (545)
T PRK15053 398 -LLFGKVQRARELGLKMVIVPGSQLSQLPPGLDSTEFAAIVGNLLDNAFEASLRSDEGNKIVELFLSD------------ 464 (545)
T ss_pred -HHHHHHHHHHHhCCceEEcCCCccccccccCCHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEEEEE------------
Confidence 2222234567788888776543321 1246799999999999999999994 333 44443211
Q ss_pred CcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHHHHHHH
Q 001044 651 PTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTL 730 (1177)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~I 730 (1177)
....+.|+|.|+|+|||++.+++||++||+.+ .+..+|+||||+|||++
T Consensus 465 ----------------------------~~~~~~i~V~D~G~Gi~~~~~~~iF~~~~~tk---~~~~~g~GlGL~ivk~i 513 (545)
T PRK15053 465 ----------------------------EGDDVVIEVADQGCGVPESLRDKIFEQGVSTR---ADEPGEHGIGLYLIASY 513 (545)
T ss_pred ----------------------------CCCEEEEEEEeCCCCcCHHHHHHHhCCCCCCC---CCCCCCceeCHHHHHHH
Confidence 11247799999999999999999999999643 23456899999999999
Q ss_pred HHHcCCEEEEEEeCCCceEEEEEEecCC
Q 001044 731 VNKMGGEIKVVKKNSPGTLMQLYLLLGA 758 (1177)
Q Consensus 731 Ve~~GG~I~v~S~~g~GT~f~~~Lpl~~ 758 (1177)
|+.|||+|+++|.+|.||+|++.||...
T Consensus 514 v~~~~G~i~v~s~~~~Gt~f~i~lP~~~ 541 (545)
T PRK15053 514 VTRCGGVITLEDNDPCGTLFSIFIPKVK 541 (545)
T ss_pred HHHcCCEEEEEECCCCeEEEEEEECCCC
Confidence 9999999999999999999999999754
No 43
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.86 E-value=5e-21 Score=209.17 Aligned_cols=121 Identities=33% Similarity=0.511 Sum_probs=112.6
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1101 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~m 1101 (1177)
++||||||++..+..+...|+..||+|..+.+|++|++.+.. . ||+|++|++||.|
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~-----------------------~-~dlviLD~~lP~~ 56 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAARE-----------------------Q-PDLVLLDLMLPDL 56 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-----------------------C-CCEEEEECCCCCC
Confidence 379999999999999999999999999999999999999852 4 9999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCCC
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPS 1170 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~~~ 1170 (1177)
||+++|++||+. .. ..+|||+|||..+..++..++++||||||+|||+++||.++|+.++++...
T Consensus 57 dG~~~~~~iR~~-~~---~~~PIi~Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~~~ 121 (229)
T COG0745 57 DGLELCRRLRAK-KG---SGPPIIVLTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRNAG 121 (229)
T ss_pred CHHHHHHHHHhh-cC---CCCcEEEEECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcCcC
Confidence 999999999965 22 458999999999999999999999999999999999999999999988753
No 44
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=99.84 E-value=3.4e-19 Score=199.74 Aligned_cols=211 Identities=18% Similarity=0.294 Sum_probs=172.3
Q ss_pred HHHHHhHHhhhhHHHHHHHHHHHhhc--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHHHH
Q 001044 497 QFLANMSHELRTPMAAIIGLLEILKS--DDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKE 574 (1177)
Q Consensus 497 ~Fla~~SHELRTPL~~I~G~~elL~~--~~~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~l~~~~~dL~~l 574 (1177)
+=+.++||||..||+++..|+=.... +...+.....++..|..-.+|+-.+|+.+-.|+|-.+++-. ..+++|.++
T Consensus 453 qTmTslaHEinQPLnAmsaYLFsA~~A~e~~~s~qa~~~L~kie~L~eR~~~Iv~sLRqF~Rk~s~~~~--lqpV~L~~~ 530 (673)
T COG4192 453 QTMTSLAHEINQPLNAMSAYLFSARLALEEAPSAQAATSLDKIENLTERMGKIVNSLRQFARKNSSDES--LQPVRLNSV 530 (673)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC--cccccHHHH
Confidence 34678999999999999998743321 22345566788999999999999999999999998777644 458999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccCCC--eEEEEeeccccCCCCCCCcCCc
Q 001044 575 LEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG--HIIIRGWCENLDTSKNTAEFPT 652 (1177)
Q Consensus 575 i~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~G--~v~v~~~~~~~~~~~~~~~~~~ 652 (1177)
++.+.+.+..+.+.+.+.+.... +. .+|.||..+++|||.||+-||+..+..- .|.+.+.
T Consensus 531 v~~AweLl~~khk~rQ~~Li~pt--D~-~~V~gd~v~ieQVlvNl~~NaldA~~h~~p~i~~~~~--------------- 592 (673)
T COG4192 531 VEQAWELLQTKHKRRQIKLINPT--DD-LMVMGDAVSIEQVLVNLIVNALDASTHFAPWIKLIAL--------------- 592 (673)
T ss_pred HHHHHHHHHhhhhhccccccCCc--cc-ceecchhhhHHHHHHHHHHHHHhhhccCCceEEEEee---------------
Confidence 99999999999988888876543 22 3799999999999999999999987543 3333221
Q ss_pred ccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHHHHHHHHH
Q 001044 653 DRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVN 732 (1177)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~IVe 732 (1177)
.++...+++-|.|+|.|.|-+-.+++|.||. +.+.-|.||||+||..|++
T Consensus 593 ------------------------~~~~e~l~i~i~DnGqGwp~~l~dkLl~PFt------tsK~vgLGlGLSIsqSlme 642 (673)
T COG4192 593 ------------------------GTEQEMLRIAIIDNGQGWPHELVDKLLTPFT------TSKEVGLGLGLSISQSLME 642 (673)
T ss_pred ------------------------cCcccceEEEEecCCCCCchhHHHHhcCCcc------cccccccccchhHHHHHHH
Confidence 1223357899999999999999999999996 3355699999999999999
Q ss_pred HcCCEEEEEEeCCCceEEEEEEecC
Q 001044 733 KMGGEIKVVKKNSPGTLMQLYLLLG 757 (1177)
Q Consensus 733 ~~GG~I~v~S~~g~GT~f~~~Lpl~ 757 (1177)
.|.|++.+.|...+|.++.+.|...
T Consensus 643 qmqG~l~lAStLt~nA~ViL~f~v~ 667 (673)
T COG4192 643 QMQGRLALASTLTKNAMVILEFQVD 667 (673)
T ss_pred HhcCcchHhhhcccCcEEEEEEeec
Confidence 9999999999999999988887653
No 45
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=99.81 E-value=5.1e-17 Score=189.70 Aligned_cols=194 Identities=25% Similarity=0.402 Sum_probs=140.6
Q ss_pred HHHHHhHHhhhhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHHHHHH
Q 001044 497 QFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELE 576 (1177)
Q Consensus 497 ~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~l~~~~~dL~~li~ 576 (1177)
+-+...+||.++=|++|.|++++=. -++..+++. +.+..=...++.+.. ++. ...+.
T Consensus 335 ~aLRaq~HEfmNkLhtI~GLlql~~-----yd~a~~~I~---~~~~~qq~~~~~l~~--~i~-------------~~~lA 391 (537)
T COG3290 335 EALRAQSHEFMNKLHTILGLLQLGE-----YDDALDYIQ---QESEEQQELIDSLSE--KIK-------------DPVLA 391 (537)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhhcc-----HHHHHHHHH---HHHhhhhhhHHHHHH--hcc-------------cHHHH
Confidence 4577889999999999999999621 122333333 333333333333221 111 23444
Q ss_pred HHHHHHHHHHhcCCcEEEEEcCCCCCc-eEEeCHHHHHHHHHHHHhhHhhccC---C-CeEEEEeeccccCCCCCCCcCC
Q 001044 577 ELVDMFSVQCSNHNVETVLDLSDNIPR-NVRGDPGRVFQIFSNLINNSIKFTS---S-GHIIIRGWCENLDTSKNTAEFP 651 (1177)
Q Consensus 577 ~vv~~~~~~a~~k~I~l~~~i~~~~p~-~V~gD~~rL~QIL~NLL~NAIKfT~---~-G~v~v~~~~~~~~~~~~~~~~~ 651 (1177)
.++-.-..+|+++|+++.++....+|. .-.-+..-+--|+.|||+||+..+- + ..|.+..
T Consensus 392 g~LlgK~~rArElgv~l~Id~~S~l~~~p~~~~~~~litIlGNLidNA~eA~~~~~~~k~I~l~i--------------- 456 (537)
T COG3290 392 GFLLGKISRARELGVSLIIDPNSQLPQLPSELQPHDLVTILGNLIDNALEALLAPEENKEIELSL--------------- 456 (537)
T ss_pred HHHHhHHHHHHHcCceEEEcCCCcCCCCCCccChHHHHHHHHHHHHHHHHHhhccCCCcEEEEEE---------------
Confidence 555455678999999999987665543 2356889999999999999999875 2 2344332
Q ss_pred cccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHHHHHHHH
Q 001044 652 TDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 731 (1177)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~IV 731 (1177)
.+....+.|+|.|||||||++.++++|++=|.. +..+|.|.||++||++|
T Consensus 457 -------------------------~~~~~~lvieV~D~G~GI~~~~~~~iFe~G~St-----k~~~~rGiGL~Lvkq~V 506 (537)
T COG3290 457 -------------------------SDRGDELVIEVADTGPGIPPEVRDKIFEKGVST-----KNTGGRGIGLYLVKQLV 506 (537)
T ss_pred -------------------------EecCCEEEEEEeCCCCCCChHHHHHHHhcCccc-----cCCCCCchhHHHHHHHH
Confidence 122345889999999999999999999976632 22478999999999999
Q ss_pred HHcCCEEEEEEeCCCceEEEEEEecCC
Q 001044 732 NKMGGEIKVVKKNSPGTLMQLYLLLGA 758 (1177)
Q Consensus 732 e~~GG~I~v~S~~g~GT~f~~~Lpl~~ 758 (1177)
+.+||.|+++|..+.||+|++++|...
T Consensus 507 ~~~~G~I~~~s~~~~Gt~F~i~iP~~~ 533 (537)
T COG3290 507 ERLGGSIEVESEKGQGTRFSIYIPKVK 533 (537)
T ss_pred HHcCceEEEeeCCCCceEEEEECCCCc
Confidence 999999999999999999999999754
No 46
>PRK13559 hypothetical protein; Provisional
Probab=99.79 E-value=4.2e-18 Score=198.94 Aligned_cols=185 Identities=14% Similarity=0.211 Sum_probs=138.5
Q ss_pred HHHHHHHhHHhhhhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHHHH
Q 001044 495 KSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKE 574 (1177)
Q Consensus 495 Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~l~~~~~dL~~l 574 (1177)
+.+|++.++||+||||+.|.|+++++... .+...++..|.+.+.+|.++++++|+.++ ..++++.++
T Consensus 170 ~~~l~~~l~H~~~n~L~~i~~~~~l~~~~----~~~~~~~~~i~~~~~~l~~~~~~ll~~~~---------~~~v~l~~~ 236 (361)
T PRK13559 170 ERRLAREVDHRSKNVFAVVDSIVRLTGRA----DDPSLYAAAIQERVQALARAHETLLDERG---------WETVEVEEL 236 (361)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhccC----CCHHHHHHHHHHHHHHHHHHHHHHhccCC---------cCcccHHHH
Confidence 45789999999999999999999987522 12334567788899999999999987654 357899999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeC-HHHHHHHHHHHHhhHhhc---cC-CCeEEEEeeccccCCCCCCCc
Q 001044 575 LEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGD-PGRVFQIFSNLINNSIKF---TS-SGHIIIRGWCENLDTSKNTAE 649 (1177)
Q Consensus 575 i~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD-~~rL~QIL~NLL~NAIKf---T~-~G~v~v~~~~~~~~~~~~~~~ 649 (1177)
+++++..+... +..+.++.+ .+ .+..+ ...|.|||.||+.||+|| ++ .|.|.|.+...
T Consensus 237 ~~~~~~~~~~~----~~~i~~~~~-~~--~~~~~~~~~l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~---------- 299 (361)
T PRK13559 237 IRAQVAPYAPR----ATRVAFEGP-GI--RLGAASVQPLGLVLHELAVNAIKHGALSADQGRISISWKPS---------- 299 (361)
T ss_pred HHHHHHhhcCC----CceEEEECC-Ce--eeCHHHHHHHHHHHHHHHHhHHHhccccCCCcEEEEEEEec----------
Confidence 99998876432 444544432 11 22222 246999999999999999 43 46777654110
Q ss_pred CCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHHHHHH
Q 001044 650 FPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRT 729 (1177)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~ 729 (1177)
.....+.+.|.|+|.|++++ ..|+|+||.||++
T Consensus 300 ----------------------------~~~~~~~i~v~d~G~~~~~~-------------------~~~~g~Gl~i~~~ 332 (361)
T PRK13559 300 ----------------------------PEGAGFRIDWQEQGGPTPPK-------------------LAKRGFGTVIIGA 332 (361)
T ss_pred ----------------------------CCCCeEEEEEECCCCCCCCC-------------------CCCCCcHHHHHHH
Confidence 11224778999999997653 2378999999999
Q ss_pred HHHH-cCCEEEEEEeCCCceEEEEEEecC
Q 001044 730 LVNK-MGGEIKVVKKNSPGTLMQLYLLLG 757 (1177)
Q Consensus 730 IVe~-~GG~I~v~S~~g~GT~f~~~Lpl~ 757 (1177)
+|+. |||+|++++. +.||+|+|+||+.
T Consensus 333 ~v~~~~gG~i~~~~~-~~G~~~~l~~P~~ 360 (361)
T PRK13559 333 MVESQLNGQLEKTWS-DDGLLARIEIPSR 360 (361)
T ss_pred HHHHHcCCeEEEEEc-CCeEEEEEEEeCC
Confidence 9987 9999999987 6799999999964
No 47
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=99.78 E-value=1.3e-18 Score=168.65 Aligned_cols=109 Identities=36% Similarity=0.582 Sum_probs=96.3
Q ss_pred eCHHHHHHHHHHHHhhHhhccCC-CeEEEEeeccccCCCCCCCcCCcccccccchhhhhhhhhhcccccccCCCceEEEE
Q 001044 607 GDPGRVFQIFSNLINNSIKFTSS-GHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCF 685 (1177)
Q Consensus 607 gD~~rL~QIL~NLL~NAIKfT~~-G~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 685 (1177)
||+.+|++||.||++||++|+++ +.|.|.+... ...+.|
T Consensus 1 gd~~~l~~il~~ll~Na~~~~~~~~~I~i~~~~~----------------------------------------~~~~~i 40 (111)
T PF02518_consen 1 GDPDRLRQILSELLDNAIKHSPEGGKIDITIEED----------------------------------------DDHLSI 40 (111)
T ss_dssp ETHHHHHHHHHHHHHHHHHHHHHTSEEEEEEEEE----------------------------------------TTEEEE
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEEe----------------------------------------cCeEEE
Confidence 79999999999999999999976 7777765321 124789
Q ss_pred EEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEec
Q 001044 686 EVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 756 (1177)
Q Consensus 686 ~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~IVe~~GG~I~v~S~~g~GT~f~~~Lpl 756 (1177)
+|.|+|.|||++.++++|++|++.+. .....+|+||||++|+.++++|+|+|++.+.++.||+|+|.+|+
T Consensus 41 ~i~d~G~gi~~~~l~~~~~~~~~~~~-~~~~~~g~GlGL~~~~~~~~~~~g~l~~~~~~~~gt~v~~~~p~ 110 (111)
T PF02518_consen 41 EISDNGVGIPPEELEKLFEPFFTSDK-SETSISGHGLGLYIVKQIAERHGGELTIESSEGGGTTVTFTLPL 110 (111)
T ss_dssp EEEESSSSTTHHHHHHHCSTTSHSSS-SSGGSSSSSHHHHHHHHHHHHTTEEEEEEEETTTEEEEEEEEEG
T ss_pred EEEeccccccccccccchhhcccccc-cccccCCCChHHHHHHHHHHHCCCEEEEEEcCCCcEEEEEEEEC
Confidence 99999999999999999999999876 33445789999999999999999999999999999999999997
No 48
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=99.75 E-value=1.1e-16 Score=198.29 Aligned_cols=194 Identities=22% Similarity=0.290 Sum_probs=140.8
Q ss_pred HHHHhHHhhhhHHHHHHHHHHH----hhcC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHH
Q 001044 498 FLANMSHELRTPMAAIIGLLEI----LKSD-DQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQ 572 (1177)
Q Consensus 498 Fla~~SHELRTPL~~I~G~~el----L~~~-~~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~l~~~~~dL~ 572 (1177)
..+.++||+++|++.+..++.. +... ....++..+.+..+.....++...+.+++...+ +...++++.
T Consensus 363 ~~~~la~el~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~-------~~~~~~~l~ 435 (565)
T PRK10935 363 ERATIARELHDSLAQVLSYLKIQLTLLKRSLDEDNAKAQSIIAEFDQALSDAYRQLRELLTTFR-------LTIQEANLG 435 (565)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------CCCCCCCHH
Confidence 3456899999999888776643 3322 122344556677777777888888888876544 334578999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccCCCeEEEEeeccccCCCCCCCcCCc
Q 001044 573 KELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPT 652 (1177)
Q Consensus 573 ~li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~~~~~~~~ 652 (1177)
+.+++++..+.... ++.+.++.+........+++.++.|++.||+.||+||++.|.+.+.....
T Consensus 436 ~~l~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~l~qv~~nll~NA~k~~~~~~i~i~~~~~------------- 499 (565)
T PRK10935 436 SALEEMLDQLRNQT---DAKITLDCRLPSQALDAQQQVHLLQIIREATLNAIKHANASEIAVSCVTN------------- 499 (565)
T ss_pred HHHHHHHHHHHHhh---CCeEEEEeeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEc-------------
Confidence 99999998877542 33343332211111223455679999999999999999988887764321
Q ss_pred ccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHHHHHHHHH
Q 001044 653 DRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVN 732 (1177)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~IVe 732 (1177)
....+.|+|.|+|+|||++. ..|+||||+||+++++
T Consensus 500 --------------------------~~~~~~i~V~D~G~Gi~~~~------------------~~~~glGL~i~~~iv~ 535 (565)
T PRK10935 500 --------------------------PDGEHTVSIRDDGIGIGELK------------------EPEGHYGLNIMQERAE 535 (565)
T ss_pred --------------------------CCCEEEEEEEECCcCcCCCC------------------CCCCCcCHHHHHHHHH
Confidence 11247799999999998632 2378999999999999
Q ss_pred HcCCEEEEEEeCCCceEEEEEEecCC
Q 001044 733 KMGGEIKVVKKNSPGTLMQLYLLLGA 758 (1177)
Q Consensus 733 ~~GG~I~v~S~~g~GT~f~~~Lpl~~ 758 (1177)
.|||+|+++|.+++||+|++.||...
T Consensus 536 ~~~G~i~v~s~~~~Gt~~~i~lP~~~ 561 (565)
T PRK10935 536 RLGGTLTISQPPGGGTTVSLTFPSQQ 561 (565)
T ss_pred HcCCEEEEEECCCCcEEEEEEECCCC
Confidence 99999999999999999999999753
No 49
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=99.73 E-value=2e-17 Score=184.34 Aligned_cols=121 Identities=31% Similarity=0.512 Sum_probs=111.0
Q ss_pred CCcEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001044 1020 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1099 (1177)
Q Consensus 1020 ~g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP 1099 (1177)
..++||+|||.+.++..+..+|+..||.|..|+||++|++.... +++|+||+|++||
T Consensus 13 ~~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~-----------------------~~~dlvllD~~mp 69 (360)
T COG3437 13 EKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQE-----------------------EPPDLVLLDVRMP 69 (360)
T ss_pred ccceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhcc-----------------------cCCceEEeeccCC
Confidence 45799999999999999999999999999999999999998752 4699999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHh
Q 001044 1100 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLT 1165 (1177)
Q Consensus 1100 ~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~ 1165 (1177)
+|||+|+|.+|+...+. +.++||+++||.++.++..+|+++|+++||.||+++.+|..++...+
T Consensus 70 ~mdg~ev~~~lk~~~p~--t~~ip~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~~ 133 (360)
T COG3437 70 EMDGAEVLNKLKAMSPS--TRRIPVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHL 133 (360)
T ss_pred CccHHHHHHHHHhcCCc--ccccceEEEeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHH
Confidence 99999999999985443 46899999999999999999999999999999999999999996554
No 50
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.72 E-value=2.2e-16 Score=183.85 Aligned_cols=124 Identities=29% Similarity=0.456 Sum_probs=115.6
Q ss_pred CCcEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001044 1020 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1099 (1177)
Q Consensus 1020 ~g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP 1099 (1177)
...+||+|||+..++..++.+|...|+.|..+.+|++|+..+.+ .+||+||.|+.||
T Consensus 131 ~~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e-----------------------~~~dlil~d~~mp 187 (435)
T COG3706 131 APKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAE-----------------------LPPDLVLLDANMP 187 (435)
T ss_pred cCceEEEEcCcHHHHHHHHHHHHhccceeeeecCHHHHHHHHhc-----------------------CCCcEEEEecCCC
Confidence 34699999999999999999999999999999999999999863 4899999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCC
Q 001044 1100 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1169 (1177)
Q Consensus 1100 ~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~~ 1169 (1177)
+|||||+|+++|+.... ..+|||++|+..+.....+++++|++||++||++..+|..++++.+++..
T Consensus 188 ~~dg~el~~~lr~~~~t---~~ipii~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~~ 254 (435)
T COG3706 188 DMDGLELCTRLRQLERT---RDIPIILLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRKR 254 (435)
T ss_pred ccCHHHHHHHHhccccc---ccccEEEEecccchHHHHHHHHcCCcceEecCCCHHHHHHHHHHHHHhhh
Confidence 99999999999998764 57999999999999999999999999999999999999999999887664
No 51
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.70 E-value=6.6e-17 Score=189.01 Aligned_cols=119 Identities=23% Similarity=0.478 Sum_probs=108.2
Q ss_pred cEEEEEecChHHHHHHHHHHh--hcCCEEE-EEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILE--KVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1098 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~--~~G~~v~-~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~M 1098 (1177)
.+||||||.+..|+.|+.++. +.|++|+ +|.||+||++.+.. .+|||||+|+.|
T Consensus 2 ykVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e-----------------------~~pDiviTDI~M 58 (475)
T COG4753 2 YKVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQE-----------------------TQPDIVITDINM 58 (475)
T ss_pred eeEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHHh-----------------------cCCCEEEEecCC
Confidence 479999999999999999985 5788765 89999999999974 489999999999
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1099 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1099 P~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
|+|||+++.+.+|+.. +.+.+|+|||+.+-+...+|++.|++|||.||++.++|.+++.++....
T Consensus 59 P~mdGLdLI~~ike~~-----p~~~~IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~kl 123 (475)
T COG4753 59 PGMDGLDLIKAIKEQS-----PDTEFIILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIGKL 123 (475)
T ss_pred CCCcHHHHHHHHHHhC-----CCceEEEEeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHHHHH
Confidence 9999999999999854 4578999999999999999999999999999999999999998887543
No 52
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=99.70 E-value=2e-15 Score=187.57 Aligned_cols=184 Identities=20% Similarity=0.299 Sum_probs=135.4
Q ss_pred hhhHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHHHHHHHHHHHHHH
Q 001044 506 LRTPMAAIIGLLEILKSD-DQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSV 584 (1177)
Q Consensus 506 LRTPL~~I~G~~elL~~~-~~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~l~~~~~dL~~li~~vv~~~~~ 584 (1177)
+..+|+.+...+..+... ...+++..+.+..|.....++...+.++|...+.+ ..+.++.+.+++++..+..
T Consensus 373 i~~~L~~l~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~lr~ll~~~r~~-------~~~~~l~~~l~~~~~~~~~ 445 (569)
T PRK10600 373 IAQSLSCMKMQVSCLQMQGDALPESSRELLSQIRNELNASWRQLRELLTTFRLQ-------LTEPGLRPALEASCEEFSA 445 (569)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcC-------cccCCHHHHHHHHHHHHHH
Confidence 333456666555544322 33456667788889999999999999999877643 3467888999999888765
Q ss_pred HHhcCCcEEEEEcCCCCCceEE-eCHHHHHHHHHHHHhhHhhccCCCeEEEEeeccccCCCCCCCcCCcccccccchhhh
Q 001044 585 QCSNHNVETVLDLSDNIPRNVR-GDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 663 (1177)
Q Consensus 585 ~a~~k~I~l~~~i~~~~p~~V~-gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (1177)
.. ++.+.++...... .+. .++..+.||+.|+|+||+||++.+.|.|.+...
T Consensus 446 ~~---~~~i~~~~~~~~~-~~~~~~~~~l~~il~ell~NA~kha~a~~i~V~~~~~------------------------ 497 (569)
T PRK10600 446 RF---GFPVKLDYQLPPR-LVPSHQAIHLLQIAREALSNALKHAQASEVVVTVAQN------------------------ 497 (569)
T ss_pred Hh---CCeEEEEecCCcc-cCCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEc------------------------
Confidence 54 3344443322111 122 244569999999999999999888777664211
Q ss_pred hhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHHHHHHHHHHcCCEEEEEEe
Q 001044 664 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKK 743 (1177)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~IVe~~GG~I~v~S~ 743 (1177)
...+.|+|.|+|+|||++. ..|+|+||+||+++++.|||+|.+.|.
T Consensus 498 ----------------~~~~~l~V~D~G~Gi~~~~------------------~~~~glGL~i~~~~~~~lgG~l~i~s~ 543 (569)
T PRK10600 498 ----------------QNQVKLSVQDNGCGVPENA------------------ERSNHYGLIIMRDRAQSLRGDCRVRRR 543 (569)
T ss_pred ----------------CCEEEEEEEECCCCCCccc------------------cCCCCccHHHHHHHHHHcCCEEEEEEC
Confidence 1247799999999999853 126799999999999999999999999
Q ss_pred CCCceEEEEEEecCC
Q 001044 744 NSPGTLMQLYLLLGA 758 (1177)
Q Consensus 744 ~g~GT~f~~~Lpl~~ 758 (1177)
+|+||+|+++||...
T Consensus 544 ~~~Gt~v~i~lp~~~ 558 (569)
T PRK10600 544 ESGGTEVVVTFIPEK 558 (569)
T ss_pred CCCCEEEEEEEecCC
Confidence 999999999999753
No 53
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=99.70 E-value=3.1e-16 Score=151.14 Aligned_cols=111 Identities=32% Similarity=0.553 Sum_probs=104.6
Q ss_pred EEEEecChHHHHHHHHHHhhcCC-EEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCC
Q 001044 1024 ILLAEDTPLIQIVACKILEKVGA-TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMD 1102 (1177)
Q Consensus 1024 ILIVdD~~~~~~~l~~~L~~~G~-~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~md 1102 (1177)
||||||++..+..++..|+..|+ .|..+.++.+|++.+.. ..||+|++|+.||.++
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~-----------------------~~~d~iiid~~~~~~~ 57 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKK-----------------------HPPDLIIIDLELPDGD 57 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHH-----------------------STESEEEEESSSSSSB
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcc-----------------------cCceEEEEEeeecccc
Confidence 79999999999999999999999 99999999999999975 4699999999999999
Q ss_pred HHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHH
Q 001044 1103 GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTIL 1162 (1177)
Q Consensus 1103 G~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~ 1162 (1177)
|.+++++||+.. +++|||++|++.+.....+++++|+++||.||++.++|.++|+
T Consensus 58 ~~~~~~~i~~~~-----~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 58 GLELLEQIRQIN-----PSIPIIVVTDEDDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp HHHHHHHHHHHT-----TTSEEEEEESSTSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred cccccccccccc-----ccccEEEecCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 999999999864 4699999999999999999999999999999999999999874
No 54
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.69 E-value=2.6e-16 Score=184.59 Aligned_cols=118 Identities=32% Similarity=0.536 Sum_probs=111.1
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1101 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~m 1101 (1177)
.+||||||++..|..+..+|+..||.|..+.|+.+|++.+.. ..||+|++|+.||+|
T Consensus 5 ~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~-----------------------~~~~lvl~Di~mp~~ 61 (464)
T COG2204 5 ARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSE-----------------------SPFDLVLLDIRMPGM 61 (464)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhc-----------------------CCCCEEEEecCCCCC
Confidence 479999999999999999999999999999999999999964 269999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1167 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~ 1167 (1177)
||++++++|++.. +++|||++|||.+.+...+|++.||-|||.|||+++.|...|.+.++.
T Consensus 62 ~Gl~ll~~i~~~~-----~~~pVI~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~ 122 (464)
T COG2204 62 DGLELLKEIKSRD-----PDLPVIVMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALEL 122 (464)
T ss_pred chHHHHHHHHhhC-----CCCCEEEEeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHH
Confidence 9999999999863 469999999999999999999999999999999999999999998864
No 55
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.68 E-value=9.3e-16 Score=151.68 Aligned_cols=121 Identities=40% Similarity=0.642 Sum_probs=106.0
Q ss_pred CCcEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHH-HHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001044 1020 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGL-QAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1098 (1177)
Q Consensus 1020 ~g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~-eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~M 1098 (1177)
.+.+||+|||++.++..+..+|+..|+.+..+.+|. +|++.++.. ..||+|++|++|
T Consensus 4 ~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~~~----------------------~~~dlii~D~~m 61 (130)
T COG0784 4 SGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLREL----------------------PQPDLILLDINM 61 (130)
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHHhC----------------------CCCCEEEEeCCC
Confidence 357999999999999999999999999999999996 999999641 149999999999
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHH-HHHHHHHHhhc
Q 001044 1099 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSER-MVSTILRLTKN 1167 (1177)
Q Consensus 1099 P~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~-L~~~I~~l~~~ 1167 (1177)
|+|||+++++++|+. ...+|||++|++.......+++++|+++|+.||+...+ |..++...+..
T Consensus 62 p~~~G~~~~~~l~~~-----~~~~pvv~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~ 126 (130)
T COG0784 62 PGMDGIELLRRLRAR-----GPNIPVILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLLAR 126 (130)
T ss_pred CCCCHHHHHHHHHhC-----CCCCCEEEEEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHHHHHHh
Confidence 999999999999986 24588999999999988888899999999999977666 77777766543
No 56
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.64 E-value=3.6e-15 Score=161.57 Aligned_cols=118 Identities=30% Similarity=0.444 Sum_probs=106.9
Q ss_pred EEEEEecChHHHHHHHHHHhhcC-CEE-EEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001044 1023 RILLAEDTPLIQIVACKILEKVG-ATV-SVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1100 (1177)
Q Consensus 1023 ~ILIVdD~~~~~~~l~~~L~~~G-~~v-~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~ 1100 (1177)
+||||||+|..|..++.+|+..+ ++| ..+.||.++++.+.. .+||+|+||+.||+
T Consensus 2 ~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~-----------------------~~pdvvl~Dl~mP~ 58 (211)
T COG2197 2 KVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLARE-----------------------LKPDVVLLDLSMPG 58 (211)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHhhh-----------------------cCCCEEEEcCCCCC
Confidence 69999999999999999998766 775 467889999998643 58999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1101 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1101 mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
|||+|+++.||+.. ++++||++|++.+.....+++++||++|+.|+.+.++|.++|+.+..+.
T Consensus 59 ~~G~e~~~~l~~~~-----p~~~vvvlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~~G~ 121 (211)
T COG2197 59 MDGLEALKQLRARG-----PDIKVVVLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAGG 121 (211)
T ss_pred CChHHHHHHHHHHC-----CCCcEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 99999999999542 5689999999999999999999999999999999999999999988665
No 57
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.62 E-value=3.9e-15 Score=152.26 Aligned_cols=120 Identities=19% Similarity=0.295 Sum_probs=109.4
Q ss_pred CcEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1100 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~ 1100 (1177)
..-|-||||+...|+.+..+|+..||+|....++++.+.... ...|-++|+|+.||+
T Consensus 4 ~~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~-----------------------~~~pGclllDvrMPg 60 (202)
T COG4566 4 EPLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAP-----------------------LDRPGCLLLDVRMPG 60 (202)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhcc-----------------------CCCCCeEEEecCCCC
Confidence 357999999999999999999999999999999999888742 347899999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1101 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1101 mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
|+|.|+-+++++.. ..+|||++|+|.+.....+++++||-|||.|||+.+.|+++|.+.+...
T Consensus 61 ~sGlelq~~L~~~~-----~~~PVIfiTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~~ 123 (202)
T COG4566 61 MSGLELQDRLAERG-----IRLPVIFLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALARD 123 (202)
T ss_pred CchHHHHHHHHhcC-----CCCCEEEEeCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHHHH
Confidence 99999999999753 3599999999999999999999999999999999999999999887653
No 58
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.60 E-value=7.8e-14 Score=167.34 Aligned_cols=120 Identities=26% Similarity=0.405 Sum_probs=106.4
Q ss_pred CCcEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001044 1020 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1099 (1177)
Q Consensus 1020 ~g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP 1099 (1177)
...+||+|||++..+..+..+|.. ++.+..+.+|.+|++.+. ..+||+|++|+.||
T Consensus 154 ~~~~vlivdd~~~~~~~l~~~l~~-~~~~~~~~~~~~a~~~~~-----------------------~~~~d~vi~d~~~p 209 (457)
T PRK09581 154 EDGRILLVDDDVSQAERIANILKE-EFRVVVVSDPSEALFNAA-----------------------ETNYDLVIVSANFE 209 (457)
T ss_pred cCceEEEEecccchHHHHHHHHhh-cceeeeecChHHHHHhcc-----------------------cCCCCEEEecCCCC
Confidence 346899999999999999999975 577788999999999874 35799999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001044 1100 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1166 (1177)
Q Consensus 1100 ~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~ 1166 (1177)
.|||++++++||+... .+++|||++|++.+.+...+|+++|++|||.||++.++|...|....+
T Consensus 210 ~~~g~~l~~~i~~~~~---~~~~~ii~ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~~~~ 273 (457)
T PRK09581 210 NYDPLRLCSQLRSKER---TRYVPILLLVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRTQIR 273 (457)
T ss_pred CchHhHHHHHHHhccc---cCCCcEEEEeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHHHHH
Confidence 9999999999997532 257999999999999999999999999999999999999998876543
No 59
>PLN03029 type-a response regulator protein; Provisional
Probab=99.59 E-value=1.8e-14 Score=157.60 Aligned_cols=138 Identities=22% Similarity=0.384 Sum_probs=107.8
Q ss_pred CcEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1100 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~ 1100 (1177)
.++||||||++.++..+..+|+..||.|..+.+|.+|++.+....... .... .............||+||+|+.||+
T Consensus 8 ~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~-~~p~--~~~~~~~~~~~~~~dlVllD~~mp~ 84 (222)
T PLN03029 8 QFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDR-SNPD--TPSVSPNSHQEVEVNLIITDYCMPG 84 (222)
T ss_pred CccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccc-cccc--cccccccccccccCCEEEEcCCCCC
Confidence 479999999999999999999999999999999999999885310000 0000 0000001112346899999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Q 001044 1101 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL 1164 (1177)
Q Consensus 1101 mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1164 (1177)
|+|+++++.||+... ...+|||++|+....+...+|+++|+++||.||++..+|...+..+
T Consensus 85 ~~G~e~l~~ir~~~~---~~~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~ 145 (222)
T PLN03029 85 MTGYDLLKKIKESSS---LRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHM 145 (222)
T ss_pred CCHHHHHHHHHhccc---cCCCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHHH
Confidence 999999999997532 2468999999999999999999999999999999999987655443
No 60
>PRK10547 chemotaxis protein CheA; Provisional
Probab=99.58 E-value=1.5e-13 Score=169.99 Aligned_cols=146 Identities=19% Similarity=0.368 Sum_probs=108.7
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHH---HHHHHhhHhhccC-------------CCeE
Q 001044 569 FDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQI---FSNLINNSIKFTS-------------SGHI 632 (1177)
Q Consensus 569 ~dL~~li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QI---L~NLL~NAIKfT~-------------~G~v 632 (1177)
+.+..++......++..+...+.++.+.+... .+..|+..+.++ |.||+.||++|.- .|.|
T Consensus 343 ~p~~~~~~~~~rlvrdla~~~gk~v~l~~~g~---~~~lD~~~l~~l~dpL~hLirNAidHgie~p~~R~~~gkp~~G~I 419 (670)
T PRK10547 343 MPMEYVFSRFPRLVRDLAGKLGKQVELTLVGS---STELDKSLIERIIDPLTHLVRNSLDHGIELPEKRLAAGKNSVGNL 419 (670)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCcEEEEEeCC---ceecCHHHHHHHHHHHHHHHHHHHHhhccchhhHHhcCCCCCCce
Confidence 34556666666666666665555555555433 257899999998 6799999999962 2455
Q ss_pred EEEeeccccCCCCCCCcCCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHh------------
Q 001044 633 IIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWE------------ 700 (1177)
Q Consensus 633 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~------------ 700 (1177)
.+++.. ....+.|+|.|+|.||+++.+.
T Consensus 420 ~l~a~~----------------------------------------~~~~v~I~V~DdG~GId~e~i~~~a~~~Gl~~~~ 459 (670)
T PRK10547 420 ILSAEH----------------------------------------QGGNICIEVTDDGAGLNRERILAKAASQGLAVSE 459 (670)
T ss_pred EEEEEE----------------------------------------cCCEEEEEEEeCCCCCCHHHHHHHHHHcCCCccc
Confidence 554321 1124779999999999997653
Q ss_pred ---------hhhcccccCCCCCCCCCCccchhHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCC
Q 001044 701 ---------TVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA 758 (1177)
Q Consensus 701 ---------~IFe~F~q~d~s~~~~~~GtGLGLaIvk~IVe~~GG~I~v~S~~g~GT~f~~~Lpl~~ 758 (1177)
.||+|||..... .+..+|.|+||+|||++++.|||+|.++|.+|+||+|++.||+..
T Consensus 460 ~ls~~e~~~lIF~pgfst~~~-~~~~sGrGvGL~iVk~~ve~lgG~I~v~S~~g~Gt~f~i~LPltl 525 (670)
T PRK10547 460 NMSDEEVGMLIFAPGFSTAEQ-VTDVSGRGVGMDVVKRNIQEMGGHVEIQSKQGKGTTIRILLPLTL 525 (670)
T ss_pred cCCHHHHHHHhhcCCcccccc-cccCCCCchhHHHHHHHHHHcCCEEEEEecCCCcEEEEEEEechh
Confidence 699997754322 233579999999999999999999999999999999999999864
No 61
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.58 E-value=2e-14 Score=149.92 Aligned_cols=117 Identities=26% Similarity=0.413 Sum_probs=105.1
Q ss_pred cEEEEEecChHHHHHHHHHHhhc-CCEEE-EEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKV-GATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1099 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~-G~~v~-~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP 1099 (1177)
++||||||++...++-+.++++. ||.++ +|.+++||...+.. ..|||||+|+-||
T Consensus 1 i~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~-----------------------~~pDLILLDiYmP 57 (224)
T COG4565 1 INVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEE-----------------------FKPDLILLDIYMP 57 (224)
T ss_pred CcEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHHh-----------------------hCCCEEEEeeccC
Confidence 37999999999999999999974 78755 79999999999974 3579999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001044 1100 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1166 (1177)
Q Consensus 1100 ~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~ 1166 (1177)
+.+|++++..||+.. ..+-||++||-++.+...+++..|+-|||.|||..+.|.+++.++.+
T Consensus 58 d~~Gi~lL~~ir~~~-----~~~DVI~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~ 119 (224)
T COG4565 58 DGNGIELLPELRSQH-----YPVDVIVITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQ 119 (224)
T ss_pred CCccHHHHHHHHhcC-----CCCCEEEEeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHHH
Confidence 999999999999752 34679999999999999999999999999999999999999988764
No 62
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.56 E-value=5.2e-14 Score=154.08 Aligned_cols=117 Identities=24% Similarity=0.300 Sum_probs=104.9
Q ss_pred CcEEEEEecChHHHHHHHHHHhh-cCCE-EEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEK-VGAT-VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1098 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~-~G~~-v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~M 1098 (1177)
..+||||||++..+..+..+|+. .|+. |..+.++.+|++.+.. ..||+|++|+.|
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~-----------------------~~pdlvllD~~m 60 (225)
T PRK10046 4 PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIER-----------------------FKPGLILLDNYL 60 (225)
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHh-----------------------cCCCEEEEeCCC
Confidence 36899999999999999999986 4785 6789999999998863 469999999999
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHh
Q 001044 1099 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLT 1165 (1177)
Q Consensus 1099 P~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~ 1165 (1177)
|+|+|+++++.||+.. ..+|||++|++...+...+++++|+++|+.||++.++|..+|+++.
T Consensus 61 p~~~gle~~~~l~~~~-----~~~~iivls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~~ 122 (225)
T PRK10046 61 PDGRGINLLHELVQAH-----YPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 (225)
T ss_pred CCCcHHHHHHHHHhcC-----CCCCEEEEEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHHH
Confidence 9999999999999742 3478999999999999999999999999999999999999998763
No 63
>PRK11173 two-component response regulator; Provisional
Probab=99.55 E-value=9.7e-14 Score=152.25 Aligned_cols=118 Identities=25% Similarity=0.392 Sum_probs=109.0
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1101 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~m 1101 (1177)
.+||+|||++..+..+...|+..|+.|..+.++.+|++.+.. ..||+|++|+.||.|
T Consensus 4 ~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-----------------------~~~dlvild~~l~~~ 60 (237)
T PRK11173 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE-----------------------NDINLVIMDINLPGK 60 (237)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhh-----------------------CCCCEEEEcCCCCCC
Confidence 589999999999999999999999999999999999998853 479999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
+|+++++.||+. ..+|||++|++....+..+++++|+++|+.||++.++|..++..++++.
T Consensus 61 ~g~~~~~~lr~~------~~~pii~lt~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~r~ 121 (237)
T PRK11173 61 NGLLLARELREQ------ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (237)
T ss_pred CHHHHHHHHhcC------CCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 999999999963 2489999999999999999999999999999999999999999988764
No 64
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.55 E-value=1.2e-13 Score=149.59 Aligned_cols=118 Identities=24% Similarity=0.354 Sum_probs=108.2
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1101 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~m 1101 (1177)
.+||+|||++..+..+...|+..|+.+..+.++.+++..+.. ..||+|++|+.||++
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-----------------------~~~dlvild~~l~~~ 58 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAAT-----------------------RKPDLIILDLGLPDG 58 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc-----------------------CCCCEEEEeCCCCCC
Confidence 379999999999999999999999999999999999987742 469999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
+|+++++.||+. ..+|||++|++...+...+++++|+++||.||++.++|..+++.++++.
T Consensus 59 ~g~~~~~~lr~~------~~~pvi~lt~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~~~ 119 (225)
T PRK10529 59 DGIEFIRDLRQW------SAIPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (225)
T ss_pred CHHHHHHHHHcC------CCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 999999999963 3589999999999999999999999999999999999999999988764
No 65
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.54 E-value=1.1e-13 Score=149.92 Aligned_cols=119 Identities=27% Similarity=0.413 Sum_probs=109.7
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1101 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~m 1101 (1177)
++||+|||++..+..+...|+..|+.|..+.++.+|++.+.. ..||+|++|+.||.+
T Consensus 1 m~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~-----------------------~~~dlvild~~l~~~ 57 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNE-----------------------HLPDIAIVDLGLPDE 57 (223)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhh-----------------------CCCCEEEEECCCCCC
Confidence 379999999999999999999999999999999999998753 469999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
+|+++++.||+.. .++|||++|+..+.+...+++++|+++|+.||++.++|..++..++++.
T Consensus 58 ~g~~l~~~lr~~~-----~~~pii~ls~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~~~ 119 (223)
T PRK10816 58 DGLSLIRRWRSND-----VSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 (223)
T ss_pred CHHHHHHHHHhcC-----CCCCEEEEEcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhcc
Confidence 9999999999742 3589999999999999999999999999999999999999999998764
No 66
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.53 E-value=1.8e-13 Score=148.71 Aligned_cols=119 Identities=24% Similarity=0.439 Sum_probs=109.0
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1101 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~m 1101 (1177)
++||++||++..+..+...|+..|+.|..+.++.+|++.+.. ..||+|++|+.||.+
T Consensus 1 m~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-----------------------~~~dlvild~~~~~~ 57 (227)
T PRK09836 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMT-----------------------GDYDLIILDIMLPDV 57 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhh-----------------------CCCCEEEEECCCCCC
Confidence 379999999999999999999999999999999999987743 469999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
+|+++++.+|+.. +.+|||++|++...+...+++++|+++|+.||++.++|..++..++++.
T Consensus 58 ~g~~~~~~lr~~~-----~~~pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 119 (227)
T PRK09836 58 NGWDIVRMLRSAN-----KGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG 119 (227)
T ss_pred CHHHHHHHHHhcC-----CCCCEEEEEcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhcc
Confidence 9999999999742 3589999999999999999999999999999999999999999988754
No 67
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.51 E-value=3.3e-13 Score=148.02 Aligned_cols=121 Identities=24% Similarity=0.422 Sum_probs=110.6
Q ss_pred CcEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1100 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~ 1100 (1177)
..+|||+||++..+..+...|+..|+.+..+.++.++++.+.. ..||+|++|+.||.
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-----------------------~~~dlvild~~l~~ 61 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTR-----------------------ESFHLMVLDLMLPG 61 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-----------------------CCCCEEEEeCCCCC
Confidence 3589999999999999999999999999999999999988753 47999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCC
Q 001044 1101 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1169 (1177)
Q Consensus 1101 mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~~ 1169 (1177)
++|+++++.||+.. .++|||++|+....+....++++|+++|+.||++.++|..+|..++++..
T Consensus 62 ~~g~~~~~~lr~~~-----~~~pii~ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~r~~ 125 (239)
T PRK09468 62 EDGLSICRRLRSQN-----NPTPIIMLTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLRRQA 125 (239)
T ss_pred CCHHHHHHHHHhcC-----CCCCEEEEECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhcccc
Confidence 99999999999742 35899999999999999999999999999999999999999999987653
No 68
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.51 E-value=2.8e-13 Score=146.44 Aligned_cols=118 Identities=28% Similarity=0.434 Sum_probs=108.5
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1101 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~m 1101 (1177)
.+||+|||++..+..+...|+..|+.|..+.++.+|++.+.. ..||+|++|+.||.+
T Consensus 3 ~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-----------------------~~~dlvild~~l~~~ 59 (221)
T PRK10766 3 YHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQN-----------------------QHVDLILLDINLPGE 59 (221)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc-----------------------CCCCEEEEeCCCCCC
Confidence 589999999999999999999999999999999999988753 469999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
+|+++++.||+. ..+|||++|+..+.....+++++|+++|+.||++.++|..+|..++++.
T Consensus 60 ~g~~~~~~lr~~------~~~~ii~l~~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~r~ 120 (221)
T PRK10766 60 DGLMLTRELRSR------STVGIILVTGRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNLLWRI 120 (221)
T ss_pred CHHHHHHHHHhC------CCCCEEEEECCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHHhhh
Confidence 999999999963 2489999999999999999999999999999999999999999888664
No 69
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.51 E-value=4.2e-13 Score=144.50 Aligned_cols=119 Identities=25% Similarity=0.399 Sum_probs=108.6
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1101 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~m 1101 (1177)
++||+|||++..+..+..+|+..|+.+..+.++.++++.+.. ..||+|++|+.||.+
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-----------------------~~~d~illd~~~~~~ 57 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLES-----------------------GHYSLVVLDLGLPDE 57 (222)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh-----------------------CCCCEEEEECCCCCC
Confidence 379999999999999999999999999999999999998753 369999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
+|+++++.+|+.. ..+|||++|++...+...+++++|+++|+.||++.++|..++..+.++.
T Consensus 58 ~g~~~~~~l~~~~-----~~~pii~ls~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 119 (222)
T PRK10643 58 DGLHLLRRWRQKK-----YTLPVLILTARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIRRH 119 (222)
T ss_pred CHHHHHHHHHhcC-----CCCcEEEEECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhhh
Confidence 9999999999642 3589999999999999999999999999999999999999999888654
No 70
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.51 E-value=4.8e-14 Score=151.96 Aligned_cols=118 Identities=31% Similarity=0.527 Sum_probs=105.6
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1101 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~m 1101 (1177)
++|+||||+...-..+..+|++.|..+..|....||++.+.. ..|||||+|+.||.|
T Consensus 1 ~~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~-----------------------~kpDLifldI~mp~~ 57 (361)
T COG3947 1 PRIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEV-----------------------FKPDLIFLDIVMPYM 57 (361)
T ss_pred CcEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHHh-----------------------cCCCEEEEEeecCCc
Confidence 379999999999999999999999999999999999999974 479999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCC
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1169 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~~ 1169 (1177)
+|+|+.+++|..++ .+|||++|+|+.-.+ .+++.-.+|||.||++++.|..+|.+..++..
T Consensus 58 ngiefaeQvr~i~~-----~v~iifIssh~eya~--dsf~~n~~dYl~KPvt~ekLnraIdr~~k~ve 118 (361)
T COG3947 58 NGIEFAEQVRDIES-----AVPIIFISSHAEYAD--DSFGMNLDDYLPKPVTPEKLNRAIDRRLKRVE 118 (361)
T ss_pred cHHHHHHHHHHhhc-----cCcEEEEecchhhhh--hhcccchHhhccCCCCHHHHHHHHHHHhcccc
Confidence 99999999998864 599999999986543 45666679999999999999999999987653
No 71
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=99.50 E-value=5.2e-13 Score=144.02 Aligned_cols=121 Identities=33% Similarity=0.516 Sum_probs=109.8
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1101 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~m 1101 (1177)
.+||||||++..+..+...|+..|+.+..+.++.++++.+.. ..||+|++|+.||.+
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-----------------------~~~d~vi~d~~~~~~ 59 (226)
T TIGR02154 3 RRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINE-----------------------RGPDLILLDWMLPGT 59 (226)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHh-----------------------cCCCEEEEECCCCCC
Confidence 589999999999999999999999999999999999998753 469999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
+|+++++.||+... .+.+|||++|++.......+++++|+++|+.||++.++|..+|..++++.
T Consensus 60 ~g~~~~~~l~~~~~---~~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 123 (226)
T TIGR02154 60 SGIELCRRLRRRPE---TRAIPIIMLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLRRI 123 (226)
T ss_pred cHHHHHHHHHcccc---CCCCCEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhccc
Confidence 99999999997532 14589999999999999999999999999999999999999999988764
No 72
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.50 E-value=4.1e-13 Score=146.12 Aligned_cols=121 Identities=32% Similarity=0.509 Sum_probs=110.0
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1101 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~m 1101 (1177)
.+||||||++..+..+...|+..|+++..+.++.+|++.+.. ..||+|++|+.||.+
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-----------------------~~~dlvild~~l~~~ 59 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE-----------------------PWPDLILLDWMLPGG 59 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-----------------------cCCCEEEEeCCCCCC
Confidence 589999999999999999999999999999999999998753 469999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
+|+++++.||+... .+.+|||++|++.+.....+++++|+++|+.||++.++|..+|..++++.
T Consensus 60 ~g~~~~~~l~~~~~---~~~~pvi~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~~ 123 (229)
T PRK10161 60 SGIQFIKHLKRESM---TRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 (229)
T ss_pred CHHHHHHHHHhccc---cCCCCEEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 99999999997432 24689999999999999999999999999999999999999999988764
No 73
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.49 E-value=4.8e-13 Score=147.36 Aligned_cols=117 Identities=19% Similarity=0.353 Sum_probs=105.8
Q ss_pred EEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCC
Q 001044 1023 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMD 1102 (1177)
Q Consensus 1023 ~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~md 1102 (1177)
+||+|||++..+..+...|+..|+.+..+.++.++++.+.. ..||+|++|+.||.++
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-----------------------~~~dlvi~d~~l~~~~ 59 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLAS-----------------------ETVDVVVVDLNLGRED 59 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhh-----------------------CCCCEEEEeCCCCCCC
Confidence 79999999999999999999999999999999999998753 4799999999999999
Q ss_pred HHHHHHHHHhcccccCCCCcceEEEecCC-CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1103 GYEATIEIRKSESEHGARNIPIVALTAHA-MNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1103 G~e~~r~IR~~~~~~~~~~ipIIalTa~~-~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
|+++++.||+. .++|||++|+.. ......+++++|+++|+.||++.++|..+++.++++.
T Consensus 60 g~~l~~~i~~~------~~~pii~lt~~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~~~ 120 (241)
T PRK13856 60 GLEIVRSLATK------SDVPIIIISGDRLEEADKVVALELGATDFIAKPFGTREFLARIRVALRVR 120 (241)
T ss_pred HHHHHHHHHhc------CCCcEEEEECCCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHhhc
Confidence 99999999863 258999999954 6667789999999999999999999999999888764
No 74
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.49 E-value=5.3e-13 Score=146.60 Aligned_cols=117 Identities=24% Similarity=0.347 Sum_probs=107.8
Q ss_pred EEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCC
Q 001044 1023 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMD 1102 (1177)
Q Consensus 1023 ~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~md 1102 (1177)
+||+|||++..+..+...|+..|+.+..+.++.+|++.+.. ..||+|++|+.||.++
T Consensus 3 ~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~-----------------------~~~dlvild~~l~~~~ 59 (240)
T PRK10701 3 KIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATILR-----------------------EQPDLVLLDIMLPGKD 59 (240)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHhh-----------------------CCCCEEEEeCCCCCCC
Confidence 79999999999999999999999999999999999998853 4699999999999999
Q ss_pred HHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1103 GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1103 G~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
|+++++.||+. ..+|||++|+........+++++|+++|+.||++..+|..++..++++.
T Consensus 60 g~~~~~~ir~~------~~~pii~l~~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~~~ 119 (240)
T PRK10701 60 GMTICRDLRPK------WQGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 (240)
T ss_pred HHHHHHHHHhc------CCCCEEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 99999999973 2479999999999888999999999999999999999999999888764
No 75
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.48 E-value=5e-13 Score=147.64 Aligned_cols=117 Identities=20% Similarity=0.323 Sum_probs=102.6
Q ss_pred cEEEEEecChHHHHHHHHHHhh-cCCEE-EEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEK-VGATV-SVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1099 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~-~G~~v-~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP 1099 (1177)
++||||||++..+..+..+|+. .|+.+ ..+.++.+|++.+.. ....||+||+|+.||
T Consensus 2 ~~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~---------------------~~~~~DlvilD~~~p 60 (239)
T PRK10430 2 INVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFN---------------------SDTPIDLILLDIYMQ 60 (239)
T ss_pred eeEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh---------------------cCCCCCEEEEecCCC
Confidence 4799999999999999999986 47764 478999999998742 124699999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Q 001044 1100 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL 1164 (1177)
Q Consensus 1100 ~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1164 (1177)
.|||+++++.||+.. +.+|||++|++.......+++++|+++|+.||++.++|..+|.++
T Consensus 61 ~~~G~eli~~l~~~~-----~~~~vI~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~~ 120 (239)
T PRK10430 61 QENGLDLLPVLHEAG-----CKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 (239)
T ss_pred CCCcHHHHHHHHhhC-----CCCCEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 999999999999752 358999999999999999999999999999999999999999763
No 76
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.48 E-value=7.8e-13 Score=142.24 Aligned_cols=119 Identities=31% Similarity=0.433 Sum_probs=108.3
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1101 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~m 1101 (1177)
++||||||++..+..+..+|+..|+.+..+.++.++++.+.. ..||+|++|+.||.+
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-----------------------~~~dlvild~~l~~~ 57 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYS-----------------------APYDAVILDLTLPGM 57 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh-----------------------CCCCEEEEECCCCCC
Confidence 379999999999999999999999999999999999987752 369999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
+|+++++.||+.. +.+|||++|++...+...+++++|+++|+.||++.++|..+|..++++.
T Consensus 58 ~g~~~~~~i~~~~-----~~~~ii~lt~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~ 119 (219)
T PRK10336 58 DGRDILREWREKG-----QREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 (219)
T ss_pred CHHHHHHHHHhcC-----CCCcEEEEECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHhcc
Confidence 9999999999742 4589999999999999999999999999999999999999999887654
No 77
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.48 E-value=5.7e-13 Score=144.80 Aligned_cols=116 Identities=32% Similarity=0.541 Sum_probs=106.3
Q ss_pred EEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCC
Q 001044 1023 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMD 1102 (1177)
Q Consensus 1023 ~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~md 1102 (1177)
+||||||++..+..+...|+..|+.+..+.++.++++.+. ..||+|++|+.||.++
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~------------------------~~~d~vl~d~~~~~~~ 58 (232)
T PRK10955 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD------------------------DSIDLLLLDVMMPKKN 58 (232)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhh------------------------cCCCEEEEeCCCCCCc
Confidence 7999999999999999999999999999999999998763 2599999999999999
Q ss_pred HHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1103 GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1103 G~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
|+++++.||+.. .+|||++|+........+++++|+++|+.||++.++|..+|..++++.
T Consensus 59 g~~~~~~l~~~~------~~~ii~lt~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 118 (232)
T PRK10955 59 GIDTLKELRQTH------QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 (232)
T ss_pred HHHHHHHHHhcC------CCcEEEEECCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHhcc
Confidence 999999999641 289999999999888899999999999999999999999999988654
No 78
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=99.48 E-value=5.8e-13 Score=148.97 Aligned_cols=121 Identities=22% Similarity=0.383 Sum_probs=106.3
Q ss_pred CcEEEEEecChHHHHHHHHHHhhc-CCEE-EEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEKV-GATV-SVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1098 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~~-G~~v-~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~M 1098 (1177)
.++||||||++..+..+..+|+.. ++.+ ..+.+|.+|++.+.. ..||+|++|+.|
T Consensus 2 ~~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~~-----------------------~~~DlvllD~~m 58 (262)
T TIGR02875 2 KIRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIKE-----------------------QQPDVVVLDIIM 58 (262)
T ss_pred CcEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHh-----------------------cCCCEEEEeCCC
Confidence 368999999999999999999864 5555 479999999998863 469999999999
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001044 1099 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1167 (1177)
Q Consensus 1099 P~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~ 1167 (1177)
|.|||++++++||+.... ..+|||++|+........+++++|+++|+.||++.++|..+|.++..+
T Consensus 59 p~~dG~~~l~~i~~~~~~---~~~~iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~~ 124 (262)
T TIGR02875 59 PHLDGIGVLEKLNEIELS---ARPRVIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAWG 124 (262)
T ss_pred CCCCHHHHHHHHHhhccc---cCCeEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 999999999999975331 348999999999999999999999999999999999999999988754
No 79
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.47 E-value=1.1e-12 Score=141.80 Aligned_cols=118 Identities=26% Similarity=0.459 Sum_probs=108.0
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1101 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~m 1101 (1177)
++||+|||++..+..+...|+..|+.+..+.++.+++..+.. ..||+|++|+.||.+
T Consensus 1 m~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~~-----------------------~~~dlvi~d~~~~~~ 57 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALK-----------------------DDYALIILDIMLPGM 57 (223)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-----------------------CCCCEEEEECCCCCC
Confidence 379999999999999999999999999999999999998753 479999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
+|+++++.||+. ..+|||++|+....+...+++++|+++|+.||++.++|..+|..++++.
T Consensus 58 ~g~~~~~~l~~~------~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 118 (223)
T PRK11517 58 DGWQILQTLRTA------KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH 118 (223)
T ss_pred CHHHHHHHHHcC------CCCCEEEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHccc
Confidence 999999999963 2489999999999999999999999999999999999999999988654
No 80
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=99.47 E-value=9.9e-13 Score=142.74 Aligned_cols=118 Identities=26% Similarity=0.383 Sum_probs=107.7
Q ss_pred EEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC--
Q 001044 1023 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK-- 1100 (1177)
Q Consensus 1023 ~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~-- 1100 (1177)
+||||||++..+..+...|+..|+.+..+.++.++++.+.. ..||+|++|+.||.
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-----------------------~~~dlvild~~l~~~~ 58 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQ-----------------------RLPDLAIIDIGLGEEI 58 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHHh-----------------------CCCCEEEEECCCCCCC
Confidence 69999999999999999999999999999999999998753 46999999999998
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1101 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1101 mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
++|+++++.||+.. +++|||++|++...+....++++|+++|+.||++.++|..+|+.++++.
T Consensus 59 ~~g~~~~~~i~~~~-----~~~pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 121 (227)
T TIGR03787 59 DGGFMLCQDLRSLS-----ATLPIIFLTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFRRA 121 (227)
T ss_pred CCHHHHHHHHHhcC-----CCCCEEEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 58999999999742 3589999999999999999999999999999999999999999988754
No 81
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=99.44 E-value=4.2e-13 Score=160.78 Aligned_cols=117 Identities=18% Similarity=0.275 Sum_probs=92.3
Q ss_pred EEeCHHHHHHHHHHHHhhHhhccCCCe----EEEEeeccccCCCCCCCcCCcccccccchhhhhhhhhhcccccccCCCc
Q 001044 605 VRGDPGRVFQIFSNLINNSIKFTSSGH----IIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNK 680 (1177)
Q Consensus 605 V~gD~~rL~QIL~NLL~NAIKfT~~G~----v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (1177)
+.++...|.|++.|||+||++|++.++ |.|.+... ..+.
T Consensus 30 f~~p~~~L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~-------------------------------------~~~~ 72 (535)
T PRK04184 30 FDNPARALYTTVKELVDNSLDACEEAGILPDIKIEIKRV-------------------------------------DEGK 72 (535)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHhhhcCCCceEEEEEEEc-------------------------------------cCCC
Confidence 456678899999999999999997643 44433110 0122
Q ss_pred eEEEEEEEeCCCCCChhhHhhhhcccccCCCCCC--CCCCccchhHHHHHHHHHHcCCE-EEEEEeCCCce-EEEEEEec
Q 001044 681 LALCFEVDDTGCGIDQSKWETVFESFEQGDPSTT--RKHGGTGLGLSIVRTLVNKMGGE-IKVVKKNSPGT-LMQLYLLL 756 (1177)
Q Consensus 681 ~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~--~~~~GtGLGLaIvk~IVe~~GG~-I~v~S~~g~GT-~f~~~Lpl 756 (1177)
..+.|+|.|+|+||++++++++|++|+.++.... ...||+||||++|+.++++|+|. |+|.|..+.|+ .|+|.|++
T Consensus 73 ~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK~~~~~~s~G~~GLGLsiv~~isq~~~G~~I~V~S~~~~g~~~~~~~l~i 152 (535)
T PRK04184 73 DHYRVTVEDNGPGIPPEEIPKVFGKLLYGSKFHNLRQSRGQQGIGISAAVLYAQMTTGKPVRVISSTGGSKKAYYFELKI 152 (535)
T ss_pred cEEEEEEEcCCCCCCHHHHHHHhhhhhccccccccccCCCCCCcchHHHHHHHHHhcCCcEEEEEecCCCceEEEEEEEe
Confidence 3467999999999999999999999987654322 23478999999999999999997 99999999998 89999987
Q ss_pred CC
Q 001044 757 GA 758 (1177)
Q Consensus 757 ~~ 758 (1177)
..
T Consensus 153 d~ 154 (535)
T PRK04184 153 DT 154 (535)
T ss_pred cc
Confidence 54
No 82
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.44 E-value=2.1e-12 Score=139.72 Aligned_cols=119 Identities=25% Similarity=0.435 Sum_probs=108.4
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1101 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~m 1101 (1177)
.+||||||++..+..+...|+..|+.+..+.++.++++.+.. ..||+|++|+.||.+
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-----------------------~~~dlvl~d~~~~~~ 60 (228)
T PRK11083 4 PTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQ-----------------------QPPDLVILDVGLPDI 60 (228)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhc-----------------------CCCCEEEEeCCCCCC
Confidence 489999999999999999999999999999999999987742 469999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
+|+++++.||+.. +.+|||++|++........++++|+++|+.||++.++|..+|..++++.
T Consensus 61 ~g~~~~~~l~~~~-----~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 122 (228)
T PRK11083 61 SGFELCRQLLAFH-----PALPVIFLTARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRRV 122 (228)
T ss_pred CHHHHHHHHHhhC-----CCCCEEEEEcCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHHHCcc
Confidence 9999999999742 4589999999998888899999999999999999999999999888764
No 83
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=99.43 E-value=2.4e-12 Score=138.17 Aligned_cols=118 Identities=27% Similarity=0.456 Sum_probs=107.6
Q ss_pred EEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCH
Q 001044 1024 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDG 1103 (1177)
Q Consensus 1024 ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~mdG 1103 (1177)
||++||++..+..+...|+..|+.+..+.++.++++.+.. ..||+|++|+.||.++|
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-----------------------~~~dlvl~d~~~~~~~g 57 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLALK-----------------------DDYDLIILDVMLPGMDG 57 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-----------------------CCCCEEEEeCCCCCCCH
Confidence 5899999999999999999999999999999999998753 46999999999999999
Q ss_pred HHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCC
Q 001044 1104 YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1169 (1177)
Q Consensus 1104 ~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~~ 1169 (1177)
+++++.||+.. +++|||++|+....+...+++++|+++|+.||++.++|..++..++++..
T Consensus 58 ~~~~~~l~~~~-----~~~~iivls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~ 118 (218)
T TIGR01387 58 WQILQTLRRSG-----KQTPVLFLTARDSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLRRSH 118 (218)
T ss_pred HHHHHHHHccC-----CCCcEEEEEcCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhcccc
Confidence 99999999642 45899999999999999999999999999999999999999999886643
No 84
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.43 E-value=2.2e-12 Score=140.02 Aligned_cols=120 Identities=19% Similarity=0.279 Sum_probs=106.0
Q ss_pred CcEEEEEecChHHHHHHHHHHhhcCC-E-EEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEKVGA-T-VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1098 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~~G~-~-v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~M 1098 (1177)
+++||||||++..+..++.+|+..++ . +..+.++.++++.+.. ..||+||+|+.|
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~-----------------------~~~DlvllD~~l 59 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPK-----------------------LDAHVLITDLSM 59 (216)
T ss_pred ceEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHh-----------------------CCCCEEEEeCcC
Confidence 36899999999999999999987665 3 6678999999998753 369999999999
Q ss_pred CC---CCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1099 PK---MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1099 P~---mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
|+ ++|++++++||+.. +++|||++|++.......+++++|+++|+.||.+.++|..+|+.+..+.
T Consensus 60 ~~~~~~~g~~~~~~l~~~~-----~~~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~g~ 127 (216)
T PRK10840 60 PGDKYGDGITLIKYIKRHF-----PSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKGK 127 (216)
T ss_pred CCCCCCCHHHHHHHHHHHC-----CCCcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHCCC
Confidence 99 59999999999642 4589999999999988899999999999999999999999999887644
No 85
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.42 E-value=3.2e-12 Score=139.64 Aligned_cols=119 Identities=29% Similarity=0.510 Sum_probs=108.3
Q ss_pred CcEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1100 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~ 1100 (1177)
.++||++||++..+..+...|+..|+.+..+.++.++++.+.. ..||+|++|+.||.
T Consensus 6 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~~-----------------------~~~d~illd~~~~~ 62 (240)
T CHL00148 6 KEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRK-----------------------EQPDLVILDVMMPK 62 (240)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh-----------------------cCCCEEEEeCCCCC
Confidence 4689999999999999999999999999999999999997753 46999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1101 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1101 mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
++|+++++.||+. .++|||++|++.......+++++|+++|+.||++.++|..+|..++++.
T Consensus 63 ~~g~~~~~~l~~~------~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~~ 124 (240)
T CHL00148 63 LDGYGVCQEIRKE------SDVPIIMLTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLRRT 124 (240)
T ss_pred CCHHHHHHHHHhc------CCCcEEEEECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 9999999999963 2589999999999988899999999999999999999999999887654
No 86
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.41 E-value=3.6e-12 Score=135.83 Aligned_cols=119 Identities=18% Similarity=0.348 Sum_probs=107.4
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCCEEE-EEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1100 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~~v~-~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~ 1100 (1177)
++||++||++..+..+...|+..|+.+. .+.++.++++.+.. ..||+|++|+.||.
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~-----------------------~~~dlvi~d~~~~~ 57 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVET-----------------------LKPDIVIIDVDIPG 57 (204)
T ss_pred CcEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHc-----------------------cCCCEEEEeCCCCC
Confidence 3799999999999999999999999987 69999999998753 46999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1101 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1101 mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
++|+++++.+|+.. +.+|||++|++........++++|+++|+.||++.++|..+|..+.++.
T Consensus 58 ~~g~~~~~~l~~~~-----~~~~ii~ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~ 120 (204)
T PRK09958 58 VNGIQVLETLRKRQ-----YSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 (204)
T ss_pred CCHHHHHHHHHhhC-----CCCeEEEEeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHHHcCC
Confidence 99999999999742 3478999999999999999999999999999999999999999987653
No 87
>PRK14084 two-component response regulator; Provisional
Probab=99.40 E-value=3.8e-12 Score=140.83 Aligned_cols=116 Identities=22% Similarity=0.393 Sum_probs=100.6
Q ss_pred cEEEEEecChHHHHHHHHHHhhcC-C-EEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVG-A-TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1099 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G-~-~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP 1099 (1177)
++|||+||++..+..+..+|+..+ + .+..+.++++|++.+.. ..||+||+|+.||
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~~-----------------------~~~dlv~lDi~m~ 57 (246)
T PRK14084 1 MKALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLI-----------------------NQYDIIFLDINLM 57 (246)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHHh-----------------------cCCCEEEEeCCCC
Confidence 479999999999999999999765 4 57789999999998853 3699999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001044 1100 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1167 (1177)
Q Consensus 1100 ~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~ 1167 (1177)
+|+|+++++.||+.. ...|||++|++.. ...+++++|+++||.||++.++|..++.++.+.
T Consensus 58 ~~~G~~~~~~i~~~~-----~~~~iI~~t~~~~--~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~~~~ 118 (246)
T PRK14084 58 DESGIELAAKIQKMK-----EPPAIIFATAHDQ--FAVKAFELNATDYILKPFEQKRIEQAVNKVRAT 118 (246)
T ss_pred CCCHHHHHHHHHhcC-----CCCEEEEEecChH--HHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHh
Confidence 999999999999753 3478999998754 456899999999999999999999999988754
No 88
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=99.40 E-value=4.2e-12 Score=120.19 Aligned_cols=109 Identities=44% Similarity=0.656 Sum_probs=92.1
Q ss_pred eCHHHHHHHHHHHHhhHhhccCC-CeEEEEeeccccCCCCCCCcCCcccccccchhhhhhhhhhcccccccCCCceEEEE
Q 001044 607 GDPGRVFQIFSNLINNSIKFTSS-GHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCF 685 (1177)
Q Consensus 607 gD~~rL~QIL~NLL~NAIKfT~~-G~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 685 (1177)
+|+..|.+++.|++.||+++... +.+.|.++.. ...+.+
T Consensus 1 ~~~~~l~~~~~~l~~n~~~~~~~~~~v~i~~~~~----------------------------------------~~~~~i 40 (111)
T smart00387 1 GDPDRLRQVLSNLLDNAIKYTPEGGRITVTLERD----------------------------------------GDHLEI 40 (111)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEc----------------------------------------CCEEEE
Confidence 57889999999999999999986 6676654321 124779
Q ss_pred EEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEec
Q 001044 686 EVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 756 (1177)
Q Consensus 686 ~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~IVe~~GG~I~v~S~~g~GT~f~~~Lpl 756 (1177)
.|.|+|.|++++.++++|.+++.... .....++.|+||++|+.+++.|+|++.+.+.++.|++|+|.+|+
T Consensus 41 ~i~d~g~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~ 110 (111)
T smart00387 41 TVEDNGPGIPPEDLEKIFEPFFRTDG-RSRKIGGTGLGLSIVKKLVELHGGEISVESEPGGGTTFTITLPL 110 (111)
T ss_pred EEEeCCCCCCHHHHHHHhcCeEECCC-CCCCCCcccccHHHHHHHHHHcCCEEEEEecCCCcEEEEEEeeC
Confidence 99999999999999999999987653 22335679999999999999999999999988999999999986
No 89
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.37 E-value=6e-12 Score=152.89 Aligned_cols=117 Identities=26% Similarity=0.396 Sum_probs=107.8
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1101 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~m 1101 (1177)
.+||||||++..+..+..+|+..|+.|..+.++.+|+..+.. ..||+||+|+.||+|
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~~-----------------------~~~DlvllD~~lp~~ 60 (469)
T PRK10923 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALAS-----------------------KTPDVLLSDIRMPGM 60 (469)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc-----------------------CCCCEEEECCCCCCC
Confidence 489999999999999999999999999999999999998853 479999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1166 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~ 1166 (1177)
||+++++.||+.. +.+|||++|++...+....++++|+++|+.||++.++|...|.+++.
T Consensus 61 dgl~~l~~ir~~~-----~~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 120 (469)
T PRK10923 61 DGLALLKQIKQRH-----PMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 (469)
T ss_pred CHHHHHHHHHhhC-----CCCeEEEEECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHHH
Confidence 9999999999742 45899999999999999999999999999999999999999987764
No 90
>PRK15115 response regulator GlrR; Provisional
Probab=99.37 E-value=4.8e-12 Score=152.61 Aligned_cols=119 Identities=29% Similarity=0.461 Sum_probs=109.2
Q ss_pred CcEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1100 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~ 1100 (1177)
..+||||||++.++..+..+|+..|+.|..+.++.+|++.+.. ..||+||+|+.||+
T Consensus 5 ~~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~~-----------------------~~~dlvilD~~lp~ 61 (444)
T PRK15115 5 PAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLNR-----------------------EKVDLVISDLRMDE 61 (444)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc-----------------------CCCCEEEEcCCCCC
Confidence 3689999999999999999999999999999999999998853 46999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001044 1101 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1167 (1177)
Q Consensus 1101 mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~ 1167 (1177)
|+|+++++.|++.. +.+|||++|++...+...+++++|+++|+.||++.++|..+|..++..
T Consensus 62 ~~g~~ll~~l~~~~-----~~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 123 (444)
T PRK15115 62 MDGMQLFAEIQKVQ-----PGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDALEQ 123 (444)
T ss_pred CCHHHHHHHHHhcC-----CCCcEEEEECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHHHh
Confidence 99999999999642 458999999999999999999999999999999999999999988764
No 91
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.37 E-value=4e-12 Score=125.07 Aligned_cols=114 Identities=22% Similarity=0.328 Sum_probs=106.1
Q ss_pred EEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCC
Q 001044 1023 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMD 1102 (1177)
Q Consensus 1023 ~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~md 1102 (1177)
..|||||+..+...+.+.|++.||.|.+|++.+||+..++. .+|...++|+.|-+-+
T Consensus 11 ~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art-----------------------~~PayAvvDlkL~~gs 67 (182)
T COG4567 11 SLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAART-----------------------APPAYAVVDLKLGDGS 67 (182)
T ss_pred eeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhc-----------------------CCCceEEEEeeecCCC
Confidence 68999999999999999999999999999999999999974 4799999999999999
Q ss_pred HHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Q 001044 1103 GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL 1164 (1177)
Q Consensus 1103 G~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1164 (1177)
|+++++.||+.. .+..||+||++++......+.+.|+++||.||-+.+++..++.+-
T Consensus 68 GL~~i~~lr~~~-----~d~rivvLTGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~~ 124 (182)
T COG4567 68 GLAVIEALRERR-----ADMRIVVLTGYASIATAVEAVKLGACDYLAKPADADDILAALLRR 124 (182)
T ss_pred chHHHHHHHhcC-----CcceEEEEecchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhhc
Confidence 999999999864 358899999999999999999999999999999999999887655
No 92
>PRK09483 response regulator; Provisional
Probab=99.37 E-value=1.1e-11 Score=133.34 Aligned_cols=119 Identities=30% Similarity=0.439 Sum_probs=106.8
Q ss_pred cEEEEEecChHHHHHHHHHHhhc-CCEEE-EEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKV-GATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1099 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~-G~~v~-~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP 1099 (1177)
++|||+||++..+..+..+|+.. |+.+. .+.++.++++.+.. .+||+|++|+.||
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~-----------------------~~~dlvi~d~~~~ 58 (217)
T PRK09483 2 INVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRT-----------------------NAVDVVLMDMNMP 58 (217)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHHh-----------------------cCCCEEEEeCCCC
Confidence 47999999999999999999874 88876 78999999998853 4699999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1100 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1100 ~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
+++|+++++.|++.. +++|||++|.+.......+++.+|+++|+.||++.++|..+|.++..+.
T Consensus 59 ~~~g~~~~~~l~~~~-----~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~g~ 122 (217)
T PRK09483 59 GIGGLEATRKILRYT-----PDVKIIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSGQ 122 (217)
T ss_pred CCCHHHHHHHHHHHC-----CCCeEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 999999999998742 4589999999999999999999999999999999999999999887654
No 93
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.36 E-value=6.9e-12 Score=145.87 Aligned_cols=116 Identities=31% Similarity=0.432 Sum_probs=99.9
Q ss_pred cEEEEEecChHHHHHHHHHH-hhcCCEEE-EEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKIL-EKVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1099 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L-~~~G~~v~-~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP 1099 (1177)
++||||||++..+..+..+| +..|+++. .+.|+++|++.+.. ..||+|+||+.||
T Consensus 1 ~~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~~-----------------------~~pDlVllD~~mp 57 (337)
T PRK12555 1 MRIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCAA-----------------------QPPDVILMDLEMP 57 (337)
T ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhc-----------------------cCCCEEEEcCCCC
Confidence 37999999999999999999 46688886 78999999998853 4799999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEecCCC--HHHHHHHHHcCCCEEEECCC---------CHHHHHHHHHHHhh
Q 001044 1100 KMDGYEATIEIRKSESEHGARNIPIVALTAHAM--NADEKKCLGVGMNAYLTKPI---------DSERMVSTILRLTK 1166 (1177)
Q Consensus 1100 ~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~--~~~~~~~l~aG~d~yL~KP~---------~~~~L~~~I~~l~~ 1166 (1177)
+|+|++++++|++. ..+|||++|+... .....+|+++|+++|+.||+ ..++|..+|+.+.+
T Consensus 58 ~~~G~e~l~~l~~~------~~~pvivvs~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~~~~~~~~l~~~i~~~~~ 129 (337)
T PRK12555 58 RMDGVEATRRIMAE------RPCPILIVTSLTERNASRVFEAMGAGALDAVDTPTLGIGAGLEEYAAELLAKIDQIGR 129 (337)
T ss_pred CCCHHHHHHHHHHH------CCCcEEEEeCCCCcCHHHHHHHHhcCceEEEECCCCCcchhHHHHHHHHHHHHHHHhh
Confidence 99999999999873 2489999998754 45567899999999999999 67788888887764
No 94
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.36 E-value=1.1e-11 Score=131.10 Aligned_cols=116 Identities=17% Similarity=0.324 Sum_probs=102.8
Q ss_pred cEEEEEecChHHHHHHHHHHhhc-CCE-EEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKV-GAT-VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1099 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~-G~~-v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP 1099 (1177)
.+||||||++..+..+..+|+.. |+. +..+.++.++++.+.. ..||+|++|+.||
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~dlvi~d~~~~ 58 (196)
T PRK10360 2 ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPG-----------------------RGVQVCICDISMP 58 (196)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHhc-----------------------CCCCEEEEeCCCC
Confidence 37999999999999999999754 565 5688999999998852 4699999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1100 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1100 ~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
.++|+++++.++. .+|||++|++...+....++++|+++|+.||++.++|..+|+.+.++.
T Consensus 59 ~~~g~~~~~~l~~--------~~~vi~~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~ 119 (196)
T PRK10360 59 DISGLELLSQLPK--------GMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGG 119 (196)
T ss_pred CCCHHHHHHHHcc--------CCCEEEEECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCC
Confidence 9999999998862 379999999999999999999999999999999999999999988653
No 95
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.36 E-value=1.6e-11 Score=130.97 Aligned_cols=119 Identities=17% Similarity=0.332 Sum_probs=106.1
Q ss_pred cEEEEEecChHHHHHHHHHHhhc-CCEEE-EEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKV-GATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1099 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~-G~~v~-~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP 1099 (1177)
.+|||+||++..+..+...|+.. ++.+. .+.++.++++.+.. .+||+|++|+.||
T Consensus 4 ~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~dlvild~~l~ 60 (210)
T PRK09935 4 ASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRT-----------------------RPVDLIIMDIDLP 60 (210)
T ss_pred ceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHHh-----------------------cCCCEEEEeCCCC
Confidence 58999999999999999999876 57775 68899999988753 4799999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1100 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1100 ~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
.++|+++++.+|+.. +.+|||++|++.......+++++|+++|+.||++.++|..+|..++++.
T Consensus 61 ~~~g~~~~~~l~~~~-----~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~~~ 124 (210)
T PRK09935 61 GTDGFTFLKRIKQIQ-----STVKVLFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSGY 124 (210)
T ss_pred CCCHHHHHHHHHHhC-----CCCcEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHcCC
Confidence 999999999999742 3589999999999888999999999999999999999999999887764
No 96
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.35 E-value=5.3e-12 Score=152.05 Aligned_cols=118 Identities=28% Similarity=0.427 Sum_probs=108.2
Q ss_pred CcEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1100 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~ 1100 (1177)
.++||||||++..+..+..+|+..|+.+..+.++.+|++.+.. ..||+||+|+.||.
T Consensus 5 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~-----------------------~~~DlvilD~~m~~ 61 (441)
T PRK10365 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRE-----------------------QVFDLVLCDVRMAE 61 (441)
T ss_pred cceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHhc-----------------------CCCCEEEEeCCCCC
Confidence 4689999999999999999999999999999999999998752 46999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001044 1101 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1166 (1177)
Q Consensus 1101 mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~ 1166 (1177)
|+|++++++||+.. +++|||++|++...+...+++++|+++|+.||++.++|..+|.++++
T Consensus 62 ~~G~~~~~~ir~~~-----~~~~vi~lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l~ 122 (441)
T PRK10365 62 MDGIATLKEIKALN-----PAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 (441)
T ss_pred CCHHHHHHHHHhhC-----CCCeEEEEECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHHHH
Confidence 99999999999752 45899999999999999999999999999999999999999987764
No 97
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.35 E-value=1e-11 Score=150.37 Aligned_cols=118 Identities=26% Similarity=0.389 Sum_probs=108.0
Q ss_pred CcEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1100 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~ 1100 (1177)
..+||||||++..+..+...|+..|+.|..+.++.+|++.+.. ..||+|++|+.||.
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~-----------------------~~~dlillD~~~p~ 60 (457)
T PRK11361 4 INRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFAD-----------------------IHPDVVLMDIRMPE 60 (457)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-----------------------CCCCEEEEeCCCCC
Confidence 3589999999999999999999999999999999999998853 46999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001044 1101 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1166 (1177)
Q Consensus 1101 mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~ 1166 (1177)
|+|+++++.||+.. +.+|||++|++...+...+++++|+++|+.||++.++|...|.+++.
T Consensus 61 ~~g~~ll~~i~~~~-----~~~pvI~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~ 121 (457)
T PRK11361 61 MDGIKALKEMRSHE-----TRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQ 121 (457)
T ss_pred CCHHHHHHHHHhcC-----CCCCEEEEeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhcc
Confidence 99999999999742 45899999999999999999999999999999999999999987664
No 98
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.34 E-value=1.1e-11 Score=136.07 Aligned_cols=115 Identities=28% Similarity=0.456 Sum_probs=98.1
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCC-E-EEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGA-T-VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1099 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~-~-v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP 1099 (1177)
++|||+||++..+..+..+|+..|. . +..+.++.++++.+.. ..||+||+|+.||
T Consensus 2 ~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~dlv~lDi~~~ 58 (238)
T PRK11697 2 IKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIHR-----------------------LKPDVVFLDIQMP 58 (238)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHHh-----------------------cCCCEEEEeCCCC
Confidence 5899999999999999999998873 3 4568999999988753 3699999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001044 1100 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1167 (1177)
Q Consensus 1100 ~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~ 1167 (1177)
+|||+++++.++.. ...+||++|++. +...++++.|+++||.||++.++|..++.++.+.
T Consensus 59 ~~~G~~~~~~l~~~------~~~~ii~vt~~~--~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~~~~ 118 (238)
T PRK11697 59 RISGLELVGMLDPE------HMPYIVFVTAFD--EYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQE 118 (238)
T ss_pred CCCHHHHHHHhccc------CCCEEEEEeccH--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHh
Confidence 99999999998632 235789999875 4567899999999999999999999999888754
No 99
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.34 E-value=9.9e-12 Score=149.98 Aligned_cols=113 Identities=19% Similarity=0.296 Sum_probs=102.9
Q ss_pred EEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC---
Q 001044 1024 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK--- 1100 (1177)
Q Consensus 1024 ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~--- 1100 (1177)
||||||++..+..+...| .||.|..+.++.+|++.+.. ..||+||+|+.||.
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~~-----------------------~~~dlvllD~~mp~~~~ 55 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVRR-----------------------HEPAVVTLDLGLPPDAD 55 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHhh-----------------------CCCCEEEEeCCCCCCcC
Confidence 689999999999999988 79999999999999999863 36999999999996
Q ss_pred --CCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001044 1101 --MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1166 (1177)
Q Consensus 1101 --mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~ 1166 (1177)
|+|++++++|++.. +++|||++|++.+.+...+|+++|+++||.||++.++|..+|.++++
T Consensus 56 ~~~~g~~~l~~i~~~~-----~~~piI~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~ 118 (445)
T TIGR02915 56 GASEGLAALQQILAIA-----PDTKVIVITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAFH 118 (445)
T ss_pred CCCCHHHHHHHHHhhC-----CCCCEEEEecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhhh
Confidence 99999999998752 46899999999999999999999999999999999999999977654
No 100
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.34 E-value=2.7e-11 Score=132.35 Aligned_cols=118 Identities=27% Similarity=0.449 Sum_probs=107.5
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1101 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~m 1101 (1177)
.+||++||++..+..+..+|+..|+.+..+.++.+|++.+.. ..||+|++|+.||.+
T Consensus 11 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-----------------------~~~dlvl~d~~~~~~ 67 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVRQ-----------------------TPPDLILLDLMLPGT 67 (240)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh-----------------------CCCCEEEEeCCCCCC
Confidence 389999999999999999999999999999999999998753 469999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
+|+++++.||+. ..+|||+++++........++++|+++|+.||++.++|..+|..++++.
T Consensus 68 ~g~~~~~~l~~~------~~~pii~l~~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~~~~~ 128 (240)
T PRK10710 68 DGLTLCREIRRF------SDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 (240)
T ss_pred CHHHHHHHHHhc------CCCCEEEEEcCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHhhc
Confidence 999999999952 3589999999998888899999999999999999999999998887653
No 101
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=99.33 E-value=3.3e-11 Score=129.62 Aligned_cols=119 Identities=35% Similarity=0.509 Sum_probs=107.6
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1101 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~m 1101 (1177)
++||++||++..+..+...|+..|+.+..+.++.++++.+.. ..||+|++|+.||.+
T Consensus 1 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-----------------------~~~d~vild~~~~~~ 57 (221)
T PRK15479 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQS-----------------------EMYALAVLDINMPGM 57 (221)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh-----------------------CCCCEEEEeCCCCCC
Confidence 379999999999999999999999999999999999887753 469999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
+|+++++.||+.. .++|||++|++...+...+++++|+++|+.||++.++|..++..++++.
T Consensus 58 ~~~~~~~~i~~~~-----~~~~ii~lt~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~ 119 (221)
T PRK15479 58 DGLEVLQRLRKRG-----QTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRS 119 (221)
T ss_pred cHHHHHHHHHhcC-----CCCCEEEEECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhhh
Confidence 9999999999753 3589999999999988899999999999999999999999998887654
No 102
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.32 E-value=1.4e-11 Score=149.47 Aligned_cols=115 Identities=27% Similarity=0.421 Sum_probs=105.6
Q ss_pred EEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCH
Q 001044 1024 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDG 1103 (1177)
Q Consensus 1024 ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~mdG 1103 (1177)
||||||++..+..+...|+..|+.|..+.++.+|++.+.. ..||+|++|+.||+|+|
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-----------------------~~~DlVllD~~~p~~~g 57 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALAR-----------------------GQPDLLITDVRMPGEDG 57 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc-----------------------CCCCEEEEcCCCCCCCH
Confidence 6899999999999999999999999999999999998753 46999999999999999
Q ss_pred HHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001044 1104 YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1166 (1177)
Q Consensus 1104 ~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~ 1166 (1177)
+++++.||+.. +.+|||++|++.......+++++|+++|+.||++.++|..+|.+++.
T Consensus 58 ~~ll~~l~~~~-----~~~~vIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 115 (463)
T TIGR01818 58 LDLLPQIKKRH-----PQLPVIVMTAHSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERALA 115 (463)
T ss_pred HHHHHHHHHhC-----CCCeEEEEeCCCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHHH
Confidence 99999999742 45899999999999999999999999999999999999999988754
No 103
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.29 E-value=2.7e-11 Score=131.83 Aligned_cols=115 Identities=15% Similarity=0.160 Sum_probs=95.2
Q ss_pred CcEEEEEecChHHHHHHHHHHhhcCCE-EEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEKVGAT-VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1099 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~~G~~-v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP 1099 (1177)
..++++|||+|..+..+..+|+. ++. +..+.++.+|++.+ .+||+||||+.||
T Consensus 10 ~~~~~~v~~~~l~~~~l~~~L~~-~~~v~~~~~~~~~~~~~~-------------------------~~~DvvllDi~~p 63 (216)
T PRK10100 10 GHTLLLITKPSLQATALLQHLKQ-SLAITGKLHNIQRSLDDI-------------------------SSGSIILLDMMEA 63 (216)
T ss_pred CceEEEEeChHhhhHHHHHHHHH-hCCCeEEEcCHHHhhccC-------------------------CCCCEEEEECCCC
Confidence 35799999999999999999984 454 55788999988864 1499999999999
Q ss_pred CCCHHHHH-HHHHhcccccCCCCcceEEEecCCCHHHHHHHHH--cCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1100 KMDGYEAT-IEIRKSESEHGARNIPIVALTAHAMNADEKKCLG--VGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1100 ~mdG~e~~-r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~--aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
+++|++++ +.||+.. ++++||++|++... ...++. +|+++|+.|+.+.++|.++|+.+.++.
T Consensus 64 ~~~G~~~~~~~i~~~~-----p~~~vvvlt~~~~~--~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~G~ 128 (216)
T PRK10100 64 DKKLIHYWQDTLSRKN-----NNIKILLLNTPEDY--PYREIENWPHINGVFYAMEDQERVVNGLQGVLRGE 128 (216)
T ss_pred CccHHHHHHHHHHHhC-----CCCcEEEEECCchh--HHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHcCC
Confidence 99999997 5678643 45899999998763 334555 599999999999999999999887654
No 104
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.28 E-value=5.4e-11 Score=139.36 Aligned_cols=117 Identities=26% Similarity=0.463 Sum_probs=98.4
Q ss_pred CcEEEEEecChHHHHHHHHHHhhc-CCEEE-EEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEKV-GATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1098 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~~-G~~v~-~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~M 1098 (1177)
.++||||||++.++..+..+|+.. |+.+. .+.++.+|++.+.. ..||+|++|+.|
T Consensus 3 ~~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~~-----------------------~~~DlVllD~~m 59 (354)
T PRK00742 3 KIRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIKK-----------------------LNPDVITLDVEM 59 (354)
T ss_pred ccEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhh-----------------------hCCCEEEEeCCC
Confidence 368999999999999999999876 88877 89999999998753 469999999999
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEecCCC--HHHHHHHHHcCCCEEEECCCCH---------HHHHHHHHHHhh
Q 001044 1099 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAM--NADEKKCLGVGMNAYLTKPIDS---------ERMVSTILRLTK 1166 (1177)
Q Consensus 1099 P~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~--~~~~~~~l~aG~d~yL~KP~~~---------~~L~~~I~~l~~ 1166 (1177)
|.|||++++++||+.. . +|||++|+... .....+++++|+++||.||++. ++|..+++.+.+
T Consensus 60 p~~dgle~l~~i~~~~-----~-~piIvls~~~~~~~~~~~~al~~Ga~d~l~kP~~~~~~~~~~~~~~l~~~i~~~~~ 132 (354)
T PRK00742 60 PVMDGLDALEKIMRLR-----P-TPVVMVSSLTERGAEITLRALELGAVDFVTKPFLGISLGMDEYKEELAEKVRAAAR 132 (354)
T ss_pred CCCChHHHHHHHHHhC-----C-CCEEEEecCCCCCHHHHHHHHhCCCcEEEeCCcccccchHHHHHHHHHHHHHHHhh
Confidence 9999999999999742 2 89999998643 3556789999999999999953 566677666544
No 105
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.27 E-value=4.6e-11 Score=125.74 Aligned_cols=120 Identities=20% Similarity=0.372 Sum_probs=108.1
Q ss_pred CcEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1100 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~ 1100 (1177)
..+||++||++..+..+...|+..|+.+..+.++.++++.+. ...||+|++|+.||.
T Consensus 3 ~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-----------------------~~~~d~ii~d~~~~~ 59 (202)
T PRK09390 3 KGVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALP-----------------------GLRFGCVVTDVRMPG 59 (202)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhc-----------------------cCCCCEEEEeCCCCC
Confidence 358999999999999999999999999999999999988774 246999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1101 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1101 mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
++|+++++.||+.. ..+|||++|+.........++++|+++|+.||++.+++..++..+++..
T Consensus 60 ~~~~~~~~~l~~~~-----~~~~ii~l~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~~~~~~ 122 (202)
T PRK09390 60 IDGIELLRRLKARG-----SPLPVIVMTGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIERALAQA 122 (202)
T ss_pred CcHHHHHHHHHhcC-----CCCCEEEEECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHHHHHhh
Confidence 99999999999642 4689999999999999999999999999999999999999998877653
No 106
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.27 E-value=4.4e-11 Score=135.90 Aligned_cols=116 Identities=24% Similarity=0.483 Sum_probs=96.7
Q ss_pred cEEEEEecChHHHHHHHHHHhhcC--CEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVG--ATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1099 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G--~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP 1099 (1177)
.|||+|||.+..|.+++.+|...| ..|-.+.||.+|++++.+ ..||+|.||++||
T Consensus 2 irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~-----------------------~~PDVi~ld~emp 58 (350)
T COG2201 2 IRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKK-----------------------LKPDVITLDVEMP 58 (350)
T ss_pred cEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHh-----------------------cCCCEEEEecccc
Confidence 589999999999999999999988 556789999999999975 3799999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEecCCC--HHHHHHHHHcCCCEEEECCCC---------HHHHHHHHHHHhh
Q 001044 1100 KMDGYEATIEIRKSESEHGARNIPIVALTAHAM--NADEKKCLGVGMNAYLTKPID---------SERMVSTILRLTK 1166 (1177)
Q Consensus 1100 ~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~--~~~~~~~l~aG~d~yL~KP~~---------~~~L~~~I~~l~~ 1166 (1177)
.|||+|++++|-+. ..+|||++++-.. .+...+|++.||-||+.||.. .++|.+.|+..-+
T Consensus 59 ~mdgl~~l~~im~~------~p~pVimvsslt~~g~~~t~~al~~gAvD~i~kp~~~i~~~~~~~~~~l~~kv~~~~~ 130 (350)
T COG2201 59 VMDGLEALRKIMRL------RPLPVIMVSSLTEEGAEATLEALELGAVDFIAKPSGGISLGLDEVAELLIEKVRAAAR 130 (350)
T ss_pred cccHHHHHHHHhcC------CCCcEEEEeccccccHHHHHHHHhcCcceeecCCCcccccchHHHHHHHHHHHHHHhh
Confidence 99999999999764 3589999987544 345568999999999999984 2344455555543
No 107
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the dimerisation and phosphoacceptor domain found in histidine kinases. It has been found in bacterial sensor protein/histidine kinases. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms []. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and the phosphotransfer from aspartyl phosphate back to ADP or to water []. The homodimeric domain includes the site of histidine autophosphorylation and phosphate transfer reactions. The structure of the homodimeric domain comprises a closed, four-helical bundle with a left-handed twist, formed by two identical alpha-hairpin subunits.; GO: 0000155 two-component sensor activity, 0007165 signal transduction, 0016020 membrane; PDB: 3DGE_A 2C2A_A 3A0R_A 4EW8_A 2LFS_B 2LFR_B 3JZ3_A 1JOY_B 3ZRW_C 3ZRV_A ....
Probab=99.27 E-value=2.3e-11 Score=107.40 Aligned_cols=67 Identities=45% Similarity=0.704 Sum_probs=60.6
Q ss_pred HHHHHHHHhHHhhhhHHHHHHHHHHHhhcCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 001044 494 YKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQ-YSTVCQIKKSSYALLRLLNRILDLSKVESG 560 (1177)
Q Consensus 494 ~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~-~~~l~~I~~ss~~L~~LIndLLdlSkiEsg 560 (1177)
.|.+|++++||||||||++|.+++++|......++++ ++++..|..++.+|..+++++++++|+|+|
T Consensus 1 s~~~~~~~isHelr~PL~~i~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~~~G 68 (68)
T PF00512_consen 1 SKGEFLASISHELRNPLTAIRGYLELLERDSDLDPEQLREYLDRIRSAADRLNELINDLLDFSRIESG 68 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCC-HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHhHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 3679999999999999999999999998745567777 899999999999999999999999999987
No 108
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.25 E-value=9.5e-11 Score=140.69 Aligned_cols=118 Identities=31% Similarity=0.463 Sum_probs=107.5
Q ss_pred EEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCC
Q 001044 1023 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMD 1102 (1177)
Q Consensus 1023 ~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~md 1102 (1177)
+||++||++..+..+...|+..|+.+..+.++.++++.+.. ..||+|++|+.||.++
T Consensus 4 ~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-----------------------~~~dlvi~d~~~~~~~ 60 (457)
T PRK09581 4 RILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICER-----------------------EQPDIILLDVMMPGMD 60 (457)
T ss_pred eEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHhh-----------------------cCCCEEEEeCCCCCCC
Confidence 79999999999999999999899999999999999998853 4699999999999999
Q ss_pred HHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001044 1103 GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1166 (1177)
Q Consensus 1103 G~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~ 1166 (1177)
|+++++.||+... .+.+|||++|+....+...+++.+|+++|+.||++.++|..++.++.+
T Consensus 61 g~~l~~~i~~~~~---~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 121 (457)
T PRK09581 61 GFEVCRRLKSDPA---TTHIPVVMVTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLTR 121 (457)
T ss_pred HHHHHHHHHcCcc---cCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Confidence 9999999997432 246899999999999999999999999999999999999999987754
No 109
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.22 E-value=8.9e-11 Score=126.94 Aligned_cols=108 Identities=11% Similarity=0.128 Sum_probs=90.5
Q ss_pred HHHHHHHHhh---cCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE---EeCCCCCCCHHHHH
Q 001044 1034 QIVACKILEK---VGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL---MDCQMPKMDGYEAT 1107 (1177)
Q Consensus 1034 ~~~l~~~L~~---~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIl---mDi~MP~mdG~e~~ 1107 (1177)
|..+..+|+. .|+.|..+.++.++++.+.. .+||+++ +|+.||+|||++++
T Consensus 3 r~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~~~-----------------------~~pd~vl~dl~d~~mp~~~Gl~~~ 59 (207)
T PRK11475 3 SIGIESLFRKFPGNPYKLHTFSSQSSFQDAMSR-----------------------ISFSAVIFSLSAMRSERREGLSCL 59 (207)
T ss_pred hHHHHHHHhcCCCCeeEEEEeCCHHHHHHHhcc-----------------------CCCCEEEeeccccCCCCCCHHHHH
Confidence 5677888864 46677899999999998752 4689998 78899999999999
Q ss_pred HHHHhcccccCCCCcceEEEecCCCHHHHHHHH-HcCCCEEEECCCCHHHHHHHHHHHhhcCC
Q 001044 1108 IEIRKSESEHGARNIPIVALTAHAMNADEKKCL-GVGMNAYLTKPIDSERMVSTILRLTKNMP 1169 (1177)
Q Consensus 1108 r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l-~aG~d~yL~KP~~~~~L~~~I~~l~~~~~ 1169 (1177)
++||+.. +.+|||++|++.......+++ ++|+++||.||.+.++|..+|+.+..+..
T Consensus 60 ~~l~~~~-----p~~~iIvlt~~~~~~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~G~~ 117 (207)
T PRK11475 60 TELAIKF-----PRMRRLVIADDDIEARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNGVR 117 (207)
T ss_pred HHHHHHC-----CCCCEEEEeCCCCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHCCCc
Confidence 9999753 468999999988776566655 79999999999999999999999887653
No 110
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.22 E-value=4e-10 Score=108.18 Aligned_cols=122 Identities=23% Similarity=0.461 Sum_probs=106.9
Q ss_pred CcEEEEEecChHHHHHHHHHHhhcCCE-EEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEKVGAT-VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1099 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~~G~~-v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP 1099 (1177)
.++||++|+++.....+...|+..|+. +..+.++.++++.+.. ..||++++|..+|
T Consensus 5 ~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~di~l~d~~~~ 61 (129)
T PRK10610 5 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-----------------------GGFGFVISDWNMP 61 (129)
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhhc-----------------------cCCCEEEEcCCCC
Confidence 368999999999999999999998984 7788999999987742 4699999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1100 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1100 ~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
.++|+++.+.+++... ...+|+++++.........+++++|+++|+.||++.+++...+.+++++.
T Consensus 62 ~~~~~~~~~~l~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~~~~~ 127 (129)
T PRK10610 62 NMDGLELLKTIRADGA---MSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEKL 127 (129)
T ss_pred CCCHHHHHHHHHhCCC---cCCCcEEEEECCCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHHHHHc
Confidence 9999999999997532 13589999999888888889999999999999999999999999887654
No 111
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=99.21 E-value=8.2e-11 Score=143.54 Aligned_cols=128 Identities=15% Similarity=0.199 Sum_probs=88.4
Q ss_pred hcCCcEEEEEcCCCCCc-eEEeCHHHHHHHHHHHHhhHhhccCCCe----EEEEeeccccCCCCCCCcCCcccccccchh
Q 001044 587 SNHNVETVLDLSDNIPR-NVRGDPGRVFQIFSNLINNSIKFTSSGH----IIIRGWCENLDTSKNTAEFPTDRKKFGRAF 661 (1177)
Q Consensus 587 ~~k~I~l~~~i~~~~p~-~V~gD~~rL~QIL~NLL~NAIKfT~~G~----v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (1177)
.++.+.+..-+..+.+. .+..|...|.+++.|||+||++|+..++ |.|.+..
T Consensus 21 ~~~~iS~aEfF~kN~~~lgfD~d~r~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~----------------------- 77 (795)
T PRK14868 21 SQREISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAGILPDIYVEIEE----------------------- 77 (795)
T ss_pred hccccceeeecccCcceeeccCCHHHHHHHHHHHHHHHHHhCcccCCCceEEEEEEE-----------------------
Confidence 34666666555544321 2234577899999999999999998654 4443311
Q ss_pred hhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCC----CCCCCCccchhHHHHHHHHHHcCCE
Q 001044 662 RTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPS----TTRKHGGTGLGLSIVRTLVNKMGGE 737 (1177)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s----~~~~~~GtGLGLaIvk~IVe~~GG~ 737 (1177)
....+.|.|.|+|+||++++++++|++|++++.. .++...|.||||++|...+. +||.
T Consensus 78 -----------------~g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~~~~~srG~rG~GLglai~~sqlt-~Ggp 139 (795)
T PRK14868 78 -----------------VGDYYRLVVEDNGPGITKEQIPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLT-SGKP 139 (795)
T ss_pred -----------------CCCEEEEEEEEcCCCCCHHHHHHHhhhhcccccccccccCCCCCceehHHHHHHHHHc-CCCc
Confidence 1224679999999999999999999999876431 23344677777777777763 7999
Q ss_pred EEEEEeCCC-ceE--EEEEEe
Q 001044 738 IKVVKKNSP-GTL--MQLYLL 755 (1177)
Q Consensus 738 I~v~S~~g~-GT~--f~~~Lp 755 (1177)
|.|.|..+. +.. |.+.+.
T Consensus 140 I~I~S~~~~~~~g~~~~L~Id 160 (795)
T PRK14868 140 AKITSRTQGSEEAQYFELIID 160 (795)
T ss_pred EEEEeCCCCCCceeEEEEEEe
Confidence 999998754 333 444443
No 112
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=99.21 E-value=5.6e-11 Score=141.36 Aligned_cols=106 Identities=22% Similarity=0.303 Sum_probs=84.3
Q ss_pred EEeCHHHHHHHHHHHHhhHhhccCC-C---eEEEEeeccccCCCCCCCcCCcccccccchhhhhhhhhhcccccccCCCc
Q 001044 605 VRGDPGRVFQIFSNLINNSIKFTSS-G---HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNK 680 (1177)
Q Consensus 605 V~gD~~rL~QIL~NLL~NAIKfT~~-G---~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (1177)
+.+|...|.+++.||++||++|+.. | .|.|.+.. .+.
T Consensus 22 f~~~~~~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~---------------------------------------~g~ 62 (488)
T TIGR01052 22 YSGKIRSLTTVIHELVTNSLDACEEAGILPDIKVEIEK---------------------------------------IGK 62 (488)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEE---------------------------------------CCC
Confidence 5678999999999999999999875 3 34443210 011
Q ss_pred eEEEEEEEeCCCCCChhhHhhhhcccccCCCCC--CCCCCccchhHHHHHHHHHHcCCE-EEEEEeCCCceEE
Q 001044 681 LALCFEVDDTGCGIDQSKWETVFESFEQGDPST--TRKHGGTGLGLSIVRTLVNKMGGE-IKVVKKNSPGTLM 750 (1177)
Q Consensus 681 ~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~--~~~~~GtGLGLaIvk~IVe~~GG~-I~v~S~~g~GT~f 750 (1177)
..+.|+|.|+|+||++++++++|++|++++... ....||.|+||++|+.+++.|+|+ ++|.|..+ |..|
T Consensus 63 ~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~~~~~~s~G~~GlGLs~~~~isq~~~G~~i~V~S~~~-g~~~ 134 (488)
T TIGR01052 63 DHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKFHRIIQSRGQQGIGISGAVLYSQMTTGKPVKVISSTG-GEIY 134 (488)
T ss_pred ceEEEEEEECCCCCCHHHHHhhhhhccccCccccccccCCCccEehhHHHHHHHHcCCceEEEEEecC-CceE
Confidence 235689999999999999999999998876532 223478999999999999999999 99999876 6655
No 113
>PRK13435 response regulator; Provisional
Probab=99.20 E-value=3.6e-10 Score=114.43 Aligned_cols=116 Identities=21% Similarity=0.289 Sum_probs=99.9
Q ss_pred CcEEEEEecChHHHHHHHHHHhhcCCEEE-EEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEKVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1099 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~~G~~v~-~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP 1099 (1177)
.++|||+||++.....+...|+..|+.+. .+.++.++++.+.. ..||+|++|+.|+
T Consensus 5 ~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~dliivd~~~~ 61 (145)
T PRK13435 5 QLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRR-----------------------RQPDVALVDVHLA 61 (145)
T ss_pred cceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhh-----------------------cCCCEEEEeeecC
Confidence 46899999999999999999998899987 78999999987743 3699999999998
Q ss_pred -CCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1100 -KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1100 -~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
.++|.++.+.+++. ..+|||++++... ...++.+|+++|+.||++.++|.+.|.++..+.
T Consensus 62 ~~~~~~~~~~~l~~~------~~~pii~ls~~~~---~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 122 (145)
T PRK13435 62 DGPTGVEVARRLSAD------GGVEVVFMTGNPE---RVPHDFAGALGVIAKPYSPRGVARALSYLSARR 122 (145)
T ss_pred CCCcHHHHHHHHHhC------CCCCEEEEeCCHH---HHHHHhcCcceeEeCCCCHHHHHHHHHHHHhcC
Confidence 59999999999753 2589999997643 356788999999999999999999999887644
No 114
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=99.18 E-value=5.2e-10 Score=118.40 Aligned_cols=120 Identities=21% Similarity=0.325 Sum_probs=104.9
Q ss_pred CcEEEEEecChHHHHHHHHHHhhc-CCEE-EEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEKV-GATV-SVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1098 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~~-G~~v-~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~M 1098 (1177)
..+||++||++..+..+...|... ++.+ ..+.++.++++.+.. ..||+|++|+.|
T Consensus 3 ~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~dlvl~d~~~ 59 (211)
T PRK15369 3 NYKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACRQ-----------------------LEPDIVILDLGL 59 (211)
T ss_pred ccEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHHh-----------------------cCCCEEEEeCCC
Confidence 368999999999999999999875 4664 478999999987753 469999999999
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1099 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1099 P~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
|.++|+++++.+|+.. +.+|+|++|+.........++++|+++|+.||++.++|...+..+..+.
T Consensus 60 ~~~~~~~~~~~l~~~~-----~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 124 (211)
T PRK15369 60 PGMNGLDVIPQLHQRW-----PAMNILVLTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTVAVGK 124 (211)
T ss_pred CCCCHHHHHHHHHHHC-----CCCcEEEEeCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 9999999999999742 3589999999999999999999999999999999999999998877553
No 115
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.18 E-value=1.4e-10 Score=147.17 Aligned_cols=117 Identities=18% Similarity=0.260 Sum_probs=103.3
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1101 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~m 1101 (1177)
.+||||||++.++..+..+|...|+.|..+.++.+|++.+.. ..||+||+|+.||+|
T Consensus 8 ~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~~-----------------------~~~Dlvl~d~~lp~~ 64 (665)
T PRK13558 8 RGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVEA-----------------------GEIDCVVADHEPDGF 64 (665)
T ss_pred eeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhhc-----------------------cCCCEEEEeccCCCC
Confidence 589999999999999999999999999999999999998753 469999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHH--HHHHHHHHHhh
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSE--RMVSTILRLTK 1166 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~--~L~~~I~~l~~ 1166 (1177)
+|++++++||... +.+|||++|++...+...+++.+|+++|+.||.+.. .+..+++..+.
T Consensus 65 ~g~~~l~~l~~~~-----~~~piI~lt~~~~~~~~~~al~~Ga~dyl~k~~~~~~~~l~~~i~~~~~ 126 (665)
T PRK13558 65 DGLALLEAVRQTT-----AVPPVVVVPTAGDEAVARRAVDADAAAYVPAVSDDATAAIAERIESAVP 126 (665)
T ss_pred cHHHHHHHHHhcC-----CCCCEEEEECCCCHHHHHHHHhcCcceEEeccchhHHHHHHHHHHHhhh
Confidence 9999999998642 458999999999999999999999999999997643 66666665554
No 116
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.18 E-value=4.8e-10 Score=119.82 Aligned_cols=119 Identities=25% Similarity=0.398 Sum_probs=104.9
Q ss_pred cEEEEEecChHHHHHHHHHHhhc-CCEE-EEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKV-GATV-SVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1099 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~-G~~v-~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP 1099 (1177)
.+||||||++..+..+...|... ++.+ ..+.++.+++..+.. ..||+|++|+.||
T Consensus 7 ~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~dlvl~d~~l~ 63 (216)
T PRK10651 7 ATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAES-----------------------LDPDLILLDLNMP 63 (216)
T ss_pred eEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHHh-----------------------CCCCEEEEeCCCC
Confidence 58999999999999999999864 5654 468999999998753 4699999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1100 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1100 ~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
.++|+++++.+|+.. ..+|+|++++.........++++|+++|+.||++.++|...|..+.++.
T Consensus 64 ~~~~~~~~~~l~~~~-----~~~~vi~l~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~~~~~ 127 (216)
T PRK10651 64 GMNGLETLDKLREKS-----LSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAGE 127 (216)
T ss_pred CCcHHHHHHHHHHhC-----CCCcEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 999999999999753 3579999999999989999999999999999999999999999987653
No 117
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.18 E-value=4.6e-10 Score=119.67 Aligned_cols=118 Identities=28% Similarity=0.416 Sum_probs=103.7
Q ss_pred cEEEEEecChHHHHHHHHHHhh-cCCEEE-EEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEK-VGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1099 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~-~G~~v~-~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP 1099 (1177)
.+||++||++..+..+...|+. .++.+. .+.++.++++.+.. ..||+|++|+.||
T Consensus 7 ~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~dlvi~d~~~~ 63 (215)
T PRK10403 7 FQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANR-----------------------LDPDVILLDLNMK 63 (215)
T ss_pred EEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHh-----------------------cCCCEEEEecCCC
Confidence 5899999999999999999975 577775 68999999987753 4699999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001044 1100 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1167 (1177)
Q Consensus 1100 ~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~ 1167 (1177)
.++|+++++.+++.. .++|++++|.+........++++|+++|+.||++.++|..++..+..+
T Consensus 64 ~~~~~~~~~~l~~~~-----~~~~ii~l~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~ 126 (215)
T PRK10403 64 GMSGLDTLNALRRDG-----VTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKG 126 (215)
T ss_pred CCcHHHHHHHHHHhC-----CCCeEEEEeCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHhCC
Confidence 999999999999753 357999999998888888999999999999999999999999876544
No 118
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=99.16 E-value=2.4e-10 Score=106.35 Aligned_cols=101 Identities=43% Similarity=0.632 Sum_probs=79.9
Q ss_pred HHHHHHHHHhhHhhccC--CCeEEEEeeccccCCCCCCCcCCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEe
Q 001044 612 VFQIFSNLINNSIKFTS--SGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDD 689 (1177)
Q Consensus 612 L~QIL~NLL~NAIKfT~--~G~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D 689 (1177)
|.+++.+|++||++|.. .+.+.+..... ...+.|.|.|
T Consensus 1 l~~~~~~ll~Na~~~~~~~~~~v~i~~~~~----------------------------------------~~~~~v~i~d 40 (103)
T cd00075 1 LQQVLLNLLSNAIKHTPEGGGRITISVERD----------------------------------------GDHLEIRVED 40 (103)
T ss_pred CHHHHHHHHHHHHHhCcCCCCeEEEEEEec----------------------------------------CCEEEEEEEe
Confidence 46899999999999997 45666554211 1247799999
Q ss_pred CCCCCChhhHhhhhcccccCCCCCCCCCCccchhHHHHHHHHHHcCCEEEEEEeCCCceEEEEEE
Q 001044 690 TGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYL 754 (1177)
Q Consensus 690 tG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~IVe~~GG~I~v~S~~g~GT~f~~~L 754 (1177)
+|.|+++..+++.|.+|... ......++.|+||++|+++++.|||++++.+..+.|++|++.+
T Consensus 41 ~g~g~~~~~~~~~~~~~~~~--~~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~ 103 (103)
T cd00075 41 NGPGIPEEDLERIFERFSDG--SRSRKGGGTGLGLSIVKKLVELHGGRIEVESEPGGGTTFTITL 103 (103)
T ss_pred CCCCCCHHHHHHHhhhhhcC--CCCCCCCccccCHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEC
Confidence 99999999999999987211 1222345899999999999999999999999888899988753
No 119
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=99.16 E-value=1.4e-10 Score=141.54 Aligned_cols=114 Identities=19% Similarity=0.273 Sum_probs=88.3
Q ss_pred EeCHHHH---HHHHHHHHhhHhhccCCC----eEEEEeeccccCCCCCCCcCCcccccccchhhhhhhhhhcccccccCC
Q 001044 606 RGDPGRV---FQIFSNLINNSIKFTSSG----HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFRED 678 (1177)
Q Consensus 606 ~gD~~rL---~QIL~NLL~NAIKfT~~G----~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (1177)
.|++..+ .+++.||++||++|+..+ .|.|.+.. .
T Consensus 28 lGf~~~~r~L~~VVkELVeNAIDA~~~~g~~p~I~V~I~~---------------------------------------~ 68 (659)
T PRK14867 28 LGYSGKLRSMTTIIHELVTNSLDACEEAEILPDIKVEIEK---------------------------------------L 68 (659)
T ss_pred eechhHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEE---------------------------------------C
Confidence 4454454 599999999999998753 45544311 1
Q ss_pred CceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCC--CCCCccchhHHHHHHHHHHc-CCEEEEEEeCCCceEEEEEEe
Q 001044 679 NKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTT--RKHGGTGLGLSIVRTLVNKM-GGEIKVVKKNSPGTLMQLYLL 755 (1177)
Q Consensus 679 ~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~--~~~~GtGLGLaIvk~IVe~~-GG~I~v~S~~g~GT~f~~~Lp 755 (1177)
+...+.|+|.|+|+||+++.++++|++|+.++.-.. ...|+.|+||+++..+.+.+ ||.+.+.|..+.|++|++.+|
T Consensus 69 g~~~~~I~V~DNG~GIp~e~l~~iFerF~atSK~~~~~qS~G~rG~GLa~a~~vsql~~G~pI~I~S~~g~G~~f~i~L~ 148 (659)
T PRK14867 69 GSDHYKVAVEDNGPGIPPEFVPKVFGKMLAGSKMHRLIQSRGQQGIGAAGVLLFSQITTGKPLKITTSTGDGKIHEMEIK 148 (659)
T ss_pred CCcEEEEEEEeeCeeCCHHHHhhhhccccccCcccceeccCCCCcccHHHHHHHHHHhcCCcEEEEEEcCCCEEEEEEEE
Confidence 122477999999999999999999999987654211 34568999999999999886 566999999999999999998
Q ss_pred cCC
Q 001044 756 LGA 758 (1177)
Q Consensus 756 l~~ 758 (1177)
+..
T Consensus 149 i~i 151 (659)
T PRK14867 149 MSV 151 (659)
T ss_pred EEe
Confidence 854
No 120
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=99.15 E-value=3.9e-10 Score=122.14 Aligned_cols=118 Identities=13% Similarity=0.086 Sum_probs=97.4
Q ss_pred EEEEEecChHHHHHHHHHHhhcCC---EEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCC--
Q 001044 1023 RILLAEDTPLIQIVACKILEKVGA---TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ-- 1097 (1177)
Q Consensus 1023 ~ILIVdD~~~~~~~l~~~L~~~G~---~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~-- 1097 (1177)
.||||||++..+..++.+|+..++ .|..+.++.++++.+.. .+||+||||+.
T Consensus 2 ~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~~-----------------------~~pDlvLlDl~~~ 58 (207)
T PRK15411 2 STIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDS-----------------------LRPSVVFINEDCF 58 (207)
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHhc-----------------------cCCCEEEEeCccc
Confidence 589999999999999999987653 34578999999997753 36899999966
Q ss_pred CCCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCE-EEECCCCHHHHHHHHHHHhhcCC
Q 001044 1098 MPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNA-YLTKPIDSERMVSTILRLTKNMP 1169 (1177)
Q Consensus 1098 MP~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~-yL~KP~~~~~L~~~I~~l~~~~~ 1169 (1177)
||.++|.+++++|++.. +.+|||++|++.+.... .++.+|++. |+.|+.+.++|..+|+.+..+..
T Consensus 59 l~~~~g~~~i~~i~~~~-----p~~~iivlt~~~~~~~~-~~~~~~~~~~~~~K~~~~~~L~~aI~~v~~g~~ 125 (207)
T PRK15411 59 IHDASNSQRIKQIINQH-----PNTLFIVFMAIANIHFD-EYLLVRKNLLISSKSIKPESLDDLLGDILKKET 125 (207)
T ss_pred CCCCChHHHHHHHHHHC-----CCCeEEEEECCCchhHH-HHHHHHhhceeeeccCCHHHHHHHHHHHHcCCc
Confidence 99999999999999753 35899999999776544 355666665 89999999999999999886653
No 121
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.12 E-value=4.3e-10 Score=116.58 Aligned_cols=115 Identities=32% Similarity=0.425 Sum_probs=96.4
Q ss_pred CcEEEEEecChHHHHHHHHHHhhcCCEEE-EEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEKVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1099 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~~G~~v~-~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP 1099 (1177)
.++||++||++.++..+...|...||.++ ++.+|.++.+.... .+||+||||+.||
T Consensus 5 ~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~~-----------------------~~pDvVildie~p 61 (194)
T COG3707 5 LLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCER-----------------------LQPDVVILDIEMP 61 (194)
T ss_pred ccceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHHHh-----------------------cCCCEEEEecCCC
Confidence 46999999999999999999999999754 78899999887754 5899999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Q 001044 1100 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL 1164 (1177)
Q Consensus 1100 ~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1164 (1177)
.-|-.|.... .+ .+ ...|||++|++.+++..+++.++|+.+||+||++...|...+.-.
T Consensus 62 ~rd~~e~~~~-~~--~~---~~~piv~lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA 120 (194)
T COG3707 62 RRDIIEALLL-AS--EN---VARPIVALTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILDVA 120 (194)
T ss_pred CccHHHHHHH-hh--cC---CCCCEEEEEccCChHHHHHHHHcCCeEEEecCcchhhhhHHHHHH
Confidence 9994443322 22 11 347999999999999999999999999999999999988777543
No 122
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.08 E-value=2.1e-09 Score=134.15 Aligned_cols=141 Identities=23% Similarity=0.411 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHHhc--CCcEEEEEcCCCCCceEEeCHHHHHHH---HHHHHhhHhhcc-------------CCCeEE
Q 001044 572 QKELEELVDMFSVQCSN--HNVETVLDLSDNIPRNVRGDPGRVFQI---FSNLINNSIKFT-------------SSGHII 633 (1177)
Q Consensus 572 ~~li~~vv~~~~~~a~~--k~I~l~~~i~~~~p~~V~gD~~rL~QI---L~NLL~NAIKfT-------------~~G~v~ 633 (1177)
..++...-.+.+..+.+ |.+++.+. .. ....|+.-|.++ |.+||.||+.|. +.|.|+
T Consensus 393 ~~vf~RfpR~VRdla~~lgK~V~L~ie--G~---~telDksIlE~l~dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~I~ 467 (716)
T COG0643 393 EQVFSRFPRMVRDLARKLGKQVELVIE--GE---DTELDKSILERLGDPLTHLVRNAVDHGIETPEERRAAGKPEEGTIT 467 (716)
T ss_pred HHHHhhccHHHHHHHHHhCCeeEEEEe--cC---CeeehHHHHHHhcccHHHHHhcchhccCCCHHHHHHcCCCCcceEE
Confidence 34444444444444444 55555544 33 256799888887 899999999994 235566
Q ss_pred EEeeccccCCCCCCCcCCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHh-------------
Q 001044 634 IRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWE------------- 700 (1177)
Q Consensus 634 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~------------- 700 (1177)
+++.. . ...+.|+|.|.|.||+.+.+.
T Consensus 468 L~A~~--------------------------------------~--gn~ivIev~DDG~Gid~ekI~~KAiErGli~~~~ 507 (716)
T COG0643 468 LSAYH--------------------------------------E--GNNIVIEVSDDGAGIDREKIREKAIERGLITEEE 507 (716)
T ss_pred EEEEc--------------------------------------C--CCeEEEEEeeCCCCCCHHHHHHHHHHcCCCChHH
Confidence 55421 1 224779999999999887643
Q ss_pred -----------hhhcccccCCCCCCCCCCccchhHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCC
Q 001044 701 -----------TVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA 758 (1177)
Q Consensus 701 -----------~IFe~F~q~d~s~~~~~~GtGLGLaIvk~IVe~~GG~I~v~S~~g~GT~f~~~Lpl~~ 758 (1177)
-||.|=|..... -..-+|-|.||=+||+-++.+||.|.|+|++|+||+|++.||+..
T Consensus 508 a~~lSd~Ei~~LIF~PGFSTa~~-VtdvSGRGVGMDVVk~~I~~LgG~I~V~S~~G~GT~Fti~LPLTL 575 (716)
T COG0643 508 AETLSDEEILNLIFAPGFSTAEQ-VTDVSGRGVGMDVVKTNIEQLGGSISVSSEPGKGTTFTIRLPLTL 575 (716)
T ss_pred hccCCHHHHHHHHhcCCCCcchh-hhcccCCccCHHHHHHHHHHcCCEEEEEecCCCCeEEEEecCcHH
Confidence 378886643322 224579999999999999999999999999999999999999864
No 123
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=99.07 E-value=8.9e-10 Score=111.13 Aligned_cols=97 Identities=19% Similarity=0.321 Sum_probs=75.1
Q ss_pred eCHHHHHHHHHHHHhhHhhccC----CCeEEEEeeccccCCCCCCCcCCcccccccchhhhhhhhhhcccccccCCCceE
Q 001044 607 GDPGRVFQIFSNLINNSIKFTS----SGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLA 682 (1177)
Q Consensus 607 gD~~rL~QIL~NLL~NAIKfT~----~G~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1177)
.|...+.+++.|+++||++|+. .|.|.+.+.. ....
T Consensus 35 ~~~~~l~~~l~eli~Nai~h~~~~~~~~~I~v~~~~----------------------------------------~~~~ 74 (137)
T TIGR01925 35 EELTDIKTAVSEAVTNAIIHGYEENCEGVVYISATI----------------------------------------EDHE 74 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEE----------------------------------------eCCE
Confidence 4567899999999999999862 3456554321 1124
Q ss_pred EEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHHHHHHHHHHcCCEEEEEEeCCCceEEEEE
Q 001044 683 LCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLY 753 (1177)
Q Consensus 683 l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~IVe~~GG~I~v~S~~g~GT~f~~~ 753 (1177)
+.|+|.|+|.||+ ..+++|++|+..+. ..+|+|+||++++++ .+++.+++.++.||+|+++
T Consensus 75 ~~i~I~D~G~gi~--~~~~~~~~~~~~~~----~~~~~GlGL~lv~~~----~~~l~~~~~~~~Gt~v~i~ 135 (137)
T TIGR01925 75 VYITVRDEGIGIE--NLEEAREPLYTSKP----ELERSGMGFTVMENF----MDDVSVDSEKEKGTKIIMK 135 (137)
T ss_pred EEEEEEEcCCCcC--chhHhhCCCcccCC----CCCCCcccHHHHHHh----CCcEEEEECCCCCeEEEEE
Confidence 7899999999998 37789999996543 235889999998874 5799999999999999875
No 124
>PRK09191 two-component response regulator; Provisional
Probab=99.07 E-value=2e-09 Score=119.97 Aligned_cols=117 Identities=24% Similarity=0.332 Sum_probs=99.7
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCCEEE-EEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1100 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~~v~-~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~ 1100 (1177)
.+|||+||++..+..+...|+..|+.+. .+.++.++++.+.. ..||+|++|+.||.
T Consensus 138 ~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~-----------------------~~~dlvi~d~~~~~ 194 (261)
T PRK09191 138 TRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAKK-----------------------TRPGLILADIQLAD 194 (261)
T ss_pred CeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHhc-----------------------cCCCEEEEecCCCC
Confidence 5799999999999999999999999987 78999999998753 46999999999995
Q ss_pred -CCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCC
Q 001044 1101 -MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1169 (1177)
Q Consensus 1101 -mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~~ 1169 (1177)
++|+++++.+++.. ++|||++|+...... .+...|+++|+.||++.++|...|.++.....
T Consensus 195 ~~~g~e~l~~l~~~~------~~pii~ls~~~~~~~--~~~~~~~~~~l~kP~~~~~l~~~i~~~~~~~~ 256 (261)
T PRK09191 195 GSSGIDAVNDILKTF------DVPVIFITAFPERLL--TGERPEPAFLITKPFQPDTVKAAISQALFFQE 256 (261)
T ss_pred CCCHHHHHHHHHHhC------CCCEEEEeCCCcHHH--HHHhcccCceEECCCCHHHHHHHHHHHHhccc
Confidence 89999999998642 589999999765443 34456789999999999999999998876543
No 125
>PRK10693 response regulator of RpoS; Provisional
Probab=99.03 E-value=1.2e-09 Score=125.14 Aligned_cols=89 Identities=29% Similarity=0.473 Sum_probs=78.9
Q ss_pred EEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEEEec
Q 001044 1050 VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTA 1129 (1177)
Q Consensus 1050 ~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~mdG~e~~r~IR~~~~~~~~~~ipIIalTa 1129 (1177)
.+.+|.+|++.+.. ..||+|++|+.||+|+|+|++++||+.. ..+|||++|+
T Consensus 2 ~a~~g~~al~~l~~-----------------------~~pDlVL~D~~mp~~~Gle~~~~ir~~~-----~~ipiI~lt~ 53 (303)
T PRK10693 2 LAANGVDALELLGG-----------------------FTPDLIICDLAMPRMNGIEFVEHLRNRG-----DQTPVLVISA 53 (303)
T ss_pred EeCCHHHHHHHHhc-----------------------CCCCEEEEeCCCCCCCHHHHHHHHHhcC-----CCCcEEEEEC
Confidence 47899999998853 4699999999999999999999999752 3589999999
Q ss_pred CCCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHHhh
Q 001044 1130 HAMNADEKKCLGVGMNAYLTKPI-DSERMVSTILRLTK 1166 (1177)
Q Consensus 1130 ~~~~~~~~~~l~aG~d~yL~KP~-~~~~L~~~I~~l~~ 1166 (1177)
....+...+++++|++||+.||+ +.++|..+|.+.++
T Consensus 54 ~~~~~~~~~al~~Ga~dyl~KP~~~~~~L~~~i~~~l~ 91 (303)
T PRK10693 54 TENMADIAKALRLGVQDVLLKPVKDLNRLREMVFACLY 91 (303)
T ss_pred CCCHHHHHHHHHCCCcEEEECCCCcHHHHHHHHHHHhh
Confidence 99999999999999999999999 58999998877664
No 126
>PRK03660 anti-sigma F factor; Provisional
Probab=98.98 E-value=4.2e-09 Score=107.35 Aligned_cols=102 Identities=21% Similarity=0.313 Sum_probs=78.3
Q ss_pred eCHHHHHHHHHHHHhhHhhccCC----CeEEEEeeccccCCCCCCCcCCcccccccchhhhhhhhhhcccccccCCCceE
Q 001044 607 GDPGRVFQIFSNLINNSIKFTSS----GHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLA 682 (1177)
Q Consensus 607 gD~~rL~QIL~NLL~NAIKfT~~----G~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1177)
.|...+.+++.|++.||++|... +.+.+.... . ...
T Consensus 35 ~~~~~l~~~l~eli~Nai~h~~~~~~~~~i~i~~~~--------------------------------------~--~~~ 74 (146)
T PRK03660 35 EELTEIKTAVSEAVTNAIIHGYENNPDGVVYIEVEI--------------------------------------E--EEE 74 (146)
T ss_pred HHHHhHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEE--------------------------------------C--CCE
Confidence 36678999999999999998632 445554321 1 124
Q ss_pred EEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCC
Q 001044 683 LCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA 758 (1177)
Q Consensus 683 l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~IVe~~GG~I~v~S~~g~GT~f~~~Lpl~~ 758 (1177)
+.|+|.|+|.||++ ..+.|++|++.... .++.|+||+|+++ +.+++++++.++.||+|++++++..
T Consensus 75 l~i~I~D~G~g~~~--~~~~~~~~~~~~~~----~~~~GlGL~i~~~----~~~~i~~~~~~~~Gt~~~i~~~~~~ 140 (146)
T PRK03660 75 LEITVRDEGKGIED--IEEAMQPLYTTKPE----LERSGMGFTVMES----FMDEVEVESEPGKGTTVRMKKYLKK 140 (146)
T ss_pred EEEEEEEccCCCCh--HHHhhCCCcccCCC----CCCccccHHHHHH----hCCeEEEEecCCCcEEEEEEEEecc
Confidence 77999999999986 66889999865431 2478999999875 4568999999999999999998864
No 127
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=98.97 E-value=4.4e-07 Score=106.91 Aligned_cols=115 Identities=23% Similarity=0.328 Sum_probs=86.0
Q ss_pred HHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccCCCeEEEEeeccccCCCCCCCcCCcccccccchhh
Q 001044 583 SVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 662 (1177)
Q Consensus 583 ~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (1177)
......-++.+........+..-..-+.-+.+++.--|+||+||+..-.+.|.....
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~l~rivQEaltN~~rHa~A~~v~V~l~~~----------------------- 307 (365)
T COG4585 251 ADFEERTGITVDLSLGSELERLPPEAEDALFRIVQEALTNAIRHAQATEVRVTLERT----------------------- 307 (365)
T ss_pred HHHHhhcCeEEEEecCcccccCChhHHHHHHHHHHHHHHHHHhccCCceEEEEEEEc-----------------------
Confidence 333344555555554321111112456779999999999999999988888765321
Q ss_pred hhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHHHHHHHHHHcCCEEEEEE
Q 001044 663 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVK 742 (1177)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~IVe~~GG~I~v~S 742 (1177)
...++++|.|+|+|.+++.. +.|.||.=-|+=|+..||++.+.|
T Consensus 308 -----------------~~~l~l~V~DnG~Gf~~~~~-------------------~~~~GL~~mreRv~~lgG~l~i~S 351 (365)
T COG4585 308 -----------------DDELRLEVIDNGVGFDPDKE-------------------GGGFGLLGMRERVEALGGTLTIDS 351 (365)
T ss_pred -----------------CCEEEEEEEECCcCCCcccc-------------------CCCcchhhHHHHHHHcCCEEEEEe
Confidence 12388999999999876431 158999999999999999999999
Q ss_pred eCCCceEEEEEEec
Q 001044 743 KNSPGTLMQLYLLL 756 (1177)
Q Consensus 743 ~~g~GT~f~~~Lpl 756 (1177)
.+|+||++++.+|+
T Consensus 352 ~~g~Gt~i~i~lPl 365 (365)
T COG4585 352 APGQGTTVTITLPL 365 (365)
T ss_pred cCCCceEEEEecCC
Confidence 99999999999985
No 128
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=98.93 E-value=1.3e-08 Score=93.25 Aligned_cols=112 Identities=41% Similarity=0.624 Sum_probs=99.0
Q ss_pred EEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHH
Q 001044 1025 LLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGY 1104 (1177)
Q Consensus 1025 LIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~mdG~ 1104 (1177)
|++|+++..+..+...|+..|+.+..+.++.++++.+.. ..||+|++|..++..+|+
T Consensus 1 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~ii~~~~~~~~~~~ 57 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAE-----------------------EKPDLILLDIMMPGMDGL 57 (113)
T ss_pred CeecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHHh-----------------------CCCCEEEEecCCCCCchH
Confidence 578999999999999999999999999999999987753 479999999999999999
Q ss_pred HHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Q 001044 1105 EATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL 1164 (1177)
Q Consensus 1105 e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1164 (1177)
+..+.+++.. ..+|+++++.........++++.|+++|+.||++.++|...+..+
T Consensus 58 ~~~~~l~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~~~ 112 (113)
T cd00156 58 ELLRRIRKRG-----PDIPIIFLTAHGDDEDAVEALKAGADDYLTKPFSPEELLARIRAL 112 (113)
T ss_pred HHHHHHHHhC-----CCCCEEEEEecccHHHHHHHHHcChhhHccCCCCHHHHHHHHHhh
Confidence 9999998751 358999999887777788999999999999999999999888654
No 129
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=98.89 E-value=8.5e-07 Score=98.90 Aligned_cols=194 Identities=18% Similarity=0.305 Sum_probs=136.7
Q ss_pred HHHHHHHHHHhHHhhhhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccH
Q 001044 492 NNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDL 571 (1177)
Q Consensus 492 ~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~l~~~~~dL 571 (1177)
+..+++...-+=.||-.-+++|...+.++++- ..++..++....|+.-+.++..-+..+|.--| +-...+..+
T Consensus 300 EsiRk~vARELHDeIGQnITAIr~Qa~ivkR~-~~~~q~kqaas~Ie~LslrI~~svrqLL~rLR------P~~LDdL~l 372 (497)
T COG3851 300 ESIRKDVARELHDEIGQNITAIRTQAGIVKRA-ADNAQVKQAASLIEQLSLRIYDSVRQLLGRLR------PRQLDDLTL 372 (497)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-cCCHhHHhHHHHHHHHHHHHHHHHHHHHHhcC------CcccccccH
Confidence 34455666667778888999999999988763 33445555666677767666666666654222 112346678
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccCCCeEEEEeeccccCCCCCCCcCC
Q 001044 572 QKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFP 651 (1177)
Q Consensus 572 ~~li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~~~~~~~ 651 (1177)
.+.+..+++.+. ..++||...++...+....=..-+.-+.+++.-+++|-+||.+...|.+..+..
T Consensus 373 ~qai~~l~~Em~--~~ergihcq~~~~~n~~~ldet~rvTLyRl~QE~LNNI~KHA~AS~V~i~l~~~------------ 438 (497)
T COG3851 373 EQAIRSLLREME--LEERGIHCQLDWRINETALDETQRVTLYRLCQELLNNICKHADASAVTIQLWQQ------------ 438 (497)
T ss_pred HHHHHHHHHHhh--hhhcCeEEEeccccCcccCCcceeEeHHHHHHHHHHHHHhccccceEEEEEeeC------------
Confidence 888888887654 567888877765433110001112247888999999999999988888876432
Q ss_pred cccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHHHHHHHH
Q 001044 652 TDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 731 (1177)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~IV 731 (1177)
...+.++|+|+|.|+|+.. +-+|.||.=-++=|
T Consensus 439 ----------------------------~e~l~Lei~DdG~Gl~~~~-------------------~v~G~Gl~GmrERV 471 (497)
T COG3851 439 ----------------------------DERLMLEIEDDGSGLPPGS-------------------GVQGFGLTGMRERV 471 (497)
T ss_pred ----------------------------CcEEEEEEecCCcCCCCCC-------------------CccCcCcchHHHHH
Confidence 2246789999999997632 24689999999999
Q ss_pred HHcCCEEEEEEeCCCceEEEEEEe
Q 001044 732 NKMGGEIKVVKKNSPGTLMQLYLL 755 (1177)
Q Consensus 732 e~~GG~I~v~S~~g~GT~f~~~Lp 755 (1177)
...||++.++| -.||.+.+++|
T Consensus 472 saLGG~ltlss--q~GTrviVnLP 493 (497)
T COG3851 472 SALGGTLTLSS--QHGTRVIVNLP 493 (497)
T ss_pred HHhCCceEEEe--ccCcEEEEecc
Confidence 99999999998 57999999987
No 130
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=98.83 E-value=9.1e-07 Score=107.37 Aligned_cols=187 Identities=24% Similarity=0.300 Sum_probs=113.8
Q ss_pred HHHHHHHHHhHHhhhhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHH
Q 001044 493 NYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQ 572 (1177)
Q Consensus 493 ~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~l~~~~~dL~ 572 (1177)
+.+..=.....|.|.+=|++|.++++.- + ++ ....+.. .|..+.. .++++.+ ...++.
T Consensus 257 el~~lqsqi~pHfL~NtL~~I~~~~~~~--~----~~---~~~~~v~---~l~~llR--~~l~~~~--------~~~~l~ 314 (456)
T COG2972 257 ELRALQSQINPHFLYNTLETIRMLAEED--D----PE---EAAKVVK---ALSKLLR--YSLSNLD--------NIVTLE 314 (456)
T ss_pred HHHHHHhhcchHHHHhHHHHHHHHHHhc--C----HH---HHHHHHH---HHHHHHH--HHhhCCC--------CeeeHH
Confidence 3343445567999999999999998852 1 11 1111111 1222222 1222221 234444
Q ss_pred HHHHHHHHHHHHHHhcCCc--EEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhcc-----CCCeEEEEeeccccCCCC
Q 001044 573 KELEELVDMFSVQCSNHNV--ETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFT-----SSGHIIIRGWCENLDTSK 645 (1177)
Q Consensus 573 ~li~~vv~~~~~~a~~k~I--~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT-----~~G~v~v~~~~~~~~~~~ 645 (1177)
+-+.-+...+..+-.+-+. ++..++++.... ..|| ..+|..|++||++|. +.|.|.+.+..
T Consensus 315 ~E~~~~~kyl~iq~~r~~~~le~~~~i~~~~~~--l~~p---~l~lqpLvENAi~hgi~~~~~~~~I~i~~~~------- 382 (456)
T COG2972 315 IELLLIEKYLEIQKLRIGDRLEVPLPIDEELEP--LIDP---KLVLQPLVENAIEHGIEPKRPGGSIAISAKK------- 382 (456)
T ss_pred HHHHHHHHHHHHHHhccCcceEEEeccCccccc--ccCc---hHHHhHHHHHHHHHhcccCCCCCEEEEEEEE-------
Confidence 4444343433333333332 333333332211 2454 456779999999997 23456554321
Q ss_pred CCCcCCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCc-cchhH
Q 001044 646 NTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGG-TGLGL 724 (1177)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~G-tGLGL 724 (1177)
....+.++|.|+|+||+++..+.+.+. .++ .|+||
T Consensus 383 ---------------------------------~~~~i~i~i~Dng~g~~~~~~~~~~~~-----------~~~r~giGL 418 (456)
T COG2972 383 ---------------------------------QDDVIQISISDNGPGIDEEKLEGLSTK-----------GENRSGIGL 418 (456)
T ss_pred ---------------------------------cCCEEEEEEeeCCCCCChhHHHHHHhh-----------ccCcccccH
Confidence 134588999999999999988776432 112 59999
Q ss_pred HHHHHHHHHcCCE--EEEEEeCCCceEEEEEEecC
Q 001044 725 SIVRTLVNKMGGE--IKVVKKNSPGTLMQLYLLLG 757 (1177)
Q Consensus 725 aIvk~IVe~~GG~--I~v~S~~g~GT~f~~~Lpl~ 757 (1177)
.=+++.++.+-|. +.++|++++||+.++.+|..
T Consensus 419 ~Nv~~rl~~~~g~~~~~i~s~~~~gt~v~~~~~~~ 453 (456)
T COG2972 419 SNVKERLKLYFGEPGLSIDSQPGKGTFVQIIIPKR 453 (456)
T ss_pred HHHHHHHHHeeCCcceeEeecCCCcEEEEEEeehh
Confidence 9999999999998 69999999999999999864
No 131
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=98.79 E-value=1.3e-06 Score=95.49 Aligned_cols=192 Identities=23% Similarity=0.329 Sum_probs=128.1
Q ss_pred HHHHHHHHhHHhhhhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhccCCccccceeccH
Q 001044 494 YKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLR--LLNRILDLSKVESGKMELENTEFDL 571 (1177)
Q Consensus 494 ~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~--LIndLLdlSkiEsg~l~l~~~~~dL 571 (1177)
.|..++.-+.|-+++=|+.|..++.+-..... ++ ..+. ..+...|+.. ++.++|--+ ....++.
T Consensus 18 ~~~~ll~Ei~HRVKNnLqiIsSll~lq~r~~~-~~-~~~~---~~~~~~Ri~sla~~He~L~~s---------~~~~~~~ 83 (221)
T COG3920 18 EKELLLREIHHRVKNNLQIISSLLRLQARKFE-DE-VLEA---LRESQNRIQSLALIHELLYKS---------GDDTWDF 83 (221)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHhhcC-CH-HHHH---HHHHHHHHHHHHHHHHHHhcC---------CcceEcH
Confidence 46678889999999999999999987543322 21 1122 2233333322 333333322 2346788
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHH-HHHHHHHHHHhhHhhccC----CCeEEEEeeccccCCCCC
Q 001044 572 QKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPG-RVFQIFSNLINNSIKFTS----SGHIIIRGWCENLDTSKN 646 (1177)
Q Consensus 572 ~~li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~-rL~QIL~NLL~NAIKfT~----~G~v~v~~~~~~~~~~~~ 646 (1177)
..+++.+...+.+....+++.+..+..+++ .+..|.. -|--|+.-|+.||+||.- .|.|.|.....
T Consensus 84 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~--~l~~d~A~~Lgliv~EL~tNa~Khaf~~~~~G~I~I~~~~~------- 154 (221)
T COG3920 84 ASYLELLASNLFPSYGGKDIRLILDSGPNV--FLDPDTAVPLGLIVHELVTNALKHAFLSRPGGEIRITLSRE------- 154 (221)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEecCCce--EECchhhHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEEEc-------
Confidence 888888887776655566677776655432 3333433 378899999999999962 56666653211
Q ss_pred CCcCCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHHH
Q 001044 647 TAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSI 726 (1177)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaI 726 (1177)
.++. ...+.|.|+|.|+|.+.- . ...|+|+.+
T Consensus 155 ------------------------------~~~~-~~~l~v~deg~G~~~~~~----------------~-~~~g~G~~L 186 (221)
T COG3920 155 ------------------------------GDGG-RFLLTVWDEGGGPPVEAP----------------L-SRGGFGLQL 186 (221)
T ss_pred ------------------------------CCCC-eEEEEEEECCCCCCCCCC----------------C-CCCCcHHHH
Confidence 0111 355789999999986430 0 245999999
Q ss_pred HHHHH-HHcCCEEEEEEeCCCceEEEEEEecCC
Q 001044 727 VRTLV-NKMGGEIKVVKKNSPGTLMQLYLLLGA 758 (1177)
Q Consensus 727 vk~IV-e~~GG~I~v~S~~g~GT~f~~~Lpl~~ 758 (1177)
++.+| ++.||.+...+.. ||.|++.+|...
T Consensus 187 v~~lv~~q~~g~~~~~~~~--Gt~~~i~~~~~~ 217 (221)
T COG3920 187 VERLVPEQLGGELEDERPD--GTEFRLRFPLSE 217 (221)
T ss_pred HHHHHHHHcCCeEEEEcCC--CEEEEEEEeccc
Confidence 99999 8999999987654 999999999753
No 132
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=98.78 E-value=9.1e-08 Score=122.36 Aligned_cols=389 Identities=19% Similarity=0.229 Sum_probs=266.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcc
Q 001044 484 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKME 563 (1177)
Q Consensus 484 a~~~ae~~~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~ 563 (1177)
+++++......+..+...++|..|+|.+.+++....+.....+...+.-.+....+....+..+++.-.+.++...|.-.
T Consensus 375 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~gt~~ 454 (786)
T KOG0519|consen 375 AKEEAHMAGKARIDFLQKMSHAMRAPRHNIISLLSLLLQDIVLSPDSGLEIQTVMRSSNVFTSLIQADPDITRLYGGTGL 454 (786)
T ss_pred hhhhhhhccchhhhHHHHhccccccccccccccchhhHhheEeccCCceeEehhhhhhhHHHHHhccccccccccCCCcc
Confidence 34445555566667888888999999999999988665555555555555666778888899999999999998888777
Q ss_pred ccceeccHHHHHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhh--ccCCCeE-EEEeeccc
Q 001044 564 LENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIK--FTSSGHI-IIRGWCEN 640 (1177)
Q Consensus 564 l~~~~~dL~~li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIK--fT~~G~v-~v~~~~~~ 640 (1177)
.+...+.+..++.+.+.........+...+...+..+.+..+.+|..++.|++.+..+++.+ ++..|.- +.......
T Consensus 455 ~~~i~~~l~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 534 (786)
T KOG0519|consen 455 GESIVFSLVELMSGEISDISCISLGKTFSFTLDLLTNLPKSVVGDEKRLFQIILDFNGMLALLIDTKLGREQIFQVLAEL 534 (786)
T ss_pred cchhhccHHHHHHHHhhhhhhhccCceeeEEEEeccCCCccchhhhhhhhhhhhhhcchhhhhhccccCcceeEEEEecc
Confidence 77788999999999999988888888888888888888888999999999999999999999 8877742 33332221
Q ss_pred cCCCCCCCcCCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCcc
Q 001044 641 LDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGT 720 (1177)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~Gt 720 (1177)
.....+... ..+.. .+.. ........+.+.+.+++.|+...+....+..|-+....+.+...+.
T Consensus 535 ~~~~vd~~~--~~~~~---~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 598 (786)
T KOG0519|consen 535 LGISVDVSL--SLSLA---FWFL-----------DLSLSDLEVCKQIEDNEEGSNNGDISSSNPLHKSLRDLTSKLSSGS 598 (786)
T ss_pred cCccccccc--cchhh---hhhc-----------ccccccchheEEeeeccccccCCCcchhhhhhhccccchhhccccc
Confidence 111111000 00000 0000 0011123577899999999999999988888877665555445788
Q ss_pred chhHHHHHHHHHHcCCEEEEEEeCCCce------EEEEEEecCC-------CCcccc----ccCCCCCCcEEEEeecChh
Q 001044 721 GLGLSIVRTLVNKMGGEIKVVKKNSPGT------LMQLYLLLGA-------SSESKQ----IYDADFPNTVVVLATVGSM 783 (1177)
Q Consensus 721 GLGLaIvk~IVe~~GG~I~v~S~~g~GT------~f~~~Lpl~~-------~~~~~~----~~~~~~~~~~v~~~~~~~~ 783 (1177)
+++++.|++..+.++|.+++.-.. .|- ++....-... ....+. .......+..+++++.+..
T Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~g~~iLlvddn~v 677 (786)
T KOG0519|consen 599 GLSLALCPENSQLMEGNIGLVPSS-DGLPKSPSLCLEACLRVELNSMGSKLSGNPEKLAEPRDSKLLTGPKILLVDDNPV 677 (786)
T ss_pred ccccccchhhHHhhhccccccccc-ccCCccHHHHHHhhccccccccccccCCCcccccCccccccccCCceEEEecccc
Confidence 999999999999999999886221 111 0000000000 000000 1112234677999999999
Q ss_pred HHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCceEEEEEeccccc
Q 001044 784 ERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLDL 863 (1177)
Q Consensus 784 ~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~id~~l~d~ 863 (1177)
.+......+++.|+...++....+... .+- ..+++.++.+|+.++.+
T Consensus 678 n~~Va~~~l~~~g~~~~~~~sg~e~l~---~~~------------------------------~~~~y~~ifmD~qMP~m 724 (786)
T KOG0519|consen 678 NRKVATGMLKKLGAEVTEVNSGQEALD---KLK------------------------------PPHSYDVIFMDLQMPEM 724 (786)
T ss_pred hHHHHHHHHHHhCCeeEeecCcHHHHH---hcC------------------------------CCCcccEEEEEcCCccc
Confidence 999999999999998877653222111 110 23578899999999999
Q ss_pred ChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHH
Q 001044 864 SSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETA 925 (1177)
Q Consensus 864 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~ 925 (1177)
++.......+.... .....+..+.++.....++..+.|.+.++.||+...++...+...
T Consensus 725 DG~e~~~~irk~~~---~~~pIvAlTa~~~~~~~~~c~~~Gmd~yl~KP~~~~~l~~~l~~~ 783 (786)
T KOG0519|consen 725 DGYEATREIRKKER---WHLPIVALTADADPSTEEECLEVGMDGYLSKPFTLEKLVKILREF 783 (786)
T ss_pred chHHHHHHHHHhhc---CCCCEEEEecCCcHHHHHHHHHhCCceEEcccccHHHHHHHHHHH
Confidence 99544433332221 222233344446666778888899999999999998888876543
No 133
>PRK15029 arginine decarboxylase; Provisional
Probab=98.75 E-value=5.2e-08 Score=122.31 Aligned_cols=108 Identities=16% Similarity=0.191 Sum_probs=86.2
Q ss_pred cEEEEEecChH--------HHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001044 1022 LRILLAEDTPL--------IQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1093 (1177)
Q Consensus 1022 ~~ILIVdD~~~--------~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIl 1093 (1177)
++||||||+.. .++.+...|+..||+|..+.++++|++.+.. ...||+||
T Consensus 1 MkILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~----------------------~~~~DlVL 58 (755)
T PRK15029 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSS----------------------NEAIDCLM 58 (755)
T ss_pred CeEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh----------------------cCCCcEEE
Confidence 37999999995 6999999999999999999999999999853 13699999
Q ss_pred EeCCCCCCCHH----HHHHHHHhcccccCCCCcceEEEecCCC--HHHHHHHHHcCCCEEEECCCCHHHH
Q 001044 1094 MDCQMPKMDGY----EATIEIRKSESEHGARNIPIVALTAHAM--NADEKKCLGVGMNAYLTKPIDSERM 1157 (1177)
Q Consensus 1094 mDi~MP~mdG~----e~~r~IR~~~~~~~~~~ipIIalTa~~~--~~~~~~~l~aG~d~yL~KP~~~~~L 1157 (1177)
+|++||+|+|+ +++++||+.. ..+|||++|+... ...-...++ -+++|+-+--+..+.
T Consensus 59 LD~~LPd~dG~~~~~ell~~IR~~~-----~~iPIIlLTar~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 122 (755)
T PRK15029 59 FSYQMEHPDEHQNVRQLIGKLHERQ-----QNVPVFLLGDREKALAAMDRDLLE-LVDEFAWILEDTADF 122 (755)
T ss_pred EECCCCCCccchhHHHHHHHHHhhC-----CCCCEEEEEcCCcccccCCHHHHH-hhheEEEecCCCHHH
Confidence 99999999998 8999999642 3699999999986 221122222 257788877665554
No 134
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=98.71 E-value=3.9e-06 Score=98.74 Aligned_cols=186 Identities=24% Similarity=0.436 Sum_probs=131.6
Q ss_pred HHhHHhhhhHHHHHHHHH----HHhhcCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHHH
Q 001044 500 ANMSHELRTPMAAIIGLL----EILKSDD--QLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQK 573 (1177)
Q Consensus 500 a~~SHELRTPL~~I~G~~----elL~~~~--~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~l~~~~~dL~~ 573 (1177)
+.|+-||.--|+-.+.++ .+|+... ...++.++.+..|+.....--+-+.+||.--|+ ..++-+|..
T Consensus 374 atIAReLHDSiAQsLS~LkiQvt~L~~~~~~~~~e~s~~~i~~~r~~Ln~~Y~QLRELLtTFRl-------tL~e~~L~~ 446 (574)
T COG3850 374 ATIARELHDSIAQSLSFLKIQVTLLKTAIPEELPEKAREIIAQIRQGLNDAYRQLRELLTTFRL-------TLQEAELPP 446 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcccCchHH
Confidence 355666666665555554 4454321 344566677888888888888888888876554 334567778
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEcCCCCCc-eEEeC-HHHHHHHHHHHHhhHhhccCCCeEEEEeeccccCCCCCCCcCC
Q 001044 574 ELEELVDMFSVQCSNHNVETVLDLSDNIPR-NVRGD-PGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFP 651 (1177)
Q Consensus 574 li~~vv~~~~~~a~~k~I~l~~~i~~~~p~-~V~gD-~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~~~~~~~ 651 (1177)
-++++++.|.. +-++.+.++.. +|. .+..+ .-.+-||+.-=++||+||+....|.|.+...
T Consensus 447 AL~~~~~~f~~---qtg~~~~l~~q--lp~~~lpa~qqvHlLqIvREAlsNa~KHa~As~i~V~~~~~------------ 509 (574)
T COG3850 447 ALEQMLAEFSN---QTGITVTLDYQ--LPPRALPAHQQVHLLQIVREALSNAIKHAQASEIKVTVSQN------------ 509 (574)
T ss_pred HHHHHHHHHHh---ccCCeEEEecc--CCCCCCCHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEEec------------
Confidence 88888887754 45676666643 222 12222 2347789999999999999888887765311
Q ss_pred cccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHHHHHHHH
Q 001044 652 TDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 731 (1177)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~IV 731 (1177)
+ ..+.+.|+|+|+|||+.. . .+| --||.|-+.=+
T Consensus 510 --------------------------~--g~~~~~VeDnG~Gi~~~~-----------e------~~g-HyGL~IM~ERA 543 (574)
T COG3850 510 --------------------------D--GQVTLTVEDNGVGIDEAA-----------E------PSG-HYGLNIMRERA 543 (574)
T ss_pred --------------------------C--CeEEEEEeeCCcCCCCcc-----------C------CCC-CcchHHHHHHH
Confidence 1 247799999999998752 1 123 57899999999
Q ss_pred HHcCCEEEEEEeCCCceEEEEEEe
Q 001044 732 NKMGGEIKVVKKNSPGTLMQLYLL 755 (1177)
Q Consensus 732 e~~GG~I~v~S~~g~GT~f~~~Lp 755 (1177)
+..||++++++.+|+||.+.++||
T Consensus 544 ~~L~~~L~i~~~~~gGT~V~ltf~ 567 (574)
T COG3850 544 QRLGGQLRIRRREGGGTEVSLTFP 567 (574)
T ss_pred HHhcCeEEEeecCCCCeEEEEEec
Confidence 999999999999999999999986
No 135
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=98.69 E-value=5.1e-08 Score=108.21 Aligned_cols=115 Identities=33% Similarity=0.524 Sum_probs=96.2
Q ss_pred cEEEEEecChHHHHHHHHHHhhc-CCE-EEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKV-GAT-VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1099 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~-G~~-v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP 1099 (1177)
++|+++||++..+..+..++... +++ +..+.++.++++.++. ..+|++|+|+.||
T Consensus 2 ~~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~fldI~~~ 58 (244)
T COG3279 2 LKVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQG-----------------------LRPDLVFLDIAMP 58 (244)
T ss_pred CcEEEecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHHhc-----------------------cCCCeEEEeeccC
Confidence 47999999999999999999842 222 2368999999999864 3799999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001044 1100 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1166 (1177)
Q Consensus 1100 ~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~ 1166 (1177)
.|+|+|+.++||... ...+||++|++..- ...+++..+-|||.||++.+.|...+.++.+
T Consensus 59 ~~~G~ela~~i~~~~-----~~~~Ivfvt~~~~~--a~~afev~a~d~i~kp~~~~~l~~~l~~~~~ 118 (244)
T COG3279 59 DINGIELAARIRKGD-----PRPAIVFVTAHDEY--AVAAFEVEALDYLLKPISEERLAKTLERLRR 118 (244)
T ss_pred ccchHHHHHHhcccC-----CCCeEEEEEehHHH--HHHHHhHHHHhhhcCcchHHHHHHHHHHHHH
Confidence 999999999999863 34789999998754 4567788999999999999999999986543
No 136
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=98.67 E-value=2.9e-05 Score=86.00 Aligned_cols=184 Identities=18% Similarity=0.275 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHHHHHHHHHHHHHHHHhc
Q 001044 509 PMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSN 588 (1177)
Q Consensus 509 PL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~l~~~~~dL~~li~~vv~~~~~~a~~ 588 (1177)
-|-+.+-.+|++...-..++. -....|.+++++|..-|+++--+|. .--+--..+.-|..-++-+++.|+ ++
T Consensus 265 ~LVs~k~~lela~~ql~~p~~--~a~~aieKaa~aL~~Ai~EVRRiSH---~LRP~~LDDLGL~aALe~L~~~f~---~~ 336 (459)
T COG4564 265 NLVSVKCALELAARQLNPPKG--GAHPAIEKAADALNGAIKEVRRISH---DLRPRALDDLGLTAALEALLEDFK---ER 336 (459)
T ss_pred HHHHHHHHHHHHhccCCCCCC--CCchhhhhHHHHHHHHHHHHHHhcc---ccChhhhhhhhHHHHHHHHHHHhh---hc
Confidence 345666677776543222211 1124577888888888887765543 111111223445566666666665 66
Q ss_pred CCcEEEEEcCCCCCceEE-eCHHHHHHHHHHHHhhHhhccCCCeEEEEeeccccCCCCCCCcCCcccccccchhhhhhhh
Q 001044 589 HNVETVLDLSDNIPRNVR-GDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQ 667 (1177)
Q Consensus 589 k~I~l~~~i~~~~p~~V~-gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (1177)
.|+++.++.+.. |..+. .-...|.+|..--++|-=+|+..-.|.+...
T Consensus 337 tg~~itle~~~~-p~~l~~e~~talyRv~QEaltNIErHa~Atrv~ill~------------------------------ 385 (459)
T COG4564 337 TGIEITLEFDTQ-PGKLKPEVATALYRVVQEALTNIERHAGATRVTILLQ------------------------------ 385 (459)
T ss_pred cCeEEEEEecCC-cccCCcHHHHHHHHHHHHHHHHHHhhcCCeEEEEEec------------------------------
Confidence 888888876543 32222 2345688999999999999985555555431
Q ss_pred hhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHHHHHHHHHHcCCEEEEEEeCCCc
Q 001044 668 QANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPG 747 (1177)
Q Consensus 668 ~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~IVe~~GG~I~v~S~~g~G 747 (1177)
.....+.+.|+|+|.|++-+... ..-.||||-=-++=+...||++.|+|.+. |
T Consensus 386 ----------~~~d~vql~vrDnG~GF~~~~~~----------------~~~~GiGLRNMrERma~~GG~~~v~s~p~-G 438 (459)
T COG4564 386 ----------QMGDMVQLMVRDNGVGFSVKEAL----------------QKRHGIGLRNMRERMAHFGGELEVESSPQ-G 438 (459)
T ss_pred ----------cCCcceEEEEecCCCCccchhhc----------------cCccccccccHHHHHHHhCceEEEEecCC-C
Confidence 11234788999999999765431 11269999999999999999999999876 9
Q ss_pred eEEEEEEecCC
Q 001044 748 TLMQLYLLLGA 758 (1177)
Q Consensus 748 T~f~~~Lpl~~ 758 (1177)
|..++.||+..
T Consensus 439 Tel~v~Lp~~~ 449 (459)
T COG4564 439 TELTVLLPLDA 449 (459)
T ss_pred cEEEEEecchh
Confidence 99999999753
No 137
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=98.61 E-value=2.8e-07 Score=95.92 Aligned_cols=102 Identities=22% Similarity=0.299 Sum_probs=76.7
Q ss_pred CHHHHHHHHHHHHhhHhhccCC----CeEEEEeeccccCCCCCCCcCCcccccccchhhhhhhhhhcccccccCCCceEE
Q 001044 608 DPGRVFQIFSNLINNSIKFTSS----GHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLAL 683 (1177)
Q Consensus 608 D~~rL~QIL~NLL~NAIKfT~~----G~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 683 (1177)
|...++.++..++.||++|... |.|.|.+... ...+
T Consensus 39 ~~~~l~lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~~----------------------------------------~~~l 78 (161)
T PRK04069 39 DIEDMKIAVSEACTNAVQHAYKEDEVGEIHIRFEIY----------------------------------------EDRL 78 (161)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEE----------------------------------------CCEE
Confidence 5567888999999999999853 4455543211 1258
Q ss_pred EEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecC
Q 001044 684 CFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLG 757 (1177)
Q Consensus 684 ~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~IVe~~GG~I~v~S~~g~GT~f~~~Lpl~ 757 (1177)
.|.|.|+|+||+++.++..|.+|+..++.. ...+.|+||.++++|++. +.+.+ +.|++|++.-.+.
T Consensus 79 ~i~V~D~G~g~d~~~~~~~~~p~~~~~~~~--~~~~~G~GL~li~~l~d~----v~~~~--~~G~~v~~~k~~~ 144 (161)
T PRK04069 79 EIVVADNGVSFDYETLKSKLGPYDISKPIE--DLREGGLGLFLIETLMDD----VTVYK--DSGVTVSMTKYIN 144 (161)
T ss_pred EEEEEECCcCCChHHhccccCCCCCCCccc--ccCCCceeHHHHHHHHHh----EEEEc--CCCcEEEEEEEcC
Confidence 899999999999999999999988655432 224679999999999986 66664 4688888876654
No 138
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=98.45 E-value=2.6e-05 Score=90.61 Aligned_cols=130 Identities=28% Similarity=0.429 Sum_probs=92.4
Q ss_pred ceeccHHHHHHHHHHHHHHHHhc--CCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhcc-----CCCeEEEEeec
Q 001044 566 NTEFDLQKELEELVDMFSVQCSN--HNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFT-----SSGHIIIRGWC 638 (1177)
Q Consensus 566 ~~~~dL~~li~~vv~~~~~~a~~--k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT-----~~G~v~v~~~~ 638 (1177)
.+.+.|.+.++++-..++..-.+ ..+++.+++++.+-. +.. |. -++.=|+.|||||. +.|.|.|.+.+
T Consensus 414 ~~~v~L~kEl~~v~AYl~IEkARF~~rL~v~i~id~~l~~-~~i-P~---filQPLVENAIKHG~~~~~~~g~V~I~V~~ 488 (557)
T COG3275 414 QEIVTLSKELEHVNAYLSIEKARFGDRLDVVIDIDEELRQ-VQI-PS---FILQPLVENAIKHGISQLKDTGRVTISVEK 488 (557)
T ss_pred ceEeehHHHHHHHHHHHHHHHHhcCCceEEEEecCHHHhh-ccC-ch---hhhhHHHHHHHHhcccchhcCCceEEEEEE
Confidence 44688999999987776644332 234555555544311 111 22 24567899999996 24677776543
Q ss_pred cccCCCCCCCcCCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCC
Q 001044 639 ENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHG 718 (1177)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~ 718 (1177)
. + ..++++|+|+|.||+++ ...
T Consensus 489 ~--------------------------------------d--~~l~i~VeDng~li~p~------------------~~~ 510 (557)
T COG3275 489 E--------------------------------------D--ADLRIEVEDNGGLIQPD------------------EED 510 (557)
T ss_pred e--------------------------------------C--CeEEEEEecCCCCcCCC------------------CCC
Confidence 2 1 12789999999999886 234
Q ss_pred ccchhHHHHHHHHHHcCC---EEEEEEeCCCceEEEEEEecCC
Q 001044 719 GTGLGLSIVRTLVNKMGG---EIKVVKKNSPGTLMQLYLLLGA 758 (1177)
Q Consensus 719 GtGLGLaIvk~IVe~~GG---~I~v~S~~g~GT~f~~~Lpl~~ 758 (1177)
|+|+||+.+++=++.+=| -+.+++.+..||++.|.+|...
T Consensus 511 g~giGL~nv~~RLk~lyG~~~gl~i~~~~q~gTri~f~lp~~~ 553 (557)
T COG3275 511 GTGIGLANVHKRLKLLYGDDEGLHIESLEQAGTRIIFRLPLQR 553 (557)
T ss_pred CCChHHHHHHHHHHHhcCccccceEEeccCCCcEEEEEecCcc
Confidence 899999999998888888 7999999999999999999753
No 139
>smart00388 HisKA His Kinase A (phosphoacceptor) domain. Dimerisation and phosphoacceptor domain of histidine kinases.
Probab=98.41 E-value=1e-06 Score=75.44 Aligned_cols=64 Identities=52% Similarity=0.786 Sum_probs=55.2
Q ss_pred HHHHHHHhHHhhhhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001044 495 KSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVES 559 (1177)
Q Consensus 495 Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEs 559 (1177)
+.+|++.++|||||||++|.++++.+.. ...+++....+..+..++.++..++++++++++.+.
T Consensus 2 ~~~~~~~i~Hel~~pl~~i~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 65 (66)
T smart00388 2 KREFLANLSHELRTPLTAIRGYLELLED-TELSEEQREYLETILRSAERLLRLINDLLDLSRIEA 65 (66)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3579999999999999999999998875 334555577888899999999999999999999865
No 140
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=98.39 E-value=1.4e-05 Score=90.21 Aligned_cols=150 Identities=19% Similarity=0.360 Sum_probs=109.3
Q ss_pred ceeccHHHHHHHHHHHHHHHHhcCCc---EEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccCC-----Ce----EE
Q 001044 566 NTEFDLQKELEELVDMFSVQCSNHNV---ETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSS-----GH----II 633 (1177)
Q Consensus 566 ~~~~dL~~li~~vv~~~~~~a~~k~I---~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~-----G~----v~ 633 (1177)
...+++.++|+++.+..+..|..+=+ ++.++.+...... ..=|..|.-++.-|+.||++.|-+ |. |.
T Consensus 213 ~~~c~v~~vi~~a~e~ar~lCd~yy~~sPel~i~~~~a~~~~-vyvPshL~ymlfElfKNamrATve~h~~~~~~~ppI~ 291 (414)
T KOG0787|consen 213 DPRCSVKKVIKDASENARFLCDQYYLNSPELIIEGHNALSFT-VYVPSHLYYMLFELFKNAMRATVEHHGDDGDELPPIK 291 (414)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhccCCCeeEecCcccccCc-cccchHHHHHHHHHHHHHHHHHHHHhccCCCCCCCeE
Confidence 34689999999999988877776532 3344333332221 135788999999999999999832 22 33
Q ss_pred EEeeccccCCCCCCCcCCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCC--
Q 001044 634 IRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDP-- 711 (1177)
Q Consensus 634 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~-- 711 (1177)
|.+. . ++.-+.|.|+|.|-||+.++++++|.=-|...+
T Consensus 292 V~V~---------------------------------------~-gdeDl~ikISDrGGGV~~~~~drlf~Y~ySTa~~~ 331 (414)
T KOG0787|consen 292 VTVA---------------------------------------K-GDEDLLIKISDRGGGVPHRDIDRLFSYMYSTAPAP 331 (414)
T ss_pred EEEe---------------------------------------c-CCcceEEEEecCCCCcChhHHHHHHhhhcccCCCC
Confidence 3221 1 112266889999999999999999986654322
Q ss_pred ----CCCCCCCccchhHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEec
Q 001044 712 ----STTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 756 (1177)
Q Consensus 712 ----s~~~~~~GtGLGLaIvk~IVe~~GG~I~v~S~~g~GT~f~~~Lpl 756 (1177)
..+..-.|.|-||.|||...+..||++.+.|-+|-||...++|..
T Consensus 332 ~~d~~~~~plaGfG~GLPisrlYa~yf~Gdl~L~SleG~GTD~yI~Lk~ 380 (414)
T KOG0787|consen 332 SSDNNRTAPLAGFGFGLPISRLYARYFGGDLKLQSLEGIGTDVYIYLKA 380 (414)
T ss_pred CCCCCCcCcccccccCCcHHHHHHHHhCCCeeEEeeeccccceEEEecc
Confidence 223334699999999999999999999999999999999888854
No 141
>PRK15426 putative diguanylate cyclase YedQ; Provisional
Probab=98.36 E-value=4.4e-05 Score=95.27 Aligned_cols=72 Identities=18% Similarity=0.277 Sum_probs=59.2
Q ss_pred Cccceee--eecccCccceeeeccccCCCCCCCcEEEEEEeehhhhHHHHHHHHHH-hhcCeEEEEECCcceEEEecCC
Q 001044 274 VASWHVA--VSKFTNSPLLSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKELV-EVHSGHIYLTSQEGYLLATSTN 349 (1177)
Q Consensus 274 ~~~w~~~--~~~~~~~~~~~~~~pv~~~~~~~~~~~~v~gv~~~~~~i~~~l~~l~-~~~~~~iyi~~~~G~ll~~s~~ 349 (1177)
...|+.. +...++.++++.+.||++ +|.++||+|++..+..+.++++.+. .+..|.+|+.|.+|.+++++..
T Consensus 220 ~~~~~~~~~~d~~tg~~vit~s~pv~~----~g~~~GVv~~di~l~~l~~~l~~~~~~~~~g~~~Lvd~~G~iia~~~~ 294 (570)
T PRK15426 220 GVRWFTSQPDDASNTEPQVTASVPVDA----GNYWYGVLAMDIPVRSLQQFLRNAIDKDLDGEYQLYDSHLRLLTSSAP 294 (570)
T ss_pred CeeEecCCcccccCCCeEEEEEEEEcc----CCeEEEEEEEEecHHHHHHHHHHhhccCCCcEEEEEcCCCcEEEecCc
Confidence 4447755 344557889999999976 5789999999999999999998875 5778999999999999987653
No 142
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=98.35 E-value=3e-06 Score=88.05 Aligned_cols=101 Identities=22% Similarity=0.304 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHhhHhhccCC----CeEEEEeeccccCCCCCCCcCCcccccccchhhhhhhhhhcccccccCCCceEEE
Q 001044 609 PGRVFQIFSNLINNSIKFTSS----GHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALC 684 (1177)
Q Consensus 609 ~~rL~QIL~NLL~NAIKfT~~----G~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 684 (1177)
...+..++..++.||++|+.. |.|.|..+.. ...+.
T Consensus 40 ~~~l~lav~Ea~~Nai~ha~~~~~~~~I~I~~~~~----------------------------------------~~~l~ 79 (159)
T TIGR01924 40 IEDLKIAVSEACTNAVKHAYKEGENGEIGISFHIY----------------------------------------EDRLE 79 (159)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEe----------------------------------------CCEEE
Confidence 345888999999999999843 4565543211 12478
Q ss_pred EEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecC
Q 001044 685 FEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLG 757 (1177)
Q Consensus 685 i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~IVe~~GG~I~v~S~~g~GT~f~~~Lpl~ 757 (1177)
+.|.|+|.|++++.++..|.+++...+.. ...+.|+||.|+++|++ ++.+.+ ++|+++++...+.
T Consensus 80 i~V~D~G~gfd~~~~~~~~~~~~~~~~~~--~~~~~G~GL~Li~~L~D----~v~~~~--~~G~~l~l~k~~~ 144 (159)
T TIGR01924 80 IIVSDQGDSFDMDTFKQSLGPYDGSEPID--DLREGGLGLFLIETLMD----EVEVYE--DSGVTVAMTKYLN 144 (159)
T ss_pred EEEEEcccccCchhhccccCCCCCCCCcc--cCCCCccCHHHHHHhcc----EEEEEe--CCCEEEEEEEEEc
Confidence 99999999999999998888876544332 23466999999999998 677766 4678887776554
No 143
>PF14501 HATPase_c_5: GHKL domain
Probab=98.24 E-value=1.3e-05 Score=76.44 Aligned_cols=92 Identities=21% Similarity=0.339 Sum_probs=63.0
Q ss_pred CHHHHHHHHHHHHhhHhhccCC----CeEEEEeeccccCCCCCCCcCCcccccccchhhhhhhhhhcccccccCCCceEE
Q 001044 608 DPGRVFQIFSNLINNSIKFTSS----GHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLAL 683 (1177)
Q Consensus 608 D~~rL~QIL~NLL~NAIKfT~~----G~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 683 (1177)
|+.-|-.+|.|||+||++++.. ..|.+.+.. ....+
T Consensus 2 ~~~dl~~il~nlldNAiea~~~~~~~~~I~i~~~~----------------------------------------~~~~~ 41 (100)
T PF14501_consen 2 DDLDLCRILGNLLDNAIEACKKYEDKRFISISIRE----------------------------------------ENGFL 41 (100)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEe----------------------------------------cCCEE
Confidence 4566889999999999999742 234443321 12357
Q ss_pred EEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHHHHHHHHHHcCCEEEEEEeCCCceEEEEEE
Q 001044 684 CFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYL 754 (1177)
Q Consensus 684 ~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~IVe~~GG~I~v~S~~g~GT~f~~~L 754 (1177)
.|.|+++-.+ + .++++ +.+.+.++.|+||..++++++.++|++.++.+.+ .|++.+
T Consensus 42 ~i~i~N~~~~---~-~~~~~--------~~~~~~~~~G~GL~~v~~i~~~y~g~~~~~~~~~---~f~~~i 97 (100)
T PF14501_consen 42 VIIIENSCEK---E-IEKLE--------SSSSKKKGHGIGLKNVKKILEKYNGSLSIESEDG---IFTVKI 97 (100)
T ss_pred EEEEEECCCC---c-ccccc--------ccccCCCCCCcCHHHHHHHHHHCCCEEEEEEECC---EEEEEE
Confidence 7899998554 1 12222 1234567899999999999999999999987744 444443
No 144
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.20 E-value=1.3e-05 Score=105.62 Aligned_cols=118 Identities=18% Similarity=0.211 Sum_probs=98.9
Q ss_pred ccCCcEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCC
Q 001044 1018 ILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ 1097 (1177)
Q Consensus 1018 ~~~g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~ 1097 (1177)
.+.+.+||++||++..+..+..+|+..|+.+..+.++.+ +. ...||++++|..
T Consensus 533 ~~~g~~ili~d~~~~~~~~l~~~L~~~g~~v~~~~~~~~----l~-----------------------~~~~d~il~~~~ 585 (919)
T PRK11107 533 CLAGKRLLYVEPNSAAAQATLDILSETPLEVTYSPTLSQ----LP-----------------------EAHYDILLLGLP 585 (919)
T ss_pred ccCCCeEEEEeCCHHHHHHHHHHHHHCCCEEEEcCCHHH----hc-----------------------cCCCCEEEeccc
Confidence 356789999999999999999999999999999999887 22 247999999999
Q ss_pred CCCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHh
Q 001044 1098 MPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLT 1165 (1177)
Q Consensus 1098 MP~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~ 1165 (1177)
||.+++.+.+....+.... ...++|+++..........+.+.|+++|+.||++..+|..++....
T Consensus 586 ~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 650 (919)
T PRK11107 586 VTFREPLTMLHERLAKAKS---MTDFLILALPCHEQVLAEQLKQDGADACLSKPLSHTRLLPALLEPC 650 (919)
T ss_pred CCCCCCHHHHHHHHHhhhh---cCCcEEEEeCCcchhhHHHHhhCCCceEECCCCCHHHHHHHHHHhh
Confidence 9998877665555443222 2357888888888888999999999999999999999999988755
No 145
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes.
Probab=98.15 E-value=9.6e-06 Score=68.80 Aligned_cols=62 Identities=48% Similarity=0.697 Sum_probs=53.3
Q ss_pred HHHHHHHhHHhhhhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001044 495 KSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSK 556 (1177)
Q Consensus 495 Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSk 556 (1177)
+.++++.++|||||||++|.++++.+.......++....+..+..++.++..+++++++++|
T Consensus 4 ~~~~~~~~~hel~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 65 (65)
T cd00082 4 KGEFLANVSHELRTPLTAIRGALELLEEELLDDEEQREYLERIREEAERLLRLINDLLDLSR 65 (65)
T ss_pred HHHHHHHHhHHhcchHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 55799999999999999999999998765444566667888899999999999999999875
No 146
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=98.11 E-value=2.3e-06 Score=100.82 Aligned_cols=92 Identities=27% Similarity=0.422 Sum_probs=81.1
Q ss_pred CEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceE
Q 001044 1046 ATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIV 1125 (1177)
Q Consensus 1046 ~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~mdG~e~~r~IR~~~~~~~~~~ipII 1125 (1177)
++|.++..|.+|++.+.. +++|.+++|++||+|||+|+|+++++.+. +++
T Consensus 13 ~~v~~a~~g~~~l~~~~~-----------------------~~~~~~lld~~m~~~~~~~~~~~lk~~~~-------~~v 62 (435)
T COG3706 13 KEVATAKKGLIALAILLD-----------------------HKPDYKLLDVMMPGMDGFELCRRLKAEPA-------TVV 62 (435)
T ss_pred hhhhhccchHHHHHHHhc-----------------------CCCCeEEeecccCCcCchhHHHHHhcCCc-------ceE
Confidence 467779999999998853 58999999999999999999999997532 399
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001044 1126 ALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1167 (1177)
Q Consensus 1126 alTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~ 1167 (1177)
++|+.....+..+.+++|++++|+||++...+..+...+...
T Consensus 63 ~~t~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~r~~~l~~~ 104 (435)
T COG3706 63 MVTALDDSAPRVRGLKAGADDFLTKPVNDSQLFLRAKSLVRL 104 (435)
T ss_pred EEEecCCCCcchhHHhhhhhhhccCCCChHHHHHhhhhhccc
Confidence 999999999999999999999999999999998888776543
No 147
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=98.03 E-value=4e-06 Score=76.69 Aligned_cols=72 Identities=18% Similarity=0.505 Sum_probs=61.2
Q ss_pred ceeee-ecccCccceeeeccccCCCCCCCcEEEEEEeehhhhHHHHHHHHHHhhcCeEEEEECCcceEEEecCCCc
Q 001044 277 WHVAV-SKFTNSPLLSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAP 351 (1177)
Q Consensus 277 w~~~~-~~~~~~~~~~~~~pv~~~~~~~~~~~~v~gv~~~~~~i~~~l~~l~~~~~~~iyi~~~~G~ll~~s~~~~ 351 (1177)
|+..| +..++.++++++.|||+. +|+++||++++..+..+.++++.+..+..|.+|+.|++|.+++++..+.
T Consensus 1 ~s~py~~~~~~~~vi~~s~pi~~~---~g~~~Gvv~~di~l~~l~~~i~~~~~~~~g~~~ivd~~G~ii~hp~~~~ 73 (81)
T PF02743_consen 1 WSEPYVDAATGQPVITISVPIYDD---DGKIIGVVGIDISLDQLSEIISNIKFGNNGYAFIVDKNGTIIAHPDKDL 73 (81)
T ss_dssp E---EEETTTTEEEEEEEEEEEET---TTEEEEEEEEEEEHHHHHHHHTTSBBTTTBEEEEEETTSBBCE-SSGGC
T ss_pred CCcCEEeCCCCcEEEEEEEEEECC---CCCEEEEEEEEeccceeeeEEEeeEECCCEEEEEEECCCCEEEeCChHH
Confidence 67444 555689999999999995 8999999999999999999999999999999999999999999876543
No 148
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.80 E-value=0.00012 Score=84.67 Aligned_cols=97 Identities=20% Similarity=0.236 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHhhHhhccCCCeEEEEeeccccCCCCCCCcCCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEe
Q 001044 610 GRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDD 689 (1177)
Q Consensus 610 ~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D 689 (1177)
..+.+++.|||+||+++.. ..|.|.+.. + ....|+|.|
T Consensus 21 ~~~~~~l~eLi~Na~dA~a-~~I~i~~~~---------------------------------------~--~~~~i~V~D 58 (312)
T TIGR00585 21 ERPASVVKELVENSLDAGA-TRIDVEIEE---------------------------------------G--GLKLIEVSD 58 (312)
T ss_pred hhHHHHHHHHHHHHHHCCC-CEEEEEEEe---------------------------------------C--CEEEEEEEe
Confidence 3578999999999999864 455554310 1 124589999
Q ss_pred CCCCCChhhHhhhhcccccCCCCC------CCCCCccchhHHHHHHHHHHcCCEEEEEEeC--CCceEEEEE
Q 001044 690 TGCGIDQSKWETVFESFEQGDPST------TRKHGGTGLGLSIVRTLVNKMGGEIKVVKKN--SPGTLMQLY 753 (1177)
Q Consensus 690 tG~GI~~e~l~~IFe~F~q~d~s~------~~~~~GtGLGLaIvk~IVe~~GG~I~v~S~~--g~GT~f~~~ 753 (1177)
+|.||++++++++|++|+..+... ....|--|.||+-...+ +++.|.|.. +.+..+.+.
T Consensus 59 nG~Gi~~~~l~~~~~~~~tsk~~~~~~~~~~~~~G~rG~al~si~~~-----s~~~i~S~~~~~~~~~~~~~ 125 (312)
T TIGR00585 59 NGSGIDKEDLPLACERHATSKIQSFEDLERIETLGFRGEALASISSV-----SRLTITTKTSAADGLAWQAL 125 (312)
T ss_pred cCCCCCHHHHHHHhhCCCcCCCCChhHhhcccccCccchHHHHHHhh-----CcEEEEEeecCCCcceEEEE
Confidence 999999999999999999765421 12235558888655444 368888875 444444443
No 149
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=97.57 E-value=0.00017 Score=83.39 Aligned_cols=115 Identities=19% Similarity=0.242 Sum_probs=83.4
Q ss_pred CHHHHHHHHHHHHhhHhhccCCCeE----EEEeeccccCCCCCCCcCCcccccccchhhhhhhhhhcccccccCCCceEE
Q 001044 608 DPGRVFQIFSNLINNSIKFTSSGHI----IIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLAL 683 (1177)
Q Consensus 608 D~~rL~QIL~NLL~NAIKfT~~G~v----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 683 (1177)
-...|.|++.-|+.||+..|+..+| .|.+. ..++...
T Consensus 33 p~RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~---------------------------------------~~~~d~y 73 (538)
T COG1389 33 PIRSLTTTVHELVTNSLDACEEAGILPDIKVEIE---------------------------------------RIGKDHY 73 (538)
T ss_pred chhHHHHHHHHHHhcchhhHHhcCCCCceEEEEE---------------------------------------ecCCceE
Confidence 3456999999999999999986443 33221 1223457
Q ss_pred EEEEEeCCCCCChhhHhhhhcccccCCCC-CCC-CCCccchhHHHHHHHHHHcCCE-EEEEEeCCC-ceEEEEEEecCCC
Q 001044 684 CFEVDDTGCGIDQSKWETVFESFEQGDPS-TTR-KHGGTGLGLSIVRTLVNKMGGE-IKVVKKNSP-GTLMQLYLLLGAS 759 (1177)
Q Consensus 684 ~i~V~DtG~GI~~e~l~~IFe~F~q~d~s-~~~-~~~GtGLGLaIvk~IVe~~GG~-I~v~S~~g~-GT~f~~~Lpl~~~ 759 (1177)
.+.|.|||+|||+++++++|-++.-++.- ... .-|-.|||.+-|=-..++.-|+ +.|.|..+. ++...+.|-+...
T Consensus 74 ~v~veDNGpGIP~e~IPkvFGk~LygSKfh~~~QsRGqqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l~id~~ 153 (538)
T COG1389 74 KVIVEDNGPGIPEEQIPKVFGKMLYGSKFHRNIQSRGQQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYELKIDVQ 153 (538)
T ss_pred EEEEecCCCCCChhHhHHHHHHHhccchhhhhhhccccccccHHHHHHHHHhcCCCceEEEecCCCCcceEEEEEEecCC
Confidence 78999999999999999999877554432 111 1245799999999999998886 677776654 8888888776654
Q ss_pred Cc
Q 001044 760 SE 761 (1177)
Q Consensus 760 ~~ 761 (1177)
.+
T Consensus 154 kN 155 (538)
T COG1389 154 KN 155 (538)
T ss_pred CC
Confidence 43
No 150
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=97.39 E-value=0.001 Score=65.85 Aligned_cols=93 Identities=19% Similarity=0.241 Sum_probs=65.4
Q ss_pred CHHHHHHHHHHHHhhHhhccCC----CeEEEEeeccccCCCCCCCcCCcccccccchhhhhhhhhhcccccccCCCceEE
Q 001044 608 DPGRVFQIFSNLINNSIKFTSS----GHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLAL 683 (1177)
Q Consensus 608 D~~rL~QIL~NLL~NAIKfT~~----G~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 683 (1177)
+...+.-++.-++.||++|+.. +.|.|.... ....+
T Consensus 28 ~~~~~~lav~E~~~Nav~H~~~~~~~~~v~v~~~~----------------------------------------~~~~l 67 (125)
T PF13581_consen 28 DRDDLELAVSEALTNAVEHGYPGDPDGPVDVRLEV----------------------------------------DPDRL 67 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEEEE----------------------------------------cCCEE
Confidence 3457888999999999999865 345554321 12248
Q ss_pred EEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHHHHHHHHHHcCCEEEEEEeCCCceEEEEE
Q 001044 684 CFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLY 753 (1177)
Q Consensus 684 ~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~IVe~~GG~I~v~S~~g~GT~f~~~ 753 (1177)
.++|.|.|.|+++.....--..= .......|+||.|++++++.+ .+ + .+.|+++++.
T Consensus 68 ~i~v~D~G~~~d~~~~~~~~~~~-------~~~~~~~G~Gl~li~~l~D~~----~~-~-~~~gn~v~l~ 124 (125)
T PF13581_consen 68 RISVRDNGPGFDPEQLPQPDPWE-------PDSLREGGRGLFLIRSLMDEV----DY-R-EDGGNTVTLR 124 (125)
T ss_pred EEEEEECCCCCChhhccCccccc-------CCCCCCCCcCHHHHHHHHcEE----EE-E-CCCeEEEEEE
Confidence 89999999999887654332100 022346799999999999876 44 3 7889988764
No 151
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=96.61 E-value=0.012 Score=45.69 Aligned_cols=54 Identities=41% Similarity=0.647 Sum_probs=47.9
Q ss_pred EEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001044 1023 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1099 (1177)
Q Consensus 1023 ~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP 1099 (1177)
++++++|++..+..+...+...|+.+..+.++.++...+.. ..||++++|+.+|
T Consensus 2 ~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~vi~~~~~~ 55 (55)
T smart00448 2 RILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKE-----------------------EKPDLILLDIMMP 55 (55)
T ss_pred eEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHHh-----------------------cCCCEEEEeccCC
Confidence 68999999999999999999999999999999999987753 3699999998775
No 152
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=96.41 E-value=0.019 Score=55.85 Aligned_cols=106 Identities=19% Similarity=0.210 Sum_probs=74.8
Q ss_pred EEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCcc-EEEEeCCCCCC
Q 001044 1023 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFD-LILMDCQMPKM 1101 (1177)
Q Consensus 1023 ~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-LIlmDi~MP~m 1101 (1177)
||||+|||..-+.-+..+|+-+|.++..+...+- ..... ..+.+ +++....++
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~-~~~~~-----------------------~~~~~~~~v~~g~~~-- 54 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDW-SQADW-----------------------SSPWEACAVILGSCS-- 54 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHH-HHhhh-----------------------hcCCcEEEEEecCch--
Confidence 5999999999999999999999999998886543 12111 12333 445555544
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL 1164 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1164 (1177)
...+.++.+-+. .+++|++.+.......+. ..+-+-|..|++..+|.+.++++
T Consensus 55 ~~~~~l~~l~~~-----~~~~Pvlllg~~~~~~~~-----~nvvg~Le~Pl~Y~qLt~~L~~c 107 (109)
T PF06490_consen 55 KLAELLKELLKW-----APHIPVLLLGEHDSPEEL-----PNVVGELEEPLNYPQLTDALHRC 107 (109)
T ss_pred hHHHHHHHHHhh-----CCCCCEEEECCCCccccc-----cCeeEecCCCCCHHHHHHHHHHh
Confidence 444555555543 357999999987766211 11666799999999999999875
No 153
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=96.24 E-value=0.018 Score=72.72 Aligned_cols=87 Identities=18% Similarity=0.288 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhhHhhccCCCeEEEEeeccccCCCCCCCcCCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeC
Q 001044 611 RVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDT 690 (1177)
Q Consensus 611 rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~Dt 690 (1177)
++..|+..||+||+... ...|.|.+. .+ ....|+|.|+
T Consensus 22 ~~~svvkElveNsiDAg-at~I~v~i~---------------------------------------~~--g~~~i~V~Dn 59 (617)
T PRK00095 22 RPASVVKELVENALDAG-ATRIDIEIE---------------------------------------EG--GLKLIRVRDN 59 (617)
T ss_pred CHHHHHHHHHHHHHhCC-CCEEEEEEE---------------------------------------eC--CeEEEEEEEc
Confidence 56789999999999964 345555431 01 1356899999
Q ss_pred CCCCChhhHhhhhcccccCCCCCC------CCCCccchhHHHHHHHHHHcCCEEEEEEeC
Q 001044 691 GCGIDQSKWETVFESFEQGDPSTT------RKHGGTGLGLSIVRTLVNKMGGEIKVVKKN 744 (1177)
Q Consensus 691 G~GI~~e~l~~IFe~F~q~d~s~~------~~~~GtGLGLaIvk~IVe~~GG~I~v~S~~ 744 (1177)
|+||++++++.+|.+++..+-... ...|=-|.||+-+-.+ +++.|.|..
T Consensus 60 G~Gi~~~~~~~~~~~~~tsKi~~~~dl~~~~t~GfrGeAL~sI~~v-----s~l~i~s~~ 114 (617)
T PRK00095 60 GCGISKEDLALALARHATSKIASLDDLEAIRTLGFRGEALPSIASV-----SRLTLTSRT 114 (617)
T ss_pred CCCCCHHHHHHHhhccCCCCCCChhHhhccccCCcchhHHHhhhhc-----eEEEEEEec
Confidence 999999999999998875432210 1223357777655544 356666654
No 154
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=96.17 E-value=0.05 Score=55.80 Aligned_cols=94 Identities=20% Similarity=0.239 Sum_probs=62.8
Q ss_pred eCHHHHHHHHHHHHhhHhhccCC-----CeEEEEeeccccCCCCCCCcCCcccccccchhhhhhhhhhcccccccCCCce
Q 001044 607 GDPGRVFQIFSNLINNSIKFTSS-----GHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKL 681 (1177)
Q Consensus 607 gD~~rL~QIL~NLL~NAIKfT~~-----G~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (1177)
-|-.+++-++.-++.||++|..+ |.|.|..... ..
T Consensus 36 ~~~~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~~----------------------------------------~~ 75 (146)
T COG2172 36 VDIADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSLD----------------------------------------DG 75 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEEc----------------------------------------CC
Confidence 36778999999999999999865 6777654321 12
Q ss_pred EEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHHHHHHHHHHcCCEEEEEEeCCCceEE
Q 001044 682 ALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLM 750 (1177)
Q Consensus 682 ~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~IVe~~GG~I~v~S~~g~GT~f 750 (1177)
.+.+.|.|.|+||.+ .+..+.+.+... ..-..-|+||.+.++++. ++.+++..+.+.++
T Consensus 76 ~~~i~i~D~G~~~~~--~~~~~~~~~~~~----~~~~~~G~Gl~l~~~~~D----~~~~~~~~~~~~~~ 134 (146)
T COG2172 76 KLEIRIWDQGPGIED--LEESLGPGDTTA----EGLQEGGLGLFLAKRLMD----EFSYERSEDGRNRL 134 (146)
T ss_pred eEEEEEEeCCCCCCC--HHHhcCCCCCCC----cccccccccHHHHhhhhe----eEEEEeccCCceEE
Confidence 378999999987744 444555542211 111233899999999875 57788666654343
No 155
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=95.05 E-value=0.41 Score=48.67 Aligned_cols=118 Identities=13% Similarity=0.103 Sum_probs=86.7
Q ss_pred CcEEEEE----ecChHHHHHHHHHHhhcCCEEEEEcC---HHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001044 1021 GLRILLA----EDTPLIQIVACKILEKVGATVSVVPD---GLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1093 (1177)
Q Consensus 1021 g~~ILIV----dD~~~~~~~l~~~L~~~G~~v~~a~n---G~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIl 1093 (1177)
+.+||+. |.+..-..++..+|+..||+|+.... .++.++.+.+ ..+|+|.
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~-----------------------~~~d~V~ 59 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIE-----------------------TDADAIL 59 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-----------------------cCCCEEE
Confidence 4588888 88888899999999999999998653 4555555542 4799999
Q ss_pred EeCCCCCCC--HHHHHHHHHhcccccCCCCcceEEEecCC------CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHh
Q 001044 1094 MDCQMPKMD--GYEATIEIRKSESEHGARNIPIVALTAHA------MNADEKKCLGVGMNAYLTKPIDSERMVSTILRLT 1165 (1177)
Q Consensus 1094 mDi~MP~md--G~e~~r~IR~~~~~~~~~~ipIIalTa~~------~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~ 1165 (1177)
+-+.|+... --++.+++|+.. .++++|++ -+.. ..++..++.+.|+|.+....-+.++....|++.+
T Consensus 60 lS~~~~~~~~~~~~~~~~L~~~~----~~~~~i~v-GG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~~ 134 (137)
T PRK02261 60 VSSLYGHGEIDCRGLREKCIEAG----LGDILLYV-GGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKDL 134 (137)
T ss_pred EcCccccCHHHHHHHHHHHHhcC----CCCCeEEE-ECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHh
Confidence 999887543 245556666432 23455443 3332 3556678999999999999999999999998876
Q ss_pred h
Q 001044 1166 K 1166 (1177)
Q Consensus 1166 ~ 1166 (1177)
+
T Consensus 135 ~ 135 (137)
T PRK02261 135 N 135 (137)
T ss_pred c
Confidence 4
No 156
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=94.94 E-value=0.59 Score=46.41 Aligned_cols=107 Identities=18% Similarity=0.072 Sum_probs=75.4
Q ss_pred ecChHHHHHHHHHHhhcCCEEEEEcC---HHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCH-
Q 001044 1028 EDTPLIQIVACKILEKVGATVSVVPD---GLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDG- 1103 (1177)
Q Consensus 1028 dD~~~~~~~l~~~L~~~G~~v~~a~n---G~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~mdG- 1103 (1177)
|.+..=...+..+|+..||+|....- .++.++.+.+ ..+|+|.+-..|+..-.
T Consensus 10 d~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~-----------------------~~~d~V~iS~~~~~~~~~ 66 (122)
T cd02071 10 DGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQ-----------------------EDVDVIGLSSLSGGHMTL 66 (122)
T ss_pred ChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-----------------------cCCCEEEEcccchhhHHH
Confidence 66666677788899999999987543 5566666653 47999999988864332
Q ss_pred -HHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHH
Q 001044 1104 -YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTIL 1162 (1177)
Q Consensus 1104 -~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~ 1162 (1177)
-++++++|+. +...++ |++-+....++..+..++|+|+|+..--+.++....|+
T Consensus 67 ~~~~~~~L~~~----~~~~i~-i~~GG~~~~~~~~~~~~~G~d~~~~~~~~~~~~~~~~~ 121 (122)
T cd02071 67 FPEVIELLREL----GAGDIL-VVGGGIIPPEDYELLKEMGVAEIFGPGTSIEEIIDKIR 121 (122)
T ss_pred HHHHHHHHHhc----CCCCCE-EEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHh
Confidence 3344555543 122344 55555566777888999999999999888888877654
No 157
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=94.64 E-value=0.018 Score=58.35 Aligned_cols=67 Identities=21% Similarity=0.392 Sum_probs=40.7
Q ss_pred EEEEEeCCCCCChhhHhhhhcccccCCCC--CCCCCCccchh--HHHHHHHHHHcCCEEEEEEeCC-CceEEEEEEe
Q 001044 684 CFEVDDTGCGIDQSKWETVFESFEQGDPS--TTRKHGGTGLG--LSIVRTLVNKMGGEIKVVKKNS-PGTLMQLYLL 755 (1177)
Q Consensus 684 ~i~V~DtG~GI~~e~l~~IFe~F~q~d~s--~~~~~~GtGLG--LaIvk~IVe~~GG~I~v~S~~g-~GT~f~~~Lp 755 (1177)
.|.|.|+|.||+.+++.++|...+..... .....|-.|+| +|+. .++..+.|.|... ....+++...
T Consensus 35 ~i~I~DnG~Gm~~~~l~~~~~~g~s~k~~~~~~~~~G~~G~G~k~A~~-----~~~~~~~v~S~~~~~~~~~~~~~~ 106 (137)
T PF13589_consen 35 YIVIEDNGEGMSREDLESFFRIGRSSKKSEKDRQSIGRFGIGLKLAIF-----SLGDRVEVISKTNGESFTYTIDYD 106 (137)
T ss_dssp EEEEEESSS---HHHHHHHTTCHHTHHHHHHHGGGGGGGTSGCGGGGG-----GTEEEEEEEEESTTSSSEEEEEEE
T ss_pred EEEEEECCcCCCHHHHHHhccccCCCCCchhhhhcCCCcceEHHHHHH-----HhcCEEEEEEEECCCCcEEEEEEe
Confidence 48899999999999999977654432210 12234567888 4443 4678899999864 3344454443
No 158
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=93.50 E-value=2.5 Score=42.70 Aligned_cols=112 Identities=12% Similarity=0.067 Sum_probs=74.7
Q ss_pred ecChHHHHHHHHHHhhcCCEEEEEc---CHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHH
Q 001044 1028 EDTPLIQIVACKILEKVGATVSVVP---DGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGY 1104 (1177)
Q Consensus 1028 dD~~~~~~~l~~~L~~~G~~v~~a~---nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~mdG~ 1104 (1177)
|-+..=..++..+|+..||+|.-.. +.++.++...+ ..+|+|.+-..|... .
T Consensus 13 D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e-----------------------~~adii~iSsl~~~~--~ 67 (132)
T TIGR00640 13 DGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVE-----------------------ADVHVVGVSSLAGGH--L 67 (132)
T ss_pred CccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHH-----------------------cCCCEEEEcCchhhh--H
Confidence 4455556788889999999998643 46677777653 479999987666322 2
Q ss_pred HHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHh
Q 001044 1105 EATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLT 1165 (1177)
Q Consensus 1105 e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~ 1165 (1177)
+.++.+.+.-...+..+++|+ +-+..-.++..+..++|+|+|+..=-+..+.++.+.+.+
T Consensus 68 ~~~~~~~~~L~~~g~~~i~vi-vGG~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~~~ 127 (132)
T TIGR00640 68 TLVPALRKELDKLGRPDILVV-VGGVIPPQDFDELKEMGVAEIFGPGTPIPESAIFLLKKL 127 (132)
T ss_pred HHHHHHHHHHHhcCCCCCEEE-EeCCCChHhHHHHHHCCCCEEECCCCCHHHHHHHHHHHH
Confidence 333333332112122345544 455555667888999999999998889888888887754
No 159
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=91.71 E-value=0.33 Score=61.43 Aligned_cols=83 Identities=23% Similarity=0.370 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHHHhhHhhccCCC---eEEEEeeccccCCCCCCCcCCcccccccchhhhhhhhhhcccccccCCCceEEE
Q 001044 608 DPGRVFQIFSNLINNSIKFTSSG---HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALC 684 (1177)
Q Consensus 608 D~~rL~QIL~NLL~NAIKfT~~G---~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 684 (1177)
+...|..++.-||+||+.....| .|.|.+. .++ .
T Consensus 34 ~~~gl~~lv~EivdNaiDe~~ag~a~~I~V~i~---------------------------------------~dg----~ 70 (631)
T PRK05559 34 DTRGLHHLVQEVIDNSVDEALAGHGKRIEVTLH---------------------------------------ADG----S 70 (631)
T ss_pred CCchhhhhhhhhhccccchhhcCCCCEEEEEEe---------------------------------------CCC----c
Confidence 56789999999999999875444 3444321 111 4
Q ss_pred EEEEeCCCCCChhhHhh--------hhcccccCCCC----CCCCCCccchhHHHHHHHHHH
Q 001044 685 FEVDDTGCGIDQSKWET--------VFESFEQGDPS----TTRKHGGTGLGLSIVRTLVNK 733 (1177)
Q Consensus 685 i~V~DtG~GI~~e~l~~--------IFe~F~q~d~s----~~~~~~GtGLGLaIvk~IVe~ 733 (1177)
|+|.|+|+|||.+..+. +|....-+..- .....|=.|.||+.|..+-+.
T Consensus 71 I~V~DnGrGIP~~~~~~~~~~~~E~v~t~lhagsKf~~~~yk~SgGl~GvGls~vNalS~~ 131 (631)
T PRK05559 71 VSVRDNGRGIPVGIHPEEGKSGVEVILTKLHAGGKFSNKAYKFSGGLHGVGVSVVNALSSR 131 (631)
T ss_pred EEEEEcCCCCCcccccccCCcchheeeeeccccCccCCccccccCcccccchhhhhhheee
Confidence 88999999999998888 88764322211 111123379999999888543
No 160
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=91.54 E-value=2.1 Score=41.97 Aligned_cols=95 Identities=19% Similarity=0.197 Sum_probs=63.9
Q ss_pred ecChHHHHHHHHHHhhcCCEEEEEc---CHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC--C
Q 001044 1028 EDTPLIQIVACKILEKVGATVSVVP---DGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM--D 1102 (1177)
Q Consensus 1028 dD~~~~~~~l~~~L~~~G~~v~~a~---nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~m--d 1102 (1177)
|.+..-...+..+|+..||+|.... ..++.++.+.+ ..||+|.+-+.|... +
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~-----------------------~~pdvV~iS~~~~~~~~~ 66 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKE-----------------------EDADAIGLSGLLTTHMTL 66 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-----------------------cCCCEEEEeccccccHHH
Confidence 6666777888999999999997643 34445555542 479999999876543 3
Q ss_pred HHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEEC
Q 001044 1103 GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1150 (1177)
Q Consensus 1103 G~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~K 1150 (1177)
..++.+.+|+..+ .+++ |++-+.........+.+.|+|.|+..
T Consensus 67 ~~~~i~~l~~~~~----~~~~-i~vGG~~~~~~~~~~~~~G~D~~~~~ 109 (119)
T cd02067 67 MKEVIEELKEAGL----DDIP-VLVGGAIVTRDFKFLKEIGVDAYFGP 109 (119)
T ss_pred HHHHHHHHHHcCC----CCCe-EEEECCCCChhHHHHHHcCCeEEECC
Confidence 4566677776421 1355 44555555555567889999888864
No 161
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=90.22 E-value=1 Score=43.88 Aligned_cols=113 Identities=23% Similarity=0.319 Sum_probs=80.8
Q ss_pred ccCCcEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCC
Q 001044 1018 ILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ 1097 (1177)
Q Consensus 1018 ~~~g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~ 1097 (1177)
.+.|++.+.||.|.........+|..-+.+|+.-... ..+ ....||++|+.+-
T Consensus 8 ~L~gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t~----~~l-----------------------p~~hYD~~Ll~va 60 (140)
T COG4999 8 CLAGKRLAYIEPNSTAAQCTLDILSETPLEVTYRPTF----SAL-----------------------PPAHYDMMLLGVA 60 (140)
T ss_pred hhccceeEEecCccHHHHHHHHHHhcCCceEEecccc----ccc-----------------------Chhhhceeeeccc
Confidence 4678999999999999999999999999988864432 222 1246999999988
Q ss_pred CCCCCHHHHH--HHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHH
Q 001044 1098 MPKMDGYEAT--IEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTIL 1162 (1177)
Q Consensus 1098 MP~mdG~e~~--r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~ 1162 (1177)
.+--+-..+- +-.|... ..+--|+++-.++.. ..++..+-|+-++|.||++...|+..+.
T Consensus 61 vtfr~n~tm~~~~l~~Al~----mtd~vilalPs~~qv-~AeqLkQ~g~~~CllKPls~~rLlptll 122 (140)
T COG4999 61 VTFRENLTMQHERLAKALS----MTDFVILALPSHAQV-NAEQLKQDGAGACLLKPLSSTRLLPTLL 122 (140)
T ss_pred ccccCCchHHHHHHHHHHh----hhcceEEecCcHHHH-hHHHHhhcchHhHhhCcchhhhhHHHHH
Confidence 7765543322 1112211 234568888776654 4567789999999999999999988553
No 162
>PRK05218 heat shock protein 90; Provisional
Probab=90.09 E-value=0.78 Score=57.97 Aligned_cols=57 Identities=14% Similarity=0.338 Sum_probs=35.5
Q ss_pred EEEEEeCCCCCChhhHhhhhcccccC-----------C-CCCCCCCCccchhHHHHHHHHHHcCCEEEEEEeC
Q 001044 684 CFEVDDTGCGIDQSKWETVFESFEQG-----------D-PSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKN 744 (1177)
Q Consensus 684 ~i~V~DtG~GI~~e~l~~IFe~F~q~-----------d-~s~~~~~~GtGLGLaIvk~IVe~~GG~I~v~S~~ 744 (1177)
.|+|.|||+||+++++..-|.+.-.. + .....-.|-.|+|+.=|- +.+-++.|.|..
T Consensus 74 ~i~I~DnG~GMt~eel~~~l~~ia~Sg~~~f~~k~~~~~~~~~~~iG~fGiGf~S~f----~va~~v~V~Sr~ 142 (613)
T PRK05218 74 TLTISDNGIGMTREEVIENLGTIAKSGTKEFLEKLKGDQKKDSQLIGQFGVGFYSAF----MVADKVTVITRS 142 (613)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhccccchhHHHHhhcccccccccccccCcCchhhh----hccCEEEEEEcC
Confidence 38999999999999998866433211 0 001122356899985332 234567777764
No 163
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=89.18 E-value=0.68 Score=58.99 Aligned_cols=82 Identities=23% Similarity=0.364 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHhhHhhccCCC---eEEEEeeccccCCCCCCCcCCcccccccchhhhhhhhhhcccccccCCCceEEE
Q 001044 608 DPGRVFQIFSNLINNSIKFTSSG---HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALC 684 (1177)
Q Consensus 608 D~~rL~QIL~NLL~NAIKfT~~G---~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 684 (1177)
|+.-|.+++.-||+||+.-...| .|.|.+. .++ .
T Consensus 27 ~~~gl~~vv~Elv~NaiDe~~ag~a~~I~V~i~---------------------------------------~~g----~ 63 (654)
T TIGR01059 27 GETGLHHLVYEVVDNSIDEAMAGYCDTINVTIN---------------------------------------DDG----S 63 (654)
T ss_pred CcchHHhhhHHhhhccccccccCCCCEEEEEEe---------------------------------------CCC----c
Confidence 55678999999999999843334 4444321 111 2
Q ss_pred EEEEeCCCCCChhhHh--------hhhcccccCCC---CCC-CCCCccchhHHHHHHHHH
Q 001044 685 FEVDDTGCGIDQSKWE--------TVFESFEQGDP---STT-RKHGGTGLGLSIVRTLVN 732 (1177)
Q Consensus 685 i~V~DtG~GI~~e~l~--------~IFe~F~q~d~---s~~-~~~~GtGLGLaIvk~IVe 732 (1177)
|+|.|+|+|||.+..+ -+|.-..-+.. ... ...|-.|.||+.+..+-+
T Consensus 64 I~V~DnG~GIp~~~h~~~ki~~~e~i~~~l~ag~kf~~~~~k~s~G~~G~gl~~inalS~ 123 (654)
T TIGR01059 64 VTVEDNGRGIPVDIHPEEGISAVEVVLTVLHAGGKFDKDSYKVSGGLHGVGVSVVNALSE 123 (654)
T ss_pred EEEEEeCCCcCccccCcCCCCchHHheeeecccCccCCCcceecCCccchhHHHHHHhcC
Confidence 8999999999987432 24433211111 111 122347999999988876
No 164
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=89.01 E-value=2 Score=42.16 Aligned_cols=103 Identities=15% Similarity=0.129 Sum_probs=73.8
Q ss_pred HHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC--CHHHHHHHHHh
Q 001044 1035 IVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM--DGYEATIEIRK 1112 (1177)
Q Consensus 1035 ~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~m--dG~e~~r~IR~ 1112 (1177)
..+...|++.|++|..+.+..+|+..++. ...++.|++|+. +.. ...+++++||+
T Consensus 7 ~~l~~~L~~~~~~vv~~~~~dd~~~~i~~----------------------~~~i~avvi~~d-~~~~~~~~~ll~~i~~ 63 (115)
T PF03709_consen 7 RELAEALEQRGREVVDADSTDDALAIIES----------------------FTDIAAVVISWD-GEEEDEAQELLDKIRE 63 (115)
T ss_dssp HHHHHHHHHTTTEEEEESSHHHHHHHHHC----------------------TTTEEEEEEECH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEeCChHHHHHHHHh----------------------CCCeeEEEEEcc-cccchhHHHHHHHHHH
Confidence 34667788899999999999999999973 357899999987 221 23578888887
Q ss_pred cccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCH-HHHHHHHHHHh
Q 001044 1113 SESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDS-ERMVSTILRLT 1165 (1177)
Q Consensus 1113 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~-~~L~~~I~~l~ 1165 (1177)
.. ..+||.+++.....++.-...-.-.++|+...-+- +....+|.+..
T Consensus 64 ~~-----~~iPVFl~~~~~~~~~l~~~~l~~v~~~i~l~~~t~~fia~rI~~Aa 112 (115)
T PF03709_consen 64 RN-----FGIPVFLLAERDTTEDLPAEVLGEVDGFIWLFEDTAEFIARRIEAAA 112 (115)
T ss_dssp HS-----TT-EEEEEESCCHHHCCCHHHHCCESEEEETTTTTHHHHHHHHHHHH
T ss_pred hC-----CCCCEEEEecCCCcccCCHHHHhhccEEEEecCCCHHHHHHHHHHHH
Confidence 53 46999999987755555455556689999987754 44445555443
No 165
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=88.99 E-value=0.53 Score=59.49 Aligned_cols=50 Identities=26% Similarity=0.387 Sum_probs=33.3
Q ss_pred EEEEEeCCCCCChhh--------Hhhhh-cccccCC--CCCCCC-CCccchhHHHHHHHHHH
Q 001044 684 CFEVDDTGCGIDQSK--------WETVF-ESFEQGD--PSTTRK-HGGTGLGLSIVRTLVNK 733 (1177)
Q Consensus 684 ~i~V~DtG~GI~~e~--------l~~IF-e~F~q~d--~s~~~~-~~GtGLGLaIvk~IVe~ 733 (1177)
.|+|.|+|.|||.+. ++-+| .+...++ ....+. .|=.|.||+.+..+-+.
T Consensus 63 ~I~V~DnGrGIp~~~h~~~g~~~~e~v~t~lhagsK~~~~~~~~SgG~~GvGls~vnalS~~ 124 (625)
T TIGR01055 63 SIEVFDNGRGMPVDIHPKEGVSAVEVILTTLHAGGKFSNKNYHFSGGLHGVGISVVNALSKR 124 (625)
T ss_pred eEEEEecCCccCcccccccCCcHHHHhhhcccccCCCCCCcceecCCCcchhHHHHHHhcCe
Confidence 389999999999988 77777 3332111 111112 23379999999988873
No 166
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=88.04 E-value=1.7 Score=50.57 Aligned_cols=85 Identities=24% Similarity=0.240 Sum_probs=59.1
Q ss_pred CCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcce
Q 001044 1045 GATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPI 1124 (1177)
Q Consensus 1045 G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~mdG~e~~r~IR~~~~~~~~~~ipI 1124 (1177)
|.++..+.+..++-..+. .-.+|++|..| -. ..++...+ ++..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~-------------------------~~~~v~~~~~~-----~~--~~~~~~~p----~~~~v 44 (322)
T TIGR03815 1 GVELDVAPDPEAARRAWA-------------------------RAPLVLVDADM-----AE--ACAAAGLP----RRRRV 44 (322)
T ss_pred CCceEEccCchhhhhccc-------------------------cCCeEEECchh-----hh--HHHhccCC----CCCCE
Confidence 456677777666655553 36789999765 11 22333222 22346
Q ss_pred EEEec-CCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHh
Q 001044 1125 VALTA-HAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLT 1165 (1177)
Q Consensus 1125 IalTa-~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~ 1165 (1177)
|++++ ..+.+...+++.+|+.+||.+|++..+|.+.+.++.
T Consensus 45 v~v~~~~~~~~~~~~a~~~Ga~~~l~~P~~~~~l~~~l~~~~ 86 (322)
T TIGR03815 45 VLVGGGEPGGALWRAAAAVGAEHVAVLPEAEGWLVELLADLD 86 (322)
T ss_pred EEEeCCCCCHHHHHHHHHhChhheeeCCCCHHHHHHHHHhhc
Confidence 65555 456778889999999999999999999999998874
No 167
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=87.73 E-value=0.98 Score=57.31 Aligned_cols=82 Identities=26% Similarity=0.391 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHHHhhHhhccCCC---eEEEEeeccccCCCCCCCcCCcccccccchhhhhhhhhhcccccccCCCceEEE
Q 001044 608 DPGRVFQIFSNLINNSIKFTSSG---HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALC 684 (1177)
Q Consensus 608 D~~rL~QIL~NLL~NAIKfT~~G---~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 684 (1177)
|+.-|.+++.-||+||+.-...| .|.|.+. .++ .
T Consensus 34 ~~~gl~~~v~ElvdNaiDe~~ag~a~~I~V~i~---------------------------------------~~g----~ 70 (638)
T PRK05644 34 GERGLHHLVYEIVDNSIDEALAGYCDHIEVTIN---------------------------------------EDG----S 70 (638)
T ss_pred ChhhHHhhhHHhhhcccccccCCCCCEEEEEEe---------------------------------------CCC----c
Confidence 56678999999999999844344 4444321 111 4
Q ss_pred EEEEeCCCCCChhhHh--------hhhcccccCC---CCCCC-CCCccchhHHHHHHHHH
Q 001044 685 FEVDDTGCGIDQSKWE--------TVFESFEQGD---PSTTR-KHGGTGLGLSIVRTLVN 732 (1177)
Q Consensus 685 i~V~DtG~GI~~e~l~--------~IFe~F~q~d---~s~~~-~~~GtGLGLaIvk~IVe 732 (1177)
|+|.|+|+|||.+..+ -||.-..-+. ....+ ..|-.|.||+.+..+-+
T Consensus 71 I~V~DnG~GIp~~~h~~~ki~~~e~i~~~lhag~kfd~~~yk~s~G~~G~Gls~vnalS~ 130 (638)
T PRK05644 71 ITVTDNGRGIPVDIHPKTGKPAVEVVLTVLHAGGKFGGGGYKVSGGLHGVGVSVVNALST 130 (638)
T ss_pred EEEEEeCccccCCccCCCCCCchHHheeeecccCccCCCcccccCCccccchhhhhheec
Confidence 8999999999997433 2443331111 11111 22347999999988877
No 168
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=87.39 E-value=9.4 Score=35.99 Aligned_cols=109 Identities=17% Similarity=0.213 Sum_probs=72.0
Q ss_pred EEeecChhHHHHHHHHHHhccc-eeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCceEE
Q 001044 776 VLATVGSMERMIISQWLRKKKV-STLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVV 854 (1177)
Q Consensus 776 ~~~~~~~~~r~~~~~~l~~~g~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v 854 (1177)
++.+.....+..+..++...|+ ....+.+..++...+.. .+..++
T Consensus 2 livd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~----------------------------------~~~d~i 47 (112)
T PF00072_consen 2 LIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKK----------------------------------HPPDLI 47 (112)
T ss_dssp EEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHH----------------------------------STESEE
T ss_pred EEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcc----------------------------------cCceEE
Confidence 4567777788888999998888 66666655554443322 235789
Q ss_pred EEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHH
Q 001044 855 VIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLL 922 (1177)
Q Consensus 855 ~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l 922 (1177)
++|..+.+.++..+-+.++.. .....+..+- ............+.|...++.||+....+.+.+
T Consensus 48 iid~~~~~~~~~~~~~~i~~~---~~~~~ii~~t-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i 111 (112)
T PF00072_consen 48 IIDLELPDGDGLELLEQIRQI---NPSIPIIVVT-DEDDSDEVQEALRAGADDYLSKPFSPEELRAAI 111 (112)
T ss_dssp EEESSSSSSBHHHHHHHHHHH---TTTSEEEEEE-SSTSHHHHHHHHHTTESEEEESSSSHHHHHHHH
T ss_pred EEEeeeccccccccccccccc---cccccEEEec-CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhh
Confidence 999999997765444444322 2333333333 333445556666889999999999998887764
No 169
>PRK14083 HSP90 family protein; Provisional
Probab=86.66 E-value=0.76 Score=57.69 Aligned_cols=46 Identities=17% Similarity=0.299 Sum_probs=28.9
Q ss_pred EEEEEeCCCCCChhhHhhhhcccc----cCC---CCCCCCCCccchhHHHHHH
Q 001044 684 CFEVDDTGCGIDQSKWETVFESFE----QGD---PSTTRKHGGTGLGLSIVRT 729 (1177)
Q Consensus 684 ~i~V~DtG~GI~~e~l~~IFe~F~----q~d---~s~~~~~~GtGLGLaIvk~ 729 (1177)
.|+|.|||+||+++++.+.|-..- +.. .......|..|+|+.=|-.
T Consensus 64 ~l~I~DnGiGmt~eel~~~l~~ig~S~k~~~~~~~~~~~~IG~FGIGf~S~F~ 116 (601)
T PRK14083 64 TLIVEDNGIGLTEEEVHEFLATIGRSSKRDENLGFARNDFLGQFGIGLLSCFL 116 (601)
T ss_pred EEEEEeCCCCCCHHHHHHHHhhhccchhhhhhhcccccccccccccceEEEEE
Confidence 479999999999999988762221 110 0111223678898765433
No 170
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.62 E-value=1.5 Score=44.08 Aligned_cols=24 Identities=33% Similarity=0.636 Sum_probs=20.3
Q ss_pred HHHHHHHhhHhhccCCCeEEEEee
Q 001044 614 QIFSNLINNSIKFTSSGHIIIRGW 637 (1177)
Q Consensus 614 QIL~NLL~NAIKfT~~G~v~v~~~ 637 (1177)
-+..-||.||+||...|.|+|.+.
T Consensus 66 Yl~NELiENAVKfra~geIvieas 89 (184)
T COG5381 66 YLANELIENAVKFRATGEIVIEAS 89 (184)
T ss_pred HHHHHHHHhhhcccCCCcEEEEEE
Confidence 467789999999999999888753
No 171
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=84.94 E-value=16 Score=37.05 Aligned_cols=109 Identities=12% Similarity=0.122 Sum_probs=72.9
Q ss_pred ChHHHHHHHHHHhhcCCEEEEE---cCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCC--HH
Q 001044 1030 TPLIQIVACKILEKVGATVSVV---PDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMD--GY 1104 (1177)
Q Consensus 1030 ~~~~~~~l~~~L~~~G~~v~~a---~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~md--G~ 1104 (1177)
+..-..++..+|+..||+|.-. ...++.+++..+ +.+|+|-+-..|-..- --
T Consensus 14 HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~-----------------------~~adiVglS~l~~~~~~~~~ 70 (134)
T TIGR01501 14 HAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIE-----------------------TKADAILVSSLYGHGEIDCK 70 (134)
T ss_pred hhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-----------------------cCCCEEEEecccccCHHHHH
Confidence 4445677889999999999864 455666666643 4799999988774322 22
Q ss_pred HHHHHHHhcccccCCCCcceEEEecCC--CHHH----HHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001044 1105 EATIEIRKSESEHGARNIPIVALTAHA--MNAD----EKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1166 (1177)
Q Consensus 1105 e~~r~IR~~~~~~~~~~ipIIalTa~~--~~~~----~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~ 1166 (1177)
++.+++|+. +...++ |++-+.. ..++ ..+..+.|++......-.++++.+.|++.++
T Consensus 71 ~~~~~l~~~----gl~~~~-vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~~~~ 133 (134)
T TIGR01501 71 GLRQKCDEA----GLEGIL-LYVGGNLVVGKQDFPDVEKRFKEMGFDRVFAPGTPPEVVIADLKKDLN 133 (134)
T ss_pred HHHHHHHHC----CCCCCE-EEecCCcCcChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhc
Confidence 344455542 233444 5555531 1222 4468899999999988899999998887654
No 172
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=84.25 E-value=0.81 Score=58.25 Aligned_cols=20 Identities=20% Similarity=0.469 Sum_probs=16.7
Q ss_pred EEEEEeCCCCCChhhHhhhh
Q 001044 684 CFEVDDTGCGIDQSKWETVF 703 (1177)
Q Consensus 684 ~i~V~DtG~GI~~e~l~~IF 703 (1177)
.++|.|||+||+++++.+-+
T Consensus 73 ~L~I~DnGiGMt~edl~~~L 92 (701)
T PTZ00272 73 TLTVEDNGIGMTKADLVNNL 92 (701)
T ss_pred EEEEEECCCCCCHHHHHHHh
Confidence 57899999999999876544
No 173
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=83.48 E-value=28 Score=35.67 Aligned_cols=120 Identities=18% Similarity=0.134 Sum_probs=84.9
Q ss_pred CcEEEEE----ecChHHHHHHHHHHhhcCCEEEE---EcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001044 1021 GLRILLA----EDTPLIQIVACKILEKVGATVSV---VPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1093 (1177)
Q Consensus 1021 g~~ILIV----dD~~~~~~~l~~~L~~~G~~v~~---a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIl 1093 (1177)
..|||++ |-+..=.+++.+.|...||+|+. ....+|++...-+ +..|+|.
T Consensus 12 rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~-----------------------~dv~vIg 68 (143)
T COG2185 12 RPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVE-----------------------EDVDVIG 68 (143)
T ss_pred CceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHh-----------------------cCCCEEE
Confidence 3466664 67777789999999999999986 5678888876632 3688887
Q ss_pred EeCCCCCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001044 1094 MDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1166 (1177)
Q Consensus 1094 mDi~MP~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~ 1166 (1177)
+..- .-...+++..+++...+.+..++. +++-+.-..++..+..+.|++.++.--.+..+....+...+.
T Consensus 69 vSsl--~g~h~~l~~~lve~lre~G~~~i~-v~~GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~~l~ 138 (143)
T COG2185 69 VSSL--DGGHLTLVPGLVEALREAGVEDIL-VVVGGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLLTRLG 138 (143)
T ss_pred EEec--cchHHHHHHHHHHHHHHhCCcceE-EeecCccCchhHHHHHHhCcceeeCCCCCHHHHHHHHHHHHH
Confidence 6542 223356666666655454545555 456677777888888899999999877777776666655543
No 174
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=83.45 E-value=1.5 Score=55.72 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=23.8
Q ss_pred EEEEEeCCCCCChhhHhhhhcccccCC
Q 001044 684 CFEVDDTGCGIDQSKWETVFESFEQGD 710 (1177)
Q Consensus 684 ~i~V~DtG~GI~~e~l~~IFe~F~q~d 710 (1177)
.|.|.|||+||++++++-.+.++...+
T Consensus 54 ~I~V~DNG~Gi~~~Dl~la~~rHaTSK 80 (638)
T COG0323 54 LIRVRDNGSGIDKEDLPLALLRHATSK 80 (638)
T ss_pred EEEEEECCCCCCHHHHHHHHhhhcccc
Confidence 389999999999999999999987543
No 175
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=82.87 E-value=9.3 Score=37.20 Aligned_cols=93 Identities=27% Similarity=0.351 Sum_probs=60.3
Q ss_pred ChHHHHHHHHHHhhcCCEEEEE---cCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeC-CCCCCC-HH
Q 001044 1030 TPLIQIVACKILEKVGATVSVV---PDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDC-QMPKMD-GY 1104 (1177)
Q Consensus 1030 ~~~~~~~l~~~L~~~G~~v~~a---~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi-~MP~md-G~ 1104 (1177)
.+.-...+..+|++.|++|... .+.++..+.+.+ ..||+|.+.+ ..+... ..
T Consensus 13 ~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~-----------------------~~pd~V~iS~~~~~~~~~~~ 69 (121)
T PF02310_consen 13 HPLGLLYLAAYLRKAGHEVDILDANVPPEELVEALRA-----------------------ERPDVVGISVSMTPNLPEAK 69 (121)
T ss_dssp TSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHH-----------------------TTCSEEEEEESSSTHHHHHH
T ss_pred hhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhc-----------------------CCCcEEEEEccCcCcHHHHH
Confidence 3556778899999999999877 234555555543 3799999999 444443 35
Q ss_pred HHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHH--cCCCEEEECC
Q 001044 1105 EATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG--VGMNAYLTKP 1151 (1177)
Q Consensus 1105 e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~--aG~d~yL~KP 1151 (1177)
++++.+|+.. ++++||+=-.+.+ ..-..+++ .|+|..+.-.
T Consensus 70 ~l~~~~k~~~-----p~~~iv~GG~~~t-~~~~~~l~~~~~~D~vv~Ge 112 (121)
T PF02310_consen 70 RLARAIKERN-----PNIPIVVGGPHAT-ADPEEILREYPGIDYVVRGE 112 (121)
T ss_dssp HHHHHHHTTC-----TTSEEEEEESSSG-HHHHHHHHHHHTSEEEEEET
T ss_pred HHHHHHHhcC-----CCCEEEEECCchh-cChHHHhccCcCcceecCCC
Confidence 6666666542 3466665444443 44455665 7999877654
No 176
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=82.77 E-value=12 Score=41.63 Aligned_cols=56 Identities=16% Similarity=0.182 Sum_probs=43.6
Q ss_pred HHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE-----CCCCHHHHHHHHHHHh
Q 001044 1104 YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT-----KPIDSERMVSTILRLT 1165 (1177)
Q Consensus 1104 ~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~-----KP~~~~~L~~~I~~l~ 1165 (1177)
.++++.|++. ..+|||+=-+-...+|..+|++.|+|+++. |.-++..+..+....+
T Consensus 164 ~~~I~~I~e~------~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~Av 224 (248)
T cd04728 164 PYNLRIIIER------ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAV 224 (248)
T ss_pred HHHHHHHHHh------CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHHHH
Confidence 7888888864 248999988889999999999999999974 6455666666665444
No 177
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=82.34 E-value=29 Score=34.98 Aligned_cols=105 Identities=11% Similarity=0.109 Sum_probs=70.3
Q ss_pred ChHHHHHHHHHHhhcCCEEEEE---cCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC-CH-H
Q 001044 1030 TPLIQIVACKILEKVGATVSVV---PDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM-DG-Y 1104 (1177)
Q Consensus 1030 ~~~~~~~l~~~L~~~G~~v~~a---~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~m-dG-~ 1104 (1177)
+..-..++..+|+..||+|.-. ...++.++...+ +.+|+|.+-..|... .. -
T Consensus 12 HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa~~-----------------------~~adiVglS~L~t~~~~~~~ 68 (128)
T cd02072 12 HAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIE-----------------------TDADAILVSSLYGHGEIDCK 68 (128)
T ss_pred hHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-----------------------cCCCEEEEeccccCCHHHHH
Confidence 4455678889999999999864 445666666543 479999998887543 22 3
Q ss_pred HHHHHHHhcccccCCCCcceEEEecCC--C----HHHHHHHHHcCCCEEEECCCCHHHHHHHHH
Q 001044 1105 EATIEIRKSESEHGARNIPIVALTAHA--M----NADEKKCLGVGMNAYLTKPIDSERMVSTIL 1162 (1177)
Q Consensus 1105 e~~r~IR~~~~~~~~~~ipIIalTa~~--~----~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~ 1162 (1177)
++.+.+|+. +..++||+ +-+.. . .+++.+..++|+|......-+++++...|+
T Consensus 69 ~~~~~l~~~----gl~~v~vi-vGG~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt~~~~i~~~l~ 127 (128)
T cd02072 69 GLREKCDEA----GLKDILLY-VGGNLVVGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIADLK 127 (128)
T ss_pred HHHHHHHHC----CCCCCeEE-EECCCCCChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHh
Confidence 455555543 23455554 44432 1 334567889999999998888888877664
No 178
>PRK00208 thiG thiazole synthase; Reviewed
Probab=82.27 E-value=13 Score=41.44 Aligned_cols=56 Identities=14% Similarity=0.141 Sum_probs=43.3
Q ss_pred HHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE-----CCCCHHHHHHHHHHHh
Q 001044 1104 YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT-----KPIDSERMVSTILRLT 1165 (1177)
Q Consensus 1104 ~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~-----KP~~~~~L~~~I~~l~ 1165 (1177)
.+.++.|++. .++|||+=-+-...+|..+|++.|+|+++. |.-++..+..+....+
T Consensus 164 ~~~i~~i~e~------~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av 224 (250)
T PRK00208 164 PYNLRIIIEQ------ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAV 224 (250)
T ss_pred HHHHHHHHHh------cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHH
Confidence 6788888864 248999988889999999999999999974 6445666666655443
No 179
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=80.72 E-value=18 Score=40.13 Aligned_cols=116 Identities=13% Similarity=0.117 Sum_probs=80.2
Q ss_pred EEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCceEE
Q 001044 775 VVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVV 854 (1177)
Q Consensus 775 v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v 854 (1177)
+++.++...-+..+...+.+.|..+..+.+.......+ ... ++++
T Consensus 3 ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~----------------------------------~~~-~dlv 47 (229)
T COG0745 3 ILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAA----------------------------------REQ-PDLV 47 (229)
T ss_pred EEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH----------------------------------hcC-CCEE
Confidence 45666777777888889999988777666543332221 112 5789
Q ss_pred EEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001044 855 VIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 928 (1177)
Q Consensus 855 ~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 928 (1177)
++|++++++++..+-..++.. ......+++....+....+..--..|.+-++.||+....+..-+...++.
T Consensus 48 iLD~~lP~~dG~~~~~~iR~~---~~~~~PIi~Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR 118 (229)
T COG0745 48 LLDLMLPDLDGLELCRRLRAK---KGSGPPIIVLTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRR 118 (229)
T ss_pred EEECCCCCCCHHHHHHHHHhh---cCCCCcEEEEECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCc
Confidence 999999999985544333321 22333456666666666677777789999999999999998888877654
No 180
>PTZ00130 heat shock protein 90; Provisional
Probab=78.89 E-value=2.6 Score=54.10 Aligned_cols=45 Identities=18% Similarity=0.271 Sum_probs=27.5
Q ss_pred EEEEEeCCCCCChhhHhhhhc--------ccc---cCCCCCCCCCCccchhHHHHH
Q 001044 684 CFEVDDTGCGIDQSKWETVFE--------SFE---QGDPSTTRKHGGTGLGLSIVR 728 (1177)
Q Consensus 684 ~i~V~DtG~GI~~e~l~~IFe--------~F~---q~d~s~~~~~~GtGLGLaIvk 728 (1177)
.|+|.|||+||+++++..-+- .|. +.......-.|-.|+|++-|-
T Consensus 136 tLtI~DnGIGMT~eEl~~nLgTIA~Sgt~~F~~~l~~~~~~~~lIGQFGVGFYSaF 191 (814)
T PTZ00130 136 ILSITDTGIGMTKEDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAF 191 (814)
T ss_pred EEEEEECCCCCCHHHHHHHhhhhcccccHHHHHHhhccCCCcccccccccchhhee
Confidence 478999999999999764331 121 110111223467899997763
No 181
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=76.31 E-value=20 Score=46.04 Aligned_cols=99 Identities=10% Similarity=0.072 Sum_probs=65.4
Q ss_pred EEEEEecCh-HH-----HHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeC
Q 001044 1023 RILLAEDTP-LI-----QIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDC 1096 (1177)
Q Consensus 1023 ~ILIVdD~~-~~-----~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi 1096 (1177)
+|+||+++. .+ ...+..-|++.|++|..+.+..+++..++. ....+.|++|.
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~ 59 (713)
T PRK15399 2 NIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIEH----------------------NPRICGVIFDW 59 (713)
T ss_pred cEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhc----------------------ccceeEEEEec
Confidence 567776663 22 344566788899999999999999998863 34688999995
Q ss_pred CCCCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECC
Q 001044 1097 QMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKP 1151 (1177)
Q Consensus 1097 ~MP~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP 1151 (1177)
+-. ..++++.||+.. ..+||+++.......+.-...-.-.++|+..-
T Consensus 60 ~~~---~~~~~~~~~~~~-----~~~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (713)
T PRK15399 60 DEY---SLDLCSDINQLN-----EYLPLYAFINTHSTMDVSVQDMRMALWFFEYA 106 (713)
T ss_pred ccc---hHHHHHHHHHhC-----CCCCEEEEcCccccccCChhHhhhcceeeeec
Confidence 332 355888888753 46999999875433332222222345555543
No 182
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=75.11 E-value=39 Score=36.34 Aligned_cols=73 Identities=23% Similarity=0.303 Sum_probs=52.6
Q ss_pred CccEEEEeCCCCCC--------CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE-----CCCCH
Q 001044 1088 RFDLILMDCQMPKM--------DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT-----KPIDS 1154 (1177)
Q Consensus 1088 ~~DLIlmDi~MP~m--------dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~-----KP~~~ 1154 (1177)
..|+|...--.|.. .|++..+++++.. .++||++.-+- +.++..+++++|+|.+.. +.-++
T Consensus 124 gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~v~a~GGI-~~~~i~~~~~~Ga~gv~~gs~i~~~~d~ 197 (212)
T PRK00043 124 GADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAV-----GDIPIVAIGGI-TPENAPEVLEAGADGVAVVSAITGAEDP 197 (212)
T ss_pred CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc-----CCCCEEEECCc-CHHHHHHHHHcCCCEEEEeHHhhcCCCH
Confidence 58999887555543 4688888888642 23899988766 578888999999999985 55566
Q ss_pred HHHHHHHHHHhh
Q 001044 1155 ERMVSTILRLTK 1166 (1177)
Q Consensus 1155 ~~L~~~I~~l~~ 1166 (1177)
.+....+.+.++
T Consensus 198 ~~~~~~l~~~~~ 209 (212)
T PRK00043 198 EAAARALLAAFR 209 (212)
T ss_pred HHHHHHHHHHHh
Confidence 666666655544
No 183
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=75.04 E-value=25 Score=38.08 Aligned_cols=99 Identities=14% Similarity=0.173 Sum_probs=67.3
Q ss_pred cEEEEE----ecChHHHHHHHHHHhhcCCEEEEEc---CHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEE
Q 001044 1022 LRILLA----EDTPLIQIVACKILEKVGATVSVVP---DGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILM 1094 (1177)
Q Consensus 1022 ~~ILIV----dD~~~~~~~l~~~L~~~G~~v~~a~---nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlm 1094 (1177)
.+||+. |-+..=...+..+|+..||+|.-.. ..++.++.+.+ ..||+|.+
T Consensus 83 ~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~-----------------------~~~d~v~l 139 (201)
T cd02070 83 GKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKE-----------------------HKPDILGL 139 (201)
T ss_pred CeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-----------------------cCCCEEEE
Confidence 478887 7777778888999999999998643 34556666643 47999999
Q ss_pred eCCCCCC--CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1095 DCQMPKM--DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1095 Di~MP~m--dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
-+.|+.. +.-++.+.+|+... ..+++|++--+.. ..+ -+-+.|||.|-.
T Consensus 140 S~~~~~~~~~~~~~i~~lr~~~~---~~~~~i~vGG~~~-~~~--~~~~~GaD~~~~ 190 (201)
T cd02070 140 SALMTTTMGGMKEVIEALKEAGL---RDKVKVMVGGAPV-NQE--FADEIGADGYAE 190 (201)
T ss_pred eccccccHHHHHHHHHHHHHCCC---CcCCeEEEECCcC-CHH--HHHHcCCcEEEC
Confidence 9988764 23455666665422 1256666544433 333 466789999975
No 184
>PRK11677 hypothetical protein; Provisional
Probab=74.74 E-value=30 Score=35.09 Aligned_cols=32 Identities=19% Similarity=0.189 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 001044 452 CILVIGCICILILTNGVSKEMKLRAELISHLD 483 (1177)
Q Consensus 452 ~illi~~~~~~~l~~~i~~~~~l~~el~~~l~ 483 (1177)
+.+++|+++.+++.|...+..+...++.++++
T Consensus 8 i~livG~iiG~~~~R~~~~~~~~q~~le~eLe 39 (134)
T PRK11677 8 IGLVVGIIIGAVAMRFGNRKLRQQQALQYELE 39 (134)
T ss_pred HHHHHHHHHHHHHHhhccchhhHHHHHHHHHH
Confidence 34445555555555554444444444444443
No 185
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=73.98 E-value=22 Score=45.72 Aligned_cols=80 Identities=15% Similarity=0.194 Sum_probs=56.5
Q ss_pred EEEEEecCh-HH-----HHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeC
Q 001044 1023 RILLAEDTP-LI-----QIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDC 1096 (1177)
Q Consensus 1023 ~ILIVdD~~-~~-----~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi 1096 (1177)
+||+++++. .+ .+.+..-|++.|++|..+.+..+++..++. ....+.|+.|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~ 59 (714)
T PRK15400 2 NVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIEN----------------------NARLCGVIFDW 59 (714)
T ss_pred cEEEEccccccccccHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhc----------------------ccceeEEEEec
Confidence 466665552 11 345666788899999999999999998863 34688899984
Q ss_pred CCCCCCHHHHHHHHHhcccccCCCCcceEEEecCCC
Q 001044 1097 QMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAM 1132 (1177)
Q Consensus 1097 ~MP~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~ 1132 (1177)
+- . ..++++.||+.. ..+||+++.....
T Consensus 60 ~~--~-~~~~~~~~~~~~-----~~~Pv~~~~~~~~ 87 (714)
T PRK15400 60 DK--Y-NLELCEEISKMN-----ENLPLYAFANTYS 87 (714)
T ss_pred ch--h-hHHHHHHHHHhC-----CCCCEEEEccccc
Confidence 22 1 245888888753 4599999987543
No 186
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=73.96 E-value=4 Score=51.58 Aligned_cols=48 Identities=27% Similarity=0.476 Sum_probs=28.8
Q ss_pred EEEEEeCCCCCChhhHh--------hhhcccccCCC---CCCC-CCCccchhHHHHHHHH
Q 001044 684 CFEVDDTGCGIDQSKWE--------TVFESFEQGDP---STTR-KHGGTGLGLSIVRTLV 731 (1177)
Q Consensus 684 ~i~V~DtG~GI~~e~l~--------~IFe~F~q~d~---s~~~-~~~GtGLGLaIvk~IV 731 (1177)
.|+|.|+|.|||-+..+ -||.....+.. .... ..|-.|.||+.+..+-
T Consensus 34 ~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~kfd~~~~k~s~G~~G~Gls~vnalS 93 (594)
T smart00433 34 SISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGKFDDDAYKVSGGLHGVGASVVNALS 93 (594)
T ss_pred eEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCCCCCCCccccCCcccchHHHHHHhc
Confidence 48999999999976543 33433322111 1111 2234799999988774
No 187
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=73.34 E-value=29 Score=44.87 Aligned_cols=117 Identities=14% Similarity=0.058 Sum_probs=79.7
Q ss_pred cEEEEE----ecChHHHHHHHHHHhhcCCEEEEE---cCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEE
Q 001044 1022 LRILLA----EDTPLIQIVACKILEKVGATVSVV---PDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILM 1094 (1177)
Q Consensus 1022 ~~ILIV----dD~~~~~~~l~~~L~~~G~~v~~a---~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlm 1094 (1177)
.+|+++ |.+..-...+..+|+..||+|..- .+.+++++.+.+ ..+|+|.+
T Consensus 583 pkV~LatlG~d~H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa~~-----------------------~~a~ivvl 639 (714)
T PRK09426 583 PRILVAKMGQDGHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAVE-----------------------NDVHVVGV 639 (714)
T ss_pred ceEEEEecCCcchhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHHHH-----------------------cCCCEEEE
Confidence 355543 344555667888999999999643 346677777653 36899888
Q ss_pred eCCCCCC--CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001044 1095 DCQMPKM--DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1166 (1177)
Q Consensus 1095 Di~MP~m--dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~ 1166 (1177)
...+... ..-++++.+|+.. ..+++|+ +-+..-+++...+.++|+|+|+..=.+..+++..+.+.+.
T Consensus 640 cs~d~~~~e~~~~l~~~Lk~~G----~~~v~vl-~GG~~~~~~~~~l~~aGvD~~i~~g~d~~~~L~~l~~~l~ 708 (714)
T PRK09426 640 SSLAAGHKTLVPALIEALKKLG----REDIMVV-VGGVIPPQDYDFLYEAGVAAIFGPGTVIADAAIDLLELLS 708 (714)
T ss_pred eccchhhHHHHHHHHHHHHhcC----CCCcEEE-EeCCCChhhHHHHHhCCCCEEECCCCCHHHHHHHHHHHHH
Confidence 7665443 2346677777542 1234444 5555445556778899999999999999998888887764
No 188
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=73.25 E-value=30 Score=37.97 Aligned_cols=101 Identities=19% Similarity=0.116 Sum_probs=66.7
Q ss_pred cEEEEE----ecChHHHHHHHHHHhhcCCEEEEEcC---HHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEE
Q 001044 1022 LRILLA----EDTPLIQIVACKILEKVGATVSVVPD---GLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILM 1094 (1177)
Q Consensus 1022 ~~ILIV----dD~~~~~~~l~~~L~~~G~~v~~a~n---G~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlm 1094 (1177)
.+|++. |.+..=..++..+|+..||+|.-... .++.++.+.+ ..||+|.+
T Consensus 89 ~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~-----------------------~~~~~V~l 145 (213)
T cd02069 89 GKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKE-----------------------HKADIIGL 145 (213)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHH-----------------------cCCCEEEE
Confidence 478887 78888888889999999999987643 4555565543 47999999
Q ss_pred eCCCCCC-C-HHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHH---HHHcCCCEEEEC
Q 001044 1095 DCQMPKM-D-GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK---CLGVGMNAYLTK 1150 (1177)
Q Consensus 1095 Di~MP~m-d-G~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~---~l~aG~d~yL~K 1150 (1177)
-+.|+.- . --++.+++|+.. .+++|++--+-...+...+ |-..|+|.|-.=
T Consensus 146 S~~~~~~~~~~~~~i~~L~~~~-----~~~~i~vGG~~~~~~~~~~~~~~~~~gad~y~~d 201 (213)
T cd02069 146 SGLLVPSLDEMVEVAEEMNRRG-----IKIPLLIGGAATSRKHTAVKIAPEYDGPVVYVKD 201 (213)
T ss_pred ccchhccHHHHHHHHHHHHhcC-----CCCeEEEEChhcCHHHHhhhhccccCCCceEecC
Confidence 9998643 2 234555666431 3577665544333333222 345799988653
No 189
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=65.34 E-value=63 Score=35.34 Aligned_cols=56 Identities=23% Similarity=0.313 Sum_probs=41.7
Q ss_pred CccEEEEeCC-------CCCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1088 RFDLILMDCQ-------MPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1088 ~~DLIlmDi~-------MP~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
.+|+|..... .+...+++++++||+.. ++||++..+-.+.++..+++++|+|.++.
T Consensus 139 G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~------~iPvia~GGI~t~~~~~~~l~~GadgV~i 201 (221)
T PRK01130 139 GFDFIGTTLSGYTEETKKPEEPDFALLKELLKAV------GCPVIAEGRINTPEQAKKALELGAHAVVV 201 (221)
T ss_pred CCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhC------CCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 5787754311 12233578889998742 48999988888899999999999999875
No 190
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=64.09 E-value=56 Score=39.95 Aligned_cols=118 Identities=14% Similarity=0.158 Sum_probs=80.8
Q ss_pred EEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCceE
Q 001044 774 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 853 (1177)
Q Consensus 774 ~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 853 (1177)
.+++.++...-|..+.+++...|..+..+....++...+.. .++.+
T Consensus 6 ~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~----------------------------------~~~~l 51 (464)
T COG2204 6 RILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSE----------------------------------SPFDL 51 (464)
T ss_pred CEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhc----------------------------------CCCCE
Confidence 46777788888889999999999888777766655544321 14578
Q ss_pred EEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHhcc
Q 001044 854 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGK 929 (1177)
Q Consensus 854 v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~~ 929 (1177)
++.|+.++++++-.+-+.+. .......+..+-.|. .-+...+..+.|..-++.||+...++...+..+...+
T Consensus 52 vl~Di~mp~~~Gl~ll~~i~---~~~~~~pVI~~Tg~g-~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~ 123 (464)
T COG2204 52 VLLDIRMPGMDGLELLKEIK---SRDPDLPVIVMTGHG-DIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELR 123 (464)
T ss_pred EEEecCCCCCchHHHHHHHH---hhCCCCCEEEEeCCC-CHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHh
Confidence 99999999998754433322 222233333444443 3344445667788889999999999999888876643
No 191
>COG5385 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.91 E-value=1.9e+02 Score=30.26 Aligned_cols=185 Identities=17% Similarity=0.186 Sum_probs=106.3
Q ss_pred HHHHhHHhhhhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHHHHHHH
Q 001044 498 FLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEE 577 (1177)
Q Consensus 498 Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~l~~~~~dL~~li~~ 577 (1177)
+.+.+.||+=.|..+|..-+|+|.+... + .+.+..|+.++..+. +.|.|+|+--|.-----..||-.+. +.
T Consensus 18 LcsRvCHDiISPvgAInnGLeLLdeg~a-d---dDAm~LIrsSArnas----~rLqFaR~AFGAsgSag~~iDtgea-ek 88 (214)
T COG5385 18 LCSRVCHDIISPVGAINNGLELLDEGGA-D---DDAMDLIRSSARNAS----VRLQFARLAFGASGSAGASIDTGEA-EK 88 (214)
T ss_pred HHHHHHhhccCcHHHhhchhhhhccCCc-c---HHHHHHHHHHhhhHH----HHHHHHHHHhcccccccccccchhH-HH
Confidence 4577899999999999999999865432 2 234556777776654 5678999876654333345665543 33
Q ss_pred HHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccCCCeEEEEeeccccCCCCCCCcCCcccccc
Q 001044 578 LVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKF 657 (1177)
Q Consensus 578 vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~~~~~~~~~~~~~ 657 (1177)
+...| .+.+| -++.++.+.. ....++. ..+.||+-=|--.-|.|+..+.. .++.
T Consensus 89 ~A~~~--~a~ek-pe~~W~g~r~-----~~~Kn~v-kllLNl~lia~~aiPrGG~~~vt-le~~---------------- 142 (214)
T COG5385 89 AAQDF--FANEK-PELTWNGPRA-----ILPKNRV-KLLLNLFLIAYGAIPRGGSLVVT-LENP---------------- 142 (214)
T ss_pred HHHHH--HhccC-CcccccCChh-----hcCcchH-HHHHHHHHHHcccCCCCCeeEEE-eecC----------------
Confidence 33322 12333 4555543322 2334444 45678887776667777643321 1111
Q ss_pred cchhhhhhhhhhcccccccCCCceEEEEEEEeCCC--CCChhhHhhhhcccccCCCCCCCCCCccchhHHHHHHHHHHcC
Q 001044 658 GRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGC--GIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMG 735 (1177)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~--GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~IVe~~G 735 (1177)
+.. -+|+|.-.|. -.|++.++-+ .+.+. ...-++.-.-=+..--|++.-|
T Consensus 143 --------------------e~d--~rfsi~akG~m~Rvppk~lel~-----~G~~~-eE~vdahsVQpyYt~lLa~eAg 194 (214)
T COG5385 143 --------------------ETD--ARFSIIAKGRMMRVPPKFLELH-----SGEPP-EEAVDAHSVQPYYTLLLAEEAG 194 (214)
T ss_pred --------------------CcC--ceEEEEecCccccCCHHHHhhh-----cCCCc-cccCCCccccHHHHHHHHHHcC
Confidence 011 2356665665 3466655432 12111 1112344455566777899999
Q ss_pred CEEEEEEeCC
Q 001044 736 GEIKVVKKNS 745 (1177)
Q Consensus 736 G~I~v~S~~g 745 (1177)
++|.|+....
T Consensus 195 m~I~v~~~~e 204 (214)
T COG5385 195 MTISVHATAE 204 (214)
T ss_pred CeEEEEeccc
Confidence 9999987644
No 192
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=63.90 E-value=1.1e+02 Score=34.52 Aligned_cols=104 Identities=18% Similarity=0.107 Sum_probs=64.8
Q ss_pred EEEec-ChHHHHHHHHHHhhcCCEEE-EEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEe---CCCC
Q 001044 1025 LLAED-TPLIQIVACKILEKVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMD---CQMP 1099 (1177)
Q Consensus 1025 LIVdD-~~~~~~~l~~~L~~~G~~v~-~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmD---i~MP 1099 (1177)
|++.+ ++.....+......+|.++. .+.|.+|+..+.+ ..+|+|-.. ..--
T Consensus 139 Li~~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~------------------------~gadiIgin~rdl~~~ 194 (260)
T PRK00278 139 LIVAALDDEQLKELLDYAHSLGLDVLVEVHDEEELERALK------------------------LGAPLIGINNRNLKTF 194 (260)
T ss_pred EEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH------------------------cCCCEEEECCCCcccc
Confidence 44444 33333334444456788754 5788888865553 146766542 1112
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE-----CCCCHHHH
Q 001044 1100 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT-----KPIDSERM 1157 (1177)
Q Consensus 1100 ~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~-----KP~~~~~L 1157 (1177)
.-| ++.+.++.+..+ ...|+|+.++-...++..+++++|+|.++. ||-++.+.
T Consensus 195 ~~d-~~~~~~l~~~~p----~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~~~dp~~~ 252 (260)
T PRK00278 195 EVD-LETTERLAPLIP----SDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMRADDPGAA 252 (260)
T ss_pred cCC-HHHHHHHHHhCC----CCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcCCCCHHHH
Confidence 223 677777765432 136899999999999999999999999764 55454433
No 193
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.90 E-value=87 Score=31.34 Aligned_cols=20 Identities=15% Similarity=0.147 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001044 443 LIILISASVCILVIGCICIL 462 (1177)
Q Consensus 443 l~ll~~~~i~illi~~~~~~ 462 (1177)
+...++++++.+++|.+++.
T Consensus 8 W~~a~igLvvGi~IG~li~R 27 (138)
T COG3105 8 WEYALIGLVVGIIIGALIAR 27 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444333
No 194
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=59.87 E-value=50 Score=40.73 Aligned_cols=36 Identities=28% Similarity=0.458 Sum_probs=29.6
Q ss_pred ccceeeeccccCCCCCCCcEEEEEEeehhhhHHHHHHHH
Q 001044 287 SPLLSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKE 325 (1177)
Q Consensus 287 ~~~~~~~~pv~~~~~~~~~~~~v~gv~~~~~~i~~~l~~ 325 (1177)
...+++..||+|+ +|+.+|||.|...+..+.+.+..
T Consensus 136 g~s~R~~~PI~d~---~g~~IGvVsVG~~l~~i~~~i~~ 171 (537)
T COG3290 136 GKSLRAKVPIFDE---DGKQIGVVSVGYLLSEIDDVILE 171 (537)
T ss_pred hhhheeecceECC---CCCEEEEEEEeeEhhhHHHHHHH
Confidence 4688899999997 79999999999888876665543
No 195
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=58.21 E-value=94 Score=34.09 Aligned_cols=56 Identities=21% Similarity=0.283 Sum_probs=44.1
Q ss_pred Ccc-EEEEeCCCCCCC-H--HHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1088 RFD-LILMDCQMPKMD-G--YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1088 ~~D-LIlmDi~MP~md-G--~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
..| ++++|+.--++. | +++++++++. .++||++-.+-.+.++..++++.|+|+++.
T Consensus 158 g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~------~~ipvia~GGi~~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 158 GLEGIIYTDISRDGTLSGPNFELTKELVKA------VNVPVIASGGVSSIDDLIALKKLGVYGVIV 217 (230)
T ss_pred CCCEEEEEeecCCCCcCCCCHHHHHHHHHh------CCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 466 788888654332 2 6888888864 348999999999999999999999999875
No 196
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=57.83 E-value=92 Score=31.34 Aligned_cols=18 Identities=17% Similarity=0.167 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001044 528 NEQYSTVCQIKKSSYALL 545 (1177)
Q Consensus 528 ~e~~~~l~~I~~ss~~L~ 545 (1177)
...++....+.+++.+|+
T Consensus 64 ~~Y~~l~~Hla~~a~~Ll 81 (128)
T PF06295_consen 64 QDYQKLYQHLAKGAEELL 81 (128)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 334444455666666554
No 197
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=57.82 E-value=45 Score=36.03 Aligned_cols=98 Identities=8% Similarity=0.084 Sum_probs=62.0
Q ss_pred EEEEE----ecChHHHHHHHHHHhhcCCEEEEEc---CHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEe
Q 001044 1023 RILLA----EDTPLIQIVACKILEKVGATVSVVP---DGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMD 1095 (1177)
Q Consensus 1023 ~ILIV----dD~~~~~~~l~~~L~~~G~~v~~a~---nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmD 1095 (1177)
+|++. |.+..-...+..+|+..||+|.-.. ..++.++.+.+ ..||+|.+-
T Consensus 86 ~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~-----------------------~~pd~v~lS 142 (197)
T TIGR02370 86 KVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKK-----------------------EKPLMLTGS 142 (197)
T ss_pred eEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHH-----------------------cCCCEEEEc
Confidence 55553 4556666778888999999999654 33555555543 479999999
Q ss_pred CCCCCCCH--HHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1096 CQMPKMDG--YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1096 i~MP~mdG--~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
+.|+.--. -++.+++|+... ..+++|+ +-+..... .-|.+.|+|.|-.
T Consensus 143 ~~~~~~~~~~~~~i~~l~~~~~---~~~v~i~-vGG~~~~~--~~~~~~gad~~~~ 192 (197)
T TIGR02370 143 ALMTTTMYGQKDINDKLKEEGY---RDSVKFM-VGGAPVTQ--DWADKIGADVYGE 192 (197)
T ss_pred cccccCHHHHHHHHHHHHHcCC---CCCCEEE-EEChhcCH--HHHHHhCCcEEeC
Confidence 98865432 345556665321 1235544 45554433 3467889999864
No 198
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=56.97 E-value=8.8 Score=49.54 Aligned_cols=88 Identities=25% Similarity=0.403 Sum_probs=51.0
Q ss_pred CceEEeCH---HHHHHHHHHHHhhHhhccCCC---eEEEEeeccccCCCCCCCcCCcccccccchhhhhhhhhhcccccc
Q 001044 602 PRNVRGDP---GRVFQIFSNLINNSIKFTSSG---HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNF 675 (1177)
Q Consensus 602 p~~V~gD~---~rL~QIL~NLL~NAIKfT~~G---~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (1177)
|.+..|+- .-|..++.-||+|||.-.-.| .|.|.+.
T Consensus 25 PgMYIGst~~~~GLhhlv~EivdNaiDE~~AG~a~~I~V~i~-------------------------------------- 66 (756)
T PRK14939 25 PGMYIGDTDDGTGLHHMVYEVVDNAIDEALAGHCDDITVTIH-------------------------------------- 66 (756)
T ss_pred CCCeeCCCCCCcchhhhhhHhhcccccccccCCCCEEEEEEc--------------------------------------
Confidence 33445543 458899999999999843334 3444321
Q ss_pred cCCCceEEEEEEEeCCCCCChhhH--------hhhhcccccCCC----CCCCCCCccchhHHHHHHHHH
Q 001044 676 REDNKLALCFEVDDTGCGIDQSKW--------ETVFESFEQGDP----STTRKHGGTGLGLSIVRTLVN 732 (1177)
Q Consensus 676 ~~~~~~~l~i~V~DtG~GI~~e~l--------~~IFe~F~q~d~----s~~~~~~GtGLGLaIvk~IVe 732 (1177)
.++ .|+|.|+|.|||.+.- +-+|....-+.. ...-..|=.|.|++.|..+-+
T Consensus 67 -~dg----sIsV~DnGrGIPvd~h~~~g~~~~Elvlt~lhAggKfd~~~ykvSgGlhGvG~svvNAlS~ 130 (756)
T PRK14939 67 -ADG----SVSVSDNGRGIPTDIHPEEGVSAAEVIMTVLHAGGKFDQNSYKVSGGLHGVGVSVVNALSE 130 (756)
T ss_pred -CCC----eEEEEEcCCcccCCcccccCCchhhheeeeecccCCCCCCcccccCCccCccceEeehccC
Confidence 111 4899999999999732 223331111110 111112347999999887776
No 199
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=56.46 E-value=1.8e+02 Score=27.52 Aligned_cols=17 Identities=18% Similarity=0.393 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHhHHh
Q 001044 489 EASNNYKSQFLANMSHE 505 (1177)
Q Consensus 489 e~~~~~Ks~Fla~~SHE 505 (1177)
.++.+.|..|+.+|-..
T Consensus 64 rES~~Er~K~~~s~~~~ 80 (121)
T PF10669_consen 64 RESKRERQKFIWSMNKQ 80 (121)
T ss_pred hhhHHHHHhHHhhhhHH
Confidence 34455677788877543
No 200
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=55.67 E-value=1.3e+02 Score=32.71 Aligned_cols=42 Identities=26% Similarity=0.381 Sum_probs=35.5
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
.+++.++++|+.. ++||++..+-.+.++..+++++|+|.++.
T Consensus 164 ~~~~~l~~i~~~~------~ipvia~GGI~~~~~~~~~l~~GadgV~v 205 (219)
T cd04729 164 PDFELLKELRKAL------GIPVIAEGRINSPEQAAKALELGADAVVV 205 (219)
T ss_pred CCHHHHHHHHHhc------CCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 4578899998642 48999988888899999999999999876
No 201
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=55.49 E-value=77 Score=42.14 Aligned_cols=120 Identities=15% Similarity=0.081 Sum_probs=78.8
Q ss_pred cEEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCce
Q 001044 773 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 852 (1177)
Q Consensus 773 ~~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 852 (1177)
..+++.++....+..+...+...|.....+.+...+...+. ..+++
T Consensus 691 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~----------------------------------~~~~d 736 (921)
T PRK15347 691 LQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELGR----------------------------------QHRFD 736 (921)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh----------------------------------cCCCC
Confidence 45788888989999999999988877666555443332211 13457
Q ss_pred EEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHH
Q 001044 853 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAV 926 (1177)
Q Consensus 853 ~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~ 926 (1177)
++++|..++++++....+.++...........+.+..............+.|.+.++.||+....+...+....
T Consensus 737 lil~D~~mp~~~G~~~~~~ir~~~~~~~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~ 810 (921)
T PRK15347 737 LVLMDIRMPGLDGLETTQLWRDDPNNLDPDCMIVALTANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALELAA 810 (921)
T ss_pred EEEEeCCCCCCCHHHHHHHHHhchhhcCCCCcEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Confidence 89999999999886555544432211112222333343444455566677889999999999999888876543
No 202
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=55.17 E-value=1.6e+02 Score=34.61 Aligned_cols=97 Identities=14% Similarity=0.033 Sum_probs=61.7
Q ss_pred EEEEEecC----hHHHHHHHHHHhhcC-CEEEE--EcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEe
Q 001044 1023 RILLAEDT----PLIQIVACKILEKVG-ATVSV--VPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMD 1095 (1177)
Q Consensus 1023 ~ILIVdD~----~~~~~~l~~~L~~~G-~~v~~--a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmD 1095 (1177)
.++.+|-. ...++.++.+=++.. ..|.. +.+.++|..+.+. ..|.|..-
T Consensus 113 d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~a------------------------Gad~i~vg 168 (326)
T PRK05458 113 EYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENA------------------------GADATKVG 168 (326)
T ss_pred CEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHc------------------------CcCEEEEC
Confidence 67777533 233333444333332 33333 6788888887753 46776532
Q ss_pred C-------C---CC-CCC--HHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1096 C-------Q---MP-KMD--GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1096 i-------~---MP-~md--G~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
. . .. ... ++.+++.+++. .++|||+--+-....|..+|+.+|||.++.
T Consensus 169 ~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~------~~ipVIAdGGI~~~~Di~KaLa~GA~aV~v 229 (326)
T PRK05458 169 IGPGKVCITKIKTGFGTGGWQLAALRWCAKA------ARKPIIADGGIRTHGDIAKSIRFGATMVMI 229 (326)
T ss_pred CCCCcccccccccCCCCCccHHHHHHHHHHH------cCCCEEEeCCCCCHHHHHHHHHhCCCEEEe
Confidence 1 1 11 112 56667777753 248999999999999999999999998875
No 203
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=54.44 E-value=1.1e+02 Score=34.03 Aligned_cols=97 Identities=21% Similarity=0.162 Sum_probs=61.2
Q ss_pred HHHHHHhhcCCEEEEE--cCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCH-----HHHHH
Q 001044 1036 VACKILEKVGATVSVV--PDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDG-----YEATI 1108 (1177)
Q Consensus 1036 ~l~~~L~~~G~~v~~a--~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~mdG-----~e~~r 1108 (1177)
...+.|-+.||.|... .|.--|-.+.+. =--.+|=+--|.-+| -+.++
T Consensus 114 ~Aae~Lv~eGF~VlPY~~~D~v~akrL~d~-------------------------GcaavMPlgsPIGSg~Gi~n~~~l~ 168 (247)
T PF05690_consen 114 KAAEILVKEGFVVLPYCTDDPVLAKRLEDA-------------------------GCAAVMPLGSPIGSGRGIQNPYNLR 168 (247)
T ss_dssp HHHHHHHHTT-EEEEEE-S-HHHHHHHHHT-------------------------T-SEBEEBSSSTTT---SSTHHHHH
T ss_pred HHHHHHHHCCCEEeecCCCCHHHHHHHHHC-------------------------CCCEEEecccccccCcCCCCHHHHH
Confidence 4456677889999754 444444333321 112678888888776 45677
Q ss_pred HHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE-----CCCCHHHHHHHHHH
Q 001044 1109 EIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT-----KPIDSERMVSTILR 1163 (1177)
Q Consensus 1109 ~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~-----KP~~~~~L~~~I~~ 1163 (1177)
.|++. .++|||+=.+-..+++...++|.|+|+.|. |--++-.|..+.+.
T Consensus 169 ~i~~~------~~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~A~dPv~MA~Af~~ 222 (247)
T PF05690_consen 169 IIIER------ADVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAKAKDPVAMARAFKL 222 (247)
T ss_dssp HHHHH------GSSSBEEES---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHHHH
T ss_pred HHHHh------cCCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhccCCHHHHHHHHHH
Confidence 77764 259999999999999999999999999996 33455556555543
No 204
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=50.62 E-value=53 Score=37.51 Aligned_cols=71 Identities=13% Similarity=0.171 Sum_probs=52.3
Q ss_pred EEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEE
Q 001044 1047 TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVA 1126 (1177)
Q Consensus 1047 ~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~mdG~e~~r~IR~~~~~~~~~~ipIIa 1126 (1177)
-.+.+.+-+||.++++. .+|+|++| +|+..+=-++.+.+|+.. + -.+|.
T Consensus 191 IeVEv~tleea~ea~~~------------------------GaDiI~lD-n~~~e~l~~~v~~l~~~~-----~-~~~le 239 (277)
T TIGR01334 191 ITVEADTIEQALTVLQA------------------------SPDILQLD-KFTPQQLHHLHERLKFFD-----H-IPTLA 239 (277)
T ss_pred EEEECCCHHHHHHHHHc------------------------CcCEEEEC-CCCHHHHHHHHHHHhccC-----C-CEEEE
Confidence 34567899999998853 59999999 455555556666665322 1 23688
Q ss_pred EecCCCHHHHHHHHHcCCCEEE
Q 001044 1127 LTAHAMNADEKKCLGVGMNAYL 1148 (1177)
Q Consensus 1127 lTa~~~~~~~~~~l~aG~d~yL 1148 (1177)
.++.-..+......+.|+|-+.
T Consensus 240 asGGI~~~ni~~ya~~GvD~is 261 (277)
T TIGR01334 240 AAGGINPENIADYIEAGIDLFI 261 (277)
T ss_pred EECCCCHHHHHHHHhcCCCEEE
Confidence 8999999999999999998754
No 205
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=49.68 E-value=2.1e+02 Score=32.30 Aligned_cols=73 Identities=15% Similarity=0.231 Sum_probs=53.7
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCC-HHHHHHHHHHH
Q 001044 1088 RFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPID-SERMVSTILRL 1164 (1177)
Q Consensus 1088 ~~DLIlmDi~MP~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~-~~~L~~~I~~l 1164 (1177)
.||.|+.|++=-.+|--++...||..... .-.|+|=+. ..+.....+++++|+++.+.-=++ .++....+...
T Consensus 40 G~D~v~iD~EHg~~~~~~~~~~i~a~~~~---g~~~lVRvp-~~~~~~i~r~LD~Ga~giivP~v~tae~a~~~v~a~ 113 (256)
T PRK10558 40 GFDWLVLDGEHAPNDVSTFIPQLMALKGS---ASAPVVRVP-TNEPVIIKRLLDIGFYNFLIPFVETAEEARRAVAST 113 (256)
T ss_pred CCCEEEEccccCCCCHHHHHHHHHHHhhc---CCCcEEECC-CCCHHHHHHHhCCCCCeeeecCcCCHHHHHHHHHHc
Confidence 69999999999999988888888876432 234555555 446788899999999999885554 45555555433
No 206
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=48.20 E-value=53 Score=33.56 Aligned_cols=55 Identities=20% Similarity=0.311 Sum_probs=45.8
Q ss_pred ccCCcEEEEEecChHHHHHHHHHHhhcCCEEEEEc----CHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001044 1018 ILEGLRILLAEDTPLIQIVACKILEKVGATVSVVP----DGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1093 (1177)
Q Consensus 1018 ~~~g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~----nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIl 1093 (1177)
.++|.+|+|+.......+-+..+|.+.|++|..++ |.++++. .-|+|+
T Consensus 25 ~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~----------------------------~ADIVv 76 (140)
T cd05212 25 RLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVH----------------------------DADVVV 76 (140)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHh----------------------------hCCEEE
Confidence 36789999999999999999999999999999998 4444322 479999
Q ss_pred EeCCCCC
Q 001044 1094 MDCQMPK 1100 (1177)
Q Consensus 1094 mDi~MP~ 1100 (1177)
.-..-|.
T Consensus 77 sAtg~~~ 83 (140)
T cd05212 77 VGSPKPE 83 (140)
T ss_pred EecCCCC
Confidence 9887774
No 207
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=48.03 E-value=2.7e+02 Score=30.17 Aligned_cols=43 Identities=16% Similarity=0.207 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1103 GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1103 G~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
+++.++++++..+ ..+|||+..+-...++..+++++|+|+++.
T Consensus 158 ~~~~~~~l~~~~~----~~~pvia~gGI~s~edi~~~~~~Ga~gviv 200 (217)
T cd00331 158 DLNTTERLAPLIP----KDVILVSESGISTPEDVKRLAEAGADAVLI 200 (217)
T ss_pred CHHHHHHHHHhCC----CCCEEEEEcCCCCHHHHHHHHHcCCCEEEE
Confidence 4688888876421 248999999999999999999999999874
No 208
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=47.45 E-value=1.1e+02 Score=40.88 Aligned_cols=121 Identities=11% Similarity=0.107 Sum_probs=78.6
Q ss_pred CcEEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCc
Q 001044 772 NTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPV 851 (1177)
Q Consensus 772 ~~~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 851 (1177)
...+++.++....+..+...+...|..+..+.+.......+. ..++
T Consensus 702 ~~~iLvvdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~----------------------------------~~~~ 747 (968)
T TIGR02956 702 PQRVLLVEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECFH----------------------------------QHAF 747 (968)
T ss_pred ccceEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHH----------------------------------CCCC
Confidence 345778888888888888999888877665554443332221 1346
Q ss_pred eEEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001044 852 YVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 927 (1177)
Q Consensus 852 ~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 927 (1177)
+++++|..++++++....+.++.......+. ..+...............+.|.+.++.||+....+...+.....
T Consensus 748 dlvl~D~~mp~~~g~~~~~~ir~~~~~~~~~-pii~lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 822 (968)
T TIGR02956 748 DLALLDINLPDGDGVTLLQQLRAIYGAKNEV-KFIAFSAHVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMIAVILA 822 (968)
T ss_pred CEEEECCCCCCCCHHHHHHHHHhCccccCCC-eEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 7899999999998755444444322111112 22333333334445566678899999999999999998877653
No 209
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=47.04 E-value=91 Score=34.65 Aligned_cols=55 Identities=20% Similarity=0.273 Sum_probs=45.3
Q ss_pred ccEEEEeCCCCCC-CH--HHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1089 FDLILMDCQMPKM-DG--YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1089 ~DLIlmDi~MP~m-dG--~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
-.+|++|+..-+| .| +++++++++. .++||++--+-.+.++..++++.|++..+.
T Consensus 163 ~~ii~tdi~~dGt~~G~~~~li~~l~~~------~~ipvi~~GGi~s~edi~~l~~~G~~~viv 220 (234)
T PRK13587 163 GGIIYTDIAKDGKMSGPNFELTGQLVKA------TTIPVIASGGIRHQQDIQRLASLNVHAAII 220 (234)
T ss_pred CEEEEecccCcCCCCccCHHHHHHHHHh------CCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 4699999987665 34 6777888753 248999999999999999999999999886
No 210
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=46.76 E-value=1.5e+02 Score=39.94 Aligned_cols=117 Identities=12% Similarity=0.161 Sum_probs=79.8
Q ss_pred CcEEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCc
Q 001044 772 NTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPV 851 (1177)
Q Consensus 772 ~~~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 851 (1177)
+..++++++....+..+...++..|..+..+.+.......+. ..++
T Consensus 801 ~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~----------------------------------~~~~ 846 (924)
T PRK10841 801 DMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLS----------------------------------KNHI 846 (924)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHH----------------------------------hCCC
Confidence 456888999999999999999999887766655444333221 1246
Q ss_pred eEEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHH
Q 001044 852 YVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAV 926 (1177)
Q Consensus 852 ~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~ 926 (1177)
+++++|..++++++....+.++.. ... ..++..........+....+.|.+.++.||+....+...+....
T Consensus 847 DlVl~D~~mP~mdG~el~~~ir~~---~~~-~pII~lTa~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~~ 917 (924)
T PRK10841 847 DIVLTDVNMPNMDGYRLTQRLRQL---GLT-LPVIGVTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYA 917 (924)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHhc---CCC-CCEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHH
Confidence 789999999999876555444432 112 22333333344455566677889999999999999998887653
No 211
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=46.67 E-value=1.2e+02 Score=32.42 Aligned_cols=70 Identities=11% Similarity=0.053 Sum_probs=53.0
Q ss_pred EEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEEEe
Q 001044 1049 SVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALT 1128 (1177)
Q Consensus 1049 ~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~mdG~e~~r~IR~~~~~~~~~~ipIIalT 1128 (1177)
.-+.+.+|+.++++ ..+|+|-++- ++.. |.+.++.+++.. +++|+++.-
T Consensus 102 ~gv~t~~e~~~A~~------------------------~Gad~i~~~p-~~~~-g~~~~~~l~~~~-----~~~p~~a~G 150 (190)
T cd00452 102 PGVATPTEIMQALE------------------------LGADIVKLFP-AEAV-GPAYIKALKGPF-----PQVRFMPTG 150 (190)
T ss_pred CCcCCHHHHHHHHH------------------------CCCCEEEEcC-Cccc-CHHHHHHHHhhC-----CCCeEEEeC
Confidence 34668899888875 2689998864 4444 999999998642 358988877
Q ss_pred cCCCHHHHHHHHHcCCCEEEEC
Q 001044 1129 AHAMNADEKKCLGVGMNAYLTK 1150 (1177)
Q Consensus 1129 a~~~~~~~~~~l~aG~d~yL~K 1150 (1177)
+- ..+...+++++|++..-.-
T Consensus 151 GI-~~~n~~~~~~~G~~~v~v~ 171 (190)
T cd00452 151 GV-SLDNAAEWLAAGVVAVGGG 171 (190)
T ss_pred CC-CHHHHHHHHHCCCEEEEEc
Confidence 66 7788999999999887654
No 212
>KOG2353 consensus L-type voltage-dependent Ca2+ channel, alpha2/delta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=46.50 E-value=17 Score=48.57 Aligned_cols=80 Identities=18% Similarity=0.359 Sum_probs=63.5
Q ss_pred CCCCccceeeeecccC-ccceeeeccccCCCCC--------CCcEEEEEEeehhhhHHHHHHHHHHhhcCeEEEEECCcc
Q 001044 271 PDGVASWHVAVSKFTN-SPLLSAALPVWDPTTS--------NKSIVAVVGVTTALSSVGQLMKELVEVHSGHIYLTSQEG 341 (1177)
Q Consensus 271 ~~~~~~w~~~~~~~~~-~~~~~~~~pv~~~~~~--------~~~~~~v~gv~~~~~~i~~~l~~l~~~~~~~iyi~~~~G 341 (1177)
.+-.++|+.++....+ .+++....||+|.... +..++||+|+++.+..+.++.-..+.+..|+.|+.+.+|
T Consensus 422 ~~~pv~wt~vy~~~~~~~~i~~~~~pv~~~~~~~~~~~~~~~~~~lgV~~~dvpv~ei~k~~~~~~lg~~gy~f~vd~nG 501 (1104)
T KOG2353|consen 422 EAHPVTWTQVYTDLLYLGLIVTVSLPVFNRTQRHVRVQNTSNQLLLGVVGTDVPVKEIKKLTPPYKLGLNGYFFAVDNNG 501 (1104)
T ss_pred ccCCceeeehhhhhccCcceEecccCcccchhhhhhhcccccceEEEEEecccCHHHHhhcCCccccCCCceEEEecCCc
Confidence 4456679888766655 4467777899886442 334789999999999999999999999999999999999
Q ss_pred eEEEecCCC
Q 001044 342 YLLATSTNA 350 (1177)
Q Consensus 342 ~ll~~s~~~ 350 (1177)
+++++..-.
T Consensus 502 ~vl~HP~l~ 510 (1104)
T KOG2353|consen 502 YVLLHPQLR 510 (1104)
T ss_pred cEEecCccc
Confidence 999876654
No 213
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=46.31 E-value=57 Score=36.85 Aligned_cols=60 Identities=22% Similarity=0.280 Sum_probs=44.9
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecC------CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIVALTAH------AMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1166 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipIIalTa~------~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~ 1166 (1177)
+.++.++++|+.. .++|+|+||=. ..+....+|.++|+|+.|.=.+.+++....+..+-+
T Consensus 75 ~~~~~~~~~r~~~-----~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~ 140 (258)
T PRK13111 75 DVFELVREIREKD-----PTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKK 140 (258)
T ss_pred HHHHHHHHHHhcC-----CCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 5688899998432 35899998833 344567899999999999988888877766655543
No 214
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=46.18 E-value=1.8e+02 Score=35.34 Aligned_cols=111 Identities=17% Similarity=0.137 Sum_probs=63.6
Q ss_pred CCcEEEEEecChHH---HHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeC
Q 001044 1020 EGLRILLAEDTPLI---QIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDC 1096 (1177)
Q Consensus 1020 ~g~~ILIVdD~~~~---~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi 1096 (1177)
.+.+|.+|+-++.- ...+...-+..|..+..+.+..+....+... ..+|+||.|.
T Consensus 250 ~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~----------------------~~~DlVlIDt 307 (424)
T PRK05703 250 GKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL----------------------RDCDVILIDT 307 (424)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh----------------------CCCCEEEEeC
Confidence 35789999988742 2234444455778888888877666666532 3699999996
Q ss_pred CCCCCCHH--HHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHH----HcCCCEEEECCCCH
Q 001044 1097 QMPKMDGY--EATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL----GVGMNAYLTKPIDS 1154 (1177)
Q Consensus 1097 ~MP~mdG~--e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l----~aG~d~yL~KP~~~ 1154 (1177)
- ++... ..+..+++.-.....+.-..+++++.....+..+.. ..|.+.+|.--++.
T Consensus 308 ~--G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~~~vI~TKlDe 369 (424)
T PRK05703 308 A--GRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPLDGLIFTKLDE 369 (424)
T ss_pred C--CCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCCCEEEEecccc
Confidence 3 33322 222333332111111223477788877776665443 34777775544543
No 215
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=45.84 E-value=2e+02 Score=32.40 Aligned_cols=105 Identities=18% Similarity=0.145 Sum_probs=71.4
Q ss_pred cChHHHHHHHHHHhhcCCEEEEE--cCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCH---
Q 001044 1029 DTPLIQIVACKILEKVGATVSVV--PDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDG--- 1103 (1177)
Q Consensus 1029 D~~~~~~~l~~~L~~~G~~v~~a--~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~mdG--- 1103 (1177)
|+....+ ..+.|-+.||.|... .|..-|-.+.+. =-..+|=+--|.-+|
T Consensus 122 D~~etl~-Aae~Lv~eGF~VlPY~~~D~v~a~rLed~-------------------------Gc~aVMPlgsPIGSg~Gl 175 (267)
T CHL00162 122 DPIGTLK-AAEFLVKKGFTVLPYINADPMLAKHLEDI-------------------------GCATVMPLGSPIGSGQGL 175 (267)
T ss_pred ChHHHHH-HHHHHHHCCCEEeecCCCCHHHHHHHHHc-------------------------CCeEEeeccCcccCCCCC
Confidence 3444444 345566789999864 344333333321 123677777787765
Q ss_pred --HHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEE-----ECCCCHHHHHHHHHHHh
Q 001044 1104 --YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL-----TKPIDSERMVSTILRLT 1165 (1177)
Q Consensus 1104 --~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL-----~KP~~~~~L~~~I~~l~ 1165 (1177)
-..++.|++. .++|||.=.+-...+|..++++.|+|+.+ .|--++.+|..+++...
T Consensus 176 ~n~~~l~~i~e~------~~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~~~AV 238 (267)
T CHL00162 176 QNLLNLQIIIEN------AKIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAKAMKLAV 238 (267)
T ss_pred CCHHHHHHHHHc------CCCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecCCCHHHHHHHHHHHH
Confidence 3466777763 35999999999999999999999999986 46678888887776543
No 216
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=45.46 E-value=69 Score=34.20 Aligned_cols=68 Identities=22% Similarity=0.306 Sum_probs=45.9
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCCE---EEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGAT---VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1098 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~~---v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~M 1098 (1177)
.+|..||-++.....++.-++..|.. .....|...++..... ...+||+|++|-
T Consensus 66 ~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~---------------------~~~~fDiIflDP-- 122 (183)
T PF03602_consen 66 KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAK---------------------KGEKFDIIFLDP-- 122 (183)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHH---------------------CTS-EEEEEE----
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcc---------------------cCCCceEEEECC--
Confidence 48999999999999999999988853 3456777777766532 235899999994
Q ss_pred CCCCH---HHHHHHHHh
Q 001044 1099 PKMDG---YEATIEIRK 1112 (1177)
Q Consensus 1099 P~mdG---~e~~r~IR~ 1112 (1177)
|=..+ .+++..|.+
T Consensus 123 PY~~~~~~~~~l~~l~~ 139 (183)
T PF03602_consen 123 PYAKGLYYEELLELLAE 139 (183)
T ss_dssp STTSCHHHHHHHHHHHH
T ss_pred CcccchHHHHHHHHHHH
Confidence 44433 446666653
No 217
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=45.31 E-value=1.6e+02 Score=39.30 Aligned_cols=120 Identities=13% Similarity=0.113 Sum_probs=75.6
Q ss_pred CCcEEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCC
Q 001044 771 PNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 850 (1177)
Q Consensus 771 ~~~~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 850 (1177)
++..+++.++....+..+...+...|..+..+.........+ ....+
T Consensus 680 ~~~~vLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~---------------------------------~~~~~ 726 (914)
T PRK11466 680 DGLRLLLIEDNPLTQRITAEMLNTSGAQVVAVGNAAQALETL---------------------------------QNSEP 726 (914)
T ss_pred CCcceEEEeCCHHHHHHHHHHHHhcCCceEEeCCHHHHHHHH---------------------------------HcCCC
Confidence 355688888888888888888888887666554433322211 01235
Q ss_pred ceEEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001044 851 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 927 (1177)
Q Consensus 851 ~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 927 (1177)
++++++|+.++++++.-.-+.++. ......+..+ .............+.|.+.++.||+....+...+.....
T Consensus 727 ~Dlvl~D~~mp~~~G~~~~~~lr~---~~~~~~ii~~-t~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~ 799 (914)
T PRK11466 727 FAAALVDFDLPDYDGITLARQLAQ---QYPSLVLIGF-SAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQ 799 (914)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh---hCCCCCEEEE-eCCCchhhHHHHHhcCcCCEEeCCCCHHHHHHHHHHHhh
Confidence 688999999999987544333332 1122222222 222333334445566777899999999999988877654
No 218
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=45.19 E-value=23 Score=34.56 Aligned_cols=42 Identities=33% Similarity=0.442 Sum_probs=27.7
Q ss_pred CCCCccceeeeecccCccceeeeccccCCCCCCCcEEEEEEeehhhh
Q 001044 271 PDGVASWHVAVSKFTNSPLLSAALPVWDPTTSNKSIVAVVGVTTALS 317 (1177)
Q Consensus 271 ~~~~~~w~~~~~~~~~~~~~~~~~pv~~~~~~~~~~~~v~gv~~~~~ 317 (1177)
..|++.++. ...+..+.+.+..||+|. +|+++|+|.|...+.
T Consensus 73 L~G~~~~~~--~~~~~~~~~~~~~PV~d~---~g~viG~V~VG~~~~ 114 (116)
T PF14827_consen 73 LQGKSYTSV--SQGTGGPSLRAFAPVYDS---DGKVIGVVSVGVSLD 114 (116)
T ss_dssp CCT--EEEE--EECTTCEEEEEEEEEE-T---TS-EEEEEEEEEEHH
T ss_pred hcCCceEEe--eecCCceEEEEEEeeECC---CCcEEEEEEEEEEcC
Confidence 355544433 344568899999999986 889999998876553
No 219
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=45.05 E-value=2.6e+02 Score=29.77 Aligned_cols=84 Identities=13% Similarity=0.099 Sum_probs=54.0
Q ss_pred HHHHHHHhhcCCEEE----EEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCC-----CCCCCHHH
Q 001044 1035 IVACKILEKVGATVS----VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ-----MPKMDGYE 1105 (1177)
Q Consensus 1035 ~~l~~~L~~~G~~v~----~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~-----MP~mdG~e 1105 (1177)
..+....++.|..+. .+.+..+++..+. ...|.|..... .....+.+
T Consensus 93 ~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~------------------------~~~d~v~~~~~~~~~~~~~~~~~~ 148 (202)
T cd04726 93 KKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLK------------------------LGVDIVILHRGIDAQAAGGWWPED 148 (202)
T ss_pred HHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHH------------------------CCCCEEEEcCcccccccCCCCCHH
Confidence 334455666777654 4457777776443 25788776421 11245678
Q ss_pred HHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1106 ATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1106 ~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
.++++++. .++||++.-+ -+.+...+++++|+|.++.
T Consensus 149 ~i~~~~~~------~~~~i~~~GG-I~~~~i~~~~~~Gad~vvv 185 (202)
T cd04726 149 DLKKVKKL------LGVKVAVAGG-ITPDTLPEFKKAGADIVIV 185 (202)
T ss_pred HHHHHHhh------cCCCEEEECC-cCHHHHHHHHhcCCCEEEE
Confidence 88888764 2477766544 4588899999999998764
No 220
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=44.95 E-value=1.7e+02 Score=32.48 Aligned_cols=54 Identities=20% Similarity=0.260 Sum_probs=44.2
Q ss_pred cEEEEeCCCCCCC-H--HHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1090 DLILMDCQMPKMD-G--YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1090 DLIlmDi~MP~md-G--~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
.++++|+..-++. | ++++++|.+. ..+||++--+-.+.++..+++++|++..+.
T Consensus 161 ~li~~di~~~G~~~g~~~~~~~~i~~~------~~ipvi~~GGi~s~edi~~l~~~G~~~viv 217 (233)
T cd04723 161 ELIVLDIDRVGSGQGPDLELLERLAAR------ADIPVIAAGGVRSVEDLELLKKLGASGALV 217 (233)
T ss_pred eEEEEEcCccccCCCcCHHHHHHHHHh------cCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 5999999875543 2 6778888764 358999999999999999999999999875
No 221
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=44.46 E-value=31 Score=42.50 Aligned_cols=25 Identities=24% Similarity=0.555 Sum_probs=22.6
Q ss_pred EEEEeCCCCCChhhHhhhhcccccC
Q 001044 685 FEVDDTGCGIDQSKWETVFESFEQG 709 (1177)
Q Consensus 685 i~V~DtG~GI~~e~l~~IFe~F~q~ 709 (1177)
+.|+|+|.||-.++++-+-++|...
T Consensus 59 lQisDnG~GI~reDl~ilCeRftTS 83 (694)
T KOG1979|consen 59 LQISDNGSGIRREDLPILCERFTTS 83 (694)
T ss_pred EEEecCCCccchhhhHHHHHHhhhh
Confidence 7889999999999999999999753
No 222
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=43.94 E-value=20 Score=45.65 Aligned_cols=50 Identities=30% Similarity=0.458 Sum_probs=29.0
Q ss_pred EEEEEeCCCCCChhhHh--------hhhcccccCC---CCCCCC-CCccchhHHHHHHHHHH
Q 001044 684 CFEVDDTGCGIDQSKWE--------TVFESFEQGD---PSTTRK-HGGTGLGLSIVRTLVNK 733 (1177)
Q Consensus 684 ~i~V~DtG~GI~~e~l~--------~IFe~F~q~d---~s~~~~-~~GtGLGLaIvk~IVe~ 733 (1177)
.|+|.|+|.|||-+.-+ -||....-+. ...-+- .|-.|.|++.|.-+-+.
T Consensus 67 sitV~DnGrGIPv~~h~~~~~~~~E~v~t~LhaGgkfd~~~ykvSGGlhGvG~svvNAlS~~ 128 (637)
T TIGR01058 67 SITVQDDGRGIPTGIHQDGNISTVETVFTVLHAGGKFDQGGYKTAGGLHGVGASVVNALSSW 128 (637)
T ss_pred eEEEEECCCcccCcccCcCCCccceeEEEEecccCcCCCCcccccCCcccccccccceeece
Confidence 38999999999975332 2343221111 111111 23479999998877664
No 223
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=43.53 E-value=1.1e+02 Score=34.20 Aligned_cols=58 Identities=16% Similarity=0.110 Sum_probs=46.2
Q ss_pred CCccEEEEeCCCCCC--CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1087 PRFDLILMDCQMPKM--DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1087 ~~~DLIlmDi~MP~m--dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
...|.|-.|.+.|+- --++.+++|++.. ..+|||+--+-.+.++..+++++|||....
T Consensus 160 aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~-----~~ipIIgNGgI~s~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 160 DGFDGIHVDAMYPGKPYADMDLLKILSEEF-----NDKIIIGNNSIDDIESAKEMLKAGADFVSV 219 (231)
T ss_pred cCCCEEEEeeCCCCCchhhHHHHHHHHHhc-----CCCcEEEECCcCCHHHHHHHHHhCCCeEEE
Confidence 368888889887764 2477888887642 249999998889999999999999999864
No 224
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=43.47 E-value=89 Score=35.95 Aligned_cols=71 Identities=15% Similarity=0.101 Sum_probs=49.6
Q ss_pred EEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEE
Q 001044 1047 TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVA 1126 (1177)
Q Consensus 1047 ~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~mdG~e~~r~IR~~~~~~~~~~ipIIa 1126 (1177)
-.+.+.+-+||.+++.. ..|+|++| +|+.-+=-++.+.+|+.. ++ ..+.
T Consensus 202 IeVEv~tl~ea~eal~~------------------------gaDiI~LD-nm~~e~vk~av~~~~~~~-----~~-v~ie 250 (289)
T PRK07896 202 CEVEVDSLEQLDEVLAE------------------------GAELVLLD-NFPVWQTQEAVQRRDARA-----PT-VLLE 250 (289)
T ss_pred EEEEcCCHHHHHHHHHc------------------------CCCEEEeC-CCCHHHHHHHHHHHhccC-----CC-EEEE
Confidence 45668999999999853 58999999 444323333344334321 23 3677
Q ss_pred EecCCCHHHHHHHHHcCCCEEE
Q 001044 1127 LTAHAMNADEKKCLGVGMNAYL 1148 (1177)
Q Consensus 1127 lTa~~~~~~~~~~l~aG~d~yL 1148 (1177)
.++.-..+......+.|+|.+-
T Consensus 251 aSGGI~~~ni~~yA~tGvD~Is 272 (289)
T PRK07896 251 SSGGLTLDTAAAYAETGVDYLA 272 (289)
T ss_pred EECCCCHHHHHHHHhcCCCEEE
Confidence 8888899999999999998765
No 225
>PF10090 DUF2328: Uncharacterized protein conserved in bacteria (DUF2328); InterPro: IPR018762 Members of this family of hypothetical bacterial proteins have no known function.
Probab=43.46 E-value=4.4e+02 Score=28.19 Aligned_cols=170 Identities=15% Similarity=0.183 Sum_probs=99.2
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHHHHHHHHHHHHHHHHhcCC
Q 001044 511 AAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHN 590 (1177)
Q Consensus 511 ~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~l~~~~~dL~~li~~vv~~~~~~a~~k~ 590 (1177)
.+|...+|+|.++.. ++....+..|.+++..... -|.|-|+--|.--- ...++..++- ++++. ......
T Consensus 2 GAI~NGLELL~~~~~--~~~~~~~~LI~~Sa~~A~a----Rl~F~RlAFGaag~-~~~i~~~e~~-~~~~~---~~~~~r 70 (182)
T PF10090_consen 2 GAINNGLELLDDEGD--PEMRPAMELIRESARNASA----RLRFFRLAFGAAGS-GQQIDLGEAR-SVLRG---YFAGGR 70 (182)
T ss_pred cchhhhHHHHcCCCC--ccchHHHHHHHHHHHHHHH----HHHHHHHHcCCCCC-CCCCCHHHHH-HHHHH---HHhCCc
Confidence 467888998865443 2333367778888776654 35677776665433 4567776543 33332 233445
Q ss_pred cEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccCCCe-EEEEeeccccCCCCCCCcCCcccccccchhhhhhhhhh
Q 001044 591 VETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGH-IIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQA 669 (1177)
Q Consensus 591 I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~G~-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (1177)
+++.+..+... .++ ..-+++.||+-=|...-+.|+ |.|....
T Consensus 71 ~~l~W~~~~~~-----~~k-~~vklllnl~l~a~~alprGG~i~V~~~~------------------------------- 113 (182)
T PF10090_consen 71 ITLDWQVERDL-----LPK-PEVKLLLNLLLCAEDALPRGGEITVSIEG------------------------------- 113 (182)
T ss_pred eEEEccCcccc-----CCH-HHHHHHHHHHHHHHhhcCCCCEEEEEEec-------------------------------
Confidence 67776655441 122 344889999998888888764 5543211
Q ss_pred cccccccCCCceEEEEEEEeCCC--CCChhhHhhhhcccccCCCCCCCCCCccchhHHHHHHHHHHcCCEEEEEEe
Q 001044 670 NNAMNFREDNKLALCFEVDDTGC--GIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKK 743 (1177)
Q Consensus 670 ~~~~~~~~~~~~~l~i~V~DtG~--GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~IVe~~GG~I~v~S~ 743 (1177)
..+. ..|.|.=+|. -++++...-+=.. .. ...-.....=-+....+++..|++|.++..
T Consensus 114 -------~~~~--~~~~v~a~G~~~~~~~~~~~~L~g~----~~--~~~l~~~~VQ~~~~~~la~~~G~~l~~~~~ 174 (182)
T PF10090_consen 114 -------SEGD--GGWRVRAEGPRARLDPDLWAALAGE----DP--EEDLDPRNVQFYLLPLLAREAGRRLSVEAT 174 (182)
T ss_pred -------cCCC--ceEEEEEeccccCCCHHHHHHhcCC----CC--CCCCCHHhHHHHHHHHHHHHcCCeEEEEec
Confidence 1111 2355666665 4555555444211 00 112234455678889999999999999754
No 226
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=43.44 E-value=1.1e+02 Score=33.35 Aligned_cols=58 Identities=21% Similarity=0.320 Sum_probs=43.6
Q ss_pred CcEEEEEecChHHHHHHHHHHhhcCC--EEE-EEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEKVGA--TVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ 1097 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~~G~--~v~-~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~ 1097 (1177)
+-+|.-+|-++...+.++..+++.|+ .|. ...++.+.+..+... ....+||+||+|..
T Consensus 70 ~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~-------------------~~~~~fD~VFiDa~ 130 (205)
T PF01596_consen 70 DGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELAND-------------------GEEGQFDFVFIDAD 130 (205)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHT-------------------TTTTSEEEEEEEST
T ss_pred cceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhc-------------------cCCCceeEEEEccc
Confidence 45899999999999999999999886 343 457777777766431 01247999999995
No 227
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=43.38 E-value=3.3e+02 Score=30.65 Aligned_cols=72 Identities=17% Similarity=0.237 Sum_probs=53.2
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCC-HHHHHHHHHH
Q 001044 1088 RFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPID-SERMVSTILR 1163 (1177)
Q Consensus 1088 ~~DLIlmDi~MP~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~-~~~L~~~I~~ 1163 (1177)
.||.|+.|++=-.+|--++...||..... .-.|+|=+ ...+.....+++++|+++.+.-=++ .++....+..
T Consensus 33 G~D~v~iD~EHg~~~~~~~~~~~~a~~~~---g~~~~VRv-p~~~~~~i~r~LD~Ga~gIivP~v~taeea~~~v~a 105 (249)
T TIGR03239 33 GFDWLLLDGEHAPNDVLTFIPQLMALKGS---ASAPVVRP-PWNEPVIIKRLLDIGFYNFLIPFVESAEEAERAVAA 105 (249)
T ss_pred CCCEEEEecccCCCCHHHHHHHHHHHhhc---CCCcEEEC-CCCCHHHHHHHhcCCCCEEEecCcCCHHHHHHHHHH
Confidence 69999999999999988888888876432 22455555 4456788899999999999885554 4555544443
No 228
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=42.63 E-value=99 Score=33.93 Aligned_cols=56 Identities=25% Similarity=0.323 Sum_probs=44.4
Q ss_pred Ccc-EEEEeCCCCCC-CH--HHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcC-CCEEEE
Q 001044 1088 RFD-LILMDCQMPKM-DG--YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG-MNAYLT 1149 (1177)
Q Consensus 1088 ~~D-LIlmDi~MP~m-dG--~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG-~d~yL~ 1149 (1177)
.++ ++++|+..-++ .| +++++++++. ..+|||+-.+-.+.+|..++++.| +++.+.
T Consensus 159 g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~------~~ipvia~GGi~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 159 GVKAIIYTDISRDGTLSGPNVEATRELAAA------VPIPVIASGGVSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred CCCEEEEeeecCcCCcCCCCHHHHHHHHHh------CCCCEEEeCCCCCHHHHHHHHHcCCccEEEE
Confidence 355 89998875443 34 7888888864 248999999999999999999998 999875
No 229
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=42.51 E-value=1.7e+02 Score=30.59 Aligned_cols=55 Identities=22% Similarity=0.271 Sum_probs=40.4
Q ss_pred CccEEEEeCCCCC--------CCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1088 RFDLILMDCQMPK--------MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1088 ~~DLIlmDi~MP~--------mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
.+|+|+.+.--|. -.|.+..+++++. .++||++.-+-. .+...+++++|+|.+..
T Consensus 115 g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~pv~a~GGi~-~~~i~~~~~~Ga~~i~~ 177 (196)
T cd00564 115 GADYVGFGPVFPTPTKPGAGPPLGLELLREIAEL------VEIPVVAIGGIT-PENAAEVLAAGADGVAV 177 (196)
T ss_pred CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh------CCCCEEEECCCC-HHHHHHHHHcCCCEEEE
Confidence 5899987644332 3467888888764 348999887764 67888999999998754
No 230
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=42.22 E-value=2e+02 Score=33.37 Aligned_cols=83 Identities=16% Similarity=0.129 Sum_probs=59.0
Q ss_pred HHHHHhhcCCEEE-EEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCC---CC--CCCHHHHHHHH
Q 001044 1037 ACKILEKVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ---MP--KMDGYEATIEI 1110 (1177)
Q Consensus 1037 l~~~L~~~G~~v~-~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~---MP--~mdG~e~~r~I 1110 (1177)
+...|+..|..|. .+.+.++|..+.+. ..|.|+..-. .. ...-+++++++
T Consensus 101 ~i~~lk~~g~~v~~~v~s~~~a~~a~~~------------------------GaD~Ivv~g~eagGh~g~~~~~~ll~~v 156 (307)
T TIGR03151 101 YIPRLKENGVKVIPVVASVALAKRMEKA------------------------GADAVIAEGMESGGHIGELTTMALVPQV 156 (307)
T ss_pred HHHHHHHcCCEEEEEcCCHHHHHHHHHc------------------------CCCEEEEECcccCCCCCCCcHHHHHHHH
Confidence 4455666787654 46788887666542 5888887332 21 12247888888
Q ss_pred HhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1111 RKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1111 R~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
++. .++|||+--+-.+.++..+++..|+|+.+.
T Consensus 157 ~~~------~~iPviaaGGI~~~~~~~~al~~GA~gV~i 189 (307)
T TIGR03151 157 VDA------VSIPVIAAGGIADGRGMAAAFALGAEAVQM 189 (307)
T ss_pred HHH------hCCCEEEECCCCCHHHHHHHHHcCCCEeec
Confidence 863 248999999999999999999999998764
No 231
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=41.67 E-value=91 Score=35.54 Aligned_cols=61 Identities=23% Similarity=0.312 Sum_probs=45.9
Q ss_pred CHHHHHHHHHhcccccCCCCcceE--EEecCCCHHHHHHHHHcCCCEEEE-----CCCCHHHHHHHHHHHhhcC
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIV--ALTAHAMNADEKKCLGVGMNAYLT-----KPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipII--alTa~~~~~~~~~~l~aG~d~yL~-----KP~~~~~L~~~I~~l~~~~ 1168 (1177)
.|+++++++++. ..+||| +..+-..+++..+++++|+|.++. +.-++.+....+...++..
T Consensus 181 ~d~elLk~l~~~------~~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~~~ 248 (283)
T cd04727 181 APYELVKETAKL------GRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVTHY 248 (283)
T ss_pred CCHHHHHHHHHh------cCCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHHhc
Confidence 478888888864 248997 777777999999999999999864 4346666666666666544
No 232
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=41.48 E-value=3.3e+02 Score=30.98 Aligned_cols=75 Identities=13% Similarity=0.227 Sum_probs=54.2
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001044 1088 RFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1166 (1177)
Q Consensus 1088 ~~DLIlmDi~MP~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~ 1166 (1177)
.||.|+.|++=-..|--++...||..... .-.|+|=+- ..+.....++|++|+++.+.==++..+=.+.+.+..+
T Consensus 39 GfD~v~iD~EHg~~~~~~l~~~i~a~~~~---g~~~lVRvp-~~~~~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~r 113 (267)
T PRK10128 39 GYDWLLIDGEHAPNTIQDLYHQLQAIAPY---ASQPVIRPV-EGSKPLIKQVLDIGAQTLLIPMVDTAEQARQVVSATR 113 (267)
T ss_pred CCCEEEEccccCCCCHHHHHHHHHHHHhc---CCCeEEECC-CCCHHHHHHHhCCCCCeeEecCcCCHHHHHHHHHhcC
Confidence 59999999999999888888888876532 234555554 5567788999999999999966654444444444443
No 233
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=41.45 E-value=1.6e+02 Score=27.71 Aligned_cols=90 Identities=18% Similarity=0.231 Sum_probs=57.3
Q ss_pred EEEEEecChHHHHHHHHHHhhcCCEEEEE--cCHHH-HHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001044 1023 RILLAEDTPLIQIVACKILEKVGATVSVV--PDGLQ-AVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1099 (1177)
Q Consensus 1023 ~ILIVdD~~~~~~~l~~~L~~~G~~v~~a--~nG~e-Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP 1099 (1177)
+||||-..+.+...++..+++.|++.... .+|.+ .-..+... -...|+|++=...
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~---------------------i~~aD~VIv~t~~- 58 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSK---------------------IKKADLVIVFTDY- 58 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHh---------------------cCCCCEEEEEeCC-
Confidence 48999998888899999999999998888 33322 22223221 1357888654332
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHH
Q 001044 1100 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL 1140 (1177)
Q Consensus 1100 ~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l 1140 (1177)
-+-.++..+++.... .++|++..-...-. ...+++
T Consensus 59 --vsH~~~~~vk~~akk---~~ip~~~~~~~~~~-~l~~~l 93 (97)
T PF10087_consen 59 --VSHNAMWKVKKAAKK---YGIPIIYSRSRGVS-SLERAL 93 (97)
T ss_pred --cChHHHHHHHHHHHH---cCCcEEEECCCCHH-HHHHHH
Confidence 346667777776543 45899987644433 444444
No 234
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=40.77 E-value=2.8e+02 Score=30.91 Aligned_cols=89 Identities=12% Similarity=0.058 Sum_probs=56.4
Q ss_pred HHHHHHHHhhcCCEEEEEcCH---HHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCC------HH
Q 001044 1034 QIVACKILEKVGATVSVVPDG---LQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMD------GY 1104 (1177)
Q Consensus 1034 ~~~l~~~L~~~G~~v~~a~nG---~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~md------G~ 1104 (1177)
...+...+++.|..+..+-+. .+.++.+.. ....+++| -.+|+-. -.
T Consensus 118 ~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~-----------------------~~~~~l~m-sv~~~~g~~~~~~~~ 173 (244)
T PRK13125 118 LEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSK-----------------------LSPLFIYY-GLRPATGVPLPVSVE 173 (244)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHH-----------------------hCCCEEEE-EeCCCCCCCchHHHH
Confidence 345667778889887766555 334443322 24567777 4566632 24
Q ss_pred HHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECC
Q 001044 1105 EATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKP 1151 (1177)
Q Consensus 1105 e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP 1151 (1177)
+.++++|+... ..||++=.+-...++..++.++|+|.++.=-
T Consensus 174 ~~i~~lr~~~~-----~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGS 215 (244)
T PRK13125 174 RNIKRVRNLVG-----NKYLVVGFGLDSPEDARDALSAGADGVVVGT 215 (244)
T ss_pred HHHHHHHHhcC-----CCCEEEeCCcCCHHHHHHHHHcCCCEEEECH
Confidence 56777776532 3576654444478888899999999998753
No 235
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=40.71 E-value=2.2e+02 Score=32.74 Aligned_cols=59 Identities=15% Similarity=0.246 Sum_probs=45.9
Q ss_pred HHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCE------EEECCCCHHHHHHHHHHHhhcC
Q 001044 1104 YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNA------YLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1104 ~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~------yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
++.+++|++. .++|||+.-+-.+.++..+++++|||. ++.+|.-..++...+.++++..
T Consensus 223 l~~v~~i~~~------~~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~~~ 287 (300)
T TIGR01037 223 LRMVYDVYKM------VDIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFLKAE 287 (300)
T ss_pred HHHHHHHHhc------CCCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHHHHc
Confidence 3666777753 248999999999999999999999986 6778866677777777766543
No 236
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=39.93 E-value=3.1e+02 Score=26.19 Aligned_cols=45 Identities=20% Similarity=0.235 Sum_probs=31.7
Q ss_pred cceEEEecCCCHHHHHHHHHcCCCEEEECCC--CHHHHHHHHHHHhh
Q 001044 1122 IPIVALTAHAMNADEKKCLGVGMNAYLTKPI--DSERMVSTILRLTK 1166 (1177)
Q Consensus 1122 ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~--~~~~L~~~I~~l~~ 1166 (1177)
+-+|+.-.....+...+|+++|.+-++.||+ +.+++.+.+...-+
T Consensus 65 ~V~I~tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~ 111 (120)
T PF01408_consen 65 AVIIATPPSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKE 111 (120)
T ss_dssp EEEEESSGGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHH
T ss_pred EEEEecCCcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHH
Confidence 3344333445566778999999999999999 77777766655443
No 237
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=39.49 E-value=1.5e+02 Score=38.69 Aligned_cols=102 Identities=14% Similarity=0.163 Sum_probs=72.8
Q ss_pred HHHHHHhhcCCEEEE--EcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC-----CCCHHHHHH
Q 001044 1036 VACKILEKVGATVSV--VPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP-----KMDGYEATI 1108 (1177)
Q Consensus 1036 ~l~~~L~~~G~~v~~--a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP-----~mdG~e~~r 1108 (1177)
.....|++.|+.+.. +.+|...+..+.. -++|.|=+|..+= .-....+++
T Consensus 682 ~~l~~l~~~G~~i~ld~fg~~~~~~~~l~~-----------------------l~~d~iKid~~~~~~~~~~~~~~~~~~ 738 (799)
T PRK11359 682 KRIQILRDMGVGLSVDDFGTGFSGLSRLVS-----------------------LPVTEIKIDKSFVDRCLTEKRILALLE 738 (799)
T ss_pred HHHHHHHHCCCEEEEECCCCchhhHHHHhh-----------------------CCCCEEEECHHHHhhcccChhHHHHHH
Confidence 344568889998865 5788888887754 3799999997541 112344566
Q ss_pred HHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCC----EEEECCCCHHHHHHHHHHH
Q 001044 1109 EIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMN----AYLTKPIDSERMVSTILRL 1164 (1177)
Q Consensus 1109 ~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d----~yL~KP~~~~~L~~~I~~l 1164 (1177)
.|...... .++.+| .++-.+.+....+.+.|+| .|+.||...++|...|++.
T Consensus 739 ~~~~~~~~---~~i~vi-a~gVe~~~~~~~l~~~g~~~~QG~~~~~p~~~~~~~~~~~~~ 794 (799)
T PRK11359 739 AITSIGQS---LNLTVV-AEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSV 794 (799)
T ss_pred HHHHHHHH---CCCeEE-EEcCCCHHHHHHHHhcCCCEEeeCeecCCCCHHHHHHHHHhc
Confidence 66554332 245555 4677888888899999998 4788999999999887654
No 238
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=39.20 E-value=3.7e+02 Score=32.67 Aligned_cols=113 Identities=15% Similarity=0.152 Sum_probs=64.0
Q ss_pred CCcEEEEEecChH---HHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeC
Q 001044 1020 EGLRILLAEDTPL---IQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDC 1096 (1177)
Q Consensus 1020 ~g~~ILIVdD~~~---~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi 1096 (1177)
.|.+|++++-|+. ....++..-+..|+.+..+.+..+..+.+.... ....+|+||+|.
T Consensus 268 ~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk-------------------~~~~~DvVLIDT 328 (436)
T PRK11889 268 KKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK-------------------EEARVDYILIDT 328 (436)
T ss_pred cCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHH-------------------hccCCCEEEEeC
Confidence 4568888887764 333445555567888888888776666554321 012599999996
Q ss_pred CCCCCCH--HHHHHHHHhcccccCCCCcceEEEecCCCHHHHH---HHH-HcCCCEEEECCCCH
Q 001044 1097 QMPKMDG--YEATIEIRKSESEHGARNIPIVALTAHAMNADEK---KCL-GVGMNAYLTKPIDS 1154 (1177)
Q Consensus 1097 ~MP~mdG--~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~---~~l-~aG~d~yL~KP~~~ 1154 (1177)
- +.+- .+.++++++..... .++-.+++++|.....+.. +.+ ..|.+.+|.=-+|-
T Consensus 329 a--GRs~kd~~lm~EL~~~lk~~-~PdevlLVLsATtk~~d~~~i~~~F~~~~idglI~TKLDE 389 (436)
T PRK11889 329 A--GKNYRASETVEEMIETMGQV-EPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDE 389 (436)
T ss_pred c--cccCcCHHHHHHHHHHHhhc-CCCeEEEEECCccChHHHHHHHHHhcCCCCCEEEEEcccC
Confidence 4 3221 33444444432211 1233456677765554433 332 45888887655553
No 239
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=38.95 E-value=2.2e+02 Score=35.44 Aligned_cols=29 Identities=21% Similarity=0.297 Sum_probs=25.9
Q ss_pred CcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1121 NIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1121 ~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
.+|||+=-+-....|..+|+.+|||..+.
T Consensus 344 ~v~vIadGGi~~~~di~kAla~GA~~Vm~ 372 (495)
T PTZ00314 344 GVPCIADGGIKNSGDICKALALGADCVML 372 (495)
T ss_pred CCeEEecCCCCCHHHHHHHHHcCCCEEEE
Confidence 48999988888899999999999998875
No 240
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=38.58 E-value=97 Score=34.96 Aligned_cols=60 Identities=25% Similarity=0.300 Sum_probs=43.6
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecCCC------HHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIVALTAHAM------NADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1166 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~------~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~ 1166 (1177)
+.++.+++||+.. ..+|++.|+=..- +....+|.++|+|..+.-....++....+..+-+
T Consensus 73 ~~~~~v~~ir~~~-----~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~ 138 (256)
T TIGR00262 73 KCFELLKKVRQKH-----PNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKK 138 (256)
T ss_pred HHHHHHHHHHhcC-----CCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHH
Confidence 5688899998642 2478887776544 5567789999999999988887777665555433
No 241
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=38.05 E-value=4.1e+02 Score=29.81 Aligned_cols=74 Identities=16% Similarity=0.159 Sum_probs=53.1
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEEC-CCCHHHHHHHHHHHh
Q 001044 1088 RFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK-PIDSERMVSTILRLT 1165 (1177)
Q Consensus 1088 ~~DLIlmDi~MP~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~K-P~~~~~L~~~I~~l~ 1165 (1177)
.||.|+.|++=-.+|--++...||..... ...|+|=+-+. +..+..+++++|+++.+.= --+.++....+..+-
T Consensus 33 g~D~v~iDlEH~~~~~~~~~~~~~a~~~~---g~~~~VRv~~~-~~~~i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~~ 107 (249)
T TIGR02311 33 GFDWLLIDGEHAPNDVRTILSQLQALAPY---PSSPVVRPAIG-DPVLIKQLLDIGAQTLLVPMIETAEQAEAAVAATR 107 (249)
T ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHhc---CCCcEEECCCC-CHHHHHHHhCCCCCEEEecCcCCHHHHHHHHHHcC
Confidence 69999999999888888888888765331 22456655444 5568899999999988764 446666665554443
No 242
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=37.43 E-value=55 Score=35.13 Aligned_cols=95 Identities=22% Similarity=0.278 Sum_probs=62.8
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCC--CC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ--MP 1099 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~--MP 1099 (1177)
++||++|....+---|..+|+.+|++|.+..|....++.++. ..||.|++--- -|
T Consensus 2 ~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~-----------------------~~pd~iviSPGPG~P 58 (191)
T COG0512 2 MMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEA-----------------------LKPDAIVISPGPGTP 58 (191)
T ss_pred ceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHhh-----------------------cCCCEEEEcCCCCCh
Confidence 589999999999889999999999999998887444444432 36899998643 23
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1100 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1100 ~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
.-.| -....||+. . .++||+++.= ....-+...|.+=.-.
T Consensus 59 ~d~G-~~~~~i~~~-~----~~~PiLGVCL----GHQai~~~fGg~V~~a 98 (191)
T COG0512 59 KDAG-ISLELIRRF-A----GRIPILGVCL----GHQAIAEAFGGKVVRA 98 (191)
T ss_pred HHcc-hHHHHHHHh-c----CCCCEEEECc----cHHHHHHHhCCEEEec
Confidence 3223 233445553 1 3589999872 2344455566654444
No 243
>PLN03237 DNA topoisomerase 2; Provisional
Probab=37.38 E-value=48 Score=45.70 Aligned_cols=55 Identities=16% Similarity=0.257 Sum_probs=32.8
Q ss_pred EEEEEeCCCCCChhhH--------hhhhcccccCCCC---CCC-CCCccchhHHHHHHHHHHcCCEE
Q 001044 684 CFEVDDTGCGIDQSKW--------ETVFESFEQGDPS---TTR-KHGGTGLGLSIVRTLVNKMGGEI 738 (1177)
Q Consensus 684 ~i~V~DtG~GI~~e~l--------~~IFe~F~q~d~s---~~~-~~~GtGLGLaIvk~IVe~~GG~I 738 (1177)
.|+|.|+|.|||-+.- +-||....-+.+- ..+ ..|-.|.|.++|.-+-+.+--++
T Consensus 112 sIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAGgkFdd~~yKvSGGlhGVGasvvNaLS~~f~Vev 178 (1465)
T PLN03237 112 LISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTSSNYDDNEKKTTGGRNGYGAKLTNIFSTEFVIET 178 (1465)
T ss_pred EEEEEecCccccCCCCCCCCCccceEEEEeeeccccCCCCcceeeccccccCccccccccCeeEEEE
Confidence 3899999999997643 2345444332221 111 12347999999887766554333
No 244
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=37.33 E-value=2e+02 Score=30.51 Aligned_cols=56 Identities=25% Similarity=0.289 Sum_probs=41.0
Q ss_pred CccEEEEeCCCCC--------CCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1088 RFDLILMDCQMPK--------MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1088 ~~DLIlmDi~MP~--------mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
..|+|..+-..|- ..|.+..+.+.+.. ..+||+++-+- ..+...++++.|++++..
T Consensus 116 g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~-----~~~pv~a~GGI-~~~~~~~~~~~G~~gva~ 179 (196)
T TIGR00693 116 GADYIGFGPIFPTPTKKDPAPPAGVELLREIAATS-----IDIPIVAIGGI-TLENAAEVLAAGADGVAV 179 (196)
T ss_pred CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc-----CCCCEEEECCc-CHHHHHHHHHcCCCEEEE
Confidence 6899988765442 24788888887542 24898888665 477888999999988753
No 245
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=37.32 E-value=3.5e+02 Score=33.01 Aligned_cols=109 Identities=17% Similarity=0.122 Sum_probs=61.0
Q ss_pred CCcEEEEEecChH---HHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeC
Q 001044 1020 EGLRILLAEDTPL---IQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDC 1096 (1177)
Q Consensus 1020 ~g~~ILIVdD~~~---~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi 1096 (1177)
.|.+|++++-|+. ....+....+..|..+..+.+..++.+.+.. ..+|+||.|.
T Consensus 251 ~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~-----------------------~~~D~VLIDT 307 (432)
T PRK12724 251 MGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLAR-----------------------DGSELILIDT 307 (432)
T ss_pred cCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHh-----------------------CCCCEEEEeC
Confidence 4578999887762 1223444445557766666555555555531 3699999997
Q ss_pred CCCCCC--HHHHHHHHHhccccc--CCCCcceEEEecCCCHHHHHHHHH----cCCCEEEECCCC
Q 001044 1097 QMPKMD--GYEATIEIRKSESEH--GARNIPIVALTAHAMNADEKKCLG----VGMNAYLTKPID 1153 (1177)
Q Consensus 1097 ~MP~md--G~e~~r~IR~~~~~~--~~~~ipIIalTa~~~~~~~~~~l~----aG~d~yL~KP~~ 1153 (1177)
|+.. --+.++.+++..... ..+.-.+++|+|....++.....+ .|.+..|.=-+|
T Consensus 308 --aGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIlTKLD 370 (432)
T PRK12724 308 --AGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLD 370 (432)
T ss_pred --CCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEEEccc
Confidence 3322 123333333321110 012346788888877766665544 577777654454
No 246
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=37.27 E-value=1.1e+02 Score=35.05 Aligned_cols=71 Identities=14% Similarity=0.131 Sum_probs=51.2
Q ss_pred EEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEE
Q 001044 1047 TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVA 1126 (1177)
Q Consensus 1047 ~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~mdG~e~~r~IR~~~~~~~~~~ipIIa 1126 (1177)
-.+.+.+-+||.++++. .+|+|++| +|+..+=-++.+.+++.. + -.++.
T Consensus 192 IeVEv~tleqa~ea~~a------------------------gaDiI~LD-n~~~e~l~~av~~~~~~~-----~-~~~le 240 (284)
T PRK06096 192 IVVEADTPKEAIAALRA------------------------QPDVLQLD-KFSPQQATEIAQIAPSLA-----P-HCTLS 240 (284)
T ss_pred EEEECCCHHHHHHHHHc------------------------CCCEEEEC-CCCHHHHHHHHHHhhccC-----C-CeEEE
Confidence 34567899999999863 59999999 455444445555554321 2 24688
Q ss_pred EecCCCHHHHHHHHHcCCCEEE
Q 001044 1127 LTAHAMNADEKKCLGVGMNAYL 1148 (1177)
Q Consensus 1127 lTa~~~~~~~~~~l~aG~d~yL 1148 (1177)
.++.-..+......+.|+|-..
T Consensus 241 aSGGI~~~ni~~yA~tGvD~Is 262 (284)
T PRK06096 241 LAGGINLNTLKNYADCGIRLFI 262 (284)
T ss_pred EECCCCHHHHHHHHhcCCCEEE
Confidence 8999999999999999998754
No 247
>PLN02591 tryptophan synthase
Probab=37.18 E-value=1e+02 Score=34.77 Aligned_cols=59 Identities=14% Similarity=0.082 Sum_probs=44.6
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecCC------CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIVALTAHA------MNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1166 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipIIalTa~~------~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~ 1166 (1177)
+.++.++++|+. .++|+|+||=.. .+....+|.++|+|+.|.=.+..++....+..+-+
T Consensus 65 ~~~~~~~~~r~~------~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~ 129 (250)
T PLN02591 65 SVISMLKEVAPQ------LSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAK 129 (250)
T ss_pred HHHHHHHHHhcC------CCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 568899999842 248998888533 34456789999999999999998888776655543
No 248
>PRK09966 putative inner membrane diguanylate cyclase; Provisional
Probab=37.07 E-value=5.1e+02 Score=30.70 Aligned_cols=32 Identities=9% Similarity=0.083 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhhcC-eEEEEECCcceEEEecCC
Q 001044 318 SVGQLMKELVEVHS-GHIYLTSQEGYLLATSTN 349 (1177)
Q Consensus 318 ~i~~~l~~l~~~~~-~~iyi~~~~G~ll~~s~~ 349 (1177)
.+...++.+..... .++.+.|.+|.+++.+..
T Consensus 74 ~~~~~l~~l~~~~~i~~i~v~d~~G~vl~~~~~ 106 (407)
T PRK09966 74 AATETLAALGQQGQFSTAEVRDKQQNILASWHY 106 (407)
T ss_pred HHHHHHHHhhcCcceeEEEEECCCCCEEEEeec
Confidence 45556677765554 788899999999987653
No 249
>PRK11677 hypothetical protein; Provisional
Probab=37.02 E-value=4.5e+02 Score=26.83 Aligned_cols=39 Identities=15% Similarity=0.187 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 001044 444 IILISASVCILVIGCICILILTNGVSKEMKLRAELISHL 482 (1177)
Q Consensus 444 ~ll~~~~i~illi~~~~~~~l~~~i~~~~~l~~el~~~l 482 (1177)
++.++++++.+++|+++..+......+..++..++.+..
T Consensus 4 ~~a~i~livG~iiG~~~~R~~~~~~~~q~~le~eLe~~k 42 (134)
T PRK11677 4 EYALIGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNK 42 (134)
T ss_pred HHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHH
Confidence 344556667778888888877666555555555554433
No 250
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=37.01 E-value=3.4e+02 Score=31.79 Aligned_cols=54 Identities=11% Similarity=0.141 Sum_probs=41.5
Q ss_pred HHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE-----CCCCHHHHHHHHHH
Q 001044 1104 YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT-----KPIDSERMVSTILR 1163 (1177)
Q Consensus 1104 ~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~-----KP~~~~~L~~~I~~ 1163 (1177)
-+.++.+++. ..+|||.=.+-...+|..++++.|+|+.|. |-=++-.|..+.+.
T Consensus 238 p~~i~~~~e~------~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~~ 296 (326)
T PRK11840 238 PYTIRLIVEG------ATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMKL 296 (326)
T ss_pred HHHHHHHHHc------CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHHH
Confidence 4566666654 349999988999999999999999999874 55577777666644
No 251
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=36.91 E-value=94 Score=36.40 Aligned_cols=54 Identities=15% Similarity=0.084 Sum_probs=40.6
Q ss_pred ccEEEEeCCCCCCC-HHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEE
Q 001044 1089 FDLILMDCQMPKMD-GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1148 (1177)
Q Consensus 1089 ~DLIlmDi~MP~md-G~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL 1148 (1177)
+|+|.+|+.-|..+ -.|++++||+.. +++|||+=.- .+.++...+.++|+|..+
T Consensus 112 ~d~i~iD~a~gh~~~~~e~I~~ir~~~-----p~~~vi~g~V-~t~e~a~~l~~aGad~i~ 166 (326)
T PRK05458 112 PEYITIDIAHGHSDSVINMIQHIKKHL-----PETFVIAGNV-GTPEAVRELENAGADATK 166 (326)
T ss_pred CCEEEEECCCCchHHHHHHHHHHHhhC-----CCCeEEEEec-CCHHHHHHHHHcCcCEEE
Confidence 59999999997654 367788888642 4577777322 257788899999999976
No 252
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=36.82 E-value=3.2e+02 Score=25.99 Aligned_cols=95 Identities=13% Similarity=0.170 Sum_probs=56.7
Q ss_pred CCcEEEEEecChHHHHHHHHHHhhcCCEEEEEcCH-HHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001044 1020 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDG-LQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1098 (1177)
Q Consensus 1020 ~g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG-~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~M 1098 (1177)
.+.+|.++|.++... ..+...|+.+....-. .+.++.+. -...+.|+....-
T Consensus 20 ~~~~vvvid~d~~~~----~~~~~~~~~~i~gd~~~~~~l~~a~-----------------------i~~a~~vv~~~~~ 72 (116)
T PF02254_consen 20 GGIDVVVIDRDPERV----EELREEGVEVIYGDATDPEVLERAG-----------------------IEKADAVVILTDD 72 (116)
T ss_dssp TTSEEEEEESSHHHH----HHHHHTTSEEEES-TTSHHHHHHTT-----------------------GGCESEEEEESSS
T ss_pred CCCEEEEEECCcHHH----HHHHhcccccccccchhhhHHhhcC-----------------------ccccCEEEEccCC
Confidence 345788888887763 3334566665553222 22233221 2368888887653
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1099 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1099 P~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
. ..-..++..+|+.. +..+||+...+ .+......++|+|..+.
T Consensus 73 d-~~n~~~~~~~r~~~-----~~~~ii~~~~~--~~~~~~l~~~g~d~vi~ 115 (116)
T PF02254_consen 73 D-EENLLIALLARELN-----PDIRIIARVND--PENAELLRQAGADHVIS 115 (116)
T ss_dssp H-HHHHHHHHHHHHHT-----TTSEEEEEESS--HHHHHHHHHTT-SEEEE
T ss_pred H-HHHHHHHHHHHHHC-----CCCeEEEEECC--HHHHHHHHHCCcCEEEC
Confidence 3 44577888888753 34778876643 44566677899998764
No 253
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=36.30 E-value=4.1e+02 Score=28.97 Aligned_cols=57 Identities=16% Similarity=0.230 Sum_probs=41.7
Q ss_pred CccEEEEeCCCCC-------CCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEEC
Q 001044 1088 RFDLILMDCQMPK-------MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1150 (1177)
Q Consensus 1088 ~~DLIlmDi~MP~-------mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~K 1150 (1177)
..|.|+.|-.-+. ...+++++++|+. ..+||++.-+-...++..+++++|+|..+.-
T Consensus 122 gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~------~~~Pvi~~GGI~~~~~v~~~l~~GadgV~vg 185 (236)
T cd04730 122 GADALVAQGAEAGGHRGTFDIGTFALVPEVRDA------VDIPVIAAGGIADGRGIAAALALGADGVQMG 185 (236)
T ss_pred CCCEEEEeCcCCCCCCCccccCHHHHHHHHHHH------hCCCEEEECCCCCHHHHHHHHHcCCcEEEEc
Confidence 4788877642111 2457788888863 2489999888777789999999999988764
No 254
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=35.93 E-value=2e+02 Score=32.73 Aligned_cols=69 Identities=17% Similarity=0.129 Sum_probs=48.6
Q ss_pred EEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEE
Q 001044 1047 TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVA 1126 (1177)
Q Consensus 1047 ~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~mdG~e~~r~IR~~~~~~~~~~ipIIa 1126 (1177)
--..+.+-+||.++.+. ..|.|.+|-.-| |-++++.+... ..+||++
T Consensus 181 Igvev~t~eea~~A~~~------------------------gaDyI~ld~~~~-----e~lk~~v~~~~----~~ipi~A 227 (265)
T TIGR00078 181 IEVEVESLEEAEEAAEA------------------------GADIIMLDNMKP-----EEIKEAVQLLK----GRVLLEA 227 (265)
T ss_pred EEEEeCCHHHHHHHHHc------------------------CCCEEEECCCCH-----HHHHHHHHHhc----CCCcEEE
Confidence 34678999999998752 689999997555 44555444321 2378766
Q ss_pred EecCCCHHHHHHHHHcCCCEEEE
Q 001044 1127 LTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1127 lTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
++.-..+......++|+|..-+
T Consensus 228 -sGGI~~~ni~~~a~~Gvd~Isv 249 (265)
T TIGR00078 228 -SGGITLDNLEEYAETGVDVISS 249 (265)
T ss_pred -ECCCCHHHHHHHHHcCCCEEEe
Confidence 5556688888999999998754
No 255
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=35.88 E-value=3.2e+02 Score=33.55 Aligned_cols=100 Identities=18% Similarity=0.276 Sum_probs=62.1
Q ss_pred CCcEEEEEec---ChHHHHHHHHHHhhc--CCEEE--EEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEE
Q 001044 1020 EGLRILLAED---TPLIQIVACKILEKV--GATVS--VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLI 1092 (1177)
Q Consensus 1020 ~g~~ILIVdD---~~~~~~~l~~~L~~~--G~~v~--~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLI 1092 (1177)
.|..++.||- +.....-..+.+++. ...|. .+.+.++|..+++. ..|.|
T Consensus 235 aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~a------------------------Gad~i 290 (450)
T TIGR01302 235 AGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDA------------------------GADGL 290 (450)
T ss_pred hCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHh------------------------CCCEE
Confidence 3677888887 444333333334433 23333 36778888777753 34555
Q ss_pred E--------------EeCCCCCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1093 L--------------MDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1093 l--------------mDi~MP~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
- .++-.|. ++++..+++.... ..+|||+=-+-....|..+|+.+||+..+.
T Consensus 291 ~vg~g~G~~~~t~~~~~~g~p~---~~~i~~~~~~~~~---~~vpviadGGi~~~~di~kAla~GA~~V~~ 355 (450)
T TIGR01302 291 RVGIGPGSICTTRIVAGVGVPQ---ITAVYDVAEYAAQ---SGIPVIADGGIRYSGDIVKALAAGADAVML 355 (450)
T ss_pred EECCCCCcCCccceecCCCccH---HHHHHHHHHHHhh---cCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 3 3333343 3455555443222 358999988889999999999999998875
No 256
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=35.76 E-value=3.5e+02 Score=30.32 Aligned_cols=52 Identities=17% Similarity=0.225 Sum_probs=40.0
Q ss_pred HHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcC-CCEEEE------CCCCHHHHHHHH
Q 001044 1104 YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG-MNAYLT------KPIDSERMVSTI 1161 (1177)
Q Consensus 1104 ~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG-~d~yL~------KP~~~~~L~~~I 1161 (1177)
+++++++++. .++|||+.-+-.+.++..++++.| +|..+. +-++.+++.+.+
T Consensus 188 ~~~~~~i~~~------~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~~~~~~~ 246 (254)
T TIGR00735 188 LELTKAVSEA------VKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREITIGEVKEYL 246 (254)
T ss_pred HHHHHHHHHh------CCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCHHHHHHHH
Confidence 6888888864 248999999999999999999988 999554 445666555443
No 257
>PRK12704 phosphodiesterase; Provisional
Probab=35.53 E-value=33 Score=42.79 Aligned_cols=44 Identities=16% Similarity=0.043 Sum_probs=38.1
Q ss_pred ceEEEecCCCHH--HHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001044 1123 PIVALTAHAMNA--DEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1166 (1177)
Q Consensus 1123 pIIalTa~~~~~--~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~ 1166 (1177)
.+|++|+++... ....+++.|+.|+..||+.++++...+..-+.
T Consensus 251 ~~v~ls~~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~~~~~~~~ 296 (520)
T PRK12704 251 EAVILSGFDPIRREIARLALEKLVQDGRIHPARIEEMVEKARKEVD 296 (520)
T ss_pred CeEEEecCChhhHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHH
Confidence 488899988775 77789999999999999999999999876553
No 258
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=35.01 E-value=1.3e+02 Score=34.54 Aligned_cols=70 Identities=20% Similarity=0.145 Sum_probs=46.5
Q ss_pred EEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEEEe
Q 001044 1049 SVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALT 1128 (1177)
Q Consensus 1049 ~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~mdG~e~~r~IR~~~~~~~~~~ipIIalT 1128 (1177)
..+.|.+||.+++.. .+|+|.+|- |...+=-++.+.+|+. .+++|+. .+
T Consensus 201 VEv~tleea~eA~~~------------------------GaD~I~LDn-~~~e~l~~av~~~~~~-----~~~i~le-As 249 (288)
T PRK07428 201 VETETLEQVQEALEY------------------------GADIIMLDN-MPVDLMQQAVQLIRQQ-----NPRVKIE-AS 249 (288)
T ss_pred EECCCHHHHHHHHHc------------------------CCCEEEECC-CCHHHHHHHHHHHHhc-----CCCeEEE-EE
Confidence 467899999998853 689999993 3332222333444432 1356655 45
Q ss_pred cCCCHHHHHHHHHcCCCEEEE
Q 001044 1129 AHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1129 a~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
+.-..+...+..+.|+|..-+
T Consensus 250 GGIt~~ni~~ya~tGvD~Isv 270 (288)
T PRK07428 250 GNITLETIRAVAETGVDYISS 270 (288)
T ss_pred CCCCHHHHHHHHHcCCCEEEE
Confidence 566788888999999987653
No 259
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=34.86 E-value=1.4e+02 Score=33.38 Aligned_cols=58 Identities=21% Similarity=0.181 Sum_probs=39.8
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecCCC------HHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHh
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIVALTAHAM------NADEKKCLGVGMNAYLTKPIDSERMVSTILRLT 1165 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~------~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~ 1165 (1177)
.+++.++++|+. .++|+++++-... +....+|.++|+|+.+.=....+++...+..+-
T Consensus 63 ~~~~~~~~vr~~------~~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~ 126 (242)
T cd04724 63 DVLELVKEIRKK------NTIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAK 126 (242)
T ss_pred HHHHHHHHHhhc------CCCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHH
Confidence 467777777753 2478888876442 556778999999999996556666555444443
No 260
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=34.51 E-value=3.1e+02 Score=29.28 Aligned_cols=59 Identities=22% Similarity=0.294 Sum_probs=35.4
Q ss_pred ccEEEEeCCCCCCCH-------HHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1089 FDLILMDCQMPKMDG-------YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1089 ~DLIlmDi~MP~mdG-------~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
.|.|+.+..-|+..| .+..+++|+..... ..++||++-- --..+...++++.|+|.++.
T Consensus 127 ~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~-~~~~~i~v~G-GI~~env~~l~~~gad~iiv 192 (210)
T TIGR01163 127 VDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDEN-GLSILIEVDG-GVNDDNARELAEAGADILVA 192 (210)
T ss_pred CCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhc-CCCceEEEEC-CcCHHHHHHHHHcCCCEEEE
Confidence 577776654454443 45556666543221 1236765444 44567888889999998765
No 261
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=34.40 E-value=1.7e+02 Score=36.44 Aligned_cols=105 Identities=16% Similarity=0.082 Sum_probs=63.2
Q ss_pred CCcEEEEEecChHH----HHHHHHHHhhcC--CEEEE--EcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccE
Q 001044 1020 EGLRILLAEDTPLI----QIVACKILEKVG--ATVSV--VPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDL 1091 (1177)
Q Consensus 1020 ~g~~ILIVdD~~~~----~~~l~~~L~~~G--~~v~~--a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL 1091 (1177)
.|..+++||-.+-. .+.++.+=+..+ ..|.. +.+.+.|.+++.. ..|.
T Consensus 253 aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~a------------------------GAd~ 308 (502)
T PRK07107 253 AGADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEA------------------------GADF 308 (502)
T ss_pred hCCCeEeecCcccccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHc------------------------CCCE
Confidence 46678877754443 333333333333 34444 6677777777752 3455
Q ss_pred E--------------EEeCCCCCCCHHH-HHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1092 I--------------LMDCQMPKMDGYE-ATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1092 I--------------lmDi~MP~mdG~e-~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
| .+++-.|..+... +.+..|+.....+ .++|||+=.+--...|..||+.+|||..+.
T Consensus 309 I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g-~~~~viadgGir~~gdi~KAla~GA~~vm~ 380 (502)
T PRK07107 309 VKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETG-VYIPICSDGGIVYDYHMTLALAMGADFIML 380 (502)
T ss_pred EEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcC-CcceEEEcCCCCchhHHHHHHHcCCCeeee
Confidence 5 4555556555433 3333332211112 348999999999999999999999999875
No 262
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=34.30 E-value=2.8e+02 Score=34.57 Aligned_cols=99 Identities=15% Similarity=0.156 Sum_probs=64.8
Q ss_pred CcEEEEEecChHH---HHHHHHHHhh-c-CCEEE--EEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001044 1021 GLRILLAEDTPLI---QIVACKILEK-V-GATVS--VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1093 (1177)
Q Consensus 1021 g~~ILIVdD~~~~---~~~l~~~L~~-~-G~~v~--~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIl 1093 (1177)
|..|+++|-..-. ..-+...+++ . +..+. -+.+.++|..+++. ..|.|.
T Consensus 260 g~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~a------------------------GaD~i~ 315 (505)
T PLN02274 260 GVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQA------------------------GVDGLR 315 (505)
T ss_pred CCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHc------------------------CcCEEE
Confidence 5677877754322 1123333443 2 34444 37888888888753 578776
Q ss_pred Ee--------------CCCCCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1094 MD--------------CQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1094 mD--------------i~MP~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
.- +-.|...-+..+.++.+. ..+|||+=.+-....+..+|+.+||+.++.
T Consensus 316 vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~------~~vpVIadGGI~~~~di~kAla~GA~~V~v 379 (505)
T PLN02274 316 VGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQ------HGVPVIADGGISNSGHIVKALTLGASTVMM 379 (505)
T ss_pred ECCCCCccccCccccccCCCcccHHHHHHHHHHh------cCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 53 223444455556666542 248999999999999999999999998874
No 263
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=34.21 E-value=57 Score=37.16 Aligned_cols=59 Identities=24% Similarity=0.321 Sum_probs=45.9
Q ss_pred CHHHHHHHHHhcccccCCCCcceE--EEecCCCHHHHHHHHHcCCCEEE-----ECCCCHHHHHHHHHHHhh
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIV--ALTAHAMNADEKKCLGVGMNAYL-----TKPIDSERMVSTILRLTK 1166 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipII--alTa~~~~~~~~~~l~aG~d~yL-----~KP~~~~~L~~~I~~l~~ 1166 (1177)
-|+++++++++. ..+||| +.-+-..+++...+++.|+|.+. .|.-++++...++...+.
T Consensus 184 ~~~elLkei~~~------~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~ 249 (287)
T TIGR00343 184 VPVELLLEVLKL------GKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATT 249 (287)
T ss_pred CCHHHHHHHHHh------CCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHH
Confidence 578999999874 248998 88888899999999999999986 455567766666655543
No 264
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=34.10 E-value=4.1e+02 Score=32.91 Aligned_cols=43 Identities=21% Similarity=0.290 Sum_probs=33.1
Q ss_pred HHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1104 YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1104 ~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
++++..+++.... ..+|||+=-+-....|..+|+.+|||..+.
T Consensus 317 ~~~~~~~~~~~~~---~~~~viadGGi~~~~di~kAla~GA~~v~~ 359 (486)
T PRK05567 317 ITAIADAAEAAKK---YGIPVIADGGIRYSGDIAKALAAGASAVML 359 (486)
T ss_pred HHHHHHHHHHhcc---CCCeEEEcCCCCCHHHHHHHHHhCCCEEEE
Confidence 5566666653222 348999988999999999999999998874
No 265
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=34.01 E-value=2e+02 Score=31.79 Aligned_cols=107 Identities=17% Similarity=0.287 Sum_probs=66.1
Q ss_pred HHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCH-------HHHHHH
Q 001044 1037 ACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDG-------YEATIE 1109 (1177)
Q Consensus 1037 l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~mdG-------~e~~r~ 1109 (1177)
+-..+++.|..+-.|-|...-++.+...+ ...|+|+.=---|+-.| ++-+++
T Consensus 98 ~l~~ik~~g~k~GlalnP~Tp~~~i~~~l---------------------~~~D~vlvMtV~PGfgGq~fi~~~lekI~~ 156 (220)
T PRK08883 98 TLQLIKEHGCQAGVVLNPATPLHHLEYIM---------------------DKVDLILLMSVNPGFGGQSFIPHTLDKLRA 156 (220)
T ss_pred HHHHHHHcCCcEEEEeCCCCCHHHHHHHH---------------------HhCCeEEEEEecCCCCCceecHhHHHHHHH
Confidence 33566778988888766666666555432 24665554233466555 556677
Q ss_pred HHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEE-----ECCCCHHHHHHHHHHHhh
Q 001044 1110 IRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL-----TKPIDSERMVSTILRLTK 1166 (1177)
Q Consensus 1110 IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL-----~KP~~~~~L~~~I~~l~~ 1166 (1177)
+|+.....+ .++||.+ -+.-..+...++.++|||.++ .+.-++.+....+++.++
T Consensus 157 l~~~~~~~~-~~~~I~v-dGGI~~eni~~l~~aGAd~vVvGSaIf~~~d~~~~i~~l~~~~~ 216 (220)
T PRK08883 157 VRKMIDESG-RDIRLEI-DGGVKVDNIREIAEAGADMFVAGSAIFGQPDYKAVIDEMRAELA 216 (220)
T ss_pred HHHHHHhcC-CCeeEEE-ECCCCHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHHHH
Confidence 766543222 3477766 555668888999999999774 444456666666655544
No 266
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=33.91 E-value=4.8e+02 Score=31.40 Aligned_cols=110 Identities=16% Similarity=0.186 Sum_probs=64.9
Q ss_pred CCcEEEEEecChH---HHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeC
Q 001044 1020 EGLRILLAEDTPL---IQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDC 1096 (1177)
Q Consensus 1020 ~g~~ILIVdD~~~---~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi 1096 (1177)
.+.+|.+|.-|.. ....++.+.+.+|..+..+.+..+....+... ..+|+||+|.
T Consensus 205 ~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~----------------------~~~DlVLIDT 262 (388)
T PRK12723 205 KSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS----------------------KDFDLVLVDT 262 (388)
T ss_pred CCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh----------------------CCCCEEEEcC
Confidence 3568888887764 22234445555788888888776655555431 4699999997
Q ss_pred C--CCCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHH----cCCCEEEECCCC
Q 001044 1097 Q--MPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG----VGMNAYLTKPID 1153 (1177)
Q Consensus 1097 ~--MP~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~----aG~d~yL~KP~~ 1153 (1177)
- +| .|-.. +.++++.........-.+++|+|.....+..+.++ .|.+.++.--+|
T Consensus 263 aGr~~-~~~~~-l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I~TKlD 323 (388)
T PRK12723 263 IGKSP-KDFMK-LAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIFTKLD 323 (388)
T ss_pred CCCCc-cCHHH-HHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEEEecc
Confidence 5 22 23332 33444332211112236788898887777765543 467777654454
No 267
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=33.66 E-value=32 Score=43.20 Aligned_cols=47 Identities=17% Similarity=0.321 Sum_probs=28.5
Q ss_pred EEEEEeCCCCCChhhHhhh------------hcccccCCCCCCCCCCccchhHHHHHHHH
Q 001044 684 CFEVDDTGCGIDQSKWETV------------FESFEQGDPSTTRKHGGTGLGLSIVRTLV 731 (1177)
Q Consensus 684 ~i~V~DtG~GI~~e~l~~I------------Fe~F~q~d~s~~~~~~GtGLGLaIvk~IV 731 (1177)
.++|+|||+||.++++..- ++.+.+.. ....--|-.|+|++=|--++
T Consensus 75 TLtI~DNGIGMT~~Ev~~~LgTIAkSgT~~F~~~l~~~~-~~~~lIGQFGVGFYSaFmVA 133 (623)
T COG0326 75 TLTISDNGIGMTKDEVIENLGTIAKSGTKEFLESLSEDQ-KDSDLIGQFGVGFYSAFMVA 133 (623)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHhhhccHHHHHHHhcccc-ccccccccccchhhheeeee
Confidence 4789999999999887532 12222111 11222467899998765443
No 268
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=33.41 E-value=4e+02 Score=29.05 Aligned_cols=54 Identities=19% Similarity=0.247 Sum_probs=41.0
Q ss_pred cEEEEeCCCCCC---CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1090 DLILMDCQMPKM---DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1090 DLIlmDi~MP~m---dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
-++++|+..-++ -.+++++++++. .++||++-.+-.+.++..++++.|+|+.+.
T Consensus 162 ~iii~~~~~~g~~~g~~~~~i~~i~~~------~~ipvi~~GGi~~~~di~~~~~~Ga~gv~v 218 (234)
T cd04732 162 AIIYTDISRDGTLSGPNFELYKELAAA------TGIPVIASGGVSSLDDIKALKELGVAGVIV 218 (234)
T ss_pred EEEEEeecCCCccCCCCHHHHHHHHHh------cCCCEEEecCCCCHHHHHHHHHCCCCEEEE
Confidence 366788754332 226888888763 258999999999999999999999999764
No 269
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=32.69 E-value=3.2e+02 Score=31.19 Aligned_cols=71 Identities=13% Similarity=0.121 Sum_probs=47.6
Q ss_pred EEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEEE
Q 001044 1048 VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVAL 1127 (1177)
Q Consensus 1048 v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~mdG~e~~r~IR~~~~~~~~~~ipIIal 1127 (1177)
...+.+-+||.++++. .+|+|.+|-+ + +|.++++-+.... ..+++ +|..
T Consensus 186 ~VEv~tleea~~A~~~------------------------GaDiI~LDn~----~-~e~l~~~v~~~~~-~~~~~-~ieA 234 (273)
T PRK05848 186 EIECESLEEAKNAMNA------------------------GADIVMCDNM----S-VEEIKEVVAYRNA-NYPHV-LLEA 234 (273)
T ss_pred EEEeCCHHHHHHHHHc------------------------CCCEEEECCC----C-HHHHHHHHHHhhc-cCCCe-EEEE
Confidence 3468899999999863 5899998853 2 2333333222111 12334 5667
Q ss_pred ecCCCHHHHHHHHHcCCCEEEE
Q 001044 1128 TAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1128 Ta~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
++.-..+...+..+.|+|.+.+
T Consensus 235 sGgIt~~ni~~ya~~GvD~Isv 256 (273)
T PRK05848 235 SGNITLENINAYAKSGVDAISS 256 (273)
T ss_pred ECCCCHHHHHHHHHcCCCEEEe
Confidence 8888999999999999998754
No 270
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=32.60 E-value=2.1e+02 Score=27.65 Aligned_cols=79 Identities=19% Similarity=0.140 Sum_probs=51.1
Q ss_pred ecChHHHHHHHHHHhhcCCEEEEEc---CHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCC-H
Q 001044 1028 EDTPLIQIVACKILEKVGATVSVVP---DGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMD-G 1103 (1177)
Q Consensus 1028 dD~~~~~~~l~~~L~~~G~~v~~a~---nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~md-G 1103 (1177)
|-++.....+..+|++.|+++.... .-.+.++.+.. ..||+|.+.+.+.... .
T Consensus 10 ~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i~~-----------------------~~pdiV~iS~~~~~~~~~ 66 (125)
T cd02065 10 DVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAAKE-----------------------EDADVVGLSALSTTHMEA 66 (125)
T ss_pred chhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHH-----------------------cCCCEEEEecchHhHHHH
Confidence 5666777788889999999988764 23333444432 4799999999886643 4
Q ss_pred HHHHHHHHhcccccCCCCcceEEEecCCCH
Q 001044 1104 YEATIEIRKSESEHGARNIPIVALTAHAMN 1133 (1177)
Q Consensus 1104 ~e~~r~IR~~~~~~~~~~ipIIalTa~~~~ 1133 (1177)
++.++++|+..+ .+++|++=-.+...
T Consensus 67 ~~~~~~~~~~~p----~~~~ivvGG~~~t~ 92 (125)
T cd02065 67 MKLVIEALKELG----IDIPVVVGGAHPTA 92 (125)
T ss_pred HHHHHHHHHhcC----CCCeEEEeCCcCCc
Confidence 555666665422 15777665544443
No 271
>PRK11173 two-component response regulator; Provisional
Probab=32.50 E-value=5.5e+02 Score=27.52 Aligned_cols=115 Identities=14% Similarity=0.155 Sum_probs=66.5
Q ss_pred EEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCceE
Q 001044 774 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 853 (1177)
Q Consensus 774 ~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 853 (1177)
.+++.+.....+..+...++..|.....+.+.......+ ...++++
T Consensus 5 ~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~----------------------------------~~~~~dl 50 (237)
T PRK11173 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQIL----------------------------------SENDINL 50 (237)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH----------------------------------hhCCCCE
Confidence 355666666667777777777776554444333222111 0123567
Q ss_pred EEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001044 854 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 927 (1177)
Q Consensus 854 v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 927 (1177)
+++|..++++++..+.+.++. .. ...+ .+................|.+.++.||+....+...+.....
T Consensus 51 vild~~l~~~~g~~~~~~lr~---~~-~~pi-i~lt~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~ 119 (237)
T PRK11173 51 VIMDINLPGKNGLLLARELRE---QA-NVAL-MFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 (237)
T ss_pred EEEcCCCCCCCHHHHHHHHhc---CC-CCCE-EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 888999888876544443332 11 1222 223333333334445567888899999999888877766554
No 272
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=32.49 E-value=1.3e+02 Score=33.19 Aligned_cols=58 Identities=21% Similarity=0.323 Sum_probs=41.8
Q ss_pred EEEEEecChHHHHHHHHHHhhcCCE--EEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001044 1023 RILLAEDTPLIQIVACKILEKVGAT--VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1100 (1177)
Q Consensus 1023 ~ILIVdD~~~~~~~l~~~L~~~G~~--v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~ 1100 (1177)
++.-+|-|+...+.++..+++.|.. +..... -+|++.+.+. ...+||+||+|..=+.
T Consensus 86 ~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~-gdal~~l~~~--------------------~~~~fDliFIDadK~~ 144 (219)
T COG4122 86 RLTTIERDEERAEIARENLAEAGVDDRIELLLG-GDALDVLSRL--------------------LDGSFDLVFIDADKAD 144 (219)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCcceEEEEec-CcHHHHHHhc--------------------cCCCccEEEEeCChhh
Confidence 8999999999999999999999863 444431 3445544321 1358999999997544
Q ss_pred C
Q 001044 1101 M 1101 (1177)
Q Consensus 1101 m 1101 (1177)
-
T Consensus 145 y 145 (219)
T COG4122 145 Y 145 (219)
T ss_pred C
Confidence 3
No 273
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=32.15 E-value=5.9e+02 Score=26.83 Aligned_cols=73 Identities=18% Similarity=0.249 Sum_probs=45.3
Q ss_pred CceEEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001044 850 PVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 927 (1177)
Q Consensus 850 p~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 927 (1177)
.+.++++|..+.+.++....+.++. .. . ..+.+..............+.|.+-++.||+....+...+.....
T Consensus 45 ~~dlvild~~l~~~~g~~~~~~lr~---~~-~-~pvi~lt~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~ 117 (225)
T PRK10529 45 KPDLIILDLGLPDGDGIEFIRDLRQ---WS-A-IPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 (225)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHc---CC-C-CCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 3467888999988876544443332 11 1 222333333333444455667888899999999888887766543
No 274
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=32.13 E-value=5.9e+02 Score=27.32 Aligned_cols=114 Identities=12% Similarity=0.087 Sum_probs=64.8
Q ss_pred EEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCceEE
Q 001044 775 VVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVV 854 (1177)
Q Consensus 775 v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v 854 (1177)
+++.......+..+..++...|.....+.+.......+ ....+.++
T Consensus 4 iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~----------------------------------~~~~~dlv 49 (240)
T PRK10701 4 IVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATI----------------------------------LREQPDLV 49 (240)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHH----------------------------------hhCCCCEE
Confidence 45556666667777777777776554443322221111 01234678
Q ss_pred EEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001044 855 VIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 927 (1177)
Q Consensus 855 ~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 927 (1177)
++|..+++.++..+.+.++. .. ...+.++ ...............|.+.++.||+....+...+....+
T Consensus 50 ild~~l~~~~g~~~~~~ir~---~~-~~pii~l-~~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~ 117 (240)
T PRK10701 50 LLDIMLPGKDGMTICRDLRP---KW-QGPIVLL-TSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLR 117 (240)
T ss_pred EEeCCCCCCCHHHHHHHHHh---cC-CCCEEEE-ECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHh
Confidence 88999988876444443332 11 1122222 222222333445567888899999999888877766554
No 275
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=32.11 E-value=6.4e+02 Score=26.97 Aligned_cols=117 Identities=10% Similarity=0.141 Sum_probs=67.0
Q ss_pred cEEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCce
Q 001044 773 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 852 (1177)
Q Consensus 773 ~~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 852 (1177)
..+++.+.....+..+...+...|.....+.+...+...+ ...+++
T Consensus 6 ~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~----------------------------------~~~~~d 51 (239)
T PRK09468 6 YKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLL----------------------------------TRESFH 51 (239)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH----------------------------------hcCCCC
Confidence 3466667777777777777777776554444333222111 112456
Q ss_pred EEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001044 853 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 927 (1177)
Q Consensus 853 ~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 927 (1177)
++++|..+.+.++..+...++. ......+.+ ................|.+.++.||+....+...+.....
T Consensus 52 lvild~~l~~~~g~~~~~~lr~---~~~~~pii~-ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~ 122 (239)
T PRK09468 52 LMVLDLMLPGEDGLSICRRLRS---QNNPTPIIM-LTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLR 122 (239)
T ss_pred EEEEeCCCCCCCHHHHHHHHHh---cCCCCCEEE-EECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhc
Confidence 7888998888766433333322 111122222 2233333334445567888899999999988887776554
No 276
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=31.62 E-value=3.4e+02 Score=35.43 Aligned_cols=121 Identities=16% Similarity=0.093 Sum_probs=76.0
Q ss_pred CCcEEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCC
Q 001044 771 PNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 850 (1177)
Q Consensus 771 ~~~~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 850 (1177)
++..+++.++....+..+...++..|.....+.+.......+. ..+
T Consensus 524 ~~~~ILivdD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~----------------------------------~~~ 569 (779)
T PRK11091 524 PALNILLVEDIELNVIVARSVLEKLGNSVDVAMTGKEALEMFD----------------------------------PDE 569 (779)
T ss_pred cccceEEEcCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhh----------------------------------cCC
Confidence 3456888899999999999999888876665554443322211 134
Q ss_pred ceEEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001044 851 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 927 (1177)
Q Consensus 851 ~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 927 (1177)
++++++|+.++++++.-..+.++..... .......+...... ....+....|.+.++.||+....+...+.....
T Consensus 570 ~Dlvl~D~~mp~~~G~e~~~~ir~~~~~-~~~~~ii~~ta~~~-~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 644 (779)
T PRK11091 570 YDLVLLDIQLPDMTGLDIARELRERYPR-EDLPPLVALTANVL-KDKKEYLDAGMDDVLSKPLSVPALTAMIKKFWD 644 (779)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcccc-CCCCcEEEEECCch-HhHHHHHHCCCCEEEECCCCHHHHHHHHHHHhc
Confidence 5788999999999875544444322111 11112222222222 223455667888999999999999988877653
No 277
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=31.56 E-value=2.7e+02 Score=31.97 Aligned_cols=97 Identities=11% Similarity=0.145 Sum_probs=61.4
Q ss_pred EEEEEecChHHHHHHHHHHhh---cC---CEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeC
Q 001044 1023 RILLAEDTPLIQIVACKILEK---VG---ATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDC 1096 (1177)
Q Consensus 1023 ~ILIVdD~~~~~~~l~~~L~~---~G---~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi 1096 (1177)
.|||-|++-... .+...+++ .. .-.+.+.+-+||.++++. .+|+|++|-
T Consensus 156 ~vLikdnHi~~~-~i~~av~~~r~~~~~~kIeVEv~~leea~~a~~a------------------------gaDiI~LDn 210 (278)
T PRK08385 156 AILIKDNHLALV-PLEEAIRRAKEFSVYKVVEVEVESLEDALKAAKA------------------------GADIIMLDN 210 (278)
T ss_pred cEEEccCHHHHH-HHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHc------------------------CcCEEEECC
Confidence 377777664433 34444432 22 134568999999999863 589999997
Q ss_pred CCCCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1097 QMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1097 ~MP~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
+.|. +=-++.+.+++... ..-..+..++.-..+...+..+.|+|..-+
T Consensus 211 ~~~e-~l~~~v~~l~~~~~----~~~~~leaSGGI~~~ni~~yA~tGvD~Is~ 258 (278)
T PRK08385 211 MTPE-EIREVIEALKREGL----RERVKIEVSGGITPENIEEYAKLDVDVISL 258 (278)
T ss_pred CCHH-HHHHHHHHHHhcCc----CCCEEEEEECCCCHHHHHHHHHcCCCEEEe
Confidence 6544 22333344443211 112467778888899999999999987653
No 278
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=31.38 E-value=6.2e+02 Score=30.58 Aligned_cols=112 Identities=14% Similarity=0.142 Sum_probs=65.2
Q ss_pred CcEEEEEecChH---HHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCC
Q 001044 1021 GLRILLAEDTPL---IQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ 1097 (1177)
Q Consensus 1021 g~~ILIVdD~~~---~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~ 1097 (1177)
+.+|.+++-|+. ....++..-+..|..+..+.+..+..+.++... ....+|+||.|.-
T Consensus 234 g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~-------------------~~~~~D~VLIDTA 294 (407)
T PRK12726 234 NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT-------------------YVNCVDHILIDTV 294 (407)
T ss_pred CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH-------------------hcCCCCEEEEECC
Confidence 568888887764 234555555667877777888877666665321 0135899999984
Q ss_pred CCCCC--HHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHH----HcCCCEEEECCCCH
Q 001044 1098 MPKMD--GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL----GVGMNAYLTKPIDS 1154 (1177)
Q Consensus 1098 MP~md--G~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l----~aG~d~yL~KP~~~ 1154 (1177)
+.+ --+.+..+++..... .++..++++++.....+....+ ..|.+.+|.=-+|-
T Consensus 295 --Gr~~~d~~~l~EL~~l~~~~-~p~~~~LVLsag~~~~d~~~i~~~f~~l~i~glI~TKLDE 354 (407)
T PRK12726 295 --GRNYLAEESVSEISAYTDVV-HPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDE 354 (407)
T ss_pred --CCCccCHHHHHHHHHHhhcc-CCceEEEECCCcccHHHHHHHHHhcCcCCCCEEEEEcccC
Confidence 331 223344444432211 1334456677766666666554 35677777654543
No 279
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=31.12 E-value=4.9e+02 Score=29.71 Aligned_cols=113 Identities=15% Similarity=0.144 Sum_probs=60.3
Q ss_pred CcEEEEEecChH---HHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCC
Q 001044 1021 GLRILLAEDTPL---IQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ 1097 (1177)
Q Consensus 1021 g~~ILIVdD~~~---~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~ 1097 (1177)
+.++.+++-+.. ....++...+..|+.+..+.+..+..+.++... ....+|+||.|.-
T Consensus 103 ~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~-------------------~~~~~D~ViIDt~ 163 (270)
T PRK06731 103 KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK-------------------EEARVDYILIDTA 163 (270)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHH-------------------hcCCCCEEEEECC
Confidence 456777665543 333445556668888888777655444443210 1236999999974
Q ss_pred CCCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHH----HHcCCCEEEECCCC
Q 001044 1098 MPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKC----LGVGMNAYLTKPID 1153 (1177)
Q Consensus 1098 MP~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~----l~aG~d~yL~KP~~ 1153 (1177)
=-.-..-+.++++++..... .+.-.+.+++|.....+.... -..|.+..+.--+|
T Consensus 164 Gr~~~~~~~l~el~~~~~~~-~~~~~~LVl~a~~~~~d~~~~~~~f~~~~~~~~I~TKlD 222 (270)
T PRK06731 164 GKNYRASETVEEMIETMGQV-EPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFD 222 (270)
T ss_pred CCCcCCHHHHHHHHHHHhhh-CCCeEEEEEcCccCHHHHHHHHHHhCCCCCCEEEEEeec
Confidence 21111233444444432211 122346677776655444332 23577777654454
No 280
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=31.05 E-value=1e+03 Score=29.98 Aligned_cols=16 Identities=6% Similarity=0.065 Sum_probs=8.3
Q ss_pred HHHHHHhhHHHHHHHH
Q 001044 462 LILTNGVSKEMKLRAE 477 (1177)
Q Consensus 462 ~~l~~~i~~~~~l~~e 477 (1177)
+.+.+.+.++++...+
T Consensus 212 ~~i~~~I~~pL~~l~~ 227 (554)
T PRK15041 212 FGIKASLVAPMNRLID 227 (554)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3345556666654433
No 281
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=30.95 E-value=4.4e+02 Score=25.85 Aligned_cols=104 Identities=15% Similarity=0.127 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhhcCCEEEEEc--CHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCC-HHHHHH
Q 001044 1032 LIQIVACKILEKVGATVSVVP--DGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMD-GYEATI 1108 (1177)
Q Consensus 1032 ~~~~~l~~~L~~~G~~v~~a~--nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~md-G~e~~r 1108 (1177)
.-...+..+|.+.|+.+.... .-++.++.+.. ...||+|.+.++-+.+. ..++++
T Consensus 3 lgl~~~aa~l~~~g~~v~~~~~~~~~~~~~~~~~----------------------~~~pdiv~~S~~~~~~~~~~~~~~ 60 (127)
T cd02068 3 LGLAYLAAVLEDAGFIVAEHDVLSADDIVEDIKE----------------------LLKPDVVGISLMTSAIYEALELAK 60 (127)
T ss_pred chHHHHHHHHHHCCCeeeecCCCCHHHHHHHHHH----------------------hcCCCEEEEeeccccHHHHHHHHH
Confidence 344567888988898776644 23333444421 14799999999655543 577888
Q ss_pred HHHhcccccCCCCcceEEEecCCCHHHHHH-HHHcCCCEEEECCCCHHHHHHHHHHH
Q 001044 1109 EIRKSESEHGARNIPIVALTAHAMNADEKK-CLGVGMNAYLTKPIDSERMVSTILRL 1164 (1177)
Q Consensus 1109 ~IR~~~~~~~~~~ipIIalTa~~~~~~~~~-~l~aG~d~yL~KP~~~~~L~~~I~~l 1164 (1177)
.||+.. ++++||+--.+.+.. -.. ....++| |+.+=---..+.+.+..+
T Consensus 61 ~ik~~~-----p~~~iv~GG~~~t~~-p~~~~~~~~~D-~vv~GEgE~~~~~l~~~l 110 (127)
T cd02068 61 IAKEVL-----PNVIVVVGGPHATFF-PEEILEEPGVD-FVVIGEGEETFLKLLEEL 110 (127)
T ss_pred HHHHHC-----CCCEEEECCcchhhC-HHHHhcCCCCC-EEEECCcHHHHHHHHHHH
Confidence 888753 356777655554432 223 3445666 444432223344444443
No 282
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=30.93 E-value=1.2e+02 Score=32.37 Aligned_cols=38 Identities=13% Similarity=0.235 Sum_probs=30.1
Q ss_pred EEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHH
Q 001044 1024 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEAL 1061 (1177)
Q Consensus 1024 ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l 1061 (1177)
|||+|-....-.-+..+|++.|+.+.+..+....++.+
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~ 39 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEI 39 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHH
Confidence 89999999988889999999999998877543323333
No 283
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=30.79 E-value=78 Score=33.78 Aligned_cols=38 Identities=13% Similarity=0.188 Sum_probs=31.0
Q ss_pred EEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHH
Q 001044 1024 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEAL 1061 (1177)
Q Consensus 1024 ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l 1061 (1177)
||+||.....-.-+..+|.+.|++|.++.+.+--++.+
T Consensus 2 il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~ 39 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDI 39 (191)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHH
Confidence 89999999888889999999999999998764333444
No 284
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=30.69 E-value=1.4e+02 Score=32.93 Aligned_cols=55 Identities=18% Similarity=0.203 Sum_probs=44.9
Q ss_pred ccEEEEeCCCCCC-CH--HHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1089 FDLILMDCQMPKM-DG--YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1089 ~DLIlmDi~MP~m-dG--~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
..+|++|+.--+| .| +|+++++++. ..+|||+--+-.+.+|..++.++|+|+.+.
T Consensus 155 ~~ii~tdI~~dGt~~G~d~eli~~i~~~------~~~pvia~GGi~s~ed~~~l~~~Ga~~viv 212 (221)
T TIGR00734 155 YGLIVLDIHSVGTMKGPNLELLTKTLEL------SEHPVMLGGGISGVEDLELLKEMGVSAVLV 212 (221)
T ss_pred CEEEEEECCccccCCCCCHHHHHHHHhh------CCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 3699999987544 34 7888888864 248999998899999999999999999875
No 285
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=30.52 E-value=6.5 Score=51.02 Aligned_cols=15 Identities=33% Similarity=0.443 Sum_probs=12.7
Q ss_pred EEEEeCCCCCChhhH
Q 001044 685 FEVDDTGCGIDQSKW 699 (1177)
Q Consensus 685 i~V~DtG~GI~~e~l 699 (1177)
++|.|+|.|||-+.-
T Consensus 163 ItV~DnGRGIPvd~h 177 (903)
T PTZ00109 163 VEISDNGRGIPCDVS 177 (903)
T ss_pred EEEEeCCcccccccc
Confidence 789999999997543
No 286
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=30.40 E-value=50 Score=41.56 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=19.5
Q ss_pred EEEEEeCCCCCChhhHhhhhcccc
Q 001044 684 CFEVDDTGCGIDQSKWETVFESFE 707 (1177)
Q Consensus 684 ~i~V~DtG~GI~~e~l~~IFe~F~ 707 (1177)
.|+|.|+|+||++.+.+-+-..++
T Consensus 51 ~IEV~DNG~GI~~~n~~~l~lkh~ 74 (672)
T KOG1978|consen 51 SIEVSDNGSGISATDFEGLALKHT 74 (672)
T ss_pred eEEEecCCCCCCccchhhhhhhhh
Confidence 389999999999998877655554
No 287
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=30.36 E-value=2.8e+02 Score=29.24 Aligned_cols=82 Identities=20% Similarity=0.157 Sum_probs=55.9
Q ss_pred HHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC-------CHHHHHH
Q 001044 1036 VACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM-------DGYEATI 1108 (1177)
Q Consensus 1036 ~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~m-------dG~e~~r 1108 (1177)
..+.++.....--..+.+.+|+.++.+ ..+|.|+.----|-- -|++..+
T Consensus 87 ~~r~~~~~~~~ig~S~h~~~e~~~a~~------------------------~g~dYv~~gpvf~T~sk~~~~~~g~~~l~ 142 (180)
T PF02581_consen 87 EARKLLGPDKIIGASCHSLEEAREAEE------------------------LGADYVFLGPVFPTSSKPGAPPLGLDGLR 142 (180)
T ss_dssp HHHHHHTTTSEEEEEESSHHHHHHHHH------------------------CTTSEEEEETSS--SSSSS-TTCHHHHHH
T ss_pred HhhhhcccceEEEeecCcHHHHHHhhh------------------------cCCCEEEECCccCCCCCccccccCHHHHH
Confidence 345666554455567899999766653 257999987654433 3888888
Q ss_pred HHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEE
Q 001044 1109 EIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1148 (1177)
Q Consensus 1109 ~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL 1148 (1177)
++++.. .+||+++-+-+ .++..++.++|+++.-
T Consensus 143 ~~~~~~------~~pv~AlGGI~-~~~i~~l~~~Ga~gvA 175 (180)
T PF02581_consen 143 EIARAS------PIPVYALGGIT-PENIPELREAGADGVA 175 (180)
T ss_dssp HHHHHT------SSCEEEESS---TTTHHHHHHTT-SEEE
T ss_pred HHHHhC------CCCEEEEcCCC-HHHHHHHHHcCCCEEE
Confidence 888652 38999998864 5567889999999864
No 288
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=30.32 E-value=3.7e+02 Score=28.67 Aligned_cols=88 Identities=16% Similarity=0.192 Sum_probs=62.5
Q ss_pred cEEEEEecChHHHHHHHHHHhhcC--CEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVG--ATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1099 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G--~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP 1099 (1177)
.+++|+.+++..++.+..+++..| |.|..+.+-+++++.++. ....+.|+..+...+
T Consensus 32 ~~~yiv~~~~~q~~~v~~I~~~WGg~fnv~~~~s~~~~i~~~k~---------------------~G~vvhLtmyga~~~ 90 (176)
T PRK03958 32 DKIILASNDEHVKESVEDIVERWGGPFEVEVTKSWKKEIREWKD---------------------GGIVVHLTMYGENIQ 90 (176)
T ss_pred ceEEEecCcHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHHHh---------------------CCcEEEEEEecCCcc
Confidence 479999999999999999999987 679999999999998862 235789999999886
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHH
Q 001044 1100 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1138 (1177)
Q Consensus 1100 ~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~ 1138 (1177)
. .+ ..||+.... . ..-+|++-|...+.+.-+
T Consensus 91 ~--~~---~~ir~~~~~-~--~p~LIvvGg~gvp~evye 121 (176)
T PRK03958 91 D--VE---PEIREAHRK-G--EPLLIVVGAEKVPREVYE 121 (176)
T ss_pred c--hH---HHHHHhhcc-C--CcEEEEEcCCCCCHHHHh
Confidence 6 44 445542111 1 112334446666655543
No 289
>PRK14974 cell division protein FtsY; Provisional
Probab=30.27 E-value=4.9e+02 Score=30.69 Aligned_cols=113 Identities=18% Similarity=0.235 Sum_probs=59.7
Q ss_pred CCcEEEEEecCh---HHHHHHHHHHhhcCCEEEEEcCHHHH----HHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEE
Q 001044 1020 EGLRILLAEDTP---LIQIVACKILEKVGATVSVVPDGLQA----VEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLI 1092 (1177)
Q Consensus 1020 ~g~~ILIVdD~~---~~~~~l~~~L~~~G~~v~~a~nG~eA----l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLI 1092 (1177)
.|.+|++++-+. -....+....+..|..+.....|.+. .+.++.. ....+|+|
T Consensus 167 ~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~--------------------~~~~~DvV 226 (336)
T PRK14974 167 NGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA--------------------KARGIDVV 226 (336)
T ss_pred cCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH--------------------HhCCCCEE
Confidence 356888887663 33344555666778777766555332 2332211 12368999
Q ss_pred EEeCCCCCCC-HHHHHHHHHhcccccCCCCcceEEEecCCCHHHH--HHHH--HcCCCEEEECCCCH
Q 001044 1093 LMDCQMPKMD-GYEATIEIRKSESEHGARNIPIVALTAHAMNADE--KKCL--GVGMNAYLTKPIDS 1154 (1177)
Q Consensus 1093 lmDi~MP~md-G~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~--~~~l--~aG~d~yL~KP~~~ 1154 (1177)
|.|.- +.+. --++...+++..... .++..++++.|....+.. .+.+ ..|.+..+.=-+|.
T Consensus 227 LIDTa-Gr~~~~~~lm~eL~~i~~~~-~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIlTKlD~ 291 (336)
T PRK14974 227 LIDTA-GRMHTDANLMDELKKIVRVT-KPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVDA 291 (336)
T ss_pred EEECC-CccCCcHHHHHHHHHHHHhh-CCceEEEeeccccchhHHHHHHHHHhcCCCCEEEEeeecC
Confidence 99975 2221 234444554432211 134456666665543333 2333 36888877654554
No 290
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=30.10 E-value=1.8e+02 Score=30.16 Aligned_cols=88 Identities=17% Similarity=0.156 Sum_probs=48.1
Q ss_pred CCcEEEEEecChHHHHHHHHHHhhcCCEEEE---------------EcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCC
Q 001044 1020 EGLRILLAEDTPLIQIVACKILEKVGATVSV---------------VPDGLQAVEALNRMLAAESSRRRSLLQGSPSETP 1084 (1177)
Q Consensus 1020 ~g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~---------------a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~ 1084 (1177)
+++|+||.....+....+...|+...+.+.. ...+- ....+. + ..
T Consensus 32 ~~~rvLvL~PTRvva~em~~aL~~~~~~~~t~~~~~~~~g~~~i~vMc~at-~~~~~~--------------~-----p~ 91 (148)
T PF07652_consen 32 RRLRVLVLAPTRVVAEEMYEALKGLPVRFHTNARMRTHFGSSIIDVMCHAT-YGHFLL--------------N-----PC 91 (148)
T ss_dssp TT--EEEEESSHHHHHHHHHHTTTSSEEEESTTSS----SSSSEEEEEHHH-HHHHHH--------------T-----SS
T ss_pred ccCeEEEecccHHHHHHHHHHHhcCCcccCceeeeccccCCCcccccccHH-HHHHhc--------------C-----cc
Confidence 5689999999999999999999876543221 11111 111111 1 11
Q ss_pred CCCCccEEEEeCCCCCCCH--HHHHHHHHhcccccCCCCcceEEEecCC
Q 001044 1085 DTPRFDLILMDCQMPKMDG--YEATIEIRKSESEHGARNIPIVALTAHA 1131 (1177)
Q Consensus 1085 ~~~~~DLIlmDi~MP~mdG--~e~~r~IR~~~~~~~~~~ipIIalTa~~ 1131 (1177)
....||+||||= ---+|- +-+.-.|+..... ....+|.+||-.
T Consensus 92 ~~~~yd~II~DE-cH~~Dp~sIA~rg~l~~~~~~---g~~~~i~mTATP 136 (148)
T PF07652_consen 92 RLKNYDVIIMDE-CHFTDPTSIAARGYLRELAES---GEAKVIFMTATP 136 (148)
T ss_dssp CTTS-SEEEECT-TT--SHHHHHHHHHHHHHHHT---TS-EEEEEESS-
T ss_pred cccCccEEEEec-cccCCHHHHhhheeHHHhhhc---cCeeEEEEeCCC
Confidence 235799999992 334554 4444455655332 235789999853
No 291
>PRK00811 spermidine synthase; Provisional
Probab=30.06 E-value=2.1e+02 Score=32.76 Aligned_cols=70 Identities=24% Similarity=0.286 Sum_probs=46.2
Q ss_pred cEEEEEecChHHHHHHHHHHhhcC------CEE-EEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEE
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVG------ATV-SVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILM 1094 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G------~~v-~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlm 1094 (1177)
.+|.+||=++...+.++..|...+ -.+ ....|+.+.+... ...||+|++
T Consensus 101 ~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~------------------------~~~yDvIi~ 156 (283)
T PRK00811 101 EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAET------------------------ENSFDVIIV 156 (283)
T ss_pred CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhC------------------------CCcccEEEE
Confidence 489999999999999999886432 233 3456766544321 247999999
Q ss_pred eCCCCCCCH-----HHHHHHHHhccc
Q 001044 1095 DCQMPKMDG-----YEATIEIRKSES 1115 (1177)
Q Consensus 1095 Di~MP~mdG-----~e~~r~IR~~~~ 1115 (1177)
|+.-|..-+ -|+.+.+++.-.
T Consensus 157 D~~dp~~~~~~l~t~ef~~~~~~~L~ 182 (283)
T PRK00811 157 DSTDPVGPAEGLFTKEFYENCKRALK 182 (283)
T ss_pred CCCCCCCchhhhhHHHHHHHHHHhcC
Confidence 986664222 355566665443
No 292
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=29.39 E-value=2.4e+02 Score=30.18 Aligned_cols=67 Identities=21% Similarity=0.269 Sum_probs=42.1
Q ss_pred cEEEEeCCC-CC-CCHHHHHHHHHhcccccCCCCcce-EEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHH
Q 001044 1090 DLILMDCQM-PK-MDGYEATIEIRKSESEHGARNIPI-VALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTIL 1162 (1177)
Q Consensus 1090 DLIlmDi~M-P~-mdG~e~~r~IR~~~~~~~~~~ipI-IalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~ 1162 (1177)
.+.+||... |. .-|++.+++||+.. ..|+ +.+...........|.++|+|..+.-....++....++
T Consensus 29 ~~~~~Dg~~~~~~~~~~~~v~~i~~~~------~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~~~~~~~~~~~~ 98 (210)
T TIGR01163 29 HVDVMDGHFVPNLTFGPPVLEALRKYT------DLPIDVHLMVENPDRYIEDFAEAGADIITVHPEASEHIHRLLQ 98 (210)
T ss_pred EEcCCCCCCCCCcccCHHHHHHHHhcC------CCcEEEEeeeCCHHHHHHHHHHcCCCEEEEccCCchhHHHHHH
Confidence 334455333 33 25889999999631 2565 43555556667778889999997776555555554443
No 293
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=29.37 E-value=1.5e+02 Score=32.29 Aligned_cols=55 Identities=18% Similarity=0.288 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcccccCCCCcceEEEecCC----------CHHHHHHHHHcCCCEEEE------CC--CCHHHHHHHHHH
Q 001044 1103 GYEATIEIRKSESEHGARNIPIVALTAHA----------MNADEKKCLGVGMNAYLT------KP--IDSERMVSTILR 1163 (1177)
Q Consensus 1103 G~e~~r~IR~~~~~~~~~~ipIIalTa~~----------~~~~~~~~l~aG~d~yL~------KP--~~~~~L~~~I~~ 1163 (1177)
+++..+.+|+. ..+|||.++.+. ..++...|.++|+|-.+. +| ....++...+++
T Consensus 44 ~~~~i~~i~~~------~~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~ 116 (221)
T PRK01130 44 GVEDIKAIRAV------VDVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKE 116 (221)
T ss_pred CHHHHHHHHHh------CCCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHh
Confidence 48888999874 248888665422 245678999999994443 45 556666666665
No 294
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=29.13 E-value=87 Score=35.86 Aligned_cols=60 Identities=25% Similarity=0.345 Sum_probs=46.2
Q ss_pred CHHHHHHHHHhcccccCCCCcceE--EEecCCCHHHHHHHHHcCCCEEEE-----CCCCHHHHHHHHHHHhhc
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIV--ALTAHAMNADEKKCLGVGMNAYLT-----KPIDSERMVSTILRLTKN 1167 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipII--alTa~~~~~~~~~~l~aG~d~yL~-----KP~~~~~L~~~I~~l~~~ 1167 (1177)
-++|+++++++. ..+||| +.-+-..+++..+++++|+|.++. |.-++.+...++...+..
T Consensus 190 ~~~elL~ei~~~------~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv~ai~~ 256 (293)
T PRK04180 190 APYELVKEVAEL------GRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAIVEATTH 256 (293)
T ss_pred CCHHHHHHHHHh------CCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHHHHH
Confidence 478999999874 248998 777778999999999999999864 445777777666665543
No 295
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=29.11 E-value=86 Score=39.61 Aligned_cols=56 Identities=20% Similarity=0.256 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhhHhhccCCCeEEEEeeccccCCCCCCCcCCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeC
Q 001044 611 RVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDT 690 (1177)
Q Consensus 611 rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~Dt 690 (1177)
-|.|++.-|+-|+|..... .|.|.+. -..+.+.|.|+
T Consensus 21 sla~~VeElv~NSiDA~At-~V~v~V~------------------------------------------~~t~sv~ViDd 57 (1142)
T KOG1977|consen 21 SLAQCVEELVLNSIDAEAT-CVAVRVN------------------------------------------METFSVQVIDD 57 (1142)
T ss_pred HHHHHHHHHHhhccccCce-EEEEEec------------------------------------------CceeEEEEEec
Confidence 4789999999999987332 2333321 11366899999
Q ss_pred CCCCChhhHhhhhcccccC
Q 001044 691 GCGIDQSKWETVFESFEQG 709 (1177)
Q Consensus 691 G~GI~~e~l~~IFe~F~q~ 709 (1177)
|.|+..+++..+=++|+..
T Consensus 58 G~G~~rdDl~~lg~ry~TS 76 (1142)
T KOG1977|consen 58 GFGMGRDDLEKLGNRYFTS 76 (1142)
T ss_pred CCCccHHHHHHHHhhhhhh
Confidence 9999999999999988753
No 296
>PRK13566 anthranilate synthase; Provisional
Probab=29.09 E-value=1.6e+02 Score=38.27 Aligned_cols=38 Identities=26% Similarity=0.401 Sum_probs=33.0
Q ss_pred ccCCcEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHH
Q 001044 1018 ILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGL 1055 (1177)
Q Consensus 1018 ~~~g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~ 1055 (1177)
...|++|||||-...+-..+.+.|++.|++|..+....
T Consensus 523 ~~~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~ 560 (720)
T PRK13566 523 VGEGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGF 560 (720)
T ss_pred CCCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCC
Confidence 45678999999998888899999999999999887764
No 297
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=29.06 E-value=2.4e+02 Score=32.35 Aligned_cols=67 Identities=12% Similarity=0.071 Sum_probs=0.0
Q ss_pred EEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEEEe
Q 001044 1049 SVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALT 1128 (1177)
Q Consensus 1049 ~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~mdG~e~~r~IR~~~~~~~~~~ipIIalT 1128 (1177)
..++|.+|+.++++. .+|+|.+|-+ |.|-++++.+... .++|+++ +
T Consensus 194 VEv~tleea~eA~~~------------------------gaD~I~LD~~-----~~e~l~~~v~~~~----~~i~leA-s 239 (277)
T PRK05742 194 VEVESLDELRQALAA------------------------GADIVMLDEL-----SLDDMREAVRLTA----GRAKLEA-S 239 (277)
T ss_pred EEeCCHHHHHHHHHc------------------------CCCEEEECCC-----CHHHHHHHHHHhC----CCCcEEE-E
Q ss_pred cCCCHHHHHHHHHcCCCEEEE
Q 001044 1129 AHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1129 a~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
+.-..+....+.++|+|.+-+
T Consensus 240 GGIt~~ni~~~a~tGvD~Isv 260 (277)
T PRK05742 240 GGINESTLRVIAETGVDYISI 260 (277)
T ss_pred CCCCHHHHHHHHHcCCCEEEE
No 298
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=28.95 E-value=3.9e+02 Score=30.66 Aligned_cols=67 Identities=16% Similarity=0.006 Sum_probs=48.5
Q ss_pred EEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEEE
Q 001044 1048 VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVAL 1127 (1177)
Q Consensus 1048 v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~mdG~e~~r~IR~~~~~~~~~~ipIIal 1127 (1177)
.+.|.+-+|+.++++. .+|+|++|-+-| .+=-++...++. ..++-.
T Consensus 197 eVEv~slee~~ea~~~------------------------gaDiImLDn~s~-e~l~~av~~~~~---------~~~lea 242 (281)
T PRK06543 197 EVEVDRLDQIEPVLAA------------------------GVDTIMLDNFSL-DDLREGVELVDG---------RAIVEA 242 (281)
T ss_pred EEEeCCHHHHHHHHhc------------------------CCCEEEECCCCH-HHHHHHHHHhCC---------CeEEEE
Confidence 4678999999998853 689999996433 333344444331 237888
Q ss_pred ecCCCHHHHHHHHHcCCCEEE
Q 001044 1128 TAHAMNADEKKCLGVGMNAYL 1148 (1177)
Q Consensus 1128 Ta~~~~~~~~~~l~aG~d~yL 1148 (1177)
++.-..+...+..+.|+|-.-
T Consensus 243 SGgI~~~ni~~yA~tGVD~Is 263 (281)
T PRK06543 243 SGNVNLNTVGAIASTGVDVIS 263 (281)
T ss_pred ECCCCHHHHHHHHhcCCCEEE
Confidence 999999999999899998654
No 299
>PRK07695 transcriptional regulator TenI; Provisional
Probab=28.77 E-value=4e+02 Score=28.58 Aligned_cols=71 Identities=14% Similarity=0.256 Sum_probs=45.3
Q ss_pred CccEEEEeCCCC-----C--CCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEE-----ECCCCHH
Q 001044 1088 RFDLILMDCQMP-----K--MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL-----TKPIDSE 1155 (1177)
Q Consensus 1088 ~~DLIlmDi~MP-----~--mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL-----~KP~~~~ 1155 (1177)
..|.|+..-..| + ..|++.++++++. .++||+++-+- ..++..+++++|+|.+. .+.-++.
T Consensus 115 Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~------~~ipvia~GGI-~~~~~~~~~~~Ga~gvav~s~i~~~~~p~ 187 (201)
T PRK07695 115 GADYVVYGHVFPTDCKKGVPARGLEELSDIARA------LSIPVIAIGGI-TPENTRDVLAAGVSGIAVMSGIFSSANPY 187 (201)
T ss_pred CCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHh------CCCCEEEEcCC-CHHHHHHHHHcCCCEEEEEHHHhcCCCHH
Confidence 577776653222 1 2367888888753 24899988777 78889999999999873 2323444
Q ss_pred HHHHHHHHHh
Q 001044 1156 RMVSTILRLT 1165 (1177)
Q Consensus 1156 ~L~~~I~~l~ 1165 (1177)
+-...+.+.+
T Consensus 188 ~~~~~~~~~~ 197 (201)
T PRK07695 188 SKAKRYAESI 197 (201)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 300
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=28.37 E-value=1.3e+02 Score=34.29 Aligned_cols=64 Identities=17% Similarity=0.246 Sum_probs=46.3
Q ss_pred HHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCCCCCCC
Q 001044 1105 EATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEATG 1174 (1177)
Q Consensus 1105 e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~~~~~~~ 1174 (1177)
+..+++|+..+ .-.+|.++.++. ++..++.++|+|..+.=|+.++++...+..+-.+.+-+++|
T Consensus 170 ~~v~~~r~~~~-----~~~~Igvev~s~-eea~~A~~~gaDyI~ld~~~~e~l~~~~~~~~~~ipi~AiG 233 (268)
T cd01572 170 EAVRRARAAAP-----FTLKIEVEVETL-EQLKEALEAGADIIMLDNMSPEELREAVALLKGRVLLEASG 233 (268)
T ss_pred HHHHHHHHhCC-----CCCeEEEEECCH-HHHHHHHHcCCCEEEECCcCHHHHHHHHHHcCCCCcEEEEC
Confidence 35677777532 124688888865 66788999999999999999999988886543345555554
No 301
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=28.17 E-value=5.8e+02 Score=27.45 Aligned_cols=74 Identities=20% Similarity=0.352 Sum_probs=44.8
Q ss_pred CccEEEEeCCCCCCCH-------HHHHHHHHhcccccCCCCc-ceEEEecCCCHHHHHHHHHcCCCEEE-----ECCCCH
Q 001044 1088 RFDLILMDCQMPKMDG-------YEATIEIRKSESEHGARNI-PIVALTAHAMNADEKKCLGVGMNAYL-----TKPIDS 1154 (1177)
Q Consensus 1088 ~~DLIlmDi~MP~mdG-------~e~~r~IR~~~~~~~~~~i-pIIalTa~~~~~~~~~~l~aG~d~yL-----~KP~~~ 1154 (1177)
..|.|+++..-|+.+| ++-.+++|+.... ..+ |.|++.+--..+...++.++|+|.++ .+.-++
T Consensus 131 ~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~---~~~~~~i~v~GGI~~~nv~~l~~~GaD~vvvgSai~~~~d~ 207 (220)
T PRK05581 131 LLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDE---RGLDILIEVDGGINADNIKECAEAGADVFVAGSAVFGAPDY 207 (220)
T ss_pred hCCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHh---cCCCceEEEECCCCHHHHHHHHHcCCCEEEEChhhhCCCCH
Confidence 3687777765565544 3455555543221 123 56667777777888899999999764 444455
Q ss_pred HHHHHHHHHH
Q 001044 1155 ERMVSTILRL 1164 (1177)
Q Consensus 1155 ~~L~~~I~~l 1164 (1177)
.+....++++
T Consensus 208 ~~~~~~~~~~ 217 (220)
T PRK05581 208 KEAIDSLRAE 217 (220)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 302
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=28.06 E-value=31 Score=43.73 Aligned_cols=51 Identities=22% Similarity=0.289 Sum_probs=30.5
Q ss_pred EEEEeCCCCCChhhHh-----------hhhcccccCCC---CCCCCCCccchhHHHHHHHHHHcC
Q 001044 685 FEVDDTGCGIDQSKWE-----------TVFESFEQGDP---STTRKHGGTGLGLSIVRTLVNKMG 735 (1177)
Q Consensus 685 i~V~DtG~GI~~e~l~-----------~IFe~F~q~d~---s~~~~~~GtGLGLaIvk~IVe~~G 735 (1177)
++|.|+|.|||-+..+ -||....-+.+ ...-..|-.|.|.+.|.-+-+.+-
T Consensus 81 isV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~LhaGgkFd~~ykvSGGlhGVG~svvNaLS~~~~ 145 (602)
T PHA02569 81 VTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTKAGSNFDDTNRVTGGMNGVGSSLTNFFSVLFI 145 (602)
T ss_pred EEEEECCCcccCCcccccccccccceEEEEEeeccccccCCcceeeCCcCCccceeeeccchhhh
Confidence 8999999999986442 22322221111 111123458999999877766543
No 303
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=27.95 E-value=4.8e+02 Score=27.71 Aligned_cols=59 Identities=19% Similarity=0.169 Sum_probs=38.1
Q ss_pred ccEEEEeCCCCCCCH-------HHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1089 FDLILMDCQMPKMDG-------YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1089 ~DLIlmDi~MP~mdG-------~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
.|.|+.+...|+-+| .+..+++|+..... ..++||++.- --..+...++.++|+|.++.
T Consensus 128 ~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~-~~~~pi~v~G-GI~~env~~~~~~gad~iiv 193 (211)
T cd00429 128 VDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPEN-NLNLLIEVDG-GINLETIPLLAEAGADVLVA 193 (211)
T ss_pred CCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhc-CCCeEEEEEC-CCCHHHHHHHHHcCCCEEEE
Confidence 688888776666544 44556666543211 1247875544 44468888999999999875
No 304
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=27.80 E-value=7.1e+02 Score=25.93 Aligned_cols=76 Identities=13% Similarity=0.117 Sum_probs=44.7
Q ss_pred CceEEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001044 850 PVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 927 (1177)
Q Consensus 850 p~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 927 (1177)
+.+++++|..+++.++..+.+.+...... .... +.+..............+.|...++.||+....+...+..+..
T Consensus 46 ~~d~vi~d~~~~~~~g~~~~~~l~~~~~~-~~~~-ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 121 (226)
T TIGR02154 46 GPDLILLDWMLPGTSGIELCRRLRRRPET-RAIP-IIMLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLR 121 (226)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHccccC-CCCC-EEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhc
Confidence 34678889988888764433333221100 1112 2223333333344455667888899999999988888777654
No 305
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=27.30 E-value=5.3e+02 Score=29.67 Aligned_cols=58 Identities=21% Similarity=0.130 Sum_probs=41.9
Q ss_pred CccEEEEeCCC-----CCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1088 RFDLILMDCQM-----PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1088 ~~DLIlmDi~M-----P~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
..|.|.+.-.- .+...++++.++++... .++|||+--+-.+..|..+|+..|||....
T Consensus 193 G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~----~~ipvia~GGI~~~~d~~kal~lGAd~V~i 255 (299)
T cd02809 193 GADGIVVSNHGGRQLDGAPATIDALPEIVAAVG----GRIEVLLDGGIRRGTDVLKALALGADAVLI 255 (299)
T ss_pred CCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhc----CCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 46666554321 22345778888876432 259999999999999999999999998765
No 306
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=27.18 E-value=5.3e+02 Score=32.51 Aligned_cols=69 Identities=14% Similarity=0.186 Sum_probs=52.5
Q ss_pred ccEEEEeCCCCCC-CH--HHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHH-cCCCEEEE------CCCCHHHHH
Q 001044 1089 FDLILMDCQMPKM-DG--YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG-VGMNAYLT------KPIDSERMV 1158 (1177)
Q Consensus 1089 ~DLIlmDi~MP~m-dG--~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~-aG~d~yL~------KP~~~~~L~ 1158 (1177)
=.+++.|+..-+| .| +|+++.+++. ..+|||+..+-...++..++++ .|+|+-+. +-++..++.
T Consensus 453 geil~t~id~DGt~~G~d~~l~~~v~~~------~~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~~~~~~~~~k 526 (538)
T PLN02617 453 GEILLNCIDCDGQGKGFDIELVKLVSDA------VTIPVIASSGAGTPEHFSDVFSKTNASAALAAGIFHRKEVPISSVK 526 (538)
T ss_pred CEEEEeeccccccccCcCHHHHHHHHhh------CCCCEEEECCCCCHHHHHHHHhcCCccEEEEEeeeccCCCCHHHHH
Confidence 3699999988765 45 5678888764 3599999999999999999997 56777655 556777777
Q ss_pred HHHHH
Q 001044 1159 STILR 1163 (1177)
Q Consensus 1159 ~~I~~ 1163 (1177)
..+..
T Consensus 527 ~~l~~ 531 (538)
T PLN02617 527 EHLLE 531 (538)
T ss_pred HHHHH
Confidence 66553
No 307
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=27.11 E-value=54 Score=45.25 Aligned_cols=50 Identities=20% Similarity=0.341 Sum_probs=30.7
Q ss_pred EEEEeCCCCCChhhHh--------hhhcccccCCCC---CCCC-CCccchhHHHHHHHHHHc
Q 001044 685 FEVDDTGCGIDQSKWE--------TVFESFEQGDPS---TTRK-HGGTGLGLSIVRTLVNKM 734 (1177)
Q Consensus 685 i~V~DtG~GI~~e~l~--------~IFe~F~q~d~s---~~~~-~~GtGLGLaIvk~IVe~~ 734 (1177)
|+|.|+|.|||-+.-+ -||....-+.+- ..+- .|-.|.|.++|.-+-+.+
T Consensus 96 IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aGgkfdd~~yKvSGGlhGVGasvvNalS~~f 157 (1388)
T PTZ00108 96 ISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTSSNYDDTEKRVTGGRNGFGAKLTNIFSTKF 157 (1388)
T ss_pred EEEEecCCcccCCCCCCCCCccceEEEEEeeccccCCCCceeeecccccCCccccccccceE
Confidence 8999999999976432 355444333221 1111 234799999887776654
No 308
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=26.98 E-value=5.6e+02 Score=31.06 Aligned_cols=102 Identities=15% Similarity=0.142 Sum_probs=60.8
Q ss_pred CCcEEEEEecChH---HHHHHHHHHhhc--CCEEE--EEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEE
Q 001044 1020 EGLRILLAEDTPL---IQIVACKILEKV--GATVS--VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLI 1092 (1177)
Q Consensus 1020 ~g~~ILIVdD~~~---~~~~l~~~L~~~--G~~v~--~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLI 1092 (1177)
.|..|+++|-..- ...-+...+++. +..+. -+.+.++|..+++. ..|.|
T Consensus 164 aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~a------------------------GaD~I 219 (404)
T PRK06843 164 AHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISV------------------------GADCL 219 (404)
T ss_pred cCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHc------------------------CCCEE
Confidence 3567888775322 222222333332 22332 36788888887752 46776
Q ss_pred EEeCCCCCC------------CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1093 LMDCQMPKM------------DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1093 lmDi~MP~m------------dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
..-+. |+- .-++++..+++.... ..+|||+=-+-....|..+|+.+||+.++.
T Consensus 220 ~vG~g-~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~---~~vpVIAdGGI~~~~Di~KALalGA~aVmv 284 (404)
T PRK06843 220 KVGIG-PGSICTTRIVAGVGVPQITAICDVYEVCKN---TNICIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_pred EECCC-CCcCCcceeecCCCCChHHHHHHHHHHHhh---cCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 64221 110 124444444443222 348999999999999999999999999874
No 309
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=26.77 E-value=7.8e+02 Score=26.02 Aligned_cols=117 Identities=12% Similarity=0.145 Sum_probs=64.3
Q ss_pred EEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCceEE
Q 001044 775 VVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVV 854 (1177)
Q Consensus 775 v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v 854 (1177)
+++.+.....+..+...+...|.....+.+.......+ .....+++
T Consensus 5 Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~----------------------------------~~~~~dlv 50 (229)
T PRK10161 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL----------------------------------NEPWPDLI 50 (229)
T ss_pred EEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH----------------------------------hccCCCEE
Confidence 45566666666667777776666554443333222111 01234678
Q ss_pred EEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001044 855 VIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 927 (1177)
Q Consensus 855 ~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 927 (1177)
++|..+.+.++......++..... ....+.+ ..............+.|.+.++.||+....+...+.....
T Consensus 51 ild~~l~~~~g~~~~~~l~~~~~~-~~~pvi~-ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~ 121 (229)
T PRK10161 51 LLDWMLPGGSGIQFIKHLKRESMT-RDIPVVM-LTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 (229)
T ss_pred EEeCCCCCCCHHHHHHHHHhcccc-CCCCEEE-EECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHh
Confidence 889888887664333333221100 1122222 2222333344455567888899999999988887776554
No 310
>PLN02823 spermine synthase
Probab=26.75 E-value=2.5e+02 Score=33.11 Aligned_cols=55 Identities=16% Similarity=0.235 Sum_probs=38.8
Q ss_pred cEEEEEecChHHHHHHHHHHhhc-----CCEEE-EEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEe
Q 001044 1022 LRILLAEDTPLIQIVACKILEKV-----GATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMD 1095 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~-----G~~v~-~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmD 1095 (1177)
.+|-+||=|+...++++..+... .-.+. ...||.+.++.. ...||+||+|
T Consensus 128 ~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~------------------------~~~yDvIi~D 183 (336)
T PLN02823 128 EKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR------------------------DEKFDVIIGD 183 (336)
T ss_pred CeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC------------------------CCCccEEEec
Confidence 47999999999999999988532 12333 456776655321 2479999999
Q ss_pred CCCCC
Q 001044 1096 CQMPK 1100 (1177)
Q Consensus 1096 i~MP~ 1100 (1177)
+--|.
T Consensus 184 ~~dp~ 188 (336)
T PLN02823 184 LADPV 188 (336)
T ss_pred CCCcc
Confidence 86553
No 311
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=26.73 E-value=5.4e+02 Score=30.10 Aligned_cols=29 Identities=24% Similarity=0.376 Sum_probs=25.8
Q ss_pred CcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1121 NIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1121 ~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
.+|||+--+-....+..+++.+|||..+.
T Consensus 197 ~vpVIA~GGI~~~~di~kAla~GA~~Vmi 225 (325)
T cd00381 197 GVPVIADGGIRTSGDIVKALAAGADAVML 225 (325)
T ss_pred CCcEEecCCCCCHHHHHHHHHcCCCEEEe
Confidence 48999877888899999999999999876
No 312
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=26.56 E-value=6.3e+02 Score=31.81 Aligned_cols=71 Identities=15% Similarity=0.132 Sum_probs=42.0
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001044 1087 PRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1166 (1177)
Q Consensus 1087 ~~~DLIlmDi~MP~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~ 1166 (1177)
+..|.++.-..=+.. -..++..+|+.. ++++||+-+.+ .++..+..++|+|..+. ..+++...+.+.+.
T Consensus 480 ~~a~~viv~~~~~~~-~~~iv~~~~~~~-----~~~~iiar~~~--~~~~~~l~~~Gad~vv~---p~~~~a~~i~~~l~ 548 (558)
T PRK10669 480 DCARWLLLTIPNGYE-AGEIVASAREKR-----PDIEIIARAHY--DDEVAYITERGANQVVM---GEREIARTMLELLE 548 (558)
T ss_pred cccCEEEEEcCChHH-HHHHHHHHHHHC-----CCCeEEEEECC--HHHHHHHHHcCCCEEEC---hHHHHHHHHHHHhc
Confidence 467877665432211 123555667653 35788887643 45666778899997772 34455666666655
Q ss_pred cC
Q 001044 1167 NM 1168 (1177)
Q Consensus 1167 ~~ 1168 (1177)
+.
T Consensus 549 ~~ 550 (558)
T PRK10669 549 TP 550 (558)
T ss_pred CC
Confidence 44
No 313
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=26.25 E-value=2.6e+02 Score=32.14 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=34.4
Q ss_pred HHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1104 YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1104 ~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
++.++++++... .++|||+..+-.+.+|..+++.+|||....
T Consensus 239 l~~v~~~~~~~~----~~ipIig~GGI~~~~da~~~l~aGA~~V~i 280 (299)
T cd02940 239 LRAVSQIARAPE----PGLPISGIGGIESWEDAAEFLLLGASVVQV 280 (299)
T ss_pred HHHHHHHHHhcC----CCCcEEEECCCCCHHHHHHHHHcCCChheE
Confidence 677777776431 369999999999999999999999997653
No 314
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=26.24 E-value=1.9e+02 Score=32.87 Aligned_cols=57 Identities=19% Similarity=0.103 Sum_probs=42.3
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecC------CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIVALTAH------AMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL 1164 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipIIalTa~------~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1164 (1177)
+.++.++++|+. ..+|+|+||=. ..+....+|.++|+|+.+.--+..++....+..+
T Consensus 78 ~~~~~~~~~r~~------~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~ 140 (263)
T CHL00200 78 KILSILSEVNGE------IKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVC 140 (263)
T ss_pred HHHHHHHHHhcC------CCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHH
Confidence 568899999853 34898888854 3345678999999999999888887766554444
No 315
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=26.14 E-value=5.5e+02 Score=28.69 Aligned_cols=85 Identities=18% Similarity=0.158 Sum_probs=58.7
Q ss_pred HHHHHHhhcCCEEEEEcCHHHHH-HHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHH-----HHHHH
Q 001044 1036 VACKILEKVGATVSVVPDGLQAV-EALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGY-----EATIE 1109 (1177)
Q Consensus 1036 ~l~~~L~~~G~~v~~a~nG~eAl-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~mdG~-----e~~r~ 1109 (1177)
....+|-+.||.|....+..-.+ +.+... =-..+|-+--|.-+|. +.++.
T Consensus 121 ~Aae~Lv~eGF~VlPY~~dD~v~arrLee~------------------------GcaavMPl~aPIGSg~G~~n~~~l~i 176 (262)
T COG2022 121 KAAEQLVKEGFVVLPYTTDDPVLARRLEEA------------------------GCAAVMPLGAPIGSGLGLQNPYNLEI 176 (262)
T ss_pred HHHHHHHhCCCEEeeccCCCHHHHHHHHhc------------------------CceEeccccccccCCcCcCCHHHHHH
Confidence 34567777899988654332222 222211 1246777777877763 45666
Q ss_pred HHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEEC
Q 001044 1110 IRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1150 (1177)
Q Consensus 1110 IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~K 1150 (1177)
|++. .++|||+=.+-..+++...++|.|+|+.|.-
T Consensus 177 iie~------a~VPviVDAGiG~pSdAa~aMElG~DaVL~N 211 (262)
T COG2022 177 IIEE------ADVPVIVDAGIGTPSDAAQAMELGADAVLLN 211 (262)
T ss_pred HHHh------CCCCEEEeCCCCChhHHHHHHhcccceeehh
Confidence 6653 2599999999999999999999999999863
No 316
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=26.04 E-value=2.2e+02 Score=31.42 Aligned_cols=109 Identities=16% Similarity=0.224 Sum_probs=63.7
Q ss_pred HHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEE-EEeCCCCCCCHHHH----HHHH
Q 001044 1036 VACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLI-LMDCQMPKMDGYEA----TIEI 1110 (1177)
Q Consensus 1036 ~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLI-lmDi~MP~mdG~e~----~r~I 1110 (1177)
.....+++.|..+-.+-+...-++.+...+ .....|+| +|..+ |+.+|-.+ +.+|
T Consensus 105 ~~l~~ik~~G~~~gval~p~t~~e~l~~~l-------------------~~~~vD~Vl~m~v~-pG~~gq~~~~~~~~ki 164 (228)
T PTZ00170 105 AVARKIREAGMKVGVAIKPKTPVEVLFPLI-------------------DTDLVDMVLVMTVE-PGFGGQSFMHDMMPKV 164 (228)
T ss_pred HHHHHHHHCCCeEEEEECCCCCHHHHHHHH-------------------ccchhhhHHhhhcc-cCCCCcEecHHHHHHH
Confidence 344555667877666644443344443221 01235644 66666 77777432 3444
Q ss_pred HhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEE-----EECCCCHHHHHHHHHHHhhc
Q 001044 1111 RKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAY-----LTKPIDSERMVSTILRLTKN 1167 (1177)
Q Consensus 1111 R~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~y-----L~KP~~~~~L~~~I~~l~~~ 1167 (1177)
++.... ... --|.+++.-..+....+.++|+|-+ |.|.-++++-...+++.++.
T Consensus 165 ~~~~~~--~~~-~~I~VdGGI~~~ti~~~~~aGad~iVvGsaI~~a~d~~~~~~~i~~~~~~ 223 (228)
T PTZ00170 165 RELRKR--YPH-LNIQVDGGINLETIDIAADAGANVIVAGSSIFKAKDRKQAIELLRESVQK 223 (228)
T ss_pred HHHHHh--ccc-CeEEECCCCCHHHHHHHHHcCCCEEEEchHHhCCCCHHHHHHHHHHHHHH
Confidence 443221 112 3488899999999999999999955 55555666666666665543
No 317
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=25.89 E-value=2.6e+02 Score=30.18 Aligned_cols=93 Identities=13% Similarity=0.234 Sum_probs=61.1
Q ss_pred HHHHHHhhcCCEEEE--EcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC-----CCHHHHHH
Q 001044 1036 VACKILEKVGATVSV--VPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK-----MDGYEATI 1108 (1177)
Q Consensus 1036 ~l~~~L~~~G~~v~~--a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~-----mdG~e~~r 1108 (1177)
.....|++.|+.+.. +..|...++.+.. -+||.|=+|..+-. .....+++
T Consensus 137 ~~i~~l~~~G~~ialddfg~~~~~~~~l~~-----------------------l~~d~iKld~~~~~~~~~~~~~~~~l~ 193 (241)
T smart00052 137 ATLQRLRELGVRIALDDFGTGYSSLSYLKR-----------------------LPVDLLKIDKSFVRDLQTDPEDEAIVQ 193 (241)
T ss_pred HHHHHHHHCCCEEEEeCCCCcHHHHHHHHh-----------------------CCCCeEEECHHHHhhhccChhHHHHHH
Confidence 445667888988765 4556666666653 37999999965421 11345566
Q ss_pred HHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCC----EEEECCCCHH
Q 001044 1109 EIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMN----AYLTKPIDSE 1155 (1177)
Q Consensus 1109 ~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d----~yL~KP~~~~ 1155 (1177)
.|...... ..+++| .++-.+.++...+.+.|++ .|+.||...+
T Consensus 194 ~l~~~~~~---~~~~vi-a~gVe~~~~~~~l~~~Gi~~~QG~~~~~p~~~~ 240 (241)
T smart00052 194 SIIELAQK---LGLQVV-AEGVETPEQLDLLRSLGCDYGQGYLFSRPLPLD 240 (241)
T ss_pred HHHHHHHH---CCCeEE-EecCCCHHHHHHHHHcCCCEEeeceeccCCCCC
Confidence 66655433 235554 5777888889999999997 3577887643
No 318
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=25.72 E-value=2.8e+02 Score=33.07 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=26.8
Q ss_pred CcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1121 NIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1121 ~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
.+|||+=-+-....|..+|+.+|||..+.
T Consensus 255 ~vpVIAdGGI~tg~di~kAlAlGAdaV~i 283 (369)
T TIGR01304 255 YVHVIADGGIETSGDLVKAIACGADAVVL 283 (369)
T ss_pred CceEEEeCCCCCHHHHHHHHHcCCCEeee
Confidence 59999999999999999999999999874
No 319
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=25.68 E-value=2.1e+02 Score=30.22 Aligned_cols=71 Identities=21% Similarity=0.175 Sum_probs=48.1
Q ss_pred EEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEEE
Q 001044 1048 VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVAL 1127 (1177)
Q Consensus 1048 v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~mdG~e~~r~IR~~~~~~~~~~ipIIal 1127 (1177)
...+.+-+|+.++++. .+|.|.+|-.-| -+=-++.+.+|... ++ ..|..
T Consensus 84 ~VEv~~~ee~~ea~~~------------------------g~d~I~lD~~~~-~~~~~~v~~l~~~~-----~~-v~ie~ 132 (169)
T PF01729_consen 84 EVEVENLEEAEEALEA------------------------GADIIMLDNMSP-EDLKEAVEELRELN-----PR-VKIEA 132 (169)
T ss_dssp EEEESSHHHHHHHHHT------------------------T-SEEEEES-CH-HHHHHHHHHHHHHT-----TT-SEEEE
T ss_pred EEEcCCHHHHHHHHHh------------------------CCCEEEecCcCH-HHHHHHHHHHhhcC-----Cc-EEEEE
Confidence 3568899999998863 599999997655 22233334443332 22 67888
Q ss_pred ecCCCHHHHHHHHHcCCCEEEE
Q 001044 1128 TAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1128 Ta~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
++.-..+...+..+.|+|.+-+
T Consensus 133 SGGI~~~ni~~ya~~gvD~isv 154 (169)
T PF01729_consen 133 SGGITLENIAEYAKTGVDVISV 154 (169)
T ss_dssp ESSSSTTTHHHHHHTT-SEEEE
T ss_pred ECCCCHHHHHHHHhcCCCEEEc
Confidence 9988888999999999988753
No 320
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=25.42 E-value=8.1e+02 Score=25.76 Aligned_cols=74 Identities=18% Similarity=0.174 Sum_probs=43.9
Q ss_pred CceEEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001044 850 PVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 927 (1177)
Q Consensus 850 p~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 927 (1177)
.+.++++|..+++.++....+.++. ......+. +..............+.|.+.++.||+....+...+.....
T Consensus 44 ~~dlvild~~l~~~~g~~l~~~lr~---~~~~~pii-~ls~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~ 117 (223)
T PRK10816 44 LPDIAIVDLGLPDEDGLSLIRRWRS---NDVSLPIL-VLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR 117 (223)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHh---cCCCCCEE-EEEcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHh
Confidence 3467888998888776433333321 11112222 22333333334455567888899999999988887776554
No 321
>PLN03029 type-a response regulator protein; Provisional
Probab=25.37 E-value=7.3e+02 Score=27.03 Aligned_cols=138 Identities=12% Similarity=0.100 Sum_probs=74.5
Q ss_pred cEEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCce
Q 001044 773 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 852 (1177)
Q Consensus 773 ~~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 852 (1177)
..+++.+.....+..+...++..|.....+.........+......... .+.+.. ........++.
T Consensus 9 ~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~-----p~~~~~---------~~~~~~~~~~d 74 (222)
T PLN03029 9 FHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSN-----PDTPSV---------SPNSHQEVEVN 74 (222)
T ss_pred ccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccc-----cccccc---------cccccccccCC
Confidence 4577788888888888888888887766655554444333211100000 000000 00011123467
Q ss_pred EEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHH
Q 001044 853 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAV 926 (1177)
Q Consensus 853 ~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~ 926 (1177)
++++|..++++++......++...... ...+++..............+.|...++.||+....+..+.....
T Consensus 75 lVllD~~mp~~~G~e~l~~ir~~~~~~--~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~~ 146 (222)
T PLN03029 75 LIITDYCMPGMTGYDLLKKIKESSSLR--NIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHMM 146 (222)
T ss_pred EEEEcCCCCCCCHHHHHHHHHhccccC--CCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHHHH
Confidence 889999999988755444333221111 112223333333333345566788889999999888866555443
No 322
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=25.20 E-value=2.5e+02 Score=31.99 Aligned_cols=70 Identities=16% Similarity=0.128 Sum_probs=0.0
Q ss_pred EEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEEEe
Q 001044 1049 SVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALT 1128 (1177)
Q Consensus 1049 ~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~mdG~e~~r~IR~~~~~~~~~~ipIIalT 1128 (1177)
..+.+-+||.++++. ..|.|.+| .|..-+=-++.+.+|+. .+++||++.-
T Consensus 188 Vev~t~eea~~A~~~------------------------gaD~I~ld-~~~p~~l~~~~~~~~~~-----~~~i~i~AsG 237 (272)
T cd01573 188 VEVDSLEEALAAAEA------------------------GADILQLD-KFSPEELAELVPKLRSL-----APPVLLAAAG 237 (272)
T ss_pred EEcCCHHHHHHHHHc------------------------CCCEEEEC-CCCHHHHHHHHHHHhcc-----CCCceEEEEC
Q ss_pred cCCCHHHHHHHHHcCCCEEEE
Q 001044 1129 AHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1129 a~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
+- ..+...+..++|+|.+..
T Consensus 238 GI-~~~ni~~~~~~Gvd~I~v 257 (272)
T cd01573 238 GI-NIENAAAYAAAGADILVT 257 (272)
T ss_pred CC-CHHHHHHHHHcCCcEEEE
No 323
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=25.09 E-value=5.8e+02 Score=29.25 Aligned_cols=59 Identities=12% Similarity=0.256 Sum_probs=44.6
Q ss_pred HHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEE------EECCCCHHHHHHHHHHHhhc
Q 001044 1103 GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAY------LTKPIDSERMVSTILRLTKN 1167 (1177)
Q Consensus 1103 G~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~y------L~KP~~~~~L~~~I~~l~~~ 1167 (1177)
.++.+++||+. .++|||+..+-.+.++..+++.+|||.+ +..|.-...+.+-+.+++..
T Consensus 222 ~l~~v~~i~~~------~~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~~~~i~~~l~~~~~~ 286 (301)
T PRK07259 222 ALRMVYQVYQA------VDIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDPYAFPKIIEGLEAYLDK 286 (301)
T ss_pred cHHHHHHHHHh------CCCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHHHHHHHHHHHHHHHH
Confidence 36778888763 2499999999999999999999998754 44676666666666666644
No 324
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=24.86 E-value=2.4e+02 Score=32.13 Aligned_cols=83 Identities=23% Similarity=0.365 Sum_probs=56.3
Q ss_pred cCCcEEEEEecChHHHHHHHHHHhhcCCEE----EEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEE
Q 001044 1019 LEGLRILLAEDTPLIQIVACKILEKVGATV----SVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILM 1094 (1177)
Q Consensus 1019 ~~g~~ILIVdD~~~~~~~l~~~L~~~G~~v----~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlm 1094 (1177)
+....++.+||...-+ .+|..+|... ....|-++....+...+. ...-=.++.
T Consensus 28 L~~~D~iaaEDTR~t~----~LL~~~~I~~~~is~h~hne~~~~~~li~~l~-------------------~g~~valVS 84 (275)
T COG0313 28 LKEVDVIAAEDTRVTR----KLLSHLGIKTPLISYHEHNEKEKLPKLIPLLK-------------------KGKSVALVS 84 (275)
T ss_pred HhhCCEEEEeccHHHH----HHHHHhCCCCceecccCCcHHHHHHHHHHHHh-------------------cCCeEEEEe
Confidence 4556799999997765 4555566532 223577777776654321 122346789
Q ss_pred eCCCCCCC--HHHHHHHHHhcccccCCCCcceEEEecCC
Q 001044 1095 DCQMPKMD--GYEATIEIRKSESEHGARNIPIVALTAHA 1131 (1177)
Q Consensus 1095 Di~MP~md--G~e~~r~IR~~~~~~~~~~ipIIalTa~~ 1131 (1177)
|--||..+ |+++.++.|+. .++|+.+-+-.
T Consensus 85 DAG~P~ISDPG~~LV~~a~~~-------gi~V~~lPG~s 116 (275)
T COG0313 85 DAGTPLISDPGYELVRAAREA-------GIRVVPLPGPS 116 (275)
T ss_pred cCCCCcccCccHHHHHHHHHc-------CCcEEecCCcc
Confidence 99999875 99999999963 37888887654
No 325
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=24.71 E-value=4.7e+02 Score=26.86 Aligned_cols=56 Identities=14% Similarity=0.163 Sum_probs=40.7
Q ss_pred CccEEEEeCCCCCCCHH-------HHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1088 RFDLILMDCQMPKMDGY-------EATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1088 ~~DLIlmDi~MP~mdG~-------e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
..|.|.++...+...+. ...+.++.. ..+||++..+-...++..++++.|+|.+..
T Consensus 136 g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~pi~~~GGi~~~~~~~~~~~~Gad~v~v 198 (200)
T cd04722 136 GVDEVGLGNGGGGGGGRDAVPIADLLLILAKRG------SKVPVIAGGGINDPEDAAEALALGADGVIV 198 (200)
T ss_pred CCCEEEEcCCcCCCCCccCchhHHHHHHHHHhc------CCCCEEEECCCCCHHHHHHHHHhCCCEEEe
Confidence 57999988877755432 334444432 358999988888778999999999998864
No 326
>PRK04457 spermidine synthase; Provisional
Probab=24.59 E-value=6.7e+02 Score=28.29 Aligned_cols=71 Identities=20% Similarity=0.143 Sum_probs=46.5
Q ss_pred CcEEEEEecChHHHHHHHHHHhhcC--CEEE-EEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEKVG--ATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ 1097 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~~G--~~v~-~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~ 1097 (1177)
+.+|..||=++.....++..+...+ ..+. ...|+.+.+... ..+||+|++|.-
T Consensus 90 ~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~------------------------~~~yD~I~~D~~ 145 (262)
T PRK04457 90 DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH------------------------RHSTDVILVDGF 145 (262)
T ss_pred CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC------------------------CCCCCEEEEeCC
Confidence 4589999999999999998876432 3343 346776665422 247999999962
Q ss_pred ----CCC-CCHHHHHHHHHhccc
Q 001044 1098 ----MPK-MDGYEATIEIRKSES 1115 (1177)
Q Consensus 1098 ----MP~-mdG~e~~r~IR~~~~ 1115 (1177)
||. +.--++.+.+++.-.
T Consensus 146 ~~~~~~~~l~t~efl~~~~~~L~ 168 (262)
T PRK04457 146 DGEGIIDALCTQPFFDDCRNALS 168 (262)
T ss_pred CCCCCccccCcHHHHHHHHHhcC
Confidence 221 122477777776543
No 327
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=24.26 E-value=4.8e+02 Score=27.98 Aligned_cols=103 Identities=18% Similarity=0.221 Sum_probs=59.0
Q ss_pred cEEEEEecChHHHHHHHHHHhh--cCC-------------EEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEK--VGA-------------TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDT 1086 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~--~G~-------------~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 1086 (1177)
.+..||-.-+..|+++.+++.- .|+ .|..+.+-++|++.+.+. ..
T Consensus 43 ~~yyiVtPl~~Q~~l~~ril~hW~~G~G~~yNp~R~eAl~~v~~~~sle~a~~~I~~~--------------------~G 102 (185)
T PF09936_consen 43 KGYYIVTPLEAQRELAERILGHWQEGYGAEYNPDRKEALSLVRVVDSLEEAIEDIEEE--------------------EG 102 (185)
T ss_dssp SEEEEE---HHHHHHHHHHHHHHHTSGGGGT-SSSHHHHTTEEEESSHHHHHHHHHHH--------------------HS
T ss_pred cCEEEecchHHHHHHHHHHHHhcccCCCcCcCcCHHHHHhHhccHhhHHHHHHHHHHH--------------------hC
Confidence 3789999999999999999863 333 388999999999998754 24
Q ss_pred CCccEEEEeCC-CCCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCC
Q 001044 1087 PRFDLILMDCQ-MPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPID 1153 (1177)
Q Consensus 1087 ~~~DLIlmDi~-MP~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~ 1153 (1177)
.+|-+|-+|.. -|..=+|+.+++.-.... ..+-+++=|+....++..+ ..||+..|+.
T Consensus 103 ~~P~~v~TsAr~~~~~is~~~lr~~l~~~~----~P~LllFGTGwGL~~ev~~-----~~D~iLePI~ 161 (185)
T PF09936_consen 103 KRPLLVATSARKYPNTISYAELRRMLEEED----RPVLLLFGTGWGLAPEVME-----QCDYILEPIR 161 (185)
T ss_dssp S--EEEE--SS--SS-B-HHHHHHHHHH------S-EEEEE--TT---HHHHT-----T-SEEB--TT
T ss_pred CCCEEEEecCcCCCCCcCHHHHHHHHhccC----CeEEEEecCCCCCCHHHHH-----hcCeeEcccc
Confidence 67999999998 566667877766542211 2244555588888776543 3468888874
No 328
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=24.15 E-value=8.1e+02 Score=25.80 Aligned_cols=72 Identities=10% Similarity=0.144 Sum_probs=43.5
Q ss_pred ceEEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001044 851 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 927 (1177)
Q Consensus 851 ~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 927 (1177)
.+++++|..++++++......++. ... ..+.++ .............+.|...++.||+....+...+.....
T Consensus 45 ~d~vl~d~~~~~~~g~~~~~~l~~---~~~-~~ii~l-t~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 116 (232)
T PRK10955 45 IDLLLLDVMMPKKNGIDTLKELRQ---THQ-TPVIML-TARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 (232)
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHh---cCC-CcEEEE-ECCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHh
Confidence 467888998888776433333221 111 222222 222233333445567888899999999988888877654
No 329
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=23.75 E-value=2.9e+02 Score=30.01 Aligned_cols=67 Identities=12% Similarity=0.106 Sum_probs=44.4
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEE--ECCCCHHHHHHHHHH
Q 001044 1091 LILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL--TKPIDSERMVSTILR 1163 (1177)
Q Consensus 1091 LIlmDi~MP~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL--~KP~~~~~L~~~I~~ 1163 (1177)
|=++|...-.-..++-.+.||+. ..+||++...-....+...|+++|+|..+ ..-++.+.+...+..
T Consensus 48 l~v~~~~~~~~g~~~~~~~i~~~------v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~ 116 (217)
T cd00331 48 ISVLTEPKYFQGSLEDLRAVREA------VSLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYEL 116 (217)
T ss_pred EEEEeCccccCCCHHHHHHHHHh------cCCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHH
Confidence 33455555455568888999875 25899987655566678899999999998 333444444444433
No 330
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=23.70 E-value=6.4e+02 Score=28.68 Aligned_cols=112 Identities=18% Similarity=0.257 Sum_probs=58.1
Q ss_pred CCcEEEEEecChH---HHHHHHHHHhhcCCEEEEEcCHH---H-HHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEE
Q 001044 1020 EGLRILLAEDTPL---IQIVACKILEKVGATVSVVPDGL---Q-AVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLI 1092 (1177)
Q Consensus 1020 ~g~~ILIVdD~~~---~~~~l~~~L~~~G~~v~~a~nG~---e-Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLI 1092 (1177)
.|.+|+++|-|.. .++.+....+..|..+.....+. + +.+.+... ....||+|
T Consensus 99 ~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~--------------------~~~~~D~V 158 (272)
T TIGR00064 99 QGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKA--------------------KARNIDVV 158 (272)
T ss_pred cCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHH--------------------HHCCCCEE
Confidence 3679999996652 34455566677786666544332 1 22333221 12469999
Q ss_pred EEeCCCCCCCH--HHHHHHHHhcccc-----cCCCCcceEEEecCCCHHHHHHHH----HcCCCEEEECCCC
Q 001044 1093 LMDCQMPKMDG--YEATIEIRKSESE-----HGARNIPIVALTAHAMNADEKKCL----GVGMNAYLTKPID 1153 (1177)
Q Consensus 1093 lmDi~MP~mdG--~e~~r~IR~~~~~-----~~~~~ipIIalTa~~~~~~~~~~l----~aG~d~yL~KP~~ 1153 (1177)
|.|.- +... -+...++++.... ...++-.++++.+....++...+. .+|.++.+.=-++
T Consensus 159 iIDT~--G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~~~~g~IlTKlD 228 (272)
T TIGR00064 159 LIDTA--GRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLD 228 (272)
T ss_pred EEeCC--CCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHHhhCCCCEEEEEccC
Confidence 99974 3222 2223333322110 011344577888876554444332 2567776654444
No 331
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=23.62 E-value=4.9e+02 Score=28.83 Aligned_cols=106 Identities=16% Similarity=0.287 Sum_probs=65.8
Q ss_pred HHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHH-------HHHH
Q 001044 1037 ACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYE-------ATIE 1109 (1177)
Q Consensus 1037 l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~mdG~e-------~~r~ 1109 (1177)
+...+++.|..+-.|-|...-++.+...+ ...|+|+.=.-=|+-.|-. =.++
T Consensus 102 ~l~~Ir~~g~k~GlalnP~T~~~~i~~~l---------------------~~vD~VlvMtV~PGf~GQ~fi~~~l~KI~~ 160 (223)
T PRK08745 102 TIQLIKSHGCQAGLVLNPATPVDILDWVL---------------------PELDLVLVMSVNPGFGGQAFIPSALDKLRA 160 (223)
T ss_pred HHHHHHHCCCceeEEeCCCCCHHHHHHHH---------------------hhcCEEEEEEECCCCCCccccHHHHHHHHH
Confidence 34667778988887766665555554332 2477665544457776633 3344
Q ss_pred HHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEE-----EECCCCHHHHHHHHHHHh
Q 001044 1110 IRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAY-----LTKPIDSERMVSTILRLT 1165 (1177)
Q Consensus 1110 IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~y-----L~KP~~~~~L~~~I~~l~ 1165 (1177)
+|+.....+ . -..|.+-+.-..+...+|.++|+|-+ |.|.-++.+-...+++.+
T Consensus 161 l~~~~~~~~-~-~~~IeVDGGI~~eti~~l~~aGaDi~V~GSaiF~~~d~~~~~~~lr~~~ 219 (223)
T PRK08745 161 IRKKIDALG-K-PIRLEIDGGVKADNIGAIAAAGADTFVAGSAIFNAPDYAQVIAQMRAAV 219 (223)
T ss_pred HHHHHHhcC-C-CeeEEEECCCCHHHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHHHH
Confidence 444422221 1 24588899999999999999999955 555445666555555543
No 332
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=23.44 E-value=1.3e+02 Score=34.56 Aligned_cols=40 Identities=13% Similarity=0.051 Sum_probs=30.8
Q ss_pred HHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEE
Q 001044 1105 EATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1148 (1177)
Q Consensus 1105 e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL 1148 (1177)
..++++|+... .++|||+..+-.+.+|..+++.+|||...
T Consensus 231 ~~v~~~~~~~~----~~ipIig~GGI~s~~da~e~l~aGA~~Vq 270 (294)
T cd04741 231 GNVRTFRRLLP----SEIQIIGVGGVLDGRGAFRMRLAGASAVQ 270 (294)
T ss_pred HHHHHHHHhcC----CCCCEEEeCCCCCHHHHHHHHHcCCCcee
Confidence 44455554321 25999999999999999999999998764
No 333
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=23.31 E-value=5.8e+02 Score=30.51 Aligned_cols=111 Identities=13% Similarity=0.064 Sum_probs=61.7
Q ss_pred CcEEEEEecChHHHHHHHHHHhhcCCEE---------------EEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEKVGATV---------------SVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPD 1085 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~~G~~v---------------~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~ 1085 (1177)
+.+++||-|.+.-...+..++++.|... ..+..-.+.-+.+.
T Consensus 262 ~~~liivG~g~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~----------------------- 318 (425)
T PRK05749 262 NLLLILVPRHPERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYA----------------------- 318 (425)
T ss_pred CcEEEEcCCChhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHH-----------------------
Confidence 4678899988865466778888877643 22222233334443
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHH-HcCCCEEEECCCCHHHHHHHHHHH
Q 001044 1086 TPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL-GVGMNAYLTKPIDSERMVSTILRL 1164 (1177)
Q Consensus 1086 ~~~~DLIlmDi~MP~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l-~aG~d~yL~KP~~~~~L~~~I~~l 1164 (1177)
.-|++++=-.....-|.-.++.+. ..+|||+--......+..+.+ +. +++..|-+.++|.++|..+
T Consensus 319 --~aDi~~v~~S~~e~~g~~~lEAma--------~G~PVI~g~~~~~~~e~~~~~~~~---g~~~~~~d~~~La~~l~~l 385 (425)
T PRK05749 319 --IADIAFVGGSLVKRGGHNPLEPAA--------FGVPVISGPHTFNFKEIFERLLQA---GAAIQVEDAEDLAKAVTYL 385 (425)
T ss_pred --hCCEEEECCCcCCCCCCCHHHHHH--------hCCCEEECCCccCHHHHHHHHHHC---CCeEEECCHHHHHHHHHHH
Confidence 368866622211112322222222 348998632222333433333 33 4666688999999999988
Q ss_pred hhc
Q 001044 1165 TKN 1167 (1177)
Q Consensus 1165 ~~~ 1167 (1177)
+.+
T Consensus 386 l~~ 388 (425)
T PRK05749 386 LTD 388 (425)
T ss_pred hcC
Confidence 753
No 334
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=23.11 E-value=1e+02 Score=33.17 Aligned_cols=38 Identities=13% Similarity=0.263 Sum_probs=31.8
Q ss_pred EEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHH
Q 001044 1024 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEAL 1061 (1177)
Q Consensus 1024 ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l 1061 (1177)
|||||.....-.-+...|++.|+++.+..+.+..++.+
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~ 39 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDI 39 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHH
Confidence 89999999998999999999999999988775444444
No 335
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=23.08 E-value=4.4e+02 Score=29.93 Aligned_cols=71 Identities=20% Similarity=0.132 Sum_probs=48.0
Q ss_pred EEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEE
Q 001044 1047 TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVA 1126 (1177)
Q Consensus 1047 ~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~mdG~e~~r~IR~~~~~~~~~~ipIIa 1126 (1177)
-...+.+-+|+.+++.. .+|+|.+|-.-| |-++++.+.-.. .+++||+
T Consensus 184 I~vev~t~eea~~A~~~------------------------gaD~I~ld~~~~-----e~l~~~v~~i~~--~~~i~i~- 231 (269)
T cd01568 184 IEVEVETLEEAEEALEA------------------------GADIIMLDNMSP-----EELKEAVKLLKG--LPRVLLE- 231 (269)
T ss_pred EEEecCCHHHHHHHHHc------------------------CCCEEEECCCCH-----HHHHHHHHHhcc--CCCeEEE-
Confidence 34567899999998752 589999997655 334443332111 1356755
Q ss_pred EecCCCHHHHHHHHHcCCCEEEE
Q 001044 1127 LTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1127 lTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
.++.-..+...+..++|+|.+-+
T Consensus 232 asGGIt~~ni~~~a~~Gad~Isv 254 (269)
T cd01568 232 ASGGITLENIRAYAETGVDVIST 254 (269)
T ss_pred EECCCCHHHHHHHHHcCCCEEEE
Confidence 46667788889999999998753
No 336
>PRK13856 two-component response regulator VirG; Provisional
Probab=22.97 E-value=9.6e+02 Score=25.77 Aligned_cols=73 Identities=18% Similarity=0.149 Sum_probs=42.9
Q ss_pred CceEEEEEecccccChhHHHHHhhhhhhhhccceeeeeecc-CCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001044 850 PVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNH-QTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 927 (1177)
Q Consensus 850 p~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 927 (1177)
++.++++|..+++.++..+-..++ ... . ....+... ...........+.|.+.++.||+....+...+.....
T Consensus 45 ~~dlvi~d~~l~~~~g~~l~~~i~---~~~-~-~pii~lt~~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~ 118 (241)
T PRK13856 45 TVDVVVVDLNLGREDGLEIVRSLA---TKS-D-VPIIIISGDRLEEADKVVALELGATDFIAKPFGTREFLARIRVALR 118 (241)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH---hcC-C-CcEEEEECCCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHh
Confidence 356888899888887644333322 111 1 12222222 2122233445567888899999999888877766554
No 337
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=22.97 E-value=9.3e+02 Score=25.62 Aligned_cols=96 Identities=20% Similarity=0.120 Sum_probs=57.4
Q ss_pred HHHHHHHhhcCCEEEEE-cCH----HHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC-------C
Q 001044 1035 IVACKILEKVGATVSVV-PDG----LQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM-------D 1102 (1177)
Q Consensus 1035 ~~l~~~L~~~G~~v~~a-~nG----~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~m-------d 1102 (1177)
..+....++.|..+... .+. +++..+.+ ...|+|-+. |+. .
T Consensus 92 ~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~------------------------~g~d~v~~~---pg~~~~~~~~~ 144 (206)
T TIGR03128 92 KGAVKAAKKHGKEVQVDLINVKDKVKRAKELKE------------------------LGADYIGVH---TGLDEQAKGQN 144 (206)
T ss_pred HHHHHHHHHcCCEEEEEecCCCChHHHHHHHHH------------------------cCCCEEEEc---CCcCcccCCCC
Confidence 44555566788887765 354 33333322 257888664 332 2
Q ss_pred HHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE-----CCCCHHHHHHHHHH
Q 001044 1103 GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT-----KPIDSERMVSTILR 1163 (1177)
Q Consensus 1103 G~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~-----KP~~~~~L~~~I~~ 1163 (1177)
+.+..+++++.-+ .+.|++++--..+...+++++|+|.++. +.-++.+....+++
T Consensus 145 ~~~~i~~l~~~~~------~~~i~v~GGI~~~n~~~~~~~Ga~~v~vGsai~~~~d~~~~~~~l~~ 204 (206)
T TIGR03128 145 PFEDLQTILKLVK------EARVAVAGGINLDTIPDVIKLGPDIVIVGGAITKAADPAEAARQIRK 204 (206)
T ss_pred CHHHHHHHHHhcC------CCcEEEECCcCHHHHHHHHHcCCCEEEEeehhcCCCCHHHHHHHHHh
Confidence 4555666665321 2446667777888899999999997765 44455555555443
No 338
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=22.68 E-value=1.8e+02 Score=33.22 Aligned_cols=55 Identities=5% Similarity=0.154 Sum_probs=41.9
Q ss_pred HHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Q 001044 1104 YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL 1164 (1177)
Q Consensus 1104 ~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1164 (1177)
.++.+.+|+..+ +-.+|.++.++. ++..++.++|+|..+..++.++.|...+..+
T Consensus 175 ~~~v~~aR~~~~-----~~~~Igvsv~tl-eea~~A~~~gaDyI~lD~~~~e~l~~~~~~~ 229 (277)
T PRK08072 175 TKAVTSVREKLG-----HMVKIEVETETE-EQVREAVAAGADIIMFDNRTPDEIREFVKLV 229 (277)
T ss_pred HHHHHHHHHhCC-----CCCEEEEEeCCH-HHHHHHHHcCCCEEEECCCCHHHHHHHHHhc
Confidence 356667776532 235799999765 5677889999999999999999988877644
No 339
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=22.67 E-value=2.2e+02 Score=24.74 Aligned_cols=43 Identities=19% Similarity=0.213 Sum_probs=29.8
Q ss_pred HHHHhHHhhhhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH
Q 001044 498 FLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALL 545 (1177)
Q Consensus 498 Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~ 545 (1177)
.+...-||+.+=|..|.|++++ . ..++..+++..+........
T Consensus 15 ~lR~~RHD~~NhLqvI~gllql-g----~~~~a~eYi~~~~~~~~~~s 57 (62)
T PF14689_consen 15 SLRAQRHDFLNHLQVIYGLLQL-G----KYEEAKEYIKELSKDLQQES 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-T-----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHC-C----CHHHHHHHHHHHHHHHHHHH
Confidence 3456689999999999999995 1 13455566666665555543
No 340
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=22.62 E-value=9.2e+02 Score=25.40 Aligned_cols=74 Identities=16% Similarity=0.162 Sum_probs=44.4
Q ss_pred CceEEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001044 850 PVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 927 (1177)
Q Consensus 850 p~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 927 (1177)
.+.++++|..++++++..+.+.++. ......+ .+..............+.|.+.++.||+....+...+.....
T Consensus 44 ~~dlvild~~~~~~~g~~~~~~lr~---~~~~~pi-i~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 117 (227)
T PRK09836 44 DYDLIILDIMLPDVNGWDIVRMLRS---ANKGMPI-LLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLR 117 (227)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHh---cCCCCCE-EEEEcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 3467888998888776443333321 1111222 223333333344455667888899999999988887776553
No 341
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=22.60 E-value=5.5e+02 Score=29.79 Aligned_cols=108 Identities=15% Similarity=0.227 Sum_probs=66.1
Q ss_pred CcEEEEEecChHHHHHHHHHHhhcCCE--EEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEKVGAT--VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1098 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~~G~~--v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~M 1098 (1177)
+.+++++-|.+. +..+...++..|.. +.......+..+.+. ..|+.++=-.
T Consensus 229 ~~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~-------------------------~adi~v~pS~- 281 (374)
T TIGR03088 229 RLRLVIVGDGPA-RGACEQMVRAAGLAHLVWLPGERDDVPALMQ-------------------------ALDLFVLPSL- 281 (374)
T ss_pred ceEEEEecCCch-HHHHHHHHHHcCCcceEEEcCCcCCHHHHHH-------------------------hcCEEEeccc-
Confidence 467888877654 45567777776653 443333334444443 3577664211
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001044 1099 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1167 (1177)
Q Consensus 1099 P~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~ 1167 (1177)
.+-=|.-+++.+. ..+|||+ |.... ..+.++-|-++++..|-+.+++.++|..++..
T Consensus 282 ~Eg~~~~~lEAma--------~G~Pvv~-s~~~g---~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~ 338 (374)
T TIGR03088 282 AEGISNTILEAMA--------SGLPVIA-TAVGG---NPELVQHGVTGALVPPGDAVALARALQPYVSD 338 (374)
T ss_pred cccCchHHHHHHH--------cCCCEEE-cCCCC---cHHHhcCCCceEEeCCCCHHHHHHHHHHHHhC
Confidence 2222445555543 3489987 43332 23455678889999999999999999988753
No 342
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=22.35 E-value=8.6e+02 Score=27.41 Aligned_cols=43 Identities=9% Similarity=0.121 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECC
Q 001044 1103 GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKP 1151 (1177)
Q Consensus 1103 G~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP 1151 (1177)
-.+.++++|+. ...||++=-+-.+.++..++.++|+|.++.-.
T Consensus 186 ~~~~i~~lr~~------~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 186 LNELVKRLKAY------SAKPVLVGFGISKPEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred HHHHHHHHHhh------cCCCEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 36677777764 23687764455568899999999999999864
No 343
>PRK10060 RNase II stability modulator; Provisional
Probab=22.10 E-value=5e+02 Score=33.42 Aligned_cols=103 Identities=17% Similarity=0.193 Sum_probs=72.1
Q ss_pred HHHHHHhhcCCEEEE--EcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC----C-CCCHHHHHH
Q 001044 1036 VACKILEKVGATVSV--VPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM----P-KMDGYEATI 1108 (1177)
Q Consensus 1036 ~l~~~L~~~G~~v~~--a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~M----P-~mdG~e~~r 1108 (1177)
.....|++.|+.+.. +..|-..+..+.. -++|.|=+|-.. . ......+++
T Consensus 545 ~~l~~L~~~G~~ialDdfGtg~ssl~~L~~-----------------------l~~d~iKiD~sfv~~i~~~~~~~~~v~ 601 (663)
T PRK10060 545 SVIQQFSQLGAQVHLDDFGTGYSSLSQLAR-----------------------FPIDAIKLDQSFVRDIHKQPVSQSLVR 601 (663)
T ss_pred HHHHHHHHCCCEEEEECCCCchhhHHHHHh-----------------------CCCCEEEECHHHHhccccCcchHHHHH
Confidence 345677889998776 6778888888864 379999999432 2 233556666
Q ss_pred HHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCC----EEEECCCCHHHHHHHHHHHh
Q 001044 1109 EIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMN----AYLTKPIDSERMVSTILRLT 1165 (1177)
Q Consensus 1109 ~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d----~yL~KP~~~~~L~~~I~~l~ 1165 (1177)
.|-..... ..+.+|| .+-.+.+....+.+.|+| .|+.||...+++...+.+..
T Consensus 602 ~ii~~a~~---lg~~viA-eGVEt~~q~~~l~~~G~d~~QGy~~~~P~~~~~~~~~l~~~~ 658 (663)
T PRK10060 602 AIVAVAQA---LNLQVIA-EGVETAKEDAFLTKNGVNERQGFLFAKPMPAVAFERWYKRYL 658 (663)
T ss_pred HHHHHHHH---CCCcEEE-ecCCCHHHHHHHHHcCCCEEecCccCCCCCHHHHHHHHHhhh
Confidence 66554332 2366664 567777788888899997 35889999999988776543
No 344
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=22.08 E-value=2.2e+02 Score=32.48 Aligned_cols=55 Identities=13% Similarity=0.175 Sum_probs=41.9
Q ss_pred HHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Q 001044 1104 YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL 1164 (1177)
Q Consensus 1104 ~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1164 (1177)
-+++++.|+.. ++.+-|=+=. .+.++..+++++|+|-.+.=-++++++.+++..+
T Consensus 175 ~~Av~~aR~~~-----~~~~kIEVEv-esle~~~eAl~agaDiImLDNm~~e~~~~av~~l 229 (280)
T COG0157 175 TEAVRRARAAA-----PFTKKIEVEV-ESLEEAEEALEAGADIIMLDNMSPEELKEAVKLL 229 (280)
T ss_pred HHHHHHHHHhC-----CCCceEEEEc-CCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHh
Confidence 35777777653 3455444433 4467888999999999999999999999999885
No 345
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=21.92 E-value=3.7e+02 Score=30.04 Aligned_cols=68 Identities=16% Similarity=0.208 Sum_probs=47.4
Q ss_pred Ccc-EEEEeCCC-CCCCH--HHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHc-CCCEEEE------CCCCHHH
Q 001044 1088 RFD-LILMDCQM-PKMDG--YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV-GMNAYLT------KPIDSER 1156 (1177)
Q Consensus 1088 ~~D-LIlmDi~M-P~mdG--~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~a-G~d~yL~------KP~~~~~ 1156 (1177)
.++ +|++|+.= ..+.| +++++++++. ..+|||+--+-.+.++..++++. |+++.+. .-++.++
T Consensus 166 g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~------~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~~~~~ 239 (253)
T PRK02083 166 GAGEILLTSMDRDGTKNGYDLELTRAVSDA------VNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEITIGE 239 (253)
T ss_pred CCCEEEEcCCcCCCCCCCcCHHHHHHHHhh------CCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCCCHHH
Confidence 454 67766541 12223 6777888764 24899999999999999999985 9998887 4466666
Q ss_pred HHHHH
Q 001044 1157 MVSTI 1161 (1177)
Q Consensus 1157 L~~~I 1161 (1177)
+.+.+
T Consensus 240 ~~~~~ 244 (253)
T PRK02083 240 LKAYL 244 (253)
T ss_pred HHHHH
Confidence 65544
No 346
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=21.86 E-value=8e+02 Score=29.32 Aligned_cols=55 Identities=11% Similarity=0.164 Sum_probs=36.8
Q ss_pred CCccEEEEeCC----C---CCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1087 PRFDLILMDCQ----M---PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1087 ~~~DLIlmDi~----M---P~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
...|+|.++-. + +.-+-.++.+.+++. ++|||+ -.-.+.++..+++++|+|..+.
T Consensus 153 aGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~-------~ipVIa-G~V~t~e~A~~l~~aGAD~V~V 214 (368)
T PRK08649 153 AGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYEL-------DVPVIV-GGCVTYTTALHLMRTGAAGVLV 214 (368)
T ss_pred CCCCEEEEeccchhhhccCCcCCHHHHHHHHHHC-------CCCEEE-eCCCCHHHHHHHHHcCCCEEEE
Confidence 36899999753 2 222445555555531 489988 3345677888899999999865
No 347
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=21.86 E-value=9.1e+02 Score=25.07 Aligned_cols=73 Identities=14% Similarity=0.089 Sum_probs=42.8
Q ss_pred ceEEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001044 851 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 927 (1177)
Q Consensus 851 ~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 927 (1177)
..++++|..+++.++...-..+.. ......+.+ ..............+.|...++.||+....+...+.....
T Consensus 45 ~d~illd~~~~~~~g~~~~~~l~~---~~~~~pii~-ls~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 117 (222)
T PRK10643 45 YSLVVLDLGLPDEDGLHLLRRWRQ---KKYTLPVLI-LTARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIR 117 (222)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHh---cCCCCcEEE-EECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHh
Confidence 467888988888776433332221 111222222 2222333334445567888899999999988887776554
No 348
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=21.82 E-value=2.2e+02 Score=32.41 Aligned_cols=64 Identities=13% Similarity=0.221 Sum_probs=45.6
Q ss_pred HHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCCCCCCC
Q 001044 1105 EATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEATG 1174 (1177)
Q Consensus 1105 e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~~~~~~~ 1174 (1177)
++.+++|+..+ +-.+|.++.++. ++..++.++|+|....=|+.++.+...+..+-...+-+++|
T Consensus 166 ~av~~~r~~~~-----~~~~Igvev~t~-eea~~A~~~gaDyI~ld~~~~e~lk~~v~~~~~~ipi~AsG 229 (265)
T TIGR00078 166 KAVKRARAAAP-----FALKIEVEVESL-EEAEEAAEAGADIIMLDNMKPEEIKEAVQLLKGRVLLEASG 229 (265)
T ss_pred HHHHHHHHhCC-----CCCeEEEEeCCH-HHHHHHHHcCCCEEEECCCCHHHHHHHHHHhcCCCcEEEEC
Confidence 35667776532 234688888765 56788999999999999999999998887653334444544
No 349
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=21.77 E-value=2.9e+02 Score=29.54 Aligned_cols=32 Identities=22% Similarity=0.169 Sum_probs=28.1
Q ss_pred EEEEecChHHHHHHHHHHhhcCCEEEEEcCHH
Q 001044 1024 ILLAEDTPLIQIVACKILEKVGATVSVVPDGL 1055 (1177)
Q Consensus 1024 ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~ 1055 (1177)
|+|+|=-.-|-..+.+.|++.|+.+..+.+..
T Consensus 1 i~i~d~g~~~~~~~~~~l~~~g~~v~v~~~~~ 32 (198)
T cd01748 1 IAIIDYGMGNLRSVANALERLGAEVIITSDPE 32 (198)
T ss_pred CEEEeCCCChHHHHHHHHHHCCCeEEEEcChH
Confidence 57888888899999999999999999988754
No 350
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=21.71 E-value=4.2e+02 Score=29.25 Aligned_cols=55 Identities=20% Similarity=0.268 Sum_probs=42.7
Q ss_pred ccEEEEeCCCCCCC-H--HHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1089 FDLILMDCQMPKMD-G--YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1089 ~DLIlmDi~MP~md-G--~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
-.+|++|+.=-++. | +|+++++++.. ++|+|+--+-.+.+|..++.+.|+++.+.
T Consensus 162 ~~ii~tdi~~dGt~~G~d~~~~~~l~~~~------~~~viasGGv~~~~Dl~~l~~~G~~gviv 219 (229)
T PF00977_consen 162 GEIILTDIDRDGTMQGPDLELLKQLAEAV------NIPVIASGGVRSLEDLRELKKAGIDGVIV 219 (229)
T ss_dssp SEEEEEETTTTTTSSS--HHHHHHHHHHH------SSEEEEESS--SHHHHHHHHHTTECEEEE
T ss_pred cEEEEeeccccCCcCCCCHHHHHHHHHHc------CCCEEEecCCCCHHHHHHHHHCCCcEEEE
Confidence 46899999865442 3 67888887652 48999999999999999999999999875
No 351
>PRK05637 anthranilate synthase component II; Provisional
Probab=21.69 E-value=2.6e+02 Score=30.43 Aligned_cols=34 Identities=9% Similarity=0.161 Sum_probs=29.5
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHH
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGL 1055 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~ 1055 (1177)
.+||++|-..-+-.-+...|++.|+.+.++.+..
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~ 35 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTV 35 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCC
Confidence 3799999988888889999999999999887753
No 352
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=21.62 E-value=2.5e+02 Score=29.93 Aligned_cols=32 Identities=16% Similarity=0.334 Sum_probs=27.3
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCCEEEEEcC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPD 1053 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~n 1053 (1177)
+||||+|-....-.-+...|++.|+++.++..
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~~ 33 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVNV 33 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEEC
Confidence 58999998877777799999999998888764
No 353
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=21.61 E-value=4.9e+02 Score=29.42 Aligned_cols=70 Identities=19% Similarity=0.227 Sum_probs=44.9
Q ss_pred cEEEEEecChHHHHHHHHHHhhcC-----CEEE-EEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEe
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVG-----ATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMD 1095 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G-----~~v~-~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmD 1095 (1177)
.+|.+||-++...+.++..+...+ -.+. ...||.+.++.. ..+||+|++|
T Consensus 97 ~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~------------------------~~~yDvIi~D 152 (270)
T TIGR00417 97 EKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT------------------------ENTFDVIIVD 152 (270)
T ss_pred ceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC------------------------CCCccEEEEe
Confidence 479999999999888888875432 1222 235665554422 2479999999
Q ss_pred CCCCCCC-----HHHHHHHHHhccc
Q 001044 1096 CQMPKMD-----GYEATIEIRKSES 1115 (1177)
Q Consensus 1096 i~MP~md-----G~e~~r~IR~~~~ 1115 (1177)
.--|... .-|+.+.+++.-.
T Consensus 153 ~~~~~~~~~~l~~~ef~~~~~~~L~ 177 (270)
T TIGR00417 153 STDPVGPAETLFTKEFYELLKKALN 177 (270)
T ss_pred CCCCCCcccchhHHHHHHHHHHHhC
Confidence 8655432 2356666666443
No 354
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=21.43 E-value=6.1e+02 Score=29.93 Aligned_cols=57 Identities=14% Similarity=0.117 Sum_probs=40.3
Q ss_pred CCccEEEEeCCCCCCCH-HHHHHHHHhcccccCCCCcceEEEec-CCCHHHHHHHHHcCCCEEEEC
Q 001044 1087 PRFDLILMDCQMPKMDG-YEATIEIRKSESEHGARNIPIVALTA-HAMNADEKKCLGVGMNAYLTK 1150 (1177)
Q Consensus 1087 ~~~DLIlmDi~MP~mdG-~e~~r~IR~~~~~~~~~~ipIIalTa-~~~~~~~~~~l~aG~d~yL~K 1150 (1177)
..+|+|++|+-=--... .+.+++||+.. +..+||+ + -...++...++++|||....=
T Consensus 120 ~~~d~iviD~AhGhs~~~i~~ik~ir~~~-----p~~~via--GNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 120 PQLKFICLDVANGYSEHFVEFVKLVREAF-----PEHTIMA--GNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHHhhC-----CCCeEEE--ecccCHHHHHHHHHcCCCEEEEc
Confidence 35999999987544333 67888898753 3344443 4 456788889999999998644
No 355
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=21.35 E-value=8e+02 Score=29.86 Aligned_cols=115 Identities=14% Similarity=0.127 Sum_probs=68.2
Q ss_pred EEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCceE
Q 001044 774 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 853 (1177)
Q Consensus 774 ~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 853 (1177)
.+++.+.....+..+...+...|.....+.+...+...+ ...++++
T Consensus 5 ~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l----------------------------------~~~~~Dl 50 (469)
T PRK10923 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEAL----------------------------------ASKTPDV 50 (469)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH----------------------------------hcCCCCE
Confidence 456677777777778888887776654443333222211 0124568
Q ss_pred EEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHH
Q 001044 854 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAV 926 (1177)
Q Consensus 854 v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~ 926 (1177)
+++|..++++++..+.+.+.. ......+.++ .............+.|...++.||+....+...+....
T Consensus 51 vllD~~lp~~dgl~~l~~ir~---~~~~~pvIvl-t~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l 119 (469)
T PRK10923 51 LLSDIRMPGMDGLALLKQIKQ---RHPMLPVIIM-TAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI 119 (469)
T ss_pred EEECCCCCCCCHHHHHHHHHh---hCCCCeEEEE-ECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHH
Confidence 889999988876443333321 1122222223 33333344455667888889999999988888776554
No 356
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=21.34 E-value=2.6e+02 Score=34.29 Aligned_cols=55 Identities=20% Similarity=0.297 Sum_probs=39.7
Q ss_pred CccEEEEeCCCCC-CCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEE
Q 001044 1088 RFDLILMDCQMPK-MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1148 (1177)
Q Consensus 1088 ~~DLIlmDi~MP~-mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL 1148 (1177)
.+|+|.+|+.-+. ..-.+.+++||+. ++++|||+ -.-.+.++...+.++|+|...
T Consensus 236 G~d~I~vd~a~g~~~~~~~~i~~i~~~-----~~~~~vi~-G~v~t~~~a~~l~~aGad~i~ 291 (450)
T TIGR01302 236 GVDVIVIDSSHGHSIYVIDSIKEIKKT-----YPDLDIIA-GNVATAEQAKALIDAGADGLR 291 (450)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHHHh-----CCCCCEEE-EeCCCHHHHHHHHHhCCCEEE
Confidence 6999999994432 2457778888864 24688888 223456778889999999984
No 357
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=21.29 E-value=6.8e+02 Score=28.49 Aligned_cols=68 Identities=18% Similarity=0.033 Sum_probs=47.9
Q ss_pred EEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEE
Q 001044 1047 TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVA 1126 (1177)
Q Consensus 1047 ~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~mdG~e~~r~IR~~~~~~~~~~ipIIa 1126 (1177)
-...+.|-+|+.++++. ..|+|.+|-.- .|.++++.+... .++||++
T Consensus 185 Igvev~s~eea~~A~~~------------------------gaDyI~ld~~~-----~e~l~~~~~~~~----~~ipi~A 231 (268)
T cd01572 185 IEVEVETLEQLKEALEA------------------------GADIIMLDNMS-----PEELREAVALLK----GRVLLEA 231 (268)
T ss_pred EEEEECCHHHHHHHHHc------------------------CCCEEEECCcC-----HHHHHHHHHHcC----CCCcEEE
Confidence 34678999999888752 58999999542 466666655321 1478776
Q ss_pred EecCCCHHHHHHHHHcCCCEEE
Q 001044 1127 LTAHAMNADEKKCLGVGMNAYL 1148 (1177)
Q Consensus 1127 lTa~~~~~~~~~~l~aG~d~yL 1148 (1177)
.- .-..+......++|+|..-
T Consensus 232 iG-GI~~~ni~~~a~~Gvd~Ia 252 (268)
T cd01572 232 SG-GITLENIRAYAETGVDYIS 252 (268)
T ss_pred EC-CCCHHHHHHHHHcCCCEEE
Confidence 54 5567788899999998764
No 358
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=21.27 E-value=8.2e+02 Score=29.74 Aligned_cols=106 Identities=19% Similarity=0.290 Sum_probs=64.1
Q ss_pred CcEEEEEecChHHHHHHHHHHhhcCCEEEEE--cCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEKVGATVSVV--PDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1098 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a--~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~M 1098 (1177)
+.+++||-|.+. +..++.+.+.. .|... -..++..+.+. ..|+.++=-.
T Consensus 290 ~~~l~ivG~G~~-~~~l~~~~~~~--~V~f~G~v~~~ev~~~~~-------------------------~aDv~V~pS~- 340 (465)
T PLN02871 290 GARLAFVGDGPY-REELEKMFAGT--PTVFTGMLQGDELSQAYA-------------------------SGDVFVMPSE- 340 (465)
T ss_pred CcEEEEEeCChH-HHHHHHHhccC--CeEEeccCCHHHHHHHHH-------------------------HCCEEEECCc-
Confidence 468888888764 34455555433 33332 34466666664 3677775321
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHc---CCCEEEECCCCHHHHHHHHHHHhhc
Q 001044 1099 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV---GMNAYLTKPIDSERMVSTILRLTKN 1167 (1177)
Q Consensus 1099 P~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~a---G~d~yL~KP~~~~~L~~~I~~l~~~ 1167 (1177)
.+.=|+-+.+.+- ..+|||+...... .+..+. |-++++..|-+.++|.++|..++..
T Consensus 341 ~E~~g~~vlEAmA--------~G~PVI~s~~gg~----~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~~ 400 (465)
T PLN02871 341 SETLGFVVLEAMA--------SGVPVVAARAGGI----PDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLAD 400 (465)
T ss_pred ccccCcHHHHHHH--------cCCCEEEcCCCCc----HhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHhC
Confidence 2222333444433 3489986543322 233444 8999999999999999999988753
No 359
>PF08348 PAS_6: YheO-like PAS domain; InterPro: IPR013559 This domain is found in various hypothetical bacterial proteins that are similar to the Escherichia coli protein YheO (P64624 from SWISSPROT). Their function is unknown, but a few members are annotated as being HTH-containing proteins and putative DNA-binding proteins.
Probab=21.23 E-value=1.2e+02 Score=30.19 Aligned_cols=71 Identities=15% Similarity=0.192 Sum_probs=41.8
Q ss_pred CC-cccccccccCCCCCCC-cccccccccCCCCCccceeeeeccc--CccceeeeccccCCCCCCCcEEEEEEeehhhhH
Q 001044 243 DP-ITGEKIGKASPIPPDD-LINIAGISQVPDGVASWHVAVSKFT--NSPLLSAALPVWDPTTSNKSIVAVVGVTTALSS 318 (1177)
Q Consensus 243 ~~-~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~w~~~~~~~~--~~~~~~~~~pv~~~~~~~~~~~~v~gv~~~~~~ 318 (1177)
|+ .|||++|.|....... +.+-.+ ...+-..|...+ +..+-+.+..+.|. +|.++|..++..-.+.
T Consensus 39 Ng~vsgR~vGdp~t~~~l~~l~~~~~-------~~~~~~nY~~~~~~Gk~lrSsT~~Ird~---~g~~iG~LCIN~D~s~ 108 (118)
T PF08348_consen 39 NGHVSGRKVGDPITDLALELLKEKQY-------EEDYIINYKTKTKDGKILRSSTFFIRDE---NGKLIGALCINFDISA 108 (118)
T ss_pred CCCccCCccCCchhHHHHHHHhcccc-------CCCccccccccCCCCCEEEEEEEEEECC---CCCEEEEEEEEeccHH
Confidence 55 8999999887543222 111111 111111221112 45666777899996 8899999999876665
Q ss_pred HHHHH
Q 001044 319 VGQLM 323 (1177)
Q Consensus 319 i~~~l 323 (1177)
+..+-
T Consensus 109 ~~~~~ 113 (118)
T PF08348_consen 109 LEQAQ 113 (118)
T ss_pred HHHHH
Confidence 55543
No 360
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=21.21 E-value=7.7e+02 Score=29.90 Aligned_cols=73 Identities=19% Similarity=0.207 Sum_probs=50.2
Q ss_pred CccEEEEeCC----CCCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEE-----EECCCCHHHHH
Q 001044 1088 RFDLILMDCQ----MPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAY-----LTKPIDSERMV 1158 (1177)
Q Consensus 1088 ~~DLIlmDi~----MP~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~y-----L~KP~~~~~L~ 1158 (1177)
..|.|....- .....+++..+++|+. .++||++.-+- ..+...+++++|+|.+ |.+.-++.+..
T Consensus 131 GaD~I~~~pg~~~~~~~~~~~~~l~~l~~~------~~iPI~a~GGI-~~~n~~~~l~aGAdgv~vGsaI~~~~d~~~~~ 203 (430)
T PRK07028 131 GVDYINVHVGIDQQMLGKDPLELLKEVSEE------VSIPIAVAGGL-DAETAAKAVAAGADIVIVGGNIIKSADVTEAA 203 (430)
T ss_pred CCCEEEEEeccchhhcCCChHHHHHHHHhh------CCCcEEEECCC-CHHHHHHHHHcCCCEEEEChHHcCCCCHHHHH
Confidence 4677765421 1225678888888853 23898887665 5677889999999954 55666777777
Q ss_pred HHHHHHhhc
Q 001044 1159 STILRLTKN 1167 (1177)
Q Consensus 1159 ~~I~~l~~~ 1167 (1177)
..+++.+++
T Consensus 204 ~~l~~~i~~ 212 (430)
T PRK07028 204 RKIREAIDS 212 (430)
T ss_pred HHHHHHHhc
Confidence 777776654
No 361
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=21.20 E-value=3.2e+02 Score=31.39 Aligned_cols=68 Identities=18% Similarity=0.066 Sum_probs=0.0
Q ss_pred EEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEEE
Q 001044 1048 VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVAL 1127 (1177)
Q Consensus 1048 v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~mdG~e~~r~IR~~~~~~~~~~ipIIal 1127 (1177)
.+.+.+-+||.++++. .+|+|++| +|+.-+=-++.+.++ ...| +..
T Consensus 198 eVEv~tleea~ea~~~------------------------gaDiI~LD-n~s~e~l~~av~~~~--------~~~~-lea 243 (281)
T PRK06106 198 EVEVDTLDQLEEALEL------------------------GVDAVLLD-NMTPDTLREAVAIVA--------GRAI-TEA 243 (281)
T ss_pred EEEeCCHHHHHHHHHc------------------------CCCEEEeC-CCCHHHHHHHHHHhC--------CCce-EEE
Q ss_pred ecCCCHHHHHHHHHcCCCEEEE
Q 001044 1128 TAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1128 Ta~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
++.-..+...+..+.|+|-.-+
T Consensus 244 SGGI~~~ni~~yA~tGVD~Is~ 265 (281)
T PRK06106 244 SGRITPETAPAIAASGVDLISV 265 (281)
T ss_pred ECCCCHHHHHHHHhcCCCEEEe
No 362
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=20.99 E-value=2.7e+02 Score=29.95 Aligned_cols=93 Identities=13% Similarity=0.218 Sum_probs=61.3
Q ss_pred HHHHHHhhcCCEEEEE--cCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC-----CCHHHHHH
Q 001044 1036 VACKILEKVGATVSVV--PDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK-----MDGYEATI 1108 (1177)
Q Consensus 1036 ~l~~~L~~~G~~v~~a--~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~-----mdG~e~~r 1108 (1177)
.....|++.|+.+..- ..+...++.+.. -+||.|=+|..+.. .....+++
T Consensus 136 ~~~~~l~~~G~~l~ld~~g~~~~~~~~l~~-----------------------~~~d~iKld~~~~~~~~~~~~~~~~l~ 192 (240)
T cd01948 136 ATLRRLRALGVRIALDDFGTGYSSLSYLKR-----------------------LPVDYLKIDRSFVRDIETDPEDRAIVR 192 (240)
T ss_pred HHHHHHHHCCCeEEEeCCCCcHhhHHHHHh-----------------------CCCCEEEECHHHHHhHhcChhhHHHHH
Confidence 3455677889987764 456666666653 36999999965431 23355666
Q ss_pred HHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCC----EEEECCCCHH
Q 001044 1109 EIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMN----AYLTKPIDSE 1155 (1177)
Q Consensus 1109 ~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d----~yL~KP~~~~ 1155 (1177)
.|...... .++++| .++-.+.++...+.+.|++ .|+.||.+.+
T Consensus 193 ~l~~~~~~---~~~~vi-a~gVe~~~~~~~~~~~gi~~~QG~~~~~p~~~~ 239 (240)
T cd01948 193 AIIALAHS---LGLKVV-AEGVETEEQLELLRELGCDYVQGYLFSRPLPAE 239 (240)
T ss_pred HHHHHHHH---CCCeEE-EEecCCHHHHHHHHHcCCCeeeeceeccCCCCC
Confidence 66654332 235554 5788888899999999985 4566777643
No 363
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=20.94 E-value=6.8e+02 Score=30.37 Aligned_cols=73 Identities=12% Similarity=0.112 Sum_probs=45.5
Q ss_pred CceEEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHH
Q 001044 850 PVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAV 926 (1177)
Q Consensus 850 p~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~ 926 (1177)
+++++++|..++++++..+.+.+.. ......+.++ .............+.|..-++.||+....+...+....
T Consensus 42 ~~DlVllD~~~p~~~g~~ll~~l~~---~~~~~~vIvl-t~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l 114 (463)
T TIGR01818 42 QPDLLITDVRMPGEDGLDLLPQIKK---RHPQLPVIVM-TAHSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERAL 114 (463)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHH---hCCCCeEEEE-eCCCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHH
Confidence 4568889999988876544433332 1122223333 33333344455667788889999999998888776654
No 364
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=20.89 E-value=3.5e+02 Score=30.74 Aligned_cols=41 Identities=17% Similarity=0.168 Sum_probs=32.6
Q ss_pred HHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEE
Q 001044 1104 YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1148 (1177)
Q Consensus 1104 ~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL 1148 (1177)
++.+++||+..+ .++|||+..+-.+.++..+++.+|||.+.
T Consensus 230 ~~~v~~i~~~~~----~~ipiia~GGI~~~~da~~~l~~GAd~V~ 270 (289)
T cd02810 230 LRWVARLAARLQ----LDIPIIGVGGIDSGEDVLEMLMAGASAVQ 270 (289)
T ss_pred HHHHHHHHHhcC----CCCCEEEECCCCCHHHHHHHHHcCccHhe
Confidence 566777776421 25999999999999999999999998654
No 365
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=20.69 E-value=4.4e+02 Score=29.10 Aligned_cols=56 Identities=14% Similarity=0.160 Sum_probs=41.8
Q ss_pred Ccc-EEEEeCCCCC-CC--HHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1088 RFD-LILMDCQMPK-MD--GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1088 ~~D-LIlmDi~MP~-md--G~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
.+| +++.|+.--+ .. -++++++|++. ..+||++--+-.+.++..++++.|++..+.
T Consensus 40 G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~------~~~pv~~~GGI~s~~d~~~~l~~G~~~v~i 99 (243)
T cd04731 40 GADELVFLDITASSEGRETMLDVVERVAEE------VFIPLTVGGGIRSLEDARRLLRAGADKVSI 99 (243)
T ss_pred CCCEEEEEcCCcccccCcccHHHHHHHHHh------CCCCEEEeCCCCCHHHHHHHHHcCCceEEE
Confidence 455 7888887422 12 26778888764 248999998889999999999999987764
No 366
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=20.66 E-value=1.4e+03 Score=26.92 Aligned_cols=42 Identities=19% Similarity=0.139 Sum_probs=34.3
Q ss_pred HHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEEC
Q 001044 1103 GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1150 (1177)
Q Consensus 1103 G~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~K 1150 (1177)
+++++..+++. .++|||+-.+-....|..||+.+|||.++.=
T Consensus 186 ~l~ai~ev~~a------~~~pVIadGGIr~~~Di~KALa~GAd~Vmig 227 (321)
T TIGR01306 186 QLAALRWCAKA------ARKPIIADGGIRTHGDIAKSIRFGASMVMIG 227 (321)
T ss_pred HHHHHHHHHHh------cCCeEEEECCcCcHHHHHHHHHcCCCEEeec
Confidence 35567777652 3589999999999999999999999998753
No 367
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=20.59 E-value=1e+03 Score=26.67 Aligned_cols=100 Identities=12% Similarity=0.200 Sum_probs=68.8
Q ss_pred HHHHHHhhcCCEE--EEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC-----CCCCHHHHHH
Q 001044 1036 VACKILEKVGATV--SVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM-----PKMDGYEATI 1108 (1177)
Q Consensus 1036 ~l~~~L~~~G~~v--~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~M-----P~mdG~e~~r 1108 (1177)
.+...|.+.|+.+ +-+..|-..++.+.. -+||.|=.|-.+ -......+++
T Consensus 140 ~~l~~L~~~G~~ialDDFGtG~ssl~~L~~-----------------------l~~d~iKID~~fi~~i~~~~~~~~iv~ 196 (256)
T COG2200 140 ALLRQLRELGVRIALDDFGTGYSSLSYLKR-----------------------LPPDILKIDRSFVRDLETDARDQAIVR 196 (256)
T ss_pred HHHHHHHHCCCeEEEECCCCCHHHHHHHhh-----------------------CCCCeEEECHHHHhhcccCcchHHHHH
Confidence 3446677788765 458899999999864 489999888543 2333445666
Q ss_pred HHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCC----EEEECCCCHHHHHHHHH
Q 001044 1109 EIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMN----AYLTKPIDSERMVSTIL 1162 (1177)
Q Consensus 1109 ~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d----~yL~KP~~~~~L~~~I~ 1162 (1177)
.|=..... ..+.+|+ -+-...+....+.+.|+| .|+.||...+++...+.
T Consensus 197 ~iv~la~~---l~~~vva-EGVEt~~ql~~L~~~G~~~~QGylf~~P~~~~~~~~~~~ 250 (256)
T COG2200 197 AIVALAHK---LGLTVVA-EGVETEEQLDLLRELGCDYLQGYLFSRPLPADALDALLS 250 (256)
T ss_pred HHHHHHHH---CCCEEEE-eecCCHHHHHHHHHcCCCeEeeccccCCCCHHHHHHHHh
Confidence 66555443 2355554 455667777788899998 57899999877766553
No 368
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=20.42 E-value=1.1e+03 Score=25.38 Aligned_cols=73 Identities=16% Similarity=0.064 Sum_probs=44.9
Q ss_pred ceEEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001044 851 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 927 (1177)
Q Consensus 851 ~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 927 (1177)
.+++++|..++++++..+-..+.. ......+.++-.+ ..........+.|...++.||+....+...+..+..
T Consensus 51 pdlvllD~~mp~~~gle~~~~l~~---~~~~~~iivls~~-~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~~~ 123 (225)
T PRK10046 51 PGLILLDNYLPDGRGINLLHELVQ---AHYPGDVVFTTAA-SDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 (225)
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHh---cCCCCCEEEEEcC-CCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHHHH
Confidence 478899999999876443333321 1112223333222 223334445567888999999999999988877644
No 369
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=20.40 E-value=1.3e+03 Score=28.01 Aligned_cols=31 Identities=35% Similarity=0.466 Sum_probs=18.7
Q ss_pred cceeeeccccCCCCCCCcEEEEEEeehhhhHHHH
Q 001044 288 PLLSAALPVWDPTTSNKSIVAVVGVTTALSSVGQ 321 (1177)
Q Consensus 288 ~~~~~~~pv~~~~~~~~~~~~v~gv~~~~~~i~~ 321 (1177)
+.+.+..|++++ .|..+|++.+......+.+
T Consensus 143 ~~~~~~~p~~~~---~~~~iG~v~vg~~~~~i~~ 173 (542)
T PRK11086 143 QALRVFTPVYDE---NGKQIGVVAVGISLSEVTE 173 (542)
T ss_pred ceeEEEeeeEcC---CCCEEEEEEEEEEHHHHHH
Confidence 345566788875 6677888766544444433
No 370
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=20.31 E-value=5.1e+02 Score=30.19 Aligned_cols=41 Identities=17% Similarity=0.349 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHH-cCCCEEEE
Q 001044 1103 GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG-VGMNAYLT 1149 (1177)
Q Consensus 1103 G~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~-aG~d~yL~ 1149 (1177)
.++.+++|++. .++|||+.-+-.+.++..++++ .|+|..+.
T Consensus 182 ~~~~i~~ik~~------~~iPVI~nGgI~s~~da~~~l~~~gadgVmi 223 (321)
T PRK10415 182 EYDSIRAVKQK------VSIPVIANGDITDPLKARAVLDYTGADALMI 223 (321)
T ss_pred ChHHHHHHHHh------cCCcEEEeCCCCCHHHHHHHHhccCCCEEEE
Confidence 37888888864 3599999888889999999997 69998764
No 371
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=20.25 E-value=2.7e+02 Score=31.41 Aligned_cols=54 Identities=20% Similarity=0.321 Sum_probs=41.1
Q ss_pred cEEEEeCCCCCC-CH--HHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHH-HcCCCEEEE
Q 001044 1090 DLILMDCQMPKM-DG--YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL-GVGMNAYLT 1149 (1177)
Q Consensus 1090 DLIlmDi~MP~m-dG--~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l-~aG~d~yL~ 1149 (1177)
.++++|+.--++ .| +++++++++. ..+|||+--+-.+.+|..+++ +.|+|+.+.
T Consensus 168 ~ii~~~i~~~G~~~G~d~~~i~~~~~~------~~ipvIasGGv~s~eD~~~l~~~~GvdgViv 225 (258)
T PRK01033 168 EILLNSIDRDGTMKGYDLELLKSFRNA------LKIPLIALGGAGSLDDIVEAILNLGADAAAA 225 (258)
T ss_pred EEEEEccCCCCCcCCCCHHHHHHHHhh------CCCCEEEeCCCCCHHHHHHHHHHCCCCEEEE
Confidence 488888754322 23 6778888764 359999999999999999999 799997653
No 372
>PRK04302 triosephosphate isomerase; Provisional
Probab=20.15 E-value=1e+03 Score=26.03 Aligned_cols=42 Identities=17% Similarity=0.272 Sum_probs=32.7
Q ss_pred HHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEEC
Q 001044 1104 YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1150 (1177)
Q Consensus 1104 ~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~K 1150 (1177)
.++.+.||+.. .++|||+-.+-...++..++++.|+|+++.=
T Consensus 161 ~~~~~~ir~~~-----~~~pvi~GggI~~~e~~~~~~~~gadGvlVG 202 (223)
T PRK04302 161 EDAVEAVKKVN-----PDVKVLCGAGISTGEDVKAALELGADGVLLA 202 (223)
T ss_pred HHHHHHHHhcc-----CCCEEEEECCCCCHHHHHHHHcCCCCEEEEe
Confidence 35566777642 3589998888888899999999999999864
No 373
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=20.14 E-value=3.3e+02 Score=31.52 Aligned_cols=68 Identities=13% Similarity=-0.015 Sum_probs=47.8
Q ss_pred EEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEEE
Q 001044 1048 VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVAL 1127 (1177)
Q Consensus 1048 v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~mdG~e~~r~IR~~~~~~~~~~ipIIal 1127 (1177)
.+.+++-+|+.++++. .+|+|++|-+-|. +=-++.+.++. -.++-.
T Consensus 209 eVEvetleea~eA~~a------------------------GaDiImLDnmspe-~l~~av~~~~~---------~~~lEa 254 (294)
T PRK06978 209 QIEVETLAQLETALAH------------------------GAQSVLLDNFTLD-MMREAVRVTAG---------RAVLEV 254 (294)
T ss_pred EEEcCCHHHHHHHHHc------------------------CCCEEEECCCCHH-HHHHHHHhhcC---------CeEEEE
Confidence 3568899999999863 5899999964433 22333333321 246788
Q ss_pred ecCCCHHHHHHHHHcCCCEEEE
Q 001044 1128 TAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1128 Ta~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
++.-..+...+..+.|+|-.-+
T Consensus 255 SGGIt~~ni~~yA~tGVD~IS~ 276 (294)
T PRK06978 255 SGGVNFDTVRAFAETGVDRISI 276 (294)
T ss_pred ECCCCHHHHHHHHhcCCCEEEe
Confidence 8899999999988999986543
No 374
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=20.05 E-value=8.5e+02 Score=26.46 Aligned_cols=77 Identities=17% Similarity=0.196 Sum_probs=44.2
Q ss_pred CCccEEEEeCCCCC---------CCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHH---HHHcCCCEEEECCCC-
Q 001044 1087 PRFDLILMDCQMPK---------MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK---CLGVGMNAYLTKPID- 1153 (1177)
Q Consensus 1087 ~~~DLIlmDi~MP~---------mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~---~l~aG~d~yL~KP~~- 1153 (1177)
..+|.|++|++-.. .+-.++++.++.... ....++|=+-+.. .....+ +++.|+++.+.-=++
T Consensus 20 ~g~D~vilDlEd~~~~~~K~~ar~~~~~~~~~~~~~~~---~~~~~~VRvn~~~-~~~~~~Dl~~l~~g~~gI~lP~ves 95 (221)
T PF03328_consen 20 SGADFVILDLEDGVPPDEKDEAREDLAEALRSIRAARA---AGSEIIVRVNSLD-SPHIERDLEALDAGADGIVLPKVES 95 (221)
T ss_dssp TCSSEEEEESSTTSSGGGHHHHHHHHHHHHHHHHHHTT---SSSEEEEE-SSTT-CHHHHHHHHHHHTTSSEEEETT--S
T ss_pred cCCCEEEEeCcccCCcccchhhHHHHHHHHHhhccccc---ccccceecCCCCC-cchhhhhhhhcccCCCeeeccccCc
Confidence 37999999999766 444556666654221 1123444444444 334445 999999999886665
Q ss_pred HHHHHHHHHHHhhcC
Q 001044 1154 SERMVSTILRLTKNM 1168 (1177)
Q Consensus 1154 ~~~L~~~I~~l~~~~ 1168 (1177)
.+++.. +.+.++..
T Consensus 96 ~~~~~~-~~~~~~~~ 109 (221)
T PF03328_consen 96 AEDARQ-AVAALRYP 109 (221)
T ss_dssp HHHHHH-HHHHHSHT
T ss_pred HHHHHH-HHHHHhhc
Confidence 444444 44444433
Done!