Query 001044
Match_columns 1177
No_of_seqs 696 out of 5500
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 08:06:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001044.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001044hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2c2a_A Sensor histidine kinase 100.0 3.4E-38 1.2E-42 348.5 31.1 233 486-758 11-249 (258)
2 4ew8_A Sensor protein DIVL; si 100.0 5E-33 1.7E-37 308.0 33.1 227 486-759 31-258 (268)
3 3jz3_A Sensor protein QSEC; he 100.0 1.7E-34 5.8E-39 309.8 13.5 216 495-758 2-218 (222)
4 2e0a_A Pyruvate dehydrogenase 100.0 1.5E-32 5E-37 323.4 25.9 220 496-758 96-351 (394)
5 2btz_A Pyruvate dehydrogenase 100.0 1.2E-32 4.1E-37 324.2 23.5 219 497-758 97-351 (394)
6 1gkz_A [3-methyl-2-oxobutanoat 100.0 3.2E-32 1.1E-36 319.9 23.9 224 490-758 116-374 (388)
7 2q8g_A [pyruvate dehydrogenase 100.0 5.1E-32 1.7E-36 320.2 23.4 219 498-758 108-364 (407)
8 3d36_A Sporulation kinase B; G 100.0 3.2E-31 1.1E-35 288.5 23.4 215 493-759 12-227 (244)
9 1y8o_A [pyruvate dehydrogenase 100.0 1.7E-31 5.7E-36 316.9 22.4 220 496-758 119-375 (419)
10 3a0r_A Sensor protein; four he 100.0 5.3E-31 1.8E-35 302.3 21.6 215 493-758 130-346 (349)
11 4fpp_A Phosphotransferase; fou 100.0 2E-29 6.7E-34 278.0 23.4 196 497-755 48-246 (247)
12 1b3q_A Protein (chemotaxis pro 99.9 4.9E-26 1.7E-30 266.4 18.7 202 493-758 8-249 (379)
13 3to5_A CHEY homolog; alpha(5)b 99.9 1E-25 3.5E-30 225.1 17.2 122 1020-1167 11-133 (134)
14 1ysr_A Sensor-type histidine k 99.9 4.4E-23 1.5E-27 208.3 18.2 146 565-757 4-149 (150)
15 1id0_A PHOQ histidine kinase; 99.9 7.1E-23 2.4E-27 206.9 19.6 145 567-758 2-146 (152)
16 3ehh_A Sensor kinase (YOCF pro 99.9 9.8E-23 3.3E-27 218.5 21.5 190 493-757 26-216 (218)
17 3mm4_A Histidine kinase homolo 99.9 6.5E-23 2.2E-27 219.3 16.3 137 1020-1169 60-198 (206)
18 3sl2_A Sensor histidine kinase 99.9 2.3E-22 7.9E-27 209.1 16.9 152 568-759 2-154 (177)
19 3a0y_A Sensor protein; ATP-LID 99.9 5.7E-22 2E-26 199.8 19.2 147 564-758 1-149 (152)
20 1bxd_A ENVZ(290-450), protein 99.9 3.8E-22 1.3E-26 204.0 16.6 149 563-759 4-152 (161)
21 1r62_A Nitrogen regulation pro 99.9 3.7E-22 1.3E-26 202.7 15.6 156 563-757 2-159 (160)
22 3luf_A Two-component system re 99.9 2E-20 7E-25 207.4 27.7 124 1021-1169 124-247 (259)
23 2lpm_A Two-component response 99.9 4.9E-23 1.7E-27 202.4 2.1 115 1020-1167 7-122 (123)
24 1i58_A Chemotaxis protein CHEA 99.8 2.1E-21 7.2E-26 204.0 12.7 150 566-756 2-188 (189)
25 3gl9_A Response regulator; bet 99.8 4.1E-20 1.4E-24 179.8 18.0 119 1022-1166 3-121 (122)
26 3t6k_A Response regulator rece 99.8 1.1E-19 3.6E-24 180.3 18.5 125 1021-1171 4-128 (136)
27 2r25_B Osmosensing histidine p 99.8 2.2E-19 7.6E-24 177.3 17.4 126 1022-1169 3-129 (133)
28 2ayx_A Sensor kinase protein R 99.8 2.9E-18 9.8E-23 189.4 28.1 120 1020-1167 128-247 (254)
29 3n0r_A Response regulator; sig 99.8 1.9E-20 6.6E-25 210.7 10.7 120 1021-1171 160-281 (286)
30 3f6p_A Transcriptional regulat 99.8 2.4E-19 8.3E-24 173.6 16.9 117 1022-1167 3-119 (120)
31 3h1g_A Chemotaxis protein CHEY 99.8 2.7E-19 9.3E-24 175.4 17.3 124 1020-1168 4-128 (129)
32 3m6m_D Sensory/regulatory prot 99.8 2.8E-19 9.7E-24 179.0 17.3 127 1019-1169 12-138 (143)
33 3rqi_A Response regulator prot 99.8 6.7E-19 2.3E-23 184.3 12.9 119 1020-1166 6-124 (184)
34 3gt7_A Sensor protein; structu 99.8 6.8E-18 2.3E-22 170.9 18.6 124 1021-1170 7-130 (154)
35 1mb3_A Cell division response 99.8 3.9E-18 1.3E-22 164.9 16.1 121 1022-1168 2-122 (124)
36 1dbw_A Transcriptional regulat 99.8 7.4E-18 2.5E-22 164.0 18.1 120 1021-1168 3-122 (126)
37 3zxo_A Redox sensor histidine 99.8 3.3E-18 1.1E-22 168.0 15.0 126 566-757 2-128 (129)
38 3ehg_A Sensor kinase (YOCF pro 99.8 2E-18 6.9E-23 170.1 13.4 125 569-757 2-126 (128)
39 1srr_A SPO0F, sporulation resp 99.8 7.5E-18 2.6E-22 163.3 17.2 119 1022-1168 4-122 (124)
40 2pl1_A Transcriptional regulat 99.8 9.5E-18 3.2E-22 161.4 17.6 119 1022-1168 1-119 (121)
41 3crn_A Response regulator rece 99.8 8.5E-18 2.9E-22 165.3 17.3 118 1022-1167 4-121 (132)
42 1tmy_A CHEY protein, TMY; chem 99.8 1E-17 3.5E-22 161.1 16.8 116 1022-1165 3-119 (120)
43 1jbe_A Chemotaxis protein CHEY 99.8 1.3E-17 4.5E-22 162.3 17.5 121 1021-1167 4-125 (128)
44 3lua_A Response regulator rece 99.8 4.6E-18 1.6E-22 168.7 14.3 126 1021-1171 4-131 (140)
45 2a9o_A Response regulator; ess 99.8 2E-17 6.7E-22 158.8 17.7 117 1022-1167 2-118 (120)
46 1zgz_A Torcad operon transcrip 99.8 2E-17 6.8E-22 159.6 17.8 117 1022-1167 3-119 (122)
47 1dcf_A ETR1 protein; beta-alph 99.8 1.4E-17 4.9E-22 164.2 17.0 125 1020-1168 6-130 (136)
48 3r0j_A Possible two component 99.8 1.2E-17 4.1E-22 183.4 18.1 121 1020-1168 22-142 (250)
49 1xhf_A DYE resistance, aerobic 99.8 2.1E-17 7.2E-22 159.7 17.6 117 1022-1167 4-120 (123)
50 3b2n_A Uncharacterized protein 99.7 1.7E-17 5.7E-22 163.5 16.8 122 1022-1171 4-127 (133)
51 3grc_A Sensor protein, kinase; 99.7 6.6E-18 2.3E-22 167.3 13.6 124 1021-1170 6-130 (140)
52 1i3c_A Response regulator RCP1 99.7 2.7E-17 9.2E-22 165.4 18.2 127 1021-1166 8-136 (149)
53 3heb_A Response regulator rece 99.7 2.1E-17 7.3E-22 166.4 17.4 129 1021-1166 4-134 (152)
54 3eod_A Protein HNR; response r 99.7 1.5E-17 5.2E-22 162.5 15.8 121 1020-1168 6-127 (130)
55 1p6q_A CHEY2; chemotaxis, sign 99.7 9E-18 3.1E-22 163.7 13.9 121 1021-1167 6-127 (129)
56 1dz3_A Stage 0 sporulation pro 99.7 1.8E-17 6.1E-22 162.2 16.0 122 1022-1170 3-126 (130)
57 3hzh_A Chemotaxis response reg 99.7 1.9E-17 6.4E-22 168.2 16.7 122 1020-1167 35-157 (157)
58 3hdv_A Response regulator; PSI 99.7 3.4E-17 1.2E-21 161.3 17.9 124 1021-1170 7-130 (136)
59 3i42_A Response regulator rece 99.7 8.8E-18 3E-22 163.5 13.5 121 1021-1168 3-123 (127)
60 3kto_A Response regulator rece 99.7 7.7E-18 2.6E-22 166.5 12.7 122 1021-1170 6-129 (136)
61 4dad_A Putative pilus assembly 99.7 8E-18 2.7E-22 168.1 13.0 123 1020-1169 19-143 (146)
62 2qzj_A Two-component response 99.7 2.4E-17 8.4E-22 163.2 16.2 119 1021-1168 4-122 (136)
63 3c3m_A Response regulator rece 99.7 2.8E-17 9.5E-22 162.9 16.6 121 1022-1168 4-124 (138)
64 3hv2_A Response regulator/HD d 99.7 3.4E-17 1.2E-21 165.3 17.4 120 1020-1167 13-133 (153)
65 3kht_A Response regulator; PSI 99.7 3E-17 1E-21 163.6 16.7 121 1021-1167 5-128 (144)
66 3cfy_A Putative LUXO repressor 99.7 3E-17 1E-21 162.8 16.2 118 1022-1167 5-122 (137)
67 1k68_A Phytochrome response re 99.7 5.4E-17 1.8E-21 159.6 17.8 129 1021-1168 2-132 (140)
68 1mvo_A PHOP response regulator 99.7 3.8E-17 1.3E-21 160.8 16.6 121 1022-1170 4-124 (136)
69 3nhm_A Response regulator; pro 99.7 2.4E-17 8.1E-22 161.6 14.9 122 1021-1170 4-125 (133)
70 4e7p_A Response regulator; DNA 99.7 5.1E-17 1.7E-21 163.4 17.7 122 1020-1169 19-142 (150)
71 3ilh_A Two component response 99.7 4.5E-17 1.5E-21 161.8 17.0 131 1021-1170 9-142 (146)
72 3f6c_A Positive transcription 99.7 2E-17 6.8E-22 162.4 13.8 121 1022-1170 2-123 (134)
73 3hdg_A Uncharacterized protein 99.7 2.8E-17 9.7E-22 162.1 14.9 120 1021-1168 7-126 (137)
74 3cnb_A DNA-binding response re 99.7 8.5E-17 2.9E-21 159.3 18.4 125 1021-1171 8-134 (143)
75 1zh2_A KDP operon transcriptio 99.7 4E-17 1.4E-21 156.8 15.4 118 1022-1168 2-119 (121)
76 3snk_A Response regulator CHEY 99.7 5.1E-18 1.7E-22 167.4 9.2 119 1021-1167 14-133 (135)
77 3jte_A Response regulator rece 99.7 8.7E-17 3E-21 159.8 18.2 120 1022-1167 4-123 (143)
78 3dzd_A Transcriptional regulat 99.7 1.1E-17 3.9E-22 194.7 13.4 118 1023-1168 2-119 (368)
79 3h5i_A Response regulator/sens 99.7 1.8E-17 6.3E-22 164.6 12.9 119 1021-1167 5-124 (140)
80 3zxq_A Hypoxia sensor histidin 99.7 4.8E-17 1.6E-21 158.6 15.6 122 570-757 2-123 (124)
81 2jba_A Phosphate regulon trans 99.7 1.4E-17 4.7E-22 161.7 11.6 122 1022-1169 3-124 (127)
82 3eul_A Possible nitrate/nitrit 99.7 8.8E-17 3E-21 161.8 18.0 124 1019-1170 13-138 (152)
83 3lte_A Response regulator; str 99.7 8.5E-17 2.9E-21 157.4 16.8 122 1021-1169 6-127 (132)
84 2zay_A Response regulator rece 99.7 5.4E-17 1.9E-21 162.1 15.6 123 1020-1168 7-129 (147)
85 1k66_A Phytochrome response re 99.7 9.1E-17 3.1E-21 160.0 16.6 131 1020-1168 5-139 (149)
86 3q9s_A DNA-binding response re 99.7 5.3E-17 1.8E-21 178.7 16.1 121 1020-1169 36-156 (249)
87 3a10_A Response regulator; pho 99.7 6E-17 2E-21 154.8 13.3 114 1022-1165 2-115 (116)
88 1a04_A Nitrate/nitrite respons 99.7 1.5E-16 5.1E-21 170.0 17.9 119 1022-1168 6-126 (215)
89 1yio_A Response regulatory pro 99.7 5.1E-17 1.7E-21 172.6 13.9 119 1021-1167 4-122 (208)
90 3kcn_A Adenylate cyclase homol 99.7 1.6E-16 5.4E-21 159.9 16.8 119 1021-1167 4-123 (151)
91 2qxy_A Response regulator; reg 99.7 1.8E-16 6.1E-21 157.3 16.0 122 1021-1171 4-125 (142)
92 3n53_A Response regulator rece 99.7 6.3E-17 2.2E-21 160.4 12.4 119 1022-1167 4-122 (140)
93 1w25_A Stalked-cell differenti 99.7 1.5E-16 5.2E-21 190.2 17.7 119 1022-1166 2-120 (459)
94 3cg0_A Response regulator rece 99.7 3.3E-16 1.1E-20 154.6 16.8 120 1020-1168 8-129 (140)
95 2rjn_A Response regulator rece 99.7 3.8E-16 1.3E-20 157.5 17.3 119 1020-1166 6-125 (154)
96 1kgs_A DRRD, DNA binding respo 99.7 1.8E-16 6E-21 170.4 15.7 119 1022-1168 3-121 (225)
97 1s8n_A Putative antiterminator 99.7 1.4E-16 5E-21 169.0 14.8 117 1022-1167 14-131 (205)
98 3cg4_A Response regulator rece 99.7 8.2E-17 2.8E-21 159.6 12.0 122 1020-1167 6-127 (142)
99 3eq2_A Probable two-component 99.7 5.8E-17 2E-21 190.2 12.4 118 1021-1166 5-123 (394)
100 2qr3_A Two-component system re 99.7 4.1E-16 1.4E-20 153.9 16.7 122 1021-1170 3-129 (140)
101 3cu5_A Two component transcrip 99.7 1.2E-16 4.1E-21 159.3 12.4 117 1022-1166 3-122 (141)
102 3c97_A Signal transduction his 99.7 1.5E-16 5.1E-21 157.8 12.9 121 1022-1168 11-131 (140)
103 3cz5_A Two-component response 99.7 4.8E-16 1.6E-20 156.6 16.6 121 1020-1168 4-126 (153)
104 2jk1_A HUPR, hydrogenase trans 99.7 4.5E-16 1.5E-20 154.2 16.0 117 1022-1167 2-119 (139)
105 2gkg_A Response regulator homo 99.7 4.7E-16 1.6E-20 150.2 15.2 120 1022-1168 6-126 (127)
106 1qkk_A DCTD, C4-dicarboxylate 99.7 4.6E-16 1.6E-20 157.1 15.8 119 1021-1167 3-121 (155)
107 2qvg_A Two component response 99.7 6.6E-16 2.3E-20 153.2 16.1 127 1021-1167 7-135 (143)
108 1ys7_A Transcriptional regulat 99.7 2.2E-16 7.4E-21 170.6 13.3 120 1021-1168 7-126 (233)
109 1ny5_A Transcriptional regulat 99.7 3.9E-16 1.3E-20 183.0 16.2 117 1022-1166 1-117 (387)
110 2pln_A HP1043, response regula 99.7 1.3E-15 4.4E-20 150.4 17.0 118 1019-1168 16-134 (137)
111 3eqz_A Response regulator; str 99.7 2.2E-16 7.6E-21 154.6 11.4 121 1021-1170 3-128 (135)
112 2gwr_A DNA-binding response re 99.7 5.1E-16 1.7E-20 169.0 15.0 118 1022-1168 6-123 (238)
113 3kyj_B CHEY6 protein, putative 99.7 2.5E-16 8.6E-21 157.2 11.3 110 1020-1157 12-125 (145)
114 2oqr_A Sensory transduction pr 99.7 5.1E-16 1.7E-20 167.5 14.4 118 1022-1168 5-122 (230)
115 3bre_A Probable two-component 99.6 5.2E-16 1.8E-20 179.1 14.6 118 1022-1165 19-137 (358)
116 2rdm_A Response regulator rece 99.6 1.8E-15 6.1E-20 147.7 15.6 123 1020-1171 4-127 (132)
117 2j48_A Two-component sensor ki 99.6 1E-15 3.5E-20 145.4 13.3 117 1022-1167 2-118 (119)
118 2qv0_A Protein MRKE; structura 99.6 2.1E-15 7E-20 149.8 15.5 117 1021-1167 9-127 (143)
119 3t8y_A CHEB, chemotaxis respon 99.6 2.7E-15 9.1E-20 153.7 16.7 121 1021-1170 25-158 (164)
120 2qsj_A DNA-binding response re 99.6 1.2E-15 4.1E-20 153.7 12.7 122 1021-1169 3-126 (154)
121 1p2f_A Response regulator; DRR 99.6 1.5E-15 5E-20 162.9 13.9 116 1022-1168 3-118 (220)
122 3klo_A Transcriptional regulat 99.6 2.8E-16 9.5E-21 169.6 7.9 121 1021-1169 7-131 (225)
123 3sy8_A ROCR; TIM barrel phosph 99.6 9.7E-16 3.3E-20 180.4 12.4 121 1022-1169 4-130 (400)
124 3c3w_A Two component transcrip 99.6 3.2E-16 1.1E-20 169.4 7.5 119 1022-1168 2-122 (225)
125 2zbk_B Type 2 DNA topoisomeras 99.6 8.9E-16 3E-20 185.0 11.9 117 605-758 24-148 (530)
126 2b4a_A BH3024; flavodoxin-like 99.6 1.2E-15 3.9E-20 150.9 10.1 119 1019-1168 13-132 (138)
127 1mu5_A Type II DNA topoisomera 99.6 1.3E-15 4.4E-20 181.6 12.4 117 605-758 26-149 (471)
128 1qo0_D AMIR; binding protein, 99.6 1.4E-15 4.8E-20 160.2 9.8 115 1019-1166 10-124 (196)
129 1dc7_A NTRC, nitrogen regulati 99.6 9.9E-17 3.4E-21 154.5 0.1 119 1022-1168 4-122 (124)
130 1th8_A Anti-sigma F factor; SP 99.6 3.8E-15 1.3E-19 149.6 11.4 103 607-759 35-141 (145)
131 2hqr_A Putative transcriptiona 99.6 9.7E-15 3.3E-19 156.8 15.3 115 1022-1168 1-116 (223)
132 3luf_A Two-component system re 99.6 7E-15 2.4E-19 162.8 10.7 102 1022-1154 5-107 (259)
133 1w25_A Stalked-cell differenti 99.6 7.2E-13 2.5E-17 158.3 28.7 267 774-1166 3-269 (459)
134 1a2o_A CHEB methylesterase; ba 99.5 5.8E-14 2E-18 162.2 16.3 117 1022-1167 4-133 (349)
135 2vyc_A Biodegradative arginine 99.5 1.5E-14 5.2E-19 183.0 9.9 120 1022-1168 1-134 (755)
136 2q2e_B Type 2 DNA topoisomeras 99.3 1.4E-12 4.8E-17 159.2 10.0 114 605-757 31-154 (621)
137 3cwo_X Beta/alpha-barrel prote 98.9 7.1E-10 2.4E-14 119.3 6.4 94 1045-1166 5-100 (237)
138 1kij_A DNA gyrase subunit B; t 98.4 2.7E-07 9.4E-12 107.5 6.4 86 606-735 31-128 (390)
139 1b63_A MUTL; DNA mismatch repa 98.2 2.6E-06 8.9E-11 97.5 10.2 88 611-745 24-117 (333)
140 4dah_A Sporulation kinase D; a 98.2 4.7E-06 1.6E-10 88.6 10.9 72 273-349 108-180 (217)
141 1h7s_A PMS1 protein homolog 2; 98.1 6.1E-06 2.1E-10 95.4 10.1 87 611-744 34-126 (365)
142 3zcc_A HAMP, osmolarity sensor 98.0 2.2E-05 7.6E-10 73.6 10.9 59 491-555 56-114 (114)
143 3na3_A DNA mismatch repair pro 98.0 1.3E-05 4.5E-10 91.6 10.7 88 611-745 28-121 (348)
144 3lif_A Putative diguanylate cy 98.0 6.2E-06 2.1E-10 89.7 7.4 75 272-349 109-184 (254)
145 3ke6_A Protein RV1364C/MT1410; 98.0 4.5E-06 1.5E-10 98.0 6.2 90 608-758 294-387 (399)
146 3lib_A Hypothetical sensory tr 97.8 2.1E-05 7.1E-10 87.3 7.6 73 272-349 133-205 (290)
147 3li9_A Hypothetical sensory tr 97.8 1.1E-05 3.8E-10 89.6 5.1 73 272-349 134-206 (291)
148 3lic_A Sensor protein; PDC fol 97.7 6.5E-05 2.2E-09 82.2 9.3 71 271-349 126-198 (274)
149 3cwo_X Beta/alpha-barrel prote 97.7 0.00046 1.6E-08 73.6 14.9 71 1088-1162 144-221 (237)
150 3h4l_A DNA mismatch repair pro 97.6 8.4E-05 2.9E-09 85.7 8.5 88 611-745 25-118 (367)
151 3c8c_A Methyl-accepting chemot 97.5 0.00021 7E-09 75.9 8.3 74 273-348 102-176 (240)
152 1ixm_A SPO0B, protein (sporula 97.4 0.00086 3E-08 70.4 11.4 140 497-707 23-170 (192)
153 3e4o_A C4-dicarboxylate transp 97.3 0.0006 2.1E-08 76.9 10.3 61 282-350 163-223 (305)
154 3zrx_A AF1503 protein, osmolar 97.3 0.001 3.4E-08 62.0 9.6 57 494-556 59-115 (115)
155 3lid_A Putative sensory BOX/gg 97.2 0.0012 4.3E-08 73.9 12.0 137 162-350 69-207 (295)
156 2wer_A ATP-dependent molecular 97.1 0.00023 7.8E-09 76.5 4.0 57 684-744 74-140 (220)
157 2ayx_A Sensor kinase protein R 97.0 0.00087 3E-08 73.2 7.8 98 1018-1166 8-105 (254)
158 1s16_A Topoisomerase IV subuni 96.7 0.0024 8.1E-08 74.3 7.8 49 684-732 64-124 (390)
159 1qy5_A Endoplasmin; GRP94, NEC 96.6 0.00044 1.5E-08 76.3 1.1 57 684-744 76-147 (269)
160 1yc1_A HSP 86, heat shock prot 96.5 0.0035 1.2E-07 69.0 7.5 57 684-744 116-182 (264)
161 2ior_A Chaperone protein HTPG; 96.5 0.001 3.4E-08 72.2 2.6 57 684-744 95-163 (235)
162 3by9_A Sensor protein; histidi 96.1 0.0043 1.5E-07 66.9 5.6 67 274-349 115-181 (260)
163 3n75_A LDC, lysine decarboxyla 95.7 0.0078 2.7E-07 75.3 5.7 98 1035-1162 20-118 (715)
164 2gqp_A Endoplasmin; GRP94, HSP 95.0 0.0067 2.3E-07 65.8 1.8 58 684-745 80-152 (236)
165 3to5_A CHEY homolog; alpha(5)b 95.0 0.21 7.2E-06 49.0 12.5 119 772-926 12-131 (134)
166 1ei1_A DNA gyrase B, GYRB; ATP 94.8 0.042 1.4E-06 63.8 7.7 50 684-733 67-128 (391)
167 2yxb_A Coenzyme B12-dependent 94.4 0.71 2.4E-05 46.7 14.8 118 1021-1166 18-144 (161)
168 3q7r_A Transcriptional regulat 94.1 0.59 2E-05 42.8 11.7 106 1022-1168 13-119 (121)
169 3r0j_A Possible two component 93.9 0.53 1.8E-05 50.5 13.7 141 747-928 1-141 (250)
170 1y4s_A Chaperone protein HTPG; 93.7 0.13 4.4E-06 62.3 8.9 48 684-731 75-134 (559)
171 3fv5_A DNA topoisomerase 4 sub 93.2 0.16 5.4E-06 53.5 7.6 48 685-732 51-110 (201)
172 3peh_A Endoplasmin homolog; st 92.9 0.1 3.5E-06 57.5 5.8 57 684-744 94-161 (281)
173 2cg9_A ATP-dependent molecular 92.7 0.15 5.3E-06 62.7 7.7 22 684-705 74-95 (677)
174 3hzh_A Chemotaxis response reg 92.5 0.99 3.4E-05 44.3 12.2 119 772-926 36-155 (157)
175 2ioq_A Chaperone protein HTPG; 91.9 0.17 5.7E-06 62.1 6.6 48 684-731 75-134 (624)
176 3o0i_A HSP90AA1 protein; HSP90 91.8 0.057 2E-06 58.8 2.2 56 684-744 108-174 (256)
177 3m6m_D Sensory/regulatory prot 91.8 1.8 6.1E-05 41.7 12.8 121 772-926 14-134 (143)
178 2o1u_A Endoplasmin; GRP94, HSP 91.3 0.12 4.2E-06 63.5 4.5 22 684-705 93-114 (666)
179 3cwv_A DNA gyrase, B subunit, 91.2 0.32 1.1E-05 56.0 7.6 19 608-626 27-45 (369)
180 1wv2_A Thiazole moeity, thiazo 90.7 1.4 4.9E-05 47.6 11.5 96 1037-1163 127-234 (265)
181 3t0h_A Heat shock protein HSP 90.3 0.27 9.1E-06 52.8 5.5 59 684-746 80-148 (228)
182 3nmq_A Heat shock protein HSP 89.7 0.22 7.5E-06 53.7 4.2 55 684-743 87-152 (239)
183 4emv_A DNA topoisomerase IV, B 88.8 0.7 2.4E-05 49.4 7.3 65 685-754 74-149 (226)
184 3ilh_A Two component response 88.4 6.1 0.00021 37.3 13.4 126 773-927 10-138 (146)
185 4duh_A DNA gyrase subunit B; s 88.2 0.8 2.7E-05 48.8 7.3 65 685-754 69-145 (220)
186 3hdv_A Response regulator; PSI 87.9 6.9 0.00023 36.7 13.2 120 773-928 8-127 (136)
187 3gl9_A Response regulator; bet 87.6 4.9 0.00017 37.3 11.8 117 774-926 4-120 (122)
188 3t6k_A Response regulator rece 87.4 7.5 0.00026 36.7 13.3 120 773-928 5-124 (136)
189 3f6p_A Transcriptional regulat 86.8 6.4 0.00022 36.3 12.1 114 774-926 4-117 (120)
190 1ccw_A Protein (glutamate muta 86.7 7.1 0.00024 38.1 12.7 110 1028-1165 14-134 (137)
191 1dcf_A ETR1 protein; beta-alph 86.5 7.7 0.00026 36.4 12.7 122 771-927 6-128 (136)
192 3mm4_A Histidine kinase homolo 86.2 5.5 0.00019 41.1 12.4 175 730-927 15-195 (206)
193 3eod_A Protein HNR; response r 86.0 6 0.00021 36.8 11.5 120 771-928 6-126 (130)
194 3hv2_A Response regulator/HD d 85.7 8.3 0.00028 37.1 12.8 119 772-928 14-133 (153)
195 3f6c_A Positive transcription 85.5 9.9 0.00034 35.4 12.9 117 774-928 3-120 (134)
196 3grc_A Sensor protein, kinase; 85.1 5.3 0.00018 37.7 10.8 120 773-928 7-127 (140)
197 1zxm_A TOPO IIA ATPase, DNA to 84.5 1.4 4.8E-05 51.2 7.3 48 684-731 87-146 (400)
198 3gt7_A Sensor protein; structu 84.1 8.5 0.00029 37.2 12.0 120 773-928 8-127 (154)
199 3lte_A Response regulator; str 83.9 13 0.00045 34.4 12.9 118 773-928 7-125 (132)
200 3h5i_A Response regulator/sens 83.4 12 0.00042 35.3 12.6 118 773-928 6-124 (140)
201 3hdg_A Uncharacterized protein 83.2 8.6 0.0003 36.0 11.4 117 774-928 9-125 (137)
202 1srr_A SPO0F, sporulation resp 83.1 14 0.00048 33.8 12.6 115 774-926 5-119 (124)
203 1dbw_A Transcriptional regulat 82.7 17 0.00057 33.5 13.0 117 773-927 4-120 (126)
204 3i42_A Response regulator rece 82.5 11 0.00039 34.6 11.8 117 773-926 4-120 (127)
205 2htm_A Thiazole biosynthesis p 82.4 6.2 0.00021 42.8 10.7 97 1037-1163 116-225 (268)
206 1mb3_A Cell division response 82.4 15 0.00052 33.4 12.5 118 774-927 3-120 (124)
207 3cg4_A Response regulator rece 82.1 17 0.00057 34.1 13.0 120 772-927 7-126 (142)
208 3h1g_A Chemotaxis protein CHEY 82.1 13 0.00045 34.5 12.1 119 774-927 7-126 (129)
209 3q58_A N-acetylmannosamine-6-p 82.0 6.6 0.00023 41.9 10.9 84 1035-1149 119-209 (229)
210 3jte_A Response regulator rece 81.8 17 0.00057 34.3 12.9 120 774-929 5-124 (143)
211 1pvg_A DNA topoisomerase II; G 81.7 2.2 7.5E-05 49.8 7.5 50 684-733 99-160 (418)
212 1tmy_A CHEY protein, TMY; chem 81.3 20 0.00067 32.5 12.8 114 774-925 4-118 (120)
213 3cg0_A Response regulator rece 81.2 19 0.00064 33.6 12.9 118 772-928 9-128 (140)
214 3ied_A Heat shock protein; HSP 80.9 0.68 2.3E-05 50.2 2.6 56 684-743 131-197 (272)
215 3eul_A Possible nitrate/nitrit 80.6 22 0.00076 33.9 13.4 119 772-928 15-135 (152)
216 3lua_A Response regulator rece 80.5 6.7 0.00023 37.1 9.4 120 773-928 5-127 (140)
217 3ttz_A DNA gyrase subunit B; p 80.5 2.4 8.2E-05 44.4 6.5 14 684-697 64-77 (198)
218 2gkg_A Response regulator homo 80.2 20 0.00069 32.5 12.5 116 774-926 7-123 (127)
219 3cnb_A DNA-binding response re 80.1 22 0.00076 33.2 13.1 120 773-928 9-130 (143)
220 1zgz_A Torcad operon transcrip 80.1 24 0.00083 32.0 13.0 115 774-927 4-118 (122)
221 3crn_A Response regulator rece 80.0 20 0.0007 33.3 12.7 116 774-927 5-120 (132)
222 3b2n_A Uncharacterized protein 80.0 21 0.00072 33.2 12.8 116 774-927 5-122 (133)
223 2zay_A Response regulator rece 79.9 17 0.00059 34.3 12.3 120 773-928 9-128 (147)
224 3lnu_A Topoisomerase IV subuni 79.6 2.5 8.6E-05 49.0 6.9 49 685-733 84-144 (408)
225 4e7p_A Response regulator; DNA 79.6 17 0.00057 34.8 12.2 118 773-928 21-140 (150)
226 2r25_B Osmosensing histidine p 79.5 15 0.00051 34.4 11.6 122 774-927 4-126 (133)
227 2lpm_A Two-component response 79.2 2.1 7.1E-05 41.2 5.2 109 773-924 9-118 (123)
228 2rjn_A Response regulator rece 79.2 16 0.00055 35.0 11.9 119 772-928 7-126 (154)
229 3heb_A Response regulator rece 79.0 24 0.00084 33.6 13.2 128 773-927 5-134 (152)
230 3nhm_A Response regulator; pro 79.0 18 0.0006 33.5 11.8 117 774-928 6-122 (133)
231 1k68_A Phytochrome response re 79.0 20 0.00068 33.2 12.2 126 773-927 3-130 (140)
232 1xhf_A DYE resistance, aerobic 78.8 27 0.00092 31.7 12.9 115 774-927 5-119 (123)
233 2qr3_A Two-component system re 78.6 21 0.00073 33.2 12.4 118 773-928 4-126 (140)
234 3kto_A Response regulator rece 78.6 16 0.00053 34.3 11.4 118 773-928 7-126 (136)
235 3snk_A Response regulator CHEY 78.6 13 0.00045 34.7 10.8 116 773-926 15-131 (135)
236 1mvo_A PHOP response regulator 78.2 32 0.0011 31.8 13.4 116 774-927 5-120 (136)
237 3kcn_A Adenylate cyclase homol 78.1 20 0.00067 34.3 12.2 118 773-928 5-123 (151)
238 3kht_A Response regulator; PSI 78.1 17 0.00057 34.4 11.5 120 773-928 6-128 (144)
239 3cfy_A Putative LUXO repressor 77.9 22 0.00075 33.4 12.2 116 774-927 6-121 (137)
240 3c3m_A Response regulator rece 77.7 28 0.00095 32.6 12.9 119 774-928 5-123 (138)
241 2pl1_A Transcriptional regulat 77.6 28 0.00096 31.4 12.6 115 775-927 3-117 (121)
242 3a10_A Response regulator; pho 77.6 24 0.00081 31.7 12.0 112 774-925 3-114 (116)
243 3rqi_A Response regulator prot 77.4 11 0.00037 37.9 10.3 117 772-926 7-123 (184)
244 4dad_A Putative pilus assembly 77.3 13 0.00043 35.4 10.4 121 771-928 19-141 (146)
245 3n0r_A Response regulator; sig 77.3 9.9 0.00034 41.7 10.8 115 773-928 161-277 (286)
246 2j48_A Two-component sensor ki 77.2 14 0.00047 33.0 10.2 113 774-925 3-115 (119)
247 3igs_A N-acetylmannosamine-6-p 77.2 11 0.00039 40.1 10.8 84 1035-1149 119-209 (232)
248 2qzj_A Two-component response 77.1 23 0.0008 33.2 12.2 115 774-927 6-120 (136)
249 3dzd_A Transcriptional regulat 76.8 14 0.00049 42.0 12.3 117 774-928 2-118 (368)
250 2a9o_A Response regulator; ess 76.2 31 0.0011 31.0 12.4 113 775-926 4-116 (120)
251 1jbe_A Chemotaxis protein CHEY 75.2 35 0.0012 31.1 12.6 118 774-927 6-124 (128)
252 1k66_A Phytochrome response re 74.2 32 0.0011 32.2 12.3 129 773-927 7-137 (149)
253 2jk1_A HUPR, hydrogenase trans 74.1 41 0.0014 31.4 13.0 75 850-927 44-118 (139)
254 2qxy_A Response regulator; reg 73.6 26 0.0009 32.8 11.5 117 773-928 5-121 (142)
255 1p6q_A CHEY2; chemotaxis, sign 73.4 28 0.00095 31.9 11.4 118 774-927 8-126 (129)
256 3cz5_A Two-component response 73.3 32 0.0011 32.8 12.2 118 773-928 6-125 (153)
257 1yio_A Response regulatory pro 73.2 27 0.00093 35.3 12.3 118 773-928 5-122 (208)
258 3c97_A Signal transduction his 72.7 24 0.00083 33.1 11.0 117 774-928 12-130 (140)
259 1zh2_A KDP operon transcriptio 71.8 41 0.0014 30.2 12.1 114 775-927 4-117 (121)
260 1dz3_A Stage 0 sporulation pro 71.8 45 0.0015 30.6 12.5 117 774-927 4-122 (130)
261 1ys7_A Transcriptional regulat 71.7 30 0.001 35.7 12.4 117 774-928 9-125 (233)
262 2gwr_A DNA-binding response re 71.6 32 0.0011 35.9 12.6 116 774-928 7-122 (238)
263 1qkk_A DCTD, C4-dicarboxylate 71.5 23 0.0008 33.8 10.8 118 773-928 4-121 (155)
264 3q9s_A DNA-binding response re 69.9 26 0.00089 37.1 11.6 117 773-928 38-154 (249)
265 1kgs_A DRRD, DNA binding respo 69.4 32 0.0011 35.2 12.0 117 774-928 4-120 (225)
266 3n53_A Response regulator rece 68.6 31 0.0011 32.2 10.7 118 774-928 5-122 (140)
267 1s8n_A Putative antiterminator 67.2 37 0.0013 34.3 11.7 116 773-927 14-130 (205)
268 2b4a_A BH3024; flavodoxin-like 66.3 32 0.0011 32.0 10.3 116 771-927 14-130 (138)
269 1a04_A Nitrate/nitrite respons 65.6 56 0.0019 33.2 12.8 117 774-928 7-125 (215)
270 2qvg_A Two component response 65.0 60 0.0021 30.1 12.0 122 774-925 9-132 (143)
271 3f4w_A Putative hexulose 6 pho 63.8 84 0.0029 32.2 13.8 113 1023-1167 79-209 (211)
272 3qja_A IGPS, indole-3-glycerol 63.7 70 0.0024 34.8 13.5 84 1037-1149 154-241 (272)
273 3ffs_A Inosine-5-monophosphate 63.6 57 0.002 37.6 13.3 102 1021-1149 156-274 (400)
274 2qsj_A DNA-binding response re 63.1 38 0.0013 32.1 10.3 118 774-928 5-124 (154)
275 1ny5_A Transcriptional regulat 62.4 49 0.0017 37.8 12.7 115 775-927 3-117 (387)
276 1req_A Methylmalonyl-COA mutas 62.3 63 0.0021 40.1 14.0 118 1021-1166 596-722 (727)
277 2i2x_B MTAC, methyltransferase 62.0 76 0.0026 34.1 13.4 113 1021-1167 123-244 (258)
278 1y80_A Predicted cobalamin bin 61.9 48 0.0016 34.4 11.4 111 1021-1163 88-207 (210)
279 3o63_A Probable thiamine-phosp 61.0 47 0.0016 35.6 11.3 89 1049-1166 140-240 (243)
280 2rdm_A Response regulator rece 60.6 99 0.0034 28.1 13.7 117 773-928 6-123 (132)
281 1i3c_A Response regulator RCP1 60.6 74 0.0025 30.1 11.8 126 773-927 9-136 (149)
282 2qv0_A Protein MRKE; structura 60.3 1.1E+02 0.0037 28.4 13.0 116 773-928 10-127 (143)
283 3t8y_A CHEB, chemotaxis respon 60.0 95 0.0032 30.0 12.8 105 773-915 26-133 (164)
284 3kyj_B CHEY6 protein, putative 59.4 47 0.0016 31.2 10.1 110 772-918 13-125 (145)
285 2jba_A Phosphate regulon trans 59.1 59 0.002 29.4 10.5 118 774-927 4-121 (127)
286 3cu5_A Two component transcrip 59.1 61 0.0021 30.4 10.9 74 850-927 49-122 (141)
287 3kp1_A D-ornithine aminomutase 58.8 50 0.0017 40.1 11.6 117 1021-1167 602-735 (763)
288 4fo4_A Inosine 5'-monophosphat 58.6 1.1E+02 0.0038 34.8 14.5 101 1021-1149 120-239 (366)
289 3by8_A Sensor protein DCUS; hi 58.5 14 0.00048 35.9 6.1 38 285-325 102-139 (142)
290 2oqr_A Sensory transduction pr 56.5 42 0.0014 34.5 9.9 116 774-928 6-121 (230)
291 3ezx_A MMCP 1, monomethylamine 56.4 39 0.0013 35.5 9.6 100 1021-1149 92-202 (215)
292 1xi3_A Thiamine phosphate pyro 56.3 54 0.0018 33.7 10.6 71 1088-1165 128-210 (215)
293 1xrs_B D-lysine 5,6-aminomutas 55.9 1E+02 0.0034 33.5 12.8 116 1021-1165 120-256 (262)
294 3eq2_A Probable two-component 55.7 43 0.0015 38.0 10.6 116 773-926 6-122 (394)
295 1qo0_D AMIR; binding protein, 55.5 52 0.0018 32.9 10.2 113 772-927 12-124 (196)
296 2xij_A Methylmalonyl-COA mutas 54.1 87 0.003 39.1 13.3 117 1021-1165 604-729 (762)
297 3eqz_A Response regulator; str 53.7 74 0.0025 29.0 10.3 117 773-928 4-125 (135)
298 1p2f_A Response regulator; DRR 53.0 86 0.0029 31.8 11.6 114 774-928 4-117 (220)
299 1geq_A Tryptophan synthase alp 52.3 28 0.00095 37.0 7.8 62 1089-1156 32-121 (248)
300 2pln_A HP1043, response regula 51.9 1.4E+02 0.0049 27.3 13.0 114 771-927 17-132 (137)
301 3tsm_A IGPS, indole-3-glycerol 48.9 98 0.0033 33.7 11.4 92 1038-1158 162-262 (272)
302 1geq_A Tryptophan synthase alp 48.9 1E+02 0.0035 32.5 11.6 96 1023-1150 110-220 (248)
303 1yad_A Regulatory protein TENI 48.6 57 0.002 33.9 9.4 71 1088-1165 130-212 (221)
304 3klo_A Transcriptional regulat 48.5 58 0.002 33.5 9.4 119 773-928 8-129 (225)
305 1xm3_A Thiazole biosynthesis p 48.1 28 0.00096 37.7 7.0 42 1103-1150 166-207 (264)
306 3rht_A (gatase1)-like protein; 47.9 10 0.00036 41.2 3.4 78 1022-1129 5-87 (259)
307 3sy8_A ROCR; TIM barrel phosph 46.5 1E+02 0.0035 35.1 11.9 99 1039-1164 283-392 (400)
308 1ka9_F Imidazole glycerol phos 46.2 65 0.0022 34.0 9.5 67 1089-1161 166-242 (252)
309 2ekc_A AQ_1548, tryptophan syn 44.5 61 0.0021 35.0 9.0 73 1088-1165 44-144 (262)
310 3khj_A Inosine-5-monophosphate 44.4 1.1E+02 0.0036 34.9 11.3 90 1033-1149 133-235 (361)
311 3usb_A Inosine-5'-monophosphat 44.3 2.2E+02 0.0075 33.8 14.5 102 1021-1149 268-387 (511)
312 4adt_A Pyridoxine biosynthetic 43.9 1.4E+02 0.0049 32.8 11.9 58 1104-1167 196-260 (297)
313 4gfh_A DNA topoisomerase 2; to 42.9 42 0.0014 44.1 8.5 49 685-733 95-155 (1177)
314 4avf_A Inosine-5'-monophosphat 42.8 1.8E+02 0.0061 34.4 13.4 101 1021-1149 241-360 (490)
315 1x1o_A Nicotinate-nucleotide p 42.8 95 0.0033 34.1 10.2 93 1023-1149 168-267 (286)
316 3c3w_A Two component transcrip 42.3 45 0.0015 34.4 7.3 117 774-928 3-121 (225)
317 2w6r_A Imidazole glycerol phos 41.7 91 0.0031 33.2 9.9 51 1104-1160 189-245 (266)
318 3l4e_A Uncharacterized peptida 41.5 95 0.0032 32.2 9.5 81 1020-1129 26-121 (206)
319 2gjl_A Hypothetical protein PA 41.4 1.7E+02 0.0058 32.3 12.4 81 1039-1149 112-200 (328)
320 1p0z_A Sensor kinase CITA; tra 38.6 12 0.00042 35.7 2.0 31 286-319 98-128 (131)
321 3r2g_A Inosine 5'-monophosphat 37.7 3.3E+02 0.011 30.8 13.9 97 1021-1149 112-227 (361)
322 3nav_A Tryptophan synthase alp 36.6 36 0.0012 37.1 5.6 55 1102-1161 83-143 (271)
323 2kx7_A Sensor-like histidine k 36.3 34 0.0012 32.2 4.4 95 1018-1167 4-99 (117)
324 1y0e_A Putative N-acetylmannos 36.2 1.3E+02 0.0046 30.9 9.8 41 1103-1149 163-203 (223)
325 2v82_A 2-dehydro-3-deoxy-6-pho 36.2 51 0.0017 34.0 6.5 79 1039-1149 95-175 (212)
326 1h5y_A HISF; histidine biosynt 35.9 1.2E+02 0.0041 31.6 9.6 69 1088-1162 167-245 (253)
327 3bo9_A Putative nitroalkan dio 35.3 1.7E+02 0.006 32.4 11.1 81 1039-1149 118-204 (326)
328 2kr6_A Presenilin-1; protease, 35.2 24 0.00082 35.5 3.4 27 59-85 96-132 (176)
329 1eep_A Inosine 5'-monophosphat 34.7 2.3E+02 0.0078 32.4 12.3 44 1103-1149 241-284 (404)
330 4fxs_A Inosine-5'-monophosphat 34.7 3.7E+02 0.012 31.7 14.3 101 1021-1149 243-362 (496)
331 1vzw_A Phosphoribosyl isomeras 34.6 63 0.0022 34.1 7.0 68 1088-1161 159-239 (244)
332 1thf_D HISF protein; thermophI 34.2 72 0.0024 33.7 7.4 69 1088-1162 164-242 (253)
333 1x1o_A Nicotinate-nucleotide p 33.7 56 0.0019 35.9 6.5 65 1104-1174 183-247 (286)
334 2tps_A Protein (thiamin phosph 33.6 1.3E+02 0.0045 31.0 9.3 56 1088-1149 136-199 (227)
335 1jcn_A Inosine monophosphate d 33.1 2.1E+02 0.0073 33.8 12.1 87 1033-1149 283-386 (514)
336 2yw3_A 4-hydroxy-2-oxoglutarat 33.0 1.9E+02 0.0066 29.8 10.3 96 1044-1173 103-206 (207)
337 3bre_A Probable two-component 32.3 1.7E+02 0.0058 32.1 10.5 73 851-925 64-136 (358)
338 1dc7_A NTRC, nitrogen regulati 31.8 44 0.0015 30.0 4.6 73 851-927 48-120 (124)
339 3l0g_A Nicotinate-nucleotide p 31.8 64 0.0022 35.7 6.5 63 1105-1174 196-258 (300)
340 2c6q_A GMP reductase 2; TIM ba 31.8 4.4E+02 0.015 29.5 13.7 103 1022-1152 133-255 (351)
341 4dzz_A Plasmid partitioning pr 31.7 1.2E+02 0.004 30.4 8.4 54 1020-1097 29-84 (206)
342 3tqv_A Nicotinate-nucleotide p 31.3 54 0.0018 36.1 5.8 64 1105-1175 187-250 (287)
343 1gox_A (S)-2-hydroxy-acid oxid 31.1 2.1E+02 0.0072 32.4 11.0 58 1088-1149 246-308 (370)
344 3s83_A Ggdef family protein; s 30.6 1E+02 0.0035 32.7 7.9 101 1036-1163 143-254 (259)
345 2z6i_A Trans-2-enoyl-ACP reduc 28.9 2.8E+02 0.0096 30.7 11.5 56 1088-1149 130-190 (332)
346 1qop_A Tryptophan synthase alp 28.5 49 0.0017 35.8 4.9 57 1103-1164 81-143 (268)
347 3kts_A Glycerol uptake operon 28.4 92 0.0031 32.2 6.6 52 1088-1149 127-178 (192)
348 2xxa_A Signal recognition part 28.0 1.2E+02 0.0039 35.4 8.3 33 1021-1053 129-164 (433)
349 2hqr_A Putative transcriptiona 27.6 3.6E+02 0.012 27.1 11.3 112 775-928 3-115 (223)
350 1ka9_F Imidazole glycerol phos 27.6 1.2E+02 0.0041 31.9 7.8 53 1091-1149 48-103 (252)
351 3qz6_A HPCH/HPAI aldolase; str 27.5 5.9E+02 0.02 27.1 13.4 73 1088-1164 37-110 (261)
352 1yxy_A Putative N-acetylmannos 27.3 1.9E+02 0.0063 30.1 9.1 40 1103-1149 175-214 (234)
353 1o4u_A Type II quinolic acid p 27.1 78 0.0027 34.8 6.2 57 1104-1166 180-236 (285)
354 2oo3_A Protein involved in cat 26.9 43 0.0015 36.8 4.0 71 1021-1112 113-184 (283)
355 3ajx_A 3-hexulose-6-phosphate 26.8 51 0.0017 33.8 4.5 67 1094-1165 29-99 (207)
356 2fli_A Ribulose-phosphate 3-ep 26.7 1.4E+02 0.0048 30.6 8.0 75 1088-1164 131-217 (220)
357 3bw2_A 2-nitropropane dioxygen 26.6 3.8E+02 0.013 30.1 12.2 78 1042-1149 142-236 (369)
358 2p10_A MLL9387 protein; putati 26.3 1.6E+02 0.0053 32.3 8.2 84 1040-1150 158-259 (286)
359 4a29_A Engineered retro-aldol 26.2 6E+02 0.021 27.3 12.7 86 1036-1150 144-233 (258)
360 3vnd_A TSA, tryptophan synthas 25.9 50 0.0017 35.9 4.3 57 1102-1163 81-143 (267)
361 3o07_A Pyridoxine biosynthesis 25.7 57 0.0019 35.7 4.6 58 1104-1167 187-251 (291)
362 2w6r_A Imidazole glycerol phos 25.6 97 0.0033 33.0 6.6 55 1089-1149 44-102 (266)
363 2lci_A Protein OR36; structura 25.5 1.6E+02 0.0054 26.4 6.6 41 1024-1064 80-120 (134)
364 1j8m_F SRP54, signal recogniti 25.3 1.2E+02 0.0041 33.2 7.4 32 1020-1051 125-159 (297)
365 1tqx_A D-ribulose-5-phosphate 25.1 1.7E+02 0.0059 30.8 8.3 101 1040-1165 109-221 (227)
366 1rd5_A Tryptophan synthase alp 25.1 1.5E+02 0.0051 31.6 8.0 86 1053-1164 30-139 (262)
367 3sgz_A Hydroxyacid oxidase 2; 24.9 3.8E+02 0.013 30.2 11.5 58 1088-1149 238-300 (352)
368 3paj_A Nicotinate-nucleotide p 24.8 79 0.0027 35.3 5.7 63 1105-1174 220-282 (320)
369 2p9j_A Hypothetical protein AQ 24.8 1.9E+02 0.0066 27.6 8.2 69 1088-1163 8-94 (162)
370 3ovp_A Ribulose-phosphate 3-ep 24.8 94 0.0032 32.8 6.1 70 1088-1163 134-215 (228)
371 1p0k_A Isopentenyl-diphosphate 24.7 5.6E+02 0.019 28.3 13.1 45 1100-1149 235-279 (349)
372 2f95_B Sensory rhodopsin II tr 24.3 48 0.0016 32.0 3.5 23 453-475 68-90 (163)
373 4e5v_A Putative THUA-like prot 23.2 94 0.0032 33.9 6.0 83 1021-1129 4-94 (281)
374 3inp_A D-ribulose-phosphate 3- 22.5 1.6E+02 0.0056 31.4 7.5 105 1039-1166 128-244 (246)
375 2y88_A Phosphoribosyl isomeras 22.1 1.2E+02 0.0042 31.7 6.5 66 1088-1159 162-240 (244)
376 3vk5_A MOEO5; TIM barrel, tran 22.0 1.7E+02 0.0056 32.1 7.4 60 1088-1152 199-258 (286)
377 2px0_A Flagellar biosynthesis 22.0 1.7E+02 0.0057 32.1 7.7 94 1020-1138 133-231 (296)
378 1a2o_A CHEB methylesterase; ba 21.8 3.9E+02 0.013 29.8 10.9 59 1101-1169 285-345 (349)
379 4fxs_A Inosine-5'-monophosphat 21.0 1.8E+02 0.0062 34.4 8.3 56 1088-1149 243-299 (496)
380 3gnn_A Nicotinate-nucleotide p 20.8 77 0.0026 35.0 4.5 63 1105-1174 198-260 (298)
381 1tqj_A Ribulose-phosphate 3-ep 20.7 1.3E+02 0.0043 31.7 6.2 70 1088-1164 30-108 (230)
382 2nzl_A Hydroxyacid oxidase 1; 20.5 2.8E+02 0.0096 31.7 9.5 47 1102-1152 292-339 (392)
383 2r6o_A Putative diguanylate cy 20.3 1.7E+02 0.0058 31.9 7.3 102 1037-1165 168-280 (294)
384 2agk_A 1-(5-phosphoribosyl)-5- 20.1 94 0.0032 33.5 5.1 72 1089-1162 172-257 (260)
385 2nli_A Lactate oxidase; flavoe 20.1 4.5E+02 0.015 29.6 11.0 58 1088-1149 250-312 (368)
No 1
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=100.00 E-value=3.4e-38 Score=348.48 Aligned_cols=233 Identities=28% Similarity=0.398 Sum_probs=194.3
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhcCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcc
Q 001044 486 RKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDD--QLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKME 563 (1177)
Q Consensus 486 ~~ae~~~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~--~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~ 563 (1177)
++.++.++.|.+|++++||||||||++|.|++++|.... ...++..+++..|.+++.+|..++++++++++++.+...
T Consensus 11 ~~l~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~ 90 (258)
T 2c2a_A 11 ERLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQ 90 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTGGGCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcc
Confidence 345556677889999999999999999999999986431 123345678889999999999999999999999999999
Q ss_pred ccceeccHHHHHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccCCC----eEEEEeecc
Q 001044 564 LENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG----HIIIRGWCE 639 (1177)
Q Consensus 564 l~~~~~dL~~li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~G----~v~v~~~~~ 639 (1177)
+..+++++.+++++++..+...+..+++.+.++.....+..+.+|+.+|.|||.|||+||+||++.| .|.+.+...
T Consensus 91 ~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~~~~~~~i~i~~~~~ 170 (258)
T 2c2a_A 91 INREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEK 170 (258)
T ss_dssp CCCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESSCSCCEEEECHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEE
T ss_pred CccceecHHHHHHHHHHHHHHHHHHcCcEEEeecCCCCCceEEeCHHHHHHHHHHHHHHHHhcCcCCCCceeEEEEEecC
Confidence 9999999999999999999999999999998876544455788999999999999999999999754 355443211
Q ss_pred ccCCCCCCCcCCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCc
Q 001044 640 NLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGG 719 (1177)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~G 719 (1177)
...+.|+|.|+|+|||++.+++||+|||+.+.+.+...+|
T Consensus 171 ----------------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G 210 (258)
T 2c2a_A 171 ----------------------------------------DGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPG 210 (258)
T ss_dssp ----------------------------------------TTEEEEEEEECSSCCCGGGTTGGGSTTCCCC---------
T ss_pred ----------------------------------------CCeEEEEEEecCCCCCHHHHHhhccccccCCCCCCCCCCC
Confidence 1247799999999999999999999999988765656679
Q ss_pred cchhHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCC
Q 001044 720 TGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA 758 (1177)
Q Consensus 720 tGLGLaIvk~IVe~~GG~I~v~S~~g~GT~f~~~Lpl~~ 758 (1177)
+||||+|||++|+.|||+|+++|.+|+||+|+|+||...
T Consensus 211 ~GLGL~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP~~~ 249 (258)
T 2c2a_A 211 TGLGLAITKEIVELHGGRIWVESEVGKGSRFFVWIPKDR 249 (258)
T ss_dssp CCCTHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEECCC
T ss_pred cchHHHHHHHHHHHcCCEEEEEecCCCCcEEEEEeeCCC
Confidence 999999999999999999999999999999999999754
No 2
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=100.00 E-value=5e-33 Score=308.04 Aligned_cols=227 Identities=24% Similarity=0.427 Sum_probs=201.4
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccc
Q 001044 486 RKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELE 565 (1177)
Q Consensus 486 ~~ae~~~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~l~ 565 (1177)
++.++..+.+.+|++.++|||||||++|.++++++......+++.++.+..|..++.+|..++++++++++++.+...+.
T Consensus 31 ~~l~~~~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~ 110 (268)
T 4ew8_A 31 AALAEAERLKRDFVGNVSYELRTPLTTIIGYSELLERADGISERGRNHVAAVRAAATQLARSIDDVLDMAQIDAGEMALE 110 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccee
Confidence 34455566778999999999999999999999999876666788888999999999999999999999999999999999
Q ss_pred ceeccHHHHHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccCC-CeEEEEeeccccCCC
Q 001044 566 NTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSS-GHIIIRGWCENLDTS 644 (1177)
Q Consensus 566 ~~~~dL~~li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~-G~v~v~~~~~~~~~~ 644 (1177)
..++++.+++++++..+...+..+++.+.++++++.+ .+.+|+..|.|||.|||+||+||++. |.|.|.+...
T Consensus 111 ~~~~~l~~~l~~~~~~~~~~~~~~~i~i~~~~~~~~~-~v~~d~~~l~~il~nLl~NA~~~~~~~~~I~i~~~~~----- 184 (268)
T 4ew8_A 111 IEDIRVSDLLLNAQERALKDAQLGGVTLAVECEEDVG-LIRGDGKRLAQTLDHLVENALRQTPPGGRVTLSARRA----- 184 (268)
T ss_dssp CEEEEHHHHHHHHHHHHHHHHHHTTCEEEEECCTTSC-EEEECHHHHHHHHHHHHHHHHHHSCTTCEEEEEEEEC-----
T ss_pred eeeccHHHHHHHHHHHHHhhhhccCceEEEEcCCCCc-eEecCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEec-----
Confidence 9999999999999999999999999999999877654 58999999999999999999999986 6677654321
Q ss_pred CCCCcCCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhH
Q 001044 645 KNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGL 724 (1177)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGL 724 (1177)
...+.|+|.|+|+||+++.++++|++|++. +.+|+||||
T Consensus 185 -----------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~------~~~g~GlGL 223 (268)
T 4ew8_A 185 -----------------------------------LGEVRLDVSDTGRGVPFHVQAHIFDRFVGR------DRGGPGLGL 223 (268)
T ss_dssp -----------------------------------SSEEEEEEEESSCCCCHHHHTTTTSTTCCC------SSCCCTTHH
T ss_pred -----------------------------------CCEEEEEEEcCCCCCCHHHHHHHHHHHhcC------CCCCCcccH
Confidence 124789999999999999999999999843 246999999
Q ss_pred HHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCCC
Q 001044 725 SIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGAS 759 (1177)
Q Consensus 725 aIvk~IVe~~GG~I~v~S~~g~GT~f~~~Lpl~~~ 759 (1177)
+||+++++.|||+|+++|.+++||+|+|.||+..+
T Consensus 224 ~i~~~~~~~~gG~i~i~s~~~~Gt~~~i~lP~~~~ 258 (268)
T 4ew8_A 224 ALVKALVELHGGWVALESEPGNGSTFTCHLPETQQ 258 (268)
T ss_dssp HHHHHHHHHTTCEEEEEECTTSCEEEEEEEECCC-
T ss_pred HHHHHHHHHcCCEEEEEecCCCCEEEEEEecCCCC
Confidence 99999999999999999999999999999998653
No 3
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=100.00 E-value=1.7e-34 Score=309.85 Aligned_cols=216 Identities=21% Similarity=0.314 Sum_probs=134.4
Q ss_pred HHHHHHHhHHhhhhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHHHH
Q 001044 495 KSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKE 574 (1177)
Q Consensus 495 Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~l~~~~~dL~~l 574 (1177)
+.+|++++||||||||++|.++++++......+++..+++..|.+++.++..++++++++++++.+......+++++.++
T Consensus 2 ~~~~~~~~~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~l~~~ 81 (222)
T 3jz3_A 2 ERRFTSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKALLQLHSGIDRATRLVDQLLTLSRLDSLDNLQDVAEIPLEDL 81 (222)
T ss_dssp --------------------------------------CEECCC-CHHHHHHHHHHHHHHHTCCCSTTSTTCEEEEHHHH
T ss_pred HHHHHHHHhHHhcCcHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCcccCCHHHH
Confidence 45799999999999999999999998655444444456677788999999999999999999999998899999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccCCCe-EEEEeeccccCCCCCCCcCCcc
Q 001044 575 LEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGH-IIIRGWCENLDTSKNTAEFPTD 653 (1177)
Q Consensus 575 i~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~G~-v~v~~~~~~~~~~~~~~~~~~~ 653 (1177)
+++++..+...+..+++.+.+++++.. ..+.+|+.+|.|||.|||+||+||++.|. |.+.+.
T Consensus 82 ~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~d~~~l~~il~nLl~NAi~~~~~~~~i~i~~~---------------- 144 (222)
T 3jz3_A 82 LQSSVMDIYHTAQQAKIDVRLTLNAHS-IKRTGQPLLLSLLVRNLLDNAVRYSPQGSVVDVTLN---------------- 144 (222)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEESSCS-CEEEECHHHHHHHHHHHHHHHHHTCCTTCEEEEEEC----------------
T ss_pred HHHHHHHHHHHHHHhCCeEEEeeCCcc-eEEecCHHHHHHHHHHHHHHHHHcCCCCCeEEEEEc----------------
Confidence 999999999999999999999887663 46889999999999999999999997664 554321
Q ss_pred cccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHHHHHHHHHH
Q 001044 654 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNK 733 (1177)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~IVe~ 733 (1177)
. . .|+|.|+|+||+++.++++|++|++.+. .+.+|+||||+|||++++.
T Consensus 145 -----------------------~-~----~i~V~D~G~Gi~~~~~~~if~~f~~~~~---~~~~g~GlGL~i~~~i~~~ 193 (222)
T 3jz3_A 145 -----------------------A-D----NFIVRDNGPGVTPEALARIGERFYRPPG---QTATGSGLGLSIVQRIAKL 193 (222)
T ss_dssp -----------------------S-S----EEEEECSCC-----------------------------CTHHHHHHHHHH
T ss_pred -----------------------c-C----eEEEEECCCCCCHHHHHHHHhhhccCCC---CCCCcccccHHHHHHHHHH
Confidence 0 1 1789999999999999999999998542 2346999999999999999
Q ss_pred cCCEEEEEEeCCCceEEEEEEecCC
Q 001044 734 MGGEIKVVKKNSPGTLMQLYLLLGA 758 (1177)
Q Consensus 734 ~GG~I~v~S~~g~GT~f~~~Lpl~~ 758 (1177)
|||+|+++|.+++||+|+|++|...
T Consensus 194 ~gG~i~i~s~~~~Gt~v~~~~P~~~ 218 (222)
T 3jz3_A 194 HGMNVEFGNAEQGGFEAKVSWLEHH 218 (222)
T ss_dssp TTCEEECCBCTTSSBEEEEECCCC-
T ss_pred cCCEEEEEcCCCCcEEEEEeecCCC
Confidence 9999999999999999999999754
No 4
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=100.00 E-value=1.5e-32 Score=323.42 Aligned_cols=220 Identities=15% Similarity=0.180 Sum_probs=184.2
Q ss_pred HHHHHHhHHhhhh-----HHHHHHHHHHHhhcC---CCCCHHHHHHHH--HHHHHHHHHHHHHHHHHH-HHhhccCCccc
Q 001044 496 SQFLANMSHELRT-----PMAAIIGLLEILKSD---DQLTNEQYSTVC--QIKKSSYALLRLLNRILD-LSKVESGKMEL 564 (1177)
Q Consensus 496 s~Fla~~SHELRT-----PL~~I~G~~elL~~~---~~l~~e~~~~l~--~I~~ss~~L~~LIndLLd-lSkiEsg~l~l 564 (1177)
.+|+++++||||| ||+.|.|+++++... ....++..++++ .|.+.+.+| +|+++|+ +++. .+...+
T Consensus 96 ~~~~~~~~HeLrtpl~~vPlt~i~g~~el~~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~lL~l~~~~-~~~~~~ 172 (394)
T 2e0a_A 96 LSDFVDTLIKVRNRHHNVVPTMAQGIIEYKDACTVDPVTNQNLQYFLDRFYMNRISTRM--LMNQHILIFSDS-QTGNPS 172 (394)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHTTSCCCTTTCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCSS-CCCCTT
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhcc-cCCCCC
Confidence 3578899999999 899999999977532 123345566777 588999999 9999999 7777 777777
Q ss_pred cc----eeccHHHHHHHHHHHHHHHHhcC-----CcEEEEEc--CCCCCceEEeCHHHHHHHHHHHHhhHhhccCCCe--
Q 001044 565 EN----TEFDLQKELEELVDMFSVQCSNH-----NVETVLDL--SDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGH-- 631 (1177)
Q Consensus 565 ~~----~~~dL~~li~~vv~~~~~~a~~k-----~I~l~~~i--~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~G~-- 631 (1177)
.. +++++.++++++++.+...+..+ ++.+.+++ .+..+..+.+|+.+|.|||.|||+||+||+++|+
T Consensus 173 ~~g~i~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~~~~~~~~ 252 (394)
T 2e0a_A 173 HIGSIDPNCDVVAVVQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQPIHIVYVPSHLHHMLFELFKNAMRATVEHQEN 252 (394)
T ss_dssp SBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeccCCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77 89999999999999999999988 99988753 1223457899999999999999999999997654
Q ss_pred ------EEEEeeccccCCCCCCCcCCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcc
Q 001044 632 ------IIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFES 705 (1177)
Q Consensus 632 ------v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~ 705 (1177)
|.|.+.. +...+.|+|.|+|+|||++.+++||++
T Consensus 253 ~~~~~~I~I~~~~----------------------------------------~~~~v~i~V~D~G~GI~~~~~~~if~~ 292 (394)
T 2e0a_A 253 QPSLTPIEVIVVL----------------------------------------GKEDLTIKISDRGGGVPLRIIDRLFSY 292 (394)
T ss_dssp SSSCCCEEEEEEE----------------------------------------CSSEEEEEEEECSCCCCGGGHHHHTST
T ss_pred cCCCCCEEEEEEe----------------------------------------CCCEEEEEEEeCCCCcCHHHHHHHhCc
Confidence 7765421 122478999999999999999999999
Q ss_pred cccCCCC------CCCCCCccchhHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCC
Q 001044 706 FEQGDPS------TTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA 758 (1177)
Q Consensus 706 F~q~d~s------~~~~~~GtGLGLaIvk~IVe~~GG~I~v~S~~g~GT~f~~~Lpl~~ 758 (1177)
||+.+.. ..+..+|+||||+|||++|+.|||+|+++|.+|.||+|+|+||...
T Consensus 293 f~~~~~~~~~~~~~~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~~ 351 (394)
T 2e0a_A 293 TYSTAPTPVMDNSRNAPLAGFGYGLPISRLYAKYFQGDLNLYSLSGYGTDAIIYLKALS 351 (394)
T ss_dssp TCCSSCCC------CCCSSCSSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESSG
T ss_pred CccCCCCCCcCcCCCCCCCCcccCHHHHHHHHHHhCCEEEEEecCCccEEEEEEeCCCC
Confidence 9998765 4555689999999999999999999999999999999999999853
No 5
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=100.00 E-value=1.2e-32 Score=324.17 Aligned_cols=219 Identities=17% Similarity=0.216 Sum_probs=172.5
Q ss_pred HHHHHhHHhhhh-----HHHHHHHHHHHhhcCCCCCHH----HHHHHH--HHHHHHHHHHHHHHHHHHHHhhcc-CCccc
Q 001044 497 QFLANMSHELRT-----PMAAIIGLLEILKSDDQLTNE----QYSTVC--QIKKSSYALLRLLNRILDLSKVES-GKMEL 564 (1177)
Q Consensus 497 ~Fla~~SHELRT-----PL~~I~G~~elL~~~~~l~~e----~~~~l~--~I~~ss~~L~~LIndLLdlSkiEs-g~l~l 564 (1177)
+|+++++||||| ||+.|.|+++++.... .++. ..++++ .|.+.+.+| ||+++|++++.+. +...+
T Consensus 97 ~~~~~~~HeLrtpl~~vPlt~i~g~~ell~~~~-~~~~~~~~~~~~l~~~~i~~~~~rl--li~~ll~l~~~~~~~~~~~ 173 (394)
T 2btz_A 97 SQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYG-DDPVSNQNIQYFLDRFYLSRISIRM--LINQHTLIFDGSTNPAHPK 173 (394)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCC--------C
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhc-CCcccHHHHHHHHHHHHHhhhHHHH--HHHHHHHHhcccccCCCCc
Confidence 589999999999 9999999999986432 2222 223565 378889999 9999999999988 67777
Q ss_pred cc----eeccHHHHHHHHHHHHHHHHhc-----CCcEEEEEc--CCCCCceEEeCHHHHHHHHHHHHhhHhhccCCCe--
Q 001044 565 EN----TEFDLQKELEELVDMFSVQCSN-----HNVETVLDL--SDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGH-- 631 (1177)
Q Consensus 565 ~~----~~~dL~~li~~vv~~~~~~a~~-----k~I~l~~~i--~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~G~-- 631 (1177)
.. +++++.++++++++.+...+.. +++.+.+.. .+..+..+.+|+.+|.|||.|||+||+||+++|+
T Consensus 174 ~~g~i~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~~~~~~~~ 253 (394)
T 2btz_A 174 HIGSIDPNCNVSEVVKDAYDMAKLLCDKYYMASPDLEIQEINAANSKQPIHMVYVPSHLYHMLFELFKNAMRATVESHES 253 (394)
T ss_dssp CBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred ccceecCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEEEeccCCCCCCeEEEecHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 77 8999999999999999999987 999988743 1223457899999999999999999999998764
Q ss_pred ------EEEEeeccccCCCCCCCcCCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcc
Q 001044 632 ------IIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFES 705 (1177)
Q Consensus 632 ------v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~ 705 (1177)
|.|.+.. +...+.|+|.|+|+|||++.+++||++
T Consensus 254 ~~~~~~I~I~~~~----------------------------------------~~~~v~i~V~D~G~GI~~~~~~~iF~~ 293 (394)
T 2btz_A 254 SLILPPIKVMVAL----------------------------------------GEEDLSIKMSDRGGGVPLRKIERLFSY 293 (394)
T ss_dssp CSCCCCEEEEEEE----------------------------------------CSSEEEEEEEECSCCCCHHHHHHHTCT
T ss_pred CCCCCCEEEEEEe----------------------------------------CCCEEEEEEEeCCCCCCHHHHHHHhcc
Confidence 7765421 122478999999999999999999999
Q ss_pred cccCCCC-----CCCCCCccchhHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCC
Q 001044 706 FEQGDPS-----TTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA 758 (1177)
Q Consensus 706 F~q~d~s-----~~~~~~GtGLGLaIvk~IVe~~GG~I~v~S~~g~GT~f~~~Lpl~~ 758 (1177)
||+.+.. ..+..+|+||||+|||.+++.|||+|+++|.+|.||+|+|+||...
T Consensus 294 f~~~~~~~~~~~~~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~~ 351 (394)
T 2btz_A 294 MYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYLKALS 351 (394)
T ss_dssp TTTCCC--------------CCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESST
T ss_pred cccCCCCCCcccCCCCCCCccCCHHHHHHHHHHhCCEEEEEecCCCceEEEEEecCCC
Confidence 9998765 4455679999999999999999999999999999999999999854
No 6
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=100.00 E-value=3.2e-32 Score=319.91 Aligned_cols=224 Identities=18% Similarity=0.198 Sum_probs=188.9
Q ss_pred HHHHHHHHHHHHhHHhhhhHHHHHH-HHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccee
Q 001044 490 ASNNYKSQFLANMSHELRTPMAAII-GLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTE 568 (1177)
Q Consensus 490 ~~~~~Ks~Fla~~SHELRTPL~~I~-G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~l~~~~ 568 (1177)
+.++.+.+|+++++||+||||++|. |+.+++. ....+++..+++..|..++.+|..|++++|++++++.+.+.+..++
T Consensus 116 ~~~~~~~~~l~~i~helrtpL~~i~~g~~~l~~-~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~l~~~~~~~~~~~~~~ 194 (388)
T 1gkz_A 116 ADEAQYCQLVRQLLDDHKDVVTLLAEGLRESRK-HIEDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPDFVGIICTR 194 (388)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHSSS-SCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCTTEETTEEEE
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-hccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccceecCC
Confidence 4456778999999999999999999 7777654 3334567788999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHhcC-----CcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccCCC---------eEEE
Q 001044 569 FDLQKELEELVDMFSVQCSNH-----NVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG---------HIII 634 (1177)
Q Consensus 569 ~dL~~li~~vv~~~~~~a~~k-----~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~G---------~v~v 634 (1177)
+++.++++++++.+...+..+ ++.+.. +. +..+.+|+.+|.|||.|||+||+||+.+| .|.|
T Consensus 195 ~~l~~li~~~~~~~~~~~~~~~g~~~~i~i~~--~~--~~~~~~~~~~L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I 270 (388)
T 1gkz_A 195 LSPKKIIEKWVDFARRLCEHKYGNAPRVRING--HV--AARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVI 270 (388)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHSCCCCEEEEE--ST--TCCEEECCHHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEc--cC--CCceeecHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCEEE
Confidence 999999999999999999988 555443 33 23578999999999999999999999765 5666
Q ss_pred EeeccccCCCCCCCcCCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCC-
Q 001044 635 RGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST- 713 (1177)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~- 713 (1177)
.+.. +...+.|+|.|+|+|||++.+++||++||+.+...
T Consensus 271 ~~~~----------------------------------------~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~ 310 (388)
T 1gkz_A 271 TIAN----------------------------------------NDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEAST 310 (388)
T ss_dssp EEEE----------------------------------------CSSEEEEEEECCSCCCCTTTTTTTTSTTCCCC----
T ss_pred EEEe----------------------------------------CCCEEEEEEEEeCCCcCHHHHHHhcCcccccCCCcc
Confidence 5421 12247899999999999999999999999987632
Q ss_pred -------------------CCCCCccchhHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCC
Q 001044 714 -------------------TRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA 758 (1177)
Q Consensus 714 -------------------~~~~~GtGLGLaIvk~IVe~~GG~I~v~S~~g~GT~f~~~Lpl~~ 758 (1177)
++..+|+||||+|||.+++.|||+|+++|.+|.||+|+|+||...
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~G~GLGL~i~r~i~~~~gG~i~v~s~~g~Gt~f~i~LP~~~ 374 (388)
T 1gkz_A 311 QDPRISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQGIGTDVYLRLRHID 374 (388)
T ss_dssp ---------------------CCSCSSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEECSS
T ss_pred cccccccchhhcccccccCCCCcCCccCCHHHHHHHHHHhCCEEEEEecCCCcEEEEEEecCCC
Confidence 223479999999999999999999999999999999999999854
No 7
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=99.98 E-value=5.1e-32 Score=320.19 Aligned_cols=219 Identities=18% Similarity=0.200 Sum_probs=177.9
Q ss_pred HHHHhHHhhhh-----HHHHHHHHHHHhhcCCC---CCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhcc----C---
Q 001044 498 FLANMSHELRT-----PMAAIIGLLEILKSDDQ---LTNEQYSTVCQ--IKKSSYALLRLLNRILDLSKVES----G--- 560 (1177)
Q Consensus 498 Fla~~SHELRT-----PL~~I~G~~elL~~~~~---l~~e~~~~l~~--I~~ss~~L~~LIndLLdlSkiEs----g--- 560 (1177)
++++++||||| ||+.|.|+++++..... ..++..++++. +.+.+.+| ||+++|++++.|. +
T Consensus 108 ~f~~~~HeLrt~~~~vPLt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~~~~~~~rl--li~~ll~l~~~e~~~~~~~~~ 185 (407)
T 2q8g_A 108 DFTDTVIRIRNRHNDVIPTMAQGVIEYKESFGVDPVTSQNVQYFLDRFYMSRISIRM--LLNQHSLLFGGKGKGSPSHRK 185 (407)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHC----------C
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHhhccCccCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhccccccCCCCcc
Confidence 45555599999 99999999997764321 11233456666 77788888 9999999999976 3
Q ss_pred CccccceeccHHHHHHHHHHHHHHHHhcC-----CcEEEEEc--CCCCCceEEeCHHHHHHHHHHHHhhHhhccCCCe--
Q 001044 561 KMELENTEFDLQKELEELVDMFSVQCSNH-----NVETVLDL--SDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGH-- 631 (1177)
Q Consensus 561 ~l~l~~~~~dL~~li~~vv~~~~~~a~~k-----~I~l~~~i--~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~G~-- 631 (1177)
.+.+..+++++.++++++++.+...+..+ ++.+.+++ .+..+..+.+|+.+|.|||.|||+||+||+++|+
T Consensus 186 ~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~~~ 265 (407)
T 2q8g_A 186 HIGSINPNCNVLEVIKDGYENARRLCDLYYINSPELELEELNAKSPGQPIQVVYVPSHLYHMVFELFKNAMRATMEHHAN 265 (407)
T ss_dssp CBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeecCCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 66788899999999999999999999988 99988866 1223457899999999999999999999997653
Q ss_pred ------EEEEeeccccCCCCCCCcCCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcc
Q 001044 632 ------IIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFES 705 (1177)
Q Consensus 632 ------v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~ 705 (1177)
|.|.+.. +...+.|+|.|+|+|||++.+++||++
T Consensus 266 ~~~~~~I~I~~~~----------------------------------------~~~~v~i~V~D~G~GI~~e~~~~if~~ 305 (407)
T 2q8g_A 266 RGVYPPIQVHVTL----------------------------------------GNEDLTVKMSDRGGGVPLRKIDRLFNY 305 (407)
T ss_dssp TCCCCCEEEEEEE----------------------------------------CSSEEEEEEEECSCCCCHHHHGGGGCT
T ss_pred CCCCCCEEEEEEe----------------------------------------CCCEEEEEEEecCCCCCHHHHHHHhCc
Confidence 7765421 122478999999999999999999999
Q ss_pred cccCCCC------CCCCCCccchhHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCC
Q 001044 706 FEQGDPS------TTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA 758 (1177)
Q Consensus 706 F~q~d~s------~~~~~~GtGLGLaIvk~IVe~~GG~I~v~S~~g~GT~f~~~Lpl~~ 758 (1177)
||+.+.. ..+..+|+||||+|||.+++.|||+|+++|.+|.||+|+|+||...
T Consensus 306 f~~~~~~~~~~~~~~~~~~G~GLGL~Ivr~i~~~~gG~i~v~s~~g~Gt~f~i~LP~~~ 364 (407)
T 2q8g_A 306 MYSTAPRPRVETSRAVPLAGFGYGLPISRLYAQYFQGDLKLYSLEGYGTDAVIYIKALS 364 (407)
T ss_dssp TTTCCCCCCSSCCSCCCSSCTTCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESSG
T ss_pred cccCCCCCCccccCCCCCCCcCCCHHHHHHHHHHhCCEEEEEEcCCCceEEEEEECCCC
Confidence 9998765 2445579999999999999999999999999999999999999853
No 8
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=99.97 E-value=3.2e-31 Score=288.48 Aligned_cols=215 Identities=20% Similarity=0.349 Sum_probs=182.5
Q ss_pred HHHHHHHHHhHHhhhhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHH
Q 001044 493 NYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQ 572 (1177)
Q Consensus 493 ~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~l~~~~~dL~ 572 (1177)
+.+.+|++.++|||||||++|.+++++|......+++..+++..+.+++.++..++++++++++.+.+ ..+++++.
T Consensus 12 ~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~----~~~~~~l~ 87 (244)
T 3d36_A 12 EAVTHLAASISHEIRNPLTAARGFIQLIEEQPLAADKRRQYARIAIEELDRAEAIITDYLTFAKPAPE----TPEKLNVK 87 (244)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCC----CCEEEEHH
T ss_pred HHHHHHHHHhhHHhccHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC----CcchhhHH
Confidence 34578999999999999999999999997665445566778889999999999999999999998765 46789999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccCC-CeEEEEeeccccCCCCCCCcCC
Q 001044 573 KELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSS-GHIIIRGWCENLDTSKNTAEFP 651 (1177)
Q Consensus 573 ~li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~-G~v~v~~~~~~~~~~~~~~~~~ 651 (1177)
.++++++..+...+..+++.+.++.++ ..+.+|+..|.|||.|||+||+||++. |.|.|.+...
T Consensus 88 ~~l~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~d~~~l~~il~nLl~NA~~~~~~~~~i~i~~~~~------------ 152 (244)
T 3d36_A 88 LEIERVIDILRPLANMSCVDIQATLAP---FSVIGEREKFRQCLLNVMKNAIEAMPNGGTLQVYVSID------------ 152 (244)
T ss_dssp HHHHHHHHHHHHHHTTTTEEEEEECCC---CEEEECHHHHHHHHHHHHHHHHHTCTTCEEEEEEEEEE------------
T ss_pred HHHHHHHHHHHHHHHhcCeEEeccCCC---ceEEeCHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEe------------
Confidence 999999999999999999999887654 368899999999999999999999964 5566554221
Q ss_pred cccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHHHHHHHH
Q 001044 652 TDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 731 (1177)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~IV 731 (1177)
...+.|+|.|+|+||+++.++++|++|++.+ ..+|+||||+||++++
T Consensus 153 ----------------------------~~~~~i~i~D~G~gi~~~~~~~if~~~~~~~-----~~~g~GlGL~i~~~i~ 199 (244)
T 3d36_A 153 ----------------------------NGRVLIRIADTGVGMTKEQLERLGEPYFTTK-----GVKGTGLGMMVVYRII 199 (244)
T ss_dssp ----------------------------TTEEEEEEEECSSCCCHHHHHHTTSTTCCSS-----GGGCCSCHHHHHHHHH
T ss_pred ----------------------------CCEEEEEEEecCCCCCHHHHHHHhcccccCC-----CCCCcchhHHHHHHHH
Confidence 1247899999999999999999999999643 2468999999999999
Q ss_pred HHcCCEEEEEEeCCCceEEEEEEecCCC
Q 001044 732 NKMGGEIKVVKKNSPGTLMQLYLLLGAS 759 (1177)
Q Consensus 732 e~~GG~I~v~S~~g~GT~f~~~Lpl~~~ 759 (1177)
+.|||+|++++.+++||+|+|.||+...
T Consensus 200 ~~~gG~i~~~~~~~~G~~~~i~lP~~~~ 227 (244)
T 3d36_A 200 ESMNGTIRIESEIHKGTTVSIYLPLASS 227 (244)
T ss_dssp HHTTCEEEEEEETTTEEEEEEEEECCC-
T ss_pred HHcCCEEEEEecCCCcEEEEEEecCCCC
Confidence 9999999999999999999999998653
No 9
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=99.97 E-value=1.7e-31 Score=316.90 Aligned_cols=220 Identities=18% Similarity=0.229 Sum_probs=168.0
Q ss_pred HHHHHHhHHhhhhHHH-----HHHHHHHHhhcCCC---CCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhh-ccCCccc
Q 001044 496 SQFLANMSHELRTPMA-----AIIGLLEILKSDDQ---LTNEQYSTVCQIKKS--SYALLRLLNRILDLSKV-ESGKMEL 564 (1177)
Q Consensus 496 s~Fla~~SHELRTPL~-----~I~G~~elL~~~~~---l~~e~~~~l~~I~~s--s~~L~~LIndLLdlSki-Esg~l~l 564 (1177)
.+|. +++|||||||+ .|.|+++++..... ..++..++++.|..+ +.+| ||+++|.+.+. +.+....
T Consensus 119 ~~f~-~~~HeLrtPL~~vi~~~i~g~~ell~~~~~~~~~~~~~~~~l~~i~~~~~~~rl--li~~lL~l~~~~~~~~~~~ 195 (419)
T 1y8o_A 119 DNFL-QVLIKVRNRHNDVVPTMAQGVIEYKEKFGFDPFISTNIQYFLDRFYTNRISFRM--LINQHTLLFGGDTNPVHPK 195 (419)
T ss_dssp HHHH-HHHHHHHHHGGGHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHSCCSSCSSTT
T ss_pred HHHH-HHHHHHhcchhhhHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcccccCCCCC
Confidence 3565 56699999999 88999997754211 123344566665544 7888 99999776654 3344333
Q ss_pred c----ceeccHHHHHHHHHHHHHHHHhc-----CCcEEEEEcC--CCCCceEEeCHHHHHHHHHHHHhhHhhccCCC---
Q 001044 565 E----NTEFDLQKELEELVDMFSVQCSN-----HNVETVLDLS--DNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG--- 630 (1177)
Q Consensus 565 ~----~~~~dL~~li~~vv~~~~~~a~~-----k~I~l~~~i~--~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~G--- 630 (1177)
. .+++|+.++++++++.+...+.. +++.+.+... +..+..+.+|+.+|.|||.|||+||+||+++|
T Consensus 196 ~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~v~~d~~~L~~vl~NLl~NAik~~~~~~~~ 275 (419)
T 1y8o_A 196 HIGSIDPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPDKPIQVVYVPSHLFHMLFELFKNSMRATVELYED 275 (419)
T ss_dssp SBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccCcCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeeecCCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3 38999999999999999999887 8888876431 12345789999999999999999999999765
Q ss_pred ------eEEEEeeccccCCCCCCCcCCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhc
Q 001044 631 ------HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFE 704 (1177)
Q Consensus 631 ------~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe 704 (1177)
.|.|.+.. +...+.|+|.|+|+|||++.+++||+
T Consensus 276 ~~~~~~~I~I~~~~----------------------------------------~~~~v~I~V~D~G~GI~~e~l~~iF~ 315 (419)
T 1y8o_A 276 RKEGYPAVKTLVTL----------------------------------------GKEDLSIKISDLGGGVPLRKIDRLFN 315 (419)
T ss_dssp CSSCCCCEEEEEEE----------------------------------------CSSEEEEEEEECSCCCCHHHHGGGGC
T ss_pred cCCCCCCEEEEEEe----------------------------------------CCCEEEEEEEECCCCCCHHHHHHHhC
Confidence 36665421 12247899999999999999999999
Q ss_pred ccccCCCC------CCCCCCccchhHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCC
Q 001044 705 SFEQGDPS------TTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA 758 (1177)
Q Consensus 705 ~F~q~d~s------~~~~~~GtGLGLaIvk~IVe~~GG~I~v~S~~g~GT~f~~~Lpl~~ 758 (1177)
+||+.+.+ ..+..+|+||||+|||++|+.|||+|.++|.+|.||+|+|+||...
T Consensus 316 ~f~~~~~~~~~~~~~~~~~~G~GLGL~I~k~iv~~~gG~I~v~s~~g~Gt~f~i~LP~~~ 375 (419)
T 1y8o_A 316 YMYSTAPRPSLEPTRAAPLAGFGYGLPISRLYARYFQGDLKLYSMEGVGTDAVIYLKALS 375 (419)
T ss_dssp TTTC-------------CC--CTTHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESCG
T ss_pred cccccCCCCCccccCCCCcCCeecCHHHHHHHHHHhCCEEEEEecCCCCEEEEEEecCCC
Confidence 99998765 4455679999999999999999999999999999999999999854
No 10
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=99.97 E-value=5.3e-31 Score=302.33 Aligned_cols=215 Identities=25% Similarity=0.352 Sum_probs=179.7
Q ss_pred HHHHHHHHHhHHhhhhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHH
Q 001044 493 NYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQ 572 (1177)
Q Consensus 493 ~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~l~~~~~dL~ 572 (1177)
+.+.+|++.++|||||||++|.+++++|......+++..+++..|..++.+|..++++++++++.. ..+...++++.
T Consensus 130 ~~~~~~~~~i~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~---~~~~~~~~~l~ 206 (349)
T 3a0r_A 130 SILGEMTARVAHEIRNPITIIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYSKER---QVLEFTEFNLN 206 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHCC----CEEEEEEEHH
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc---cccCCcccCHH
Confidence 456789999999999999999999999876543444456788899999999999999999999943 35677899999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccC-CCeEEEEeeccccCCCCCCCcCC
Q 001044 573 KELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTS-SGHIIIRGWCENLDTSKNTAEFP 651 (1177)
Q Consensus 573 ~li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~-~G~v~v~~~~~~~~~~~~~~~~~ 651 (1177)
+++++++..+...+..+++.+.+++++.. ..+.+|+.+|.|||.|||+||+||++ .|.|.|.+...
T Consensus 207 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~d~~~l~~vl~nLl~NA~k~~~~~~~i~i~~~~~------------ 273 (349)
T 3a0r_A 207 ELIREVYVLFEEKIRKMNIDFCFETDNED-LRVEADRTRIKQVLINLVQNAIEATGENGKIKITSEDM------------ 273 (349)
T ss_dssp HHHHHHHHHHHHHHTTTTCCCEEEESCSC-CEEEECHHHHHHHHHHHHTHHHHTTCTTCCEEEEEEEE------------
T ss_pred HHHHHHHHHHHHHHHHcCcEEEEecCCCC-ceEEeCHHHHHHHHHHHHHHHHHhccCCCEEEEEEEec------------
Confidence 99999999999999999999988876553 46899999999999999999999995 56777654321
Q ss_pred cccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHHHHHHHH
Q 001044 652 TDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 731 (1177)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~IV 731 (1177)
...+.|+|.|+|+|||++.+++||+||++.+ .+|+||||+|||++|
T Consensus 274 ----------------------------~~~~~i~v~D~G~Gi~~~~~~~if~~f~~~~------~~g~GlGL~i~~~~v 319 (349)
T 3a0r_A 274 ----------------------------YTKVRVSVWNSGPPIPEELKEKIFSPFFTTK------TQGTGLGLSICRKII 319 (349)
T ss_dssp ----------------------------TTEEEEEEEEESCCCCGGGGTTTSSSCCCC------------CCCTHHHHHH
T ss_pred ----------------------------CCEEEEEEEECCCCCChHHHhhcCCCCccCC------CCCccchHHHHHHHH
Confidence 1247899999999999999999999999643 459999999999999
Q ss_pred H-HcCCEEEEEEeCCCceEEEEEEecCC
Q 001044 732 N-KMGGEIKVVKKNSPGTLMQLYLLLGA 758 (1177)
Q Consensus 732 e-~~GG~I~v~S~~g~GT~f~~~Lpl~~ 758 (1177)
+ .|||.|.++|.+ +||+|+|.||+..
T Consensus 320 ~~~~gg~i~~~~~~-~Gt~f~i~lP~~~ 346 (349)
T 3a0r_A 320 EDEHGGKIWTENRE-NGVVFIFEIPKTP 346 (349)
T ss_dssp HHTTCSBCCEEECS-SEEEEEEEEESCT
T ss_pred HHhCCCEEEEEeCC-CcEEEEEEecCCC
Confidence 9 899999999986 5999999999854
No 11
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=99.97 E-value=2e-29 Score=277.99 Aligned_cols=196 Identities=15% Similarity=0.181 Sum_probs=147.6
Q ss_pred HHHHHhHHhhhhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHHHHHH
Q 001044 497 QFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELE 576 (1177)
Q Consensus 497 ~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~l~~~~~dL~~li~ 576 (1177)
.+.++|||||||||++|.|++|+|.+. ..++...+.+..|.+++.++..+ ++++++..+. .....++++.++.
T Consensus 48 llas~IaHELrtPL~~I~~~~elL~~~-~~~~~~~~~l~~I~~~~~~~~~l----l~~~r~~~~~-~~~~~~~~~~~l~- 120 (247)
T 4fpp_A 48 MLAARLCHDFISPASAIVSGLDLLEDP-SAQDMRDDAMNLIASSARKLADL----LQFTRVAFGA-SASAENFDSRELE- 120 (247)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCT-TCGGGHHHHHHHHHHHHHHHHHH----HHHHHHHTTC-CSSCCCEEHHHHH-
T ss_pred HHHhccCHHHhHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHHHH----HHHHHHhhcc-ccccccccHHHHH-
Confidence 367889999999999999999998754 34555666788888888776554 5666665443 3345567776543
Q ss_pred HHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccCCC-eEEEEeeccccCCCCCCCcCCcccc
Q 001044 577 ELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG-HIIIRGWCENLDTSKNTAEFPTDRK 655 (1177)
Q Consensus 577 ~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~G-~v~v~~~~~~~~~~~~~~~~~~~~~ 655 (1177)
..+...+..+++++.+++++.. ++..+.|++.||++||+||++.| .|.|.+...
T Consensus 121 ---~~~~~~~~~~~i~l~~~~~~~~------~~~~~~qvl~NLl~NA~~a~~~gg~I~v~~~~~---------------- 175 (247)
T 4fpp_A 121 ---KLAQGVFAHVRPTLDWQIEPQA------MNKPSSRAVLNIAQIAASALPAGGVATVKGVAA---------------- 175 (247)
T ss_dssp ---HHHHHHHTTSSSEEEECCCSCE------ECHHHHHHHHHHHHHHHTTCTTCCEEEEEEEEE----------------
T ss_pred ---HHHHHHHHhhhhhccccccchh------hhHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEE----------------
Confidence 3445566788888887664432 35678999999999999999865 566654321
Q ss_pred cccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCC--CChhhHhhhhcccccCCCCCCCCCCccchhHHHHHHHHHH
Q 001044 656 KFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCG--IDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNK 733 (1177)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~G--I~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~IVe~ 733 (1177)
+ ..+.|+|.|+|+| |+++.++++|++|+.. +.+|+||||+|||+||+.
T Consensus 176 ----------------------~--~~~~i~V~D~G~Gi~i~~~~~~~~f~~~~~~------~~~G~GLGLai~~~iv~~ 225 (247)
T 4fpp_A 176 ----------------------D--GRFSIIADAKGPRARLRPEVLAGLKGEPLAE------GLGGPWVQAAYLNALVRA 225 (247)
T ss_dssp ----------------------T--TEEEEEEEEESTTCCCCHHHHHHHTTCCCCS------SCHHHHHHHHHHHHHHHH
T ss_pred ----------------------C--CEEEEEEEEcCCCCCCCHHHHHHhcCCCCCC------CCCCccHHHHHHHHHHHH
Confidence 1 2356778888866 7788888888888642 356999999999999999
Q ss_pred cCCEEEEEEeCCCceEEEEEEe
Q 001044 734 MGGEIKVVKKNSPGTLMQLYLL 755 (1177)
Q Consensus 734 ~GG~I~v~S~~g~GT~f~~~Lp 755 (1177)
|||+|+++|.+| ||+|+|+||
T Consensus 226 hGG~i~v~s~~~-G~~f~v~LP 246 (247)
T 4fpp_A 226 AGGQIAVEIGED-RASIAAWVP 246 (247)
T ss_dssp TTCEEEEEEETT-EEEEEEEEE
T ss_pred cCCEEEEEEcCC-EEEEEEEec
Confidence 999999999865 999999998
No 12
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=99.93 E-value=4.9e-26 Score=266.41 Aligned_cols=202 Identities=19% Similarity=0.238 Sum_probs=158.1
Q ss_pred HHHHHHHHHhHHhhhhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHH
Q 001044 493 NYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQ 572 (1177)
Q Consensus 493 ~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~l~~~~~dL~ 572 (1177)
..|.+|+++++||||||++.|.++++.+.. ..+.+++.+|.++++++++++. ..+.+++.
T Consensus 8 ~~k~d~l~~~~~el~~~~~~l~~~~~~~~~------------~~i~~~~~~l~~l~~~l~~~~~--------~~~~~~~~ 67 (379)
T 1b3q_A 8 IEKLDNLMDLMGELVIARSRILETLKKYNI------------KELDESLSHLSRITLDLQNVVM--------KIRMVPIS 67 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSCCC------------HHHHHHHHHHHHHHHHHHHHHH--------HHHEEETH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhH------------HHHHHHHHHHHHHHHHHHHHHH--------HcceecHH
Confidence 457789999999999999999998876532 3578899999999999999873 23467778
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHH---HHHHHHHHHHhhHhhcc-------------CCCeEEEEe
Q 001044 573 KELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPG---RVFQIFSNLINNSIKFT-------------SSGHIIIRG 636 (1177)
Q Consensus 573 ~li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~---rL~QIL~NLL~NAIKfT-------------~~G~v~v~~ 636 (1177)
.+++.+...+...+..++.++.+.+.... +..|+. ++.|+|.|||.||+||+ +.|.|.+.+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~v~l~~~~~~---~~~d~~~~~~l~~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~i~~ 144 (379)
T 1b3q_A 68 FVFNRFPRMVRDLAKKMNKEVNFIMRGED---TELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSA 144 (379)
T ss_dssp HHHTTHHHHHHHHHHHTTCCEEEEEECTT---CEEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEEcCCC---eeecHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEEEEE
Confidence 89999999999888887777766665432 356775 55555999999999996 456777765
Q ss_pred eccccCCCCCCCcCCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhH-----------------
Q 001044 637 WCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKW----------------- 699 (1177)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l----------------- 699 (1177)
... ...+.|+|.|+|+||+++.+
T Consensus 145 ~~~----------------------------------------~~~v~i~V~D~G~Gi~~~~~~~~a~~~gl~~~~~~~~ 184 (379)
T 1b3q_A 145 RHE----------------------------------------GNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAAT 184 (379)
T ss_dssp EEE----------------------------------------TTEEEEEEEECSCCCCHHHHHHHHHHSSSCCSTTTTT
T ss_pred EEe----------------------------------------CCEEEEEEEECCCCCCHHHHHHHHHHcCCCChhhhhc
Confidence 321 12478999999999999987
Q ss_pred -------hhhhcccccCCCCCCCCCCccchhHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCC
Q 001044 700 -------ETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA 758 (1177)
Q Consensus 700 -------~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~IVe~~GG~I~v~S~~g~GT~f~~~Lpl~~ 758 (1177)
++||+|||+.... .+..+|+||||+|||++++.|||+|+++|.+|+||+|++.||+..
T Consensus 185 ~~~~~~~~~iF~p~fst~~~-~~~~~G~GlGL~iv~~~v~~~gG~i~v~s~~g~Gt~f~i~lPl~~ 249 (379)
T 1b3q_A 185 LSDQEILNFLFVPGFSTKEK-VSEVSGRGVGMDVVKNVVESLNGSMGIESEKDKGTKVTIRLPLTL 249 (379)
T ss_dssp SCTHHHHSGGGSTTCC------------CCCSHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESSC
T ss_pred CCHHHHHHHhcCCCCccCCc-cCCCCCccccHHHHHHHHHHCCCEEEEEEcCCCCeEEEeccCCcc
Confidence 8899999876543 234579999999999999999999999999999999999999865
No 13
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=99.93 E-value=1e-25 Score=225.05 Aligned_cols=122 Identities=24% Similarity=0.493 Sum_probs=112.4
Q ss_pred CCcEEEEEecChHHHHHHHHHHhhcCCE-EEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001044 1020 EGLRILLAEDTPLIQIVACKILEKVGAT-VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1098 (1177)
Q Consensus 1020 ~g~~ILIVdD~~~~~~~l~~~L~~~G~~-v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~M 1098 (1177)
+++|||||||++.+|..++.+|++.||. |..|.||.+|++.++. .+||+||+|++|
T Consensus 11 k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~-----------------------~~~DlillD~~M 67 (134)
T 3to5_A 11 KNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKK-----------------------GDFDFVVTDWNM 67 (134)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHH-----------------------HCCSEEEEESCC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHh-----------------------CCCCEEEEcCCC
Confidence 3579999999999999999999999996 7789999999999975 379999999999
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001044 1099 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1167 (1177)
Q Consensus 1099 P~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~ 1167 (1177)
|+|||+|++++||+.+. .+++|||++||+...++..+|+++||++||+|||+.++|.++|.+++++
T Consensus 68 P~mdG~el~~~ir~~~~---~~~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~R 133 (134)
T 3to5_A 68 PGMQGIDLLKNIRADEE---LKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFER 133 (134)
T ss_dssp SSSCHHHHHHHHHHSTT---TTTCCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC-
T ss_pred CCCCHHHHHHHHHhCCC---CCCCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 99999999999998643 3679999999999999999999999999999999999999999999875
No 14
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=99.90 E-value=4.4e-23 Score=208.30 Aligned_cols=146 Identities=21% Similarity=0.336 Sum_probs=116.3
Q ss_pred cceeccHHHHHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccCCCeEEEEeeccccCCC
Q 001044 565 ENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTS 644 (1177)
Q Consensus 565 ~~~~~dL~~li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~ 644 (1177)
+.+++||.+++++++..+...+ +++.+.++.+. +..+.+|+.+|.|||.|||+||+||++.|.|.|.+...
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~~--~~~~i~~~~~~--~~~~~~d~~~l~~il~nLl~NA~~~~~~~~I~i~~~~~----- 74 (150)
T 1ysr_A 4 DHVPVDITDLLDRAAHDAARIY--PDLDVSLVPSP--TCIIVGLPAGLRLAVDNAIANAVKHGGATLVQLSAVSS----- 74 (150)
T ss_dssp CCEEEEHHHHHHHHHHHHHHHS--TTCEEEECSCC--CCEEEECHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEE-----
T ss_pred cccccCHHHHHHHHHHHHHHhc--cCCceEEccCC--CceEecCHHHHHHHHHHHHHHHHhcCCCcEEEEEEEec-----
Confidence 4678999999999999887765 45566666543 34689999999999999999999999988777654321
Q ss_pred CCCCcCCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhH
Q 001044 645 KNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGL 724 (1177)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGL 724 (1177)
...+.|+|.|+|+||+++.++++|++|++.+.. +.+|+||||
T Consensus 75 -----------------------------------~~~~~i~v~D~G~gi~~~~~~~if~~f~~~~~~---~~~g~GlGL 116 (150)
T 1ysr_A 75 -----------------------------------RAGVEIAIDDNGSGVPEGERQVVFERFSRGSTA---SHSGSGLGL 116 (150)
T ss_dssp -----------------------------------TTEEEEEEEESSSCCCGGGHHHHHTSCC--------------CCC
T ss_pred -----------------------------------CCEEEEEEEECCCCCCHHHHHHHhcccccCCCC---CCCCCCcCH
Confidence 113789999999999999999999999986532 356999999
Q ss_pred HHHHHHHHHcCCEEEEEEeCCCceEEEEEEecC
Q 001044 725 SIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLG 757 (1177)
Q Consensus 725 aIvk~IVe~~GG~I~v~S~~g~GT~f~~~Lpl~ 757 (1177)
+||+++++.|||+|++++.+++||+|++.||+.
T Consensus 117 ~i~~~~~~~~gG~i~~~~~~~~G~~~~i~lP~~ 149 (150)
T 1ysr_A 117 ALVAQQAQLHGGTASLENSPLGGARLVLRLPGP 149 (150)
T ss_dssp HHHHHHHHHTTCEEEEEECTTSSEEEEEEEECC
T ss_pred HHHHHHHHHcCCEEEEeecCCCCEEEEEEEeCC
Confidence 999999999999999999999999999999974
No 15
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=99.90 E-value=7.1e-23 Score=206.85 Aligned_cols=145 Identities=22% Similarity=0.343 Sum_probs=127.4
Q ss_pred eeccHHHHHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccCCCeEEEEeeccccCCCCC
Q 001044 567 TEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKN 646 (1177)
Q Consensus 567 ~~~dL~~li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~~ 646 (1177)
++++|.+++++++..+...+..+++.+.+++++.. .+.+|+..|.|||.|||+||+||++. .|.|.+...
T Consensus 2 e~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~d~~~l~~il~nLl~NAi~~~~~-~i~i~~~~~------- 71 (152)
T 1id0_A 2 ELHPVAPLLDNLTSALNKVYQRKGVNISLDISPEI--SFVGEQNDFVEVMGNVLDNACKYCLE-FVEISARQT------- 71 (152)
T ss_dssp CEEEHHHHHHHHHHHHHHHTTTTTCEEEEECCTTC--EEESCHHHHHHHHHHHHHHHHHHCSS-EEEEEEEEC-------
T ss_pred CcccHHHHHHHHHHHHHHHHHhCCcEEEEEcCCCc--eEeeCHHHHHHHHHHHHHHHHHhCcC-eEEEEEEec-------
Confidence 57999999999999999999999999999887654 48899999999999999999999976 666554211
Q ss_pred CCcCCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHHH
Q 001044 647 TAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSI 726 (1177)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaI 726 (1177)
...+.|+|.|+|+||+++.++++|++|++.+.. .+|+||||+|
T Consensus 72 ---------------------------------~~~~~i~i~D~G~gi~~~~~~~~f~~~~~~~~~----~~g~GlGL~i 114 (152)
T 1id0_A 72 ---------------------------------DEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTL----RPGQGVGLAV 114 (152)
T ss_dssp ---------------------------------SSCEEEEEEESSSCCCGGGTTGGGSCCCCTTCC----CTTCCSCHHH
T ss_pred ---------------------------------CCEEEEEEEeCCCCcCHHHHHHHhccceeccCC----CCCcccCHHH
Confidence 123779999999999999999999999986543 3699999999
Q ss_pred HHHHHHHcCCEEEEEEeCCCceEEEEEEecCC
Q 001044 727 VRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA 758 (1177)
Q Consensus 727 vk~IVe~~GG~I~v~S~~g~GT~f~~~Lpl~~ 758 (1177)
|+++++.|||+|.+++.++.||+|+|.||+..
T Consensus 115 ~~~~~~~~gG~i~~~~~~~~G~~~~i~lP~~~ 146 (152)
T 1id0_A 115 AREITEQYEGKIVAGESMLGGARMEVIFGRQH 146 (152)
T ss_dssp HHHHHHHTTCEEEEEECTTSSEEEEEEECCCC
T ss_pred HHHHHHHcCCEEEEEeCCCCcEEEEEEEeccc
Confidence 99999999999999999999999999999864
No 16
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=99.90 E-value=9.8e-23 Score=218.47 Aligned_cols=190 Identities=10% Similarity=0.087 Sum_probs=142.4
Q ss_pred HHHHHHHHHhHHhhhhHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccH
Q 001044 493 NYKSQFLANMSHELRTPMAAIIGLLEILKSDDQ-LTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDL 571 (1177)
Q Consensus 493 ~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~-l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~l~~~~~dL 571 (1177)
+.+.++...+.|++++||++|.++++++..... .+++..+.+..+.+.+.++...+.+++... .+.++
T Consensus 26 ~er~~la~~l~~~l~~~L~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~r~~~~~~-----------~~~~l 94 (218)
T 3ehh_A 26 EERQRMARDLVDTLGQKLSLMGLKSDLARKLIYKDPEQAARELKSVQQTARTSLNEVRKIVSSM-----------KGIRL 94 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-----------CCCCH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------CCcCH
Confidence 345678999999999999999999998764322 234455667777777777777777766432 24677
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccCCCeEEEEeeccccCCCCCCCcCC
Q 001044 572 QKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFP 651 (1177)
Q Consensus 572 ~~li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~~~~~~~ 651 (1177)
.+.++.+...+ ..+++.+.++++...+.....++..+.+|+.||++||+||++.|.|.|.+...
T Consensus 95 ~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~~~i~i~~~~~------------ 158 (218)
T 3ehh_A 95 KDELINIKQIL----EAADIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHSQAKTCRVDIQQL------------ 158 (218)
T ss_dssp HHHHHHHHHHH----HHTTCEEECCCCCCCSCCCHHHHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEE------------
T ss_pred HHHHHHHHHHH----HhcCCEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEEe------------
Confidence 77777766554 46788888877654443445788899999999999999999888887765321
Q ss_pred cccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHHHHHHHH
Q 001044 652 TDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 731 (1177)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~IV 731 (1177)
...+.|+|.|+|+||+++.+ +|+||||+||+++|
T Consensus 159 ----------------------------~~~~~i~V~D~G~Gi~~~~~------------------~g~GlGL~~~~~~v 192 (218)
T 3ehh_A 159 ----------------------------WKEVVITVSDDGTFKGEENS------------------FSKGHGLLGMRERL 192 (218)
T ss_dssp ----------------------------TTEEEEEEEESSCCCC--------------------------CHHHHHHHHH
T ss_pred ----------------------------CCEEEEEEEECCcCCCCCCC------------------CCCCCCHHHHHHHH
Confidence 12478999999999999875 48999999999999
Q ss_pred HHcCCEEEEEEeCCCceEEEEEEecC
Q 001044 732 NKMGGEIKVVKKNSPGTLMQLYLLLG 757 (1177)
Q Consensus 732 e~~GG~I~v~S~~g~GT~f~~~Lpl~ 757 (1177)
+.|||+|++.|.+ ||+|+++||+.
T Consensus 193 ~~~gG~i~~~s~~--Gt~~~i~lP~~ 216 (218)
T 3ehh_A 193 EFANGSLHIDTEN--GTKLTMAIPNN 216 (218)
T ss_dssp HHTTCEEEEECSS--SEEEEEEEEC-
T ss_pred HHcCCEEEEeCCC--CeEEEEEEecC
Confidence 9999999999988 99999999974
No 17
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=99.89 E-value=6.5e-23 Score=219.34 Aligned_cols=137 Identities=33% Similarity=0.560 Sum_probs=109.8
Q ss_pred CCcEEEEEecChHHHHHHHHHHhhcCC-EEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001044 1020 EGLRILLAEDTPLIQIVACKILEKVGA-TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1098 (1177)
Q Consensus 1020 ~g~~ILIVdD~~~~~~~l~~~L~~~G~-~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~M 1098 (1177)
.+.+||||||++.++..++.+|++.|+ .|..+.|+.+|++.+....... .. .......+|||||+|+.|
T Consensus 60 ~~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~----~~------~~~~~~~~~dlillD~~l 129 (206)
T 3mm4_A 60 RGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQR----EE------QGSVDKLPFDYIFMDCQM 129 (206)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHH----HH------HTCSSCCSCSEEEEESCC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCCHHHHHHHHHhhcccc----cc------cccccCCCCCEEEEcCCC
Confidence 346999999999999999999999999 8999999999999986421000 00 000012479999999999
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEecCC-CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCC
Q 001044 1099 PKMDGYEATIEIRKSESEHGARNIPIVALTAHA-MNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1169 (1177)
Q Consensus 1099 P~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~-~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~~ 1169 (1177)
|+|||++++++||+.+... .+++|||++|++. ..+...+|+++|+++||.||++ +|..+|++++++..
T Consensus 130 p~~~G~el~~~lr~~~~~~-~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~--~L~~~i~~~l~~~~ 198 (206)
T 3mm4_A 130 PEMDGYEATREIRKVEKSY-GVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSLN--QLANVIREIESKRH 198 (206)
T ss_dssp SSSCHHHHHHHHHHHHHTT-TCCCCEEEEESSCCCHHHHHHHHHHTCSEEEETTCT--THHHHHHHHC----
T ss_pred CCCCHHHHHHHHHhhhhhc-CCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcHH--HHHHHHHHHHhhhH
Confidence 9999999999999864321 2569999999998 7788889999999999999999 89999999886553
No 18
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=99.88 E-value=2.3e-22 Score=209.13 Aligned_cols=152 Identities=29% Similarity=0.482 Sum_probs=124.4
Q ss_pred eccHHHHHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccCC-CeEEEEeeccccCCCCC
Q 001044 568 EFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSS-GHIIIRGWCENLDTSKN 646 (1177)
Q Consensus 568 ~~dL~~li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~-G~v~v~~~~~~~~~~~~ 646 (1177)
+++|.++++++++.+... ..+++.+.+++++. +..+.+|+..|.+||.|||+||+||++. |.+.|.+...
T Consensus 2 ~v~l~~~l~~~~~~~~~~-~~~~i~~~~~~~~~-~~~~~~d~~~l~~il~nLl~NAi~~~~~~~~i~I~i~~~------- 72 (177)
T 3sl2_A 2 WIQIVRFMSLIIDRFEMT-KEQHVEFIRNLPDR-DLYVEIDQDKITQVLDNIISNALKYSPEGGHVTFSIDVN------- 72 (177)
T ss_dssp EEEHHHHHHHHHHHHHTS-SCC--CEEEECCSS-CCEEESCHHHHHHHHHHHHHHHHHTCCTTCCEEEEEEEE-------
T ss_pred eeeHHHHHHHHHHHHHHH-HhcCcEEEEecCCC-CcEEEeCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEc-------
Confidence 689999999999999988 88999999888654 3468999999999999999999999965 5555554211
Q ss_pred CCcCCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHHH
Q 001044 647 TAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSI 726 (1177)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaI 726 (1177)
.....+.|+|.|+|+||+++.++++|++|++.+...+.+.+|+||||+|
T Consensus 73 -------------------------------~~~~~~~i~V~D~G~gi~~~~~~~lf~~~~~~~~~~~~~~~g~GlGL~i 121 (177)
T 3sl2_A 73 -------------------------------EEEELLYISVKDEGIGIPKKDVEKVFDRFYRVDKARTRKLGGTGLGLAI 121 (177)
T ss_dssp -------------------------------TTTTEEEEEEECCSSCCCTTTTTTTTSTTCCCC------CCCCCCHHHH
T ss_pred -------------------------------cCCCEEEEEEEECCCCCCHHHHHHHHhhhccCCCCCCCCCCCCCcCHHH
Confidence 1122478999999999999999999999999877666667899999999
Q ss_pred HHHHHHHcCCEEEEEEeCCCceEEEEEEecCCC
Q 001044 727 VRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGAS 759 (1177)
Q Consensus 727 vk~IVe~~GG~I~v~S~~g~GT~f~~~Lpl~~~ 759 (1177)
|+++++.|||+|.+.+.++.||+|+|.||+...
T Consensus 122 v~~~~~~~~G~i~i~~~~~~Gt~~~i~lP~~~~ 154 (177)
T 3sl2_A 122 AKEMVQAHGGDIWADSIEGKGTTITFTLPYKEE 154 (177)
T ss_dssp HHHHHHHTTCCEEEEEETTTEEEEEEEEEEEC-
T ss_pred HHHHHHHcCCEEEEEecCCCCeEEEEEEeCCCC
Confidence 999999999999999999999999999998643
No 19
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=99.88 E-value=5.7e-22 Score=199.76 Aligned_cols=147 Identities=27% Similarity=0.398 Sum_probs=125.5
Q ss_pred ccceeccHHHHHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccC-CCeEEEEeeccccC
Q 001044 564 LENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTS-SGHIIIRGWCENLD 642 (1177)
Q Consensus 564 l~~~~~dL~~li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~-~G~v~v~~~~~~~~ 642 (1177)
++.++++|.+++++++..+...+..+++++.+++++. +..+.+|+..|.+||.|||+||+||++ .|.|.|.+..
T Consensus 1 l~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~i~~d~~~l~~il~nll~NAi~~~~~~~~I~i~~~~---- 75 (152)
T 3a0y_A 1 MEFTEFNLNELIREVYVLFEEKIRKMNIDFCFETDNE-DLRVEADRTRIKQVLINLVQNAIEATGENGKIKITSED---- 75 (152)
T ss_dssp CCCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESCS-SCEEEECHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEE----
T ss_pred CccEEecHHHHHHHHHHHHHHHHHHcCcEEEEecCCC-CcEEEECHHHHHHHHHHHHHHHHHhcCCCCEEEEEEEe----
Confidence 3567899999999999999999999999999987654 346899999999999999999999995 5666665421
Q ss_pred CCCCCCcCCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccch
Q 001044 643 TSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 722 (1177)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGL 722 (1177)
....+.|+|.|+|+||+++.++++|++|++.+ .+|+||
T Consensus 76 ------------------------------------~~~~~~i~i~D~G~g~~~~~~~~~f~~~~~~~------~~g~Gl 113 (152)
T 3a0y_A 76 ------------------------------------MYTKVRVSVWNSGPPIPEELKEKIFSPFFTTK------TQGTGL 113 (152)
T ss_dssp ------------------------------------CSSEEEEEEEEESCCCCGGGTTGGGSTTCCCC--------CCCC
T ss_pred ------------------------------------cCCEEEEEEEeCCCCcCHHHHHhHhhhhccCC------CCCCCc
Confidence 11247899999999999999999999999643 358999
Q ss_pred hHHHHHHHHH-HcCCEEEEEEeCCCceEEEEEEecCC
Q 001044 723 GLSIVRTLVN-KMGGEIKVVKKNSPGTLMQLYLLLGA 758 (1177)
Q Consensus 723 GLaIvk~IVe-~~GG~I~v~S~~g~GT~f~~~Lpl~~ 758 (1177)
||++||++++ .|||++.+++.+ .||+|++.||+..
T Consensus 114 GL~i~~~~~~~~~gg~~~~~~~~-~g~~~~i~lP~~~ 149 (152)
T 3a0y_A 114 GLSICRKIIEDEHGGKIWTENRE-NGVVFIFEIPKTP 149 (152)
T ss_dssp SHHHHHHHHHTTTSCEEEEEEET-TEEEEEEEEESCC
T ss_pred CHHHHHHHHHHhCCcEEEEecCC-CCEEEEEEeCCCC
Confidence 9999999999 999999999986 5999999999853
No 20
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=99.88 E-value=3.8e-22 Score=204.05 Aligned_cols=149 Identities=26% Similarity=0.402 Sum_probs=123.4
Q ss_pred cccceeccHHHHHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccCCCeEEEEeeccccC
Q 001044 563 ELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLD 642 (1177)
Q Consensus 563 ~l~~~~~dL~~li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~ 642 (1177)
+++.+++||.+++++++..+. .++..+.+++... +..+.+|+.+|.|||.|||+||+||+ .|.|.|.+...
T Consensus 4 ~~~~~~~~l~~~~~~~~~~~~----~~~~~i~~~~~~~-~~~v~~d~~~l~~il~nll~NAik~~-~~~I~i~~~~~--- 74 (161)
T 1bxd_A 4 EMPMEMADLNAVLGEVIAAES----GYEREIETALYPG-SIEVKMHPLSIKRAVANMVVNAARYG-NGWIKVSSGTE--- 74 (161)
T ss_dssp CCCSEEECHHHHHHHHHHHHC----SSSCCEEEECCSS-CCCEEECHHHHHHHHHHHHHHHHTTC-CSCEEEEEEEE---
T ss_pred cccccccCHHHHHHHHHHHhh----hhcceEEEEecCC-CceEEECHHHHHHHHHHHHHHHHhhc-CCeEEEEEEEc---
Confidence 466789999999999998753 2444555554333 34689999999999999999999999 78887765321
Q ss_pred CCCCCCcCCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccch
Q 001044 643 TSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 722 (1177)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGL 722 (1177)
...+.|+|.|+|+||+++.++++|++||+.+.. +..+|+||
T Consensus 75 -------------------------------------~~~~~i~i~D~G~gi~~~~~~~~f~~f~~~~~~--~~~~g~Gl 115 (161)
T 1bxd_A 75 -------------------------------------PNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSA--RTISGTGL 115 (161)
T ss_dssp -------------------------------------TTEEEEEEEEESSCSCTTGGGCSSCCCCCCSCC--CCCCCCSC
T ss_pred -------------------------------------CCEEEEEEEeCCCCCCHHHHHHhCCCceeCCCC--CCCCCccc
Confidence 124779999999999999999999999997654 23479999
Q ss_pred hHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCCC
Q 001044 723 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGAS 759 (1177)
Q Consensus 723 GLaIvk~IVe~~GG~I~v~S~~g~GT~f~~~Lpl~~~ 759 (1177)
||+|||++++.|||+|.+++.++.||+|++.||+...
T Consensus 116 GL~i~~~~~~~~gG~i~~~~~~~~G~~~~i~lP~~~~ 152 (161)
T 1bxd_A 116 GLAIVQRIVDNHNGMLELGTSERGGLSIRAWLPVPVT 152 (161)
T ss_dssp CCCTTHHHHHHHTSEEEEEEETTTEEEEEEEECCCSC
T ss_pred CHHHHHHHHHHcCCEEEEEECCCCeEEEEEEEeCCcc
Confidence 9999999999999999999999999999999998653
No 21
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=99.88 E-value=3.7e-22 Score=202.70 Aligned_cols=156 Identities=29% Similarity=0.460 Sum_probs=108.8
Q ss_pred cccceeccHHHHHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccC--CCeEEEEeeccc
Q 001044 563 ELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTS--SGHIIIRGWCEN 640 (1177)
Q Consensus 563 ~l~~~~~dL~~li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~--~G~v~v~~~~~~ 640 (1177)
.++.++++|.+++++++..+... ..+++++.+++++..+ .+.+|+.+|.||+.|||+||+||++ .|.|.|.+....
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~-~i~~d~~~l~~il~nLl~NAik~~~~~~~~I~i~~~~~~ 79 (160)
T 1r62_A 2 PGTRVTESIHKVAERVVTLVSME-LPDNVRLIRDYDPSLP-ELAHDPDQIEQVLLNIVRNALQALGPEGGEIILRTRTAF 79 (160)
T ss_dssp ---CEEECHHHHHHHHHHHHTTT-CCTTEEEEEECCTTCC-CEEECHHHHHHHHHHHHHHHHHHHGGGCEEEEEEEEEEE
T ss_pred CCccccCCHHHHHHHHHHHHHhh-cccCcEEEEEcCCCCC-eeeeCHHHHHHHHHHHHHHHHHHhhccCCeEEEEEeccc
Confidence 45678999999999999998887 8889999998877655 4899999999999999999999997 566776653221
Q ss_pred cCCCCCCCcCCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCcc
Q 001044 641 LDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGT 720 (1177)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~Gt 720 (1177)
... . ....+...+.|+|.|+|+||+++.++++|++|++.+ .+|+
T Consensus 80 ~~~-----------------------------~-~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~~~~~------~~g~ 123 (160)
T 1r62_A 80 QLT-----------------------------L-HGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGR------EGGT 123 (160)
T ss_dssp EEE-----------------------------E-TTEEEEEEEEEEEEEECTTC--------------------------
T ss_pred ccc-----------------------------c-cccccccEEEEEEEeCCCCCCHHHHHHhhCccccCC------CCCC
Confidence 000 0 000112257899999999999999999999999643 3589
Q ss_pred chhHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecC
Q 001044 721 GLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLG 757 (1177)
Q Consensus 721 GLGLaIvk~IVe~~GG~I~v~S~~g~GT~f~~~Lpl~ 757 (1177)
||||++|+++++.|||+|.++|.+++ |+|+|.||+.
T Consensus 124 GlGL~i~~~~~~~~gG~l~i~s~~~~-~~~~i~lP~~ 159 (160)
T 1r62_A 124 GLGLSIARNLIDQHSGKIEFTSWPGH-TEFSVYLPIR 159 (160)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEEETTE-EEEEEEEEEE
T ss_pred ccCHHHHHHHHHHCCCeEEEEeCCCC-EEEEEEEecc
Confidence 99999999999999999999999876 9999999974
No 22
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.87 E-value=2e-20 Score=207.40 Aligned_cols=124 Identities=19% Similarity=0.353 Sum_probs=112.4
Q ss_pred CcEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1100 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~ 1100 (1177)
..+||||||++.++..+...|++.|+.|..+.||++|++.+.. ..+||+||+|++||+
T Consensus 124 ~~~ILivDD~~~~~~~l~~~L~~~~~~v~~a~~~~eal~~l~~----------------------~~~~dlvllD~~mP~ 181 (259)
T 3luf_A 124 QIEVLVVDDSRTSRHRTMAQLRKQLLQVHEASHAREALATLEQ----------------------HPAIRLVLVDYYMPE 181 (259)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH----------------------CTTEEEEEECSCCSS
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhc----------------------CCCCCEEEEcCCCCC
Confidence 3699999999999999999999999999999999999999864 124899999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCC
Q 001044 1101 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1169 (1177)
Q Consensus 1101 mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~~ 1169 (1177)
|||++++++||+..+. .++|||++|++...+...+|+++||++||.||++.++|..+|+++++...
T Consensus 182 ~dG~~l~~~lr~~~~~---~~~~ii~~s~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~ 247 (259)
T 3luf_A 182 IDGISLVRMLRERYSK---QQLAIIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSHNLEALE 247 (259)
T ss_dssp SCHHHHHHHHHHHCCT---TTSEEEEEECSSSSSHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhccCC---CCCeEEEEEccCCHHHHHHHHhcChhheEcCCCCHHHHHHHHHHHHHhHh
Confidence 9999999999986432 46999999999999999999999999999999999999999999886543
No 23
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=99.86 E-value=4.9e-23 Score=202.36 Aligned_cols=115 Identities=19% Similarity=0.328 Sum_probs=102.8
Q ss_pred CCcEEEEEecChHHHHHHHHHHhhcCCEEE-EEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001044 1020 EGLRILLAEDTPLIQIVACKILEKVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1098 (1177)
Q Consensus 1020 ~g~~ILIVdD~~~~~~~l~~~L~~~G~~v~-~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~M 1098 (1177)
+.+|||||||++.++..++.+|++.||+|. +|.||++|++.++. .+||+||+|++|
T Consensus 7 r~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~-----------------------~~~DlvllDi~m 63 (123)
T 2lpm_A 7 RRLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARK-----------------------GQFDIAIIDVNL 63 (123)
T ss_dssp CCCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHH-----------------------CCSSEEEECSSS
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-----------------------CCCCEEEEecCC
Confidence 357999999999999999999999999986 79999999999974 479999999999
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001044 1099 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1167 (1177)
Q Consensus 1099 P~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~ 1167 (1177)
|+|||+|++++||+. ++|||++||+.+.+. +.++|+++||.|||+.++|..+|.++.++
T Consensus 64 P~~~G~el~~~lr~~-------~ipvI~lTa~~~~~~---~~~~g~~~yl~KP~~~~~L~~~l~~~~~~ 122 (123)
T 2lpm_A 64 DGEPSYPVADILAER-------NVPFIFATGYGSKGL---DTRYSNIPLLTKPFLDSELEAVLVQISKE 122 (123)
T ss_dssp SSCCSHHHHHHHHHT-------CCSSCCBCTTCTTSC---CSSSCSCSCBCSSSSHHHHHHHHSTTCSC
T ss_pred CCCCHHHHHHHHHcC-------CCCEEEEecCccHHH---HHhCCCCcEEECCCCHHHHHHHHHHHHhh
Confidence 999999999999962 489999999886543 45789999999999999999999887764
No 24
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=99.85 E-value=2.1e-21 Score=204.05 Aligned_cols=150 Identities=20% Similarity=0.279 Sum_probs=120.0
Q ss_pred ceeccHHHHHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhcc-------------CCCeE
Q 001044 566 NTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFT-------------SSGHI 632 (1177)
Q Consensus 566 ~~~~dL~~li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT-------------~~G~v 632 (1177)
.++++|.++++++...+...+..+++.+.++++.........+..++.|+|.|||+||+||+ ..|.|
T Consensus 2 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~il~nLl~NAik~~~~~~~~~~~~~~~~~~~I 81 (189)
T 1i58_A 2 SHMVPISFVFNRFPRMVRDLAKKMNKEVNFIMRGEDTELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTL 81 (189)
T ss_dssp CSEEETHHHHTTHHHHHHHHHHHTTCCEEEEEECTTCEEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHTSCSSEEE
T ss_pred CeEecHHHHHHHHHHHHHHHHHHhCCcEEEEEcCCcccccHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCeE
Confidence 35899999999999999999999998888877654322222344556667999999999996 34566
Q ss_pred EEEeeccccCCCCCCCcCCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhH-------------
Q 001044 633 IIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKW------------- 699 (1177)
Q Consensus 633 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l------------- 699 (1177)
.|.+... ...+.|+|.|+|+||+++.+
T Consensus 82 ~I~~~~~----------------------------------------~~~~~i~V~D~G~Gi~~~~~~~~~~~~~~~~~~ 121 (189)
T 1i58_A 82 ILSARHE----------------------------------------GNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDES 121 (189)
T ss_dssp EEEEEEE----------------------------------------TTEEEEEEEECSSCCCHHHHHHHHHHTTSSCHH
T ss_pred EEEEEec----------------------------------------CCEEEEEEEeCCCCcCHHHHhhhhhhccchhhh
Confidence 6654211 12478999999999999987
Q ss_pred -----------hhhhcccccCCCCCCCCCCccchhHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEec
Q 001044 700 -----------ETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 756 (1177)
Q Consensus 700 -----------~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~IVe~~GG~I~v~S~~g~GT~f~~~Lpl 756 (1177)
+++|+|||+.... .+..+|+||||+||+++++.|||+|.++|.+++||+|++.||+
T Consensus 122 ~~~~~~~~~~~~~if~~~~~~~~~-~~~~~g~GlGL~iv~~~~~~~~G~i~i~s~~~~Gt~~~i~lPl 188 (189)
T 1i58_A 122 KAATLSDQEILNFLFVPGFSTKEK-VSEVSGRGVGMDVVKNVVESLNGSISIESEKDKGTKVTIRLPL 188 (189)
T ss_dssp HHTTCCHHHHHGGGGSTTCSHHHH-HHGGGTCCCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEEC
T ss_pred hhcccchhhhHHHhcCCccccccc-CCCCCCCccCHHHHHHHHHHcCCEEEEEeCCCCceEEEEEEeC
Confidence 9999999976432 2234689999999999999999999999999999999999997
No 25
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=99.84 E-value=4.1e-20 Score=179.81 Aligned_cols=119 Identities=27% Similarity=0.465 Sum_probs=110.2
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1101 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~m 1101 (1177)
.+||||||++..+..++.+|++.||+|..+.||.+|++.+.. .+||+||+|++||+|
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~-----------------------~~~dlvllD~~~p~~ 59 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSE-----------------------FTPDLIVLXIMMPVM 59 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTT-----------------------BCCSEEEECSCCSSS
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHh-----------------------cCCCEEEEeccCCCC
Confidence 489999999999999999999999999999999999998853 479999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1166 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~ 1166 (1177)
||++++++||+... .+++|||++|++...+...+++++|+++||.||++.++|..+|+++++
T Consensus 60 ~g~~~~~~l~~~~~---~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 60 DGFTVLKKLQEKEE---WKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp CHHHHHHHHHTSTT---TTTSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHhccc---ccCCCEEEEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 99999999997542 256999999999999999999999999999999999999999998875
No 26
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=99.83 E-value=1.1e-19 Score=180.33 Aligned_cols=125 Identities=22% Similarity=0.383 Sum_probs=112.4
Q ss_pred CcEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1100 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~ 1100 (1177)
..+||||||++..+..++.+|+..||.|..+.|+.+|++.+.. ..||+||+|+.||+
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-----------------------~~~dlvl~D~~lp~ 60 (136)
T 3t6k_A 4 PHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYK-----------------------NLPDALICDVLLPG 60 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------------------SCCSEEEEESCCSS
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh-----------------------CCCCEEEEeCCCCC
Confidence 4689999999999999999999999999999999999999864 37999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCCCC
Q 001044 1101 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSE 1171 (1177)
Q Consensus 1101 mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~~~~ 1171 (1177)
|||++++++||+... .+++|||++|++.+.+...+++++|+++||.||++.++|..+|++++++....
T Consensus 61 ~~g~~~~~~lr~~~~---~~~~pii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~~~~~ 128 (136)
T 3t6k_A 61 IDGYTLCKRVRQHPL---TKTLPILMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILARTTIE 128 (136)
T ss_dssp SCHHHHHHHHHHSGG---GTTCCEEEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHcCCC---cCCccEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhccCCC
Confidence 999999999998533 25699999999999999999999999999999999999999999999876543
No 27
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=99.82 E-value=2.2e-19 Score=177.30 Aligned_cols=126 Identities=33% Similarity=0.554 Sum_probs=110.0
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCC-EEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGA-TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1100 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~-~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~ 1100 (1177)
++||||||++.++..++.+|+..|+ .|..+.+|.+|++.+..... ...+||+||+|++||+
T Consensus 3 ~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~------------------~~~~~dlvllD~~mp~ 64 (133)
T 2r25_B 3 VKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTS------------------KGENYNMIFMDVQMPK 64 (133)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHH------------------HTCCCSEEEECSCCSS
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHh------------------cCCCCCEEEEeCCCCC
Confidence 5899999999999999999999997 48899999999998864210 0136999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCC
Q 001044 1101 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1169 (1177)
Q Consensus 1101 mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~~ 1169 (1177)
|||++++++||+... ..+|||++|++...+...+|+++|+++||.||++.++|..+|.+++....
T Consensus 65 ~~G~~~~~~lr~~~~----~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~~ 129 (133)
T 2r25_B 65 VDGLLSTKMIRRDLG----YTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAAYQ 129 (133)
T ss_dssp SCHHHHHHHHHHHSC----CCSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCTTC-
T ss_pred CChHHHHHHHHhhcC----CCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhhc
Confidence 999999999997421 35899999999999999999999999999999999999999999886553
No 28
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=99.82 E-value=2.9e-18 Score=189.42 Aligned_cols=120 Identities=28% Similarity=0.591 Sum_probs=111.7
Q ss_pred CCcEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001044 1020 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1099 (1177)
Q Consensus 1020 ~g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP 1099 (1177)
.+++||||||++.++..+..+|++.||+|..+.||.+|++.+.. .+||+||||++||
T Consensus 128 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~-----------------------~~~dlvl~D~~mp 184 (254)
T 2ayx_A 128 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSK-----------------------NHIDIVLSDVNMP 184 (254)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHH-----------------------SCCSEEEEEESSC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh-----------------------CCCCEEEEcCCCC
Confidence 46799999999999999999999999999999999999999964 3699999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001044 1100 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1167 (1177)
Q Consensus 1100 ~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~ 1167 (1177)
+|||++++++||+.. +++|||++|++.+.+...+|+++||++||.||++.++|..+|.+++++
T Consensus 185 ~~~G~~l~~~ir~~~-----~~~piI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 247 (254)
T 2ayx_A 185 NMDGYRLTQRIRQLG-----LTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAER 247 (254)
T ss_dssp SSCCHHHHHHHHHHH-----CCSCEEEEESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhcC-----CCCcEEEEECCCCHHHHHHHHHcCCceEEECCCCHHHHHHHHHHHHHH
Confidence 999999999999864 359999999999999999999999999999999999999999988754
No 29
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.81 E-value=1.9e-20 Score=210.73 Aligned_cols=120 Identities=23% Similarity=0.307 Sum_probs=109.7
Q ss_pred CcEEEEEecChHHHHHHHHHHhhcCCEEE-EEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEKVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1099 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~~G~~v~-~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP 1099 (1177)
+.+||+|||++.++..++.+|+..||.|. .|.||.+|++.+.. .+|||||||++||
T Consensus 160 ~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~~-----------------------~~~dlvl~D~~MP 216 (286)
T 3n0r_A 160 ATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVTR-----------------------RTPGLVLADIQLA 216 (286)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-----------------------CCCSEEEEESCCT
T ss_pred CCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHHh-----------------------CCCCEEEEcCCCC
Confidence 45899999999999999999999999999 99999999999974 3799999999999
Q ss_pred -CCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCCCC
Q 001044 1100 -KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSE 1171 (1177)
Q Consensus 1100 -~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~~~~ 1171 (1177)
+|||+|++++||+.. ++|||++||+. ++..+|+++|||+||+||++.++|..+|.++++.....
T Consensus 217 d~mdG~e~~~~ir~~~------~~piI~lT~~~--~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~~~~~~ 281 (286)
T 3n0r_A 217 DGSSGIDAVKDILGRM------DVPVIFITAFP--ERLLTGERPEPTFLITKPFQPETVKAAIGQALFFHPRR 281 (286)
T ss_dssp TSCCTTTTTHHHHHHT------TCCEEEEESCG--GGGCCSSSCCCSSEEESSCCHHHHHHHHHHHHHHSCCC
T ss_pred CCCCHHHHHHHHHhcC------CCCEEEEeCCH--HHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHhCCcc
Confidence 899999999999863 59999999985 45778999999999999999999999999999876543
No 30
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=99.81 E-value=2.4e-19 Score=173.61 Aligned_cols=117 Identities=32% Similarity=0.471 Sum_probs=109.1
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1101 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~m 1101 (1177)
.+||||||++..+..++.+|++.||+|..+.++.+|++.+.. .+||+||+|+.||+|
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-----------------------~~~dlii~D~~~p~~ 59 (120)
T 3f6p_A 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEE-----------------------LQPDLILLDIMLPNK 59 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHT-----------------------TCCSEEEEETTSTTT
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhh-----------------------CCCCEEEEeCCCCCC
Confidence 489999999999999999999999999999999999999863 479999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1167 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~ 1167 (1177)
||++++++||+. .++|||++|++.......+++++|+++||.||++.++|..+|++++++
T Consensus 60 ~g~~~~~~lr~~------~~~~ii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~~ 119 (120)
T 3f6p_A 60 DGVEVCREVRKK------YDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRR 119 (120)
T ss_dssp HHHHHHHHHHTT------CCSCEEEEEESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHhc------CCCCEEEEECCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHhc
Confidence 999999999963 248999999999999999999999999999999999999999998865
No 31
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=99.81 E-value=2.7e-19 Score=175.36 Aligned_cols=124 Identities=22% Similarity=0.433 Sum_probs=111.0
Q ss_pred CCcEEEEEecChHHHHHHHHHHhhcCCE-EEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001044 1020 EGLRILLAEDTPLIQIVACKILEKVGAT-VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1098 (1177)
Q Consensus 1020 ~g~~ILIVdD~~~~~~~l~~~L~~~G~~-v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~M 1098 (1177)
.+++||||||++..+..++.+|++.|+. +..+.++.+|++.+.. ..+||+||+|++|
T Consensus 4 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~----------------------~~~~dlvi~D~~~ 61 (129)
T 3h1g_A 4 GSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDA----------------------NADTKVLITDWNM 61 (129)
T ss_dssp --CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHH----------------------CTTCCEEEECSCC
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHh----------------------CCCCCEEEEeCCC
Confidence 3568999999999999999999999995 8999999999998864 2369999999999
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1099 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1099 P~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
|+|||++++++||+... .+++|||++|++.+.+...+|+++|+++||.||++.++|..+|++++++.
T Consensus 62 p~~~g~~~~~~lr~~~~---~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~~~ 128 (129)
T 3h1g_A 62 PEMNGLDLVKKVRSDSR---FKEIPIIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGTN 128 (129)
T ss_dssp SSSCHHHHHHHHHTSTT---CTTCCEEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHCCC
T ss_pred CCCCHHHHHHHHHhcCC---CCCCeEEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhccC
Confidence 99999999999997532 25699999999999999999999999999999999999999999988653
No 32
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=99.81 E-value=2.8e-19 Score=178.97 Aligned_cols=127 Identities=27% Similarity=0.515 Sum_probs=108.6
Q ss_pred cCCcEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001044 1019 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1098 (1177)
Q Consensus 1019 ~~g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~M 1098 (1177)
.++++||||||++..+..++.+|++.|+.|..+.++++|++.+.. .+||+||+|+.|
T Consensus 12 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-----------------------~~~dlvl~D~~m 68 (143)
T 3m6m_D 12 VRSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAE-----------------------EDYDAVIVDLHM 68 (143)
T ss_dssp ---CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHH-----------------------SCCSEEEEESCC
T ss_pred cccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhc-----------------------CCCCEEEEeCCC
Confidence 356899999999999999999999999999999999999999864 379999999999
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCC
Q 001044 1099 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1169 (1177)
Q Consensus 1099 P~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~~ 1169 (1177)
|+|||++++++||+.... ..+.+|||++|++.+.+...+|+++|+++||.||++.++|..+|.++.....
T Consensus 69 p~~~g~~~~~~lr~~~~~-~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~~~~ 138 (143)
T 3m6m_D 69 PGMNGLDMLKQLRVMQAS-GMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVSTR 138 (143)
T ss_dssp SSSCHHHHHHHHHHHHHT-TCCCCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC----
T ss_pred CCCCHHHHHHHHHhchhc-cCCCCeEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHHhhh
Confidence 999999999999975322 2356899999999999999999999999999999999999999999876543
No 33
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=99.78 E-value=6.7e-19 Score=184.27 Aligned_cols=119 Identities=18% Similarity=0.265 Sum_probs=109.4
Q ss_pred CCcEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001044 1020 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1099 (1177)
Q Consensus 1020 ~g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP 1099 (1177)
.+.+||||||++..+..++.+|+..||.|..|.||.+|++.+.. .+||+||+|+.||
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-----------------------~~~dlvl~D~~lp 62 (184)
T 3rqi_A 6 SDKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGA-----------------------EKFEFITVXLHLG 62 (184)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHTT-----------------------SCCSEEEECSEET
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh-----------------------CCCCEEEEeccCC
Confidence 35799999999999999999999999999999999999998852 4799999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001044 1100 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1166 (1177)
Q Consensus 1100 ~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~ 1166 (1177)
+|||++++++||+.. +++|||++|++.+.+...+|+++|+++||.||++.++|..+|.++++
T Consensus 63 ~~~g~~~~~~l~~~~-----~~~~ii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~~ 124 (184)
T 3rqi_A 63 NDSGLSLIAPLCDLQ-----PDARILVLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNAS 124 (184)
T ss_dssp TEESHHHHHHHHHHC-----TTCEEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTHH
T ss_pred CccHHHHHHHHHhcC-----CCCCEEEEeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHH
Confidence 999999999999853 46999999999999999999999999999999999999999977654
No 34
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=99.77 E-value=6.8e-18 Score=170.92 Aligned_cols=124 Identities=31% Similarity=0.444 Sum_probs=113.4
Q ss_pred CcEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1100 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~ 1100 (1177)
+.+||||||++..+..++.+|+..||.|..+.++.+|++.+.. .+||+||+|+.||+
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~-----------------------~~~dlii~D~~l~~ 63 (154)
T 3gt7_A 7 AGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSL-----------------------TRPDLIISDVLMPE 63 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTT-----------------------CCCSEEEEESCCSS
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh-----------------------CCCCEEEEeCCCCC
Confidence 4699999999999999999999999999999999999998853 47999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCCC
Q 001044 1101 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPS 1170 (1177)
Q Consensus 1101 mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~~~ 1170 (1177)
++|++++++||+... .+.+|||++|+....+...+|+++|+++||.||++.++|..+|.+++++...
T Consensus 64 ~~g~~~~~~lr~~~~---~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 130 (154)
T 3gt7_A 64 MDGYALCRWLKGQPD---LRTIPVILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGVKR 130 (154)
T ss_dssp SCHHHHHHHHHHSTT---TTTSCEEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHhCCC---cCCCCEEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 999999999998532 3569999999999999999999999999999999999999999999865533
No 35
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=99.77 E-value=3.9e-18 Score=164.89 Aligned_cols=121 Identities=34% Similarity=0.515 Sum_probs=105.1
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1101 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~m 1101 (1177)
.+||||||++..+..++.+|+..|+.+..+.++.+|++.+.. .+||+||+|+.||+|
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~-----------------------~~~dlvi~D~~l~~~ 58 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARE-----------------------NKPDLILMDIQLPEI 58 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHH-----------------------HCCSEEEEESBCSSS
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhc-----------------------CCCCEEEEeCCCCCC
Confidence 489999999999999999999999999999999999998864 269999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
+|++++++||+... .+++|||++|++...+...+++++|+++||.||++.++|..+|.+++++.
T Consensus 59 ~g~~~~~~l~~~~~---~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 122 (124)
T 1mb3_A 59 SGLEVTKWLKEDDD---LAHIPVVAVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLERQ 122 (124)
T ss_dssp BHHHHHHHHHHSTT---TTTSCEEEEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHcCcc---ccCCcEEEEECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhcC
Confidence 99999999997532 25699999999998888899999999999999999999999999988654
No 36
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=99.77 E-value=7.4e-18 Score=164.03 Aligned_cols=120 Identities=18% Similarity=0.296 Sum_probs=110.4
Q ss_pred CcEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1100 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~ 1100 (1177)
+.+||||||++..+..++.+|+..|+.+..+.++.+|++.+.. .+||+||+|+.||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-----------------------~~~dlvi~D~~l~~ 59 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPD-----------------------VRNGVLVTDLRMPD 59 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGG-----------------------CCSEEEEEECCSTT
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhc-----------------------CCCCEEEEECCCCC
Confidence 3589999999999999999999999999999999999998753 46999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1101 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1101 mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
|+|++++++||+.. +++|||++|++...+...+++++|+++||.||++.++|..+|++++++.
T Consensus 60 ~~g~~~~~~l~~~~-----~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 122 (126)
T 1dbw_A 60 MSGVELLRNLGDLK-----INIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEHL 122 (126)
T ss_dssp SCHHHHHHHHHHTT-----CCCCEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHhcC-----CCCCEEEEECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHhh
Confidence 99999999999752 4689999999999999999999999999999999999999999988654
No 37
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=99.77 E-value=3.3e-18 Score=167.96 Aligned_cols=126 Identities=20% Similarity=0.356 Sum_probs=103.5
Q ss_pred ceeccHHHHHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccCCCeEEEEeeccccCCCC
Q 001044 566 NTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSK 645 (1177)
Q Consensus 566 ~~~~dL~~li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~ 645 (1177)
.+.++|.+++++++..+ ..+++.+.++++...+.....|+..|.||+.||++||+||++.|.|.|.+..
T Consensus 2 ~~~~~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~NA~k~~~~~~i~i~~~~------- 70 (129)
T 3zxo_A 2 AMVTRLRQRIDAAVAQF----ADSGLRTSVQFVGPLSVVDSALADQAEAVVREAVSNAVRHAAASTLTVRVKV------- 70 (129)
T ss_dssp ---CCHHHHHHHHHHHH----SCTTSEEEEEEESCGGGSCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEEE-------
T ss_pred CccccHHHHHHHHHHHH----hhcCceEEEEecCCcccCCHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEE-------
Confidence 35789999999988876 6677888777766544334456889999999999999999988888776531
Q ss_pred CCCcCCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHH
Q 001044 646 NTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLS 725 (1177)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLa 725 (1177)
+ .. +.|+|.|+|+||+++. +||||+
T Consensus 71 --------------------------------~-~~-~~i~v~D~G~gi~~~~---------------------~GlGL~ 95 (129)
T 3zxo_A 71 --------------------------------D-DD-LCIEVTDNGRGMPDEF---------------------TGSGLT 95 (129)
T ss_dssp --------------------------------S-SE-EEEEEEECCCCCTTTT---------------------CSHHHH
T ss_pred --------------------------------c-CC-EEEEEecCCCCCCccc---------------------CCcCHH
Confidence 1 22 7799999999998765 599999
Q ss_pred HHHHHHHHcCCEEEEEEeCC-CceEEEEEEecC
Q 001044 726 IVRTLVNKMGGEIKVVKKNS-PGTLMQLYLLLG 757 (1177)
Q Consensus 726 Ivk~IVe~~GG~I~v~S~~g-~GT~f~~~Lpl~ 757 (1177)
|||++++.|||+|.+.+.++ +|++|++.||+.
T Consensus 96 i~~~~~~~~gG~i~~~~~~~~~G~~~~i~lP~~ 128 (129)
T 3zxo_A 96 NLRQRAEQAGGEFTLASMPGASGTVLRWSAPLS 128 (129)
T ss_dssp HHHHHHHHTTCEEEEEECTTTCCEEEEEEEESC
T ss_pred HHHHHHHHcCCEEEEeeCCCCCcEEEEEEecCC
Confidence 99999999999999999999 999999999974
No 38
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=99.77 E-value=2e-18 Score=170.08 Aligned_cols=125 Identities=13% Similarity=0.082 Sum_probs=99.4
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccCCCeEEEEeeccccCCCCCCC
Q 001044 569 FDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTA 648 (1177)
Q Consensus 569 ~dL~~li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~~~~ 648 (1177)
++|.+.++.+. ..+..+++++.++.+...+.....++..+.|++.||++||+||++.+.|.|.+...
T Consensus 2 v~l~~~l~~~~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~~~i~i~~~~~--------- 68 (128)
T 3ehg_A 2 IRLKDELINIK----QILEAADIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHSQAKTCRVDIQQL--------- 68 (128)
T ss_dssp CCHHHHHHHHH----HHHHHTTCEEECCCCSCCSCCCHHHHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEE---------
T ss_pred ccHHHHHHHHH----HHHHHcCCEEEEEcCccccccCHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEEe---------
Confidence 45555555554 44567888888877654443345688999999999999999999888887765321
Q ss_pred cCCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHHHHH
Q 001044 649 EFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVR 728 (1177)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk 728 (1177)
...+.|+|.|+|+||+++.+ +|+||||++||
T Consensus 69 -------------------------------~~~~~i~V~D~G~Gi~~~~~------------------~g~GlGL~~~~ 99 (128)
T 3ehg_A 69 -------------------------------WKEVVITVSDDGTFKGEENS------------------FSKGHGLLGMR 99 (128)
T ss_dssp -------------------------------TTEEEEEEEESSCCCSCSSC------------------CCTTSHHHHHH
T ss_pred -------------------------------CCEEEEEEEECCcCcCcccC------------------CCCCccHHHHH
Confidence 12478999999999998765 47899999999
Q ss_pred HHHHHcCCEEEEEEeCCCceEEEEEEecC
Q 001044 729 TLVNKMGGEIKVVKKNSPGTLMQLYLLLG 757 (1177)
Q Consensus 729 ~IVe~~GG~I~v~S~~g~GT~f~~~Lpl~ 757 (1177)
++++.|||+|+++|.+ ||+|+++||+.
T Consensus 100 ~~~~~~gG~i~~~s~~--Gt~~~i~lP~~ 126 (128)
T 3ehg_A 100 ERLEFANGSLHIDTEN--GTKLTMAIPNN 126 (128)
T ss_dssp HHHHHTTCEEEEECSS--SEEEEEEEEC-
T ss_pred HHHHHcCCEEEEEeCC--CEEEEEEEecC
Confidence 9999999999999988 99999999974
No 39
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=99.77 E-value=7.5e-18 Score=163.31 Aligned_cols=119 Identities=24% Similarity=0.395 Sum_probs=109.5
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1101 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~m 1101 (1177)
.+||||||++..+..++.+|+..|+.|..+.++.+|++.+.. .+||+||+|+.||++
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~-----------------------~~~dlvl~D~~l~~~ 60 (124)
T 1srr_A 4 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTK-----------------------ERPDLVLLDMKIPGM 60 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH-----------------------HCCSEEEEESCCTTC
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhc-----------------------cCCCEEEEecCCCCC
Confidence 489999999999999999999999999999999999999864 269999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
+|++++++||+.. +++|||++|++...+...+++++|+++||.||++.++|..+|+++++..
T Consensus 61 ~g~~~~~~l~~~~-----~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 122 (124)
T 1srr_A 61 DGIEILKRMKVID-----ENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLPLK 122 (124)
T ss_dssp CHHHHHHHHHHHC-----TTCEEEEEESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSCC-
T ss_pred CHHHHHHHHHHhC-----CCCCEEEEEccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHhccc
Confidence 9999999999752 4689999999999999999999999999999999999999999887643
No 40
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=99.76 E-value=9.5e-18 Score=161.44 Aligned_cols=119 Identities=26% Similarity=0.401 Sum_probs=109.6
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1101 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~m 1101 (1177)
++||||||++..+..+..+|+..|+.|..+.++.+|++.+.. ..||+|++|+.||+|
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~-----------------------~~~dlil~D~~l~~~ 57 (121)
T 2pl1_A 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNE-----------------------HIPDIAIVDLGLPDE 57 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------------------SCCSEEEECSCCSSS
T ss_pred CeEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhc-----------------------cCCCEEEEecCCCCC
Confidence 379999999999999999999999999999999999998864 369999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
+|++++++||+.. +++|||++|++...+...+++++|+++|+.||++.++|..+|++++++.
T Consensus 58 ~g~~~~~~l~~~~-----~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 119 (121)
T 2pl1_A 58 DGLSLIRRWRSND-----VSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 (121)
T ss_dssp CHHHHHHHHHHTT-----CCSCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcC-----CCCCEEEEecCCCHHHHHHHHHcCccceEECCCCHHHHHHHHHHHHHhh
Confidence 9999999999642 4589999999999999999999999999999999999999999987653
No 41
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=99.76 E-value=8.5e-18 Score=165.32 Aligned_cols=118 Identities=23% Similarity=0.350 Sum_probs=109.4
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1101 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~m 1101 (1177)
.+||||||++..+..++.+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+|
T Consensus 4 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-----------------------~~~dlvl~D~~l~~~ 60 (132)
T 3crn_A 4 KRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIEN-----------------------EFFNLALFXIKLPDM 60 (132)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------------------SCCSEEEECSBCSSS
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhc-----------------------CCCCEEEEecCCCCC
Confidence 589999999999999999999999999999999999998864 369999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1167 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~ 1167 (1177)
+|++++++||+.. +++|||++|++...+...+++++|+++||.||++.++|..+|++++++
T Consensus 61 ~g~~~~~~l~~~~-----~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~ 121 (132)
T 3crn_A 61 EGTELLEKAHKLR-----PGMKKIMVTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLDE 121 (132)
T ss_dssp BHHHHHHHHHHHC-----TTSEEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhhC-----CCCcEEEEeccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHhc
Confidence 9999999999752 358999999999999999999999999999999999999999988754
No 42
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=99.76 E-value=1e-17 Score=161.14 Aligned_cols=116 Identities=26% Similarity=0.471 Sum_probs=106.9
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCCE-EEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGAT-VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1100 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~~-v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~ 1100 (1177)
.+||||||++..+..++.+|+..||. +..+.++.+|++.+.. .+||+||+|+.||+
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~-----------------------~~~dlil~D~~l~~ 59 (120)
T 1tmy_A 3 KRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKE-----------------------LKPDIVTMDITMPE 59 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-----------------------HCCSEEEEECSCGG
T ss_pred ceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHh-----------------------cCCCEEEEeCCCCC
Confidence 58999999999999999999999999 5689999999999864 26999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHh
Q 001044 1101 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLT 1165 (1177)
Q Consensus 1101 mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~ 1165 (1177)
++|++++++||+.. +++|||++|++...+...+++++|+++||.||++.++|..+|++++
T Consensus 60 ~~g~~~~~~l~~~~-----~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 60 MNGIDAIKEIMKID-----PNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp GCHHHHHHHHHHHC-----TTCCEEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHhhC-----CCCeEEEEeCCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHh
Confidence 99999999999753 3589999999999999999999999999999999999999998875
No 43
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=99.76 E-value=1.3e-17 Score=162.27 Aligned_cols=121 Identities=22% Similarity=0.456 Sum_probs=109.0
Q ss_pred CcEEEEEecChHHHHHHHHHHhhcCC-EEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEKVGA-TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1099 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~~G~-~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP 1099 (1177)
+++||||||++..+..++.+|+..|+ .+..+.++.+|++.+.. .+||+||+|+.||
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~-----------------------~~~dlvi~D~~l~ 60 (128)
T 1jbe_A 4 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-----------------------GGYGFVISDWNMP 60 (128)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTT-----------------------CCCCEEEEESCCS
T ss_pred ccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHh-----------------------cCCCEEEEeCCCC
Confidence 46899999999999999999999999 79999999999998842 4699999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001044 1100 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1167 (1177)
Q Consensus 1100 ~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~ 1167 (1177)
+|+|++++++||+... .+++|||++|+....+...+++++|+++||.||++.++|..+|+++++.
T Consensus 61 ~~~g~~l~~~l~~~~~---~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~ 125 (128)
T 1jbe_A 61 NMDGLELLKTIRAXXA---MSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125 (128)
T ss_dssp SSCHHHHHHHHHC--C---CTTCCEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhcc---cCCCcEEEEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHHHH
Confidence 9999999999997432 2568999999999999999999999999999999999999999988754
No 44
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=99.76 E-value=4.6e-18 Score=168.65 Aligned_cols=126 Identities=17% Similarity=0.214 Sum_probs=111.9
Q ss_pred CcEEEEEecChHHHHHHHHHHhh-cCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEK-VGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1099 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~-~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP 1099 (1177)
..+||||||++..+..++.+|+. .|++|..+.++.+|++.+.. ..+||+||+|+.||
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~----------------------~~~~dlvi~D~~l~ 61 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKD----------------------LDSITLIIMDIAFP 61 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTT----------------------CCCCSEEEECSCSS
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhc----------------------CCCCcEEEEeCCCC
Confidence 46999999999999999999999 99999999999999998742 14799999999999
Q ss_pred -CCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCCCC
Q 001044 1100 -KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSE 1171 (1177)
Q Consensus 1100 -~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~~~~ 1171 (1177)
+++|++++++||+... .+++|||++|+..+.+...+++++|+++||.||++.++|..+|.+++++....
T Consensus 62 ~~~~g~~~~~~l~~~~~---~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~~ 131 (140)
T 3lua_A 62 VEKEGLEVLSAIRNNSR---TANTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKICQRF 131 (140)
T ss_dssp SHHHHHHHHHHHHHSGG---GTTCCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC----
T ss_pred CCCcHHHHHHHHHhCcc---cCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhcccc
Confidence 9999999999998432 25699999999999999999999999999999999999999999999876553
No 45
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=99.75 E-value=2e-17 Score=158.76 Aligned_cols=117 Identities=27% Similarity=0.461 Sum_probs=108.4
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1101 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~m 1101 (1177)
.+||||||++..+..++.+|+..|+.+..+.++.+|++.+.. .+||+||+|+.||++
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~-----------------------~~~dlvl~D~~l~~~ 58 (120)
T 2a9o_A 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEA-----------------------EQPDIIILDLMLPEI 58 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------------------HCCSEEEECSSCSSS
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHh-----------------------CCCCEEEEeccCCCC
Confidence 379999999999999999999999999999999999998864 269999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1167 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~ 1167 (1177)
+|++++++||+. +++|||++|++.......+++++|+++||.||++.++|..+|++++++
T Consensus 59 ~g~~~~~~l~~~------~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (120)
T 2a9o_A 59 DGLEVAKTIRKT------SSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 (120)
T ss_dssp CHHHHHHHHHHH------CCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHhC------CCCCEEEEecCCchHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHcc
Confidence 999999999963 358999999999998899999999999999999999999999998765
No 46
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=99.75 E-value=2e-17 Score=159.62 Aligned_cols=117 Identities=27% Similarity=0.423 Sum_probs=108.5
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1101 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~m 1101 (1177)
.+||||||++..+..+..+|+..|+.+..+.++.+|++.+.. ..||+||+|+.||++
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-----------------------~~~dlvi~d~~l~~~ 59 (122)
T 1zgz_A 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQN-----------------------QSVDLILLDINLPDE 59 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------------------SCCSEEEEESCCSSS
T ss_pred cEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHhc-----------------------CCCCEEEEeCCCCCC
Confidence 489999999999999999999999999999999999998864 369999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1167 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~ 1167 (1177)
+|++++++||+. +++|||++|++...+...+++++|+++||.||++.++|..+|++++++
T Consensus 60 ~g~~~~~~l~~~------~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 119 (122)
T 1zgz_A 60 NGLMLTRALRER------STVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 (122)
T ss_dssp CHHHHHHHHHTT------CCCEEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHhc------CCCCEEEEECCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHHHH
Confidence 999999999972 358999999999999999999999999999999999999999998765
No 47
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=99.75 E-value=1.4e-17 Score=164.24 Aligned_cols=125 Identities=19% Similarity=0.452 Sum_probs=108.1
Q ss_pred CCcEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001044 1020 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1099 (1177)
Q Consensus 1020 ~g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP 1099 (1177)
.+.+||||||++..+..++.+|+..|+.|..+.++.+|++.+.. .+ |+||+|+.||
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~-----------------------~~-dlvllD~~lp 61 (136)
T 1dcf_A 6 TGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSH-----------------------EH-KVVFMDVCMP 61 (136)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCCT-----------------------TC-SEEEEECCSS
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhc-----------------------cC-CEEEEeCCCC
Confidence 46799999999999999999999999999999999999987732 24 9999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1100 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1100 ~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
+|||++++++||+..+.......|||++|++...+...+|+++|+++||.||++.++|..+|++++++.
T Consensus 62 ~~~g~~~~~~l~~~~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 130 (136)
T 1dcf_A 62 GVENYQIALRIHEKFTKQRHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEPR 130 (136)
T ss_dssp TTTTTHHHHHHHHHHC-CCSCCCEEEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHSCC
T ss_pred CCcHHHHHHHHHHhhhhccCCCceEEEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhchh
Confidence 999999999999532211112246889999999999999999999999999999999999999998654
No 48
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=99.75 E-value=1.2e-17 Score=183.37 Aligned_cols=121 Identities=26% Similarity=0.395 Sum_probs=112.1
Q ss_pred CCcEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001044 1020 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1099 (1177)
Q Consensus 1020 ~g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP 1099 (1177)
...+||||||++..+..++.+|+..||+|..+.|+.+|++.+.. .+||+||+|++||
T Consensus 22 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-----------------------~~~dlvllD~~lp 78 (250)
T 3r0j_A 22 PEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARE-----------------------TRPDAVILDVXMP 78 (250)
T ss_dssp SSCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------------------HCCSEEEEESCCS
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh-----------------------CCCCEEEEeCCCC
Confidence 34799999999999999999999999999999999999999865 2699999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1100 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1100 ~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
+|||++++++||+.. +++|||++|++.+.+...+|+++|+++||.||++.++|..+|+.++++.
T Consensus 79 ~~~g~~~~~~lr~~~-----~~~~ii~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~ 142 (250)
T 3r0j_A 79 GMDGFGVLRRLRADG-----IDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRA 142 (250)
T ss_dssp SSCHHHHHHHHHHTT-----CCCCEEEEECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhcC-----CCCCEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhh
Confidence 999999999999753 4689999999999999999999999999999999999999999998653
No 49
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=99.75 E-value=2.1e-17 Score=159.69 Aligned_cols=117 Identities=25% Similarity=0.391 Sum_probs=108.8
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1101 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~m 1101 (1177)
.+||||||++..+..++.+|+..|+.|..+.++.+|++.+.. .+||+||+|+.||++
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~-----------------------~~~dlvi~D~~l~~~ 60 (123)
T 1xhf_A 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE-----------------------YDINLVIMDINLPGK 60 (123)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH-----------------------SCCSEEEECSSCSSS
T ss_pred ceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHhc-----------------------CCCCEEEEcCCCCCC
Confidence 489999999999999999999999999999999999998864 369999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1167 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~ 1167 (1177)
+|++++++||+. +++|||++|++.......+++++|+++||.||++.++|..+|++++++
T Consensus 61 ~g~~~~~~l~~~------~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 120 (123)
T 1xhf_A 61 NGLLLARELREQ------ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 (123)
T ss_dssp CHHHHHHHHHHH------CCCEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhC------CCCcEEEEECCCChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 999999999975 248999999999999999999999999999999999999999988765
No 50
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=99.75 E-value=1.7e-17 Score=163.48 Aligned_cols=122 Identities=23% Similarity=0.386 Sum_probs=107.8
Q ss_pred cEEEEEecChHHHHHHHHHHhhcC--CEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVG--ATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1099 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G--~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP 1099 (1177)
.+||||||++..+..++.+|+..| +.+..+.++.+|++.+.. .+||+||+|+.||
T Consensus 4 ~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~-----------------------~~~dlvilD~~lp 60 (133)
T 3b2n_A 4 TSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEE-----------------------YNPNVVILDIEMP 60 (133)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHH-----------------------HCCSEEEECSSCS
T ss_pred eEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhh-----------------------cCCCEEEEecCCC
Confidence 589999999999999999999887 567889999999999864 2699999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCCCC
Q 001044 1100 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSE 1171 (1177)
Q Consensus 1100 ~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~~~~ 1171 (1177)
+|+|++++++||+.. +++|||++|++...+...+++++|+++||.||++.++|..+|++++++....
T Consensus 61 ~~~g~~~~~~l~~~~-----~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~ 127 (133)
T 3b2n_A 61 GMTGLEVLAEIRKKH-----LNIKVIIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNGEKEG 127 (133)
T ss_dssp SSCHHHHHHHHHHTT-----CSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC-----
T ss_pred CCCHHHHHHHHHHHC-----CCCcEEEEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCCCcc
Confidence 999999999999742 4699999999999999999999999999999999999999999998765443
No 51
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=99.75 E-value=6.6e-18 Score=167.29 Aligned_cols=124 Identities=27% Similarity=0.452 Sum_probs=111.8
Q ss_pred CcEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1100 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~ 1100 (1177)
..+||||||++..+..++.+|++.||.|..+.++.+|++.+.. .+||+||+|+.||+
T Consensus 6 ~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~-----------------------~~~dlvi~d~~l~~ 62 (140)
T 3grc_A 6 RPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVAR-----------------------RPYAAMTVDLNLPD 62 (140)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHH-----------------------SCCSEEEECSCCSS
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHh-----------------------CCCCEEEEeCCCCC
Confidence 4699999999999999999999999999999999999999964 36999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHH-HHHHcCCCEEEECCCCHHHHHHHHHHHhhcCCC
Q 001044 1101 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEK-KCLGVGMNAYLTKPIDSERMVSTILRLTKNMPS 1170 (1177)
Q Consensus 1101 mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~-~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~~~ 1170 (1177)
++|++++++||+... .+++|||++|+....+... +++++|+++||.||++.++|..+|.+++++...
T Consensus 63 ~~g~~~~~~l~~~~~---~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~~~~ 130 (140)
T 3grc_A 63 QDGVSLIRALRRDSR---TRDLAIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNMAE 130 (140)
T ss_dssp SCHHHHHHHHHTSGG---GTTCEEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHhCcc---cCCCCEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHhcCC
Confidence 999999999998432 2569999999998877777 899999999999999999999999999976543
No 52
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=99.75 E-value=2.7e-17 Score=165.41 Aligned_cols=127 Identities=28% Similarity=0.418 Sum_probs=109.5
Q ss_pred CcEEEEEecChHHHHHHHHHHhhcCC--EEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEKVGA--TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1098 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~~G~--~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~M 1098 (1177)
..+||||||++..+..++.+|+..|+ .|..+.+|.+|++.+.... .......||+||+|+.|
T Consensus 8 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~----------------~~~~~~~~dlillD~~l 71 (149)
T 1i3c_A 8 PKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQG----------------EYENSPRPNLILLDLNL 71 (149)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCG----------------GGTTCCCCSEEEECSCC
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhcc----------------ccccCCCCCEEEEeCCC
Confidence 46899999999999999999999887 8999999999999885210 00001469999999999
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001044 1099 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1166 (1177)
Q Consensus 1099 P~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~ 1166 (1177)
|+|||++++++||+... .+++|||++|+....+...+++++|+++||.||++.++|..+|+++.+
T Consensus 72 p~~~g~~l~~~l~~~~~---~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 136 (149)
T 1i3c_A 72 PKKDGREVLAEIKQNPD---LKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIES 136 (149)
T ss_dssp SSSCHHHHHHHHHHCTT---TTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHhCcC---cCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 99999999999997532 246999999999999999999999999999999999999999998875
No 53
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=99.75 E-value=2.1e-17 Score=166.39 Aligned_cols=129 Identities=25% Similarity=0.403 Sum_probs=110.6
Q ss_pred CcEEEEEecChHHHHHHHHHHhhcCC--EEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEKVGA--TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1098 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~~G~--~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~M 1098 (1177)
+++||||||++..+..++.+|+..|+ .|..+.++.+|++.++.... .......+||+||+|+.|
T Consensus 4 ~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~--------------~~~~~~~~~dliilD~~l 69 (152)
T 3heb_A 4 SVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDK--------------SGRVSAGRAQLVLLDLNL 69 (152)
T ss_dssp -CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTS--------------SSGGGTTCBEEEEECSBC
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhcccc--------------ccccccCCCCEEEEeCCC
Confidence 46999999999999999999999998 89999999999999862100 000013579999999999
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001044 1099 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1166 (1177)
Q Consensus 1099 P~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~ 1166 (1177)
|+|+|++++++||+... .+++|||++|+....+...+++++|+++||.||++.++|..+|+++.+
T Consensus 70 ~~~~g~~~~~~lr~~~~---~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 134 (152)
T 3heb_A 70 PDMTGIDILKLVKENPH---TRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGL 134 (152)
T ss_dssp SSSBHHHHHHHHHHSTT---TTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHhccc---ccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 99999999999998532 356999999999999999999999999999999999999999988764
No 54
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=99.75 E-value=1.5e-17 Score=162.51 Aligned_cols=121 Identities=28% Similarity=0.443 Sum_probs=103.9
Q ss_pred CCcEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001044 1020 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1099 (1177)
Q Consensus 1020 ~g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP 1099 (1177)
.+.+||||||++..+..++.+|+..|+.+..+.++.+|++.+.. .+||+||+|+.||
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-----------------------~~~dlvi~d~~l~ 62 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGG-----------------------FTPDLMICDIAMP 62 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTT-----------------------CCCSEEEECCC--
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhc-----------------------CCCCEEEEecCCC
Confidence 45799999999999999999999999999999999999998853 4799999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHHhhcC
Q 001044 1100 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPI-DSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1100 ~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~-~~~~L~~~I~~l~~~~ 1168 (1177)
+++|++++++||+.. +++|||++|++...+...+++++|+++||.||+ +.++|..+|++++++.
T Consensus 63 ~~~g~~~~~~l~~~~-----~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~~ 127 (130)
T 3eod_A 63 RMNGLKLLEHIRNRG-----DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 (130)
T ss_dssp ---CHHHHHHHHHTT-----CCCCEEEEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHhcC-----CCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhchh
Confidence 999999999999752 468999999999999999999999999999999 9999999999998754
No 55
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=99.74 E-value=9e-18 Score=163.72 Aligned_cols=121 Identities=24% Similarity=0.413 Sum_probs=110.1
Q ss_pred CcEEEEEecChHHHHHHHHHHhhcCC-EEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEKVGA-TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1099 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~~G~-~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP 1099 (1177)
..+||||||++..+..++.+|+..|+ .+..+.++.+|++.+.. .+||+||+|+.||
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~-----------------------~~~dlvl~D~~l~ 62 (129)
T 1p6q_A 6 KIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQ-----------------------NPHHLVISDFNMP 62 (129)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHT-----------------------SCCSEEEECSSSC
T ss_pred cCeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHc-----------------------CCCCEEEEeCCCC
Confidence 35899999999999999999999999 88999999999998863 4699999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001044 1100 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1167 (1177)
Q Consensus 1100 ~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~ 1167 (1177)
+++|++++++||+... .+++|||++|++...+...+++++|+++||.||++.++|..+|++++++
T Consensus 63 ~~~g~~~~~~l~~~~~---~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (129)
T 1p6q_A 63 KMDGLGLLQAVRANPA---TKKAAFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFGA 127 (129)
T ss_dssp SSCHHHHHHHHTTCTT---STTCEEEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHhcCcc---ccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 9999999999997532 2569999999999999999999999999999999999999999998764
No 56
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=99.74 E-value=1.8e-17 Score=162.21 Aligned_cols=122 Identities=21% Similarity=0.360 Sum_probs=108.9
Q ss_pred cEEEEEecChHHHHHHHHHHhhc-CCEEE-EEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKV-GATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1099 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~-G~~v~-~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP 1099 (1177)
.+||||||++..+..++.+|+.. |+.+. .+.++.+|++.+.. .+||+||+|+.||
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~~-----------------------~~~dlvllD~~l~ 59 (130)
T 1dz3_A 3 IKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEE-----------------------KRPDILLLDIIMP 59 (130)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHH-----------------------HCCSEEEEESCCS
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhc-----------------------CCCCEEEEecCCC
Confidence 58999999999999999999987 88875 79999999999864 2699999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCCC
Q 001044 1100 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPS 1170 (1177)
Q Consensus 1100 ~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~~~ 1170 (1177)
+|+|++++++||+.. .+.+|||++|++...+...+++++|+++||.||++.++|..+|++++++...
T Consensus 60 ~~~g~~~~~~l~~~~----~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~~~ 126 (130)
T 1dz3_A 60 HLDGLAVLERIRAGF----EHQPNVIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGKTTP 126 (130)
T ss_dssp SSCHHHHHHHHHHHC----SSCCEEEEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHCC--
T ss_pred CCCHHHHHHHHHhcC----CCCCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcCCCC
Confidence 999999999999731 1358999999999999999999999999999999999999999999877643
No 57
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=99.74 E-value=1.9e-17 Score=168.22 Aligned_cols=122 Identities=21% Similarity=0.412 Sum_probs=111.1
Q ss_pred CCcEEEEEecChHHHHHHHHHHhhcCCEEE-EEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001044 1020 EGLRILLAEDTPLIQIVACKILEKVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1098 (1177)
Q Consensus 1020 ~g~~ILIVdD~~~~~~~l~~~L~~~G~~v~-~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~M 1098 (1177)
..++||||||++..+..++.+|+..|+.+. .+.++.+|++.+... ...||+||+|+.|
T Consensus 35 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~---------------------~~~~dliilD~~l 93 (157)
T 3hzh_A 35 IPFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNH---------------------YPNIDIVTLXITM 93 (157)
T ss_dssp EECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH---------------------GGGCCEEEECSSC
T ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhc---------------------CCCCCEEEEeccC
Confidence 347999999999999999999999999998 999999999999752 1158999999999
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001044 1099 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1167 (1177)
Q Consensus 1099 P~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~ 1167 (1177)
|+++|++++++||+.. +.+|||++|+..+.+...+++++|+++||.||++.++|..+|.+++++
T Consensus 94 ~~~~g~~~~~~lr~~~-----~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~ 157 (157)
T 3hzh_A 94 PKMDGITCLSNIMEFD-----KNARVIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVFVK 157 (157)
T ss_dssp SSSCHHHHHHHHHHHC-----TTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTTCC
T ss_pred CCccHHHHHHHHHhhC-----CCCcEEEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcC
Confidence 9999999999999753 468999999999999999999999999999999999999999988753
No 58
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=99.74 E-value=3.4e-17 Score=161.31 Aligned_cols=124 Identities=18% Similarity=0.246 Sum_probs=111.1
Q ss_pred CcEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1100 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~ 1100 (1177)
..+||||||++..+..++.+|+..|++|..+.++.+|+..+.. ..+||+||+|+.||+
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~----------------------~~~~dlvi~D~~l~~ 64 (136)
T 3hdv_A 7 RPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHY----------------------QKRIGLMITDLRMQP 64 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHH----------------------CTTEEEEEECSCCSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHh----------------------CCCCcEEEEeccCCC
Confidence 4699999999999999999999999999999999999998864 234999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCCC
Q 001044 1101 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPS 1170 (1177)
Q Consensus 1101 mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~~~ 1170 (1177)
++|++++++||+.. .+++|||++|+..+.+...+++++|+++||.||++.++|..+|+++..+...
T Consensus 65 ~~g~~~~~~l~~~~----~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 130 (136)
T 3hdv_A 65 ESGLDLIRTIRASE----RAALSIIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIGEG 130 (136)
T ss_dssp SCHHHHHHHHHTST----TTTCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHhcC----CCCCCEEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCchh
Confidence 99999999999753 2469999999999999999999999999999999999999999999876644
No 59
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=99.74 E-value=8.8e-18 Score=163.51 Aligned_cols=121 Identities=21% Similarity=0.289 Sum_probs=107.9
Q ss_pred CcEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1100 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~ 1100 (1177)
..+||||||++..+..++.+|+..||.|..+.++.+|++.+.. .+||+||+|+.||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-----------------------~~~dlii~D~~l~~ 59 (127)
T 3i42_A 3 LQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMST-----------------------RGYDAVFIDLNLPD 59 (127)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHH-----------------------SCCSEEEEESBCSS
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHh-----------------------cCCCEEEEeCCCCC
Confidence 3589999999999999999999999999999999999999964 36999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1101 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1101 mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
++|++++++||+... .+++|||++|+....+. .+++.+|+++||.||++.++|.+++....++.
T Consensus 60 ~~g~~~~~~l~~~~~---~~~~~ii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 123 (127)
T 3i42_A 60 TSGLALVKQLRALPM---EKTSKFVAVSGFAKNDL-GKEACELFDFYLEKPIDIASLEPILQSIEGHH 123 (127)
T ss_dssp SBHHHHHHHHHHSCC---SSCCEEEEEECC-CTTC-CHHHHHHCSEEEESSCCHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHhhhc---cCCCCEEEEECCcchhH-HHHHHHhhHHheeCCCCHHHHHHHHHHhhccC
Confidence 999999999998632 25699999999998887 88999999999999999999999999887655
No 60
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=99.74 E-value=7.7e-18 Score=166.52 Aligned_cols=122 Identities=10% Similarity=0.165 Sum_probs=111.5
Q ss_pred CcEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1100 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~ 1100 (1177)
..+||||||++..+..++.+|+..||+|..+.++.+|++.+. ..+||+||+|+.||+
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-----------------------~~~~dlvi~D~~l~~ 62 (136)
T 3kto_A 6 HPIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQI-----------------------SDDAIGMIIEAHLED 62 (136)
T ss_dssp -CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCC-----------------------CTTEEEEEEETTGGG
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHh-----------------------ccCCCEEEEeCcCCC
Confidence 368999999999999999999999999999999999998774 347999999999999
Q ss_pred --CCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCCC
Q 001044 1101 --MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPS 1170 (1177)
Q Consensus 1101 --mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~~~ 1170 (1177)
++|++++++||+.. +++|||++|++...+...+++++|+++||.||++.++|..+|.++.++...
T Consensus 63 ~~~~g~~~~~~l~~~~-----~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~~~ 129 (136)
T 3kto_A 63 KKDSGIELLETLVKRG-----FHLPTIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGAKE 129 (136)
T ss_dssp BTTHHHHHHHHHHHTT-----CCCCEEEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHHC-
T ss_pred CCccHHHHHHHHHhCC-----CCCCEEEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhccCC
Confidence 99999999999853 469999999999999999999999999999999999999999999876644
No 61
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=99.74 E-value=8e-18 Score=168.13 Aligned_cols=123 Identities=12% Similarity=0.189 Sum_probs=112.3
Q ss_pred CCcEEEEEecChHHHHHHHHHHhhcC-CEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCC-CCccEEEEeCC
Q 001044 1020 EGLRILLAEDTPLIQIVACKILEKVG-ATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDT-PRFDLILMDCQ 1097 (1177)
Q Consensus 1020 ~g~~ILIVdD~~~~~~~l~~~L~~~G-~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~DLIlmDi~ 1097 (1177)
.+.+||||||++..+..++.+|+..| |.|..+.++.+|+..+.. . .+||+||+|+.
T Consensus 19 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~----------------------~~~~~dlvi~D~~ 76 (146)
T 4dad_A 19 GMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTD----------------------GLDAFDILMIDGA 76 (146)
T ss_dssp GGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHH----------------------HHTTCSEEEEECT
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHh----------------------cCCCCCEEEEeCC
Confidence 45799999999999999999999999 999999999999887643 1 37999999999
Q ss_pred CCCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCC
Q 001044 1098 MPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1169 (1177)
Q Consensus 1098 MP~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~~ 1169 (1177)
||+|+|++++++||+.. +.+|||++|+..+.+...+|+++|+++||.||++.++|..+|.+++++..
T Consensus 77 l~~~~g~~~~~~l~~~~-----~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 143 (146)
T 4dad_A 77 ALDTAELAAIEKLSRLH-----PGLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQCA 143 (146)
T ss_dssp TCCHHHHHHHHHHHHHC-----TTCEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHTCC
T ss_pred CCCccHHHHHHHHHHhC-----CCCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhhhc
Confidence 99999999999999853 46999999999999999999999999999999999999999999998753
No 62
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=99.74 E-value=2.4e-17 Score=163.23 Aligned_cols=119 Identities=21% Similarity=0.330 Sum_probs=109.3
Q ss_pred CcEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1100 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~ 1100 (1177)
..+||||||++..+..+..+|+..|+.|..+.++.+|++.+.. ..||+||+|+.||+
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-----------------------~~~dlvllD~~l~~ 60 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFS-----------------------NKYDLIFLEIILSD 60 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH-----------------------CCCSEEEEESEETT
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh-----------------------cCCCEEEEeCCCCC
Confidence 3589999999999999999999999999999999999998864 36999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1101 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1101 mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
++|++++++||+.. .+|||++|+....+...+++++|+++||.||++.++|..+|++++++.
T Consensus 61 ~~g~~l~~~l~~~~------~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 122 (136)
T 2qzj_A 61 GDGWTLCKKIRNVT------TCPIVYMTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRRM 122 (136)
T ss_dssp EEHHHHHHHHHTTC------CCCEEEEESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHccCC------CCCEEEEEcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHh
Confidence 99999999999642 489999999999999999999999999999999999999999887543
No 63
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=99.74 E-value=2.8e-17 Score=162.92 Aligned_cols=121 Identities=30% Similarity=0.481 Sum_probs=108.6
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1101 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~m 1101 (1177)
.+||||||++..+..+..+|+..|+.|..+.++.+|++.+.. ..||+||+|+.||++
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~-----------------------~~~dlvi~D~~l~~~ 60 (138)
T 3c3m_A 4 YTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNA-----------------------TPPDLVLLDIMMEPM 60 (138)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------------------SCCSEEEEESCCSSS
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHhc-----------------------cCCCEEEEeCCCCCC
Confidence 589999999999999999999999999999999999998864 369999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
||++++++||+... ..++|||++|+.........++.+|+++||.||++.++|..+|.+++++.
T Consensus 61 ~g~~~~~~l~~~~~---~~~~~ii~ls~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~~ 124 (138)
T 3c3m_A 61 DGWETLERIKTDPA---TRDIPVLMLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLARR 124 (138)
T ss_dssp CHHHHHHHHHHSTT---TTTSCEEEEESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHcCcc---cCCCCEEEEECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHHh
Confidence 99999999997532 24699999999987777777788889999999999999999999988654
No 64
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=99.74 E-value=3.4e-17 Score=165.27 Aligned_cols=120 Identities=22% Similarity=0.313 Sum_probs=111.1
Q ss_pred CCcEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001044 1020 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1099 (1177)
Q Consensus 1020 ~g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP 1099 (1177)
...+||||||++..+..+..+|+..||.|..+.++.+|++.+.. .+||+||+|+.||
T Consensus 13 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-----------------------~~~dlvi~D~~l~ 69 (153)
T 3hv2_A 13 RRPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLAS-----------------------REVDLVISAAHLP 69 (153)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHH-----------------------SCCSEEEEESCCS
T ss_pred CCceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHc-----------------------CCCCEEEEeCCCC
Confidence 35799999999999999999999999999999999999999964 3799999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcC-CCEEEECCCCHHHHHHHHHHHhhc
Q 001044 1100 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG-MNAYLTKPIDSERMVSTILRLTKN 1167 (1177)
Q Consensus 1100 ~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG-~d~yL~KP~~~~~L~~~I~~l~~~ 1167 (1177)
+++|++++++||+.. +++|||++|+....+...+++++| +++||.||++.++|..+|.+++++
T Consensus 70 ~~~g~~~~~~l~~~~-----~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~~ 133 (153)
T 3hv2_A 70 QMDGPTLLARIHQQY-----PSTTRILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEH 133 (153)
T ss_dssp SSCHHHHHHHHHHHC-----TTSEEEEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHhHC-----CCCeEEEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 999999999999842 469999999999999999999999 999999999999999999988753
No 65
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=99.74 E-value=3e-17 Score=163.58 Aligned_cols=121 Identities=23% Similarity=0.469 Sum_probs=110.7
Q ss_pred CcEEEEEecChHHHHHHHHHHhhcCCE--EEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEKVGAT--VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1098 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~~G~~--v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~M 1098 (1177)
..+||||||++..+..++.+|+..|+. |..+.++.+|++.+.. .+||+||+|+.|
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~-----------------------~~~dlii~D~~l 61 (144)
T 3kht_A 5 SKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQ-----------------------AKYDLIILDIGL 61 (144)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTT-----------------------CCCSEEEECTTC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhc-----------------------CCCCEEEEeCCC
Confidence 469999999999999999999999987 8899999999998853 479999999999
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHHhhc
Q 001044 1099 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPI-DSERMVSTILRLTKN 1167 (1177)
Q Consensus 1099 P~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~-~~~~L~~~I~~l~~~ 1167 (1177)
|+++|++++++||+... .+.+|||++|+..+.+...+++++|+++||.||+ +.++|..+|++++++
T Consensus 62 ~~~~g~~~~~~lr~~~~---~~~~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~~ 128 (144)
T 3kht_A 62 PIANGFEVMSAVRKPGA---NQHTPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSY 128 (144)
T ss_dssp GGGCHHHHHHHHHSSST---TTTCCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhccc---ccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHHH
Confidence 99999999999997432 3569999999999999999999999999999999 999999999988754
No 66
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.73 E-value=3e-17 Score=162.85 Aligned_cols=118 Identities=23% Similarity=0.372 Sum_probs=108.8
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1101 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~m 1101 (1177)
.+||||||++..+..++.+|+..||.|..+.++.+|++.+.. ..||+||+|+.||++
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-----------------------~~~dlvllD~~l~~~ 61 (137)
T 3cfy_A 5 PRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIER-----------------------SKPQLIILDLKLPDM 61 (137)
T ss_dssp CEEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHH-----------------------HCCSEEEECSBCSSS
T ss_pred ceEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHh-----------------------cCCCEEEEecCCCCC
Confidence 389999999999999999999999999999999999999864 269999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1167 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~ 1167 (1177)
+|++++++||+.. +++|||++|+....+...+++++|+++||.||++.++|..+|++++++
T Consensus 62 ~g~~l~~~l~~~~-----~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~ 122 (137)
T 3cfy_A 62 SGEDVLDWINQND-----IPTSVIIATAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKR 122 (137)
T ss_dssp BHHHHHHHHHHTT-----CCCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcC-----CCCCEEEEEecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHHHH
Confidence 9999999999752 468999999999999999999999999999999999999999888753
No 67
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.73 E-value=5.4e-17 Score=159.64 Aligned_cols=129 Identities=25% Similarity=0.358 Sum_probs=111.7
Q ss_pred CcEEEEEecChHHHHHHHHHHhhcCC--EEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEKVGA--TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1098 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~~G~--~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~M 1098 (1177)
+.+||||||++..+..+..+|+..|+ .|..+.++.+|++.+..... ......||+||+|+.|
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~----------------~~~~~~~dlvi~d~~~ 65 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGE----------------YANASRPDLILLXLNL 65 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGG----------------GGSCCCCSEEEECSSC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccc----------------cccCCCCcEEEEecCC
Confidence 46899999999999999999999998 99999999999998852000 0001479999999999
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1099 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1099 P~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
|+++|++++++||+... .+++|||++|++...+...+++++|+++||.||++.++|..+|+++++..
T Consensus 66 ~~~~g~~~~~~l~~~~~---~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 132 (140)
T 1k68_A 66 PKKDGREVLAEIKSDPT---LKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEEFW 132 (140)
T ss_dssp SSSCHHHHHHHHHHSTT---GGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHcCcc---cccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHHHH
Confidence 99999999999998532 24699999999999999999999999999999999999999999987644
No 68
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=99.73 E-value=3.8e-17 Score=160.80 Aligned_cols=121 Identities=27% Similarity=0.433 Sum_probs=110.0
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1101 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~m 1101 (1177)
.+||||||++..+..+..+|+..|+.|..+.++.+|++.+.. .+||+||+|+.||++
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~-----------------------~~~dlvl~D~~l~~~ 60 (136)
T 1mvo_A 4 KKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAET-----------------------EKPDLIVLDVMLPKL 60 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------------------HCCSEEEEESSCSSS
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhh-----------------------cCCCEEEEecCCCCC
Confidence 589999999999999999999999999999999999998864 269999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCCC
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPS 1170 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~~~ 1170 (1177)
+|++++++||+.. +.+|||++|++.......+++++|+++||.||++.++|..+|++++++...
T Consensus 61 ~g~~~~~~l~~~~-----~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 124 (136)
T 1mvo_A 61 DGIEVCKQLRQQK-----LMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSEI 124 (136)
T ss_dssp CHHHHHHHHHHTT-----CCCCEEEEECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHTC--
T ss_pred CHHHHHHHHHcCC-----CCCCEEEEECCCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHhhcc
Confidence 9999999999753 358999999999888889999999999999999999999999999876543
No 69
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=99.73 E-value=2.4e-17 Score=161.59 Aligned_cols=122 Identities=18% Similarity=0.284 Sum_probs=105.7
Q ss_pred CcEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1100 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~ 1100 (1177)
..+||||||++..+..++.+|+ .|+.|..+.++.+|++.+.. .+||+||+|+.||+
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~-----------------------~~~dlvi~d~~l~~ 59 (133)
T 3nhm_A 4 KPKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALA-----------------------HPPDVLISDVNMDG 59 (133)
T ss_dssp -CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHH-----------------------SCCSEEEECSSCSS
T ss_pred CCEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhc-----------------------CCCCEEEEeCCCCC
Confidence 3689999999999999999999 89999999999999999864 37999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCCC
Q 001044 1101 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPS 1170 (1177)
Q Consensus 1101 mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~~~ 1170 (1177)
++|++++++||+... .+++|||++|+...... .+++++|+++||.||++.++|..+|.+++++...
T Consensus 60 ~~g~~~~~~l~~~~~---~~~~pii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 125 (133)
T 3nhm_A 60 MDGYALCGHFRSEPT---LKHIPVIFVSGYAPRTE-GPADQPVPDAYLVKPVKPPVLIAQLHALLARAEA 125 (133)
T ss_dssp SCHHHHHHHHHHSTT---TTTCCEEEEESCCC------TTSCCCSEEEESSCCHHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHhCCc---cCCCCEEEEeCCCcHhH-HHHhhcCCceEEeccCCHHHHHHHHHHHHhhhcc
Confidence 999999999998532 25699999999988777 8999999999999999999999999999976543
No 70
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=99.73 E-value=5.1e-17 Score=163.38 Aligned_cols=122 Identities=20% Similarity=0.375 Sum_probs=111.7
Q ss_pred CCcEEEEEecChHHHHHHHHHHhhcC--CEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCC
Q 001044 1020 EGLRILLAEDTPLIQIVACKILEKVG--ATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ 1097 (1177)
Q Consensus 1020 ~g~~ILIVdD~~~~~~~l~~~L~~~G--~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~ 1097 (1177)
..++||||||++..+..+..+|+..| +.|..+.++.+|++.+.. .+||+||+|+.
T Consensus 19 ~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~-----------------------~~~dlii~D~~ 75 (150)
T 4e7p_A 19 SHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEK-----------------------ESVDIAILDVE 75 (150)
T ss_dssp -CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTT-----------------------SCCSEEEECSS
T ss_pred CccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhc-----------------------cCCCEEEEeCC
Confidence 35799999999999999999999887 789999999999998853 47999999999
Q ss_pred CCCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCC
Q 001044 1098 MPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1169 (1177)
Q Consensus 1098 MP~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~~ 1169 (1177)
||+++|++++++||+.. +++|||++|+..+.+...+++++|+++||.||++.++|..+|.+++++..
T Consensus 76 l~~~~g~~~~~~l~~~~-----~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~ 142 (150)
T 4e7p_A 76 MPVKTGLEVLEWIRSEK-----LETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGRK 142 (150)
T ss_dssp CSSSCHHHHHHHHHHTT-----CSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTTCC
T ss_pred CCCCcHHHHHHHHHHhC-----CCCeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcCCE
Confidence 99999999999999752 46999999999999999999999999999999999999999999997653
No 71
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=99.73 E-value=4.5e-17 Score=161.85 Aligned_cols=131 Identities=16% Similarity=0.259 Sum_probs=113.0
Q ss_pred CcEEEEEecChHHHHHHHHHHhhcCC--EEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEKVGA--TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1098 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~~G~--~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~M 1098 (1177)
.++||||||++..+..+..+|+..|+ .|..+.++.+|++.+.... ....+||+||+|+.|
T Consensus 9 ~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~------------------~~~~~~dlvi~D~~l 70 (146)
T 3ilh_A 9 IDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELY------------------AAGRWPSIICIDINM 70 (146)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHH------------------TSSCCCSEEEEESSC
T ss_pred cceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhh------------------ccCCCCCEEEEcCCC
Confidence 46899999999999999999999999 9999999999999987421 012479999999999
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcC-CCEEEECCCCHHHHHHHHHHHhhcCCC
Q 001044 1099 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG-MNAYLTKPIDSERMVSTILRLTKNMPS 1170 (1177)
Q Consensus 1099 P~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG-~d~yL~KP~~~~~L~~~I~~l~~~~~~ 1170 (1177)
|+++|++++++||+.... ...++|||++|+....+...+++++| +++||.||++.++|..+|.++......
T Consensus 71 ~~~~g~~~~~~l~~~~~~-~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~~~~~ 142 (146)
T 3ilh_A 71 PGINGWELIDLFKQHFQP-MKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNEGHH 142 (146)
T ss_dssp SSSCHHHHHHHHHHHCGG-GTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC---
T ss_pred CCCCHHHHHHHHHHhhhh-ccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHHhccC
Confidence 999999999999985311 12569999999999999999999999 999999999999999999999876543
No 72
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=99.73 E-value=2e-17 Score=162.38 Aligned_cols=121 Identities=19% Similarity=0.346 Sum_probs=109.0
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCCEEE-EEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1100 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~~v~-~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~ 1100 (1177)
++||||||++..+..++.+|++.|+.+. .+.++.+|++.+... +||+||+|+.||+
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~-----------------------~~dlii~d~~l~~ 58 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETL-----------------------KPDIVIIDVDIPG 58 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHH-----------------------CCSEEEEETTCSS
T ss_pred eEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhc-----------------------CCCEEEEecCCCC
Confidence 5899999999999999999999999998 899999999998752 6999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCCC
Q 001044 1101 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPS 1170 (1177)
Q Consensus 1101 mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~~~ 1170 (1177)
++|++++++||+.. +++|||++|++.+.+...+++++|+++||.||++.++|..+|++++++...
T Consensus 59 ~~g~~~~~~l~~~~-----~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~ 123 (134)
T 3f6c_A 59 VNGIQVLETLRKRQ-----YSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 123 (134)
T ss_dssp SCHHHHHHHHHHTT-----CCSEEEEEECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTCCB
T ss_pred CChHHHHHHHHhcC-----CCCeEEEEeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCEE
Confidence 99999999999753 468999999999988899999999999999999999999999999977644
No 73
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=99.73 E-value=2.8e-17 Score=162.08 Aligned_cols=120 Identities=23% Similarity=0.311 Sum_probs=111.6
Q ss_pred CcEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1100 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~ 1100 (1177)
.++||||||++..+..++.+|+..|+.|..+.++.+|++.+.. .+||+||+|+.||+
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~-----------------------~~~dlvi~d~~l~~ 63 (137)
T 3hdg_A 7 ALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGL-----------------------HAPDVIITDIRMPK 63 (137)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHH-----------------------HCCSEEEECSSCSS
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhc-----------------------cCCCEEEEeCCCCC
Confidence 4689999999999999999999999999999999999999975 26999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1101 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1101 mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
++|++++++||+.. +++|||++|+....+...+++++|+++||.||++.++|..+|.++.++.
T Consensus 64 ~~g~~~~~~l~~~~-----~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 126 (137)
T 3hdg_A 64 LGGLEMLDRIKAGG-----AKPYVIVISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHIK 126 (137)
T ss_dssp SCHHHHHHHHHHTT-----CCCEEEECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcC-----CCCcEEEEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHHH
Confidence 99999999999753 4689999999999999999999999999999999999999999998654
No 74
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=99.73 E-value=8.5e-17 Score=159.25 Aligned_cols=125 Identities=20% Similarity=0.353 Sum_probs=112.6
Q ss_pred CcEEEEEecChHHHHHHHHHHhh-cCCE-EEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEK-VGAT-VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1098 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~-~G~~-v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~M 1098 (1177)
..+||||||++..+..++.+|+. .|+. |..+.++.+|++.+.. .+||+||+|+.|
T Consensus 8 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~-----------------------~~~dlii~d~~l 64 (143)
T 3cnb_A 8 DFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHT-----------------------VKPDVVMLDLMM 64 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHH-----------------------TCCSEEEEETTC
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHh-----------------------cCCCEEEEeccc
Confidence 46999999999999999999999 9999 9999999999999874 369999999999
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCCCC
Q 001044 1099 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSE 1171 (1177)
Q Consensus 1099 P~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~~~~ 1171 (1177)
|+++|++++++||+... .+++|||++|+....+...+++++|+++||.||++.++|..+|++++++....
T Consensus 65 ~~~~g~~~~~~l~~~~~---~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~~ 134 (143)
T 3cnb_A 65 VGMDGFSICHRIKSTPA---TANIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQKKAT 134 (143)
T ss_dssp TTSCHHHHHHHHHTSTT---TTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTTC--
T ss_pred CCCcHHHHHHHHHhCcc---ccCCcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhccc
Confidence 99999999999997422 25699999999999999999999999999999999999999999999776543
No 75
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=99.73 E-value=4e-17 Score=156.82 Aligned_cols=118 Identities=23% Similarity=0.352 Sum_probs=108.3
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1101 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~m 1101 (1177)
.+||||||++..+..++.+|+..|+.+..+.++.+|+..+.. ..||+||+|+.||+|
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-----------------------~~~dlvi~D~~l~~~ 58 (121)
T 1zh2_A 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAAT-----------------------RKPDLIILDLGLPDG 58 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH-----------------------HCCSEEEEESEETTE
T ss_pred cEEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHhc-----------------------CCCCEEEEeCCCCCC
Confidence 479999999999999999999999999999999999998764 269999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
+|++++++||+. +++|||++|++...+...+++++|+++|+.||++.++|..+|++++++.
T Consensus 59 ~g~~~~~~l~~~------~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 119 (121)
T 1zh2_A 59 DGIEFIRDLRQW------SAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (121)
T ss_dssp EHHHHHHHHHTT------CCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhC------CCCcEEEEECCCCHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHHHHhh
Confidence 999999999942 3589999999999999999999999999999999999999999987653
No 76
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=99.73 E-value=5.1e-18 Score=167.42 Aligned_cols=119 Identities=13% Similarity=0.210 Sum_probs=109.1
Q ss_pred CcEEEEEecChHHHHHHHHHHhhcC-CEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEKVG-ATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1099 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~~G-~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP 1099 (1177)
..+||||||++..+..++.+|+..| |.|..+.++.+|++.+. ..+||+||+|+.||
T Consensus 14 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~-----------------------~~~~dlvi~D~~l~ 70 (135)
T 3snk_A 14 RKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPA-----------------------DTRPGIVILDLGGG 70 (135)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCT-----------------------TCCCSEEEEEEETT
T ss_pred CcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHh-----------------------ccCCCEEEEeCCCC
Confidence 4689999999999999999999999 99999999999998774 35799999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001044 1100 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1167 (1177)
Q Consensus 1100 ~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~ 1167 (1177)
+++|++++++||+.. +++|||++|++.+.+...+++++|+++||.||++.++|..+|.+++++
T Consensus 71 ~~~g~~~~~~l~~~~-----~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 71 DLLGKPGIVEARALW-----ATVPLIAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp GGGGSTTHHHHHGGG-----TTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC--
T ss_pred CchHHHHHHHHHhhC-----CCCcEEEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhcc
Confidence 999999999999864 359999999999999999999999999999999999999999998765
No 77
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=99.73 E-value=8.7e-17 Score=159.79 Aligned_cols=120 Identities=22% Similarity=0.342 Sum_probs=110.4
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1101 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~m 1101 (1177)
.+||||||++..+..++.+|+..|+.|..+.++.+|++.+... ...||+||+|+.||++
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~---------------------~~~~dlvi~d~~l~~~ 62 (143)
T 3jte_A 4 AKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTEN---------------------CNSIDVVITDMKMPKL 62 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHT---------------------TTTCCEEEEESCCSSS
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhC---------------------CCCCCEEEEeCCCCCC
Confidence 5899999999999999999999999999999999999998631 2479999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1167 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~ 1167 (1177)
+|++++++||+.. +++|||++|+..+.+...+++++|+++||.||++.++|..+|.+++++
T Consensus 63 ~g~~~~~~l~~~~-----~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 123 (143)
T 3jte_A 63 SGMDILREIKKIT-----PHMAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINR 123 (143)
T ss_dssp CHHHHHHHHHHHC-----TTCEEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhC-----CCCeEEEEECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHH
Confidence 9999999999752 469999999999999999999999999999999999999999888753
No 78
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.72 E-value=1.1e-17 Score=194.68 Aligned_cols=118 Identities=24% Similarity=0.328 Sum_probs=110.3
Q ss_pred EEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCC
Q 001044 1023 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMD 1102 (1177)
Q Consensus 1023 ~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~md 1102 (1177)
+||||||++.++..++.+|+..||.|..|.||.+|++.+.. ..||+||+|++||+||
T Consensus 2 ~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~-----------------------~~~DlvllDi~mP~~d 58 (368)
T 3dzd_A 2 RVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKE-----------------------LFFPVIVLDVWMPDGD 58 (368)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------------------BCCSEEEEESEETTEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh-----------------------CCCCEEEEeCCCCCCC
Confidence 79999999999999999999999999999999999999964 3799999999999999
Q ss_pred HHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1103 GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1103 G~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
|++++++||+.. +++|||++|++.+.+...+|+++||++||.||++.++|..+|.++++..
T Consensus 59 G~ell~~lr~~~-----~~~pvI~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~ 119 (368)
T 3dzd_A 59 GVNFIDFIKENS-----PDSVVIVITGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEEY 119 (368)
T ss_dssp TTTHHHHHHHHC-----TTCEEEEEECSSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-----CCCeEEEEeCCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHh
Confidence 999999999763 4689999999999999999999999999999999999999999988643
No 79
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=99.72 E-value=1.8e-17 Score=164.63 Aligned_cols=119 Identities=29% Similarity=0.394 Sum_probs=108.5
Q ss_pred CcEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1100 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~ 1100 (1177)
+.+||||||++..+..++.+|+..|+.|..+.++.+|++.+.. ...||+||+|+.||.
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~----------------------~~~~dlvi~D~~l~~ 62 (140)
T 3h5i_A 5 DKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSG----------------------GWYPDLILMDIELGE 62 (140)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHT----------------------TCCCSEEEEESSCSS
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhc----------------------CCCCCEEEEeccCCC
Confidence 4699999999999999999999999999999999999998863 247999999999995
Q ss_pred -CCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001044 1101 -MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1167 (1177)
Q Consensus 1101 -mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~ 1167 (1177)
++|++++++||+. +++|||++|++.+.+...+++++|+++||.||++.++|..+|.+++++
T Consensus 63 ~~~g~~~~~~l~~~------~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~ 124 (140)
T 3h5i_A 63 GMDGVQTALAIQQI------SELPVVFLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRL 124 (140)
T ss_dssp SCCHHHHHHHHHHH------CCCCEEEEESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhC------CCCCEEEEECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 9999999999974 358999999999888888999999999999999999999999988754
No 80
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.72 E-value=4.8e-17 Score=158.65 Aligned_cols=122 Identities=20% Similarity=0.290 Sum_probs=98.9
Q ss_pred cHHHHHHHHHHHHHHHHhcCCcEEEEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhccCCCeEEEEeeccccCCCCCCCc
Q 001044 570 DLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAE 649 (1177)
Q Consensus 570 dL~~li~~vv~~~~~~a~~k~I~l~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~~~~~ 649 (1177)
+|.+.+++++..+ ..+++.+.++++...+.....++..|.+++.||++||+||++.|.|.|.+...
T Consensus 2 ~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~~~i~i~~~~~---------- 67 (124)
T 3zxq_A 2 GLRHRLDKVIDQL----AIPALHTTVQYTGPLSVVDTVLANHAEAVLREAVSNAVRHANATSLAINVSVE---------- 67 (124)
T ss_dssp CHHHHHHHHHHHH----TTTTSEEEEEEESCGGGCCHHHHHHHHHHHHHHHHHHHTCTTCCEEEEEEEEE----------
T ss_pred cHHHHHHHHHHHH----HhcCceEEEEeeCccccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEeC----------
Confidence 5677777777766 56677777766554443334468899999999999999999988877764311
Q ss_pred CCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHHHHHH
Q 001044 650 FPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRT 729 (1177)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~ 729 (1177)
.. +.|+|+|+|+||+++. +||||++|++
T Consensus 68 ------------------------------~~-~~i~v~D~G~gi~~~~---------------------~GlGL~~~~~ 95 (124)
T 3zxq_A 68 ------------------------------DD-VRVEVVDDGVGISGDI---------------------TESGLRNLRQ 95 (124)
T ss_dssp ------------------------------EE-EEEEEEECCCSSCGGG---------------------SHHHHHHHHH
T ss_pred ------------------------------CC-EEEEEEECCCCCCccc---------------------cccCHHHHHH
Confidence 23 7799999999999876 3999999999
Q ss_pred HHHHcCCEEEEEEeCCCceEEEEEEecC
Q 001044 730 LVNKMGGEIKVVKKNSPGTLMQLYLLLG 757 (1177)
Q Consensus 730 IVe~~GG~I~v~S~~g~GT~f~~~Lpl~ 757 (1177)
+++.|||++.+++.+++||+|+++||+.
T Consensus 96 ~~~~~gG~i~~~~~~~~G~~~~i~lP~~ 123 (124)
T 3zxq_A 96 RADDAGGEFTVENMPTGGTLLRWSAPLR 123 (124)
T ss_dssp HHHHHTCEEEEEECTTSSEEEEEEEECC
T ss_pred HHHHhCCEEEEEEcCCCcEEEEEEEecC
Confidence 9999999999999999999999999974
No 81
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=99.72 E-value=1.4e-17 Score=161.75 Aligned_cols=122 Identities=31% Similarity=0.474 Sum_probs=110.5
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1101 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~m 1101 (1177)
.+||||||++..+..++.+|+..|+.+..+.++.+|++.+. ..+||+||+|+.||++
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~-----------------------~~~~dlvi~D~~l~~~ 59 (127)
T 2jba_A 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLN-----------------------EPWPDLILLAWMLPGG 59 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCS-----------------------SSCCSEEEEESEETTE
T ss_pred cEEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHh-----------------------ccCCCEEEEecCCCCC
Confidence 48999999999999999999999999999999999998763 2469999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCC
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1169 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~~ 1169 (1177)
+|++++++||+... .+++|||++|++...+...+++++|+++||.||++.++|..+|++++++..
T Consensus 60 ~g~~~~~~l~~~~~---~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~~ 124 (127)
T 2jba_A 60 SGIQFIKHLRRESM---TRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRRIS 124 (127)
T ss_dssp EHHHHHHHHHTSTT---TTTSCEEEEEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHHCCC
T ss_pred CHHHHHHHHHhCcc---cCCCCEEEEeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhccc
Confidence 99999999997532 246999999999988888999999999999999999999999999987653
No 82
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=99.72 E-value=8.8e-17 Score=161.85 Aligned_cols=124 Identities=26% Similarity=0.381 Sum_probs=111.1
Q ss_pred cCCcEEEEEecChHHHHHHHHHHhhcCCE--EEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeC
Q 001044 1019 LEGLRILLAEDTPLIQIVACKILEKVGAT--VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDC 1096 (1177)
Q Consensus 1019 ~~g~~ILIVdD~~~~~~~l~~~L~~~G~~--v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi 1096 (1177)
..+.+||||||++..+..++.+|+..|+. +..+.++.+|++.+... +||+||+|+
T Consensus 13 ~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~-----------------------~~dlii~d~ 69 (152)
T 3eul_A 13 PEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAH-----------------------LPDVALLDY 69 (152)
T ss_dssp -CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHH-----------------------CCSEEEEET
T ss_pred CceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhc-----------------------CCCEEEEeC
Confidence 35679999999999999999999999854 55899999999999752 699999999
Q ss_pred CCCCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCCC
Q 001044 1097 QMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPS 1170 (1177)
Q Consensus 1097 ~MP~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~~~ 1170 (1177)
.||+++|++++++||+.. +.+|||++|+..+.+...+++++|+++||.||++.++|..+|.+++++...
T Consensus 70 ~l~~~~g~~~~~~l~~~~-----~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~~ 138 (152)
T 3eul_A 70 RMPGMDGAQVAAAVRSYE-----LPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRDV 138 (152)
T ss_dssp TCSSSCHHHHHHHHHHTT-----CSCEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC--
T ss_pred CCCCCCHHHHHHHHHhcC-----CCCeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCCee
Confidence 999999999999999753 468999999999999999999999999999999999999999999977643
No 83
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=99.72 E-value=8.5e-17 Score=157.40 Aligned_cols=122 Identities=21% Similarity=0.371 Sum_probs=105.6
Q ss_pred CcEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1100 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~ 1100 (1177)
+.+||||||++..+..++.+|++.|+.|..+.++.+|++.+.. .+||+||+|+.||+
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-----------------------~~~dlii~d~~l~~ 62 (132)
T 3lte_A 6 SKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLST-----------------------FEPAIMTLDLSMPK 62 (132)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------------------TCCSEEEEESCBTT
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHh-----------------------cCCCEEEEecCCCC
Confidence 4699999999999999999999999999999999999999864 37999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCC
Q 001044 1101 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1169 (1177)
Q Consensus 1101 mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~~ 1169 (1177)
++|++++++||+... ...+|||++|+.... ...+++++|+++||.||++.++|..+|.+......
T Consensus 63 ~~g~~~~~~l~~~~~---~~~~~ii~~~~~~~~-~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 127 (132)
T 3lte_A 63 LDGLDVIRSLRQNKV---ANQPKILVVSGLDKA-KLQQAVTEGADDYLEKPFDNDALLDRIHDLVNEGH 127 (132)
T ss_dssp BCHHHHHHHHHTTTC---SSCCEEEEECCSCSH-HHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHhcCc---cCCCeEEEEeCCChH-HHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCCCC
Confidence 999999999997532 134677777766655 78899999999999999999999999999887653
No 84
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=99.72 E-value=5.4e-17 Score=162.06 Aligned_cols=123 Identities=23% Similarity=0.412 Sum_probs=111.9
Q ss_pred CCcEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001044 1020 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1099 (1177)
Q Consensus 1020 ~g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP 1099 (1177)
.+.+||||||++..+..+..+|+..||.|..+.++.+|++.+... .||+||+|+.||
T Consensus 7 ~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-----------------------~~dlii~d~~l~ 63 (147)
T 2zay_A 7 KWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKT-----------------------HPHLIITEANMP 63 (147)
T ss_dssp -CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHH-----------------------CCSEEEEESCCS
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcC-----------------------CCCEEEEcCCCC
Confidence 357999999999999999999999999999999999999998752 699999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1100 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1100 ~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
+++|++++++||+... .+++|||++|+....+...+++++|+++||.||++.++|..+|.+++++.
T Consensus 64 ~~~g~~~~~~l~~~~~---~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~ 129 (147)
T 2zay_A 64 KISGMDLFNSLKKNPQ---TASIPVIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKLL 129 (147)
T ss_dssp SSCHHHHHHHHHTSTT---TTTSCEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCcc---cCCCCEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 9999999999997322 35699999999999999999999999999999999999999999988654
No 85
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.71 E-value=9.1e-17 Score=159.96 Aligned_cols=131 Identities=26% Similarity=0.408 Sum_probs=112.1
Q ss_pred CCcEEEEEecChHHHHHHHHHHhhcCC--EEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCC--CCccEEEEe
Q 001044 1020 EGLRILLAEDTPLIQIVACKILEKVGA--TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDT--PRFDLILMD 1095 (1177)
Q Consensus 1020 ~g~~ILIVdD~~~~~~~l~~~L~~~G~--~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~DLIlmD 1095 (1177)
.+.+||||||++..+..++.+|+..|+ .|..+.++.+|++.+.... ...... ..||+||+|
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~---------------~~~~~~~~~~~dlvi~D 69 (149)
T 1k66_A 5 ATQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTG---------------SYCNPDIAPRPAVILLD 69 (149)
T ss_dssp TTSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCC---------------SSSCGGGCCCCSEEEEC
T ss_pred CCccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcc---------------cccCcccCCCCcEEEEE
Confidence 346899999999999999999999998 8999999999999986310 000000 479999999
Q ss_pred CCCCCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1096 CQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1096 i~MP~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
+.||+++|++++++||+... .+++|||++|++...+...+++++|+++||.||++.++|..+|.++++..
T Consensus 70 ~~l~~~~g~~~~~~l~~~~~---~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 139 (149)
T 1k66_A 70 LNLPGTDGREVLQEIKQDEV---LKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKYW 139 (149)
T ss_dssp SCCSSSCHHHHHHHHTTSTT---GGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHhCcc---cCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999998532 24699999999999999999999999999999999999999999887543
No 86
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=99.71 E-value=5.3e-17 Score=178.68 Aligned_cols=121 Identities=26% Similarity=0.421 Sum_probs=111.7
Q ss_pred CCcEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001044 1020 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1099 (1177)
Q Consensus 1020 ~g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP 1099 (1177)
...+||||||++..+..++.+|+..|+.|..+.++.+|++.+.. .+||+||+|+.||
T Consensus 36 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-----------------------~~~DlvllD~~lp 92 (249)
T 3q9s_A 36 NEQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKARE-----------------------DHPDLILLDLGLP 92 (249)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH-----------------------SCCSEEEEECCSC
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc-----------------------CCCCEEEEcCCCC
Confidence 34799999999999999999999999999999999999999864 3699999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCC
Q 001044 1100 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1169 (1177)
Q Consensus 1100 ~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~~ 1169 (1177)
+|||++++++||+. +.+|||++|++.+.+...+|+++|+++||.||++.++|..+|+.++++..
T Consensus 93 ~~~G~~l~~~lr~~------~~~~iI~lt~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~~~ 156 (249)
T 3q9s_A 93 DFDGGDVVQRLRKN------SALPIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQRT 156 (249)
T ss_dssp HHHHHHHHHHHHTT------CCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCCCC
T ss_pred CCCHHHHHHHHHcC------CCCCEEEEECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhhcc
Confidence 99999999999962 35899999999999999999999999999999999999999999987653
No 87
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=99.71 E-value=6e-17 Score=154.81 Aligned_cols=114 Identities=25% Similarity=0.430 Sum_probs=103.2
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1101 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~m 1101 (1177)
.+||||||++..+..++.+|+..|+.|..+.++.+|++.+.. .+||+||+|+.||++
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~-----------------------~~~dlvl~D~~l~~~ 58 (116)
T 3a10_A 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFS-----------------------GNYDLVILDIEMPGI 58 (116)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------------------SCCSEEEECSCCSSS
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc-----------------------CCCCEEEEECCCCCC
Confidence 379999999999999999999999999999999999998864 369999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHh
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLT 1165 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~ 1165 (1177)
+|++++++||+.. +++|||++|++.... .+++++|+++||.||++.++|..+|++++
T Consensus 59 ~g~~~~~~l~~~~-----~~~~ii~~s~~~~~~--~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 59 SGLEVAGEIRKKK-----KDAKIILLTAYSHYR--SDMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp CHHHHHHHHHHHC-----TTCCEEEEESCGGGG--GCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred CHHHHHHHHHccC-----CCCeEEEEECCcchH--HHHHhccccceEECCCCHHHHHHHHHHHh
Confidence 9999999999753 358999999986654 67889999999999999999999998765
No 88
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.71 E-value=1.5e-16 Score=170.03 Aligned_cols=119 Identities=25% Similarity=0.392 Sum_probs=109.2
Q ss_pred cEEEEEecChHHHHHHHHHHhhcC-CEE-EEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVG-ATV-SVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1099 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G-~~v-~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP 1099 (1177)
.+||||||++..+..+..+|+..| +.+ ..+.++.+|++.+.. .+||+||+|+.||
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~~-----------------------~~~dlvllD~~lp 62 (215)
T 1a04_A 6 ATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAES-----------------------LDPDLILLDLNMP 62 (215)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHH-----------------------HCCSEEEEETTST
T ss_pred eEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHh-----------------------cCCCEEEEeCCCC
Confidence 689999999999999999999874 887 689999999998864 2699999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1100 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1100 ~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
+|||++++++||+.. +++|||++|++...+...+++++|+++||.||++.++|..+|++++++.
T Consensus 63 ~~~g~~~~~~lr~~~-----~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 126 (215)
T 1a04_A 63 GMNGLETLDKLREKS-----LSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGE 126 (215)
T ss_dssp TSCHHHHHHHHHHSC-----CCSEEEEEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHSC
T ss_pred CCcHHHHHHHHHHhC-----CCCcEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHcCC
Confidence 999999999999752 4589999999999999999999999999999999999999999998764
No 89
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.70 E-value=5.1e-17 Score=172.57 Aligned_cols=119 Identities=19% Similarity=0.291 Sum_probs=108.9
Q ss_pred CcEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1100 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~ 1100 (1177)
+.+||||||++..+..+..+|+..||.|..+.++.+|++.+. ..+||+||+|+.||+
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-----------------------~~~~dlvl~D~~lp~ 60 (208)
T 1yio_A 4 KPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRR-----------------------PEQHGCLVLDMRMPG 60 (208)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCC-----------------------TTSCEEEEEESCCSS
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhh-----------------------ccCCCEEEEeCCCCC
Confidence 358999999999999999999999999999999999999874 247999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001044 1101 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1167 (1177)
Q Consensus 1101 mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~ 1167 (1177)
|||++++++||+.. +++|||++|++.+.+...+++++|+++||.||++.++|..+|.+++++
T Consensus 61 ~~g~~~~~~l~~~~-----~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 122 (208)
T 1yio_A 61 MSGIELQEQLTAIS-----DGIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQL 122 (208)
T ss_dssp SCHHHHHHHHHHTT-----CCCCEEEEESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcC-----CCCCEEEEeCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHhh
Confidence 99999999999753 469999999999988889999999999999999999999999887754
No 90
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=99.70 E-value=1.6e-16 Score=159.95 Aligned_cols=119 Identities=23% Similarity=0.302 Sum_probs=108.5
Q ss_pred CcEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1100 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~ 1100 (1177)
..+||||||++..+..+..+|+. |+.|..+.++.+|++.+.. ..+||+||+|+.||+
T Consensus 4 ~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~----------------------~~~~dlvi~D~~l~~ 60 (151)
T 3kcn_A 4 NERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKK----------------------SDPFSVIMVDMRMPG 60 (151)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHH----------------------SCCCSEEEEESCCSS
T ss_pred CCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHc----------------------CCCCCEEEEeCCCCC
Confidence 46899999999999999999986 9999999999999999964 235799999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcC-CCEEEECCCCHHHHHHHHHHHhhc
Q 001044 1101 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG-MNAYLTKPIDSERMVSTILRLTKN 1167 (1177)
Q Consensus 1101 mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG-~d~yL~KP~~~~~L~~~I~~l~~~ 1167 (1177)
++|++++++||+.. +.+|||++|+..+.+...+++++| +++||.||++.++|..+|.+++++
T Consensus 61 ~~g~~~~~~l~~~~-----~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~~ 123 (151)
T 3kcn_A 61 MEGTEVIQKARLIS-----PNSVYLMLTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQ 123 (151)
T ss_dssp SCHHHHHHHHHHHC-----SSCEEEEEECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHhcC-----CCcEEEEEECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHHH
Confidence 99999999999753 468999999999999999999999 999999999999999999887754
No 91
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=99.70 E-value=1.8e-16 Score=157.33 Aligned_cols=122 Identities=16% Similarity=0.271 Sum_probs=109.9
Q ss_pred CcEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1100 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~ 1100 (1177)
..+||||||++..+..++.+|+..||+|..+.++.+|++.+.. ..||+||+|+ ||+
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-----------------------~~~dlvi~d~-~~~ 59 (142)
T 2qxy_A 4 TPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRR-----------------------EKIDLVFVDV-FEG 59 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTT-----------------------SCCSEEEEEC-TTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhc-----------------------cCCCEEEEeC-CCC
Confidence 3689999999999999999999999999999999999998853 4799999999 999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCCCC
Q 001044 1101 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSE 1171 (1177)
Q Consensus 1101 mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~~~~ 1171 (1177)
++|++++++||+.. +++|||++|+....+...+++++|+++||.||++.++|..+|.+++++....
T Consensus 60 ~~g~~~~~~l~~~~-----~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~~ 125 (142)
T 2qxy_A 60 EESLNLIRRIREEF-----PDTKVAVLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISSTPRV 125 (142)
T ss_dssp HHHHHHHHHHHHHC-----TTCEEEEEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC----
T ss_pred CcHHHHHHHHHHHC-----CCCCEEEEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhcccc
Confidence 99999999999752 4699999999999999999999999999999999999999999998765443
No 92
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=99.70 E-value=6.3e-17 Score=160.39 Aligned_cols=119 Identities=19% Similarity=0.334 Sum_probs=99.6
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1101 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~m 1101 (1177)
.+||||||++..+..++.+|+.. +.|..+.++.+|++.+.. .+||+||+|+.||++
T Consensus 4 ~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~-----------------------~~~dlvi~D~~l~~~ 59 (140)
T 3n53_A 4 KKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDH-----------------------HHPDLVILDMDIIGE 59 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHH-----------------------HCCSEEEEETTC---
T ss_pred CEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhc-----------------------CCCCEEEEeCCCCCC
Confidence 58999999999999999999988 999999999999999975 269999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1167 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~ 1167 (1177)
+|++++++||+... .+++|||++|+....+...+++++|+++||.||++.++|..+|.+++++
T Consensus 60 ~g~~~~~~l~~~~~---~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 122 (140)
T 3n53_A 60 NSPNLCLKLKRSKG---LKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRT 122 (140)
T ss_dssp ---CHHHHHHTSTT---CTTCCEEEEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHcCcc---cCCCCEEEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhh
Confidence 99999999998542 2569999999999888888999999999999999999999999988754
No 93
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.69 E-value=1.5e-16 Score=190.23 Aligned_cols=119 Identities=31% Similarity=0.429 Sum_probs=109.5
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1101 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~m 1101 (1177)
.+||||||++.++..+..+|+..|+.|..+.||.+|++.+.. .+||+||+|+.||+|
T Consensus 2 ~~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~~~-----------------------~~~dlvllD~~mp~~ 58 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAAR-----------------------DLPDIILLDVMMPGM 58 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------------------HCCSEEEEESCCSSS
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc-----------------------CCCCEEEEcCCCCCC
Confidence 489999999999999999999999999999999999999864 269999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1166 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~ 1166 (1177)
||+|++++||+... .+++|||++|++.+.+...+|+++|+++||.||++.++|..+|+++++
T Consensus 59 ~G~~~~~~l~~~~~---~~~~pii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~~~ 120 (459)
T 1w25_A 59 DGFTVCRKLKDDPT---TRHIPVVLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTR 120 (459)
T ss_dssp CHHHHHHHHHHSTT---TTTSCEEEEECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCcc---cCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 99999999997532 256999999999999999999999999999999999999999988764
No 94
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=99.69 E-value=3.3e-16 Score=154.59 Aligned_cols=120 Identities=24% Similarity=0.327 Sum_probs=110.2
Q ss_pred CCcEEEEEecChHHHHHHHHHHhhcCCEEE-EEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001044 1020 EGLRILLAEDTPLIQIVACKILEKVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1098 (1177)
Q Consensus 1020 ~g~~ILIVdD~~~~~~~l~~~L~~~G~~v~-~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~M 1098 (1177)
...+||||||++..+..+..+|+..|+.+. .+.++.+|++.+... +||+||+|+.|
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~-----------------------~~dlii~d~~~ 64 (140)
T 3cg0_A 8 DLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDL-----------------------RPDIALVDIML 64 (140)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHH-----------------------CCSEEEEESSC
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHhC-----------------------CCCEEEEecCC
Confidence 357999999999999999999999999999 599999999998752 69999999999
Q ss_pred C-CCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1099 P-KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1099 P-~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
| +++|++++++||+. +++|||++|+....+...+++++|+++||.||++.++|..+|++++++.
T Consensus 65 ~~~~~g~~~~~~l~~~------~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 129 (140)
T 3cg0_A 65 CGALDGVETAARLAAG------CNLPIIFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHKK 129 (140)
T ss_dssp CSSSCHHHHHHHHHHH------SCCCEEEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhC------CCCCEEEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhcc
Confidence 9 89999999999975 2589999999999999999999999999999999999999999988644
No 95
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=99.69 E-value=3.8e-16 Score=157.52 Aligned_cols=119 Identities=21% Similarity=0.354 Sum_probs=109.4
Q ss_pred CCcEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001044 1020 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1099 (1177)
Q Consensus 1020 ~g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP 1099 (1177)
.+.+||||||++..+..+..+|+..|+.|..+.++.+|++.+.. .+||+||+|+.||
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-----------------------~~~dlvi~d~~l~ 62 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKG-----------------------TSVQLVISDMRMP 62 (154)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTT-----------------------SCCSEEEEESSCS
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhc-----------------------CCCCEEEEecCCC
Confidence 45799999999999999999999999999999999999998853 4699999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcC-CCEEEECCCCHHHHHHHHHHHhh
Q 001044 1100 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG-MNAYLTKPIDSERMVSTILRLTK 1166 (1177)
Q Consensus 1100 ~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG-~d~yL~KP~~~~~L~~~I~~l~~ 1166 (1177)
+++|++++++||+.. +.+|||++|+....+...+++++| +++||.||++.++|..+|.++++
T Consensus 63 ~~~g~~~~~~l~~~~-----~~~~ii~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~ 125 (154)
T 2rjn_A 63 EMGGEVFLEQVAKSY-----PDIERVVISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQ 125 (154)
T ss_dssp SSCHHHHHHHHHHHC-----TTSEEEEEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC-----CCCcEEEEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHH
Confidence 999999999999753 469999999999988999999998 99999999999999999988764
No 96
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=99.69 E-value=1.8e-16 Score=170.37 Aligned_cols=119 Identities=29% Similarity=0.428 Sum_probs=110.5
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1101 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~m 1101 (1177)
++||||||++..+..+..+|+..|+.|..+.++.+|++.+.. .+||+||+|+.||+|
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~-----------------------~~~dlvllD~~l~~~ 59 (225)
T 1kgs_A 3 VRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALN-----------------------EPFDVVILDIMLPVH 59 (225)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------------------SCCSEEEEESCCSSS
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-----------------------CCCCEEEEeCCCCCC
Confidence 589999999999999999999999999999999999998864 369999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
+|++++++||+.. +++|||++|++...+...+++++|+++||.||++.++|..+|+.++++.
T Consensus 60 ~g~~~~~~lr~~~-----~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 121 (225)
T 1kgs_A 60 DGWEILKSMRESG-----VNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRK 121 (225)
T ss_dssp CHHHHHHHHHHTT-----CCCCEEEEESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcC-----CCCCEEEEeCCCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHhhc
Confidence 9999999999752 4699999999999889999999999999999999999999999998654
No 97
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=99.69 E-value=1.4e-16 Score=168.99 Aligned_cols=117 Identities=32% Similarity=0.478 Sum_probs=107.5
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCCEEE-EEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1100 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~~v~-~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~ 1100 (1177)
.+||||||++..+..+..+|+..||.|. .+.+|.+|++.+.. .+||+||+|+.||+
T Consensus 14 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~-----------------------~~~dlvi~D~~~p~ 70 (205)
T 1s8n_A 14 RRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAEL-----------------------HKPDLVIMDVKMPR 70 (205)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-----------------------HCCSEEEEESSCSS
T ss_pred ccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhh-----------------------cCCCEEEEeCCCCC
Confidence 5899999999999999999999999998 89999999999864 26999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001044 1101 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1167 (1177)
Q Consensus 1101 mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~ 1167 (1177)
|||++++++||+.. ..|||++|++...+...+++++|+++||.||++.++|..+|.+++++
T Consensus 71 ~~g~~~~~~l~~~~------~~pii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~ 131 (205)
T 1s8n_A 71 RDGIDAASEIASKR------IAPIVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSR 131 (205)
T ss_dssp SCHHHHHHHHHHTT------CSCEEEEEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHhcC------CCCEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 99999999999742 25999999999999999999999999999999999999999887653
No 98
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=99.69 E-value=8.2e-17 Score=159.58 Aligned_cols=122 Identities=24% Similarity=0.353 Sum_probs=110.6
Q ss_pred CCcEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001044 1020 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1099 (1177)
Q Consensus 1020 ~g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP 1099 (1177)
...+||||||++..+..+..+|+..|++|..+.++.+|++.+.. .+||+||+|+.||
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-----------------------~~~dlii~d~~l~ 62 (142)
T 3cg4_A 6 HKGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKK-----------------------GFSGVVLLDIMMP 62 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHT-----------------------CCCEEEEEESCCS
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHh-----------------------cCCCEEEEeCCCC
Confidence 35799999999999999999999999999999999999999863 4699999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001044 1100 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1167 (1177)
Q Consensus 1100 ~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~ 1167 (1177)
+++|++++++||+... .+++|||++|+....+...+++++|+++||.||++.++|..+|+++++.
T Consensus 63 ~~~g~~~~~~l~~~~~---~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 127 (142)
T 3cg4_A 63 GMDGWDTIRAILDNSL---EQGIAIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMGF 127 (142)
T ss_dssp SSCHHHHHHHHHHTTC---CTTEEEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhcc---cCCCCEEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHHH
Confidence 9999999999998422 2569999999998888888999999999999999999999999988754
No 99
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=99.69 E-value=5.8e-17 Score=190.21 Aligned_cols=118 Identities=25% Similarity=0.457 Sum_probs=105.3
Q ss_pred CcEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1100 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~ 1100 (1177)
..+||||||++.++..++.+|++.||+|..+.||++|++.+.. .+||+||+|++||+
T Consensus 5 ~~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~-----------------------~~~dlvllD~~mp~ 61 (394)
T 3eq2_A 5 SATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFES-----------------------EQPDLVICDLRMPQ 61 (394)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHHH-----------------------SCCSEEEECCCSSS
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhh-----------------------CCCCEEEEcCCCCC
Confidence 3689999999999999999999999999999999999999864 36999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHHhh
Q 001044 1101 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPI-DSERMVSTILRLTK 1166 (1177)
Q Consensus 1101 mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~-~~~~L~~~I~~l~~ 1166 (1177)
|||+|++++||+.. +++|||++|++.+.+...+|+++|+++||.||+ +.++|..+|.++++
T Consensus 62 ~~G~~~~~~lr~~~-----~~~pii~lt~~~~~~~~~~a~~~ga~~yl~KP~~~~~~l~~~i~~~~~ 123 (394)
T 3eq2_A 62 IDGLELIRRIRQTA-----SETPIIVLSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRALD 123 (394)
T ss_dssp SCTHHHHHHHHHTT-----CCCCEEEC---CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhC-----CCCcEEEEEcCCCHHHHHHHHhcChhhEEECCCChHHHHHHHHHHHHh
Confidence 99999999999752 469999999999999999999999999999999 68888888877764
No 100
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=99.68 E-value=4.1e-16 Score=153.89 Aligned_cols=122 Identities=18% Similarity=0.266 Sum_probs=110.5
Q ss_pred CcEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC-
Q 001044 1021 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP- 1099 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP- 1099 (1177)
..+||||||++..+..++.+|+..|+.|..+.++.+|++.+.. .+||+||+|+.||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-----------------------~~~dlvi~d~~~~~ 59 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLRE-----------------------ENPEVVLLDMNFTS 59 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHH-----------------------SCEEEEEEETTTTC
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHc-----------------------CCCCEEEEeCCcCC
Confidence 3689999999999999999999999999999999999999864 3699999999999
Q ss_pred ----CCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCCC
Q 001044 1100 ----KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPS 1170 (1177)
Q Consensus 1100 ----~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~~~ 1170 (1177)
+++|++++++||+.. +++|||++|+....+...+++++|+++||.||++.++|..+|.+++++...
T Consensus 60 ~~~~~~~g~~~~~~l~~~~-----~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~ 129 (140)
T 2qr3_A 60 GINNGNEGLFWLHEIKRQY-----RDLPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQAKD 129 (140)
T ss_dssp -----CCHHHHHHHHHHHC-----TTCCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC--
T ss_pred CCCCCccHHHHHHHHHhhC-----cCCCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHhccc
Confidence 999999999999752 469999999999998999999999999999999999999999999876543
No 101
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=99.68 E-value=1.2e-16 Score=159.28 Aligned_cols=117 Identities=21% Similarity=0.322 Sum_probs=99.6
Q ss_pred cEEEEEecChHHHHHHHHHHh--hcCCEEE-EEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILE--KVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1098 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~--~~G~~v~-~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~M 1098 (1177)
.+||||||++..+..+..+|+ ..|+.+. .+.++.+|++.+.. .+||+||+|+.|
T Consensus 3 ~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~~-----------------------~~~dlvllD~~l 59 (141)
T 3cu5_A 3 LRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALK-----------------------HPPNVLLTDVRM 59 (141)
T ss_dssp CEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHTT-----------------------SCCSEEEEESCC
T ss_pred ceEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHhc-----------------------CCCCEEEEeCCC
Confidence 489999999999999999997 3688877 89999999998842 469999999999
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001044 1099 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1166 (1177)
Q Consensus 1099 P~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~ 1166 (1177)
|+|+|++++++||+.. +.+|||++|+....+...+++++|+++||.||++.++|..+|+++++
T Consensus 60 p~~~g~~l~~~l~~~~-----~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 122 (141)
T 3cu5_A 60 PRMDGIELVDNILKLY-----PDCSVIFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQ 122 (141)
T ss_dssp SSSCHHHHHHHHHHHC-----TTCEEEEECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhhC-----CCCcEEEEeCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHH
Confidence 9999999999999742 46899999999988888899999999999999999999999988764
No 102
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=99.68 E-value=1.5e-16 Score=157.84 Aligned_cols=121 Identities=38% Similarity=0.666 Sum_probs=104.0
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1101 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~m 1101 (1177)
.+||||||++..+..+..+|+..|+.+..+.++.+|++.+.. .+||+||+|+.||++
T Consensus 11 ~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~-----------------------~~~dlvllD~~lp~~ 67 (140)
T 3c97_A 11 LSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQN-----------------------RQFDVIIMDIQMPVM 67 (140)
T ss_dssp CEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHH-----------------------SCCSEEEECTTCCSS
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHhc-----------------------CCCCEEEEeCCCCCC
Confidence 589999999999999999999999999999999999998864 369999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
||++++++||+.......+.+|||++|+........ ++|+++||.||++.++|..+|.+++++.
T Consensus 68 ~g~~~~~~l~~~~~~~~~~~~~ii~~s~~~~~~~~~---~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 131 (140)
T 3c97_A 68 DGLEAVSEIRNYERTHNTKRASIIAITADTIDDDRP---GAELDEYVSKPLNPNQLRDVVLTCHSEG 131 (140)
T ss_dssp CHHHHHHHHHHHHHHHTCCCCCCEEEESSCCSCCCC---CSSCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred cHHHHHHHHHhhhhhcCCCceEEEEEeCccchhHHH---hCChhheEeCCCCHHHHHHHHHHHhCCC
Confidence 999999999975321122468999999976654433 7899999999999999999999998654
No 103
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=99.68 E-value=4.8e-16 Score=156.60 Aligned_cols=121 Identities=26% Similarity=0.377 Sum_probs=111.0
Q ss_pred CCcEEEEEecChHHHHHHHHHHhh-cCCEEE-EEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCC
Q 001044 1020 EGLRILLAEDTPLIQIVACKILEK-VGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ 1097 (1177)
Q Consensus 1020 ~g~~ILIVdD~~~~~~~l~~~L~~-~G~~v~-~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~ 1097 (1177)
...+||||||++..+..++.+|+. .|+.+. .+.++.+|++.+.. ..||+||+|+.
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~-----------------------~~~dlii~D~~ 60 (153)
T 3cz5_A 4 STARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRE-----------------------TTPDIVVMDLT 60 (153)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHT-----------------------TCCSEEEECSC
T ss_pred cccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhc-----------------------CCCCEEEEecC
Confidence 346999999999999999999998 799998 89999999998863 36999999999
Q ss_pred CCCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1098 MPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1098 MP~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
||+++|++++++||+.. +.+|||++|+....+...+++++|+++||.||++.++|..+|.+++++.
T Consensus 61 l~~~~g~~~~~~l~~~~-----~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~ 126 (153)
T 3cz5_A 61 LPGPGGIEATRHIRQWD-----GAARILIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGR 126 (153)
T ss_dssp CSSSCHHHHHHHHHHHC-----TTCCEEEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTC
T ss_pred CCCCCHHHHHHHHHHhC-----CCCeEEEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhCC
Confidence 99999999999999863 4589999999999999999999999999999999999999999988765
No 104
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=99.68 E-value=4.5e-16 Score=154.18 Aligned_cols=117 Identities=22% Similarity=0.277 Sum_probs=104.8
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1101 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~m 1101 (1177)
.+||||||++..+..+..+|+.. +.|..+.++.+|++.+.. ..||+||+|+.||+|
T Consensus 2 ~~Ilivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~-----------------------~~~dlvl~D~~lp~~ 57 (139)
T 2jk1_A 2 PAILLVDDEPHSLAAMKLALEDD-FDVLTAQGAEAAIAILEE-----------------------EWVQVIICDQRMPGR 57 (139)
T ss_dssp CEEEEECSSHHHHHHHHHHHTTT-SCEEEESSHHHHHHHHHH-----------------------SCEEEEEEESCCSSS
T ss_pred CeEEEEcCCHHHHHHHHHHhhcC-ceEEEcCCHHHHHHHHhc-----------------------CCCCEEEEeCCCCCC
Confidence 37999999999999999999875 999999999999998864 369999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHc-CCCEEEECCCCHHHHHHHHHHHhhc
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV-GMNAYLTKPIDSERMVSTILRLTKN 1167 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~a-G~d~yL~KP~~~~~L~~~I~~l~~~ 1167 (1177)
||++++++||+.. +++|||++|++.+.....++++. |+++||.||++.++|..+|.++.+.
T Consensus 58 ~g~~~~~~l~~~~-----~~~~ii~~s~~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~ 119 (139)
T 2jk1_A 58 TGVDFLTEVRERW-----PETVRIIITGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAARM 119 (139)
T ss_dssp CHHHHHHHHHHHC-----TTSEEEEEESCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhC-----CCCcEEEEeCCCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHHHHH
Confidence 9999999999752 45899999999988888888876 5999999999999999999887643
No 105
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=99.67 E-value=4.7e-16 Score=150.20 Aligned_cols=120 Identities=25% Similarity=0.414 Sum_probs=109.3
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC-C
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP-K 1100 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP-~ 1100 (1177)
.+||||||++..+..+..+|+..|++|..+.++.+|++.+.. .+||+||+|+.|| .
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~-----------------------~~~dlvi~d~~~~~~ 62 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRR-----------------------DRPDLVVLAVDLSAG 62 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHH-----------------------HCCSEEEEESBCGGG
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHh-----------------------cCCCEEEEeCCCCCC
Confidence 589999999999999999999999999999999999999865 2699999999999 9
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1101 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1101 mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
++|++++++||+... .+++|||++ +....+...+++++|+++|+.||++.++|..+|+++++..
T Consensus 63 ~~g~~~~~~l~~~~~---~~~~~ii~~-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 126 (127)
T 2gkg_A 63 QNGYLICGKLKKDDD---LKNVPIVII-GNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIGFP 126 (127)
T ss_dssp CBHHHHHHHHHHSTT---TTTSCEEEE-ECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHHhcCcc---ccCCCEEEE-ecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHcCC
Confidence 999999999998632 256999999 8888888899999999999999999999999999988653
No 106
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=99.67 E-value=4.6e-16 Score=157.10 Aligned_cols=119 Identities=22% Similarity=0.363 Sum_probs=108.8
Q ss_pred CcEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1100 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~ 1100 (1177)
+.+||||||++..+..+..+|+..||.|..+.++.+|++.+. ...||+||+|+.||+
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-----------------------~~~~dliild~~l~~ 59 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLS-----------------------ADFAGIVISDIRMPG 59 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCC-----------------------TTCCSEEEEESCCSS
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHH-----------------------hCCCCEEEEeCCCCC
Confidence 468999999999999999999999999999999999998774 246999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001044 1101 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1167 (1177)
Q Consensus 1101 mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~ 1167 (1177)
++|+++++.||+.. +.+|||++|+....+...+++++|+++||.||++.++|..+|.+++++
T Consensus 60 ~~g~~~~~~l~~~~-----~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 121 (155)
T 1qkk_A 60 MDGLALFRKILALD-----PDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEK 121 (155)
T ss_dssp SCHHHHHHHHHHHC-----TTSCEEEEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhC-----CCCCEEEEECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Confidence 99999999999752 469999999999998999999999999999999999999999888753
No 107
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=99.67 E-value=6.6e-16 Score=153.21 Aligned_cols=127 Identities=24% Similarity=0.335 Sum_probs=110.0
Q ss_pred CcEEEEEecChHHHHHHHHHHhhcCC--EEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEKVGA--TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1098 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~~G~--~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~M 1098 (1177)
..+||||||++..+..+..+|+..|+ .|..+.++.+|++.+.... .....+||+||+|+.|
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~-----------------~~~~~~~dlii~D~~l 69 (143)
T 2qvg_A 7 KVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRN-----------------KENKIHPKLILLDINI 69 (143)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCT-----------------TCCCCCCSEEEEETTC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcc-----------------cccCCCCCEEEEecCC
Confidence 46899999999999999999999998 9999999999999986310 0002479999999999
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001044 1099 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1167 (1177)
Q Consensus 1099 P~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~ 1167 (1177)
|+++|++++++||+... .+++|||++|+....+...+++++|+++||.||++.++|..++......
T Consensus 70 ~~~~g~~~~~~l~~~~~---~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~~~~ 135 (143)
T 2qvg_A 70 PKMNGIEFLKELRDDSS---FTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQSM 135 (143)
T ss_dssp TTSCHHHHHHHHTTSGG---GTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHcCcc---ccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHHh
Confidence 99999999999998532 2469999999999999999999999999999999999999998765543
No 108
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=99.67 E-value=2.2e-16 Score=170.58 Aligned_cols=120 Identities=25% Similarity=0.410 Sum_probs=110.6
Q ss_pred CcEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1100 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~ 1100 (1177)
.++||||||++..+..+..+|+..|+.|..+.++.+|++.+.. .+||+||+|+.||+
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~-----------------------~~~dlvllD~~l~~ 63 (233)
T 1ys7_A 7 SPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATE-----------------------NRPDAIVLDINMPV 63 (233)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------------------SCCSEEEEESSCSS
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHh-----------------------CCCCEEEEeCCCCC
Confidence 4689999999999999999999999999999999999998864 37999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1101 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1101 mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
|||++++++||+.. +++|||++|++...+...+++++|+++||.||++.++|..+|.+++++.
T Consensus 64 ~~g~~~~~~l~~~~-----~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 126 (233)
T 1ys7_A 64 LDGVSVVTALRAMD-----NDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRR 126 (233)
T ss_dssp SCHHHHHHHHHHTT-----CCCCEEEEECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcC-----CCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 99999999999753 4699999999999888889999999999999999999999999988653
No 109
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.67 E-value=3.9e-16 Score=183.05 Aligned_cols=117 Identities=22% Similarity=0.374 Sum_probs=108.7
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1101 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~m 1101 (1177)
++||||||++..+..++.+|+..||.|..+.+|.+|++.+.. ..||+||+|++||+|
T Consensus 1 m~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~-----------------------~~~DlvllD~~mp~~ 57 (387)
T 1ny5_A 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSE-----------------------KHFNVVLLDLLLPDV 57 (387)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHH-----------------------SCCSEEEEESBCSSS
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh-----------------------CCCCEEEEeCCCCCC
Confidence 379999999999999999999999999999999999999864 369999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1166 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~ 1166 (1177)
||++++++||+.. +++|||++|++.+.+...+++++|+++||.||++.++|..+|.++++
T Consensus 58 dG~ell~~lr~~~-----~~~pvIvlT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~ 117 (387)
T 1ny5_A 58 NGLEILKWIKERS-----PETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIE 117 (387)
T ss_dssp BHHHHHHHHHHHC-----TTSEEEEEEETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhC-----CCCcEEEEeCCCCHHHHHHHHhcCceEEecCCCCHHHHHHHHHHHHH
Confidence 9999999999752 46999999999999999999999999999999999999999987764
No 110
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=99.66 E-value=1.3e-15 Score=150.36 Aligned_cols=118 Identities=16% Similarity=0.242 Sum_probs=107.1
Q ss_pred cCCcEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001044 1019 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1098 (1177)
Q Consensus 1019 ~~g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~M 1098 (1177)
..+.+||||||++..+..+..+|+..|+.|..+.++.+|++.+.. ..||+|| |
T Consensus 16 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~-----------------------~~~dlvi----~ 68 (137)
T 2pln_A 16 RGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDI-----------------------RNYDLVM----V 68 (137)
T ss_dssp TTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHH-----------------------SCCSEEE----E
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHc-----------------------CCCCEEE----E
Confidence 456799999999999999999999999999999999999999864 3699999 9
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHHhhcC
Q 001044 1099 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPI-DSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1099 P~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~-~~~~L~~~I~~l~~~~ 1168 (1177)
|+++|++++++||+. + .++|||++|+....+...+++++|+++||.||+ +.++|..+|.+++++.
T Consensus 69 ~~~~g~~~~~~l~~~-~----~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~~ 134 (137)
T 2pln_A 69 SDKNALSFVSRIKEK-H----SSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFW 134 (137)
T ss_dssp CSTTHHHHHHHHHHH-S----TTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC--
T ss_pred cCccHHHHHHHHHhc-C----CCccEEEEeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHHhhh
Confidence 999999999999975 2 158999999999999999999999999999999 9999999999988654
No 111
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=99.66 E-value=2.2e-16 Score=154.62 Aligned_cols=121 Identities=18% Similarity=0.263 Sum_probs=107.3
Q ss_pred CcEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1100 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~ 1100 (1177)
..+||||||++..+..++.+|+..|+.|..+.++++|++.+. .. ||+||+|+.||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-----------------------~~-~dlvi~D~~l~~ 58 (135)
T 3eqz_A 3 LNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSL-----------------------NK-QDIIILDLMMPD 58 (135)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSCC-----------------------CT-TEEEEEECCTTT
T ss_pred cceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHHhhc-----------------------cC-CCEEEEeCCCCC
Confidence 368999999999999999999999999999999999988663 24 999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEecCCCH-----HHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCCC
Q 001044 1101 MDGYEATIEIRKSESEHGARNIPIVALTAHAMN-----ADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPS 1170 (1177)
Q Consensus 1101 mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~-----~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~~~ 1170 (1177)
++|++++++||+.. +.+|||++|++... +...+++++|+++||.||++.++|..+|.++......
T Consensus 59 ~~g~~~~~~l~~~~-----~~~~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~~~ 128 (135)
T 3eqz_A 59 MDGIEVIRHLAEHK-----SPASLILISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQAE 128 (135)
T ss_dssp THHHHHHHHHHHTT-----CCCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC--
T ss_pred CCHHHHHHHHHhCC-----CCCCEEEEEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhccc
Confidence 99999999999753 46899999999875 6667899999999999999999999999999876654
No 112
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=99.66 E-value=5.1e-16 Score=168.98 Aligned_cols=118 Identities=29% Similarity=0.455 Sum_probs=109.9
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1101 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~m 1101 (1177)
.+||||||++..+..++.+|+..|+.|..+.++.+|++.+.. ..||+||+|+.||+|
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~-----------------------~~~dlvilD~~l~~~ 62 (238)
T 2gwr_A 6 QRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRE-----------------------LRPDLVLLDLMLPGM 62 (238)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHH-----------------------HCCSEEEEESSCSSS
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh-----------------------CCCCEEEEeCCCCCC
Confidence 589999999999999999999999999999999999998864 269999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
+|++++++||+. ..+|||++|+..+.+...+++++|+++||.||++.++|..+|+.++++.
T Consensus 63 ~g~~~~~~lr~~------~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 123 (238)
T 2gwr_A 63 NGIDVCRVLRAD------SGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRN 123 (238)
T ss_dssp CHHHHHHHHHTT------CCCCEEEEEETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCCC
T ss_pred CHHHHHHHHHhC------CCCcEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 999999999974 2589999999999888999999999999999999999999999998765
No 113
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=99.66 E-value=2.5e-16 Score=157.21 Aligned_cols=110 Identities=20% Similarity=0.395 Sum_probs=93.4
Q ss_pred CCcEEEEEecChHHHHHHHHHHhhc-CCEEE-EEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCC
Q 001044 1020 EGLRILLAEDTPLIQIVACKILEKV-GATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ 1097 (1177)
Q Consensus 1020 ~g~~ILIVdD~~~~~~~l~~~L~~~-G~~v~-~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~ 1097 (1177)
.+.+||||||++..+..++.+|++. |+.+. .+.++.+|++.+.. ...||+||+|+.
T Consensus 12 ~~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~----------------------~~~~dlvilD~~ 69 (145)
T 3kyj_B 12 SPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAA----------------------QPNVDLILLDIE 69 (145)
T ss_dssp CSEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHH----------------------CTTCCEEEECTT
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHhc----------------------CCCCCEEEEeCC
Confidence 4569999999999999999999988 88865 89999999999864 126999999999
Q ss_pred CCCCCHHHHHHHHHhcccccCCCCcceEEEec--CCCHHHHHHHHHcCCCEEEECCCCHHHH
Q 001044 1098 MPKMDGYEATIEIRKSESEHGARNIPIVALTA--HAMNADEKKCLGVGMNAYLTKPIDSERM 1157 (1177)
Q Consensus 1098 MP~mdG~e~~r~IR~~~~~~~~~~ipIIalTa--~~~~~~~~~~l~aG~d~yL~KP~~~~~L 1157 (1177)
||+|+|++++++||+.. .+|||++|+ ....+...+|+++|+++||.||++.++|
T Consensus 70 l~~~~g~~~~~~lr~~~------~~~iiil~~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l 125 (145)
T 3kyj_B 70 MPVMDGMEFLRHAKLKT------RAKICMLSSVAVSGSPHAARARELGADGVVAKPSGTVSH 125 (145)
T ss_dssp SCCCTTCHHHHHHHHHC------CCEEC-CBSSCSTTSSHHHHHHHTTCSCCCBCCCSCC--
T ss_pred CCCCCHHHHHHHHHhcC------CCCeEEEEEeccCChHHHHHHHhCCCCEEEeCCCCHHHH
Confidence 99999999999999752 278999987 5556677899999999999999994433
No 114
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=99.66 E-value=5.1e-16 Score=167.51 Aligned_cols=118 Identities=25% Similarity=0.461 Sum_probs=109.9
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1101 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~m 1101 (1177)
.+||||||++..+..+..+|+..|+.|..+.++.+|++.+.. .+||+||+|+.||+|
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-----------------------~~~dlvllD~~l~~~ 61 (230)
T 2oqr_A 5 TSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDR-----------------------AGADIVLLDLMLPGM 61 (230)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHH-----------------------HCCSEEEEESSCSSS
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-----------------------cCCCEEEEECCCCCC
Confidence 589999999999999999999999999999999999998864 269999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
+|++++++||+. +++|||++|++...+...+++++|+++||.||++.++|..+|++++++.
T Consensus 62 ~g~~~~~~l~~~------~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 122 (230)
T 2oqr_A 62 SGTDVCKQLRAR------SSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRG 122 (230)
T ss_dssp CHHHHHHHHHHH------CSCSEEEEECCHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHcC------CCCCEEEEeCCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 999999999974 2589999999998888999999999999999999999999999998764
No 115
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=99.65 E-value=5.2e-16 Score=179.13 Aligned_cols=118 Identities=27% Similarity=0.396 Sum_probs=106.8
Q ss_pred cEEEEEecChHHHHHHHHHHh-hcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILE-KVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1100 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~-~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~ 1100 (1177)
.+||||||++..+..++.+|+ ..|+.|..+.||.+|++.+.. ..||+||+|+.||+
T Consensus 19 ~~ilivdD~~~~~~~l~~~l~~~~~~~v~~~~~~~~al~~~~~-----------------------~~~dlvl~D~~mp~ 75 (358)
T 3bre_A 19 VMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQ-----------------------IKPTVILQDLVMPG 75 (358)
T ss_dssp EEEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHHH-----------------------HCCSEEEEESBCSS
T ss_pred ceEEEEECCHHHHHHHHHHHHhccCcEEEEeCCHHHHHHHHHh-----------------------CCCCEEEEeCCCCC
Confidence 579999999999999999996 469999999999999999864 26999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHh
Q 001044 1101 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLT 1165 (1177)
Q Consensus 1101 mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~ 1165 (1177)
|||++++++||+... .+++|||++|++...+...+|+++|+++||.||++.++|..+|..+.
T Consensus 76 ~~G~~~~~~l~~~~~---~~~~~ii~~s~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~l~~~v~~~~ 137 (358)
T 3bre_A 76 VDGLTLLAAYRGNPA---TRDIPIIVLSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYHS 137 (358)
T ss_dssp SBHHHHHHHHTTSTT---TTTSCEEEEESSCCHHHHHHHHHTTCSEEEESCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCcc---cCCCcEEEEeCCCCHHHHHHHHhcChheEeeccCCHHHHHHHHHHHH
Confidence 999999999997532 25699999999999999999999999999999999999999887653
No 116
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=99.64 E-value=1.8e-15 Score=147.73 Aligned_cols=123 Identities=24% Similarity=0.376 Sum_probs=108.5
Q ss_pred CCcEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001044 1020 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1099 (1177)
Q Consensus 1020 ~g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP 1099 (1177)
.+.+||||||++..+..+..+|+..|+.|..+.++.+|++.+.. ...||+||+|+.||
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~----------------------~~~~dlvi~d~~l~ 61 (132)
T 2rdm_A 4 EAVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKS----------------------GAAIDGVVTDIRFC 61 (132)
T ss_dssp SSCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHT----------------------TCCCCEEEEESCCS
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHc----------------------CCCCCEEEEeeeCC
Confidence 35799999999999999999999999999999999999999863 12699999999999
Q ss_pred C-CCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCCCC
Q 001044 1100 K-MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSE 1171 (1177)
Q Consensus 1100 ~-mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~~~~ 1171 (1177)
+ ++|++++++||+.. +++|||++|+....+...+++++| +||.||++.++|..+|+++.......
T Consensus 62 ~~~~g~~~~~~l~~~~-----~~~~ii~~s~~~~~~~~~~~~~~~--~~l~kP~~~~~l~~~i~~~~~~~~~~ 127 (132)
T 2rdm_A 62 QPPDGWQVARVAREID-----PNMPIVYISGHAALEWASNGVPDS--IILEKPFTSAQLITAVSQLLNAREGH 127 (132)
T ss_dssp SSSCHHHHHHHHHHHC-----TTCCEEEEESSCCTTHHHHSCTTC--EEEESSCCHHHHHHHHHHHHHTTC--
T ss_pred CCCCHHHHHHHHHhcC-----CCCCEEEEeCCccHHHHHhhcCCc--ceEeCCCCHHHHHHHHHHHHhcCCCC
Confidence 7 99999999999852 469999999999888887887776 89999999999999999999876554
No 117
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=99.64 E-value=1e-15 Score=145.39 Aligned_cols=117 Identities=24% Similarity=0.312 Sum_probs=105.4
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1101 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~m 1101 (1177)
.+||||||++..+..+..+|+..|+.|..+.++.+|++.+.. .+||+||+|+.||++
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~-----------------------~~~dlii~d~~~~~~ 58 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDL-----------------------LQPIVILMAWPPPDQ 58 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHH-----------------------HCCSEEEEECSTTCC
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHh-----------------------cCCCEEEEecCCCCC
Confidence 589999999999999999999999999999999999999875 269999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1167 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~ 1167 (1177)
+|++++++||+... .+++|||++|+..... +++++|+++|+.||++.++|..+|.+++++
T Consensus 59 ~~~~~~~~l~~~~~---~~~~~ii~~~~~~~~~---~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 118 (119)
T 2j48_A 59 SCLLLLQHLREHQA---DPHPPLVLFLGEPPVD---PLLTAQASAILSKPLDPQLLLTTLQGLCPP 118 (119)
T ss_dssp THHHHHHHHHHTCC---CSSCCCEEEESSCCSS---HHHHHHCSEECSSCSTTHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHhccc---cCCCCEEEEeCCCCch---hhhhcCHHHhccCCCCHHHHHHHHHHHhcC
Confidence 99999999998632 2469999999987765 899999999999999999999999877653
No 118
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=99.64 E-value=2.1e-15 Score=149.82 Aligned_cols=117 Identities=21% Similarity=0.367 Sum_probs=102.6
Q ss_pred CcEEEEEecChHHHHHHHHHHhhc-CCEE-EEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEKV-GATV-SVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1098 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~~-G~~v-~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~M 1098 (1177)
.++||||||++..+..+..+|+.. |+.+ ..+.++.+|++.+.. ..||+||+|+.|
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~-----------------------~~~dlvi~d~~l 65 (143)
T 2qv0_A 9 KMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQH-----------------------NKVDAIFLDINI 65 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHH-----------------------CCCSEEEECSSC
T ss_pred ceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh-----------------------CCCCEEEEecCC
Confidence 469999999999999999999986 8884 589999999999864 369999999999
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001044 1099 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1167 (1177)
Q Consensus 1099 P~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~ 1167 (1177)
|+++|++++++||+.. ..+|||++|+.. +...+++++|+++||.||++.++|..+|.++++.
T Consensus 66 ~~~~g~~~~~~l~~~~-----~~~~ii~~s~~~--~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (143)
T 2qv0_A 66 PSLDGVLLAQNISQFA-----HKPFIVFITAWK--EHAVEAFELEAFDYILKPYQESRIINMLQKLTTA 127 (143)
T ss_dssp SSSCHHHHHHHHTTST-----TCCEEEEEESCC--TTHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHccC-----CCceEEEEeCCH--HHHHHHHhCCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 9999999999999742 357899999874 3677899999999999999999999999988743
No 119
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=99.64 E-value=2.7e-15 Score=153.71 Aligned_cols=121 Identities=25% Similarity=0.406 Sum_probs=104.3
Q ss_pred CcEEEEEecChHHHHHHHHHHhhcC-CE-EEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEKVG-AT-VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1098 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~~G-~~-v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~M 1098 (1177)
.++||||||++..+..++.+|+..| +. +..+.++.+|++.+... +||+||+|+.|
T Consensus 25 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~-----------------------~~dlvilD~~l 81 (164)
T 3t8y_A 25 VIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIEL-----------------------KPDVITMDIEM 81 (164)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHH-----------------------CCSEEEECSSC
T ss_pred ccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhccC-----------------------CCCEEEEeCCC
Confidence 4799999999999999999999875 33 45799999999998752 69999999999
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHH--HHHHHHHcCCCEEEECCCC---------HHHHHHHHHHHhhc
Q 001044 1099 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNA--DEKKCLGVGMNAYLTKPID---------SERMVSTILRLTKN 1167 (1177)
Q Consensus 1099 P~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~--~~~~~l~aG~d~yL~KP~~---------~~~L~~~I~~l~~~ 1167 (1177)
|+++|++++++||+.. + +|||++|+..... ...+++++|+++||.||++ .++|.++|++++..
T Consensus 82 ~~~~g~~l~~~lr~~~-----~-~~ii~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~r~~~~~l~~~i~~~~~~ 155 (164)
T 3t8y_A 82 PNLNGIEALKLIMKKA-----P-TRVIMVSSLTEEGAAITIEALRNGAVDFITKPHGSISLTFRQVAPELLEKIRQAMNV 155 (164)
T ss_dssp SSSCHHHHHHHHHHHS-----C-CEEEEEESSCCTTCHHHHHHHHTTCCEEEECSSSSSCGGGGGGHHHHHHHHHHHTTS
T ss_pred CCCCHHHHHHHHHhcC-----C-ceEEEEecCCccchHHHHHHHHcCcCEEEeCCCCHHHHHHHhhhHHHHHHHHHHhCC
Confidence 9999999999999752 2 7999999977654 5679999999999999999 78899999988876
Q ss_pred CCC
Q 001044 1168 MPS 1170 (1177)
Q Consensus 1168 ~~~ 1170 (1177)
...
T Consensus 156 ~~~ 158 (164)
T 3t8y_A 156 DPR 158 (164)
T ss_dssp CC-
T ss_pred Cch
Confidence 543
No 120
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=99.63 E-value=1.2e-15 Score=153.66 Aligned_cols=122 Identities=16% Similarity=0.293 Sum_probs=100.0
Q ss_pred CcEEEEEecChHHHHHHHHHHhhc-CC-EEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEKV-GA-TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1098 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~~-G~-~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~M 1098 (1177)
.++||||||++..+..+..+|+.. |+ .|..+.++.+|++.+.. ..+||+||+|+.|
T Consensus 3 ~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~----------------------~~~~dlvi~d~~l 60 (154)
T 2qsj_A 3 LTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEA----------------------DNTVDLILLDVNL 60 (154)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHT----------------------TCCCSEEEECC--
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhc----------------------cCCCCEEEEeCCC
Confidence 368999999999999999999988 88 78899999999999863 1479999999999
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCC
Q 001044 1099 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1169 (1177)
Q Consensus 1099 P~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~~ 1169 (1177)
|+++|++++++||+.. +.+|||++|+....+...+++++|+++||.||++.++|..+|.+++++..
T Consensus 61 ~~~~g~~~~~~l~~~~-----~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~~~ 126 (154)
T 2qsj_A 61 PDAEAIDGLVRLKRFD-----PSNAVALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGEI 126 (154)
T ss_dssp ----CHHHHHHHHHHC-----TTSEEEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTCC
T ss_pred CCCchHHHHHHHHHhC-----CCCeEEEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcCCE
Confidence 9999999999999862 46899999999988889999999999999999999999999999987653
No 121
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=99.63 E-value=1.5e-15 Score=162.90 Aligned_cols=116 Identities=21% Similarity=0.372 Sum_probs=107.3
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1101 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~m 1101 (1177)
++||||||++..+..+..+|+..| .|..+.++.+|++.+ ..||+||+|+.||+|
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~~~-------------------------~~~dlvllD~~lp~~ 56 (220)
T 1p2f_A 3 WKIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDE-------------------------EAFHVVVLDVMLPDY 56 (220)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHHCC-------------------------SCCSEEEEESBCSSS
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHHhc-------------------------CCCCEEEEeCCCCCC
Confidence 489999999999999999999999 999999999998854 269999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
||++++++||+.. +++|||++|++...+...+++++|+++||.||++.++|..+|.+++++.
T Consensus 57 ~g~~~~~~lr~~~-----~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 118 (220)
T 1p2f_A 57 SGYEICRMIKETR-----PETWVILLTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLERE 118 (220)
T ss_dssp BHHHHHHHHHHHC-----TTSEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHhcC-----CCCcEEEEEcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHccc
Confidence 9999999999753 4589999999999999999999999999999999999999999998764
No 122
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=99.62 E-value=2.8e-16 Score=169.57 Aligned_cols=121 Identities=9% Similarity=0.048 Sum_probs=105.1
Q ss_pred CcEEEEEecChHHHHHHHHHHhh-cCCEEEE-EcCHHHHHHH-HHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEK-VGATVSV-VPDGLQAVEA-LNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ 1097 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~-~G~~v~~-a~nG~eAl~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~ 1097 (1177)
.++||||||++..+..++.+|+. .|+.+.. +.++.+++.. +. ..+||+||+|++
T Consensus 7 ~~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~~~~~~~~~~~-----------------------~~~~dlvllD~~ 63 (225)
T 3klo_A 7 KLNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKPE-----------------------SRSIQMLVIDYS 63 (225)
T ss_dssp SEEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCSG-----------------------GGGCCEEEEEGG
T ss_pred ceEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCCcHHHHHHHhh-----------------------ccCCCEEEEeCC
Confidence 36899999999999999999994 6888865 4677777654 33 236999999999
Q ss_pred CCCCCHHHHHHHHHh-cccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCC
Q 001044 1098 MPKMDGYEATIEIRK-SESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1169 (1177)
Q Consensus 1098 MP~mdG~e~~r~IR~-~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~~ 1169 (1177)
||+|||++++++||+ .. +++|||++|++.+.+....++++|+++||.||++.++|..+|++++++..
T Consensus 64 mp~~~G~~~~~~lr~~~~-----~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 131 (225)
T 3klo_A 64 RISDDVLTDYSSFKHISC-----PDAKEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQDEM 131 (225)
T ss_dssp GCCHHHHHHHHHHHHHHC-----TTCEEEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHhhC-----CCCcEEEEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHCCCE
Confidence 999999999999997 32 46999999999998889999999999999999999999999999987653
No 123
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=99.62 E-value=9.7e-16 Score=180.44 Aligned_cols=121 Identities=26% Similarity=0.375 Sum_probs=106.9
Q ss_pred cEEEEEecChHHHHHHHHHHhh-cCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEK-VGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1100 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~-~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~ 1100 (1177)
++||||||++.++..++.+|++ .|+.|..|.||++|++.+... .+||+||+|++||+
T Consensus 4 ~~ILivDD~~~~~~~l~~~L~~~~~~~v~~a~~g~eal~~l~~~----------------------~~~DlvllDi~mP~ 61 (400)
T 3sy8_A 4 LNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILESC----------------------GHVDIAICDLQMSG 61 (400)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHH----------------------SCEEEEEECSSCSS
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCCcEEEEecCHHHHHHHHhhC----------------------CCCCEEEEeCCCCC
Confidence 6899999999999999999998 578999999999999998641 36999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEecCCCH-----HHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCC
Q 001044 1101 MDGYEATIEIRKSESEHGARNIPIVALTAHAMN-----ADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1169 (1177)
Q Consensus 1101 mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~-----~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~~ 1169 (1177)
|||++++++||+.. +.+|||++|+.... ....+|+++|+++||.||++.++|..+|.++++...
T Consensus 62 ~dG~ell~~l~~~~-----~~~~ii~~s~~~~~~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~~~~~~ 130 (400)
T 3sy8_A 62 MDGLAFLRHASLSG-----KVHSVILSSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRYNARRQ 130 (400)
T ss_dssp SCHHHHHHHHHHHT-----CEEEEEESCCCCGGGHHHHHHHHHTTTCEEEEECCSSCCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHhcC-----CCceEEEEcCchHHHHHHHHHHHHHcCCeeccCcCCCcCHHHHHHHHHHHHHhhh
Confidence 99999999999753 34778888887766 667789999999999999999999999999886543
No 124
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=99.62 E-value=3.2e-16 Score=169.38 Aligned_cols=119 Identities=14% Similarity=0.242 Sum_probs=108.5
Q ss_pred cEEEEEecChHHHHHHHHHHhhcC-CEE-EEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVG-ATV-SVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1099 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G-~~v-~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP 1099 (1177)
++||||||++..+..++.+|+..| +.+ ..+.++.+|++.+... +||+||+|+.||
T Consensus 2 ~~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~~~-----------------------~~dlvllD~~lp 58 (225)
T 3c3w_A 2 VKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAA-----------------------RPDVAVLDVRLP 58 (225)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHHHH-----------------------CCSEEEECSEET
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhc-----------------------CCCEEEEeCCCC
Confidence 489999999999999999999887 885 4799999999998652 699999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1100 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1100 ~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
+|||++++++||+.. +.+|||++|+..+.+...+++++|+++||.||++.++|..+|++++++.
T Consensus 59 ~~~g~~~~~~lr~~~-----~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 122 (225)
T 3c3w_A 59 DGNGIELCRDLLSRM-----PDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAGR 122 (225)
T ss_dssp TEEHHHHHHHHHHHC-----TTCEEEEGGGSSSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred CCCHHHHHHHHHHhC-----CCCcEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcCC
Confidence 999999999999752 4699999999999999999999999999999999999999999887653
No 125
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=99.61 E-value=8.9e-16 Score=184.98 Aligned_cols=117 Identities=18% Similarity=0.179 Sum_probs=95.0
Q ss_pred EEeC-HHHHHHHHHHHHhhHhhccCCCe----EEEEeeccccCCCCCCCcCCcccccccchhhhhhhhhhcccccccCCC
Q 001044 605 VRGD-PGRVFQIFSNLINNSIKFTSSGH----IIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDN 679 (1177)
Q Consensus 605 V~gD-~~rL~QIL~NLL~NAIKfT~~G~----v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (1177)
+.+| +.+|.|||.|||+||++|+..|+ |.|.+... ..+
T Consensus 24 i~~~d~~~L~qvl~NLV~NAida~~~gg~~p~I~I~i~~~-------------------------------------~~~ 66 (530)
T 2zbk_B 24 GFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLI-------------------------------------DDA 66 (530)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEE-------------------------------------ETT
T ss_pred EEcCcHHHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEEC-------------------------------------CCc
Confidence 4445 59999999999999999998754 66554211 001
Q ss_pred ceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCC-CCCCccchhHHHHHHHHHHcCCE-EEEEEeCCCce-EEEEEEec
Q 001044 680 KLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTT-RKHGGTGLGLSIVRTLVNKMGGE-IKVVKKNSPGT-LMQLYLLL 756 (1177)
Q Consensus 680 ~~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~-~~~~GtGLGLaIvk~IVe~~GG~-I~v~S~~g~GT-~f~~~Lpl 756 (1177)
...+.|+|.|||+||+++.++++|++|++.+.... +..+|+||||++|+.++++|||+ |.+.|..+.|+ +|+|.||+
T Consensus 67 ~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~~~~~~gg~GLGLsiv~~l~~~~gG~~I~V~S~~~~g~~~~~~~Lpl 146 (530)
T 2zbk_B 67 RQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKI 146 (530)
T ss_dssp TTEEEEEEECCSCCCCGGGSHHHHTSCCCSCCCCCSCCSCSSSSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHhccccccCCcccccCCCCccchHHHHHHHHHHhCCCceEEEEecCCCeEEEEEEEEe
Confidence 23478999999999999999999999988776433 45689999999999999999999 99999999887 88888887
Q ss_pred CC
Q 001044 757 GA 758 (1177)
Q Consensus 757 ~~ 758 (1177)
..
T Consensus 147 ~~ 148 (530)
T 2zbk_B 147 DI 148 (530)
T ss_dssp ET
T ss_pred cc
Confidence 54
No 126
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=99.61 E-value=1.2e-15 Score=150.87 Aligned_cols=119 Identities=19% Similarity=0.280 Sum_probs=102.4
Q ss_pred cCCcEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001044 1019 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1098 (1177)
Q Consensus 1019 ~~g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~M 1098 (1177)
..+.+||||||++..+..+..+|+..|+.|..+.++.+|++.+.. ...||+||+|+.|
T Consensus 13 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~----------------------~~~~dlvilD~~l 70 (138)
T 2b4a_A 13 MQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQ----------------------LSTCDLLIVSDQL 70 (138)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGG----------------------GGSCSEEEEETTC
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHh----------------------CCCCCEEEEeCCC
Confidence 456799999999999999999999999999999999999998753 0369999999999
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEe-cCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1099 PKMDGYEATIEIRKSESEHGARNIPIVALT-AHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1099 P~mdG~e~~r~IR~~~~~~~~~~ipIIalT-a~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
|+++|++++++||+. .+++|||++| +....+. .+++ +++||.||++.++|..+|++++++.
T Consensus 71 ~~~~g~~~~~~l~~~-----~~~~~ii~ls~~~~~~~~-~~~~---~~~~l~KP~~~~~L~~~i~~~~~~~ 132 (138)
T 2b4a_A 71 VDLSIFSLLDIVKEQ-----TKQPSVLILTTGRHELIE-SSEH---NLSYLQKPFAISELRAAIDYHKPSM 132 (138)
T ss_dssp TTSCHHHHHHHHTTS-----SSCCEEEEEESCC--CCC-CSSS---CEEEEESSCCHHHHHHHHHHTCCC-
T ss_pred CCCCHHHHHHHHHhh-----CCCCCEEEEECCCCCHHH-HHHH---HHheeeCCCCHHHHHHHHHHHHHhc
Confidence 999999999999973 2469999999 8877666 6666 9999999999999999999987654
No 127
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.61 E-value=1.3e-15 Score=181.63 Aligned_cols=117 Identities=18% Similarity=0.200 Sum_probs=95.8
Q ss_pred EEeCHHHHHHHHHHHHhhHhhccCCC----eEEEEeeccccCCCCCCCcCCcccccccchhhhhhhhhhcccccccCCCc
Q 001044 605 VRGDPGRVFQIFSNLINNSIKFTSSG----HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNK 680 (1177)
Q Consensus 605 V~gD~~rL~QIL~NLL~NAIKfT~~G----~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (1177)
+.+|+.+|.|||.|||+||++|+..| .|.|.+... ..+.
T Consensus 26 ~~~d~~~L~qvl~nLv~NAida~~~gg~~p~I~I~i~~~-------------------------------------~~~~ 68 (471)
T 1mu5_A 26 FPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLI-------------------------------------DDAR 68 (471)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEE-------------------------------------ETTT
T ss_pred EeCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEEC-------------------------------------CCcC
Confidence 45788999999999999999999765 466554211 0012
Q ss_pred eEEEEEEEeCCCCCChhhHhhhhcccccCCCCCC-CCCCccchhHHHHHHHHHHcCCE-EEEEEeCCCce-EEEEEEecC
Q 001044 681 LALCFEVDDTGCGIDQSKWETVFESFEQGDPSTT-RKHGGTGLGLSIVRTLVNKMGGE-IKVVKKNSPGT-LMQLYLLLG 757 (1177)
Q Consensus 681 ~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~-~~~~GtGLGLaIvk~IVe~~GG~-I~v~S~~g~GT-~f~~~Lpl~ 757 (1177)
..+.|+|.|||+||++++++++|++||+.+.... +..+|+||||++|+.++++|||+ |.+.|..+.|+ +|+|.||+.
T Consensus 69 ~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~~~~~~gg~GLGL~iv~~l~~~~gG~~i~v~S~~~~g~~~~~~~Lpl~ 148 (471)
T 1mu5_A 69 QIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKID 148 (471)
T ss_dssp TEEEEEEECCSCCCCGGGHHHHHHCCCCC-CCCCSCCSCSCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEC
T ss_pred cEEEEEEEECCCCCCHHHHHHHhcccccccccccccCCCCceeeHHHHHHHHHHhCCCceeEEEecCCCceEEEEEEecc
Confidence 3478999999999999999999999998765433 45689999999999999999999 99999999987 889888876
Q ss_pred C
Q 001044 758 A 758 (1177)
Q Consensus 758 ~ 758 (1177)
.
T Consensus 149 ~ 149 (471)
T 1mu5_A 149 I 149 (471)
T ss_dssp T
T ss_pred c
Confidence 4
No 128
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=99.60 E-value=1.4e-15 Score=160.19 Aligned_cols=115 Identities=14% Similarity=0.196 Sum_probs=103.0
Q ss_pred cCCcEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC
Q 001044 1019 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1098 (1177)
Q Consensus 1019 ~~g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~M 1098 (1177)
+.+.+||||||++..+..+..+|+..||.|..+.++.+|++ ..||+||+|+.|
T Consensus 10 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~---------------------------~~~dlvl~D~~m 62 (196)
T 1qo0_D 10 LRELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAFD---------------------------VPVDVVFTSIFQ 62 (196)
T ss_dssp GGGCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSCS---------------------------SCCSEEEEECCS
T ss_pred hcCCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCchhhCC---------------------------CCCCEEEEeCCC
Confidence 45679999999999999999999999999999998877551 369999999999
Q ss_pred CCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001044 1099 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1166 (1177)
Q Consensus 1099 P~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~ 1166 (1177)
|+|||+ +++.+|+.. +++|||++|++.+.+...+++++|+++||.||++.++|..+|..++.
T Consensus 63 p~~~g~-l~~~~~~~~-----~~~~ii~lt~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~~~ 124 (196)
T 1qo0_D 63 NRHHDE-IAALLAAGT-----PRTTLVALVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARR 124 (196)
T ss_dssp STHHHH-HHHHHHHSC-----TTCEEEEEECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHH
T ss_pred CccchH-HHHHHhccC-----CCCCEEEEEcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHHHH
Confidence 999999 998888642 46999999999999999999999999999999999999999987764
No 129
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=99.59 E-value=9.9e-17 Score=154.52 Aligned_cols=119 Identities=25% Similarity=0.387 Sum_probs=108.2
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1101 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~m 1101 (1177)
.+|||+||++..+..+..+|+..|+.+..+.++.+|++.+. ..+||+||+|+.||++
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-----------------------~~~~dlvi~d~~~~~~ 60 (124)
T 1dc7_A 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALA-----------------------SKTPDVLLSDIRMPGM 60 (124)
T ss_dssp CCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSS-----------------------SCCCSCEEECSCSSHH
T ss_pred cEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHh-----------------------cCCCCEEEEeeecCCC
Confidence 47999999999999999999999999999999999999874 2469999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
+|++++++||+.. +++|||++|++...+...+++++|+++|+.||++.++|..+|.+++++.
T Consensus 61 ~g~~~~~~l~~~~-----~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 122 (124)
T 1dc7_A 61 DGLALLKQIKQRH-----PMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 (124)
T ss_dssp HHCSTHHHHHHHC-----TTSCCCCBCCSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhhC-----CCCCEEEEecCCCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHHHHhh
Confidence 9999999999752 4589999999988888889999999999999999999999999988653
No 130
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=99.59 E-value=3.8e-15 Score=149.60 Aligned_cols=103 Identities=20% Similarity=0.263 Sum_probs=82.0
Q ss_pred eCHHHHHHHHHHHHhhHhhccCC----CeEEEEeeccccCCCCCCCcCCcccccccchhhhhhhhhhcccccccCCCceE
Q 001044 607 GDPGRVFQIFSNLINNSIKFTSS----GHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLA 682 (1177)
Q Consensus 607 gD~~rL~QIL~NLL~NAIKfT~~----G~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1177)
.|...+.+++.||+.||+||+.. |.|.|.+... ...
T Consensus 35 ~~~~~l~~il~~l~~Nai~h~~~~~~~~~I~i~~~~~----------------------------------------~~~ 74 (145)
T 1th8_A 35 DELTEIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIE----------------------------------------DGV 74 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEE----------------------------------------TTE
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEe----------------------------------------CCE
Confidence 58889999999999999999964 6677654321 124
Q ss_pred EEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCCC
Q 001044 683 LCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGAS 759 (1177)
Q Consensus 683 l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~IVe~~GG~I~v~S~~g~GT~f~~~Lpl~~~ 759 (1177)
+.|+|.|+|+||+ .++++|++|++.+. ...|+||||+||+++++ +|.++|.+++||+|+++||+..+
T Consensus 75 ~~i~V~D~G~g~~--~~~~~~~~~~~~~~----~~~~~GlGL~iv~~~~~----~i~~~~~~~~Gt~v~~~lp~~~~ 141 (145)
T 1th8_A 75 VHLTVRDEGVGIP--DIEEARQPLFTTKP----ELERSGMGFTIMENFMD----EVIVESEVNKGTTVYLKKHGIHH 141 (145)
T ss_dssp EEEEEEECSSCCS--CHHHHTCCC-----------CCCSCHHHHHHHHSS----EEEEEEETTTEEEEEEEECCC--
T ss_pred EEEEEEECCCCcC--hHHHhhcccccCCC----CCCCCcchHHHHHHHHh----eEEEEeCCCCCEEEEEEEecccc
Confidence 7899999999999 89999999997653 23589999999999998 99999999999999999998643
No 131
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=99.59 E-value=9.7e-15 Score=156.82 Aligned_cols=115 Identities=17% Similarity=0.256 Sum_probs=106.4
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1101 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~m 1101 (1177)
++||||||++..+..+..+|+..|+.|..+.++.+|++.+.. .+||+|| ||+|
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~-----------------------~~~dlvi----lp~~ 53 (223)
T 2hqr_A 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDI-----------------------RNYDLVM----VSDK 53 (223)
T ss_dssp CCEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHTT-----------------------SCCSEEE----ECCT
T ss_pred CEEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHhc-----------------------CCCCEEE----eCCC
Confidence 369999999999999999999999999999999999998852 4799999 9999
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHHhhcC
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPI-DSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~-~~~~L~~~I~~l~~~~ 1168 (1177)
||++++++||+. + .++|||++|++.+.+...+++++|+++||.||+ +.++|..+|.+++++.
T Consensus 54 ~g~~~~~~lr~~-~----~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~~ 116 (223)
T 2hqr_A 54 NALSFVSRIKEK-H----SSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFW 116 (223)
T ss_dssp THHHHHHHHHHH-C----TTSEEEEEESSCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSSC
T ss_pred CHHHHHHHHHhC-C----CCCcEEEEECCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhccc
Confidence 999999999976 2 258999999999999999999999999999999 9999999999998775
No 132
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.55 E-value=7e-15 Score=162.84 Aligned_cols=102 Identities=22% Similarity=0.334 Sum_probs=86.4
Q ss_pred cEEEEEecChHHHHHHHHHHhh-cCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEK-VGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1100 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~-~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~ 1100 (1177)
.+||||||++..+..+...|+. .|+.+. +.++.+++..+. ..+||+||+|++||+
T Consensus 5 ~~ILiVdD~~~~~~~l~~~L~~~~~~~v~-~~~~~~~~~~~~-----------------------~~~~dlvllD~~mP~ 60 (259)
T 3luf_A 5 QKILIVEDSMTIRRMLIQAIAQQTGLEID-AFDTLEGARHCQ-----------------------GDEYVVALVDLTLPD 60 (259)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHHCCEEE-EESSTGGGTTCC-----------------------TTTEEEEEEESCBTT
T ss_pred CeEEEEECCHHHHHHHHHHHHhcCCeEEE-EeChHHHHHHhh-----------------------cCCCcEEEEeCCCCC
Confidence 4899999999999999999976 477775 556666655432 247999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCH
Q 001044 1101 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDS 1154 (1177)
Q Consensus 1101 mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~ 1154 (1177)
|||+|++++||+. .+|||++|++.+.+++.+|+++||++||.||+..
T Consensus 61 ~~G~~~~~~lr~~-------~~pvi~lt~~~~~~~~~~a~~~Ga~dyl~Kp~~~ 107 (259)
T 3luf_A 61 APSGEAVKVLLER-------GLPVVILTADISEDKREAWLEAGVLDYVMKDSRH 107 (259)
T ss_dssp BTTSHHHHHHHHT-------TCCEEEEECC-CHHHHHHHHHTTCCEEEECSSHH
T ss_pred CCHHHHHHHHHhC-------CCCEEEEEccCCHHHHHHHHHCCCcEEEeCCchh
Confidence 9999999999962 3899999999999999999999999999999754
No 133
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.55 E-value=7.2e-13 Score=158.33 Aligned_cols=267 Identities=15% Similarity=0.172 Sum_probs=178.2
Q ss_pred EEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCceE
Q 001044 774 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 853 (1177)
Q Consensus 774 ~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 853 (1177)
.+++.+.....+..+...+...|..+..+.+...+...+.. .+..+
T Consensus 3 ~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~~~----------------------------------~~~dl 48 (459)
T 1w25_A 3 RILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAAR----------------------------------DLPDI 48 (459)
T ss_dssp EEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH----------------------------------HCCSE
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc----------------------------------CCCCE
Confidence 46777788888888888888877766655554444333221 13468
Q ss_pred EEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHhcccccc
Q 001044 854 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGKILGM 933 (1177)
Q Consensus 854 v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~~~~~~ 933 (1177)
+++|+.++++++.-+-+.++... ......+++..............+.|...++.||+....+...+..+........
T Consensus 49 vllD~~mp~~~G~~~~~~l~~~~--~~~~~pii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~~~~~~~~~ 126 (459)
T 1w25_A 49 ILLDVMMPGMDGFTVCRKLKDDP--TTRHIPVVLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRFKLVID 126 (459)
T ss_dssp EEEESCCSSSCHHHHHHHHHHST--TTTTSCEEEEECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEcCCCCCCCHHHHHHHHhcCc--ccCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHhhhh
Confidence 89999999998754333333211 1112223333333334444556678899999999999999888776654211000
Q ss_pred cccccccCCCCCCcccccccccccccchhhccccccccccCCCCCCCchhhhhhhhhhhhccccCCCCCCCCCCCCCCCc
Q 001044 934 QNRISSTTNEGNGEEIRGSIANYSASKHQKFRKCSFEFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSS 1013 (1177)
Q Consensus 934 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1013 (1177)
... . ... . . ........ .
T Consensus 127 ~~~-------------------------~-~~~---~---------------------------~--~~~~~~~~----~ 144 (459)
T 1w25_A 127 ELR-------------------------Q-REA---S---------------------------G--RRMGVIAG----A 144 (459)
T ss_dssp HHH-------------------------H-HHT---T---------------------------T--TSSTTTTC----C
T ss_pred Hhh-------------------------h-hcc---c---------------------------c--cchhhhhh----h
Confidence 000 0 000 0 0 00000000 0
Q ss_pred chhhccCCcEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001044 1014 NQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1093 (1177)
Q Consensus 1014 ~~~~~~~g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIl 1093 (1177)
.......+.+||+|||+..++..+...|.. .+.+....++.+++.. .. ..||+|+
T Consensus 145 ~~~~~~~~~~ilivdd~~~~~~~i~~~L~~-~~~~~~~~~~~~~~~~-~~-----------------------~~~dlil 199 (459)
T 1w25_A 145 AARLDGLGGRVLIVDDNERQAQRVAAELGV-EHRPVIESDPEKAKIS-AG-----------------------GPVDLVI 199 (459)
T ss_dssp CCCCSSCSCEEEEECSCHHHHHHHHHHHTT-TSEEEEECCHHHHHHH-HH-----------------------SSCSEEE
T ss_pred hhhhcCCCCeEEEECCchhhHHHHHHHHhc-ccceeeccCHHHHhhh-cc-----------------------CCCCEEE
Confidence 000112345899999999999988888875 4678888898888632 21 3699999
Q ss_pred EeCCCCCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001044 1094 MDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1166 (1177)
Q Consensus 1094 mDi~MP~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~ 1166 (1177)
||++||+|||+++++.||+... ..++||+++|+.....+..+|+++||++|+.||++.+++...+..+++
T Consensus 200 ~D~~mp~~dG~~~~~~ir~~~~---~~~~pii~lt~~~~~~~~~~~l~~Ga~d~~~kp~~~~~l~~~v~~~~~ 269 (459)
T 1w25_A 200 VNAAAKNFDGLRFTAALRSEER---TRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQ 269 (459)
T ss_dssp EETTCSSSCHHHHHHHHHTSGG---GTTCCEEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred EecCCCCCcHHHHHHHHHhCcc---ccCCcEEEEcCCCchHHHHHHHhccccccccCCCCHHHHHHHHHHHHH
Confidence 9999999999999999998654 257999999999999999999999999999999999999888876653
No 134
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=99.53 E-value=5.8e-14 Score=162.19 Aligned_cols=117 Identities=21% Similarity=0.430 Sum_probs=103.4
Q ss_pred cEEEEEecChHHHHHHHHHHhhc-CCE-EEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKV-GAT-VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1099 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~-G~~-v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP 1099 (1177)
.+||||||++..+..++.+|+.. |++ +..+.|+.+|++.+... .||+|++|+.||
T Consensus 4 ~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l~~~-----------------------~pDlVllDi~mp 60 (349)
T 1a2o_A 4 IRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKF-----------------------NPDVLTLDVEMP 60 (349)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHH-----------------------CCSEEEEECCCS
T ss_pred CEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHhcc-----------------------CCCEEEEECCCC
Confidence 68999999999999999999986 898 56999999999998752 699999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEecCCCH--HHHHHHHHcCCCEEEECCCCH---------HHHHHHHHHHhhc
Q 001044 1100 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMN--ADEKKCLGVGMNAYLTKPIDS---------ERMVSTILRLTKN 1167 (1177)
Q Consensus 1100 ~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~--~~~~~~l~aG~d~yL~KP~~~---------~~L~~~I~~l~~~ 1167 (1177)
+|||++++++||+.. + +|||++|+.... +...+++++|+++||.||++. ++|..+|+.+.+.
T Consensus 61 ~~dGlell~~l~~~~-----p-~pVIvlS~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~l~~~~~~L~~~I~~~~~~ 133 (349)
T 1a2o_A 61 RMDGLDFLEKLMRLR-----P-MPVVMVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTAARA 133 (349)
T ss_dssp SSCHHHHHHHHHHSS-----C-CCEEEEECCTHHHHHHHHHHHHHTCCEEEECSSSSCSSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHhcC-----C-CcEEEEECCCcccHHHHHHHHhCCceEEEECCCCccchhHHHHHHHHHHHHHHHHhh
Confidence 999999999999742 2 899999998875 347899999999999999984 8899999887654
No 135
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.51 E-value=1.5e-14 Score=182.97 Aligned_cols=120 Identities=13% Similarity=0.111 Sum_probs=108.4
Q ss_pred cEEEEEecCh-HH-------HHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001044 1022 LRILLAEDTP-LI-------QIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1093 (1177)
Q Consensus 1022 ~~ILIVdD~~-~~-------~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIl 1093 (1177)
++||||||++ .. ++.++..|++.||+|..|.||++|++.+.. ...||+||
T Consensus 1 m~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~~----------------------~~~~d~vi 58 (755)
T 2vyc_A 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSS----------------------NEAIDCLM 58 (755)
T ss_dssp CEEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTT----------------------TCCCSEEE
T ss_pred CeEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhc----------------------CCCCcEEE
Confidence 3799999999 88 999999999999999999999999999852 23599999
Q ss_pred EeCCCCC----CCHHHHHHHHHhcccccCCCCcceEEEecCCC-HHHHHHHHHcCCCEEEECCCCHHH-HHHHHHHHhhc
Q 001044 1094 MDCQMPK----MDGYEATIEIRKSESEHGARNIPIVALTAHAM-NADEKKCLGVGMNAYLTKPIDSER-MVSTILRLTKN 1167 (1177)
Q Consensus 1094 mDi~MP~----mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~-~~~~~~~l~aG~d~yL~KP~~~~~-L~~~I~~l~~~ 1167 (1177)
+|++||+ |||++++++||+.. ..+|||++|+... .+++...+..|+|||+.||++..+ |..+|++++++
T Consensus 59 lDi~lp~~~~~~~G~~ll~~iR~~~-----~~iPIi~lTa~~~~~~d~~~~l~~gaddyi~kpf~~~efl~~ri~a~~rr 133 (755)
T 2vyc_A 59 FSYQMEHPDEHQNVRQLIGKLHERQ-----QNVPVFLLGDREKALAAMDRDLLELVDEFAWILEDTADFIAGRAVAAMTR 133 (755)
T ss_dssp EECCCCSHHHHHHHHHHHHHHHHHS-----TTCCEEEEECHHHHHHTCSHHHHHHCSEEEETTTSCHHHHHHHHHHHHHH
T ss_pred EeCCCCcccccccHHHHHHHHHHhC-----CCCCEEEEecCCcchhhccHhHhhcCCceEeCCCCCHHHHHHHHHHHHHH
Confidence 9999999 99999999999863 3599999999988 888999999999999999999999 88999888765
Q ss_pred C
Q 001044 1168 M 1168 (1177)
Q Consensus 1168 ~ 1168 (1177)
.
T Consensus 134 ~ 134 (755)
T 2vyc_A 134 Y 134 (755)
T ss_dssp H
T ss_pred h
Confidence 3
No 136
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=99.33 E-value=1.4e-12 Score=159.22 Aligned_cols=114 Identities=18% Similarity=0.324 Sum_probs=86.1
Q ss_pred EEeCHHHHHHHHHHHHhhHhhccCC-C---eEEEEeeccccCCCCCCCcCCcccccccchhhhhhhhhhcccccccCCCc
Q 001044 605 VRGDPGRVFQIFSNLINNSIKFTSS-G---HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNK 680 (1177)
Q Consensus 605 V~gD~~rL~QIL~NLL~NAIKfT~~-G---~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (1177)
+.+|+.+|.|++.|||+||++|+.. | .|.|.+.. ++.
T Consensus 31 ~~~D~~~L~~Vl~ELV~NAIDa~~~~g~~~~I~V~i~~---------------------------------------~~~ 71 (621)
T 2q2e_B 31 FDSAPRSLITTVKEAVDNALDACEEAGILPDILVQVER---------------------------------------TGP 71 (621)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHTTTSCSCEEEECCEE---------------------------------------ETT
T ss_pred EecCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEE---------------------------------------CCC
Confidence 5689999999999999999999984 4 45543211 111
Q ss_pred eEEEEEEEeCCCCCChhhHhhhhcccccCCCC--CCCCCCccchhHHHHHHHHHHcCCE-EEEEEeCCC---ceEEEEEE
Q 001044 681 LALCFEVDDTGCGIDQSKWETVFESFEQGDPS--TTRKHGGTGLGLSIVRTLVNKMGGE-IKVVKKNSP---GTLMQLYL 754 (1177)
Q Consensus 681 ~~l~i~V~DtG~GI~~e~l~~IFe~F~q~d~s--~~~~~~GtGLGLaIvk~IVe~~GG~-I~v~S~~g~---GT~f~~~L 754 (1177)
..+.|+|.|+|+|||++.++++|++|+.++.. .....+|+||||++|+.+++.|||+ |.++|..+. |++|+|.+
T Consensus 72 ~~~~I~V~DnG~GIp~e~l~~iF~~~~atskf~~~~~s~Gg~GlGLsiv~~ls~~~gG~~I~V~S~~~gg~~g~~~~~~l 151 (621)
T 2q2e_B 72 DYVTVIIEDNGPGIVREQIPKVFAKLLYGSRFHALKQSRGQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMI 151 (621)
T ss_dssp TEEEEEEECCSCCCCGGGHHHHHSCCCCC--CCCCC-CCSSSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCC
T ss_pred cEEEEEEEECCCCCCHHHHHHHhhhhccCCccccccccCCCceechhhhhHHHHHhCCCceeEEeeccCCccceEEEEec
Confidence 24679999999999999999999877544321 1123479999999999999999999 899998764 55555555
Q ss_pred ecC
Q 001044 755 LLG 757 (1177)
Q Consensus 755 pl~ 757 (1177)
|..
T Consensus 152 p~~ 154 (621)
T 2q2e_B 152 NTS 154 (621)
T ss_dssp CSS
T ss_pred chh
Confidence 543
No 137
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=98.92 E-value=7.1e-10 Score=119.34 Aligned_cols=94 Identities=23% Similarity=0.391 Sum_probs=77.7
Q ss_pred CCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcce
Q 001044 1045 GATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPI 1124 (1177)
Q Consensus 1045 G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~mdG~e~~r~IR~~~~~~~~~~ipI 1124 (1177)
.+.|..+.|+.+|++.+... .||+||+|++||+|||++++++||+..+ ..+|
T Consensus 5 v~~v~~~~~~~~a~~~~~~~-----------------------~~dlvl~D~~~p~~~g~~~~~~l~~~~~-----~~~i 56 (237)
T 3cwo_X 5 VLIVDDATNGREAVEKYKEL-----------------------KPDIVTMDITMPEMNGIDAIKEIMKIDP-----NAKI 56 (237)
T ss_dssp EEEEECCCSSSTTHHHHHHH-----------------------CCSCEEEECCSTTSSHHHHHHHHHHHSS-----SCCE
T ss_pred EEEEEECCCHHHHHHHHHhc-----------------------CCCEEEEeCCCCCCCHHHHHHHHHHhCC-----CCCE
Confidence 34556689999999998752 6999999999999999999999998643 2455
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEECC--CCHHHHHHHHHHHhh
Q 001044 1125 VALTAHAMNADEKKCLGVGMNAYLTKP--IDSERMVSTILRLTK 1166 (1177)
Q Consensus 1125 IalTa~~~~~~~~~~l~aG~d~yL~KP--~~~~~L~~~I~~l~~ 1166 (1177)
+++++....+...+++++|+++|+.|| ++..+|...+.+.+.
T Consensus 57 ~vi~~~~~~~~~~~~~~~Ga~~~l~kp~~~~~~~l~~~i~~~~~ 100 (237)
T 3cwo_X 57 IVCSAMGQQAMVIEAIKAGAKDFIVNTAAVENPSLITQIAQTFG 100 (237)
T ss_dssp EEECCSSTHHHHHHHHHTTCCEEEESHHHHHCTHHHHHHHHHHT
T ss_pred EEEECCCCHHHHHHHHHCCHHheEeCCcccChHHHHHHHHHHhC
Confidence 556666668888999999999999999 788899988887764
No 138
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=98.36 E-value=2.7e-07 Score=107.55 Aligned_cols=86 Identities=21% Similarity=0.292 Sum_probs=65.6
Q ss_pred EeCHHHHHHHHHHHHhhHhhccCCCeEEEEeeccccCCCCCCCcCCcccccccchhhhhhhhhhcccccccCCCceEEEE
Q 001044 606 RGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCF 685 (1177)
Q Consensus 606 ~gD~~rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 685 (1177)
.++...+.+++.|+|+||+++ ..+.|.|.+.. ++ .|
T Consensus 31 ~g~~~~v~Elv~N~iD~a~~~-~~~~I~V~i~~---------------------------------------~~----~i 66 (390)
T 1kij_A 31 EGYHHLFKEILDNAVDEALAG-YATEILVRLNE---------------------------------------DG----SL 66 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-SCCEEEEEECT---------------------------------------TS----CE
T ss_pred chHHHHHHHHHHHHHHHhhhC-CCCEEEEEEEc---------------------------------------CC----EE
Confidence 578899999999999999995 34566665311 11 48
Q ss_pred EEEeCCCCCChhhHhh--------hhcccccCCCC----CCCCCCccchhHHHHHHHHHHcC
Q 001044 686 EVDDTGCGIDQSKWET--------VFESFEQGDPS----TTRKHGGTGLGLSIVRTLVNKMG 735 (1177)
Q Consensus 686 ~V~DtG~GI~~e~l~~--------IFe~F~q~d~s----~~~~~~GtGLGLaIvk~IVe~~G 735 (1177)
+|.|+|+|||++.+++ +|.+|+.+..- .....|+.|+||++|+.+++.+.
T Consensus 67 ~V~DnG~GIp~~~~~~~~~~~~e~if~~~~~~~kf~~~~~~~s~G~~G~Gls~v~als~~~~ 128 (390)
T 1kij_A 67 TVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSGGKFEQGAYKVSGGLHGVGASVVNALSEWTV 128 (390)
T ss_dssp EEEECSSCCCCSEETTTTEEHHHHHHHSSCEESGGGGSSCCCCSCSSTTSHHHHHHTEEEEE
T ss_pred EEEEcCCCCCHHHhhhccccchhhheeeeeecccccCccccccCCCCCcceeeecccccceE
Confidence 9999999999999987 99988876431 11134679999999999998654
No 139
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=98.22 E-value=2.6e-06 Score=97.45 Aligned_cols=88 Identities=17% Similarity=0.280 Sum_probs=64.7
Q ss_pred HHHHHHHHHHhhHhhccCCCeEEEEeeccccCCCCCCCcCCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeC
Q 001044 611 RVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDT 690 (1177)
Q Consensus 611 rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~Dt 690 (1177)
++.+++.|||+||+++.. ..|.|.+... + ...|+|.|+
T Consensus 24 ~~~~~v~ELi~NaidA~a-~~I~I~i~~~---------------------------------------~--~~~i~V~Dn 61 (333)
T 1b63_A 24 RPASVVKELVENSLDAGA-TRIDIDIERG---------------------------------------G--AKLIRIRDN 61 (333)
T ss_dssp SHHHHHHHHHHHHHHTTC-SEEEEEEEGG---------------------------------------G--TSEEEEEEC
T ss_pred CHHHHHHHHHHHHHHCCC-CeEEEEEEeC---------------------------------------C--ceEEEEEEc
Confidence 578999999999999974 4666554210 0 124899999
Q ss_pred CCCCChhhHhhhhcccccCCCCC------CCCCCccchhHHHHHHHHHHcCCEEEEEEeCC
Q 001044 691 GCGIDQSKWETVFESFEQGDPST------TRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNS 745 (1177)
Q Consensus 691 G~GI~~e~l~~IFe~F~q~d~s~------~~~~~GtGLGLaIvk~IVe~~GG~I~v~S~~g 745 (1177)
|+||++++++.+|++|++.+... ....|+.|+||+.+..+ +++.|.|...
T Consensus 62 G~Gi~~~~l~~~~~~~~tsK~~~~~d~~~~~~~G~~G~gl~si~~v-----s~l~v~s~~~ 117 (333)
T 1b63_A 62 GCGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSV-----SRLTLTSRTA 117 (333)
T ss_dssp SCCCCGGGHHHHHSTTCCSSCCSHHHHHTCCSSCCSSCHHHHHHTT-----SEEEEEEECT
T ss_pred CCCcCHHHHHHhhhcccccCccccchhhhccccCccccchhhhhcC-----CcEEEEEecC
Confidence 99999999999999998764211 12356799999987554 3688888764
No 140
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis} PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Probab=98.20 E-value=4.7e-06 Score=88.59 Aligned_cols=72 Identities=17% Similarity=0.266 Sum_probs=61.5
Q ss_pred CCccceeee-ecccCccceeeeccccCCCCCCCcEEEEEEeehhhhHHHHHHHHHHhhcCeEEEEECCcceEEEecCC
Q 001044 273 GVASWHVAV-SKFTNSPLLSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTN 349 (1177)
Q Consensus 273 ~~~~w~~~~-~~~~~~~~~~~~~pv~~~~~~~~~~~~v~gv~~~~~~i~~~l~~l~~~~~~~iyi~~~~G~ll~~s~~ 349 (1177)
|++.|+..+ +..++.+.++++.||++. +|+++||+++++.+..+.++++.+..+ |.+|++|.+|.+++++..
T Consensus 108 ~~~~is~~~~~~~~g~~~i~ia~pi~~~---~g~~~Gvl~~~i~l~~l~~~~~~~~~g--g~~~l~d~~G~ii~~~~~ 180 (217)
T 4dah_A 108 KKTVISDSYSSRITGQPIFTICVPVLDS---KRNVTDYLVAAIQIDYLKNLINLLSPD--VYIEVVNQDGKMIFASGQ 180 (217)
T ss_dssp CSCEECCCEECTTTCSEEEEEEEEEECT---TSCEEEEEEEEEEHHHHHHHHHHHCTT--SCEEEEETTSCEEEEESC
T ss_pred CCcEEeceEEcCCCCCEEEEEEEEEECC---CCCEEEEEEEEEcHHHHHHHHHhcCCC--cEEEEEcCCCCEEEeCCC
Confidence 566777544 456688999999999996 789999999999999999999988654 899999999999988765
No 141
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=98.10 E-value=6.1e-06 Score=95.38 Aligned_cols=87 Identities=18% Similarity=0.252 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhhHhhccCCCeEEEEeeccccCCCCCCCcCCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeC
Q 001044 611 RVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDT 690 (1177)
Q Consensus 611 rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~Dt 690 (1177)
++.+++.|||+||+++.. +.|.|.+... + ...|+|.|+
T Consensus 34 ~~~~vl~eLv~NAiDA~a-~~I~I~i~~~---------------------------------------~--~~~I~V~Dn 71 (365)
T 1h7s_A 34 SLSTAVKELVENSLDAGA-TNIDLKLKDY---------------------------------------G--VDLIEVSDN 71 (365)
T ss_dssp CHHHHHHHHHHHHHHTTC-SEEEEEEEGG---------------------------------------G--TSEEEEEEC
T ss_pred hHHHHHHHHHHHHHHCCC-CEEEEEEEeC---------------------------------------C--cEEEEEEEC
Confidence 468999999999999863 4566554210 0 135899999
Q ss_pred CCCCChhhHhhhhcccccCCCCCC-----CCCCcc-chhHHHHHHHHHHcCCEEEEEEeC
Q 001044 691 GCGIDQSKWETVFESFEQGDPSTT-----RKHGGT-GLGLSIVRTLVNKMGGEIKVVKKN 744 (1177)
Q Consensus 691 G~GI~~e~l~~IFe~F~q~d~s~~-----~~~~Gt-GLGLaIvk~IVe~~GG~I~v~S~~ 744 (1177)
|+||++++++++|++|++.+.... ....|. |+||+.+..+ . ++.|.|..
T Consensus 72 G~Gi~~~~l~~~f~~~~tsK~~~~~dl~~i~s~G~rG~gl~si~~v----s-~v~v~t~~ 126 (365)
T 1h7s_A 72 GCGVEEENFEGLTLKHHTSKIQEFADLTQVETFGFRGEALSSLCAL----S-DVTISTCH 126 (365)
T ss_dssp SCCCCGGGSGGGGC----------CCTTCSEEESSSSSHHHHHHHH----S-EEEEEEEC
T ss_pred CCCcCHHHHHHHhhhccccccccccchhcccccCCCCchhhhhhhh----c-cEEEEEcc
Confidence 999999999999999997643211 011244 9999987665 2 77887765
No 142
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=98.04 E-value=2.2e-05 Score=73.64 Aligned_cols=59 Identities=20% Similarity=0.265 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001044 491 SNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLS 555 (1177)
Q Consensus 491 ~~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndLLdlS 555 (1177)
..+.+.+|++++||||||||++|.++++.+.++ .......|..++.+|..+++++|+|.
T Consensus 56 ~~~~~~~~~~~~shel~tpl~~i~~~~e~l~~~------~~~~~~~i~~~~~~l~~~i~~ll~~~ 114 (114)
T 3zcc_A 56 LADDGTLLMAGVSHDLRTPLTRIRLATEMMSEQ------DGYLAESINKDIEECNAIIEQFIDYL 114 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGG------GHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhHHHcChHHHHHHHHHHHHHh------hhHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 344567899999999999999999999987532 22345789999999999999999873
No 143
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=98.03 E-value=1.3e-05 Score=91.59 Aligned_cols=88 Identities=18% Similarity=0.268 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhhHhhccCCCeEEEEeeccccCCCCCCCcCCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeC
Q 001044 611 RVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDT 690 (1177)
Q Consensus 611 rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~Dt 690 (1177)
++.+++.|||+||+++. .+.|.|.+.. ++ ...|+|.|+
T Consensus 28 ~~~~vv~eLv~NAidA~-a~~I~I~i~~---------------------------------------~~--~~~I~V~Dn 65 (348)
T 3na3_A 28 RPANAIKEMIENCLDAK-STSIQVIVKE---------------------------------------GG--LKLIQIQDN 65 (348)
T ss_dssp SHHHHHHHHHHHHHHTT-CSEEEEEEEG---------------------------------------GG--TSEEEEEEC
T ss_pred CHHHHHHHHHHHHHHcC-CCEEEEEEEe---------------------------------------CC--EEEEEEEEC
Confidence 56799999999999994 3456655321 00 134899999
Q ss_pred CCCCChhhHhhhhcccccCCCCCC------CCCCccchhHHHHHHHHHHcCCEEEEEEeCC
Q 001044 691 GCGIDQSKWETVFESFEQGDPSTT------RKHGGTGLGLSIVRTLVNKMGGEIKVVKKNS 745 (1177)
Q Consensus 691 G~GI~~e~l~~IFe~F~q~d~s~~------~~~~GtGLGLaIvk~IVe~~GG~I~v~S~~g 745 (1177)
|+||++++++.+|++|+..+.... ...|-.|.||+-+-.+. ++.|.|...
T Consensus 66 G~GI~~~~l~~~~~~~~tsK~~~~~dl~~i~s~GfrGeaL~Si~avs-----~l~v~sr~~ 121 (348)
T 3na3_A 66 GTGIRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVA-----HVTITTKTA 121 (348)
T ss_dssp SCCCCGGGGGTTTSTTCCSSCCCC---------CCTTCHHHHHHHSS-----EEEEEEECT
T ss_pred CcCcChHHhhhhhccccccccCcchhhhccccCCcCChHHHHhhccc-----EEEEEEEEC
Confidence 999999999999999998654321 12244588887655443 688888764
No 144
>3lif_A Putative diguanylate cyclase (ggdef) with PAS/PAC; PDC fold, signaling protein; HET: CIT; 2.70A {Rhodopseudomonas palustris}
Probab=98.01 E-value=6.2e-06 Score=89.67 Aligned_cols=75 Identities=16% Similarity=0.095 Sum_probs=64.5
Q ss_pred CCCccceeee-ecccCccceeeeccccCCCCCCCcEEEEEEeehhhhHHHHHHHHHHhhcCeEEEEECCcceEEEecCC
Q 001044 272 DGVASWHVAV-SKFTNSPLLSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTN 349 (1177)
Q Consensus 272 ~~~~~w~~~~-~~~~~~~~~~~~~pv~~~~~~~~~~~~v~gv~~~~~~i~~~l~~l~~~~~~~iyi~~~~G~ll~~s~~ 349 (1177)
.+++.|+..+ +..++.++++++.||++. +|+++||+++.+.+..+.++++.+..+.+|.+|++|.+|.+++++.+
T Consensus 109 ~~~~~is~p~~~~~~g~~~i~~~~pi~~~---~g~~~Gvl~~~i~l~~l~~~~~~~~~~~~g~~~l~d~~G~ii~~~p~ 184 (254)
T 3lif_A 109 DHTLLITGPIQSRTSGVWVFVVSRRLETT---DGKFFGVVVATIESEYFSTFYKTFDLGPGGSISLLHSDGRLLIQWPS 184 (254)
T ss_dssp CCCCEEEEEEECTTTCCEEEEEEEEEECT---TCCEEEEEEEEECHHHHHHHHTTSCCCTTCEEEEEETTSBEEEEETT
T ss_pred CCCeEECCceecCCCCcEEEEEEeeeeCC---CCCEeEEEEEEECHHHHHHHHHhcCcCCCcEEEEEeCCCcEEEECCC
Confidence 3566777554 445688999999999996 78999999999999999999999888899999999999999998554
No 145
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=97.99 E-value=4.5e-06 Score=97.96 Aligned_cols=90 Identities=22% Similarity=0.289 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHhhHhhcc----CCCeEEEEeeccccCCCCCCCcCCcccccccchhhhhhhhhhcccccccCCCceEE
Q 001044 608 DPGRVFQIFSNLINNSIKFT----SSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLAL 683 (1177)
Q Consensus 608 D~~rL~QIL~NLL~NAIKfT----~~G~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 683 (1177)
+...+..++.+|+.||++|+ ..|.|.|++... ....+
T Consensus 294 ~~~~~~l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~---------------------------------------~~~~l 334 (399)
T 3ke6_A 294 DIADIVHAISEFVENAVEHGYATDVSKGIVVAAALA---------------------------------------GDGNV 334 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHBCCSCCTTCEEEEEEEC---------------------------------------TTSEE
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEc---------------------------------------CCCEE
Confidence 34678999999999999998 357777765321 01247
Q ss_pred EEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCccchhHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCC
Q 001044 684 CFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA 758 (1177)
Q Consensus 684 ~i~V~DtG~GI~~e~l~~IFe~F~q~d~s~~~~~~GtGLGLaIvk~IVe~~GG~I~v~S~~g~GT~f~~~Lpl~~ 758 (1177)
.++|.|+|+|+|+. + ..++.|+||.|++++++.++ +.+. +.|+++++.+++..
T Consensus 335 ~i~V~D~G~g~~~~------------~-----~~~~~G~GL~lv~~l~~~~~----~~~~-~~G~~v~~~~~~~~ 387 (399)
T 3ke6_A 335 RASVIDRGQWKDHR------------D-----GARGRGRGLAMAEALVSEAR----IMHG-AGGTTATLTHRLSR 387 (399)
T ss_dssp EEEEEESCBC-----------------------------CHHHHHTTSSEEE----EEEE-TTEEEEEEEEECEE
T ss_pred EEEEEECCCCCCCC------------C-----CCCCCCcHHHHHHHHHHhee----eEEC-CCcEEEEEEEEcCC
Confidence 89999999999876 1 12467999999999998554 5444 67999999998854
No 146
>3lib_A Hypothetical sensory transduction histidine kinas; PDC fold, signaling protein; 2.99A {Methanosarcina mazei}
Probab=97.83 E-value=2.1e-05 Score=87.28 Aligned_cols=73 Identities=15% Similarity=0.249 Sum_probs=63.7
Q ss_pred CCCccceeeeecccCccceeeeccccCCCCCCCcEEEEEEeehhhhHHHHHHHHHHhhcCeEEEEECCcceEEEecCC
Q 001044 272 DGVASWHVAVSKFTNSPLLSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTN 349 (1177)
Q Consensus 272 ~~~~~w~~~~~~~~~~~~~~~~~pv~~~~~~~~~~~~v~gv~~~~~~i~~~l~~l~~~~~~~iyi~~~~G~ll~~s~~ 349 (1177)
.+++.|+..+.. ++.++++++.||++ +|+++||++++..+..+.++++.+..+.+|.+|+.|.+|.+++++..
T Consensus 133 ~~~~~~s~p~~~-~~~~~i~~~~pi~~----~g~~~Gvl~~~i~l~~l~~~~~~~~~~~~g~~~l~d~~G~ii~~~~~ 205 (290)
T 3lib_A 133 TEKDVLTEPYFY-EGVFMVSYVSPIMK----EGEFAGIGGVDVSLEYVDEVVSKVRTFDTGYAFMVSNSGVILSHPTH 205 (290)
T ss_dssp HCSCEECCCEEE-TTEEEEEEEEEEEE----TTEEEEEEEEEEEHHHHHHHHHHCCBTTTBCEEEECTTCBBCCCSSC
T ss_pred cCCCEEEcCEEe-CCeEEEEEEEEEEE----CCEEEEEEEEEEeHHHHHHHHHhCCcCCceEEEEEeCCCeEEEcCCc
Confidence 367788877654 68899999999995 68899999999999999999999888889999999999999987653
No 147
>3li9_A Hypothetical sensory transduction histidine kinas; PDC fold, signaling protein; HET: BTB; 1.70A {Methanosarcina mazei} PDB: 3li8_A* 3lia_A*
Probab=97.82 E-value=1.1e-05 Score=89.59 Aligned_cols=73 Identities=18% Similarity=0.315 Sum_probs=63.5
Q ss_pred CCCccceeeeecccCccceeeeccccCCCCCCCcEEEEEEeehhhhHHHHHHHHHHhhcCeEEEEECCcceEEEecCC
Q 001044 272 DGVASWHVAVSKFTNSPLLSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTN 349 (1177)
Q Consensus 272 ~~~~~w~~~~~~~~~~~~~~~~~pv~~~~~~~~~~~~v~gv~~~~~~i~~~l~~l~~~~~~~iyi~~~~G~ll~~s~~ 349 (1177)
.+++.|+..+.. ++.++++++.||++ +|+++||++++..+..+.++++.+..+.+|.+|+.|.+|.+++++..
T Consensus 134 ~~~~~~s~p~~~-~~~~~i~~~~pi~~----~g~~~Gvl~~~i~l~~l~~~~~~~~~~~~g~~~l~d~~G~ii~~~~~ 206 (291)
T 3li9_A 134 TGKDTLTEPYFY-EGIFMVSYDSPIFK----NGEFAGIAGVDVPLEYVDDVASSIRTFDTGYAFMVSNTGIFLSHPTQ 206 (291)
T ss_dssp HCSCEECCCEEE-TTEEEEEEEEEEEE----TTEEEEEEEEEEECHHHHHHHTTCCBTTTBEEEEECTTCBBSCCSSC
T ss_pred hCCCEEEccEEe-CCEEEEEEEEEEEE----CCEEEEEEEEEeeHHHHHHHHHhCCcCCCeEEEEEeCCCeEEEcCCh
Confidence 377889877654 68899999999996 68899999999999999999988888889999999999999987653
No 148
>3lic_A Sensor protein; PDC fold, ATP-binding, kinase, nucleotide-binding, phosphopr transferase, transmembrane; 2.30A {Shewanella oneidensis}
Probab=97.72 E-value=6.5e-05 Score=82.22 Aligned_cols=71 Identities=15% Similarity=0.196 Sum_probs=58.0
Q ss_pred CCCCccceeeeecc-cC-ccceeeeccccCCCCCCCcEEEEEEeehhhhHHHHHHHHHHhhcCeEEEEECCcceEEEecC
Q 001044 271 PDGVASWHVAVSKF-TN-SPLLSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATST 348 (1177)
Q Consensus 271 ~~~~~~w~~~~~~~-~~-~~~~~~~~pv~~~~~~~~~~~~v~gv~~~~~~i~~~l~~l~~~~~~~iyi~~~~G~ll~~s~ 348 (1177)
..+++.|+..+... ++ .++++++.||++ +|+++||+++++.+..+.+++. + .+|.+|++|.+|.+++++.
T Consensus 126 ~~~~~~~s~~~~~~~~~~~~~i~~~~pi~~----~g~~~Gv~~~~i~l~~l~~~~~-~---~~g~~~l~d~~G~ii~~~~ 197 (274)
T 3lic_A 126 NQVGGYWSKAYFDEGAGNVLMITYAVPFGV----QPDYFGVTTVDLALDRLPEQLG-I---APSRLVVLDDQGRLIFHSD 197 (274)
T ss_dssp TTSSCEECCCEECTTTTCSEEEEEEEEESC----TTCCCEEEEEEEEGGGHHHHHT-S---CGGGEEEECTTSCEEECSS
T ss_pred hcCCCEEEeeEEcCCCCceEEEEEEEEEcc----CCEEEEEEEEEEEHHHHHHHhc-c---CCceEEEECCCCCEEEeCC
Confidence 34677888655433 34 589999999997 5789999999999999999988 6 7788999999999998765
Q ss_pred C
Q 001044 349 N 349 (1177)
Q Consensus 349 ~ 349 (1177)
.
T Consensus 198 ~ 198 (274)
T 3lic_A 198 K 198 (274)
T ss_dssp H
T ss_pred H
Confidence 3
No 149
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=97.67 E-value=0.00046 Score=73.56 Aligned_cols=71 Identities=20% Similarity=0.222 Sum_probs=58.8
Q ss_pred CccEEEEeC-CCCCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEE------ECCCCHHHHHHH
Q 001044 1088 RFDLILMDC-QMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL------TKPIDSERMVST 1160 (1177)
Q Consensus 1088 ~~DLIlmDi-~MP~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL------~KP~~~~~L~~~ 1160 (1177)
..+++++++ .++.|+|++ ++.|++.... .++|||++++.++.++..+|+++|||+++ .+|++.+++...
T Consensus 144 ~~~vli~~~~~~g~~~g~~-~~~i~~~~~~---~~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~~~~~~~~~~~~~ 219 (237)
T 3cwo_X 144 AGEILLTSIDRDGTKSGYD-TEMIRFVRPL---TTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDVRELKEY 219 (237)
T ss_dssp CSEEEEEETTTTTCCSCCC-HHHHHHHGGG---CCSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHHTTSSCHHHHHHH
T ss_pred CCeEEEEecCCCCcccccc-HHHHHHHHHh---cCCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHHcCCCCHHHHHHH
Confidence 467999997 889899976 5566654332 36999999999999999999999999995 899999998876
Q ss_pred HH
Q 001044 1161 IL 1162 (1177)
Q Consensus 1161 I~ 1162 (1177)
+.
T Consensus 220 l~ 221 (237)
T 3cwo_X 220 LK 221 (237)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 150
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=97.62 E-value=8.4e-05 Score=85.68 Aligned_cols=88 Identities=23% Similarity=0.223 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhhHhhccCCCeEEEEeeccccCCCCCCCcCCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeC
Q 001044 611 RVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDT 690 (1177)
Q Consensus 611 rL~QIL~NLL~NAIKfT~~G~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~Dt 690 (1177)
++.+++.|||+||+++. ...|.|.+.. ++ ...|+|.|+
T Consensus 25 ~~~~vv~eLv~NaiDA~-a~~I~I~i~~---------------------------------------~~--~~~i~V~Dn 62 (367)
T 3h4l_A 25 DLTTAVKELVDNSIDAN-ANQIEIIFKD---------------------------------------YG--LESIECSDN 62 (367)
T ss_dssp SHHHHHHHHHHHHHHTT-CSEEEEEEET---------------------------------------TT--TSEEEEEEC
T ss_pred CHHHHHHHHHHHHHHCC-CCEEEEEEEe---------------------------------------CC--EEEEEEEEC
Confidence 46799999999999986 3456654310 11 135899999
Q ss_pred CCCCChhhHhhhhcccccCCCCCC------CCCCccchhHHHHHHHHHHcCCEEEEEEeCC
Q 001044 691 GCGIDQSKWETVFESFEQGDPSTT------RKHGGTGLGLSIVRTLVNKMGGEIKVVKKNS 745 (1177)
Q Consensus 691 G~GI~~e~l~~IFe~F~q~d~s~~------~~~~GtGLGLaIvk~IVe~~GG~I~v~S~~g 745 (1177)
|+||++++++.+|++|+..+.... ...|-.|.||+-+-.+ +++.|.|...
T Consensus 63 G~Gi~~~~l~~~~~~~~tsK~~~~~Dl~~i~t~GfrGeaL~Si~av-----S~l~V~sr~~ 118 (367)
T 3h4l_A 63 GDGIDPSNYEFLALKHYTSKIAKFQDVAKVQTLGFRGEALSSLCGI-----AKLSVITTTS 118 (367)
T ss_dssp SCCCCGGGTTTTTCCEEC---------CCCCEEEETTHHHHHHHHS-----SEEEEEEESS
T ss_pred CCCcChhHhccceeccccCcCCchhhhhhhhccCccchHHHHhhcc-----CEEEEEEEEC
Confidence 999999999999999996543211 1112237788765444 2688888753
No 151
>3c8c_A Methyl-accepting chemotaxis protein; structural genomics, unknown function, uncharacterized protein; 1.50A {Vibrio cholerae o1 biovar eltor str}
Probab=97.45 E-value=0.00021 Score=75.94 Aligned_cols=74 Identities=19% Similarity=0.317 Sum_probs=60.3
Q ss_pred CCccceeeee-cccCccceeeeccccCCCCCCCcEEEEEEeehhhhHHHHHHHHHHhhcCeEEEEECCcceEEEecC
Q 001044 273 GVASWHVAVS-KFTNSPLLSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATST 348 (1177)
Q Consensus 273 ~~~~w~~~~~-~~~~~~~~~~~~pv~~~~~~~~~~~~v~gv~~~~~~i~~~l~~l~~~~~~~iyi~~~~G~ll~~s~ 348 (1177)
+++.|+..+. ..++.++++++.||++. .+|+++||+++...+..+.++++.+..+.+|.+|+.|.+|.+++++.
T Consensus 102 ~~~~~s~~~~~~~~~~~~i~~~~pi~~~--~~g~~~Gvl~~~i~~~~l~~~~~~~~~~~~g~~~l~d~~G~ii~~~~ 176 (240)
T 3c8c_A 102 GKLVITAPYADSASGEILVSVATPVKDS--ATGQFLGSIFYDVSLAELAELVNEVKLFDAGYVFIVSEDGTTIAHPK 176 (240)
T ss_dssp TSCEECCCEECTTTCCEEEEEEEEEECT--TTCCEEEEEEEEECHHHHHHHHTCSCCTTSEEEEEEETTSBEEECSS
T ss_pred CCcEEeeceEcCCCCeEEEEEEEEEEEC--CCCeEEEEEEEEEEHHHHHHHHHhcccCCceEEEEEcCCCcEEEeCC
Confidence 4566765543 34567899999999984 22889999999999999999988877778899999999999998764
No 152
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=97.35 E-value=0.00086 Score=70.41 Aligned_cols=140 Identities=14% Similarity=0.175 Sum_probs=71.2
Q ss_pred HHHHHhHHhhhhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeccHHHHHH
Q 001044 497 QFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELE 576 (1177)
Q Consensus 497 ~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSkiEsg~l~l~~~~~dL~~li~ 576 (1177)
+.+....||..+=|..|.|++++ . -.++..+++..+........ .++++.. ..+.
T Consensus 23 ~~LR~qrHdf~NkLqvI~GLlql-~----~ydea~~yI~~~~~~~q~~~-------~~~~i~~-------------P~la 77 (192)
T 1ixm_A 23 HLLGHSRHDWMNKLQLIKGNLSL-Q----KYDRVFEMIEEMVIDAKHES-------KLSNLKT-------------PHLA 77 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-T----CHHHHHHHHHHHHHHHHHHH-------HHHTTTC-------------HHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHc-C----CHHHHHHHHHHHHHHHHHHH-------HHHhCCC-------------HHHH
Confidence 45777899999999999999996 2 12445555555444433322 1333321 1233
Q ss_pred HHHHHHHHHHhcCCcEE-EEEcCCCCCceEEeCHHHHHHHHHHHHhhHhhcc-------CCCeEEEEeeccccCCCCCCC
Q 001044 577 ELVDMFSVQCSNHNVET-VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFT-------SSGHIIIRGWCENLDTSKNTA 648 (1177)
Q Consensus 577 ~vv~~~~~~a~~k~I~l-~~~i~~~~p~~V~gD~~rL~QIL~NLL~NAIKfT-------~~G~v~v~~~~~~~~~~~~~~ 648 (1177)
.++-.....+.+.++++ .++....++ ..+..+ .||++||+... ..+.|.+.....
T Consensus 78 ~lLl~K~~~a~e~~i~lev~~~~s~l~----~~~~~l----gnLi~na~~Ai~~~~~~~~~~~I~i~i~~~--------- 140 (192)
T 1ixm_A 78 FDFLTFNWKTHYMTLEYEVLGEIKDLS----AYDQKL----AKLMRKLFHLFDQAVSRESENHLTVSLQTD--------- 140 (192)
T ss_dssp HHHHHGGGSCCSSEEEEEEESSCCCCT----TTHHHH----HHHHHHHHHHHHHHBCTTSCCEEEEEEECC---------
T ss_pred HHHHHHHHHhccCCeEEEEecCccccC----CCcHHH----HHHHHHHHHHHHhhhccCCCCeEEEEEEEe---------
Confidence 33332233344444444 222222222 233344 44554444332 345666554210
Q ss_pred cCCcccccccchhhhhhhhhhcccccccCCCceEEEEEEEeCCCCCChhhHhhhhcccc
Q 001044 649 EFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFE 707 (1177)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~l~~IFe~F~ 707 (1177)
.+...+.|+|.|+|+||+++.++++|+..|
T Consensus 141 -----------------------------~~~~~l~i~V~d~G~~i~~e~~~~if~~~~ 170 (192)
T 1ixm_A 141 -----------------------------HPDRQLILYLDFHGAFADPSAFDDIRQNGY 170 (192)
T ss_dssp -----------------------------CSSSSCEEEEEEESCBSCGGGCC-------
T ss_pred -----------------------------cCCCEEEEEEEeCCCCCCHHHHHHHHhCCC
Confidence 001236789999999999999999998655
No 153
>3e4o_A C4-dicarboxylate transport sensor protein DCTB; PAS domain, N-TERM helical dimerization domain, transferase; 2.30A {Sinorhizobium meliloti} PDB: 3e4p_A 3e4q_A 2zbb_A
Probab=97.31 E-value=0.0006 Score=76.91 Aligned_cols=61 Identities=18% Similarity=0.176 Sum_probs=51.3
Q ss_pred ecccCccceeeeccccCCCCCCCcEEEEEEeehhhhHHHHHHHHHHhhcCeEEEEECCcceEEEecCCC
Q 001044 282 SKFTNSPLLSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNA 350 (1177)
Q Consensus 282 ~~~~~~~~~~~~~pv~~~~~~~~~~~~v~gv~~~~~~i~~~l~~l~~~~~~~iyi~~~~G~ll~~s~~~ 350 (1177)
+..++.|.+.++.||++ +|+++||+++...+..+.+.+. +.++.+|++|.+|.+++++..+
T Consensus 163 ~~~tg~~~i~~a~PV~~----~G~viGVv~v~i~l~~l~~~~~----~~~g~~~l~D~~G~ii~~~~~~ 223 (305)
T 3e4o_A 163 GTVSKRPGLYISRRVDG----PGGPLGVIVAKLEFDGVEADWQ----ASGKPAYVTDRRGIVLITSLPS 223 (305)
T ss_dssp CTTTCCEEEEEEEEEEE----TTEEEEEEEEEECCHHHHHHHH----HHTSCEEEECTTCBEEEESSGG
T ss_pred ecCCCCEEEEEEEEEcc----CCeEEEEEEEEEcHHHHHHHHh----cCCceEEEEcCCCeEEEeCChh
Confidence 45567889999999987 4889999999999988888764 3688999999999999886654
No 154
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=97.26 E-value=0.001 Score=61.96 Aligned_cols=57 Identities=21% Similarity=0.313 Sum_probs=47.7
Q ss_pred HHHHHHHHhHHhhhhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001044 494 YKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSK 556 (1177)
Q Consensus 494 ~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndLLdlSk 556 (1177)
.+.+|++.+|||||||++.|.+.++.+... ..+....+...+.+|..++++++++++
T Consensus 59 ~~~~~~~~~shel~~~l~~i~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~ 115 (115)
T 3zrx_A 59 DRTLLMAGVSHDLRTPLTRIRLATEMMSEQ------DGYLAESINKDIEECNAIIEQFIDYLR 115 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCGG------GHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhh------hHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 366899999999999999999999987532 134567789999999999999998764
No 155
>3lid_A Putative sensory BOX/ggdef family protein; PDC fold, signaling protein; 1.76A {Vibrio parahaemolyticus} PDB: 3lie_A 2p7j_A*
Probab=97.25 E-value=0.0012 Score=73.87 Aligned_cols=137 Identities=13% Similarity=0.197 Sum_probs=87.0
Q ss_pred HHHh-hcccccceEEEEeecceeEE-eeccCCCCceEEEEecCCCcccCCCCCCCCCccccccCCCCCCccCCcceeeee
Q 001044 162 WAMF-ASRKALNAITINYKNGFVQA-FHRDHRSNNTFYIYSDLSNYSIGTSGPYDSNLISSREGWNDQSIKGNISAIWYR 239 (1177)
Q Consensus 162 ~~~~-~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wy~ 239 (1177)
|..| .+.|.+.+|.+...+|...+ .+++ +.+. ++... .....-...+||+
T Consensus 69 ~~~~~~~~~~~~~i~lid~~G~~i~~~~~~--~~~~-~~~p~-------------------------~~l~n~~~R~yf~ 120 (295)
T 3lid_A 69 WSSVARNQKLYKQIRFLDTSGTEKVRIKYD--FKTS-IAGPS-------------------------LILRDKSAREYFK 120 (295)
T ss_dssp HHHHHHHHCCEEEEEEEETTSBEEEEEEEE--TTTT-EEEEC-------------------------SCCCBCTTSHHHH
T ss_pred HHHHHhcCccccEEEEECCCCCEEEEEEcc--CCce-eEcCc-------------------------cccccchhhHHHH
Confidence 3434 46799999999999997654 5555 2222 22221 0011112578999
Q ss_pred cccCCcccccccccCCCCCCCcccccccccCCCCCccceeeeecccCccceeeeccccCCCCCCCcEEEEEEeehhhhHH
Q 001044 240 EPLDPITGEKIGKASPIPPDDLINIAGISQVPDGVASWHVAVSKFTNSPLLSAALPVWDPTTSNKSIVAVVGVTTALSSV 319 (1177)
Q Consensus 240 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~pv~~~~~~~~~~~~v~gv~~~~~~i 319 (1177)
+++.-..|+.+..+.... ...|+ + -..+.|+++++.||++ +|+++||+++...+..+
T Consensus 121 ~a~~~~~~~~~~s~~~~~------------~~~g~-----~--~~~~~p~i~~a~pV~~----~g~~~GVlv~~i~l~~l 177 (295)
T 3lid_A 121 YAQSLDNEQISAWGIELE------------RDKGE-----L--VYPLSPSLRILMPISV----NDVRQGYLVLNVDIEYL 177 (295)
T ss_dssp HHHHSCTTCCEECCCEEC------------EETTE-----E--CSSCCEEEEEEEEEEE----TTEEEEEEEEEEEHHHH
T ss_pred HHhcCCCCcEEEeCceec------------ccCCc-----c--cCCCCCEEEEEEEEcc----CCeEEEEEEEEecHHHH
Confidence 997544444433321110 01111 0 0235789999999974 78899999999888777
Q ss_pred HHHHHHHHhhcCeEEEEECCcceEEEecCCC
Q 001044 320 GQLMKELVEVHSGHIYLTSQEGYLLATSTNA 350 (1177)
Q Consensus 320 ~~~l~~l~~~~~~~iyi~~~~G~ll~~s~~~ 350 (1177)
.+.++ ...+.++.+|++|.+|.+++++...
T Consensus 178 ~~~~~-~~~~~~~~~~l~d~~G~~l~~~~~~ 207 (295)
T 3lid_A 178 SSLLN-YSPVRDFHIELVKHKGFYIASPDES 207 (295)
T ss_dssp HHHHS-EETTTTEECEEEETTSBEEECSCGG
T ss_pred HHHHh-hcccCCCcEEEEcCCCCEEecCCcc
Confidence 77664 3445689999999999999987543
No 156
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=97.12 E-value=0.00023 Score=76.55 Aligned_cols=57 Identities=16% Similarity=0.360 Sum_probs=35.7
Q ss_pred EEEEEeCCCCCChhhHhhhhcccccCC----------CCCCCCCCccchhHHHHHHHHHHcCCEEEEEEeC
Q 001044 684 CFEVDDTGCGIDQSKWETVFESFEQGD----------PSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKN 744 (1177)
Q Consensus 684 ~i~V~DtG~GI~~e~l~~IFe~F~q~d----------~s~~~~~~GtGLGLaIvk~IVe~~GG~I~v~S~~ 744 (1177)
.|.|.|||+||+++++...|..+.... .......|..|+|+.-+..+ +-++.|.|..
T Consensus 74 ~i~I~DnG~GMs~edl~~~l~~ia~S~~~~f~~k~~~~~~~~~iG~fGiG~~s~~~~----~~~v~v~S~~ 140 (220)
T 2wer_A 74 VLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFLV----ADRVQVISKS 140 (220)
T ss_dssp EEEEEECSCCCCHHHHHHHTTTSCCTTHHHHHHHHTTTCCGGGGGGGTCGGGGGGGT----EEEEEEEEEC
T ss_pred EEEEEEcCCCCCHHHHHHHHHhHhcccchhHHHHhhccCCcccCCccchhHHHhhhc----CCeeEEEEec
Confidence 478999999999999988776554321 01112235579998655333 3345555553
No 157
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=97.04 E-value=0.00087 Score=73.19 Aligned_cols=98 Identities=14% Similarity=0.134 Sum_probs=74.3
Q ss_pred ccCCcEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCC
Q 001044 1018 ILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ 1097 (1177)
Q Consensus 1018 ~~~g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~ 1097 (1177)
.+.|.+||||||++.++..++.+|+..|++|..+.+. ...+||+|++|..
T Consensus 8 ~l~~~~vlvv~d~~~~~~~l~~~L~~~g~~v~~~~~~------------------------------~~~~~~~ii~d~~ 57 (254)
T 2ayx_A 8 GLSGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEGQ------------------------------EPTPEDVLITDEV 57 (254)
T ss_dssp TTTTEEEEEECCCHHHHHHHHHHHTTTTEEEEECSSC------------------------------CCCTTCEEEEESS
T ss_pred ccCCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEecCC------------------------------CCCcCcEEEEcCC
Confidence 4678999999999999999999999999999887641 1246999999999
Q ss_pred CCCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001044 1098 MPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1166 (1177)
Q Consensus 1098 MP~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~ 1166 (1177)
||..++. ..++.++....... .+.+...++.||+...++...+.+++.
T Consensus 58 ~~~~~~~-----------------~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~l~~~~~ 105 (254)
T 2ayx_A 58 VSKKWQG-----------------RAVVTFCRRHIGIP----LEKAPGEWVHSVAAPHELPALLARIYL 105 (254)
T ss_dssp CSCCCCS-----------------SEEEEECSSCCCSC----CTTSTTEEEECSSCCSHHHHHHHHHHT
T ss_pred Ccccccc-----------------ceEEEEecccCCCc----ccccCCceeccccchHHHHHHHHHHhh
Confidence 9986431 12555555432110 134556899999999999998888764
No 158
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=96.67 E-value=0.0024 Score=74.34 Aligned_cols=49 Identities=29% Similarity=0.480 Sum_probs=36.8
Q ss_pred EEEEEeCCCCCChhh--------HhhhhcccccCCC---CCCCCCCc-cchhHHHHHHHHH
Q 001044 684 CFEVDDTGCGIDQSK--------WETVFESFEQGDP---STTRKHGG-TGLGLSIVRTLVN 732 (1177)
Q Consensus 684 ~i~V~DtG~GI~~e~--------l~~IFe~F~q~d~---s~~~~~~G-tGLGLaIvk~IVe 732 (1177)
.|+|.|+|+|||.+. ++.+|.+++.+.. ......+| .|.||+.|..+.+
T Consensus 64 ~I~V~DnG~GIp~~~~~~~~~~~~e~v~~~lhagsKf~~~~~~~sgGl~GvGls~vnalS~ 124 (390)
T 1s16_A 64 SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSK 124 (390)
T ss_dssp CEEEEECSSCCCCSBCTTTCSBHHHHHHHCTTEESCSSSSSCSSCSCCSSCHHHHHHHTEE
T ss_pred EEEEEECCCCcCcccccccCcchhhheeeeecccCCcCCCcccccCCccccchHHHHHhhc
Confidence 389999999999998 7889998776532 11122344 8999999998875
No 159
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=96.61 E-value=0.00044 Score=76.34 Aligned_cols=57 Identities=21% Similarity=0.337 Sum_probs=34.4
Q ss_pred EEEEEeCCCCCChhhHhhhhcccccCC---------C------CCCCCCCccchhHHHHHHHHHHcCCEEEEEEeC
Q 001044 684 CFEVDDTGCGIDQSKWETVFESFEQGD---------P------STTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKN 744 (1177)
Q Consensus 684 ~i~V~DtG~GI~~e~l~~IFe~F~q~d---------~------s~~~~~~GtGLGLaIvk~IVe~~GG~I~v~S~~ 744 (1177)
.|+|.|||+||+++++...|..+.+.. . ......|..|+|+.-+..++ .++.|.|..
T Consensus 76 ~l~I~DnGiGMt~edl~~~l~tia~Sgtk~F~~kl~~~~~~~~~d~~~IG~fGvGfySaf~va----~~v~V~Sk~ 147 (269)
T 1qy5_A 76 LLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVA----DKVIVTSKH 147 (269)
T ss_dssp EEEEEECSCCCCHHHHHHHHHSCCSHHHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGGGGTE----EEEEEEEEC
T ss_pred EEEEEECCCCCCHHHHHHHhhhhcccccHHHHHhhhhcccccccchhhcCCccccHHHHhhcc----ceEEEEEEe
Confidence 478999999999999876664432110 0 01112256899998765544 344554443
No 160
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=96.52 E-value=0.0035 Score=68.96 Aligned_cols=57 Identities=16% Similarity=0.318 Sum_probs=37.2
Q ss_pred EEEEEeCCCCCChhhHhhhhcccccCCC----------CCCCCCCccchhHHHHHHHHHHcCCEEEEEEeC
Q 001044 684 CFEVDDTGCGIDQSKWETVFESFEQGDP----------STTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKN 744 (1177)
Q Consensus 684 ~i~V~DtG~GI~~e~l~~IFe~F~q~d~----------s~~~~~~GtGLGLaIvk~IVe~~GG~I~v~S~~ 744 (1177)
.|.|.|||+||+++++...|.++..... ......|..|+|+.-+-.++ -++.|.|..
T Consensus 116 ~I~I~DnG~GMs~edL~~~l~~ia~S~~~~f~~~l~~~~d~~~iG~fGiGf~S~f~va----~~v~V~Sr~ 182 (264)
T 1yc1_A 116 TLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVA----EKVTVITKH 182 (264)
T ss_dssp EEEEEECSCCCCHHHHHHHHHSCTTSCHHHHHHHHHTTCCGGGGGGGTCGGGGHHHHE----EEEEEEEEC
T ss_pred EEEEEECCcCCCHHHHHHHHHhhccccchhhhhhhccccchhhcCCCCCCccccccCC----CEEEEEEec
Confidence 4789999999999999877765542210 11123356799998665543 456666654
No 161
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=96.45 E-value=0.001 Score=72.22 Aligned_cols=57 Identities=12% Similarity=0.295 Sum_probs=36.2
Q ss_pred EEEEEeCCCCCChhhHhhhhcccccCCCC------------CCCCCCccchhHHHHHHHHHHcCCEEEEEEeC
Q 001044 684 CFEVDDTGCGIDQSKWETVFESFEQGDPS------------TTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKN 744 (1177)
Q Consensus 684 ~i~V~DtG~GI~~e~l~~IFe~F~q~d~s------------~~~~~~GtGLGLaIvk~IVe~~GG~I~v~S~~ 744 (1177)
.|.|.|||+||+++++...|.++.+.... .....|..|+||.-+-.+ +-++.|.|..
T Consensus 95 ~i~I~DnG~GMs~edl~~~~~~ia~S~~~~f~~~l~~~~~~~~~~iG~fGiG~~S~~~~----~~~v~V~Sr~ 163 (235)
T 2ior_A 95 TLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIV----ADKVTVRTRA 163 (235)
T ss_dssp EEEEEECSSCCCHHHHHHHHTTCCCTTHHHHHHHCCSCHHHHHHHHTTCCCCGGGGGGT----EEEEEEEEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHccccccchhhhhccccccccccCCCCChhHHHHHhC----cCeEEEEEec
Confidence 38899999999999999888665432110 011235689999755333 3346665554
No 162
>3by9_A Sensor protein; histidine kinase sensor domain, phosphoprotein, transferase, two-component regulatory system; 1.70A {Vibrio cholerae}
Probab=96.15 E-value=0.0043 Score=66.95 Aligned_cols=67 Identities=19% Similarity=0.166 Sum_probs=53.8
Q ss_pred CccceeeeecccCccceeeeccccCCCCCCCcEEEEEEeehhhhHHHHHHHHHHhhcCeEEEEECCcceEEEecCC
Q 001044 274 VASWHVAVSKFTNSPLLSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTN 349 (1177)
Q Consensus 274 ~~~w~~~~~~~~~~~~~~~~~pv~~~~~~~~~~~~v~gv~~~~~~i~~~l~~l~~~~~~~iyi~~~~G~ll~~s~~ 349 (1177)
.+.|. .++..++.+++.++.||+ . +|.++||+++...+..+.+++. +.+|.+|++|.+|.+++++..
T Consensus 115 ~~~~~-~~~~~~g~~~i~~~~pi~-~---~g~~~Gvv~~~i~l~~l~~~~~----~~~g~~~l~d~~G~ii~~~~~ 181 (260)
T 3by9_A 115 KSQYF-ALGSTSGQRGYYYAYPVI-Y---AAEILGVIVVKMDLSAIEQGWQ----NKSSYFVATDDHQVVFMSSQP 181 (260)
T ss_dssp CEEEE-EECTTTCCEEEEEEEEEE-E---TTEEEEEEEEEECSHHHHHTCC----CSSCEEEEECTTCBEEEESSG
T ss_pred CceEE-EEecCCCCEEEEEEEEEc-c---CCeEEEEEEEEEeHHHHHHHHh----cCCCcEEEECCCCeEEEcCCh
Confidence 44553 445566789999999998 3 6889999999998887777654 578999999999999998654
No 163
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=95.69 E-value=0.0078 Score=75.28 Aligned_cols=98 Identities=15% Similarity=0.145 Sum_probs=74.9
Q ss_pred HHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcc
Q 001044 1035 IVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSE 1114 (1177)
Q Consensus 1035 ~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~mdG~e~~r~IR~~~ 1114 (1177)
+.|...|++.||+|..+.++++|+..++. ...++.|++|++|+ +.+++++||+..
T Consensus 20 ~~L~~~Le~~g~~V~~a~s~~Da~~~i~~----------------------~~~i~avIld~d~~---~~~ll~~Ir~~~ 74 (715)
T 3n75_A 20 RELHRALERLNFQIVYPNDRDDLLKLIEN----------------------NARLCGVIFDWDKY---NLELCEEISKMN 74 (715)
T ss_dssp HHHHHHHHHTTCEEECCSSHHHHHHHHHH----------------------CTTEEEEEEEHHHH---HHHHHHHHHHHC
T ss_pred HHHHHHHHHCCcEEEEeCCHHHHHHHHHh----------------------CCCceEEEEecccc---HHHHHHHHHHhC
Confidence 34558899999999999999999999974 24699999999997 789999999863
Q ss_pred cccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCH-HHHHHHHH
Q 001044 1115 SEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDS-ERMVSTIL 1162 (1177)
Q Consensus 1115 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~-~~L~~~I~ 1162 (1177)
..+||++++......+.....-.++++|+.+..+. +.+..+|.
T Consensus 75 -----~~iPVFl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (715)
T 3n75_A 75 -----ENLPLYAFANTYSTLDVSLNDLRLQISFFEYALGAAEDIANKIK 118 (715)
T ss_dssp -----TTCEEEEECCTTCCCCGGGTTSCCEEEEECCCTTCHHHHHHHHH
T ss_pred -----CCCCEEEEecCCcccccchhhhhccCeEEEeCCCCHHHHHHHHH
Confidence 46999999988654443222235789999998754 44444443
No 164
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=95.04 E-value=0.0067 Score=65.75 Aligned_cols=58 Identities=21% Similarity=0.339 Sum_probs=35.6
Q ss_pred EEEEEeCCCCCChhhHhhhhcccccCCCC---------------CCCCCCccchhHHHHHHHHHHcCCEEEEEEeCC
Q 001044 684 CFEVDDTGCGIDQSKWETVFESFEQGDPS---------------TTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNS 745 (1177)
Q Consensus 684 ~i~V~DtG~GI~~e~l~~IFe~F~q~d~s---------------~~~~~~GtGLGLaIvk~IVe~~GG~I~v~S~~g 745 (1177)
.|.|.|||+||+++++...|..+.+.... ....-|..|+|+.-+-.++ .++.|.|...
T Consensus 80 ~i~I~DnG~GMt~edl~~~l~~ia~Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S~f~va----~~v~V~Sr~~ 152 (236)
T 2gqp_A 80 LLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVA----DKVIVTSKHN 152 (236)
T ss_dssp EEEEEECSCCCCHHHHHHHHHCC---------------------CHHHHHHTTCGGGGGGGTE----EEEEEEEECT
T ss_pred EEEEEECCcCCCHHHHHHHHhhhcccccHhHHHHhhccccccccchhhcCCCCcchhhHhhcC----CEEEEEEeCC
Confidence 47899999999999998888665432110 0001134788886554443 5677777653
No 165
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=95.03 E-value=0.21 Score=48.97 Aligned_cols=119 Identities=15% Similarity=0.166 Sum_probs=82.9
Q ss_pred CcEEEEeecChhHHHHHHHHHHhccce-eeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCC
Q 001044 772 NTVVVLATVGSMERMIISQWLRKKKVS-TLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 850 (1177)
Q Consensus 772 ~~~v~~~~~~~~~r~~~~~~l~~~g~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 850 (1177)
+..++++++....|..+...++..|.. +..+.+...+...++. .+
T Consensus 12 ~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~----------------------------------~~ 57 (134)
T 3to5_A 12 NMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKK----------------------------------GD 57 (134)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHH----------------------------------HC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHh----------------------------------CC
Confidence 346889999999999999999999975 4445544443333221 24
Q ss_pred ceEEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHH
Q 001044 851 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAV 926 (1177)
Q Consensus 851 ~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~ 926 (1177)
++++++|+.++++++.-+-+.++...... ...+.+.+.........+..+.|.+.++.||+....+...+..++
T Consensus 58 ~DlillD~~MP~mdG~el~~~ir~~~~~~--~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l 131 (134)
T 3to5_A 58 FDFVVTDWNMPGMQGIDLLKNIRADEELK--HLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIF 131 (134)
T ss_dssp CSEEEEESCCSSSCHHHHHHHHHHSTTTT--TCCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhCCCCC--CCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Confidence 67899999999999865555554332222 223445555555555666777899999999999999988877654
No 166
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=94.77 E-value=0.042 Score=63.79 Aligned_cols=50 Identities=30% Similarity=0.543 Sum_probs=34.5
Q ss_pred EEEEEeCCCCCChhh--------HhhhhcccccCCC---CCCCCCCc-cchhHHHHHHHHHH
Q 001044 684 CFEVDDTGCGIDQSK--------WETVFESFEQGDP---STTRKHGG-TGLGLSIVRTLVNK 733 (1177)
Q Consensus 684 ~i~V~DtG~GI~~e~--------l~~IFe~F~q~d~---s~~~~~~G-tGLGLaIvk~IVe~ 733 (1177)
.|+|.|+|+|||.+. .+-+|..+..+.. ......+| .|.||+.|..+-+.
T Consensus 67 ~I~V~DnG~GIp~~~~~~~~~~~~elv~~~lhagsKf~~~~~~vSgGl~GvGls~vnalS~~ 128 (391)
T 1ei1_A 67 SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQK 128 (391)
T ss_dssp CEEEEECSSCCCCSBCTTTSSBHHHHHHHSTTEESCSSSSSCSSCSCCSSCHHHHHHHTEEE
T ss_pred EEEEEECCCCcccCcccccCcchHHHhheeccccCCcCCCcccccCCccccchHHHHHhcCe
Confidence 389999999999998 4457876554322 11112234 89999999888753
No 167
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=94.36 E-value=0.71 Score=46.69 Aligned_cols=118 Identities=17% Similarity=0.188 Sum_probs=82.4
Q ss_pred CcEEEEE----ecChHHHHHHHHHHhhcCCEEEEE---cCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001044 1021 GLRILLA----EDTPLIQIVACKILEKVGATVSVV---PDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1093 (1177)
Q Consensus 1021 g~~ILIV----dD~~~~~~~l~~~L~~~G~~v~~a---~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIl 1093 (1177)
..+||++ |-+..-..++..+|+..||+|... ...++.++.+.+ ..+|+|.
T Consensus 18 ~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~-----------------------~~~diV~ 74 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQ-----------------------EDVDVIG 74 (161)
T ss_dssp SCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHH-----------------------TTCSEEE
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHh-----------------------cCCCEEE
Confidence 4589988 888888899999999999999854 356667776654 4799999
Q ss_pred EeCCCCCC-C-HHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001044 1094 MDCQMPKM-D-GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1166 (1177)
Q Consensus 1094 mDi~MP~m-d-G~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~ 1166 (1177)
+-+.|... . --++.+.+|+. +..++||+ +-+....++...+.+.|+|.+...--+..+....+.++++
T Consensus 75 lS~~~~~~~~~~~~~i~~L~~~----g~~~i~v~-vGG~~~~~~~~~l~~~G~d~v~~~~~~~~~~~~~~~~~~~ 144 (161)
T 2yxb_A 75 VSILNGAHLHLMKRLMAKLREL----GADDIPVV-LGGTIPIPDLEPLRSLGIREIFLPGTSLGEIIEKVRKLAE 144 (161)
T ss_dssp EEESSSCHHHHHHHHHHHHHHT----TCTTSCEE-EEECCCHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHH
T ss_pred EEeechhhHHHHHHHHHHHHhc----CCCCCEEE-EeCCCchhcHHHHHHCCCcEEECCCCCHHHHHHHHHHHHH
Confidence 99887631 1 23344555542 22356655 4566666666677899999877655566667777766654
No 168
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A
Probab=94.07 E-value=0.59 Score=42.82 Aligned_cols=106 Identities=17% Similarity=0.213 Sum_probs=78.9
Q ss_pred cEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC-CC
Q 001044 1022 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM-PK 1100 (1177)
Q Consensus 1022 ~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~M-P~ 1100 (1177)
..||+|-.+...-..++.++....|.+.+...-. ....-|+|+|...+ |.
T Consensus 13 ~~iL~VtEd~~ls~QlKel~~~~eY~~~is~~~~-----------------------------~e~~AdlIfCEYlLLPe 63 (121)
T 3q7r_A 13 KHVLLVSEHWDLFFQTKELLNPEEYRCTIGQQYK-----------------------------QELSADLVVCEYSLLPR 63 (121)
T ss_dssp EEEEEECSCHHHHHHHHHHSCTTTEEEEEESSCC-----------------------------CCTTEEEEEEEGGGSCT
T ss_pred cEEEEEecCchhhHHHHHhcCCcceeEEeccccC-----------------------------CcccceeEEEeeecChH
Confidence 5799999999999999999988888888765321 23458999998754 32
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcC
Q 001044 1101 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1168 (1177)
Q Consensus 1101 mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~ 1168 (1177)
.|+... -....-+|+|=.--+++...+.++-|+. ||..|++++.|.++|+..+++.
T Consensus 64 --------~ifS~k---~~~~~dliVLfD~F~EEa~v~vLd~Ga~-yLlrPIT~kvldAvIraFLrqh 119 (121)
T 3q7r_A 64 --------EIRSPK---SLEGSFVLVLLDFFDEETSVDLLDRGFW-YLIRPITPRILKSAISLFLSQH 119 (121)
T ss_dssp --------TCCCCT---TCCSCEEEEEESSCCHHHHHHHHHTTCE-EEESCCCHHHHHHHHHHHHHHC
T ss_pred --------HhcCCC---CCCcccEEEEehhhchHHHHHHHhCCce-eEeccCcHHHHHHHHHHHHhcc
Confidence 233211 1122346666666667778899999999 9999999999999999988764
No 169
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=93.91 E-value=0.53 Score=50.45 Aligned_cols=141 Identities=16% Similarity=0.096 Sum_probs=80.4
Q ss_pred ceEEEEEEecCCCCccccccCCCCCCcEEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCC
Q 001044 747 GTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNG 826 (1177)
Q Consensus 747 GT~f~~~Lpl~~~~~~~~~~~~~~~~~~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 826 (1177)
||+|++.+|+..+..... ...+...+++.++....+..+..++...|..+..+.+...+...+..
T Consensus 1 Gs~~~~~~~~~~~~~~~~---~~~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~------------ 65 (250)
T 3r0j_A 1 GTHMRKGVDLVTAGTPGE---NTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARE------------ 65 (250)
T ss_dssp ----------------------CCSSCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH------------
T ss_pred CCccccccceeeccCCCC---CCCCCceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh------------
Confidence 899999998754322111 12234578889999988999999998888776666555444433221
Q ss_pred CCCCCCCChhhHHHhhhhhhccCCceEEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCc
Q 001044 827 FDAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQN 906 (1177)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~~~~~p~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 906 (1177)
.+++++++|+.++++++..+-+.++. ...... +++..............+.|.+
T Consensus 66 ----------------------~~~dlvllD~~lp~~~g~~~~~~lr~---~~~~~~-ii~lt~~~~~~~~~~~~~~Ga~ 119 (250)
T 3r0j_A 66 ----------------------TRPDAVILDVXMPGMDGFGVLRRLRA---DGIDAP-ALFLTARDSLQDKIAGLTLGGD 119 (250)
T ss_dssp ----------------------HCCSEEEEESCCSSSCHHHHHHHHHH---TTCCCC-EEEEECSTTHHHHHHHHTSTTC
T ss_pred ----------------------CCCCEEEEeCCCCCCCHHHHHHHHHh---cCCCCC-EEEEECCCCHHHHHHHHHcCCc
Confidence 23578999999999887544333332 122222 2333333333444556678889
Q ss_pred EEEeccCChhHHHHHHHHHHhc
Q 001044 907 IVVTKPLYKGKMIQLLETAVRG 928 (1177)
Q Consensus 907 ~~~~kP~~~~~l~~~l~~~~~~ 928 (1177)
.++.||+....+...+..+...
T Consensus 120 ~yl~Kp~~~~~L~~~i~~~~~~ 141 (250)
T 3r0j_A 120 DYVTKPFSLEEVVARLRVILRR 141 (250)
T ss_dssp EEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHh
Confidence 9999999999999988887653
No 170
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=93.67 E-value=0.13 Score=62.28 Aligned_cols=48 Identities=13% Similarity=0.288 Sum_probs=30.1
Q ss_pred EEEEEeCCCCCChhhHhhhhcccccCCC------------CCCCCCCccchhHHHHHHHH
Q 001044 684 CFEVDDTGCGIDQSKWETVFESFEQGDP------------STTRKHGGTGLGLSIVRTLV 731 (1177)
Q Consensus 684 ~i~V~DtG~GI~~e~l~~IFe~F~q~d~------------s~~~~~~GtGLGLaIvk~IV 731 (1177)
.|+|.|||+||+++++..-|...-.... .....-|..|+|+.=+-.++
T Consensus 75 ~I~I~DnGiGMt~edl~~~l~tiA~Sg~~~f~e~l~~~~~~~~~~iG~fGvGfyS~f~Va 134 (559)
T 1y4s_A 75 TLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVA 134 (559)
T ss_dssp EEEEEECSSCCCHHHHHHHHSCCSCCCCCCTTCC--------CCCCSSCCCSGGGHHHHE
T ss_pred EEEEEECCCCCCHHHHHHHHhhhcccccHHHHHHhhccccccccccCCCCcchhhhhhcc
Confidence 4789999999999998776654321110 11123366789986555553
No 171
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=93.19 E-value=0.16 Score=53.54 Aligned_cols=48 Identities=27% Similarity=0.359 Sum_probs=23.1
Q ss_pred EEEEeCCCCCChhhH--------hhh-hcccccCCC---CCCCCCCccchhHHHHHHHHH
Q 001044 685 FEVDDTGCGIDQSKW--------ETV-FESFEQGDP---STTRKHGGTGLGLSIVRTLVN 732 (1177)
Q Consensus 685 i~V~DtG~GI~~e~l--------~~I-Fe~F~q~d~---s~~~~~~GtGLGLaIvk~IVe 732 (1177)
|+|.|+|+|||.++. +.+ +.+....+- ......|=.|.||+.+..+-+
T Consensus 51 i~V~DnG~GIp~~~~~~~~~~~~e~i~~~~hatsK~~~~~~~~s~GfrGeglssinalS~ 110 (201)
T 3fv5_A 51 LEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSK 110 (201)
T ss_dssp EEEEECSSCCCCSBCTTCSSBHHHHHHHCC---------------------CHHHHHTEE
T ss_pred EEEEECCCCcCcccccccCcchhheeeeeeccccCcCCCcccccCcccceecchhhcccc
Confidence 889999999999984 443 343322110 011112336899998887763
No 172
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=92.89 E-value=0.1 Score=57.49 Aligned_cols=57 Identities=19% Similarity=0.285 Sum_probs=32.9
Q ss_pred EEEEEeCCCCCChhhHhhhhcc--------cc---cCCCCCCCCCCccchhHHHHHHHHHHcCCEEEEEEeC
Q 001044 684 CFEVDDTGCGIDQSKWETVFES--------FE---QGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKN 744 (1177)
Q Consensus 684 ~i~V~DtG~GI~~e~l~~IFe~--------F~---q~d~s~~~~~~GtGLGLaIvk~IVe~~GG~I~v~S~~ 744 (1177)
.|.|.|||+||+++++..-+.. |. +.+......-|-.|+|+.-|-.+ +-++.|.|..
T Consensus 94 tLtI~DNGiGMt~edL~~~LgtIa~Sgtk~f~e~l~~~~~d~~~IGqFGVGFySaf~v----adkV~V~Sk~ 161 (281)
T 3peh_A 94 ILSITDTGIGMTKVDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFLV----ADKVIVYTKN 161 (281)
T ss_dssp EEEEEECSCCCCHHHHHHHHHHHHHSCHHHHHHHHHHTTCCSTTTTTTTCGGGGGGGT----EEEEEEEEEC
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhHhhhhHHHhhhccccccccccccCccchhhccc----cCEEEEEEec
Confidence 3789999999999997643321 11 11011122447789998665333 2345555554
No 173
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=92.72 E-value=0.15 Score=62.70 Aligned_cols=22 Identities=18% Similarity=0.465 Sum_probs=18.1
Q ss_pred EEEEEeCCCCCChhhHhhhhcc
Q 001044 684 CFEVDDTGCGIDQSKWETVFES 705 (1177)
Q Consensus 684 ~i~V~DtG~GI~~e~l~~IFe~ 705 (1177)
.|+|.|||+||+++++..-|..
T Consensus 74 ~I~I~DnGiGMt~edl~~~l~t 95 (677)
T 2cg9_A 74 VLEIRDSGIGMTKAELINNLGT 95 (677)
T ss_dssp EEEEEECSCCCCHHHHHGGGSS
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3789999999999998765543
No 174
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=92.53 E-value=0.99 Score=44.30 Aligned_cols=119 Identities=10% Similarity=0.166 Sum_probs=77.0
Q ss_pred CcEEEEeecChhHHHHHHHHHHhccceee-eccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCC
Q 001044 772 NTVVVLATVGSMERMIISQWLRKKKVSTL-ETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 850 (1177)
Q Consensus 772 ~~~v~~~~~~~~~r~~~~~~l~~~g~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 850 (1177)
...+++.+.....+..+..++...|.... .+.....+...+... ..+
T Consensus 36 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~--------------------------------~~~ 83 (157)
T 3hzh_A 36 PFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNH--------------------------------YPN 83 (157)
T ss_dssp ECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH--------------------------------GGG
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhc--------------------------------CCC
Confidence 34688888898889999999998887765 555555444333221 113
Q ss_pred ceEEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHH
Q 001044 851 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAV 926 (1177)
Q Consensus 851 ~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~ 926 (1177)
+.++++|..+.+.++..+-+.++. ......+ ++..............+.|...++.||+....+...+..++
T Consensus 84 ~dliilD~~l~~~~g~~~~~~lr~---~~~~~~i-i~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l 155 (157)
T 3hzh_A 84 IDIVTLXITMPKMDGITCLSNIME---FDKNARV-IMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVF 155 (157)
T ss_dssp CCEEEECSSCSSSCHHHHHHHHHH---HCTTCCE-EEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTT
T ss_pred CCEEEEeccCCCccHHHHHHHHHh---hCCCCcE-EEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHh
Confidence 468899999998877544333332 2222233 33333333444556667888899999999999988876543
No 175
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=91.93 E-value=0.17 Score=62.08 Aligned_cols=48 Identities=13% Similarity=0.290 Sum_probs=29.7
Q ss_pred EEEEEeCCCCCChhhHhhhhcccccCC------------CCCCCCCCccchhHHHHHHHH
Q 001044 684 CFEVDDTGCGIDQSKWETVFESFEQGD------------PSTTRKHGGTGLGLSIVRTLV 731 (1177)
Q Consensus 684 ~i~V~DtG~GI~~e~l~~IFe~F~q~d------------~s~~~~~~GtGLGLaIvk~IV 731 (1177)
.|+|.|||+||+++++..-|...-+.. ......-|..|+|++=+-.++
T Consensus 75 ~I~I~DnGiGMt~edl~~~l~tiA~Sg~~~f~~~l~~~~~~~~~~iG~fGvGfyS~f~Va 134 (624)
T 2ioq_A 75 TLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVA 134 (624)
T ss_dssp EEEEEECSCCCCHHHHHHHHHHHCC---------------CCTTHHHHHHHHHHHHHHHE
T ss_pred EEEEEECCCCCCHHHHHHHHHhhcccccHHHHHHhcccccccccccCCCCccHHHHHhcC
Confidence 478999999999999876554332111 001112245699997666654
No 176
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=91.84 E-value=0.057 Score=58.83 Aligned_cols=56 Identities=20% Similarity=0.354 Sum_probs=34.3
Q ss_pred EEEEEeCCCCCChhhHhhhhcc--------cc---cCCCCCCCCCCccchhHHHHHHHHHHcCCEEEEEEeC
Q 001044 684 CFEVDDTGCGIDQSKWETVFES--------FE---QGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKN 744 (1177)
Q Consensus 684 ~i~V~DtG~GI~~e~l~~IFe~--------F~---q~d~s~~~~~~GtGLGLaIvk~IVe~~GG~I~v~S~~ 744 (1177)
.|.|.|||+||+++++..-|.+ |. +.. .....-|-.|+||+-+-.+. -++.|.|..
T Consensus 108 ~I~I~DnG~GMt~edl~~~l~~ia~S~~~~f~~~L~~~-~~~~~iG~fG~Gf~S~f~Va----dkv~V~Sr~ 174 (256)
T 3o0i_A 108 TLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAG-ADISMIGQFGVGFYSAYLVA----EKVTVITKH 174 (256)
T ss_dssp EEEEEECSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTT-CCGGGGGGGTCGGGGGGGTE----EEEEEEEEC
T ss_pred EEEEecCCCCcCHHHHHHHHHhhccccccchhhhhccc-CCccccCCCcchHHHhhccC----CeEEEEEcC
Confidence 4789999999999998655532 21 111 11223466799998764332 256666654
No 177
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=91.78 E-value=1.8 Score=41.74 Aligned_cols=121 Identities=14% Similarity=0.172 Sum_probs=76.0
Q ss_pred CcEEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCc
Q 001044 772 NTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPV 851 (1177)
Q Consensus 772 ~~~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 851 (1177)
...+++.+.....+..+..++...|.....+.....+...+. ..++
T Consensus 14 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~----------------------------------~~~~ 59 (143)
T 3m6m_D 14 SMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMA----------------------------------EEDY 59 (143)
T ss_dssp -CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHH----------------------------------HSCC
T ss_pred cceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHh----------------------------------cCCC
Confidence 346788888888888899999888876655544333322221 1245
Q ss_pred eEEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHH
Q 001044 852 YVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAV 926 (1177)
Q Consensus 852 ~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~ 926 (1177)
.++++|..++++++..+-+.++...........+.+..............+.|.+.++.||+....+...+..+.
T Consensus 60 dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~ 134 (143)
T 3m6m_D 60 DAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLA 134 (143)
T ss_dssp SEEEEESCCSSSCHHHHHHHHHHHHHTTCCCCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhchhccCCCCeEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHH
Confidence 789999999999875554444432221112222333343334444556667888999999999999999887754
No 178
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=91.28 E-value=0.12 Score=63.50 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=18.1
Q ss_pred EEEEEeCCCCCChhhHhhhhcc
Q 001044 684 CFEVDDTGCGIDQSKWETVFES 705 (1177)
Q Consensus 684 ~i~V~DtG~GI~~e~l~~IFe~ 705 (1177)
.|+|.|||+||+++++..-|..
T Consensus 93 ~I~I~DnGiGMt~edl~~~l~t 114 (666)
T 2o1u_A 93 LLHVTDTGVGMTREELVKNLGT 114 (666)
T ss_dssp EEEEEECSCCCCHHHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHhh
Confidence 3789999999999998766643
No 179
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=91.19 E-value=0.32 Score=56.03 Aligned_cols=19 Identities=5% Similarity=0.001 Sum_probs=16.2
Q ss_pred CHHHHHHHHHHHHhhHhhc
Q 001044 608 DPGRVFQIFSNLINNSIKF 626 (1177)
Q Consensus 608 D~~rL~QIL~NLL~NAIKf 626 (1177)
|+..+..++.-||+|||..
T Consensus 27 ~~~gl~~~v~ElvdNsiDe 45 (369)
T 3cwv_A 27 GEYGLHHLVYFLLDVAYEE 45 (369)
T ss_dssp SHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhhhHhH
Confidence 6678889999999999985
No 180
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=90.66 E-value=1.4 Score=47.61 Aligned_cols=96 Identities=18% Similarity=0.113 Sum_probs=67.1
Q ss_pred HHHHHhhcCCEEE--EEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCH-----HHHHHH
Q 001044 1037 ACKILEKVGATVS--VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDG-----YEATIE 1109 (1177)
Q Consensus 1037 l~~~L~~~G~~v~--~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~mdG-----~e~~r~ 1109 (1177)
..+.|.+.||.|. ++.|...|-.+.+ -.++.| |.+-.|.-.| +++++.
T Consensus 127 aa~~L~~~Gf~Vlpy~~dd~~~akrl~~------------------------~G~~aV-mPlg~pIGsG~Gi~~~~lI~~ 181 (265)
T 1wv2_A 127 AAEQLVKDGFDVMVYTSDDPIIARQLAE------------------------IGCIAV-MPLAGLIGSGLGICNPYNLRI 181 (265)
T ss_dssp HHHHHHTTTCEEEEEECSCHHHHHHHHH------------------------SCCSEE-EECSSSTTCCCCCSCHHHHHH
T ss_pred HHHHHHHCCCEEEEEeCCCHHHHHHHHH------------------------hCCCEE-EeCCccCCCCCCcCCHHHHHH
Confidence 4556677899987 4556555554443 257777 7776664333 788999
Q ss_pred HHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE-----CCCCHHHHHHHHHH
Q 001044 1110 IRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT-----KPIDSERMVSTILR 1163 (1177)
Q Consensus 1110 IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~-----KP~~~~~L~~~I~~ 1163 (1177)
|++. .++|||+=-+-..+++..+|++.|+|+++. |--++..+..++..
T Consensus 182 I~e~------~~vPVI~eGGI~TPsDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~ 234 (265)
T 1wv2_A 182 ILEE------AKVPVLVDAGVGTASDAAIAMELGCEAVLMNTAIAHAKDPVMMAEAMKH 234 (265)
T ss_dssp HHHH------CSSCBEEESCCCSHHHHHHHHHHTCSEEEESHHHHTSSSHHHHHHHHHH
T ss_pred HHhc------CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHH
Confidence 9873 358999977778999999999999999884 43445555555543
No 181
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=90.30 E-value=0.27 Score=52.80 Aligned_cols=59 Identities=15% Similarity=0.299 Sum_probs=37.6
Q ss_pred EEEEEeCCCCCChhhHhhhhcccccC----------CCCCCCCCCccchhHHHHHHHHHHcCCEEEEEEeCCC
Q 001044 684 CFEVDDTGCGIDQSKWETVFESFEQG----------DPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSP 746 (1177)
Q Consensus 684 ~i~V~DtG~GI~~e~l~~IFe~F~q~----------d~s~~~~~~GtGLGLaIvk~IVe~~GG~I~v~S~~g~ 746 (1177)
.|.|.|||+||+++++...|.+.... +......-|-.|+||+-+-.+ .-++.|.|....
T Consensus 80 ~i~V~DnG~GMs~edl~~~l~~ia~S~~~~f~~~l~~~~~~~~iG~fG~G~~S~~~v----ad~v~V~Sr~~~ 148 (228)
T 3t0h_A 80 TLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLV----AEKVTVITKHND 148 (228)
T ss_dssp EEEEEECSCCCCHHHHHTGGGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGT----EEEEEEEEECTT
T ss_pred EEEEEeCCCCCCHHHHHHHHHhhccccchhhhhhhcccCCcccCCCCChhHHHHhcc----CCEEEEEEecCC
Confidence 47899999999999997666443210 001122346679999866332 337888887643
No 182
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=89.66 E-value=0.22 Score=53.71 Aligned_cols=55 Identities=20% Similarity=0.328 Sum_probs=32.5
Q ss_pred EEEEEeCCCCCChhhHhhhhc--------ccc---cCCCCCCCCCCccchhHHHHHHHHHHcCCEEEEEEe
Q 001044 684 CFEVDDTGCGIDQSKWETVFE--------SFE---QGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKK 743 (1177)
Q Consensus 684 ~i~V~DtG~GI~~e~l~~IFe--------~F~---q~d~s~~~~~~GtGLGLaIvk~IVe~~GG~I~v~S~ 743 (1177)
.|.|.|||+||+++++..-+. .|. +.+. ....-|-.|+|+.-|-.+. -++.|.|.
T Consensus 87 ~L~I~DnGiGMt~edL~~~LgtIA~Sgtk~f~e~~~~~~-d~~~IGqFGvGfySaf~va----dkv~V~Sk 152 (239)
T 3nmq_A 87 TLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGA-DISMIGQFGVGFYSAYLVA----EKVVVITK 152 (239)
T ss_dssp EEEEEECSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTC-CGGGGGGGTCGGGGGGGTE----EEEEEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhcccchhhhhhhcccC-CcccccccCcccccccccC----CEEEEEEe
Confidence 478999999999999843221 121 1111 1223467899998764432 23455544
No 183
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=88.81 E-value=0.7 Score=49.44 Aligned_cols=65 Identities=23% Similarity=0.380 Sum_probs=36.9
Q ss_pred EEEEeCCCCCChhh-------HhhhhcccccCCC----CCCCCCCccchhHHHHHHHHHHcCCEEEEEEeCCCceEEEEE
Q 001044 685 FEVDDTGCGIDQSK-------WETVFESFEQGDP----STTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLY 753 (1177)
Q Consensus 685 i~V~DtG~GI~~e~-------l~~IFe~F~q~d~----s~~~~~~GtGLGLaIvk~IVe~~GG~I~v~S~~g~GT~f~~~ 753 (1177)
|+|.|+|.|||.+. .+-+|....-+.. ......|=.|.|++.|..+-+. +.|++.. .|-.+...
T Consensus 74 i~V~DnG~GIp~~~h~~~~~~~e~v~t~lhag~Kfd~~~yk~SgGlhGvG~svvNALS~~----l~v~v~r-~g~~~~q~ 148 (226)
T 4emv_A 74 LTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNALSSW----LEVEITR-DGAVYKQR 148 (226)
T ss_dssp EEEEECSSCCCCSBCGGGCBHHHHHHHCBC--------------CGGGCCHHHHHHTEEE----EEEEEEE-TTEEEEEE
T ss_pred EEEEEcCCCccccccccCceehheeEEeecccCccCccceEeccccccccchhhhhcccc----eEEEEEe-CCcEEEEE
Confidence 88999999999998 6667743322111 1111223479999998877653 3444432 34444444
Q ss_pred E
Q 001044 754 L 754 (1177)
Q Consensus 754 L 754 (1177)
+
T Consensus 149 f 149 (226)
T 4emv_A 149 F 149 (226)
T ss_dssp E
T ss_pred E
Confidence 4
No 184
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=88.44 E-value=6.1 Score=37.35 Aligned_cols=126 Identities=12% Similarity=0.097 Sum_probs=78.6
Q ss_pred cEEEEeecChhHHHHHHHHHHhccc--eeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCC
Q 001044 773 TVVVLATVGSMERMIISQWLRKKKV--STLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 850 (1177)
Q Consensus 773 ~~v~~~~~~~~~r~~~~~~l~~~g~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 850 (1177)
..+++.+.....+..+..++...|. ....+.....+...+.... ....+
T Consensus 10 ~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~-----------------------------~~~~~ 60 (146)
T 3ilh_A 10 DSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELY-----------------------------AAGRW 60 (146)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHH-----------------------------TSSCC
T ss_pred ceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhh-----------------------------ccCCC
Confidence 4577788888888889999998887 5555555555444433211 11235
Q ss_pred ceEEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcC-CcEEEeccCChhHHHHHHHHHHh
Q 001044 851 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREG-QNIVVTKPLYKGKMIQLLETAVR 927 (1177)
Q Consensus 851 ~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~kP~~~~~l~~~l~~~~~ 927 (1177)
+.++++|..+++.++..+-+.++...........+++................| ...++.||+....+...+.....
T Consensus 61 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~ 138 (146)
T 3ilh_A 61 PSIICIDINMPGINGWELIDLFKQHFQPMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLN 138 (146)
T ss_dssp CSEEEEESSCSSSCHHHHHHHHHHHCGGGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHC
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHhhhhccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 678999999999887544444332110011222233333333334444555566 88899999999999999887654
No 185
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=88.23 E-value=0.8 Score=48.81 Aligned_cols=65 Identities=26% Similarity=0.435 Sum_probs=34.7
Q ss_pred EEEEeCCCCCChhhH--------hhhhcccccCCC----CCCCCCCccchhHHHHHHHHHHcCCEEEEEEeCCCceEEEE
Q 001044 685 FEVDDTGCGIDQSKW--------ETVFESFEQGDP----STTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQL 752 (1177)
Q Consensus 685 i~V~DtG~GI~~e~l--------~~IFe~F~q~d~----s~~~~~~GtGLGLaIvk~IVe~~GG~I~v~S~~g~GT~f~~ 752 (1177)
|+|.|+|.|||.+.. +-+|....-+.+ ......|=.|.||+.|..+-+. +.|++.. .|..++.
T Consensus 69 i~V~DnGrGIp~~~~~~~~~~~~e~i~t~lhag~Kfd~~~yk~SgGlhGvG~svvNAlS~~----l~v~v~r-~g~~~~~ 143 (220)
T 4duh_A 69 VSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQK----LELVIQR-EGKIHRQ 143 (220)
T ss_dssp EEEEECSSCCCCSEETTTTEEHHHHHHHSTTCSSCCCTTC--------CCCHHHHHHTEEE----EEEEEEE-TTEEEEE
T ss_pred EEEEECCcCcccccccccCcchhhheeeecccCCCcCCCccccccCccceecchhcccccc----eEEEEEE-CCEEEEE
Confidence 889999999999874 445632221111 1111123378999998887653 3444332 2444444
Q ss_pred EE
Q 001044 753 YL 754 (1177)
Q Consensus 753 ~L 754 (1177)
.+
T Consensus 144 ~f 145 (220)
T 4duh_A 144 IY 145 (220)
T ss_dssp EE
T ss_pred Ee
Confidence 44
No 186
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=87.89 E-value=6.9 Score=36.69 Aligned_cols=120 Identities=13% Similarity=0.163 Sum_probs=77.0
Q ss_pred cEEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCce
Q 001044 773 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 852 (1177)
Q Consensus 773 ~~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 852 (1177)
..+++.+.....+..+..++...|.....+.....+...+.. ..++.
T Consensus 8 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~---------------------------------~~~~d 54 (136)
T 3hdv_A 8 PLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHY---------------------------------QKRIG 54 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHH---------------------------------CTTEE
T ss_pred CeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHh---------------------------------CCCCc
Confidence 457788888888888889988888766655544433322211 12367
Q ss_pred EEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001044 853 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 928 (1177)
Q Consensus 853 ~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 928 (1177)
++++|..+.+.++..+-+.++... .... .+++..............+.|...++.||+....+...+.....+
T Consensus 55 lvi~D~~l~~~~g~~~~~~l~~~~--~~~~-~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (136)
T 3hdv_A 55 LMITDLRMQPESGLDLIRTIRASE--RAAL-SIIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKI 127 (136)
T ss_dssp EEEECSCCSSSCHHHHHHHHHTST--TTTC-EEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC-
T ss_pred EEEEeccCCCCCHHHHHHHHHhcC--CCCC-CEEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcC
Confidence 899999999887754444333221 1222 233333333334455566788899999999999999998887654
No 187
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=87.60 E-value=4.9 Score=37.27 Aligned_cols=117 Identities=16% Similarity=0.139 Sum_probs=74.5
Q ss_pred EEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCceE
Q 001044 774 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 853 (1177)
Q Consensus 774 ~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 853 (1177)
.+++.+.....+..+...+...|.....+.+...+...+. ..+..+
T Consensus 4 ~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~----------------------------------~~~~dl 49 (122)
T 3gl9_A 4 KVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLS----------------------------------EFTPDL 49 (122)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHT----------------------------------TBCCSE
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHH----------------------------------hcCCCE
Confidence 4677777888888888888888877665555444333221 123468
Q ss_pred EEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHH
Q 001044 854 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAV 926 (1177)
Q Consensus 854 v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~ 926 (1177)
+++|..++++++..+-+.++..... ....+.+..............+.|.+.++.||+....+...+....
T Consensus 50 vllD~~~p~~~g~~~~~~l~~~~~~--~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l 120 (122)
T 3gl9_A 50 IVLXIMMPVMDGFTVLKKLQEKEEW--KRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLL 120 (122)
T ss_dssp EEECSCCSSSCHHHHHHHHHTSTTT--TTSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred EEEeccCCCCcHHHHHHHHHhcccc--cCCCEEEEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHh
Confidence 8999999998875444443322111 1122233333334444555667889999999999999988876654
No 188
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=87.43 E-value=7.5 Score=36.75 Aligned_cols=120 Identities=10% Similarity=0.093 Sum_probs=77.1
Q ss_pred cEEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCce
Q 001044 773 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 852 (1177)
Q Consensus 773 ~~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 852 (1177)
..+++.+.....+..+...+...|..+..+.+...+...+.. .+..
T Consensus 5 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~----------------------------------~~~d 50 (136)
T 3t6k_A 5 HTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYK----------------------------------NLPD 50 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH----------------------------------SCCS
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh----------------------------------CCCC
Confidence 357778888888888888888888766655544443332211 2346
Q ss_pred EEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001044 853 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 928 (1177)
Q Consensus 853 ~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 928 (1177)
++++|..++++++..+-+.++.... .....+.+..............+.|...++.||+....+...+......
T Consensus 51 lvl~D~~lp~~~g~~~~~~lr~~~~--~~~~pii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~ 124 (136)
T 3t6k_A 51 ALICDVLLPGIDGYTLCKRVRQHPL--TKTLPILMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILAR 124 (136)
T ss_dssp EEEEESCCSSSCHHHHHHHHHHSGG--GTTCCEEEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC
T ss_pred EEEEeCCCCCCCHHHHHHHHHcCCC--cCCccEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhc
Confidence 8899999999887544443332111 1122233334334444455566788889999999999999988877653
No 189
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=86.77 E-value=6.4 Score=36.26 Aligned_cols=114 Identities=11% Similarity=0.048 Sum_probs=72.0
Q ss_pred EEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCceE
Q 001044 774 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 853 (1177)
Q Consensus 774 ~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 853 (1177)
.+++.+.....+..+...+...|.....+.+...+...+. ..+..+
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~----------------------------------~~~~dl 49 (120)
T 3f6p_A 4 KILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVE----------------------------------ELQPDL 49 (120)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH----------------------------------TTCCSE
T ss_pred eEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHh----------------------------------hCCCCE
Confidence 4667777778888888888888876665554443333221 123468
Q ss_pred EEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHH
Q 001044 854 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAV 926 (1177)
Q Consensus 854 v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~ 926 (1177)
+++|..+++.++..+-+.++. .. .. .+++..............+.|.+.++.||+....+...+....
T Consensus 50 ii~D~~~p~~~g~~~~~~lr~---~~-~~-~ii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l 117 (120)
T 3f6p_A 50 ILLDIMLPNKDGVEVCREVRK---KY-DM-PIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANL 117 (120)
T ss_dssp EEEETTSTTTHHHHHHHHHHT---TC-CS-CEEEEEESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh---cC-CC-CEEEEECCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHH
Confidence 899999998876443333332 11 22 2333333333344445667888999999999999888876654
No 190
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=86.71 E-value=7.1 Score=38.07 Aligned_cols=110 Identities=12% Similarity=0.083 Sum_probs=73.0
Q ss_pred ecChHHHHHHHHHHhhcCCEEE---EEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCC--
Q 001044 1028 EDTPLIQIVACKILEKVGATVS---VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMD-- 1102 (1177)
Q Consensus 1028 dD~~~~~~~l~~~L~~~G~~v~---~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~md-- 1102 (1177)
|-+..-...+..+|+..||+|. .....++.++.+.+ ..+|+|.+-+.|..-.
T Consensus 14 d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~-----------------------~~~d~v~lS~~~~~~~~~ 70 (137)
T 1ccw_A 14 DCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIE-----------------------TKADAILVSSLYGQGEID 70 (137)
T ss_dssp CCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHH-----------------------HTCSEEEEEECSSTHHHH
T ss_pred chhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHh-----------------------cCCCEEEEEecCcCcHHH
Confidence 4455666788889999999998 34667788887764 2699999998885321
Q ss_pred HHHHHHHHHhcccccCCCCcceEEEecCC-----C-HHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHh
Q 001044 1103 GYEATIEIRKSESEHGARNIPIVALTAHA-----M-NADEKKCLGVGMNAYLTKPIDSERMVSTILRLT 1165 (1177)
Q Consensus 1103 G~e~~r~IR~~~~~~~~~~ipIIalTa~~-----~-~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~ 1165 (1177)
--++.+.+|+. +.++++|++ -+.. + .++...+.++|+|.|..---+..+....+...+
T Consensus 71 ~~~~i~~l~~~----g~~~i~v~v-GG~~~~~~~~~~~~~~~~~~~G~d~~~~~g~~~~~~~~~l~~~~ 134 (137)
T 1ccw_A 71 CKGLRQKCDEA----GLEGILLYV-GGNIVVGKQHWPDVEKRFKDMGYDRVYAPGTPPEVGIADLKKDL 134 (137)
T ss_dssp HTTHHHHHHHT----TCTTCEEEE-EESCSSSSCCHHHHHHHHHHTTCSEECCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc----CCCCCEEEE-ECCCcCchHhhhhhHHHHHHCCCCEEECCCCCHHHHHHHHHHHh
Confidence 12345556643 223567654 3432 1 122456889999999976667777777776544
No 191
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=86.47 E-value=7.7 Score=36.40 Aligned_cols=122 Identities=12% Similarity=0.140 Sum_probs=74.3
Q ss_pred CCcEEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCC
Q 001044 771 PNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 850 (1177)
Q Consensus 771 ~~~~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 850 (1177)
.+..+++.+.....+..+...+...|..+..+.+...+...+ . ..+
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~--------------------------------~--~~~ 51 (136)
T 1dcf_A 6 TGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVV--------------------------------S--HEH 51 (136)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHC--------------------------------C--TTC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHH--------------------------------h--ccC
Confidence 345678888888888888888888877655544433322110 0 123
Q ss_pred ceEEEEEecccccChhHHHHHhhh-hhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001044 851 VYVVVIDIALLDLSSDLWREQLNS-LDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 927 (1177)
Q Consensus 851 ~~~v~id~~l~d~~~~~~~e~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 927 (1177)
.++++|..+++.++..+-+.++. ............+..............+.|...++.||+....+...+..+..
T Consensus 52 -dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~ 128 (136)
T 1dcf_A 52 -KVVFMDVCMPGVENYQIALRIHEKFTKQRHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLE 128 (136)
T ss_dssp -SEEEEECCSSTTTTTHHHHHHHHHHC-CCSCCCEEEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHS
T ss_pred -CEEEEeCCCCCCcHHHHHHHHHHhhhhccCCCceEEEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhc
Confidence 68899999999887543333321 11000011122333333333344455667888999999999999988877654
No 192
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=86.24 E-value=5.5 Score=41.10 Aligned_cols=175 Identities=10% Similarity=0.043 Sum_probs=82.8
Q ss_pred HHHHcCCEEEEEEeCCCceEEEEEEecCCCCcccc----ccCCCCCCcEEEEeecChhHHHHHHHHHHhccc-eeeeccc
Q 001044 730 LVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQ----IYDADFPNTVVVLATVGSMERMIISQWLRKKKV-STLETSE 804 (1177)
Q Consensus 730 IVe~~GG~I~v~S~~g~GT~f~~~Lpl~~~~~~~~----~~~~~~~~~~v~~~~~~~~~r~~~~~~l~~~g~-~~~~~~~ 804 (1177)
-+.+|||+|.|+|++|+||+|+|+||+..+..... .......+..+++.++....+..+..++...|. .+..+.+
T Consensus 15 ~~~~hgG~i~v~S~~g~Gs~f~~~lP~~~~~~~~~~~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~ 94 (206)
T 3mm4_A 15 PRGSHMASTDSESETRVKSVRTGRKPIGNPEDEQETSKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDS 94 (206)
T ss_dssp C---------------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESS
T ss_pred cccccCCceeeeccCCCcceeeeccCCCCCcccccccCCCcccccCCCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCC
Confidence 46899999999999999999999999865432211 122234466899999999999999999999987 5666666
Q ss_pred hhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCceEEEEEecccccChhHHHHHhhhhhhhhcccee
Q 001044 805 WHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMF 884 (1177)
Q Consensus 805 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~ 884 (1177)
...+...+..... ...........+++++++|..++++++..+-+.++...........
T Consensus 95 ~~eal~~l~~~~~---------------------~~~~~~~~~~~~~dlillD~~lp~~~G~el~~~lr~~~~~~~~~~p 153 (206)
T 3mm4_A 95 GKEALRLVTEGLT---------------------QREEQGSVDKLPFDYIFMDCQMPEMDGYEATREIRKVEKSYGVRTP 153 (206)
T ss_dssp HHHHHHHHHHHHH---------------------HHHHHTCSSCCSCSEEEEESCCSSSCHHHHHHHHHHHHHTTTCCCC
T ss_pred HHHHHHHHHhhcc---------------------cccccccccCCCCCEEEEcCCCCCCCHHHHHHHHHhhhhhcCCCCc
Confidence 5555544432100 0000000011356789999999998875544444433222112222
Q ss_pred eeeeccCC-CchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001044 885 AWVVNHQT-TSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 927 (1177)
Q Consensus 885 ~~~~~~~~-~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 927 (1177)
+++..... .........+.|.+.++.||+. .+...+..+..
T Consensus 154 iI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~--~L~~~i~~~l~ 195 (206)
T 3mm4_A 154 IIAVSGHDPGSEEARETIQAGMDAFLDKSLN--QLANVIREIES 195 (206)
T ss_dssp EEEEESSCCCHHHHHHHHHHTCSEEEETTCT--THHHHHHHHC-
T ss_pred EEEEECCCCcHHHHHHHHhCCCCEEEcCcHH--HHHHHHHHHHh
Confidence 33333333 3344555667888999999998 77777766554
No 193
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=86.00 E-value=6 Score=36.78 Aligned_cols=120 Identities=12% Similarity=0.137 Sum_probs=70.6
Q ss_pred CCcEEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCC
Q 001044 771 PNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 850 (1177)
Q Consensus 771 ~~~~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 850 (1177)
.+..+++.+.....+..+..++...|.....+.+...+...+. ..+
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~----------------------------------~~~ 51 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLG----------------------------------GFT 51 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHT----------------------------------TCC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHh----------------------------------cCC
Confidence 3456788888888888999999988877665554443332221 123
Q ss_pred ceEEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccC-ChhHHHHHHHHHHhc
Q 001044 851 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPL-YKGKMIQLLETAVRG 928 (1177)
Q Consensus 851 ~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~-~~~~l~~~l~~~~~~ 928 (1177)
..++++|..+.+.++..+-+.++. ......+. +...........+..+.|...++.||+ ....+...+..+..+
T Consensus 52 ~dlvi~d~~l~~~~g~~~~~~l~~---~~~~~~ii-~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~ 126 (130)
T 3eod_A 52 PDLMICDIAMPRMNGLKLLEHIRN---RGDQTPVL-VISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 (130)
T ss_dssp CSEEEECCC-----CHHHHHHHHH---TTCCCCEE-EEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC-
T ss_pred CCEEEEecCCCCCCHHHHHHHHHh---cCCCCCEE-EEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhch
Confidence 568889998888776444333332 22222333 333333334445566788899999999 788888888776643
No 194
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=85.73 E-value=8.3 Score=37.13 Aligned_cols=119 Identities=12% Similarity=0.092 Sum_probs=78.5
Q ss_pred CcEEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCc
Q 001044 772 NTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPV 851 (1177)
Q Consensus 772 ~~~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 851 (1177)
...+++.+.....+..+..++...|.....+.+...+...+.. .++
T Consensus 14 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~----------------------------------~~~ 59 (153)
T 3hv2_A 14 RPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLAS----------------------------------REV 59 (153)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHH----------------------------------SCC
T ss_pred CceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHc----------------------------------CCC
Confidence 4568888888888889999999888776666655544433321 245
Q ss_pred eEEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcC-CcEEEeccCChhHHHHHHHHHHhc
Q 001044 852 YVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREG-QNIVVTKPLYKGKMIQLLETAVRG 928 (1177)
Q Consensus 852 ~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~kP~~~~~l~~~l~~~~~~ 928 (1177)
.++++|..+.+.++..+-+.++. ...... +++..............+.| ...++.||+....+...+..+...
T Consensus 60 dlvi~D~~l~~~~g~~~~~~l~~---~~~~~~-ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~~ 133 (153)
T 3hv2_A 60 DLVISAAHLPQMDGPTLLARIHQ---QYPSTT-RILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEH 133 (153)
T ss_dssp SEEEEESCCSSSCHHHHHHHHHH---HCTTSE-EEEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCcCcHHHHHHHHHh---HCCCCe-EEEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 78899999998877544333332 222222 23333333334444555667 788999999999999988877654
No 195
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=85.49 E-value=9.9 Score=35.37 Aligned_cols=117 Identities=18% Similarity=0.172 Sum_probs=73.8
Q ss_pred EEEEeecChhHHHHHHHHHHhccceee-eccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCce
Q 001044 774 VVVLATVGSMERMIISQWLRKKKVSTL-ETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 852 (1177)
Q Consensus 774 ~v~~~~~~~~~r~~~~~~l~~~g~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 852 (1177)
.+++.+.....+..+..++...|.... .+.....+...+.. .+..
T Consensus 3 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~----------------------------------~~~d 48 (134)
T 3f6c_A 3 NAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVET----------------------------------LKPD 48 (134)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHH----------------------------------HCCS
T ss_pred EEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHh----------------------------------cCCC
Confidence 466777788888888999988886655 44444443333221 1346
Q ss_pred EEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001044 853 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 928 (1177)
Q Consensus 853 ~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 928 (1177)
++++|..+++.++..+-+.++. ......+. +..............+.|...++.||+....+...+..+..+
T Consensus 49 lii~d~~l~~~~g~~~~~~l~~---~~~~~~ii-~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 120 (134)
T 3f6c_A 49 IVIIDVDIPGVNGIQVLETLRK---RQYSGIII-IVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 120 (134)
T ss_dssp EEEEETTCSSSCHHHHHHHHHH---TTCCSEEE-EEECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTT
T ss_pred EEEEecCCCCCChHHHHHHHHh---cCCCCeEE-EEeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 8899999998876443333332 22222333 333333333445556778889999999999999999887654
No 196
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=85.08 E-value=5.3 Score=37.71 Aligned_cols=120 Identities=13% Similarity=0.079 Sum_probs=76.1
Q ss_pred cEEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCce
Q 001044 773 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 852 (1177)
Q Consensus 773 ~~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 852 (1177)
..+++.+.....+..+..++...|.....+.+...+...+.. .++.
T Consensus 7 ~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~----------------------------------~~~d 52 (140)
T 3grc_A 7 PRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVAR----------------------------------RPYA 52 (140)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHH----------------------------------SCCS
T ss_pred CCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHh----------------------------------CCCC
Confidence 457788888888888999999888776666655544433321 2356
Q ss_pred EEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhh-hhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001044 853 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKT-ELSREGQNIVVTKPLYKGKMIQLLETAVRG 928 (1177)
Q Consensus 853 ~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 928 (1177)
++++|..+.+.++..+-+.++..... ....+. +........... ...+.|...++.||+....+...+..+..+
T Consensus 53 lvi~d~~l~~~~g~~~~~~l~~~~~~-~~~~ii-~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~ 127 (140)
T 3grc_A 53 AMTVDLNLPDQDGVSLIRALRRDSRT-RDLAIV-VVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDN 127 (140)
T ss_dssp EEEECSCCSSSCHHHHHHHHHTSGGG-TTCEEE-EECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCccc-CCCCEE-EEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHh
Confidence 88999999988875444444331111 122222 222211111222 455678888999999999999998887754
No 197
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=84.53 E-value=1.4 Score=51.15 Aligned_cols=48 Identities=15% Similarity=0.237 Sum_probs=30.7
Q ss_pred EEEEEeCCCCCChhh--------HhhhhcccccCCC----CCCCCCCccchhHHHHHHHH
Q 001044 684 CFEVDDTGCGIDQSK--------WETVFESFEQGDP----STTRKHGGTGLGLSIVRTLV 731 (1177)
Q Consensus 684 ~i~V~DtG~GI~~e~--------l~~IFe~F~q~d~----s~~~~~~GtGLGLaIvk~IV 731 (1177)
.|+|.|+|.|||.+. .+-+|....-+.. ...-..|=.|.||+.|..+-
T Consensus 87 ~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhagsKf~~~~ykvSgGlhGvGlsvVnAlS 146 (400)
T 1zxm_A 87 LISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFS 146 (400)
T ss_dssp EEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEESCCCGGGCCCCSCCSSCHHHHHHHTE
T ss_pred EEEEEECCCcccCccccccCccchhheeeeecccCCCCCCcccccCCccccceeeeEEec
Confidence 389999999999987 4556663221111 11112234799999998774
No 198
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=84.12 E-value=8.5 Score=37.24 Aligned_cols=120 Identities=8% Similarity=0.069 Sum_probs=77.8
Q ss_pred cEEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCce
Q 001044 773 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 852 (1177)
Q Consensus 773 ~~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 852 (1177)
..+++.+.....+..+..++...|.....+.....+...+. ..++.
T Consensus 8 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~----------------------------------~~~~d 53 (154)
T 3gt7_A 8 GEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLS----------------------------------LTRPD 53 (154)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHT----------------------------------TCCCS
T ss_pred CcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHH----------------------------------hCCCC
Confidence 45778888888888999999988877665555444333221 12457
Q ss_pred EEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001044 853 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 928 (1177)
Q Consensus 853 ~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 928 (1177)
++++|..+++.++..+-+.++...... ... +++..............+.|...++.||+....+...+..+..+
T Consensus 54 lii~D~~l~~~~g~~~~~~lr~~~~~~-~~p-ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~ 127 (154)
T 3gt7_A 54 LIISDVLMPEMDGYALCRWLKGQPDLR-TIP-VILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSG 127 (154)
T ss_dssp EEEEESCCSSSCHHHHHHHHHHSTTTT-TSC-EEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCcC-CCC-EEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 899999999988754444433221111 122 22333333334445566788899999999999999988887654
No 199
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=83.87 E-value=13 Score=34.36 Aligned_cols=118 Identities=11% Similarity=0.061 Sum_probs=75.4
Q ss_pred cEEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCce
Q 001044 773 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 852 (1177)
Q Consensus 773 ~~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 852 (1177)
..+++.+.....+..+..++...|.....+.+...+...+.. .+..
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~----------------------------------~~~d 52 (132)
T 3lte_A 7 KRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLST----------------------------------FEPA 52 (132)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH----------------------------------TCCS
T ss_pred ccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHh----------------------------------cCCC
Confidence 457788888888888889998888766665555444333221 2346
Q ss_pred EEEEEecccccChhHHHHHhhhhhhhhc-cceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001044 853 VVVIDIALLDLSSDLWREQLNSLDIFHR-KAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 928 (1177)
Q Consensus 853 ~v~id~~l~d~~~~~~~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 928 (1177)
++++|..+.+.++..+-+.++. ... ......+.... .........+.|...++.||+....+...+.....+
T Consensus 53 lii~d~~l~~~~g~~~~~~l~~---~~~~~~~~ii~~~~~-~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 125 (132)
T 3lte_A 53 IMTLDLSMPKLDGLDVIRSLRQ---NKVANQPKILVVSGL-DKAKLQQAVTEGADDYLEKPFDNDALLDRIHDLVNE 125 (132)
T ss_dssp EEEEESCBTTBCHHHHHHHHHT---TTCSSCCEEEEECCS-CSHHHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC-
T ss_pred EEEEecCCCCCCHHHHHHHHHh---cCccCCCeEEEEeCC-ChHHHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCC
Confidence 8899999998876444333332 121 12222233322 233445566778899999999999999988876543
No 200
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=83.35 E-value=12 Score=35.28 Aligned_cols=118 Identities=11% Similarity=0.070 Sum_probs=75.7
Q ss_pred cEEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCce
Q 001044 773 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 852 (1177)
Q Consensus 773 ~~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 852 (1177)
..+++.+.....+..+..++...|.....+.....+...+.. ..+..
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~---------------------------------~~~~d 52 (140)
T 3h5i_A 6 KKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSG---------------------------------GWYPD 52 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHT---------------------------------TCCCS
T ss_pred cEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhc---------------------------------CCCCC
Confidence 457788888888888999999888776655554443332211 12457
Q ss_pred EEEEEecccc-cChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001044 853 VVVIDIALLD-LSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 928 (1177)
Q Consensus 853 ~v~id~~l~d-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 928 (1177)
++++|..+++ .++..+-+.++. . ....+..+.. ...........+.|...++.||+....+...+..+...
T Consensus 53 lvi~D~~l~~~~~g~~~~~~l~~---~-~~~~ii~ls~-~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~ 124 (140)
T 3h5i_A 53 LILMDIELGEGMDGVQTALAIQQ---I-SELPVVFLTA-HTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRL 124 (140)
T ss_dssp EEEEESSCSSSCCHHHHHHHHHH---H-CCCCEEEEES-SSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHHH
T ss_pred EEEEeccCCCCCCHHHHHHHHHh---C-CCCCEEEEEC-CCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 8899999885 776443333332 2 2223333333 33333444556678888999999999999988877653
No 201
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=83.24 E-value=8.6 Score=36.03 Aligned_cols=117 Identities=12% Similarity=0.129 Sum_probs=76.1
Q ss_pred EEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCceE
Q 001044 774 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 853 (1177)
Q Consensus 774 ~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 853 (1177)
.+++.+.....+..+..++...+.....+.+...+...+.. .+..+
T Consensus 9 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~----------------------------------~~~dl 54 (137)
T 3hdg_A 9 KILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGL----------------------------------HAPDV 54 (137)
T ss_dssp CEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHH----------------------------------HCCSE
T ss_pred EEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhc----------------------------------cCCCE
Confidence 46777888888888888888877666666555544433322 13468
Q ss_pred EEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001044 854 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 928 (1177)
Q Consensus 854 v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 928 (1177)
+++|..+.+.++..+-+.++. ...... +++..............+.|...++.||+....+...+..+..+
T Consensus 55 vi~d~~l~~~~g~~~~~~l~~---~~~~~~-ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 125 (137)
T 3hdg_A 55 IITDIRMPKLGGLEMLDRIKA---GGAKPY-VIVISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHI 125 (137)
T ss_dssp EEECSSCSSSCHHHHHHHHHH---TTCCCE-EEECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh---cCCCCc-EEEEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHH
Confidence 899999988876444333332 222222 33333333334445566788889999999999999998887654
No 202
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=83.11 E-value=14 Score=33.84 Aligned_cols=115 Identities=10% Similarity=0.133 Sum_probs=70.2
Q ss_pred EEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCceE
Q 001044 774 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 853 (1177)
Q Consensus 774 ~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 853 (1177)
.+++.+.....+..+...+...|.....+.+...+...++. .+..+
T Consensus 5 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~----------------------------------~~~dl 50 (124)
T 1srr_A 5 KILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTK----------------------------------ERPDL 50 (124)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH----------------------------------HCCSE
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhc----------------------------------cCCCE
Confidence 46677777777888888888777665544443333322211 13468
Q ss_pred EEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHH
Q 001044 854 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAV 926 (1177)
Q Consensus 854 v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~ 926 (1177)
+++|..+++.++..+-+.++ .......+.++- ............+.|...++.||+....+...+....
T Consensus 51 vl~D~~l~~~~g~~~~~~l~---~~~~~~~ii~~s-~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (124)
T 1srr_A 51 VLLDMKIPGMDGIEILKRMK---VIDENIRVIIMT-AYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYL 119 (124)
T ss_dssp EEEESCCTTCCHHHHHHHHH---HHCTTCEEEEEE-SSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHS
T ss_pred EEEecCCCCCCHHHHHHHHH---HhCCCCCEEEEE-ccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHh
Confidence 89999998887643333332 222223333333 3333334445556788889999999999988887654
No 203
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=82.75 E-value=17 Score=33.45 Aligned_cols=117 Identities=15% Similarity=0.083 Sum_probs=72.0
Q ss_pred cEEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCce
Q 001044 773 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 852 (1177)
Q Consensus 773 ~~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 852 (1177)
..+++.+.....+..+..++...|.....+.....+...+ ...+..
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~----------------------------------~~~~~d 49 (126)
T 1dbw_A 4 YTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFA----------------------------------PDVRNG 49 (126)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHG----------------------------------GGCCSE
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHH----------------------------------hcCCCC
Confidence 3567778888888888888887776554443332222111 012457
Q ss_pred EEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001044 853 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 927 (1177)
Q Consensus 853 ~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 927 (1177)
++++|..++++++..+-+.++ .......+..+ .............+.|...++.||+....+...+..+..
T Consensus 50 lvi~D~~l~~~~g~~~~~~l~---~~~~~~~ii~~-s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 120 (126)
T 1dbw_A 50 VLVTDLRMPDMSGVELLRNLG---DLKINIPSIVI-TGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASE 120 (126)
T ss_dssp EEEEECCSTTSCHHHHHHHHH---HTTCCCCEEEE-ECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCCHHHHHHHHH---hcCCCCCEEEE-ECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHH
Confidence 899999999887644333332 22222233333 333333444556677888999999999999988877654
No 204
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=82.55 E-value=11 Score=34.62 Aligned_cols=117 Identities=14% Similarity=0.095 Sum_probs=72.7
Q ss_pred cEEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCce
Q 001044 773 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 852 (1177)
Q Consensus 773 ~~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 852 (1177)
..+++.+.....+..+..++...|.....+.+...+...+.. .+..
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~----------------------------------~~~d 49 (127)
T 3i42_A 4 QQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMST----------------------------------RGYD 49 (127)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHH----------------------------------SCCS
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHh----------------------------------cCCC
Confidence 356778888888888999999988876666655544433321 2357
Q ss_pred EEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHH
Q 001044 853 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAV 926 (1177)
Q Consensus 853 ~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~ 926 (1177)
++++|..+.+.++..+-+.++.... .....+..+..... ... ......|.+.++.||+....+...+....
T Consensus 50 lii~D~~l~~~~g~~~~~~l~~~~~-~~~~~ii~~s~~~~-~~~-~~~~~~g~~~~l~KP~~~~~L~~~i~~~~ 120 (127)
T 3i42_A 50 AVFIDLNLPDTSGLALVKQLRALPM-EKTSKFVAVSGFAK-NDL-GKEACELFDFYLEKPIDIASLEPILQSIE 120 (127)
T ss_dssp EEEEESBCSSSBHHHHHHHHHHSCC-SSCCEEEEEECC-C-TTC-CHHHHHHCSEEEESSCCHHHHHHHHHHHC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhhhc-cCCCCEEEEECCcc-hhH-HHHHHHhhHHheeCCCCHHHHHHHHHHhh
Confidence 8899999998877544333332110 12222333333222 222 34455667889999999999988876643
No 205
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=82.44 E-value=6.2 Score=42.84 Aligned_cols=97 Identities=18% Similarity=0.190 Sum_probs=65.2
Q ss_pred HHHHHhhcCCEEE--EEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCH-----HHHHHH
Q 001044 1037 ACKILEKVGATVS--VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDG-----YEATIE 1109 (1177)
Q Consensus 1037 l~~~L~~~G~~v~--~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~mdG-----~e~~r~ 1109 (1177)
..+.|.+.||.|. +..|...|-. +... .++.| |++-.|.-.| .++++.
T Consensus 116 aa~~L~k~Gf~Vlpy~~~D~~~ak~-l~~~-----------------------G~~aV-mPlg~pIGsG~Gi~~~~~L~~ 170 (268)
T 2htm_A 116 AAERLIEEDFLVLPYMGPDLVLAKR-LAAL-----------------------GTATV-MPLAAPIGSGWGVRTRALLEL 170 (268)
T ss_dssp HHHHHHHTTCEECCEECSCHHHHHH-HHHH-----------------------TCSCB-EEBSSSTTTCCCSTTHHHHHH
T ss_pred HHHHHHHCCCEEeeccCCCHHHHHH-HHhc-----------------------CCCEE-EecCccCcCCcccCCHHHHHH
Confidence 3455666799977 4455544433 3322 46766 8877776555 456788
Q ss_pred HHhcccccCCCC-cceEEEecCCCHHHHHHHHHcCCCEEEE-----CCCCHHHHHHHHHH
Q 001044 1110 IRKSESEHGARN-IPIVALTAHAMNADEKKCLGVGMNAYLT-----KPIDSERMVSTILR 1163 (1177)
Q Consensus 1110 IR~~~~~~~~~~-ipIIalTa~~~~~~~~~~l~aG~d~yL~-----KP~~~~~L~~~I~~ 1163 (1177)
|++.. .+ +|||+=-+-...+|...+++.|+|+.+. |--++..+..++..
T Consensus 171 i~~~~-----~~~vPVI~~GGI~tpsDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~ 225 (268)
T 2htm_A 171 FAREK-----ASLPPVVVDAGLGLPSHAAEVMELGLDAVLVNTAIAEAQDPPAMAEAFRL 225 (268)
T ss_dssp HHHTT-----TTSSCBEEESCCCSHHHHHHHHHTTCCEEEESHHHHTSSSHHHHHHHHHH
T ss_pred HHHhc-----CCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHH
Confidence 87631 34 8999877788999999999999999884 54445555555544
No 206
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=82.42 E-value=15 Score=33.42 Aligned_cols=118 Identities=16% Similarity=0.182 Sum_probs=68.2
Q ss_pred EEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCceE
Q 001044 774 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 853 (1177)
Q Consensus 774 ~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 853 (1177)
.+++.+.....+..+...+...|.....+.+...+...+.. .+..+
T Consensus 3 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~----------------------------------~~~dl 48 (124)
T 1mb3_A 3 KVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARE----------------------------------NKPDL 48 (124)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHH----------------------------------HCCSE
T ss_pred EEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhc----------------------------------CCCCE
Confidence 46677777777888888888777665544433332222111 13468
Q ss_pred EEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001044 854 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 927 (1177)
Q Consensus 854 v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 927 (1177)
+++|..++++++..+-+.++..... ....+.+ ..............+.|...++.||+....+...+..+..
T Consensus 49 vi~D~~l~~~~g~~~~~~l~~~~~~-~~~~ii~-~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1mb3_A 49 ILMDIQLPEISGLEVTKWLKEDDDL-AHIPVVA-VTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLE 120 (124)
T ss_dssp EEEESBCSSSBHHHHHHHHHHSTTT-TTSCEEE-EC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHS
T ss_pred EEEeCCCCCCCHHHHHHHHHcCccc-cCCcEEE-EECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 8999999988775433333321111 1122222 2222223334445567888999999999999888876653
No 207
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=82.09 E-value=17 Score=34.13 Aligned_cols=120 Identities=12% Similarity=0.056 Sum_probs=74.3
Q ss_pred CcEEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCc
Q 001044 772 NTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPV 851 (1177)
Q Consensus 772 ~~~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 851 (1177)
...+++.+.....+..+...+...|.....+.....+...++ ..+.
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~----------------------------------~~~~ 52 (142)
T 3cg4_A 7 KGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLK----------------------------------KGFS 52 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH----------------------------------TCCC
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHH----------------------------------hcCC
Confidence 345777888888888888888888876665555444433321 1235
Q ss_pred eEEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001044 852 YVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 927 (1177)
Q Consensus 852 ~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 927 (1177)
.++++|..+.+.++..+-+.++... ......+.++.. ...........+.|...++.||+....+...+..+..
T Consensus 53 dlii~d~~l~~~~g~~~~~~l~~~~-~~~~~pii~~s~-~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 126 (142)
T 3cg4_A 53 GVVLLDIMMPGMDGWDTIRAILDNS-LEQGIAIVMLTA-KNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMG 126 (142)
T ss_dssp EEEEEESCCSSSCHHHHHHHHHHTT-CCTTEEEEEEEC-TTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhhc-ccCCCCEEEEEC-CCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHH
Confidence 7899999998877643333332210 112222333332 2223333445567788899999999999988887664
No 208
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=82.08 E-value=13 Score=34.50 Aligned_cols=119 Identities=16% Similarity=0.121 Sum_probs=73.0
Q ss_pred EEEEeecChhHHHHHHHHHHhccce-eeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCce
Q 001044 774 VVVLATVGSMERMIISQWLRKKKVS-TLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 852 (1177)
Q Consensus 774 ~v~~~~~~~~~r~~~~~~l~~~g~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 852 (1177)
.+++.+.....+..+...+.+.|.. ...+.........+. ...+..
T Consensus 7 ~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~---------------------------------~~~~~d 53 (129)
T 3h1g_A 7 KLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLD---------------------------------ANADTK 53 (129)
T ss_dssp CEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHH---------------------------------HCTTCC
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHH---------------------------------hCCCCC
Confidence 4677788888888888888887763 333333222221111 012346
Q ss_pred EEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001044 853 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 927 (1177)
Q Consensus 853 ~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 927 (1177)
++++|..++++++..+-+.++..... ....+.+..............+.|.+.++.||+....+...+..+..
T Consensus 54 lvi~D~~~p~~~g~~~~~~lr~~~~~--~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~ 126 (129)
T 3h1g_A 54 VLITDWNMPEMNGLDLVKKVRSDSRF--KEIPIIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLG 126 (129)
T ss_dssp EEEECSCCSSSCHHHHHHHHHTSTTC--TTCCEEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCC--CCCeEEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhc
Confidence 88899999998875444444321111 11223333333344444556678889999999999999998887654
No 209
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=82.02 E-value=6.6 Score=41.91 Aligned_cols=84 Identities=8% Similarity=0.005 Sum_probs=60.8
Q ss_pred HHHHHHHhhcCCEEE-EEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCC------CCCCCHHHHH
Q 001044 1035 IVACKILEKVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ------MPKMDGYEAT 1107 (1177)
Q Consensus 1035 ~~l~~~L~~~G~~v~-~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~------MP~mdG~e~~ 1107 (1177)
.-+...+++.|..+. .+.+.++|..+.+. .+|+|..-.. .+...+++++
T Consensus 119 ~~~i~~~~~~g~~v~~~v~t~eea~~a~~~------------------------Gad~Ig~~~~g~t~~~~~~~~~~~li 174 (229)
T 3q58_A 119 DSLLTRIRLHGLLAMADCSTVNEGISCHQK------------------------GIEFIGTTLSGYTGPITPVEPDLAMV 174 (229)
T ss_dssp HHHHHHHHHTTCEEEEECSSHHHHHHHHHT------------------------TCSEEECTTTTSSSSCCCSSCCHHHH
T ss_pred HHHHHHHHHCCCEEEEecCCHHHHHHHHhC------------------------CCCEEEecCccCCCCCcCCCCCHHHH
Confidence 334445566687665 46788888776642 5788753211 2334568999
Q ss_pred HHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1108 IEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1108 r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
+++++. ++|||+-.+-.+.++..+++++|+|+++.
T Consensus 175 ~~l~~~-------~ipvIA~GGI~t~~d~~~~~~~GadgV~V 209 (229)
T 3q58_A 175 TQLSHA-------GCRVIAEGRYNTPALAANAIEHGAWAVTV 209 (229)
T ss_dssp HHHHTT-------TCCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHc-------CCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 999852 48999999999999999999999999985
No 210
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=81.79 E-value=17 Score=34.26 Aligned_cols=120 Identities=15% Similarity=0.101 Sum_probs=77.5
Q ss_pred EEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCceE
Q 001044 774 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 853 (1177)
Q Consensus 774 ~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 853 (1177)
.+++.+.....+..+...+...|.....+.....+...+.. ...++.+
T Consensus 5 ~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~--------------------------------~~~~~dl 52 (143)
T 3jte_A 5 KILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTE--------------------------------NCNSIDV 52 (143)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--------------------------------TTTTCCE
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHh--------------------------------CCCCCCE
Confidence 46777788888888888998888766666555444433321 1134578
Q ss_pred EEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHhcc
Q 001044 854 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGK 929 (1177)
Q Consensus 854 v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~~ 929 (1177)
+++|..+.+.++..+-+.++. ......+ ++..............+.|...++.||+....+...+..+..+.
T Consensus 53 vi~d~~l~~~~g~~~~~~l~~---~~~~~~i-i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~ 124 (143)
T 3jte_A 53 VITDMKMPKLSGMDILREIKK---ITPHMAV-IILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINRK 124 (143)
T ss_dssp EEEESCCSSSCHHHHHHHHHH---HCTTCEE-EEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCcHHHHHHHHHH---hCCCCeE-EEEECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHHH
Confidence 899999998877444333332 2222233 33333333344455667788899999999999999988876543
No 211
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=81.69 E-value=2.2 Score=49.78 Aligned_cols=50 Identities=18% Similarity=0.329 Sum_probs=31.7
Q ss_pred EEEEEeCCCCCChhhHhh--------hhcccccCCC----CCCCCCCccchhHHHHHHHHHH
Q 001044 684 CFEVDDTGCGIDQSKWET--------VFESFEQGDP----STTRKHGGTGLGLSIVRTLVNK 733 (1177)
Q Consensus 684 ~i~V~DtG~GI~~e~l~~--------IFe~F~q~d~----s~~~~~~GtGLGLaIvk~IVe~ 733 (1177)
.|+|.|+|.|||.+..+. ||....-+.. +.....|=.|.|.+.|.-|-+.
T Consensus 99 sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaGgKfd~~~ykvSGGLhGVG~SvVNALS~~ 160 (418)
T 1pvg_A 99 TIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTE 160 (418)
T ss_dssp EEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCCTTSCCCCSCCSSCHHHHHHHTEEE
T ss_pred EEEEEECCCcccCcccccCCcccceEEEEEEecccccCCCceeccCCccceeeeeeeeccce
Confidence 378999999999887443 6654332211 1111223479999999877654
No 212
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=81.32 E-value=20 Score=32.50 Aligned_cols=114 Identities=13% Similarity=0.180 Sum_probs=68.2
Q ss_pred EEEEeecChhHHHHHHHHHHhccce-eeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCce
Q 001044 774 VVVLATVGSMERMIISQWLRKKKVS-TLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 852 (1177)
Q Consensus 774 ~v~~~~~~~~~r~~~~~~l~~~g~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 852 (1177)
.+++.+.....+..+...+...|.. ...+.+...+...+.. .+..
T Consensus 4 ~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~----------------------------------~~~d 49 (120)
T 1tmy_A 4 RVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKE----------------------------------LKPD 49 (120)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----------------------------------HCCS
T ss_pred eEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHh----------------------------------cCCC
Confidence 4666777777788888888877776 3334443333322211 1246
Q ss_pred EEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHH
Q 001044 853 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETA 925 (1177)
Q Consensus 853 ~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~ 925 (1177)
++++|..+++.++..+-+.++ .......+.++ .............+.|...++.||+....+...+..+
T Consensus 50 lil~D~~l~~~~g~~~~~~l~---~~~~~~~ii~~-s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~ 118 (120)
T 1tmy_A 50 IVTMDITMPEMNGIDAIKEIM---KIDPNAKIIVC-SAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKV 118 (120)
T ss_dssp EEEEECSCGGGCHHHHHHHHH---HHCTTCCEEEE-ECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHH
T ss_pred EEEEeCCCCCCcHHHHHHHHH---hhCCCCeEEEE-eCCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHH
Confidence 888999999887644333332 22222233333 3333333445556678889999999999888877653
No 213
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=81.16 E-value=19 Score=33.59 Aligned_cols=118 Identities=12% Similarity=0.061 Sum_probs=74.8
Q ss_pred CcEEEEeecChhHHHHHHHHHHhccceee-eccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCC
Q 001044 772 NTVVVLATVGSMERMIISQWLRKKKVSTL-ETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 850 (1177)
Q Consensus 772 ~~~v~~~~~~~~~r~~~~~~l~~~g~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 850 (1177)
...+++.+.....+..+...+...|.... .+.....+...+.. .+
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~----------------------------------~~ 54 (140)
T 3cg0_A 9 LPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPD----------------------------------LR 54 (140)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH----------------------------------HC
T ss_pred CceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHh----------------------------------CC
Confidence 34577888888888888899888887766 35554444433321 13
Q ss_pred ceEEEEEeccc-ccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001044 851 VYVVVIDIALL-DLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 928 (1177)
Q Consensus 851 ~~~v~id~~l~-d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 928 (1177)
..++++|..+. +.++..+-+.++. . ....+.++ .............+.|...++.||+....+...+..+..+
T Consensus 55 ~dlii~d~~~~~~~~g~~~~~~l~~---~-~~~~ii~l-s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 128 (140)
T 3cg0_A 55 PDIALVDIMLCGALDGVETAARLAA---G-CNLPIIFI-TSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHK 128 (140)
T ss_dssp CSEEEEESSCCSSSCHHHHHHHHHH---H-SCCCEEEE-ECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCCCCCHHHHHHHHHh---C-CCCCEEEE-ecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 46888998887 6765433333322 2 22223333 3233333444556678889999999999999988877654
No 214
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=80.92 E-value=0.68 Score=50.23 Aligned_cols=56 Identities=20% Similarity=0.352 Sum_probs=34.3
Q ss_pred EEEEEeCCCCCChhhHhhhhcc--------c---ccCCCCCCCCCCccchhHHHHHHHHHHcCCEEEEEEe
Q 001044 684 CFEVDDTGCGIDQSKWETVFES--------F---EQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKK 743 (1177)
Q Consensus 684 ~i~V~DtG~GI~~e~l~~IFe~--------F---~q~d~s~~~~~~GtGLGLaIvk~IVe~~GG~I~v~S~ 743 (1177)
.|+|.|||+||+++++..-+-. | ++........-|-.|+|+.-|-.+ .-++.|.|.
T Consensus 131 tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~~~d~~~IGqFGVGFySaFmV----AdkV~V~Sk 197 (272)
T 3ied_A 131 TLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNLIGQFGVGFYSSFLV----SNRVEVYTK 197 (272)
T ss_dssp EEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTSSCTTCGGGSCCGGGGGGGT----EEEEEEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhcccccccccCcccceeheeecc----CCEEEEEEc
Confidence 4789999999999999865522 2 111111122346789998875433 345555555
No 215
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=80.58 E-value=22 Score=33.90 Aligned_cols=119 Identities=10% Similarity=0.121 Sum_probs=76.4
Q ss_pred CcEEEEeecChhHHHHHHHHHHhccce--eeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccC
Q 001044 772 NTVVVLATVGSMERMIISQWLRKKKVS--TLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALID 849 (1177)
Q Consensus 772 ~~~v~~~~~~~~~r~~~~~~l~~~g~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (1177)
+..+++.+.....+..+...+...|.. ...+.+...+...+.. .
T Consensus 15 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~----------------------------------~ 60 (152)
T 3eul_A 15 KVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKA----------------------------------H 60 (152)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHH----------------------------------H
T ss_pred eEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHh----------------------------------c
Confidence 456888888888888889998888732 3334444443333221 1
Q ss_pred CceEEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001044 850 PVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 928 (1177)
Q Consensus 850 p~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 928 (1177)
+..++++|..+.+.++..+-+.++. ...... +++..............+.|...++.||+....+...+..+..+
T Consensus 61 ~~dlii~d~~l~~~~g~~~~~~l~~---~~~~~~-ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 135 (152)
T 3eul_A 61 LPDVALLDYRMPGMDGAQVAAAVRS---YELPTR-VLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKG 135 (152)
T ss_dssp CCSEEEEETTCSSSCHHHHHHHHHH---TTCSCE-EEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh---cCCCCe-EEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcC
Confidence 3468899999988876443333322 222222 33333333344445566788899999999999999998887764
No 216
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=80.48 E-value=6.7 Score=37.05 Aligned_cols=120 Identities=10% Similarity=0.079 Sum_probs=75.9
Q ss_pred cEEEEeecChhHHHHHHHHHHh-ccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhcc-CC
Q 001044 773 TVVVLATVGSMERMIISQWLRK-KKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALI-DP 850 (1177)
Q Consensus 773 ~~v~~~~~~~~~r~~~~~~l~~-~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p 850 (1177)
..+++.+.....+..+..++.. .|.....+.+...+...+ .. .+
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l----------------------------------~~~~~ 50 (140)
T 3lua_A 5 GTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIF----------------------------------KDLDS 50 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTT----------------------------------TTCCC
T ss_pred CeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHH----------------------------------hcCCC
Confidence 3577888888888889999988 787766555544332111 01 34
Q ss_pred ceEEEEEeccc-ccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001044 851 VYVVVIDIALL-DLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 928 (1177)
Q Consensus 851 ~~~v~id~~l~-d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 928 (1177)
..++++|..++ +.++..+-+.++... ......+ ++..............+.|...++.||+....+...+..+..+
T Consensus 51 ~dlvi~D~~l~~~~~g~~~~~~l~~~~-~~~~~~i-i~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (140)
T 3lua_A 51 ITLIIMDIAFPVEKEGLEVLSAIRNNS-RTANTPV-IIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKI 127 (140)
T ss_dssp CSEEEECSCSSSHHHHHHHHHHHHHSG-GGTTCCE-EEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC
T ss_pred CcEEEEeCCCCCCCcHHHHHHHHHhCc-ccCCCCE-EEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 57888998888 766543333333211 1122222 3333333334455566788899999999999999999887754
No 217
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=80.47 E-value=2.4 Score=44.37 Aligned_cols=14 Identities=36% Similarity=0.551 Sum_probs=12.7
Q ss_pred EEEEEeCCCCCChh
Q 001044 684 CFEVDDTGCGIDQS 697 (1177)
Q Consensus 684 ~i~V~DtG~GI~~e 697 (1177)
.|+|.|+|.|||.+
T Consensus 64 ~i~V~DnG~Gip~~ 77 (198)
T 3ttz_A 64 WIKVTDNGRGIPVD 77 (198)
T ss_dssp EEEEEECSSCCCCS
T ss_pred eEEEEECCCCcccc
Confidence 48999999999987
No 218
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=80.17 E-value=20 Score=32.52 Aligned_cols=116 Identities=13% Similarity=0.168 Sum_probs=71.4
Q ss_pred EEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCceE
Q 001044 774 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 853 (1177)
Q Consensus 774 ~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 853 (1177)
.+++.+.....+..+...+...|.....+.+...+...+.. .+..+
T Consensus 7 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~----------------------------------~~~dl 52 (127)
T 2gkg_A 7 KILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRR----------------------------------DRPDL 52 (127)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHH----------------------------------HCCSE
T ss_pred eEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHh----------------------------------cCCCE
Confidence 46677777777888888888888766655554444333221 13467
Q ss_pred EEEEeccc-ccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHH
Q 001044 854 VVIDIALL-DLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAV 926 (1177)
Q Consensus 854 v~id~~l~-d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~ 926 (1177)
+++|..+. +.++..+-+.++..... ....+.++ .. ..........+.|...++.||+....+...+....
T Consensus 53 vi~d~~~~~~~~g~~~~~~l~~~~~~-~~~~ii~~-~~-~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~ 123 (127)
T 2gkg_A 53 VVLAVDLSAGQNGYLICGKLKKDDDL-KNVPIVII-GN-PDGFAQHRKLKAHADEYVAKPVDADQLVERAGALI 123 (127)
T ss_dssp EEEESBCGGGCBHHHHHHHHHHSTTT-TTSCEEEE-EC-GGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCCHHHHHHHHhcCccc-cCCCEEEE-ec-CCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHH
Confidence 88899888 77664433333322111 12223333 32 23334445667788889999999999988887654
No 219
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=80.13 E-value=22 Score=33.15 Aligned_cols=120 Identities=11% Similarity=0.079 Sum_probs=75.3
Q ss_pred cEEEEeecChhHHHHHHHHHHh-ccce-eeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCC
Q 001044 773 TVVVLATVGSMERMIISQWLRK-KKVS-TLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 850 (1177)
Q Consensus 773 ~~v~~~~~~~~~r~~~~~~l~~-~g~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 850 (1177)
..+++.+.....+..+...+.. .|.. ...+.....+...++. .+
T Consensus 9 ~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~----------------------------------~~ 54 (143)
T 3cnb_A 9 FSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHT----------------------------------VK 54 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHH----------------------------------TC
T ss_pred ceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHh----------------------------------cC
Confidence 4577788888888888888888 7776 5555554444333221 23
Q ss_pred ceEEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001044 851 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 928 (1177)
Q Consensus 851 ~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 928 (1177)
..++++|..+.+.++..+-+.++... ...... +++..............+.|...++.||+....+...+..+..+
T Consensus 55 ~dlii~d~~l~~~~g~~~~~~l~~~~-~~~~~~-ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 130 (143)
T 3cnb_A 55 PDVVMLDLMMVGMDGFSICHRIKSTP-ATANII-VIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQ 130 (143)
T ss_dssp CSEEEEETTCTTSCHHHHHHHHHTST-TTTTSE-EEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHT
T ss_pred CCEEEEecccCCCcHHHHHHHHHhCc-cccCCc-EEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Confidence 46888999888877644333332211 111222 23333333334445566788889999999999999988887653
No 220
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=80.09 E-value=24 Score=31.95 Aligned_cols=115 Identities=16% Similarity=0.196 Sum_probs=69.5
Q ss_pred EEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCceE
Q 001044 774 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 853 (1177)
Q Consensus 774 ~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 853 (1177)
.+++.+.....+..+..++...|.....+.....+...+. ..+..+
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~----------------------------------~~~~dl 49 (122)
T 1zgz_A 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQ----------------------------------NQSVDL 49 (122)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH----------------------------------HSCCSE
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHh----------------------------------cCCCCE
Confidence 4667777777788888888877765554443333222211 123468
Q ss_pred EEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001044 854 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 927 (1177)
Q Consensus 854 v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 927 (1177)
+++|..+++.++..+-+.++. .....+.++ .............+.|...++.||+....+...+.....
T Consensus 50 vi~d~~l~~~~g~~~~~~l~~----~~~~~ii~~-s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 118 (122)
T 1zgz_A 50 ILLDINLPDENGLMLTRALRE----RSTVGIILV-TGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLW 118 (122)
T ss_dssp EEEESCCSSSCHHHHHHHHHT----TCCCEEEEE-ESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCChHHHHHHHHh----cCCCCEEEE-ECCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHHH
Confidence 889999998876443333332 122223333 333333334455567888999999999999888776543
No 221
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=79.99 E-value=20 Score=33.27 Aligned_cols=116 Identities=9% Similarity=0.031 Sum_probs=72.5
Q ss_pred EEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCceE
Q 001044 774 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 853 (1177)
Q Consensus 774 ~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 853 (1177)
.+++.+.....+..+...+...|.....+.+...+...+.. .+..+
T Consensus 5 ~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~----------------------------------~~~dl 50 (132)
T 3crn_A 5 RILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIEN----------------------------------EFFNL 50 (132)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH----------------------------------SCCSE
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhc----------------------------------CCCCE
Confidence 46777778888888888888777765555444433322211 23468
Q ss_pred EEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001044 854 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 927 (1177)
Q Consensus 854 v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 927 (1177)
+++|..++++++..+-+.++ .......+. +..............+.|...++.||+....+...+..+..
T Consensus 51 vl~D~~l~~~~g~~~~~~l~---~~~~~~~ii-~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 120 (132)
T 3crn_A 51 ALFXIKLPDMEGTELLEKAH---KLRPGMKKI-MVTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLD 120 (132)
T ss_dssp EEECSBCSSSBHHHHHHHHH---HHCTTSEEE-EEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEecCCCCCchHHHHHHHH---hhCCCCcEE-EEeccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHh
Confidence 89999999887644333332 222222233 33333333444555678889999999999999988877654
No 222
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=79.95 E-value=21 Score=33.24 Aligned_cols=116 Identities=12% Similarity=0.096 Sum_probs=69.8
Q ss_pred EEEEeecChhHHHHHHHHHHhcc--ceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCc
Q 001044 774 VVVLATVGSMERMIISQWLRKKK--VSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPV 851 (1177)
Q Consensus 774 ~v~~~~~~~~~r~~~~~~l~~~g--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 851 (1177)
.+++.+.....+..+...+...+ .....+.+...+...+.. .+.
T Consensus 5 ~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~----------------------------------~~~ 50 (133)
T 3b2n_A 5 SLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEE----------------------------------YNP 50 (133)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHH----------------------------------HCC
T ss_pred EEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhh----------------------------------cCC
Confidence 46677777778888888887765 333333333333222211 124
Q ss_pred eEEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001044 852 YVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 927 (1177)
Q Consensus 852 ~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 927 (1177)
.++++|..++++++..+-+.++ .......+. +..............+.|...++.||+....+...+..+..
T Consensus 51 dlvilD~~lp~~~g~~~~~~l~---~~~~~~~ii-~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~ 122 (133)
T 3b2n_A 51 NVVILDIEMPGMTGLEVLAEIR---KKHLNIKVI-IVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNN 122 (133)
T ss_dssp SEEEECSSCSSSCHHHHHHHHH---HTTCSCEEE-EEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC
T ss_pred CEEEEecCCCCCCHHHHHHHHH---HHCCCCcEE-EEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHc
Confidence 6888999999887644333332 222222333 33333333444555668889999999999999998887654
No 223
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=79.87 E-value=17 Score=34.31 Aligned_cols=120 Identities=8% Similarity=0.006 Sum_probs=75.1
Q ss_pred cEEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCce
Q 001044 773 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 852 (1177)
Q Consensus 773 ~~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 852 (1177)
..+++.+.....+..+...+...|..+..+.....+...+.. .+..
T Consensus 9 ~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~----------------------------------~~~d 54 (147)
T 2zay_A 9 WRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVK----------------------------------THPH 54 (147)
T ss_dssp EEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHH----------------------------------HCCS
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHc----------------------------------CCCC
Confidence 456777777777888888888888776665555544433322 1346
Q ss_pred EEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001044 853 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 928 (1177)
Q Consensus 853 ~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 928 (1177)
++++|..+.+.++..+-+.++... ......+.++ .............+.|...++.||+....+...+..+...
T Consensus 55 lii~d~~l~~~~g~~~~~~l~~~~-~~~~~pii~l-s~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~ 128 (147)
T 2zay_A 55 LIITEANMPKISGMDLFNSLKKNP-QTASIPVIAL-SGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKL 128 (147)
T ss_dssp EEEEESCCSSSCHHHHHHHHHTST-TTTTSCEEEE-ESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCCCHHHHHHHHHcCc-ccCCCCEEEE-eCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 888999988877644333333211 1122223333 3333334445556788889999999999999888876653
No 224
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=79.60 E-value=2.5 Score=49.04 Aligned_cols=49 Identities=31% Similarity=0.462 Sum_probs=25.5
Q ss_pred EEEEeCCCCCChhhH--------hhhhcccccCCC----CCCCCCCccchhHHHHHHHHHH
Q 001044 685 FEVDDTGCGIDQSKW--------ETVFESFEQGDP----STTRKHGGTGLGLSIVRTLVNK 733 (1177)
Q Consensus 685 i~V~DtG~GI~~e~l--------~~IFe~F~q~d~----s~~~~~~GtGLGLaIvk~IVe~ 733 (1177)
|+|.|+|.|||.+.. +-+|....-+.. ......|=.|.|++.|.-+-+.
T Consensus 84 I~V~DnGrGIPv~~h~~~~~~~~e~i~t~lhaggKfd~~~ykvSgGlhGvG~svVNALS~~ 144 (408)
T 3lnu_A 84 CEVSDDGRGMPVDIHPEEKIPGVELILTRLHAGGKFNNRNYTFSGGLHGVGVSVVNALSTK 144 (408)
T ss_dssp EEEEECSSCCCCSBCTTTCSBHHHHHHHCC--------------------CHHHHHHTEEE
T ss_pred EEEEEcCCCCCcccccccCCcchheEEEecccCCCcCCCceeecCCccccccceehhccCe
Confidence 899999999999874 455633222111 1111123379999999887644
No 225
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=79.57 E-value=17 Score=34.75 Aligned_cols=118 Identities=20% Similarity=0.166 Sum_probs=74.8
Q ss_pred cEEEEeecChhHHHHHHHHHHhcc--ceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCC
Q 001044 773 TVVVLATVGSMERMIISQWLRKKK--VSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 850 (1177)
Q Consensus 773 ~~v~~~~~~~~~r~~~~~~l~~~g--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 850 (1177)
..+++.+.....+..+..++...+ .....+.+...+...+. ..+
T Consensus 21 ~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~----------------------------------~~~ 66 (150)
T 4e7p_A 21 MKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLE----------------------------------KES 66 (150)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHT----------------------------------TSC
T ss_pred cEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhh----------------------------------ccC
Confidence 357778888888888888888776 44444444443332221 123
Q ss_pred ceEEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001044 851 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 928 (1177)
Q Consensus 851 ~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 928 (1177)
..++++|..+.+.++..+-+.++. ......+ ++..............+.|...++.||+....+...+..+..+
T Consensus 67 ~dlii~D~~l~~~~g~~~~~~l~~---~~~~~~i-i~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 140 (150)
T 4e7p_A 67 VDIAILDVEMPVKTGLEVLEWIRS---EKLETKV-VVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEG 140 (150)
T ss_dssp CSEEEECSSCSSSCHHHHHHHHHH---TTCSCEE-EEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHH---hCCCCeE-EEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcC
Confidence 578899999988876443333322 2222333 3333333334455666788899999999999999998887654
No 226
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=79.53 E-value=15 Score=34.42 Aligned_cols=122 Identities=11% Similarity=0.127 Sum_probs=73.0
Q ss_pred EEEEeecChhHHHHHHHHHHhccce-eeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCce
Q 001044 774 VVVLATVGSMERMIISQWLRKKKVS-TLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 852 (1177)
Q Consensus 774 ~v~~~~~~~~~r~~~~~~l~~~g~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 852 (1177)
.+++.+.....+..+...+...|.. ...+.+...+...+... .....++.
T Consensus 4 ~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~-----------------------------~~~~~~~d 54 (133)
T 2r25_B 4 KILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKEL-----------------------------TSKGENYN 54 (133)
T ss_dssp CEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHH-----------------------------HHHTCCCS
T ss_pred eEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHH-----------------------------HhcCCCCC
Confidence 3677788888888888888877753 33344333333222211 01113457
Q ss_pred EEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001044 853 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 927 (1177)
Q Consensus 853 ~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 927 (1177)
++++|+.++++++..+.+.++.. ...... +.+..............+.|...++.||+....+...+.....
T Consensus 55 lvllD~~mp~~~G~~~~~~lr~~--~~~~~~-ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~ 126 (133)
T 2r25_B 55 MIFMDVQMPKVDGLLSTKMIRRD--LGYTSP-IVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCA 126 (133)
T ss_dssp EEEECSCCSSSCHHHHHHHHHHH--SCCCSC-EEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCT
T ss_pred EEEEeCCCCCCChHHHHHHHHhh--cCCCCC-EEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 89999999998875433333321 111222 3333333333444556677889999999999999988877543
No 227
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=79.24 E-value=2.1 Score=41.20 Aligned_cols=109 Identities=17% Similarity=0.098 Sum_probs=69.5
Q ss_pred cEEEEeecChhHHHHHHHHHHhccceee-eccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCc
Q 001044 773 TVVVLATVGSMERMIISQWLRKKKVSTL-ETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPV 851 (1177)
Q Consensus 773 ~~v~~~~~~~~~r~~~~~~l~~~g~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 851 (1177)
..+++.++....+..+...++..|..+. .+.+.+++...++ ..++
T Consensus 9 ~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~----------------------------------~~~~ 54 (123)
T 2lpm_A 9 LRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIAR----------------------------------KGQF 54 (123)
T ss_dssp CCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHH----------------------------------HCCS
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----------------------------------hCCC
Confidence 4578888888889999999999988754 4444444433322 1356
Q ss_pred eEEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHH
Q 001044 852 YVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLET 924 (1177)
Q Consensus 852 ~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~ 924 (1177)
+++++|+.++++++..+.+.++.. ...+++.+...... ...+.|...++.||+....+...+..
T Consensus 55 DlvllDi~mP~~~G~el~~~lr~~------~ipvI~lTa~~~~~---~~~~~g~~~yl~KP~~~~~L~~~l~~ 118 (123)
T 2lpm_A 55 DIAIIDVNLDGEPSYPVADILAER------NVPFIFATGYGSKG---LDTRYSNIPLLTKPFLDSELEAVLVQ 118 (123)
T ss_dssp SEEEECSSSSSCCSHHHHHHHHHT------CCSSCCBCTTCTTS---CCSSSCSCSCBCSSSSHHHHHHHHST
T ss_pred CEEEEecCCCCCCHHHHHHHHHcC------CCCEEEEecCccHH---HHHhCCCCcEEECCCCHHHHHHHHHH
Confidence 799999999999986655554431 11122222222111 12334566689999999988877643
No 228
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=79.23 E-value=16 Score=35.01 Aligned_cols=119 Identities=11% Similarity=0.125 Sum_probs=73.9
Q ss_pred CcEEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCc
Q 001044 772 NTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPV 851 (1177)
Q Consensus 772 ~~~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 851 (1177)
...+++.+.....+..+...+...|.....+.+...+...+. ..++
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~----------------------------------~~~~ 52 (154)
T 2rjn_A 7 NYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALK----------------------------------GTSV 52 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHT----------------------------------TSCC
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHh----------------------------------cCCC
Confidence 456788888888888888898888876665555444333221 1235
Q ss_pred eEEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcC-CcEEEeccCChhHHHHHHHHHHhc
Q 001044 852 YVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREG-QNIVVTKPLYKGKMIQLLETAVRG 928 (1177)
Q Consensus 852 ~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~kP~~~~~l~~~l~~~~~~ 928 (1177)
.++++|..+.+.++..+-+.++ .......+.++.... .........+.| ...++.||+....+...+..+...
T Consensus 53 dlvi~d~~l~~~~g~~~~~~l~---~~~~~~~ii~ls~~~-~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~~ 126 (154)
T 2rjn_A 53 QLVISDMRMPEMGGEVFLEQVA---KSYPDIERVVISGYA-DAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQL 126 (154)
T ss_dssp SEEEEESSCSSSCHHHHHHHHH---HHCTTSEEEEEECGG-GHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CEEEEecCCCCCCHHHHHHHHH---HhCCCCcEEEEecCC-CHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHHH
Confidence 7889999998877643333332 222223333333322 223333444455 788999999999999888876653
No 229
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=79.00 E-value=24 Score=33.58 Aligned_cols=128 Identities=12% Similarity=0.083 Sum_probs=78.2
Q ss_pred cEEEEeecChhHHHHHHHHHHhccc--eeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCC
Q 001044 773 TVVVLATVGSMERMIISQWLRKKKV--STLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 850 (1177)
Q Consensus 773 ~~v~~~~~~~~~r~~~~~~l~~~g~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 850 (1177)
..+++.+.....+..+...+...|. ....+.....+...++.... .......+
T Consensus 5 ~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~-------------------------~~~~~~~~ 59 (152)
T 3heb_A 5 VTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDK-------------------------SGRVSAGR 59 (152)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTS-------------------------SSGGGTTC
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhcccc-------------------------ccccccCC
Confidence 3567788888888888999988887 45555554444433321100 00011245
Q ss_pred ceEEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001044 851 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 927 (1177)
Q Consensus 851 ~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 927 (1177)
..++++|..+++.++..+-+.++..... .... +++..............+.|...++.||+....+...+..+..
T Consensus 60 ~dliilD~~l~~~~g~~~~~~lr~~~~~-~~~p-ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 134 (152)
T 3heb_A 60 AQLVLLDLNLPDMTGIDILKLVKENPHT-RRSP-VVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGL 134 (152)
T ss_dssp BEEEEECSBCSSSBHHHHHHHHHHSTTT-TTSC-EEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHhcccc-cCCC-EEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 6899999999998875444443321111 1222 2233333333444556678889999999999999998887643
No 230
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=78.98 E-value=18 Score=33.53 Aligned_cols=117 Identities=11% Similarity=0.071 Sum_probs=69.8
Q ss_pred EEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCceE
Q 001044 774 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 853 (1177)
Q Consensus 774 ~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 853 (1177)
.+++.+.....+..+..++. .+.....+.+...+...+.. .+..+
T Consensus 6 ~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~----------------------------------~~~dl 50 (133)
T 3nhm_A 6 KVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALA----------------------------------HPPDV 50 (133)
T ss_dssp EEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHH----------------------------------SCCSE
T ss_pred EEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhc----------------------------------CCCCE
Confidence 56777777777777777777 56655555544443332211 23578
Q ss_pred EEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001044 854 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 928 (1177)
Q Consensus 854 v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 928 (1177)
+++|..+.+.++..+-+.++...... ...+..+.. ...... ....+.|.+.++.||+....+...+..++.+
T Consensus 51 vi~d~~l~~~~g~~~~~~l~~~~~~~-~~pii~~s~-~~~~~~-~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~ 122 (133)
T 3nhm_A 51 LISDVNMDGMDGYALCGHFRSEPTLK-HIPVIFVSG-YAPRTE-GPADQPVPDAYLVKPVKPPVLIAQLHALLAR 122 (133)
T ss_dssp EEECSSCSSSCHHHHHHHHHHSTTTT-TCCEEEEES-CCC------TTSCCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHhCCccC-CCCEEEEeC-CCcHhH-HHHhhcCCceEEeccCCHHHHHHHHHHHHhh
Confidence 89999999887754444333221111 222223322 222233 4566778888999999999999999887754
No 231
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=78.96 E-value=20 Score=33.20 Aligned_cols=126 Identities=10% Similarity=0.035 Sum_probs=74.6
Q ss_pred cEEEEeecChhHHHHHHHHHHhccc--eeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCC
Q 001044 773 TVVVLATVGSMERMIISQWLRKKKV--STLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 850 (1177)
Q Consensus 773 ~~v~~~~~~~~~r~~~~~~l~~~g~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 850 (1177)
..+++.+.....+..+...+...|. ....+.....+...+.... ......+
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~---------------------------~~~~~~~ 55 (140)
T 1k68_A 3 KKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEG---------------------------EYANASR 55 (140)
T ss_dssp CEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCG---------------------------GGGSCCC
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHccc---------------------------ccccCCC
Confidence 3567788888888888999988876 5555555444333221100 0000134
Q ss_pred ceEEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001044 851 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 927 (1177)
Q Consensus 851 ~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 927 (1177)
..++++|..+.+.++..+-+.++..... ....+..+ .............+.|...++.||+....+...+..+..
T Consensus 56 ~dlvi~d~~~~~~~g~~~~~~l~~~~~~-~~~pii~l-s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 130 (140)
T 1k68_A 56 PDLILLXLNLPKKDGREVLAEIKSDPTL-KRIPVVVL-STSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEE 130 (140)
T ss_dssp CSEEEECSSCSSSCHHHHHHHHHHSTTG-GGSCEEEE-ESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred CcEEEEecCCCcccHHHHHHHHHcCccc-ccccEEEE-ecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHH
Confidence 5788999999887764433333321111 12223333 333333444555677888999999999999988877654
No 232
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=78.80 E-value=27 Score=31.69 Aligned_cols=115 Identities=14% Similarity=0.158 Sum_probs=69.8
Q ss_pred EEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCceE
Q 001044 774 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 853 (1177)
Q Consensus 774 ~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 853 (1177)
.+++.+.....+..+...+...|.....+.....+...+. ..+..+
T Consensus 5 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~----------------------------------~~~~dl 50 (123)
T 1xhf_A 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS----------------------------------EYDINL 50 (123)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH----------------------------------HSCCSE
T ss_pred eEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHh----------------------------------cCCCCE
Confidence 4667777777788888888877766554444333322221 123468
Q ss_pred EEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001044 854 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 927 (1177)
Q Consensus 854 v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 927 (1177)
+++|..+++.++..+-+.++. . ....+.++ .............+.|...++.||+....+...+..+..
T Consensus 51 vi~D~~l~~~~g~~~~~~l~~---~-~~~~ii~~-s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 119 (123)
T 1xhf_A 51 VIMDINLPGKNGLLLARELRE---Q-ANVALMFL-TGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 (123)
T ss_dssp EEECSSCSSSCHHHHHHHHHH---H-CCCEEEEE-ESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEcCCCCCCCHHHHHHHHHh---C-CCCcEEEE-ECCCChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHH
Confidence 889999988876443333332 1 22223333 323333334455567888999999999999888776543
No 233
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=78.62 E-value=21 Score=33.19 Aligned_cols=118 Identities=16% Similarity=0.194 Sum_probs=72.8
Q ss_pred cEEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCce
Q 001044 773 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 852 (1177)
Q Consensus 773 ~~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 852 (1177)
..+++.+.....+..+...+...|.....+.....+...+.. .+..
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~----------------------------------~~~d 49 (140)
T 2qr3_A 4 GTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLRE----------------------------------ENPE 49 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHH----------------------------------SCEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHc----------------------------------CCCC
Confidence 346777778888888888888887766655554444333221 2457
Q ss_pred EEEEEeccc-----ccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001044 853 VVVIDIALL-----DLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 927 (1177)
Q Consensus 853 ~v~id~~l~-----d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 927 (1177)
++++|..+. +.++..+-+.++ .......+.++... ..........+.|...++.||+....+...+..+..
T Consensus 50 lvi~d~~~~~~~~~~~~g~~~~~~l~---~~~~~~~ii~ls~~-~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 125 (140)
T 2qr3_A 50 VVLLDMNFTSGINNGNEGLFWLHEIK---RQYRDLPVVLFTAY-ADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAAS 125 (140)
T ss_dssp EEEEETTTTC-----CCHHHHHHHHH---HHCTTCCEEEEEEG-GGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHT
T ss_pred EEEEeCCcCCCCCCCccHHHHHHHHH---hhCcCCCEEEEECC-CCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHH
Confidence 888998887 666543323222 22222333333332 223334455667888999999999999999888765
Q ss_pred c
Q 001044 928 G 928 (1177)
Q Consensus 928 ~ 928 (1177)
+
T Consensus 126 ~ 126 (140)
T 2qr3_A 126 Q 126 (140)
T ss_dssp C
T ss_pred h
Confidence 4
No 234
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=78.58 E-value=16 Score=34.32 Aligned_cols=118 Identities=15% Similarity=0.121 Sum_probs=74.0
Q ss_pred cEEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCce
Q 001044 773 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 852 (1177)
Q Consensus 773 ~~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 852 (1177)
..+++.+.....+..+...+...|.....+.+...+... . ...++.
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~--------------------------------l--~~~~~d 52 (136)
T 3kto_A 7 PIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQ--------------------------------Q--ISDDAI 52 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTS--------------------------------C--CCTTEE
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHH--------------------------------H--hccCCC
Confidence 357777888888888888888887766554433322110 0 013467
Q ss_pred EEEEEecccc--cChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001044 853 VVVIDIALLD--LSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 928 (1177)
Q Consensus 853 ~v~id~~l~d--~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 928 (1177)
++++|..+++ .++..+-+.++ .......+ ++..............+.|...++.||+....+...+..+..+
T Consensus 53 lvi~D~~l~~~~~~g~~~~~~l~---~~~~~~~i-i~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~ 126 (136)
T 3kto_A 53 GMIIEAHLEDKKDSGIELLETLV---KRGFHLPT-IVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIING 126 (136)
T ss_dssp EEEEETTGGGBTTHHHHHHHHHH---HTTCCCCE-EEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHH
T ss_pred EEEEeCcCCCCCccHHHHHHHHH---hCCCCCCE-EEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhc
Confidence 8999999988 76643333332 22222233 3333333334445566788899999999999999998887654
No 235
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=78.57 E-value=13 Score=34.72 Aligned_cols=116 Identities=14% Similarity=0.005 Sum_probs=72.8
Q ss_pred cEEEEeecChhHHHHHHHHHHhcc-ceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCc
Q 001044 773 TVVVLATVGSMERMIISQWLRKKK-VSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPV 851 (1177)
Q Consensus 773 ~~v~~~~~~~~~r~~~~~~l~~~g-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 851 (1177)
..+++.+.....+..+..++...| .....+.+...+... . ...+.
T Consensus 15 ~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~--------------------------------l--~~~~~ 60 (135)
T 3snk_A 15 KQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGP--------------------------------P--ADTRP 60 (135)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCC--------------------------------C--TTCCC
T ss_pred cEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHH--------------------------------H--hccCC
Confidence 457788888888888999999888 666554443322110 0 11345
Q ss_pred eEEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHH
Q 001044 852 YVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAV 926 (1177)
Q Consensus 852 ~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~ 926 (1177)
.++++|..+++.++..+-+.++. ......+ ++..............+.|...++.||+....+...+....
T Consensus 61 dlvi~D~~l~~~~g~~~~~~l~~---~~~~~~i-i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~ 131 (135)
T 3snk_A 61 GIVILDLGGGDLLGKPGIVEARA---LWATVPL-IAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHD 131 (135)
T ss_dssp SEEEEEEETTGGGGSTTHHHHHG---GGTTCCE-EEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC
T ss_pred CEEEEeCCCCCchHHHHHHHHHh---hCCCCcE-EEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHh
Confidence 78999999998876433332222 1222222 33333333444555667888999999999999988877654
No 236
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=78.20 E-value=32 Score=31.84 Aligned_cols=116 Identities=12% Similarity=0.054 Sum_probs=70.1
Q ss_pred EEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCceE
Q 001044 774 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 853 (1177)
Q Consensus 774 ~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 853 (1177)
.+++.+.....+..+...+...|.....+.....+...+.. .+..+
T Consensus 5 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~----------------------------------~~~dl 50 (136)
T 1mvo_A 5 KILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAET----------------------------------EKPDL 50 (136)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH----------------------------------HCCSE
T ss_pred EEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhh----------------------------------cCCCE
Confidence 46677777777777888888777665544433332222111 13468
Q ss_pred EEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001044 854 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 927 (1177)
Q Consensus 854 v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 927 (1177)
+++|..+++.++..+-+.++ .......+.++..+. .........+.|...++.||+....+...+..+..
T Consensus 51 vl~D~~l~~~~g~~~~~~l~---~~~~~~~ii~~s~~~-~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (136)
T 1mvo_A 51 IVLDVMLPKLDGIEVCKQLR---QQKLMFPILMLTAKD-EEFDKVLGLELGADDYMTKPFSPREVNARVKAILR 120 (136)
T ss_dssp EEEESSCSSSCHHHHHHHHH---HTTCCCCEEEEECTT-CCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEecCCCCCCHHHHHHHHH---cCCCCCCEEEEECCC-CHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHH
Confidence 88999998887644333332 222223333333332 23333445567888899999999999988887654
No 237
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=78.11 E-value=20 Score=34.30 Aligned_cols=118 Identities=9% Similarity=0.131 Sum_probs=71.1
Q ss_pred cEEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCce
Q 001044 773 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 852 (1177)
Q Consensus 773 ~~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 852 (1177)
..+++.+.....+..+..++.. +.....+.+...+...+.. ..|+.
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~---------------------------------~~~~d 50 (151)
T 3kcn_A 5 ERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKK---------------------------------SDPFS 50 (151)
T ss_dssp CEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHH---------------------------------SCCCS
T ss_pred CeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHc---------------------------------CCCCC
Confidence 3567777777777778888764 5555544444433332211 23567
Q ss_pred EEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcC-CcEEEeccCChhHHHHHHHHHHhc
Q 001044 853 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREG-QNIVVTKPLYKGKMIQLLETAVRG 928 (1177)
Q Consensus 853 ~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~kP~~~~~l~~~l~~~~~~ 928 (1177)
++++|..+.+.++..+-+.++ .......+..+ .............+.| ...++.||+....+...+..+...
T Consensus 51 lvi~D~~l~~~~g~~~~~~l~---~~~~~~~ii~~-s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~~ 123 (151)
T 3kcn_A 51 VIMVDMRMPGMEGTEVIQKAR---LISPNSVYLML-TGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQ 123 (151)
T ss_dssp EEEEESCCSSSCHHHHHHHHH---HHCSSCEEEEE-ECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCcHHHHHHHHH---hcCCCcEEEEE-ECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHHH
Confidence 899999999987744333333 22222223223 2222223334445566 788999999999999988877654
No 238
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=78.08 E-value=17 Score=34.39 Aligned_cols=120 Identities=9% Similarity=0.026 Sum_probs=75.4
Q ss_pred cEEEEeecChhHHHHHHHHHHhccce--eeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCC
Q 001044 773 TVVVLATVGSMERMIISQWLRKKKVS--TLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 850 (1177)
Q Consensus 773 ~~v~~~~~~~~~r~~~~~~l~~~g~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 850 (1177)
..+++.+.....+..+..++...|.. ...+.+...+...+. ..+
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~----------------------------------~~~ 51 (144)
T 3kht_A 6 KRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQ----------------------------------QAK 51 (144)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHT----------------------------------TCC
T ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhh----------------------------------cCC
Confidence 45777888888888888999888765 444444443332221 123
Q ss_pred ceEEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccC-ChhHHHHHHHHHHhc
Q 001044 851 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPL-YKGKMIQLLETAVRG 928 (1177)
Q Consensus 851 ~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~-~~~~l~~~l~~~~~~ 928 (1177)
..++++|..+.+.++..+-+.++.... .....+ ++..............+.|...++.||+ ....+...+..+...
T Consensus 52 ~dlii~D~~l~~~~g~~~~~~lr~~~~-~~~~pi-i~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~~ 128 (144)
T 3kht_A 52 YDLIILDIGLPIANGFEVMSAVRKPGA-NQHTPI-VILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSY 128 (144)
T ss_dssp CSEEEECTTCGGGCHHHHHHHHHSSST-TTTCCE-EEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhccc-ccCCCE-EEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHHH
Confidence 568889999888876444333332111 112222 3333333344455566788999999999 999999988877654
No 239
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=77.94 E-value=22 Score=33.44 Aligned_cols=116 Identities=11% Similarity=0.209 Sum_probs=70.1
Q ss_pred EEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCceE
Q 001044 774 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 853 (1177)
Q Consensus 774 ~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 853 (1177)
.+++.+.....+..+...+...|.....+.+...+...+.. ....+
T Consensus 6 ~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~----------------------------------~~~dl 51 (137)
T 3cfy_A 6 RVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIER----------------------------------SKPQL 51 (137)
T ss_dssp EEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHH----------------------------------HCCSE
T ss_pred eEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHh----------------------------------cCCCE
Confidence 45666777777777777777767655544443333322211 13468
Q ss_pred EEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001044 854 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 927 (1177)
Q Consensus 854 v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 927 (1177)
+++|..+++.++..+-+.++ .......+ .+..............+.|...++.||+....+...+..+..
T Consensus 52 vllD~~l~~~~g~~l~~~l~---~~~~~~~i-i~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 121 (137)
T 3cfy_A 52 IILDLKLPDMSGEDVLDWIN---QNDIPTSV-IIATAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLK 121 (137)
T ss_dssp EEECSBCSSSBHHHHHHHHH---HTTCCCEE-EEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEecCCCCCCHHHHHHHHH---hcCCCCCE-EEEEecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHHH
Confidence 88999998887643333332 22222223 333333333444555667888999999999999988877654
No 240
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=77.69 E-value=28 Score=32.61 Aligned_cols=119 Identities=11% Similarity=0.092 Sum_probs=69.3
Q ss_pred EEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCceE
Q 001044 774 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 853 (1177)
Q Consensus 774 ~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 853 (1177)
.+++.+.....+..+...+...|.....+.....+...+.. .+..+
T Consensus 5 ~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~----------------------------------~~~dl 50 (138)
T 3c3m_A 5 TILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNA----------------------------------TPPDL 50 (138)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH----------------------------------SCCSE
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHhc----------------------------------cCCCE
Confidence 46777778888888888888877766555443333322211 23478
Q ss_pred EEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001044 854 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 928 (1177)
Q Consensus 854 v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 928 (1177)
+++|..+++.++..+-+.++..... ....+..+... ............|...++.||+....+...+..+...
T Consensus 51 vi~D~~l~~~~g~~~~~~l~~~~~~-~~~~ii~ls~~-~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~ 123 (138)
T 3c3m_A 51 VLLDIMMEPMDGWETLERIKTDPAT-RDIPVLMLTAK-PLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLAR 123 (138)
T ss_dssp EEEESCCSSSCHHHHHHHHHHSTTT-TTSCEEEEESS-CCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSC
T ss_pred EEEeCCCCCCCHHHHHHHHHcCccc-CCCCEEEEECC-CChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHH
Confidence 8999999998775433333321111 12223333322 2222222222344568899999999999888876643
No 241
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=77.63 E-value=28 Score=31.38 Aligned_cols=115 Identities=13% Similarity=0.113 Sum_probs=68.8
Q ss_pred EEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCceEE
Q 001044 775 VVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVV 854 (1177)
Q Consensus 775 v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v 854 (1177)
+++.+.....+..+...+...|.....+.....+...+.. .+..++
T Consensus 3 ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~----------------------------------~~~dli 48 (121)
T 2pl1_A 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNE----------------------------------HIPDIA 48 (121)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH----------------------------------SCCSEE
T ss_pred EEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhc----------------------------------cCCCEE
Confidence 4566667777777788888777665555444333322211 234678
Q ss_pred EEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001044 855 VIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 927 (1177)
Q Consensus 855 ~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 927 (1177)
++|..+++.++..+-+.++ .......+.++ .............+.|...++.||+....+...+..+..
T Consensus 49 l~D~~l~~~~g~~~~~~l~---~~~~~~~ii~~-s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 117 (121)
T 2pl1_A 49 IVDLGLPDEDGLSLIRRWR---SNDVSLPILVL-TARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR 117 (121)
T ss_dssp EECSCCSSSCHHHHHHHHH---HTTCCSCEEEE-ESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEecCCCCCCHHHHHHHHH---hcCCCCCEEEE-ecCCCHHHHHHHHHcCccceEECCCCHHHHHHHHHHHHH
Confidence 8999998887643333332 22222223333 333333344555667888999999999999888776543
No 242
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=77.58 E-value=24 Score=31.70 Aligned_cols=112 Identities=9% Similarity=0.057 Sum_probs=67.0
Q ss_pred EEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCceE
Q 001044 774 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 853 (1177)
Q Consensus 774 ~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 853 (1177)
.+++.+.....+..+...+...|.....+.+...+...+.. .+..+
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~----------------------------------~~~dl 48 (116)
T 3a10_A 3 RILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFS----------------------------------GNYDL 48 (116)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH----------------------------------SCCSE
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc----------------------------------CCCCE
Confidence 35667777777888888888877765555444333322211 23468
Q ss_pred EEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHH
Q 001044 854 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETA 925 (1177)
Q Consensus 854 v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~ 925 (1177)
+++|..+++.++..+-+.++ .......+.++..+... . ....+.|...++.||+....+...+..+
T Consensus 49 vl~D~~l~~~~g~~~~~~l~---~~~~~~~ii~~s~~~~~-~--~~~~~~g~~~~l~Kp~~~~~l~~~i~~~ 114 (116)
T 3a10_A 49 VILDIEMPGISGLEVAGEIR---KKKKDAKIILLTAYSHY-R--SDMSSWAADEYVVKSFNFDELKEKVKKL 114 (116)
T ss_dssp EEECSCCSSSCHHHHHHHHH---HHCTTCCEEEEESCGGG-G--GCGGGGGSSEEEECCSSTHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHH---ccCCCCeEEEEECCcch-H--HHHHhccccceEECCCCHHHHHHHHHHH
Confidence 88999998887644333332 22222333333332221 1 3445567888999999998888776553
No 243
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=77.37 E-value=11 Score=37.90 Aligned_cols=117 Identities=9% Similarity=0.103 Sum_probs=76.3
Q ss_pred CcEEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCc
Q 001044 772 NTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPV 851 (1177)
Q Consensus 772 ~~~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 851 (1177)
...+++.++....+..+...+...|..+..+.+...+...+. ..++
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~----------------------------------~~~~ 52 (184)
T 3rqi_A 7 DKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAG----------------------------------AEKF 52 (184)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHT----------------------------------TSCC
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh----------------------------------hCCC
Confidence 346788888888899999999988877666555444333221 1235
Q ss_pred eEEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHH
Q 001044 852 YVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAV 926 (1177)
Q Consensus 852 ~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~ 926 (1177)
+++++|..++++++..+-+.++. ...... +++..............+.|.+.++.||+....+...+..+.
T Consensus 53 dlvl~D~~lp~~~g~~~~~~l~~---~~~~~~-ii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~ 123 (184)
T 3rqi_A 53 EFITVXLHLGNDSGLSLIAPLCD---LQPDAR-ILVLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNA 123 (184)
T ss_dssp SEEEECSEETTEESHHHHHHHHH---HCTTCE-EEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTH
T ss_pred CEEEEeccCCCccHHHHHHHHHh---cCCCCC-EEEEeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHH
Confidence 78999999999887544443332 122222 333343444444556667889999999999988887765443
No 244
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=77.28 E-value=13 Score=35.37 Aligned_cols=121 Identities=17% Similarity=0.088 Sum_probs=75.8
Q ss_pred CCcEEEEeecChhHHHHHHHHHHhcc-ceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhcc-
Q 001044 771 PNTVVVLATVGSMERMIISQWLRKKK-VSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALI- 848 (1177)
Q Consensus 771 ~~~~v~~~~~~~~~r~~~~~~l~~~g-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 848 (1177)
+...+++.+.....+..+..++...| .....+......... .. ..
T Consensus 19 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~--------------------------------~~-~~~ 65 (146)
T 4dad_A 19 GMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQ--------------------------------RT-DGL 65 (146)
T ss_dssp GGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTT--------------------------------CH-HHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHH--------------------------------HH-hcC
Confidence 35578888889988999999998887 655554433211100 00 01
Q ss_pred CCceEEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001044 849 DPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 928 (1177)
Q Consensus 849 ~p~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 928 (1177)
.++.++++|..+.+.++..+-+.++ ....... +++..............+.|...++.||+....+...+..+..+
T Consensus 66 ~~~dlvi~D~~l~~~~g~~~~~~l~---~~~~~~~-ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 141 (146)
T 4dad_A 66 DAFDILMIDGAALDTAELAAIEKLS---RLHPGLT-CLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQ 141 (146)
T ss_dssp TTCSEEEEECTTCCHHHHHHHHHHH---HHCTTCE-EEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCccHHHHHHHHH---HhCCCCc-EEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhh
Confidence 3457889999988876643333322 2222222 33333333344445566788888999999999999988877653
No 245
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=77.26 E-value=9.9 Score=41.72 Aligned_cols=115 Identities=12% Similarity=-0.001 Sum_probs=77.6
Q ss_pred cEEEEeecChhHHHHHHHHHHhccceee-eccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCc
Q 001044 773 TVVVLATVGSMERMIISQWLRKKKVSTL-ETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPV 851 (1177)
Q Consensus 773 ~~v~~~~~~~~~r~~~~~~l~~~g~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 851 (1177)
..+++.+++...+..+...++..|..+. .+.+...+...+.. .++
T Consensus 161 ~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~~----------------------------------~~~ 206 (286)
T 3n0r_A 161 TEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVTR----------------------------------RTP 206 (286)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----------------------------------CCC
T ss_pred CcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHHh----------------------------------CCC
Confidence 3577888889999999999999998887 66665555444322 235
Q ss_pred eEEEEEeccc-ccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001044 852 YVVVIDIALL-DLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 928 (1177)
Q Consensus 852 ~~v~id~~l~-d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 928 (1177)
+++++|+.++ .+++.-....++... ... +++.+... .........|.+.++.||+....+...+..++..
T Consensus 207 dlvl~D~~MPd~mdG~e~~~~ir~~~----~~p-iI~lT~~~--~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~~ 277 (286)
T 3n0r_A 207 GLVLADIQLADGSSGIDAVKDILGRM----DVP-VIFITAFP--ERLLTGERPEPTFLITKPFQPETVKAAIGQALFF 277 (286)
T ss_dssp SEEEEESCCTTSCCTTTTTHHHHHHT----TCC-EEEEESCG--GGGCCSSSCCCSSEEESSCCHHHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCCCCHHHHHHHHHhcC----CCC-EEEEeCCH--HHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHh
Confidence 7899999999 588754433333322 222 22233222 2233345678888999999999999998887653
No 246
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=77.25 E-value=14 Score=32.97 Aligned_cols=113 Identities=12% Similarity=0.076 Sum_probs=66.6
Q ss_pred EEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCceE
Q 001044 774 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 853 (1177)
Q Consensus 774 ~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 853 (1177)
.+++.+.....+..+...+...|.....+.+...+...+.. .+..+
T Consensus 3 ~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~----------------------------------~~~dl 48 (119)
T 2j48_A 3 HILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDL----------------------------------LQPIV 48 (119)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHH----------------------------------HCCSE
T ss_pred EEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHh----------------------------------cCCCE
Confidence 45667777777888888888888766655554443333221 13467
Q ss_pred EEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHH
Q 001044 854 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETA 925 (1177)
Q Consensus 854 v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~ 925 (1177)
+++|..+.+.++..+-+.++..... ....+.++...... . ...+.|...++.||+....+...+...
T Consensus 49 ii~d~~~~~~~~~~~~~~l~~~~~~-~~~~ii~~~~~~~~-~---~~~~~g~~~~l~kp~~~~~l~~~l~~~ 115 (119)
T 2j48_A 49 ILMAWPPPDQSCLLLLQHLREHQAD-PHPPLVLFLGEPPV-D---PLLTAQASAILSKPLDPQLLLTTLQGL 115 (119)
T ss_dssp EEEECSTTCCTHHHHHHHHHHTCCC-SSCCCEEEESSCCS-S---HHHHHHCSEECSSCSTTHHHHHHHHTT
T ss_pred EEEecCCCCCCHHHHHHHHHhcccc-CCCCEEEEeCCCCc-h---hhhhcCHHHhccCCCCHHHHHHHHHHH
Confidence 8889888776654333333221111 12223333332222 2 555677888999999998888776543
No 247
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=77.22 E-value=11 Score=40.11 Aligned_cols=84 Identities=8% Similarity=-0.041 Sum_probs=60.0
Q ss_pred HHHHHHHhhcCCEEE-EEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCC------CCCCCHHHHH
Q 001044 1035 IVACKILEKVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ------MPKMDGYEAT 1107 (1177)
Q Consensus 1035 ~~l~~~L~~~G~~v~-~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~------MP~mdG~e~~ 1107 (1177)
.-+...+++.|..+. .+.+.++|..+.+. ..|+|..-.. .+...+++++
T Consensus 119 ~~~i~~~~~~g~~v~~~v~t~eea~~a~~~------------------------Gad~Ig~~~~g~t~~~~~~~~~~~~i 174 (232)
T 3igs_A 119 EALLARIHHHHLLTMADCSSVDDGLACQRL------------------------GADIIGTTMSGYTTPDTPEEPDLPLV 174 (232)
T ss_dssp HHHHHHHHHTTCEEEEECCSHHHHHHHHHT------------------------TCSEEECTTTTSSSSSCCSSCCHHHH
T ss_pred HHHHHHHHHCCCEEEEeCCCHHHHHHHHhC------------------------CCCEEEEcCccCCCCCCCCCCCHHHH
Confidence 334445566677655 46788888776642 5787753211 1233468999
Q ss_pred HHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1108 IEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1108 r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
+++++. ++|||+-.+-.+.++..+++++|+|+++.
T Consensus 175 ~~l~~~-------~ipvIA~GGI~t~~d~~~~~~~GadgV~V 209 (232)
T 3igs_A 175 KALHDA-------GCRVIAEGRYNSPALAAEAIRYGAWAVTV 209 (232)
T ss_dssp HHHHHT-------TCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHhc-------CCcEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 998863 48999999999999999999999999985
No 248
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=77.12 E-value=23 Score=33.16 Aligned_cols=115 Identities=10% Similarity=0.060 Sum_probs=70.8
Q ss_pred EEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCceE
Q 001044 774 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 853 (1177)
Q Consensus 774 ~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 853 (1177)
.+++.+.....+..+...+...|.....+.+...+...+. ..+..+
T Consensus 6 ~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~----------------------------------~~~~dl 51 (136)
T 2qzj_A 6 KILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIF----------------------------------SNKYDL 51 (136)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH----------------------------------HCCCSE
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH----------------------------------hcCCCE
Confidence 4677777777788888888877765544444333322221 123468
Q ss_pred EEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001044 854 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 927 (1177)
Q Consensus 854 v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 927 (1177)
+++|..++++++..+-+.++. .. ...+. +..............+.|...++.||+....+...+.....
T Consensus 52 vllD~~l~~~~g~~l~~~l~~---~~-~~~ii-~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~ 120 (136)
T 2qzj_A 52 IFLEIILSDGDGWTLCKKIRN---VT-TCPIV-YMTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILR 120 (136)
T ss_dssp EEEESEETTEEHHHHHHHHHT---TC-CCCEE-EEESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHcc---CC-CCCEE-EEEcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 899999998876443333332 11 22233 33333333344455667888999999999999988877654
No 249
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=76.84 E-value=14 Score=42.04 Aligned_cols=117 Identities=11% Similarity=0.110 Sum_probs=77.9
Q ss_pred EEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCceE
Q 001044 774 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 853 (1177)
Q Consensus 774 ~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 853 (1177)
.+++.++....+..+..++...|..+..+.+...+...+.. .++++
T Consensus 2 ~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~----------------------------------~~~Dl 47 (368)
T 3dzd_A 2 RVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKE----------------------------------LFFPV 47 (368)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH----------------------------------BCCSE
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh----------------------------------CCCCE
Confidence 36777888888888999999888776666555444433321 23468
Q ss_pred EEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001044 854 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 928 (1177)
Q Consensus 854 v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 928 (1177)
+++|+.++++++.-+-+.++. ...... +++..............+.|...++.||+....+...+..+...
T Consensus 48 vllDi~mP~~dG~ell~~lr~---~~~~~p-vI~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~ 118 (368)
T 3dzd_A 48 IVLDVWMPDGDGVNFIDFIKE---NSPDSV-VIVITGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEE 118 (368)
T ss_dssp EEEESEETTEETTTHHHHHHH---HCTTCE-EEEEECSSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh---hCCCCe-EEEEeCCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 999999999988544333332 122222 33344444444555666788899999999999999888877654
No 250
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=76.23 E-value=31 Score=30.98 Aligned_cols=113 Identities=10% Similarity=0.073 Sum_probs=67.1
Q ss_pred EEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCceEE
Q 001044 775 VVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVV 854 (1177)
Q Consensus 775 v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v 854 (1177)
+++.+.....+..+...+...|.....+.+.......+.. .+..++
T Consensus 4 ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~----------------------------------~~~dlv 49 (120)
T 2a9o_A 4 ILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEA----------------------------------EQPDII 49 (120)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH----------------------------------HCCSEE
T ss_pred EEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHh----------------------------------CCCCEE
Confidence 5566677777777778887777655544433332222111 134688
Q ss_pred EEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHH
Q 001044 855 VIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAV 926 (1177)
Q Consensus 855 ~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~ 926 (1177)
++|..+++.++..+-+.++. . ....+.++.. ...........+.|...++.||+....+...+..+.
T Consensus 50 l~D~~l~~~~g~~~~~~l~~---~-~~~~ii~~s~-~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 116 (120)
T 2a9o_A 50 ILDLMLPEIDGLEVAKTIRK---T-SSVPILMLSA-KDSEFDKVIGLELGADDYVTKPFSNRELQARVKALL 116 (120)
T ss_dssp EECSSCSSSCHHHHHHHHHH---H-CCCCEEEEES-CCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred EEeccCCCCCHHHHHHHHHh---C-CCCCEEEEec-CCchHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHH
Confidence 89999988876443333332 1 2222333322 222333344556788889999999999988877654
No 251
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=75.15 E-value=35 Score=31.13 Aligned_cols=118 Identities=12% Similarity=0.089 Sum_probs=68.8
Q ss_pred EEEEeecChhHHHHHHHHHHhccc-eeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCce
Q 001044 774 VVVLATVGSMERMIISQWLRKKKV-STLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 852 (1177)
Q Consensus 774 ~v~~~~~~~~~r~~~~~~l~~~g~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 852 (1177)
.+++.+.....+..+...+...|. ....+.+...+...+ . ..+..
T Consensus 6 ~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~--------------------------------~--~~~~d 51 (128)
T 1jbe_A 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL--------------------------------Q--AGGYG 51 (128)
T ss_dssp CEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHH--------------------------------T--TCCCC
T ss_pred EEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHH--------------------------------H--hcCCC
Confidence 466777777777788888877765 333333333222111 0 12346
Q ss_pred EEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001044 853 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 927 (1177)
Q Consensus 853 ~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 927 (1177)
++++|..++++++..+-+.++..... .... +.+..............+.|...++.||+....+...+..+..
T Consensus 52 lvi~D~~l~~~~g~~l~~~l~~~~~~-~~~~-ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~ 124 (128)
T 1jbe_A 52 FVISDWNMPNMDGLELLKTIRAXXAM-SALP-VLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFE 124 (128)
T ss_dssp EEEEESCCSSSCHHHHHHHHHC--CC-TTCC-EEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhhccc-CCCc-EEEEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHHH
Confidence 88899999988775433333321111 1122 2333333333444555667888999999999999888876543
No 252
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=74.17 E-value=32 Score=32.22 Aligned_cols=129 Identities=9% Similarity=0.084 Sum_probs=75.7
Q ss_pred cEEEEeecChhHHHHHHHHHHhccc--eeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCC
Q 001044 773 TVVVLATVGSMERMIISQWLRKKKV--STLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 850 (1177)
Q Consensus 773 ~~v~~~~~~~~~r~~~~~~l~~~g~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 850 (1177)
..+++.+.....+..+..++...|. ....+.....+...+........ .....+
T Consensus 7 ~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~------------------------~~~~~~ 62 (149)
T 1k66_A 7 QPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCN------------------------PDIAPR 62 (149)
T ss_dssp SCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSC------------------------GGGCCC
T ss_pred ccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccC------------------------cccCCC
Confidence 4577788888888888899988886 55555555444433321100000 000034
Q ss_pred ceEEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001044 851 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 927 (1177)
Q Consensus 851 ~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 927 (1177)
..++++|..+.+.++..+-+.++..... ....+..+ .............+.|...++.||+....+...+..+..
T Consensus 63 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~-~~~~ii~~-t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 137 (149)
T 1k66_A 63 PAVILLDLNLPGTDGREVLQEIKQDEVL-KKIPVVIM-TTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIK 137 (149)
T ss_dssp CSEEEECSCCSSSCHHHHHHHHTTSTTG-GGSCEEEE-ESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhCccc-CCCeEEEE-eCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 5788999999887764433333321111 22223333 333333444555677888999999999999988877654
No 253
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=74.06 E-value=41 Score=31.39 Aligned_cols=75 Identities=12% Similarity=0.146 Sum_probs=45.7
Q ss_pred CceEEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001044 850 PVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 927 (1177)
Q Consensus 850 p~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 927 (1177)
+..++++|..++++++..+-+.++ .......+.++..+.........+...|...++.||+....+...+..+..
T Consensus 44 ~~dlvl~D~~lp~~~g~~~~~~l~---~~~~~~~ii~~s~~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 118 (139)
T 2jk1_A 44 WVQVIICDQRMPGRTGVDFLTEVR---ERWPETVRIIITGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAAR 118 (139)
T ss_dssp CEEEEEEESCCSSSCHHHHHHHHH---HHCTTSEEEEEESCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHH---HhCCCCcEEEEeCCCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHHHH
Confidence 457899999999887743333332 222223333343333332333333444678899999999999988877654
No 254
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=73.59 E-value=26 Score=32.76 Aligned_cols=117 Identities=10% Similarity=0.119 Sum_probs=72.2
Q ss_pred cEEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCce
Q 001044 773 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 852 (1177)
Q Consensus 773 ~~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 852 (1177)
..+++.+.....+..+..++...|.....+.....+...+. ..+..
T Consensus 5 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~----------------------------------~~~~d 50 (142)
T 2qxy_A 5 PTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLR----------------------------------REKID 50 (142)
T ss_dssp CEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHT----------------------------------TSCCS
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHh----------------------------------ccCCC
Confidence 35677788888888888999888876665554444333221 12346
Q ss_pred EEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001044 853 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 928 (1177)
Q Consensus 853 ~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 928 (1177)
++++|. +.+.++..+ +..+........+.++ .............+.|...++.||+....+...+..+..+
T Consensus 51 lvi~d~-~~~~~g~~~---~~~l~~~~~~~pii~l-s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 121 (142)
T 2qxy_A 51 LVFVDV-FEGEESLNL---IRRIREEFPDTKVAVL-SAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISS 121 (142)
T ss_dssp EEEEEC-TTTHHHHHH---HHHHHHHCTTCEEEEE-ESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC
T ss_pred EEEEeC-CCCCcHHHH---HHHHHHHCCCCCEEEE-ECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhh
Confidence 888898 766544322 2222222222333333 3333334445566778888999999999999988877654
No 255
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=73.38 E-value=28 Score=31.90 Aligned_cols=118 Identities=14% Similarity=0.163 Sum_probs=69.1
Q ss_pred EEEEeecChhHHHHHHHHHHhccc-eeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCce
Q 001044 774 VVVLATVGSMERMIISQWLRKKKV-STLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 852 (1177)
Q Consensus 774 ~v~~~~~~~~~r~~~~~~l~~~g~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 852 (1177)
.+++.+.....+..+...+...|. ....+.+...+...+. ..+..
T Consensus 8 ~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~----------------------------------~~~~d 53 (129)
T 1p6q_A 8 KVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMA----------------------------------QNPHH 53 (129)
T ss_dssp CEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHH----------------------------------TSCCS
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHH----------------------------------cCCCC
Confidence 467777777778888888877665 3333333333222211 12346
Q ss_pred EEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001044 853 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 927 (1177)
Q Consensus 853 ~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 927 (1177)
++++|..+++.++..+-+.++.... .......+..............+.|...++.||+....+...+..+..
T Consensus 54 lvl~D~~l~~~~g~~~~~~l~~~~~--~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 126 (129)
T 1p6q_A 54 LVISDFNMPKMDGLGLLQAVRANPA--TKKAAFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFG 126 (129)
T ss_dssp EEEECSSSCSSCHHHHHHHHTTCTT--STTCEEEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHhcCcc--ccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHH
Confidence 8889999998877543333332111 111222333333333334455567888899999999999888876543
No 256
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=73.30 E-value=32 Score=32.76 Aligned_cols=118 Identities=15% Similarity=0.164 Sum_probs=72.7
Q ss_pred cEEEEeecChhHHHHHHHHHHh-ccceee-eccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCC
Q 001044 773 TVVVLATVGSMERMIISQWLRK-KKVSTL-ETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 850 (1177)
Q Consensus 773 ~~v~~~~~~~~~r~~~~~~l~~-~g~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 850 (1177)
..+++.+.....+..+..++.. .|.... .+.+...+...+.. .+
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~----------------------------------~~ 51 (153)
T 3cz5_A 6 ARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRE----------------------------------TT 51 (153)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHT----------------------------------TC
T ss_pred cEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhc----------------------------------CC
Confidence 4567777888888888888887 666654 44444433332211 23
Q ss_pred ceEEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001044 851 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 928 (1177)
Q Consensus 851 ~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 928 (1177)
..++++|..+.+.++..+-+.++ .......+.++ .............+.|...++.||+....+...+..+..+
T Consensus 52 ~dlii~D~~l~~~~g~~~~~~l~---~~~~~~~ii~l-s~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~ 125 (153)
T 3cz5_A 52 PDIVVMDLTLPGPGGIEATRHIR---QWDGAARILIF-TMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAG 125 (153)
T ss_dssp CSEEEECSCCSSSCHHHHHHHHH---HHCTTCCEEEE-ESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTT
T ss_pred CCEEEEecCCCCCCHHHHHHHHH---HhCCCCeEEEE-ECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhC
Confidence 46888899888877643333332 22222233333 3333334445566788889999999999999988876543
No 257
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=73.23 E-value=27 Score=35.31 Aligned_cols=118 Identities=14% Similarity=0.148 Sum_probs=73.1
Q ss_pred cEEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCce
Q 001044 773 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 852 (1177)
Q Consensus 773 ~~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 852 (1177)
..+++.++....+..+...+...|.....+.....+...+ ...+.+
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~----------------------------------~~~~~d 50 (208)
T 1yio_A 5 PTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHR----------------------------------RPEQHG 50 (208)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHC----------------------------------CTTSCE
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhh----------------------------------hccCCC
Confidence 3577788888888888888888777655444433222110 012457
Q ss_pred EEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001044 853 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 928 (1177)
Q Consensus 853 ~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 928 (1177)
++++|..++++++..+-+.++. ......+.++-.+. .........+.|...++.||+....+...+..+..+
T Consensus 51 lvl~D~~lp~~~g~~~~~~l~~---~~~~~~ii~ls~~~-~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 122 (208)
T 1yio_A 51 CLVLDMRMPGMSGIELQEQLTA---ISDGIPIVFITAHG-DIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQL 122 (208)
T ss_dssp EEEEESCCSSSCHHHHHHHHHH---TTCCCCEEEEESCT-TSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHh---cCCCCCEEEEeCCC-CHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHhh
Confidence 8999999999887543333322 22223333333333 233344455678888999999999998888776543
No 258
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=72.66 E-value=24 Score=33.08 Aligned_cols=117 Identities=15% Similarity=0.127 Sum_probs=67.9
Q ss_pred EEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCceE
Q 001044 774 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 853 (1177)
Q Consensus 774 ~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 853 (1177)
.+++.+.....+..+...+...|.....+.+...+...+. ..+..+
T Consensus 12 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~----------------------------------~~~~dl 57 (140)
T 3c97_A 12 SVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQ----------------------------------NRQFDV 57 (140)
T ss_dssp EEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHH----------------------------------HSCCSE
T ss_pred eEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHh----------------------------------cCCCCE
Confidence 5777788888888888888777655444443333322221 123478
Q ss_pred EEEEecccccChhHHHHHhhhhhhhh--ccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001044 854 VVIDIALLDLSSDLWREQLNSLDIFH--RKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 928 (1177)
Q Consensus 854 v~id~~l~d~~~~~~~e~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 928 (1177)
+++|..+++.++..+-+.++...... ....+..+... ..... ..+.|...++.||+....+...+..+..+
T Consensus 58 vllD~~lp~~~g~~~~~~l~~~~~~~~~~~~~ii~~s~~-~~~~~---~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 130 (140)
T 3c97_A 58 IIMDIQMPVMDGLEAVSEIRNYERTHNTKRASIIAITAD-TIDDD---RPGAELDEYVSKPLNPNQLRDVVLTCHSE 130 (140)
T ss_dssp EEECTTCCSSCHHHHHHHHHHHHHHHTCCCCCCEEEESS-CCSCC---CCCSSCSEEEESSCCHHHHHHHHHHHHC-
T ss_pred EEEeCCCCCCcHHHHHHHHHhhhhhcCCCceEEEEEeCc-cchhH---HHhCChhheEeCCCCHHHHHHHHHHHhCC
Confidence 89999999888754444433221111 11222222221 11111 12557778999999999999988877643
No 259
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=71.82 E-value=41 Score=30.15 Aligned_cols=114 Identities=14% Similarity=0.141 Sum_probs=66.8
Q ss_pred EEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCceEE
Q 001044 775 VVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVV 854 (1177)
Q Consensus 775 v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v 854 (1177)
+++.+.....+..+...+...|.....+.........+. ..+..++
T Consensus 4 ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~----------------------------------~~~~dlv 49 (121)
T 1zh2_A 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAA----------------------------------TRKPDLI 49 (121)
T ss_dssp EEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH----------------------------------HHCCSEE
T ss_pred EEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHh----------------------------------cCCCCEE
Confidence 556667777777778888777765544433322221111 1134688
Q ss_pred EEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001044 855 VIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 927 (1177)
Q Consensus 855 ~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 927 (1177)
++|..+++.++..+-+.++ .. ....+.++ .............+.|...++.||+....+...+.....
T Consensus 50 i~D~~l~~~~g~~~~~~l~---~~-~~~~ii~~-s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~ 117 (121)
T 1zh2_A 50 ILDLGLPDGDGIEFIRDLR---QW-SAVPVIVL-SARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 (121)
T ss_dssp EEESEETTEEHHHHHHHHH---TT-CCCCEEEE-ESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEeCCCCCCcHHHHHHHHH---hC-CCCcEEEE-ECCCCHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHHHH
Confidence 8999998887643333333 11 22223333 323333334455567888999999999999888776553
No 260
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=71.77 E-value=45 Score=30.59 Aligned_cols=117 Identities=11% Similarity=0.173 Sum_probs=68.6
Q ss_pred EEEEeecChhHHHHHHHHHHhc-cceee-eccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCc
Q 001044 774 VVVLATVGSMERMIISQWLRKK-KVSTL-ETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPV 851 (1177)
Q Consensus 774 ~v~~~~~~~~~r~~~~~~l~~~-g~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 851 (1177)
.+++.+.....+..+..++... |.... .+.+...+...+.. .+.
T Consensus 4 ~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~~----------------------------------~~~ 49 (130)
T 1dz3_A 4 KVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEE----------------------------------KRP 49 (130)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHH----------------------------------HCC
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhc----------------------------------CCC
Confidence 3566777777777788888765 55432 33333333222211 124
Q ss_pred eEEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001044 852 YVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 927 (1177)
Q Consensus 852 ~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 927 (1177)
.++++|..++++++..+-+.++.. ......+.++ .............+.|...++.||+....+...+..+..
T Consensus 50 dlvllD~~l~~~~g~~~~~~l~~~--~~~~~~ii~l-s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~ 122 (130)
T 1dz3_A 50 DILLLDIIMPHLDGLAVLERIRAG--FEHQPNVIML-TAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYG 122 (130)
T ss_dssp SEEEEESCCSSSCHHHHHHHHHHH--CSSCCEEEEE-EETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHH
T ss_pred CEEEEecCCCCCCHHHHHHHHHhc--CCCCCcEEEE-ecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 688999999988764333333221 1122223333 333333444556667888999999999999988877654
No 261
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=71.72 E-value=30 Score=35.69 Aligned_cols=117 Identities=12% Similarity=0.084 Sum_probs=73.5
Q ss_pred EEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCceE
Q 001044 774 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 853 (1177)
Q Consensus 774 ~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 853 (1177)
.+++.+.....+..+...+...|.....+.+...+...+.. .+.++
T Consensus 9 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~----------------------------------~~~dl 54 (233)
T 1ys7_A 9 RVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATE----------------------------------NRPDA 54 (233)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH----------------------------------SCCSE
T ss_pred eEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHh----------------------------------CCCCE
Confidence 57778888888888888888877766555544433322211 23478
Q ss_pred EEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001044 854 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 928 (1177)
Q Consensus 854 v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 928 (1177)
+++|..++++++..+-+.++ .......+.++..+ ..........+.|...++.||+....+...+..+..+
T Consensus 55 vllD~~l~~~~g~~~~~~l~---~~~~~~~ii~lt~~-~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 125 (233)
T 1ys7_A 55 IVLDINMPVLDGVSVVTALR---AMDNDVPVCVLSAR-SSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRR 125 (233)
T ss_dssp EEEESSCSSSCHHHHHHHHH---HTTCCCCEEEEECC-CTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHH---hcCCCCCEEEEEcC-CCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 89999999887644333332 22222333333332 2233334455678888999999999999988887654
No 262
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=71.62 E-value=32 Score=35.87 Aligned_cols=116 Identities=12% Similarity=0.076 Sum_probs=73.7
Q ss_pred EEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCceE
Q 001044 774 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 853 (1177)
Q Consensus 774 ~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 853 (1177)
.+++.+.....+..+...+...|..+..+.+...+...+.. .+.++
T Consensus 7 ~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~----------------------------------~~~dl 52 (238)
T 2gwr_A 7 RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRE----------------------------------LRPDL 52 (238)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHH----------------------------------HCCSE
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh----------------------------------CCCCE
Confidence 56778888888888888888877766555544443332221 13468
Q ss_pred EEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001044 854 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 928 (1177)
Q Consensus 854 v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 928 (1177)
+++|..+++.++..+-+.++. .. ...+..+.. ...........+.|...++.||+....+...+..+..+
T Consensus 53 vilD~~l~~~~g~~~~~~lr~---~~-~~~ii~lt~-~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 122 (238)
T 2gwr_A 53 VLLDLMLPGMNGIDVCRVLRA---DS-GVPIVMLTA-KTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRR 122 (238)
T ss_dssp EEEESSCSSSCHHHHHHHHHT---TC-CCCEEEEEE-TTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCC
T ss_pred EEEeCCCCCCCHHHHHHHHHh---CC-CCcEEEEeC-CCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 899999998877443333332 12 222333333 23333344556678889999999999999988876643
No 263
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=71.50 E-value=23 Score=33.85 Aligned_cols=118 Identities=15% Similarity=0.117 Sum_probs=72.4
Q ss_pred cEEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCce
Q 001044 773 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 852 (1177)
Q Consensus 773 ~~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 852 (1177)
..+++.+.....+..+...+...|.....+.+...+...+ ...+..
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l----------------------------------~~~~~d 49 (155)
T 1qkk_A 4 PSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGL----------------------------------SADFAG 49 (155)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTC----------------------------------CTTCCS
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHH----------------------------------HhCCCC
Confidence 3467777788888888888888887665554433322110 012356
Q ss_pred EEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001044 853 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 928 (1177)
Q Consensus 853 ~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 928 (1177)
++++|..+.+.++..+-+.++ .......+.++... ..........+.|...++.||+....+...+..+...
T Consensus 50 liild~~l~~~~g~~~~~~l~---~~~~~~pii~ls~~-~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 121 (155)
T 1qkk_A 50 IVISDIRMPGMDGLALFRKIL---ALDPDLPMILVTGH-GDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEK 121 (155)
T ss_dssp EEEEESCCSSSCHHHHHHHHH---HHCTTSCEEEEECG-GGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHH---hhCCCCCEEEEECC-CChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Confidence 889999988877643333332 22222333333332 2233344556678889999999999999888877653
No 264
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=69.94 E-value=26 Score=37.13 Aligned_cols=117 Identities=14% Similarity=0.094 Sum_probs=76.1
Q ss_pred cEEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCce
Q 001044 773 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 852 (1177)
Q Consensus 773 ~~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 852 (1177)
..+++.++....+..+...+...|..+..+.+...+...+.. .+.+
T Consensus 38 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~----------------------------------~~~D 83 (249)
T 3q9s_A 38 QRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKARE----------------------------------DHPD 83 (249)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH----------------------------------SCCS
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc----------------------------------CCCC
Confidence 457888888888888888888887766555544443322211 2357
Q ss_pred EEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001044 853 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 928 (1177)
Q Consensus 853 ~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 928 (1177)
++++|+.++++++..+-+.++. . .... +++..............+.|.+.++.||+....+...+..+..+
T Consensus 84 lvllD~~lp~~~G~~l~~~lr~---~-~~~~-iI~lt~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~ 154 (249)
T 3q9s_A 84 LILLDLGLPDFDGGDVVQRLRK---N-SALP-IIVLTARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQ 154 (249)
T ss_dssp EEEEECCSCHHHHHHHHHHHHT---T-CCCC-EEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCC
T ss_pred EEEEcCCCCCCCHHHHHHHHHc---C-CCCC-EEEEECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhh
Confidence 8999999988776443333332 1 1222 33333333334445566778999999999999999998887654
No 265
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=69.43 E-value=32 Score=35.17 Aligned_cols=117 Identities=13% Similarity=0.051 Sum_probs=72.4
Q ss_pred EEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCceE
Q 001044 774 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 853 (1177)
Q Consensus 774 ~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 853 (1177)
.+++.++....+..+...+...|.....+.+...+...+. ..+.++
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~----------------------------------~~~~dl 49 (225)
T 1kgs_A 4 RVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMAL----------------------------------NEPFDV 49 (225)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH----------------------------------HSCCSE
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh----------------------------------cCCCCE
Confidence 4667777777788888888877766555444333332221 123578
Q ss_pred EEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001044 854 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 928 (1177)
Q Consensus 854 v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 928 (1177)
+++|..+++.++..+-+.++ .......+..+ .............+.|...++.||+....+...+..+..+
T Consensus 50 vllD~~l~~~~g~~~~~~lr---~~~~~~~ii~l-s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 120 (225)
T 1kgs_A 50 VILDIMLPVHDGWEILKSMR---ESGVNTPVLML-TALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRR 120 (225)
T ss_dssp EEEESCCSSSCHHHHHHHHH---HTTCCCCEEEE-ESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHH---hcCCCCCEEEE-eCCCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHhh
Confidence 89999999887643333332 22222223333 3222223344556678889999999999999988887654
No 266
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=68.59 E-value=31 Score=32.24 Aligned_cols=118 Identities=11% Similarity=0.181 Sum_probs=64.8
Q ss_pred EEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCceE
Q 001044 774 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 853 (1177)
Q Consensus 774 ~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 853 (1177)
.+++.+.....+..+..++... .....+.+...+...+.. .+..+
T Consensus 5 ~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~----------------------------------~~~dl 49 (140)
T 3n53_A 5 KILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDH----------------------------------HHPDL 49 (140)
T ss_dssp EEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHH----------------------------------HCCSE
T ss_pred EEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhc----------------------------------CCCCE
Confidence 4677777777788888888766 444444444333332211 13468
Q ss_pred EEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001044 854 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 928 (1177)
Q Consensus 854 v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 928 (1177)
+++|..+.+.++..+-+.++..... ....+..+ .............+.|...++.||+....+...+..+..+
T Consensus 50 vi~D~~l~~~~g~~~~~~l~~~~~~-~~~~ii~~-s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 122 (140)
T 3n53_A 50 VILDMDIIGENSPNLCLKLKRSKGL-KNVPLILL-FSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRT 122 (140)
T ss_dssp EEEETTC------CHHHHHHTSTTC-TTCCEEEE-ECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCcHHHHHHHHHcCccc-CCCCEEEE-ecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhh
Confidence 8999988887764433333322111 12222222 2222223334455678889999999999999998887654
No 267
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=67.16 E-value=37 Score=34.33 Aligned_cols=116 Identities=15% Similarity=0.162 Sum_probs=73.5
Q ss_pred cEEEEeecChhHHHHHHHHHHhccceee-eccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCc
Q 001044 773 TVVVLATVGSMERMIISQWLRKKKVSTL-ETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPV 851 (1177)
Q Consensus 773 ~~v~~~~~~~~~r~~~~~~l~~~g~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 851 (1177)
..+++.+.....+..+...+...|.... .+.....+...+.. .+.
T Consensus 14 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~----------------------------------~~~ 59 (205)
T 1s8n_A 14 RRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAEL----------------------------------HKP 59 (205)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----------------------------------HCC
T ss_pred ccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhh----------------------------------cCC
Confidence 4678888888888888888888777655 44444443332221 134
Q ss_pred eEEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001044 852 YVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 927 (1177)
Q Consensus 852 ~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 927 (1177)
.++++|+.++++++..+-+.++. .... .+.++.. ...........+.|...++.||+....+...+..+..
T Consensus 60 dlvi~D~~~p~~~g~~~~~~l~~---~~~~-pii~lt~-~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 130 (205)
T 1s8n_A 60 DLVIMDVKMPRRDGIDAASEIAS---KRIA-PIVVLTA-FSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVS 130 (205)
T ss_dssp SEEEEESSCSSSCHHHHHHHHHH---TTCS-CEEEEEE-GGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCChHHHHHHHHh---cCCC-CEEEEec-CCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 68899999999887543333322 1122 2222222 2223334455667888899999999999988877654
No 268
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=66.25 E-value=32 Score=32.02 Aligned_cols=116 Identities=10% Similarity=0.054 Sum_probs=67.8
Q ss_pred CCcEEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCC
Q 001044 771 PNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 850 (1177)
Q Consensus 771 ~~~~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 850 (1177)
+...+++.+.....+..+...+...|.....+.+...+...+ .. ..+
T Consensus 14 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l--------------------------------~~-~~~ 60 (138)
T 2b4a_A 14 QPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHR--------------------------------SQ-LST 60 (138)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTG--------------------------------GG-GGS
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHH--------------------------------Hh-CCC
Confidence 455688888888888888888888877655544433322211 00 023
Q ss_pred ceEEEEEecccccChhHHHHHhhhhhhhhccceeeeee-ccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001044 851 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVV-NHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 927 (1177)
Q Consensus 851 ~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 927 (1177)
..++++|..+.+.++..+-+.++. ......+.++. ....... ...+ ...++.||+....+...+.....
T Consensus 61 ~dlvilD~~l~~~~g~~~~~~l~~---~~~~~~ii~ls~~~~~~~~-~~~~----~~~~l~KP~~~~~L~~~i~~~~~ 130 (138)
T 2b4a_A 61 CDLLIVSDQLVDLSIFSLLDIVKE---QTKQPSVLILTTGRHELIE-SSEH----NLSYLQKPFAISELRAAIDYHKP 130 (138)
T ss_dssp CSEEEEETTCTTSCHHHHHHHHTT---SSSCCEEEEEESCC--CCC-CSSS----CEEEEESSCCHHHHHHHHHHTCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh---hCCCCCEEEEECCCCCHHH-HHHH----HHheeeCCCCHHHHHHHHHHHHH
Confidence 568889999988776443333332 22223333333 2222222 2112 56789999999999888876544
No 269
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=65.62 E-value=56 Score=33.17 Aligned_cols=117 Identities=12% Similarity=0.104 Sum_probs=71.5
Q ss_pred EEEEeecChhHHHHHHHHHHhcc-cee-eeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCc
Q 001044 774 VVVLATVGSMERMIISQWLRKKK-VST-LETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPV 851 (1177)
Q Consensus 774 ~v~~~~~~~~~r~~~~~~l~~~g-~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 851 (1177)
.+++.++....+..+..++...+ ... ..+.+...+...+.. .+.
T Consensus 7 ~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~~----------------------------------~~~ 52 (215)
T 1a04_A 7 TILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAES----------------------------------LDP 52 (215)
T ss_dssp EEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHH----------------------------------HCC
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHh----------------------------------cCC
Confidence 56777888888888888887754 443 334433333322211 134
Q ss_pred eEEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001044 852 YVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 928 (1177)
Q Consensus 852 ~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 928 (1177)
+++++|..++++++..+-+.++. ......+. +..............+.|.+.++.||+....+...+..+..+
T Consensus 53 dlvllD~~lp~~~g~~~~~~lr~---~~~~~~ii-~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 125 (215)
T 1a04_A 53 DLILLDLNMPGMNGLETLDKLRE---KSLSGRIV-VFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAG 125 (215)
T ss_dssp SEEEEETTSTTSCHHHHHHHHHH---SCCCSEEE-EEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHS
T ss_pred CEEEEeCCCCCCcHHHHHHHHHH---hCCCCcEE-EEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHcC
Confidence 78899999999877443333322 12222232 333333334445556678899999999999999998887654
No 270
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=65.00 E-value=60 Score=30.15 Aligned_cols=122 Identities=14% Similarity=0.079 Sum_probs=72.2
Q ss_pred EEEEeecChhHHHHHHHHHHhccc--eeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCc
Q 001044 774 VVVLATVGSMERMIISQWLRKKKV--STLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPV 851 (1177)
Q Consensus 774 ~v~~~~~~~~~r~~~~~~l~~~g~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 851 (1177)
.+++.+.....+..+...+...|. ....+.....+...++... .....+.
T Consensus 9 ~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~----------------------------~~~~~~~ 60 (143)
T 2qvg_A 9 DILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRN----------------------------KENKIHP 60 (143)
T ss_dssp SEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCT----------------------------TCCCCCC
T ss_pred eEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcc----------------------------cccCCCC
Confidence 467777788888888888888776 5555555444433332100 0001345
Q ss_pred eEEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHH
Q 001044 852 YVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETA 925 (1177)
Q Consensus 852 ~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~ 925 (1177)
.++++|..+.+.++..+-+.++..... ....+ ++..............+.|...++.||+....+...+...
T Consensus 61 dlii~D~~l~~~~g~~~~~~l~~~~~~-~~~~i-i~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~ 132 (143)
T 2qvg_A 61 KLILLDINIPKMNGIEFLKELRDDSSF-TDIEV-FVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWIL 132 (143)
T ss_dssp SEEEEETTCTTSCHHHHHHHHTTSGGG-TTCEE-EEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHH
T ss_pred CEEEEecCCCCCCHHHHHHHHHcCccc-cCCcE-EEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHH
Confidence 788999998887764433333322111 12222 2333333334455566788889999999999988876553
No 271
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=63.85 E-value=84 Score=32.20 Aligned_cols=113 Identities=14% Similarity=0.114 Sum_probs=69.3
Q ss_pred EEEEEecCh--HHHHHHHHHHhhcCCEEEEE----cCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeC
Q 001044 1023 RILLAEDTP--LIQIVACKILEKVGATVSVV----PDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDC 1096 (1177)
Q Consensus 1023 ~ILIVdD~~--~~~~~l~~~L~~~G~~v~~a----~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi 1096 (1177)
..+++-+.+ .....+...+++.|..+... .+..+.++.+.. ...|.|.++
T Consensus 79 d~v~v~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~t~~~~~~~~~~-----------------------~g~d~i~v~- 134 (211)
T 3f4w_A 79 DYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEE-----------------------AGADMLAVH- 134 (211)
T ss_dssp SEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHH-----------------------HTCCEEEEE-
T ss_pred CEEEEeCCCChhHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHH-----------------------cCCCEEEEc-
Confidence 344444443 33345566677778877653 333233333322 147878776
Q ss_pred CCCCC-------CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE-----CCCCHHHHHHHHHHH
Q 001044 1097 QMPKM-------DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT-----KPIDSERMVSTILRL 1164 (1177)
Q Consensus 1097 ~MP~m-------dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~-----KP~~~~~L~~~I~~l 1164 (1177)
|+. .+++.++++|+.. .++||++--+- ..++..+++++|+|.++. |.-++.+....+++.
T Consensus 135 --~g~~g~~~~~~~~~~i~~l~~~~-----~~~~i~~~gGI-~~~~~~~~~~~Gad~vvvGsai~~~~d~~~~~~~l~~~ 206 (211)
T 3f4w_A 135 --TGTDQQAAGRKPIDDLITMLKVR-----RKARIAVAGGI-SSQTVKDYALLGPDVVIVGSAITHAADPAGEARKISQV 206 (211)
T ss_dssp --CCHHHHHTTCCSHHHHHHHHHHC-----SSCEEEEESSC-CTTTHHHHHTTCCSEEEECHHHHTCSSHHHHHHHHHHH
T ss_pred --CCCcccccCCCCHHHHHHHHHHc-----CCCcEEEECCC-CHHHHHHHHHcCCCEEEECHHHcCCCCHHHHHHHHHHH
Confidence 332 3577888888652 24888776555 478888999999999875 555776666666665
Q ss_pred hhc
Q 001044 1165 TKN 1167 (1177)
Q Consensus 1165 ~~~ 1167 (1177)
++.
T Consensus 207 ~~~ 209 (211)
T 3f4w_A 207 LLQ 209 (211)
T ss_dssp HHH
T ss_pred Hhh
Confidence 543
No 272
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=63.69 E-value=70 Score=34.82 Aligned_cols=84 Identities=19% Similarity=0.120 Sum_probs=58.6
Q ss_pred HHHHHhhcCCEEE-EEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEe---CCCCCCCHHHHHHHHHh
Q 001044 1037 ACKILEKVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMD---CQMPKMDGYEATIEIRK 1112 (1177)
Q Consensus 1037 l~~~L~~~G~~v~-~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmD---i~MP~mdG~e~~r~IR~ 1112 (1177)
+.......|..+. .+.|.+|+..+++. ..|+|-.- ...... +++.++++++
T Consensus 154 l~~~a~~lGl~~lvev~t~ee~~~A~~~------------------------Gad~IGv~~r~l~~~~~-dl~~~~~l~~ 208 (272)
T 3qja_A 154 MLDRTESLGMTALVEVHTEQEADRALKA------------------------GAKVIGVNARDLMTLDV-DRDCFARIAP 208 (272)
T ss_dssp HHHHHHHTTCEEEEEESSHHHHHHHHHH------------------------TCSEEEEESBCTTTCCB-CTTHHHHHGG
T ss_pred HHHHHHHCCCcEEEEcCCHHHHHHHHHC------------------------CCCEEEECCCccccccc-CHHHHHHHHH
Confidence 3444556788754 57888886665532 46777664 222222 3677778876
Q ss_pred cccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1113 SESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1113 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
.-+ .++|+|+-.+-.+.++..++.++|+|+++.
T Consensus 209 ~v~----~~~pvVaegGI~t~edv~~l~~~GadgvlV 241 (272)
T 3qja_A 209 GLP----SSVIRIAESGVRGTADLLAYAGAGADAVLV 241 (272)
T ss_dssp GSC----TTSEEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred hCc----ccCEEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 432 258999999999999999999999999997
No 273
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=63.56 E-value=57 Score=37.63 Aligned_cols=102 Identities=20% Similarity=0.162 Sum_probs=66.7
Q ss_pred CcEEEEEec----ChHHHHHHHHHHhhcCCEEE--EEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEE
Q 001044 1021 GLRILLAED----TPLIQIVACKILEKVGATVS--VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILM 1094 (1177)
Q Consensus 1021 g~~ILIVdD----~~~~~~~l~~~L~~~G~~v~--~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlm 1094 (1177)
|..++++|- .....+.++.+-+..+..|. .+.+.++|..+.+. ..|.|..
T Consensus 156 GvdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~V~t~e~A~~a~~a------------------------GAD~I~v 211 (400)
T 3ffs_A 156 GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIEN------------------------GADGIKV 211 (400)
T ss_dssp TCSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEEECSHHHHHHHHHT------------------------TCSEEEE
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEeecCCHHHHHHHHHc------------------------CCCEEEE
Confidence 456777642 22334445444444577665 47888888887752 5788877
Q ss_pred eCC------C-----CCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1095 DCQ------M-----PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1095 Di~------M-----P~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
-.. . .+...++++..+++.... .++|||+--+-.+..+..+++.+|||....
T Consensus 212 G~g~Gs~~~tr~~~g~g~p~~~al~~v~~~~~~---~~IPVIA~GGI~~~~di~kalalGAd~V~v 274 (400)
T 3ffs_A 212 GIGPGSICTTRIVAGVGVPQITAIEKCSSVASK---FGIPIIADGGIRYSGDIGKALAVGASSVMI 274 (400)
T ss_dssp CC---------CCSCBCCCHHHHHHHHHHHHTT---TTCCEEEESCCCSHHHHHHHHTTTCSEEEE
T ss_pred eCCCCcCcccccccccchhHHHHHHHHHHHHHh---cCCCEEecCCCCCHHHHHHHHHcCCCEEEE
Confidence 311 0 012346777777654221 359999988888999999999999998763
No 274
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=63.12 E-value=38 Score=32.15 Aligned_cols=118 Identities=14% Similarity=0.125 Sum_probs=64.6
Q ss_pred EEEEeecChhHHHHHHHHHHhc-cc-eeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCc
Q 001044 774 VVVLATVGSMERMIISQWLRKK-KV-STLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPV 851 (1177)
Q Consensus 774 ~v~~~~~~~~~r~~~~~~l~~~-g~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 851 (1177)
.+++.+.....+..+...+... |. ....+.+...+...+.. ..+.
T Consensus 5 ~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~---------------------------------~~~~ 51 (154)
T 2qsj_A 5 VVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEA---------------------------------DNTV 51 (154)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHT---------------------------------TCCC
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhc---------------------------------cCCC
Confidence 4667777777788888888776 65 34444444433332211 0235
Q ss_pred eEEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001044 852 YVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 928 (1177)
Q Consensus 852 ~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 928 (1177)
.++++|..+.+.++..+-+.++ .......+.++ .............+.|...++.||+....+...+..+..+
T Consensus 52 dlvi~d~~l~~~~g~~~~~~l~---~~~~~~~ii~l-s~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~ 124 (154)
T 2qsj_A 52 DLILLDVNLPDAEAIDGLVRLK---RFDPSNAVALI-SGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEG 124 (154)
T ss_dssp SEEEECC------CHHHHHHHH---HHCTTSEEEEC------CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTT
T ss_pred CEEEEeCCCCCCchHHHHHHHH---HhCCCCeEEEE-eCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcC
Confidence 6888898888776543333222 22222233333 2223334445556778888999999999999988887654
No 275
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=62.41 E-value=49 Score=37.78 Aligned_cols=115 Identities=17% Similarity=0.174 Sum_probs=73.3
Q ss_pred EEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCceEE
Q 001044 775 VVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVV 854 (1177)
Q Consensus 775 v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v 854 (1177)
+++.++....+..+..++...|..+..+.+...+...+.. .+++++
T Consensus 3 ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~----------------------------------~~~Dlv 48 (387)
T 1ny5_A 3 VLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSE----------------------------------KHFNVV 48 (387)
T ss_dssp EEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHH----------------------------------SCCSEE
T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh----------------------------------CCCCEE
Confidence 5667777777888888888878766655554444333221 235789
Q ss_pred EEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001044 855 VIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 927 (1177)
Q Consensus 855 ~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 927 (1177)
++|+.++++++..+-+.++ .......+. +...........+..+.|...++.||+....+...+..+..
T Consensus 49 llD~~mp~~dG~ell~~lr---~~~~~~pvI-vlT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~ 117 (387)
T 1ny5_A 49 LLDLLLPDVNGLEILKWIK---ERSPETEVI-VITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIE 117 (387)
T ss_dssp EEESBCSSSBHHHHHHHHH---HHCTTSEEE-EEEETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH---hhCCCCcEE-EEeCCCCHHHHHHHHhcCceEEecCCCCHHHHHHHHHHHHH
Confidence 9999999988744333332 222222333 33333333444556678889999999999998887776553
No 276
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=62.33 E-value=63 Score=40.13 Aligned_cols=118 Identities=15% Similarity=0.057 Sum_probs=80.5
Q ss_pred CcEEEEE----ecChHHHHHHHHHHhhcCCEEEEE---cCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001044 1021 GLRILLA----EDTPLIQIVACKILEKVGATVSVV---PDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1093 (1177)
Q Consensus 1021 g~~ILIV----dD~~~~~~~l~~~L~~~G~~v~~a---~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIl 1093 (1177)
..+|+++ |.+..-..++..+|+..||+|+.- ...++.++.+.+ ..+|+|.
T Consensus 596 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e-----------------------~~adiVg 652 (727)
T 1req_A 596 RPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVE-----------------------ADVHVVG 652 (727)
T ss_dssp CCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBCHHHHHHHHHH-----------------------TTCSEEE
T ss_pred CCEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHH-----------------------cCCCEEE
Confidence 4578876 566666778888999999999764 245777777654 3799999
Q ss_pred EeCCCCCC-C-HHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001044 1094 MDCQMPKM-D-GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1166 (1177)
Q Consensus 1094 mDi~MP~m-d-G~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~ 1166 (1177)
+-..|..- . .-++.+.+|+. +..+++|++ -+-.-..+...+.++|+|+|..---+..++...+...++
T Consensus 653 lSsl~~~~~~~~~~vi~~L~~~----G~~~i~Viv-GG~~p~~d~~~l~~~GaD~~f~~gt~~~e~a~~l~~~l~ 722 (727)
T 1req_A 653 VSSLAGGHLTLVPALRKELDKL----GRPDILITV-GGVIPEQDFDELRKDGAVEIYTPGTVIPESAISLVKKLR 722 (727)
T ss_dssp EEECSSCHHHHHHHHHHHHHHT----TCTTSEEEE-EESCCGGGHHHHHHTTEEEEECTTCCHHHHHHHHHHHHH
T ss_pred EeeecHhHHHHHHHHHHHHHhc----CCCCCEEEE-cCCCccccHHHHHhCCCCEEEcCCccHHHHHHHHHHHHH
Confidence 98877532 2 24556666654 223555544 433334466778899999999866777777777766653
No 277
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=61.95 E-value=76 Score=34.13 Aligned_cols=113 Identities=10% Similarity=0.055 Sum_probs=75.2
Q ss_pred CcEEEEE----ecChHHHHHHHHHHhhcCCEEEEE---cCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001044 1021 GLRILLA----EDTPLIQIVACKILEKVGATVSVV---PDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1093 (1177)
Q Consensus 1021 g~~ILIV----dD~~~~~~~l~~~L~~~G~~v~~a---~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIl 1093 (1177)
+.+||++ |-+..-..++..+|+..||+|... ...++.++.+.+ ..||+|.
T Consensus 123 ~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~-----------------------~~~d~V~ 179 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQK-----------------------EKPIMLT 179 (258)
T ss_dssp SCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHH-----------------------HCCSEEE
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-----------------------cCCCEEE
Confidence 4578888 777788889999999999998643 345566666654 3799999
Q ss_pred EeCCCCC-CCH-HHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 001044 1094 MDCQMPK-MDG-YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1167 (1177)
Q Consensus 1094 mDi~MP~-mdG-~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~ 1167 (1177)
+-+.|+. +.. -++.+++|+.. .++||++--+.... +. +-+.|+|.|-. +..+....+.+++..
T Consensus 180 lS~l~~~~~~~~~~~i~~l~~~~-----~~~~v~vGG~~~~~-~~--~~~igad~~~~---da~~av~~~~~l~~~ 244 (258)
T 2i2x_B 180 GTALMTTTMYAFKEVNDMLLENG-----IKIPFACGGGAVNQ-DF--VSQFALGVYGE---EAADAPKIADAIIAG 244 (258)
T ss_dssp EECCCTTTTTHHHHHHHHHHTTT-----CCCCEEEESTTCCH-HH--HHTSTTEEECS---STTHHHHHHHHHHTT
T ss_pred EEeeccCCHHHHHHHHHHHHhcC-----CCCcEEEECccCCH-HH--HHHcCCeEEEC---CHHHHHHHHHHHHcc
Confidence 9998764 332 35666777532 24777665544443 33 34789988865 445556666666643
No 278
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=61.92 E-value=48 Score=34.36 Aligned_cols=111 Identities=15% Similarity=0.124 Sum_probs=70.8
Q ss_pred CcEEEEE----ecChHHHHHHHHHHhhcCCEEEEEc---CHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001044 1021 GLRILLA----EDTPLIQIVACKILEKVGATVSVVP---DGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1093 (1177)
Q Consensus 1021 g~~ILIV----dD~~~~~~~l~~~L~~~G~~v~~a~---nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIl 1093 (1177)
+.+||++ |-+..-...+..+|+..||+|.... ..++.++.+.+ ..||+|.
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~-----------------------~~~d~v~ 144 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKK-----------------------YQPDIVG 144 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHH-----------------------HCCSEEE
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-----------------------cCCCEEE
Confidence 3478888 7778888899999999999998653 34455555543 3799999
Q ss_pred EeCCCCCC-CH-HHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Q 001044 1094 MDCQMPKM-DG-YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILR 1163 (1177)
Q Consensus 1094 mDi~MP~m-dG-~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~ 1163 (1177)
+-..|+.- +. -++.+.+|+... .+++||++--+.... +. +.+.|+|.|-. +..+......+
T Consensus 145 lS~~~~~~~~~~~~~i~~l~~~~~---~~~~~v~vGG~~~~~-~~--~~~~gad~~~~---da~~av~~~~~ 207 (210)
T 1y80_A 145 MSALLTTTMMNMKSTIDALIAAGL---RDRVKVIVGGAPLSQ-DF--ADEIGADGYAP---DAASATELCRQ 207 (210)
T ss_dssp EECCSGGGTHHHHHHHHHHHHTTC---GGGCEEEEESTTCCH-HH--HHHHTCSEECS---SHHHHHHHHHH
T ss_pred EeccccccHHHHHHHHHHHHhcCC---CCCCeEEEECCCCCH-HH--HHHcCCeEEEC---CHHHHHHHHHH
Confidence 99987642 22 345566665321 134777765554443 22 35679998754 44444444433
No 279
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=61.01 E-value=47 Score=35.62 Aligned_cols=89 Identities=12% Similarity=0.044 Sum_probs=62.5
Q ss_pred EEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC-------CCHHHHHHHHHhcccccCCCC
Q 001044 1049 SVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK-------MDGYEATIEIRKSESEHGARN 1121 (1177)
Q Consensus 1049 ~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~-------mdG~e~~r~IR~~~~~~~~~~ 1121 (1177)
..+.+.+|+..+.. ...|+|...--.|. .-|++.++++++... .+
T Consensus 140 ~S~ht~~Ea~~A~~------------------------~GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~~----~~ 191 (243)
T 3o63_A 140 RSTHDPDQVAAAAA------------------------GDADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGG----DD 191 (243)
T ss_dssp EEECSHHHHHHHHH------------------------SSCSEEEECCSSCCCC-----CCCHHHHHHHHTC-------C
T ss_pred EeCCCHHHHHHHhh------------------------CCCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhcc----CC
Confidence 35788888877664 25899988543332 237888888886411 25
Q ss_pred cceEEEecCCCHHHHHHHHHcCCCEEEE-----CCCCHHHHHHHHHHHhh
Q 001044 1122 IPIVALTAHAMNADEKKCLGVGMNAYLT-----KPIDSERMVSTILRLTK 1166 (1177)
Q Consensus 1122 ipIIalTa~~~~~~~~~~l~aG~d~yL~-----KP~~~~~L~~~I~~l~~ 1166 (1177)
+|||++-+- ..++..+++++|+|.+.. +.-++.+-...+.+.++
T Consensus 192 iPvvAiGGI-~~~ni~~~~~aGa~gvav~sai~~a~dp~~a~~~l~~~~~ 240 (243)
T 3o63_A 192 KPWFAIGGI-NAQRLPAVLDAGARRIVVVRAITSADDPRAAAEQLRSALT 240 (243)
T ss_dssp CCEEEESSC-CTTTHHHHHHTTCCCEEESHHHHTCSSHHHHHHHHHHHHH
T ss_pred CCEEEecCC-CHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHHHH
Confidence 899999887 667888999999999875 55566666666665554
No 280
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=60.62 E-value=99 Score=28.05 Aligned_cols=117 Identities=12% Similarity=0.099 Sum_probs=69.1
Q ss_pred cEEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCce
Q 001044 773 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 852 (1177)
Q Consensus 773 ~~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 852 (1177)
..+++.+.....+..+...+...|.....+.+...+...+.. ..+..
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~---------------------------------~~~~d 52 (132)
T 2rdm_A 6 VTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKS---------------------------------GAAID 52 (132)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHT---------------------------------TCCCC
T ss_pred ceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHc---------------------------------CCCCC
Confidence 457778888888888888888878766655544443332211 01346
Q ss_pred EEEEEecccc-cChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001044 853 VVVIDIALLD-LSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 928 (1177)
Q Consensus 853 ~v~id~~l~d-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 928 (1177)
++++|..+.+ .++..+-+.++ .......+.++........... ....| .++.||+....+...+..+..+
T Consensus 53 lvi~d~~l~~~~~g~~~~~~l~---~~~~~~~ii~~s~~~~~~~~~~-~~~~~--~~l~kP~~~~~l~~~i~~~~~~ 123 (132)
T 2rdm_A 53 GVVTDIRFCQPPDGWQVARVAR---EIDPNMPIVYISGHAALEWASN-GVPDS--IILEKPFTSAQLITAVSQLLNA 123 (132)
T ss_dssp EEEEESCCSSSSCHHHHHHHHH---HHCTTCCEEEEESSCCTTHHHH-SCTTC--EEEESSCCHHHHHHHHHHHHHT
T ss_pred EEEEeeeCCCCCCHHHHHHHHH---hcCCCCCEEEEeCCccHHHHHh-hcCCc--ceEeCCCCHHHHHHHHHHHHhc
Confidence 8889998887 76643333332 2222333344433333322222 22222 5899999999999988877654
No 281
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=60.58 E-value=74 Score=30.05 Aligned_cols=126 Identities=8% Similarity=0.052 Sum_probs=71.6
Q ss_pred cEEEEeecChhHHHHHHHHHHhccc--eeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCC
Q 001044 773 TVVVLATVGSMERMIISQWLRKKKV--STLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 850 (1177)
Q Consensus 773 ~~v~~~~~~~~~r~~~~~~l~~~g~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 850 (1177)
..+++.+.....+..+...+...|. ....+.+...+...++... .......
T Consensus 9 ~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~---------------------------~~~~~~~ 61 (149)
T 1i3c_A 9 KVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQG---------------------------EYENSPR 61 (149)
T ss_dssp EEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCG---------------------------GGTTCCC
T ss_pred CeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhcc---------------------------ccccCCC
Confidence 3577788888888888888887664 3333443333322221000 0000123
Q ss_pred ceEEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001044 851 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 927 (1177)
Q Consensus 851 ~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 927 (1177)
..++++|+.++++++..+-+.++..... ....+. +..............+.|...++.||+....+...+..+..
T Consensus 62 ~dlillD~~lp~~~g~~l~~~l~~~~~~-~~~pii-ils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 136 (149)
T 1i3c_A 62 PNLILLDLNLPKKDGREVLAEIKQNPDL-KRIPVV-VLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIES 136 (149)
T ss_dssp CSEEEECSCCSSSCHHHHHHHHHHCTTT-TTSCEE-EEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHhCcCc-CCCeEE-EEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 4788999999998875433333321111 122222 33322333334455567888999999999999988877643
No 282
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=60.30 E-value=1.1e+02 Score=28.38 Aligned_cols=116 Identities=13% Similarity=0.226 Sum_probs=69.1
Q ss_pred cEEEEeecChhHHHHHHHHHHhc-cceee-eccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCC
Q 001044 773 TVVVLATVGSMERMIISQWLRKK-KVSTL-ETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 850 (1177)
Q Consensus 773 ~~v~~~~~~~~~r~~~~~~l~~~-g~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 850 (1177)
..+++.+.....+..+...+... +.... .+.+...+...+.. .+
T Consensus 10 ~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~----------------------------------~~ 55 (143)
T 2qv0_A 10 MKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQH----------------------------------NK 55 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHH----------------------------------CC
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh----------------------------------CC
Confidence 35677777887788888888765 54422 33333333222211 23
Q ss_pred ceEEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001044 851 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 928 (1177)
Q Consensus 851 ~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 928 (1177)
..++++|..+.+.++..+-+.++. ......+.++... . .......+.|...++.||+....+...+..+...
T Consensus 56 ~dlvi~d~~l~~~~g~~~~~~l~~---~~~~~~ii~~s~~--~-~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (143)
T 2qv0_A 56 VDAIFLDINIPSLDGVLLAQNISQ---FAHKPFIVFITAW--K-EHAVEAFELEAFDYILKPYQESRIINMLQKLTTA 127 (143)
T ss_dssp CSEEEECSSCSSSCHHHHHHHHTT---STTCCEEEEEESC--C-TTHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCCCCHHHHHHHHHc---cCCCceEEEEeCC--H-HHHHHHHhCCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 578899999888776443333332 2222223333322 1 2334455678888999999999999888876653
No 283
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=60.01 E-value=95 Score=29.97 Aligned_cols=105 Identities=15% Similarity=0.093 Sum_probs=61.0
Q ss_pred cEEEEeecChhHHHHHHHHHHhcc-ce-eeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCC
Q 001044 773 TVVVLATVGSMERMIISQWLRKKK-VS-TLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 850 (1177)
Q Consensus 773 ~~v~~~~~~~~~r~~~~~~l~~~g-~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 850 (1177)
..+++.+.....+..+..++...+ .. ...+.+...+...+.. .+
T Consensus 26 ~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~----------------------------------~~ 71 (164)
T 3t8y_A 26 IRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIE----------------------------------LK 71 (164)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHH----------------------------------HC
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhcc----------------------------------CC
Confidence 457888888888888888888764 22 2233333333322211 13
Q ss_pred ceEEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCC-chhhhhhhhcCCcEEEeccCCh
Q 001044 851 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTT-SPIKTELSREGQNIVVTKPLYK 915 (1177)
Q Consensus 851 ~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~kP~~~ 915 (1177)
..++++|..+.+.++..+-+.++. ... ..+.++...... ........+.|...++.||+..
T Consensus 72 ~dlvilD~~l~~~~g~~l~~~lr~---~~~-~~ii~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~~ 133 (164)
T 3t8y_A 72 PDVITMDIEMPNLNGIEALKLIMK---KAP-TRVIMVSSLTEEGAAITIEALRNGAVDFITKPHGS 133 (164)
T ss_dssp CSEEEECSSCSSSCHHHHHHHHHH---HSC-CEEEEEESSCCTTCHHHHHHHHTTCCEEEECSSSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh---cCC-ceEEEEecCCccchHHHHHHHHcCcCEEEeCCCCH
Confidence 468899999998877544333332 222 223333322222 2234456678889999999983
No 284
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=59.40 E-value=47 Score=31.22 Aligned_cols=110 Identities=15% Similarity=0.171 Sum_probs=64.1
Q ss_pred CcEEEEeecChhHHHHHHHHHHhc-cceee-eccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccC
Q 001044 772 NTVVVLATVGSMERMIISQWLRKK-KVSTL-ETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALID 849 (1177)
Q Consensus 772 ~~~v~~~~~~~~~r~~~~~~l~~~-g~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (1177)
...+++.+.....+..+..+++.. +.... .+.+...+...+.. ..
T Consensus 13 ~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~---------------------------------~~ 59 (145)
T 3kyj_B 13 PYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAA---------------------------------QP 59 (145)
T ss_dssp SEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHH---------------------------------CT
T ss_pred CCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHhc---------------------------------CC
Confidence 456888888888888999998887 65543 44444443332211 11
Q ss_pred CceEEEEEecccccChhHHHHHhhhhhhhhccceeeeeec-cCCCchhhhhhhhcCCcEEEeccCChhHH
Q 001044 850 PVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVN-HQTTSPIKTELSREGQNIVVTKPLYKGKM 918 (1177)
Q Consensus 850 p~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~kP~~~~~l 918 (1177)
++.++++|..+.++++..+-+.++. ... ..+..+.. ............+.|...++.||+....+
T Consensus 60 ~~dlvilD~~l~~~~g~~~~~~lr~---~~~-~~iiil~~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l 125 (145)
T 3kyj_B 60 NVDLILLDIEMPVMDGMEFLRHAKL---KTR-AKICMLSSVAVSGSPHAARARELGADGVVAKPSGTVSH 125 (145)
T ss_dssp TCCEEEECTTSCCCTTCHHHHHHHH---HCC-CEEC-CBSSCSTTSSHHHHHHHTTCSCCCBCCCSCC--
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh---cCC-CCeEEEEEeccCChHHHHHHHhCCCCEEEeCCCCHHHH
Confidence 3578999999999887544333332 112 22222222 12223334456677888899999985443
No 285
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=59.09 E-value=59 Score=29.42 Aligned_cols=118 Identities=11% Similarity=0.126 Sum_probs=67.6
Q ss_pred EEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCceE
Q 001044 774 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 853 (1177)
Q Consensus 774 ~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 853 (1177)
.+++.+.....+..+...+...|.....+.....+.. .+ ...+..+
T Consensus 4 ~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~----~~------------------------------~~~~~dl 49 (127)
T 2jba_A 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVN----QL------------------------------NEPWPDL 49 (127)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHT----TC------------------------------SSSCCSE
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHH----HH------------------------------hccCCCE
Confidence 4566777777777888888877765544433222111 00 0123468
Q ss_pred EEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001044 854 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 927 (1177)
Q Consensus 854 v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 927 (1177)
+++|..+++.++..+-+.++..... ....+.++.. ...........+.|...++.||+....+...+.....
T Consensus 50 vi~D~~l~~~~g~~~~~~l~~~~~~-~~~~ii~~s~-~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 121 (127)
T 2jba_A 50 ILLAWMLPGGSGIQFIKHLRRESMT-RDIPVVMLTA-RGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMR 121 (127)
T ss_dssp EEEESEETTEEHHHHHHHHHTSTTT-TTSCEEEEEE-TTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHH
T ss_pred EEEecCCCCCCHHHHHHHHHhCccc-CCCCEEEEeC-CCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHh
Confidence 8899999887764333333221111 1222233322 2222333445567888899999999999988877654
No 286
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=59.08 E-value=61 Score=30.35 Aligned_cols=74 Identities=9% Similarity=0.145 Sum_probs=42.7
Q ss_pred CceEEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001044 850 PVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 927 (1177)
Q Consensus 850 p~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 927 (1177)
+..++++|..++++++..+-+.++ .......+.++.. ...........+.|...++.||+....+...+..+..
T Consensus 49 ~~dlvllD~~lp~~~g~~l~~~l~---~~~~~~~ii~ls~-~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 122 (141)
T 3cu5_A 49 PPNVLLTDVRMPRMDGIELVDNIL---KLYPDCSVIFMSG-YSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQ 122 (141)
T ss_dssp CCSEEEEESCCSSSCHHHHHHHHH---HHCTTCEEEEECC-STTTCCC------CCCEEECSSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH---hhCCCCcEEEEeC-CCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHH
Confidence 457899999999887744333332 2222223333322 2222333445567888899999999999988877654
No 287
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=58.80 E-value=50 Score=40.14 Aligned_cols=117 Identities=15% Similarity=0.137 Sum_probs=77.0
Q ss_pred CcEEEEE----ecChHHHHHH----HHHHhhcCCEEEEEc---CHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCc
Q 001044 1021 GLRILLA----EDTPLIQIVA----CKILEKVGATVSVVP---DGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRF 1089 (1177)
Q Consensus 1021 g~~ILIV----dD~~~~~~~l----~~~L~~~G~~v~~a~---nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1089 (1177)
..+||++ |=+..-..++ ..+|+..||+|+-.. ..++.++++.+ ..+
T Consensus 602 kGKVVIATVgGD~HDIGKklVaNIVa~~LE~aGFEVIDLGvdVPpEeIVeAA~E-----------------------edA 658 (763)
T 3kp1_A 602 PLKIVAATVGEDEHSVGLREVIDIKHGGIEKYGVEVHYLGTSVPVEKLVDAAIE-----------------------LKA 658 (763)
T ss_dssp CCEEEEEEBTTCCCCHHHHHTTSTTTTCGGGGTCEEEECCSSBCHHHHHHHHHH-----------------------TTC
T ss_pred CCEEEEEeCCCChhhhhhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHH-----------------------cCC
Confidence 4689988 4444433333 468999999998643 56777777754 479
Q ss_pred cEEEEeCCCCC----CCHH-HHHHHHHhcccccCCC-CcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Q 001044 1090 DLILMDCQMPK----MDGY-EATIEIRKSESEHGAR-NIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILR 1163 (1177)
Q Consensus 1090 DLIlmDi~MP~----mdG~-e~~r~IR~~~~~~~~~-~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~ 1163 (1177)
|+|.+-+-|.. |... ++.+.+|+.. .. .+||++ -+..-..+ -+.+.|+|.|..-.....++...+..
T Consensus 659 DVVGLSsLLTt~dihL~~MkevIelLrE~G----lrDkIkVIV-GGa~~tqd--~AkeIGADa~f~DATeAVeVA~~Ll~ 731 (763)
T 3kp1_A 659 DAILASTIISHDDIHYKNMKRIHELAVEKG----IRDKIMIGC-GGTQVTPE--VAVKQGVDAGFGRGSKGIHVATFLVK 731 (763)
T ss_dssp SEEEEECCCCGGGHHHHHHHHHHHHHHHTT----CTTTSEEEE-ECTTCCHH--HHHTTTCSEEECTTCCHHHHHHHHHH
T ss_pred CEEEEeccccCchhhHHHHHHHHHHHHhcC----CCCCCEEEE-ECCCCCHH--HHHHcCCcEEECCcchHHHHHHHHHH
Confidence 99999998886 4443 3455566432 22 366655 34333333 34589999999888888888877766
Q ss_pred Hhhc
Q 001044 1164 LTKN 1167 (1177)
Q Consensus 1164 l~~~ 1167 (1177)
.++.
T Consensus 732 ~l~e 735 (763)
T 3kp1_A 732 KRRE 735 (763)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6643
No 288
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=58.64 E-value=1.1e+02 Score=34.78 Aligned_cols=101 Identities=14% Similarity=0.169 Sum_probs=66.0
Q ss_pred CcEEEEEe----cChHHHHHHHHHHhhc-CCEEE--EEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001044 1021 GLRILLAE----DTPLIQIVACKILEKV-GATVS--VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1093 (1177)
Q Consensus 1021 g~~ILIVd----D~~~~~~~l~~~L~~~-G~~v~--~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIl 1093 (1177)
|..++++| +.+...+.++.+-+.. +..|. .+.+.++|..+.+. ..|.|.
T Consensus 120 Gvd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~a------------------------GAD~I~ 175 (366)
T 4fo4_A 120 GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEA------------------------GVSAVK 175 (366)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHH------------------------TCSEEE
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHHc------------------------CCCEEE
Confidence 45567765 2333334444444444 55554 47889998887753 578888
Q ss_pred EeCCCCC------------CCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1094 MDCQMPK------------MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1094 mDi~MP~------------mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
.-+. |+ ...++++..+++.... .++|||+--+-.+..+..+++.+|||....
T Consensus 176 vG~g-pGs~~~tr~~~g~g~p~~~~l~~v~~~~~~---~~iPVIA~GGI~~~~di~kala~GAd~V~v 239 (366)
T 4fo4_A 176 VGIG-PGSICTTRIVTGVGVPQITAIADAAGVANE---YGIPVIADGGIRFSGDISKAIAAGASCVMV 239 (366)
T ss_dssp ECSS-CSTTBCHHHHHCCCCCHHHHHHHHHHHHGG---GTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred EecC-CCCCCCcccccCcccchHHHHHHHHHHHhh---cCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 7311 21 2346667777653222 359999988888899999999999998864
No 289
>3by8_A Sensor protein DCUS; histidine kinase sensor domain, inner membrane, membrane, phosphoprotein, transferase, transmembrane; 1.45A {Escherichia coli} SCOP: d.110.6.1 PDB: 1ojg_A
Probab=58.47 E-value=14 Score=35.89 Aligned_cols=38 Identities=26% Similarity=0.382 Sum_probs=30.9
Q ss_pred cCccceeeeccccCCCCCCCcEEEEEEeehhhhHHHHHHHH
Q 001044 285 TNSPLLSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKE 325 (1177)
Q Consensus 285 ~~~~~~~~~~pv~~~~~~~~~~~~v~gv~~~~~~i~~~l~~ 325 (1177)
...+.+.++.||++. +|+++||+.|...+..+...+..
T Consensus 102 ~~g~~~~~~~PV~~~---~g~viGvv~vg~~~~~~~~~~~~ 139 (142)
T 3by8_A 102 FLAQALRVFTPIYDE---NHKQIGVVAIGLELSRVTQQIND 139 (142)
T ss_dssp SSSCEEEEEEEEECT---TSCEEEEEEEEEEHHHHHHHHHC
T ss_pred ccEEEEEEEEeEEcC---CCCEEEEEEEeEEHHHHHHHHHH
Confidence 355788888899985 78999999999988888776543
No 290
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=56.52 E-value=42 Score=34.46 Aligned_cols=116 Identities=16% Similarity=0.111 Sum_probs=71.8
Q ss_pred EEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCceE
Q 001044 774 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 853 (1177)
Q Consensus 774 ~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 853 (1177)
.+++.+.....+..+...+...|.....+.+...+...+.. .+.++
T Consensus 6 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~----------------------------------~~~dl 51 (230)
T 2oqr_A 6 SVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDR----------------------------------AGADI 51 (230)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHH----------------------------------HCCSE
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc----------------------------------cCCCE
Confidence 46777778888888888888777765555444433322211 13468
Q ss_pred EEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001044 854 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 928 (1177)
Q Consensus 854 v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 928 (1177)
+++|..+++.++..+-+.++. . ....+..+.. ...........+.|...++.||+....+...+..+..+
T Consensus 52 vllD~~l~~~~g~~~~~~l~~---~-~~~~ii~lt~-~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (230)
T 2oqr_A 52 VLLDLMLPGMSGTDVCKQLRA---R-SSVPVIMVTA-RDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 121 (230)
T ss_dssp EEEESSCSSSCHHHHHHHHHH---H-CSCSEEEEEC-CHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCCHHHHHHHHHc---C-CCCCEEEEeC-CCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 899999998876443333332 1 1222222222 22222334455678888999999999999998887654
No 291
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=56.45 E-value=39 Score=35.45 Aligned_cols=100 Identities=11% Similarity=0.052 Sum_probs=65.8
Q ss_pred CcEEEEE----ecChHHHHHHHHHHhhcCCEEEEEc---CHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001044 1021 GLRILLA----EDTPLIQIVACKILEKVGATVSVVP---DGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1093 (1177)
Q Consensus 1021 g~~ILIV----dD~~~~~~~l~~~L~~~G~~v~~a~---nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIl 1093 (1177)
+.+||+. |-+..-..++..+|+..||+|..-. ..++.++.+.+ ..||+|.
T Consensus 92 ~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~-----------------------~~~d~v~ 148 (215)
T 3ezx_A 92 AGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAK-----------------------HKGEKVL 148 (215)
T ss_dssp CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHH-----------------------TTTSCEE
T ss_pred CCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHH-----------------------cCCCEEE
Confidence 3578887 6777888889999999999998643 45556666654 4799999
Q ss_pred E--eCCCC-CCCH-HHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1094 M--DCQMP-KMDG-YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1094 m--Di~MP-~mdG-~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
+ -+.|. .|+. -++.+.+|+... ..++||++--+-... + -|-+.|+|.|-.
T Consensus 149 l~~S~l~~~~~~~~~~~i~~l~~~~~---~~~v~v~vGG~~~~~-~--~a~~iGad~~~~ 202 (215)
T 3ezx_A 149 LVGSALMTTSMLGQKDLMDRLNEEKL---RDSVKCMFGGAPVSD-K--WIEEIGADATAE 202 (215)
T ss_dssp EEEECSSHHHHTHHHHHHHHHHHTTC---GGGSEEEEESSSCCH-H--HHHHHTCCBCCS
T ss_pred EEchhcccCcHHHHHHHHHHHHHcCC---CCCCEEEEECCCCCH-H--HHHHhCCeEEEC
Confidence 9 88774 2222 345566665321 125777655444443 3 345679998854
No 292
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=56.35 E-value=54 Score=33.65 Aligned_cols=71 Identities=18% Similarity=0.306 Sum_probs=48.3
Q ss_pred CccEEEEeCCCCC-------CCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE-----CCCCHH
Q 001044 1088 RFDLILMDCQMPK-------MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT-----KPIDSE 1155 (1177)
Q Consensus 1088 ~~DLIlmDi~MP~-------mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~-----KP~~~~ 1155 (1177)
.+|.|+++--.|. ..|++.++++++.. ++||++.-+-. .++..+++++|+|.+.. +.-++.
T Consensus 128 g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~------~~pvia~GGI~-~~nv~~~~~~Ga~gv~vgs~i~~~~d~~ 200 (215)
T 1xi3_A 128 GADYLGAGSVFPTKTKEDARVIGLEGLRKIVESV------KIPVVAIGGIN-KDNAREVLKTGVDGIAVISAVMGAEDVR 200 (215)
T ss_dssp TCSEEEEECSSCC----CCCCCHHHHHHHHHHHC------SSCEEEESSCC-TTTHHHHHTTTCSEEEESHHHHTSSSHH
T ss_pred CCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHhC------CCCEEEECCcC-HHHHHHHHHcCCCEEEEhHHHhCCCCHH
Confidence 5899998754453 35788888888642 48998876666 77888899999999853 322554
Q ss_pred HHHHHHHHHh
Q 001044 1156 RMVSTILRLT 1165 (1177)
Q Consensus 1156 ~L~~~I~~l~ 1165 (1177)
+....+.+.+
T Consensus 201 ~~~~~~~~~~ 210 (215)
T 1xi3_A 201 KATEELRKIV 210 (215)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 293
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=55.87 E-value=1e+02 Score=33.46 Aligned_cols=116 Identities=7% Similarity=0.044 Sum_probs=74.1
Q ss_pred CcEEEEE----ecChHHHHHHHHH--------Hhhc-CCEEEEE---cCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCC
Q 001044 1021 GLRILLA----EDTPLIQIVACKI--------LEKV-GATVSVV---PDGLQAVEALNRMLAAESSRRRSLLQGSPSETP 1084 (1177)
Q Consensus 1021 g~~ILIV----dD~~~~~~~l~~~--------L~~~-G~~v~~a---~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~ 1084 (1177)
..+|+++ |-+.+-..++..+ |+.. ||+|.-. -..++.++.+.+
T Consensus 120 ~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~vp~e~iv~aa~e--------------------- 178 (262)
T 1xrs_B 120 KIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAVE--------------------- 178 (262)
T ss_dssp CEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHHHH---------------------
T ss_pred CCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCCCCHHHHHHHHHH---------------------
Confidence 3577776 5666666667767 9999 9999763 345566666653
Q ss_pred CCCCccEEEEeCCCCC----CCH-HHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHH
Q 001044 1085 DTPRFDLILMDCQMPK----MDG-YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVS 1159 (1177)
Q Consensus 1085 ~~~~~DLIlmDi~MP~----mdG-~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~ 1159 (1177)
..+|+|.+-+.|.. +.. -++.+.+|+... ..++||++ -+.... ...+.+.|+|.|..--....++..
T Consensus 179 --~~~d~VglS~l~t~~~~~~~~~~~~i~~L~~~g~---~~~i~viv-GG~~~~--~~~a~~iGad~~~~da~~~~~~a~ 250 (262)
T 1xrs_B 179 --LEADVLLVSQTVTQKNVHIQNMTHLIELLEAEGL---RDRFVLLC-GGPRIN--NEIAKELGYDAGFGPGRFADDVAT 250 (262)
T ss_dssp --TTCSEEEEECCCCTTSHHHHHHHHHHHHHHHTTC---GGGSEEEE-ECTTCC--HHHHHTTTCSEEECTTCCHHHHHH
T ss_pred --cCCCEEEEEeecCCccchHHHHHHHHHHHHhcCC---CCCCEEEE-ECCcCC--HHHHHHcCCeEEECCchHHHHHHH
Confidence 47999999999986 222 234455554311 12366654 443332 344778999999877677777777
Q ss_pred HHHHHh
Q 001044 1160 TILRLT 1165 (1177)
Q Consensus 1160 ~I~~l~ 1165 (1177)
.+...+
T Consensus 251 ~l~~~~ 256 (262)
T 1xrs_B 251 FAVKTL 256 (262)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665544
No 294
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=55.72 E-value=43 Score=38.04 Aligned_cols=116 Identities=13% Similarity=0.127 Sum_probs=71.1
Q ss_pred cEEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCce
Q 001044 773 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 852 (1177)
Q Consensus 773 ~~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 852 (1177)
..+++.++....+..+...++..|..+..+.+...+...+.. .+.+
T Consensus 6 ~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~----------------------------------~~~d 51 (394)
T 3eq2_A 6 ATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFES----------------------------------EQPD 51 (394)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHHH----------------------------------SCCS
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhh----------------------------------CCCC
Confidence 357788888888999999999888876665555444333221 2357
Q ss_pred EEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccC-ChhHHHHHHHHHH
Q 001044 853 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPL-YKGKMIQLLETAV 926 (1177)
Q Consensus 853 ~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~-~~~~l~~~l~~~~ 926 (1177)
++++|+.++++++.-+-+.++.. ..... +++...........+..+.|..-++.||+ ....+...+....
T Consensus 52 lvllD~~mp~~~G~~~~~~lr~~---~~~~p-ii~lt~~~~~~~~~~a~~~ga~~yl~KP~~~~~~l~~~i~~~~ 122 (394)
T 3eq2_A 52 LVICDLRMPQIDGLELIRRIRQT---ASETP-IIVLSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRAL 122 (394)
T ss_dssp EEEECCCSSSSCTHHHHHHHHHT---TCCCC-EEEC---CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHHHH
T ss_pred EEEEcCCCCCCCHHHHHHHHHhh---CCCCc-EEEEEcCCCHHHHHHHHhcChhhEEECCCChHHHHHHHHHHHH
Confidence 89999999999885444444321 12222 23333222233344555678888999999 4566665555443
No 295
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=55.53 E-value=52 Score=32.89 Aligned_cols=113 Identities=15% Similarity=0.065 Sum_probs=69.0
Q ss_pred CcEEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCc
Q 001044 772 NTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPV 851 (1177)
Q Consensus 772 ~~~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 851 (1177)
+..+++.+.....+..+...+...|.....+..... ....+.
T Consensus 12 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~--------------------------------------al~~~~ 53 (196)
T 1qo0_D 12 ELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPE--------------------------------------AFDVPV 53 (196)
T ss_dssp GCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCS--------------------------------------SCSSCC
T ss_pred CCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCchh--------------------------------------hCCCCC
Confidence 346778888888888888888877765543321110 001245
Q ss_pred eEEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001044 852 YVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 927 (1177)
Q Consensus 852 ~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 927 (1177)
+++++|+.++++++. +.+.+.. ......+ ++..............+.|...++.||+....+...+..+..
T Consensus 54 dlvl~D~~mp~~~g~-l~~~~~~---~~~~~~i-i~lt~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~~~ 124 (196)
T 1qo0_D 54 DVVFTSIFQNRHHDE-IAALLAA---GTPRTTL-VALVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARR 124 (196)
T ss_dssp SEEEEECCSSTHHHH-HHHHHHH---SCTTCEE-EEEECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHH
T ss_pred CEEEEeCCCCccchH-HHHHHhc---cCCCCCE-EEEEcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHHHH
Confidence 788999999887654 3333222 1122223 333333333344555667888999999999999988877654
No 296
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=54.11 E-value=87 Score=39.09 Aligned_cols=117 Identities=12% Similarity=0.065 Sum_probs=79.2
Q ss_pred CcEEEEE----ecChHHHHHHHHHHhhcCCEEEEE---cCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001044 1021 GLRILLA----EDTPLIQIVACKILEKVGATVSVV---PDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1093 (1177)
Q Consensus 1021 g~~ILIV----dD~~~~~~~l~~~L~~~G~~v~~a---~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIl 1093 (1177)
..+|+++ |.+..-..++..+|+..||+|+-- ...++.++.+.+ ..+|+|.
T Consensus 604 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e-----------------------~~adiVg 660 (762)
T 2xij_A 604 RPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQAVD-----------------------ADVHAVG 660 (762)
T ss_dssp CCEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHH-----------------------TTCSEEE
T ss_pred CCEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCCCCHHHHHHHHHH-----------------------cCCCEEE
Confidence 3577775 456666778888999999999864 245677777654 3799999
Q ss_pred EeCCCCCC-C-HHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHh
Q 001044 1094 MDCQMPKM-D-GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLT 1165 (1177)
Q Consensus 1094 mDi~MP~m-d-G~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~ 1165 (1177)
+-..|..- . .-++.+.+|+. +..+++|++ -+-.-..+...+.++|+|+|...--+..+....+...+
T Consensus 661 lSsl~~~~~~~~~~vi~~Lr~~----G~~dv~Viv-GG~~P~~d~~~l~~~GaD~~f~pgtd~~e~~~~i~~~l 729 (762)
T 2xij_A 661 VSTLAAGHKTLVPELIKELNSL----GRPDILVMC-GGVIPPQDYEFLFEVGVSNVFGPGTRIPKAAVQVLDDI 729 (762)
T ss_dssp EEECSSCHHHHHHHHHHHHHHT----TCTTSEEEE-EESCCGGGHHHHHHHTCCEEECTTCCHHHHHHHHHHHH
T ss_pred EeeecHHHHHHHHHHHHHHHhc----CCCCCEEEE-eCCCCcccHHHHHhCCCCEEeCCCCCHHHHHHHHHHHH
Confidence 98776432 2 24455666653 223555544 33233345667889999999986668888877777766
No 297
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=53.70 E-value=74 Score=29.01 Aligned_cols=117 Identities=8% Similarity=0.027 Sum_probs=66.7
Q ss_pred cEEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCce
Q 001044 773 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 852 (1177)
Q Consensus 773 ~~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 852 (1177)
..+++.+.....+..+..++...+.....+...+.+.. .-. .. ..
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~---------------------------------~~~-~~-~d 48 (135)
T 3eqz_A 4 NRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLT---------------------------------LSL-NK-QD 48 (135)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTT---------------------------------SCC-CT-TE
T ss_pred ceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHH---------------------------------hhc-cC-CC
Confidence 34677777777788888888776544444443322110 000 12 57
Q ss_pred EEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCc-----hhhhhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001044 853 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTS-----PIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 927 (1177)
Q Consensus 853 ~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 927 (1177)
++++|..+.+.++..+-+.++ .......+.++.. .... .......+.|...++.||+....+...+..+..
T Consensus 49 lvi~D~~l~~~~g~~~~~~l~---~~~~~~~ii~~s~-~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~ 124 (135)
T 3eqz_A 49 IIILDLMMPDMDGIEVIRHLA---EHKSPASLILISG-YDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSN 124 (135)
T ss_dssp EEEEECCTTTTHHHHHHHHHH---HTTCCCEEEEEES-SCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSC
T ss_pred EEEEeCCCCCCCHHHHHHHHH---hCCCCCCEEEEEe-ccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHh
Confidence 899999988876643333332 2222233333322 2211 122224455667789999999999999888754
Q ss_pred c
Q 001044 928 G 928 (1177)
Q Consensus 928 ~ 928 (1177)
+
T Consensus 125 ~ 125 (135)
T 3eqz_A 125 R 125 (135)
T ss_dssp C
T ss_pred h
Confidence 3
No 298
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=53.02 E-value=86 Score=31.82 Aligned_cols=114 Identities=12% Similarity=0.047 Sum_probs=69.2
Q ss_pred EEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCceE
Q 001044 774 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 853 (1177)
Q Consensus 774 ~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 853 (1177)
.+++.+.....+..+...+...| ....+.+...+.. .. .+.++
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~-----------------------------------~~-~~~dl 46 (220)
T 1p2f_A 4 KIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLN-----------------------------------DE-EAFHV 46 (220)
T ss_dssp EEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHH-----------------------------------CC-SCCSE
T ss_pred eEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHH-----------------------------------hc-CCCCE
Confidence 35667777777778888887776 4433333222111 01 34578
Q ss_pred EEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001044 854 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 928 (1177)
Q Consensus 854 v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 928 (1177)
+++|..+++.++..+-+.++ .......+.++ .............+.|...++.||+....+...+..+..+
T Consensus 47 vllD~~lp~~~g~~~~~~lr---~~~~~~~ii~l-t~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 117 (220)
T 1p2f_A 47 VVLDVMLPDYSGYEICRMIK---ETRPETWVILL-TLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLER 117 (220)
T ss_dssp EEEESBCSSSBHHHHHHHHH---HHCTTSEEEEE-ESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHH---hcCCCCcEEEE-EcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 89999999887643333332 22222333333 3233333444556678889999999999999988887654
No 299
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=52.31 E-value=28 Score=37.01 Aligned_cols=62 Identities=19% Similarity=0.194 Sum_probs=43.0
Q ss_pred ccEEEEeC--CCCCCCH--------------------HHHHHHHHhcccccCCCCcceEEEecCCC------HHHHHHHH
Q 001044 1089 FDLILMDC--QMPKMDG--------------------YEATIEIRKSESEHGARNIPIVALTAHAM------NADEKKCL 1140 (1177)
Q Consensus 1089 ~DLIlmDi--~MP~mdG--------------------~e~~r~IR~~~~~~~~~~ipIIalTa~~~------~~~~~~~l 1140 (1177)
.|.|-+|+ .=|.||| ++++++||+. .++||++++.... .+....|+
T Consensus 32 ad~iel~~p~sdp~~DG~~~~~~~~~al~~g~~~~~~~~~i~~i~~~------~~~pv~~~~~~~~~~~~~~~~~~~~~~ 105 (248)
T 1geq_A 32 AGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRH------SSTPIVLMTYYNPIYRAGVRNFLAEAK 105 (248)
T ss_dssp BSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTT------CCCCEEEEECHHHHHHHCHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhh------CCCCEEEEeccchhhhcCHHHHHHHHH
Confidence 77777773 2357766 6777888864 2478988884222 56778899
Q ss_pred HcCCCEEEECCCCHHH
Q 001044 1141 GVGMNAYLTKPIDSER 1156 (1177)
Q Consensus 1141 ~aG~d~yL~KP~~~~~ 1156 (1177)
++|+|..+.=....++
T Consensus 106 ~~Gad~v~~~~~~~~~ 121 (248)
T 1geq_A 106 ASGVDGILVVDLPVFH 121 (248)
T ss_dssp HHTCCEEEETTCCGGG
T ss_pred HCCCCEEEECCCChhh
Confidence 9999999986544433
No 300
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=51.86 E-value=1.4e+02 Score=27.27 Aligned_cols=114 Identities=14% Similarity=0.073 Sum_probs=68.7
Q ss_pred CCcEEEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCC
Q 001044 771 PNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 850 (1177)
Q Consensus 771 ~~~~v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 850 (1177)
....+++.+.....+..+...+...|.....+.+...+...+... +
T Consensus 17 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~----------------------------------~ 62 (137)
T 2pln_A 17 GSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIR----------------------------------N 62 (137)
T ss_dssp TCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHS----------------------------------C
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHcC----------------------------------C
Confidence 456788888888888889999988887766666555444433221 1
Q ss_pred ceEEEEEecccccChhHHHHHhhhhhhhhc-cceeeeeeccCCCchhhhhhhhcCCcEEEeccC-ChhHHHHHHHHHHh
Q 001044 851 VYVVVIDIALLDLSSDLWREQLNSLDIFHR-KAMFAWVVNHQTTSPIKTELSREGQNIVVTKPL-YKGKMIQLLETAVR 927 (1177)
Q Consensus 851 ~~~v~id~~l~d~~~~~~~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~-~~~~l~~~l~~~~~ 927 (1177)
..+++ +.+.++..+-+. +... . ...+.++ .............+.|...++.||+ ....+...+..+..
T Consensus 63 ~dlvi----~~~~~g~~~~~~---l~~~-~~~~~ii~l-s~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~ 132 (137)
T 2pln_A 63 YDLVM----VSDKNALSFVSR---IKEK-HSSIVVLVS-SDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLR 132 (137)
T ss_dssp CSEEE----ECSTTHHHHHHH---HHHH-STTSEEEEE-ESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC
T ss_pred CCEEE----EcCccHHHHHHH---HHhc-CCCccEEEE-eCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHHh
Confidence 22333 455554322222 2222 2 2233333 3333334445566788889999999 99999888877654
No 301
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=48.94 E-value=98 Score=33.73 Aligned_cols=92 Identities=13% Similarity=0.101 Sum_probs=62.3
Q ss_pred HHHHhhcCCEEE-EEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCC---CCCCCHHHHHHHHHhc
Q 001044 1038 CKILEKVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ---MPKMDGYEATIEIRKS 1113 (1177)
Q Consensus 1038 ~~~L~~~G~~v~-~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~---MP~mdG~e~~r~IR~~ 1113 (1177)
......+|..+. .+.|.+|+..++. ..+|+|=..-. --..| ++.+.++.+.
T Consensus 162 ~~~a~~lGl~~lvevh~~eEl~~A~~------------------------~ga~iIGinnr~l~t~~~d-l~~~~~L~~~ 216 (272)
T 3tsm_A 162 EDTAFALGMDALIEVHDEAEMERALK------------------------LSSRLLGVNNRNLRSFEVN-LAVSERLAKM 216 (272)
T ss_dssp HHHHHHTTCEEEEEECSHHHHHHHTT------------------------SCCSEEEEECBCTTTCCBC-THHHHHHHHH
T ss_pred HHHHHHcCCeEEEEeCCHHHHHHHHh------------------------cCCCEEEECCCCCccCCCC-hHHHHHHHHh
Confidence 334456788765 5788888765553 25777755421 11112 5677777754
Q ss_pred ccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE-----CCCCHHHHH
Q 001044 1114 ESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT-----KPIDSERMV 1158 (1177)
Q Consensus 1114 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~-----KP~~~~~L~ 1158 (1177)
-+ ..+|+|+-++-...++..++.++|+|++|. ||-++.+-.
T Consensus 217 ip----~~~~vIaesGI~t~edv~~l~~~Ga~gvLVG~almr~~d~~~~~ 262 (272)
T 3tsm_A 217 AP----SDRLLVGESGIFTHEDCLRLEKSGIGTFLIGESLMRQHDVAAAT 262 (272)
T ss_dssp SC----TTSEEEEESSCCSHHHHHHHHTTTCCEEEECHHHHTSSCHHHHH
T ss_pred CC----CCCcEEEECCCCCHHHHHHHHHcCCCEEEEcHHHcCCcCHHHHH
Confidence 32 258999999999999999999999999986 566655433
No 302
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=48.91 E-value=1e+02 Score=32.45 Aligned_cols=96 Identities=10% Similarity=0.094 Sum_probs=57.5
Q ss_pred EEEEEecCh-HHHHHHHHHHhhcCCEEEEEc---CHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCcc-EEE-EeC
Q 001044 1023 RILLAEDTP-LIQIVACKILEKVGATVSVVP---DGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFD-LIL-MDC 1096 (1177)
Q Consensus 1023 ~ILIVdD~~-~~~~~l~~~L~~~G~~v~~a~---nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-LIl-mDi 1096 (1177)
..+++.|-+ .....+...+++.|..+...- +..++++.+... .| +|. +..
T Consensus 110 d~v~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~t~~e~~~~~~~~------------------------~d~~i~~~~~ 165 (248)
T 1geq_A 110 DGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDM------------------------TTGFVYLVSL 165 (248)
T ss_dssp CEEEETTCCGGGHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHHH------------------------CSSEEEEECC
T ss_pred CEEEECCCChhhHHHHHHHHHHhCCCeEEEECCCCHHHHHHHHHhc------------------------CCCeEEEEEC
Confidence 344444422 233445566677787766544 345666655431 23 443 444
Q ss_pred CCCCCC---------HHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEEC
Q 001044 1097 QMPKMD---------GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1150 (1177)
Q Consensus 1097 ~MP~md---------G~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~K 1150 (1177)
|++. +++.++++|+. .++||++--+-...++..+++++|+|.++.=
T Consensus 166 --~G~~g~~~~~~~~~~~~i~~l~~~------~~~pi~~~GGI~~~e~i~~~~~~Gad~vivG 220 (248)
T 1geq_A 166 --YGTTGAREEIPKTAYDLLRRAKRI------CRNKVAVGFGVSKREHVVSLLKEGANGVVVG 220 (248)
T ss_dssp --C-------CCCHHHHHHHHHHHHH------CSSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred --CccCCCCCCCChhHHHHHHHHHhh------cCCCEEEEeecCCHHHHHHHHHcCCCEEEEc
Confidence 5443 34566777753 2489888777777789999999999999863
No 303
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=48.61 E-value=57 Score=33.88 Aligned_cols=71 Identities=13% Similarity=0.176 Sum_probs=46.8
Q ss_pred CccEEEEeCCCCC-------CCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE-----CCCCHH
Q 001044 1088 RFDLILMDCQMPK-------MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT-----KPIDSE 1155 (1177)
Q Consensus 1088 ~~DLIlmDi~MP~-------mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~-----KP~~~~ 1155 (1177)
..|.|+++-..|. .-|++.++++++. .++||++.-+- +.++..+++++|+|.+.. +.-++.
T Consensus 130 gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~------~~~pvia~GGI-~~~nv~~~~~~Ga~gv~vgs~i~~~~d~~ 202 (221)
T 1yad_A 130 DADYVLFGHVFETDCKKGLEGRGVSLLSDIKQR------ISIPVIAIGGM-TPDRLRDVKQAGADGIAVMSGIFSSAEPL 202 (221)
T ss_dssp TCSEEEEECCC----------CHHHHHHHHHHH------CCSCEEEESSC-CGGGHHHHHHTTCSEEEESHHHHTSSSHH
T ss_pred CCCEEEECCccccCCCCCCCCCCHHHHHHHHHh------CCCCEEEECCC-CHHHHHHHHHcCCCEEEEhHHhhCCCCHH
Confidence 5899988754332 2367888887753 24899988777 788999999999998765 333444
Q ss_pred HHHHHHHHHh
Q 001044 1156 RMVSTILRLT 1165 (1177)
Q Consensus 1156 ~L~~~I~~l~ 1165 (1177)
+....+.+.+
T Consensus 203 ~~~~~~~~~~ 212 (221)
T 1yad_A 203 EAARRYSRKL 212 (221)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 304
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=48.51 E-value=58 Score=33.48 Aligned_cols=119 Identities=10% Similarity=-0.043 Sum_probs=70.3
Q ss_pred cEEEEeecChhHHHHHHHHHHh-ccceeee-cc-chhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccC
Q 001044 773 TVVVLATVGSMERMIISQWLRK-KKVSTLE-TS-EWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALID 849 (1177)
Q Consensus 773 ~~v~~~~~~~~~r~~~~~~l~~-~g~~~~~-~~-~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (1177)
..+++.++....+..+..++.. .|..... +. ..+.+. .. ....
T Consensus 8 ~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~~~~~~~----~~------------------------------~~~~ 53 (225)
T 3klo_A 8 LNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEE----NK------------------------------PESR 53 (225)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHT----TC------------------------------SGGG
T ss_pred eEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCCcHHHHH----HH------------------------------hhcc
Confidence 3577788888888888888874 4554422 11 111100 00 0112
Q ss_pred CceEEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001044 850 PVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 928 (1177)
Q Consensus 850 p~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 928 (1177)
+++++++|+.++++++..+-+.++.. ......+ ++..............+.|.+.++.||+....+...+..+..+
T Consensus 54 ~~dlvllD~~mp~~~G~~~~~~lr~~--~~~~~~i-i~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 129 (225)
T 3klo_A 54 SIQMLVIDYSRISDDVLTDYSSFKHI--SCPDAKE-VIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQD 129 (225)
T ss_dssp GCCEEEEEGGGCCHHHHHHHHHHHHH--HCTTCEE-EEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHh--hCCCCcE-EEEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHCC
Confidence 45789999999998764433333220 1122222 3333333333445566678888999999999999998887764
No 305
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=48.12 E-value=28 Score=37.74 Aligned_cols=42 Identities=12% Similarity=0.142 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEEC
Q 001044 1103 GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1150 (1177)
Q Consensus 1103 G~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~K 1150 (1177)
+.+.++++|+. .++|||+-.+-.+.++..+++++|+|.++.=
T Consensus 166 ~~~~l~~i~~~------~~iPviv~gGI~t~eda~~~~~~GAdgViVG 207 (264)
T 1xm3_A 166 NPLNLSFIIEQ------AKVPVIVDAGIGSPKDAAYAMELGADGVLLN 207 (264)
T ss_dssp CHHHHHHHHHH------CSSCBEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred CHHHHHHHHhc------CCCCEEEEeCCCCHHHHHHHHHcCCCEEEEc
Confidence 47888888863 2589999999888999999999999998863
No 306
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=47.94 E-value=10 Score=41.20 Aligned_cols=78 Identities=17% Similarity=0.177 Sum_probs=49.3
Q ss_pred cEEEEEecC--hHHHHHHHHHHhhcCCEEEEEcCHHH--HHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCC
Q 001044 1022 LRILLAEDT--PLIQIVACKILEKVGATVSVVPDGLQ--AVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ 1097 (1177)
Q Consensus 1022 ~~ILIVdD~--~~~~~~l~~~L~~~G~~v~~a~nG~e--Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~ 1097 (1177)
.+||||+++ +.-...+...|+..|++|.......- -.+.+. .||+||++-.
T Consensus 5 ~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~-------------------------~yDvIIl~d~ 59 (259)
T 3rht_A 5 TRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLA-------------------------KQDLVILSDY 59 (259)
T ss_dssp -CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHH-------------------------TCSEEEEESC
T ss_pred ceEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHHh-------------------------cCCEEEEcCC
Confidence 489999998 66778888999999999988764421 113332 6999988732
Q ss_pred CC-CCCHHHHHHHHHhcccccCCCCcceEEEec
Q 001044 1098 MP-KMDGYEATIEIRKSESEHGARNIPIVALTA 1129 (1177)
Q Consensus 1098 MP-~mdG~e~~r~IR~~~~~~~~~~ipIIalTa 1129 (1177)
.. ..+- +.++.|++.-... --+|++.+
T Consensus 60 ~~~~l~~-~~~~~L~~yV~~G----GgLi~~gG 87 (259)
T 3rht_A 60 PAERMTA-QAIDQLVTMVKAG----CGLVMLGG 87 (259)
T ss_dssp CGGGBCH-HHHHHHHHHHHTT----CEEEEECS
T ss_pred ccccCCH-HHHHHHHHHHHhC----CeEEEecC
Confidence 22 2332 5556677654332 23555544
No 307
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=46.45 E-value=1e+02 Score=35.08 Aligned_cols=99 Identities=11% Similarity=0.177 Sum_probs=62.8
Q ss_pred HHHhhcCCEEE--EEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC-----CCCCHHHHHHHHH
Q 001044 1039 KILEKVGATVS--VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM-----PKMDGYEATIEIR 1111 (1177)
Q Consensus 1039 ~~L~~~G~~v~--~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~M-----P~mdG~e~~r~IR 1111 (1177)
..|++.|+.+. -+..|...+..+. .-++|.|=.|-.+ .......+++.|-
T Consensus 283 ~~l~~~G~~ialDDfG~g~ssl~~L~-----------------------~l~~d~iKiD~~~v~~~~~~~~~~~~v~~i~ 339 (400)
T 3sy8_A 283 VRLWIMGCGLAMDDFGAGYSSLDRLC-----------------------EFPFSQIKLDRTFVQKMKTQPRSCAVISSVV 339 (400)
T ss_dssp HHHHHHTCEEEEEEECSCSGGGGSSS-----------------------SCCCSEEEECTHHHHHHHHCTTHHHHHHHHH
T ss_pred HHHHHCCCEEEEECCCCchhhHHHHH-----------------------hCCCCEEEECHHHHhhhhcChhHHHHHHHHH
Confidence 34556676543 3556655555443 3479999999532 1223444555555
Q ss_pred hcccccCCCCcceEEEecCCCHHHHHHHHHcCCCE----EEECCCCHHHHHHHHHHH
Q 001044 1112 KSESEHGARNIPIVALTAHAMNADEKKCLGVGMNA----YLTKPIDSERMVSTILRL 1164 (1177)
Q Consensus 1112 ~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~----yL~KP~~~~~L~~~I~~l 1164 (1177)
...... .+.+| ..+-.+.++...+.+.|+|. |+.||...+++...+..-
T Consensus 340 ~~a~~l---~~~vv-aEGVEt~~~~~~l~~~g~~~~QGy~~~~P~~~~~~~~~~~~~ 392 (400)
T 3sy8_A 340 ALAQAL---GISLV-VEGVESDEQRVRLIELGCSIAQGYLFARPMPEQHFLDYCSGS 392 (400)
T ss_dssp HHHHHH---TCEEE-ECCCCCHHHHHHHHHHTCCEECBTTTBCCBCHHHHHHHHHHC
T ss_pred HHHHHc---CCeEE-EecCCcHHHHHHHHHcCCCEEEcCeecCcCCHHHHHHHHHhc
Confidence 443322 24444 46777788888888999985 588999999998766543
No 308
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=46.20 E-value=65 Score=34.05 Aligned_cols=67 Identities=12% Similarity=0.159 Sum_probs=49.2
Q ss_pred cc-EEEEeCCCCCC-C--HHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE------CCCCHHHHH
Q 001044 1089 FD-LILMDCQMPKM-D--GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT------KPIDSERMV 1158 (1177)
Q Consensus 1089 ~D-LIlmDi~MP~m-d--G~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~------KP~~~~~L~ 1158 (1177)
++ +++.+..-.++ . .++.++++++. .++|||+..+-...++..+++++|+|+.+. .|++++++.
T Consensus 166 ~~~i~~~~~~~~g~~~g~~~~~i~~l~~~------~~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~~~~~~~~~~ 239 (252)
T 1ka9_F 166 AGEILLTSMDRDGTKEGYDLRLTRMVAEA------VGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGEIPIPKLK 239 (252)
T ss_dssp CCEEEEEETTTTTTCSCCCHHHHHHHHHH------CSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSCHHHHH
T ss_pred CCEEEEecccCCCCcCCCCHHHHHHHHHH------cCCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHH
Confidence 55 55565542221 2 38999999864 258999999988889999999999999885 567777776
Q ss_pred HHH
Q 001044 1159 STI 1161 (1177)
Q Consensus 1159 ~~I 1161 (1177)
..+
T Consensus 240 ~~l 242 (252)
T 1ka9_F 240 RYL 242 (252)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 309
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=44.50 E-value=61 Score=34.95 Aligned_cols=73 Identities=16% Similarity=0.266 Sum_probs=49.5
Q ss_pred CccEEEEeCCC--CCCCH--------------------HHHHHHHHhcccccCCCCcceEEEecCC------CHHHHHHH
Q 001044 1088 RFDLILMDCQM--PKMDG--------------------YEATIEIRKSESEHGARNIPIVALTAHA------MNADEKKC 1139 (1177)
Q Consensus 1088 ~~DLIlmDi~M--P~mdG--------------------~e~~r~IR~~~~~~~~~~ipIIalTa~~------~~~~~~~~ 1139 (1177)
..|+|-+++-. |.+|| ++++++||+.. +++||++++-.. .......|
T Consensus 44 G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~-----~~~Pi~~m~y~n~v~~~g~~~f~~~~ 118 (262)
T 2ekc_A 44 GTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEF-----PDIPFLLMTYYNPIFRIGLEKFCRLS 118 (262)
T ss_dssp TCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-----TTSCEEEECCHHHHHHHCHHHHHHHH
T ss_pred CCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhc-----CCCCEEEEecCcHHHHhhHHHHHHHH
Confidence 58999887633 33444 35577777541 258999985432 14566789
Q ss_pred HHcCCCEEEECCCCHHHHHHHHHHHh
Q 001044 1140 LGVGMNAYLTKPIDSERMVSTILRLT 1165 (1177)
Q Consensus 1140 l~aG~d~yL~KP~~~~~L~~~I~~l~ 1165 (1177)
.++|+|+++.=.+..+++...+..+-
T Consensus 119 ~~aG~dgvii~dl~~ee~~~~~~~~~ 144 (262)
T 2ekc_A 119 REKGIDGFIVPDLPPEEAEELKAVMK 144 (262)
T ss_dssp HHTTCCEEECTTCCHHHHHHHHHHHH
T ss_pred HHcCCCEEEECCCCHHHHHHHHHHHH
Confidence 99999999998888877666555443
No 310
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=44.44 E-value=1.1e+02 Score=34.86 Aligned_cols=90 Identities=21% Similarity=0.132 Sum_probs=58.6
Q ss_pred HHHHHHHHHhhcCCEEE--EEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCC------C-----C
Q 001044 1033 IQIVACKILEKVGATVS--VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ------M-----P 1099 (1177)
Q Consensus 1033 ~~~~l~~~L~~~G~~v~--~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~------M-----P 1099 (1177)
..+.++.+-+..+..|. .+.+.++|..+.+. ..|.|..-.. . .
T Consensus 133 ~~~~i~~i~~~~~~~Vivg~v~t~e~A~~l~~a------------------------GaD~I~VG~~~Gs~~~tr~~~g~ 188 (361)
T 3khj_A 133 IIRTLKEIKSKMNIDVIVGNVVTEEATKELIEN------------------------GADGIKVGIGPGSICTTRIVAGV 188 (361)
T ss_dssp HHHHHHHHHHHCCCEEEEEEECSHHHHHHHHHT------------------------TCSEEEECSSCCTTCCHHHHTCB
T ss_pred HHHHHHHHHHhcCCcEEEccCCCHHHHHHHHHc------------------------CcCEEEEecCCCcCCCcccccCC
Confidence 34455554455566665 47788888776642 5788876211 0 0
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1100 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1100 ~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
+...++++..+++.... ..+|||+--+-.+..+..+++.+|||..+.
T Consensus 189 g~p~~~~i~~v~~~~~~---~~iPVIA~GGI~~~~di~kala~GAd~V~v 235 (361)
T 3khj_A 189 GVPQITAIEKCSSVASK---FGIPIIADGGIRYSGDIGKALAVGASSVMI 235 (361)
T ss_dssp CCCHHHHHHHHHHHHHH---HTCCEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred CCCcHHHHHHHHHHHhh---cCCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 12346666666543222 248999988888899999999999998763
No 311
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=44.31 E-value=2.2e+02 Score=33.81 Aligned_cols=102 Identities=10% Similarity=0.105 Sum_probs=65.1
Q ss_pred CcEEEEEecC----hHHHHHHHHHHhhcC-CEEE--EEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001044 1021 GLRILLAEDT----PLIQIVACKILEKVG-ATVS--VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1093 (1177)
Q Consensus 1021 g~~ILIVdD~----~~~~~~l~~~L~~~G-~~v~--~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIl 1093 (1177)
|..+++++.. ......++.+-+..+ ..+. .+.+.++|..+.+. ..|.|.
T Consensus 268 Gvd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~~a------------------------Gad~i~ 323 (511)
T 3usb_A 268 SVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEA------------------------GANVVK 323 (511)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHH------------------------TCSEEE
T ss_pred ccceEEecccccchhhhhhHHHHHHHhCCCceEEeeeeccHHHHHHHHHh------------------------CCCEEE
Confidence 5567777743 233344444444443 3333 46788888777653 578887
Q ss_pred EeCCCC-----------CCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1094 MDCQMP-----------KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1094 mDi~MP-----------~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
..+.-- +...++++..+++.... ..+|||+--+-....|..+|+.+|||..+.
T Consensus 324 vg~g~gsi~~~~~~~g~g~p~~~~l~~v~~~~~~---~~iPVIa~GGI~~~~di~kala~GA~~V~v 387 (511)
T 3usb_A 324 VGIGPGSICTTRVVAGVGVPQLTAVYDCATEARK---HGIPVIADGGIKYSGDMVKALAAGAHVVML 387 (511)
T ss_dssp ECSSCSTTCCHHHHHCCCCCHHHHHHHHHHHHHT---TTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred ECCCCccccccccccCCCCCcHHHHHHHHHHHHh---CCCcEEEeCCCCCHHHHHHHHHhCchhhee
Confidence 633210 12235666666544322 249999999999999999999999999876
No 312
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=43.86 E-value=1.4e+02 Score=32.81 Aligned_cols=58 Identities=26% Similarity=0.462 Sum_probs=41.4
Q ss_pred HHHHHHHHhcccccCCCCcceE--EEecCCCHHHHHHHHHcCCCEEEE-----CCCCHHHHHHHHHHHhhc
Q 001044 1104 YEATIEIRKSESEHGARNIPIV--ALTAHAMNADEKKCLGVGMNAYLT-----KPIDSERMVSTILRLTKN 1167 (1177)
Q Consensus 1104 ~e~~r~IR~~~~~~~~~~ipII--alTa~~~~~~~~~~l~aG~d~yL~-----KP~~~~~L~~~I~~l~~~ 1167 (1177)
+++++++++. .++||| +-.+-...++..+++++|+|.++. |--++......+...++.
T Consensus 196 ~~ll~~i~~~------~~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGsai~~a~dp~~~~~~l~~ai~~ 260 (297)
T 4adt_A 196 IDLILLTRKL------KRLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFESENPQKMASSIVMAVSN 260 (297)
T ss_dssp HHHHHHHHHH------TSCSSEEEEESCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHh------cCCCeEEEecCCCCCHHHHHHHHHcCCCEEEEhHHHHcCCCHHHHHHHHHHHHHh
Confidence 5667777754 237776 566667899999999999999986 555666666666555543
No 313
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=42.91 E-value=42 Score=44.14 Aligned_cols=49 Identities=20% Similarity=0.324 Sum_probs=31.3
Q ss_pred EEEEeCCCCCChhh--------HhhhhcccccCCC----CCCCCCCccchhHHHHHHHHHH
Q 001044 685 FEVDDTGCGIDQSK--------WETVFESFEQGDP----STTRKHGGTGLGLSIVRTLVNK 733 (1177)
Q Consensus 685 i~V~DtG~GI~~e~--------l~~IFe~F~q~d~----s~~~~~~GtGLGLaIvk~IVe~ 733 (1177)
|+|.|+|.|||-+. .+-||....-+.. +.....|=.|.|.+.|.-|-+.
T Consensus 95 isV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAGgKFd~~~ykvSGGLHGVG~svVNALS~~ 155 (1177)
T 4gfh_A 95 IEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTE 155 (1177)
T ss_dssp EEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEESCCCCSSCCCCSCCSSCHHHHHHHTEEE
T ss_pred EEEEecCCcccccccCCCCCEeeeeeccccccccCcCCCCCeEeccCCChhhhHHhhcCCc
Confidence 89999999999653 3456655443322 1111224479999999887543
No 314
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=42.85 E-value=1.8e+02 Score=34.36 Aligned_cols=101 Identities=11% Similarity=0.127 Sum_probs=65.5
Q ss_pred CcEEEEEe----cChHHHHHHHHHHhhc-CCEEEE--EcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001044 1021 GLRILLAE----DTPLIQIVACKILEKV-GATVSV--VPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1093 (1177)
Q Consensus 1021 g~~ILIVd----D~~~~~~~l~~~L~~~-G~~v~~--a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIl 1093 (1177)
|..++++| ..+...+.++.+-+.. +..+.. +.+.++|..+.+. ..|.|.
T Consensus 241 G~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~~a------------------------GaD~I~ 296 (490)
T 4avf_A 241 GVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGNIATAEAAKALAEA------------------------GADAVK 296 (490)
T ss_dssp TCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHT------------------------TCSEEE
T ss_pred ccceEEecccCCcchhHHHHHHHHHHHCCCceEEEeeeCcHHHHHHHHHc------------------------CCCEEE
Confidence 44566665 3334445555555554 444443 6788888776652 588888
Q ss_pred EeCCCCC------------CCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1094 MDCQMPK------------MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1094 mDi~MP~------------mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
+-+ =|+ ...++++..+++.... ..+|||+--+-....+..+++.+|||..+.
T Consensus 297 vg~-g~Gs~~~t~~~~g~g~p~~~~l~~v~~~~~~---~~iPVIa~GGI~~~~di~kal~~GAd~V~v 360 (490)
T 4avf_A 297 VGI-GPGSICTTRIVAGVGVPQISAIANVAAALEG---TGVPLIADGGIRFSGDLAKAMVAGAYCVMM 360 (490)
T ss_dssp ECS-SCSTTCHHHHHTCBCCCHHHHHHHHHHHHTT---TTCCEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred ECC-CCCcCCCccccCCCCccHHHHHHHHHHHhcc---CCCcEEEeCCCCCHHHHHHHHHcCCCeeee
Confidence 621 111 2245666777654322 259999999999999999999999999875
No 315
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=42.78 E-value=95 Score=34.07 Aligned_cols=93 Identities=22% Similarity=0.148 Sum_probs=58.7
Q ss_pred EEEEEecChHHH----HHHHHHHhhcCC---EEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEe
Q 001044 1023 RILLAEDTPLIQ----IVACKILEKVGA---TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMD 1095 (1177)
Q Consensus 1023 ~ILIVdD~~~~~----~~l~~~L~~~G~---~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmD 1095 (1177)
-+||.||+.... ..+...-+..+. --..+.+-+|+.+++.. ..|+|.+|
T Consensus 168 ~~LIkdnHi~~aggi~~av~~ar~~~~~~~~IgVev~t~eea~eA~~a------------------------GaD~I~ld 223 (286)
T 1x1o_A 168 GILLKENHVRAAGGVGEAVRRAKARAPHYLKVEVEVRSLEELEEALEA------------------------GADLILLD 223 (286)
T ss_dssp CEEECHHHHHHHTSHHHHHHHHHHHSCTTSCEEEEESSHHHHHHHHHH------------------------TCSEEEEE
T ss_pred ceEEECCHHHHhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHc------------------------CCCEEEEC
Confidence 367777765432 223333333443 23467899999888753 58999999
Q ss_pred CCCCCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1096 CQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1096 i~MP~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
-.-| +.++++.+.-. .++|+++ ++.-..+......++|+|.+-.
T Consensus 224 ~~~~-----~~~k~av~~v~----~~ipi~A-sGGIt~eni~~~a~tGvD~IsV 267 (286)
T 1x1o_A 224 NFPL-----EALREAVRRVG----GRVPLEA-SGNMTLERAKAAAEAGVDYVSV 267 (286)
T ss_dssp SCCH-----HHHHHHHHHHT----TSSCEEE-ESSCCHHHHHHHHHHTCSEEEC
T ss_pred CCCH-----HHHHHHHHHhC----CCCeEEE-EcCCCHHHHHHHHHcCCCEEEE
Confidence 7433 33444443221 2478777 6667788899999999988753
No 316
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=42.34 E-value=45 Score=34.42 Aligned_cols=117 Identities=15% Similarity=0.060 Sum_probs=70.6
Q ss_pred EEEEeecChhHHHHHHHHHHhcc-ceee-eccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCc
Q 001044 774 VVVLATVGSMERMIISQWLRKKK-VSTL-ETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPV 851 (1177)
Q Consensus 774 ~v~~~~~~~~~r~~~~~~l~~~g-~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 851 (1177)
.+++.++....+..+..++...+ .... .+.+...+...+.. .+.
T Consensus 3 ~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~~----------------------------------~~~ 48 (225)
T 3c3w_A 3 KVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPA----------------------------------ARP 48 (225)
T ss_dssp EEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHHH----------------------------------HCC
T ss_pred EEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhh----------------------------------cCC
Confidence 35677777778888888888765 4422 34443333322211 134
Q ss_pred eEEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHhc
Q 001044 852 YVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 928 (1177)
Q Consensus 852 ~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 928 (1177)
+++++|..++++++..+-+.++. ..... .+++..............+.|...++.||+....+...+..+..+
T Consensus 49 dlvllD~~lp~~~g~~~~~~lr~---~~~~~-~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 121 (225)
T 3c3w_A 49 DVAVLDVRLPDGNGIELCRDLLS---RMPDL-RCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAG 121 (225)
T ss_dssp SEEEECSEETTEEHHHHHHHHHH---HCTTC-EEEEGGGSSSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHH---hCCCC-cEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcC
Confidence 68899999998876433333322 11222 233333333334445555678888899999999999988877654
No 317
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=41.65 E-value=91 Score=33.20 Aligned_cols=51 Identities=20% Similarity=0.193 Sum_probs=34.6
Q ss_pred HHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE------CCCCHHHHHHH
Q 001044 1104 YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT------KPIDSERMVST 1160 (1177)
Q Consensus 1104 ~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~------KP~~~~~L~~~ 1160 (1177)
+++++++++. .++|||+..+-...++..+++++|+|+++. .|++.+++.+.
T Consensus 189 ~~~i~~l~~~------~~ipvia~GGI~~~ed~~~~~~~Gadgv~vgsal~~~~~~~~~~~~~ 245 (266)
T 2w6r_A 189 TEMIRFVRPL------TTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDMRELKEY 245 (266)
T ss_dssp HHHHHHHGGG------CCSCEEEESCCCSHHHHHHHHHHTCSEEEESTTTC------------
T ss_pred HHHHHHHHHH------cCCCEEEeCCCCCHHHHHHHHHcCCHHHHccHHHHcCCCCHHHHHHH
Confidence 7888888864 258999999999999999999999998775 34455544443
No 318
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=41.45 E-value=95 Score=32.24 Aligned_cols=81 Identities=15% Similarity=0.171 Sum_probs=58.1
Q ss_pred CCcEEEEEe------cChHHHHHHHHHHhhcCCEEEEE----cCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCc
Q 001044 1020 EGLRILLAE------DTPLIQIVACKILEKVGATVSVV----PDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRF 1089 (1177)
Q Consensus 1020 ~g~~ILIVd------D~~~~~~~l~~~L~~~G~~v~~a----~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1089 (1177)
.+.+|++++ |...+.....+.|+++|+++... .+.++..+.+.. .
T Consensus 26 ~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~-------------------------a 80 (206)
T 3l4e_A 26 QGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRK-------------------------N 80 (206)
T ss_dssp TTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHH-------------------------S
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHh-------------------------C
Confidence 457999997 44557778899999999999888 488887777753 6
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHhccccc-----CCCCcceEEEec
Q 001044 1090 DLILMDCQMPKMDGYEATIEIRKSESEH-----GARNIPIVALTA 1129 (1177)
Q Consensus 1090 DLIlmDi~MP~mdG~e~~r~IR~~~~~~-----~~~~ipIIalTa 1129 (1177)
|.|++ |+-+-+.+.+.+|+..-.. -....|++..+|
T Consensus 81 d~I~l----~GG~~~~l~~~L~~~gl~~~l~~~~~~G~p~~G~sA 121 (206)
T 3l4e_A 81 DFIYV----TGGNTFFLLQELKRTGADKLILEEIAAGKLYIGESA 121 (206)
T ss_dssp SEEEE----CCSCHHHHHHHHHHHTHHHHHHHHHHTTCEEEEETH
T ss_pred CEEEE----CCCCHHHHHHHHHHCChHHHHHHHHHcCCeEEEECH
Confidence 88884 8877777777766532100 012479999886
No 319
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=41.41 E-value=1.7e+02 Score=32.33 Aligned_cols=81 Identities=17% Similarity=0.119 Sum_probs=57.6
Q ss_pred HHHhhcCCEEEE-EcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC----C---CCHHHHHHHH
Q 001044 1039 KILEKVGATVSV-VPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP----K---MDGYEATIEI 1110 (1177)
Q Consensus 1039 ~~L~~~G~~v~~-a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP----~---mdG~e~~r~I 1110 (1177)
..+++.|..+.. +.+.++|..+.. ...|.|+++-.-+ + ...+++++++
T Consensus 112 ~~l~~~gi~vi~~v~t~~~a~~~~~------------------------~GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v 167 (328)
T 2gjl_A 112 AEFRRHGVKVIHKCTAVRHALKAER------------------------LGVDAVSIDGFECAGHPGEDDIPGLVLLPAA 167 (328)
T ss_dssp HHHHHTTCEEEEEESSHHHHHHHHH------------------------TTCSEEEEECTTCSBCCCSSCCCHHHHHHHH
T ss_pred HHHHHcCCCEEeeCCCHHHHHHHHH------------------------cCCCEEEEECCCCCcCCCCccccHHHHHHHH
Confidence 445556766554 678887776554 2578888753211 1 2567888888
Q ss_pred HhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1111 RKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1111 R~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
++. .++|||+--+-.+.++..+++.+|+|....
T Consensus 168 ~~~------~~iPviaaGGI~~~~~v~~al~~GAdgV~v 200 (328)
T 2gjl_A 168 ANR------LRVPIIASGGFADGRGLVAALALGADAINM 200 (328)
T ss_dssp HTT------CCSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred HHh------cCCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 853 258999988888889999999999999874
No 320
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=38.57 E-value=12 Score=35.71 Aligned_cols=31 Identities=16% Similarity=0.320 Sum_probs=24.9
Q ss_pred CccceeeeccccCCCCCCCcEEEEEEeehhhhHH
Q 001044 286 NSPLLSAALPVWDPTTSNKSIVAVVGVTTALSSV 319 (1177)
Q Consensus 286 ~~~~~~~~~pv~~~~~~~~~~~~v~gv~~~~~~i 319 (1177)
..+.+.++.||++. +|+++||+.|...+..+
T Consensus 98 ~g~~~~~~~PV~~~---~g~viGvv~vg~~l~~v 128 (131)
T 1p0z_A 98 LGSSLRGKSPIQDA---TGKVIGIVSVGYTIEQL 128 (131)
T ss_dssp TEEEEEEEEEEECT---TCCEEEEEEEEEEGGGC
T ss_pred ceeeEEEEEeEECC---CCCEEEEEEEEEEhHHh
Confidence 45788888999985 78999999988776543
No 321
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=37.74 E-value=3.3e+02 Score=30.78 Aligned_cols=97 Identities=12% Similarity=0.050 Sum_probs=60.1
Q ss_pred CcEEEEEecC----hHHHHHHHHHHhhc-CCEEEE--EcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001044 1021 GLRILLAEDT----PLIQIVACKILEKV-GATVSV--VPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1093 (1177)
Q Consensus 1021 g~~ILIVdD~----~~~~~~l~~~L~~~-G~~v~~--a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIl 1093 (1177)
|..++.+|=. ....+.+..+=+.. +..|.. +.+.++|..+.+. ..|.|.
T Consensus 112 GvdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~a------------------------GaD~I~ 167 (361)
T 3r2g_A 112 GADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLASC------------------------GADIIK 167 (361)
T ss_dssp TCCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHT------------------------TCSEEE
T ss_pred CCCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHHc------------------------CCCEEE
Confidence 4567777622 22223333332322 556554 7888888887753 589888
Q ss_pred EeCCCCCC------------CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1094 MDCQMPKM------------DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1094 mDi~MP~m------------dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
..+. |+. ..++++.++++. .. |||+--+-....+..+++.+|||..+.
T Consensus 168 Vg~g-~G~~~~tr~~~g~g~p~l~aI~~~~~~------~~-PVIAdGGI~~~~di~kALa~GAd~V~i 227 (361)
T 3r2g_A 168 AGIG-GGSVCSTRIKTGFGVPMLTCIQDCSRA------DR-SIVADGGIKTSGDIVKALAFGADFVMI 227 (361)
T ss_dssp ECCS-SSSCHHHHHHHCCCCCHHHHHHHHTTS------SS-EEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred EcCC-CCcCccccccCCccHHHHHHHHHHHHh------CC-CEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 7533 322 123344333321 12 999988888999999999999998764
No 322
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=36.59 E-value=36 Score=37.12 Aligned_cols=55 Identities=16% Similarity=0.283 Sum_probs=40.5
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEec------CCCHHHHHHHHHcCCCEEEECCCCHHHHHHHH
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIVALTA------HAMNADEKKCLGVGMNAYLTKPIDSERMVSTI 1161 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipIIalTa------~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I 1161 (1177)
+.+++.+++|+.. .++|||++|= ...+....+|.++|+|+.|.=-+.+++....+
T Consensus 83 ~~~~~v~~~r~~~-----~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~~~ 143 (271)
T 3nav_A 83 ICFELIAQIRARN-----PETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFV 143 (271)
T ss_dssp HHHHHHHHHHHHC-----TTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHHH
T ss_pred HHHHHHHHHHhcC-----CCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHHHH
Confidence 5688999999641 3589999973 23355678999999999999767776644433
No 323
>2kx7_A Sensor-like histidine kinase YOJN; alpha-beta-loop (ABL) domain, phosphotransfer, RCS regulatio two-component system, protein binding; NMR {Escherichia coli}
Probab=36.25 E-value=34 Score=32.15 Aligned_cols=95 Identities=16% Similarity=0.191 Sum_probs=66.6
Q ss_pred ccCCcEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCC
Q 001044 1018 ILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ 1097 (1177)
Q Consensus 1018 ~~~g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~ 1097 (1177)
.+.|..+|+-=-++..|.+++++|+..|+.+..+... .....||+++.|--
T Consensus 4 LLdgVt~lLdIts~Eir~IV~~~L~~~GA~~i~~der-----------------------------~~~~eyDi~lTDnp 54 (117)
T 2kx7_A 4 LLDDVCVMVDVTSAEIRNIVTRQLENWGATCITPDER-----------------------------LISQDYDIFLTDNP 54 (117)
T ss_dssp SSSSEEEEEECSSHHHHHHHHHHHHHHTEEEECCCSS-----------------------------SSCCCCSEEEEESG
T ss_pred cccCcEEEEEcCcHHHHHHHHHHHHhcCCeEEecccc-----------------------------CCCCcccEEEecCc
Confidence 4678899999999999999999999999988876421 12457999999952
Q ss_pred CCCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCH-HHHHHHHHHHhhc
Q 001044 1098 MPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDS-ERMVSTILRLTKN 1167 (1177)
Q Consensus 1098 MP~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~-~~L~~~I~~l~~~ 1167 (1177)
. ...-+++.|++.... ++.=...|+.--|+. +.|..+|..++++
T Consensus 55 --~------------------~~~~~tLLL~~d~~G------~~~l~p~~irvNyN~s~alidAIllLIEq 99 (117)
T 2kx7_A 55 --S------------------NLTASGLLLSDDESG------VREIGPGQLCVNFNMSNAMQEAVLQLIEV 99 (117)
T ss_dssp --G------------------GCSSSEEEECTTCSS------EEEEETTEEEECSSCHHHHHHHHHHHHHH
T ss_pred --c------------------ccCcCeEEEecCccc------ccccCCCeEEEeccchHHHHHHHHHHHHH
Confidence 1 123568888875432 222235566666664 6677888777653
No 324
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=36.22 E-value=1.3e+02 Score=30.92 Aligned_cols=41 Identities=10% Similarity=0.179 Sum_probs=34.3
Q ss_pred HHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1103 GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1103 G~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
+++.++++++. .++|||+..+-.+.++..+++++|+|.++.
T Consensus 163 ~~~~~~~~~~~------~~ipvia~GGI~~~~~~~~~~~~Gad~v~v 203 (223)
T 1y0e_A 163 DFQFLKDVLQS------VDAKVIAEGNVITPDMYKRVMDLGVHCSVV 203 (223)
T ss_dssp HHHHHHHHHHH------CCSEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred cHHHHHHHHhh------CCCCEEEecCCCCHHHHHHHHHcCCCEEEE
Confidence 46778888753 248999998888999999999999999876
No 325
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=36.19 E-value=51 Score=34.00 Aligned_cols=79 Identities=14% Similarity=0.136 Sum_probs=54.3
Q ss_pred HHHhhcCCEEE-EEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC-CCCHHHHHHHHHhcccc
Q 001044 1039 KILEKVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP-KMDGYEATIEIRKSESE 1116 (1177)
Q Consensus 1039 ~~L~~~G~~v~-~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP-~mdG~e~~r~IR~~~~~ 1116 (1177)
...++.|..+. .+.+..|+..... ...|+|++ .| ...|.+.++++++..+
T Consensus 95 ~~~~~~g~~~~~g~~t~~e~~~a~~------------------------~G~d~v~v---~~t~~~g~~~~~~l~~~~~- 146 (212)
T 2v82_A 95 RRAVGYGMTVCPGCATATEAFTALE------------------------AGAQALKI---FPSSAFGPQYIKALKAVLP- 146 (212)
T ss_dssp HHHHHTTCEEECEECSHHHHHHHHH------------------------TTCSEEEE---TTHHHHCHHHHHHHHTTSC-
T ss_pred HHHHHcCCCEEeecCCHHHHHHHHH------------------------CCCCEEEE---ecCCCCCHHHHHHHHHhcc-
Confidence 44555676532 3788888876653 25888885 22 1236788888876421
Q ss_pred cCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1117 HGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1117 ~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
.++||++..+-. .++..+++++|++.+..
T Consensus 147 ---~~ipvia~GGI~-~~~i~~~~~~Ga~gv~v 175 (212)
T 2v82_A 147 ---SDIAVFAVGGVT-PENLAQWIDAGCAGAGL 175 (212)
T ss_dssp ---TTCEEEEESSCC-TTTHHHHHHHTCSEEEE
T ss_pred ---CCCeEEEeCCCC-HHHHHHHHHcCCCEEEE
Confidence 158999988876 77888999999999984
No 326
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=35.94 E-value=1.2e+02 Score=31.57 Aligned_cols=69 Identities=14% Similarity=0.110 Sum_probs=48.3
Q ss_pred CccEE-EEeCCCCCC---CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE------CCCCHHHH
Q 001044 1088 RFDLI-LMDCQMPKM---DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT------KPIDSERM 1157 (1177)
Q Consensus 1088 ~~DLI-lmDi~MP~m---dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~------KP~~~~~L 1157 (1177)
..|.| ++++.-.++ -.++.++++++. .++||++-.+-...++..+++++|+|.++. .+.+.+++
T Consensus 167 G~d~i~~~~~~~~g~~~~~~~~~i~~l~~~------~~~pvia~GGi~~~~~~~~~~~~Ga~~v~vgsal~~~~~~~~~~ 240 (253)
T 1h5y_A 167 GAGEILLTSIDRDGTGLGYDVELIRRVADS------VRIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHFRVLSIAQV 240 (253)
T ss_dssp TCSEEEEEETTTTTTCSCCCHHHHHHHHHH------CSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSCHHHH
T ss_pred CCCEEEEecccCCCCcCcCCHHHHHHHHHh------cCCCEEEeCCCCCHHHHHHHHHcCCcHHHHHHHHHcCCCCHHHH
Confidence 35655 556543221 146788888864 258999988888788999999999999874 55666666
Q ss_pred HHHHH
Q 001044 1158 VSTIL 1162 (1177)
Q Consensus 1158 ~~~I~ 1162 (1177)
.+.+.
T Consensus 241 ~~~l~ 245 (253)
T 1h5y_A 241 KRYLK 245 (253)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 327
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=35.27 E-value=1.7e+02 Score=32.37 Aligned_cols=81 Identities=17% Similarity=0.191 Sum_probs=57.2
Q ss_pred HHHhhcCCEEEE-EcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC-----CCCHHHHHHHHHh
Q 001044 1039 KILEKVGATVSV-VPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP-----KMDGYEATIEIRK 1112 (1177)
Q Consensus 1039 ~~L~~~G~~v~~-a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP-----~mdG~e~~r~IR~ 1112 (1177)
..+++.|..+.. +.+.++|..+.+. ..|.|+.+-.-+ ....+++++++++
T Consensus 118 ~~l~~~g~~v~~~v~s~~~a~~a~~~------------------------GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~ 173 (326)
T 3bo9_A 118 RELKENGTKVIPVVASDSLARMVERA------------------------GADAVIAEGMESGGHIGEVTTFVLVNKVSR 173 (326)
T ss_dssp HHHHHTTCEEEEEESSHHHHHHHHHT------------------------TCSCEEEECTTSSEECCSSCHHHHHHHHHH
T ss_pred HHHHHcCCcEEEEcCCHHHHHHHHHc------------------------CCCEEEEECCCCCccCCCccHHHHHHHHHH
Confidence 445556776654 6777777665532 478777754211 1246788888876
Q ss_pred cccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1113 SESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1113 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
. .++|||+--+-.+.++..+++.+|+|.+..
T Consensus 174 ~------~~iPviaaGGI~~~~dv~~al~~GA~gV~v 204 (326)
T 3bo9_A 174 S------VNIPVIAAGGIADGRGMAAAFALGAEAVQM 204 (326)
T ss_dssp H------CSSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred H------cCCCEEEECCCCCHHHHHHHHHhCCCEEEe
Confidence 3 248999988888899999999999999864
No 328
>2kr6_A Presenilin-1; protease, alternative splicing, alzheimer disease, amyloidos apoptosis, cell adhesion, disease mutation; NMR {Homo sapiens}
Probab=35.17 E-value=24 Score=35.55 Aligned_cols=27 Identities=44% Similarity=0.688 Sum_probs=20.1
Q ss_pred cchhhHHHHHH----------HHHHHHHHHhHHhhhh
Q 001044 59 SYYSVFVARLA----------IMIMLAILIGLLTVLT 85 (1177)
Q Consensus 59 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~ 85 (1177)
=||||-|.|-| +..++|||+||..-|.
T Consensus 96 IFYSvLVgkAa~~~~~d~~t~~ac~vaIL~GL~~TL~ 132 (176)
T 2kr6_A 96 IFYSVLVGKASATASGDWNTTIACFVAILIGLCLTLL 132 (176)
T ss_dssp HHHHHHHHHHHHHSCCTTTTHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHH
Confidence 48999999988 2348899999654433
No 329
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=34.71 E-value=2.3e+02 Score=32.40 Aligned_cols=44 Identities=18% Similarity=0.245 Sum_probs=34.7
Q ss_pred HHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1103 GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1103 G~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
.+++++.+++.... .++|||+-.+-.+.++..+++.+|||....
T Consensus 241 ~~~~l~~v~~~~~~---~~ipVia~GGI~~~~d~~~ala~GAd~V~i 284 (404)
T 1eep_A 241 QITAICDVYEACNN---TNICIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_dssp HHHHHHHHHHHHTT---SSCEEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred hHHHHHHHHHHHhh---cCceEEEECCCCCHHHHHHHHHcCCCHHhh
Confidence 46667777653221 359999999989999999999999999876
No 330
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=34.66 E-value=3.7e+02 Score=31.72 Aligned_cols=101 Identities=14% Similarity=0.169 Sum_probs=64.8
Q ss_pred CcEEEEEe----cChHHHHHHHHHHhhc-CCEEE--EEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001044 1021 GLRILLAE----DTPLIQIVACKILEKV-GATVS--VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1093 (1177)
Q Consensus 1021 g~~ILIVd----D~~~~~~~l~~~L~~~-G~~v~--~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIl 1093 (1177)
|..++.++ +.....+.++.+-+.. +..|. .+.+.++|..+.+. ..|.|.
T Consensus 243 G~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~g~v~t~e~a~~l~~a------------------------GaD~I~ 298 (496)
T 4fxs_A 243 GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEA------------------------GVSAVK 298 (496)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEEEEECSHHHHHHHHHH------------------------TCSEEE
T ss_pred cCceEEeccccccchHHHHHHHHHHHHCCCceEEEcccCcHHHHHHHHHh------------------------CCCEEE
Confidence 45667766 3334445555555554 33433 36777777776653 578887
Q ss_pred EeCCCCC------------CCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1094 MDCQMPK------------MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1094 mDi~MP~------------mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
.... |+ ...++++..+.+.... ..+|||+--+-....+..+++.+|||..+.
T Consensus 299 Vg~g-~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~---~~iPVIa~GGI~~~~di~kala~GAd~V~i 362 (496)
T 4fxs_A 299 VGIG-PGSICTTRIVTGVGVPQITAIADAAGVANE---YGIPVIADGGIRFSGDISKAIAAGASCVMV 362 (496)
T ss_dssp ECSS-CCTTBCHHHHHCCCCCHHHHHHHHHHHHGG---GTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred ECCC-CCcCcccccccCCCccHHHHHHHHHHHhcc---CCCeEEEeCCCCCHHHHHHHHHcCCCeEEe
Confidence 6421 11 1235566666653222 249999988888999999999999999875
No 331
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=34.58 E-value=63 Score=34.05 Aligned_cols=68 Identities=15% Similarity=0.193 Sum_probs=47.3
Q ss_pred Ccc-EEEEeCCCCCC---CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHc---CCCEEEE------CCCCH
Q 001044 1088 RFD-LILMDCQMPKM---DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV---GMNAYLT------KPIDS 1154 (1177)
Q Consensus 1088 ~~D-LIlmDi~MP~m---dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~a---G~d~yL~------KP~~~ 1154 (1177)
.+| +++++..-..+ -.++.+++|++. ..+|||+-.+-...++..+++++ |+|.++. .|++.
T Consensus 159 G~~~i~~~~~~~~~~~~g~~~~~~~~i~~~------~~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~vG~al~~~~~~~ 232 (244)
T 1vzw_A 159 GCARYVVTDIAKDGTLQGPNLELLKNVCAA------TDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKALYAKAFTL 232 (244)
T ss_dssp TCCCEEEEEC-------CCCHHHHHHHHHT------CSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHTTSSCH
T ss_pred CCCEEEEeccCcccccCCCCHHHHHHHHHh------cCCCEEEECCCCCHHHHHHHHhhccCCCceeeeeHHHHcCCCCH
Confidence 466 56677652221 137888999853 25899999888888999999999 9998874 56666
Q ss_pred HHHHHHH
Q 001044 1155 ERMVSTI 1161 (1177)
Q Consensus 1155 ~~L~~~I 1161 (1177)
+++.+.+
T Consensus 233 ~~~~~~~ 239 (244)
T 1vzw_A 233 EEALEAT 239 (244)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6655543
No 332
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=34.24 E-value=72 Score=33.74 Aligned_cols=69 Identities=17% Similarity=0.192 Sum_probs=49.2
Q ss_pred Ccc-EEEEeCCCCCC-CH--HHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE------CCCCHHHH
Q 001044 1088 RFD-LILMDCQMPKM-DG--YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT------KPIDSERM 1157 (1177)
Q Consensus 1088 ~~D-LIlmDi~MP~m-dG--~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~------KP~~~~~L 1157 (1177)
.++ +++++..-.++ .| ++.+++|++. .++|||+-.+-...++..+++++|+|+++. .|+++++.
T Consensus 164 G~~~i~~~~~~~~g~~~g~~~~~~~~l~~~------~~ipvia~GGI~~~~d~~~~~~~Gadgv~vGsal~~~~~~~~~~ 237 (253)
T 1thf_D 164 GAGEILLTSIDRDGTKSGYDTEMIRFVRPL------TTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDVREL 237 (253)
T ss_dssp TCSEEEEEETTTTTSCSCCCHHHHHHHGGG------CCSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTCSCHHHH
T ss_pred CCCEEEEEeccCCCCCCCCCHHHHHHHHHh------cCCCEEEECCCCCHHHHHHHHHcCChHHHHHHHHHcCCCCHHHH
Confidence 356 55576652221 22 8888888853 258999998888889999999999999875 45676666
Q ss_pred HHHHH
Q 001044 1158 VSTIL 1162 (1177)
Q Consensus 1158 ~~~I~ 1162 (1177)
...+.
T Consensus 238 ~~~l~ 242 (253)
T 1thf_D 238 KEYLK 242 (253)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
No 333
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=33.73 E-value=56 Score=35.94 Aligned_cols=65 Identities=18% Similarity=0.237 Sum_probs=44.9
Q ss_pred HHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCCCCCCC
Q 001044 1104 YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEATG 1174 (1177)
Q Consensus 1104 ~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~~~~~~~ 1174 (1177)
-++.+..|+..+ +..+|.++.++ .++..+++++|+|..+.-|++++.+...+..+-.+.+-+++|
T Consensus 183 ~~av~~ar~~~~-----~~~~IgVev~t-~eea~eA~~aGaD~I~ld~~~~~~~k~av~~v~~~ipi~AsG 247 (286)
T 1x1o_A 183 GEAVRRAKARAP-----HYLKVEVEVRS-LEELEEALEAGADLILLDNFPLEALREAVRRVGGRVPLEASG 247 (286)
T ss_dssp HHHHHHHHHHSC-----TTSCEEEEESS-HHHHHHHHHHTCSEEEEESCCHHHHHHHHHHHTTSSCEEEES
T ss_pred HHHHHHHHHhCC-----CCCEEEEEeCC-HHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhCCCCeEEEEc
Confidence 346677776532 22345556654 777889999999999999999999988876653344444444
No 334
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=33.61 E-value=1.3e+02 Score=30.97 Aligned_cols=56 Identities=16% Similarity=0.252 Sum_probs=38.8
Q ss_pred CccEEEEeCCCC--------CCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1088 RFDLILMDCQMP--------KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1088 ~~DLIlmDi~MP--------~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
.+|.|++..-.| ...|++.++++++.. .++||++.-+-. .++..+++++|+|.+..
T Consensus 136 g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~-----~~~pvia~GGI~-~~nv~~~~~~Ga~gv~v 199 (227)
T 2tps_A 136 GADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQG-----ISIPIVGIGGIT-IDNAAPVIQAGADGVSM 199 (227)
T ss_dssp TCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTT-----CCCCEEEESSCC-TTTSHHHHHTTCSEEEE
T ss_pred CCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhC-----CCCCEEEEcCCC-HHHHHHHHHcCCCEEEE
Confidence 589888622111 123688888888642 138998877666 77888899999999864
No 335
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=33.06 E-value=2.1e+02 Score=33.76 Aligned_cols=87 Identities=17% Similarity=0.125 Sum_probs=57.4
Q ss_pred HHHHHHHHHhhc-CCEEE--EEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeC-------------
Q 001044 1033 IQIVACKILEKV-GATVS--VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDC------------- 1096 (1177)
Q Consensus 1033 ~~~~l~~~L~~~-G~~v~--~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi------------- 1096 (1177)
..+.++.+-+.. +..|. .+.+.++|..+.+. ..|.|..-.
T Consensus 283 ~~~~i~~i~~~~~~~pvi~~~v~t~~~a~~l~~a------------------------Gad~I~vg~~~G~~~~t~~~~~ 338 (514)
T 1jcn_A 283 QIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDA------------------------GVDGLRVGMGCGSICITQEVMA 338 (514)
T ss_dssp HHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHH------------------------TCSEEEECSSCSCCBTTBCCCS
T ss_pred HHHHHHHHHHhCCCCceEecccchHHHHHHHHHc------------------------CCCEEEECCCCCcccccccccC
Confidence 345555555544 55555 36777777766643 366665522
Q ss_pred -CCCCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1097 -QMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1097 -~MP~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
.+|....++.++++++. ..+|||+--+-....+..+++.+|||....
T Consensus 339 ~g~~~~~~~~~~~~~~~~------~~ipVia~GGI~~~~di~kala~GAd~V~i 386 (514)
T 1jcn_A 339 CGRPQGTAVYKVAEYARR------FGVPIIADGGIQTVGHVVKALALGASTVMM 386 (514)
T ss_dssp CCCCHHHHHHHHHHHHGG------GTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CCccchhHHHHHHHHHhh------CCCCEEEECCCCCHHHHHHHHHcCCCeeeE
Confidence 23333346667777653 249999999988999999999999998754
No 336
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=33.01 E-value=1.9e+02 Score=29.79 Aligned_cols=96 Identities=8% Similarity=0.013 Sum_probs=64.5
Q ss_pred cCCEEE-EEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCC--CHHHHHHHHHhcccccCCC
Q 001044 1044 VGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM--DGYEATIEIRKSESEHGAR 1120 (1177)
Q Consensus 1044 ~G~~v~-~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~m--dG~e~~r~IR~~~~~~~~~ 1120 (1177)
.|..+. -+.+..|+..+.+. ..|.|-+ -|.. -|.+.++.+|... +
T Consensus 103 ~g~~~i~G~~t~~e~~~A~~~------------------------Gad~v~~---fpa~~~gG~~~lk~l~~~~-----~ 150 (207)
T 2yw3_A 103 RGVPYLPGVLTPTEVERALAL------------------------GLSALKF---FPAEPFQGVRVLRAYAEVF-----P 150 (207)
T ss_dssp HTCCEEEEECSHHHHHHHHHT------------------------TCCEEEE---TTTTTTTHHHHHHHHHHHC-----T
T ss_pred hCCCEEecCCCHHHHHHHHHC------------------------CCCEEEE---ecCccccCHHHHHHHHhhC-----C
Confidence 454433 47888898887752 5787766 4532 3889999998742 3
Q ss_pred CcceEEEecCCCHHHHHHHHHcCCCEEE-----ECCCCHHHHHHHHHHHhhcCCCCCC
Q 001044 1121 NIPIVALTAHAMNADEKKCLGVGMNAYL-----TKPIDSERMVSTILRLTKNMPSEAT 1173 (1177)
Q Consensus 1121 ~ipIIalTa~~~~~~~~~~l~aG~d~yL-----~KP~~~~~L~~~I~~l~~~~~~~~~ 1173 (1177)
++|+++.-+-. .++...++++|++.+. .+ -+++++.++.+++.+....+++
T Consensus 151 ~ipvvaiGGI~-~~n~~~~l~aGa~~vavgSai~~-~d~~~i~~~a~~~~~~~~~~~~ 206 (207)
T 2yw3_A 151 EVRFLPTGGIK-EEHLPHYAALPNLLAVGGSWLLQ-GNLEAVRAKVRAAKALLSPQAP 206 (207)
T ss_dssp TCEEEEBSSCC-GGGHHHHHTCSSBSCEEESGGGS-SCHHHHHHHHHHHHHHC-----
T ss_pred CCcEEEeCCCC-HHHHHHHHhCCCcEEEEehhhhC-CCHHHHHHHHHHHHHHhcccCC
Confidence 68998765554 6788899999988765 33 4667788888888777666554
No 337
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=32.31 E-value=1.7e+02 Score=32.15 Aligned_cols=73 Identities=11% Similarity=0.068 Sum_probs=44.6
Q ss_pred ceEEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHH
Q 001044 851 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETA 925 (1177)
Q Consensus 851 ~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~ 925 (1177)
.+++++|+.++++++..+-+.++..... ....+ ++..............+.|..-++.||+....+...+...
T Consensus 64 ~dlvl~D~~mp~~~G~~~~~~l~~~~~~-~~~~i-i~~s~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~l~~~v~~~ 136 (358)
T 3bre_A 64 PTVILQDLVMPGVDGLTLLAAYRGNPAT-RDIPI-IVLSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYH 136 (358)
T ss_dssp CSEEEEESBCSSSBHHHHHHHHTTSTTT-TTSCE-EEEESSCCHHHHHHHHHTTCSEEEESCCCHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCccc-CCCcE-EEEeCCCCHHHHHHHHhcChheEeeccCCHHHHHHHHHHH
Confidence 4688999999999875443433321111 11222 2333333333444555678889999999998888776654
No 338
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=31.84 E-value=44 Score=30.00 Aligned_cols=73 Identities=15% Similarity=0.144 Sum_probs=39.7
Q ss_pred ceEEEEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccCChhHHHHHHHHHHh
Q 001044 851 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 927 (1177)
Q Consensus 851 ~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 927 (1177)
..++++|..+.+.++..+-+.+ ........+.+ ..............+.|...++.||+....+...+..+..
T Consensus 48 ~dlvi~d~~~~~~~g~~~~~~l---~~~~~~~~ii~-~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 120 (124)
T 1dc7_A 48 PDVLLSDIRMPGMDGLALLKQI---KQRHPMLPVII-MTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 (124)
T ss_dssp CSCEEECSCSSHHHHCSTHHHH---HHHCTTSCCCC-BCCSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHH
T ss_pred CCEEEEeeecCCCCHHHHHHHH---HhhCCCCCEEE-EecCCCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHHHH
Confidence 4577788877665442211211 11111222222 2222222333344556778889999999999988876653
No 339
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=31.80 E-value=64 Score=35.66 Aligned_cols=63 Identities=14% Similarity=0.126 Sum_probs=47.3
Q ss_pred HHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCCCCCCC
Q 001044 1105 EATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEATG 1174 (1177)
Q Consensus 1105 e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~~~~~~~ 1174 (1177)
++.++.|+.. +..||.+-... .++..+++++|+|-.+.--+++++|.+++..+-.+..-+++|
T Consensus 196 ~Av~~ar~~~-----p~~kIeVEv~t--l~e~~eAl~aGaDiImLDn~s~~~l~~av~~~~~~v~leaSG 258 (300)
T 3l0g_A 196 LAIQRLRKNL-----KNEYIAIECDN--ISQVEESLSNNVDMILLDNMSISEIKKAVDIVNGKSVLEVSG 258 (300)
T ss_dssp HHHHHHHHHS-----SSCCEEEEESS--HHHHHHHHHTTCSEEEEESCCHHHHHHHHHHHTTSSEEEEES
T ss_pred HHHHHHHHhC-----CCCCEEEEECC--HHHHHHHHHcCCCEEEECCCCHHHHHHHHHhhcCceEEEEEC
Confidence 5667777653 34788876654 577889999999999999999999999998765444444544
No 340
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=31.77 E-value=4.4e+02 Score=29.53 Aligned_cols=103 Identities=15% Similarity=0.130 Sum_probs=64.1
Q ss_pred cEEEEEe----cChHHHHHHHHHHhhc-CCEEE--EEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEE
Q 001044 1022 LRILLAE----DTPLIQIVACKILEKV-GATVS--VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILM 1094 (1177)
Q Consensus 1022 ~~ILIVd----D~~~~~~~l~~~L~~~-G~~v~--~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlm 1094 (1177)
..++.++ +.....+.++.+=+.. +..+. .+.+.++|..+.+. ..|.|..
T Consensus 133 ~~~i~i~~~~g~~~~~~~~i~~lr~~~~~~~vi~g~v~t~e~A~~a~~a------------------------GaD~I~v 188 (351)
T 2c6q_A 133 VKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILS------------------------GADIIKV 188 (351)
T ss_dssp CCEEEEECSCTTBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHT------------------------TCSEEEE
T ss_pred CCEEEEEecCCCcHHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHh------------------------CCCEEEE
Confidence 3455554 2233344454443443 55443 47888888877753 5888866
Q ss_pred eCCCCC------------CCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEE-EECCC
Q 001044 1095 DCQMPK------------MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAY-LTKPI 1152 (1177)
Q Consensus 1095 Di~MP~------------mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~y-L~KP~ 1152 (1177)
-. -|+ ..-++++..+++.... ..+|||+--+-.+..|..+++.+|||.. +-+||
T Consensus 189 ~~-g~G~~~~~r~~~g~~~p~~~~l~~v~~~~~~---~~ipvIa~GGI~~g~di~kAlalGA~~V~vG~~f 255 (351)
T 2c6q_A 189 GI-GPGSVCTTRKKTGVGYPQLSAVMECADAAHG---LKGHIISDGGCSCPGDVAKAFGAGADFVMLGGML 255 (351)
T ss_dssp CS-SCSTTBCHHHHHCBCCCHHHHHHHHHHHHHH---TTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTT
T ss_pred CC-CCCcCcCccccCCCCccHHHHHHHHHHHHhh---cCCcEEEeCCCCCHHHHHHHHHcCCCceeccHHH
Confidence 42 232 1234455556543222 2499999999999999999999999976 44666
No 341
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=31.74 E-value=1.2e+02 Score=30.37 Aligned_cols=54 Identities=13% Similarity=0.229 Sum_probs=31.6
Q ss_pred CCcEEEEEecChHHHHHHHHHHhh--cCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCC
Q 001044 1020 EGLRILLAEDTPLIQIVACKILEK--VGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ 1097 (1177)
Q Consensus 1020 ~g~~ILIVdD~~~~~~~l~~~L~~--~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~ 1097 (1177)
.|.+||++|=++.. -+...+.. .++.+..+.. ....+.+... ...||+||+|+-
T Consensus 29 ~g~~vlliD~D~~~--~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~l---------------------~~~yD~viiD~~ 84 (206)
T 4dzz_A 29 SGYNIAVVDTDPQM--SLTNWSKAGKAAFDVFTAAS-EKDVYGIRKD---------------------LADYDFAIVDGA 84 (206)
T ss_dssp TTCCEEEEECCTTC--HHHHHHTTSCCSSEEEECCS-HHHHHTHHHH---------------------TTTSSEEEEECC
T ss_pred CCCeEEEEECCCCC--CHHHHHhcCCCCCcEEecCc-HHHHHHHHHh---------------------cCCCCEEEEECC
Confidence 47799999988653 23444433 3455555543 2333333322 236999999984
No 342
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=31.27 E-value=54 Score=36.06 Aligned_cols=64 Identities=9% Similarity=0.114 Sum_probs=46.1
Q ss_pred HHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCCCCCCCC
Q 001044 1105 EATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEATGT 1175 (1177)
Q Consensus 1105 e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~~~~~~~~ 1175 (1177)
++.++.|+.. +..||.+-.. +.++..+++++|+|..+...+++++|.+++..+-.+..-+++|.
T Consensus 187 ~Av~~ar~~~-----~~~~IeVEv~--tl~ea~eAl~aGaD~I~LDn~~~~~l~~av~~~~~~v~ieaSGG 250 (287)
T 3tqv_A 187 KAVTKAKKLD-----SNKVVEVEVT--NLDELNQAIAAKADIVMLDNFSGEDIDIAVSIARGKVALEVSGN 250 (287)
T ss_dssp HHHHHHHHHC-----TTSCEEEEES--SHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHHTTTCEEEEESS
T ss_pred HHHHHHHhhC-----CCCcEEEEeC--CHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHhhcCCceEEEECC
Confidence 5667777652 3467777443 33678899999999999999999999988876654444445543
No 343
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=31.14 E-value=2.1e+02 Score=32.38 Aligned_cols=58 Identities=17% Similarity=0.133 Sum_probs=42.0
Q ss_pred CccEEEEeCC----CC-CCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1088 RFDLILMDCQ----MP-KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1088 ~~DLIlmDi~----MP-~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
..|.|.+.-. +. ...-++++.++++.-. .++|||+-.+-.+.+|..+++.+|||.+..
T Consensus 246 Gad~I~vs~~ggr~~~~~~~~~~~l~~v~~~~~----~~ipvia~GGI~~~~D~~k~l~~GAdaV~i 308 (370)
T 1gox_A 246 GAAGIIVSNHGARQLDYVPATIMALEEVVKAAQ----GRIPVFLDGGVRRGTDVFKALALGAAGVFI 308 (370)
T ss_dssp TCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTT----TSSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred CCCEEEECCCCCccCCCcccHHHHHHHHHHHhC----CCCEEEEECCCCCHHHHHHHHHcCCCEEee
Confidence 4677666321 11 1134777888876422 259999999999999999999999999876
No 344
>3s83_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, signaling protein; HET: MSE; 1.34A {Caulobacter crescentus} PDB: 3u2e_A
Probab=30.59 E-value=1e+02 Score=32.65 Aligned_cols=101 Identities=14% Similarity=0.177 Sum_probs=66.9
Q ss_pred HHHHHHhhcCCEEEE--EcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCC----C-CCCHHHHHH
Q 001044 1036 VACKILEKVGATVSV--VPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM----P-KMDGYEATI 1108 (1177)
Q Consensus 1036 ~l~~~L~~~G~~v~~--a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~M----P-~mdG~e~~r 1108 (1177)
.....|++.|+.+.. +..|...+..+.. -+||.|=+|-.+ . ......+++
T Consensus 143 ~~l~~l~~~G~~ialDdfG~g~ssl~~L~~-----------------------l~~d~iKiD~~~v~~~~~~~~~~~~~~ 199 (259)
T 3s83_A 143 VILKTLRDAGAGLALDDFGTGFSSLSYLTR-----------------------LPFDTLKIDRYFVRTMGNNAGSAKIVR 199 (259)
T ss_dssp HHHHHHHHHTCEEEEECC---CHHHHHHHH-----------------------SCCCEEEECHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEECCCCCchhHHHHHh-----------------------CCCCEEEECHHHHhhhhcCchHHHHHH
Confidence 344567788998765 5567777787764 379999999532 1 122344556
Q ss_pred HHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEE----EECCCCHHHHHHHHHH
Q 001044 1109 EIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAY----LTKPIDSERMVSTILR 1163 (1177)
Q Consensus 1109 ~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~y----L~KP~~~~~L~~~I~~ 1163 (1177)
.|...... ..+.+| ..+-.+.++...+.+.|+|.+ +.||.+.+++...+..
T Consensus 200 ~i~~~a~~---~g~~vi-aeGVEt~~~~~~l~~lG~~~~QG~~~~~p~~~~~~~~~l~~ 254 (259)
T 3s83_A 200 SVVKLGQD---LDLEVV-AEGVENAEMAHALQSLGCDYGQGFGYAPALSPQEAEVYLNE 254 (259)
T ss_dssp HHHHHHHH---TTCEEE-ECCCCSHHHHHHHHHHTCCEECBTTTBCCBCHHHHHHHHHH
T ss_pred HHHHHHHH---CCCeEE-EEeCCCHHHHHHHHhcCCCEeecCcccCCCCHHHHHHHHHH
Confidence 66554333 235555 477778888889999999854 7899999999877654
No 345
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=28.87 E-value=2.8e+02 Score=30.67 Aligned_cols=56 Identities=14% Similarity=0.171 Sum_probs=42.1
Q ss_pred CccEEEEeCCCC-----CCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1088 RFDLILMDCQMP-----KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1088 ~~DLIlmDi~MP-----~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
..|.|+.+-.-+ ....+++++++++. .++|||+--+-.+.++..+++.+|+|....
T Consensus 130 GaD~i~v~g~~~GG~~g~~~~~~ll~~i~~~------~~iPViaaGGI~~~~~~~~al~~GAdgV~v 190 (332)
T 2z6i_A 130 GADAVIAEGMEAGGHIGKLTTMTLVRQVATA------ISIPVIAAGGIADGEGAAAGFMLGAEAVQV 190 (332)
T ss_dssp TCSCEEEECTTSSEECCSSCHHHHHHHHHHH------CSSCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred CCCEEEEECCCCCCCCCCccHHHHHHHHHHh------cCCCEEEECCCCCHHHHHHHHHcCCCEEEe
Confidence 478777763211 13457888888864 248999988888899999999999998763
No 346
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=28.46 E-value=49 Score=35.82 Aligned_cols=57 Identities=23% Similarity=0.272 Sum_probs=39.0
Q ss_pred HHHHHHHHHhcccccCCCCcceEEEecC------CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Q 001044 1103 GYEATIEIRKSESEHGARNIPIVALTAH------AMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL 1164 (1177)
Q Consensus 1103 G~e~~r~IR~~~~~~~~~~ipIIalTa~------~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1164 (1177)
+++.+++||+.. .++||++++-. ........|.++|+|+++.=.+..+++...+..+
T Consensus 81 ~~~~v~~ir~~~-----~~~Pv~lm~y~n~v~~~g~~~~~~~~~~aGadgii~~d~~~e~~~~~~~~~ 143 (268)
T 1qop_A 81 CFEMLAIIREKH-----PTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAA 143 (268)
T ss_dssp HHHHHHHHHHHC-----SSSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTCCGGGCHHHHHHH
T ss_pred HHHHHHHHHhcC-----CCCCEEEEEcccHHHHhhHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHH
Confidence 456677887641 24899888622 2246777899999999999888776655444433
No 347
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=28.45 E-value=92 Score=32.17 Aligned_cols=52 Identities=19% Similarity=0.214 Sum_probs=40.6
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1088 RFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1088 ~~DLIlmDi~MP~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
.||+| =-||+.-- ++.+++++. ..+|||+=-.-.+.++..+|+++||+..-+
T Consensus 127 ~PD~i---EiLPGi~p-~iI~~i~~~------~~~PiIaGGlI~~~edv~~al~aGA~aVsT 178 (192)
T 3kts_A 127 QPDCI---ELLPGIIP-EQVQKMTQK------LHIPVIAGGLIETSEQVNQVIASGAIAVTT 178 (192)
T ss_dssp CCSEE---EEECTTCH-HHHHHHHHH------HCCCEEEESSCCSHHHHHHHHTTTEEEEEE
T ss_pred CCCEE---EECCchhH-HHHHHHHHh------cCCCEEEECCcCCHHHHHHHHHcCCeEEEe
Confidence 58987 22576543 678888864 248999987788899999999999998765
No 348
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=28.04 E-value=1.2e+02 Score=35.41 Aligned_cols=33 Identities=12% Similarity=0.042 Sum_probs=20.2
Q ss_pred CcEEEEEecChH---HHHHHHHHHhhcCCEEEEEcC
Q 001044 1021 GLRILLAEDTPL---IQIVACKILEKVGATVSVVPD 1053 (1177)
Q Consensus 1021 g~~ILIVdD~~~---~~~~l~~~L~~~G~~v~~a~n 1053 (1177)
|.+|++||-++. ....+...-+..|..+..+..
T Consensus 129 G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~ 164 (433)
T 2xxa_A 129 KKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDV 164 (433)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCS
T ss_pred CCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCC
Confidence 789999998862 223333334456777766543
No 349
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=27.64 E-value=3.6e+02 Score=27.06 Aligned_cols=112 Identities=16% Similarity=0.110 Sum_probs=65.2
Q ss_pred EEEeecChhHHHHHHHHHHhccceeeeccchhhhHHHHHHhcCCCCCCCCCCCCCCCCCChhhHHHhhhhhhccCCceEE
Q 001044 775 VVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVV 854 (1177)
Q Consensus 775 v~~~~~~~~~r~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v 854 (1177)
+++.++....+..+...+...|..+..+.+...+...+.. .+.+++
T Consensus 3 ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~----------------------------------~~~dlv 48 (223)
T 2hqr_A 3 VLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDI----------------------------------RNYDLV 48 (223)
T ss_dssp EEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHTT----------------------------------SCCSEE
T ss_pred EEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHhc----------------------------------CCCCEE
Confidence 5667777777888888888877766555554443332211 122333
Q ss_pred EEEecccccChhHHHHHhhhhhhhhccceeeeeeccCCCchhhhhhhhcCCcEEEeccC-ChhHHHHHHHHHHhc
Q 001044 855 VIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPL-YKGKMIQLLETAVRG 928 (1177)
Q Consensus 855 ~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~-~~~~l~~~l~~~~~~ 928 (1177)
+ ++++++..+-+.++ .......+ ++..............+.|...++.||+ ....+...+..+..+
T Consensus 49 i----lp~~~g~~~~~~lr---~~~~~~~i-i~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~ 115 (223)
T 2hqr_A 49 M----VSDKNALSFVSRIK---EKHSSIVV-LVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRF 115 (223)
T ss_dssp E----ECCTTHHHHHHHHH---HHCTTSEE-EEEESSCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSS
T ss_pred E----eCCCCHHHHHHHHH---hCCCCCcE-EEEECCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhcc
Confidence 3 56666533323222 22112223 3333333334445566778899999999 999999988877653
No 350
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=27.57 E-value=1.2e+02 Score=31.88 Aligned_cols=53 Identities=15% Similarity=0.196 Sum_probs=39.5
Q ss_pred EEEEeCCCCCCCH---HHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1091 LILMDCQMPKMDG---YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1091 LIlmDi~MP~mdG---~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
+.+.|.....+.. ++.+++|++. ..+||++...-.+.++..+++++|+|..+.
T Consensus 48 i~v~d~~~~~~~~~~~~~~i~~i~~~------~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~l 103 (252)
T 1ka9_F 48 LVFLDISATHEERAILLDVVARVAER------VFIPLTVGGGVRSLEDARKLLLSGADKVSV 103 (252)
T ss_dssp EEEEECCSSTTCHHHHHHHHHHHHTT------CCSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred EEEEcCCccccCccccHHHHHHHHHh------CCCCEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 5566876544333 4556666642 359999999999999999999999999876
No 351
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=27.52 E-value=5.9e+02 Score=27.15 Aligned_cols=73 Identities=15% Similarity=0.256 Sum_probs=50.8
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHH
Q 001044 1088 RFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPI-DSERMVSTILRL 1164 (1177)
Q Consensus 1088 ~~DLIlmDi~MP~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~-~~~~L~~~I~~l 1164 (1177)
.+|.|++|++=-..+--.+...++..... ...|+|=+-+ .+..+..+++++|++..+.==+ +.+++...+..+
T Consensus 37 g~D~vilDlEhav~~~~k~~~~l~a~~~~---~~~~~VRVn~-~~~~di~~~ld~G~~gI~lP~v~saed~~~~~~~~ 110 (261)
T 3qz6_A 37 GLDYFIVDCEHAAYTFREINHLVSVAKNA---GVSVLVRIPQ-VDRAHVQRLLDIGAEGFMIPGVQSAETMRETVRLA 110 (261)
T ss_dssp TCSEEEEESSSSCCCHHHHHHHHHHHHHH---TCEEEEECSS-CCHHHHHHHHHHTCCEEEETTCCSHHHHHHHHHHH
T ss_pred CcCEEEEeccCCCCCHHHHHHHHHHHhhc---CCeEEEEeCC-CCHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHHh
Confidence 69999999998888887777777764321 2234555554 4567899999999998765333 566666555443
No 352
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=27.27 E-value=1.9e+02 Score=30.12 Aligned_cols=40 Identities=15% Similarity=0.165 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1103 GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1103 G~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
+++.++++++. ++||++.-+-.+.++..+++++|+|.++.
T Consensus 175 ~~~~i~~~~~~-------~ipvia~GGI~s~~~~~~~~~~Gad~v~v 214 (234)
T 1yxy_A 175 DVALIEALCKA-------GIAVIAEGKIHSPEEAKKINDLGVAGIVV 214 (234)
T ss_dssp CHHHHHHHHHT-------TCCEEEESCCCSHHHHHHHHTTCCSEEEE
T ss_pred CHHHHHHHHhC-------CCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 36778888752 38999988888899999999999999875
No 353
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=27.07 E-value=78 Score=34.78 Aligned_cols=57 Identities=16% Similarity=0.166 Sum_probs=42.1
Q ss_pred HHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 001044 1104 YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1166 (1177)
Q Consensus 1104 ~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~ 1166 (1177)
-++.++.|+..+ ...+|.+ ... +.++..+++++|+|..+.-+++++++...+..+-.
T Consensus 180 ~~av~~ar~~~~----~~~~I~V-EV~-tleea~eA~~aGaD~I~LDn~~~e~l~~av~~l~~ 236 (285)
T 1o4u_A 180 ERAVQEVRKIIP----FTTKIEV-EVE-NLEDALRAVEAGADIVMLDNLSPEEVKDISRRIKD 236 (285)
T ss_dssp HHHHHHHHTTSC----TTSCEEE-EES-SHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC----CCceEEE-EeC-CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhhc
Confidence 356777776532 1245555 444 36788899999999999999999999988877644
No 354
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=26.91 E-value=43 Score=36.81 Aligned_cols=71 Identities=20% Similarity=0.147 Sum_probs=47.9
Q ss_pred CcEEEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCC
Q 001044 1021 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1100 (1177)
Q Consensus 1021 g~~ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~ 1100 (1177)
+-++.+||-++.....++.-++...-.-+...|+.+++..+.. ...++|+||+|-=--.
T Consensus 113 ~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~---------------------~~~~fdLVfiDPPYe~ 171 (283)
T 2oo3_A 113 QDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLP---------------------PPEKRGLIFIDPSYER 171 (283)
T ss_dssp TSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCS---------------------CTTSCEEEEECCCCCS
T ss_pred CCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcC---------------------CCCCccEEEECCCCCC
Confidence 4589999999999999988887643334456788888876631 1236999999963332
Q ss_pred -CCHHHHHHHHHh
Q 001044 1101 -MDGYEATIEIRK 1112 (1177)
Q Consensus 1101 -mdG~e~~r~IR~ 1112 (1177)
.+.-++++.|.+
T Consensus 172 k~~~~~vl~~L~~ 184 (283)
T 2oo3_A 172 KEEYKEIPYAIKN 184 (283)
T ss_dssp TTHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHH
Confidence 233444445544
No 355
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=26.84 E-value=51 Score=33.77 Aligned_cols=67 Identities=10% Similarity=0.184 Sum_probs=42.2
Q ss_pred EeCCCCC--CCHHHHHHHHHhcccccCCCCcceEE--EecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHh
Q 001044 1094 MDCQMPK--MDGYEATIEIRKSESEHGARNIPIVA--LTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLT 1165 (1177)
Q Consensus 1094 mDi~MP~--mdG~e~~r~IR~~~~~~~~~~ipIIa--lTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~ 1165 (1177)
.++++|- .+|.+..+.||+.. ++.||++ .+.+.-......+.++|+|....-+...++....+.+.+
T Consensus 29 iev~~~~~~~~g~~~i~~l~~~~-----~~~~i~~~l~~~di~~~~~~~a~~~Gad~v~vh~~~~~~~~~~~~~~~ 99 (207)
T 3ajx_A 29 IELGTPLIKAEGLSVITAVKKAH-----PDKIVFADMKTMDAGELEADIAFKAGADLVTVLGSADDSTIAGAVKAA 99 (207)
T ss_dssp EEECHHHHHHHCTHHHHHHHHHS-----TTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSCHHHHHHHHHHH
T ss_pred EEECcHHHHhhCHHHHHHHHHhC-----CCCeEEEEEEecCccHHHHHHHHhCCCCEEEEeccCChHHHHHHHHHH
Confidence 6777663 56888999999752 2467775 444212334678999999999877765533333333333
No 356
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=26.66 E-value=1.4e+02 Score=30.63 Aligned_cols=75 Identities=23% Similarity=0.303 Sum_probs=47.6
Q ss_pred CccEEEEeCCCCCCCHH-------HHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE-----CCCCHH
Q 001044 1088 RFDLILMDCQMPKMDGY-------EATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT-----KPIDSE 1155 (1177)
Q Consensus 1088 ~~DLIlmDi~MP~mdG~-------e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~-----KP~~~~ 1155 (1177)
..|.|+.+...|+.+|- +-.+++|+.....+ .++||++ ++--..++..++.++|+|.++. +.-++.
T Consensus 131 ~~d~vl~~~~~~g~~g~~~~~~~~~~i~~~~~~~~~~~-~~~~i~v-~GGI~~~~~~~~~~~Gad~vvvGsai~~~~d~~ 208 (220)
T 2fli_A 131 LVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKG-LSFDIEV-DGGVDNKTIRACYEAGANVFVAGSYLFKASDLV 208 (220)
T ss_dssp TCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTT-CCCEEEE-ESSCCTTTHHHHHHHTCCEEEESHHHHTSSCHH
T ss_pred hCCEEEEEEECCCCcccccCHHHHHHHHHHHHHHHhcC-CCceEEE-ECcCCHHHHHHHHHcCCCEEEEChHHhCCCCHH
Confidence 47899988877876662 44566665432111 2467665 5544567788899999999875 445665
Q ss_pred HHHHHHHHH
Q 001044 1156 RMVSTILRL 1164 (1177)
Q Consensus 1156 ~L~~~I~~l 1164 (1177)
+-...+++.
T Consensus 209 ~a~~~~~~~ 217 (220)
T 2fli_A 209 SQVQTLRTA 217 (220)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555443
No 357
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=26.58 E-value=3.8e+02 Score=30.06 Aligned_cols=78 Identities=14% Similarity=0.135 Sum_probs=54.4
Q ss_pred hhcCCEEE-EEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCC---------CC-----C--CCHH
Q 001044 1042 EKVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ---------MP-----K--MDGY 1104 (1177)
Q Consensus 1042 ~~~G~~v~-~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~---------MP-----~--mdG~ 1104 (1177)
.+.|..+. .+.+.++|..+.+ ...|.|+.+-. .| . .+.+
T Consensus 142 ~~~g~~v~~~v~t~~~a~~a~~------------------------~GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~ 197 (369)
T 3bw2_A 142 RRAGTLTLVTATTPEEARAVEA------------------------AGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLL 197 (369)
T ss_dssp HHTTCEEEEEESSHHHHHHHHH------------------------TTCSEEEEECTTCSEECCCSSCCGGGTTCCCCHH
T ss_pred HHCCCeEEEECCCHHHHHHHHH------------------------cCCCEEEEeCCCcCCcCCCcccccccccccccHH
Confidence 33566544 4677777765553 24788888531 11 0 2348
Q ss_pred HHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1105 EATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1105 e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
++++++++. .++|||+.-+-.+.++..+++++|+|.+..
T Consensus 198 ~~l~~i~~~------~~iPViaaGGI~~~~~~~~~l~~GAd~V~v 236 (369)
T 3bw2_A 198 SLLAQVREA------VDIPVVAAGGIMRGGQIAAVLAAGADAAQL 236 (369)
T ss_dssp HHHHHHHHH------CSSCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHh------cCceEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 888888864 258999888887899999999999998763
No 358
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=26.34 E-value=1.6e+02 Score=32.31 Aligned_cols=84 Identities=18% Similarity=0.123 Sum_probs=50.6
Q ss_pred HHhhcCC-EEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC----CCCH----------H
Q 001044 1040 ILEKVGA-TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP----KMDG----------Y 1104 (1177)
Q Consensus 1040 ~L~~~G~-~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP----~mdG----------~ 1104 (1177)
...++|. ++..+.|.+||..+... .+|+|... || +.-| -
T Consensus 158 ~A~~~gL~Ti~~v~~~eeA~amA~a------------------------gpDiI~~h--~glT~gglIG~~~avs~~~~~ 211 (286)
T 2p10_A 158 EAHKLDLLTTPYVFSPEDAVAMAKA------------------------GADILVCH--MGLTTGGAIGARSGKSMDDCV 211 (286)
T ss_dssp HHHHTTCEECCEECSHHHHHHHHHH------------------------TCSEEEEE--CSCC---------CCCHHHHH
T ss_pred HHHHCCCeEEEecCCHHHHHHHHHc------------------------CCCEEEEC--CCCCCCCcccCCCcccHHHhH
Confidence 3445674 66788999999988753 69999865 55 3333 2
Q ss_pred HHHHHHHhcccccCCCCcceEEEe-cCCCHHHHHHHHHc--CCCEEEEC
Q 001044 1105 EATIEIRKSESEHGARNIPIVALT-AHAMNADEKKCLGV--GMNAYLTK 1150 (1177)
Q Consensus 1105 e~~r~IR~~~~~~~~~~ipIIalT-a~~~~~~~~~~l~a--G~d~yL~K 1150 (1177)
|.++++.+.-... .+++.|+.-. .-+..+|...+++. |+++|+.=
T Consensus 212 e~i~~i~~a~~~v-npdvivLc~gGpIstpeDv~~~l~~t~G~~G~~gA 259 (286)
T 2p10_A 212 SLINECIEAARTI-RDDIIILSHGGPIANPEDARFILDSCQGCHGFYGA 259 (286)
T ss_dssp HHHHHHHHHHHHH-CSCCEEEEESTTCCSHHHHHHHHHHCTTCCEEEES
T ss_pred HHHHHHHHHHHHh-CCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEee
Confidence 3333333321111 1233222222 23789999999999 99999975
No 359
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=26.23 E-value=6e+02 Score=27.29 Aligned_cols=86 Identities=16% Similarity=0.127 Sum_probs=59.3
Q ss_pred HHHHHHhhcCCEE-EEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEE---eCCCCCCCHHHHHHHHH
Q 001044 1036 VACKILEKVGATV-SVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILM---DCQMPKMDGYEATIEIR 1111 (1177)
Q Consensus 1036 ~l~~~L~~~G~~v-~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlm---Di~MP~mdG~e~~r~IR 1111 (1177)
.+...-..+|.++ +.+.|.+|.-.++.. ..++|=. |+.--..| ++.+.+++
T Consensus 144 ~l~~~A~~lGl~~LvEVh~~~El~rAl~~------------------------~a~iIGINNRnL~tf~vd-l~~t~~L~ 198 (258)
T 4a29_A 144 SLLEYARSYGMEPLILINDENDLDIALRI------------------------GARFIGIMSRDFETGEIN-KENQRKLI 198 (258)
T ss_dssp HHHHHHHHTTCCCEEEESSHHHHHHHHHT------------------------TCSEEEECSBCTTTCCBC-HHHHHHHH
T ss_pred HHHHHHHHHhHHHHHhcchHHHHHHHhcC------------------------CCcEEEEeCCCccccccC-HHHHHHHH
Confidence 3444455688765 468999987766642 3566533 12222223 56677777
Q ss_pred hcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEEC
Q 001044 1112 KSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1150 (1177)
Q Consensus 1112 ~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~K 1150 (1177)
..-+ ..+.+|+-++-.+.+|..++.++|+|+||.-
T Consensus 199 ~~ip----~~~~~VsESGI~t~~dv~~l~~~G~~a~LVG 233 (258)
T 4a29_A 199 SMIP----SNVVKVAKLGISERNEIEELRKLGVNAFLIS 233 (258)
T ss_dssp TTSC----TTSEEEEEESSCCHHHHHHHHHTTCCEEEEC
T ss_pred hhCC----CCCEEEEcCCCCCHHHHHHHHHCCCCEEEEC
Confidence 6543 3478899999999999999999999999974
No 360
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=25.93 E-value=50 Score=35.95 Aligned_cols=57 Identities=16% Similarity=0.229 Sum_probs=40.4
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecCC------CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIVALTAHA------MNADEKKCLGVGMNAYLTKPIDSERMVSTILR 1163 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipIIalTa~~------~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~ 1163 (1177)
+.++..+++|+.. .++||++++=.. .+....+|.++|+|+.+.=.+..++....+..
T Consensus 81 ~~~~~v~~ir~~~-----~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~ 143 (267)
T 3vnd_A 81 DCFDIITKVRAQH-----PDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESAPFSKA 143 (267)
T ss_dssp HHHHHHHHHHHHC-----TTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHH
T ss_pred HHHHHHHHHHhcC-----CCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhHHHHHHH
Confidence 3478888888641 358999997422 25567899999999999977777765544433
No 361
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Probab=25.71 E-value=57 Score=35.66 Aligned_cols=58 Identities=16% Similarity=0.301 Sum_probs=43.3
Q ss_pred HHHHHHHHhcccccCCCCcceEEE--ecCCCHHHHHHHHHcCCCEEEE-----CCCCHHHHHHHHHHHhhc
Q 001044 1104 YEATIEIRKSESEHGARNIPIVAL--TAHAMNADEKKCLGVGMNAYLT-----KPIDSERMVSTILRLTKN 1167 (1177)
Q Consensus 1104 ~e~~r~IR~~~~~~~~~~ipIIal--Ta~~~~~~~~~~l~aG~d~yL~-----KP~~~~~L~~~I~~l~~~ 1167 (1177)
|+++++|++. .++|||++ -+-.+.++..++++.|+|+.+. |--++.....++...+..
T Consensus 187 ~elI~~Ike~------~~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI~~s~DP~~~Akafv~Av~~ 251 (291)
T 3o07_A 187 VSLLKDVLEK------GKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNPVRLATAVVEATTH 251 (291)
T ss_dssp HHHHHHHHHH------TSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHc------cCCCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHHhCCCCHHHHHHHHHHHHHh
Confidence 8889999874 35899887 3345789999999999999975 334567777776666543
No 362
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=25.59 E-value=97 Score=32.99 Aligned_cols=55 Identities=15% Similarity=0.127 Sum_probs=39.9
Q ss_pred cc-EEEEeCCCCCCCH---HHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1089 FD-LILMDCQMPKMDG---YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1089 ~D-LIlmDi~MP~mdG---~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
.| +.+.|.......- ++.+++|++. ..+||++..+-.+.++..+++++|+|..+.
T Consensus 44 a~~i~v~d~~~~~~~~g~~~~~i~~i~~~------~~iPvi~~ggi~~~~~i~~~~~~Gad~v~l 102 (266)
T 2w6r_A 44 AGEILLTSIDRDGTKSGYDTEMIRFVRPL------TTLPIIASGGAGKMEHFLEAFLAGADKALA 102 (266)
T ss_dssp CSEEEEEETTTSSCSSCCCHHHHHHHGGG------CCSCEEEESCCCSTHHHHHHHHHTCSEEEC
T ss_pred CCEEEEEecCcccCCCcccHHHHHHHHHh------cCCCEEEECCCCCHHHHHHHHHcCCcHhhh
Confidence 44 4557765432211 7888888753 258999988877788899999999999876
No 363
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=25.49 E-value=1.6e+02 Score=26.44 Aligned_cols=41 Identities=20% Similarity=0.197 Sum_probs=31.9
Q ss_pred EEEEecChHHHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHh
Q 001044 1024 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRM 1064 (1177)
Q Consensus 1024 ILIVdD~~~~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~ 1064 (1177)
.|+-|.+..-.+..++-.+..||+|..+.|.+||+..++..
T Consensus 80 lllqdqdeneleefkrkiesqgyevrkvtddeealkivref 120 (134)
T 2lci_A 80 LLLQDQDENELEEFKRKIESQGYEVRKVTDDEEALKIVREF 120 (134)
T ss_dssp EEEECSCHHHHHHHHHHHHTTTCEEEEECCHHHHHHHHHHH
T ss_pred EEeecCchhHHHHHHHHHHhCCeeeeecCChHHHHHHHHHH
Confidence 34445555556677888888999999999999999988653
No 364
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=25.29 E-value=1.2e+02 Score=33.24 Aligned_cols=32 Identities=13% Similarity=0.109 Sum_probs=20.2
Q ss_pred CCcEEEEEecCh---HHHHHHHHHHhhcCCEEEEE
Q 001044 1020 EGLRILLAEDTP---LIQIVACKILEKVGATVSVV 1051 (1177)
Q Consensus 1020 ~g~~ILIVdD~~---~~~~~l~~~L~~~G~~v~~a 1051 (1177)
.|.+|+++|-++ .....+....++.|..+...
T Consensus 125 ~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~ 159 (297)
T 1j8m_F 125 KGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGE 159 (297)
T ss_dssp TTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECC
T ss_pred CCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEec
Confidence 467899999883 33334444455667777665
No 365
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=25.13 E-value=1.7e+02 Score=30.78 Aligned_cols=101 Identities=15% Similarity=0.140 Sum_probs=61.2
Q ss_pred HHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCH-------HHHHHHHHh
Q 001044 1040 ILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDG-------YEATIEIRK 1112 (1177)
Q Consensus 1040 ~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~mdG-------~e~~r~IR~ 1112 (1177)
.+++.|..+-.+-|...-++.++..+ .....|+|+.=.-=|+-+| ++-++++|+
T Consensus 109 ~i~~~G~k~gvalnp~tp~~~~~~~l-------------------~~g~~D~VlvmsV~pGf~gq~f~~~~l~ki~~lr~ 169 (227)
T 1tqx_A 109 EIRDNNLWCGISIKPKTDVQKLVPIL-------------------DTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRK 169 (227)
T ss_dssp HHHTTTCEEEEEECTTSCGGGGHHHH-------------------TTTCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHH
T ss_pred HHHHcCCeEEEEeCCCCcHHHHHHHh-------------------hcCCcCEEEEeeeccCCCCcccchHHHHHHHHHHH
Confidence 66778988877765443333333221 0014888866555576665 555566665
Q ss_pred cccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEEC-----CCCHHHHHHHHHHHh
Q 001044 1113 SESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK-----PIDSERMVSTILRLT 1165 (1177)
Q Consensus 1113 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~K-----P~~~~~L~~~I~~l~ 1165 (1177)
... +++ |.+.+--..+...+|.++|+|-++.= -=++.+-...+++.+
T Consensus 170 ~~~-----~~~-I~VdGGI~~~ti~~~~~aGAd~~V~GsaIf~~~d~~~~i~~l~~~~ 221 (227)
T 1tqx_A 170 KYK-----NLN-IQVDGGLNIETTEISASHGANIIVAGTSIFNAEDPKYVIDTMRVSV 221 (227)
T ss_dssp HCT-----TCE-EEEESSCCHHHHHHHHHHTCCEEEESHHHHTCSSHHHHHHHHHHHH
T ss_pred hcc-----CCe-EEEECCCCHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHHH
Confidence 431 354 55677778889999999999998753 224544444444433
No 366
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=25.09 E-value=1.5e+02 Score=31.61 Aligned_cols=86 Identities=17% Similarity=0.103 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCC--CCC--------------------HHHHHHHH
Q 001044 1053 DGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP--KMD--------------------GYEATIEI 1110 (1177)
Q Consensus 1053 nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP--~md--------------------G~e~~r~I 1110 (1177)
+-++.++.++...+. ..|.|-+|.-.+ .|| +++.+++|
T Consensus 30 ~~~~~~~~~~~l~~~--------------------Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~i 89 (262)
T 1rd5_A 30 DLATTAEALRLLDGC--------------------GADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREV 89 (262)
T ss_dssp CHHHHHHHHHHHHHT--------------------TCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc--------------------CCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q ss_pred HhcccccCCCCcceEEEecCCCHH--HHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Q 001044 1111 RKSESEHGARNIPIVALTAHAMNA--DEKKCLGVGMNAYLTKPIDSERMVSTILRL 1164 (1177)
Q Consensus 1111 R~~~~~~~~~~ipIIalTa~~~~~--~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1164 (1177)
|+. .++|+++++-..... ...+|.++|+|.++.-....+++...+..+
T Consensus 90 r~~------~~~Pv~~m~~~~~~~~~~~~~a~~aGadgv~v~d~~~~~~~~~~~~~ 139 (262)
T 1rd5_A 90 TPE------LSCPVVLLSYYKPIMFRSLAKMKEAGVHGLIVPDLPYVAAHSLWSEA 139 (262)
T ss_dssp GGG------CSSCEEEECCSHHHHSCCTHHHHHTTCCEEECTTCBTTTHHHHHHHH
T ss_pred Hhc------CCCCEEEEecCcHHHHHHHHHHHHcCCCEEEEcCCChhhHHHHHHHH
No 367
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Probab=24.87 E-value=3.8e+02 Score=30.17 Aligned_cols=58 Identities=14% Similarity=0.098 Sum_probs=42.5
Q ss_pred CccEEEEeCCC-----CCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1088 RFDLILMDCQM-----PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1088 ~~DLIlmDi~M-----P~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
..|.|.+.-.- -....++++.+|++.-. .++|||+-.+-.+..|..+++.+|||....
T Consensus 238 GaD~I~vsn~GG~~~d~~~~~~~~L~~i~~av~----~~ipVia~GGI~~g~Dv~kaLalGA~aV~i 300 (352)
T 3sgz_A 238 NVQGIVVSNHGGRQLDEVSASIDALREVVAAVK----GKIEVYMDGGVRTGTDVLKALALGARCIFL 300 (352)
T ss_dssp TCSEEEECCGGGTSSCSSCCHHHHHHHHHHHHT----TSSEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred CCCEEEEeCCCCCccCCCccHHHHHHHHHHHhC----CCCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 46666653210 12245788888876422 359999999999999999999999999875
No 368
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=24.84 E-value=79 Score=35.27 Aligned_cols=63 Identities=14% Similarity=0.175 Sum_probs=45.2
Q ss_pred HHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCCCCCCC
Q 001044 1105 EATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEATG 1174 (1177)
Q Consensus 1105 e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~~~~~~~ 1174 (1177)
++.++.|+..+ ..||++.... .++..+++++|+|..+.-.+++++|.++++.+-.+..-+++|
T Consensus 220 ~Av~~ar~~~p-----~~kIeVEVdt--ldea~eAl~aGaD~I~LDn~~~~~l~~av~~l~~~v~ieaSG 282 (320)
T 3paj_A 220 QAISTAKQLNP-----GKPVEVETET--LAELEEAISAGADIIMLDNFSLEMMREAVKINAGRAALENSG 282 (320)
T ss_dssp HHHHHHHHHST-----TSCEEEEESS--HHHHHHHHHTTCSEEEEESCCHHHHHHHHHHHTTSSEEEEES
T ss_pred HHHHHHHHhCC-----CCeEEEEECC--HHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhCCCCeEEEEC
Confidence 67777776532 3578776654 367788999999999999999999988887643333334444
No 369
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=24.77 E-value=1.9e+02 Score=27.60 Aligned_cols=69 Identities=14% Similarity=0.184 Sum_probs=46.1
Q ss_pred CccEEEEeCCCCCCCH------------------HHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1088 RFDLILMDCQMPKMDG------------------YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1088 ~~DLIlmDi~MP~mdG------------------~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
.+.+|+.|+.=-..++ .++++++|+. .++++++|+.........+-..|.+.|+.
T Consensus 8 ~~k~v~~DlDGTL~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-------g~~~~i~T~~~~~~~~~~l~~~gl~~~~~ 80 (162)
T 2p9j_A 8 KLKLLIMDIDGVLTDGKLYYTEHGETIKVFNVLDGIGIKLLQKM-------GITLAVISGRDSAPLITRLKELGVEEIYT 80 (162)
T ss_dssp HCCEEEECCTTTTSCSEEEEETTEEEEEEEEHHHHHHHHHHHTT-------TCEEEEEESCCCHHHHHHHHHTTCCEEEE
T ss_pred ceeEEEEecCcceECCceeecCCCceeeeecccHHHHHHHHHHC-------CCEEEEEeCCCcHHHHHHHHHcCCHhhcc
Confidence 3788999987544432 3677777742 37899999988777666777889999986
Q ss_pred CCCCHHHHHHHHHH
Q 001044 1150 KPIDSERMVSTILR 1163 (1177)
Q Consensus 1150 KP~~~~~L~~~I~~ 1163 (1177)
.+-...+....+.+
T Consensus 81 ~~kp~~~~~~~~~~ 94 (162)
T 2p9j_A 81 GSYKKLEIYEKIKE 94 (162)
T ss_dssp CC--CHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH
Confidence 55444444443333
No 370
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=24.76 E-value=94 Score=32.83 Aligned_cols=70 Identities=14% Similarity=0.261 Sum_probs=46.0
Q ss_pred CccEEEEeCCCCCCCH-------HHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE-----CCCCHH
Q 001044 1088 RFDLILMDCQMPKMDG-------YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT-----KPIDSE 1155 (1177)
Q Consensus 1088 ~~DLIlmDi~MP~mdG-------~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~-----KP~~~~ 1155 (1177)
..|+|+...--|+.+| ++-++++|+.. .+++ |.+.+--..+...+|.++|||.++. |.=++.
T Consensus 134 ~~D~Vl~msv~pGf~Gq~f~~~~l~ki~~lr~~~-----~~~~-I~VdGGI~~~t~~~~~~aGAd~~VvGsaIf~a~dp~ 207 (228)
T 3ovp_A 134 QIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQF-----PSLD-IEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPR 207 (228)
T ss_dssp GCSEEEEESSCTTTCSCCCCGGGHHHHHHHHHHC-----TTCE-EEEESSCSTTTHHHHHHHTCCEEEESHHHHTCSCHH
T ss_pred cCCeEEEeeecCCCCCcccCHHHHHHHHHHHHhc-----CCCC-EEEeCCcCHHHHHHHHHcCCCEEEEeHHHhCCCCHH
Confidence 4788887766787776 34455666532 2345 4567777788899999999999875 333555
Q ss_pred HHHHHHHH
Q 001044 1156 RMVSTILR 1163 (1177)
Q Consensus 1156 ~L~~~I~~ 1163 (1177)
+-...+++
T Consensus 208 ~~~~~l~~ 215 (228)
T 3ovp_A 208 SVINLLRN 215 (228)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 54444443
No 371
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=24.69 E-value=5.6e+02 Score=28.31 Aligned_cols=45 Identities=16% Similarity=0.104 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1100 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1100 ~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
+....++++++++.. .++|||+..+-.+.+|..+++.+|||.++.
T Consensus 235 g~~~~~~l~~v~~~~-----~~ipvia~GGI~~~~d~~k~l~~GAd~V~i 279 (349)
T 1p0k_A 235 GISTAASLAEIRSEF-----PASTMIASGGLQDALDVAKAIALGASCTGM 279 (349)
T ss_dssp SCCHHHHHHHHHHHC-----TTSEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred CccHHHHHHHHHHhc-----CCCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 345678888887632 359999999999999999999999999875
No 372
>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.20A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=24.27 E-value=48 Score=32.00 Aligned_cols=23 Identities=4% Similarity=-0.052 Sum_probs=4.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHH
Q 001044 453 ILVIGCICILILTNGVSKEMKLR 475 (1177)
Q Consensus 453 illi~~~~~~~l~~~i~~~~~l~ 475 (1177)
++++++++.+++.+.+.++++..
T Consensus 68 ~~~~~~~~~~~~~~~i~~pl~~l 90 (163)
T 2f95_B 68 LGINLGLVAATLGGDTAASLSTL 90 (163)
T ss_dssp HHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455566666665443
No 373
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=23.23 E-value=94 Score=33.95 Aligned_cols=83 Identities=19% Similarity=0.223 Sum_probs=50.5
Q ss_pred CcEEEEEecC-----hHHHHHHHHHHhhcC-CEEEEEcCHHHH--HHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEE
Q 001044 1021 GLRILLAEDT-----PLIQIVACKILEKVG-ATVSVVPDGLQA--VEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLI 1092 (1177)
Q Consensus 1021 g~~ILIVdD~-----~~~~~~l~~~L~~~G-~~v~~a~nG~eA--l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLI 1092 (1177)
.++|||+.-. +.....+..+|++.| |+|+++.+.... .+.+. ..-..||+|
T Consensus 4 ~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~---------------------~~L~~~D~v 62 (281)
T 4e5v_A 4 PIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFV---------------------LDFSPYQLV 62 (281)
T ss_dssp CEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCC---------------------CCCTTCSEE
T ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHh---------------------hhhhcCCEE
Confidence 4689999762 445578899999888 999999874200 00010 012469999
Q ss_pred EEeCCCCCCCHHHHHHHHHhcccccCCCCcceEEEec
Q 001044 1093 LMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTA 1129 (1177)
Q Consensus 1093 lmDi~MP~mdG~e~~r~IR~~~~~~~~~~ipIIalTa 1129 (1177)
+++..+...+- +..+.|++.-.. ..++|++=+
T Consensus 63 V~~~~~~~l~~-~~~~~l~~yV~~----Ggglv~~H~ 94 (281)
T 4e5v_A 63 VLDYNGDSWPE-ETNRRFLEYVQN----GGGVVIYHA 94 (281)
T ss_dssp EECCCSSCCCH-HHHHHHHHHHHT----TCEEEEEGG
T ss_pred EEeCCCCcCCH-HHHHHHHHHHHc----CCCEEEEec
Confidence 99887766543 233444443222 246777643
No 374
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=22.52 E-value=1.6e+02 Score=31.43 Aligned_cols=105 Identities=14% Similarity=0.237 Sum_probs=60.4
Q ss_pred HHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCCCCCCCH-------HHHHHHHH
Q 001044 1039 KILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDG-------YEATIEIR 1111 (1177)
Q Consensus 1039 ~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~MP~mdG-------~e~~r~IR 1111 (1177)
...++.|..+-.+-|...-++.++..+ ...|+|++=.--|+..| ++-++++|
T Consensus 128 ~~ir~~G~k~Gvalnp~Tp~e~l~~~l---------------------~~vD~VlvMsV~PGfgGQ~fi~~~l~KI~~lr 186 (246)
T 3inp_A 128 QLIKSFGIQAGLALNPATGIDCLKYVE---------------------SNIDRVLIMSVNPGFGGQKFIPAMLDKAKEIS 186 (246)
T ss_dssp HHHHTTTSEEEEEECTTCCSGGGTTTG---------------------GGCSEEEEECSCTTC--CCCCTTHHHHHHHHH
T ss_pred HHHHHcCCeEEEEecCCCCHHHHHHHH---------------------hcCCEEEEeeecCCCCCcccchHHHHHHHHHH
Confidence 334667777766655444444433211 24677764333466665 45566666
Q ss_pred hcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE-----CCCCHHHHHHHHHHHhh
Q 001044 1112 KSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT-----KPIDSERMVSTILRLTK 1166 (1177)
Q Consensus 1112 ~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~-----KP~~~~~L~~~I~~l~~ 1166 (1177)
+.....+ .+++ |.+.+--..+...+|.++|||-++. +-=++++-...+++.++
T Consensus 187 ~~~~~~~-~~~~-I~VDGGI~~~ti~~~~~aGAD~~V~GSaIf~a~dp~~~i~~l~~~i~ 244 (246)
T 3inp_A 187 KWISSTD-RDIL-LEIDGGVNPYNIAEIAVCGVNAFVAGSAIFNSDSYKQTIDKMRDELN 244 (246)
T ss_dssp HHHHHHT-SCCE-EEEESSCCTTTHHHHHTTTCCEEEESHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCee-EEEECCcCHHHHHHHHHcCCCEEEEehHHhCCCCHHHHHHHHHHHHh
Confidence 5432222 2344 5567777788899999999999886 33366655555555443
No 375
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=22.12 E-value=1.2e+02 Score=31.69 Aligned_cols=66 Identities=8% Similarity=0.162 Sum_probs=47.3
Q ss_pred Ccc-EEEEeCCCCCC---CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHc---CCCEEEE------CCCCH
Q 001044 1088 RFD-LILMDCQMPKM---DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV---GMNAYLT------KPIDS 1154 (1177)
Q Consensus 1088 ~~D-LIlmDi~MP~m---dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~a---G~d~yL~------KP~~~ 1154 (1177)
.+| +++++..-..+ -+++.++++++. .++|||+-.+-...++..+++++ |+|.++. .|..+
T Consensus 162 G~~~i~~~~~~~~~~~~g~~~~~~~~l~~~------~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~vG~al~~~~~~~ 235 (244)
T 2y88_A 162 GCSRFVVTDITKDGTLGGPNLDLLAGVADR------TDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKALYARRFTL 235 (244)
T ss_dssp TCCCEEEEETTTTTTTSCCCHHHHHHHHTT------CSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHTTSSCH
T ss_pred CCCEEEEEecCCccccCCCCHHHHHHHHHh------CCCCEEEECCCCCHHHHHHHHhhccCCCCEEEEcHHHHCCCcCH
Confidence 356 55677654322 147888888853 35899999888888999999999 9998764 46665
Q ss_pred HHHHH
Q 001044 1155 ERMVS 1159 (1177)
Q Consensus 1155 ~~L~~ 1159 (1177)
.++.+
T Consensus 236 ~~~~~ 240 (244)
T 2y88_A 236 PQALA 240 (244)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 376
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=22.05 E-value=1.7e+02 Score=32.13 Aligned_cols=60 Identities=10% Similarity=0.024 Sum_probs=47.1
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCC
Q 001044 1088 RFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPI 1152 (1177)
Q Consensus 1088 ~~DLIlmDi~MP~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~ 1152 (1177)
..++|.+|..- .--..+++++||+... ..+||++==+-.+.++..+++++|||..+.--.
T Consensus 199 G~~lV~LD~~~-~~v~~e~V~~I~~~~~----~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGSA 258 (286)
T 3vk5_A 199 GFHMVYLYSRN-EHVPPEVVRHFRKGLG----PDQVLFVSGNVRSGRQVTEYLDSGADYVGFAGA 258 (286)
T ss_dssp TCSEEEEECSS-SCCCHHHHHHHHHHSC----TTCEEEEESSCCSHHHHHHHHHTTCSEEEESGG
T ss_pred CCCEEEEcCCC-CcCCHHHHHHHHHhcC----CCCCEEEEeCCCCHHHHHHHHHcCCCEEEECch
Confidence 46899999865 3334789999997531 158999888888999999999999999997643
No 377
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=21.97 E-value=1.7e+02 Score=32.08 Aligned_cols=94 Identities=14% Similarity=0.075 Sum_probs=48.1
Q ss_pred CCcEEEEEecChH---HHHHHHHHHhhcCCEEEEEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeC
Q 001044 1020 EGLRILLAEDTPL---IQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDC 1096 (1177)
Q Consensus 1020 ~g~~ILIVdD~~~---~~~~l~~~L~~~G~~v~~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi 1096 (1177)
.|.+|++++-++. ..+.+....+..|..+..+.++.+.-..+... ..||+||+|
T Consensus 133 ~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~----------------------~~~dlvIiD- 189 (296)
T 2px0_A 133 KHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF----------------------SEYDHVFVD- 189 (296)
T ss_dssp TCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG----------------------GGSSEEEEE-
T ss_pred cCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh----------------------cCCCEEEEe-
Confidence 4678999988763 22334444455565554455554443333321 369999999
Q ss_pred CCCCCCHH--HHHHHHHhcccccCCCCcceEEEecCCCHHHHHH
Q 001044 1097 QMPKMDGY--EATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1138 (1177)
Q Consensus 1097 ~MP~mdG~--e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~ 1138 (1177)
.|+.+.. .....+++.... ..++-.++++.+.....+..+
T Consensus 190 -T~G~~~~~~~~~~el~~~l~~-~~~~~~~lVl~at~~~~~~~~ 231 (296)
T 2px0_A 190 -TAGRNFKDPQYIDELKETIPF-ESSIQSFLVLSATAKYEDMKH 231 (296)
T ss_dssp -CCCCCTTSHHHHHHHHHHSCC-CTTEEEEEEEETTBCHHHHHH
T ss_pred -CCCCChhhHHHHHHHHHHHhh-cCCCeEEEEEECCCCHHHHHH
Confidence 5666543 333444433211 011222566645444444444
No 378
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=21.76 E-value=3.9e+02 Score=29.79 Aligned_cols=59 Identities=10% Similarity=0.113 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHhcccccCCCCcceEEEecC--CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCC
Q 001044 1101 MDGYEATIEIRKSESEHGARNIPIVALTAH--AMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1169 (1177)
Q Consensus 1101 mdG~e~~r~IR~~~~~~~~~~ipIIalTa~--~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~~ 1169 (1177)
.||-+-++.||+.. -.+|+-... .-...-..+++.|+-|++. .++++...|.++++..+
T Consensus 285 ~DG~~G~~~i~~~g-------g~~~aq~~~~~~~~gMP~~a~~~g~~d~vl---~~~~i~~~l~~~~~~~~ 345 (349)
T 1a2o_A 285 NDGAAGMLAMYQAG-------AWTIAQNEASCVVFGMPREAINMGGVSEVV---DLSQVSQQMLAKISAGQ 345 (349)
T ss_dssp STTHHHHHHHHHHT-------CEEEEECGGGCSCCHHHHHHHTTTCCSEEE---CHHHHHHHHHHHHTSSS
T ss_pred hhHHHHHHHHHHcC-------CEEEEECcccccCcChHHHHHhcCCCcEEE---CHHHHHHHHHHHHhhCc
Confidence 38888888888642 135554321 1134556789999988886 56788888888876543
No 379
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=21.03 E-value=1.8e+02 Score=34.37 Aligned_cols=56 Identities=18% Similarity=0.278 Sum_probs=42.3
Q ss_pred CccEEEEeCCCCCCCH-HHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1088 RFDLILMDCQMPKMDG-YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1088 ~~DLIlmDi~MP~mdG-~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
.+|+|.+|...|...+ .+.+++||+.. +++||++-+ -...+....+.++|+|....
T Consensus 243 G~d~I~id~a~g~~~~~~~~i~~ir~~~-----p~~~Vi~g~-v~t~e~a~~l~~aGaD~I~V 299 (496)
T 4fxs_A 243 GVDVLLIDSSHGHSEGVLQRIRETRAAY-----PHLEIIGGN-VATAEGARALIEAGVSAVKV 299 (496)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHC-----TTCCEEEEE-ECSHHHHHHHHHHTCSEEEE
T ss_pred cCceEEeccccccchHHHHHHHHHHHHC-----CCceEEEcc-cCcHHHHHHHHHhCCCEEEE
Confidence 5999999998876543 57888888752 357888732 34567788899999999986
No 380
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=20.84 E-value=77 Score=35.04 Aligned_cols=63 Identities=14% Similarity=0.119 Sum_probs=44.9
Q ss_pred HHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhcCCCCCCC
Q 001044 1105 EATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEATG 1174 (1177)
Q Consensus 1105 e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~~~~~~~~~~ 1174 (1177)
++.++.|+..+ +.||.+.... .++..+++++|+|..+.-.+++++|.++++.+-.+..-+++|
T Consensus 198 ~Av~~~r~~~p-----~~~ieVEvdt--lde~~eAl~aGaD~I~LDn~~~~~l~~av~~i~~~v~ieaSG 260 (298)
T 3gnn_A 198 EALDAAFALNA-----EVPVQIEVET--LDQLRTALAHGARSVLLDNFTLDMMRDAVRVTEGRAVLEVSG 260 (298)
T ss_dssp HHHHHHHHHC-------CCCEEEESS--HHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHTTSEEEEEES
T ss_pred HHHHHHHHhCC-----CCCEEEEeCC--HHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhCCCCeEEEEc
Confidence 56677776532 3677777543 356788999999999999999999999988774333334444
No 381
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=20.67 E-value=1.3e+02 Score=31.74 Aligned_cols=70 Identities=14% Similarity=0.121 Sum_probs=41.8
Q ss_pred CccEEEEeC---CC-CCC-CHHHHHHHHHhcccccCCCCcceE--EEecCCCHHHHHHHHHcCCCEEEECCC--CHHHHH
Q 001044 1088 RFDLILMDC---QM-PKM-DGYEATIEIRKSESEHGARNIPIV--ALTAHAMNADEKKCLGVGMNAYLTKPI--DSERMV 1158 (1177)
Q Consensus 1088 ~~DLIlmDi---~M-P~m-dG~e~~r~IR~~~~~~~~~~ipII--alTa~~~~~~~~~~l~aG~d~yL~KP~--~~~~L~ 1158 (1177)
..|+|=+|+ .. |.+ .|.+.++.||+.. +.|+. +++.+ -......|.++|+|....-.. ..+...
T Consensus 30 Gad~ihldi~DG~fvp~~~~g~~~v~~lr~~~------~~~~~vhlmv~d-p~~~i~~~~~aGadgv~vh~e~~~~~~~~ 102 (230)
T 1tqj_A 30 GADWIHVDVMDGRFVPNITIGPLIVDAIRPLT------KKTLDVHLMIVE-PEKYVEDFAKAGADIISVHVEHNASPHLH 102 (230)
T ss_dssp TCSEEEEEEEBSSSSSCBCBCHHHHHHHGGGC------CSEEEEEEESSS-GGGTHHHHHHHTCSEEEEECSTTTCTTHH
T ss_pred CCCEEEEEEEecCCCcchhhhHHHHHHHHhhc------CCcEEEEEEccC-HHHHHHHHHHcCCCEEEECcccccchhHH
Confidence 355554444 22 333 3779999999753 24555 66643 234567899999999966555 333444
Q ss_pred HHHHHH
Q 001044 1159 STILRL 1164 (1177)
Q Consensus 1159 ~~I~~l 1164 (1177)
..++.+
T Consensus 103 ~~~~~i 108 (230)
T 1tqj_A 103 RTLCQI 108 (230)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 382
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*
Probab=20.50 E-value=2.8e+02 Score=31.68 Aligned_cols=47 Identities=19% Similarity=0.249 Sum_probs=37.0
Q ss_pred CHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE-CCC
Q 001044 1102 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT-KPI 1152 (1177)
Q Consensus 1102 dG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~-KP~ 1152 (1177)
.-++++.++++.-. ..+|||+-.+-.+..|..+++..|||.... .|+
T Consensus 292 ~~~~~l~~v~~av~----~~ipVia~GGI~~g~Dv~kalalGAd~V~iGr~~ 339 (392)
T 2nzl_A 292 ATIDVLPEIVEAVE----GKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPI 339 (392)
T ss_dssp CHHHHHHHHHHHHT----TSSEEEECSSCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred ChHHHHHHHHHHcC----CCCEEEEECCCCCHHHHHHHHHhCCCeeEECHHH
Confidence 34678888876422 259999999999999999999999999865 444
No 383
>2r6o_A Putative diguanylate cyclase/phosphodiesterase (G domains); ggdef and EAL domains, structural genomics, PSI-2; 1.80A {Thiobacillus denitrificans} PDB: 3ii8_A* 3n3t_A*
Probab=20.27 E-value=1.7e+02 Score=31.89 Aligned_cols=102 Identities=13% Similarity=0.144 Sum_probs=70.0
Q ss_pred HHHHHhhcCCEEE--EEcCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeCC----CCCC-CHHHHHHH
Q 001044 1037 ACKILEKVGATVS--VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ----MPKM-DGYEATIE 1109 (1177)
Q Consensus 1037 l~~~L~~~G~~v~--~a~nG~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLIlmDi~----MP~m-dG~e~~r~ 1109 (1177)
....|++.|+.+. -+..|...+..+.. -++|.|=+|-. +..- ....+++.
T Consensus 168 ~l~~Lr~~G~~ialDDFGtG~ssl~~L~~-----------------------l~~d~iKID~sfv~~i~~~~~~~~iv~~ 224 (294)
T 2r6o_A 168 CLDALRARGVRLALDDFGTGYSSLSYLSQ-----------------------LPFHGLKIDQSFVRKIPAHPSETQIVTT 224 (294)
T ss_dssp HHHHHHHHTCEEEEEEETSSCBCHHHHHH-----------------------SCCCEEEECHHHHTTTTTSHHHHHHHHH
T ss_pred HHHHHHHCCCEEEEECCCCCchhHHHHHh-----------------------CCCCEEEECHHHHhhhhcChHHHHHHHH
Confidence 3455778898754 47788888888865 37999999933 2221 23445555
Q ss_pred HHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCE----EEECCCCHHHHHHHHHHHh
Q 001044 1110 IRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNA----YLTKPIDSERMVSTILRLT 1165 (1177)
Q Consensus 1110 IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~----yL~KP~~~~~L~~~I~~l~ 1165 (1177)
|-..... ..+.|| ..+-.+.++...+.+.|+|. |+.||...+++...+.+.-
T Consensus 225 ii~la~~---lg~~vv-AEGVEt~~q~~~l~~lG~d~~QGy~~~~P~~~~~~~~~l~~~~ 280 (294)
T 2r6o_A 225 ILALARG---LGMEVV-AEGIETAQQYAFLRDRGCEFGQGNLMSTPQAADAFASLLDRQK 280 (294)
T ss_dssp HHHHHHH---TTCEEE-ECCCCSHHHHHHHHHTTCCEECSTTTCCCEEHHHHHHHHHHHH
T ss_pred HHHHHHH---CCCEEE-EecCCcHHHHHHHHHcCCCEEEcCccCCCCCHHHHHHHHHhhh
Confidence 5554332 235554 46777888888899999986 6899999999988776543
No 384
>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae}
Probab=20.13 E-value=94 Score=33.51 Aligned_cols=72 Identities=10% Similarity=0.006 Sum_probs=47.5
Q ss_pred ccEEEEeCCCCCC-CH--HHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHc--CCCEEEE--------CC-CCH
Q 001044 1089 FDLILMDCQMPKM-DG--YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV--GMNAYLT--------KP-IDS 1154 (1177)
Q Consensus 1089 ~DLIlmDi~MP~m-dG--~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~a--G~d~yL~--------KP-~~~ 1154 (1177)
=.++++|+.--+| .| +|+++++++..+. ...+|||+--+-.+.+|..++++. |+++.+. .| +++
T Consensus 172 ~~il~t~i~~dG~~~G~d~eli~~l~~~~~~--~~~iPVIasGGi~s~ed~~~l~~~~~G~~gvivg~al~l~~g~~~~~ 249 (260)
T 2agk_A 172 NEFLIHAADVEGLCGGIDELLVSKLFEWTKD--YDDLKIVYAGGAKSVDDLKLVDELSHGKVDLTFGSSLDIFGGNLVKF 249 (260)
T ss_dssp SEEEEEC-------CCCCHHHHHHHHHHHTT--CSSCEEEEESCCCCTHHHHHHHHHHTTCEEEECCTTBGGGTCSSBCH
T ss_pred CEEEEEeeccccCcCCCCHHHHHHHHHhhcc--cCCceEEEeCCCCCHHHHHHHHHhcCCCCEEEeeCCHHHcCCCCCCH
Confidence 3567778755333 33 7889999865310 015999998888899999999988 9988543 44 777
Q ss_pred HHHHHHHH
Q 001044 1155 ERMVSTIL 1162 (1177)
Q Consensus 1155 ~~L~~~I~ 1162 (1177)
+++.+.++
T Consensus 250 ~~~~~~~~ 257 (260)
T 2agk_A 250 EDCCRWNE 257 (260)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776543
No 385
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*
Probab=20.12 E-value=4.5e+02 Score=29.64 Aligned_cols=58 Identities=16% Similarity=0.158 Sum_probs=42.6
Q ss_pred CccEEEEeC----CCC-CCCHHHHHHHHHhcccccCCCCcceEEEecCCCHHHHHHHHHcCCCEEEE
Q 001044 1088 RFDLILMDC----QMP-KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1149 (1177)
Q Consensus 1088 ~~DLIlmDi----~MP-~mdG~e~~r~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1149 (1177)
..|.|.+.- ++. ...-++++.++++.-. ..+|||+-.+-.+..|..+++..|||.+..
T Consensus 250 Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~~v~----~~ipVia~GGI~~g~D~~kalalGAd~V~i 312 (368)
T 2nli_A 250 GASGIWVSNHGARQLYEAPGSFDTLPAIAERVN----KRVPIVFDSGVRRGEHVAKALASGADVVAL 312 (368)
T ss_dssp TCSEEEECCGGGTSCSSCCCHHHHHHHHHHHHT----TSSCEEECSSCCSHHHHHHHHHTTCSEEEE
T ss_pred CCCEEEEcCCCcCCCCCCCChHHHHHHHHHHhC----CCCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 467666632 111 2234788888886532 259999999999999999999999999876
Done!