Your job contains 1 sequence.
>001045
MDSHPSDKNLTLDSTHLFLSTQSSPPDSLIFPPIPRTFPPSKHVPNTRFLIDAFRYAADF
SVSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLLSQILNINPKFIYPLPIKIPVLIDG
CEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFCKTMLLQPVMNEFAGCDAVFL
DTTYCNPKFLFPLQEESVEYVVNVVNRVGGELNEGLQKRVLFLVATYVIGKEKILIEIFK
KCGRKVCVDSRKMEVLRVLGYGDSGVFTEDESETDVHVVGWNEIMVERGYDKVVGFVPTG
WTYEVKRNKFAVRSKDAFEIHLVPYSEHSNYDELREYVKFLKPKRVIPTVGMDIEKLDSK
HANKMRKYFAGLVDEMASKKEFLMGFHRGTSEIDENVEEGAGSGSNEGLSKEGEVKSKKT
KATEDSSSSILLDSSSRLEEFGSKDVTALDDEETEKMVQEIRNCLPTWVTQNQILDLISS
SGRNIVDAVSNFYEHETQLYEQEYKLPTIKHSIKSTLSPSKRKKTVTNNPKKKGKVPSKM
ESSGAKQPTITSFFNKLLPNMSQGDVVESKSEECPKDENPLQSNAIKTYGEEIDQFLKII
NGNESLKGYAATLLEKTKGNVSMALDLYYDNQEGDRGKTVNRLEFSKSSVQSDSCNKDCS
SALEKIVSEELQHITDMSVQRPSKELMDPTLVSLPPEKYDPIEHACWSSGQPAPYIHLAR
TFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENIELNIGGSLV
TSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQALLAPPPPLLIKDVYSMLCKISVQ
TGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQAVVMNSSLE
FSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMNKGIGFSASTLSMVPGVPIKP
MLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLI
SIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICV
FVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSK
INNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 001045
(1176 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|A8J921 - symbol:CHLREDRAFT_176829 "Predicted pr... 385 6.7e-97 7
UNIPROTKB|F1M624 - symbol:Lig1 "DNA ligase" species:10116... 817 2.0e-81 1
UNIPROTKB|F1M8E6 - symbol:Lig1 "DNA ligase" species:10116... 817 2.0e-81 1
MGI|MGI:101789 - symbol:Lig1 "ligase I, DNA, ATP-dependen... 808 1.8e-80 1
UNIPROTKB|F6URE1 - symbol:LIG1 "DNA ligase" species:9615 ... 788 5.3e-80 2
RGD|621424 - symbol:Lig1 "ligase I, DNA, ATP-dependent" s... 801 1.0e-79 1
UNIPROTKB|B4DTU4 - symbol:LIG1 "DNA ligase" species:9606 ... 799 1.8e-79 1
UNIPROTKB|F5GZ28 - symbol:LIG1 "DNA ligase" species:9606 ... 795 5.4e-79 1
UNIPROTKB|P18858 - symbol:LIG1 "DNA ligase 1" species:960... 795 5.4e-79 1
UNIPROTKB|Q2TB12 - symbol:LIG1 "DNA ligase" species:9606 ... 795 5.4e-79 1
UNIPROTKB|F1RL99 - symbol:LIG1 "DNA ligase" species:9823 ... 794 7.1e-79 1
DICTYBASE|DDB_G0274493 - symbol:lig1 "DNA ligase I" speci... 806 2.4e-78 1
UNIPROTKB|E2QTV4 - symbol:LIG1 "Uncharacterized protein" ... 773 4.0e-78 2
UNIPROTKB|A4IFC8 - symbol:LIG1 "DNA ligase" species:9913 ... 782 1.8e-77 1
UNIPROTKB|H9L3I6 - symbol:LIG1 "Uncharacterized protein" ... 761 4.5e-75 1
TAIR|locus:2199953 - symbol:LIG1 "DNA ligase 1" species:3... 759 7.6e-75 1
UNIPROTKB|Q75CS4 - symbol:ACL155W "DNA ligase" species:28... 734 9.4e-74 2
POMBASE|SPAC20G8.01 - symbol:cdc17 "ATP-dependent DNA lig... 692 1.5e-72 3
UNIPROTKB|Q0IWT4 - symbol:Os10g0489200 "DNA ligase" speci... 703 5.2e-72 3
CGD|CAL0006047 - symbol:orf19.6155 species:5476 "Candida ... 685 8.3e-70 2
ASPGD|ASPL0000077573 - symbol:AN4883 species:162425 "Emer... 692 5.2e-69 2
UNIPROTKB|Q5B3J7 - symbol:AN4883.2 "DNA ligase" species:2... 692 5.2e-69 2
UNIPROTKB|A8JH25 - symbol:LIG1 "DNA ligase" species:3055 ... 704 9.2e-69 1
UNIPROTKB|H9L029 - symbol:LIG1 "Uncharacterized protein" ... 702 1.5e-68 1
POMBASE|SPBC713.06 - symbol:adl1 "DNA ligase (predicted)"... 667 5.1e-68 3
SGD|S000002323 - symbol:CDC9 "DNA ligase found in the nuc... 683 5.3e-68 2
UNIPROTKB|G4NHG0 - symbol:MGG_03854 "DNA ligase" species:... 637 1.7e-65 3
TAIR|locus:2010207 - symbol:AT1G49250 species:3702 "Arabi... 673 2.2e-65 1
FB|FBgn0262619 - symbol:DNA-ligI "DNA ligase I" species:7... 653 3.3e-65 2
UNIPROTKB|Q7RPC6 - symbol:PY01533 "DNA ligase" species:73... 421 3.2e-60 2
WB|WBGene00002985 - symbol:lig-1 species:6239 "Caenorhabd... 600 3.5e-59 2
UNIPROTKB|Q27474 - symbol:lig-1 "DNA ligase 1" species:62... 600 3.5e-59 2
UNIPROTKB|Q5B061 - symbol:AN6069.2 "DNA ligase" species:2... 379 2.8e-57 2
ASPGD|ASPL0000001880 - symbol:AN6069 species:162425 "Emer... 379 3.5e-57 2
GENEDB_PFALCIPARUM|MAL13P1.22 - symbol:MAL13P1.22 "DNA li... 410 6.6e-56 2
UNIPROTKB|Q8IES4 - symbol:PfLigI "DNA ligase" species:363... 410 6.6e-56 2
TAIR|locus:2090832 - symbol:SNM1 "SENSITIVE TO NITROGEN M... 560 3.6e-53 1
RGD|1306156 - symbol:Dclre1a "DNA cross-link repair 1A" s... 534 6.9e-48 1
UNIPROTKB|I3LAK7 - symbol:DCLRE1A "Uncharacterized protei... 527 3.1e-47 1
MGI|MGI:1930042 - symbol:Dclre1a "DNA cross-link repair 1... 525 6.6e-47 1
UNIPROTKB|I3LLR2 - symbol:DCLRE1A "Uncharacterized protei... 533 7.4e-47 2
UNIPROTKB|F1S5H8 - symbol:DCLRE1A "Uncharacterized protei... 533 7.9e-47 2
UNIPROTKB|E1BN11 - symbol:DCLRE1A "Uncharacterized protei... 522 1.5e-46 1
UNIPROTKB|E2QZ29 - symbol:DCLRE1A "Uncharacterized protei... 521 1.9e-46 1
UNIPROTKB|Q6PJP8 - symbol:DCLRE1A "DNA cross-link repair ... 517 5.2e-46 1
UNIPROTKB|G4N7T1 - symbol:MGG_06370 "DNA ligase" species:... 504 1.4e-44 2
UNIPROTKB|Q7S2S0 - symbol:NCU09706 "DNA ligase" species:3... 372 4.2e-44 4
ZFIN|ZDB-GENE-050522-124 - symbol:dclre1a "DNA cross-link... 497 4.9e-44 1
DICTYBASE|DDB_G0277755 - symbol:dclre1 "DNA repair metall... 498 2.1e-43 2
POMBASE|SPAC22A12.01c - symbol:pso2 "DNA 5' exonuclease (... 457 4.1e-42 1
TAIR|locus:2043689 - symbol:AT2G45700 species:3702 "Arabi... 466 4.1e-41 1
FB|FBgn0037338 - symbol:Snm1 "Snm1" species:7227 "Drosoph... 461 2.1e-40 1
UNIPROTKB|Q7RYJ3 - symbol:NCU06481 "DNA ligase" species:3... 461 4.4e-40 2
UNIPROTKB|F1NC75 - symbol:DCLRE1A "DNA cross-link repair ... 458 1.1e-39 1
UNIPROTKB|Q5QJC4 - symbol:DCLRE1A "DNA cross-link repair ... 457 1.5e-39 1
UNIPROTKB|Q8TSR7 - symbol:lig1 "DNA ligase 1" species:188... 260 7.3e-32 2
ZFIN|ZDB-GENE-061013-328 - symbol:dclre1b "DNA cross-link... 364 2.9e-30 1
GENEDB_PFALCIPARUM|PF14_0711 - symbol:PF14_0711 "hypothet... 206 2.9e-28 2
UNIPROTKB|Q8IK95 - symbol:PF14_0711 "DNA repair metallo-b... 206 2.9e-28 2
UNIPROTKB|Q8TMT1 - symbol:lig2 "DNA ligase 2" species:188... 274 2.1e-27 2
ASPGD|ASPL0000068746 - symbol:AN10962 species:162425 "Eme... 252 2.9e-27 3
UNIPROTKB|E2RLH4 - symbol:DCLRE1B "Uncharacterized protei... 322 3.0e-26 1
UNIPROTKB|O67398 - symbol:lig "Probable DNA ligase" speci... 197 2.6e-25 2
UNIPROTKB|Q980T8 - symbol:lig "DNA ligase" species:273057... 319 4.7e-24 2
SGD|S000004745 - symbol:PSO2 "Nuclease required for DNA s... 236 3.8e-23 3
UNIPROTKB|Q9H816 - symbol:DCLRE1B "5' exonuclease Apollo"... 297 3.7e-22 2
TAIR|locus:2015939 - symbol:AT1G27410 "AT1G27410" species... 256 3.8e-22 2
UNIPROTKB|Q5QJC3 - symbol:DCLRE1B "5' exonuclease Apollo"... 286 5.5e-22 1
UNIPROTKB|F1SBR3 - symbol:DCLRE1B "Uncharacterized protei... 287 9.2e-22 1
UNIPROTKB|D2H8V8 - symbol:DCLRE1B "5' exonuclease Apollo"... 286 1.1e-21 1
UNIPROTKB|E1BFI5 - symbol:DCLRE1B "Uncharacterized protei... 283 3.1e-21 2
CGD|CAL0005993 - symbol:orf19.2926 species:5476 "Candida ... 132 3.2e-21 6
UNIPROTKB|F1NF26 - symbol:DCLRE1B "5' exonuclease Apollo"... 274 1.3e-20 1
RGD|1310343 - symbol:Dclre1b "DNA cross-link repair 1B" s... 274 2.5e-20 2
MGI|MGI:2156057 - symbol:Dclre1b "DNA cross-link repair 1... 264 2.7e-19 2
UNIPROTKB|Q0JKB6 - symbol:Os01g0685500 "Os01g0685500 prot... 236 1.7e-18 1
UNIPROTKB|Q24FD9 - symbol:TTHERM_00865240 "DNA ligase" sp... 212 7.6e-18 2
UNIPROTKB|B4E135 - symbol:LIG1 "DNA ligase 1" species:960... 223 4.7e-15 1
UNIPROTKB|Q23RI5 - symbol:TTHERM_00387050 "DNA ligase" sp... 201 1.8e-14 2
UNIPROTKB|Q9FCB1 - symbol:lig "Probable DNA ligase" speci... 169 2.1e-13 2
WB|WBGene00045237 - symbol:mrt-1 species:6239 "Caenorhabd... 197 5.0e-12 2
ZFIN|ZDB-GENE-070820-10 - symbol:lig4 "ligase IV, DNA, AT... 179 7.5e-12 2
UNIPROTKB|Q90YB1 - symbol:LIG4 "DNA ligase 4" species:903... 186 1.9e-11 2
UNIPROTKB|Q5QJC2 - symbol:DCLRE1C "Protein artemis" speci... 175 1.9e-11 3
UNIPROTKB|F1NW11 - symbol:DCLRE1C "Protein artemis" speci... 174 2.4e-11 3
UNIPROTKB|F1P275 - symbol:LIG4 "DNA ligase" species:9031 ... 184 3.1e-11 2
RGD|1304639 - symbol:Lig4 "ligase IV, DNA, ATP-dependent"... 167 5.5e-11 2
UNIPROTKB|P95096 - symbol:lig "Probable DNA ligase" speci... 147 6.5e-11 2
UNIPROTKB|E2RNT6 - symbol:LIG3 "DNA ligase" species:9615 ... 193 1.0e-10 2
TAIR|locus:2167175 - symbol:AT5G17360 "AT5G17360" species... 163 1.1e-10 1
UNIPROTKB|J9P597 - symbol:LIG3 "DNA ligase" species:9615 ... 193 1.1e-10 2
MGI|MGI:109152 - symbol:Lig3 "ligase III, DNA, ATP-depend... 189 1.3e-10 2
RGD|1309875 - symbol:Lig3 "ligase III, DNA, ATP-dependent... 189 1.7e-10 2
UNIPROTKB|Q5R6L3 - symbol:DNL4 "DNA ligase 4" species:960... 174 1.7e-10 2
UNIPROTKB|D4A2K2 - symbol:Lig3 "DNA ligase" species:10116... 189 1.8e-10 2
UNIPROTKB|D4A837 - symbol:Lig3 "DNA ligase" species:10116... 189 2.1e-10 2
DICTYBASE|DDB_G0283857 - symbol:lig3 "DNA ligase III" spe... 195 2.3e-10 2
UNIPROTKB|F1MQY1 - symbol:LIG3 "DNA ligase" species:9913 ... 190 4.4e-10 2
UNIPROTKB|P49917 - symbol:LIG4 "DNA ligase 4" species:960... 171 4.6e-10 2
RGD|708574 - symbol:Dclre1c "DNA cross-link repair 1C" sp... 160 5.4e-10 3
WARNING: Descriptions of 23 database sequences were not reported due to the
limiting value of parameter V = 100.
>UNIPROTKB|A8J921 [details] [associations]
symbol:CHLREDRAFT_176829 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0003910 "DNA ligase (ATP) activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0005694
"chromosome" evidence=IBA] [GO:0006266 "DNA ligation" evidence=IBA]
[GO:0006273 "lagging strand elongation" evidence=IBA] [GO:0006289
"nucleotide-excision repair" evidence=IBA] InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS50160 GO:GO:0005524 GO:GO:0005634
GO:GO:0005694 GO:GO:0003677 GO:GO:0006310 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006289 eggNOG:COG1236
KO:K15340 InterPro:IPR011084 Pfam:PF07522 GO:GO:0006273
GO:GO:0003910 Gene3D:1.10.3260.10 SUPFAM:SSF117018 EMBL:DS496145
RefSeq:XP_001698007.1 ProteinModelPortal:A8J921
EnsemblPlants:EDO99592 GeneID:5723644 KEGG:cre:CHLREDRAFT_176829
Uniprot:A8J921
Length = 1384
Score = 385 (140.6 bits), Expect = 6.7e-97, Sum P(7) = 6.7e-97
Identities = 87/275 (31%), Positives = 152/275 (55%)
Query: 708 SSGQ-PAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPD---DVLPAVYLCTNK 763
+SG+ P PY+H+A + + ++ L NMFRS+LA + D D++ A+YL T +
Sbjct: 611 ASGRGPTPYLHVALCLSALSSTTKRLAISDALTNMFRSVLAAADDPGRDLVAALYLVTGR 670
Query: 764 IASNHENIELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQXXXXXXX 823
IA ++ ELN+GG+ V+ A++ A G + ++++ +Y GDLGDVA CR+TQ
Sbjct: 671 IAPEYDKTELNVGGATVSGALQAATGASAARLKQLYREHGDLGDVAAACRRTQSTLRNPA 730
Query: 824 XXXIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMR 883
+ + L ++ G G AR++++++ L+ +CR+ E++FLVRTL+ NLR+GA R
Sbjct: 731 PLLCGRLLAALRDVAADKGQGVAARRQAVVLGLLRACRDVEVRFLVRTLISNLRVGANWR 790
Query: 884 TILPALAQAVVMN----SSLEFSHEGKMENLK------EKLQSLSAAAVEAYNXXXXXXX 933
++L L +AV+++ +++ + +G +L++ AA +EAY+
Sbjct: 791 SVLAPLGRAVLLHQRATAAVAAAADGSATTAAVQSPAPAELEAAGAAVLEAYHTCPNFEI 850
Query: 934 XXXXXMNKGIGFSASTLSMVPGVPIKPMLAKITNG 968
+ GI + + GVP+KPMLA G
Sbjct: 851 LVPVLLRHGIEGLRTRCGLTLGVPLKPMLANACAG 885
Score = 298 (110.0 bits), Expect = 6.7e-97, Sum P(7) = 6.7e-97
Identities = 57/114 (50%), Positives = 78/114 (68%)
Query: 37 TFPPSKHVPNT--RFLIDAFRYAADFSVSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSR 94
T P K +P T +DAFRYA +YFL+H HSDHYTGLS +W G ++CSE+T+R
Sbjct: 34 TVPAHKVIPGTGGAVTVDAFRYAHPGVKAYFLTHAHSDHYTGLSEAWCAGPVYCSELTAR 93
Query: 95 LLSQILNINPKFIYPLPIKIPVLIDGC-EVVLVGANHCPGAVQFLFKVPGRNGG 147
L++ + ++ ++ PLP+ PV+++G EV LV ANHCPGAVQ LF+V R GG
Sbjct: 94 LVAHLTGVSTAWLRPLPLGRPVVVEGLVEVTLVDANHCPGAVQLLFRVLPRGGG 147
Score = 251 (93.4 bits), Expect = 6.7e-97, Sum P(7) = 6.7e-97
Identities = 66/165 (40%), Positives = 90/165 (54%)
Query: 246 VCVDSRKMEVLRVLGYGDSGVFTEDESETDVHVVGWNEIMVERGYDKVVGFVPTGWTYEV 305
V D + V+G+G G V++ EIM G VVGFVPTGWTYE+
Sbjct: 284 VFTDDPAASPVHVVGWGTLGETWPYFRPNFVNMQRAAEIM---GARCVVGFVPTGWTYEM 340
Query: 306 KRNKFAVRSKDAFEIHLVPYSEHSNYDELREYVKFLKPKRVIPTVGMDIEKLDSKHANKM 365
KR+ F+V SK A +HLVPYSEHS+Y EL EYVK+L+P++VIPTVG+ K + +
Sbjct: 341 KRSVFSVHSKGALSVHLVPYSEHSSYPELLEYVKWLRPRQVIPTVGV---KEGDREGERA 397
Query: 366 RKYFAGLVDEMASKKEFLMGFHRGTSE-IDENVEEGAGSGSNEGL 409
R A ++ S +G +E E GAG+G+ G+
Sbjct: 398 R---AAMLARFRSLARPAQQRGQGKAEPFPEEAGVGAGTGAAAGV 439
Score = 135 (52.6 bits), Expect = 6.7e-97, Sum P(7) = 6.7e-97
Identities = 24/48 (50%), Positives = 29/48 (60%)
Query: 147 GFERYVHTGDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQ 194
G RY+H GD R+ M P + + GC+ VFLDTTYC PK FP Q
Sbjct: 186 GAVRYLHCGDMRYSPAMQSWPQLGAWRGCEGVFLDTTYCQPKHTFPTQ 233
Score = 81 (33.6 bits), Expect = 6.7e-97, Sum P(7) = 6.7e-97
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 1074 VKVDICVFVFDIMFANGEQLLGYTLRQRRKYL 1105
V V +CVFVFD++ NG LL LR+RR L
Sbjct: 927 VTVQVCVFVFDLLEWNGTSLLHRPLRERRSLL 958
Score = 76 (31.8 bits), Expect = 6.7e-97, Sum P(7) = 6.7e-97
Identities = 12/36 (33%), Positives = 25/36 (69%)
Query: 1141 INNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
+ + L ++ ++ EG+++K LD + Y PS+RS++W
Sbjct: 1085 VMDMLLQSFNTGAEGLMLKRLDGASAYEPSRRSEAW 1120
Score = 75 (31.5 bits), Expect = 9.9e-79, Sum P(7) = 9.9e-79
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 237 EIFKKCGRKVCVDSRKMEVLRVL------GYGDSGV------FTEDESETDVHVVGWNEI 284
+I ++ G ++ V S K++VLR+L D+GV FT+D + + VHVVGW +
Sbjct: 243 QIHERTGLRIHVSSTKLDVLRLLLPPEPNPDPDAGVAAAAHVFTDDPAASPVHVVGWGTL 302
Score = 70 (29.7 bits), Expect = 6.7e-97, Sum P(7) = 6.7e-97
Identities = 10/14 (71%), Positives = 12/14 (85%)
Query: 694 LPPEKYDPIEHACW 707
LP E+YDP+ HACW
Sbjct: 571 LPLERYDPVRHACW 584
>UNIPROTKB|F1M624 [details] [associations]
symbol:Lig1 "DNA ligase" species:10116 "Rattus norvegicus"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003910 "DNA ligase
(ATP) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0051103 "DNA
ligation involved in DNA repair" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 RGD:621424
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 GeneTree:ENSGT00700000104556 IPI:IPI00950231
Ensembl:ENSRNOT00000019799 ArrayExpress:F1M624 Uniprot:F1M624
Length = 912
Score = 817 (292.7 bits), Expect = 2.0e-81, P = 2.0e-81
Identities = 218/689 (31%), Positives = 347/689 (50%)
Query: 501 EQEYKLPTIKHSIKSTLSPSKRKKTVTNNPKKKGKVPSKMESSGAKQPTITSFFNKLLPN 560
E E + P ++ +S SK+ + + + PS M+ S + P + K LP
Sbjct: 69 EDEDEAPGTPQ-VQKPVSDSKQSSPPSPDSCPENSSPS-MDISPSGFPKRRTA-RKQLPK 125
Query: 561 MSQGDVVESKSEECPKDENPLQSNAIKTYGEEIDQFLKIINGNESLKGYAATLLEKTKGN 620
+ D +E +E+ K + +T E + + ++ E ++ E T+
Sbjct: 126 RTIQDTLEEHNEDKDKAAKKRKKEDTQTPTESLTEAEEVKQKEEQVEDQPTVPPEPTESP 185
Query: 621 VSMALDLYYDN----QEGDRGKTVNRLEFSKSSVQSDSCNKDCSSALEKIVSEEL-QHIT 675
S+ L +N + G + K E SK + + + V E+ Q +
Sbjct: 186 ESVTLTKT-ENIPMCKAGVKQKPQEE-EQSKPPARGAKPLSSFFTPRKPAVKTEVKQEES 243
Query: 676 DMSVQRPSKELMDPTLVSLPPEKYDPIEHACWSSGQPAPYIHLARTFDLVEAERGKIKAM 735
D + +K DPT + Y PIE ACW GQ P++ +ARTF+ +E ++K +
Sbjct: 244 DTPRKEETKGAPDPTNYNPSKSNYHPIEDACWKHGQKVPFLAVARTFEKIEEVSARLKMV 303
Query: 736 SMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEACGTNRSKI 795
L N+ RS++ALSP D+LP +YL N++ + +EL +G ++ A+ +A G I
Sbjct: 304 ETLSNLLRSVVALSPTDLLPVLYLSLNRLGPPQQGLELGVGDGVLLKAVAQATGRQLESI 363
Query: 796 RDMYNRLGDLGDVAQECRQTQXXXXXXXXXXIKDVYSMLCKISVQTGSGSTARKKSLIVN 855
R GD+G VA+ R TQ + V++ C I+ TGS S ++K +I
Sbjct: 364 RAEVAEKGDVGLVAENSRSTQRLMLPPPPLTVSGVFTKFCDIARLTGSASMSKKMDIIKG 423
Query: 856 LMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQAVVMNS-SLEF------SHEGKM- 907
L +CR E +F+ R+L LR+G +++L ALAQAV + EF + +GK
Sbjct: 424 LFVACRYSEARFIARSLSGRLRLGLAEQSVLAALAQAVSLTPPGQEFPTAVVDAGKGKTA 483
Query: 908 ENLKEKLQSLSAAAVEAYNXXXXXXXXXXXXMNKGIGFSASTLSMVPGVPIKPMLAKITN 967
E K L+ + + + G+ + PGVP+KPMLA T
Sbjct: 484 EARKMWLEEQGMILKQTFCEVPDLDRIIPVLLEHGLESLPEHCKLSPGVPLKPMLAHPTR 543
Query: 968 GVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFC 1027
GV +VLK F+ FTCEYKYDGQRAQIH L G V+IFSRN ++ + ++PD+IS I +
Sbjct: 544 GVREVLKRFEEVDFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNSGKYPDIISRIPKIK 603
Query: 1028 KPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMF 1087
P+ +FILD E VA DR+ +I FQ L++R+R D+ ++V +C++ FD+++
Sbjct: 604 HPSVTSFILDTEAVAWDREKK-QIQPFQVLTTRKRKEVDA----SEIQVQVCLYAFDLIY 658
Query: 1088 ANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEE 1147
NGE L L +RR+ L++ F + + G F +A + T D+ +I FLE+
Sbjct: 659 LNGESLARQPLSRRRQLLRENFVETE-GEFVFATSLD--------TKDIE--QIAEFLEQ 707
Query: 1148 ALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
++ SCEG++VK+LDVDA Y +KRS +W
Sbjct: 708 SVKDSCEGLMVKTLDVDATYEIAKRSHNW 736
>UNIPROTKB|F1M8E6 [details] [associations]
symbol:Lig1 "DNA ligase" species:10116 "Rattus norvegicus"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003910 "DNA ligase
(ATP) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0051103 "DNA
ligation involved in DNA repair" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 RGD:621424
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 IPI:IPI00553920 Ensembl:ENSRNOT00000064178
ArrayExpress:F1M8E6 Uniprot:F1M8E6
Length = 913
Score = 817 (292.7 bits), Expect = 2.0e-81, P = 2.0e-81
Identities = 218/689 (31%), Positives = 347/689 (50%)
Query: 501 EQEYKLPTIKHSIKSTLSPSKRKKTVTNNPKKKGKVPSKMESSGAKQPTITSFFNKLLPN 560
E E + P ++ +S SK+ + + + PS M+ S + P + K LP
Sbjct: 70 EDEDEAPGTPQ-VQKPVSDSKQSSPPSPDSCPENSSPS-MDISPSGFPKRRTA-RKQLPK 126
Query: 561 MSQGDVVESKSEECPKDENPLQSNAIKTYGEEIDQFLKIINGNESLKGYAATLLEKTKGN 620
+ D +E +E+ K + +T E + + ++ E ++ E T+
Sbjct: 127 RTIQDTLEEHNEDKDKAAKKRKKEDTQTPTESLTEAEEVKQKEEQVEDQPTVPPEPTESP 186
Query: 621 VSMALDLYYDN----QEGDRGKTVNRLEFSKSSVQSDSCNKDCSSALEKIVSEEL-QHIT 675
S+ L +N + G + K E SK + + + V E+ Q +
Sbjct: 187 ESVTLTKT-ENIPMCKAGVKQKPQEE-EQSKPPARGAKPLSSFFTPRKPAVKTEVKQEES 244
Query: 676 DMSVQRPSKELMDPTLVSLPPEKYDPIEHACWSSGQPAPYIHLARTFDLVEAERGKIKAM 735
D + +K DPT + Y PIE ACW GQ P++ +ARTF+ +E ++K +
Sbjct: 245 DTPRKEETKGAPDPTNYNPSKSNYHPIEDACWKHGQKVPFLAVARTFEKIEEVSARLKMV 304
Query: 736 SMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEACGTNRSKI 795
L N+ RS++ALSP D+LP +YL N++ + +EL +G ++ A+ +A G I
Sbjct: 305 ETLSNLLRSVVALSPTDLLPVLYLSLNRLGPPQQGLELGVGDGVLLKAVAQATGRQLESI 364
Query: 796 RDMYNRLGDLGDVAQECRQTQXXXXXXXXXXIKDVYSMLCKISVQTGSGSTARKKSLIVN 855
R GD+G VA+ R TQ + V++ C I+ TGS S ++K +I
Sbjct: 365 RAEVAEKGDVGLVAENSRSTQRLMLPPPPLTVSGVFTKFCDIARLTGSASMSKKMDIIKG 424
Query: 856 LMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQAVVMNS-SLEF------SHEGKM- 907
L +CR E +F+ R+L LR+G +++L ALAQAV + EF + +GK
Sbjct: 425 LFVACRYSEARFIARSLSGRLRLGLAEQSVLAALAQAVSLTPPGQEFPTAVVDAGKGKTA 484
Query: 908 ENLKEKLQSLSAAAVEAYNXXXXXXXXXXXXMNKGIGFSASTLSMVPGVPIKPMLAKITN 967
E K L+ + + + G+ + PGVP+KPMLA T
Sbjct: 485 EARKMWLEEQGMILKQTFCEVPDLDRIIPVLLEHGLESLPEHCKLSPGVPLKPMLAHPTR 544
Query: 968 GVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFC 1027
GV +VLK F+ FTCEYKYDGQRAQIH L G V+IFSRN ++ + ++PD+IS I +
Sbjct: 545 GVREVLKRFEEVDFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNSGKYPDIISRIPKIK 604
Query: 1028 KPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMF 1087
P+ +FILD E VA DR+ +I FQ L++R+R D+ ++V +C++ FD+++
Sbjct: 605 HPSVTSFILDTEAVAWDREKK-QIQPFQVLTTRKRKEVDA----SEIQVQVCLYAFDLIY 659
Query: 1088 ANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEE 1147
NGE L L +RR+ L++ F + + G F +A + T D+ +I FLE+
Sbjct: 660 LNGESLARQPLSRRRQLLRENFVETE-GEFVFATSLD--------TKDIE--QIAEFLEQ 708
Query: 1148 ALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
++ SCEG++VK+LDVDA Y +KRS +W
Sbjct: 709 SVKDSCEGLMVKTLDVDATYEIAKRSHNW 737
>MGI|MGI:101789 [details] [associations]
symbol:Lig1 "ligase I, DNA, ATP-dependent" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003909 "DNA ligase
activity" evidence=ISO] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IBA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IBA;IDA] [GO:0005694 "chromosome"
evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA] [GO:0006260
"DNA replication" evidence=IMP] [GO:0006266 "DNA ligation"
evidence=IBA] [GO:0006273 "lagging strand elongation" evidence=IBA]
[GO:0006281 "DNA repair" evidence=ISO;IMP] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IMP] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0016874 "ligase
activity" evidence=IEA] [GO:0042542 "response to hydrogen peroxide"
evidence=IMP] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051103 "DNA ligation involved in DNA repair" evidence=IEA]
[GO:0051301 "cell division" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 MGI:MGI:101789
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0051301 GO:GO:0046872 GO:GO:0003677 GO:GO:0007049
GO:GO:0006310 GO:GO:0042542 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0006303 GO:GO:0006273 eggNOG:COG1793
KO:K10747 GO:GO:0003910 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 CTD:3978 HOVERGEN:HBG005514 EMBL:U04674
EMBL:U19604 IPI:IPI00473314 PIR:I48921 RefSeq:NP_034845.2
UniGene:Mm.288179 UniGene:Mm.421129 ProteinModelPortal:P37913
SMR:P37913 STRING:P37913 PhosphoSite:P37913 PaxDb:P37913
PRIDE:P37913 GeneID:16881 KEGG:mmu:16881 InParanoid:P37913
NextBio:290882 CleanEx:MM_LIG1 Genevestigator:P37913
GermOnline:ENSMUSG00000056394 Uniprot:P37913
Length = 916
Score = 808 (289.5 bits), Expect = 1.8e-80, P = 1.8e-80
Identities = 210/616 (34%), Positives = 320/616 (51%)
Query: 570 KSEECPKDENPLQSNAIKTYGE-EIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLY 628
K EE PK E+ ++ IK E E DQ +I +E K + L KT+ +
Sbjct: 153 KEEETPK-ESLAEAEDIKQKEEKEGDQ---LIVPSEPTKSPESVTLTKTENIPVCKAGVK 208
Query: 629 YDNQEGDRGKTVNRLEFSKSSVQSDSCNKDCSSALEKIVSEELQHITDMSVQRPSKELMD 688
QE ++ K R + SS + K + +E Q + + +K +D
Sbjct: 209 LKPQEEEQSKPPARGAKTLSSFFTP--RKPA------VKTEVKQEESGTLRKEETKGTLD 260
Query: 689 PTLVSLPPEKYDPIEHACWSSGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLAL 748
P + Y PIE ACW GQ P++ +ARTF+ +E ++K + L N+ RS++AL
Sbjct: 261 PANYNPSKNNYHPIEDACWKHGQKVPFLAVARTFEKIEEVSARLKMVETLSNLLRSVVAL 320
Query: 749 SPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDV 808
SP D+LP +YL N++ + +EL +G ++ A+ +A G IR GD+G V
Sbjct: 321 SPPDLLPVLYLSLNRLGPPQQGLELGVGDGVLLKAVAQATGRQLESIRAEVAEKGDVGLV 380
Query: 809 AQECRQTQXXXXXXXXXXIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFL 868
A+ R TQ I V++ C I+ TGS S A+K +I L +CR E +++
Sbjct: 381 AENSRSTQRLMLPPPPLTISGVFTKFCDIARLTGSASMAKKMDIIKGLFVACRHSEARYI 440
Query: 869 VRTLVRNLRIGAMMRTILPALAQAVVMNS-SLEF------SHEGKM-ENLKEKLQSLSAA 920
R+L LR+G +++L ALAQAV + EF + +GK E K L+
Sbjct: 441 ARSLSGRLRLGLAEQSVLAALAQAVSLTPPGQEFPTVVVDAGKGKTAEARKMWLEEQGMI 500
Query: 921 AVEAYNXXXXXXXXXXXXMNKGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKA 980
+ + + G+ + PGVP+KPMLA T GV +VLK F+
Sbjct: 501 LKQTFCEVPDLDRIIPVLLEHGLERLPEHCKLSPGVPLKPMLAHPTRGVSEVLKRFEEVD 560
Query: 981 FTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILDAEV 1040
FTCEYKYDGQRAQIH L G V+IFSRN ++ T ++PD+IS I + P+ +FILD E
Sbjct: 561 FTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGKYPDIISRIPKIKHPSVTSFILDTEA 620
Query: 1041 VAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQ 1100
VA DR+ +I FQ L++R+R D+ ++V +C++ FD+++ NGE L+ L +
Sbjct: 621 VAWDREKK-QIQPFQVLTTRKRKEVDA----SEIQVQVCLYAFDLIYLNGESLVRQPLSR 675
Query: 1101 RRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKS 1160
RR+ L++ F + + G F + + T D +I FLE+++ SCEG++VK+
Sbjct: 676 RRQLLRENFVETE-GEFVFTTSLD--------TKDTE--QIAEFLEQSVKDSCEGLMVKT 724
Query: 1161 LDVDAGYSPSKRSDSW 1176
LDVDA Y +KRS +W
Sbjct: 725 LDVDATYEIAKRSHNW 740
>UNIPROTKB|F6URE1 [details] [associations]
symbol:LIG1 "DNA ligase" species:9615 "Canis lupus
familiaris" [GO:0003910 "DNA ligase (ATP) activity" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0051103 "DNA ligation involved in DNA repair" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0006310 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 OMA:AQVACLY GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 GeneTree:ENSGT00700000104556
Ensembl:ENSCAFT00000006495 EMBL:AAEX03000828 Uniprot:F6URE1
Length = 911
Score = 788 (282.4 bits), Expect = 5.3e-80, Sum P(2) = 5.3e-80
Identities = 181/505 (35%), Positives = 275/505 (54%)
Query: 680 QRPSKELMDPTLVSLPPEKYDPIEHACWSSGQPAPYIHLARTFDLVEAERGKIKAMSMLC 739
Q +K +DP + Y PI+ ACW GQ PY+ +ARTF+ +E +++ + L
Sbjct: 247 QEETKGPLDPPSYNPAKNNYHPIDDACWKPGQKVPYLAVARTFEKIEEVSARLRMVETLS 306
Query: 740 NMFRSLLALSPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEACGTNRSKIRDMY 799
N+ RS++ALSP D+LP +YL N++ + +EL +G ++ A+ +A G ++
Sbjct: 307 NLLRSVVALSPPDLLPILYLSLNRLGPPQQGLELGVGDGVLLKAVAQATGRQLDSVKAEA 366
Query: 800 NRLGDLGDVAQECRQTQXXXXXXXXXXIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCS 859
GD+G VA+ R TQ V++ I+ GS STA+K +I L +
Sbjct: 367 AEKGDVGLVAENSRSTQRLMLPPPALTAAGVFAKFRDIARLAGSASTAKKIDVIKGLFVA 426
Query: 860 CREKEMKFLVRTLVRNLRIGAMMRTILPALAQAVVMNS-SLEFS----HEGK---MENLK 911
CR E +F+ R L LR+G +++L ALAQAV + EF GK E K
Sbjct: 427 CRHSEARFIARALSGRLRLGLAEQSVLAALAQAVSLTPPGQEFPPAVVDAGKGRTAEARK 486
Query: 912 EKLQSLSAAAVEAYNXXXXXXXXXXXXMNKGIGFSASTLSMVPGVPIKPMLAKITNGVPQ 971
L+ + + + G+ + PGVP+KPMLA T GV +
Sbjct: 487 TWLEEQGMILKQTFCEVPDLDRIIPVLLEHGLEHLPEHCRLSPGVPLKPMLAHPTRGVSE 546
Query: 972 VLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAA 1031
VLK F+ AFTCEYKYDGQRAQIH L G V+IFSRN ++ T ++PD+IS I + P+
Sbjct: 547 VLKRFEEAAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGKYPDIISRIPKIKLPSV 606
Query: 1032 GTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGE 1091
+FILD E VA DR+ +I FQ L++R+R D+ ++V +C++ FD+++ NGE
Sbjct: 607 TSFILDTEAVAWDREKK-QIQPFQVLTTRKRKEVDAA----EIQVQVCLYAFDLIYLNGE 661
Query: 1092 QLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHS 1151
L+ L +RR+ L++ F + + G F +A + + D +I FLE+++
Sbjct: 662 SLVREPLSRRRQLLRENFVETE-GEFVFATSLDTKDTD----------QIAEFLEQSVKD 710
Query: 1152 SCEGIIVKSLDVDAGYSPSKRSDSW 1176
SCEG++VK+LDVDA Y +KRS +W
Sbjct: 711 SCEGLMVKTLDVDATYEIAKRSHNW 735
Score = 38 (18.4 bits), Expect = 5.3e-80, Sum P(2) = 5.3e-80
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 24 SPPDSLIFPPIPRTFPPS 41
+P + PP P T+P S
Sbjct: 84 APGSPQVSPPSPVTYPES 101
>RGD|621424 [details] [associations]
symbol:Lig1 "ligase I, DNA, ATP-dependent" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003909
"DNA ligase activity" evidence=ISO;IDA] [GO:0003910 "DNA ligase
(ATP) activity" evidence=IBA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005694
"chromosome" evidence=IBA] [GO:0005739 "mitochondrion"
evidence=IBA] [GO:0006260 "DNA replication" evidence=ISO]
[GO:0006273 "lagging strand elongation" evidence=IBA] [GO:0006281
"DNA repair" evidence=ISO;IDA] [GO:0006289 "nucleotide-excision
repair" evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=ISO] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0042542 "response to hydrogen peroxide" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051103 "DNA
ligation involved in DNA repair" evidence=IEA] [GO:0051301 "cell
division" evidence=IEA] [GO:0033151 "V(D)J recombination"
evidence=ISO] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 RGD:621424 GO:GO:0005739
GO:GO:0005524 GO:GO:0005634 GO:GO:0005694 GO:GO:0051301
GO:GO:0046872 GO:GO:0003677 GO:GO:0006281 GO:GO:0007049
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0006273 eggNOG:COG1793 HOGENOM:HOG000036006 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 HOVERGEN:HBG005514 OrthoDB:EOG4RBQJ6
EMBL:AF276774 IPI:IPI00200072 UniGene:Rn.20467
ProteinModelPortal:Q9JHY8 SMR:Q9JHY8 STRING:Q9JHY8
PhosphoSite:Q9JHY8 PRIDE:Q9JHY8 UCSC:RGD:621424 InParanoid:Q9JHY8
NextBio:614997 ArrayExpress:Q9JHY8 Genevestigator:Q9JHY8
GermOnline:ENSRNOG00000014193 Uniprot:Q9JHY8
Length = 918
Score = 801 (287.0 bits), Expect = 1.0e-79, P = 1.0e-79
Identities = 221/713 (30%), Positives = 348/713 (48%)
Query: 478 ISSSGRNIVDAVSNFYEHETQLYEQEYKLPTIKHSIKSTLSPSKRKKTVTNNPKKKGKVP 537
+ GR + +S+ E E + + S +S SP N+P
Sbjct: 54 VKRPGRKVAQVLSSEGEDEDEAPGTPQVQKPVSDSKQS--SPPSPDSCPENSPVFNCSPS 111
Query: 538 SKMESSG-AKQPTITSFFNKLLPNMSQGDVVESKSEECPKDENPLQSNAIKTYGEEIDQF 596
+ SG K+ T K LP + D +E +E+ K + +T E + +
Sbjct: 112 MDISPSGFPKRRTA----RKQLPKRTIQDTLEEPNEDKAKAVKKRKKEDPQTPPESLTEA 167
Query: 597 LKIINGNESLKGYAATLLEKTKGNVSMALDLYYDN----QEGDRGKTVNRLEFSKSSVQS 652
++ E ++ E T+ S+ L +N + G + K E SK +
Sbjct: 168 EEVNQKEEQVEDQPTVPPEPTESPESVTLTKT-ENIPMCKAGVKQKPQEE-EQSKPPARG 225
Query: 653 DSCNKDCSSALEKIVSEEL-QHITDMSVQRPSKELMDPTLVSLPPEKYDPIEHACWSSGQ 711
+ + V E+ Q +D + +K DPT + Y PIE ACW GQ
Sbjct: 226 AKPLSSFFTPRKPAVKTEVKQEESDTPRKEETKGAPDPTNYNPSKSNYHPIEDACWKHGQ 285
Query: 712 PAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENI 771
P++ +ARTF+ +E ++K + L N+ RS++ALSP D+LP +YL N++ + +
Sbjct: 286 KVPFLAVARTFEKIEEVSARLKMVETLSNLLRSVVALSPTDLLPVLYLSLNRLGPPQQGL 345
Query: 772 ELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQXXXXXXXXXXIKDVY 831
EL +G ++ A+ +A G IR GD+G VA+ R TQ + V+
Sbjct: 346 ELGVGDGVLLKAVAQATGRQLESIRAEVAEKGDVGLVAENSRSTQRLMLPSPPLTVSGVF 405
Query: 832 SMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQ 891
+ C I+ TGS S A+K +I L +CR E +F+ R+L LR+G +++L ALAQ
Sbjct: 406 TKFCDIARLTGSASMAKKMDIIKGLFVACRYSEARFIARSLSGRLRLGLAEQSVLAALAQ 465
Query: 892 AVVMNS-SLEF------SHEGKM-ENLKEKLQSLSAAAVEAYNXXXXXXXXXXXXMNKGI 943
A + EF + +GK E K L+ + + + G+
Sbjct: 466 AGSLTPPGQEFPTVVVDAGKGKTAEARKMWLEEQGMILKQTFCEVPDLDRIIPVLLEHGL 525
Query: 944 GFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVR 1003
+ PGVP+KPMLA T GV +VLK F+ FTCEYKY GQRAQIH L G V+
Sbjct: 526 ESLPEHCKLSPGVPLKPMLAHPTRGVREVLKRFEEVDFTCEYKYYGQRAQIHVLEGGEVK 585
Query: 1004 IFSRNGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERG 1063
IFSRN ++ + ++PD+IS I + P+ +FILD E VA DR+ +I FQ L++R+R
Sbjct: 586 IFSRNQEDNSGKYPDIISRIPKIKHPSVTSFILDTEAVAWDREKK-QIQPFQVLTTRKRK 644
Query: 1064 GKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEM 1123
D+ ++V +C++ FD+++ NGE L L +RR+ L++ F + + G F +A +
Sbjct: 645 EVDA----SEIQVQVCLYAFDLIYLNGESLARQPLSRRRQLLRENFVETE-GEFVFATSL 699
Query: 1124 TVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
T D+ +I FLE+++ SCEG++VK+LDVDA Y +KRS +W
Sbjct: 700 D--------TKDIE--QIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNW 742
>UNIPROTKB|B4DTU4 [details] [associations]
symbol:LIG1 "DNA ligase" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0051103 "DNA ligation
involved in DNA repair" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0003910 "DNA
ligase (ATP) activity" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0006310 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AC011466 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 UniGene:Hs.1770 HGNC:HGNC:6598
HOVERGEN:HBG005514 ChiTaRS:LIG1 EMBL:AK300370 IPI:IPI01011603
SMR:B4DTU4 STRING:B4DTU4 Ensembl:ENST00000427526 UCSC:uc010xzg.1
Uniprot:B4DTU4
Length = 888
Score = 799 (286.3 bits), Expect = 1.8e-79, P = 1.8e-79
Identities = 213/675 (31%), Positives = 335/675 (49%)
Query: 515 STLSPSKRKKTVTNNPKKKGKVPSKMESSGAKQPTITSFFNKLLPNMSQGDVVESKSEEC 574
S +SP + + NN P M+SS + P + K LP + +V+E +SE+
Sbjct: 58 SQVSPPRPATSPENNASLSDTSP--MDSSPSGIPKRRTA-RKQLPKRTIQEVLEEQSEDE 114
Query: 575 PKDENPLQSNAIKTYGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYDNQEG 634
++ + +T E + + ++ E G T K S A E
Sbjct: 115 DREAKRKKEEEEETPKESLTE-AEVATEKEGEDGDQPTTPPKPL-KTSKAETPTESVSEP 172
Query: 635 DRGKTVNRLEFSKSSVQSDSCNKDCSSALEKIVSEELQHITDMSVQRPSKE-----LMDP 689
+ E + + K SS + + + P KE +DP
Sbjct: 173 EVATKQELQEEEEQTKPPRRAPKTLSSFFTPRKPAVKKEVKEEEPGAPGKEGAAEGPLDP 232
Query: 690 TLVSLPPEKYDPIEHACWSSGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALS 749
+ + Y P+E ACW GQ PY+ +ARTF+ +E +++ + L N+ RS++ALS
Sbjct: 233 SGYNPAKNNYHPVEDACWKPGQKVPYLAVARTFEKIEEVSARLRMVETLSNLLRSVVALS 292
Query: 750 PDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVA 809
P D+LP +YL N + + +EL +G ++ A+ +A G +R GD+G VA
Sbjct: 293 PPDLLPVLYLSLNHLGPPQQGLELGVGDGVLLKAVAQATGRQLESVRAEAAEKGDVGLVA 352
Query: 810 QECRQTQXXXXXXXXXXIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLV 869
+ R TQ V+S I+ TGS STA+K +I L +CR E +F+
Sbjct: 353 ENSRSTQRLMLPPPPLTASGVFSKFRDIARLTGSASTAKKIDIIKGLFVACRHSEARFIA 412
Query: 870 RTLVRNLRIGAMMRTILPALAQAVVMNS-SLEF------SHEGKM-ENLKEKLQSLSAAA 921
R+L LR+G +++L AL+QAV + EF + +GK E K L+
Sbjct: 413 RSLSGRLRLGLAEQSVLAALSQAVSLTPPGQEFPPAMVDAGKGKTAEARKTWLEEQGMIL 472
Query: 922 VEAYNXXXXXXXXXXXXMNKGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAF 981
+ + + G+ + PG+P+KPMLA T G+ +VLK F+ AF
Sbjct: 473 KQTFCEVPDLDRIIPVLLEHGLERLPEHCKLSPGIPLKPMLAHPTRGISEVLKRFEEAAF 532
Query: 982 TCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILDAEVV 1041
TCEYKYDGQRAQIH L G V+IFSRN ++ T ++PD+IS I + P+ +FILD E V
Sbjct: 533 TCEYKYDGQRAQIHALEGGEVKIFSRNQEDNTGKYPDIISRIPKIKLPSVTSFILDTEAV 592
Query: 1042 AIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQR 1101
A DR+ +I FQ L++R+R D+ ++V +C++ FD+++ NGE L+ L +R
Sbjct: 593 AWDREKK-QIQPFQVLTTRKRKEVDA----SEIQVQVCLYAFDLIYLNGESLVREPLSRR 647
Query: 1102 RKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSL 1161
R+ L++ F + + G F +A + T D+ +I FLE+++ SCEG++VK+L
Sbjct: 648 RQLLRENFVETE-GEFVFATSLD--------TKDIE--QIAEFLEQSVKDSCEGLMVKTL 696
Query: 1162 DVDAGYSPSKRSDSW 1176
DVDA Y +KRS +W
Sbjct: 697 DVDATYEIAKRSHNW 711
>UNIPROTKB|F5GZ28 [details] [associations]
symbol:LIG1 "DNA ligase" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0051103 "DNA ligation
involved in DNA repair" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0003910 "DNA
ligase (ATP) activity" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0006310 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AC011466 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 HGNC:HGNC:6598 ChiTaRS:LIG1 IPI:IPI01010243
ProteinModelPortal:F5GZ28 SMR:F5GZ28 Ensembl:ENST00000536218
UCSC:uc010xzf.1 ArrayExpress:F5GZ28 Bgee:F5GZ28 Uniprot:F5GZ28
Length = 851
Score = 795 (284.9 bits), Expect = 5.4e-79, P = 5.4e-79
Identities = 180/498 (36%), Positives = 277/498 (55%)
Query: 687 MDPTLVSLPPEKYDPIEHACWSSGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLL 746
+DP+ + Y P+E ACW GQ PY+ +ARTF+ +E +++ + L N+ RS++
Sbjct: 193 LDPSGYNPAKNNYHPVEDACWKPGQKVPYLAVARTFEKIEEVSARLRMVETLSNLLRSVV 252
Query: 747 ALSPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLG 806
ALSP D+LP +YL N + + +EL +G ++ A+ +A G +R GD+G
Sbjct: 253 ALSPPDLLPVLYLSLNHLGPPQQGLELGVGDGVLLKAVAQATGRQLESVRAEAAEKGDVG 312
Query: 807 DVAQECRQTQXXXXXXXXXXIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMK 866
VA+ R TQ V+S I+ TGS STA+K +I L +CR E +
Sbjct: 313 LVAENSRSTQRLMLPPPPLTASGVFSKFRDIARLTGSASTAKKIDIIKGLFVACRHSEAR 372
Query: 867 FLVRTLVRNLRIGAMMRTILPALAQAVVMNS-SLEF------SHEGKM-ENLKEKLQSLS 918
F+ R+L LR+G +++L AL+QAV + EF + +GK E K L+
Sbjct: 373 FIARSLSGRLRLGLAEQSVLAALSQAVSLTPPGQEFPPAMVDAGKGKTAEARKTWLEEQG 432
Query: 919 AAAVEAYNXXXXXXXXXXXXMNKGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQN 978
+ + + G+ + PG+P+KPMLA T G+ +VLK F+
Sbjct: 433 MILKQTFCEVPDLDRIIPVLLEHGLERLPEHCKLSPGIPLKPMLAHPTRGISEVLKRFEE 492
Query: 979 KAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILDA 1038
AFTCEYKYDGQRAQIH L G V+IFSRN ++ T ++PD+IS I + P+ +FILD
Sbjct: 493 AAFTCEYKYDGQRAQIHALEGGEVKIFSRNQEDNTGKYPDIISRIPKIKLPSVTSFILDT 552
Query: 1039 EVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTL 1098
E VA DR+ +I FQ L++R+R D+ ++V +C++ FD+++ NGE L+ L
Sbjct: 553 EAVAWDREKK-QIQPFQVLTTRKRKEVDA----SEIQVQVCLYAFDLIYLNGESLVREPL 607
Query: 1099 RQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIV 1158
+RR+ L++ F + + G F +A + T D+ +I FLE+++ SCEG++V
Sbjct: 608 SRRRQLLRENFVETE-GEFVFATSLD--------TKDIE--QIAEFLEQSVKDSCEGLMV 656
Query: 1159 KSLDVDAGYSPSKRSDSW 1176
K+LDVDA Y +KRS +W
Sbjct: 657 KTLDVDATYEIAKRSHNW 674
>UNIPROTKB|P18858 [details] [associations]
symbol:LIG1 "DNA ligase 1" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0051103 "DNA ligation
involved in DNA repair" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051301 "cell division" evidence=IEA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IEA] [GO:0042542 "response to hydrogen peroxide"
evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0005694 "chromosome"
evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA] [GO:0006273
"lagging strand elongation" evidence=IBA] [GO:0006289
"nucleotide-excision repair" evidence=IBA;TAS] [GO:0003909 "DNA
ligase activity" evidence=IDA] [GO:0033151 "V(D)J recombination"
evidence=IDA] [GO:0006259 "DNA metabolic process" evidence=TAS]
[GO:0009653 "anatomical structure morphogenesis" evidence=TAS]
[GO:0000084 "S phase of mitotic cell cycle" evidence=TAS]
[GO:0000278 "mitotic cell cycle" evidence=TAS] [GO:0000722
"telomere maintenance via recombination" evidence=TAS] [GO:0000723
"telomere maintenance" evidence=TAS] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006271 "DNA strand
elongation involved in DNA replication" evidence=TAS] [GO:0006281
"DNA repair" evidence=TAS] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=TAS] [GO:0006284
"base-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0006302 "double-strand break repair" evidence=TAS] [GO:0032201
"telomere maintenance via semi-conservative replication"
evidence=TAS] Reactome:REACT_216 InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005739
GO:GO:0005524 GO:GO:0005694 Reactome:REACT_115566 GO:GO:0005654
GO:GO:0051301 GO:GO:0046872 GO:GO:0006284 GO:GO:0003677
GO:GO:0000724 EMBL:CH471177 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0009653 GO:GO:0000084 GO:GO:0000722
Reactome:REACT_383 GO:GO:0006283 DrugBank:DB00290 GO:GO:0032201
GO:GO:0006273 eggNOG:COG1793 HOGENOM:HOG000036006 KO:K10747
OMA:AQVACLY GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 EMBL:M36067 EMBL:AF527418
EMBL:AK314210 EMBL:BC108318 IPI:IPI00219841 PIR:A36048
RefSeq:NP_000225.1 UniGene:Hs.1770 PDB:1X9N PDBsum:1X9N
ProteinModelPortal:P18858 SMR:P18858 DIP:DIP-24215N IntAct:P18858
MINT:MINT-141868 STRING:P18858 PhosphoSite:P18858 DMDM:118773
PaxDb:P18858 PeptideAtlas:P18858 PRIDE:P18858
Ensembl:ENST00000263274 GeneID:3978 KEGG:hsa:3978 UCSC:uc002pia.1
CTD:3978 GeneCards:GC19M048618 HGNC:HGNC:6598 HPA:CAB037015
MIM:126391 neXtProt:NX_P18858 PharmGKB:PA30372 HOVERGEN:HBG005514
InParanoid:P18858 OrthoDB:EOG4RBQJ6 PhylomeDB:P18858
BindingDB:P18858 ChEMBL:CHEMBL5694 ChiTaRS:LIG1
EvolutionaryTrace:P18858 GenomeRNAi:3978 NextBio:15592
ArrayExpress:P18858 Bgee:P18858 CleanEx:HS_LIG1
Genevestigator:P18858 GermOnline:ENSG00000105486 GO:GO:0006297
Uniprot:P18858
Length = 919
Score = 795 (284.9 bits), Expect = 5.4e-79, P = 5.4e-79
Identities = 180/498 (36%), Positives = 277/498 (55%)
Query: 687 MDPTLVSLPPEKYDPIEHACWSSGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLL 746
+DP+ + Y P+E ACW GQ PY+ +ARTF+ +E +++ + L N+ RS++
Sbjct: 261 LDPSGYNPAKNNYHPVEDACWKPGQKVPYLAVARTFEKIEEVSARLRMVETLSNLLRSVV 320
Query: 747 ALSPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLG 806
ALSP D+LP +YL N + + +EL +G ++ A+ +A G +R GD+G
Sbjct: 321 ALSPPDLLPVLYLSLNHLGPPQQGLELGVGDGVLLKAVAQATGRQLESVRAEAAEKGDVG 380
Query: 807 DVAQECRQTQXXXXXXXXXXIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMK 866
VA+ R TQ V+S I+ TGS STA+K +I L +CR E +
Sbjct: 381 LVAENSRSTQRLMLPPPPLTASGVFSKFRDIARLTGSASTAKKIDIIKGLFVACRHSEAR 440
Query: 867 FLVRTLVRNLRIGAMMRTILPALAQAVVMNS-SLEF------SHEGKM-ENLKEKLQSLS 918
F+ R+L LR+G +++L AL+QAV + EF + +GK E K L+
Sbjct: 441 FIARSLSGRLRLGLAEQSVLAALSQAVSLTPPGQEFPPAMVDAGKGKTAEARKTWLEEQG 500
Query: 919 AAAVEAYNXXXXXXXXXXXXMNKGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQN 978
+ + + G+ + PG+P+KPMLA T G+ +VLK F+
Sbjct: 501 MILKQTFCEVPDLDRIIPVLLEHGLERLPEHCKLSPGIPLKPMLAHPTRGISEVLKRFEE 560
Query: 979 KAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILDA 1038
AFTCEYKYDGQRAQIH L G V+IFSRN ++ T ++PD+IS I + P+ +FILD
Sbjct: 561 AAFTCEYKYDGQRAQIHALEGGEVKIFSRNQEDNTGKYPDIISRIPKIKLPSVTSFILDT 620
Query: 1039 EVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTL 1098
E VA DR+ +I FQ L++R+R D+ ++V +C++ FD+++ NGE L+ L
Sbjct: 621 EAVAWDREKK-QIQPFQVLTTRKRKEVDA----SEIQVQVCLYAFDLIYLNGESLVREPL 675
Query: 1099 RQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIV 1158
+RR+ L++ F + + G F +A + T D+ +I FLE+++ SCEG++V
Sbjct: 676 SRRRQLLRENFVETE-GEFVFATSLD--------TKDIE--QIAEFLEQSVKDSCEGLMV 724
Query: 1159 KSLDVDAGYSPSKRSDSW 1176
K+LDVDA Y +KRS +W
Sbjct: 725 KTLDVDATYEIAKRSHNW 742
>UNIPROTKB|Q2TB12 [details] [associations]
symbol:LIG1 "DNA ligase" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0051103 "DNA ligation
involved in DNA repair" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0003910 "DNA
ligase (ATP) activity" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 PROSITE:PS00333 PROSITE:PS00697
PROSITE:PS50160 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 IPI:IPI00219841 UniGene:Hs.1770
HOVERGEN:HBG005514 ChiTaRS:LIG1 EMBL:BC110622
ProteinModelPortal:Q2TB12 SMR:Q2TB12 STRING:Q2TB12 PRIDE:Q2TB12
ArrayExpress:Q2TB12 Uniprot:Q2TB12
Length = 801
Score = 795 (284.9 bits), Expect = 5.4e-79, P = 5.4e-79
Identities = 180/498 (36%), Positives = 277/498 (55%)
Query: 687 MDPTLVSLPPEKYDPIEHACWSSGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLL 746
+DP+ + Y P+E ACW GQ PY+ +ARTF+ +E +++ + L N+ RS++
Sbjct: 261 LDPSGYNPAKNNYHPVEDACWKPGQKVPYLAVARTFEKIEEVSARLRMVETLSNLLRSVV 320
Query: 747 ALSPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLG 806
ALSP D+LP +YL N + + +EL +G ++ A+ +A G +R GD+G
Sbjct: 321 ALSPPDLLPVLYLSLNHLGPPQQGLELGVGDGVLLKAVAQATGRQLESVRAEAAEKGDVG 380
Query: 807 DVAQECRQTQXXXXXXXXXXIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMK 866
VA+ R TQ V+S I+ TGS STA+K +I L +CR E +
Sbjct: 381 LVAENSRSTQRLMLPPPPLTASGVFSKFRDIARLTGSASTAKKIDIIKGLFVACRHSEAR 440
Query: 867 FLVRTLVRNLRIGAMMRTILPALAQAVVMNS-SLEF------SHEGKM-ENLKEKLQSLS 918
F+ R+L LR+G +++L AL+QAV + EF + +GK E K L+
Sbjct: 441 FIARSLSGRLRLGLAEQSVLAALSQAVSLTPPGQEFPPAMVDAGKGKTAEARKTWLEEQG 500
Query: 919 AAAVEAYNXXXXXXXXXXXXMNKGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQN 978
+ + + G+ + PG+P+KPMLA T G+ +VLK F+
Sbjct: 501 MILKQTFCEVPDLDRIIPVLLEHGLERLPEHCKLSPGIPLKPMLAHPTRGISEVLKRFEE 560
Query: 979 KAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILDA 1038
AFTCEYKYDGQRAQIH L G V+IFSRN ++ T ++PD+IS I + P+ +FILD
Sbjct: 561 AAFTCEYKYDGQRAQIHALEGGEVKIFSRNQEDNTGKYPDIISRIPKIKLPSVTSFILDT 620
Query: 1039 EVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTL 1098
E VA DR+ +I FQ L++R+R D+ ++V +C++ FD+++ NGE L+ L
Sbjct: 621 EAVAWDREKK-QIQPFQVLTTRKRKEVDA----SEIQVQVCLYAFDLIYLNGESLVREPL 675
Query: 1099 RQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIV 1158
+RR+ L++ F + + G F +A + T D+ +I FLE+++ SCEG++V
Sbjct: 676 SRRRQLLRENFVETE-GEFVFATSLD--------TKDIE--QIAEFLEQSVKDSCEGLMV 724
Query: 1159 KSLDVDAGYSPSKRSDSW 1176
K+LDVDA Y +KRS +W
Sbjct: 725 KTLDVDATYEIAKRSHNW 742
>UNIPROTKB|F1RL99 [details] [associations]
symbol:LIG1 "DNA ligase" species:9823 "Sus scrofa"
[GO:0042542 "response to hydrogen peroxide" evidence=IEA]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003910 "DNA ligase (ATP) activity" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0051103 "DNA ligation involved in DNA repair"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 OMA:AQVACLY
GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 GeneTree:ENSGT00700000104556 EMBL:FP102640
Ensembl:ENSSSCT00000003469 Uniprot:F1RL99
Length = 915
Score = 794 (284.6 bits), Expect = 7.1e-79, P = 7.1e-79
Identities = 180/497 (36%), Positives = 274/497 (55%)
Query: 688 DPTLVSLPPEKYDPIEHACWSSGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLA 747
DP + Y P++ ACW +GQ PY+ +ARTF+ +E +++ + L N+ RS++A
Sbjct: 258 DPPSYNPAKNNYHPVQDACWQAGQRVPYLAVARTFEKIEEVSARLRMVETLSNLLRSVVA 317
Query: 748 LSPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGD 807
LSP D+LP +YL N++ + +EL IG ++ A+ +A G +R GD+G
Sbjct: 318 LSPADLLPVLYLSLNRLGPPQQGLELGIGDGILLKAVAQATGRQLESVRAEVAEKGDVGL 377
Query: 808 VAQECRQTQXXXXXXXXXXIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKF 867
VA+ R TQ +++ I+ GS STA+K +I L +CR E +F
Sbjct: 378 VAESSRSTQRLVLPPPALTAAGIFTKFRDIAQLAGSASTAKKMEIIKGLFVACRHSEARF 437
Query: 868 LVRTLVRNLRIGAMMRTILPALAQAVVMNS-SLEF------SHEGKM-ENLKEKLQSLSA 919
+ R L LR+G +++L ALAQA + EF + +GK E K L+
Sbjct: 438 IARALSGRLRLGLAEQSVLAALAQAASLTPPGQEFPPAMVDAGKGKTAEARKTWLEEQGM 497
Query: 920 AAVEAYNXXXXXXXXXXXXMNKGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNK 979
+ + + G+ + PGVP+KPMLA T GV +VLK F+
Sbjct: 498 ILKQTFCEVPDLDRIVPVLLEHGLERLPEHCRLSPGVPLKPMLAHPTRGVSEVLKRFEEA 557
Query: 980 AFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILDAE 1039
AFTCEYKYDGQRAQIH L G V+IFSRN ++ T R+PD+IS I + P+ +FILDAE
Sbjct: 558 AFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGRYPDIISRIPKIKLPSVTSFILDAE 617
Query: 1040 VVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLR 1099
VA DR+ +I FQ L++R+R D+ ++V +C++ FD+++ NGE L+ L
Sbjct: 618 AVAWDREKK-QIQPFQVLTTRKRKEVDAA----EIQVQVCLYAFDLIYLNGESLVREPLS 672
Query: 1100 QRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVK 1159
+RR+ L++ F + + G F +A + + D +I FLE+++ SCEG++VK
Sbjct: 673 RRRQLLRENFVETE-GEFVFATSLDTKDTD----------QIAEFLEQSVKDSCEGLMVK 721
Query: 1160 SLDVDAGYSPSKRSDSW 1176
+LDVDA Y +KRS +W
Sbjct: 722 TLDVDATYEIAKRSHNW 738
>DICTYBASE|DDB_G0274493 [details] [associations]
symbol:lig1 "DNA ligase I" species:44689
"Dictyostelium discoideum" [GO:0051103 "DNA ligation involved in
DNA repair" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IEA;IBA] [GO:0003909 "DNA ligase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IBA] [GO:0006273 "lagging
strand elongation" evidence=IBA] [GO:0006266 "DNA ligation"
evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA] [GO:0005694
"chromosome" evidence=IBA] [GO:0005634 "nucleus" evidence=IEA;IBA]
[GO:0051301 "cell division" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016874 "ligase activity" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 dictyBase:DDB_G0274493
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0051301 GO:GO:0046872 GO:GO:0003677 GenomeReviews:CM000151_GR
EMBL:AAFI02000012 GO:GO:0007049 GO:GO:0006310 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006289 GO:GO:0006273
eggNOG:COG1793 KO:K10747 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574
RefSeq:XP_644124.1 HSSP:P18858 ProteinModelPortal:Q869E1
STRING:Q869E1 EnsemblProtists:DDB0232265 GeneID:8619554
KEGG:ddi:DDB_G0274493 OMA:SERYSIM Uniprot:Q869E1
Length = 1192
Score = 806 (288.8 bits), Expect = 2.4e-78, P = 2.4e-78
Identities = 231/812 (28%), Positives = 402/812 (49%)
Query: 398 EEGAGSGSNEGLSKEGEVKSKKTKATEXXXXXXXXXXXXRLEEFGSKDVTALDDEETEKM 457
+E E KE E K KK K + + +E K+ D E+ EK
Sbjct: 233 KESKEKEKKEKEKKEKEEKDKKEKELKEKELKEKELKDKKEKELKEKEKELKDKEKKEKE 292
Query: 458 VQEIRNCLPTWVTQNQILDLISSSGRNIVDAVSNFYE-HETQLYEQEYKLPTIKHSIKST 516
++E + + + + + + E E +L E+E K +K K
Sbjct: 293 LKE-KEKKEKEEKEKEKKEKKEKELKEKEEKEKKEKELKEKELKEKELKEKELKE--KEL 349
Query: 517 LSPSKRKKTVTN-----NPKKKGKVP---SKMESSGAKQ-----PTITSFFNKLLPNM-S 562
SP K +++ N + K VP SK + KQ PT T+ K P + +
Sbjct: 350 TSPKKETIDISDLFKRANAEAKSSVPTSTSKNSKTNKKQKVDHKPTATT--KKPSPVLEA 407
Query: 563 QGDVVESKSEECPKDENPLQSNAIKTYGEEIDQFLKIINGNESLKGYAATLL---EKTKG 619
+ + + + S +I + ++ ++ ++I + ++ + EK K
Sbjct: 408 KQSTTTTTTTTTTSTATTISSKSISSPSKKEEK--EVITSKKQVEATKVEVKKEKEKEKE 465
Query: 620 NVSMALDLYYDNQEGDRGKT--VNRLEFSKSSVQSDSCNKDCSSALEK----IVSEELQH 673
+ + +E D K ++ E+ + + + + EK I S+ ++
Sbjct: 466 KEKEDDEEEEEEEEDDDEKLEDIDEEEYEEEEEEDEEGISENEEEEEKKSTQIKSKFIKK 525
Query: 674 ITDMSVQRPSKELMDPTLVSLPPEKYDPIEHACWSSGQPAPYIHLARTFDLVEAERGKIK 733
+ +S ++ + + + L + KY PIE A W G+ PY+ LA+TF+++E+ ++
Sbjct: 526 VP-ISKKKGNAKTIQADLKVIG--KYRPIEDAQWKKGEAVPYMVLAKTFEMMESTSSRLI 582
Query: 734 AMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEACGTNRS 793
+ L N+FRS++ LSP D++ +YL NKI ++++ EL IG ++ ++ E+ G +
Sbjct: 583 IIEHLANLFRSIMLLSPKDLVMTIYLSINKIGPSYQSKELGIGEHVLIKSLAESTGRSVD 642
Query: 794 KIRDMYNRLGDLGDVAQECRQTQXXXXXXXXXXIKDVYSMLCKISVQTGSGSTARKKSLI 853
I+ +GDLG +AQ R TQ I+ V+ +I+ +G+G +KK LI
Sbjct: 643 VIKQELTEVGDLGIIAQNSRSTQTLMGKPTPLTIQSVFKTFQQIADLSGTGGQQKKKDLI 702
Query: 854 VNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQAVVMNSSLEFSHEG-------- 905
L+ SC++ E +++R+L LRIG R++L ALA++V++ ++ S +
Sbjct: 703 KKLLVSCKDCETLYIIRSLQGKLRIGLAERSVLMALAKSVLVTPPIDGSGQQIFDIRKQM 762
Query: 906 KMENLKEKLQSLSAAAVEAYNXXXXXXXXXXXXMN-KGIGFSASTLSMVPGVPIKPMLAK 964
K E +E+ Q++ + AY+ + GI ST S+ G+P+KPMLA+
Sbjct: 763 KQEEFEERYQNVVSKVTRAYSQLPNYDLFVPHLIAVNGIDNILSTCSLKVGIPVKPMLAQ 822
Query: 965 ITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIIN 1024
T G+ Q+L F + FTCE+KYDG+RAQIH+L DGT I++RN ++ T ++PD+++ +
Sbjct: 823 PTTGISQMLDRFSDMEFTCEFKYDGERAQIHRLPDGTTHIYTRNLEDYTQKYPDIVANVT 882
Query: 1025 EFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFD 1084
+F P +FILD E VA D KI+SFQ LS+R R + + +KV +CVF FD
Sbjct: 883 KFVGPNVKSFILDCEAVAFDAATK-KILSFQVLSTRARKS----VQLSQIKVPVCVFAFD 937
Query: 1085 IMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNF 1144
+++ NG+ L+ L +RR++L + F G F +AK + SDV+ I ++
Sbjct: 938 LLYLNGQSLIDEPLIKRREHLVENFIASD-GVFAFAKYSNI--------SDVN--DIQSY 986
Query: 1145 LEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
LEEA+ +CEG++VK+L + Y PS+RS +W
Sbjct: 987 LEEAVEGNCEGLMVKTLKEKSIYEPSRRSYNW 1018
>UNIPROTKB|E2QTV4 [details] [associations]
symbol:LIG1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051103 "DNA ligation involved in DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 Ensembl:ENSCAFT00000006495 Uniprot:E2QTV4
Length = 919
Score = 773 (277.2 bits), Expect = 4.0e-78, Sum P(2) = 4.0e-78
Identities = 179/500 (35%), Positives = 272/500 (54%)
Query: 687 MDPTLVSLPPEKYDPIEHACWSSGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLL 746
+DP + Y PI+ ACW GQ PY+ +ARTF+ +E +++ + L N+ RS++
Sbjct: 260 LDPPSYNPAKNNYHPIDDACWKPGQKVPYLAVARTFEKIEEVSARLRMVETLSNLLRSVV 319
Query: 747 ALSPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEACGTNRS--KIRDMYNRLGD 804
ALSP D+LP +YL N++ + +EL +G ++ A+ +A R ++ GD
Sbjct: 320 ALSPPDLLPILYLSLNRLGPPQQGLELGVGDGVLLKAVAQATAQGRQLDSVKAEAAEKGD 379
Query: 805 LGDVAQECRQTQXXXXXXXXXXIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKE 864
+G VA+ R TQ V++ I+ GS STA+K +I L +CR E
Sbjct: 380 VGLVAENSRSTQRLMLPPPALTAAGVFAKFRDIARLAGSASTAKKIDVIKGLFVACRHSE 439
Query: 865 MKFLVRTLVRNLRIGAMMRTILPALAQAVVMNS-SLEFS----HEGK---MENLKEKLQS 916
+F+ R L LR+G +++L ALAQAV + EF GK E K L+
Sbjct: 440 ARFIARALSGRLRLGLAEQSVLAALAQAVSLTPPGQEFPPAVVDAGKGRTAEARKTWLEE 499
Query: 917 LSAAAVEAYNXXXXXXXXXXXXMNKGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLF 976
+ + + G+ + PGVP+KPMLA T GV +VLK F
Sbjct: 500 QGMILKQTFCEVPDLDRIIPVLLEHGLEHLPEHCRLSPGVPLKPMLAHPTRGVSEVLKRF 559
Query: 977 QNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFIL 1036
+ AFTCEYKYDGQRAQIH L G V+IFSRN ++ T ++PD+IS I + P+ +FIL
Sbjct: 560 EEAAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGKYPDIISRIPKIKLPSVTSFIL 619
Query: 1037 DAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGY 1096
D E VA DR+ +I FQ L++R+R D+ ++V +C++ FD+++ NGE L+
Sbjct: 620 DTEAVAWDREKK-QIQPFQVLTTRKRKEVDAA----EIQVQVCLYAFDLIYLNGESLVRE 674
Query: 1097 TLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGI 1156
L +RR+ L++ F + + G F +A + + D +I FLE+++ SCEG+
Sbjct: 675 PLSRRRQLLRENFVETE-GEFVFATSLDTKDTD----------QIAEFLEQSVKDSCEGL 723
Query: 1157 IVKSLDVDAGYSPSKRSDSW 1176
+VK+LDVDA Y +KRS +W
Sbjct: 724 MVKTLDVDATYEIAKRSHNW 743
Score = 38 (18.4 bits), Expect = 4.0e-78, Sum P(2) = 4.0e-78
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 24 SPPDSLIFPPIPRTFPPS 41
+P + PP P T+P S
Sbjct: 84 APGSPQVSPPSPVTYPES 101
>UNIPROTKB|A4IFC8 [details] [associations]
symbol:LIG1 "DNA ligase" species:9913 "Bos taurus"
[GO:0006289 "nucleotide-excision repair" evidence=IBA] [GO:0006273
"lagging strand elongation" evidence=IBA] [GO:0006266 "DNA
ligation" evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0042542 "response to hydrogen peroxide" evidence=IEA]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0051103
"DNA ligation involved in DNA repair" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006273
eggNOG:COG1793 HOGENOM:HOG000036006 KO:K10747 OMA:AQVACLY
GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 GeneTree:ENSGT00700000104556 CTD:3978
HOVERGEN:HBG005514 EMBL:DAAA02047435 EMBL:BC134518 IPI:IPI00686777
RefSeq:NP_001096018.1 UniGene:Bt.12876 SMR:A4IFC8 STRING:A4IFC8
Ensembl:ENSBTAT00000031920 GeneID:100124507 KEGG:bta:100124507
NextBio:20788728 Uniprot:A4IFC8
Length = 916
Score = 782 (280.3 bits), Expect = 1.8e-77, P = 1.8e-77
Identities = 230/706 (32%), Positives = 354/706 (50%)
Query: 501 EQEYKLPTIKHSIK-STLSPSKRKKT-VT---NNPKKKGKVPSKMESSGA-KQPTITSFF 554
E+E + PT S K ++ SP + VT ++P P+ SG K+ T
Sbjct: 70 EEEEEAPTTPRSQKPASDSPQASPPSPVTLPESSPSHSKPSPAVASPSGIPKRRTA---- 125
Query: 555 NKLLPNMSQGDVV----ESKSEECPKDENPLQSNAIKTYGE-EIDQFLKIINGN------ 603
K LP + DV+ E K E K + I++ E E D ++ G+
Sbjct: 126 RKQLPKRTFQDVLKEQGEDKDPETKKKKEEEAETPIESLPEPEGDDKEEVEGGDQPTTPP 185
Query: 604 ESLKGYAATLLEK-TKGNVSMALDLYYDNQEGDRGKTVNRLE--FS--KSSVQSDSCNKD 658
E K +L E ++ V++ + D Q KT L FS K +V+ ++ ++
Sbjct: 186 EPRKTSTESLTESVSEPGVTVKQEPQEDGQAQPPPKTPKTLSSFFSPRKPAVKKEA-KEE 244
Query: 659 CSSALEKIVSEELQHITDMSVQRPSKELMDPTLVSLPPEKYDPIEHACWSSGQPAPYIHL 718
AL K +E++ D + P+K Y PIE ACW +GQ PY+ +
Sbjct: 245 GPGALRK---DEIKGHVDPASYNPAKN------------NYHPIEDACWKAGQRVPYLAV 289
Query: 719 ARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENIELNIGGS 778
AR F+ +E +++ + L N+ RS++ALSP D+LP +YL N++ + +EL IG
Sbjct: 290 ARAFEKIEEVSARLRMVETLSNLLRSVVALSPADLLPVLYLSLNRLGPPQQGLELGIGEG 349
Query: 779 LVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQXXXXXXXXXXIKDVYSMLCKIS 838
++ A+ +A G +R GD+G VA+ R TQ V++ I+
Sbjct: 350 ILLKAVAQATGRQLESVRAEVAEKGDVGLVAESSRSTQRLVLPPPALTAAGVFAKFRDIA 409
Query: 839 VQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQAVVMNS- 897
GS ST +K +I L +CR E +F+ R L LR+G +++L ALAQAV +
Sbjct: 410 QLAGSASTTKKIDVIKGLFVACRHSEARFIARALSGRLRLGLAEQSVLAALAQAVSLTPP 469
Query: 898 SLEF------SHEGKM-ENLKEKLQSLSAAAVEAYNXXXXXXXXXXXXMNKGIGFSASTL 950
S E + +GK E K L+ + + + G+
Sbjct: 470 SQECPPAVVDAGKGKTAEARKTWLEEQGMILKQTFCEVPDLERIVPVLLEHGLERLPEHC 529
Query: 951 SMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGD 1010
+ PGVP+KPMLA T GV +VLK F+ AFTCEYKYDGQRAQIH L G V+IFSRN +
Sbjct: 530 RLSPGVPLKPMLAHPTRGVSEVLKRFEEAAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQE 589
Query: 1011 ETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVIT 1070
+ T R+PD+IS I + P+ +FILD E VA DR+ +I FQ L++R+R D+
Sbjct: 590 DNTGRYPDIISRIPKIKLPSVTSFILDTEAVAWDREKK-QIQPFQVLTTRKRKEVDAA-- 646
Query: 1071 IKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDN 1130
++V +C++ FD+++ NG+ L+ L +RR+ L++ F + + G F +A +
Sbjct: 647 --EIQVQVCLYAFDLIYLNGKSLVREPLSRRRQLLRENFVETE-GEFVFATSLD------ 697
Query: 1131 CLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
T D +I FLE+++ SCEG++VK+LDVDA Y +KRS +W
Sbjct: 698 --TKDTE--QIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNW 739
>UNIPROTKB|H9L3I6 [details] [associations]
symbol:LIG1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003910 "DNA
ligase (ATP) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0051103 "DNA ligation involved in DNA repair" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IEA] [GO:0042542 "response to hydrogen peroxide"
evidence=IEA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS50160 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
OMA:AQVACLY GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 GeneTree:ENSGT00700000104556
EMBL:AADN02065151 EMBL:AADN02065152 EMBL:AADN02065153
Ensembl:ENSGALT00000040526 Uniprot:H9L3I6
Length = 661
Score = 761 (272.9 bits), Expect = 4.5e-75, P = 4.5e-75
Identities = 172/486 (35%), Positives = 270/486 (55%)
Query: 699 YDPIEHACWSSGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVY 758
Y P++ ACW G+ PY+ +ARTF+ +E ++K + +L N+ RS++ALSP ++LP +
Sbjct: 17 YHPVQDACWGHGRSVPYLAVARTFERIEEASSRLKIIEILTNLLRSVVALSPSELLPCLL 76
Query: 759 LCTNKIASNHENIELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQXX 818
LC N+ + E +EL IG +L+T A+ +A G ++IR GDLG VA+ R TQ
Sbjct: 77 LCLNRPGAPSEGLELGIGETLLTRALAQATGRQLAQIRSEAQDKGDLGLVAESSRCTQRT 136
Query: 819 XXXXXXXXIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRI 878
V L +++ +G+ S ++K +I L +CR E ++LVR+L LRI
Sbjct: 137 VVPPAPLSASGVLGKLREMAAMSGNASASKKIDIIKGLFVACRHSEARYLVRSLSGKLRI 196
Query: 879 GAMMRTILPALAQAVVMNSS-----LEFSHEGKM---ENLKEKLQSLSAAAVEAYNXXXX 930
G +++L ALA A+ + L G+ + + L+ S + +
Sbjct: 197 GLAEQSVLTALAHAIALTPPGQEWPLAVVDAGQSMAPDARRTWLEEQSRILKQTFCELPD 256
Query: 931 XXXXXXXXMNKGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQ 990
+ G+ + PGVP+KPMLA+ V ++LK F+ AFTCEYKYDG+
Sbjct: 257 YAAIVPVLLEHGLEQLPKHCGITPGVPLKPMLAQPARCVSELLKRFEEAAFTCEYKYDGE 316
Query: 991 RAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCK 1050
R QIH L G V I+SRN + TTS++PDL+ I + KP + ILDAE VA D+ +
Sbjct: 317 RTQIHVLESGAVFIYSRNQENTTSKYPDLVQRIPKMLKPGVRSCILDAEAVAWDKVTK-Q 375
Query: 1051 IMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFY 1110
+ FQ L +R+R KD + ++KV +CV+ FD+++ NGE L+ L RR+ L+ F
Sbjct: 376 LQPFQVLMTRKR--KD--VDAAAIKVQVCVYAFDLLYLNGEPLVREPLATRRQLLRQSF- 430
Query: 1111 DEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPS 1170
+E G F +A M D ++++FL++A+ +SCEG++VK+L+V+A Y +
Sbjct: 431 EEVEGEFLFATSMDTRSAD----------EVSDFLDKAIKASCEGLMVKTLEVEATYEIA 480
Query: 1171 KRSDSW 1176
KRS W
Sbjct: 481 KRSHKW 486
>TAIR|locus:2199953 [details] [associations]
symbol:LIG1 "DNA ligase 1" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003909 "DNA
ligase activity" evidence=IEA] [GO:0003910 "DNA ligase (ATP)
activity" evidence=IEA;ISS;IBA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006266 "DNA ligation" evidence=IBA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0000012 "single strand break
repair" evidence=IMP] [GO:0006260 "DNA replication" evidence=IMP]
[GO:0006302 "double-strand break repair" evidence=IMP] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0016458 "gene
silencing" evidence=RCA] [GO:0016570 "histone modification"
evidence=RCA] [GO:0034968 "histone lysine methylation"
evidence=RCA] [GO:0048449 "floral organ formation" evidence=RCA]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0007049 GO:GO:0006310 GO:GO:0006302
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0000012
EMBL:AC011438 EMBL:AC026875 EMBL:X97924 EMBL:AK117238 EMBL:BT005964
EMBL:AK222166 IPI:IPI00535474 PIR:S71278 RefSeq:NP_172293.2
UniGene:At.36 ProteinModelPortal:Q42572 SMR:Q42572 STRING:Q42572
PaxDb:Q42572 PRIDE:Q42572 EnsemblPlants:AT1G08130.1 GeneID:837333
KEGG:ath:AT1G08130 TAIR:At1g08130 eggNOG:COG1793
HOGENOM:HOG000036006 InParanoid:Q42572 KO:K10747 OMA:AQVACLY
PhylomeDB:Q42572 ProtClustDB:PLN03113 Genevestigator:Q42572
GermOnline:AT1G08130 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574
Uniprot:Q42572
Length = 790
Score = 759 (272.2 bits), Expect = 7.6e-75, P = 7.6e-75
Identities = 177/502 (35%), Positives = 271/502 (53%)
Query: 630 DNQEGDRGKTV---NRLEFSKSSVQ--SDSCN--KDCSSALEKIVSEELQHITDMSVQRP 682
+ Q+ + GKT+ L ++ ++ SDS N D SS E + + T +S
Sbjct: 88 ETQDANLGKTIVSEGTLPKTEDLLEPVSDSANPRSDTSSIAEDSKTGAKKAKT-LSKTDE 146
Query: 683 SKELMDPTLVSLPPEKYDPIEHACWSSGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMF 742
K + L+ P +DP + +CW G+ P++ +A FDL+ E G+I +LCNM
Sbjct: 147 MKSKIG--LLKKKPNDFDPEKMSCWEKGERVPFLFVALAFDLISNESGRIVITDILCNML 204
Query: 743 RSLLALSPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEACGTNRSKIRDMYNRL 802
R+++A +P+D++ VYL N+IA HE +EL IG S + AI EA G ++ L
Sbjct: 205 RTVIATTPEDLVATVYLSANEIAPAHEGVELGIGESTIIKAISEAFGRTEDHVKKQNTEL 264
Query: 803 GDLGDVAQECRQTQXXXXXXXXXXIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCRE 862
GDLG VA+ R TQ + V+ +I+ ++G S +KK+ + L+ + +
Sbjct: 265 GDLGLVAKGSRSTQTMMFKPEPLTVVKVFDTFRQIAKESGKDSNEKKKNRMKALLVATTD 324
Query: 863 KEMKFLVRTLVRNLRIGAMMRTILPALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAV 922
E +L R L LR+G +T+L AL QA V N H N K L+ +
Sbjct: 325 CEPLYLTRLLQAKLRLGFSGQTVLAALGQAAVYNEE----HSKPPPNTKSPLEEAAKIVK 380
Query: 923 EAYNXXXXXXXXXXXXMNKGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFT 982
+ + ++ G+ T + GVPI PMLAK T GV ++L FQ+ FT
Sbjct: 381 QVFTVLPVYDIIVPALLSGGVWNLPKTCNFTLGVPIGPMLAKPTKGVAEILNKFQDIVFT 440
Query: 983 CEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILDAEVVA 1042
CEYKYDG+RAQIH + DGT I+SRN + T ++PD+ ++ KP+ +FILD EVVA
Sbjct: 441 CEYKYDGERAQIHFMEDGTFEIYSRNAERNTGKYPDVALALSRLKKPSVKSFILDCEVVA 500
Query: 1043 IDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRR 1102
DR+ KI+ FQ LS+R R K+ + + +KV +C+F FD+++ NG+QL+ L+ RR
Sbjct: 501 FDREKK-KILPFQILSTRAR--KN--VNVNDIKVGVCIFAFDMLYLNGQQLIQENLKIRR 555
Query: 1103 KYLKDLFYDEKMGYFQYAKEMT 1124
+ L + F +E GYFQ+A +T
Sbjct: 556 EKLYESF-EEDPGYFQFATAVT 576
Score = 502 (181.8 bits), Expect = 6.8e-45, P = 6.8e-45
Identities = 107/274 (39%), Positives = 162/274 (59%)
Query: 903 HEGKMENLKEKLQSLSAAAVEAYNXXXXXXXXXXXXMNKGIGFSASTLSMVPGVPIKPML 962
H N K L+ + + + ++ G+ T + GVPI PML
Sbjct: 361 HSKPPPNTKSPLEEAAKIVKQVFTVLPVYDIIVPALLSGGVWNLPKTCNFTLGVPIGPML 420
Query: 963 AKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISI 1022
AK T GV ++L FQ+ FTCEYKYDG+RAQIH + DGT I+SRN + T ++PD+
Sbjct: 421 AKPTKGVAEILNKFQDIVFTCEYKYDGERAQIHFMEDGTFEIYSRNAERNTGKYPDVALA 480
Query: 1023 INEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFV 1082
++ KP+ +FILD EVVA DR+ KI+ FQ LS+R R K+ + + +KV +C+F
Sbjct: 481 LSRLKKPSVKSFILDCEVVAFDREKK-KILPFQILSTRAR--KN--VNVNDIKVGVCIFA 535
Query: 1083 FDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKIN 1142
FD+++ NG+QL+ L+ RR+ L + F +E GYFQ+A +T ++D+ +I
Sbjct: 536 FDMLYLNGQQLIQENLKIRREKLYESF-EEDPGYFQFATAVT--------SNDID--EIQ 584
Query: 1143 NFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
FL+ ++ CEG+I+K+LD DA Y P+KRS++W
Sbjct: 585 KFLDASVDVGCEGLIIKTLDSDATYEPAKRSNNW 618
>UNIPROTKB|Q75CS4 [details] [associations]
symbol:ACL155W "DNA ligase" species:284811 "Ashbya gossypii
ATCC 10895" [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0005694 "chromosome"
evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA] [GO:0006266
"DNA ligation" evidence=IBA] [GO:0006273 "lagging strand
elongation" evidence=IBA] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0005694 GO:GO:0006284 GO:GO:0003677
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0006289 GO:GO:0000278 EMBL:AE016816 GenomeReviews:AE016816_GR
GO:GO:0006273 HOGENOM:HOG000036006 KO:K10747 OMA:AQVACLY
GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 OrthoDB:EOG4RV60K RefSeq:NP_983249.1
ProteinModelPortal:Q75CS4 STRING:Q75CS4 EnsemblFungi:AAS51073
GeneID:4619369 KEGG:ago:AGOS_ACL155W PhylomeDB:Q75CS4
Uniprot:Q75CS4
Length = 697
Score = 734 (263.4 bits), Expect = 9.4e-74, Sum P(2) = 9.4e-74
Identities = 175/513 (34%), Positives = 271/513 (52%)
Query: 673 HITDMSVQRPSKELMD-PTLVSLPPEKYDPIEHACWSSGQPAP-----YIHLARTFDLVE 726
H D V+ EL D P + P+ + A S +PA Y L F+ VE
Sbjct: 47 HEQDAEVKNSLPELADKPAPGGVLPQAASAVPRAQSSPVKPAASTSVMYADLCAVFEAVE 106
Query: 727 AERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHE-NIELNIGGSLVTSAIE 785
A ++ + + S+L P ++P YL N++ ++E +EL +G ++ I
Sbjct: 107 ATSSRLSITKLCADFMYSVLKCDPGHLIPVTYLFINRLGPDYEPGLELGLGEGILIKTIS 166
Query: 786 EACGTNRSKIRDMYNRLGDLGDVAQECRQTQXXXXXXXXXXIKDVYSMLCKISVQTGSGS 845
+ACG + +++R Y GDLG VAQ+ R Q ++DV+S L I+ G S
Sbjct: 167 DACGKSAAQVRSSYRECGDLGTVAQQARVVQPTMFKPKPLTVRDVFSTLQAIAQAEGKDS 226
Query: 846 TARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQAVVMNSSLEFSHEG 905
+K LI ++ +C+ E K+L+R+L LRIG +T+L AL++A+ L H+G
Sbjct: 227 QGKKIRLIKKMLTACQGMEAKYLIRSLESKLRIGLAEKTVLVALSKAI-----LTHEHDG 281
Query: 906 KMENLKEKLQSLSAAAVEAYNXXXXXXXXXXXXMNKGIGFSASTLSMVPGVPIKPMLAKI 965
K E E++ + A + + + GI + PG+P+KPMLAK
Sbjct: 282 K-EPSPEQVDAAEALVRDTFCQVPNYEMIINAALQYGIMNLPQHCVLTPGIPLKPMLAKP 340
Query: 966 TNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINE 1025
T + +VL FQ + FTCEYKYDG+RAQ+H + DGT+RI+SRN + T R+P+ I
Sbjct: 341 TKSITEVLDRFQGQRFTCEYKYDGERAQVHLMEDGTIRIYSRNSENMTERYPE-IQFHQF 399
Query: 1026 FCKP-AAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFD 1084
P + I+D E VA D + KI+ FQ LS+R+R G + +K VKV +C+F FD
Sbjct: 400 LANPQTTRSLIIDCEAVAWDNEKQ-KILPFQVLSTRKRKG----VELKDVKVRVCLFAFD 454
Query: 1085 IMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNF 1144
+++ NGE LL +L RRK+L + G Q+A E+T + LS++ +
Sbjct: 455 LLYLNGESLLKCSLADRRKHLYSVL-KVVPGELQFANEITT----------MELSELQTY 503
Query: 1145 LEEALHSSCEGIIVKSLD-VDAGYSPSKRSDSW 1176
LE+++ +SCEG++VK LD ++ Y PSKRS +W
Sbjct: 504 LEQSVSASCEGLMVKMLDGEESQYEPSKRSRNW 536
Score = 40 (19.1 bits), Expect = 9.4e-74, Sum P(2) = 9.4e-74
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 1147 EALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
++LH+ + ++ + D Y S D W
Sbjct: 600 QSLHAQLKDTVIAAPRGDVSYDDSSPPDVW 629
>POMBASE|SPAC20G8.01 [details] [associations]
symbol:cdc17 "ATP-dependent DNA ligase Cdc17"
species:4896 "Schizosaccharomyces pombe" [GO:0000723 "telomere
maintenance" evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003909 "DNA ligase activity" evidence=IMP;IDA] [GO:0003910
"DNA ligase (ATP) activity" evidence=IGI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0006281 "DNA repair" evidence=IMP] [GO:0006284
"base-excision repair" evidence=ISS] [GO:0006289
"nucleotide-excision repair" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] [GO:0007090 "regulation of S phase of
mitotic cell cycle" evidence=IMP] [GO:0033567 "DNA replication,
Okazaki fragment processing" evidence=IMP] [GO:0043137 "DNA
replication, removal of RNA primer" evidence=TAS] [GO:0043596
"nuclear replication fork" evidence=IC] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0051103 "DNA ligation involved in DNA
repair" evidence=IEA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 PomBase:SPAC20G8.01 GO:GO:0005739
GO:GO:0005524 EMBL:CU329670 GO:GO:0051301 GenomeReviews:CU329670_GR
GO:GO:0046872 GO:GO:0006284 GO:GO:0003677 GO:GO:0007049
GO:GO:0043596 GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0000723 GO:GO:0006289 GO:GO:0007090
GO:GO:0043137 eggNOG:COG1793 HOGENOM:HOG000036006 KO:K10747
OMA:AQVACLY GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 EMBL:X05107 PIR:A29066
RefSeq:NP_593318.2 ProteinModelPortal:P12000 STRING:P12000
EnsemblFungi:SPAC20G8.01.1 GeneID:2541849 KEGG:spo:SPAC20G8.01
OrthoDB:EOG4RV60K NextBio:20802937 Uniprot:P12000
Length = 768
Score = 692 (248.7 bits), Expect = 1.5e-72, Sum P(3) = 1.5e-72
Identities = 164/465 (35%), Positives = 248/465 (53%)
Query: 713 APYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENIE 772
A + + + F +E +++ + ++ F +L P D+L VYL NK+ ++ +E
Sbjct: 147 ATFAEMVKAFTKIENTSKRLEIIDIMGTYFFGILRDHPSDLLACVYLSINKLGPDYSGLE 206
Query: 773 LNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQXXXXXXXXXXIKDVYS 832
L IG S++ AI E+ G +I+ ++++GDLG VAQ RQ Q I ++
Sbjct: 207 LGIGESIIMKAIGESTGQTLQQIKLSFHKVGDLGLVAQTSRQNQPTMFKPAALTIPFLFD 266
Query: 833 MLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQA 892
L KI+ +G+ S RK +I L+ SC E K+L+R L LR+ +TIL ALA A
Sbjct: 267 SLKKIAQMSGNQSQNRKIGVIKRLLSSCEGAEPKYLIRALEGKLRLQLAEKTILVALANA 326
Query: 893 VVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNXXXXXXXXXXXXMNKGIGFSASTLSM 952
+ G+ + +++++ + Y + G+G T +
Sbjct: 327 TAQYHA---DKNGEKLSQQDRIEGEQILR-DVYCQLPSYDLIVPHLIEHGLGTLRETCKL 382
Query: 953 VPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDET 1012
PG+P KPMLAK T + +VL F AFTCEYKYDG+RAQ+H DG +FSRN +
Sbjct: 383 TPGIPTKPMLAKPTKQISEVLNTFDQAAFTCEYKYDGERAQVHFTEDGKFYVFSRNSENM 442
Query: 1013 TSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIK 1072
+ R+PD+ ++++ KP A +FILD E V DR KI+ FQ+L++R+R KD + I
Sbjct: 443 SVRYPDISVSVSKWKKPDARSFILDCEAVGWDRDEN-KILPFQKLATRKR--KD--VKIG 497
Query: 1073 SVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCL 1132
+KV C+F FDI++ NG+ LL L +RRK L +F G F +AK D
Sbjct: 498 DIKVRACLFAFDILYLNGQPLLETPLNERRKLLYSMF-QPSTGDFTFAKH----SDQK-- 550
Query: 1133 TSDVSLSKINNFLEEALHSSCEGIIVKSLD-VDAGYSPSKRSDSW 1176
S+ I FLEE++ SCEG++VK L+ D+ Y PSKRS W
Sbjct: 551 ----SIESIEEFLEESVKDSCEGLMVKMLEGPDSHYEPSKRSRHW 591
Score = 56 (24.8 bits), Expect = 1.5e-72, Sum P(3) = 1.5e-72
Identities = 26/90 (28%), Positives = 41/90 (45%)
Query: 525 TVTNNPKKKGKVPSKMESSGAKQPTITSFFNKLLPNMSQGDVVESKSEECPKDENPLQSN 584
T T N +++ + S+ + KQ T+ S + S D S P E PL+SN
Sbjct: 82 TGTQNVERENNIVSEAK----KQKTLGSSSSSSDAVSSNNDSGASTPIPLPIKEPPLESN 137
Query: 585 A----IK---TYGEEIDQFLKIINGNESLK 607
A +K T+ E + F KI N ++ L+
Sbjct: 138 ARNDKLKGHATFAEMVKAFTKIENTSKRLE 167
Score = 37 (18.1 bits), Expect = 1.5e-72, Sum P(3) = 1.5e-72
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 320 IHLVPYSEHSNYDE 333
+ LV S+H+N+D+
Sbjct: 68 VKLVDESKHNNHDD 81
>UNIPROTKB|Q0IWT4 [details] [associations]
symbol:Os10g0489200 "DNA ligase" species:39947 "Oryza
sativa Japonica Group" [GO:0003910 "DNA ligase (ATP) activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0005694
"chromosome" evidence=IBA] [GO:0005739 "mitochondrion"
evidence=IBA] [GO:0006266 "DNA ligation" evidence=IBA] [GO:0006273
"lagging strand elongation" evidence=IBA] [GO:0006289
"nucleotide-excision repair" evidence=IBA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005739
GO:GO:0005524 GO:GO:0005634 GO:GO:0005694 GO:GO:0003677
GO:GO:0006310 EMBL:AP008216 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0006289 GO:GO:0006273 KO:K10747 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 RefSeq:NP_001064917.1 UniGene:Os.50787
STRING:Q0IWT4 PRIDE:Q0IWT4 GeneID:4348965 KEGG:osa:4348965
Gramene:Q0IWT4 ProtClustDB:CLSN2919973 Uniprot:Q0IWT4
Length = 828
Score = 703 (252.5 bits), Expect = 5.2e-72, Sum P(3) = 5.2e-72
Identities = 170/497 (34%), Positives = 262/497 (52%)
Query: 638 KTVNRLEFSKSSVQSDSCNK--DCSSALEKIVSEELQHITDMS-------VQRPSKELMD 688
KT+ +KSS + K S K ++ E Q I S + P E D
Sbjct: 216 KTLGAKSDTKSSAEGVEKEKRRSPSPTKAKALASESQDIKKPSSPKKTKALDAPKSEEKD 275
Query: 689 PTL-VSLPPEKYDPIEHACWSSGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLA 747
TL + +++P+ A WS +P P++ LAR DL+ E G+I +L N+FR+++A
Sbjct: 276 TTLELKKKGSEFNPMAAAYWSPEEPVPFLFLARALDLISNESGRIVITEILSNVFRTVIA 335
Query: 748 LSPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGD 807
+P+D+L VYL N+IA HE EL IG + + A+ EA G ++ LGDLG
Sbjct: 336 TTPEDLLATVYLSANRIAPPHEGTELGIGDASIIRALAEAYGRREEHVKKNLKELGDLGL 395
Query: 808 VAQECRQTQXXXXXXXXXXIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKF 867
VA+ R +Q I V + I+ ++G S +K++ I L+ + + E ++
Sbjct: 396 VAKASRLSQKMMYKPKPLTISHVLAKFRTIAKESGKDSQDKKRNHIKGLLVAATDCEPQY 455
Query: 868 LVRTLVRNLRIGAMMRTILPALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNX 927
+ R L +RIG +T+ AL QA V + + S K+++ E+ + + Y+
Sbjct: 456 ITRLLQSKMRIGLAEKTVQMALGQAAVYSE--KHSPPSKIQSPFEEAAKIIK---QVYSV 510
Query: 928 XXXXXXXXXXXMNKGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKY 987
+ G+ S GVP+ PMLAK T V +++ FQ +TCEYKY
Sbjct: 511 LPIYDKIVPAILEVGVWKLPEICSFSIGVPVGPMLAKATKSVSEIIDKFQGLEYTCEYKY 570
Query: 988 DGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKN 1047
DG+RAQIH L DG+V I+SRN + T ++PD++ ++ F KP +F+LD E+VA DR+
Sbjct: 571 DGERAQIHCLEDGSVEIYSRNAERNTGKYPDVVDAVSRFRKPTVKSFVLDCEIVAYDREK 630
Query: 1048 GCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKD 1107
KI+ FQ LS+R R G +TI +KV +C F FDI++ NG+ LL L+ RR++L +
Sbjct: 631 K-KILPFQILSTRARKG----VTISDIKVSVCTFGFDILYINGKPLLQEQLKVRREHLYN 685
Query: 1108 LFYDEKMGYFQYAKEMT 1124
F +E G FQ A +T
Sbjct: 686 SF-EEVPGVFQLATSIT 701
Score = 504 (182.5 bits), Expect = 2.0e-44, Sum P(3) = 2.0e-44
Identities = 103/222 (46%), Positives = 148/222 (66%)
Query: 955 GVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTS 1014
GVP+ PMLAK T V +++ FQ +TCEYKYDG+RAQIH L DG+V I+SRN + T
Sbjct: 538 GVPVGPMLAKATKSVSEIIDKFQGLEYTCEYKYDGERAQIHCLEDGSVEIYSRNAERNTG 597
Query: 1015 RFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSV 1074
++PD++ ++ F KP +F+LD E+VA DR+ KI+ FQ LS+R R G +TI +
Sbjct: 598 KYPDVVDAVSRFRKPTVKSFVLDCEIVAYDREKK-KILPFQILSTRARKG----VTISDI 652
Query: 1075 KVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTS 1134
KV +C F FDI++ NG+ LL L+ RR++L + F +E G FQ A +T ++
Sbjct: 653 KVSVCTFGFDILYINGKPLLQEQLKVRREHLYNSF-EEVPGVFQLATSIT--------SN 703
Query: 1135 DVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
D L +I FL+ A++SSCEG+I+K+LD DA Y P+KRS++W
Sbjct: 704 D--LEEIQKFLDTAVNSSCEGLIIKTLDKDATYEPAKRSNNW 743
Score = 47 (21.6 bits), Expect = 2.0e-44, Sum P(3) = 2.0e-44
Identities = 16/63 (25%), Positives = 28/63 (44%)
Query: 502 QEYKLPTIKHSIKSTLSPSKRKKTVTNNPKKKGKVPSKMESS--GAKQPTITSFFNKLLP 559
Q+ K P+ K+ +P +K T KKKG + M ++ ++P F + L
Sbjct: 252 QDIKKPSSPKKTKALDAPKSEEKDTTLELKKKGSEFNPMAAAYWSPEEPVPFLFLARALD 311
Query: 560 NMS 562
+S
Sbjct: 312 LIS 314
Score = 39 (18.8 bits), Expect = 5.2e-72, Sum P(3) = 5.2e-72
Identities = 14/67 (20%), Positives = 31/67 (46%)
Query: 530 PKKKGKVPSKMESSGAKQPTITSFFNKLLPNMSQGDVVESKSEECPKDENPLQSNA-IKT 588
P++K P K + S + + + K +++ G E+K + PK L + + K+
Sbjct: 167 PEEKPHSPVKPKRSSSPTKSNSPGEGKRSESVAAGAKPEAKEKPSPKKPKTLGAKSDTKS 226
Query: 589 YGEEIDQ 595
E +++
Sbjct: 227 SAEGVEK 233
Score = 37 (18.1 bits), Expect = 5.2e-72, Sum P(3) = 5.2e-72
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 401 AGSGSNEGLSKEGEVKSKKTKA 422
AG+G+ +G K G+ K A
Sbjct: 77 AGAGAGKGKGKGGKSSGGKAAA 98
>CGD|CAL0006047 [details] [associations]
symbol:orf19.6155 species:5476 "Candida albicans" [GO:0003910
"DNA ligase (ATP) activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0000278
"mitotic cell cycle" evidence=IEA] [GO:0006266 "DNA ligation"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0007090 "regulation of S phase of mitotic cell
cycle" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0006273 "lagging strand elongation" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0000723 "telomere
maintenance" evidence=IEA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 CGD:CAL0006047 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0006310 EMBL:AACQ01000251
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG1793 KO:K10747 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574
RefSeq:XP_710637.1 ProteinModelPortal:Q59LP7 STRING:Q59LP7
GeneID:3647757 KEGG:cal:CaO19.6155 Uniprot:Q59LP7
Length = 770
Score = 685 (246.2 bits), Expect = 8.3e-70, Sum P(2) = 8.3e-70
Identities = 179/541 (33%), Positives = 288/541 (53%)
Query: 642 RLEFSKSSVQSDSCNKDCSSALEKIVSEELQHITDMSVQRPSKELMDPTLVSLPPEKYDP 701
R+E +KS S S + + +E E + + V+ ++EL + L + +
Sbjct: 94 RIE-TKSDESSSSSSSNGDIEMETEPKLEKNNGSGNDVRNEAEEL-----IKL--SESEQ 145
Query: 702 IEHACWSSGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSP-DDVLPAVYLC 760
+H+ G PY LA F+ +E E ++ ++++ F +L S D ++ VYLC
Sbjct: 146 AKHSNEKLGVKIPYAKLASVFEAIENESSRLAIIAIISQFFLEVLQQSTIDKLIRIVYLC 205
Query: 761 TNKIASNHE-NIELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQXXX 819
N++ ++E +EL +G +++ AI E G SKI+ Y GDLG +AQ+ R Q
Sbjct: 206 INRLGPDYEPGLELGLGETILIKAISECYGRETSKIKADYKSTGDLGLIAQKSRSLQPTM 265
Query: 820 XXXXXXXIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREK--EMKFLVRTLVRNLR 877
+ V+ KI+ TG S ++K S+I ++ +C+ K E KFL+R+L LR
Sbjct: 266 FKTAPLDVDTVFDNSLKIAKSTGKESQSKKISIIKQMLTACQMKSSEAKFLIRSLQGKLR 325
Query: 878 IGAMMRTILPALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNXXXXXXXXXXX 937
IG+ ++I+ LAQA V + E K++ KL EA++
Sbjct: 326 IGSAEKSIIVGLAQAFV---NYENKSNKKID--PSKLAEAEEIMKEAFSRVPNYEVVLKT 380
Query: 938 XMNKGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKL 997
GI + PG+P+KPMLA T + +VL FQN+ FTCEYKYDG RAQ+H L
Sbjct: 381 AYQYGIFNLLEHCFVTPGIPLKPMLANPTKSIGEVLDRFQNEEFTCEYKYDGVRAQVHIL 440
Query: 998 VDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAG-TFILDAEVVAIDRKNGCKIMSFQE 1056
DG++++FSRN ++ T +PDLISI +F + ILD E VA DR++ KI+ FQ+
Sbjct: 441 SDGSIKVFSRNLEDMTQTYPDLISIGKQFAVSGNTISMILDCEAVAWDREDH-KILPFQK 499
Query: 1057 LSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGY 1116
L++R+R KD + + +KV IC+F FD+++ + E LL +L +RRK +++ +
Sbjct: 500 LTTRKR--KD--VNEEDIKVQICLFAFDLLYYDNESLLPKSLAERRKIMQENLSPIE-DR 554
Query: 1117 FQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLD-VDAGYSPSKRSDS 1175
FQ+A S +L + FL++++ SCEG++VK L+ ++ Y PSKRS +
Sbjct: 555 FQFA---------TATNSSSNLEVLQQFLDQSIKDSCEGLMVKMLNGSESFYEPSKRSRN 605
Query: 1176 W 1176
W
Sbjct: 606 W 606
Score = 55 (24.4 bits), Expect = 8.3e-70, Sum P(2) = 8.3e-70
Identities = 21/80 (26%), Positives = 34/80 (42%)
Query: 515 STLSPSKRKKTVTNNPKKKGKVPSKMESSGAKQPTITSFFNKLLPNMSQGDVVESKSEEC 574
S+ + S KK T +K+ P K K T + S GD+ E ++E
Sbjct: 61 SSSNNSSPKKATTEAKQKREATPPKSPPRSKKARIETKSDESSSSSSSNGDI-EMETE-- 117
Query: 575 PK-DENPLQSNAIKTYGEEI 593
PK ++N N ++ EE+
Sbjct: 118 PKLEKNNGSGNDVRNEAEEL 137
>ASPGD|ASPL0000077573 [details] [associations]
symbol:AN4883 species:162425 "Emericella nidulans"
[GO:0003910 "DNA ligase (ATP) activity" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 GO:GO:0006310
EMBL:BN001303 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
EMBL:AACD01000084 GO:GO:0006289 GO:GO:0006273 eggNOG:COG1793
HOGENOM:HOG000036006 KO:K10747 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574 OMA:GAVKTTM
OrthoDB:EOG4SFDF2 RefSeq:XP_662487.1 ProteinModelPortal:Q5B3J7
EnsemblFungi:CADANIAT00005522 GeneID:2872686 KEGG:ani:AN4883.2
Uniprot:Q5B3J7
Length = 816
Score = 692 (248.7 bits), Expect = 5.2e-69, Sum P(2) = 5.2e-69
Identities = 198/610 (32%), Positives = 309/610 (50%)
Query: 567 VESKSEECPKDENPLQSNAIKTYGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALD 626
+ S +++ +D P +S A G+ Q K +E L A T E+ + ++A
Sbjct: 1 MSSPAKKRKRDTQPTRSIASFFQGQTAKQTEK----SEQLASLADT--EQHLSDEALARK 54
Query: 627 LYYD-NQEGDRGKTVNRLEFSKSSVQSDSCNKDCSSALEKIVSEELQHITDMSVQRPSKE 685
L + N E D + S+ + S S KD K+ LQ T
Sbjct: 55 LQAEWNNEQDFASPAT-VPHSEPTAASPSPEKDREQKKAKVGVLSLQSSTGTEDTISLSV 113
Query: 686 LMDPTLVSLPPEKYDPIEHACWSS-GQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRS 744
D + + +Y A WS+ G A Y L R F L + +IK + L N R
Sbjct: 114 PFDQSPLVFDSSRYAGELKAHWSAEGGNASYALLTRAFVLANSTTSRIKIVDTLVNFLRV 173
Query: 745 LLALSPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGD 804
L+ P VLPAV+L TN I+ + +EL +GGS ++ A ++ G N ++ +Y+RLGD
Sbjct: 174 LIEGDPSSVLPAVWLATNSISPPYHELELGLGGSSISKAFKKIYGLNSQGLKSLYDRLGD 233
Query: 805 LGDVAQECRQTQXXXXXXXX-XXIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCR-E 862
GDVA E ++ Q IK VY L KI++ GSGS K+ ++ L+ R
Sbjct: 234 AGDVAFEAKKRQSFTLIKPKPLSIKGVYQSLIKIAMSKGSGSQELKQRIVEKLLQDTRGA 293
Query: 863 KEMKFLVRTLVRNLRIGAMMRTILPALAQAVVM----NSSLEFSHEGKMENLK-EKLQSL 917
+E +++VRTLV+NLRIGA+ T+L ALA+A ++ N++ + ++ LK E+L +
Sbjct: 294 EESRYIVRTLVQNLRIGAVKTTMLIALARAFLVSKPDNATFTVHSQHELARLKKEELAEI 353
Query: 918 SAAAVEAYNXXXXXXXXXXXXMN--KGIGFSASTL---SMVPGVPIKPMLAKITNGVPQV 972
++A E + IG + L + +P+ PML IT + ++
Sbjct: 354 YSSAEELVKASYARHPNYNDLVPCLLEIGVTEELLLRCGLQLHIPLMPMLGSITRDLSEM 413
Query: 973 LKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAG 1032
L Q + FTCE+KYDGQRAQ+H G V IFSR+ +E T ++PDL+S++ +
Sbjct: 414 LTKLQGRDFTCEFKYDGQRAQVHCDEAGKVSIFSRHLEEMTEKYPDLVSLVPQIRGEGVS 473
Query: 1033 TFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQ 1092
+FIL+ EVVA+D+ NG ++ FQ L++R + D I +K+++C+F FD+M+ NG
Sbjct: 474 SFILEGEVVAVDQ-NG-ELQPFQILTNRAKKNVD----IGEIKINVCLFAFDLMYLNGAP 527
Query: 1093 LLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSS 1152
LL +LR+RR+ L+ LF E F + K + D S+ L +F + A +
Sbjct: 528 LLERSLRERRELLRSLFM-EIPNRFTWVKSLDATSAD----SEAVL----DFFKSATENK 578
Query: 1153 CEGIIVKSLD 1162
CEGI+VK LD
Sbjct: 579 CEGIMVKVLD 588
Score = 40 (19.1 bits), Expect = 5.2e-69, Sum P(2) = 5.2e-69
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 1165 AGYSPSKRSDSW 1176
+ Y P KR +SW
Sbjct: 625 SSYEPDKRLESW 636
>UNIPROTKB|Q5B3J7 [details] [associations]
symbol:AN4883.2 "DNA ligase" species:227321 "Aspergillus
nidulans FGSC A4" [GO:0003910 "DNA ligase (ATP) activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0005694
"chromosome" evidence=IBA] [GO:0006266 "DNA ligation" evidence=IBA]
[GO:0006273 "lagging strand elongation" evidence=IBA] [GO:0006289
"nucleotide-excision repair" evidence=IBA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524 GO:GO:0005634
GO:GO:0005694 GO:GO:0003677 GO:GO:0006310 EMBL:BN001303
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
EMBL:AACD01000084 GO:GO:0006289 GO:GO:0006273 eggNOG:COG1793
HOGENOM:HOG000036006 KO:K10747 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574 OMA:GAVKTTM
OrthoDB:EOG4SFDF2 RefSeq:XP_662487.1 ProteinModelPortal:Q5B3J7
EnsemblFungi:CADANIAT00005522 GeneID:2872686 KEGG:ani:AN4883.2
Uniprot:Q5B3J7
Length = 816
Score = 692 (248.7 bits), Expect = 5.2e-69, Sum P(2) = 5.2e-69
Identities = 198/610 (32%), Positives = 309/610 (50%)
Query: 567 VESKSEECPKDENPLQSNAIKTYGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALD 626
+ S +++ +D P +S A G+ Q K +E L A T E+ + ++A
Sbjct: 1 MSSPAKKRKRDTQPTRSIASFFQGQTAKQTEK----SEQLASLADT--EQHLSDEALARK 54
Query: 627 LYYD-NQEGDRGKTVNRLEFSKSSVQSDSCNKDCSSALEKIVSEELQHITDMSVQRPSKE 685
L + N E D + S+ + S S KD K+ LQ T
Sbjct: 55 LQAEWNNEQDFASPAT-VPHSEPTAASPSPEKDREQKKAKVGVLSLQSSTGTEDTISLSV 113
Query: 686 LMDPTLVSLPPEKYDPIEHACWSS-GQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRS 744
D + + +Y A WS+ G A Y L R F L + +IK + L N R
Sbjct: 114 PFDQSPLVFDSSRYAGELKAHWSAEGGNASYALLTRAFVLANSTTSRIKIVDTLVNFLRV 173
Query: 745 LLALSPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGD 804
L+ P VLPAV+L TN I+ + +EL +GGS ++ A ++ G N ++ +Y+RLGD
Sbjct: 174 LIEGDPSSVLPAVWLATNSISPPYHELELGLGGSSISKAFKKIYGLNSQGLKSLYDRLGD 233
Query: 805 LGDVAQECRQTQXXXXXXXX-XXIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCR-E 862
GDVA E ++ Q IK VY L KI++ GSGS K+ ++ L+ R
Sbjct: 234 AGDVAFEAKKRQSFTLIKPKPLSIKGVYQSLIKIAMSKGSGSQELKQRIVEKLLQDTRGA 293
Query: 863 KEMKFLVRTLVRNLRIGAMMRTILPALAQAVVM----NSSLEFSHEGKMENLK-EKLQSL 917
+E +++VRTLV+NLRIGA+ T+L ALA+A ++ N++ + ++ LK E+L +
Sbjct: 294 EESRYIVRTLVQNLRIGAVKTTMLIALARAFLVSKPDNATFTVHSQHELARLKKEELAEI 353
Query: 918 SAAAVEAYNXXXXXXXXXXXXMN--KGIGFSASTL---SMVPGVPIKPMLAKITNGVPQV 972
++A E + IG + L + +P+ PML IT + ++
Sbjct: 354 YSSAEELVKASYARHPNYNDLVPCLLEIGVTEELLLRCGLQLHIPLMPMLGSITRDLSEM 413
Query: 973 LKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAG 1032
L Q + FTCE+KYDGQRAQ+H G V IFSR+ +E T ++PDL+S++ +
Sbjct: 414 LTKLQGRDFTCEFKYDGQRAQVHCDEAGKVSIFSRHLEEMTEKYPDLVSLVPQIRGEGVS 473
Query: 1033 TFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQ 1092
+FIL+ EVVA+D+ NG ++ FQ L++R + D I +K+++C+F FD+M+ NG
Sbjct: 474 SFILEGEVVAVDQ-NG-ELQPFQILTNRAKKNVD----IGEIKINVCLFAFDLMYLNGAP 527
Query: 1093 LLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSS 1152
LL +LR+RR+ L+ LF E F + K + D S+ L +F + A +
Sbjct: 528 LLERSLRERRELLRSLFM-EIPNRFTWVKSLDATSAD----SEAVL----DFFKSATENK 578
Query: 1153 CEGIIVKSLD 1162
CEGI+VK LD
Sbjct: 579 CEGIMVKVLD 588
Score = 40 (19.1 bits), Expect = 5.2e-69, Sum P(2) = 5.2e-69
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 1165 AGYSPSKRSDSW 1176
+ Y P KR +SW
Sbjct: 625 SSYEPDKRLESW 636
>UNIPROTKB|A8JH25 [details] [associations]
symbol:LIG1 "DNA ligase" species:3055 "Chlamydomonas
reinhardtii" [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0005694 "chromosome"
evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA] [GO:0006266
"DNA ligation" evidence=IBA] [GO:0006273 "lagging strand
elongation" evidence=IBA] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006289
GO:GO:0006273 eggNOG:COG1793 KO:K10747 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574
EMBL:DS496188 RefSeq:XP_001702891.1 UniGene:Cre.3193
ProteinModelPortal:A8JH25 STRING:A8JH25 EnsemblPlants:EDO96848
GeneID:5728431 KEGG:cre:CHLREDRAFT_133143 ProtClustDB:CLSN2924027
BioCyc:CHLAMY:CHLREDRAFT_133143-MONOMER Uniprot:A8JH25
Length = 813
Score = 704 (252.9 bits), Expect = 9.2e-69, P = 9.2e-69
Identities = 168/456 (36%), Positives = 248/456 (54%)
Query: 707 WSSGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIAS 766
W GQP PY LA TF+ + +++ +++L + FR++LA +P D+LPAVYLC N++A
Sbjct: 191 WKEGQPVPYSLLANTFEAIAGTTKRLEIVALLVSAFRAILATNPPDLLPAVYLCVNRVAP 250
Query: 767 NHENIELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQXXXXXXXXXX 826
H IEL IG + + A+ EA G N + I+ Y GDLG V R TQ
Sbjct: 251 AHTGIELGIGEATLIKAMCEATGKNEASIKKSYEEHGDLGVVVVGARSTQRTMFAPPPLT 310
Query: 827 IKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTIL 886
I V I+ TG+ S +K+ +IV L+ + + E ++VR+L LRIG +++L
Sbjct: 311 IASVLKAFQNIAQTTGTKSGDQKRGMIVKLLVAAKGNEPGYIVRSLQAKLRIGLAEQSVL 370
Query: 887 PALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNXXXXXXXXXXXXMNKGIGFS 946
AL+ AV ++ + + L E L++ + +AY+ + G
Sbjct: 371 VALSHAVHLHRGGPAALKQPDVKLAEALEAGAQVVKQAYSECPSYDVLVPALLEHGSTDL 430
Query: 947 ASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDG-TVRIF 1005
S +PGVP+KPMLAK TNGV +VL+ F + FT EYKYDG+RAQ+H L G TV IF
Sbjct: 431 LSRCHFMPGVPVKPMLAKATNGVGEVLEKFTDIEFTVEYKYDGERAQVHVLDGGKTVHIF 490
Query: 1006 SRNGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGK 1065
SRN + T ++PD++S I KP + + DAE VA D + KI+ FQ LS+R R K
Sbjct: 491 SRNAENNTPKYPDIVSRIKGLLKPEVDSIVFDAEAVAYDPEKK-KILPFQVLSTRAR--K 547
Query: 1066 DSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTV 1125
D + + +KV + +F FD ++ NG+ LL L +RR L EK G YA T
Sbjct: 548 D--VAVDDIKVQVVLFAFDCLYLNGQSLLHKPLTERRAALYGSL-TEKEGELLYASYKT- 603
Query: 1126 EGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSL 1161
+ DV ++ +FL E++ + EG+IVK+L
Sbjct: 604 -------SRDVE--ELESFLNESVEAGTEGLIVKTL 630
Score = 142 (55.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 41/115 (35%), Positives = 59/115 (51%)
Query: 1062 RGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAK 1121
R KD + + +KV + +F FD ++ NG+ LL L +RR L EK G YA
Sbjct: 544 RARKD--VAVDDIKVQVVLFAFDCLYLNGQSLLHKPLTERRAALYGSL-TEKEGELLYAS 600
Query: 1122 EMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
T + DV ++ +FL E++ + EG+IVK+L D Y PSKRS W
Sbjct: 601 YKT--------SRDVE--ELESFLNESVEAGTEGLIVKTLG-DT-YEPSKRSSHW 643
>UNIPROTKB|H9L029 [details] [associations]
symbol:LIG1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003910 "DNA
ligase (ATP) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0051103 "DNA
ligation involved in DNA repair" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS50160 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 GeneTree:ENSGT00700000104556
EMBL:AADN02065151 EMBL:AADN02065152 EMBL:AADN02065153
Ensembl:ENSGALT00000021833 Uniprot:H9L029
Length = 654
Score = 702 (252.2 bits), Expect = 1.5e-68, P = 1.5e-68
Identities = 167/488 (34%), Positives = 264/488 (54%)
Query: 699 YDPIEHACWSSGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVY 758
Y P++ ACW G+ PY+ +ARTF+ +E ++K + +L N+ RS++ALSP ++LP +
Sbjct: 14 YHPVQDACWGHGRSVPYLAVARTFERIEEASSRLKIIEILTNLLRSVVALSPSELLPCLL 73
Query: 759 LCTNKIASNHENIELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQXX 818
LC N+ + E +EL IG +L+T A+ +A G ++IR GDLG VA+ R TQ
Sbjct: 74 LCLNRPGAPSEGLELGIGETLLTRALAQATGRQLAQIRSEAQDKGDLGLVAESSRCTQRT 133
Query: 819 XXXXXXXXIKDVYSMLCKISVQTGSGSTARKK--SLIVNLMCSCREKEMKFLVRTLVRNL 876
V L +++ +G+ + L+ L+C ++ F R+L L
Sbjct: 134 VVPPAPLSASGVLGKLREMAAMSGNAVSLGTMWVELVTFLLC---QRCCVFCSRSLSGKL 190
Query: 877 RIGAMMRTILPALAQAVVMNSS-----LEFSHEGKM---ENLKEKLQSLSAAAVEAYNXX 928
RIG +++L ALA A+ + L G+ + + L+ S + +
Sbjct: 191 RIGLAEQSVLTALAHAIALTPPGQEWPLAVVDAGQSMAPDARRTWLEEQSRILKQTFCEL 250
Query: 929 XXXXXXXXXXMNKGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYD 988
+ G+ + PGVP+KPMLA+ V ++LK F+ AFTCEYKYD
Sbjct: 251 PDYAAIVPVLLEHGLEQLPKHCGITPGVPLKPMLAQPARCVSELLKRFEEAAFTCEYKYD 310
Query: 989 GQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNG 1048
G+R QIH L G V I+SRN + TTS++PDL+ I + KP + ILDAE VA D+
Sbjct: 311 GERTQIHVLESGAVFIYSRNQENTTSKYPDLVQRIPKMLKPGVRSCILDAEAVAWDKVTK 370
Query: 1049 CKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDL 1108
++ FQ L +R+R KD + ++KV +CV+ FD+++ NGE L+ L RR+ L+
Sbjct: 371 -QLQPFQVLMTRKR--KD--VDAAAIKVQVCVYAFDLLYLNGEPLVREPLATRRQLLRQS 425
Query: 1109 FYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYS 1168
F +E G F +A M D ++++FL++A+ +SCEG++VK+L+V+A Y
Sbjct: 426 F-EEVEGEFLFATSMDTRSAD----------EVSDFLDKAIKASCEGLMVKTLEVEATYE 474
Query: 1169 PSKRSDSW 1176
+KRS W
Sbjct: 475 IAKRSHKW 482
>POMBASE|SPBC713.06 [details] [associations]
symbol:adl1 "DNA ligase (predicted)" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003910 "DNA ligase (ATP) activity" evidence=ISM] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0007165 "signal transduction"
evidence=IEA] [GO:0051103 "DNA ligation involved in DNA repair"
evidence=IEA] [GO:0071897 "DNA biosynthetic process" evidence=IC]
InterPro:IPR000014 InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 SMART:SM00091 PomBase:SPBC713.06
GO:GO:0005524 GO:GO:0005634 GO:GO:0007165 GO:GO:0003677
GO:GO:0006260 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG1793 HOGENOM:HOG000036006 KO:K10747 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 HSSP:P18858 RefSeq:NP_595345.1
ProteinModelPortal:Q9C1W9 STRING:Q9C1W9 EnsemblFungi:SPBC713.06.1
GeneID:2541111 KEGG:spo:SPBC713.06 OMA:GAVKTTM OrthoDB:EOG4SFDF2
NextBio:20802224 GO:GO:0071897 Uniprot:Q9C1W9
Length = 774
Score = 667 (239.9 bits), Expect = 5.1e-68, Sum P(3) = 5.1e-68
Identities = 151/462 (32%), Positives = 253/462 (54%)
Query: 715 YIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENIELN 774
Y LA TF L+ + + +I+ +++L N +LL PD ++ V+LCTN IA N L
Sbjct: 162 YSSLANTFSLISSTKSRIRIVTLLTNFLLTLLYADPDSLIATVWLCTNSIAPNFYGKNLG 221
Query: 775 IGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQXXXXXXXXXXIKDVYSML 834
+G ++ + A++E CG S +++++N+ GD GDVA E + + IK VYS L
Sbjct: 222 VGPAMYSKALKEVCGITASALKNLWNKYGDPGDVAFEAKVSVRTLSRPEPLTIKKVYSTL 281
Query: 835 CKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQAVV 894
KI+ G+G+ RK L L+ S +E++++ R++++NLRIGA+ T+L +L++A
Sbjct: 282 LKIADSNGNGAQNRKLELTKFLLISSNAEEVRYIGRSIMQNLRIGAVQNTMLASLSKAFF 341
Query: 895 MNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNXXXXXXXXXXXXMNKGIGFSASTLSMVP 954
+ + ++L+++ + +++ + +GI +S+ P
Sbjct: 342 IFDNQNEIFNFNSDSLQQQFRQGEEIVKQSFFQVPDYNILVATLLREGIENLKDNMSIRP 401
Query: 955 GVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTS 1014
G+P+KPML IT + +L+ + F+CE+KYDGQRAQIH G ++IFSR+ +E T
Sbjct: 402 GIPVKPMLGSITKNLQHMLERLTDHNFSCEFKYDGQRAQIHCDRLGNIKIFSRHLEEITG 461
Query: 1015 RFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSV 1074
RFPD+I + K + FI++ E+VAID+ NG +I+ FQ+LS+RER +T+ +
Sbjct: 462 RFPDVIEVAQLALKHSCD-FIIEGELVAIDKSNG-QILDFQKLSTRER----KKVTVADI 515
Query: 1075 KVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTS 1134
+D+CVFVFDIMF +G+ L L +RR+ + F + FQ+ + ++ +
Sbjct: 516 TIDVCVFVFDIMFCDGKSCLQMPLIERRRMFFEHF-NLIPNRFQFVSSLETN-EEQSIQE 573
Query: 1135 DVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
SL+ I N E + G K + Y P KR + W
Sbjct: 574 FFSLA-ITNKCEGLMVKVLNGTNSK---FPSTYEPDKRGEGW 611
Score = 40 (19.1 bits), Expect = 5.1e-68, Sum P(3) = 5.1e-68
Identities = 13/56 (23%), Positives = 24/56 (42%)
Query: 632 QEGDRGKT--VNRLEFSKSSVQSDSCNKDCSSALEKIVSEELQHITDMSVQRPSKE 685
+ D+ K V E S +DS NKD + + + + L ++ + SK+
Sbjct: 101 ESNDKPKENLVTSEECKASFFSTDSVNKDSTIDYDALQKDPLTYVKSCRARFVSKD 156
Score = 37 (18.1 bits), Expect = 5.1e-68, Sum P(3) = 5.1e-68
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 483 RNIVDAVSNFYEHETQLYEQEYKLPT 508
RNI+ F + E QL + KL T
Sbjct: 24 RNIITIQDLFSKREAQLTDTPNKLLT 49
>SGD|S000002323 [details] [associations]
symbol:CDC9 "DNA ligase found in the nucleus and
mitochondria" species:4932 "Saccharomyces cerevisiae" [GO:0006260
"DNA replication" evidence=IEA] [GO:0000278 "mitotic cell cycle"
evidence=IMP] [GO:0006310 "DNA recombination" evidence=IEA;IMP]
[GO:0003910 "DNA ligase (ATP) activity" evidence=IEA;IDA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0006284 "base-excision
repair" evidence=IMP] [GO:0006266 "DNA ligation" evidence=IMP;IDA]
[GO:0006273 "lagging strand elongation" evidence=IDA;IMP]
[GO:0016874 "ligase activity" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IMP] [GO:0051301 "cell division" evidence=IEA] [GO:0005657
"replication fork" evidence=NAS] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005739 "mitochondrion" evidence=IEA;IMP;IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0051103 "DNA ligation
involved in DNA repair" evidence=IEA] [GO:0003909 "DNA ligase
activity" evidence=IEA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 SGD:S000002323 GO:GO:0005739
GO:GO:0005524 GO:GO:0005634 GO:GO:0051301 GO:GO:0046872
GO:GO:0006284 GO:GO:0003677 EMBL:BK006938 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:Z67750
GO:GO:0006289 GO:GO:0000278 GO:GO:0005657 GO:GO:0006273
eggNOG:COG1793 HOGENOM:HOG000036006 KO:K10747 OMA:AQVACLY
GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 GeneTree:ENSGT00700000104556 OrthoDB:EOG4RV60K
EMBL:X03246 EMBL:Z74212 EMBL:AY723764 EMBL:X68020 PIR:S61049
RefSeq:NP_010117.1 PDB:2OD8 PDBsum:2OD8 ProteinModelPortal:P04819
SMR:P04819 DIP:DIP-5630N IntAct:P04819 MINT:MINT-499551
STRING:P04819 PaxDb:P04819 PeptideAtlas:P04819 EnsemblFungi:YDL164C
GeneID:851391 KEGG:sce:YDL164C CYGD:YDL164c
EvolutionaryTrace:P04819 NextBio:968546 Genevestigator:P04819
GermOnline:YDL164C Uniprot:P04819
Length = 755
Score = 683 (245.5 bits), Expect = 5.3e-68, Sum P(2) = 5.3e-68
Identities = 159/467 (34%), Positives = 261/467 (55%)
Query: 714 PYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHE-NIE 772
PY + F+ +EA +++ + + + F ++ S +++P YL N++ ++E +E
Sbjct: 147 PYSEVCEVFNKIEAISSRLEIIRICSDFFIKIMKQSSKNLIPTTYLFINRLGPDYEAGLE 206
Query: 773 LNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQXXXXXXXXXXIKDVYS 832
L +G +L+ I E CG + S+I+ Y +GDLG++A R Q + +V+
Sbjct: 207 LGLGENLLMKTISETCGKSMSQIKLKYKDIGDLGEIAMGARNVQPTMFKPKPLTVGEVFK 266
Query: 833 MLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQA 892
L I+ G S +K LI ++ +C+ E KFL+R+L LRIG +T+L +L++A
Sbjct: 267 NLRAIAKTQGKDSQLKKMKLIKRMLTACKGIEAKFLIRSLESKLRIGLAEKTVLISLSKA 326
Query: 893 VVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNXXXXXXXXXXXXMNKGIGFSASTLSM 952
++++ K + + L+S +A+ + GI ++
Sbjct: 327 LLLHDENREDSPDKDVPM-DVLESAQQKIRDAFCQVPNYEIVINSCLEHGIMNLDKYCTL 385
Query: 953 VPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDET 1012
PG+P+KPMLAK T + +VL FQ + FT EYKYDG+RAQ+H L DGT+RI+SRNG+
Sbjct: 386 RPGIPLKPMLAKPTKAINEVLDRFQGETFTSEYKYDGERAQVHLLNDGTMRIYSRNGENM 445
Query: 1013 TSRFPDLISIINEFCKPAAGT--FILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVIT 1070
T R+P++ I +F + T ILD E VA D+ G KI+ FQ LS+R+R KD +
Sbjct: 446 TERYPEIN--ITDFIQDLDTTKNLILDCEAVAWDKDQG-KILPFQVLSTRKR--KD--VE 498
Query: 1071 IKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDN 1130
+ VKV +C+F FDI+ N E+L+ +L++RR+YL + G FQYA ++T
Sbjct: 499 LNDVKVKVCLFAFDILCYNDERLINKSLKERREYLTKVT-KVVPGEFQYATQITTN---- 553
Query: 1131 CLTSDVSLSKINNFLEEALHSSCEGIIVKSLD-VDAGYSPSKRSDSW 1176
+L ++ FL+E+++ SCEG++VK L+ ++ Y PSKRS +W
Sbjct: 554 ------NLDELQKFLDESVNHSCEGLMVKMLEGPESHYEPSKRSRNW 594
Score = 40 (19.1 bits), Expect = 5.3e-68, Sum P(2) = 5.3e-68
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 538 SKMESSGAKQP---TITSFFNKLLPNMSQGDVVESKSEE 573
S + SS K+P T+ FF + ++G KS +
Sbjct: 26 SSLPSSAGKKPKQATLARFFTSMKNKPTEGTPSPKKSSK 64
Score = 39 (18.8 bits), Expect = 6.8e-68, Sum P(2) = 6.8e-68
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 339 KFLKPKRVIPTVGMDIEKLDSKHANKMRKYFAGLVDEMASKK 380
+F + PT G K SKH + R +E A+KK
Sbjct: 43 RFFTSMKNKPTEGTPSPKKSSKHMLEDRMDNVSGEEEYATKK 84
>UNIPROTKB|G4NHG0 [details] [associations]
symbol:MGG_03854 "DNA ligase" species:242507 "Magnaporthe
oryzae 70-15" [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0006310 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:CM001236 KO:K10747
GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 RefSeq:XP_003720037.1 ProteinModelPortal:G4NHG0
EnsemblFungi:MGG_03854T0 GeneID:2677295 KEGG:mgr:MGG_03854
Uniprot:G4NHG0
Length = 859
Score = 637 (229.3 bits), Expect = 1.7e-65, Sum P(3) = 1.7e-65
Identities = 162/471 (34%), Positives = 254/471 (53%)
Query: 705 ACWSS-GQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNK 763
A W++ G A Y L R F LV A +IK + L N R L+ PD +LPAV+L TN
Sbjct: 158 AHWNAEGGNASYAILTRCFVLVSATTSRIKIVDTLVNCLRILIEADPDSLLPAVWLATNS 217
Query: 764 IASNHENIELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQXXXXXXX 823
I+ + ++EL +GGS ++ A+++ CG + ++ +Y++ GD GDVA E ++ Q
Sbjct: 218 ISPPYISLELGLGGSAISKALKQVCGLDSRSLKAIYDKHGDPGDVAFEAKKKQNFTLRKP 277
Query: 824 X-XXIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCRE-KEMKFLVRTLVRNLRIGAM 881
IK V+ L KI+ G GS K+ ++ L+ R +E +F+VRTL ++LRIGA+
Sbjct: 278 KPLTIKGVFQSLVKIAQSQGQGSVNVKQQIVDRLLQDARGGEESRFIVRTLCQHLRIGAV 337
Query: 882 MRTILPALAQAVVMN----SSLEFSHEGKMENLK-EKLQSLSAAAVEAYNXXXXXXXXXX 936
T+L AL++A +++ + E ++ LK E+L + A E
Sbjct: 338 KTTMLIALSRAFLLSKPYGADFETRDTKELARLKKEELAEVWARGEELVKACFARRPNYN 397
Query: 937 XXMNK--GIGFSASTL---SMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQR 991
+ IG + L + +P++PML IT + ++L Q + F CE+KYDGQR
Sbjct: 398 DLVPVLLEIGITDELLVRCGLAIHIPLRPMLGSITRDLSEMLTKLQGRDFACEFKYDGQR 457
Query: 992 AQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKI 1051
AQ+H +G V IFSR+ + T ++PDL+++I + +FIL+ EVVA+D G +
Sbjct: 458 AQVHCDENGKVSIFSRHLELMTDKYPDLVALIPKIRGEGVSSFILEGEVVAVDSTTG-DL 516
Query: 1052 MSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYD 1111
+FQ L++R R KD + I S+ V++C+F FD+M NG+ LL R+RR+ LK LF +
Sbjct: 517 KNFQTLTNRAR--KD--VEIGSITVNVCLFAFDLMLLNGQPLLNRPFRERRELLKSLFIE 572
Query: 1112 EKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLD 1162
F + K + D S+ L F + A CEG++VK LD
Sbjct: 573 VPHN-FTWVKSIDATSQD----SEAVLE----FFKAATDQKCEGLMVKILD 614
Score = 45 (20.9 bits), Expect = 1.7e-65, Sum P(3) = 1.7e-65
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 1165 AGYSPSKRSDSW 1176
A Y P KR DSW
Sbjct: 667 ATYEPDKRLDSW 678
Score = 40 (19.1 bits), Expect = 1.7e-65, Sum P(3) = 1.7e-65
Identities = 19/79 (24%), Positives = 35/79 (44%)
Query: 527 TNNPKKKGKVPSKMESSGAKQPTITSFFNKLLPNMSQGDVVESKSEECPKDENPLQSNAI 586
T+NP G + + ++ K T+T L +++ + ++ S P DE+PL N +
Sbjct: 100 TDNPLADGSALT-VTANSTKTNTLT------LQSVASAE--DTISSVIPLDESPLAFN-V 149
Query: 587 KTYGEEIDQFLKIINGNES 605
Y ++ GN S
Sbjct: 150 SEYITKLKAHWNAEGGNAS 168
>TAIR|locus:2010207 [details] [associations]
symbol:AT1G49250 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003909 "DNA ligase
activity" evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IEA;ISS;IBA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM;IBA] [GO:0005739 "mitochondrion"
evidence=IBA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006266 "DNA ligation" evidence=IBA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0051103 "DNA ligation involved in DNA repair" evidence=IEA]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160
EMBL:CP002684 GO:GO:0005739 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006260 GO:GO:0006310 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 KO:K10747 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 OMA:PAFENTT IPI:IPI00521723 RefSeq:NP_175351.1
UniGene:At.52091 ProteinModelPortal:F4I1P7 SMR:F4I1P7 PRIDE:F4I1P7
EnsemblPlants:AT1G49250.1 GeneID:841349 KEGG:ath:AT1G49250
PhylomeDB:F4I1P7 Uniprot:F4I1P7
Length = 657
Score = 673 (242.0 bits), Expect = 2.2e-65, P = 2.2e-65
Identities = 150/398 (37%), Positives = 220/398 (55%)
Query: 728 ERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENIELNIG-GSLVTSAIEE 786
E G+I +LCNM R+++A +PDD+LP VYL N+IA HE I+L +G GS + AI E
Sbjct: 58 ESGRIVITHILCNMLRTVIATTPDDLLPTVYLAANEIAPAHEGIKLGMGKGSYIIKAISE 117
Query: 787 ACGTNRSKIRDMYNRLGDLGDVAQECRQTQXXXXXXXXXXIKDVYSMLCKISVQTGSGST 846
A G S + Y +LGDLG VA R +Q + V L I+ ++G GS
Sbjct: 118 AFGRTESHVEQQYTQLGDLGLVANGSRSSQTMIFMPKPLTVVKVADTLRLIAKESGKGSK 177
Query: 847 ARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQAVVMNSSLEFSHEGK 906
+KK L+ L+ + + E +L R L NLR+G +T+L AL QA V N H
Sbjct: 178 DKKKDLMKALLVATTDCEPLYLTRLLQDNLRLGFSRQTVLAALGQAAVYNEE----HSKP 233
Query: 907 MENLKEKLQSLSAAAVEAYNXXXXXXXXXXXXMNKGIGFSASTLSMVPGVPIKPMLAKIT 966
N+K L + E ++ + G+ T ++ GVP++PMLAK T
Sbjct: 234 PPNIKNPLDEAATIVKEVFSMLPVYDIIVGALLTSGVWNLPKTCNLTLGVPVRPMLAKAT 293
Query: 967 NGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEF 1026
V +L+ F++ FT EYKYDG+RAQI+ + DGTV IFSR+ + T ++PD+ +++
Sbjct: 294 TRVDLILEKFKDTVFTAEYKYDGERAQIYYMEDGTVEIFSRHAERNTGKYPDVALVLSRL 353
Query: 1027 CKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIM 1086
KP +FILD EVV +R+ KI+ Q R K+ + + +KV +CVF FDI+
Sbjct: 354 KKPTVKSFILDCEVVTFNREKE-KILPLQST----RAHKN--VNVSDIKVGVCVFAFDIL 406
Query: 1087 FANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMT 1124
+ NG+ L+ L RR+ L D F +E +GYFQ+A +T
Sbjct: 407 YLNGQLLIHENLNIRREKLHDSF-EEDLGYFQFATALT 443
Score = 200 (75.5 bits), Expect = 4.6e-12, P = 4.6e-12
Identities = 40/108 (37%), Positives = 68/108 (62%)
Query: 1069 ITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGD 1128
+ + +KV +CVF FDI++ NG+ L+ L RR+ L D F +E +GYFQ+A +T
Sbjct: 389 VNVSDIKVGVCVFAFDILYLNGQLLIHENLNIRREKLHDSF-EEDLGYFQFATALT---- 443
Query: 1129 DNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
++D+ ++ FL+ ++ CEG+++KSL +A Y P+KRS++W
Sbjct: 444 ----SNDIG--ELQEFLKASIDIGCEGLMIKSLYSNATYEPAKRSNNW 485
>FB|FBgn0262619 [details] [associations]
symbol:DNA-ligI "DNA ligase I" species:7227 "Drosophila
melanogaster" [GO:0003910 "DNA ligase (ATP) activity"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0051103
"DNA ligation involved in DNA repair" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0043596 "nuclear replication
fork" evidence=IDA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 EMBL:AE013599 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0051301 GO:GO:0003677
GO:GO:0006260 GO:GO:0007049 GO:GO:0006310 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 eggNOG:COG1793 KO:K10747
OMA:AQVACLY GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 GeneTree:ENSGT00700000104556
HSSP:P18858 EMBL:AY051939 EMBL:BT016103 RefSeq:NP_611843.2
UniGene:Dm.19278 ProteinModelPortal:Q9W1H4 SMR:Q9W1H4 IntAct:Q9W1H4
MINT:MINT-920323 STRING:Q9W1H4 PaxDb:Q9W1H4
EnsemblMetazoa:FBtr0072132 GeneID:37791 KEGG:dme:Dmel_CG5602
UCSC:CG5602-RA CTD:37791 FlyBase:FBgn0262619 InParanoid:Q9W1H4
OrthoDB:EOG48W9H3 PhylomeDB:Q9W1H4 GenomeRNAi:37791 NextBio:805425
Bgee:Q9W1H4 Uniprot:Q9W1H4
Length = 747
Score = 653 (234.9 bits), Expect = 3.3e-65, Sum P(2) = 3.3e-65
Identities = 144/436 (33%), Positives = 245/436 (56%)
Query: 697 EKYDPIEHACWSSGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPA 756
+ Y P+++A W + PY+ LARTF ++E +G++K + L N F S++ +SP+D++P+
Sbjct: 109 DSYHPLKNAYWKDKKVTPYLALARTFQVIEETKGRLKMIDTLSNFFCSVMLVSPEDLVPS 168
Query: 757 VYLCTNKIASNHENIELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQ 816
VYL N++A +E +EL + + + AI +A G N + I+ GDLG VA++ R +Q
Sbjct: 169 VYLSINQLAPAYEGLELGVAETTLMKAICKATGRNLAHIKSQTQLTGDLGIVAEQSRVSQ 228
Query: 817 XXXXXXXXXXIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNL 876
++DV+ L +I+ +G K L+ N+ +CR E +F +R+L+ L
Sbjct: 229 RMMFQPAPLNVRDVFRKLREIAKLSGQS----KMDLVYNMFVACRSSEARFFIRSLIGKL 284
Query: 877 RIGAMMRTILPALAQAVVMNSSLEFSHEGKMENL-KEKLQSLSAAAVEAYNXXXXXXXXX 935
RIG +++L ALA +V + ++ K+ ++ K+++ + AY
Sbjct: 285 RIGIAEQSLLTALAIGLVKKNHIDDCKASKVPDVYKDEIVDTTLLLKTAYCQCPNYDIII 344
Query: 936 XXXMNKGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIH 995
+ I M PG+P++PMLA+ T GV +V + F TCE+KYDG+RAQIH
Sbjct: 345 PAILKYDIKELQERCPMHPGMPLRPMLAQPTKGVHEVFERFGGMQITCEWKYDGERAQIH 404
Query: 996 KLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILDAEVVA--IDRKNGCKIMS 1053
+ G + IFSRN + T+++PDLI+ K ++I+D+E+VA ++RK +I+
Sbjct: 405 RNEKGEISIFSRNSENNTAKYPDLIARSTALLKGDVKSYIIDSEIVAWDVERK---QILP 461
Query: 1054 FQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEK 1113
FQ LS+R+R D I+ +KV +CV++FD+++ NG L+ L +RRK L + F E
Sbjct: 462 FQVLSTRKRKNVD----IEEIKVQVCVYIFDLLYINGTALVTKNLSERRKLLLEHF-QEV 516
Query: 1114 MGYFQYAKEMTVEGDD 1129
G +++A + D
Sbjct: 517 EGEWKFATALDTNDID 532
Score = 495 (179.3 bits), Expect = 2.8e-44, Sum P(2) = 2.8e-44
Identities = 112/329 (34%), Positives = 187/329 (56%)
Query: 849 KKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQAVVMNSSLEFSHEGKME 908
K L+ N+ +CR E +F +R+L+ LRIG +++L ALA +V + ++ K+
Sbjct: 257 KMDLVYNMFVACRSSEARFFIRSLIGKLRIGIAEQSLLTALAIGLVKKNHIDDCKASKVP 316
Query: 909 NL-KEKLQSLSAAAVEAYNXXXXXXXXXXXXMNKGIGFSASTLSMVPGVPIKPMLAKITN 967
++ K+++ + AY + I M PG+P++PMLA+ T
Sbjct: 317 DVYKDEIVDTTLLLKTAYCQCPNYDIIIPAILKYDIKELQERCPMHPGMPLRPMLAQPTK 376
Query: 968 GVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFC 1027
GV +V + F TCE+KYDG+RAQIH+ G + IFSRN + T+++PDLI+
Sbjct: 377 GVHEVFERFGGMQITCEWKYDGERAQIHRNEKGEISIFSRNSENNTAKYPDLIARSTALL 436
Query: 1028 KPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMF 1087
K ++I+D+E+VA D + +I+ FQ LS+R+R D I+ +KV +CV++FD+++
Sbjct: 437 KGDVKSYIIDSEIVAWDVERK-QILPFQVLSTRKRKNVD----IEEIKVQVCVYIFDLLY 491
Query: 1088 ANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEE 1147
NG L+ L +RRK L + F E G +++A + T+D+ ++ FLEE
Sbjct: 492 INGTALVTKNLSERRKLLLEHF-QEVEGEWKFATALD--------TNDID--EVQQFLEE 540
Query: 1148 ALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
++ +CEG++VK+LD +A Y +KRS +W
Sbjct: 541 SIKGNCEGLMVKTLDEEATYEIAKRSRNW 569
Score = 45 (20.9 bits), Expect = 3.3e-65, Sum P(2) = 3.3e-65
Identities = 21/82 (25%), Positives = 36/82 (43%)
Query: 514 KSTLSPSKRKKTVTNNPKKKGKVPS-KMESSGAKQPTITSFFNKLLPNMSQGDVVESKSE 572
KS S K+K T++P KVP ++ +P I S P VE S
Sbjct: 3 KSITSFFKKKSDATDSPSPPKKVPKIDAKTELPDEPHIKS--ESASPETKPK--VEPMSV 58
Query: 573 ECPKDENPLQSNAIKTYGEEID 594
+ + +P+++ +K +E+D
Sbjct: 59 DSEEKTSPVKN--VKKEPKEVD 78
>UNIPROTKB|Q7RPC6 [details] [associations]
symbol:PY01533 "DNA ligase" species:73239 "Plasmodium
yoelii yoelii" [GO:0003910 "DNA ligase (ATP) activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0005694
"chromosome" evidence=IBA] [GO:0005739 "mitochondrion"
evidence=IBA] [GO:0006266 "DNA ligation" evidence=IBA] [GO:0006273
"lagging strand elongation" evidence=IBA] [GO:0006289
"nucleotide-excision repair" evidence=IBA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005739
GO:GO:0005524 GO:GO:0005634 GO:GO:0005694 GO:GO:0003677
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0006289 GO:GO:0006273 eggNOG:COG1793 KO:K10747 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 EMBL:AABL01000407 RefSeq:XP_729309.1
ProteinModelPortal:Q7RPC6 STRING:Q7RPC6 GeneID:3801864
KEGG:pyo:PY01533 EuPathDB:PlasmoDB:PY01533 Uniprot:Q7RPC6
Length = 826
Score = 421 (153.3 bits), Expect = 3.2e-60, Sum P(2) = 3.2e-60
Identities = 94/222 (42%), Positives = 139/222 (62%)
Query: 955 GVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTS 1014
GVP++PMLAK T G+ +VL F N FTCEYKYDG+RAQIH + ++IFSRN + T
Sbjct: 445 GVPVQPMLAKPTKGIQEVLDRFNNVTFTCEYKYDGERAQIHYIDKDNIKIFSRNLETMTE 504
Query: 1015 RFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSV 1074
++PD+I I+ + P I+D+EVVA D +N KI+ FQ L++R+R KD + I+++
Sbjct: 505 KYPDVIQIVKDQIMPGVTESIIDSEVVAYDIENK-KILPFQILTTRKR--KD--VDIENI 559
Query: 1075 KVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTS 1134
KV IC+F FD++ NG ++ L RRK L L K G +YA + D
Sbjct: 560 KVKICLFPFDLICCNGVPVIKEPLEIRRKLLYSLLRC-KEGVLEYATHSEMNNID----- 613
Query: 1135 DVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
D+ + FL++A+ ++CEG++VK+L +A Y PS+RS +W
Sbjct: 614 DIDI-----FLQDAIENNCEGLMVKTLLDNASYEPSRRSLNW 650
Score = 282 (104.3 bits), Expect = 3.2e-60, Sum P(2) = 3.2e-60
Identities = 88/295 (29%), Positives = 146/295 (49%)
Query: 630 DNQEGDRGKTVNR--LEFSKSSVQSDSCNKDCSSALEKIVSEELQHITDMSVQRPSKELM 687
+ +E + K N + KS V++++ K S K+ +E I+D+S + +
Sbjct: 19 EEKEASKRKNTNDDGAKTKKSKVKNENEIKKGSLFNCKVYEDE--KISDLSSPKFNPANF 76
Query: 688 DPTLVSLPPEKYDPIEHACWSSGQPAPYIHLARTFDLVEAERG-----KIKAMSMLCNMF 742
D + + L EK D I+H S + L TF+ +E +G K +L N+F
Sbjct: 77 DISNLCLS-EK-DKIKHKFKDS---LLFTFLTNTFNQIEELKGSGAGSKKNVAIILSNVF 131
Query: 743 RSLLALSPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEACGTNRSKIRDMYNRL 802
R L+ SP+D++PAVY+ NK+A +++N+E +G +L+ + EA + I+ ++
Sbjct: 132 RVLIYYSPNDLIPAVYITLNKVAPDYQNVEAGVGEALILKTMSEAYSRTEASIKKDLQQI 191
Query: 803 GDLGDVAQECRQTQXXXXXXXXXXIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCRE 862
DLG +A+ C I+ V++ L I +GS S +K+ +I L+ S +
Sbjct: 192 EDLGIIAESCSCKMRTIFPLPRLTIQSVFNELKSIPNISGSNSQQKKREVIKKLLVSAKT 251
Query: 863 KEMKFLVRTLVRNLRIGAMMRTILPALAQAVVMNSSL---EFSHEGKMENLKEKL 914
E K++VR L + LRIG T+L ALA A V+ +GKM N EKL
Sbjct: 252 SEAKYIVRFLQQRLRIGVNSATVLQALAYAFVLTRPEIPENIIKDGKMMN--EKL 304
>WB|WBGene00002985 [details] [associations]
symbol:lig-1 species:6239 "Caenorhabditis elegans"
[GO:0003910 "DNA ligase (ATP) activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003909 "DNA ligase activity" evidence=IEA]
[GO:0051103 "DNA ligation involved in DNA repair" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0051301 "cell division" evidence=IMP] [GO:0000910
"cytokinesis" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0006898 GO:GO:0005694
GO:GO:0046872 GO:GO:0003677 GO:GO:0007049 GO:GO:0000910
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0006273 eggNOG:COG1793 HOGENOM:HOG000036006 KO:K10747
OMA:AQVACLY GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 EMBL:Z73970 PIR:T19544
RefSeq:NP_741625.2 RefSeq:NP_741626.2 ProteinModelPortal:Q27474
SMR:Q27474 STRING:Q27474 PaxDb:Q27474 PRIDE:Q27474
EnsemblMetazoa:C29A12.3a GeneID:179502 KEGG:cel:CELE_C29A12.3
UCSC:C29A12.3a CTD:179502 WormBase:C29A12.3a WormBase:C29A12.3b
GeneTree:ENSGT00700000104556 InParanoid:Q27474 NextBio:905678
Uniprot:Q27474
Length = 773
Score = 600 (216.3 bits), Expect = 3.5e-59, Sum P(2) = 3.5e-59
Identities = 141/426 (33%), Positives = 230/426 (53%)
Query: 707 WSSGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIAS 766
W+ G PY A T + +E GK K + L F +L SPDD+ VY+ N++
Sbjct: 13 WAKGSKVPYKEFALTLEKIEELSGK-KKVDELAQFFTKVLDFSPDDLTACVYMSVNQLGP 71
Query: 767 NHENIELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQXXXXXXXXXX 826
++E +EL + + + A+ +A G KI++ GDLG VAQ+ R Q
Sbjct: 72 SYEGLELGVAENSLIKAVAKATGRTEGKIKEDLRAKGDLGTVAQQSRSNQKMLAVPKALT 131
Query: 827 IKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTIL 886
+ V++ L +I+ +G+ + +K I L+ +C+ E +FLVR L +RIG +++L
Sbjct: 132 VPTVFNKLTEIAKLSGTSAMNKKVDAISALLIACQGIEARFLVRMLAGKMRIGLGEQSVL 191
Query: 887 PALAQAVVMNSSLEFSHEG-KMENLKE-KLQSLSAAAVEAYNXXXXXXXXXXXXMNKGIG 944
AL A ++ + G K+++LK+ ++ + A E N + +G+
Sbjct: 192 SALGHAFTLSKITDQKVRGDKLDSLKDANVKRVKTAYCECPNYNRLIEVA----LTEGVE 247
Query: 945 FSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRI 1004
+ PG+P+KPMLA T G+ ++++ F+N+ TCE+KYDG+R QIHK DG + I
Sbjct: 248 ALVEKCKLSPGIPLKPMLAHPTKGIDEIMRRFRNQTMTCEWKYDGERGQIHKREDGQIFI 307
Query: 1005 FSRNGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGG 1064
+SRN + T+++PD+I I+ +FI+DAEVVAID I+ FQ LS+R+R
Sbjct: 308 YSRNQENNTTKYPDIIEKISSCIGDGVTSFIVDAEVVAIDEAG--LILPFQVLSTRKR-- 363
Query: 1065 KDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKM-GYFQYAKEM 1123
K++ VKV VF+FD+++ NGE L+ LR+RR+ L+ F +K+ G F +A +
Sbjct: 364 KNATDD-NGVKV--VVFLFDLLYFNGEPLVRKPLRKRRELLRTNF--KKIDGSFYFATSV 418
Query: 1124 TVEGDD 1129
D
Sbjct: 419 DTNDTD 424
Score = 180 (68.4 bits), Expect = 8.7e-10, P = 8.7e-10
Identities = 49/127 (38%), Positives = 78/127 (61%)
Query: 1051 IMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFY 1110
I+ FQ LS+R+R K++ VKV VF+FD+++ NGE L+ LR+RR+ L+ F
Sbjct: 352 ILPFQVLSTRKR--KNATDD-NGVKV--VVFLFDLLYFNGEPLVRKPLRKRRELLRTNF- 405
Query: 1111 DEKM-GYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSP 1169
+K+ G F +A + T+D +IN+F +EA+ + CEG+++K+LD +A Y
Sbjct: 406 -KKIDGSFYFATSVD--------TNDTD--EINSFFDEAVQNKCEGLMIKTLDTEATYEI 454
Query: 1170 SKRSDSW 1176
S+RS SW
Sbjct: 455 SRRSHSW 461
Score = 43 (20.2 bits), Expect = 3.5e-59, Sum P(2) = 3.5e-59
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 1095 GYT---LRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDD 1129
G+T L ++ K L+D D+ Y+Q+ + T++ DD
Sbjct: 518 GFTDEDLAEQYKILQDKKIDKSPSYYQF--DHTLKPDD 553
>UNIPROTKB|Q27474 [details] [associations]
symbol:lig-1 "DNA ligase 1" species:6239 "Caenorhabditis
elegans" [GO:0006289 "nucleotide-excision repair" evidence=IBA]
[GO:0006273 "lagging strand elongation" evidence=IBA] [GO:0006266
"DNA ligation" evidence=IBA] [GO:0005739 "mitochondrion"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0005634
"nucleus" evidence=IBA] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IBA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0006898 GO:GO:0005694
GO:GO:0046872 GO:GO:0003677 GO:GO:0007049 GO:GO:0000910
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0006273 eggNOG:COG1793 HOGENOM:HOG000036006 KO:K10747
OMA:AQVACLY GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 EMBL:Z73970 PIR:T19544
RefSeq:NP_741625.2 RefSeq:NP_741626.2 ProteinModelPortal:Q27474
SMR:Q27474 STRING:Q27474 PaxDb:Q27474 PRIDE:Q27474
EnsemblMetazoa:C29A12.3a GeneID:179502 KEGG:cel:CELE_C29A12.3
UCSC:C29A12.3a CTD:179502 WormBase:C29A12.3a WormBase:C29A12.3b
GeneTree:ENSGT00700000104556 InParanoid:Q27474 NextBio:905678
Uniprot:Q27474
Length = 773
Score = 600 (216.3 bits), Expect = 3.5e-59, Sum P(2) = 3.5e-59
Identities = 141/426 (33%), Positives = 230/426 (53%)
Query: 707 WSSGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIAS 766
W+ G PY A T + +E GK K + L F +L SPDD+ VY+ N++
Sbjct: 13 WAKGSKVPYKEFALTLEKIEELSGK-KKVDELAQFFTKVLDFSPDDLTACVYMSVNQLGP 71
Query: 767 NHENIELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQXXXXXXXXXX 826
++E +EL + + + A+ +A G KI++ GDLG VAQ+ R Q
Sbjct: 72 SYEGLELGVAENSLIKAVAKATGRTEGKIKEDLRAKGDLGTVAQQSRSNQKMLAVPKALT 131
Query: 827 IKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTIL 886
+ V++ L +I+ +G+ + +K I L+ +C+ E +FLVR L +RIG +++L
Sbjct: 132 VPTVFNKLTEIAKLSGTSAMNKKVDAISALLIACQGIEARFLVRMLAGKMRIGLGEQSVL 191
Query: 887 PALAQAVVMNSSLEFSHEG-KMENLKE-KLQSLSAAAVEAYNXXXXXXXXXXXXMNKGIG 944
AL A ++ + G K+++LK+ ++ + A E N + +G+
Sbjct: 192 SALGHAFTLSKITDQKVRGDKLDSLKDANVKRVKTAYCECPNYNRLIEVA----LTEGVE 247
Query: 945 FSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRI 1004
+ PG+P+KPMLA T G+ ++++ F+N+ TCE+KYDG+R QIHK DG + I
Sbjct: 248 ALVEKCKLSPGIPLKPMLAHPTKGIDEIMRRFRNQTMTCEWKYDGERGQIHKREDGQIFI 307
Query: 1005 FSRNGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGG 1064
+SRN + T+++PD+I I+ +FI+DAEVVAID I+ FQ LS+R+R
Sbjct: 308 YSRNQENNTTKYPDIIEKISSCIGDGVTSFIVDAEVVAIDEAG--LILPFQVLSTRKR-- 363
Query: 1065 KDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKM-GYFQYAKEM 1123
K++ VKV VF+FD+++ NGE L+ LR+RR+ L+ F +K+ G F +A +
Sbjct: 364 KNATDD-NGVKV--VVFLFDLLYFNGEPLVRKPLRKRRELLRTNF--KKIDGSFYFATSV 418
Query: 1124 TVEGDD 1129
D
Sbjct: 419 DTNDTD 424
Score = 180 (68.4 bits), Expect = 8.7e-10, P = 8.7e-10
Identities = 49/127 (38%), Positives = 78/127 (61%)
Query: 1051 IMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFY 1110
I+ FQ LS+R+R K++ VKV VF+FD+++ NGE L+ LR+RR+ L+ F
Sbjct: 352 ILPFQVLSTRKR--KNATDD-NGVKV--VVFLFDLLYFNGEPLVRKPLRKRRELLRTNF- 405
Query: 1111 DEKM-GYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSP 1169
+K+ G F +A + T+D +IN+F +EA+ + CEG+++K+LD +A Y
Sbjct: 406 -KKIDGSFYFATSVD--------TNDTD--EINSFFDEAVQNKCEGLMIKTLDTEATYEI 454
Query: 1170 SKRSDSW 1176
S+RS SW
Sbjct: 455 SRRSHSW 461
Score = 43 (20.2 bits), Expect = 3.5e-59, Sum P(2) = 3.5e-59
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 1095 GYT---LRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDD 1129
G+T L ++ K L+D D+ Y+Q+ + T++ DD
Sbjct: 518 GFTDEDLAEQYKILQDKKIDKSPSYYQF--DHTLKPDD 553
>UNIPROTKB|Q5B061 [details] [associations]
symbol:AN6069.2 "DNA ligase" species:227321 "Aspergillus
nidulans FGSC A4" [GO:0003910 "DNA ligase (ATP) activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0005694
"chromosome" evidence=IBA] [GO:0005739 "mitochondrion"
evidence=IBA] [GO:0006266 "DNA ligation" evidence=IBA] [GO:0006273
"lagging strand elongation" evidence=IBA] [GO:0006289
"nucleotide-excision repair" evidence=IBA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005739
GO:GO:0005524 GO:GO:0005634 GO:GO:0005694 GO:GO:0003677
GO:GO:0006310 EMBL:AACD01000104 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006289 GO:GO:0006273
eggNOG:COG1793 KO:K10747 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574
OrthoDB:EOG4RV60K RefSeq:XP_663673.1 ProteinModelPortal:Q5B061
STRING:Q5B061 GeneID:2871154 KEGG:ani:AN6069.2 Uniprot:Q5B061
Length = 886
Score = 379 (138.5 bits), Expect = 2.8e-57, Sum P(2) = 2.8e-57
Identities = 134/496 (27%), Positives = 225/496 (45%)
Query: 520 SKRKKTVTNNPKKKGKVPSKMESSGAKQPTITSFFNKLLPNMSQGDVVESKSE-ECPKDE 578
++ K T + P ++ PS + + +T +++ GD E K E D+
Sbjct: 44 NRSKSTSASRPNRE---PSSLNGNTKNASAVTRG-----DDVNTGDAFEVKPEMRAGADQ 95
Query: 579 NPLQSNAIKTYGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYDNQEGDRGK 638
NPL+ + + + D+ K+ N+ + + KT +D ++ +G + +
Sbjct: 96 NPLKRDKSEDVSDS-DESEKVQPSNKRRRKSSG----KTPAKPQ--IDSSPESTKGRKSQ 148
Query: 639 TVNRLE--FSKSSVQSDSCNKDCSSALEKIVSEELQHITDMSVQRPSKELMDPTLVSLPP 696
K+S + + D S A E+ +S + TD + KE+ + ++
Sbjct: 149 VKEPTPEIVVKASGEETPEDPDVSEAEEEGLSAS-EDETDKKPELKKKEI-EKVQATIKG 206
Query: 697 EKYDPIEHACWSSGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMF-RSLLALSPDDVLP 755
DP + W G+P PY L TF L+E +++ ++ C++F R +L L+P D LP
Sbjct: 207 SGNDP--YPDWQPGEPVPYAALCTTFSLIEMTTKRLQILAH-CSLFLRQVLRLTPQDFLP 263
Query: 756 AVYLCTNKIASNHENIELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQT 815
V L NK+A+++ IEL IG SL+ AI E+ G + + I+ + +GDLG VA + R
Sbjct: 264 TVQLMINKLAADYAGIELGIGESLIMKAIGESTGRSLAVIKADQHEIGDLGLVAAKSRSN 323
Query: 816 QXXXXXXXXXXIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCRE----KEMKFLVRT 871
Q ++ V+ L I+ G G+ +K S I L+ + K K + T
Sbjct: 324 QPTMFKPKALTVRGVHEGLLNIAKVQGHGAQDKKISGIKKLLSAADAATTGKGSKGIDIT 383
Query: 872 LVRNLRIGA--MMR----TILPALAQAVVMNSSLE--FSHEGKMENLK----EKLQSLSA 919
+ A ++R + LA+ V+ + + SHE ++ K E+L A
Sbjct: 384 KNKGGPSEAKYIVRFLEGKLRLGLAEKTVLVALAQAVVSHEAALKGKKAPSAEELAEGEA 443
Query: 920 AAVEAYNXXXXXXXXXXXXMNKGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNK 979
Y+ + G+ + PG+PIKPMLAK T + +VL F+ K
Sbjct: 444 ILKTVYSELPAYEVIIPALLEHGLSNLREHCKLQPGIPIKPMLAKPTKSITEVLDRFEGK 503
Query: 980 AFTCEYKYDGQRAQIH 995
FTCEYKYDG+RAQIH
Sbjct: 504 DFTCEYKYDGERAQIH 519
Score = 300 (110.7 bits), Expect = 2.8e-57, Sum P(2) = 2.8e-57
Identities = 71/191 (37%), Positives = 114/191 (59%)
Query: 987 YDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRK 1046
Y G + + + G IFSRN ++ + ++PD+++ ++ + KP +F+LD E VA D +
Sbjct: 529 YPGAQLTLKESA-GLSAIFSRNSEDLSKKYPDVLAKLSTWIKPGVKSFVLDCETVAWDVE 587
Query: 1047 NGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLK 1106
K++ FQ+L +R+R KD + + VKV +CVF FD++F NGE + LRQRR L
Sbjct: 588 -AKKVLPFQQLMTRKR--KD--VKAEDVKVKVCVFAFDLLFLNGEPTVKKPLRQRRDLLH 642
Query: 1107 DLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVD-A 1165
F + G FQ+A+ G+ N L +I L++++ +SCEG++VK LD + +
Sbjct: 643 SSFQPIE-GEFQFAQY----GNTN------DLEQIQTLLDDSVKASCEGLMVKMLDTEES 691
Query: 1166 GYSPSKRSDSW 1176
GY PSKRS +W
Sbjct: 692 GYEPSKRSRNW 702
Score = 44 (20.5 bits), Expect = 9.1e-22, Sum P(2) = 9.1e-22
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 334 LREYVKFLKPKRVIPTVGMDIEKLDSKHA 362
LR+ ++ L P+ +PTV + I KL + +A
Sbjct: 250 LRQVLR-LTPQDFLPTVQLMINKLAADYA 277
>ASPGD|ASPL0000001880 [details] [associations]
symbol:AN6069 species:162425 "Emericella nidulans"
[GO:0033567 "DNA replication, Okazaki fragment processing"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0000723
"telomere maintenance" evidence=IEA] [GO:0007090 "regulation of S
phase of mitotic cell cycle" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0051103
"DNA ligation involved in DNA repair" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0003910 "DNA ligase (ATP) activity" evidence=IEA]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:BN001301
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
HOGENOM:HOG000036006 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574
EnsemblFungi:CADANIAT00006948 OMA:ETICNIG Uniprot:C8V2T3
Length = 932
Score = 379 (138.5 bits), Expect = 3.5e-57, Sum P(2) = 3.5e-57
Identities = 134/496 (27%), Positives = 225/496 (45%)
Query: 520 SKRKKTVTNNPKKKGKVPSKMESSGAKQPTITSFFNKLLPNMSQGDVVESKSE-ECPKDE 578
++ K T + P ++ PS + + +T +++ GD E K E D+
Sbjct: 90 NRSKSTSASRPNRE---PSSLNGNTKNASAVTRG-----DDVNTGDAFEVKPEMRAGADQ 141
Query: 579 NPLQSNAIKTYGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYDNQEGDRGK 638
NPL+ + + + D+ K+ N+ + + KT +D ++ +G + +
Sbjct: 142 NPLKRDKSEDVSDS-DESEKVQPSNKRRRKSSG----KTPAKPQ--IDSSPESTKGRKSQ 194
Query: 639 TVNRLE--FSKSSVQSDSCNKDCSSALEKIVSEELQHITDMSVQRPSKELMDPTLVSLPP 696
K+S + + D S A E+ +S + TD + KE+ + ++
Sbjct: 195 VKEPTPEIVVKASGEETPEDPDVSEAEEEGLSAS-EDETDKKPELKKKEI-EKVQATIKG 252
Query: 697 EKYDPIEHACWSSGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMF-RSLLALSPDDVLP 755
DP + W G+P PY L TF L+E +++ ++ C++F R +L L+P D LP
Sbjct: 253 SGNDP--YPDWQPGEPVPYAALCTTFSLIEMTTKRLQILAH-CSLFLRQVLRLTPQDFLP 309
Query: 756 AVYLCTNKIASNHENIELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQT 815
V L NK+A+++ IEL IG SL+ AI E+ G + + I+ + +GDLG VA + R
Sbjct: 310 TVQLMINKLAADYAGIELGIGESLIMKAIGESTGRSLAVIKADQHEIGDLGLVAAKSRSN 369
Query: 816 QXXXXXXXXXXIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCRE----KEMKFLVRT 871
Q ++ V+ L I+ G G+ +K S I L+ + K K + T
Sbjct: 370 QPTMFKPKALTVRGVHEGLLNIAKVQGHGAQDKKISGIKKLLSAADAATTGKGSKGIDIT 429
Query: 872 LVRNLRIGA--MMR----TILPALAQAVVMNSSLE--FSHEGKMENLK----EKLQSLSA 919
+ A ++R + LA+ V+ + + SHE ++ K E+L A
Sbjct: 430 KNKGGPSEAKYIVRFLEGKLRLGLAEKTVLVALAQAVVSHEAALKGKKAPSAEELAEGEA 489
Query: 920 AAVEAYNXXXXXXXXXXXXMNKGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNK 979
Y+ + G+ + PG+PIKPMLAK T + +VL F+ K
Sbjct: 490 ILKTVYSELPAYEVIIPALLEHGLSNLREHCKLQPGIPIKPMLAKPTKSITEVLDRFEGK 549
Query: 980 AFTCEYKYDGQRAQIH 995
FTCEYKYDG+RAQIH
Sbjct: 550 DFTCEYKYDGERAQIH 565
Score = 300 (110.7 bits), Expect = 3.5e-57, Sum P(2) = 3.5e-57
Identities = 71/191 (37%), Positives = 114/191 (59%)
Query: 987 YDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRK 1046
Y G + + + G IFSRN ++ + ++PD+++ ++ + KP +F+LD E VA D +
Sbjct: 575 YPGAQLTLKESA-GLSAIFSRNSEDLSKKYPDVLAKLSTWIKPGVKSFVLDCETVAWDVE 633
Query: 1047 NGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLK 1106
K++ FQ+L +R+R KD + + VKV +CVF FD++F NGE + LRQRR L
Sbjct: 634 -AKKVLPFQQLMTRKR--KD--VKAEDVKVKVCVFAFDLLFLNGEPTVKKPLRQRRDLLH 688
Query: 1107 DLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVD-A 1165
F + G FQ+A+ G+ N L +I L++++ +SCEG++VK LD + +
Sbjct: 689 SSFQPIE-GEFQFAQY----GNTN------DLEQIQTLLDDSVKASCEGLMVKMLDTEES 737
Query: 1166 GYSPSKRSDSW 1176
GY PSKRS +W
Sbjct: 738 GYEPSKRSRNW 748
Score = 44 (20.5 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 334 LREYVKFLKPKRVIPTVGMDIEKLDSKHA 362
LR+ ++ L P+ +PTV + I KL + +A
Sbjct: 296 LRQVLR-LTPQDFLPTVQLMINKLAADYA 323
>GENEDB_PFALCIPARUM|MAL13P1.22 [details] [associations]
symbol:MAL13P1.22 "DNA ligase 1" species:5833
"Plasmodium falciparum" [GO:0005657 "replication fork"
evidence=ISS] [GO:0006266 "DNA ligation" evidence=ISS] [GO:0006273
"lagging strand elongation" evidence=ISS] [GO:0020011 "apicoplast"
evidence=ISS] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524 GO:GO:0003677
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0006266 GO:GO:0005657 EMBL:AL844509 GenomeReviews:AL844509_GR
GO:GO:0006273 HOGENOM:HOG000036006 KO:K10747 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 GO:GO:0020011 OMA:ETICNIG RefSeq:XP_001349768.1
ProteinModelPortal:Q8IES4 EnsemblProtists:MAL13P1.22:mRNA
GeneID:813777 KEGG:pfa:MAL13P1.22 EuPathDB:PlasmoDB:PF3D7_1304100
ProtClustDB:CLSZ2432498 Uniprot:Q8IES4
Length = 912
Score = 410 (149.4 bits), Expect = 6.6e-56, Sum P(2) = 6.6e-56
Identities = 92/222 (41%), Positives = 136/222 (61%)
Query: 955 GVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTS 1014
G+P++PMLAK T GV +VL F N FTCEYKYDG+RAQIH + ++IFSRN + T
Sbjct: 531 GIPVQPMLAKPTKGVQEVLDRFNNVTFTCEYKYDGERAQIHYIDKDNIKIFSRNLETMTE 590
Query: 1015 RFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSV 1074
++PD+I II + I+D+EVVA D N KI+ FQ L++R+R KD + I+++
Sbjct: 591 KYPDVIQIIKDQIGENVKECIIDSEVVAYDIVNN-KILPFQVLTTRKR--KD--VDIENI 645
Query: 1075 KVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTS 1134
KV +C+F FD++ NG ++ L RRK L L K G YA +
Sbjct: 646 KVKVCLFPFDLICCNGIPVIKEPLAVRRKLLYSLL-KSKDGVLSYATHSEMN-------- 696
Query: 1135 DVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
++ I+ FL++A+ ++CEG++VK+L +A Y PS+RS +W
Sbjct: 697 --NIEDIDMFLQDAIENNCEGLMVKTLVENASYEPSRRSLNW 736
Score = 255 (94.8 bits), Expect = 6.6e-56, Sum P(2) = 6.6e-56
Identities = 78/292 (26%), Positives = 139/292 (47%)
Query: 615 EKTKGNVSMALDLYYDNQEGDRGKTVNRLEFSKSSVQSDSCNKDCSSALEK------IVS 668
+KTK N + + +E ++ K V R ++SS + K+ + ++K +V
Sbjct: 78 DKTKENETFEKGEVKEEEE-EKDKNVKRKIINESSKNKRAKVKNENDVIKKGSLFNCVVR 136
Query: 669 EELQHITDMSVQRPSKELMDPTLVSLPPEKYDPIEHACWSSGQPAPYIHLARTFDLVEAE 728
E+ + + D+S P + + L + D +H S + L F+ +E
Sbjct: 137 ED-EKVNDLS--SPKFNPVHFNINDLYLSEKDKEKHKFKDS---LLFTFLTNAFNQIEEL 190
Query: 729 RG-----KIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSA 783
+G K +L N+FR L+ SP+D++PAVY+ NK+A ++ N+E +G +L+
Sbjct: 191 KGSGTGSKKNVSIILSNIFRVLIYYSPNDLIPAVYITLNKVAPDYLNVEAGVGEALILKT 250
Query: 784 IEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQXXXXXXXXXXIKDVYSMLCKISVQTGS 843
+ EA S I+ ++ DLG +A+ C I+ V+ L I GS
Sbjct: 251 MSEAYSRTESSIKKDLQQIEDLGIIAENCSCKMRTIFPLPRLTIQSVFHELKSIPNLIGS 310
Query: 844 GSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQAVVM 895
S +K+ +I L+ S + E K++VR L + LRIG T++ AL+ A ++
Sbjct: 311 NSQQKKREVIKKLLVSAKTSEAKYIVRFLQQRLRIGVNSATVVQALSYAFIL 362
Score = 49 (22.3 bits), Expect = 2.9e-34, Sum P(2) = 2.9e-34
Identities = 44/204 (21%), Positives = 89/204 (43%)
Query: 501 EQEYKLPTIKHSIKSTLSPSKRKKTVTNNPK-KKGKVPSKMESSGAKQPTITS-FFNKLL 558
E+E K +K I + S +KR K N KKG + + + K ++S FN +
Sbjct: 94 EEEEKDKNVKRKIINESSKNKRAKVKNENDVIKKGSLFNCVVREDEKVNDLSSPKFNPVH 153
Query: 559 PNMSQGDVVESKSEECPKDENPLQSNAIKTYGEEIDQFLKIINGNESLKGYAATLLEKTK 618
N++ D+ S+ + K+++ + + + T+ N E LKG + T +K
Sbjct: 154 FNIN--DLYLSEKD---KEKHKFKDSLLFTF------LTNAFNQIEELKG-SGT---GSK 198
Query: 619 GNVSMALD------LYYDNQEGDRGKTVNRLEFSKSSVQSDSCNKDCS---SALEKIVSE 669
NVS+ L +YY + + + + + V D N + + + K +SE
Sbjct: 199 KNVSIILSNIFRVLIYYSPND-----LIPAVYITLNKVAPDYLNVEAGVGEALILKTMSE 253
Query: 670 ELQHITDMSVQRPSKELMDPTLVS 693
T+ S+++ +++ D +++
Sbjct: 254 AYSR-TESSIKKDLQQIEDLGIIA 276
Score = 43 (20.2 bits), Expect = 1.2e-33, Sum P(2) = 1.2e-33
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 632 QEGDRGKTVNRLEFSKSSVQSDSCNKDCSSALEKIVSE 669
++G KT F K V+ + KD + KI++E
Sbjct: 73 RKGTNDKTKENETFEKGEVKEEEEEKD-KNVKRKIINE 109
Score = 39 (18.8 bits), Expect = 3.3e-33, Sum P(2) = 3.3e-33
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 388 RGTSEIDENVEEGAGSGSNEGLSK 411
RG EI+EN+ G G+N ++K
Sbjct: 374 RG-KEINENLINGKLDGTNNLINK 396
>UNIPROTKB|Q8IES4 [details] [associations]
symbol:PfLigI "DNA ligase" species:36329 "Plasmodium
falciparum 3D7" [GO:0005657 "replication fork" evidence=ISS]
[GO:0006266 "DNA ligation" evidence=ISS] [GO:0006273 "lagging
strand elongation" evidence=ISS] [GO:0020011 "apicoplast"
evidence=ISS] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524 GO:GO:0003677
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0006266 GO:GO:0005657 EMBL:AL844509 GenomeReviews:AL844509_GR
GO:GO:0006273 HOGENOM:HOG000036006 KO:K10747 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 GO:GO:0020011 OMA:ETICNIG RefSeq:XP_001349768.1
ProteinModelPortal:Q8IES4 EnsemblProtists:MAL13P1.22:mRNA
GeneID:813777 KEGG:pfa:MAL13P1.22 EuPathDB:PlasmoDB:PF3D7_1304100
ProtClustDB:CLSZ2432498 Uniprot:Q8IES4
Length = 912
Score = 410 (149.4 bits), Expect = 6.6e-56, Sum P(2) = 6.6e-56
Identities = 92/222 (41%), Positives = 136/222 (61%)
Query: 955 GVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTS 1014
G+P++PMLAK T GV +VL F N FTCEYKYDG+RAQIH + ++IFSRN + T
Sbjct: 531 GIPVQPMLAKPTKGVQEVLDRFNNVTFTCEYKYDGERAQIHYIDKDNIKIFSRNLETMTE 590
Query: 1015 RFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSV 1074
++PD+I II + I+D+EVVA D N KI+ FQ L++R+R KD + I+++
Sbjct: 591 KYPDVIQIIKDQIGENVKECIIDSEVVAYDIVNN-KILPFQVLTTRKR--KD--VDIENI 645
Query: 1075 KVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTS 1134
KV +C+F FD++ NG ++ L RRK L L K G YA +
Sbjct: 646 KVKVCLFPFDLICCNGIPVIKEPLAVRRKLLYSLL-KSKDGVLSYATHSEMN-------- 696
Query: 1135 DVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
++ I+ FL++A+ ++CEG++VK+L +A Y PS+RS +W
Sbjct: 697 --NIEDIDMFLQDAIENNCEGLMVKTLVENASYEPSRRSLNW 736
Score = 255 (94.8 bits), Expect = 6.6e-56, Sum P(2) = 6.6e-56
Identities = 78/292 (26%), Positives = 139/292 (47%)
Query: 615 EKTKGNVSMALDLYYDNQEGDRGKTVNRLEFSKSSVQSDSCNKDCSSALEK------IVS 668
+KTK N + + +E ++ K V R ++SS + K+ + ++K +V
Sbjct: 78 DKTKENETFEKGEVKEEEE-EKDKNVKRKIINESSKNKRAKVKNENDVIKKGSLFNCVVR 136
Query: 669 EELQHITDMSVQRPSKELMDPTLVSLPPEKYDPIEHACWSSGQPAPYIHLARTFDLVEAE 728
E+ + + D+S P + + L + D +H S + L F+ +E
Sbjct: 137 ED-EKVNDLS--SPKFNPVHFNINDLYLSEKDKEKHKFKDS---LLFTFLTNAFNQIEEL 190
Query: 729 RG-----KIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSA 783
+G K +L N+FR L+ SP+D++PAVY+ NK+A ++ N+E +G +L+
Sbjct: 191 KGSGTGSKKNVSIILSNIFRVLIYYSPNDLIPAVYITLNKVAPDYLNVEAGVGEALILKT 250
Query: 784 IEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQXXXXXXXXXXIKDVYSMLCKISVQTGS 843
+ EA S I+ ++ DLG +A+ C I+ V+ L I GS
Sbjct: 251 MSEAYSRTESSIKKDLQQIEDLGIIAENCSCKMRTIFPLPRLTIQSVFHELKSIPNLIGS 310
Query: 844 GSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQAVVM 895
S +K+ +I L+ S + E K++VR L + LRIG T++ AL+ A ++
Sbjct: 311 NSQQKKREVIKKLLVSAKTSEAKYIVRFLQQRLRIGVNSATVVQALSYAFIL 362
Score = 49 (22.3 bits), Expect = 2.9e-34, Sum P(2) = 2.9e-34
Identities = 44/204 (21%), Positives = 89/204 (43%)
Query: 501 EQEYKLPTIKHSIKSTLSPSKRKKTVTNNPK-KKGKVPSKMESSGAKQPTITS-FFNKLL 558
E+E K +K I + S +KR K N KKG + + + K ++S FN +
Sbjct: 94 EEEEKDKNVKRKIINESSKNKRAKVKNENDVIKKGSLFNCVVREDEKVNDLSSPKFNPVH 153
Query: 559 PNMSQGDVVESKSEECPKDENPLQSNAIKTYGEEIDQFLKIINGNESLKGYAATLLEKTK 618
N++ D+ S+ + K+++ + + + T+ N E LKG + T +K
Sbjct: 154 FNIN--DLYLSEKD---KEKHKFKDSLLFTF------LTNAFNQIEELKG-SGT---GSK 198
Query: 619 GNVSMALD------LYYDNQEGDRGKTVNRLEFSKSSVQSDSCNKDCS---SALEKIVSE 669
NVS+ L +YY + + + + + V D N + + + K +SE
Sbjct: 199 KNVSIILSNIFRVLIYYSPND-----LIPAVYITLNKVAPDYLNVEAGVGEALILKTMSE 253
Query: 670 ELQHITDMSVQRPSKELMDPTLVS 693
T+ S+++ +++ D +++
Sbjct: 254 AYSR-TESSIKKDLQQIEDLGIIA 276
Score = 43 (20.2 bits), Expect = 1.2e-33, Sum P(2) = 1.2e-33
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 632 QEGDRGKTVNRLEFSKSSVQSDSCNKDCSSALEKIVSE 669
++G KT F K V+ + KD + KI++E
Sbjct: 73 RKGTNDKTKENETFEKGEVKEEEEEKD-KNVKRKIINE 109
Score = 39 (18.8 bits), Expect = 3.3e-33, Sum P(2) = 3.3e-33
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 388 RGTSEIDENVEEGAGSGSNEGLSK 411
RG EI+EN+ G G+N ++K
Sbjct: 374 RG-KEINENLINGKLDGTNNLINK 396
>TAIR|locus:2090832 [details] [associations]
symbol:SNM1 "SENSITIVE TO NITROGEN MUSTARD 1"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IMP] InterPro:IPR001279
SMART:SM00849 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0006281 GO:GO:0016787 eggNOG:COG1236 KO:K15340
InterPro:IPR011084 Pfam:PF07522 EMBL:X98130 EMBL:AB026648
UniGene:At.21140 UniGene:At.43974 EMBL:X97827 EMBL:AK117422
EMBL:BT005000 IPI:IPI00516333 RefSeq:NP_001030773.1
RefSeq:NP_189302.1 RefSeq:NP_850635.1 ProteinModelPortal:Q38961
SMR:Q38961 STRING:Q38961 EnsemblPlants:AT3G26680.1
EnsemblPlants:AT3G26680.2 EnsemblPlants:AT3G26680.3 GeneID:822280
KEGG:ath:AT3G26680 GeneFarm:5058 TAIR:At3g26680
HOGENOM:HOG000030842 InParanoid:Q38961 OMA:AALIHFR PhylomeDB:Q38961
ProtClustDB:CLSN2684871 Genevestigator:Q38961 GermOnline:AT3G26680
Uniprot:Q38961
Length = 484
Score = 560 (202.2 bits), Expect = 3.6e-53, P = 3.6e-53
Identities = 131/341 (38%), Positives = 189/341 (55%)
Query: 27 DSLIFPPIPRTFPPSKHVPNTRFLIDAFRYAADFSVS-YFLSHFHSDHYTGLSPSWSKGI 85
DS PR P K +P T F +DAFRY S YFL+HFH+DHY GL+ +WS G
Sbjct: 134 DSSFSNDSPRPCPFYKKLPGTPFTVDAFRYGCVQGCSAYFLTHFHADHYIGLTKAWSHGP 193
Query: 86 IFCSEITSRLLSQILNINPKFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRN 145
I+CS +TSRLL L++NP I+PL + + I+G +V L+ ANHCPGA F++ +
Sbjct: 194 IYCSSLTSRLLRLSLSVNPSSIHPLELDVEYTINGIKVTLIEANHCPGAALIHFRL--LD 251
Query: 146 GGFERYVHTGDFRFCKTMLLQPVM-NEFAGCDAVFLDTTYCNPKFLFPLQXXXXXXXXXX 204
G Y+HTGDFR K M P++ N+ ++LDTTYCNP++ FP +
Sbjct: 252 GTC--YLHTGDFRASKQMQTHPLLFNQRV--HVLYLDTTYCNPRYKFPSKEDVLSYVVRI 307
Query: 205 XXXXXXXXXXXLQKRVLFLVATYVIGKEKILIEIFKKCGRKVCVDSRKMEVLRVLGYGD- 263
Q + L +V +Y IGKE + + I K G K+ ++ + +L+ G+ D
Sbjct: 308 TKDFLRK-----QPKTLIVVGSYSIGKECVYLAIAKALGVKIFANASRRRILQSFGWDDI 362
Query: 264 SGVFTEDESETDVHVVGWNEIMVER----------GYDKVVGFVPTGWTYEVKRNKFA-- 311
S + D T +HV+ + + VER Y V+ F PTGWTY K +
Sbjct: 363 SKNLSTDGKATCLHVLPMSSLKVERLDEHLKIYREQYGAVLAFRPTGWTYSEKIGEHLDL 422
Query: 312 VR--SKDAFEIHLVPYSEHSNYDELREYVKFLKPKRVIPTV 350
++ S+ I+ VPYSEHS++ ELRE+V+FL+P ++IPTV
Sbjct: 423 IKPTSRGKITIYGVPYSEHSSFTELREFVQFLRPDKIIPTV 463
>RGD|1306156 [details] [associations]
symbol:Dclre1a "DNA cross-link repair 1A" species:10116 "Rattus
norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005730
"nucleolus" evidence=IEA;ISO] [GO:0006289 "nucleotide-excision
repair" evidence=IEA;ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001279 SMART:SM00849 RGD:1306156
GO:GO:0005730 GO:GO:0016787 GO:GO:0006289 CTD:9937 KO:K15340
OrthoDB:EOG4F4SB1 InterPro:IPR011084 Pfam:PF07522 OMA:ECPDGLL
GeneTree:ENSGT00530000063183 EMBL:CH473986 IPI:IPI00363761
RefSeq:NP_001099671.1 UniGene:Rn.41244 Ensembl:ENSRNOT00000036321
GeneID:292127 KEGG:rno:292127 UCSC:RGD:1306156 NextBio:633805
Uniprot:D3Z924
Length = 1026
Score = 534 (193.0 bits), Expect = 6.9e-48, P = 6.9e-48
Identities = 127/349 (36%), Positives = 192/349 (55%)
Query: 36 RTFPPSKHVPNTRFLIDAFRYAA-DFSVSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSR 94
RT P K +P T F +DAF+Y + +YFL+HFHSDHY GLS +++ I +CSEIT
Sbjct: 685 RTCPFYKRIPGTGFTVDAFQYGEIEGCTAYFLTHFHSDHYAGLSKDFTRPI-YCSEITGS 743
Query: 95 LLSQILNINPKFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHT 154
LL + L + ++I+ LP+ ++DG +VVL+ ANHCPGA LF++P NG +HT
Sbjct: 744 LLKKKLRVQEQYIHQLPMDTECIVDGVKVVLLDANHCPGATMILFQLP--NGAVT--LHT 799
Query: 155 GDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQXXXXXXXXXXXXXXXXXXXX 214
GDFR +M + + +FLDTTYC+P++ FP Q
Sbjct: 800 GDFRADPSMERSLLASRKV--HTLFLDTTYCSPEYTFPSQQEAIQFAINTAFEAVT---- 853
Query: 215 XLQKRVLFLVATYVIGKEKILIEIFKKCGRKVCVDSRKMEVLRVLGYGD-SGVFTEDESE 273
L R L + TY IGKEK+ + I G KV + K + L+ L + S + T D
Sbjct: 854 -LNPRALIVCGTYCIGKEKVFLAIADVLGSKVGMSQEKYKTLQCLNIPEVSSLITTDMCN 912
Query: 274 TDVHVVGWNEI--------MVERG--YDKVVGFVPTGWTYEVKRNKFA---VRSKDAFEI 320
+ VH++ +I + + G +D+++ F PTGWT+ A ++K I
Sbjct: 913 SLVHLLPMMQINFKGLQNHLKKCGGKFDQILAFRPTGWTHSNNITSIADITPQTKGNIAI 972
Query: 321 HLVPYSEHSNYDELREYVKFLKPKRVIPTVGMDIEKLDSKHANKMRKYF 369
+ +PYSEHS+Y E++ +V++LKP+++IPTV ++ S+ N M KYF
Sbjct: 973 YGIPYSEHSSYLEMKRFVQWLKPQKIIPTV--NVGTFQSR--NTMEKYF 1017
>UNIPROTKB|I3LAK7 [details] [associations]
symbol:DCLRE1A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016787 "hydrolase activity" evidence=IEA]
EMBL:CU424456 Ensembl:ENSSSCT00000023797
GeneTree:ENSGT00530000063183 GO:GO:0016787 InterPro:IPR001279
InterPro:IPR011084 Pfam:PF07522 SMART:SM00849 Uniprot:I3LAK7
Length = 956
Score = 527 (190.6 bits), Expect = 3.1e-47, P = 3.1e-47
Identities = 128/349 (36%), Positives = 189/349 (54%)
Query: 36 RTFPPSKHVPNTRFLIDAFRYAA-DFSVSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSR 94
RT P K +P T F +DAF+Y + +YFL+HFHSDHY GLS +++ + +CSE+T
Sbjct: 615 RTCPFYKKIPGTGFTVDAFQYGVVEGCTAYFLTHFHSDHYAGLSKNFTFPV-YCSEVTGN 673
Query: 95 LLSQILNINPKFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHT 154
LL L++ ++I+PLPI +++G +VVL+ ANHCPGAV LF +P NG +HT
Sbjct: 674 LLKSKLHVQEQYIHPLPIDTECVVNGVKVVLLDANHCPGAVMVLFHLP--NGHV--ILHT 729
Query: 155 GDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQXXXXXXXXXXXXXXXXXXXX 214
GDFR TM + + ++LDTTYC+P++ FP Q
Sbjct: 730 GDFRADPTMERSLLAGQKV--HTLYLDTTYCSPEYSFPSQQEVIQFAINTAFEAVT---- 783
Query: 215 XLQKRVLFLVATYVIGKEKILIEIFKKCGRKVCVDSRKMEVLRVLGYGDSGVF-TEDESE 273
L L + TY IGKEK+ + I G KV + K LR L + F T D
Sbjct: 784 -LNPHTLVVCGTYSIGKEKVFLAIADVLGSKVGMSKEKYNTLRCLNIPEINSFITTDMCN 842
Query: 274 TDVHVVGWNEI--------MVERG--YDKVVGFVPTGWTYEVKRNKFA---VRSKDAFEI 320
+ VH++ +I + + G Y++++ F PTGWT+ K A ++K I
Sbjct: 843 SLVHLLPMMQINFKGLQNHLKKFGGKYNQILAFRPTGWTHSNKLTSIADVLPQTKGNISI 902
Query: 321 HLVPYSEHSNYDELREYVKFLKPKRVIPTVGMDIEKLDSKHANKMRKYF 369
+ +PYSEHS+Y E++ +V++LKP+ +IPTV + K S+ M KYF
Sbjct: 903 YGIPYSEHSSYPEMKRFVQWLKPRIIIPTVNVGTVK--SRRT--MEKYF 947
>MGI|MGI:1930042 [details] [associations]
symbol:Dclre1a "DNA cross-link repair 1A, PSO2 homolog (S.
cerevisiae)" species:10090 "Mus musculus" [GO:0005634 "nucleus"
evidence=ISA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IMP] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] InterPro:IPR001279 SMART:SM00849 MGI:MGI:1930042
EMBL:AF241240 GO:GO:0005634 GO:GO:0051301 GO:GO:0007067
GO:GO:0016787 GO:GO:0006289 eggNOG:COG1236 HOGENOM:HOG000168450
HOVERGEN:HBG081418 OrthoDB:EOG4F4SB1 InterPro:IPR011084
Pfam:PF07522 EMBL:BC072667 EMBL:AK220214 IPI:IPI00120389
UniGene:Mm.2805 ProteinModelPortal:Q9JIC3 SMR:Q9JIC3 STRING:Q9JIC3
PhosphoSite:Q9JIC3 PRIDE:Q9JIC3 UCSC:uc008hza.1 InParanoid:Q9JIC3
NextBio:311638 Genevestigator:Q9JIC3 GermOnline:ENSMUSG00000025077
Uniprot:Q9JIC3
Length = 1026
Score = 525 (189.9 bits), Expect = 6.6e-47, P = 6.6e-47
Identities = 127/353 (35%), Positives = 193/353 (54%)
Query: 34 IPRTFPPSKHVPNTRFLIDAFRYAA-DFSVSYFLSHFHSDHYTGLSPSWSKGIIFCSEIT 92
+ RT P K +P T F +DAF+Y + +YFL+HFHSDHY GLS +++ + +CSEIT
Sbjct: 683 VRRTCPFYKRIPGTGFTVDAFQYGEIEGCTAYFLTHFHSDHYAGLSKDFTRPV-YCSEIT 741
Query: 93 SRLLSQILNINPKFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYV 152
LL + L + ++I LP+ ++D +VVL+ ANHCPGA LF++P NG +
Sbjct: 742 GNLLKKKLRVQEQYIRQLPMDTECVVDSVKVVLLDANHCPGATMILFQLP--NGAV--IL 797
Query: 153 HTGDFRFCKTMLLQPVMNEFAG--CDAVFLDTTYCNPKFLFPLQXXXXXXXXXXXXXXXX 210
HTGDFR +M + AG +FLDTTYC+P++ FP Q
Sbjct: 798 HTGDFRADPSM----ERSRLAGRKVHTLFLDTTYCSPEYTFPSQQEVIQFAINTAFEAVT 853
Query: 211 XXXXXLQKRVLFLVATYVIGKEKILIEIFKKCGRKVCVDSRKMEVLRVLGYGD-SGVFTE 269
L R L + TY IGKEK+ + I G KV + K + L+ L + S + T
Sbjct: 854 -----LNPRALVVCGTYCIGKEKVFLAIADVLGSKVGMSQEKYKTLQCLNIPEVSSLITT 908
Query: 270 DESETDVHVVGWNEI--------MVERG--YDKVVGFVPTGWTYEVKRNKFA---VRSKD 316
D ++ VH++ +I + + G YD+++ F PTGWT+ A +++
Sbjct: 909 DMCDSLVHLLPMMQINFKGLQSHLKKCGGKYDQILAFRPTGWTHSNNITSTADIIPQTRG 968
Query: 317 AFEIHLVPYSEHSNYDELREYVKFLKPKRVIPTVGMDIEKLDSKHANKMRKYF 369
I+ +PYSEHS+Y E++ +V++LKP+++IPTV ++ S+ N M KYF
Sbjct: 969 NISIYGIPYSEHSSYLEMKRFVQWLKPQKIIPTV--NVGSFRSR--NTMEKYF 1017
>UNIPROTKB|I3LLR2 [details] [associations]
symbol:DCLRE1A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 SMART:SM00849 GO:GO:0016787 InterPro:IPR011084
Pfam:PF07522 GeneTree:ENSGT00530000063183 EMBL:CU424456
Ensembl:ENSSSCT00000024095 Uniprot:I3LLR2
Length = 1034
Score = 533 (192.7 bits), Expect = 7.4e-47, Sum P(2) = 7.4e-47
Identities = 137/381 (35%), Positives = 203/381 (53%)
Query: 6 SDKNLTLDSTHLFLST-QSSPPDSLIFPPI-PRTFPPSKHVPNTRFLIDAFRYAA-DFSV 62
+D+ LT STH L + P+S + RT P K +P T F +DAF+Y +
Sbjct: 662 NDRVLT-KSTHSRLQRGNTKTPESSNAGKLRKRTCPFYKKIPGTGFTVDAFQYGVVEGCT 720
Query: 63 SYFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLLSQILNINPKFIYPLPIKIPVLIDGCE 122
+YFL+HFHSDHY GLS +++ + +CSE+T LL L++ ++I+PLPI +++G +
Sbjct: 721 AYFLTHFHSDHYAGLSKNFTFPV-YCSEVTGNLLKSKLHVQEQYIHPLPIDTECVVNGVK 779
Query: 123 VVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFCKTMLLQPVMNEFAGCDAVFLDT 182
VVL+ ANHCPGAV LF +P NG +HTGDFR TM + + ++LDT
Sbjct: 780 VVLLDANHCPGAVMVLFHLP--NGHV--ILHTGDFRADPTMERSLLAGQKV--HTLYLDT 833
Query: 183 TYCNPKFLFPLQXXXXXXXXXXXXXXXXXXXXXLQKRVLFLVATYVIGKEKILIEIFKKC 242
TYC+P++ FP Q L L + TY IGKEK+ + I
Sbjct: 834 TYCSPEYSFPSQQEVIQFAINTAFEAVT-----LNPHTLVVCGTYSIGKEKVFLAIADVL 888
Query: 243 GRKVCVDSRKMEVLRVLGYGDSGVF-TEDESETDVHVVGWNEI--------MVERG--YD 291
G KV + K LR L + F T D + VH++ +I + + G Y+
Sbjct: 889 GSKVGMSKEKYNTLRCLNIPEINSFITTDMCNSLVHLLPMMQINFKGLQNHLKKFGGKYN 948
Query: 292 KVVGFVPTGWTYEVKRNKFA---VRSKDAFEIHLVPYSEHSNYDELREYVKFLKPKRVIP 348
+++ F PTGWT+ K A ++K I+ +PYSEHS+Y E++ +V++LKP+ +IP
Sbjct: 949 QILAFRPTGWTHSNKLTSIADVLPQTKGNISIYGIPYSEHSSYPEMKRFVQWLKPRIIIP 1008
Query: 349 TVGMDIEKLDSKHANKMRKYF 369
TV + K S+ M KYF
Sbjct: 1009 TVNVGTVK--SRRT--MEKYF 1025
Score = 42 (19.8 bits), Expect = 7.4e-47, Sum P(2) = 7.4e-47
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 7 DKNLTLDSTHLFLSTQSSPPDSLIFPPIPR 36
D +T +T +F T ++ I PP PR
Sbjct: 508 DCKVTALNTEIFSGTPAAAKSLKILPPGPR 537
>UNIPROTKB|F1S5H8 [details] [associations]
symbol:DCLRE1A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 SMART:SM00849 GO:GO:0016787 InterPro:IPR011084
Pfam:PF07522 OMA:ECPDGLL GeneTree:ENSGT00530000063183 EMBL:CU424456
Ensembl:ENSSSCT00000011643 Uniprot:F1S5H8
Length = 1045
Score = 533 (192.7 bits), Expect = 7.9e-47, Sum P(2) = 7.9e-47
Identities = 137/381 (35%), Positives = 203/381 (53%)
Query: 6 SDKNLTLDSTHLFLST-QSSPPDSLIFPPI-PRTFPPSKHVPNTRFLIDAFRYAA-DFSV 62
+D+ LT STH L + P+S + RT P K +P T F +DAF+Y +
Sbjct: 673 NDRVLT-KSTHSRLQRGNTKTPESSNAGKLRKRTCPFYKKIPGTGFTVDAFQYGVVEGCT 731
Query: 63 SYFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLLSQILNINPKFIYPLPIKIPVLIDGCE 122
+YFL+HFHSDHY GLS +++ + +CSE+T LL L++ ++I+PLPI +++G +
Sbjct: 732 AYFLTHFHSDHYAGLSKNFTFPV-YCSEVTGNLLKSKLHVQEQYIHPLPIDTECVVNGVK 790
Query: 123 VVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFCKTMLLQPVMNEFAGCDAVFLDT 182
VVL+ ANHCPGAV LF +P NG +HTGDFR TM + + ++LDT
Sbjct: 791 VVLLDANHCPGAVMVLFHLP--NGHV--ILHTGDFRADPTMERSLLAGQKV--HTLYLDT 844
Query: 183 TYCNPKFLFPLQXXXXXXXXXXXXXXXXXXXXXLQKRVLFLVATYVIGKEKILIEIFKKC 242
TYC+P++ FP Q L L + TY IGKEK+ + I
Sbjct: 845 TYCSPEYSFPSQQEVIQFAINTAFEAVT-----LNPHTLVVCGTYSIGKEKVFLAIADVL 899
Query: 243 GRKVCVDSRKMEVLRVLGYGDSGVF-TEDESETDVHVVGWNEI--------MVERG--YD 291
G KV + K LR L + F T D + VH++ +I + + G Y+
Sbjct: 900 GSKVGMSKEKYNTLRCLNIPEINSFITTDMCNSLVHLLPMMQINFKGLQNHLKKFGGKYN 959
Query: 292 KVVGFVPTGWTYEVKRNKFA---VRSKDAFEIHLVPYSEHSNYDELREYVKFLKPKRVIP 348
+++ F PTGWT+ K A ++K I+ +PYSEHS+Y E++ +V++LKP+ +IP
Sbjct: 960 QILAFRPTGWTHSNKLTSIADVLPQTKGNISIYGIPYSEHSSYPEMKRFVQWLKPRIIIP 1019
Query: 349 TVGMDIEKLDSKHANKMRKYF 369
TV + K S+ M KYF
Sbjct: 1020 TVNVGTVK--SRRT--MEKYF 1036
Score = 42 (19.8 bits), Expect = 7.9e-47, Sum P(2) = 7.9e-47
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 7 DKNLTLDSTHLFLSTQSSPPDSLIFPPIPR 36
D +T +T +F T ++ I PP PR
Sbjct: 519 DCKVTALNTEIFSGTPAAAKSLKILPPGPR 548
>UNIPROTKB|E1BN11 [details] [associations]
symbol:DCLRE1A "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006289 "nucleotide-excision repair" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001279 SMART:SM00849
GO:GO:0005730 GO:GO:0016787 GO:GO:0006289 CTD:9937 KO:K15340
InterPro:IPR011084 Pfam:PF07522 OMA:ECPDGLL
GeneTree:ENSGT00530000063183 EMBL:DAAA02059252 EMBL:DAAA02059253
IPI:IPI00712829 RefSeq:XP_002698556.1 RefSeq:XP_580486.2
UniGene:Bt.37962 Ensembl:ENSBTAT00000026896 GeneID:504377
KEGG:bta:504377 NextBio:20866632 Uniprot:E1BN11
Length = 1051
Score = 522 (188.8 bits), Expect = 1.5e-46, P = 1.5e-46
Identities = 129/352 (36%), Positives = 190/352 (53%)
Query: 36 RTFPPSKHVPNTRFLIDAFRYA-ADFSVSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSR 94
RT P K +P T F +DAF+Y + +YFL+HFHSDHY GLS +++ I +CS+IT
Sbjct: 710 RTCPFYKKIPGTGFTVDAFQYGWVEGCTAYFLTHFHSDHYAGLSKNFTFPI-YCSKITGN 768
Query: 95 LLSQILNINPKFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHT 154
LL L++ ++I+PLP +++G +V+L+ ANHCPGAV LF +P NG +HT
Sbjct: 769 LLKSKLHVQEQYIHPLPTDTECIVNGIKVILLDANHCPGAVMILFCLP--NGHV--ILHT 824
Query: 155 GDFRFCKTMLLQPVMNEFAGCDAV---FLDTTYCNPKFLFPLQXXXXXXXXXXXXXXXXX 211
GDFR +M GC V +LDTTYC+P++ FP Q
Sbjct: 825 GDFRADPSM-----ERSLLGCHKVHTLYLDTTYCSPEYSFPSQQEVIQFAINTAFETVT- 878
Query: 212 XXXXLQKRVLFLVATYVIGKEKILIEIFKKCGRKVCVDSRKMEVLRVLGYGD-SGVFTED 270
L R L + TY IGKEKI + I G KV + K L+ + S T D
Sbjct: 879 ----LNPRALVVCGTYSIGKEKIFLAIADVLGSKVGMSKEKYNTLQCFNIPEVSSFITTD 934
Query: 271 ESETDVHVVGWNEI--------MVERG--YDKVVGFVPTGWTYEVKRNKFA---VRSKDA 317
+ VH++ +I + + G Y++++ F PTGWT+ K A ++K
Sbjct: 935 MCNSLVHLLPMMQINFKGLQNHLKKCGGKYNQILAFRPTGWTHSNKLTSLADIIPQTKGN 994
Query: 318 FEIHLVPYSEHSNYDELREYVKFLKPKRVIPTVGMDIEKLDSKHANKMRKYF 369
I+ +PYSEHS+Y E++ +V++LKP+++IPTV ++ L S+ M KYF
Sbjct: 995 ISIYGIPYSEHSSYLEMKRFVQWLKPQKIIPTV--NVGSLKSRRT--MEKYF 1042
>UNIPROTKB|E2QZ29 [details] [associations]
symbol:DCLRE1A "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001279 SMART:SM00849
GO:GO:0005730 GO:GO:0016787 GO:GO:0006289 CTD:9937 KO:K15340
InterPro:IPR011084 Pfam:PF07522 OMA:ECPDGLL
GeneTree:ENSGT00530000063183 InterPro:IPR008996 SUPFAM:SSF50353
EMBL:AAEX03015537 RefSeq:XP_535018.3 Ensembl:ENSCAFT00000017779
GeneID:477824 KEGG:cfa:477824 NextBio:20853244 Uniprot:E2QZ29
Length = 1049
Score = 521 (188.5 bits), Expect = 1.9e-46, P = 1.9e-46
Identities = 125/349 (35%), Positives = 191/349 (54%)
Query: 36 RTFPPSKHVPNTRFLIDAFRYA-ADFSVSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSR 94
+T P K +P T F +DAF+Y + +YFL+HFHSDHY GLS +++ + +CSEIT
Sbjct: 708 KTCPFYKKIPGTGFTVDAFQYGLVEGCTAYFLTHFHSDHYAGLSKNFTFPV-YCSEITGN 766
Query: 95 LLSQILNINPKFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHT 154
LL L++ ++I+PLP+ +++G +VVL+ ANHCPGAV LF +P NG +HT
Sbjct: 767 LLKSKLHVQKQYIHPLPMDTECIVNGVKVVLLDANHCPGAVMILFYLP--NGNV--LLHT 822
Query: 155 GDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQXXXXXXXXXXXXXXXXXXXX 214
GDFR TM + + ++LDTTYC+P++ FP Q
Sbjct: 823 GDFRADPTMERSRLAGQKV--HTLYLDTTYCSPEYSFPSQQEVIQFAINTAFEAVTR--- 877
Query: 215 XLQKRVLFLVATYVIGKEKILIEIFKKCGRKVCVDSRKMEVLRVLGYGDSGVF-TEDESE 273
RVL + TY IGKEK+ + I G +V + K + L+ L D F T D
Sbjct: 878 --NPRVLVVCGTYSIGKEKVFLAIADVLGSRVAMSQEKYKTLQCLNIPDLNSFITTDMCN 935
Query: 274 TDVHVVGWNEI--------MVERG--YDKVVGFVPTGWTYEVKRNKF---AVRSKDAFEI 320
+ VH++ +I + + G +++++ F PTGWT+ + + K I
Sbjct: 936 SLVHLLPMMQINFKALQSHLKKCGGEFNQILAFRPTGWTHSNQLTNIRDIVPQIKGNISI 995
Query: 321 HLVPYSEHSNYDELREYVKFLKPKRVIPTVGMDIEKLDSKHANKMRKYF 369
+ +PYSEHS+Y EL+ +V++LKP+++IPTV ++ L S+ M KYF
Sbjct: 996 YGIPYSEHSSYLELKRFVQWLKPQKIIPTV--NVGTLKSRRT--MEKYF 1040
>UNIPROTKB|Q6PJP8 [details] [associations]
symbol:DCLRE1A "DNA cross-link repair 1A protein"
species:9606 "Homo sapiens" [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0051301 "cell
division" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR001279 SMART:SM00849
EMBL:D42045 GO:GO:0005730 GO:GO:0051301 GO:GO:0007067 EMBL:CH471066
GO:GO:0016787 GO:GO:0006289 EMBL:AL592546 eggNOG:COG1236 CTD:9937
HOGENOM:HOG000168450 HOVERGEN:HBG081418 KO:K15340 OrthoDB:EOG4F4SB1
InterPro:IPR011084 Pfam:PF07522 EMBL:AY607842 EMBL:BC013124
EMBL:BC062582 IPI:IPI00478916 RefSeq:NP_001258745.1
RefSeq:NP_055696.3 UniGene:Hs.1560 PDB:4B87 PDBsum:4B87
ProteinModelPortal:Q6PJP8 SMR:Q6PJP8 STRING:Q6PJP8
PhosphoSite:Q6PJP8 DMDM:311033461 PaxDb:Q6PJP8 PRIDE:Q6PJP8
Ensembl:ENST00000361384 Ensembl:ENST00000369305 GeneID:9937
KEGG:hsa:9937 UCSC:uc001law.2 GeneCards:GC10M115584 HGNC:HGNC:17660
HPA:HPA036907 MIM:609682 neXtProt:NX_Q6PJP8 PharmGKB:PA27174
InParanoid:Q6PJP8 OMA:ECPDGLL GenomeRNAi:9937 NextBio:37488
Bgee:Q6PJP8 CleanEx:HS_DCLRE1A Genevestigator:Q6PJP8
GermOnline:ENSG00000198924 Uniprot:Q6PJP8
Length = 1040
Score = 517 (187.1 bits), Expect = 5.2e-46, P = 5.2e-46
Identities = 124/349 (35%), Positives = 192/349 (55%)
Query: 36 RTFPPSKHVPNTRFLIDAFRYAA-DFSVSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSR 94
+T P K +P T F +DAF+Y + +YFL+HFHSDHY GLS ++ + +CSEIT
Sbjct: 699 KTCPFYKKIPGTGFTVDAFQYGVVEGCTAYFLTHFHSDHYAGLSKHFTFPV-YCSEITGN 757
Query: 95 LLSQILNINPKFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHT 154
LL L++ ++I+PLP+ +++G +VVL+ ANHCPGAV LF +P NG +HT
Sbjct: 758 LLKNKLHVQEQYIHPLPLDTECIVNGVKVVLLDANHCPGAVMILFYLP--NGTV--ILHT 813
Query: 155 GDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQXXXXXXXXXXXXXXXXXXXX 214
GDFR +M + ++ ++LDTTYC+P++ FP Q
Sbjct: 814 GDFRADPSMERSLLADQKV--HMLYLDTTYCSPEYTFPSQQEVIRFAINTAFEAVT---- 867
Query: 215 XLQKRVLFLVATYVIGKEKILIEIFKKCGRKVCVDSRKMEVLRVLGYGD-SGVFTEDESE 273
L L + TY IGKEK+ + I G KV + K + L+ L + + + T D
Sbjct: 868 -LNPHALVVCGTYSIGKEKVFLAIADVLGSKVGMSQEKYKTLQCLNIPEINSLITTDMCS 926
Query: 274 TDVHVVGWNEI--------MVERG--YDKVVGFVPTGWTYEVKRNKFA---VRSKDAFEI 320
+ VH++ +I + + G Y++++ F PTGWT+ K + A ++K I
Sbjct: 927 SLVHLLPMMQINFKGLQSHLKKCGGKYNQILAFRPTGWTHSNKFTRIADVIPQTKGNISI 986
Query: 321 HLVPYSEHSNYDELREYVKFLKPKRVIPTVGMDIEKLDSKHANKMRKYF 369
+ +PYSEHS+Y E++ +V++LKP+++IPTV + K S M KYF
Sbjct: 987 YGIPYSEHSSYLEMKRFVQWLKPQKIIPTVNVGTWKSRST----MEKYF 1031
>UNIPROTKB|G4N7T1 [details] [associations]
symbol:MGG_06370 "DNA ligase" species:242507 "Magnaporthe
oryzae 70-15" [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:CM001234
KO:K10747 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 RefSeq:XP_003717204.1
EnsemblFungi:MGG_06370T0 GeneID:2684525 KEGG:mgr:MGG_06370
Uniprot:G4N7T1
Length = 896
Score = 504 (182.5 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
Identities = 123/333 (36%), Positives = 188/333 (56%)
Query: 864 EMKFLVRTLVRNLRIGAMMRTILPALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVE 923
E KF+VR L LR+G RT+LP+LAQAV+ + S S +G + + + ++
Sbjct: 404 EAKFIVRFLEGKLRLGLAERTVLPSLAQAVIAHES---SKKGTIPSTSD-VEKAEQMLKT 459
Query: 924 AYNXXXXXXXXXXXXMNKGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTC 983
Y+ + GI + PG+P+KPMLAK T + +VL F+N+ FTC
Sbjct: 460 VYSELPSYEVIIPALLEHGIMNLKDNCKLRPGIPLKPMLAKPTKAITEVLDRFENQTFTC 519
Query: 984 EYKYDGQRAQIH------------------KLV-DGTVRIFSRNGDETTSRFPDLISIIN 1024
EYKYDG+RAQIH K V G IFSRN ++ + ++PD+++ ++
Sbjct: 520 EYKYDGERAQIHYVAKEANEELSTALPGATKAVGSGLAAIFSRNSEDLSQKYPDILAKLD 579
Query: 1025 EFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFD 1084
+ KP +F+LD E VA D + K++ FQ+L +R++ KD + I+ VKV +CVF FD
Sbjct: 580 SWVKPETKSFVLDCETVAWDVQEK-KVLPFQQLMTRKK--KD--VKIEDVKVKVCVFAFD 634
Query: 1085 IMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNF 1144
+++ NGE ++ +LR+RR L+ F + G F YA M G + L +I F
Sbjct: 635 LLYLNGEAVVEKSLRERRTLLESSFKPIE-GEFAYATHMN--GQE--------LDEIQTF 683
Query: 1145 LEEALHSSCEGIIVKSLD-VDAGYSPSKRSDSW 1176
L+E++ +SCEG++VK LD ++GY PSKRS +W
Sbjct: 684 LDESVKASCEGLMVKMLDGTESGYEPSKRSRNW 716
Score = 473 (171.6 bits), Expect = 2.0e-41, P = 2.0e-41
Identities = 151/506 (29%), Positives = 240/506 (47%)
Query: 521 KRKKTVTNNPKKKGKVPSKMESSGAKQPTITS--FFNKLLPNMSQGDVVESKSEECPKDE 578
K K V ++P ++ S ++ K+P + S NK P + D V++K P D+
Sbjct: 43 KDKDEVVSSPGTNDELASDQDTK--KRPRVLSATVTNKSSPK-GKSDAVKNKE---PDDQ 96
Query: 579 NPLQSNAIKTYGE-EIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYDNQEGDRG 637
P A ++ E D+ +++ + +K A + +K + D+
Sbjct: 97 EPPVKKARRSRKVVEEDEDDEVM---DDVKAEATASDQDSKPAKRQRSPWVKKEAKEDKS 153
Query: 638 KTVNR--LEFSKSSVQSDSCNKD---CSSALEKIVSE---ELQHITDMSVQRPS-----K 684
K V +K+S + K+ SA E SE EL+ D ++P+ +
Sbjct: 154 KLVKDEPTRTTKASKSGKAAVKEEDGDGSAKEVSASESASELEDEIDEEDEKPTVAAKLR 213
Query: 685 ELMDPTLVSLPPEKYDPIEHACWSSGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRS 744
+ + TL L P DP + W G+P PY L TF LVE ++ + R
Sbjct: 214 KTVQKTL--LQPTTKDP--YPDWKPGEPVPYAALCTTFSLVELTTKRLIIIEHCSRFLRQ 269
Query: 745 LLALSPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGD 804
+L L+P+D+LP V L NK+A+++ IEL IG SL+ AI E+ G + + I+ +GD
Sbjct: 270 VLKLTPEDLLPTVLLMINKLAADYAGIELGIGESLIMKAIGESTGRSLAIIKQDQREIGD 329
Query: 805 LGDVAQECRQTQXXXXXXXXXXIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSC---- 860
LG VA + R TQ ++ V++ L I+ TG+G+ RK +I L+ +
Sbjct: 330 LGLVAVKSRSTQPTMFKPKPLTVRGVFAGLTNIATITGNGAQGRKVDIIKKLLSAADVNN 389
Query: 861 -------REK----EMKFLVRTLVRNLRIGAMMRTILPALAQAVVMNSSLEFSHEGKMEN 909
++K E KF+VR L LR+G RT+LP+LAQAV+ + S S +G + +
Sbjct: 390 AGKVDISKDKGGPSEAKFIVRFLEGKLRLGLAERTVLPSLAQAVIAHES---SKKGTIPS 446
Query: 910 LKEKLQSLSAAAVEAYNXXXXXXXXXXXXMNKGIGFSASTLSMVPGVPIKPMLAKITNGV 969
+ ++ Y+ + GI + PG+P+KPMLAK T +
Sbjct: 447 TSD-VEKAEQMLKTVYSELPSYEVIIPALLEHGIMNLKDNCKLRPGIPLKPMLAKPTKAI 505
Query: 970 PQVLKLFQNKAFTCEYKYDGQRAQIH 995
+VL F+N+ FTCEYKYDG+RAQIH
Sbjct: 506 TEVLDRFENQTFTCEYKYDGERAQIH 531
Score = 47 (21.6 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 334 LREYVKFLKPKRVIPTVGMDIEKLDSKHA 362
LR+ +K L P+ ++PTV + I KL + +A
Sbjct: 267 LRQVLK-LTPEDLLPTVLLMINKLAADYA 294
Score = 40 (19.1 bits), Expect = 7.6e-44, Sum P(2) = 7.6e-44
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 90 EITSRLLSQILNINPKFIYP 109
E SR L Q+L + P+ + P
Sbjct: 261 EHCSRFLRQVLKLTPEDLLP 280
Score = 40 (19.1 bits), Expect = 7.6e-44, Sum P(2) = 7.6e-44
Identities = 20/94 (21%), Positives = 38/94 (40%)
Query: 494 EHETQLYEQEYKLPTIKHSIKSTLSPSKRKK----TVTNNPKKKGKVPS-KMESSGAKQP 548
E E + ++ P + S KR + TVTN KGK + K + ++P
Sbjct: 39 EKEEKDKDEVVSSPGTNDELASDQDTKKRPRVLSATVTNKSSPKGKSDAVKNKEPDDQEP 98
Query: 549 TITSF--FNKLLPNMSQGDVVES-KSEECPKDEN 579
+ K++ +V++ K+E D++
Sbjct: 99 PVKKARRSRKVVEEDEDDEVMDDVKAEATASDQD 132
>UNIPROTKB|Q7S2S0 [details] [associations]
symbol:NCU09706 "DNA ligase" species:367110 "Neurospora
crassa OR74A" [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0005694 "chromosome"
evidence=IBA] [GO:0006266 "DNA ligation" evidence=IBA] [GO:0006273
"lagging strand elongation" evidence=IBA] [GO:0006289
"nucleotide-excision repair" evidence=IBA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524 GO:GO:0005634
GO:GO:0005694 GO:GO:0003677 GO:GO:0006310 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006289 GO:GO:0006273
eggNOG:COG1793 HOGENOM:HOG000036006 KO:K10747 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 OrthoDB:EOG4SFDF2 EMBL:AABX02000084
RefSeq:XP_958945.2 ProteinModelPortal:Q7S2S0
EnsemblFungi:EFNCRT00000009526 GeneID:3875111 KEGG:ncr:NCU09706
OMA:MSGFTDS Uniprot:Q7S2S0
Length = 853
Score = 372 (136.0 bits), Expect = 4.2e-44, Sum P(4) = 4.2e-44
Identities = 81/207 (39%), Positives = 127/207 (61%)
Query: 956 VPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSR 1015
+P++PML IT + ++L Q + F CEYKYDGQRAQIH G V IFSR+ + T +
Sbjct: 370 IPLRPMLGGITRDLSEMLSRLQGRDFACEYKYDGQRAQIHCDDRGVVSIFSRHLELMTDK 429
Query: 1016 FPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVK 1075
+PDL++++ + +FI++ EVVA+DR G ++ +FQ L++R R KD + I ++
Sbjct: 430 YPDLVALVPKIRGEDVQSFIMEGEVVAVDRATG-ELKNFQTLTNRAR--KD--VAIGAIT 484
Query: 1076 VDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSD 1135
+D+C+F FD+M+ NG+ LL + R+RR L+ LF E +F + K + + S+
Sbjct: 485 IDVCLFAFDLMYLNGQPLLNRSFRERRDMLRSLFM-EIPHHFTWVKSIDATSQE----SE 539
Query: 1136 VSLSKINNFLEEALHSSCEGIIVKSLD 1162
+ L F + A+ S CEGI+VK LD
Sbjct: 540 IVLE----FFKSAVDSKCEGIMVKILD 562
Score = 119 (46.9 bits), Expect = 4.2e-44, Sum P(4) = 4.2e-44
Identities = 29/80 (36%), Positives = 42/80 (52%)
Query: 687 MDPTLVSLPPEKYDPIEHACWSS-GQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSL 745
+D + ++ P KY P W++ G A Y L R F LV + +IK + L N R L
Sbjct: 152 LDESPLTFNPSKYIPQLQESWATDGGDASYALLIRCFVLVSSTTSRIKIVDTLVNCVRLL 211
Query: 746 LALSPDDVLPAVYLCTNKIA 765
+ P +LPAV+L TN I+
Sbjct: 212 IEGDPSSLLPAVWLATNAIS 231
Score = 107 (42.7 bits), Expect = 4.2e-44, Sum P(4) = 4.2e-44
Identities = 28/85 (32%), Positives = 47/85 (55%)
Query: 795 IRDMYNRLGDLGDVAQECRQTQXXXXXXXX-XXIKDVYSMLCKISVQTGSGSTARKKSLI 853
++ + ++LGD GDVA E ++ Q IK V+ L KIS G GS K+ ++
Sbjct: 235 LKALNDKLGDPGDVAFEAKKKQSFTLRKPKPLTIKGVFQSLVKISKTQGQGSGDAKQRIV 294
Query: 854 VNLMCSCRE-KEMKFLVRTLVRNLR 877
L+ R +E +++VRTL ++L+
Sbjct: 295 DKLLQDARGGEESRYVVRTLCQHLK 319
Score = 52 (23.4 bits), Expect = 3.4e-37, Sum P(4) = 3.4e-37
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 5 PSDKN-LTLDSTHLFLSTQSSPPDSLIFPPIPRTFPPSKHVP 45
P KN L+L S +T+ S+ P TF PSK++P
Sbjct: 128 PKGKNTLSLSSA---AATEDQASASIPLDESPLTFNPSKYIP 166
Score = 45 (20.9 bits), Expect = 4.2e-44, Sum P(4) = 4.2e-44
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 1165 AGYSPSKRSDSW 1176
A Y P KR DSW
Sbjct: 637 ATYEPDKRLDSW 648
Score = 37 (18.1 bits), Expect = 1.2e-35, Sum P(4) = 1.2e-35
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 560 NMSQGDVVESK-SEECPKDENPLQSNAIK 587
++S E + S P DE+PL N K
Sbjct: 135 SLSSAAATEDQASASIPLDESPLTFNPSK 163
>ZFIN|ZDB-GENE-050522-124 [details] [associations]
symbol:dclre1a "DNA cross-link repair 1A (PSO2
homolog, S. cerevisiae)" species:7955 "Danio rerio" [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR001279 SMART:SM00849
ZFIN:ZDB-GENE-050522-124 GO:GO:0016787 InterPro:IPR011084
Pfam:PF07522 GeneTree:ENSGT00530000063183 EMBL:CU695011
IPI:IPI00829229 Ensembl:ENSDART00000075876 ArrayExpress:F1QNK4
Bgee:F1QNK4 Uniprot:F1QNK4
Length = 904
Score = 497 (180.0 bits), Expect = 4.9e-44, P = 4.9e-44
Identities = 114/335 (34%), Positives = 178/335 (53%)
Query: 32 PPIPRTFPPSKHVPNTRFLIDAFRYAADFSVS-YFLSHFHSDHYTGLSPSWSKGIIFCSE 90
P P+ P K +P T F +DAF+Y V+ YFL+HFHSDHY GL S I+C++
Sbjct: 557 PKEPKRCPFYKKIPGTGFAVDAFQYGVVEGVTAYFLTHFHSDHYGGLKKD-SAVPIYCNK 615
Query: 91 ITSRLLSQILNINPKFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFER 150
+TS L+ L ++ ++I+ LP+ ++ G +V L+ ANHCPGA LF +P +G +
Sbjct: 616 VTSNLVKSKLKVDEQYIHVLPMNTECIVQGVKVTLLDANHCPGAAMLLFVLP--DG--QT 671
Query: 151 YVHTGDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQXXXXXXXXXXXXXXXX 210
+HTGDFR +M P + ++LDTTYC+P++ FP Q
Sbjct: 672 VLHTGDFRADPSMERYPELQGLR-IQTLYLDTTYCSPEYTFPTQQEVVTFAVNTAFERVT 730
Query: 211 XXXXXLQKRVLFLVATYVIGKEKILIEIFKKCGRKVCVDSRKMEVLRVLGYGDSGV-FTE 269
L R L + TY +GKEK+ + + + KVC+ K + L D G T
Sbjct: 731 -----LNPRTLVVCGTYSVGKEKVFLAVSEVLSSKVCLSKDKYNTMCCLESEDIGQRITT 785
Query: 270 DESETDVHVVGWNEIMVE----------RGYDKVVGFVPTGWTYE--VKRNKFAVRSKDA 317
+ VHV+ +I + + YD++V F PTGWT+ V + +++
Sbjct: 786 NWQSAQVHVLPMMQINFKNLQTHLKKFSKKYDQLVAFKPTGWTFNQTVGVDDILPQTQGN 845
Query: 318 FEIHLVPYSEHSNYDELREYVKFLKPKRVIPTVGM 352
I+ +PYSEHS++ EL+ +V++L+PK++IPTV +
Sbjct: 846 ISIYGIPYSEHSSFLELKRFVQWLRPKKIIPTVNV 880
>DICTYBASE|DDB_G0277755 [details] [associations]
symbol:dclre1 "DNA repair metallo-beta-lactamase
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0008408 "3'-5' exonuclease activity" evidence=ISS] [GO:0006289
"nucleotide-excision repair" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA;IC] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
dictyBase:DDB_G0277755 GO:GO:0005634 GenomeReviews:CM000151_GR
EMBL:AAFI02000022 GO:GO:0008408 GO:GO:0006289 eggNOG:COG1236
KO:K15340 InterPro:IPR011084 Pfam:PF07522 RefSeq:XP_642494.1
HSSP:Q9UPQ7 ProteinModelPortal:Q86KS1 EnsemblProtists:DDB0232254
GeneID:8621205 KEGG:ddi:DDB_G0277755 InParanoid:Q86KS1
Uniprot:Q86KS1
Length = 920
Score = 498 (180.4 bits), Expect = 2.1e-43, Sum P(2) = 2.1e-43
Identities = 121/339 (35%), Positives = 179/339 (52%)
Query: 32 PPIPRTFPPS-KHVPNTRFLIDAFRYAADFSVSYFLSHFHSDHYTGLSPSWSKGIIFCSE 90
P + PPS K + T FL+D F+Y ++ YFL+HFHSDHY G++ +WS G I+C+E
Sbjct: 253 PTKEKKIPPSFKVIDGTNFLVDGFQYKSEDFTHYFLTHFHSDHYVGITKTWSFGNIYCTE 312
Query: 91 ITSRLLSQILNINPKFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRN--G-- 146
T +L+S L ++ ++I + I G +V + +NHCPG+ LF +P RN G
Sbjct: 313 ETGKLVSHKLGVDQRYIVKCEWNKLIEIQGVKVAFLDSNHCPGSALILFIIPLRNKDGEI 372
Query: 147 -GFERYVHTGDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQXXXXXXXXXXX 205
G E +HTGDFR+ ++M P++ ++LD TYC+P+++FP Q
Sbjct: 373 IGEESILHTGDFRYNQSMNNYPLLKGRT-ISKLYLDNTYCDPQYVFPPQPEIIKQVASIV 431
Query: 206 XXXXXXXXXXLQKRVLFLVATYVIGKEKILIEIFKKCGRKVCVDSRKMEVLRVLGYG-DS 264
LFL TYVIGKE+IL+EI K+ G+ V V + K +L L D
Sbjct: 432 RKENDG-------ETLFLFGTYVIGKERILLEIAKQEGKPVHVSNEKYAILCCLSTCLDI 484
Query: 265 GVFTEDESETDVHVVGWNEI----MVE------RGYDKVVGFVPTGWTYEVKRNKFAVRS 314
FT +E T V + + M+ Y +V+GF PTGWT K + R
Sbjct: 485 NKFTTNELITPFRAVTMSMLSYHNMLSLLDSSNNKYKRVIGFRPTGWTQAKKSITYLNRG 544
Query: 315 KDAFEIHLVPYSEHSNYDELREYVKFLKPKRVIPTVGMD 353
F + V YSEHS+++ELR+ + +P ++IPTV D
Sbjct: 545 PTTF--YSVAYSEHSSFNELRDCIDHFRPTQIIPTVDCD 581
Score = 43 (20.2 bits), Expect = 2.1e-43, Sum P(2) = 2.1e-43
Identities = 19/51 (37%), Positives = 25/51 (49%)
Query: 507 PTIKHSIKSTL-SPSKRKKTVTNNPKKKGKVPSKMESSGAKQPTITSFFNK 556
PT +S S+ S KR K+ N KK ++ + S Q ITSFF K
Sbjct: 829 PTSYNSNNSSQQSGLKRSKSDPN--VKKNQLQTSQPPS---QSLITSFFQK 874
Score = 43 (20.2 bits), Expect = 3.4e-43, Sum P(3) = 3.4e-43
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 546 KQPTITSFFN-KLLPNMSQGDVVESKSEECPKDEN 579
KQ TI SFF+ + + N Q +SKSE ++N
Sbjct: 601 KQLTIASFFSAQPVTNFFQS-FFKSKSEPIIDEDN 634
Score = 42 (19.8 bits), Expect = 3.4e-43, Sum P(3) = 3.4e-43
Identities = 18/65 (27%), Positives = 26/65 (40%)
Query: 598 KIINGNESLKGYAATLLEKTKGNVSMALDLYYD-NQEGDRGKTVNRLEFSKSSVQSDSCN 656
+I N N + T KT GN+S L Q + T N + ++V S N
Sbjct: 774 QIYNNNNNSNNNNFTTPTKTNGNLSNNAKLNLTPTQTQTQTPTQNNKKQKTTNVSPTSYN 833
Query: 657 KDCSS 661
+ SS
Sbjct: 834 SNNSS 838
>POMBASE|SPAC22A12.01c [details] [associations]
symbol:pso2 "DNA 5' exonuclease (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003684 "damaged DNA
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0006281 "DNA repair" evidence=IMP] [GO:0008409 "5'-3'
exonuclease activity" evidence=ISO] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001279 SMART:SM00849
PomBase:SPAC22A12.01c GO:GO:0005634 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0003684 GO:GO:0006281
eggNOG:COG1236 GO:GO:0008409 KO:K15340 InterPro:IPR011084
Pfam:PF07522 PIR:T38927 RefSeq:NP_593231.2
ProteinModelPortal:Q10264 STRING:Q10264
EnsemblFungi:SPAC22A12.01c.1 GeneID:2541503 KEGG:spo:SPAC22A12.01c
OMA:SEHSSFK OrthoDB:EOG4M68SB NextBio:20802602 Uniprot:Q10264
Length = 560
Score = 457 (165.9 bits), Expect = 4.1e-42, P = 4.1e-42
Identities = 104/289 (35%), Positives = 157/289 (54%)
Query: 39 PPSKHVP-NTRFLIDAFRYAA-DFSVSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLL 96
P K +P N F +DAF Y A D +YFLSHFHSDHY GL+P W G I+CSE+T LL
Sbjct: 184 PFYKLMPYNIPFAVDAFAYGAIDGVEAYFLSHFHSDHYGGLTPKWKHGPIYCSEVTGNLL 243
Query: 97 SQILNINPKFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGD 156
+++++ +++ L + P I G V ++ ANHCPG+ F+F+ N R +H GD
Sbjct: 244 INVMHVDEQYVKRLKLNQPYNIMGITVYVLDANHCPGSAMFVFETLQSNQT-RRVLHCGD 302
Query: 157 FRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQXXXXXXXXXXXXXXXXXXXXXL 216
FR K ++ PV+ E V+LDTTY NPK+ FP Q
Sbjct: 303 FRASKDHVMHPVLREKT-IHKVYLDTTYLNPKYTFPPQADVVQACADKAISIKKST---- 357
Query: 217 QKRVLFLVATYVIGKEKILIEIFKKCGRKVCVDSRKMEVLRVLGYGDS-GVFTEDESETD 275
R+L +V+TY IGKEK+ + I K ++ V RKM +++ L D + T+D ++
Sbjct: 358 DSRLLVVVSTYSIGKEKVAVAIAKSLSSRIYVVPRKMHIIKQLENQDLIDLLTDDPTQAS 417
Query: 276 VHVVGW-----NEIM--VER---GYDKVVGFVPTGWTYEVKRNKFAVRS 314
VH+V N ++ +E+ +DK++G+ TGWT++ N+ + S
Sbjct: 418 VHMVTMMGIHPNSLLDYLEQYNSSFDKIIGYKVTGWTFQPLENRAQLSS 466
>TAIR|locus:2043689 [details] [associations]
symbol:AT2G45700 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0007062 "sister chromatid cohesion"
evidence=RCA] [GO:0009630 "gravitropism" evidence=RCA] [GO:0031048
"chromatin silencing by small RNA" evidence=RCA] [GO:0045132
"meiotic chromosome segregation" evidence=RCA] InterPro:IPR001279
InterPro:IPR001660 PROSITE:PS50105 SMART:SM00454 SMART:SM00849
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0016787
Gene3D:1.10.150.50 InterPro:IPR013761 InterPro:IPR021129
Pfam:PF00536 SUPFAM:SSF47769 EMBL:AC003680 EMBL:AC004665
eggNOG:COG1236 KO:K15340 InterPro:IPR011084 Pfam:PF07522
HSSP:P39769 EMBL:BT005774 EMBL:BT006104 EMBL:AK228444
IPI:IPI00544610 PIR:T00883 RefSeq:NP_182094.1 UniGene:At.36606
ProteinModelPortal:O64649 SMR:O64649 PRIDE:O64649
EnsemblPlants:AT2G45700.1 GeneID:819178 KEGG:ath:AT2G45700
TAIR:At2g45700 HOGENOM:HOG000030436 InParanoid:O64649 OMA:TIIRYEV
PhylomeDB:O64649 ProtClustDB:CLSN2683367 ArrayExpress:O64649
Genevestigator:O64649 Uniprot:O64649
Length = 723
Score = 466 (169.1 bits), Expect = 4.1e-41, P = 4.1e-41
Identities = 111/333 (33%), Positives = 175/333 (52%)
Query: 36 RTFPPSKHVPNTRFLIDAFRYAADFSVSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSRL 95
+ P +P T F +DAF+Y +FL+HFH DHY GL+ S+S G I+CS +T++L
Sbjct: 390 KVIPHWNCIPGTPFRVDAFKYLTRDCCHWFLTHFHLDHYQGLTKSFSHGKIYCSLVTAKL 449
Query: 96 LSQILNINPKFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTG 155
++ + I + + L + V I G +V ANHCPG++ LF+ P NG + +HTG
Sbjct: 450 VNMKIGIPWERLQVLDLGQKVNISGIDVTCFDANHCPGSIMILFE-PA-NG--KAVLHTG 505
Query: 156 DFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQXXXXXXXXXXXXXXXXXXXXX 215
DFR+ + M + + + ++ LDTTYCNP++ FP Q
Sbjct: 506 DFRYSEEMSNWLIGSHIS---SLILDTTYCNPQYDFPKQEAVIQFVVEAIQAEA------ 556
Query: 216 LQKRVLFLVATYVIGKEKILIEIFKKCGRKVCVDSRKMEVLRVLGYGDSGV--FTEDESE 273
+ LFL+ +Y IGKE++ +E+ + K+ ++ K+++L LG+ + FT E E
Sbjct: 557 FNPKTLFLIGSYTIGKERLFLEVARVLREKIYINPAKLKLLECLGFSKDDIQWFTVKEEE 616
Query: 274 TDVHVVG-WNEIMVER----------GYDKVVGFVPTGWTYEVKRNKFAVRSKDAFEI-- 320
+ +HVV W +R Y +V F PTGWT + K R I
Sbjct: 617 SHIHVVPLWTLASFKRLKHVANRYTNRYSLIVAFSPTGWTSGKTKKKSPGRRLQQGTIIR 676
Query: 321 HLVPYSEHSNYDELREYVKFLKPKRVIPTVGMD 353
+ VPYSEHS++ EL+E+V+ + P+ +IP+V D
Sbjct: 677 YEVPYSEHSSFTELKEFVQKVSPEVIIPSVNND 709
>FB|FBgn0037338 [details] [associations]
symbol:Snm1 "Snm1" species:7227 "Drosophila melanogaster"
[GO:0006281 "DNA repair" evidence=ISS] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001279 SMART:SM00849
EMBL:AE014297 GO:GO:0016787 eggNOG:COG1236 KO:K15340
InterPro:IPR011084 Pfam:PF07522 GeneTree:ENSGT00530000063183
EMBL:AY058585 RefSeq:NP_649548.1 UniGene:Dm.13655 SMR:Q9VND2
MINT:MINT-1328399 STRING:Q9VND2 EnsemblMetazoa:FBtr0078688
GeneID:40669 KEGG:dme:Dmel_CG10018 UCSC:CG10018-RA CTD:40669
FlyBase:FBgn0037338 InParanoid:Q9VND2 OMA:QPSISTF OrthoDB:EOG47H451
GenomeRNAi:40669 NextBio:819942 Uniprot:Q9VND2
Length = 763
Score = 461 (167.3 bits), Expect = 2.1e-40, P = 2.1e-40
Identities = 128/398 (32%), Positives = 196/398 (49%)
Query: 35 PRTFPPSKHVPNTRFLIDAFRYAADFSVS-YFLSHFHSDHYTGLSPSWSKGIIFCSEITS 93
P+ PP K V T F +D F++ V+ YFL+HFH+DHY GL+ + + + S I++
Sbjct: 261 PKPCPPYKVVEGTSFCVDGFQFGEIEGVTHYFLTHFHADHYIGLTKKFCHPL-YVSPISA 319
Query: 94 RLLSQILNINPKFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVH 153
RL+ + ++ I+ + + + +DG +V + ANHCPGA+ F FK+ + G E +H
Sbjct: 320 RLVRTFIKLDETHIHEIDVDQTLDVDGVQVTALEANHCPGALMFFFKL---SSG-ECILH 375
Query: 154 TGDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQXXXXXXXXXXXXXXXXXXX 213
TGDFR M P+ + D ++LDTTY N + F Q
Sbjct: 376 TGDFRASADMESLPIFWNHSNIDLLYLDTTYMNKNYDFCHQSESVDRAVDLVRAFLEKNA 435
Query: 214 XXLQKRVLFLVATYVIGKEKILIEIFKKCGRKVCVDSRKMEVLRVLGYGD-SGVFTEDES 272
KR+L + +YVIGKEKI + + K+ +V +S + +R L + D V TED S
Sbjct: 436 A---KRILIVCGSYVIGKEKIWLALAKEFTMRVWTESNRSTAVRCLNWPDLDSVLTEDRS 492
Query: 273 ETDVHVVGWNEI----MV------ERGYDKVVGFVPTGWTYEVKRNKFAVRSKDAFEIHL 322
++HV+ +I +V E YD ++G P+GW ++N K I
Sbjct: 493 GANLHVIAMGKISYPSLVDYFTEFEDQYDMLLGIRPSGW----EKNSKPSYGKRISTIG- 547
Query: 323 VPYSEHSNYDELREYVKFLKPKRVIPTV--GMDIE----------KLDSKHANKMRKYFA 370
+ YSEHS+Y EL +V+FLKPKRVI TV G D+ K + + A+ +R F
Sbjct: 548 IEYSEHSSYKELERFVRFLKPKRVISTVPVGRDLYVTGEVPIRWYKYEGR-ASMLRTGFQ 606
Query: 371 GLVDE-MASKKEFLMGFHRGTSEIDENVEEGAGSGSNE 407
+ +A+ K F T V+E A GS +
Sbjct: 607 PSISTFLATPKRAFAKFSADTEMFLSPVDENASKGSED 644
>UNIPROTKB|Q7RYJ3 [details] [associations]
symbol:NCU06481 "DNA ligase" species:367110 "Neurospora
crassa OR74A" [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0005694 "chromosome"
evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA] [GO:0006266
"DNA ligation" evidence=IBA] [GO:0006273 "lagging strand
elongation" evidence=IBA] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006289
GO:GO:0006273 eggNOG:COG1793 HOGENOM:HOG000036006 KO:K10747
GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 OrthoDB:EOG4RV60K EMBL:AABX02000027 OMA:ETICNIG
RefSeq:XP_957121.1 UniGene:Ncr.25681 ProteinModelPortal:Q7RYJ3
STRING:Q7RYJ3 EnsemblFungi:EFNCRT00000006215 GeneID:3873294
KEGG:ncr:NCU06481 Uniprot:Q7RYJ3
Length = 923
Score = 461 (167.3 bits), Expect = 4.4e-40, Sum P(2) = 4.4e-40
Identities = 111/333 (33%), Positives = 186/333 (55%)
Query: 864 EMKFLVRTLVRNLRIGAMMRTILPALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVE 923
E KF+VR L LR+G ++++ +LAQA++ + EF+ +GK+ + + +
Sbjct: 431 EAKFIVRFLEGKLRLGLAEKSVIVSLAQAMIAH---EFAQKGKIPS-ESDFSKAESILKT 486
Query: 924 AYNXXXXXXXXXXXXMNKGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTC 983
Y+ + GI + PGVP+KPMLA T + +VL F+ + FTC
Sbjct: 487 VYSELPSYDVIIPAMLQHGIMNLREHCKLRPGVPLKPMLANPTKAITEVLDRFEGQTFTC 546
Query: 984 EYKYDGQRAQIHKLVD-------------------GTVRIFSRNGDETTSRFPDLISIIN 1024
EYKYDG+RAQIH + G IFSRN ++ + ++PD+++ +
Sbjct: 547 EYKYDGERAQIHYVAKDVPKSEGDLSQVASKDTGKGVAAIFSRNSEDLSQKYPDVLAKLP 606
Query: 1025 EFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFD 1084
+ K +F+LD E VA D + K++ FQ+L +R++ KD + ++ VKV +CVF FD
Sbjct: 607 TWVKEGTKSFVLDCESVAWDTVDK-KVLPFQQLMTRKK--KD--VKLEDVKVKVCVFAFD 661
Query: 1085 IMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNF 1144
+++ NG+ ++ +LR+RR+ L++ F + G F +A M +G + L +I +F
Sbjct: 662 LLYLNGQAVVEKSLRERRELLREAFKPVE-GEFAFATSM--DGQE--------LDEIQSF 710
Query: 1145 LEEALHSSCEGIIVKSLD-VDAGYSPSKRSDSW 1176
L+E++ + CEG++VK LD ++GY PSKRS +W
Sbjct: 711 LDESVKAGCEGLMVKMLDGAESGYEPSKRSRNW 743
Score = 428 (155.7 bits), Expect = 2.0e-36, Sum P(2) = 2.0e-36
Identities = 116/367 (31%), Positives = 185/367 (50%)
Query: 646 SKSSVQSDSCNKDCSSALEKIVSEELQHITDMSVQRPSKELMDPTLVSLPPEKYDPIEHA 705
S + V+ + + S++ +I +EE D + +KE +L + DP +
Sbjct: 201 SPAPVEKANDAEASSASASEIEAEEEDE--DEKTEAVAKEARKVIQTTLATKVKDP--YP 256
Query: 706 CWSSGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMF-RSLLALSPDDVLPAVYLCTNKI 764
W +G+P PY L TF L+E R ++ M C++F R +L L+PDD+LP V L NK+
Sbjct: 257 DWKAGEPVPYAALCTTFSLIEQTRKRLLIMEY-CSLFLRQVLRLTPDDLLPTVLLMINKL 315
Query: 765 ASNHENIELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQXXXXXXXX 824
A ++ IEL IG SL+ AI E G + + +++ +GDLG VA + R Q
Sbjct: 316 APDYAGIELGIGESLIMKAIGETTGRSIAVVKNDQKEIGDLGLVAVKSRSKQPTMFKPKP 375
Query: 825 XXIKDVYSMLCKISV-QTGSGSTARKKSLIVNLMCSC-----------REK----EMKFL 868
I+ V+ L I+ TG+G+ +K I L+ + ++K E KF+
Sbjct: 376 LTIRGVHKGLMDIATTMTGTGAQQKKVDGIKKLLSAADANSTGKVDITKDKGGPSEAKFI 435
Query: 869 VRTLVRNLRIGAMMRTILPALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNXX 928
VR L LR+G ++++ +LAQA++ + EF+ +GK+ + + + Y+
Sbjct: 436 VRFLEGKLRLGLAEKSVIVSLAQAMIAH---EFAQKGKIPS-ESDFSKAESILKTVYSEL 491
Query: 929 XXXXXXXXXXMNKGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYD 988
+ GI + PGVP+KPMLA T + +VL F+ + FTCEYKYD
Sbjct: 492 PSYDVIIPAMLQHGIMNLREHCKLRPGVPLKPMLANPTKAITEVLDRFEGQTFTCEYKYD 551
Query: 989 GQRAQIH 995
G+RAQIH
Sbjct: 552 GERAQIH 558
Score = 51 (23.0 bits), Expect = 4.4e-40, Sum P(2) = 4.4e-40
Identities = 35/200 (17%), Positives = 69/200 (34%)
Query: 379 KKEFLMGFHRGTSEIDENVEEGAGSGSNEGLSKEGEVKSKKTKATEXXXXXXXXXXXXRL 438
KK+ + G G E+++ VEE ++ +K G + + K E
Sbjct: 47 KKDEIAGEDGGHEEVEKKVEEM--KIKDKSPAKTGRGRGRPAKGKEVAKEVAKEKSSAEE 104
Query: 439 EEFGSKDVTALDDEETEKMVQEIRNCLPTWVTQNQILDLISSSGRNIVDAVSNFYEHETQ 498
+E +V EET + R+ PT + ++ A
Sbjct: 105 DE-DVMEVVEEVKEETGNKKKRSRS--PTTKSPKSKKAKTEEDSEDVAPASKRSRRSRKV 161
Query: 499 LYEQEYKLPTIKHSIKSTLSPSKRKKTVTNNP--KKKGKVPSKMESSGAKQPTITSFFNK 556
+ + E + + + + K KK + P KKK P+ +E + + + S
Sbjct: 162 VEDDEDETMEDVPASSAPVKEEKSKKAASPKPALKKKSSSPAPVEKANDAEASSASASEI 221
Query: 557 LLPNMSQGDVVESKSEECPK 576
+ + E+ ++E K
Sbjct: 222 EAEEEDEDEKTEAVAKEARK 241
Score = 43 (20.2 bits), Expect = 3.0e-39, Sum P(2) = 3.0e-39
Identities = 16/48 (33%), Positives = 22/48 (45%)
Query: 530 PKKK---GKVPSKMES-SGAKQPTITSFFNKLLPNMSQGDVVESKSEE 573
PK++ GK K ++ +G KQ T SF K S E K +E
Sbjct: 3 PKQQQTLGKFFGKADAPAGGKQQTKLSFGTKATSTTSSKTKEEPKKDE 50
Score = 40 (19.1 bits), Expect = 6.3e-39, Sum P(2) = 6.3e-39
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 334 LREYVKFLKPKRVIPTVGMDIEKLDSKHA 362
LR+ ++ L P ++PTV + I KL +A
Sbjct: 293 LRQVLR-LTPDDLLPTVLLMINKLAPDYA 320
Score = 39 (18.8 bits), Expect = 8.0e-39, Sum P(2) = 8.0e-39
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 450 DDEETEKMVQEIRNCLPT 467
+DE+TE + +E R + T
Sbjct: 228 EDEKTEAVAKEARKVIQT 245
>UNIPROTKB|F1NC75 [details] [associations]
symbol:DCLRE1A "DNA cross-link repair 1A protein"
species:9031 "Gallus gallus" [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] InterPro:IPR001279
SMART:SM00849 GO:GO:0005730 GO:GO:0016787 GO:GO:0006289
IPI:IPI00680526 InterPro:IPR011084 Pfam:PF07522 OMA:ECPDGLL
GeneTree:ENSGT00530000063183 EMBL:AADN02030915
Ensembl:ENSGALT00000033097 Uniprot:F1NC75
Length = 972
Score = 458 (166.3 bits), Expect = 1.1e-39, P = 1.1e-39
Identities = 113/357 (31%), Positives = 184/357 (51%)
Query: 39 PPSKHVPNTRFLIDAFRYAA-DFSVSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLLS 97
P K +P T F +DAF+Y + +YFL+HFHSDHY GL+ ++ + +C++IT L+
Sbjct: 631 PFYKKIPGTGFTVDAFQYGEIEGCTAYFLTHFHSDHYCGLTKNFVFPL-YCNKITGNLVK 689
Query: 98 QILNINPKFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDF 157
L + ++I LP+ +++G +V+L+ ANHCPGA LF +P +HTGDF
Sbjct: 690 SKLRVKEQYINVLPMDTECIVNGIKVLLLDANHCPGATMILFYLPSGTA----ILHTGDF 745
Query: 158 RFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQXXXXXXXXXXXXXXXXXXXXXLQ 217
R +M P + ++LDTTYC+P++ FP Q L
Sbjct: 746 RADPSMERYPALIG-QKIHTLYLDTTYCSPEYTFPSQQEVIQFAVNTAFEMVT-----LN 799
Query: 218 KRVLFLVATYVIGKEKILIEIFKKCGRKVCVDSRKMEVLRVL-GYGDSGVFTEDESETDV 276
R L + TY IGKEK+ + I + G K + K + L+ L + + T + T +
Sbjct: 800 PRTLVVCGTYSIGKEKVFLAIAEVLGSKASMSRDKYKTLQCLESAAVNSLITMNWDGTLL 859
Query: 277 HVV--------GWNEIM--VERGYDKVVGFVPTGWTYE---VKRNKFAVRSKDAFEIHLV 323
H++ G E + +D+V+ F PTGWTY + +++ I+ +
Sbjct: 860 HILPMMQINFKGLQEHLNKFSENFDQVLAFKPTGWTYSDSCLSVMDIKPQTRGNITIYGI 919
Query: 324 PYSEHSNYDELREYVKFLKPKRVIPTVGMDIEKLDSKHANKMRKYFAGLVDEMASKK 380
PYSEHS+Y E++ +V++LKP+++IPTV + D + + M K+F + E + K
Sbjct: 920 PYSEHSSYLEMKRFVQWLKPQKIIPTVNVG----DWRARSLMEKHFRDWMIEGSGHK 972
>UNIPROTKB|Q5QJC4 [details] [associations]
symbol:DCLRE1A "DNA cross-link repair 1A protein"
species:9031 "Gallus gallus" [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000715 "nucleotide-excision repair, DNA damage
recognition" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006281 "DNA repair" evidence=TAS] InterPro:IPR001279
SMART:SM00849 GO:GO:0005654 GO:GO:0016787 Reactome:REACT_115612
eggNOG:COG1236 EMBL:AY376896 IPI:IPI00680526 RefSeq:NP_001008683.1
UniGene:Gga.22844 ProteinModelPortal:Q5QJC4 STRING:Q5QJC4
GeneID:423902 KEGG:gga:423902 CTD:9937 HOGENOM:HOG000168450
HOVERGEN:HBG081418 InParanoid:Q5QJC4 KO:K15340 OrthoDB:EOG4F4SB1
NextBio:20826302 GO:GO:0000715 InterPro:IPR011084 Pfam:PF07522
Uniprot:Q5QJC4
Length = 972
Score = 457 (165.9 bits), Expect = 1.5e-39, P = 1.5e-39
Identities = 112/357 (31%), Positives = 184/357 (51%)
Query: 39 PPSKHVPNTRFLIDAFRYAA-DFSVSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLLS 97
P K +P T F +DAF+Y + +YFL+HFHSDHY GL+ ++ + +C++IT L+
Sbjct: 631 PFYKKIPGTGFTVDAFQYGEIEGCTAYFLTHFHSDHYCGLTKNFVFPL-YCNKITGNLVK 689
Query: 98 QILNINPKFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDF 157
L + ++I LP+ +++G +V+L+ ANHCPGA LF +P +HTGDF
Sbjct: 690 SKLRVKEQYINVLPMDTECIVNGIKVLLLDANHCPGATMILFYLPSGTA----ILHTGDF 745
Query: 158 RFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQXXXXXXXXXXXXXXXXXXXXXLQ 217
R +M P + ++LDTTYC+P++ FP Q L
Sbjct: 746 RADPSMERYPALIG-QKIHTLYLDTTYCSPEYTFPSQQEVIQFAVNTAFEMVT-----LN 799
Query: 218 KRVLFLVATYVIGKEKILIEIFKKCGRKVCVDSRKMEVLRVL-GYGDSGVFTEDESETDV 276
R L + TY IGKEK+ + I + G K + K + L+ L + + T + T +
Sbjct: 800 PRTLVVCGTYSIGKEKVFLAIAEVLGSKASMSRDKYKTLQCLESAAVNSLITMNWDGTLL 859
Query: 277 HVVGWNEIMVE----------RGYDKVVGFVPTGWTYE---VKRNKFAVRSKDAFEIHLV 323
H++ +I + +D+V+ F PTGWTY + +++ I+ +
Sbjct: 860 HILPMMQINFKGLQDHLNKFSENFDQVLAFKPTGWTYSDSCLSVMDIKPQTRGNITIYGI 919
Query: 324 PYSEHSNYDELREYVKFLKPKRVIPTVGMDIEKLDSKHANKMRKYFAGLVDEMASKK 380
PYSEHS+Y E++ +V++LKP+++IPTV + D + + M K+F + E + K
Sbjct: 920 PYSEHSSYLEMKRFVQWLKPQKIIPTVNVG----DWRARSLMEKHFRDWMIEGSGHK 972
>UNIPROTKB|Q8TSR7 [details] [associations]
symbol:lig1 "DNA ligase 1" species:188937 "Methanosarcina
acetivorans C2A" [GO:0003910 "DNA ligase (ATP) activity"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0006266
"DNA ligation" evidence=IBA] [GO:0006273 "lagging strand
elongation" evidence=IBA] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] HAMAP:MF_00407 InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
InterPro:IPR022865 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524
GO:GO:0005694 GO:GO:0051301 GO:GO:0046872 GO:GO:0003677
GO:GO:0007049 GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0006289 GO:GO:0006273 eggNOG:COG1793
KO:K10747 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 HSSP:P18858 EMBL:AE010299
RefSeq:NP_615688.1 ProteinModelPortal:Q8TSR7 GeneID:1472620
GenomeReviews:AE010299_GR KEGG:mac:MA0728 OMA:PAFENTT
ProtClustDB:CLSK281490 BioCyc:MACE188937:GI2O-796-MONOMER
Uniprot:Q8TSR7
Length = 580
Score = 260 (96.6 bits), Expect = 7.3e-32, Sum P(2) = 7.3e-32
Identities = 76/259 (29%), Positives = 123/259 (47%)
Query: 923 EAYNXXXXXXXXXXXXMNKGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFT 982
E+Y+ G G + S+ PG P+K MLA+ ++ + + K
Sbjct: 186 ESYSVCTDIGELAQTLAEHGAG-APGYFSIKPGRPVKSMLAQRVESFEELEERIKGKK-A 243
Query: 983 CEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILDAEVVA 1042
E KYDG+R QIHK D ++ FSR ++ T+++PD+I + E +A T +LD E+VA
Sbjct: 244 AEEKYDGERVQIHKAGD-EIKAFSRRLEDITAQYPDIIEAVRESI--SADTIVLDGEIVA 300
Query: 1043 ---IDRKNGC--KIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYT 1097
++++N + FQ L R R K V + K + VF FDI++ NGE LL T
Sbjct: 301 YAELEKENTRIEEFYPFQNLMQRRR--KYEVEKYRE-KCPVAVFFFDILYLNGESLLKKT 357
Query: 1098 LRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGII 1157
+RR L++ + G + E ++ ++ +F E + EGI+
Sbjct: 358 YPERRALLEE--HVNGSGIVHLTRRTVTE----------NIEELEDFFNETVEKGLEGIV 405
Query: 1158 VKSLDVDAGYSPSKRSDSW 1176
KS+ ++ Y KRS W
Sbjct: 406 AKSMSSNSVYEAGKRSWLW 424
Score = 175 (66.7 bits), Expect = 7.3e-32, Sum P(2) = 7.3e-32
Identities = 54/191 (28%), Positives = 89/191 (46%)
Query: 718 LARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENIELNIGG 777
LA F+ +E + + L F L D+V + YL I EN L I
Sbjct: 7 LAELFEELERITSHKEIVRKLAGFFGGLKG---DEVKDSAYLFLGSIGPAFENTTLGIKD 63
Query: 778 SLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQXXXXXXXXXXIKDVYSMLCKI 837
LVT AI A G + +++ Y R GDLGDVA E + + I++V+ L +I
Sbjct: 64 RLVTRAIAGAYGVSEEEVKKRYARAGDLGDVAFELSKKREASLT-----IEEVFKRLRQI 118
Query: 838 SVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQAVVMNS 897
+G GS +K L+ +++ +E K+++R ++ LR+G + +L A + A +
Sbjct: 119 KEASGKGSQEKKTGLLSDILQKATPEEGKYIIRIVLGRLRLGFGDQFLLEAFSIAFTGDK 178
Query: 898 SLEFSHEGKME 908
H GK++
Sbjct: 179 K----HAGKIK 185
Score = 42 (19.8 bits), Expect = 5.7e-18, Sum P(2) = 5.7e-18
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 771 IELNIGGSLVTSAIEEA-CGTNR--SKIRDMYNRLGDLGDVAQ 810
+ L G + A A G + KI++ Y+ D+G++AQ
Sbjct: 157 LRLGFGDQFLLEAFSIAFTGDKKHAGKIKESYSVCTDIGELAQ 199
>ZFIN|ZDB-GENE-061013-328 [details] [associations]
symbol:dclre1b "DNA cross-link repair 1B"
species:7955 "Danio rerio" [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=ISS]
[GO:0000781 "chromosome, telomeric region" evidence=IEA;ISS]
[GO:0005813 "centrosome" evidence=ISS] [GO:0008409 "5'-3'
exonuclease activity" evidence=ISS] [GO:0031627 "telomeric loop
formation" evidence=ISS] [GO:0031848 "protection from
non-homologous end joining at telomere" evidence=ISS] [GO:0031860
"telomeric 3' overhang formation" evidence=ISS] [GO:0000075 "cell
cycle checkpoint" evidence=ISS] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] InterPro:IPR001279
SMART:SM00849 ZFIN:ZDB-GENE-061013-328 GO:GO:0005634 GO:GO:0005813
GO:GO:0006281 GO:GO:0031848 GO:GO:0000781 GO:GO:0000075
eggNOG:COG1236 GO:GO:0008409 InterPro:IPR011084 Pfam:PF07522
GO:GO:0031860 GO:GO:0031627 CTD:64858 KO:K15341 OrthoDB:EOG43R3N5
EMBL:CT025875 EMBL:BC124809 IPI:IPI00806625 RefSeq:NP_001070751.1
UniGene:Dr.86618 ProteinModelPortal:B0V2S2 STRING:B0V2S2
Ensembl:ENSDART00000099692 GeneID:768137 KEGG:dre:768137
GeneTree:ENSGT00530000063183 HOGENOM:HOG000204482
HOVERGEN:HBG096227 InParanoid:Q08BA3 OMA:NHINIDV NextBio:20918457
Bgee:B0V2S2 Uniprot:B0V2S2
Length = 571
Score = 364 (133.2 bits), Expect = 2.9e-30, P = 2.9e-30
Identities = 103/318 (32%), Positives = 156/318 (49%)
Query: 42 KHVPNTRFLIDAFRYAADFSVS-YFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLLSQIL 100
K +P+T +D ++ V +FLSH HSDH GLS +WS I+CS +T++LL L
Sbjct: 4 KVLPDTPIAVDCWQLRKCLHVRLFFLSHMHSDHTCGLSSTWSHRPIYCSPLTAKLLRLKL 63
Query: 101 NINPKFIYPLPIKIP--VLID--GCE---VVLVGANHCPGAVQFLFKVPGRNGGFERYVH 153
I K+I PL I +++D G E V L+ ANHCPGAV FLF+ G F ++
Sbjct: 64 QIKQKWIRPLEIGQDHMLMLDDLGKERLTVNLIDANHCPGAVMFLFQ-----GYFGTRLY 118
Query: 154 TGDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQXXXXXXXXXXXXXXXXXXX 213
TGDFR+ +ML P + D ++LD T C+P P +
Sbjct: 119 TGDFRYTPSMLRVPCLQNHINIDVLYLDNTNCDPTRALPSRQQATQQIKQIIRDHPGYAV 178
Query: 214 XXLQKRVLFLVATYVIGKEKILIEIFKKCGRKVCVDSRKMEVLRVLGYGDSGVFTEDESE 273
++ Y +GKE +L+++ + V VD ++E LRVL D VFT D
Sbjct: 179 ---------VIGLYSLGKESLLVDLAMEFKTWVEVDRERLETLRVLQLPD--VFTTDSGA 227
Query: 274 TDVHVVGWNEIMVERGYDKVVGFVPTGWTYEVKRNKFAVRSKDAFEIHLVPYSEHSNYDE 333
+ VV N+ M+ ++ + T + + S +++VPYS+HS+Y E
Sbjct: 228 GRIRVV--NQSMISAS--NLMAWNKLQSTIAILPTSRPMVSCHP-NVYVVPYSDHSSYQE 282
Query: 334 LREYVKFLKPKRVIPTVG 351
L ++V L P ++P VG
Sbjct: 283 LEDFVSALSPISLVPIVG 300
>GENEDB_PFALCIPARUM|PF14_0711 [details] [associations]
symbol:PF14_0711 "hypothetical protein,
conserved" species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001279 SMART:SM00849 GO:GO:0016787 EMBL:AE014187
InterPro:IPR011084 Pfam:PF07522 RefSeq:XP_001348885.1
ProteinModelPortal:Q8IK95 EnsemblProtists:PF14_0711:mRNA
GeneID:812293 KEGG:pfa:PF14_0711 EuPathDB:PlasmoDB:PF3D7_1474300
HOGENOM:HOG000282173 ProtClustDB:CLSZ2431799 Uniprot:Q8IK95
Length = 860
Score = 206 (77.6 bits), Expect = 2.9e-28, Sum P(2) = 2.9e-28
Identities = 64/226 (28%), Positives = 108/226 (47%)
Query: 216 LQKRVLFLVATYVIGKEKILIEIFKKCGRKVCV-DSRKMEVLRVLGYGDS--GVFTEDES 272
++K+ LFL TY +GKEKI + + C K+ + +K +++ Y T+++
Sbjct: 626 IKKKTLFLFGTYNLGKEKIYLSLSDACNMKIYYKNEKKRKIIESFLYNKHILNKITDNKL 685
Query: 273 ETDVHVVGWN-----------------EIMVERGYDKVVGFVPTGWTYEVKRNKFAVRSK 315
E +H+V N + +E+ +D +PTGW VK KF+ +
Sbjct: 686 EAQIHIVDINYSYIFPKIDKRKFLNLIDEEIEKEFDSFYYIIPTGW---VK--KFSFYER 740
Query: 316 DAFEIHLVPYSEHSNYDELREYVKFLKPKRVIPTVGMDIEKLDSKHANKMRKYFAGLVDE 375
+ I L+PYSEHSN DEL+ +VK +KP ++PTV + EK + N Y L E
Sbjct: 741 NNISIFLIPYSEHSNLDELKNFVKSIKPCNILPTVFYN-EKEKTTILNIFNPYL-NLKKE 798
Query: 376 MASKKEFLMGFHRGTSEIDENVEEGAGSGSNEGLSKEGEVKSKKTK 421
+ S + + +E+ N ++ + +SKE +K+ K K
Sbjct: 799 VLSFFKIDETYGSKNNEVSPNKKK-MKVNEKKDVSKEDLLKNIKQK 843
Score = 203 (76.5 bits), Expect = 2.9e-28, Sum P(2) = 2.9e-28
Identities = 42/114 (36%), Positives = 76/114 (66%)
Query: 64 YFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLLSQILNINPKFIYPLPI-KIPVLIDGCE 122
+FL+HFH+DHYT ++ +++ + FCS+IT +LL I+ + K+++ L I KI L + +
Sbjct: 44 FFLTHFHADHYTNINKYFNENV-FCSQITKKLLVNIIEVQDKYVHNLKINKIYYLFN-FK 101
Query: 123 VVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFC--KTMLLQPVMNEFAG 174
V + ANHCPG+V F+ +NG + +HTGDFR+ ++ L++ +++ ++G
Sbjct: 102 VAFIDANHCPGSVIIYFEF--KNG--TKIIHTGDFRYSNIQSFLIKKLLS-YSG 150
Score = 55 (24.4 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 43/183 (23%), Positives = 72/183 (39%)
Query: 503 EYKLPTIKHSIKSTLSPSKRKKTVTNNPKKKGKVPSKMESSGAKQPTITSFFNKLLPNMS 562
E K T+K IK + S NN S SS + SF N N+
Sbjct: 526 EEKKETVK--IKMEKNDSNNNNNNNNNNNNNNNNNSSSSSSSSSSNNSNSFINHKHENIK 583
Query: 563 QGDVVESKSEECPKDENPLQSNAIKTYGEEIDQFLKIINGNESLKGYAATLLEKTK---G 619
Q D ++K + + SN I + E++++ + NE KG + +KT G
Sbjct: 584 QNDC-DTKYII---NSDTKYSN-IHMH-EKVNKLDLLTYVNEDKKG--EQIKKKTLFLFG 635
Query: 620 NVSMALD-LYYDNQEGDRGKTVNRLEFSKSSVQSDSCNKDCSSALEKIVSEELQ---HIT 675
++ + +Y + K + E + ++S NK L KI +L+ HI
Sbjct: 636 TYNLGKEKIYLSLSDACNMKIYYKNEKKRKIIESFLYNKHI---LNKITDNKLEAQIHIV 692
Query: 676 DMS 678
D++
Sbjct: 693 DIN 695
Score = 38 (18.4 bits), Expect = 9.4e-11, Sum P(2) = 9.4e-11
Identities = 11/50 (22%), Positives = 22/50 (44%)
Query: 613 LLEKTKGNVSMALDLYYDNQEGDRGKTVNRLEFSKSSVQSDSCNKDCSSA 662
+LE+ K V + ++ N + N + SS S S + + S++
Sbjct: 524 ILEEKKETVKIKMEKNDSNNNNNNNNNNNNNNNNNSSSSSSSSSSNNSNS 573
>UNIPROTKB|Q8IK95 [details] [associations]
symbol:PF14_0711 "DNA repair metallo-beta-lactamase
protein, putative" species:36329 "Plasmodium falciparum 3D7"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001279 SMART:SM00849 GO:GO:0016787
EMBL:AE014187 InterPro:IPR011084 Pfam:PF07522 RefSeq:XP_001348885.1
ProteinModelPortal:Q8IK95 EnsemblProtists:PF14_0711:mRNA
GeneID:812293 KEGG:pfa:PF14_0711 EuPathDB:PlasmoDB:PF3D7_1474300
HOGENOM:HOG000282173 ProtClustDB:CLSZ2431799 Uniprot:Q8IK95
Length = 860
Score = 206 (77.6 bits), Expect = 2.9e-28, Sum P(2) = 2.9e-28
Identities = 64/226 (28%), Positives = 108/226 (47%)
Query: 216 LQKRVLFLVATYVIGKEKILIEIFKKCGRKVCV-DSRKMEVLRVLGYGDS--GVFTEDES 272
++K+ LFL TY +GKEKI + + C K+ + +K +++ Y T+++
Sbjct: 626 IKKKTLFLFGTYNLGKEKIYLSLSDACNMKIYYKNEKKRKIIESFLYNKHILNKITDNKL 685
Query: 273 ETDVHVVGWN-----------------EIMVERGYDKVVGFVPTGWTYEVKRNKFAVRSK 315
E +H+V N + +E+ +D +PTGW VK KF+ +
Sbjct: 686 EAQIHIVDINYSYIFPKIDKRKFLNLIDEEIEKEFDSFYYIIPTGW---VK--KFSFYER 740
Query: 316 DAFEIHLVPYSEHSNYDELREYVKFLKPKRVIPTVGMDIEKLDSKHANKMRKYFAGLVDE 375
+ I L+PYSEHSN DEL+ +VK +KP ++PTV + EK + N Y L E
Sbjct: 741 NNISIFLIPYSEHSNLDELKNFVKSIKPCNILPTVFYN-EKEKTTILNIFNPYL-NLKKE 798
Query: 376 MASKKEFLMGFHRGTSEIDENVEEGAGSGSNEGLSKEGEVKSKKTK 421
+ S + + +E+ N ++ + +SKE +K+ K K
Sbjct: 799 VLSFFKIDETYGSKNNEVSPNKKK-MKVNEKKDVSKEDLLKNIKQK 843
Score = 203 (76.5 bits), Expect = 2.9e-28, Sum P(2) = 2.9e-28
Identities = 42/114 (36%), Positives = 76/114 (66%)
Query: 64 YFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLLSQILNINPKFIYPLPI-KIPVLIDGCE 122
+FL+HFH+DHYT ++ +++ + FCS+IT +LL I+ + K+++ L I KI L + +
Sbjct: 44 FFLTHFHADHYTNINKYFNENV-FCSQITKKLLVNIIEVQDKYVHNLKINKIYYLFN-FK 101
Query: 123 VVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFC--KTMLLQPVMNEFAG 174
V + ANHCPG+V F+ +NG + +HTGDFR+ ++ L++ +++ ++G
Sbjct: 102 VAFIDANHCPGSVIIYFEF--KNG--TKIIHTGDFRYSNIQSFLIKKLLS-YSG 150
Score = 55 (24.4 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 43/183 (23%), Positives = 72/183 (39%)
Query: 503 EYKLPTIKHSIKSTLSPSKRKKTVTNNPKKKGKVPSKMESSGAKQPTITSFFNKLLPNMS 562
E K T+K IK + S NN S SS + SF N N+
Sbjct: 526 EEKKETVK--IKMEKNDSNNNNNNNNNNNNNNNNNSSSSSSSSSSNNSNSFINHKHENIK 583
Query: 563 QGDVVESKSEECPKDENPLQSNAIKTYGEEIDQFLKIINGNESLKGYAATLLEKTK---G 619
Q D ++K + + SN I + E++++ + NE KG + +KT G
Sbjct: 584 QNDC-DTKYII---NSDTKYSN-IHMH-EKVNKLDLLTYVNEDKKG--EQIKKKTLFLFG 635
Query: 620 NVSMALD-LYYDNQEGDRGKTVNRLEFSKSSVQSDSCNKDCSSALEKIVSEELQ---HIT 675
++ + +Y + K + E + ++S NK L KI +L+ HI
Sbjct: 636 TYNLGKEKIYLSLSDACNMKIYYKNEKKRKIIESFLYNKHI---LNKITDNKLEAQIHIV 692
Query: 676 DMS 678
D++
Sbjct: 693 DIN 695
Score = 38 (18.4 bits), Expect = 9.4e-11, Sum P(2) = 9.4e-11
Identities = 11/50 (22%), Positives = 22/50 (44%)
Query: 613 LLEKTKGNVSMALDLYYDNQEGDRGKTVNRLEFSKSSVQSDSCNKDCSSA 662
+LE+ K V + ++ N + N + SS S S + + S++
Sbjct: 524 ILEEKKETVKIKMEKNDSNNNNNNNNNNNNNNNNNSSSSSSSSSSNNSNS 573
>UNIPROTKB|Q8TMT1 [details] [associations]
symbol:lig2 "DNA ligase 2" species:188937 "Methanosarcina
acetivorans C2A" [GO:0003910 "DNA ligase (ATP) activity"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0006266
"DNA ligation" evidence=IBA] [GO:0006273 "lagging strand
elongation" evidence=IBA] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] HAMAP:MF_00407 InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
InterPro:IPR022865 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524
GO:GO:0005694 GO:GO:0051301 GO:GO:0046872 GO:GO:0003677
GO:GO:0007049 GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0006289 GO:GO:0006273 eggNOG:COG1793
KO:K10747 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 EMBL:AE010299
GenomeReviews:AE010299_GR RefSeq:NP_617472.1
ProteinModelPortal:Q8TMT1 GeneID:1474460 KEGG:mac:MA2571
OMA:ARVQVHK ProtClustDB:CLSK568925
BioCyc:MACE188937:GI2O-2632-MONOMER Uniprot:Q8TMT1
Length = 568
Score = 274 (101.5 bits), Expect = 2.1e-27, Sum P(2) = 2.1e-27
Identities = 77/220 (35%), Positives = 123/220 (55%)
Query: 957 PIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRF 1016
PIK ML++I+ + ++ + A E+K+DG R QIHK +V +FSR + T+
Sbjct: 229 PIKMMLSQISPDIDADIRDMKGAAI--EWKFDGARVQIHKN-GNSVTLFSRKLENVTNSL 285
Query: 1017 PDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKV 1076
PDL+ II + K A + ILD E VA+D +NG K +FQE+ R R D + K++ +
Sbjct: 286 PDLVEIIRKHVK--AESAILDGEAVAVD-ENG-KPRAFQEILKRFRRKYD--VEEKALGI 339
Query: 1077 DICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDV 1136
I + +FDIM+ NG L+ L +RRK L+ + +K ++V D+ +T D+
Sbjct: 340 PIQLNLFDIMYLNGRTLIDLPLVERRKALESCVESS----VEDSKSISV--DEQVITGDL 393
Query: 1137 SLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
L + EAL++ EG++VK+ ++ YSP KR +W
Sbjct: 394 EL--VEKIYREALNAGHEGVMVKN--PNSAYSPGKRGKNW 429
Score = 117 (46.2 bits), Expect = 2.1e-27, Sum P(2) = 2.1e-27
Identities = 52/202 (25%), Positives = 84/202 (41%)
Query: 731 KIKAMSMLCNMFRSLLALSPDDVLP-AVYLCTNKIASNHENIELNIGGSLVTSAIEEACG 789
KI + N LL + LP A + +++ +L IG SL+ S++ +A G
Sbjct: 16 KISSTIETTNKVADLLKKVDVEELPLATHFIMSEVFPAWSGEQLGIGTSLLYSSLSKASG 75
Query: 790 TNRSKIRDMYNRLGDLGDVA----QECRQTQXXXXXXXXX----XIKDVYSMLCKISVQT 841
+ I + GD+G+ A +E R+ Q I +VY S +
Sbjct: 76 MSVRSIESLIRTTGDIGETALLILKEKRKNQVTFSSFLEEQPELSITEVYQRFKTASEAS 135
Query: 842 GSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQAVVMNSSLEF 901
G GS K + L S +E K++ R + LRIG + A+A+A + S +
Sbjct: 136 GKGSQELKIKNLQFLFNSSTPREAKYISRLALEELRIGVGEGVVRDAIARAFSVPSD-KV 194
Query: 902 SHEGKMENLKEKLQSLSAAAVE 923
H + N L ++AAA E
Sbjct: 195 EHAFMVTN---DLGIVAAAAKE 213
>ASPGD|ASPL0000068746 [details] [associations]
symbol:AN10962 species:162425 "Emericella nidulans"
[GO:0006281 "DNA repair" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
EMBL:BN001304 InterPro:IPR011084 Pfam:PF07522
EnsemblFungi:CADANIAT00000700 HOGENOM:HOG000166938 OMA:FCCALRI
Uniprot:C8VBT0
Length = 832
Score = 252 (93.8 bits), Expect = 2.9e-27, Sum P(3) = 2.9e-27
Identities = 52/115 (45%), Positives = 71/115 (61%)
Query: 51 IDAFRYAADFSVS-YFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLLSQILNINPKFIYP 109
+DAFRY A S + YFLSHFHSDHY GLS SW G I+CS T+ L+ Q L ++PK++
Sbjct: 406 VDAFRYGAVESCNAYFLSHFHSDHYIGLSKSWRHGPIYCSRATANLVRQQLKVDPKWVVD 465
Query: 110 LPIKIPVLIDGC---EVVLVGANHCPGAVQFLFKVPGRNGG---FERYVHTGDFR 158
L + + G +V ++ ANHCPG+ FLF+ +G +R +H GDFR
Sbjct: 466 LDFEKKTEVPGTGGVQVTMIEANHCPGSAIFLFEKAVSSGASTRIQRVLHCGDFR 520
Score = 138 (53.6 bits), Expect = 5.7e-15, Sum P(3) = 5.7e-15
Identities = 35/89 (39%), Positives = 50/89 (56%)
Query: 120 GCEVVLVGANHCPGAVQFLFKVPGRNGG---FERYVHTGDFR----FCKTMLLQP-VMNE 171
G +V ++ ANHCPG+ FLF+ +G +R +H GDFR + LL+P V++
Sbjct: 479 GVQVTMIEANHCPGSAIFLFEKAVSSGASTRIQRVLHCGDFRASPQHVQHALLRPDVVDP 538
Query: 172 FAG------CDAVFLDTTYCNPKFLFPLQ 194
G DA +LDTTY +PK+ FP Q
Sbjct: 539 KTGKRWQQRIDACYLDTTYLSPKYAFPRQ 567
Score = 115 (45.5 bits), Expect = 2.9e-27, Sum P(3) = 2.9e-27
Identities = 38/121 (31%), Positives = 55/121 (45%)
Query: 219 RVLFLVATYVIGKEKILIEIFKKCGRKVCVDSRKMEVLRVLGYGD-SGVFTEDESETDVH 277
R+L ++ TY IGKE+I + I + K+ K V L + S + T+D + VH
Sbjct: 629 RLLVVIGTYSIGKERICLAIARALKSKIYATPAKQRVCACLEDPELSALLTDDPLQAQVH 688
Query: 278 VVGWNEIMVERGYD----------KVVGFVPTGWTYEVKRNKFAVRSKDAFEIHLVPYSE 327
+ EI E D +V+GF PTGWTY A R+ + + V YS
Sbjct: 689 MQTLFEIRAETLCDYLDSMKPHFTRVIGFRPTGWTYRPP----AGRTLENPPVSTVLYSS 744
Query: 328 H 328
H
Sbjct: 745 H 745
Score = 78 (32.5 bits), Expect = 2.9e-27, Sum P(3) = 2.9e-27
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 323 VPYSEHSNYDELREYVKFLKPKRVIPTVGMDIEK 356
VPYSEHS++ EL + L+ R+IPTV + +K
Sbjct: 770 VPYSEHSSFRELTMFCCALRIGRIIPTVNVGSQK 803
>UNIPROTKB|E2RLH4 [details] [associations]
symbol:DCLRE1B "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001279 SMART:SM00849 GO:GO:0016787
InterPro:IPR011084 Pfam:PF07522 OMA:KYLLTPV
GeneTree:ENSGT00530000063183 EMBL:AAEX03010988 EMBL:AAEX03010989
Ensembl:ENSCAFT00000014735 Uniprot:E2RLH4
Length = 463
Score = 322 (118.4 bits), Expect = 3.0e-26, P = 3.0e-26
Identities = 94/309 (30%), Positives = 158/309 (51%)
Query: 44 VPNTRFLID--AFRYAADFSVSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLLSQILN 101
+P+T +D + R A + +FLSH HSDH GLS +W++ + +CS IT+ L+ + L
Sbjct: 6 IPHTPIAVDFWSLRRAGSARL-FFLSHMHSDHTVGLSSTWARPL-YCSPITAHLVHRQLQ 63
Query: 102 INPKFIYPLPI-KIPVL-ID--GCE---VVLVGANHCPGAVQFLFKVPGRNGGFERYVHT 154
++ ++I L + + VL +D G E V L+ ANHCPG+V FLF+ G F ++T
Sbjct: 64 VSKRWIRALEVGESHVLPLDEIGRETMTVTLMDANHCPGSVMFLFE-----GYFGTILYT 118
Query: 155 GDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQXXXXXXXXXXXXXXXXXXXX 214
GDFR+ +ML +P + ++LD T CNP + P +
Sbjct: 119 GDFRYTPSMLKEPALKLGKQIHTLYLDNTNCNPARVLPSRQEAARQIVELIRKHP----- 173
Query: 215 XLQKRVLFLVATYVIGKEKILIEIFKKCGRKVCVDSRKMEVLRVLGYGDSGVFTEDESET 274
Q + + Y +GKE +L ++ + V + +++E++++LG + VFT +E
Sbjct: 174 --QHNIK--IGLYSLGKESLLEQLALEFRTWVVLSPQRLELVQLLGLAN--VFTVEEKAG 227
Query: 275 DVHVVGWNEIMVERGYDKVVGFVPTGWTYEVKRNKFAVRSKDAFEIHLVPYSEHSNYDEL 334
+H V EI R V+ + T T + + +IH++PYS+HS++ EL
Sbjct: 228 RIHAVDHMEIC--RA--AVLHWNQTHPTIAILPTSRKIHRSHP-DIHIIPYSDHSSFSEL 282
Query: 335 REYVKFLKP 343
+ +V LKP
Sbjct: 283 QTFVAALKP 291
>UNIPROTKB|O67398 [details] [associations]
symbol:lig "Probable DNA ligase" species:224324 "Aquifex
aeolicus VF5" [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0006266 "DNA ligation"
evidence=IBA] [GO:0006273 "lagging strand elongation" evidence=IBA]
[GO:0006289 "nucleotide-excision repair" evidence=IBA]
HAMAP:MF_00407 InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
InterPro:IPR022865 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524
GO:GO:0005694 GO:GO:0051301 GO:GO:0046872 GO:GO:0003677
GO:GO:0007049 GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0006289 GO:GO:0006273 eggNOG:COG1793
KO:K10747 OMA:AQVACLY GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574
EMBL:AE000657 PIR:D70421 RefSeq:NP_213963.1
ProteinModelPortal:O67398 SMR:O67398 GeneID:1192929
GenomeReviews:AE000657_GR KEGG:aae:aq_1394 PATRIC:20959956
HOGENOM:HOG000036008 ProtClustDB:PRK01109
BioCyc:AAEO224324:GJBH-1004-MONOMER Uniprot:O67398
Length = 584
Score = 197 (74.4 bits), Expect = 2.6e-25, Sum P(2) = 2.6e-25
Identities = 64/194 (32%), Positives = 95/194 (48%)
Query: 916 SLSAAAVE-AYNXXXXXXXXXXXXMNKGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLK 974
S++ VE AYN KG+ + + G P++PMLA+ + +L+
Sbjct: 181 SVNREVVERAYNLTSDLGYVAKILAEKGLE-GVKQVKIQVGRPVRPMLAERMSSPILILR 239
Query: 975 LFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAG-T 1033
K EYKYDG+R Q H+ D +FSR + T ++PDLI EF K A
Sbjct: 240 KLGGKC-GAEYKYDGERIQAHRKGD-EFYLFSRRLENITHQYPDLI----EFLKEAIPHD 293
Query: 1034 FILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSV-KVDICVFVFDIMFANGEQ 1092
FI++ E V ID +G +I FQEL R K +T + K + F+FDI++ +GE
Sbjct: 294 FIVELEAVVIDPASG-EIRPFQELMHR----KVKYVTKYHITKYPVAGFLFDIIYLDGED 348
Query: 1093 LLGYTLRQRRKYLK 1106
L +RR+ L+
Sbjct: 349 LTLKPYPERREILE 362
Score = 179 (68.1 bits), Expect = 2.6e-25, Sum P(2) = 2.6e-25
Identities = 50/184 (27%), Positives = 87/184 (47%)
Query: 715 YIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLP-AVYLCTNKIASNHENIEL 773
Y LA ++ +E +I+ +S L +F+ +P +++ VYL KIA + ++
Sbjct: 3 YRILAEFYERIEKTTSRIEMVSSLVELFKQ----TPKELIDKVVYLSIGKIAPEYTGLDY 58
Query: 774 NIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQXXXXXXXXXXIKDVYSM 833
N G L A+ +I + GDLG+ ++ + + +++VY+
Sbjct: 59 NFGEKLAIRALSRVLKIPALEIEKRVRQEGDLGEAGRKLYE-ELGFKPEGTLTVEEVYNG 117
Query: 834 LCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQAV 893
L I+ G GS RK S+ +L+ E K+L+RT+ LR+G TIL AL+ A
Sbjct: 118 LLNIAKAVGIGSQERKISIFASLLKKATPLEAKYLLRTITERLRLGIGDNTILEALSIAF 177
Query: 894 VMNS 897
+S
Sbjct: 178 TGSS 181
Score = 127 (49.8 bits), Expect = 6.4e-18, Sum P(2) = 6.4e-18
Identities = 46/155 (29%), Positives = 75/155 (48%)
Query: 1025 EFCKPAAG-TFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSV-KVDICVFV 1082
EF K A FI++ E V ID +G +I FQEL R K +T + K + F+
Sbjct: 284 EFLKEAIPHDFIVELEAVVIDPASG-EIRPFQELMHR----KVKYVTKYHITKYPVAGFL 338
Query: 1083 FDIMFANGEQLLGYTLRQRRKYLKDLFY-DEKMGYFQYAKEMTVEGDDNCLTSDVSLSKI 1141
FDI++ +GE L +RR+ L+ + +++G +++ DN + +
Sbjct: 339 FDIIYLDGEDLTLKPYPERREILEKVVKRTDRIGLVP--RKIV----DN-------VEDL 385
Query: 1142 NNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
NF +A+ CEG++ KSL ++ Y KR W
Sbjct: 386 ENFFYQAIEEGCEGLVCKSLAPNSIYQAGKRGFLW 420
Score = 58 (25.5 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 24/74 (32%), Positives = 36/74 (48%)
Query: 740 NMFRSLLALSPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEA-CGT--NRSKIR 796
++F SLL + L A YL + + E + L IG + + A+ A G+ NR +
Sbjct: 135 SIFASLLKKATP--LEAKYL----LRTITERLRLGIGDNTILEALSIAFTGSSVNREVVE 188
Query: 797 DMYNRLGDLGDVAQ 810
YN DLG VA+
Sbjct: 189 RAYNLTSDLGYVAK 202
>UNIPROTKB|Q980T8 [details] [associations]
symbol:lig "DNA ligase" species:273057 "Sulfolobus
solfataricus P2" [GO:0003910 "DNA ligase (ATP) activity"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0006266
"DNA ligation" evidence=IBA] [GO:0006273 "lagging strand
elongation" evidence=IBA] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] HAMAP:MF_00407 InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
InterPro:IPR022865 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524
GO:GO:0005694 GO:GO:0051301 GO:GO:0046872 GO:GO:0003677
GO:GO:0007049 GO:GO:0006310 EMBL:AE006641 GenomeReviews:AE006641_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006289
GO:GO:0006273 eggNOG:COG1793 KO:K10747 OMA:AQVACLY GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 HOGENOM:HOG000036008 ProtClustDB:PRK01109
PIR:H90159 RefSeq:NP_341745.1 PDB:2HIV PDB:2HIX PDBsum:2HIV
PDBsum:2HIX ProteinModelPortal:Q980T8 SMR:Q980T8 PRIDE:Q980T8
GeneID:1455345 KEGG:sso:SSO0189 EvolutionaryTrace:Q980T8
Uniprot:Q980T8
Length = 601
Score = 319 (117.4 bits), Expect = 4.7e-24, Sum P(2) = 4.7e-24
Identities = 112/397 (28%), Positives = 182/397 (45%)
Query: 718 LARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLP-AVYLCTNKIASNHENI-ELNI 775
+A FD +E KI + L + LL+ S ++ VY+ K+ + EL I
Sbjct: 6 IAEYFDKLE----KISSRLQLTALLADLLSKSDKTIIDKVVYIIQGKLWPDFLGYPELGI 61
Query: 776 GGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQXXXXXXXXXXIKDVYSMLC 835
G + AI A T+ + + ++Y +GDLG+VA+ + Q S+
Sbjct: 62 GEKFLIKAISIATNTDENSVENLYKTIGDLGEVARRLKSKQQSTGILGFLGTTSKESLTV 121
Query: 836 KISVQTGSG---STAR-KKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQ 891
T S +T + L + L+ +K + LVR + +R +
Sbjct: 122 DEVYSTLSKVALTTGEGSRDLKIRLLAGLLKKADPLEAKFLVRFVE--GRLRV---GIGD 176
Query: 892 AVVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNXXXXXXXXXXXXMNKGIGFSASTLS 951
A V+++ + + G QS S AYN + KGI + TL
Sbjct: 177 ATVLDA-MAIAFGGG--------QSASEIIERAYNLRADLGNIAKIIVEKGIE-ALKTLK 226
Query: 952 MVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDE 1011
G+PI+PMLA+ + ++LK A +YKYDG+RAQIHK D + IFSR +
Sbjct: 227 PQVGIPIRPMLAERLSNPEEILKKMGGNAIV-DYKYDGERAQIHKKED-KIFIFSRRLEN 284
Query: 1012 TTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITI 1071
TS++PD++ ++++ + FI++ E+VAID ++G ++ FQEL R+R D I
Sbjct: 285 ITSQYPDVVDYVSKYIE--GKEFIIEGEIVAIDPESG-EMRPFQELMHRKRKS-DIYEAI 340
Query: 1072 KSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDL 1108
K V+ VF+FD+M+ L RRK L+ +
Sbjct: 341 KEYPVN--VFLFDLMYYEDVDYTTKPLEARRKLLESI 375
Score = 38 (18.4 bits), Expect = 4.7e-24, Sum P(2) = 4.7e-24
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 474 ILDLISSSGRNIVDAV 489
+ DL+S S + I+D V
Sbjct: 26 LADLLSKSDKTIIDKV 41
>SGD|S000004745 [details] [associations]
symbol:PSO2 "Nuclease required for DNA single- and
double-strand break repair" species:4932 "Saccharomyces cerevisiae"
[GO:0006302 "double-strand break repair" evidence=TAS] [GO:0090305
"nucleic acid phosphodiester bond hydrolysis" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;IC;IDA] [GO:0003684 "damaged DNA
binding" evidence=IMP] [GO:0008409 "5'-3' exonuclease activity"
evidence=IMP;IDA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA;IMP] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0036297 "interstrand cross-link repair" evidence=IGI;IMP]
SGD:S000004745 GO:GO:0005634 GO:GO:0046872 GO:GO:0003684
EMBL:BK006946 GO:GO:0006302 eggNOG:COG1236 GO:GO:0036297
EMBL:Z47071 GO:GO:0008409 KO:K15340 InterPro:IPR011084 Pfam:PF07522
GeneTree:ENSGT00530000063183 OMA:SEHSSFK OrthoDB:EOG4M68SB
EMBL:X64004 EMBL:X76917 PIR:S19646 RefSeq:NP_013857.1
ProteinModelPortal:P30620 DIP:DIP-6301N IntAct:P30620
MINT:MINT-699963 STRING:P30620 PaxDb:P30620 EnsemblFungi:YMR137C
GeneID:855168 KEGG:sce:YMR137C CYGD:YMR137c HOGENOM:HOG000115743
NextBio:978602 Genevestigator:P30620 GermOnline:YMR137C
Uniprot:P30620
Length = 661
Score = 236 (88.1 bits), Expect = 3.8e-23, Sum P(3) = 3.8e-23
Identities = 64/161 (39%), Positives = 86/161 (53%)
Query: 50 LIDAFRYAADFSVS-YFLSHFHSDHYTGLSPSWS-------KGIIFCSEITSRLLSQILN 101
++D F Y A ++S YFLSHFHSDHY GL SW+ K ++CS+IT+ L++
Sbjct: 229 VVDGFNYKASETISQYFLSHFHSDHYIGLKKSWNNPDENPIKKTLYCSKITAILVNLKFK 288
Query: 102 INPKFIYPLPIKIPVLI-DGCEVVLVGANHCPGAVQFLFKVPGRNG---GFERYVHTGDF 157
I I LP+ I D VV + ANHCPGA+ LF+ N + +HTGDF
Sbjct: 289 IPMDEIQILPMNKRFWITDTISVVTLDANHCPGAIIMLFQEFLANSYDKPIRQILHTGDF 348
Query: 158 RFCKTML--LQPVMNEFAG--CDAVFLDTTYCNPKFLFPLQ 194
R M+ +Q + E A D V+LDTTY + FP Q
Sbjct: 349 RSNAKMIETIQKWLAETANETIDQVYLDTTYMTMGYNFPSQ 389
Score = 83 (34.3 bits), Expect = 3.8e-23, Sum P(3) = 3.8e-23
Identities = 30/87 (34%), Positives = 46/87 (52%)
Query: 269 EDESETDVHVVGWNEIMV-ERGYDKVVGFVPTGWTYEVKR-NKFAVRSKDAFEIHLVPYS 326
+DE+E + E+M +R D GF + + K+ NKF V F VPYS
Sbjct: 558 DDENEMSGNTEYCLELMKNDRDNDDENGFEISSILRQYKKYNKFQV-----FN---VPYS 609
Query: 327 EHSNYDELREYVKFLKPKRVIPTVGMD 353
EHS++++L ++ LK VIPTV ++
Sbjct: 610 EHSSFNDLVKFGCKLKCSEVIPTVNLN 636
Score = 82 (33.9 bits), Expect = 3.8e-23, Sum P(3) = 3.8e-23
Identities = 29/71 (40%), Positives = 37/71 (52%)
Query: 219 RVLFLVATYVIGKEKILIEI--FKKCGRKVCVDSRKMEV-LRVLGYG-------DSGVFT 268
RVLFLV TY IGKEK+ I+I F K V +S K + L VL D + T
Sbjct: 434 RVLFLVGTYTIGKEKLAIKICEFLKTKLFVMPNSVKFSMMLTVLQNNENQNDMWDESLLT 493
Query: 269 EDESETDVHVV 279
+ E+ VH+V
Sbjct: 494 SNLHESSVHLV 504
Score = 56 (24.8 bits), Expect = 2.3e-20, Sum P(3) = 2.3e-20
Identities = 8/13 (61%), Positives = 12/13 (92%)
Query: 291 DKVVGFVPTGWTY 303
+ VVGF+PTGW++
Sbjct: 534 EDVVGFIPTGWSH 546
Score = 48 (22.0 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 730 GKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEA 787
GK K +C ++ L + P+ V ++ L + N+EN SL+TS + E+
Sbjct: 445 GKEKLAIKICEFLKTKLFVMPNSVKFSMMLT---VLQNNENQNDMWDESLLTSNLHES 499
Score = 41 (19.5 bits), Expect = 7.9e-19, Sum P(3) = 7.9e-19
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 320 IHLVPYSEHSNYDELREYVKFLK 342
+HLVP + + + Y+K LK
Sbjct: 501 VHLVPIRVLKSQETIEAYLKSLK 523
>UNIPROTKB|Q9H816 [details] [associations]
symbol:DCLRE1B "5' exonuclease Apollo" species:9606 "Homo
sapiens" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005813 "centrosome" evidence=IDA] [GO:0000075 "cell cycle
checkpoint" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000723 "telomere maintenance" evidence=IMP]
[GO:0000781 "chromosome, telomeric region" evidence=IDA]
[GO:0008409 "5'-3' exonuclease activity" evidence=IDA] [GO:0031848
"protection from non-homologous end joining at telomere"
evidence=IMP] [GO:0031860 "telomeric 3' overhang formation"
evidence=ISS] [GO:0031627 "telomeric loop formation" evidence=ISS]
InterPro:IPR001279 SMART:SM00849 GO:GO:0005634 GO:GO:0005737
GO:GO:0005813 GO:GO:0006281 GO:GO:0031848 EMBL:AL137856
GO:GO:0000781 GO:GO:0000075 eggNOG:COG1236 GO:GO:0008409
InterPro:IPR011084 Pfam:PF07522 HOGENOM:HOG000043118 OMA:KYLLTPV
GO:GO:0031860 GO:GO:0031627 CTD:64858 KO:K15341 OrthoDB:EOG43R3N5
EMBL:AK022872 EMBL:AK024060 EMBL:AY849379 EMBL:BC029687
IPI:IPI00010223 RefSeq:NP_073747.1 UniGene:Hs.591412 PDB:3BUA
PDB:3ZDK PDBsum:3BUA PDBsum:3ZDK ProteinModelPortal:Q9H816
SMR:Q9H816 DIP:DIP-42669N IntAct:Q9H816 MINT:MINT-3372972
STRING:Q9H816 PhosphoSite:Q9H816 DMDM:73620756 PaxDb:Q9H816
PRIDE:Q9H816 DNASU:64858 Ensembl:ENST00000369563 GeneID:64858
KEGG:hsa:64858 UCSC:uc001eeg.3 GeneCards:GC01P114447
HGNC:HGNC:17641 MIM:300240 MIM:609683 neXtProt:NX_Q9H816
PharmGKB:PA27175 HOVERGEN:HBG081420 InParanoid:Q9H816
PhylomeDB:Q9H816 EvolutionaryTrace:Q9H816 GenomeRNAi:64858
NextBio:67007 Bgee:Q9H816 CleanEx:HS_DCLRE1B Genevestigator:Q9H816
GermOnline:ENSG00000118655 Uniprot:Q9H816
Length = 532
Score = 297 (109.6 bits), Expect = 3.7e-22, Sum P(2) = 3.7e-22
Identities = 88/314 (28%), Positives = 150/314 (47%)
Query: 44 VPNTRFLID--AFRYAADFSVSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLLSQILN 101
+P+T +D + R A + +FLSH HSDH GLS +W++ + +CS IT+ LL + L
Sbjct: 6 IPHTPIAVDFWSLRRAGTARL-FFLSHMHSDHTVGLSSTWARPL-YCSPITAHLLHRHLQ 63
Query: 102 INPKFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGR-----NGGFERYVHTGD 156
++ ++I L + ++ E+ G + PG G F ++TGD
Sbjct: 64 VSKQWIQALEVGESHVLPLDEI---GQETMTVTLLDANHCPGSVMFLFEGYFGTILYTGD 120
Query: 157 FRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQXXXXXXXXXXXXXXXXXXXXXL 216
FR+ +ML +P + ++LD T CNP + P +
Sbjct: 121 FRYTPSMLKEPALTLGKQIHTLYLDNTNCNPALVLPSRQEAAHQIVQLIRKHP------- 173
Query: 217 QKRVLFLVATYVIGKEKILIEIFKKCGRKVCVDSRKMEVLRVLGYGDSGVFTEDESETDV 276
Q + + Y +GKE +L ++ + V + R++E++++LG D VFT +E +
Sbjct: 174 QHNIK--IGLYSLGKESLLEQLALEFQTWVVLSPRRLELVQLLGLAD--VFTVEEKAGRI 229
Query: 277 HVVGWNEIMVERGYDKVVGFVPTGWTYEVKRNKFAVRSKDAFEIHLVPYSEHSNYDELRE 336
H V EI + ++ + T T + + S +IH++PYS+HS+Y ELR
Sbjct: 230 HAVDHMEIC----HSNMLRWNQTHPTIAILPTSRKIHSSHP-DIHVIPYSDHSSYSELRA 284
Query: 337 YVKFLKPKRVIPTV 350
+V LKP +V+P V
Sbjct: 285 FVAALKPCQVVPIV 298
Score = 40 (19.1 bits), Expect = 3.7e-22, Sum P(2) = 3.7e-22
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 542 SSGAKQPTITSFFNKLLPN-MSQGDVVESKSEECPKDENPLQSNAIK 587
SS +++P++ + L +QG V ES E + + S K
Sbjct: 328 SSSSRKPSLLWLLERRLKRPRTQGVVFESPEESADQSQADRDSKKAK 374
>TAIR|locus:2015939 [details] [associations]
symbol:AT1G27410 "AT1G27410" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC004557
eggNOG:COG1236 InterPro:IPR011084 Pfam:PF07522 KO:K15341
EMBL:AY065116 EMBL:AY081629 IPI:IPI00538938 PIR:E86399
RefSeq:NP_174061.1 UniGene:At.28586 ProteinModelPortal:Q9FZJ4
SMR:Q9FZJ4 PRIDE:Q9FZJ4 EnsemblPlants:AT1G27410.1 GeneID:839631
KEGG:ath:AT1G27410 TAIR:At1g27410 HOGENOM:HOG000082912
InParanoid:Q9FZJ4 OMA:MAIDAHH PhylomeDB:Q9FZJ4
ProtClustDB:CLSN2682886 Genevestigator:Q9FZJ4 Uniprot:Q9FZJ4
Length = 422
Score = 256 (95.2 bits), Expect = 3.8e-22, Sum P(2) = 3.8e-22
Identities = 80/272 (29%), Positives = 130/272 (47%)
Query: 61 SVSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLLSQ--------ILNINPKFIYP-LP 111
S +YFL+H HSDH GLS WS+G ++CS T+ L +L + P F + L
Sbjct: 15 SQAYFLTHIHSDHTRGLSGGWSQGPLYCSRTTASLFPSRFPGFDLSLLRVVPLFSWTSLS 74
Query: 112 IKIPVLIDGCEVVL----VGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRF-------C 160
++ P G V L + A+HCPG++ FLF+ G F +++TGDFR+
Sbjct: 75 LRSPS--SGSTVRLHLMAIDAHHCPGSIMFLFR-----GDFGCFLYTGDFRWDSDASDEA 127
Query: 161 KTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQXXXXXXXXXXXXXXXXXXXXXLQKRV 220
+T L+ + +EF D ++LD TYCNP + FP +
Sbjct: 128 RTTLVAAI-DEFP-VDILYLDNTYCNPIYSFPSRLVAVQLVADIIASHPSHD-------- 177
Query: 221 LFLVATYVIGKEKILIEIFKKCGRKVCVDSRKMEVLRVLGYGDSGVFTEDESETDVHVVG 280
++A +GKE +L+ + + K+ V ++ + +LG+ D +FT D S T V V
Sbjct: 178 -IIIAVDSLGKEDLLVHVSRILNIKIWVWPERLRTMHLLGFQD--IFTTDTSLTRVRAVP 234
Query: 281 WNEIMVE--RGYDKV---VGFVPTGWTYEVKR 307
++ G + + +G +P+G + VKR
Sbjct: 235 RYSFSIQTLEGLNTMCPTIGIMPSGLPW-VKR 265
Score = 77 (32.2 bits), Expect = 3.8e-22, Sum P(2) = 3.8e-22
Identities = 20/62 (32%), Positives = 32/62 (51%)
Query: 288 RGYDKVVG-FVPTGWTYEVKRNKFAVRSKDAFEIH----LVPYSEHSNYDELREYVKFLK 342
+G DK+ G F+ E K + + + H V YS+HS Y+E+ E++K +K
Sbjct: 268 KGDDKLSGSFLTASMKNETVSAKKELEAAAVHKFHDYMYSVHYSDHSCYEEIGEFIKLVK 327
Query: 343 PK 344
PK
Sbjct: 328 PK 329
>UNIPROTKB|Q5QJC3 [details] [associations]
symbol:DCLRE1B "5' exonuclease Apollo" species:9031 "Gallus
gallus" [GO:0006281 "DNA repair" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005813 "centrosome" evidence=ISS]
[GO:0000781 "chromosome, telomeric region" evidence=ISS]
[GO:0008409 "5'-3' exonuclease activity" evidence=ISS] [GO:0031848
"protection from non-homologous end joining at telomere"
evidence=ISS] [GO:0000723 "telomere maintenance" evidence=ISS]
[GO:0000075 "cell cycle checkpoint" evidence=ISS] [GO:0031860
"telomeric 3' overhang formation" evidence=ISS] [GO:0031627
"telomeric loop formation" evidence=ISS] InterPro:IPR001279
SMART:SM00849 GO:GO:0005634 GO:GO:0005813 GO:GO:0006281
GO:GO:0031848 GO:GO:0000781 GO:GO:0000075 eggNOG:COG1236
GO:GO:0008409 InterPro:IPR011084 Pfam:PF07522 HOGENOM:HOG000043118
GO:GO:0031860 GO:GO:0031627 EMBL:AY376897 IPI:IPI00585177
RefSeq:NP_001026671.2 UniGene:Gga.12786 ProteinModelPortal:Q5QJC3
STRING:Q5QJC3 GeneID:428269 KEGG:gga:428269 CTD:64858
HOVERGEN:HBG081419 InParanoid:Q5QJC3 KO:K15341 OrthoDB:EOG43R3N5
NextBio:20829309 Uniprot:Q5QJC3
Length = 457
Score = 286 (105.7 bits), Expect = 5.5e-22, P = 5.5e-22
Identities = 77/263 (29%), Positives = 127/263 (48%)
Query: 44 VPNTRFLID--AFRYAADFSVSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLLSQILN 101
+P T +D + R A + +FLSH HSDH GLS +WS+ + +CS +T+RLL L
Sbjct: 6 IPGTPIAVDFWSVRRAGGARL-FFLSHMHSDHTVGLSSTWSRPL-YCSPLTARLLHHRLK 63
Query: 102 INPKFIYPLPI-KIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFC 160
+ ++I PL + + + + V L+ ANHCPG+V FLF+ G F ++TGDFR+
Sbjct: 64 VPTRWIRPLEVGQSHAVGEEVTVTLLDANHCPGSVMFLFE-----GAFGTILYTGDFRYS 118
Query: 161 KTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQXXXXXXXXXXXXXXXXXXXXXLQKRV 220
M +P ++ D ++LD T C P P + Q RV
Sbjct: 119 PAMQREPALSG-RRIDRLYLDNTNCRPHGALPSRSRAALQAAQLIRRHP-------QHRV 170
Query: 221 LFLVATYVIGKEKILIEIFKKCGRKVCVDSRKMEVLRVLGYGDSGVFTEDESE---TDVH 277
+ + Y +GKE++L+++ + G V V ++E +R+L + E DV
Sbjct: 171 V--IGVYSLGKEELLVDLALEFGTWVVVSPSRLEQMRLLELPEVFTTEEGAGRIHAVDVA 228
Query: 278 VVGWNEIMVERGYDKVVGFVPTG 300
+ W+ ++ + +PTG
Sbjct: 229 EIRWDTLVSWNVLHPTIAILPTG 251
Score = 178 (67.7 bits), Expect = 5.7e-10, P = 5.7e-10
Identities = 53/184 (28%), Positives = 86/184 (46%)
Query: 176 DAVFLDTTYCNPKFLFPLQXXXXXXXXXXXXXXXXXXXXXLQKRVLFLVATYVIGKEKIL 235
D ++LD T C P P + Q RV+ + Y +GKE++L
Sbjct: 133 DRLYLDNTNCRPHGALPSRSRAALQAAQLIRRHP-------QHRVV--IGVYSLGKEELL 183
Query: 236 IEIFKKCGRKVCVDSRKMEVLRVLGYGDSGVFTEDESETDVHVVG-----WNEIMVERGY 290
+++ + G V V ++E +R+L + VFT +E +H V W+ ++
Sbjct: 184 VDLALEFGTWVVVSPSRLEQMRLLELPE--VFTTEEGAGRIHAVDVAEIRWDTLVSWNVL 241
Query: 291 DKVVGFVPTGWTYEVKRNKFAVRSKDAFEIHLVPYSEHSNYDELREYVKFLKPKRVIPTV 350
+ +PTG +V +IHL+PYS+HS++ EL E+VK+LKP VIP V
Sbjct: 242 HPTIAILPTGRPVKVTHP----------QIHLIPYSDHSSFSELCEFVKWLKPCSVIPIV 291
Query: 351 GMDI 354
D+
Sbjct: 292 KGDM 295
>UNIPROTKB|F1SBR3 [details] [associations]
symbol:DCLRE1B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0031860 "telomeric 3' overhang formation" evidence=IEA]
[GO:0031848 "protection from non-homologous end joining at
telomere" evidence=IEA] [GO:0031627 "telomeric loop formation"
evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0000781
"chromosome, telomeric region" evidence=IEA] [GO:0000075 "cell
cycle checkpoint" evidence=IEA] InterPro:IPR001279 SMART:SM00849
GO:GO:0005813 GO:GO:0031848 GO:GO:0000781 GO:GO:0000075
GO:GO:0008409 InterPro:IPR011084 Pfam:PF07522 OMA:KYLLTPV
GO:GO:0031860 GO:GO:0031627 KO:K15341 GeneTree:ENSGT00530000063183
EMBL:CU651648 RefSeq:XP_003125885.1 UniGene:Ssc.61003
Ensembl:ENSSSCT00000007407 GeneID:100516672 KEGG:ssc:100516672
Uniprot:F1SBR3
Length = 537
Score = 287 (106.1 bits), Expect = 9.2e-22, P = 9.2e-22
Identities = 91/314 (28%), Positives = 150/314 (47%)
Query: 44 VPNTRFLIDAFRYA-ADFSVSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLLSQILNI 102
+P+T +D + A + +FLSH HSDH GLS +W + + +CS IT+ LL + L +
Sbjct: 6 IPHTPIAVDFWSLRRAGCARLFFLSHMHSDHTVGLSSTWCRPV-YCSPITAYLLHRHLQV 64
Query: 103 NPKFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGR-----NGGFERYVHTGDF 157
+ ++I L + ++ EV G + PG G F ++TGDF
Sbjct: 65 SKQWIRALEVGESHILPLDEV---GRETMTVTLIDANHCPGSVMFLFEGYFGTILYTGDF 121
Query: 158 RFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQXXXXXXXXXXXXXXXXXXXXXLQ 217
RF +ML +P + ++LD T CNP + P Q Q
Sbjct: 122 RFTPSMLKEPALQLGKPIHTLYLDNTNCNPALVLPSQQEAARQIVELIRKHP-------Q 174
Query: 218 KRVLFLVATYVIGKEKILIEIFKKCGRKVCVDSRKMEVLRVLGYGDSGVFTEDESETDVH 277
+ + Y +GKE +L ++ + V + R++E++++LG D VFT +E +H
Sbjct: 175 HNIK--IGLYSLGKESLLEQLALEFQTWVVLSPRRLELVQLLGLAD--VFTVEEKAGRIH 230
Query: 278 VVGWNEIMVERGYDKVVGFVPTGWTYEV-KRNKFAVRSKDAFEIHLVPYSEHSNYDELRE 336
V EI R V+ + T T + ++ RS +IH++PYS+HS++ ELR
Sbjct: 231 AVDHMEIC--RS--AVLRWNQTHPTIAILPTSRRIYRSHP--DIHIIPYSDHSSFSELRA 284
Query: 337 YVKFLKPKRVIPTV 350
+V L+P +V+P V
Sbjct: 285 FVAALRPCQVVPIV 298
>UNIPROTKB|D2H8V8 [details] [associations]
symbol:DCLRE1B "5' exonuclease Apollo" species:9646
"Ailuropoda melanoleuca" [GO:0000075 "cell cycle checkpoint"
evidence=ISS] [GO:0000723 "telomere maintenance" evidence=ISS]
[GO:0000781 "chromosome, telomeric region" evidence=ISS]
[GO:0005813 "centrosome" evidence=ISS] [GO:0008409 "5'-3'
exonuclease activity" evidence=ISS] [GO:0031627 "telomeric loop
formation" evidence=ISS] [GO:0031848 "protection from
non-homologous end joining at telomere" evidence=ISS] [GO:0031860
"telomeric 3' overhang formation" evidence=ISS] InterPro:IPR001279
SMART:SM00849 GO:GO:0005634 GO:GO:0005737 GO:GO:0005813
GO:GO:0006281 GO:GO:0031848 GO:GO:0000781 GO:GO:0000075
GO:GO:0008409 InterPro:IPR011084 Pfam:PF07522 EMBL:GL192586
HOGENOM:HOG000043118 OMA:KYLLTPV GO:GO:0031860 GO:GO:0031627
Uniprot:D2H8V8
Length = 529
Score = 286 (105.7 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 86/314 (27%), Positives = 149/314 (47%)
Query: 44 VPNTRFLID--AFRYAADFSVSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLLSQILN 101
+P+T +D + R A + +FLSH HSDH GLS +W++ + +CS IT+ L+ + L
Sbjct: 6 IPHTPIAVDFWSLRRAGSARL-FFLSHMHSDHTVGLSSTWARPL-YCSPITAYLVHRHLQ 63
Query: 102 INPKFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGR-----NGGFERYVHTGD 156
+ ++I L + ++ E+ G + PG G F ++TGD
Sbjct: 64 VPKEWIRALEVGESHVLPLDEI---GRETMTVTLMDANHCPGSVMFLFEGYFGTILYTGD 120
Query: 157 FRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQXXXXXXXXXXXXXXXXXXXXXL 216
FR+ +ML +P + ++LD T CNP ++ P +
Sbjct: 121 FRYTPSMLKEPALKLGKQIHTLYLDNTNCNPAWVLPSRQEAARQIVELIRKHP------- 173
Query: 217 QKRVLFLVATYVIGKEKILIEIFKKCGRKVCVDSRKMEVLRVLGYGDSGVFTEDESETDV 276
Q + + Y +GKE +L ++ + V + R++E++++LG D VFT +E +
Sbjct: 174 QHNIK--IGLYSLGKESLLEQLALEFQTWVVLSPRRLELVQLLGLAD--VFTLEEKAGRI 229
Query: 277 HVVGWNEIMVERGYDKVVGFVPTGWTYEVKRNKFAVRSKDAFEIHLVPYSEHSNYDELRE 336
H V EI + ++ + T T + + +IH++PYS+HS+Y ELR
Sbjct: 230 HAVDHMEIC----HSAMLHWNQTHPTIAILPTSRKIHRSHP-DIHIIPYSDHSSYSELRT 284
Query: 337 YVKFLKPKRVIPTV 350
+V LKP +V+P V
Sbjct: 285 FVAALKPCQVVPIV 298
>UNIPROTKB|E1BFI5 [details] [associations]
symbol:DCLRE1B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0031860 "telomeric 3' overhang formation" evidence=IEA]
[GO:0031848 "protection from non-homologous end joining at
telomere" evidence=IEA] [GO:0031627 "telomeric loop formation"
evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0000781
"chromosome, telomeric region" evidence=IEA] [GO:0000075 "cell
cycle checkpoint" evidence=IEA] InterPro:IPR001279 SMART:SM00849
GO:GO:0005813 GO:GO:0031848 GO:GO:0000781 GO:GO:0000075
GO:GO:0008409 InterPro:IPR011084 Pfam:PF07522 OMA:KYLLTPV
GO:GO:0031860 GO:GO:0031627 GeneTree:ENSGT00530000063183
EMBL:DAAA02007479 IPI:IPI00700462 Ensembl:ENSBTAT00000004713
Uniprot:E1BFI5
Length = 541
Score = 283 (104.7 bits), Expect = 3.1e-21, Sum P(2) = 3.1e-21
Identities = 89/315 (28%), Positives = 150/315 (47%)
Query: 44 VPNTRFLID--AFRYAADFSVSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLLSQILN 101
+P+T +D + R A + +FL+H HSDH GL+ +W++ + +CS IT+ LL + L
Sbjct: 6 IPHTPIAVDFWSLRRAGSARL-FFLTHMHSDHTVGLTSTWTRPL-YCSPITAYLLHRHLQ 63
Query: 102 INPKFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGR-----NGGFERYVHTGD 156
++ ++I L + ++ EV G + PG G F ++TGD
Sbjct: 64 VSKQWIRALEVGESHVLPLDEV---GRETMTVTLLDANHCPGSVMFLFEGYFGTILYTGD 120
Query: 157 FRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQXXXXXXXXXXXXXXXXXXXXXL 216
FR+ +ML +P + ++LD T CNP + P Q
Sbjct: 121 FRYTPSMLKEPALRLGKQIHTLYLDNTNCNPDLVLPSQEEAARQIVELIRKHP------- 173
Query: 217 QKRVLFLVATYVIGKEKILIEIFKKCGRKVCVDSRKMEVLRVLGYGDSGVFTEDESETDV 276
Q + + Y +GKE +L + + V + R++E++++LG D VFT +E +
Sbjct: 174 QHNIK--IGLYSLGKESLLERLALEFQTWVVLSPRRLELVQLLGLAD--VFTVEEKAGRI 229
Query: 277 HVVGWNEIMVERGYDKVVGFVPTGWTYEV-KRNKFAVRSKDAFEIHLVPYSEHSNYDELR 335
H V EI + ++ + T T + ++ RS IH++PYS+HS+Y ELR
Sbjct: 230 HAVDHMEIC----HSAMLRWNQTHPTIAILPTSRKIYRSHP--NIHVIPYSDHSSYSELR 283
Query: 336 EYVKFLKPKRVIPTV 350
+V LKP +V+P V
Sbjct: 284 VFVAALKPCQVVPIV 298
Score = 47 (21.6 bits), Expect = 3.1e-21, Sum P(2) = 3.1e-21
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 1144 FLEEALHS-SCEGIIVKSLDVDAGYSPSKRSDS 1175
FLE L +G++ +SL+ DA +S + R DS
Sbjct: 341 FLERKLKRLRTQGVVFESLEEDADHSQADR-DS 372
>CGD|CAL0005993 [details] [associations]
symbol:orf19.2926 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0008409 "5'-3' exonuclease activity" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] InterPro:IPR001279
SMART:SM00849 CGD:CAL0005993 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0016787 eggNOG:COG1236 InterPro:IPR011084 Pfam:PF07522
RefSeq:XP_721154.1 RefSeq:XP_721426.1 ProteinModelPortal:Q5AIC7
GeneID:3636791 GeneID:3637070 KEGG:cal:CaO19.10443
KEGG:cal:CaO19.2926 Uniprot:Q5AIC7
Length = 830
Score = 132 (51.5 bits), Expect = 3.2e-21, Sum P(6) = 3.2e-21
Identities = 32/85 (37%), Positives = 42/85 (49%)
Query: 120 GCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFCKTMLLQPVMNEFA------ 173
G V + ANHCPGA F F+ G + R +H GDFR +L P++ F+
Sbjct: 380 GLYVTPITANHCPGAAIFFFESIGIDNKIYRILHCGDFRVNMEILNHPILRPFSLTHSKN 439
Query: 174 ----GCDAVFLDTTYCNPKFLFPLQ 194
D V+LDTTY +PK P Q
Sbjct: 440 NLLQSIDKVYLDTTYMSPKHNLPKQ 464
Score = 109 (43.4 bits), Expect = 3.2e-21, Sum P(6) = 3.2e-21
Identities = 31/97 (31%), Positives = 51/97 (52%)
Query: 6 SDKNLTLDSTHLFLSTQSSPPDSLIF---PPIPR----TFP----PSKHVPNT---RFLI 51
++ N +++T + S PP S+ PIP TFP PS ++ + +
Sbjct: 199 TNTNTNINTTFIDQSKIIKPPTSIKHVKKKPIPSLKIMTFPLTQEPSSSSSSSLIYQVAV 258
Query: 52 DAFRYAADFSVS-YFLSHFHSDHYTGLSPSWSKGIIF 87
DAF +A +++ YFL+HFH+DHY G+S W+ +F
Sbjct: 259 DAFCFAPHDTINQYFLTHFHADHYGGISKKWAYERVF 295
Score = 93 (37.8 bits), Expect = 3.2e-21, Sum P(6) = 3.2e-21
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 316 DAFEIHLVPYSEHSNYDELREYVKFLKPKRVIPTVGMDIE 355
D + ++ VPYSEHS++ EL ++ F + K+ IPTV + E
Sbjct: 737 DLYRLYSVPYSEHSSFRELAYFIIFFQIKQTIPTVNYENE 776
Score = 69 (29.3 bits), Expect = 3.2e-21, Sum P(6) = 3.2e-21
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 217 QKRVLFLVATYVIGKEKILIEIFKK 241
+K+ L ++ TY+IGKEK+ I I K+
Sbjct: 528 KKKFLIVIGTYIIGKEKLAISISKR 552
Score = 65 (27.9 bits), Expect = 3.2e-21, Sum P(6) = 3.2e-21
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 83 KGIIFCSEITSRLLSQILNINPKFIYPLPI 112
K II+C+ IT RLL+ +I+P+FI L +
Sbjct: 316 KKIIYCTGITGRLLTLRYSIDPRFIKHLEL 345
Score = 51 (23.0 bits), Expect = 3.2e-21, Sum P(6) = 3.2e-21
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 290 YDKVVGFVPTGWTY 303
+++ +G PTGW+Y
Sbjct: 631 FERCIGLCPTGWSY 644
Score = 47 (21.6 bits), Expect = 9.9e-16, Sum P(6) = 9.9e-16
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 320 IHLVPYSEHSNYDELREY 337
IHLVP + SN +EL +Y
Sbjct: 604 IHLVPMTLVSNNEELSKY 621
Score = 41 (19.5 bits), Expect = 4.0e-16, Sum P(6) = 4.0e-16
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 509 IKHSIKSTLSPSKRKKTVTNNPKKKGKVPSKME 541
I I +T S ++KT TN K K K +K +
Sbjct: 704 ILSQIPTTTPNSTKRKTKTNT-KTKTKTKTKTD 735
>UNIPROTKB|F1NF26 [details] [associations]
symbol:DCLRE1B "5' exonuclease Apollo" species:9031 "Gallus
gallus" [GO:0000075 "cell cycle checkpoint" evidence=IEA]
[GO:0000781 "chromosome, telomeric region" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] [GO:0008409 "5'-3'
exonuclease activity" evidence=IEA] [GO:0031627 "telomeric loop
formation" evidence=IEA] [GO:0031848 "protection from
non-homologous end joining at telomere" evidence=IEA] [GO:0031860
"telomeric 3' overhang formation" evidence=IEA] InterPro:IPR001279
SMART:SM00849 GO:GO:0005813 GO:GO:0031848 GO:GO:0000781
GO:GO:0000075 GO:GO:0008409 InterPro:IPR011084 Pfam:PF07522
GO:GO:0031860 GO:GO:0031627 IPI:IPI00585177
GeneTree:ENSGT00530000063183 OMA:MAIDAHH EMBL:AADN02045017
EMBL:AADN02045018 Ensembl:ENSGALT00000002953 Uniprot:F1NF26
Length = 459
Score = 274 (101.5 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 75/264 (28%), Positives = 127/264 (48%)
Query: 44 VPNTRFLID--AFRYAADFSVSYFLSHFHSDHYTGLSPSWSKGI-IFCSEITSRLLSQIL 100
+P T +D + R A + +FLSH HS+ GLS +WS+ + ++CS +T+RLL L
Sbjct: 6 IPGTPIAVDFWSVRRAGGARL-FFLSHMHSEKTVGLSSTWSRPLPLYCSPLTARLLYHRL 64
Query: 101 NINPKFIYPLPI-KIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRF 159
+ ++I PL + + + + V L+ ANHCPG+V FLF+ G F ++TGDFR+
Sbjct: 65 KVPTRWIRPLEVGQSHAVGEEVTVTLLDANHCPGSVMFLFE-----GAFGTILYTGDFRY 119
Query: 160 CKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQXXXXXXXXXXXXXXXXXXXXXLQKR 219
M +P ++ D ++LD T C P P + Q R
Sbjct: 120 SPAMQREPALSG-RRIDRLYLDNTNCRPHGALPSRSRAALQAAQLIRRHP-------QHR 171
Query: 220 VLFLVATYVIGKEKILIEIFKKCGRKVCVDSRKMEVLRVLGYGDSGVFTEDESE---TDV 276
V+ + Y +GKE++L+++ + G V V ++E +R+L + E DV
Sbjct: 172 VV--IGVYSLGKEELLVDLALEFGTWVVVSPSRLEQMRLLELPEVFTTEEGAGRIHAVDV 229
Query: 277 HVVGWNEIMVERGYDKVVGFVPTG 300
+ W+ ++ + +PTG
Sbjct: 230 AEIRWDTLVSWNVLHPTIAILPTG 253
Score = 178 (67.7 bits), Expect = 5.8e-10, P = 5.8e-10
Identities = 53/184 (28%), Positives = 86/184 (46%)
Query: 176 DAVFLDTTYCNPKFLFPLQXXXXXXXXXXXXXXXXXXXXXLQKRVLFLVATYVIGKEKIL 235
D ++LD T C P P + Q RV+ + Y +GKE++L
Sbjct: 135 DRLYLDNTNCRPHGALPSRSRAALQAAQLIRRHP-------QHRVV--IGVYSLGKEELL 185
Query: 236 IEIFKKCGRKVCVDSRKMEVLRVLGYGDSGVFTEDESETDVHVVG-----WNEIMVERGY 290
+++ + G V V ++E +R+L + VFT +E +H V W+ ++
Sbjct: 186 VDLALEFGTWVVVSPSRLEQMRLLELPE--VFTTEEGAGRIHAVDVAEIRWDTLVSWNVL 243
Query: 291 DKVVGFVPTGWTYEVKRNKFAVRSKDAFEIHLVPYSEHSNYDELREYVKFLKPKRVIPTV 350
+ +PTG +V +IHL+PYS+HS++ EL E+VK+LKP VIP V
Sbjct: 244 HPTIAILPTGRPVKVTHP----------QIHLIPYSDHSSFSELCEFVKWLKPCSVIPIV 293
Query: 351 GMDI 354
D+
Sbjct: 294 KGDM 297
>RGD|1310343 [details] [associations]
symbol:Dclre1b "DNA cross-link repair 1B" species:10116 "Rattus
norvegicus" [GO:0000075 "cell cycle checkpoint"
evidence=IEA;ISO;ISS] [GO:0000723 "telomere maintenance"
evidence=ISO;ISS] [GO:0000781 "chromosome, telomeric region"
evidence=IEA;ISO;ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005813
"centrosome" evidence=IEA;ISO;ISS] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0008409 "5'-3' exonuclease activity" evidence=IEA;ISO;ISS]
[GO:0031627 "telomeric loop formation" evidence=IEA;ISO;ISS]
[GO:0031848 "protection from non-homologous end joining at
telomere" evidence=IEA;ISO;ISS] [GO:0031860 "telomeric 3' overhang
formation" evidence=IEA;ISO;ISS] InterPro:IPR001279 SMART:SM00849
RGD:1310343 GO:GO:0005634 GO:GO:0005737 GO:GO:0005813 GO:GO:0006281
GO:GO:0031848 GO:GO:0000781 GO:GO:0000075 eggNOG:COG1236
GO:GO:0008409 InterPro:IPR011084 Pfam:PF07522 HOGENOM:HOG000043118
GO:GO:0031860 GO:GO:0031627 CTD:64858 HOVERGEN:HBG081419 KO:K15341
OrthoDB:EOG43R3N5 EMBL:BC098939 IPI:IPI00368893
RefSeq:NP_001020858.1 UniGene:Rn.39355 STRING:Q4KLY6 GeneID:310745
KEGG:rno:310745 UCSC:RGD:1310343 InParanoid:Q4KLY6 NextBio:662540
ArrayExpress:Q4KLY6 Genevestigator:Q4KLY6 Uniprot:Q4KLY6
Length = 541
Score = 274 (101.5 bits), Expect = 2.5e-20, Sum P(2) = 2.5e-20
Identities = 87/315 (27%), Positives = 149/315 (47%)
Query: 44 VPNTRFLID--AFRYAADFSVSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLLSQILN 101
+P T +D + R A + +FLSH H DH GLS +W++ + +CS IT+ LL + L
Sbjct: 6 IPQTPIAVDFWSLRRAGTARL-FFLSHMHCDHTVGLSSTWARPL-YCSPITAHLLHRRLQ 63
Query: 102 INPKFIYPLPI-KIPVLIDGCEVVLVGANHCPGAVQFLFKVPGR-----NGGFERYVHTG 155
++ ++I L I + VL+ + +G + PG G F ++TG
Sbjct: 64 VSKQWIRALEIGESHVLL----LDEIGQETMTVTLIDANHCPGSVMFLFEGYFGTILYTG 119
Query: 156 DFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQXXXXXXXXXXXXXXXXXXXXX 215
DFR+ +ML +P + ++LD T CNP + P +
Sbjct: 120 DFRYTPSMLKEPALTLGKQIHTLYLDNTNCNPALVLPSRQEATQQIIQLIRQFP------ 173
Query: 216 LQKRVLFLVATYVIGKEKILIEIFKKCGRKVCVDSRKMEVLRVLGYGDSGVFTEDESETD 275
Q + + Y +GKE +L ++ + V + +++E++++LG D VFT +E
Sbjct: 174 -QHNIK--IGLYSLGKESLLEQLALEFQTWVVLSPQRLELVQLLGLAD--VFTVEEEAGR 228
Query: 276 VHVVGWNEIMVERGYDKVVGFVPTGWTYEVKRNKFAVRSKDAFEIHLVPYSEHSNYDELR 335
+H V EI + ++ + T T + +RS I+ +PYS+HS+Y ELR
Sbjct: 229 IHAVDHMEIC----HSAMLQWNQTHPTIAIFPTSRKIRSPHP-SIYSIPYSDHSSYSELR 283
Query: 336 EYVKFLKPKRVIPTV 350
+V L+P +V+P V
Sbjct: 284 AFVAALRPCQVVPIV 298
Score = 48 (22.0 bits), Expect = 2.5e-20, Sum P(2) = 2.5e-20
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 506 LPTIKHSIKSTLSPSKRKKTVTNNPKKKGKVP 537
+P I HS++ +S S RK V +++ K P
Sbjct: 317 MPLIPHSVQQYMSSSSRKTNVFWQLERRLKRP 348
>MGI|MGI:2156057 [details] [associations]
symbol:Dclre1b "DNA cross-link repair 1B, PSO2 homolog (S.
cerevisiae)" species:10090 "Mus musculus" [GO:0000075 "cell cycle
checkpoint" evidence=ISO] [GO:0000723 "telomere maintenance"
evidence=ISO] [GO:0000781 "chromosome, telomeric region"
evidence=ISO;IDA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005813 "centrosome" evidence=ISO] [GO:0005856
"cytoskeleton" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006289 "nucleotide-excision repair" evidence=ISA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0008409 "5'-3'
exonuclease activity" evidence=ISO;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0031627 "telomeric loop formation"
evidence=IMP] [GO:0031848 "protection from non-homologous end
joining at telomere" evidence=ISO;IMP] [GO:0031860 "telomeric 3'
overhang formation" evidence=IMP] InterPro:IPR001279 SMART:SM00849
MGI:MGI:2156057 GO:GO:0005634 GO:GO:0005737 GO:GO:0005813
GO:GO:0031848 EMBL:CU210953 GO:GO:0000781 GO:GO:0000075
GO:GO:0006289 eggNOG:COG1236 GO:GO:0008409 InterPro:IPR011084
Pfam:PF07522 OMA:KYLLTPV GO:GO:0031860 GO:GO:0031627 CTD:64858
KO:K15341 OrthoDB:EOG43R3N5 GeneTree:ENSGT00530000063183
HOVERGEN:HBG081420 EMBL:AK046571 EMBL:AK049115 EMBL:AK084347
EMBL:AK134324 EMBL:AK137495 EMBL:AK138568 EMBL:AK154124
EMBL:BC011094 EMBL:BC067017 EMBL:BC125277 IPI:IPI00226917
IPI:IPI00403798 IPI:IPI00458408 RefSeq:NP_001020483.1
RefSeq:NP_598626.2 UniGene:Mm.374850 ProteinModelPortal:Q8C7W7
SMR:Q8C7W7 STRING:Q8C7W7 PRIDE:Q8C7W7 Ensembl:ENSMUST00000029435
Ensembl:ENSMUST00000063502 Ensembl:ENSMUST00000106832
Ensembl:ENSMUST00000106834 GeneID:140917 KEGG:mmu:140917
UCSC:uc008qtl.1 UCSC:uc008qtm.1 UCSC:uc008qto.1 InParanoid:B0V3P0
NextBio:370035 Bgee:Q8C7W7 Genevestigator:Q8C7W7
GermOnline:ENSMUSG00000027845 Uniprot:Q8C7W7
Length = 541
Score = 264 (98.0 bits), Expect = 2.7e-19, Sum P(2) = 2.7e-19
Identities = 85/314 (27%), Positives = 146/314 (46%)
Query: 44 VPNTRFLID--AFRYAADFSVSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLLSQILN 101
+P T +D + R A + +FL+H H DH GLS +W++ + +CS IT+ LL + L
Sbjct: 6 IPQTPIAVDFWSLRRAGSARL-FFLTHMHCDHTVGLSSTWARPL-YCSPITACLLHRRLQ 63
Query: 102 INPKFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGR-----NGGFERYVHTGD 156
++ +I L + ++ E+ G + PG G F ++TGD
Sbjct: 64 VSKHWIRALEVGESHVLPLDEI---GQETMTVTLIDANHCPGSVMFLFEGYFGTILYTGD 120
Query: 157 FRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQXXXXXXXXXXXXXXXXXXXXXL 216
FR+ +ML +P + ++LD T CNP + P +
Sbjct: 121 FRYTPSMLKEPALILGKQIHTLYLDNTNCNPALVLPSRQEATQQIVQLIRQFP------- 173
Query: 217 QKRVLFLVATYVIGKEKILIEIFKKCGRKVCVDSRKMEVLRVLGYGDSGVFTEDESETDV 276
Q + + Y +GKE +L ++ + V + +++E++++LG D VFT +E +
Sbjct: 174 QHNIK--IGLYSLGKESLLEQLALEFRTWVVLSPQRLELVQLLGLAD--VFTVEEEAGRI 229
Query: 277 HVVGWNEIMVERGYDKVVGFVPTGWTYEVKRNKFAVRSKDAFEIHLVPYSEHSNYDELRE 336
H V EI + ++ + + T + VRS I+ VPYS+HS+Y ELR
Sbjct: 230 HAVDHTEIC----HSAMLQWNQSHPTIAIFPTSRKVRSPHP-SIYTVPYSDHSSYSELRA 284
Query: 337 YVKFLKPKRVIPTV 350
+V L+P +V+P V
Sbjct: 285 FVAALRPCQVVPIV 298
Score = 49 (22.3 bits), Expect = 2.7e-19, Sum P(2) = 2.7e-19
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 506 LPTIKHSIKSTLSPSKRKKTVTNNPKKKGKVP 537
+P I HS++ +S S RK V +++ K P
Sbjct: 317 MPLIPHSVQQYMSSSSRKTNVLWQLERRLKRP 348
Score = 37 (18.1 bits), Expect = 4.7e-18, Sum P(2) = 4.7e-18
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 536 VPSKMESSGAKQPTITSFFNKLLPNMSQGDVVESKSEE 573
V M SS K + +L +QG V ES E+
Sbjct: 324 VQQYMSSSSRKTNVLWQLERRLKRPRTQGVVFESPEEK 361
>UNIPROTKB|Q0JKB6 [details] [associations]
symbol:Os01g0685500 "Os01g0685500 protein" species:39947
"Oryza sativa Japonica Group" [GO:0003910 "DNA ligase (ATP)
activity" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0006266 "DNA ligation"
evidence=IBA] [GO:0006273 "lagging strand elongation" evidence=IBA]
[GO:0006289 "nucleotide-excision repair" evidence=IBA]
InterPro:IPR012309 InterPro:IPR012310 Pfam:PF01068 Pfam:PF04679
PROSITE:PS50160 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
EMBL:AP008207 GO:GO:0006289 GO:GO:0006273 KO:K10747 GO:GO:0003910
RefSeq:NP_001043898.1 UniGene:Os.55232 ProteinModelPortal:Q0JKB6
GeneID:4324149 KEGG:osa:4324149 Gramene:Q0JKB6
ProtClustDB:CLSN2691710 Uniprot:Q0JKB6
Length = 318
Score = 236 (88.1 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 46/84 (54%), Positives = 62/84 (73%)
Query: 1093 LLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSS 1152
LL +LRQRRKY+ DLF EK G+F+ A+++TVE D+ + + +L ++N F + A SS
Sbjct: 65 LLNCSLRQRRKYIHDLF-QEKPGHFELAQQLTVEADEASVDNSTTLERMNTFFKMACQSS 123
Query: 1153 CEGIIVKSLDVDAGYSPSKRSDSW 1176
CEGI++K LDVDAGYS SKR DSW
Sbjct: 124 CEGIMLKILDVDAGYSASKRCDSW 147
>UNIPROTKB|Q24FD9 [details] [associations]
symbol:TTHERM_00865240 "DNA ligase" species:312017
"Tetrahymena thermophila SB210" [GO:0003910 "DNA ligase (ATP)
activity" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0005739 "mitochondrion"
evidence=IBA] [GO:0006266 "DNA ligation" evidence=IBA] [GO:0006273
"lagging strand elongation" evidence=IBA] [GO:0006289
"nucleotide-excision repair" evidence=IBA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006289
GO:GO:0006273 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 KO:K01971 EMBL:GG662285
RefSeq:XP_001026764.1 EnsemblProtists:EAS06519 GeneID:7839837
KEGG:tet:TTHERM_00865240 Uniprot:Q24FD9
Length = 635
Score = 212 (79.7 bits), Expect = 7.6e-18, Sum P(2) = 7.6e-18
Identities = 64/230 (27%), Positives = 113/230 (49%)
Query: 955 GVPIKPMLAKITNGVPQVLKL---FQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDE 1011
G P+ PMLAK + ++LK +++K + E KYDG+R Q+H +++FSRN +
Sbjct: 245 GTPVPPMLAKPVSDFDELLKFLKKYESKKVSLELKYDGERCQVHYGKKKGIKLFSRNLEI 304
Query: 1012 TTSRFPDLISIINEFCKP--AAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDS-- 1067
++P L+ + ++ + + ILD E+V D K K SFQE + +DS
Sbjct: 305 QNEKYPQLVQQLEKYFQKNNSVEDCILDGEIVVTDSKGNIK--SFQEQQQNRKRKQDSNK 362
Query: 1068 VITIKSVKVDICVFVFDIMFANG-EQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVE 1126
V+ ++ +++FDI+F N EQ L R+ +K+ F E G +A+ +
Sbjct: 363 VVAFDEDNIEK-IYLFDILFLNACEQNTKEQL-YRKSLIKENFPIE--GPVNHAESKIFD 418
Query: 1127 GDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
L+ ++ +++ + EG +VKSLD + Y + R+ W
Sbjct: 419 -----LSIQKDFDELKKLVKQYIDQKEEGAMVKSLDSNTFYDNNGRTQ-W 462
Score = 93 (37.8 bits), Expect = 7.6e-18, Sum P(2) = 7.6e-18
Identities = 48/215 (22%), Positives = 97/215 (45%)
Query: 715 YIHLARTFD---LVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENI 771
+ LA+ FD + + I+A+ L N + + + + V L T K+ S E I
Sbjct: 34 FYFLAKQFDDISKISSRNSGIEAIETLMNDY--IQGGDNELFIQMVRLLTCKVDS--EEI 89
Query: 772 ELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQXXXXXXXXX-----X 826
++ SLV I + + ++ + GD+G A+E + +
Sbjct: 90 QI-ANSSLVE--ILKVVYPQEDITKFLFEK-GDIGLYAKEMLEKKLEKEGNNRTEKNHLS 145
Query: 827 IKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREK-EMKFLVRTLVRNLRIGAMMRTI 885
I +V S K+ G S K+ LI++ + ++ E+++ +R L ++LRIG ++I
Sbjct: 146 ILEVTSFFEKLKNLQGDRSRLEKQELIIDFLKKIQDPLEIQYFIRILSKSLRIGVSEKSI 205
Query: 886 LPALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAA 920
+ AL +N + S + ++N+++K+ + A
Sbjct: 206 IKALTN---INKKKKNSLDSLLKNVQDKIFGYNTA 237
>UNIPROTKB|B4E135 [details] [associations]
symbol:LIG1 "DNA ligase 1" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003910 "DNA ligase
(ATP) activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
InterPro:IPR012308 Pfam:PF04675 GO:GO:0003677 GO:GO:0006281
GO:GO:0006310 EMBL:AC011466 GO:GO:0003910 Gene3D:1.10.3260.10
SUPFAM:SSF117018 UniGene:Hs.1770 HGNC:HGNC:6598 ChiTaRS:LIG1
EMBL:AK303644 IPI:IPI01011052 SMR:B4E135 Ensembl:ENST00000542460
Uniprot:B4E135
Length = 415
Score = 223 (83.6 bits), Expect = 4.7e-15, P = 4.7e-15
Identities = 39/110 (35%), Positives = 65/110 (59%)
Query: 687 MDPTLVSLPPEKYDPIEHACWSSGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLL 746
+DP+ + Y P+E ACW GQ PY+ +ARTF+ +E +++ + L N+ RS++
Sbjct: 229 LDPSGYNPAKNNYHPVEDACWKPGQKVPYLAVARTFEKIEEVSARLRMVETLSNLLRSVV 288
Query: 747 ALSPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEACGTNRSKIR 796
ALSP D+LP +YL N + + +EL +G ++ A+ +A G R + R
Sbjct: 289 ALSPPDLLPVLYLSLNHLGPPQQGLELGVGDGVLLKAVAQATGRERRETR 338
>UNIPROTKB|Q23RI5 [details] [associations]
symbol:TTHERM_00387050 "DNA ligase" species:312017
"Tetrahymena thermophila SB210" [GO:0003910 "DNA ligase (ATP)
activity" evidence=IBA] [GO:0005694 "chromosome" evidence=IBA]
[GO:0006266 "DNA ligation" evidence=IBA] [GO:0006273 "lagging
strand elongation" evidence=IBA] [GO:0006289 "nucleotide-excision
repair" evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IBA] [GO:0032807 "DNA ligase IV
complex" evidence=IBA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
InterPro:IPR021536 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
Pfam:PF11411 PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357
GO:GO:0005524 GO:GO:0005694 GO:GO:0003677 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0006303 GO:GO:0006289
GO:GO:0006273 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 KO:K10777 GO:GO:0032807
EMBL:GG662644 RefSeq:XP_001019308.1 UniGene:Tth.9167
ProteinModelPortal:Q23RI5 EnsemblProtists:EAR99063 GeneID:7825974
KEGG:tet:TTHERM_00387050 ProtClustDB:CLSZ2445781 Uniprot:Q23RI5
Length = 1026
Score = 201 (75.8 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 70/228 (30%), Positives = 113/228 (49%)
Query: 957 PIKPMLA--KITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTS 1014
PIKPMLA K + +LK K + E K+DG+R Q H + ++ F+RN + T+
Sbjct: 326 PIKPMLAGRKTLKSIEAILK---GKNYLVETKFDGERIQCHVSPE-SLMFFTRNSNNYTN 381
Query: 1015 RFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIM-SFQELSSRERGGKDSVITIKS 1073
+ +I + K A + ILD E+V +++ G ++ + + ER +D + I
Sbjct: 382 IYERMIEHVRRSLKDAVHSCILDGEMVVVNKITGQRVQFGLNKTVAMER--EDDELCI-- 437
Query: 1074 VKVDICVFVFDIMFA----NGEQLLG-YTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGD 1128
C +FDI++ N E L YTL+ R+K L++L D Q + + G
Sbjct: 438 -----CYKIFDILYLKTKDNKEYALTEYTLQYRKKILENLI-DN-----QQDRVEVIFGR 486
Query: 1129 DNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
+ +D+ L++ N EA+H + EGI++K LD Y P RSD W
Sbjct: 487 EYSDINDI-LTEFN----EAIHRNDEGIVIKQLDTL--YYPDDRSDKW 527
Score = 78 (32.5 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 26/105 (24%), Positives = 50/105 (47%)
Query: 795 IRDMYNRLGDLGDVAQECRQTQXXXXXXXXXXIKDVYSMLCKISVQTGSGSTARKKSLIV 854
++D +GD G+V Q Q I DV L +++ Q + A K+ ++
Sbjct: 199 LKDNQQVVGDFGEVVQNVLQA---FTQKATLTINDVDRCLDELA-QPQNRDLASKEKVLR 254
Query: 855 NLMCSCREKEMKFLVRTLVRNLRIGAMMRTILPAL-AQAVVMNSS 898
N + + +E+K++ R ++++L +G IL AVV+ +S
Sbjct: 255 NCLKNATSEEIKWISRLILKDLNLGINHEIILALFHPDAVVLFNS 299
>UNIPROTKB|Q9FCB1 [details] [associations]
symbol:lig "Probable DNA ligase" species:100226
"Streptomyces coelicolor A3(2)" [GO:0003910 "DNA ligase (ATP)
activity" evidence=IBA] [GO:0005694 "chromosome" evidence=IBA]
[GO:0006266 "DNA ligation" evidence=IBA] [GO:0006273 "lagging
strand elongation" evidence=IBA] [GO:0006289 "nucleotide-excision
repair" evidence=IBA] HAMAP:MF_00407 InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 InterPro:IPR022865 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160
GO:GO:0005524 GO:GO:0005694 GO:GO:0051301 GO:GO:0046872
GO:GO:0003677 GO:GO:0007049 GO:GO:0006310 GenomeReviews:AL645882_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006289
GO:GO:0006273 eggNOG:COG1793 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574 OMA:ARVQVHK
HOGENOM:HOG000036008 KO:K01971 ProtClustDB:PRK03180 EMBL:AL939108
RefSeq:NP_625491.1 ProteinModelPortal:Q9FCB1 GeneID:1096625
KEGG:sco:SCO1202 PATRIC:23731956 Uniprot:Q9FCB1
Length = 512
Score = 169 (64.5 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 55/156 (35%), Positives = 78/156 (50%)
Query: 955 GVPIKPMLAKITNGVPQVL-KLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETT 1013
G P+ PMLA + V + + KL A E K DG R Q+H+ GTVRI++R D+ T
Sbjct: 181 GQPVLPMLAHSASSVAEAVGKL---GAAAVEEKLDGIRVQVHR-DGGTVRIYTRTLDDIT 236
Query: 1014 SRFPDLISIINEFCKPAAGT-FILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIK 1072
R P+ + E G FILD E +++D +G + SFQE + R D +
Sbjct: 237 DRLPE----VTEAALALPGERFILDGEAISLDA-DG-RPRSFQETAGRVGSRTDVATAAR 290
Query: 1073 SVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDL 1108
+V V VF FD++ +G LL L +R L L
Sbjct: 291 AVPVS-AVF-FDVLSVDGRDLLDLPLTERHAELARL 324
Score = 123 (48.4 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 60/221 (27%), Positives = 94/221 (42%)
Query: 964 KITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRI-FSRNGDET---TSRFPDL 1019
++T G P + L + + E A + + +DG +R+ R+G T D+
Sbjct: 177 RLTVGQPVLPMLAHSASSVAEAVGKLGAAAVEEKLDG-IRVQVHRDGGTVRIYTRTLDDI 235
Query: 1020 ISIINEFCKPAAGT----FILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVK 1075
+ E + A FILD E +++D +G + SFQE + R D ++V
Sbjct: 236 TDRLPEVTEAALALPGERFILDGEAISLDA-DG-RPRSFQETAGRVGSRTDVATAARAVP 293
Query: 1076 VDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSD 1135
V VF FD++ +G LL L +R L L E + + V G + D
Sbjct: 294 VS-AVF-FDVLSVDGRDLLDLPLTERHAELARLV-PEPLR----VRRTLVHGPE-----D 341
Query: 1136 VSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
++ FL L EG++VK LD A YS +R SW
Sbjct: 342 TGAAE--EFLARTLARGHEGVVVKGLD--AAYSAGRRGASW 378
Score = 92 (37.4 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 21/66 (31%), Positives = 36/66 (54%)
Query: 827 IKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTIL 886
++DV + L ++ +G+GS A + L+ LM + E E +FL+ L +R GA+ +
Sbjct: 75 VRDVDARLTRLGAVSGAGSQAERTRLVGELMGAATEDEQRFLIGLLTGEVRQGALDAAAV 134
Query: 887 PALAQA 892
LA A
Sbjct: 135 EGLAAA 140
>WB|WBGene00045237 [details] [associations]
symbol:mrt-1 species:6239 "Caenorhabditis elegans"
[GO:0008408 "3'-5' exonuclease activity" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0000003
"reproduction" evidence=IMP] [GO:0007004 "telomere maintenance via
telomerase" evidence=IGI] [GO:0006289 "nucleotide-excision repair"
evidence=IMP] [GO:0005634 "nucleus" evidence=IC] InterPro:IPR001279
SMART:SM00849 GO:GO:0005634 GO:GO:0000003 GO:GO:0003697
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0008408 GO:GO:0007004
GO:GO:0006289 eggNOG:COG1236 InterPro:IPR011084 Pfam:PF07522
EMBL:Z81080 RefSeq:NP_740895.1 ProteinModelPortal:Q8T3E0 SMR:Q8T3E0
PaxDb:Q8T3E0 EnsemblMetazoa:F39H2.5.1 EnsemblMetazoa:F39H2.5.2
GeneID:172666 KEGG:cel:CELE_F39H2.5 UCSC:F39H2.5.1 CTD:172666
WormBase:F39H2.5 GeneTree:ENSGT00390000008639 HOGENOM:HOG000018686
InParanoid:Q8T3E0 OMA:HENIVIP NextBio:876487 Uniprot:Q8T3E0
Length = 608
Score = 197 (74.4 bits), Expect = 5.0e-12, Sum P(2) = 5.0e-12
Identities = 56/144 (38%), Positives = 74/144 (51%)
Query: 65 FLSHFHSDHYTGLSPSWSKGIIFCSEITSRLLSQILNI---NPK---FIYPLPIKIPVLI 118
FL+H HSDHY GL W++ + +CS T++LL I+ +P I PL +P
Sbjct: 238 FLTHAHSDHYRGLDKKWTRSV-YCSPETAKLLPHIMGYTADSPPPAGLINPLEENVPHKF 296
Query: 119 DGCEVVLVGANHCPGAVQFLF---KVPGRNGGFERYVHTGDFRFCKTML--LQPV----- 168
D +V LV ANHCPGAV F+F K+ GG + TGDFR K L L+P
Sbjct: 297 DSFQVTLVNANHCPGAVMFVFEGSKIEEIAGG--AVLCTGDFRADKMFLESLKPGNQLHW 354
Query: 169 MNEFAGCDAVFLDTTYCNPKFLFP 192
M E ++LD TY + FP
Sbjct: 355 MTEIK-FGIIYLDNTYFSLDMPFP 377
Score = 52 (23.4 bits), Expect = 5.0e-12, Sum P(2) = 5.0e-12
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 323 VPYSEHSNYDELREYVKFLKPKRVIP-TVGMDIEKLDS-KHANK 364
+PYS+HS+ E+ +++ K + P T I +L S ++A K
Sbjct: 490 IPYSDHSSRSEILKFLSHFHFKTITPCTKKYSIIELASLENAGK 533
>ZFIN|ZDB-GENE-070820-10 [details] [associations]
symbol:lig4 "ligase IV, DNA, ATP-dependent"
species:7955 "Danio rerio" [GO:0051103 "DNA ligation involved in
DNA repair" evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0003909 "DNA ligase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016874 "ligase activity" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 InterPro:IPR021536
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 Pfam:PF11411 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357 Pfam:PF00533
ZFIN:ZDB-GENE-070820-10 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 OMA:HMCPSTK GeneTree:ENSGT00700000104500
EMBL:BX908780 IPI:IPI00860741 Ensembl:ENSDART00000085648
Bgee:F1Q9E8 Uniprot:F1Q9E8
Length = 909
Score = 179 (68.1 bits), Expect = 7.5e-12, Sum P(2) = 7.5e-12
Identities = 73/270 (27%), Positives = 116/270 (42%)
Query: 914 LQSLSAAAVEAYNXXXXXXXXXXXXMNKGIGFSASTLSMVPGVPIKPMLAKITNGVPQVL 973
LQ A E YN + + S ++ + KPMLA + N + Q+
Sbjct: 209 LQVFHPDAPEFYNVTTDLNKVCRQLHDPSVSLSEVSIDLFSA--FKPMLAAVAN-IRQIE 265
Query: 974 KLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRF---P---DLISIINEFC 1027
K N+ F E K DG+R Q+HK D + ++RN E T +F P L I+
Sbjct: 266 KQMGNRPFYIETKLDGERIQLHKAGD-VYKYYTRNSYEYTQQFGASPLEGSLTPYIHNVF 324
Query: 1028 KPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGK-DSVITIKSVKVDICVFVFDIM 1086
P ILD E++A + K +F + +G K D + + C VFD++
Sbjct: 325 SPHVVNCILDGEMMAYNPKTE----TFMQ-----KGSKFDIKRLVDDSDLQTCFCVFDVL 375
Query: 1087 FANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLE 1146
N ++ L++R + L+ +F K +K EG ++ ++ N L
Sbjct: 376 LINNQKFGKEPLKKRYESLETVFSPIKGRIHLVSKS---EGR--------TMQEVVNSLN 424
Query: 1147 EALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
EA+ + EGI+VK D + Y P KR + W
Sbjct: 425 EAIDNREEGIMVK--DPMSIYKPDKRGEGW 452
Score = 74 (31.1 bits), Expect = 7.5e-12, Sum P(2) = 7.5e-12
Identities = 14/60 (23%), Positives = 33/60 (55%)
Query: 827 IKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTIL 886
IK+V L +++ S + K +++L+ E K+L+R +++++++G T+L
Sbjct: 150 IKEVNDFLDSVAINNASKQKDQVKKSLLHLITQSSALEQKWLIRMILKDMKLGISKETVL 209
>UNIPROTKB|Q90YB1 [details] [associations]
symbol:LIG4 "DNA ligase 4" species:9031 "Gallus gallus"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0051103 "DNA ligation
involved in DNA repair" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0006266 "DNA ligation"
evidence=IBA] [GO:0006273 "lagging strand elongation" evidence=IBA]
[GO:0006289 "nucleotide-excision repair" evidence=IBA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IBA;TAS] [GO:0032807 "DNA ligase IV complex" evidence=IBA]
[GO:0033151 "V(D)J recombination" evidence=IBA] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006302 "double-strand break repair" evidence=TAS] [GO:0070419
"nonhomologous end joining complex" evidence=ISS]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 InterPro:IPR021536
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 Pfam:PF11411 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357 Pfam:PF00533
GO:GO:0005524 GO:GO:0005694 GO:GO:0005654 GO:GO:0051301
GO:GO:0046872 GO:GO:0003677 GO:GO:0007049 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 GO:GO:0006303 GO:GO:0006289 Reactome:REACT_115612
GO:GO:0006273 eggNOG:COG1793 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574 KO:K10777
GO:GO:0032807 EMBL:AB058600 EMBL:AJ720061 IPI:IPI00651271
RefSeq:NP_001025987.1 UniGene:Gga.1352 ProteinModelPortal:Q90YB1
SMR:Q90YB1 STRING:Q90YB1 PRIDE:Q90YB1 GeneID:418764 KEGG:gga:418764
CTD:3981 HOGENOM:HOG000007831 HOVERGEN:HBG005516 InParanoid:Q90YB1
OrthoDB:EOG4Q58NP NextBio:20821908 GO:GO:0070419 GO:GO:0033151
Uniprot:Q90YB1
Length = 912
Score = 186 (70.5 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 71/239 (29%), Positives = 112/239 (46%)
Query: 946 SASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTV-RI 1004
S S +S++ KPMLA I + V Q+ K N+ F E K DG+R Q+HK DG V +
Sbjct: 239 SLSDVSIMLFSAFKPMLAAIAD-VQQIEKQMNNQVFYIETKLDGERMQMHK--DGDVYKY 295
Query: 1005 FSRNGDETTSRF---P---DLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELS 1058
FSRNG + T +F P L I+ K ILD E++A + + +F +
Sbjct: 296 FSRNGFDYTQQFGASPVDGSLTPFIHNVFKSDIQNCILDGEMMAYNPET----QTFMQ-- 349
Query: 1059 SRERGGK-DSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYF 1117
+G K D ++ + C VFD++ N ++L +L +R K L ++F G
Sbjct: 350 ---KGNKFDIKRMVEDSDLQTCFCVFDVLMINDQKLAHESLSKRYKILSNVF-TPLTGRI 405
Query: 1118 QYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
+ + + ++ + L EA+ + EGI+VK D + Y P KR + W
Sbjct: 406 HVVHKKSAR----------TRKEVIDALNEAIDNREEGIMVK--DPMSTYKPDKRGEGW 452
Score = 63 (27.2 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 849 KKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTI 885
KKSL+ L+ E K+L+R ++++L++G +TI
Sbjct: 173 KKSLL-QLITQSTALEQKWLIRMIIKDLKLGVSQQTI 208
>UNIPROTKB|Q5QJC2 [details] [associations]
symbol:DCLRE1C "Protein artemis" species:9031 "Gallus
gallus" [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR001279
SMART:SM00849 GO:GO:0005634 GO:GO:0006281 GO:GO:0006310
GO:GO:0004527 GO:GO:0090305 GO:GO:0004519 eggNOG:COG1236
InterPro:IPR011084 Pfam:PF07522 EMBL:AY376898 IPI:IPI00602543
RefSeq:NP_001026765.1 UniGene:Gga.22874 ProteinModelPortal:Q5QJC2
STRING:Q5QJC2 GeneID:430764 KEGG:gga:430764 CTD:64421
HOGENOM:HOG000231568 HOVERGEN:HBG081421 InParanoid:Q5QJC2 KO:K10887
OrthoDB:EOG4894M0 NextBio:20830567 Uniprot:Q5QJC2
Length = 714
Score = 175 (66.7 bits), Expect = 1.9e-11, Sum P(3) = 1.9e-11
Identities = 80/297 (26%), Positives = 132/297 (44%)
Query: 86 IFCSEITSRLLSQILNINPKF----IYPLPIKIPV---LID---G----CEVVLVGANHC 131
++CS +T LL + N F I L ++ P L+D G EV L+ A HC
Sbjct: 59 LYCSPVTKELL--LTNSKYAFWENHIVALEVETPTQISLVDETTGEKEDIEVTLLPAGHC 116
Query: 132 PGAVQFLFKVPGRNGGFERYVHTGDFRFCK----TMLLQPVMNEFAGCDAVFLDTTYCNP 187
PG+V FLF+ G NG ++TGDFR K M L +V+LDTT+C+P
Sbjct: 117 PGSVMFLFQ--GENG---TVLYTGDFRLAKGEAARMELLHSGTSVKDIQSVYLDTTFCDP 171
Query: 188 KFL-FPLQXXXXXXXXXXXXXXXXXXXXXLQKRVLFLVATYVIGKEKILIEIFKKCGRKV 246
+F P + + V++L G E + I + ++ G KV
Sbjct: 172 RFYHIPSREECLSGILELVRSWTTLS----RYHVVWLNCKAAYGYEYLFINLSEELGIKV 227
Query: 247 CVDSRKM--EVLRVLGYGDSGVFTEDES----ETDVHVVGWNE----IMVERGYD-KVVG 295
V+ M + +L + + +T+ + + D +V G N I + G V+
Sbjct: 228 HVNKLDMFKNMPEILYHITTDRYTQIHACRHPKDDDYVRG-NRLPCGITCQNGTPLHVIS 286
Query: 296 FVP-TGWTYE-VKRNKFAVRSKDAFEIHLVPYSEHSNYDELREYVKFLKPKRVIPTV 350
P T W E +K+ VR+ ++ + +S HS+Y E+ +++ +++P V P V
Sbjct: 287 IKPSTMWFGERIKKTNVIVRTGES--TYRACFSFHSSYSEIMDFLSYIRPVNVYPNV 341
Score = 76 (31.8 bits), Expect = 1.9e-11, Sum P(3) = 1.9e-11
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 51 IDAFRYAADFSVSYFLSHFHSDHYTGL-SPSWSKGI-------IFCSEITSRLL 96
ID F Y + +YFLSH H DH GL +P+ + + ++CS +T LL
Sbjct: 16 IDRFDYDNLRARAYFLSHCHKDHMKGLRAPALRRRLQSSLKVKLYCSPVTKELL 69
Score = 41 (19.5 bits), Expect = 1.9e-11, Sum P(3) = 1.9e-11
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 559 PNMSQGDVVESKSEECPKD 577
P+ + + + KSE+C KD
Sbjct: 622 PSCASDVICDLKSEDCEKD 640
Score = 37 (18.1 bits), Expect = 4.8e-11, Sum P(3) = 4.8e-11
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 536 VPSKMESSGAKQPTITSFF--NKLLPNMSQGDVVESKSE 572
+PS + S A P+ FF NK+ + D S ++
Sbjct: 491 IPSNQQESNADIPSWDMFFKCNKVDESSENEDNFPSSAD 529
>UNIPROTKB|F1NW11 [details] [associations]
symbol:DCLRE1C "Protein artemis" species:9031 "Gallus
gallus" [GO:0000014 "single-stranded DNA specific
endodeoxyribonuclease activity" evidence=IEA] [GO:0000723 "telomere
maintenance" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0008409 "5'-3' exonuclease activity" evidence=IEA] [GO:0010212
"response to ionizing radiation" evidence=IEA] [GO:0030183 "B cell
differentiation" evidence=IEA] InterPro:IPR001279 SMART:SM00849
GO:GO:0010212 GO:GO:0006310 GO:GO:0006302 GO:GO:0000723
GO:GO:0000014 GO:GO:0008409 InterPro:IPR011084 Pfam:PF07522
GeneTree:ENSGT00530000063183 IPI:IPI00602543 OMA:MFRNMPD
EMBL:AADN02060984 Ensembl:ENSGALT00000022573 Uniprot:F1NW11
Length = 714
Score = 174 (66.3 bits), Expect = 2.4e-11, Sum P(3) = 2.4e-11
Identities = 80/297 (26%), Positives = 132/297 (44%)
Query: 86 IFCSEITSRLLSQILNINPKF----IYPLPIKIPV---LID---G----CEVVLVGANHC 131
++CS +T LL + N F I L ++ P L+D G EV L+ A HC
Sbjct: 59 LYCSPVTKELL--LTNSKYAFWENHIAALEVETPTQISLVDETTGEKEDIEVTLLPAGHC 116
Query: 132 PGAVQFLFKVPGRNGGFERYVHTGDFRFCK----TMLLQPVMNEFAGCDAVFLDTTYCNP 187
PG+V FLF+ G NG ++TGDFR K M L +V+LDTT+C+P
Sbjct: 117 PGSVMFLFQ--GENG---TVLYTGDFRLAKGEAARMELLHSGTSVKDIQSVYLDTTFCDP 171
Query: 188 KFL-FPLQXXXXXXXXXXXXXXXXXXXXXLQKRVLFLVATYVIGKEKILIEIFKKCGRKV 246
+F P + + V++L G E + I + ++ G KV
Sbjct: 172 RFYHIPSREECLSGILELVRSWTTLS----RYHVVWLNCKAAYGYEYLFINLSEELGIKV 227
Query: 247 CVDSRKM--EVLRVLGYGDSGVFTEDES----ETDVHVVGWNE----IMVERGYD-KVVG 295
V+ M + +L + + +T+ + + D +V G N I + G V+
Sbjct: 228 HVNKLDMFKNMPEILYHITTDRYTQIHACRHPKDDDYVRG-NRLPCGITCQNGTPLHVIS 286
Query: 296 FVP-TGWTYE-VKRNKFAVRSKDAFEIHLVPYSEHSNYDELREYVKFLKPKRVIPTV 350
P T W E +K+ VR+ ++ + +S HS+Y E+ +++ +++P V P V
Sbjct: 287 IKPSTMWFGERIKKTNVIVRTGES--TYRACFSFHSSYSEIMDFLSYIRPVNVYPNV 341
Score = 76 (31.8 bits), Expect = 2.4e-11, Sum P(3) = 2.4e-11
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 51 IDAFRYAADFSVSYFLSHFHSDHYTGL-SPSWSKGI-------IFCSEITSRLL 96
ID F Y + +YFLSH H DH GL +P+ + + ++CS +T LL
Sbjct: 16 IDRFDYDNLRARAYFLSHCHKDHMKGLRAPALRRRLQSSLKVKLYCSPVTKELL 69
Score = 41 (19.5 bits), Expect = 2.4e-11, Sum P(3) = 2.4e-11
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 559 PNMSQGDVVESKSEECPKD 577
P+ + + + KSE+C KD
Sbjct: 622 PSCASDVICDLKSEDCEKD 640
Score = 37 (18.1 bits), Expect = 6.1e-11, Sum P(3) = 6.1e-11
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 536 VPSKMESSGAKQPTITSFF--NKLLPNMSQGDVVESKSE 572
+PS + S A P+ FF NK+ + D S ++
Sbjct: 491 IPSNQQESNADIPSWDMFFKCNKVDESSENEDNFPSSAD 529
>UNIPROTKB|F1P275 [details] [associations]
symbol:LIG4 "DNA ligase" species:9031 "Gallus gallus"
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003910 "DNA ligase
(ATP) activity" evidence=IEA] [GO:0050769 "positive regulation of
neurogenesis" evidence=IEA] [GO:0051102 "DNA ligation involved in
DNA recombination" evidence=IEA] [GO:0051103 "DNA ligation involved
in DNA repair" evidence=IEA] [GO:0051276 "chromosome organization"
evidence=IEA] [GO:0051402 "neuron apoptotic process" evidence=IEA]
[GO:0000012 "single strand break repair" evidence=IEA] [GO:0000793
"condensed chromosome" evidence=IEA] [GO:0001701 "in utero
embryonic development" evidence=IEA] [GO:0002328 "pro-B cell
differentiation" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0005925 "focal adhesion" evidence=IEA]
[GO:0005958 "DNA-dependent protein kinase-DNA ligase 4 complex"
evidence=IEA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IEA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IEA] [GO:0007417 "central
nervous system development" evidence=IEA] [GO:0008022 "protein
C-terminus binding" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0010332 "response to gamma radiation" evidence=IEA] [GO:0032807
"DNA ligase IV complex" evidence=IEA] [GO:0033077 "T cell
differentiation in thymus" evidence=IEA] [GO:0033152
"immunoglobulin V(D)J recombination" evidence=IEA] [GO:0033153 "T
cell receptor V(D)J recombination" evidence=IEA] [GO:0035019
"somatic stem cell maintenance" evidence=IEA] [GO:0043524 "negative
regulation of neuron apoptotic process" evidence=IEA] [GO:0045190
"isotype switching" evidence=IEA] [GO:0048146 "positive regulation
of fibroblast proliferation" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 InterPro:IPR021536 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 Pfam:PF11411 PROSITE:PS00333 PROSITE:PS00697
PROSITE:PS50160 InterPro:IPR001357 Pfam:PF00533 GO:GO:0005886
GO:GO:0005524 GO:GO:0005737 GO:GO:0003677 GO:GO:0008283
GO:GO:0006260 GO:GO:0051402 GO:GO:0043524 GO:GO:0005925
GO:GO:0010332 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0000793 GO:GO:0048146 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 GO:GO:0010165 GO:GO:0051276 GO:GO:0000012
GO:GO:0005958 GO:GO:0006303 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574
GO:GO:0006297 OMA:HMCPSTK GO:GO:0032807 IPI:IPI00651271
GO:GO:0051102 GeneTree:ENSGT00700000104500 EMBL:AADN02029083
Ensembl:ENSGALT00000027230 Uniprot:F1P275
Length = 912
Score = 184 (69.8 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 71/239 (29%), Positives = 111/239 (46%)
Query: 946 SASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTV-RI 1004
S S +S++ KPMLA I + V Q+ K N+ F E K DG+R Q+HK DG V +
Sbjct: 239 SLSDVSIMLFSAFKPMLAAIAD-VQQIEKQMNNQVFYIETKLDGERMQMHK--DGDVYKY 295
Query: 1005 FSRNGDETTSRF---P---DLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELS 1058
FSRNG + T +F P L I+ K ILD E++A + + +F +
Sbjct: 296 FSRNGFDYTQQFGASPVDGSLTPFIHNVFKSDIQNCILDGEMMAYNPET----QTFMQ-- 349
Query: 1059 SRERGGK-DSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYF 1117
+G K D ++ + C VFD++ N ++L +L R K L ++F G
Sbjct: 350 ---KGNKFDIKRMVEDSDLQTCFCVFDVLMINDQKLAHESLSTRYKILSNVF-TPLTGRI 405
Query: 1118 QYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
+ + + ++ + L EA+ + EGI+VK D + Y P KR + W
Sbjct: 406 HVVHKKSAR----------TRKEVIDALNEAIDNREEGIMVK--DPMSTYKPDKRGEGW 452
Score = 63 (27.2 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 849 KKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTI 885
KKSL+ L+ E K+L+R ++++L++G +TI
Sbjct: 173 KKSLL-QLITQSTALEQKWLIRMIIKDLKLGVSQQTI 208
>RGD|1304639 [details] [associations]
symbol:Lig4 "ligase IV, DNA, ATP-dependent" species:10116
"Rattus norvegicus" [GO:0000012 "single strand break repair"
evidence=IEA;ISO] [GO:0000793 "condensed chromosome"
evidence=IEA;ISO] [GO:0001701 "in utero embryonic development"
evidence=IEA;ISO] [GO:0002328 "pro-B cell differentiation"
evidence=IEA;ISO] [GO:0003677 "DNA binding" evidence=ISO;IDA]
[GO:0003909 "DNA ligase activity" evidence=ISO] [GO:0003910 "DNA
ligase (ATP) activity" evidence=ISO;IDA] [GO:0005524 "ATP binding"
evidence=ISO;IDA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0005886 "plasma membrane" evidence=IEA;ISO]
[GO:0005925 "focal adhesion" evidence=IEA;ISO] [GO:0005958
"DNA-dependent protein kinase-DNA ligase 4 complex"
evidence=IEA;ISO] [GO:0006266 "DNA ligation" evidence=ISO;IDA]
[GO:0006273 "lagging strand elongation" evidence=IBA] [GO:0006281
"DNA repair" evidence=ISO] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IEA;ISO] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=ISO;IBA] [GO:0007417 "central
nervous system development" evidence=IEA;ISO] [GO:0008022 "protein
C-terminus binding" evidence=IEA;ISO] [GO:0008283 "cell
proliferation" evidence=IEA;ISO] [GO:0010165 "response to X-ray"
evidence=IEA;ISO] [GO:0010212 "response to ionizing radiation"
evidence=ISO] [GO:0010332 "response to gamma radiation"
evidence=IEA;ISO] [GO:0016874 "ligase activity" evidence=ISO]
[GO:0032807 "DNA ligase IV complex" evidence=ISO;IBA] [GO:0033077
"T cell differentiation in thymus" evidence=IEA;ISO] [GO:0033151
"V(D)J recombination" evidence=ISO;IBA] [GO:0033152 "immunoglobulin
V(D)J recombination" evidence=IEA;ISO] [GO:0033153 "T cell receptor
V(D)J recombination" evidence=IEA;ISO] [GO:0035019 "somatic stem
cell maintenance" evidence=IEA;ISO] [GO:0043524 "negative
regulation of neuron apoptotic process" evidence=IEA;ISO]
[GO:0045190 "isotype switching" evidence=IEA;ISO] [GO:0048146
"positive regulation of fibroblast proliferation" evidence=IEA;ISO]
[GO:0050769 "positive regulation of neurogenesis" evidence=IEA;ISO]
[GO:0051102 "DNA ligation involved in DNA recombination"
evidence=IEA;ISO] [GO:0051103 "DNA ligation involved in DNA repair"
evidence=IEA;ISO] [GO:0051276 "chromosome organization"
evidence=IEA;ISO] [GO:0051402 "neuron apoptotic process"
evidence=IEA;ISO] [GO:0070419 "nonhomologous end joining complex"
evidence=ISO] [GO:0071285 "cellular response to lithium ion"
evidence=IEP] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 InterPro:IPR021536
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 Pfam:PF11411 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357 Pfam:PF00533
RGD:1304639 GO:GO:0005886 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0003677 GO:GO:0008283 GO:GO:0001701 GO:GO:0051402
GO:GO:0007417 GO:GO:0043524 GO:GO:0005925 GO:GO:0010332
GO:GO:0050769 GO:GO:0033077 GO:GO:0035019 GO:GO:0045190
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0000793
GO:GO:0048146 EMBL:CH473970 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 GO:GO:0010165 GO:GO:0051276 GO:GO:0000012
GO:GO:0005958 GO:GO:0006303 GO:GO:0006289 GO:GO:0033153
GO:GO:0071285 GO:GO:0006273 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574
GO:GO:0006297 KO:K10777 OMA:HMCPSTK GO:GO:0032807 CTD:3981
OrthoDB:EOG4Q58NP GO:GO:0033151 GO:GO:0051102 GO:GO:0033152
GO:GO:0002328 GeneTree:ENSGT00700000104500 IPI:IPI00202196
RefSeq:NP_001099565.1 UniGene:Rn.219326 Ensembl:ENSRNOT00000019615
GeneID:290907 KEGG:rno:290907 UCSC:RGD:1304639 NextBio:631821
Uniprot:D4A0U6
Length = 911
Score = 167 (63.8 bits), Expect = 5.5e-11, Sum P(2) = 5.5e-11
Identities = 71/265 (26%), Positives = 118/265 (44%)
Query: 921 AVEAYNXXXXXXXXXXXXMNKGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKA 980
AVE +N + +G S ++++ +PMLA + + V +V K + ++
Sbjct: 211 AVELHNVTTDLEKVCRQLHDPSVGLSDISITLFSA--FRPMLAAVAD-VERVEKDMKQQS 267
Query: 981 FTCEYKYDGQRAQIHKLVDGTV-RIFSRNGDETTSRFPD------LISIINEFCKPAAGT 1033
F E K DG+R Q+HK DG + R FSRNG T +F + L I+ K
Sbjct: 268 FYIETKLDGERMQMHK--DGALYRYFSRNGYNYTDQFGESPQEGSLTPFIHNAFKTDVQV 325
Query: 1034 FILDAEVVAIDRKNGCKIMSFQELSSRERGGK-DSVITIKSVKVDICVFVFDIMFANGEQ 1092
ILD E++A + +F + +G K D ++ + C VFD++ N ++
Sbjct: 326 CILDGEMMAYNPTT----QTFMQ-----KGVKFDIKRMVEDSDLQTCYCVFDVLMVNNKK 376
Query: 1093 LLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSS 1152
L TLR+R L F + G + ++ T + ++ + L +A+
Sbjct: 377 LGRETLRKRYDILSSTFTPIQ-GRIEIVQK----------TQAQTKQEVVDALNDAIDKR 425
Query: 1153 CEGIIVKS-LDVDAGYSPSKRSDSW 1176
EGI+VK L + Y P KR + W
Sbjct: 426 EEGIMVKHPLSI---YKPDKRGEGW 447
Score = 78 (32.5 bits), Expect = 5.5e-11, Sum P(2) = 5.5e-11
Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 827 IKDVYSMLCKI-SVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTI 885
I+ V +L + S +G KKSL+ L+ C E K+L+R ++++L++G TI
Sbjct: 145 IQKVNELLDLVASNNSGKRKDLVKKSLL-QLITQCSALEQKWLIRMIIKDLKLGVSQHTI 203
Query: 886 L 886
L
Sbjct: 204 L 204
>UNIPROTKB|P95096 [details] [associations]
symbol:lig "Probable DNA ligase" species:1773
"Mycobacterium tuberculosis" [GO:0000287 "magnesium ion binding"
evidence=IDA] [GO:0003910 "DNA ligase (ATP) activity" evidence=IDA]
[GO:0005618 "cell wall" evidence=IDA] [GO:0006266 "DNA ligation"
evidence=IDA] HAMAP:MF_00407 InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
InterPro:IPR022865 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524
GO:GO:0005618 GO:GO:0051301 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0000287 GO:GO:0003677 GO:GO:0006260
GO:GO:0007049 GO:GO:0006310 EMBL:BX842581 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 eggNOG:COG1793 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 HSSP:P18858 OMA:ARVQVHK HOGENOM:HOG000036008
PIR:G70649 RefSeq:NP_217578.1 RefSeq:NP_337667.1
RefSeq:YP_006516523.1 ProteinModelPortal:P95096 SMR:P95096
PRIDE:P95096 EnsemblBacteria:EBMYCT00000001759
EnsemblBacteria:EBMYCT00000071799 GeneID:13317866 GeneID:887553
GeneID:923636 KEGG:mtc:MT3148 KEGG:mtu:Rv3062 KEGG:mtv:RVBD_3062
PATRIC:18128680 TubercuList:Rv3062 KO:K01971 ProtClustDB:PRK03180
Uniprot:P95096
Length = 507
Score = 147 (56.8 bits), Expect = 6.5e-11, Sum P(2) = 6.5e-11
Identities = 47/151 (31%), Positives = 72/151 (47%)
Query: 944 GFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVR 1003
G + T ++ G PI PMLA+ V L+ E K DG R QIH+ D VR
Sbjct: 170 GAALDTFTLRVGRPIGPMLAQTATSVHDALERHGGTTIF-EAKLDGARVQIHRAND-QVR 227
Query: 1004 IFSRNGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERG 1063
I++R+ D+ T+R P+++ P + D E +A+ N + FQ +SR G
Sbjct: 228 IYTRSLDDVTARLPEVVEAT--LALPVRD-LVADGEAIALCPDN--RPQRFQVTASRF-G 281
Query: 1064 GKDSVITIKSVKVDICVFVFDIMFANGEQLL 1094
V ++ + + VF FDI+ +G LL
Sbjct: 282 RSVDVAAARATQ-PLSVFFFDILHRDGTDLL 311
Score = 91 (37.1 bits), Expect = 6.5e-11, Sum P(2) = 6.5e-11
Identities = 24/66 (36%), Positives = 34/66 (51%)
Query: 827 IKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTIL 886
+ V + L KI G GS A++ +L+ L + E E FL+R L LR GA +
Sbjct: 77 VTGVDATLSKIGTLPGKGSQAQRAALVAELFSAATEAEQTFLLRLLGGELRQGAKGGIMA 136
Query: 887 PALAQA 892
A+AQA
Sbjct: 137 DAVAQA 142
>UNIPROTKB|E2RNT6 [details] [associations]
symbol:LIG3 "DNA ligase" species:9615 "Canis lupus
familiaris" [GO:0003910 "DNA ligase (ATP) activity" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0051103 "DNA ligation involved in DNA repair" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000977 InterPro:IPR001510
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF00645 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00347 PROSITE:PS00697
PROSITE:PS50064 PROSITE:PS50160 InterPro:IPR001357 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0008270 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574
Gene3D:3.30.1740.10 GeneTree:ENSGT00700000104500 EMBL:AAEX03006627
Ensembl:ENSCAFT00000029122 Uniprot:E2RNT6
Length = 938
Score = 193 (73.0 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 66/220 (30%), Positives = 102/220 (46%)
Query: 957 PIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRF 1016
P++PMLA+ + +K N F+ E KYDG+R Q+HK D FSR+
Sbjct: 393 PVQPMLAEACKSIEHAMKKCPNGMFS-EIKYDGERVQVHKNGDH-FSYFSRSLKPV---L 447
Query: 1017 PDLISIINEFCK---PAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKS 1073
P ++ ++ P + ILD+EV+ ID K G K + F L ++
Sbjct: 448 PHKVAHFKDYIPQAFPGGHSMILDSEVLLIDTKTG-KPLPFGTLGVHKKAAFQDA----- 501
Query: 1074 VKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYD-EKMGYFQYAKEMTVEGDDNCL 1132
++C+FVFD ++ N L+ L +RRK+L D + F K++T
Sbjct: 502 ---NVCLFVFDCIYFNDVSLMDRPLSERRKFLHDNMVEIPNRIMFSEMKQVTK------- 551
Query: 1133 TSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKR 1172
SD+ + IN + E L EG+++K DV Y P KR
Sbjct: 552 ASDL-VDMINRVIREGL----EGLVLK--DVKGTYEPGKR 584
Score = 49 (22.3 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 22/81 (27%), Positives = 33/81 (40%)
Query: 444 KDVTALDDEETEKMVQEIRNCLPTWVTQNQILDLISSSGRNIVDAVSNFYEHETQLYEQE 503
K V L+D++ K+ I NC P + DL G ++ + + F+E
Sbjct: 229 KSVYNLNDKQIVKLFSRIFNCNP----DDMARDL--EQG-DVSETIRVFFEQSRSFPPAA 281
Query: 504 YKLPTIKHSIKSTLSPSKRKK 524
L TI+ K L SK K
Sbjct: 282 KSLLTIQEVDKFLLQLSKLTK 302
Score = 47 (21.6 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 25/99 (25%), Positives = 35/99 (35%)
Query: 488 AVSNFYEHETQLYEQEYKLPTIKHSIKSTLSPSKRKKTVTNNPKKKGKVPSKMESSGAKQ 547
A + E T+L E K I ++ K T T PKKK V +K+ ++G
Sbjct: 65 ATTKKIEDLTELEGWEELEDNEKEQISQHIADLSSKATGT--PKKKAVVQAKLTATGQVT 122
Query: 548 PTI--TSFFNKLLPNMSQG-DVVESKSEECPKDENPLQS 583
+ SF P G + S E P S
Sbjct: 123 SPVKGASFVTNTNPRKFSGFSAKPNNSGEARSSPTPKAS 161
>TAIR|locus:2167175 [details] [associations]
symbol:AT5G17360 "AT5G17360" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002688 GenomeReviews:BA000015_GR EMBL:AL391142
EMBL:BT003698 EMBL:AK118392 IPI:IPI00518496 PIR:T51573
RefSeq:NP_197238.1 UniGene:At.31562 EnsemblPlants:AT5G17360.1
GeneID:831602 KEGG:ath:AT5G17360 TAIR:At5g17360 eggNOG:NOG265190
HOGENOM:HOG000153005 OMA:CETERSE ProtClustDB:CLSN2914878
Genevestigator:Q9LF48 Uniprot:Q9LF48
Length = 175
Score = 163 (62.4 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 33/65 (50%), Positives = 44/65 (67%)
Query: 438 LEEFGSKDVTALDDEETEKMVQEIRNCLPTWVTQNQILDLISSSGRNIVDAVSNFYEHET 497
L+E S D+T E +++E+R CLP WVTQ Q+ D+I + RNIV+ V NFYEHET
Sbjct: 11 LDEKVSMDLTC----GQEAILEELRICLPKWVTQEQVTDMIRGTCRNIVEIVDNFYEHET 66
Query: 498 QLYEQ 502
+ YEQ
Sbjct: 67 KFYEQ 71
Score = 156 (60.0 bits), Expect = 5.9e-10, P = 5.9e-10
Identities = 38/87 (43%), Positives = 51/87 (58%)
Query: 476 DLISSSGRNIVDAVSNFYEHETQLYE-----QEYKLPTIKHSIKSTLSPSKRKKTVTNNP 530
D ISSS + + F ET+ E Q +KL ++ S KS++SP KR + + P
Sbjct: 82 DGISSSNHDAFVSKLEFIHCETERSESCQPSQFHKLKSMSSSQKSSISPVKRNRKIKGKP 141
Query: 531 KKKGKVPSKMESSGAKQPTITSFFNKL 557
KKKGK SK+ES G KQ +IT FFNK+
Sbjct: 142 KKKGKASSKVESGGPKQASITKFFNKV 168
>UNIPROTKB|J9P597 [details] [associations]
symbol:LIG3 "DNA ligase" species:9615 "Canis lupus
familiaris" [GO:0003910 "DNA ligase (ATP) activity" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0051103 "DNA ligation involved in DNA repair" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000977 InterPro:IPR001510
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF00645 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00347 PROSITE:PS00697
PROSITE:PS50064 PROSITE:PS50160 InterPro:IPR001357 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0008270 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574 OMA:WSETDLL
Gene3D:3.30.1740.10 GeneTree:ENSGT00700000104500 EMBL:AAEX03006627
Ensembl:ENSCAFT00000048097 Uniprot:J9P597
Length = 957
Score = 193 (73.0 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 66/220 (30%), Positives = 102/220 (46%)
Query: 957 PIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRF 1016
P++PMLA+ + +K N F+ E KYDG+R Q+HK D FSR+
Sbjct: 447 PVQPMLAEACKSIEHAMKKCPNGMFS-EIKYDGERVQVHKNGDH-FSYFSRSLKPV---L 501
Query: 1017 PDLISIINEFCK---PAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKS 1073
P ++ ++ P + ILD+EV+ ID K G K + F L ++
Sbjct: 502 PHKVAHFKDYIPQAFPGGHSMILDSEVLLIDTKTG-KPLPFGTLGVHKKAAFQDA----- 555
Query: 1074 VKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYD-EKMGYFQYAKEMTVEGDDNCL 1132
++C+FVFD ++ N L+ L +RRK+L D + F K++T
Sbjct: 556 ---NVCLFVFDCIYFNDVSLMDRPLSERRKFLHDNMVEIPNRIMFSEMKQVTK------- 605
Query: 1133 TSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKR 1172
SD+ + IN + E L EG+++K DV Y P KR
Sbjct: 606 ASDL-VDMINRVIREGL----EGLVLK--DVKGTYEPGKR 638
Score = 49 (22.3 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 22/81 (27%), Positives = 33/81 (40%)
Query: 444 KDVTALDDEETEKMVQEIRNCLPTWVTQNQILDLISSSGRNIVDAVSNFYEHETQLYEQE 503
K V L+D++ K+ I NC P + DL G ++ + + F+E
Sbjct: 283 KSVYNLNDKQIVKLFSRIFNCNP----DDMARDL--EQG-DVSETIRVFFEQSRSFPPAA 335
Query: 504 YKLPTIKHSIKSTLSPSKRKK 524
L TI+ K L SK K
Sbjct: 336 KSLLTIQEVDKFLLQLSKLTK 356
Score = 47 (21.6 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 25/99 (25%), Positives = 35/99 (35%)
Query: 488 AVSNFYEHETQLYEQEYKLPTIKHSIKSTLSPSKRKKTVTNNPKKKGKVPSKMESSGAKQ 547
A + E T+L E K I ++ K T T PKKK V +K+ ++G
Sbjct: 119 ATTKKIEDLTELEGWEELEDNEKEQISQHIADLSSKATGT--PKKKAVVQAKLTATGQVT 176
Query: 548 PTI--TSFFNKLLPNMSQG-DVVESKSEECPKDENPLQS 583
+ SF P G + S E P S
Sbjct: 177 SPVKGASFVTNTNPRKFSGFSAKPNNSGEARSSPTPKAS 215
>MGI|MGI:109152 [details] [associations]
symbol:Lig3 "ligase III, DNA, ATP-dependent" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000794 "condensed nuclear chromosome" evidence=IDA]
[GO:0000795 "synaptonemal complex" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003909 "DNA ligase activity"
evidence=ISO] [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006266 "DNA ligation" evidence=IBA]
[GO:0006273 "lagging strand elongation" evidence=IBA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IMP] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016874 "ligase
activity" evidence=IEA] [GO:0043504 "mitochondrial DNA repair"
evidence=IMP] [GO:0045910 "negative regulation of DNA
recombination" evidence=IMP] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051103 "DNA ligation involved in DNA repair"
evidence=IEA] [GO:0051301 "cell division" evidence=IEA]
InterPro:IPR000977 InterPro:IPR001510 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF00645 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00347 PROSITE:PS00697 PROSITE:PS50064 PROSITE:PS50160
InterPro:IPR001357 EMBL:U66057 MGI:MGI:109152 GO:GO:0005739
GO:GO:0005524 GO:GO:0005634 GO:GO:0051301 GO:GO:0046872
GO:GO:0003677 GO:GO:0006260 GO:GO:0008270 GO:GO:0007049
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0006303
GO:GO:0006289 GO:GO:0045910 GO:GO:0043504 GO:GO:0006273
eggNOG:COG1793 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 HOGENOM:HOG000007653
HOVERGEN:HBG005515 OrthoDB:EOG44BB1K Gene3D:3.30.1740.10
EMBL:U66058 EMBL:AL645594 IPI:IPI00124272 IPI:IPI00230471
UniGene:Mm.277136 ProteinModelPortal:P97386 SMR:P97386
IntAct:P97386 STRING:P97386 PhosphoSite:P97386 PaxDb:P97386
PRIDE:P97386 InParanoid:P97386 Bgee:P97386 CleanEx:MM_LIG3
Genevestigator:P97386 GermOnline:ENSMUSG00000020697 GO:GO:0000795
Uniprot:P97386
Length = 1015
Score = 189 (71.6 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 65/220 (29%), Positives = 102/220 (46%)
Query: 957 PIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRF 1016
P++PMLA+ + +K N F+ E KYDG+R Q+HK D FSR+
Sbjct: 485 PVQPMLAEACKSIEYAMKKCPNGMFS-EIKYDGERVQVHKKGDH-FSYFSRSLKPV---L 539
Query: 1017 PDLISIINEFCK---PAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKS 1073
P ++ ++ P + ILD+EV+ ID G K + F L ++
Sbjct: 540 PHKVAHFKDYIPKAFPGGQSMILDSEVLLIDNNTG-KPLPFGTLGVHKKAAFQDA----- 593
Query: 1074 VKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGY-FQYAKEMTVEGDDNCL 1132
++C+FVFD ++ N L+ L +RRK+L D + + F K++T D
Sbjct: 594 ---NVCLFVFDCIYFNDVSLMDRPLCERRKFLHDNMVEIRNRIMFSEMKQVTKASD---- 646
Query: 1133 TSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKR 1172
+D+ IN + E L EG+++K DV Y P KR
Sbjct: 647 LADM----INRVIREGL----EGLVLK--DVKGTYEPGKR 676
Score = 53 (23.7 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 24/97 (24%), Positives = 35/97 (36%)
Query: 488 AVSNFYEHETQLYEQEYKLPTIKHSIKSTLSPSKRKKTVTNNPKKKGKVPSKMESSGAKQ 547
A + E T+L E K I ++ K T PKKK V +K+ ++G
Sbjct: 153 ATTKKIEDLTELEGWEELEDNEKEQISQHIADLSSKAAAT--PKKKAAVQAKLTTTGQVT 210
Query: 548 PTI--TSFFNKLLPNMSQG--DVVESKSEECPKDENP 580
+ SF P G + SE+ P P
Sbjct: 211 SPVKGASFITSTNPRKFSGFSAAKPNNSEQAPSSPAP 247
Score = 47 (21.6 bits), Expect = 1.7e-09, Sum P(3) = 1.7e-09
Identities = 16/73 (21%), Positives = 31/73 (42%)
Query: 343 PKRVIPTVGMDIEKLDSKHANKMRKYFAGLVDEMASKKEFLMGFHRGTSEIDENVEEGAG 402
P P + K D KH + + + F L +A + + T I + +++G+
Sbjct: 242 PSSPAPGTSLSASKCDPKHKDCLLREFRKLCAMVAENPSY----NTKTQIIHDFLQKGST 297
Query: 403 SGSNEGLSKEGEV 415
G ++G G+V
Sbjct: 298 GGFSDGF--HGDV 308
Score = 42 (19.8 bits), Expect = 1.7e-09, Sum P(3) = 1.7e-09
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 444 KDVTALDDEETEKMVQEIRNCLP 466
K V L+D++ K+ I NC P
Sbjct: 321 KSVYNLNDKQIVKLFSRIFNCNP 343
>RGD|1309875 [details] [associations]
symbol:Lig3 "ligase III, DNA, ATP-dependent" species:10116
"Rattus norvegicus" [GO:0000794 "condensed nuclear chromosome"
evidence=ISO] [GO:0000795 "synaptonemal complex" evidence=IEA;ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003909 "DNA ligase activity"
evidence=ISO] [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO;IBA] [GO:0005694 "chromosome" evidence=IBA]
[GO:0005739 "mitochondrion" evidence=IBA] [GO:0006266 "DNA
ligation" evidence=IBA] [GO:0006273 "lagging strand elongation"
evidence=IBA] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IEA;ISO] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043504 "mitochondrial DNA repair" evidence=IEA;ISO]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IEA;ISO] [GO:0051103 "DNA ligation involved in DNA repair"
evidence=IEA] [GO:0033151 "V(D)J recombination" evidence=ISO]
InterPro:IPR000977 InterPro:IPR001510 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF00645 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00347 PROSITE:PS00697 PROSITE:PS50064 PROSITE:PS50160
RGD:1309875 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694 GO:GO:0003677
GO:GO:0008270 GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0006289 GO:GO:0006273 eggNOG:COG1793
GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 KO:K10776 CTD:3980 HOGENOM:HOG000007653
HOVERGEN:HBG005515 Gene3D:3.30.1740.10 GeneTree:ENSGT00700000104500
EMBL:BC085959 IPI:IPI00565239 RefSeq:NP_001012011.1
UniGene:Rn.230056 SMR:Q5U2M4 STRING:Q5U2M4
Ensembl:ENSRNOT00000055982 GeneID:303369 KEGG:rno:303369
NextBio:651212 Genevestigator:Q5U2M4 Uniprot:Q5U2M4
Length = 943
Score = 189 (71.6 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 65/220 (29%), Positives = 102/220 (46%)
Query: 957 PIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRF 1016
P++PMLA+ + +K N F+ E KYDG+R Q+HK D FSR+
Sbjct: 482 PVQPMLAEACKSIEYAMKKCPNGMFS-EIKYDGERVQVHKKGDH-FSYFSRSLKPV---L 536
Query: 1017 PDLISIINEFCK---PAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKS 1073
P ++ ++ P + ILD+EV+ ID G K + F L ++
Sbjct: 537 PHKVAHFKDYIPKAFPGGQSMILDSEVLLIDNNTG-KPLPFGTLGVHKKAAFQDA----- 590
Query: 1074 VKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGY-FQYAKEMTVEGDDNCL 1132
++C+FVFD ++ N L+ L +RRK+L D + + F K++T D
Sbjct: 591 ---NVCLFVFDCIYFNDVSLMDRPLCERRKFLHDNMVEIRNRIMFSEMKQVTKASD---- 643
Query: 1133 TSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKR 1172
+D+ IN + E L EG+++K DV Y P KR
Sbjct: 644 LADM----INRVIREGL----EGLVLK--DVKGTYEPGKR 673
Score = 51 (23.0 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 25/100 (25%), Positives = 36/100 (36%)
Query: 488 AVSNFYEHETQLYEQEYKLPTIKHSIKSTLSPSKRKKTVTNNPKKKGKVPSKMESSGAKQ 547
A + E T+L E K I ++ K T PKKK V +K+ ++G
Sbjct: 153 ATTKKIEDLTELEGWEELEDNEKEQISQHIADLSSKTAAT--PKKKATVQAKLTTTGQVT 210
Query: 548 PTI--TSFFNKLLPNMSQG--DVVESKSEECPKDENPLQS 583
+ SF P G + SE+ P P S
Sbjct: 211 SPVKGASFITSTNPRKFSGFSAAKPNNSEQDPSSPAPKTS 250
Score = 42 (19.8 bits), Expect = 8.3e-09, Sum P(3) = 8.3e-09
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 444 KDVTALDDEETEKMVQEIRNCLP 466
K V L+D++ K+ I NC P
Sbjct: 318 KSVYNLNDKQIVKLFSRIFNCNP 340
Score = 39 (18.8 bits), Expect = 8.3e-09, Sum P(3) = 8.3e-09
Identities = 14/63 (22%), Positives = 26/63 (41%)
Query: 343 PKRVIPTVGMDIEKLDSKHANKMRKYFAGLVDEMASKKEFLMGFHRGTSEIDENVEEGA- 401
P P + K D KH + + + F L +A + + T I + +++G+
Sbjct: 242 PSSPAPKTSLSASKCDPKHKDCLLREFRKLCAMVAENPSY----NTKTQIIHDFLQKGST 297
Query: 402 GSG 404
G G
Sbjct: 298 GDG 300
Score = 37 (18.1 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 13/56 (23%), Positives = 22/56 (39%)
Query: 501 EQEYKLPTIKHSIKSTLSPSKRKKTVTNNPKKKGKVPSKMESSGAKQPTITSFFNK 556
EQ+ P K S+ ++ K K + +K + ++ S K I F K
Sbjct: 239 EQDPSSPAPKTSLSASKCDPKHKDCLLREFRKLCAMVAENPSYNTKTQIIHDFLQK 294
>UNIPROTKB|Q5R6L3 [details] [associations]
symbol:DNL4 "DNA ligase 4" species:9601 "Pongo abelii"
[GO:0070419 "nonhomologous end joining complex" evidence=ISS]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 InterPro:IPR021536
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 Pfam:PF11411 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357 Pfam:PF00533
GO:GO:0005524 GO:GO:0005634 GO:GO:0051301 GO:GO:0046872
GO:GO:0003677 GO:GO:0006260 GO:GO:0007049 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574 KO:K10777
CTD:3981 HOVERGEN:HBG005516 GO:GO:0070419 EMBL:CR860475
RefSeq:NP_001126522.1 UniGene:Pab.18738 ProteinModelPortal:Q5R6L3
SMR:Q5R6L3 PRIDE:Q5R6L3 GeneID:100173511 KEGG:pon:100173511
InParanoid:Q5R6L3 Uniprot:Q5R6L3
Length = 911
Score = 174 (66.3 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 72/265 (27%), Positives = 120/265 (45%)
Query: 921 AVEAYNXXXXXXXXXXXXMNKGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKA 980
AVE +N + +G S ++++ KPMLA I + + + K ++++
Sbjct: 211 AVELHNVTTDLEKVCRQLHDPSVGLSDISITLFSA--FKPMLAAIAD-IEHIEKDMKHQS 267
Query: 981 FTCEYKYDGQRAQIHKLVDGTV-RIFSRNGDETTSRF---P---DLISIINEFCKPAAGT 1033
F E K DG+R Q+HK DG V + FSRNG T +F P L I+ K
Sbjct: 268 FYIETKLDGERMQMHK--DGDVYKYFSRNGYNYTDQFGASPTEGSLTPFIHNAFKTDIQI 325
Query: 1034 FILDAEVVAIDRKNGCKIMSFQELSSRERGGK-DSVITIKSVKVDICVFVFDIMFANGEQ 1092
ILD E++A + +F + +G K D ++ + C VFD++ N ++
Sbjct: 326 CILDGEMMAYNPNT----QTFMQ-----KGTKFDIKRMVEDSDLQTCYCVFDVLMVNNKK 376
Query: 1093 LLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSS 1152
L TLR+R + L +F G + ++ T + +++ + L EA+
Sbjct: 377 LGHETLRKRYEILSSIFTPIP-GRIEIVQK----------TQAHTKNEVIDALNEAIDKR 425
Query: 1153 CEGIIVKS-LDVDAGYSPSKRSDSW 1176
EGI++K L + Y P KR + W
Sbjct: 426 EEGIMIKQPLSI---YKPDKRGEGW 447
Score = 66 (28.3 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 16/60 (26%), Positives = 35/60 (58%)
Query: 843 SGSTARKKSLI----VNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILPAL-AQAVVMNS 897
S ++A++K LI + L+ E K+L+R ++++L++G +TI + AV +++
Sbjct: 157 SNNSAKRKDLIKKSLLQLITQSSALEQKWLIRMIIKDLKLGVSQQTIFSVFHSDAVELHN 216
>UNIPROTKB|D4A2K2 [details] [associations]
symbol:Lig3 "DNA ligase" species:10116 "Rattus norvegicus"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003910 "DNA ligase
(ATP) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0051103 "DNA ligation involved in DNA
repair" evidence=IEA] InterPro:IPR000977 InterPro:IPR001510
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF00645 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00347 PROSITE:PS00697
PROSITE:PS50064 PROSITE:PS50160 RGD:1309875 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0008270 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 OrthoDB:EOG44BB1K Gene3D:3.30.1740.10
IPI:IPI00563728 PRIDE:D4A2K2 Ensembl:ENSRNOT00000047849
ArrayExpress:D4A2K2 Uniprot:D4A2K2
Length = 955
Score = 189 (71.6 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 65/220 (29%), Positives = 102/220 (46%)
Query: 957 PIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRF 1016
P++PMLA+ + +K N F+ E KYDG+R Q+HK D FSR+
Sbjct: 486 PVQPMLAEACKSIEYAMKKCPNGMFS-EIKYDGERVQVHKKGDH-FSYFSRSLKPV---L 540
Query: 1017 PDLISIINEFCK---PAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKS 1073
P ++ ++ P + ILD+EV+ ID G K + F L ++
Sbjct: 541 PHKVAHFKDYIPKAFPGGQSMILDSEVLLIDNNTG-KPLPFGTLGVHKKAAFQDA----- 594
Query: 1074 VKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGY-FQYAKEMTVEGDDNCL 1132
++C+FVFD ++ N L+ L +RRK+L D + + F K++T D
Sbjct: 595 ---NVCLFVFDCIYFNDVSLMDRPLCERRKFLHDNMVEIRNRIMFSEMKQVTKASD---- 647
Query: 1133 TSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKR 1172
+D+ IN + E L EG+++K DV Y P KR
Sbjct: 648 LADM----INRVIREGL----EGLVLK--DVKGTYEPGKR 677
Score = 51 (23.0 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 25/100 (25%), Positives = 36/100 (36%)
Query: 488 AVSNFYEHETQLYEQEYKLPTIKHSIKSTLSPSKRKKTVTNNPKKKGKVPSKMESSGAKQ 547
A + E T+L E K I ++ K T PKKK V +K+ ++G
Sbjct: 153 ATTKKIEDLTELEGWEELEDNEKEQISQHIADLSSKTAAT--PKKKATVQAKLTTTGQVT 210
Query: 548 PTI--TSFFNKLLPNMSQG--DVVESKSEECPKDENPLQS 583
+ SF P G + SE+ P P S
Sbjct: 211 SPVKGASFITSTNPRKFSGFSAAKPNNSEQDPSSPAPKTS 250
Score = 42 (19.8 bits), Expect = 5.5e-09, Sum P(3) = 5.5e-09
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 444 KDVTALDDEETEKMVQEIRNCLP 466
K V L+D++ K+ I NC P
Sbjct: 322 KSVYNLNDKQIVKLFSRIFNCNP 344
Score = 41 (19.5 bits), Expect = 5.5e-09, Sum P(3) = 5.5e-09
Identities = 16/66 (24%), Positives = 29/66 (43%)
Query: 343 PKRVIPTVGMDIEKLDSKHANKMRKYFAGLVDEMASKKEFLMGFHRGTSEIDENVEEGA- 401
P P + K D KH + + + F L +A + + T I + +++G+
Sbjct: 242 PSSPAPKTSLSASKCDPKHKDCLLREFRKLCAMVAENPSY----NTKTQIIHDFLQKGST 297
Query: 402 GS-GSN 406
G+ GSN
Sbjct: 298 GAVGSN 303
Score = 37 (18.1 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 13/56 (23%), Positives = 22/56 (39%)
Query: 501 EQEYKLPTIKHSIKSTLSPSKRKKTVTNNPKKKGKVPSKMESSGAKQPTITSFFNK 556
EQ+ P K S+ ++ K K + +K + ++ S K I F K
Sbjct: 239 EQDPSSPAPKTSLSASKCDPKHKDCLLREFRKLCAMVAENPSYNTKTQIIHDFLQK 294
>UNIPROTKB|D4A837 [details] [associations]
symbol:Lig3 "DNA ligase" species:10116 "Rattus norvegicus"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003910 "DNA ligase
(ATP) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0051103 "DNA ligation involved in DNA
repair" evidence=IEA] InterPro:IPR000977 InterPro:IPR001510
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF00645 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00347 PROSITE:PS00697
PROSITE:PS50064 PROSITE:PS50160 InterPro:IPR001357 RGD:1309875
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0008270 GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 Gene3D:3.30.1740.10 IPI:IPI00370404
Ensembl:ENSRNOT00000029555 ArrayExpress:D4A837 Uniprot:D4A837
Length = 1014
Score = 189 (71.6 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 65/220 (29%), Positives = 102/220 (46%)
Query: 957 PIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRF 1016
P++PMLA+ + +K N F+ E KYDG+R Q+HK D FSR+
Sbjct: 486 PVQPMLAEACKSIEYAMKKCPNGMFS-EIKYDGERVQVHKKGDH-FSYFSRSLKPV---L 540
Query: 1017 PDLISIINEFCK---PAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKS 1073
P ++ ++ P + ILD+EV+ ID G K + F L ++
Sbjct: 541 PHKVAHFKDYIPKAFPGGQSMILDSEVLLIDNNTG-KPLPFGTLGVHKKAAFQDA----- 594
Query: 1074 VKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGY-FQYAKEMTVEGDDNCL 1132
++C+FVFD ++ N L+ L +RRK+L D + + F K++T D
Sbjct: 595 ---NVCLFVFDCIYFNDVSLMDRPLCERRKFLHDNMVEIRNRIMFSEMKQVTKASD---- 647
Query: 1133 TSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKR 1172
+D+ IN + E L EG+++K DV Y P KR
Sbjct: 648 LADM----INRVIREGL----EGLVLK--DVKGTYEPGKR 677
Score = 51 (23.0 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 25/100 (25%), Positives = 36/100 (36%)
Query: 488 AVSNFYEHETQLYEQEYKLPTIKHSIKSTLSPSKRKKTVTNNPKKKGKVPSKMESSGAKQ 547
A + E T+L E K I ++ K T PKKK V +K+ ++G
Sbjct: 153 ATTKKIEDLTELEGWEELEDNEKEQISQHIADLSSKTAAT--PKKKATVQAKLTTTGQVT 210
Query: 548 PTI--TSFFNKLLPNMSQG--DVVESKSEECPKDENPLQS 583
+ SF P G + SE+ P P S
Sbjct: 211 SPVKGASFITSTNPRKFSGFSAAKPNNSEQDPSSPAPKTS 250
Score = 42 (19.8 bits), Expect = 6.9e-09, Sum P(3) = 6.9e-09
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 444 KDVTALDDEETEKMVQEIRNCLP 466
K V L+D++ K+ I NC P
Sbjct: 322 KSVYNLNDKQIVKLFSRIFNCNP 344
Score = 41 (19.5 bits), Expect = 6.9e-09, Sum P(3) = 6.9e-09
Identities = 16/66 (24%), Positives = 29/66 (43%)
Query: 343 PKRVIPTVGMDIEKLDSKHANKMRKYFAGLVDEMASKKEFLMGFHRGTSEIDENVEEGA- 401
P P + K D KH + + + F L +A + + T I + +++G+
Sbjct: 242 PSSPAPKTSLSASKCDPKHKDCLLREFRKLCAMVAENPSY----NTKTQIIHDFLQKGST 297
Query: 402 GS-GSN 406
G+ GSN
Sbjct: 298 GAVGSN 303
Score = 37 (18.1 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 13/56 (23%), Positives = 22/56 (39%)
Query: 501 EQEYKLPTIKHSIKSTLSPSKRKKTVTNNPKKKGKVPSKMESSGAKQPTITSFFNK 556
EQ+ P K S+ ++ K K + +K + ++ S K I F K
Sbjct: 239 EQDPSSPAPKTSLSASKCDPKHKDCLLREFRKLCAMVAENPSYNTKTQIIHDFLQK 294
>DICTYBASE|DDB_G0283857 [details] [associations]
symbol:lig3 "DNA ligase III" species:44689
"Dictyostelium discoideum" [GO:0051103 "DNA ligation involved in
DNA repair" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IEA;IBA] [GO:0003909 "DNA ligase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IBA] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] [GO:0006273 "lagging strand elongation" evidence=IBA]
[GO:0006266 "DNA ligation" evidence=IBA] [GO:0005694 "chromosome"
evidence=IBA] [GO:0005634 "nucleus" evidence=IEA;IBA] [GO:0051301
"cell division" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016874 "ligase activity" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357
dictyBase:DDB_G0283857 Pfam:PF00533 GO:GO:0005524 GO:GO:0005634
GO:GO:0005694 GO:GO:0051301 GenomeReviews:CM000153_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0007049 GO:GO:0006310 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AAFI02000057 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0006289 GO:GO:0006273
eggNOG:COG1793 GO:GO:0003910 GO:GO:0051103 TIGRFAMs:TIGR00574
RefSeq:XP_638847.1 ProteinModelPortal:Q54QM4
EnsemblProtists:DDB0232266 GeneID:8624245 KEGG:ddi:DDB_G0283857
KO:K10776 OMA:INTGAKF ProtClustDB:CLSZ2736577 Uniprot:Q54QM4
Length = 1175
Score = 195 (73.7 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 67/220 (30%), Positives = 105/220 (47%)
Query: 957 PIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGT-VRIFSRNGDETTSR 1015
PIKPML K V V+K ++ F E KYDG+R QIHK DG +SRN
Sbjct: 256 PIKPMLPKAVKTVEGVVK--SSECFYAEIKYDGERIQIHK--DGNQFSCYSRN---LKPL 308
Query: 1016 FPDLISIINEFCKPA--AGTFILDAEVVAIDRKNGCKIMSFQELSSRERGG-KDSVITIK 1072
P + + + + A ILD E++ +D K + + F LS+ ++ G KD+ +
Sbjct: 309 MPWKVDEVKPYIPKSTKAQQMILDGEILLMDTKTS-QPLPFGTLSAHKKNGFKDATV--- 364
Query: 1073 SVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCL 1132
CVF+FDI++ NG+ L+ L++RR+ L+ K ++++ V G
Sbjct: 365 ------CVFLFDILYLNGKSLIHLPLKERREILEKNVMVVK-NRIEFSEVTIVNG----- 412
Query: 1133 TSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKR 1172
S+ S K+ L EG+++K D + Y P R
Sbjct: 413 ASEKS--KLTALLNRVFKEKLEGLVIK--DAMSEYEPGCR 448
Score = 46 (21.3 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 21/95 (22%), Positives = 39/95 (41%)
Query: 797 DMYNRLGDLGDVAQECRQTQXXXXXX---XXXXIKDVYSMLCKISVQTGSGSTARKKSLI 853
DM L D GD + C++ +K+V +L ++V SG + +I
Sbjct: 80 DMIEDL-DNGDFTETCKKFYIEYGKYPEKSTLTLKEVDQVLDSLTV---SGKFEDQVKII 135
Query: 854 VNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILPA 888
L+ C + + + R + +L+I + L A
Sbjct: 136 NKLLKRCTPFDFRLVCRIIDSDLKINTGAKFFLDA 170
>UNIPROTKB|F1MQY1 [details] [associations]
symbol:LIG3 "DNA ligase" species:9913 "Bos taurus"
[GO:0045910 "negative regulation of DNA recombination"
evidence=IEA] [GO:0043504 "mitochondrial DNA repair" evidence=IEA]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0000795 "synaptonemal complex" evidence=IEA] [GO:0003910 "DNA
ligase (ATP) activity" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0051103
"DNA ligation involved in DNA repair" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000977 InterPro:IPR001510
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF00645 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00347 PROSITE:PS00697
PROSITE:PS50064 PROSITE:PS50160 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006260 GO:GO:0008270 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 OMA:WSETDLL Gene3D:3.30.1740.10
GeneTree:ENSGT00700000104500 EMBL:DAAA02048465 IPI:IPI00905942
UniGene:Bt.25483 Ensembl:ENSBTAT00000024875 Uniprot:F1MQY1
Length = 943
Score = 190 (71.9 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 66/220 (30%), Positives = 102/220 (46%)
Query: 957 PIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRF 1016
P++PMLA+ + +K N F+ E KYDG+R Q+HK D FSR+
Sbjct: 482 PVQPMLAEACKSIEYAMKKCPNGMFS-EIKYDGERVQVHKKGDH-FSYFSRSLKPV---L 536
Query: 1017 PDLISIINEFCK---PAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKS 1073
P ++ +F P + ILD+EV+ ID + G K + F L ++
Sbjct: 537 PHKVAHFKDFIPRAFPGGHSMILDSEVLLIDNRTG-KPLPFGTLGVHKKAAFQDA----- 590
Query: 1074 VKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYD-EKMGYFQYAKEMTVEGDDNCL 1132
++C+FVFD ++ N L+ L +RRK L D + F K++T
Sbjct: 591 ---NVCLFVFDCIYFNDVSLMDRPLCERRKLLHDNMVEIPNRIMFSEMKQVTK------- 640
Query: 1133 TSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKR 1172
SD+ + IN ++E L EG+++K DV Y P KR
Sbjct: 641 ASDL-VDMINRVIQEGL----EGLVLK--DVKGTYEPGKR 673
Score = 46 (21.3 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 488 AVSNFYEHETQLYEQEYKLPTIKHSIKSTLSPSKRKKTVTNNPKKKGKVPSKMESSG 544
A + E T+L E K I ++ K T T PKKK V +K+ ++G
Sbjct: 151 ATTKKIEDLTELEGWEELEENEKEQISQHIADLSSKATST--PKKKAVVQAKLTATG 205
Score = 40 (19.1 bits), Expect = 8.2e-09, Sum P(3) = 8.2e-09
Identities = 15/63 (23%), Positives = 26/63 (41%)
Query: 343 PKRVIPTVGMDIEKLDSKHANKMRKYFAGLVDEMASKKEFLMGFHRGTSEIDENVEEG-A 401
P P + K D KH + + + F L +A + + T I + +++G A
Sbjct: 242 PTPKTPKTSLSSSKCDPKHKDCLLREFRKLCAMVAENPSY----NTKTQIIQDFLQKGSA 297
Query: 402 GSG 404
G G
Sbjct: 298 GDG 300
Score = 40 (19.1 bits), Expect = 8.2e-09, Sum P(3) = 8.2e-09
Identities = 21/81 (25%), Positives = 34/81 (41%)
Query: 444 KDVTALDDEETEKMVQEIRNCLPTWVTQNQILDLISSSGRNIVDAVSNFYEHETQLYEQE 503
K V L+D++ K+ I NC +T+ DL G ++ + + F+E
Sbjct: 318 KSVYNLNDKQIVKLFSRIFNCNSDDMTR----DL--EQG-DVSETIRVFFEQSKSFPPAA 370
Query: 504 YKLPTIKHSIKSTLSPSKRKK 524
L TI+ + L SK K
Sbjct: 371 KSLLTIQEVDEFLLRLSKLTK 391
Score = 39 (18.8 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 32/146 (21%), Positives = 56/146 (38%)
Query: 663 LEKIVSEEL-QHITDMSVQRPSKELMDPTLVSLPPEKYDPIEHACWSSGQPAPYIHLART 721
LE+ E++ QHI D+S + S P+K ++ ++GQ A + A +
Sbjct: 168 LEENEKEQISQHIADLSSKATST-----------PKKKAVVQAKLTATGQVASPVKGA-S 215
Query: 722 FDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENIELNIGGSLVT 781
F + + K S N + SP P L ++K H++ L L
Sbjct: 216 F-VTNSNPRKFSGFSAKPNNSGEAHS-SPTPKTPKTSLSSSKCDPKHKDCLLREFRKLCA 273
Query: 782 SAIEEACGTNRSKIRDMYNRLGDLGD 807
E +++I + + G GD
Sbjct: 274 MVAENPSYNTKTQIIQDFLQKGSAGD 299
>UNIPROTKB|P49917 [details] [associations]
symbol:LIG4 "DNA ligase 4" species:9606 "Homo sapiens"
[GO:0007049 "cell cycle" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0051301 "cell division" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0033152 "immunoglobulin
V(D)J recombination" evidence=IEA] [GO:0071285 "cellular response
to lithium ion" evidence=IEA] [GO:0006273 "lagging strand
elongation" evidence=IBA] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0016874 "ligase
activity" evidence=IDA] [GO:0006297 "nucleotide-excision repair,
DNA gap filling" evidence=IDA] [GO:0000012 "single strand break
repair" evidence=IDA] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IDA] [GO:0006266 "DNA ligation" evidence=IDA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IMP;IDA;TAS] [GO:0033151 "V(D)J recombination"
evidence=IDA] [GO:0032807 "DNA ligase IV complex" evidence=IMP]
[GO:0002328 "pro-B cell differentiation" evidence=ISS] [GO:0005958
"DNA-dependent protein kinase-DNA ligase 4 complex"
evidence=ISS;IDA] [GO:0006302 "double-strand break repair"
evidence=ISS;IDA;TAS] [GO:0007417 "central nervous system
development" evidence=ISS] [GO:0008283 "cell proliferation"
evidence=ISS] [GO:0010332 "response to gamma radiation"
evidence=ISS] [GO:0033153 "T cell receptor V(D)J recombination"
evidence=ISS] [GO:0035019 "somatic stem cell maintenance"
evidence=ISS] [GO:0043524 "negative regulation of neuron apoptotic
process" evidence=ISS] [GO:0045190 "isotype switching"
evidence=ISS] [GO:0050769 "positive regulation of neurogenesis"
evidence=ISS] [GO:0051102 "DNA ligation involved in DNA
recombination" evidence=ISS] [GO:0051103 "DNA ligation involved in
DNA repair" evidence=ISS;IDA] [GO:0051276 "chromosome organization"
evidence=ISS] [GO:0001701 "in utero embryonic development"
evidence=ISS] [GO:0033077 "T cell differentiation in thymus"
evidence=ISS] [GO:0048146 "positive regulation of fibroblast
proliferation" evidence=ISS] [GO:0051402 "neuron apoptotic process"
evidence=ISS] [GO:0000793 "condensed chromosome" evidence=IDA]
[GO:0003909 "DNA ligase activity" evidence=IDA;TAS] [GO:0008022
"protein C-terminus binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0010165 "response to X-ray" evidence=IMP]
[GO:0070419 "nonhomologous end joining complex" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair"
evidence=TAS] [GO:0016032 "viral reproduction" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0005925 "focal adhesion" evidence=IDA] Reactome:REACT_216
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 InterPro:IPR021536
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 Pfam:PF11411 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357 Pfam:PF00533
GO:GO:0005886 GO:GO:0005524 GO:GO:0005737 Reactome:REACT_116125
GO:GO:0005654 GO:GO:0016032 GO:GO:0051301 GO:GO:0046872
GO:GO:0003677 GO:GO:0008283 GO:GO:0001701 GO:GO:0051402
GO:GO:0007417 GO:GO:0043524 GO:GO:0005925 GO:GO:0010332
EMBL:AL157762 GO:GO:0007049 GO:GO:0050769 GO:GO:0033077
GO:GO:0035019 GO:GO:0045190 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0000793 GO:GO:0048146 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0010165 GO:GO:0051276
GO:GO:0000012 GO:GO:0005958 GO:GO:0006303 GO:GO:0033153
GO:GO:0071285 PDB:4HTP PDBsum:4HTP MIM:602450 Orphanet:39041
GO:GO:0006273 eggNOG:COG1793 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574
GO:GO:0006297 BRENDA:6.5.1.1 KO:K10777 OMA:HMCPSTK GO:GO:0032807
CTD:3981 HOGENOM:HOG000007831 HOVERGEN:HBG005516 OrthoDB:EOG4Q58NP
EMBL:X83441 EMBL:AF479264 EMBL:BC037491 IPI:IPI00217669 PIR:I37079
RefSeq:NP_001091738.1 RefSeq:NP_002303.2 RefSeq:NP_996820.1
UniGene:Hs.166091 PDB:1IK9 PDB:2E2W PDB:3II6 PDB:3VNN PDB:4HTO
PDBsum:1IK9 PDBsum:2E2W PDBsum:3II6 PDBsum:3VNN PDBsum:4HTO
ProteinModelPortal:P49917 SMR:P49917 DIP:DIP-37958N IntAct:P49917
MINT:MINT-3018022 STRING:P49917 PhosphoSite:P49917 DMDM:88911290
PaxDb:P49917 PRIDE:P49917 DNASU:3981 Ensembl:ENST00000356922
Ensembl:ENST00000405925 Ensembl:ENST00000442234 GeneID:3981
KEGG:hsa:3981 UCSC:uc001vqn.3 GeneCards:GC13M108859 HGNC:HGNC:6601
HPA:HPA001334 MIM:601837 MIM:606593 neXtProt:NX_P49917
Orphanet:99812 PharmGKB:PA30375 InParanoid:P49917 PhylomeDB:P49917
ChiTaRS:LIG4 EvolutionaryTrace:P49917 GenomeRNAi:3981 NextBio:15604
Bgee:P49917 CleanEx:HS_LIG4 Genevestigator:P49917
GermOnline:ENSG00000174405 GO:GO:0051102 GO:GO:0033152
GO:GO:0002328 Uniprot:P49917
Length = 911
Score = 171 (65.3 bits), Expect = 4.6e-10, Sum P(2) = 4.6e-10
Identities = 72/265 (27%), Positives = 119/265 (44%)
Query: 921 AVEAYNXXXXXXXXXXXXMNKGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKA 980
A E +N + +G S ++++ KPMLA I + + + K ++++
Sbjct: 211 AAELHNVTTDLEKVCRQLHDPSVGLSDISITLFSA--FKPMLAAIAD-IEHIEKDMKHQS 267
Query: 981 FTCEYKYDGQRAQIHKLVDGTV-RIFSRNGDETTSRF---P---DLISIINEFCKPAAGT 1033
F E K DG+R Q+HK DG V + FSRNG T +F P L I+ K
Sbjct: 268 FYIETKLDGERMQMHK--DGDVYKYFSRNGYNYTDQFGASPTEGSLTPFIHNAFKADIQI 325
Query: 1034 FILDAEVVAIDRKNGCKIMSFQELSSRERGGK-DSVITIKSVKVDICVFVFDIMFANGEQ 1092
ILD E++A + +F + +G K D ++ + C VFD++ N ++
Sbjct: 326 CILDGEMMAYNPNT----QTFMQ-----KGTKFDIKRMVEDSDLQTCYCVFDVLMVNNKK 376
Query: 1093 LLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSS 1152
L TLR+R + L +F G + ++ T + +++ + L EA+
Sbjct: 377 LGHETLRKRYEILSSIFTPIP-GRIEIVQK----------TQAHTKNEVIDALNEAIDKR 425
Query: 1153 CEGIIVKS-LDVDAGYSPSKRSDSW 1176
EGI+VK L + Y P KR + W
Sbjct: 426 EEGIMVKQPLSI---YKPDKRGEGW 447
Score = 65 (27.9 bits), Expect = 4.6e-10, Sum P(2) = 4.6e-10
Identities = 14/47 (29%), Positives = 29/47 (61%)
Query: 843 SGSTARKKSLI----VNLMCSCREKEMKFLVRTLVRNLRIGAMMRTI 885
S ++A++K LI + L+ E K+L+R ++++L++G +TI
Sbjct: 157 SNNSAKRKDLIKKSLLQLITQSSALEQKWLIRMIIKDLKLGVSQQTI 203
>RGD|708574 [details] [associations]
symbol:Dclre1c "DNA cross-link repair 1C" species:10116 "Rattus
norvegicus" [GO:0000014 "single-stranded DNA specific
endodeoxyribonuclease activity" evidence=IEA;ISO] [GO:0000723
"telomere maintenance" evidence=IEA;ISO] [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA;ISO] [GO:0006310 "DNA
recombination" evidence=IEA;ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA;ISO] [GO:0010212 "response to ionizing radiation"
evidence=IEA;ISO] [GO:0030183 "B cell differentiation"
evidence=IEA;ISO] [GO:0051276 "chromosome organization"
evidence=ISO] RGD:708574 GO:GO:0005634 GO:GO:0010212 GO:GO:0006310
GO:GO:0030183 GO:GO:0006302 GO:GO:0090305 GO:GO:0000723
eggNOG:COG1236 GO:GO:0000014 GO:GO:0008409 InterPro:IPR011084
Pfam:PF07522 GeneTree:ENSGT00530000063183 CTD:64421
HOGENOM:HOG000231568 HOVERGEN:HBG081421 KO:K10887 OrthoDB:EOG4894M0
OMA:MFRNMPD EMBL:AF395746 EMBL:BC083546 IPI:IPI00209347
RefSeq:NP_671486.2 UniGene:Rn.204346 ProteinModelPortal:Q5XIX3
STRING:Q5XIX3 PhosphoSite:Q5XIX3 PRIDE:Q5XIX3
Ensembl:ENSRNOT00000021506 GeneID:259171 KEGG:rno:259171
UCSC:RGD:708574 InParanoid:Q5XIX3 NextBio:624222
ArrayExpress:Q5XIX3 Genevestigator:Q5XIX3
GermOnline:ENSRNOG00000015980 Uniprot:Q5XIX3
Length = 698
Score = 160 (61.4 bits), Expect = 5.4e-10, Sum P(3) = 5.4e-10
Identities = 77/312 (24%), Positives = 136/312 (43%)
Query: 83 KGIIFCSEITSRLLSQILNINPKF----IYPLPIKIPV---LIDGC-----EVV--LVGA 128
K ++CS +T LL + + KF I + I+ P L+D EVV L+ A
Sbjct: 56 KVFLYCSPVTKELL--LTSPKYKFWENRIIAIEIETPTQVSLVDEASGEKEEVVVTLLPA 113
Query: 129 NHCPGAVQFLFKVPGRNGGFERYVHTGDFRFCKTMLLQPVMNEFAG----CDAVFLDTTY 184
HCPG+V FLF+ G NG ++TGDFR K + + + G +V+LDTT+
Sbjct: 114 GHCPGSVMFLFQ--GSNG---TVLYTGDFRLAKGEVSRMELLHSGGRVKDIQSVYLDTTF 168
Query: 185 CNPKFLFPLQXXXXXXXXXXXXXXXXXXXXXLQKRVLFLVATYVIGKEKILIEIFKKCGR 244
C+P+F Q K V++L G E + + ++ G
Sbjct: 169 CDPRFY---QIPSREECLRGVLELVRSWITRSPKHVVWLNCKAAYGYEYLFTNLSEELGV 225
Query: 245 KVCVDSRKMEVLRVLGYGDSGVFTEDESETDVHVVG---------WNEI---MVERGYDK 292
+V VD K+++ + + D + T +H WN++ M +
Sbjct: 226 QVHVD--KLDMFKNMP--DILHHLTTDRNTQIHACRHPKAEEYFQWNKLPCGMASKTKTV 281
Query: 293 V--VGFVP-TGWTYE-VKRNKFAVRSKDAFEIHLVPYSEHSNYDELREYVKFLKPKRVIP 348
+ + P T W E ++ VR+ ++ + +S HS+Y E+++++ ++ P P
Sbjct: 282 LHTISIKPSTMWFGERTRKTNVIVRTGESS--YRACFSFHSSYSEIKDFLSYICPVNAYP 339
Query: 349 TV---GMDIEKL 357
V G+ ++K+
Sbjct: 340 NVIPIGLTVDKV 351
Score = 74 (31.1 bits), Expect = 5.4e-10, Sum P(3) = 5.4e-10
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 63 SYFLSHFHSDHYTGL-SPSWSKGI-------IFCSEITSRLL 96
+YFLSH H DH GL +PS + + ++CS +T LL
Sbjct: 28 AYFLSHCHKDHMKGLRAPSMKRRLECSLKVFLYCSPVTKELL 69
Score = 44 (20.5 bits), Expect = 5.4e-10, Sum P(3) = 5.4e-10
Identities = 21/97 (21%), Positives = 43/97 (44%)
Query: 521 KRKKTVTNNPKKKGKVPSKMESSGAKQPTITSFFNKLLPNMSQGDVVESKSEECPKDENP 580
KRK +T+ + +PS +E+ G++ P S KL + S G+ S+ + +
Sbjct: 495 KRKDEITDECLEN--LPSSIETGGSQSPKRFSDSPKLGSD-SDGESTHISSQNSSQSTH- 550
Query: 581 LQSNAIKTYGEEIDQFLKIINGNESLKGYAATLLEKT 617
+ + + + D L ++ E G + +L + T
Sbjct: 551 ITDQGSQGWDSQCDTVL--LSSQEKSGGDSTSLNKDT 585
Score = 38 (18.4 bits), Expect = 2.2e-09, Sum P(3) = 2.2e-09
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 1151 SSCEGIIVKSLDVDAGYSPSKRSDSW 1176
S C+ +++ S + G S S D++
Sbjct: 561 SQCDTVLLSSQEKSGGDSTSLNKDTY 586
>UNIPROTKB|F1MB07 [details] [associations]
symbol:LIG4 "DNA ligase" species:9913 "Bos taurus"
[GO:0051402 "neuron apoptotic process" evidence=IEA] [GO:0051276
"chromosome organization" evidence=IEA] [GO:0051103 "DNA ligation
involved in DNA repair" evidence=IEA] [GO:0051102 "DNA ligation
involved in DNA recombination" evidence=IEA] [GO:0050769 "positive
regulation of neurogenesis" evidence=IEA] [GO:0048146 "positive
regulation of fibroblast proliferation" evidence=IEA] [GO:0045190
"isotype switching" evidence=IEA] [GO:0043524 "negative regulation
of neuron apoptotic process" evidence=IEA] [GO:0035019 "somatic
stem cell maintenance" evidence=IEA] [GO:0033153 "T cell receptor
V(D)J recombination" evidence=IEA] [GO:0033152 "immunoglobulin
V(D)J recombination" evidence=IEA] [GO:0033077 "T cell
differentiation in thymus" evidence=IEA] [GO:0032807 "DNA ligase IV
complex" evidence=IEA] [GO:0010332 "response to gamma radiation"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0008283 "cell proliferation" evidence=IEA] [GO:0008022 "protein
C-terminus binding" evidence=IEA] [GO:0007417 "central nervous
system development" evidence=IEA] [GO:0006303 "double-strand break
repair via nonhomologous end joining" evidence=IEA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IEA]
[GO:0005958 "DNA-dependent protein kinase-DNA ligase 4 complex"
evidence=IEA] [GO:0005925 "focal adhesion" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0002328 "pro-B cell
differentiation" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000012 "single strand break repair"
evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 InterPro:IPR021536 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 Pfam:PF11411 PROSITE:PS00333 PROSITE:PS00697
PROSITE:PS50160 InterPro:IPR001357 Pfam:PF00533 GO:GO:0005886
GO:GO:0005524 GO:GO:0005737 GO:GO:0003677 GO:GO:0008283
GO:GO:0006260 GO:GO:0001701 GO:GO:0051402 GO:GO:0007417
GO:GO:0043524 GO:GO:0005925 GO:GO:0010332 GO:GO:0050769
GO:GO:0033077 GO:GO:0035019 GO:GO:0045190 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0000793 GO:GO:0048146
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0010165
GO:GO:0051276 GO:GO:0000012 GO:GO:0005958 GO:GO:0006303
GO:GO:0033153 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 GO:GO:0006297 KO:K10777
OMA:HMCPSTK GO:GO:0032807 CTD:3981 GO:GO:0051102 GO:GO:0033152
GO:GO:0002328 GeneTree:ENSGT00700000104500 EMBL:DAAA02034872
IPI:IPI00716207 RefSeq:NP_001178055.1 UniGene:Bt.7959
ProteinModelPortal:F1MB07 PRIDE:F1MB07 Ensembl:ENSBTAT00000021092
GeneID:781252 KEGG:bta:781252 NextBio:20924713 Uniprot:F1MB07
Length = 911
Score = 172 (65.6 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
Identities = 72/265 (27%), Positives = 119/265 (44%)
Query: 921 AVEAYNXXXXXXXXXXXXMNKGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKA 980
A E +N + +G S ++++ KPMLA I + + ++ K ++++
Sbjct: 211 AAELHNVTTDLEKVCRQLHDPSVGLSDISITLFSA--FKPMLAAIAD-IERIEKDMKHQS 267
Query: 981 FTCEYKYDGQRAQIHKLVDGTV-RIFSRNGDETTSRF---PD---LISIINEFCKPAAGT 1033
F E K DG+R Q+HK DG V R FSRNG +F P L I+ K
Sbjct: 268 FYIETKLDGERMQMHK--DGDVYRYFSRNGYNYVDQFGASPQEGSLTPFIHNAFKTEVLN 325
Query: 1034 FILDAEVVAIDRKNGCKIMSFQELSSRERGGK-DSVITIKSVKVDICVFVFDIMFANGEQ 1092
ILD E++A + +F + +G K D ++ ++ C VFD++ N ++
Sbjct: 326 CILDGEMMAYNPNT----QTFMQ-----KGNKFDIKRMVEDSELQTCYCVFDVLMVNDKK 376
Query: 1093 LLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSS 1152
L TLR+R + L +F G + ++ T + ++ + L EA+
Sbjct: 377 LGHETLRKRYEILNSVFTPVP-GRIEIVQK----------TQAHTKKEVIDALNEAIDKR 425
Query: 1153 CEGIIVKS-LDVDAGYSPSKRSDSW 1176
EGI+VK L + Y P KR + W
Sbjct: 426 EEGIMVKHPLSI---YKPDKRGEGW 447
Score = 63 (27.2 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
Identities = 14/47 (29%), Positives = 29/47 (61%)
Query: 843 SGSTARKKSL----IVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTI 885
S ++A++K L ++ L+ E K+L+R +V++L++G +TI
Sbjct: 157 SNNSAKRKDLMKKSVLQLITQSSALEQKWLIRMIVKDLKLGFSQQTI 203
>UNIPROTKB|P49916 [details] [associations]
symbol:LIG3 "DNA ligase 3" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0051103 "DNA ligation involved in DNA
repair" evidence=IEA] [GO:0051301 "cell division" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000795 "synaptonemal
complex" evidence=IEA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IEA] [GO:0043504 "mitochondrial
DNA repair" evidence=IEA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IEA] [GO:0003909 "DNA ligase activity"
evidence=IDA] [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0005739 "mitochondrion"
evidence=IBA] [GO:0006273 "lagging strand elongation" evidence=IBA]
[GO:0006289 "nucleotide-excision repair" evidence=IBA] [GO:0005515
"protein binding" evidence=IPI] [GO:0033151 "V(D)J recombination"
evidence=IDA] [GO:0007131 "reciprocal meiotic recombination"
evidence=TAS] [GO:0007283 "spermatogenesis" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair"
evidence=TAS] [GO:0006284 "base-excision repair" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] Reactome:REACT_216
InterPro:IPR000977 InterPro:IPR001510 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF00645 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00347 PROSITE:PS00697 PROSITE:PS50064 PROSITE:PS50160
InterPro:IPR001357 GO:GO:0005524 GO:GO:0005694 GO:GO:0005654
GO:GO:0051301 GO:GO:0046872 GO:GO:0006284 GO:GO:0003677
GO:GO:0008270 GO:GO:0007283 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
EMBL:CH471147 GO:GO:0007131 GO:GO:0006289 DrugBank:DB00290
GO:GO:0006273 eggNOG:COG1793 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574 KO:K10776
EMBL:X84740 EMBL:U40671 EMBL:AF491645 EMBL:AC004223 EMBL:AC022903
EMBL:BC068005 IPI:IPI00000156 IPI:IPI00029081 PIR:I37292
RefSeq:NP_002302.2 RefSeq:NP_039269.2 UniGene:Hs.100299 PDB:1IMO
PDB:1IN1 PDB:1UW0 PDB:3L2P PDB:3PC7 PDB:3PC8 PDB:3QVG PDBsum:1IMO
PDBsum:1IN1 PDBsum:1UW0 PDBsum:3L2P PDBsum:3PC7 PDBsum:3PC8
PDBsum:3QVG ProteinModelPortal:P49916 SMR:P49916 IntAct:P49916
MINT:MINT-4531178 STRING:P49916 PhosphoSite:P49916 DMDM:251757259
PaxDb:P49916 PRIDE:P49916 DNASU:3980 Ensembl:ENST00000262327
Ensembl:ENST00000378526 GeneID:3980 KEGG:hsa:3980 UCSC:uc002hik.2
CTD:3980 GeneCards:GC17P033307 HGNC:HGNC:6600 HPA:HPA006723
MIM:600940 neXtProt:NX_P49916 PharmGKB:PA30374 HOGENOM:HOG000007653
HOVERGEN:HBG005515 InParanoid:P49916 OMA:WSETDLL OrthoDB:EOG44BB1K
BRENDA:6.5.1.1 ChiTaRS:LIG3 EvolutionaryTrace:P49916
GenomeRNAi:3980 NextBio:15598 ArrayExpress:P49916 Bgee:P49916
CleanEx:HS_LIG3 Genevestigator:P49916 GermOnline:ENSG00000005156
Gene3D:3.30.1740.10 Uniprot:P49916
Length = 1009
Score = 183 (69.5 bits), Expect = 7.0e-10, Sum P(2) = 7.0e-10
Identities = 66/220 (30%), Positives = 101/220 (45%)
Query: 957 PIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRF 1016
P++PMLA+ V +K N F+ E KYDG+R Q+HK D FSR+
Sbjct: 480 PVQPMLAEACKSVEYAMKKCPNGMFS-EIKYDGERVQVHKNGDH-FSYFSRSLKPV---L 534
Query: 1017 PDLISIINEFCK---PAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKS 1073
P ++ ++ P + ILD+EV+ ID K G K + F L ++
Sbjct: 535 PHKVAHFKDYIPQAFPGGHSMILDSEVLLIDNKTG-KPLPFGTLGVHKKAAFQDA----- 588
Query: 1074 VKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYD-EKMGYFQYAKEMTVEGDDNCL 1132
++C+FVFD ++ N L+ L +RRK+L D + F K +T D
Sbjct: 589 ---NVCLFVFDCIYFNDVSLMDRPLCERRKFLHDNMVEIPNRIMFSEMKRVTKALD---- 641
Query: 1133 TSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKR 1172
+D+ I ++E L EG+++K DV Y P KR
Sbjct: 642 LADM----ITRVIQEGL----EGLVLK--DVKGTYEPGKR 671
Score = 52 (23.4 bits), Expect = 7.0e-10, Sum P(2) = 7.0e-10
Identities = 25/99 (25%), Positives = 36/99 (36%)
Query: 488 AVSNFYEHETQLYEQEYKLPTIKHSIKSTLSPSKRKKTVTNNPKKKGKVPSKMESSGAKQ 547
A + E T+L E K I ++ K T PKKK V +K+ ++G
Sbjct: 152 ATTKKIEDLTELEGWEELEDNEKEQITQHIADLSSKAAGT--PKKKAVVQAKLTTTGQVT 209
Query: 548 PTI--TSFFNKLLPNMSQG-DVVESKSEECPKDENPLQS 583
+ SF P G + S E P P +S
Sbjct: 210 SPVKGASFVTSTNPRKFSGFSAKPNNSGEAPSSPTPKRS 248
Score = 43 (20.2 bits), Expect = 5.9e-09, Sum P(2) = 5.9e-09
Identities = 21/81 (25%), Positives = 33/81 (40%)
Query: 444 KDVTALDDEETEKMVQEIRNCLPTWVTQNQILDLISSSGRNIVDAVSNFYEHETQLYEQE 503
K V L+D++ K+ I NC P + DL G ++ + + F+E
Sbjct: 316 KTVYNLNDKQIVKLFSRIFNCNP----DDMARDL--EQG-DVSETIRVFFEQSKSFPPAA 368
Query: 504 YKLPTIKHSIKSTLSPSKRKK 524
L TI+ + L SK K
Sbjct: 369 KSLLTIQEVDEFLLRLSKLTK 389
>TAIR|locus:505006131 [details] [associations]
symbol:AT1G19025 "AT1G19025" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002684 KO:K15340 InterPro:IPR011084
Pfam:PF07522 IPI:IPI00546684 RefSeq:NP_564070.1 UniGene:At.41767
UniGene:At.74256 ProteinModelPortal:F4IDZ7 SMR:F4IDZ7
EnsemblPlants:AT1G19025.1 GeneID:838484 KEGG:ath:AT1G19025
OMA:IRPSAQW Uniprot:F4IDZ7
Length = 549
Score = 157 (60.3 bits), Expect = 7.9e-10, Sum P(3) = 7.9e-10
Identities = 67/243 (27%), Positives = 104/243 (42%)
Query: 64 YFLSHFHSDHYTGLSPSWSKGI-IFCSEIT-SRLLSQILNINPKFIYPLPIKIPVLIDGC 121
+FL+H H DH G+SPS I+ + +T S LL + ++ + + I V++D
Sbjct: 29 HFLTHAHKDHTVGVSPSNIVVFPIYSTSLTISLLLQRFPQLDESYFVRVEIGQSVIVDDP 88
Query: 122 E----VVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRF---CKTMLLQPVMNEFAG 174
+ V ANHCPGAV FLF+ G F +HTGD R C L + + G
Sbjct: 89 DGEFKVTAFDANHCPGAVMFLFE-----GSFGNILHTGDCRLTLDCLHSLPEKYVGRSHG 143
Query: 175 ----CDA--VFLDTTYCNPKFL--FPLQXXXXXXXXXXXXXXXXXXXXXLQKRVLFLVAT 226
C +FLD T+ FP + V++L A
Sbjct: 144 MKPKCSLGYIFLDCTFGKSSHSQRFPTKHSAIRQIINCIWNHPDAP-------VVYL-AC 195
Query: 227 YVIGKEKILIEIFKKCGRKVCVD-SRKMEVLRVLGYGDSGVFTEDESETDVHVVGWNEIM 285
++G+E +L+E+ + G K+ VD + +E R L + +ED S H+ +
Sbjct: 196 DMLGQEDVLLEVSRTFGSKIYVDKATNLECFRSLMVIVPEIVSEDPSSR-FHIFSGFPKL 254
Query: 286 VER 288
ER
Sbjct: 255 YER 257
Score = 73 (30.8 bits), Expect = 7.9e-10, Sum P(3) = 7.9e-10
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 299 TGWTYEVKRNKFAVRSKDAFEIHLVPYSEHSNYDELREYVKFLKPKRVIPTV 350
+G + ++ +F+ KD F + V YS HS+ EL ++ L PK V+ TV
Sbjct: 293 SGSIQKQRKVRFSEAVKDEFGLWHVCYSMHSSRAELESAMQLLSPKWVVSTV 344
Score = 42 (19.8 bits), Expect = 7.9e-10, Sum P(3) = 7.9e-10
Identities = 8/32 (25%), Positives = 21/32 (65%)
Query: 724 LVEAERGKIKAMSMLCNMFRSLLALSPDDVLP 755
++++ + K++ + + + LL+LSP++ LP
Sbjct: 403 ILDSGKSKLEPVIESSSTKKKLLSLSPENSLP 434
>DICTYBASE|DDB_G0292760 [details] [associations]
symbol:lig4 "BRCT domain-containing protein"
species:44689 "Dictyostelium discoideum" [GO:0005958 "DNA-dependent
protein kinase-DNA ligase 4 complex" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA;ISS] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IEA;ISS;IBA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0000012 "single strand break repair" evidence=ISS] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0032807 "DNA ligase IV
complex" evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IBA] [GO:0006289
"nucleotide-excision repair" evidence=IBA] [GO:0006273 "lagging
strand elongation" evidence=IBA] [GO:0006266 "DNA ligation"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016874 "ligase activity"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR021536 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 Pfam:PF11411 PROSITE:PS50160 InterPro:IPR001357
dictyBase:DDB_G0292760 Pfam:PF00533 GO:GO:0005524 GO:GO:0005694
GenomeReviews:CM000155_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0000012 GO:GO:0005958
GO:GO:0006303 GO:GO:0006289 EMBL:AAFI02000196 GO:GO:0006273
eggNOG:COG1793 GO:GO:0003910 Gene3D:1.10.3260.10 TIGRFAMs:TIGR00574
KO:K10777 OMA:HMCPSTK GO:GO:0032807 HSSP:Q08387 RefSeq:XP_629472.1
ProteinModelPortal:Q54CR9 EnsemblProtists:DDB0232255 GeneID:8628862
KEGG:ddi:DDB_G0292760 ProtClustDB:CLSZ2728715 Uniprot:Q54CR9
Length = 1088
Score = 189 (71.6 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 69/229 (30%), Positives = 111/229 (48%)
Query: 957 PIKPMLA--KITNGVPQVLK-LFQNKAFTCEYKYDGQRAQIHKLVDGT-VRIFSRNGDET 1012
PIKPMLA + + + +L F E K+DG+R QIHK DG V+ FSRN +++
Sbjct: 384 PIKPMLANRQSIDNLSMILNSAISATQFVVEKKFDGERIQIHK--DGEQVKYFSRNSNDS 441
Query: 1013 TSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSS---RERG--GKDS 1067
T + + + I + C A ILD E++ D + + F L + + G G
Sbjct: 442 TGIYGSMFTPIVKECV-LAERCILDGELIVWDSISQ-RFEDFGNLKTLALNKDGISGSGD 499
Query: 1068 VITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEG 1127
+ I K +C FDI+F + ++ L QR LK K F+ +++ TV
Sbjct: 500 PLGINYGK-QLCFIAFDILFVKDQSVMNLPLMQRLMLLKRCV-TIKSKQFEISEQTTVN- 556
Query: 1128 DDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
S+S+I + LE A+ + EG+++K+L + Y P++R D W
Sbjct: 557 ---------SISQIISLLESAIINREEGLMLKNLH--SLYVPAERKDKW 594
Score = 44 (20.5 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 623 MALDLYYDNQEGDRGKTVNR 642
MAL LYYD ++ D + N+
Sbjct: 1 MALSLYYD-EDDDENENENK 19
Score = 37 (18.1 bits), Expect = 6.9e-09, Sum P(2) = 6.9e-09
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 9 NLTLDSTHLFLSTQS 23
NL L T+LF TQS
Sbjct: 330 NLRLVCTNLFYMTQS 344
>UNIPROTKB|F1P394 [details] [associations]
symbol:LIG3 "DNA ligase" species:9031 "Gallus gallus"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0051103 "DNA ligation involved in DNA
repair" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0003910 "DNA ligase (ATP)
activity" evidence=IEA] [GO:0000795 "synaptonemal complex"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IEA] [GO:0043504 "mitochondrial DNA repair" evidence=IEA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IEA] InterPro:IPR000977 InterPro:IPR001510
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF00645 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00347 PROSITE:PS00697
PROSITE:PS50064 PROSITE:PS50160 InterPro:IPR001357 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 GO:GO:0008270
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 OMA:WSETDLL Gene3D:3.30.1740.10
GeneTree:ENSGT00700000104500 EMBL:AADN02025943 IPI:IPI00586176
Ensembl:ENSGALT00000003599 Uniprot:F1P394
Length = 900
Score = 183 (69.5 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 67/229 (29%), Positives = 105/229 (45%)
Query: 949 TLSMVPGV--PIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFS 1006
TLS+ + P++PMLA+ + +K N + E KYDG+R Q+HK D FS
Sbjct: 381 TLSVQASLMTPVQPMLAEACKSIEYAMKKCPNGMYA-EIKYDGERVQVHKNGDH-FSYFS 438
Query: 1007 RNGDETTSRFPDLISIINEFCK---PAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERG 1063
R+ P ++ +F P + ILD+EV+ ID K G K + F L ++
Sbjct: 439 RSLKPV---LPHKVAHFKDFIPQAFPGGHSMILDSEVLLIDNKTG-KPLPFGSLGVHKKA 494
Query: 1064 GKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEM 1123
++C+FVFD ++ N L+ LR+RRK+L D +
Sbjct: 495 AFQDA--------NVCLFVFDCIYFNDISLMDRPLRERRKFLHDNMVE--------IPPD 538
Query: 1124 TVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKR 1172
V GD+ S S + ++ + E L EG+++K D+ Y P KR
Sbjct: 539 PVLGDEARHKSFRS-GRYDHVIREGL----EGLVLK--DIKGNYEPGKR 580
Score = 46 (21.3 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 18/65 (27%), Positives = 28/65 (43%)
Query: 510 KHSIKSTLSPSKRKKTVTNNPKKKGKVPSKMESSGA-KQPTITSFFNKLLPNMSQGDVVE 568
K I + +S + K T PKKK V +K+ ++G P N + P G +
Sbjct: 87 KELITNFISEATSKAAST--PKKKATVQAKLTATGQISSPQKDPLAN-VNPKKFSGFTAK 143
Query: 569 SKSEE 573
K+ E
Sbjct: 144 PKNSE 148
Score = 37 (18.1 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 19/81 (23%), Positives = 33/81 (40%)
Query: 444 KDVTALDDEETEKMVQEIRNCLPTWVTQNQILDLISSSGRNIVDAVSNFYEHETQLYEQE 503
K V L+D++ K+ I NC + + DL G ++ + + F+E
Sbjct: 227 KIVYNLNDKQIVKLFSRIFNCSQ----EEMVRDL--EQG-DVSETIRLFFEQSKSCPPAA 279
Query: 504 YKLPTIKHSIKSTLSPSKRKK 524
L TI+ + + SK K
Sbjct: 280 KSLLTIQEVDEFLIQLSKLTK 300
>UNIPROTKB|E2R0G7 [details] [associations]
symbol:LIG4 "DNA ligase" species:9615 "Canis lupus
familiaris" [GO:0051402 "neuron apoptotic process" evidence=IEA]
[GO:0051276 "chromosome organization" evidence=IEA] [GO:0051103
"DNA ligation involved in DNA repair" evidence=IEA] [GO:0051102
"DNA ligation involved in DNA recombination" evidence=IEA]
[GO:0050769 "positive regulation of neurogenesis" evidence=IEA]
[GO:0048146 "positive regulation of fibroblast proliferation"
evidence=IEA] [GO:0045190 "isotype switching" evidence=IEA]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA] [GO:0035019 "somatic stem cell maintenance"
evidence=IEA] [GO:0033153 "T cell receptor V(D)J recombination"
evidence=IEA] [GO:0033152 "immunoglobulin V(D)J recombination"
evidence=IEA] [GO:0033077 "T cell differentiation in thymus"
evidence=IEA] [GO:0032807 "DNA ligase IV complex" evidence=IEA]
[GO:0010332 "response to gamma radiation" evidence=IEA] [GO:0010165
"response to X-ray" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007417 "central nervous system development"
evidence=IEA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IEA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IEA]
[GO:0005958 "DNA-dependent protein kinase-DNA ligase 4 complex"
evidence=IEA] [GO:0005925 "focal adhesion" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0002328 "pro-B cell
differentiation" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000012 "single strand break repair"
evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 InterPro:IPR021536 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 Pfam:PF11411 PROSITE:PS00333 PROSITE:PS00697
PROSITE:PS50160 InterPro:IPR001357 Pfam:PF00533 GO:GO:0005886
GO:GO:0005524 GO:GO:0005737 GO:GO:0003677 GO:GO:0008283
GO:GO:0006260 GO:GO:0001701 GO:GO:0051402 GO:GO:0007417
GO:GO:0043524 GO:GO:0005925 GO:GO:0010332 GO:GO:0050769
GO:GO:0033077 GO:GO:0035019 GO:GO:0045190 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0000793 GO:GO:0048146
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0010165
GO:GO:0051276 GO:GO:0000012 GO:GO:0005958 GO:GO:0006303
GO:GO:0033153 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 GO:GO:0006297 KO:K10777
OMA:HMCPSTK GO:GO:0032807 CTD:3981 GO:GO:0051102 GO:GO:0033152
GO:GO:0002328 GeneTree:ENSGT00700000104500 EMBL:AAEX03013370
RefSeq:XP_542663.2 ProteinModelPortal:E2R0G7
Ensembl:ENSCAFT00000009725 GeneID:485544 KEGG:cfa:485544
NextBio:20859524 Uniprot:E2R0G7
Length = 911
Score = 176 (67.0 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 83/309 (26%), Positives = 140/309 (45%)
Query: 885 ILPALAQAVVMNSSLEFSHEGKM--ENLKEKL--QSLSAA----AVEAYNXXXXXXXXXX 936
I +L Q + +S+LE +M ++LK QS+ +A A E +N
Sbjct: 167 IKKSLLQLITQSSALEQKWLIRMIVKDLKLGFSEQSVFSAFHNDAAELHNVTTDLEKVCR 226
Query: 937 XXMNKGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHK 996
+ IG S ++++ KPMLA I + + ++ K ++++F E K DG+R Q+HK
Sbjct: 227 QLHDPSIGLSDISITLFSA--FKPMLAAIAD-IERIEKDMKHQSFYIETKLDGERMQMHK 283
Query: 997 LVDGTV-RIFSRNGDETTSRFPD------LISIINEFCKPAAGTFILDAEVVAIDRKNGC 1049
DG V + FSRNG T +F D L I+ K ILD E++A +
Sbjct: 284 --DGDVYQYFSRNGYNYTDQFGDSPREGSLTPFIHSAFKTDVQICILDGEMMAFNPNT-- 339
Query: 1050 KIMSFQELSSRERGGK-DSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDL 1108
+F + +G K D ++ + C VFD++ N ++L TL++R + L +
Sbjct: 340 --QTFMQ-----KGNKFDIKRMVEDSDLQTCYCVFDVLMVNNKKLGRETLKKRYEILTSV 392
Query: 1109 FYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKS-LDVDAGY 1167
F G + ++ T + ++ + L EA+ EGI++K L + Y
Sbjct: 393 FTPIP-GRIEIVQK----------TQAHTKKEVIDALNEAIDKREEGIMIKHPLSI---Y 438
Query: 1168 SPSKRSDSW 1176
P KR + W
Sbjct: 439 KPDKRGEGW 447
>MGI|MGI:1335098 [details] [associations]
symbol:Lig4 "ligase IV, DNA, ATP-dependent" species:10090
"Mus musculus" [GO:0000012 "single strand break repair"
evidence=ISO] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=ISO] [GO:0001701 "in
utero embryonic development" evidence=IMP] [GO:0002328 "pro-B cell
differentiation" evidence=IMP] [GO:0003677 "DNA binding"
evidence=ISO] [GO:0003909 "DNA ligase activity" evidence=ISO]
[GO:0003910 "DNA ligase (ATP) activity" evidence=ISO;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=ISO;IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005694 "chromosome" evidence=IBA] [GO:0005958 "DNA-dependent
protein kinase-DNA ligase 4 complex" evidence=ISO;IDA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0006266 "DNA ligation"
evidence=ISO;IMP;IDA] [GO:0006273 "lagging strand elongation"
evidence=IBA] [GO:0006281 "DNA repair" evidence=IMP] [GO:0006289
"nucleotide-excision repair" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=ISO]
[GO:0006302 "double-strand break repair" evidence=ISO;IGI;IMP]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=ISO;IMP] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007417
"central nervous system development" evidence=IGI;IMP] [GO:0008022
"protein C-terminus binding" evidence=ISO] [GO:0008283 "cell
proliferation" evidence=IMP] [GO:0010165 "response to X-ray"
evidence=ISO] [GO:0010212 "response to ionizing radiation"
evidence=IMP] [GO:0010332 "response to gamma radiation"
evidence=IMP] [GO:0016874 "ligase activity" evidence=ISO]
[GO:0032807 "DNA ligase IV complex" evidence=ISO;IBA] [GO:0033077
"T cell differentiation in thymus" evidence=IMP] [GO:0033151 "V(D)J
recombination" evidence=ISO;IMP;IDA] [GO:0033152 "immunoglobulin
V(D)J recombination" evidence=IMP] [GO:0033153 "T cell receptor
V(D)J recombination" evidence=IMP] [GO:0035019 "somatic stem cell
maintenance" evidence=IMP] [GO:0043524 "negative regulation of
neuron apoptotic process" evidence=IGI;IMP] [GO:0045190 "isotype
switching" evidence=IMP] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0048146 "positive regulation of fibroblast
proliferation" evidence=IMP] [GO:0050769 "positive regulation of
neurogenesis" evidence=IMP] [GO:0051102 "DNA ligation involved in
DNA recombination" evidence=IMP] [GO:0051103 "DNA ligation involved
in DNA repair" evidence=ISO;IMP] [GO:0051276 "chromosome
organization" evidence=IGI] [GO:0051301 "cell division"
evidence=IEA] [GO:0051402 "neuron apoptotic process" evidence=IGI]
[GO:0070419 "nonhomologous end joining complex" evidence=ISO]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 InterPro:IPR021536
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 Pfam:PF11411 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357 MGI:MGI:1335098
Pfam:PF00533 GO:GO:0005524 GO:GO:0005694 GO:GO:0051301
GO:GO:0046872 GO:GO:0003677 GO:GO:0008283 GO:GO:0001701
GO:GO:0051402 GO:GO:0007417 GO:GO:0043524 GO:GO:0010332
GO:GO:0007049 GO:GO:0050769 GO:GO:0033077 GO:GO:0035019
GO:GO:0045190 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0048146 EMBL:CH466566 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 GO:GO:0051276 GO:GO:0005958 GO:GO:0006303
GO:GO:0006289 GO:GO:0033153 GO:GO:0006273 eggNOG:COG1793
GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 KO:K10777 OMA:HMCPSTK GO:GO:0032807 CTD:3981
HOGENOM:HOG000007831 HOVERGEN:HBG005516 OrthoDB:EOG4Q58NP
GO:GO:0051102 GO:GO:0033152 GO:GO:0002328 EMBL:AK030029
EMBL:AK148081 EMBL:AC138397 IPI:IPI00225019 RefSeq:NP_795927.2
UniGene:Mm.80584 ProteinModelPortal:Q8BTF7 STRING:Q8BTF7
PhosphoSite:Q8BTF7 PRIDE:Q8BTF7 Ensembl:ENSMUST00000095476
Ensembl:ENSMUST00000170033 GeneID:319583 KEGG:mmu:319583
UCSC:uc009kul.1 GeneTree:ENSGT00700000104500 InParanoid:Q8BTF7
NextBio:395028 CleanEx:MM_LIG4 Genevestigator:Q8BTF7
GermOnline:ENSMUSG00000049717 Uniprot:Q8BTF7
Length = 911
Score = 171 (65.3 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 83/320 (25%), Positives = 146/320 (45%)
Query: 872 LVRNLRIGAMMRTILPALAQAVVMNSSLEFSHEGKM--ENLKEKL--QSLSAA----AVE 923
LV + G + +L Q + +S+LE +M ++LK + Q++ + AVE
Sbjct: 154 LVASNNSGKKKDLVKKSLLQLITQSSALEQKWLIRMIIKDLKLGISQQTIFSIFHNDAVE 213
Query: 924 AYNXXXXXXXXXXXXMNKGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTC 983
+N + +G S ++++ KPMLA + + V +V K + ++F
Sbjct: 214 LHNVTTDLEKVCRQLHDPSVGLSDISITLFSA--FKPMLAAVAD-VERVEKDMKQQSFYI 270
Query: 984 EYKYDGQRAQIHKLVDGTV-RIFSRNGDETTSRFPDLIS--IINEFCKPAAGTFILDAEV 1040
E K DG+R Q+HK DG + R FSRNG T +F + + F A GT D +
Sbjct: 271 ETKLDGERMQMHK--DGALYRYFSRNGYNYTDQFGESPQEGSLTPFIHNAFGT---DVQA 325
Query: 1041 VAIDRKNGCKIMSFQELSSR--ERGGK-DSVITIKSVKVDICVFVFDIMFANGEQLLGYT 1097
+D G ++M++ + ++G K D ++ + C VFD++ N ++L T
Sbjct: 326 CILD---G-EMMAYNPTTQTFMQKGVKFDIKRMVEDSGLQTCYSVFDVLMVNKKKLGRET 381
Query: 1098 LRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGII 1157
LR+R + L F + G + ++ T + ++ + L +A+ EGI+
Sbjct: 382 LRKRYEILSSTFTPIQ-GRIEIVQK----------TQAHTKKEVVDALNDAIDKREEGIM 430
Query: 1158 VKS-LDVDAGYSPSKRSDSW 1176
VK L + Y P KR + W
Sbjct: 431 VKHPLSI---YKPDKRGEGW 447
>FB|FBgn0038035 [details] [associations]
symbol:lig3 "DNA ligase III" species:7227 "Drosophila
melanogaster" [GO:0003910 "DNA ligase (ATP) activity"
evidence=ISS;IBA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0051103 "DNA
ligation involved in DNA repair" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0006289 "nucleotide-excision repair" evidence=IBA] [GO:0005739
"mitochondrion" evidence=IBA] [GO:0006266 "DNA ligation"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0006273
"lagging strand elongation" evidence=IBA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357
EMBL:AE014297 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0003677 GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0006289 GO:GO:0006273 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574 KO:K10776
CTD:3980 GeneTree:ENSGT00700000104500 FlyBase:FBgn0038035
EMBL:BT120103 RefSeq:NP_650187.2 UniGene:Dm.13380 SMR:Q9VG84
IntAct:Q9VG84 MINT:MINT-1007361 STRING:Q9VG84
EnsemblMetazoa:FBtr0082600 GeneID:41518 KEGG:dme:Dmel_CG17227
InParanoid:Q9VG84 OMA:NEDNKLD GenomeRNAi:41518 NextBio:824218
Uniprot:Q9VG84
Length = 806
Score = 174 (66.3 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 64/229 (27%), Positives = 101/229 (44%)
Query: 946 SASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIF 1005
S+S + ++ PI PMLA V K ++ E KYDG+R QIHK + F
Sbjct: 245 SSSAIQVM--TPISPMLASPCKSVEDAFKKSPTGLYS-EIKYDGERVQIHKQ-GNDFKFF 300
Query: 1006 SRNGDETTS-RFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGG 1064
SRN + L I + P G ILD+E++ +D G ++ F L + ++
Sbjct: 301 SRNLKPVVDHKIRALKKYIPQ-AFPGGGEMILDSEIILVDTDTGA-LLPFGSLGAHKKQ- 357
Query: 1065 KDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMT 1124
T + V C+FVFD + +GE L R+RR+ L+ Q K
Sbjct: 358 -----TFANAAV--CLFVFDCILYDGEDLTQLPFRKRREILEQ--------NIQPIKSHV 402
Query: 1125 VEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRS 1173
+ L + L+ + LH++ EG+++KS + Y P KR+
Sbjct: 403 QLSESEFLKTTRELAAMT---ARVLHANLEGVVLKS--PTSTYQPGKRN 446
Score = 47 (21.6 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 15/62 (24%), Positives = 29/62 (46%)
Query: 827 IKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTIL 886
+++V ML + +T + L+ L + +++ +R + +LRI A R IL
Sbjct: 145 LQEVEEMLLHLVERTKEDE---QTDLLQKLCSKATDLDLRTFIRLVKHDLRINARARHIL 201
Query: 887 PA 888
A
Sbjct: 202 DA 203
Score = 39 (18.8 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
Identities = 10/47 (21%), Positives = 24/47 (51%)
Query: 643 LEFSKSSVQSDSCNKDCSSALEKIVSEELQHIT-DMSVQRPSKELMD 688
+E +K Q+D K CS A + + ++ + D+ + ++ ++D
Sbjct: 156 VERTKEDEQTDLLQKLCSKATDLDLRTFIRLVKHDLRINARARHILD 202
Score = 38 (18.4 bits), Expect = 9.6e-08, Sum P(2) = 9.6e-08
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 607 KGYAATLLEKTKGNVSMALDL 627
K YA++ ++KTK S A+ +
Sbjct: 231 KNYASSPVKKTKKTSSSAIQV 251
>MGI|MGI:2441769 [details] [associations]
symbol:Dclre1c "DNA cross-link repair 1C, PSO2 homolog (S.
cerevisiae)" species:10090 "Mus musculus" [GO:0000014
"single-stranded DNA specific endodeoxyribonuclease activity"
evidence=ISO] [GO:0000723 "telomere maintenance" evidence=IMP]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006302 "double-strand
break repair" evidence=IMP] [GO:0006310 "DNA recombination"
evidence=IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=ISO] [GO:0010212 "response to ionizing radiation"
evidence=IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0030183 "B cell differentiation" evidence=IMP] [GO:0051276
"chromosome organization" evidence=IMP] InterPro:IPR001279
SMART:SM00849 MGI:MGI:2441769 GO:GO:0005634 GO:GO:0010212
GO:GO:0006310 GO:GO:0030183 GO:GO:0006302 GO:GO:0000723
EMBL:AL732620 eggNOG:COG1236 GO:GO:0000014 GO:GO:0008409
InterPro:IPR011084 Pfam:PF07522 GeneTree:ENSGT00530000063183
CTD:64421 HOGENOM:HOG000231568 HOVERGEN:HBG081421 KO:K10887
OrthoDB:EOG4894M0 OMA:MFRNMPD EMBL:AF387731 EMBL:AK037126
EMBL:AK052369 EMBL:AK088810 IPI:IPI00170222 IPI:IPI00221500
IPI:IPI00607937 RefSeq:NP_001103684.1 RefSeq:NP_666226.2
RefSeq:NP_783614.1 UniGene:Mm.23483 UniGene:Mm.442710
ProteinModelPortal:Q8K4J0 SMR:Q8K4J0 STRING:Q8K4J0
PhosphoSite:Q8K4J0 PRIDE:Q8K4J0 Ensembl:ENSMUST00000061852
Ensembl:ENSMUST00000102988 Ensembl:ENSMUST00000115066 GeneID:227525
KEGG:mmu:227525 UCSC:uc008idz.2 UCSC:uc008iea.2 UCSC:uc008ieb.2
InParanoid:A2AJG6 NextBio:378619 Bgee:Q8K4J0 Genevestigator:Q8K4J0
Uniprot:Q8K4J0
Length = 705
Score = 149 (57.5 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 75/310 (24%), Positives = 131/310 (42%)
Query: 83 KGIIFCSEITSRLL--SQILNINPKFIYPLPIKIPV---LIDGC-----EVV--LVGANH 130
K ++CS +T LL S I + I+ P L+D EVV L+ A H
Sbjct: 56 KVFLYCSPVTKELLLTSPKYRFWENRIITIEIETPTQISLVDEASGEKEEVVVTLLPAGH 115
Query: 131 CPGAVQFLFKVPGRNGGFERYVHTGDFRFCKTMLLQPVMNEFAG----CDAVFLDTTYCN 186
CPG+V FLF+ G NG ++TGDFR K + + G +V+LDTT+C+
Sbjct: 116 CPGSVMFLFQ--GSNG---TVLYTGDFRLAKGEASRMELLHSGGRVKDIQSVYLDTTFCD 170
Query: 187 PKFLFPLQXXXXXXXXXXXXXXXXXXXXXLQKRVLFLVATYVIGKEKILIEIFKKCGRKV 246
P+F Q V++L G E + + ++ G +V
Sbjct: 171 PRFY---QIPSREQCLRGILELVRSWVTRSPHHVVWLNCKAAYGYEYLFTNLSEELGVQV 227
Query: 247 CVDSRKMEVLRVLGYGDSGVFTEDESETDVHVVG---------WNEIMVE-RGYDKV--- 293
VD K+++ + + D + T +H WN++ +K
Sbjct: 228 HVD--KLDMFKNMP--DILHHLTTDRNTQIHACRHPKAEECFQWNKLPCGITSQNKTALH 283
Query: 294 -VGFVP-TGWTYE-VKRNKFAVRSKDAFEIHLVPYSEHSNYDELREYVKFLKPKRVIPTV 350
+ P T W E ++ VR+ ++ + +S HS++ E+++++ ++ P V P V
Sbjct: 284 TISIKPSTMWFGERTRKTNVIVRTGESS--YRACFSFHSSFSEIKDFLSYICPVNVYPNV 341
Query: 351 ---GMDIEKL 357
G+ ++K+
Sbjct: 342 IPVGLTVDKV 351
Score = 73 (30.8 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 63 SYFLSHFHSDHYTGL-SPSWSKGI-------IFCSEITSRLL 96
+YFLSH H DH GL +PS + + ++CS +T LL
Sbjct: 28 AYFLSHCHKDHMKGLRAPSLKRRLECSLKVFLYCSPVTKELL 69
Score = 43 (20.2 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 23/99 (23%), Positives = 42/99 (42%)
Query: 521 KRKKTVTNNPKKKGKVPSKMESSGAKQPTITSFFNKLLPNMSQGDVVESKSEECP-KDEN 579
KR+ +T + +PS +E+ G++ P + S KL + S +S + +N
Sbjct: 496 KRRDEITGECLEH--LPSSIETGGSQSPKLCSDSPKLCSD-SPKLCSDSDGDSTHISSQN 552
Query: 580 PLQSNAIKTYGEE--IDQFLKIINGNESLKGYAATLLEK 616
QS I G + Q ++ ++ G +T L K
Sbjct: 553 SSQSTHITDQGSQGWDSQCDTVLLSSQEKSGGDSTSLNK 591
>UNIPROTKB|F1RLP1 [details] [associations]
symbol:LIG4 "DNA ligase" species:9823 "Sus scrofa"
[GO:0051402 "neuron apoptotic process" evidence=IEA] [GO:0051276
"chromosome organization" evidence=IEA] [GO:0051103 "DNA ligation
involved in DNA repair" evidence=IEA] [GO:0051102 "DNA ligation
involved in DNA recombination" evidence=IEA] [GO:0050769 "positive
regulation of neurogenesis" evidence=IEA] [GO:0048146 "positive
regulation of fibroblast proliferation" evidence=IEA] [GO:0045190
"isotype switching" evidence=IEA] [GO:0043524 "negative regulation
of neuron apoptotic process" evidence=IEA] [GO:0035019 "somatic
stem cell maintenance" evidence=IEA] [GO:0033153 "T cell receptor
V(D)J recombination" evidence=IEA] [GO:0033152 "immunoglobulin
V(D)J recombination" evidence=IEA] [GO:0033077 "T cell
differentiation in thymus" evidence=IEA] [GO:0032807 "DNA ligase IV
complex" evidence=IEA] [GO:0010332 "response to gamma radiation"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0008283 "cell proliferation" evidence=IEA] [GO:0008022 "protein
C-terminus binding" evidence=IEA] [GO:0007417 "central nervous
system development" evidence=IEA] [GO:0006303 "double-strand break
repair via nonhomologous end joining" evidence=IEA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IEA]
[GO:0005958 "DNA-dependent protein kinase-DNA ligase 4 complex"
evidence=IEA] [GO:0005925 "focal adhesion" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0002328 "pro-B cell
differentiation" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000012 "single strand break repair"
evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 InterPro:IPR021536 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 Pfam:PF11411 PROSITE:PS00333 PROSITE:PS00697
PROSITE:PS50160 InterPro:IPR001357 Pfam:PF00533 GO:GO:0005886
GO:GO:0005524 GO:GO:0005737 GO:GO:0003677 GO:GO:0008283
GO:GO:0006260 GO:GO:0001701 GO:GO:0051402 GO:GO:0007417
GO:GO:0043524 GO:GO:0005925 GO:GO:0010332 GO:GO:0050769
GO:GO:0033077 GO:GO:0035019 GO:GO:0045190 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0000793 GO:GO:0048146
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0010165
GO:GO:0051276 GO:GO:0000012 GO:GO:0005958 GO:GO:0006303
GO:GO:0033153 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 GO:GO:0006297 KO:K10777
OMA:HMCPSTK GO:GO:0032807 GO:GO:0051102 GO:GO:0033152 GO:GO:0002328
GeneTree:ENSGT00700000104500 EMBL:CU019584 RefSeq:XP_003131137.2
ProteinModelPortal:F1RLP1 Ensembl:ENSSSCT00000010458
GeneID:100155891 KEGG:ssc:100155891 Uniprot:F1RLP1
Length = 910
Score = 156 (60.0 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 69/265 (26%), Positives = 116/265 (43%)
Query: 921 AVEAYNXXXXXXXXXXXXMNKGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKA 980
A E +N + +G S ++++ KPMLA I + + ++ K ++++
Sbjct: 211 AAELHNVTTDLEKVCRQLHDPSVGLSDISITLFSA--FKPMLAAIAD-IERIEKDMKHQS 267
Query: 981 FTCEYKYDGQRAQIHKLVDGTV-RIFSRNGDETTSRF---PD---LISIINEFCKPAAGT 1033
F E K DG+R Q+HK DG V + FSRNG +F P L I+ K
Sbjct: 268 FYIETKLDGERMQMHK--DGDVYQYFSRNGYNYGDQFGVSPQEGSLTPFIHGTFKTNVQN 325
Query: 1034 FILDAEVVAIDRKNGCKIMSFQELSSRERGGK-DSVITIKSVKVDICVFVFDIMFANGEQ 1092
ILD E++A + +F + +G K D ++ + C VFD++ N ++
Sbjct: 326 CILDGEMMAYNPNT----QTFMQ-----KGNKFDIKRMVEDSDLQTCYCVFDVLMVNSKK 376
Query: 1093 LLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSS 1152
L TL+ R + L +F G + + T + ++ + L EA+
Sbjct: 377 LGHETLKNRYEILSSVFTPIP-GRIEIVPK----------TQAHTKKEVIDALNEAIDKR 425
Query: 1153 CEGIIVK-SLDVDAGYSPSKRSDSW 1176
EGI++K L + Y P KR + W
Sbjct: 426 EEGIMIKYPLSI---YKPDKRGEGW 447
Score = 60 (26.2 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 13/47 (27%), Positives = 29/47 (61%)
Query: 843 SGSTARKKSLI----VNLMCSCREKEMKFLVRTLVRNLRIGAMMRTI 885
S ++A++K L+ + L+ E K+L+R ++++L++G +TI
Sbjct: 157 SNNSAKRKDLVKKSLLQLITQSSALEQKWLIRMILKDLKLGFSQQTI 203
>TAIR|locus:2175544 [details] [associations]
symbol:ATLIG4 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003909 "DNA ligase
activity" evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IEA;IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006266 "DNA ligation" evidence=IBA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0032807 "DNA ligase IV complex" evidence=IBA]
[GO:0051103 "DNA ligation involved in DNA repair" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0006974 "response
to DNA damage stimulus" evidence=IMP] [GO:0010165 "response to
X-ray" evidence=IMP] [GO:0015074 "DNA integration" evidence=IMP]
[GO:0000723 "telomere maintenance" evidence=IMP] [GO:0006302
"double-strand break repair" evidence=IMP] [GO:0009506
"plasmodesma" evidence=IDA] [GO:0048046 "apoplast" evidence=IDA]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160
InterPro:IPR001357 Pfam:PF00533 GO:GO:0009506 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0048046 GO:GO:0006260 EMBL:AB023042 GO:GO:0006310
GO:GO:0006302 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0010165
eggNOG:COG1793 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
TIGRFAMs:TIGR00574 EMBL:AF233527 IPI:IPI00524567 RefSeq:NP_568851.2
UniGene:At.49182 UniGene:At.69713 ProteinModelPortal:Q9LL84
SMR:Q9LL84 IntAct:Q9LL84 STRING:Q9LL84 PaxDb:Q9LL84 PRIDE:Q9LL84
EnsemblPlants:AT5G57160.1 GeneID:835822 KEGG:ath:AT5G57160
GeneFarm:4927 TAIR:At5g57160 HOGENOM:HOG000083793 InParanoid:Q9LL84
KO:K10777 OMA:HMCPSTK PhylomeDB:Q9LL84 ProtClustDB:CLSN2680547
Genevestigator:Q9LL84 GermOnline:AT5G57160 GO:GO:0032807
Uniprot:Q9LL84
Length = 1219
Score = 155 (59.6 bits), Expect = 7.4e-08, Sum P(2) = 7.4e-08
Identities = 61/233 (26%), Positives = 101/233 (43%)
Query: 955 GVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGT-VRIFSRN---GD 1010
G ++P LA V K K E K+DG R QIHK +GT + FSRN
Sbjct: 222 GKAVRPQLAMRIGDVNAAWKKLHGKDVVAECKFDGDRIQIHK--NGTDIHYFSRNFLDHS 279
Query: 1011 ETTSRFPDLI--SIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSV 1068
E DLI +I+ + C ILD E++ D + F E S + K +
Sbjct: 280 EYAHAMSDLIVQNILVDKC-------ILDGEMLVWDTS----LNRFAEFGSNQEIAKAAR 328
Query: 1069 ITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKE--MTVE 1126
+ S K +C FD+++ ++ +L++R + LK + K E + V
Sbjct: 329 EGLDSHK-QLCYVAFDVLYVGDTSVIHQSLKERHELLKKVVKPLKGRLEVLVPEGGLNVH 387
Query: 1127 ---GDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
G+ + + + + F +E + + EGI++K D+++ + P RS W
Sbjct: 388 RPSGEPSWSIVVHAAADVERFFKETVENRDEGIVLK--DLESKWEPGDRSGKW 438
Score = 63 (27.2 bits), Expect = 7.4e-08, Sum P(2) = 7.4e-08
Identities = 18/83 (21%), Positives = 43/83 (51%)
Query: 803 GDLGDVAQECRQTQXXXXXXXXXXIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCRE 862
G+ +A E Q + IK++ +L +++ S + A K ++ L+
Sbjct: 104 GNFSLIAAEVLQRRQGMASGGLT-IKELNDLLDRLA---SSENRAEKTLVLSTLIQKTNA 159
Query: 863 KEMKFLVRTLVRNLRIGAMMRTI 885
+EMK+++R ++++L++G ++I
Sbjct: 160 QEMKWVIRIILKDLKLGMSEKSI 182
>ZFIN|ZDB-GENE-030131-8453 [details] [associations]
symbol:lig3 "ligase III, DNA, ATP-dependent"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003909 "DNA ligase activity" evidence=IEA] [GO:0003910 "DNA
ligase (ATP) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0051103 "DNA ligation involved in DNA repair" evidence=IEA]
[GO:0016874 "ligase activity" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000977 InterPro:IPR001510
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF00645 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00347 PROSITE:PS00697
PROSITE:PS50064 PROSITE:PS50160 ZFIN:ZDB-GENE-030131-8453
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0008270
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG1793 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
TIGRFAMs:TIGR00574 CTD:3980 HOGENOM:HOG000007653 HOVERGEN:HBG005515
OrthoDB:EOG44BB1K Gene3D:3.30.1740.10 EMBL:BC098869 IPI:IPI00618829
RefSeq:NP_001025345.2 UniGene:Dr.107348 ProteinModelPortal:Q4KM23
SMR:Q4KM23 STRING:Q4KM23 GeneID:563276 InParanoid:Q4KM23
NextBio:20884821 Uniprot:Q4KM23
Length = 752
Score = 166 (63.5 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 66/221 (29%), Positives = 102/221 (46%)
Query: 957 PIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGT-VRIFSRNGDETTSR 1015
P++PMLA+ + +K N ++ E KYDG+R Q+HK +G FSR+
Sbjct: 393 PVQPMLAEACKSIEYAMKKCPNGMYS-EIKYDGERVQVHK--NGNHFSYFSRSLKPV--- 446
Query: 1016 FPDLISIINEFCKPA-AG--TFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIK 1072
P ++ +F A AG + ILDAEV+ ID K K + F L ++ +
Sbjct: 447 LPHKVAHFKDFIPQAFAGGHSMILDAEVLLIDTKTS-KPLPFGTLGVHKKAA------FQ 499
Query: 1073 SVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYD-EKMGYFQYAKEMTVEGDDNC 1131
+V + FVFD ++ NG L+ L +RRK+L D + F K +T
Sbjct: 500 DAQVGL--FVFDCIYFNGVSLMDKPLCERRKFLHDNMVEVPNRILFSEMKHVT------- 550
Query: 1132 LTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKR 1172
D++ I + E L EG+++K D+ Y P KR
Sbjct: 551 RAPDLA-EMITRVIREGL----EGLVLK--DIKGLYEPGKR 584
Score = 44 (20.5 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 19/75 (25%), Positives = 34/75 (45%)
Query: 444 KDVTALDDEETEKMVQEIRNCLPTWVTQNQILDLISSSGRNIVDAVSNFYEHETQLYEQE 503
K+V L+D++ K+ I NC + + DL G ++ + V F+E
Sbjct: 229 KNVYNLNDKQIVKLFSRILNCNQ----DDMVQDL--EQG-DVSETVRMFFEESKSFPPSA 281
Query: 504 YKLPTIKHSIKSTLS 518
L TI+ + ++LS
Sbjct: 282 KSLLTIQE-VDASLS 295
Score = 42 (19.8 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 14/68 (20%), Positives = 32/68 (47%)
Query: 556 KLLPNMSQGDVVESKSEECPKDENP---LQSNAIKTYGEEIDQFLKIINGNESLKGYAAT 612
K L + + D S+ + K+++ LQS A K G ++ +++++ + + A
Sbjct: 282 KSLLTIQEVDASLSRLSQLTKEDDQQAELQSIAKKCTGNDLKCYIRLVKHDLKINSGAKH 341
Query: 613 LLEKTKGN 620
+L+ N
Sbjct: 342 ILDAVDPN 349
>UNIPROTKB|E2RBE9 [details] [associations]
symbol:DCLRE1C "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0030183 "B cell differentiation"
evidence=IEA] [GO:0010212 "response to ionizing radiation"
evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0000723
"telomere maintenance" evidence=IEA] [GO:0000014 "single-stranded
DNA specific endodeoxyribonuclease activity" evidence=IEA]
InterPro:IPR001279 SMART:SM00849 GO:GO:0010212 GO:GO:0006310
GO:GO:0030183 GO:GO:0006302 GO:GO:0000723 GO:GO:0000014
GO:GO:0008409 InterPro:IPR011084 Pfam:PF07522
GeneTree:ENSGT00530000063183 CTD:64421 KO:K10887 OMA:MFRNMPD
EMBL:AAEX03001258 RefSeq:XP_544251.2 ProteinModelPortal:E2RBE9
Ensembl:ENSCAFT00000007553 GeneID:487123 KEGG:cfa:487123
NextBio:20860765 Uniprot:E2RBE9
Length = 693
Score = 156 (60.0 bits), Expect = 4.4e-06, Sum P(3) = 4.4e-06
Identities = 74/307 (24%), Positives = 129/307 (42%)
Query: 86 IFCSEITSRLL--SQILNINPKFIYPLPIKIPV---LIDGCE-------VVLVGANHCPG 133
++CS +T LL S K I + I+ P L+D V L+ A HCPG
Sbjct: 59 LYCSPVTKELLLTSPRYRFWEKRIISIEIETPTQIPLVDEASGEKEDIVVTLLPAGHCPG 118
Query: 134 AVQFLFKVPGRNGGFERYVHTGDFRFCKTMLLQPVMNEFAG----CDAVFLDTTYCNPKF 189
+V FLF+ G NG ++TGDFR K + + G +V+LDTT+C+PKF
Sbjct: 119 SVMFLFQ--GNNG---TVLYTGDFRMAKGEAARMELLHSGGRVKDIQSVYLDTTFCDPKF 173
Query: 190 LFPLQXXXXXXXXXXXXXXXXXXXXXLQKRVLFLVATYVIGKEKILIEIFKKCGRKVCVD 249
Q V++L G E + + ++ G ++ VD
Sbjct: 174 Y---QIPSREECLRGISELVRSWITRSPYHVVWLNCKAAYGYEYLFTNLSEEFGVQIHVD 230
Query: 250 SRKMEVLRVLGYGDSGVFTEDESETDVHVVG---------WNEI---MVERGYDKV--VG 295
K+++ R + D + T +H WN++ + + + +
Sbjct: 231 --KLDMFRNMP--DILHHLTTDRNTQIHACRHPKAEEYFHWNKLPCGAISKNRIPLHTIS 286
Query: 296 FVP-TGWTYE-VKRNKFAVRSKDAFEIHLVPYSEHSNYDELREYVKFLKPKRVIPTV--- 350
P T W E ++ VR+ ++ + +S HS+Y E+++++ ++ P V P V
Sbjct: 287 IKPSTMWFGERTRKTNVIVRTGESS--YRACFSFHSSYSEIKDFLNYICPVNVYPNVIPI 344
Query: 351 GMDIEKL 357
G ++K+
Sbjct: 345 GTTLDKV 351
Score = 42 (19.8 bits), Expect = 4.4e-06, Sum P(3) = 4.4e-06
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 885 ILPALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVE 923
++P++ + ++S E +M NL S S++ E
Sbjct: 615 VVPSVGERTALSSGKHIPQEKRMLNLSTNADSPSSSDFE 653
Score = 41 (19.5 bits), Expect = 4.4e-06, Sum P(3) = 4.4e-06
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 521 KRKKTVTNNPKKKGKVPSKMESSGAKQPTITS 552
KR +T++ + +PS E+ G++ P + S
Sbjct: 494 KRNDEITDDSLEN--LPSSTEAGGSQSPKLLS 523
>UNIPROTKB|Q9KXZ8 [details] [associations]
symbol:Q9KXZ8 "Probable ATP-dependent DNA ligase"
species:100226 "Streptomyces coelicolor A3(2)" [GO:0003910 "DNA
ligase (ATP) activity" evidence=IBA] [GO:0005694 "chromosome"
evidence=IBA] [GO:0006266 "DNA ligation" evidence=IBA] [GO:0006273
"lagging strand elongation" evidence=IBA] [GO:0006289
"nucleotide-excision repair" evidence=IBA] InterPro:IPR012309
InterPro:IPR012310 Pfam:PF01068 Pfam:PF04679 PROSITE:PS50160
GO:GO:0005524 GO:GO:0005694 GO:GO:0006310 GenomeReviews:AL645882_GR
EMBL:AL939131 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0006289 GO:GO:0006273 GO:GO:0003910 KO:K01971
HOGENOM:HOG000222509 RefSeq:NP_631399.1 ProteinModelPortal:Q9KXZ8
GeneID:1102783 KEGG:sco:SCO7345 PATRIC:23744613 OMA:VCKRLDS
ProtClustDB:CLSK2303611 Uniprot:Q9KXZ8
Length = 326
Score = 137 (53.3 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
Identities = 48/154 (31%), Positives = 74/154 (48%)
Query: 957 PIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRF 1016
PI PMLA T G + Q+ + E K DGQR ++ DG+V + +R+G + T+ +
Sbjct: 5 PIPPMLA--TPGT--LPPAGQDTRWAYETKQDGQRVVVYLPGDGSVLLRARSGQDITAAY 60
Query: 1017 PDLISIINEFCKPAAGT-FILDAEVVAIDRKNGCKIMSFQELSSRER-GGKDSVITIKSV 1074
P+L + GT +LD EV+A+D + FQ L SR + ++
Sbjct: 61 PELAPLATAL----GGTPAVLDGEVLALDEQGRA---DFQLLQSRMGLAHTPARAAHRAA 113
Query: 1075 KVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDL 1108
KV + + +FD + G LL RR+ L DL
Sbjct: 114 KVPVHLVLFDALHLAGRSLLRLPYTGRRERLTDL 147
Score = 47 (21.6 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 1154 EGIIVKSLDVDAGYSPSKRSDSW 1176
EG++ K LD + Y P RS +W
Sbjct: 177 EGLVCKRLD--SVYEPGVRSRAW 197
>UNIPROTKB|A6QLL4 [details] [associations]
symbol:DCLRE1C "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030183 "B cell differentiation" evidence=IEA]
[GO:0010212 "response to ionizing radiation" evidence=IEA]
[GO:0008409 "5'-3' exonuclease activity" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006302 "double-strand break
repair" evidence=IEA] [GO:0000723 "telomere maintenance"
evidence=IEA] [GO:0000014 "single-stranded DNA specific
endodeoxyribonuclease activity" evidence=IEA] InterPro:IPR001279
SMART:SM00849 GO:GO:0010212 GO:GO:0006310 GO:GO:0030183
GO:GO:0006302 GO:GO:0000723 eggNOG:COG1236 GO:GO:0000014
GO:GO:0008409 InterPro:IPR011084 Pfam:PF07522
GeneTree:ENSGT00530000063183 CTD:64421 HOGENOM:HOG000231568
HOVERGEN:HBG081421 KO:K10887 OrthoDB:EOG4894M0 OMA:MFRNMPD
EMBL:DAAA02035537 EMBL:DAAA02035538 EMBL:BC148006 IPI:IPI00701939
RefSeq:NP_001093847.1 UniGene:Bt.59419 STRING:A6QLL4
Ensembl:ENSBTAT00000013484 GeneID:517886 KEGG:bta:517886
InParanoid:A6QLL4 NextBio:20872534 Uniprot:A6QLL4
Length = 710
Score = 154 (59.3 bits), Expect = 7.8e-06, Sum P(3) = 7.8e-06
Identities = 73/300 (24%), Positives = 128/300 (42%)
Query: 83 KGIIFCSEITSRLL--SQILNINPKFIYPLPIKIPV---LIDGC-----EVV--LVGANH 130
K ++CS +T LL S K I + I+ P L+D E+V L+ A H
Sbjct: 56 KVCLYCSPVTKELLLTSPKYRFWEKRIVSIEIETPTQISLVDEASGEKEEIVVTLLPAGH 115
Query: 131 CPGAVQFLFKVPGRNGGFERYVHTGDFRFCKTMLLQPVMNEFAG----CDAVFLDTTYCN 186
CPG+V FLF+ G NG ++TGDFR K + + G +V+LDTT+CN
Sbjct: 116 CPGSVMFLFQ--GNNG---TVLYTGDFRLAKGEAARMELLHSGGRVKDIQSVYLDTTFCN 170
Query: 187 PKFLFPLQXXXXXXXXXXXXXXXXXXXXXLQKRVLFLVATYVIGKEKILIEIFKKCGRKV 246
PK+ Q V++L G E + + ++ G +V
Sbjct: 171 PKYY---QIPSREECLRGIMELVRSWISRSPYHVVWLNCKAAYGYEYLFTNLSEEFGLQV 227
Query: 247 CVDSRKMEVLRVLGYGDSGVFTEDESETDVHVVG---------WNEIMVE-RGYDKV--- 293
VD K+++ R + D + +T +H W+++ +++
Sbjct: 228 HVD--KLDMFRNMP--DILHHLTTDRDTQIHACRHPKAEEYFQWSKLPCGITSKNRIPLH 283
Query: 294 -VGFVP-TGWTYE-VKRNKFAVRSKDAFEIHLVPYSEHSNYDELREYVKFLKPKRVIPTV 350
+ P T W E ++ +R+ ++ + +S HS+Y E+++++ ++ P V P V
Sbjct: 284 TISIKPSTMWFGERTRKTNIIMRTGESS--YRACFSFHSSYSEIKDFLSYICPVNVYPNV 341
Score = 44 (20.5 bits), Expect = 7.8e-06, Sum P(3) = 7.8e-06
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 827 IKDVYSMLCKISVQTGS---GSTARKKSLIVNLMC-SCREKEMKF 867
IKD S +C ++V G+T K I+ +C S + E K+
Sbjct: 325 IKDFLSYICPVNVYPNVIPLGTTMDKVKEILKPLCRSSQSTEPKY 369
Score = 39 (18.8 bits), Expect = 7.8e-06, Sum P(3) = 7.8e-06
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 1126 EGDDNCLTSDVSLSKINNFLEEALHSSCEG 1155
EG D+CL + S +++ L S +G
Sbjct: 499 EGTDDCLENLPSSTEVGGSQSPKLFSDSDG 528
>FB|FBgn0030506 [details] [associations]
symbol:Lig4 "Ligase4" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=ISS] [GO:0003910 "DNA ligase (ATP)
activity" evidence=ISS;IBA] [GO:0010212 "response to ionizing
radiation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IGI]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IMP] [GO:0006273 "lagging strand elongation"
evidence=IBA] [GO:0032807 "DNA ligase IV complex" evidence=IBA]
[GO:0006266 "DNA ligation" evidence=IBA] [GO:0005694 "chromosome"
evidence=IBA] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS50160 InterPro:IPR001357 GO:GO:0005524
GO:GO:0005694 GO:GO:0003677 GO:GO:0010212 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0000723 GO:GO:0006303
GO:GO:0006289 GO:GO:0006273 eggNOG:COG1793 GO:GO:0003910
TIGRFAMs:TIGR00574 GO:GO:0032807 EMBL:AY119169
ProteinModelPortal:Q8MS06 SMR:Q8MS06 STRING:Q8MS06 PaxDb:Q8MS06
PRIDE:Q8MS06 FlyBase:FBgn0030506 InParanoid:Q8MS06
OrthoDB:EOG4NS1T2 ArrayExpress:Q8MS06 Bgee:Q8MS06 Uniprot:Q8MS06
Length = 918
Score = 157 (60.3 bits), Expect = 1.6e-05, Sum P(3) = 1.6e-05
Identities = 63/223 (28%), Positives = 98/223 (43%)
Query: 958 IKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVD-GTVRIFSRNGDETTSRF 1016
I+PML + G + +L Q+ E K DG+R Q+H +D G SRNG + T F
Sbjct: 256 IRPMLCERFPG--DIQELMQSDVLYLETKMDGERFQLH--IDRGRFMYISRNGVDYTRNF 311
Query: 1017 PDLISIINEFCKPAA-GTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSV- 1074
S + P G L E + +D + + +L RE+G V ++K
Sbjct: 312 GH--SYDHGTLTPKLRGLLPLGLESIILDGE--MMVWDTNKLRFREKGENTDVKSLKPEG 367
Query: 1075 KVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTS 1134
C V+D+++ NG+ LL +T QR L+ L E+ G Q + + G
Sbjct: 368 SWQPCFVVYDLLYFNGQSLLDHTYIQRAYKLQKLIV-EQSGVLQLMRARKI-G------- 418
Query: 1135 DVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKR-SDSW 1176
S+ + N ++AL S EGI++K + Y P R W
Sbjct: 419 --SVQEFNELFQQALDSHAEGIVLKKQG--SRYQPGVRLGGGW 457
Score = 44 (20.5 bits), Expect = 1.6e-05, Sum P(3) = 1.6e-05
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 789 GTNRSKIRDMYNRLGDLGDV 808
G K +D+Y R DLG V
Sbjct: 199 GVLHPKAQDIYQRCSDLGHV 218
Score = 37 (18.1 bits), Expect = 1.6e-05, Sum P(3) = 1.6e-05
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 335 REYVKFLKPKRVIPTVGMDIEKLDSKHANKMRKY 368
R Y++ L+ +PT D +L ++ N R Y
Sbjct: 93 RLYIRVLQ----LPTDSSDAIRLQHRNGNMYRGY 122
>UNIPROTKB|Q96SD1 [details] [associations]
symbol:DCLRE1C "Protein artemis" species:9606 "Homo
sapiens" [GO:0000723 "telomere maintenance" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0010212 "response to ionizing
radiation" evidence=IEA] [GO:0030183 "B cell differentiation"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000014
"single-stranded DNA specific endodeoxyribonuclease activity"
evidence=IDA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IDA] InterPro:IPR001279 SMART:SM00849 GO:GO:0005634
GO:GO:0010212 EMBL:CH471072 GO:GO:0006310 GO:GO:0030183
GO:GO:0006302 GO:GO:0000723 eggNOG:COG1236 GO:GO:0000014
GO:GO:0008409 InterPro:IPR011084 Pfam:PF07522 CTD:64421
HOVERGEN:HBG081421 KO:K10887 EMBL:AJ296101 EMBL:AF395747
EMBL:AF395748 EMBL:AF395749 EMBL:AF395750 EMBL:AF395751
EMBL:AF395752 EMBL:AK021422 EMBL:DQ504427 EMBL:AL360083
EMBL:AC069544 EMBL:BC000863 EMBL:BC009185 EMBL:BC022254
IPI:IPI00290459 IPI:IPI00290918 IPI:IPI00396624 IPI:IPI00607742
RefSeq:NP_001029027.1 RefSeq:NP_001029029.1 RefSeq:NP_001029030.1
RefSeq:NP_071932.2 UniGene:Hs.656065 PDB:4HTP PDBsum:4HTP
ProteinModelPortal:Q96SD1 SMR:Q96SD1 STRING:Q96SD1
PhosphoSite:Q96SD1 DMDM:71153325 PaxDb:Q96SD1 PRIDE:Q96SD1
Ensembl:ENST00000357717 Ensembl:ENST00000378241
Ensembl:ENST00000378246 Ensembl:ENST00000378249
Ensembl:ENST00000378254 Ensembl:ENST00000378255
Ensembl:ENST00000378258 Ensembl:ENST00000378278
Ensembl:ENST00000378289 Ensembl:ENST00000396817
Ensembl:ENST00000418843 Ensembl:ENST00000453695
Ensembl:ENST00000456122 GeneID:64421 KEGG:hsa:64421 UCSC:uc001inl.3
UCSC:uc001ino.3 UCSC:uc010qbx.2 GeneCards:GC10M014939
HGNC:HGNC:17642 MIM:602450 MIM:603554 MIM:605988 neXtProt:NX_Q96SD1
Orphanet:39041 Orphanet:275 PharmGKB:PA27176 InParanoid:Q96SD1
OMA:RTRTIHR PhylomeDB:Q96SD1 GenomeRNAi:64421 NextBio:66403
ArrayExpress:Q96SD1 Bgee:Q96SD1 Genevestigator:Q96SD1
GermOnline:ENSG00000152457 Uniprot:Q96SD1
Length = 692
Score = 132 (51.5 bits), Expect = 1.8e-05, Sum P(3) = 1.8e-05
Identities = 42/123 (34%), Positives = 62/123 (50%)
Query: 83 KGIIFCSEITSRLL--SQILNINPKFIYPLPIKIPV---LIDGC-----EVV--LVGANH 130
K ++CS +T LL S K I + I+ P L+D E+V L+ A H
Sbjct: 56 KVYLYCSPVTKELLLTSPKYRFWKKRIISIEIETPTQISLVDEASGEKEEIVVTLLPAGH 115
Query: 131 CPGAVQFLFKVPGRNGGFERYVHTGDFRFCKTMLLQPVMNEFAG----CDAVFLDTTYCN 186
CPG+V FLF+ G NG ++TGDFR + + + G +V+LDTT+C+
Sbjct: 116 CPGSVMFLFQ--GNNG---TVLYTGDFRLAQGEAARMELLHSGGRVKDIQSVYLDTTFCD 170
Query: 187 PKF 189
P+F
Sbjct: 171 PRF 173
Score = 59 (25.8 bits), Expect = 1.8e-05, Sum P(3) = 1.8e-05
Identities = 16/60 (26%), Positives = 30/60 (50%)
Query: 293 VVGFVP-TGWTYEVKRN-KFAVRSKDAFEIHLVPYSEHSNYDELREYVKFLKPKRVIPTV 350
++ P T W E R VR+ ++ + +S HS+Y E+++++ +L P P V
Sbjct: 284 IISIKPSTMWFGERSRKTNVIVRTGESS--YRACFSFHSSYSEIKDFLSYLCPVNAYPNV 341
Score = 43 (20.2 bits), Expect = 1.8e-05, Sum P(3) = 1.8e-05
Identities = 10/40 (25%), Positives = 18/40 (45%)
Query: 884 TILPALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVE 923
TI+P+ + ++S E + NL S S++ E
Sbjct: 613 TIVPSTGEPTTLSSETHIPEEKSLLNLSTNADSQSSSDFE 652
Score = 43 (20.2 bits), Expect = 1.8e-05, Sum P(3) = 1.8e-05
Identities = 19/77 (24%), Positives = 34/77 (44%)
Query: 611 ATLLEKTKGNVSMALDLYYDNQEGDRGKTVNRLEFSKSSVQSDSCNKDCSSALEKIVSEE 670
A+L+E+ NV D Y D + D+ T+ +++ S++ + S L + +
Sbjct: 588 ASLMEQ---NVICPKDTYSDLKSRDKDVTIVPSTGEPTTLSSETHIPEEKSLLNLSTNAD 644
Query: 671 LQHITDMSV-QRPSKEL 686
Q +D V P EL
Sbjct: 645 SQSSSDFEVPSTPEAEL 661
Score = 43 (20.2 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 15/66 (22%), Positives = 31/66 (46%)
Query: 1057 LSSRERGGKDSVITIKSVKVDICVFVFDI-MFANGEQLLGYTLRQRRKYLKDLFYDEKMG 1115
L+ + G + + T S ++ + V V + MF N ++L + R + + +
Sbjct: 204 LNCKAAYGYEYLFTNLSEELGVQVHVNKLDMFRNMPEILHHLTTDRNTQIHACRHPKAEE 263
Query: 1116 YFQYAK 1121
YFQ++K
Sbjct: 264 YFQWSK 269
Score = 40 (19.1 bits), Expect = 3.6e-05, Sum P(3) = 3.6e-05
Identities = 31/138 (22%), Positives = 54/138 (39%)
Query: 439 EEFGSKDVTALDDEETEKMVQEIRNCLPTWVTQNQIL--DLISSSGRNIVDAVSNFYEHE 496
+E S D+T+LD + ++E N + + QN I D S D E
Sbjct: 563 QERNSGDITSLDKADYRPTIKE--NIPASLMEQNVICPKDTYSDLKSRDKDVTIVPSTGE 620
Query: 497 TQLYEQEYKLPTIKHSIKSTLSPSKRKKTVTNNPKKKGKVPSKMESSGAKQPTITSFFNK 556
E +P KS L+ S + +++ + VPS E+ K+ + + K
Sbjct: 621 PTTLSSETHIP----EEKSLLNLSTNADSQSSSDFE---VPSTPEAELPKREHLQYLYEK 673
Query: 557 LLPNMSQGDVVESKSEEC 574
L + G+ + K +C
Sbjct: 674 L----ATGESIAVKKRKC 687
>SGD|S000005531 [details] [associations]
symbol:DNL4 "DNA ligase required for nonhomologous
end-joining (NHEJ)" species:4932 "Saccharomyces cerevisiae"
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IMP;IDA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0001302 "replicative cell aging" evidence=IGI]
[GO:0032807 "DNA ligase IV complex" evidence=IPI] [GO:0005634
"nucleus" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IPI] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IEA;IMP;IDA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0051103 "DNA ligation involved
in DNA repair" evidence=IEA] [GO:0003909 "DNA ligase activity"
evidence=IEA] [GO:0006266 "DNA ligation" evidence=IBA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0051301 "cell division" evidence=IEA] [GO:0016874
"ligase activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357
SGD:S000005531 Pfam:PF00533 GO:GO:0005524 EMBL:BK006948
GO:GO:0051301 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0001302 GO:GO:0007049 GO:GO:0006310 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:U43491 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0006303 eggNOG:COG1793
GO:GO:0003910 GO:GO:0051103 TIGRFAMs:TIGR00574 BRENDA:6.5.1.1
KO:K10777 GO:GO:0032807 HOGENOM:HOG000093622 OMA:CSIANGI
OrthoDB:EOG41K2MD GeneTree:ENSGT00700000104500 EMBL:Z74913
PIR:S66870 RefSeq:NP_014647.1 PDB:1Z56 PDBsum:1Z56
ProteinModelPortal:Q08387 SMR:Q08387 DIP:DIP-5801N IntAct:Q08387
MINT:MINT-672762 STRING:Q08387 EnsemblFungi:YOR005C GeneID:854166
KEGG:sce:YOR005C CYGD:YOR005c EvolutionaryTrace:Q08387
NextBio:975950 Genevestigator:Q08387 GermOnline:YOR005C
Uniprot:Q08387
Length = 944
Score = 153 (58.9 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 58/233 (24%), Positives = 103/233 (44%)
Query: 950 LSMVPGVPIKPMLAKITN-GVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDG-TVRIFSR 1007
LS+ G P LAK N ++ + + F E K DG+R Q+H + G +++ FSR
Sbjct: 246 LSIKVGFAFAPQLAKKVNLSYEKICRTLHDD-FLVEEKMDGERIQVHYMNYGESIKFFSR 304
Query: 1008 NGDETTSRFPDLIS--IINEFCK--PAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERG 1063
G + T + +S I++ + + +LD E+V D K I+ F + +
Sbjct: 305 RGIDYTYLYGASLSSGTISQHLRFTDSVKECVLDGEMVTFDAKRRV-ILPFGLVKGSAKE 363
Query: 1064 GKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEM 1123
S +I +V VFD+++ NG L L QR++YL + K +
Sbjct: 364 AL-SFNSINNVDFHPLYMVFDLLYLNGTSLTPLPLHQRKQYLNSILSPLK-------NIV 415
Query: 1124 TVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
+ C + I LE A+ EG+++K + + Y+ + R+++W
Sbjct: 416 EIVRSSRCY----GVESIKKSLEVAISLGSEGVVLKYYN--SSYNVASRNNNW 462
Score = 39 (18.8 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 3 SHPSDKNLTLDSTHLFLSTQS 23
+ PS K +T+D+ + +L + S
Sbjct: 138 AEPSSKAITIDNVNHYLDSLS 158
>UNIPROTKB|O34398 [details] [associations]
symbol:ykoU "Probable ATP-dependent DNA ligase YkoU"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003910 "DNA ligase (ATP) activity" evidence=IBA] [GO:0005694
"chromosome" evidence=IBA] [GO:0006266 "DNA ligation" evidence=IBA]
[GO:0006273 "lagging strand elongation" evidence=IBA] [GO:0006289
"nucleotide-excision repair" evidence=IBA] InterPro:IPR012310
Pfam:PF01068 PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160
GO:GO:0005524 GO:GO:0005694 GO:GO:0046872 GO:GO:0030435
GO:GO:0006310 EMBL:AL009126 GenomeReviews:AL009126_GR GO:GO:0006289
GO:GO:0006273 GO:GO:0003910 KO:K01971 eggNOG:COG3285
InterPro:IPR014146 InterPro:IPR014145 TIGRFAMs:TIGR02778
TIGRFAMs:TIGR02779 PIR:G69860 RefSeq:NP_389223.1 HSSP:P71571
ProteinModelPortal:O34398 SMR:O34398
EnsemblBacteria:EBBACT00000001060 GeneID:939372 KEGG:bsu:BSU13400
PATRIC:18974442 GenoList:BSU13400 HOGENOM:HOG000008893 OMA:LAMMVED
ProtClustDB:PRK09633 BioCyc:BSUB:BSU13400-MONOMER
InterPro:IPR014143 TIGRFAMs:TIGR02776 Uniprot:O34398
Length = 611
Score = 128 (50.1 bits), Expect = 0.00025, P = 0.00025
Identities = 56/201 (27%), Positives = 85/201 (42%)
Query: 984 EYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAG------TFILD 1037
E KYDG R I ++ V + SRNG E +S FP+ I +F K A LD
Sbjct: 22 EVKYDGYRC-ILRIHSSGVTLTSRNGVELSSTFPE----ITQFAKTAFQHLEKELPLTLD 76
Query: 1038 AEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYT 1097
E+V + N C+ F+ L R R + I + C FD++ +GE + +
Sbjct: 77 GEIVCL--VNPCRA-DFEHLQVRGRLKRPDKIQESANARPCCFLAFDLLERSGEDVTLLS 133
Query: 1098 LRQRRKYLKDLFYDEKMGYFQ--YAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEG 1155
R+K L++L K+ YAKE T++ C + E + EG
Sbjct: 134 YLDRKKSLRELISAAKLPASPDPYAKE-TIQSIP-CY------DHFDQLWEMVIKYDGEG 185
Query: 1156 IIVKSLDVDAGYSPSKRSDSW 1176
I+ K ++ + KRS W
Sbjct: 186 IVAKK--TNSKWLEKKRSSDW 204
>CGD|CAL0004348 [details] [associations]
symbol:PSO2 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001279 SMART:SM00849 CGD:CAL0004348
GO:GO:0016787 EMBL:AACQ01000059 EMBL:AACQ01000058 eggNOG:COG1236
RefSeq:XP_717085.1 RefSeq:XP_717164.1 ProteinModelPortal:Q5A5N8
GeneID:3641241 GeneID:3641328 KEGG:cal:CaO19.12822
KEGG:cal:CaO19.5362 Uniprot:Q5A5N8
Length = 537
Score = 117 (46.2 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 37/144 (25%), Positives = 62/144 (43%)
Query: 50 LIDAFRYAADFSVSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLL---SQILNINPKF 106
++D F A+ Y L+H H DH GL S G ++CS +T L ++ ++ F
Sbjct: 18 VVDKFSGTAEV---YLLTHCHQDHLQGLLNSSFCGRVYCSALTKSTLELDTRYTRVSRFF 74
Query: 107 I---YPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRN---GGFERYVHTGDFRFC 160
Y + +L+ + ++ + HCPG+ FL + +N G R
Sbjct: 75 KAKEYNETFTVDILLGKVSITMIPSYHCPGSAMFLLESFCKNVLITGDVRAESWWTLSLI 134
Query: 161 KTMLLQPVMNEFAGCDAVFLDTTY 184
K L P + D ++LDTT+
Sbjct: 135 KNPHLFPYITGLKTLDQIYLDTTF 158
Score = 58 (25.5 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 325 YSEHSNYDELREYVKFLKPKRVIP 348
+S HS+Y E R V PK V P
Sbjct: 323 FSRHSSYQESRNLVALFSPKSVYP 346
>UNIPROTKB|Q5A5N8 [details] [associations]
symbol:PSO2 "Putative uncharacterized protein PSO2"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001279 SMART:SM00849 CGD:CAL0004348
GO:GO:0016787 EMBL:AACQ01000059 EMBL:AACQ01000058 eggNOG:COG1236
RefSeq:XP_717085.1 RefSeq:XP_717164.1 ProteinModelPortal:Q5A5N8
GeneID:3641241 GeneID:3641328 KEGG:cal:CaO19.12822
KEGG:cal:CaO19.5362 Uniprot:Q5A5N8
Length = 537
Score = 117 (46.2 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 37/144 (25%), Positives = 62/144 (43%)
Query: 50 LIDAFRYAADFSVSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLL---SQILNINPKF 106
++D F A+ Y L+H H DH GL S G ++CS +T L ++ ++ F
Sbjct: 18 VVDKFSGTAEV---YLLTHCHQDHLQGLLNSSFCGRVYCSALTKSTLELDTRYTRVSRFF 74
Query: 107 I---YPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRN---GGFERYVHTGDFRFC 160
Y + +L+ + ++ + HCPG+ FL + +N G R
Sbjct: 75 KAKEYNETFTVDILLGKVSITMIPSYHCPGSAMFLLESFCKNVLITGDVRAESWWTLSLI 134
Query: 161 KTMLLQPVMNEFAGCDAVFLDTTY 184
K L P + D ++LDTT+
Sbjct: 135 KNPHLFPYITGLKTLDQIYLDTTF 158
Score = 58 (25.5 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 325 YSEHSNYDELREYVKFLKPKRVIP 348
+S HS+Y E R V PK V P
Sbjct: 323 FSRHSSYQESRNLVALFSPKSVYP 346
>UNIPROTKB|Q75CA4 [details] [associations]
symbol:LIG4 "DNA ligase 4" species:284811 "Ashbya gossypii
ATCC 10895" [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0006266 "DNA ligation"
evidence=IBA] [GO:0006273 "lagging strand elongation" evidence=IBA]
[GO:0006289 "nucleotide-excision repair" evidence=IBA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IBA] [GO:0032807 "DNA ligase IV complex" evidence=IBA]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357
Pfam:PF00533 GO:GO:0005524 GO:GO:0005694 GO:GO:0046872
GO:GO:0003677 GO:GO:0001302 GO:GO:0000790 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0006303 GO:GO:0006289
EMBL:AE016816 GenomeReviews:AE016816_GR GO:GO:0006273
eggNOG:COG1793 GO:GO:0003910 GO:GO:0051103 TIGRFAMs:TIGR00574
KO:K10777 GO:GO:0032807 RefSeq:NP_983411.1 HSSP:Q08387
ProteinModelPortal:Q75CA4 STRING:Q75CA4 EnsemblFungi:AAS51235
GeneID:4619536 KEGG:ago:AGOS_ACR008W HOGENOM:HOG000093622
OMA:CSIANGI OrthoDB:EOG41K2MD PhylomeDB:Q75CA4 Uniprot:Q75CA4
Length = 981
Score = 129 (50.5 bits), Expect = 0.00036, P = 0.00036
Identities = 57/202 (28%), Positives = 89/202 (44%)
Query: 981 FTCEYKYDGQRAQIHKLVDG-TVRIFSRNGDETTSRFPDLIS--IINEFCKPAAGT--FI 1035
F E K DG R Q+H + G ++ FSRNG T + + S I+ K G I
Sbjct: 317 FYVEEKMDGDRIQVHYMDYGNSIAYFSRNGINYTYLYGENSSKGSISNHLKFVEGVKECI 376
Query: 1036 LDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVF-VFDIMFANGEQLL 1094
LD E+V+ D++ C I+ F S + T + ++ VFD+++ NG+ L
Sbjct: 377 LDGEMVSYDKEMQC-ILPFGLTKSGASHQVNFETTGHTEPTYRPLYAVFDLLYLNGQLLT 435
Query: 1095 GYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCE 1154
+ +R++YL+ + K + + C SD I L A+ E
Sbjct: 436 NQDVVKRKEYLEKILIPSK-------NVVHLLSGPRC--SDAEA--ITAALGAAVAHGSE 484
Query: 1155 GIIVKSLDVDAGYSPSKRSDSW 1176
GI++K + YS KR DSW
Sbjct: 485 GIVLKK--ARSKYSVGKRDDSW 504
>POMBASE|SPCC1183.05c [details] [associations]
symbol:lig4 "DNA ligase Lig4" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003910 "DNA ligase (ATP) activity" evidence=ISO] [GO:0005524
"ATP binding" evidence=IC] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IMP] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0032807 "DNA ligase IV complex" evidence=TAS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051103 "DNA ligation
involved in DNA repair" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357
PomBase:SPCC1183.05c GO:GO:0005524 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0006303 eggNOG:COG1793
GO:GO:0003910 GO:GO:0051103 TIGRFAMs:TIGR00574 GO:GO:0032807
OrthoDB:EOG41K2MD PIR:T40845 RefSeq:NP_587888.2
ProteinModelPortal:O74833 STRING:O74833 PRIDE:O74833
EnsemblFungi:SPCC1183.05c.1 GeneID:2539042 NextBio:20800216
Uniprot:O74833
Length = 913
Score = 136 (52.9 bits), Expect = 0.00082, Sum P(2) = 0.00082
Identities = 66/230 (28%), Positives = 102/230 (44%)
Query: 959 KPMLAKITN-GVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETT---- 1013
+P LA + Q L+ NK F E K DG+R Q+H + G + +SRN T
Sbjct: 253 QPQLANFKKKDLHQTLEAMGNKPFWIEEKLDGERIQLH-MSSGKFQFYSRNARSYTYAYG 311
Query: 1014 SRFPDLIS-----IINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSV 1068
S + D S II F K + ILD E+V D ++ + L S +DS
Sbjct: 312 SSYFDEQSRLTQYIIGAFDKRIS-QIILDGEMVTWDPVLET-VIPYGSLRSIF---EDS- 365
Query: 1069 ITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDE--KMGYFQYAKEMTVE 1126
+ S V VFDI++ NG+ L+ Y+L RR+ L+ + E +M Y T+E
Sbjct: 366 -SSHSSYSPYYV-VFDILYLNGKSLVKYSLESRRRILEKVIVRESHRMSILPYKVGSTIE 423
Query: 1127 GDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
D+ +++ N ++E EG+++K Y +R D W
Sbjct: 424 --------DIE-AELRNVIQEG----SEGLVIKK--PSGSYHLGERMDDW 458
Score = 40 (19.1 bits), Expect = 0.00082, Sum P(2) = 0.00082
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 492 FYEHETQLYEQEYKLPTIKHSIKSTLSPSKRKKTV 526
FY+ T L E ++ + S S L P + K+ +
Sbjct: 21 FYDFVTTLLEPLSRIGKTRKSKTSNLDPYELKRKI 55
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.134 0.388 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1176 1121 0.00089 123 3 11 22 0.41 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 123
No. of states in DFA: 621 (66 KB)
Total size of DFA: 484 KB (2226 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 103.82u 0.14s 103.96t Elapsed: 00:00:04
Total cpu time: 103.86u 0.14s 104.00t Elapsed: 00:00:04
Start: Fri May 10 01:09:48 2013 End: Fri May 10 01:09:52 2013
WARNINGS ISSUED: 1