BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001045
(1176 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q42572|DNLI1_ARATH DNA ligase 1 OS=Arabidopsis thaliana GN=LIG1 PE=2 SV=2
Length = 790
Score = 365 bits (937), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 187/486 (38%), Positives = 288/486 (59%), Gaps = 20/486 (4%)
Query: 691 LVSLPPEKYDPIEHACWSSGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSP 750
L+ P +DP + +CW G+ P++ +A FDL+ E G+I +LCNM R+++A +P
Sbjct: 153 LLKKKPNDFDPEKMSCWEKGERVPFLFVALAFDLISNESGRIVITDILCNMLRTVIATTP 212
Query: 751 DDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQ 810
+D++ VYL N+IA HE +EL IG S + AI EA G ++ LGDLG VA+
Sbjct: 213 EDLVATVYLSANEIAPAHEGVELGIGESTIIKAISEAFGRTEDHVKKQNTELGDLGLVAK 272
Query: 811 ECRQTQALLAPPPPLLIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVR 870
R TQ ++ P PL + V+ +I+ ++G S +KK+ + L+ + + E +L R
Sbjct: 273 GSRSTQTMMFKPEPLTVVKVFDTFRQIAKESGKDSNEKKKNRMKALLVATTDCEPLYLTR 332
Query: 871 TLVRNLRIGAMMRTILPALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPS 930
L LR+G +T+L AL QA V N H N K L+ + + + +LP
Sbjct: 333 LLQAKLRLGFSGQTVLAALGQAAVYNE----EHSKPPPNTKSPLEEAAKIVKQVFTVLPV 388
Query: 931 LDLLIPSLMNKGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQ 990
D+++P+L++ G+ T + GVPI PMLAK T GV ++L FQ+ FTCEYKYDG+
Sbjct: 389 YDIIVPALLSGGVWNLPKTCNFTLGVPIGPMLAKPTKGVAEILNKFQDIVFTCEYKYDGE 448
Query: 991 RAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCK 1050
RAQIH + DGT I+SRN + T ++PD+ ++ KP+ +FILD EVVA DR+ K
Sbjct: 449 RAQIHFMEDGTFEIYSRNAERNTGKYPDVALALSRLKKPSVKSFILDCEVVAFDREKK-K 507
Query: 1051 IMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFY 1110
I+ FQ LS+R R + + +KV +C+F FD+++ NG+QL+ L+ RR+ L + F
Sbjct: 508 ILPFQILSTRARKN----VNVNDIKVGVCIFAFDMLYLNGQQLIQENLKIRREKLYESF- 562
Query: 1111 DEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPS 1170
+E GYFQ+A +T ++D+ +I FL+ ++ CEG+I+K+LD DA Y P+
Sbjct: 563 EEDPGYFQFATAVT--------SNDI--DEIQKFLDASVDVGCEGLIIKTLDSDATYEPA 612
Query: 1171 KRSDSW 1176
KRS++W
Sbjct: 613 KRSNNW 618
>sp|P37913|DNLI1_MOUSE DNA ligase 1 OS=Mus musculus GN=Lig1 PE=1 SV=2
Length = 916
Score = 359 bits (922), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 196/502 (39%), Positives = 291/502 (57%), Gaps = 24/502 (4%)
Query: 683 SKELMDPTLVSLPPEKYDPIEHACWSSGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMF 742
+K +DP + Y PIE ACW GQ P++ +ARTF+ +E ++K + L N+
Sbjct: 255 TKGTLDPANYNPSKNNYHPIEDACWKHGQKVPFLAVARTFEKIEEVSARLKMVETLSNLL 314
Query: 743 RSLLALSPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEACGTNRSKIRDMYNRL 802
RS++ALSP D+LP +YL N++ + +EL +G ++ A+ +A G IR
Sbjct: 315 RSVVALSPPDLLPVLYLSLNRLGPPQQGLELGVGDGVLLKAVAQATGRQLESIRAEVAEK 374
Query: 803 GDLGDVAQECRQTQALLAPPPPLLIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCRE 862
GD+G VA+ R TQ L+ PPPPL I V++ C I+ TGS S A+K +I L +CR
Sbjct: 375 GDVGLVAENSRSTQRLMLPPPPLTISGVFTKFCDIARLTGSASMAKKMDIIKGLFVACRH 434
Query: 863 KEMKFLVRTLVRNLRIGAMMRTILPALAQAVVMN-SSLEF------SHEGKM-ENLKEKL 914
E +++ R+L LR+G +++L ALAQAV + EF + +GK E K L
Sbjct: 435 SEARYIARSLSGRLRLGLAEQSVLAALAQAVSLTPPGQEFPTVVVDAGKGKTAEARKMWL 494
Query: 915 QSLSAAAVEAYNILPSLDLLIPSLMNKGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLK 974
+ + + +P LD +IP L+ G+ + PGVP+KPMLA T GV +VLK
Sbjct: 495 EEQGMILKQTFCEVPDLDRIIPVLLEHGLERLPEHCKLSPGVPLKPMLAHPTRGVSEVLK 554
Query: 975 LFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTF 1034
F+ FTCEYKYDGQRAQIH L G V+IFSRN ++ T ++PD+IS I + P+ +F
Sbjct: 555 RFEEVDFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGKYPDIISRIPKIKHPSVTSF 614
Query: 1035 ILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLL 1094
ILD E VA DR+ +I FQ L++R+R D+ ++V +C++ FD+++ NGE L+
Sbjct: 615 ILDTEAVAWDREKK-QIQPFQVLTTRKRKEVDA----SEIQVQVCLYAFDLIYLNGESLV 669
Query: 1095 GYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCE 1154
L +RR+ L++ F E G F + + T D +I FLE+++ SCE
Sbjct: 670 RQPLSRRRQLLRENFV-ETEGEFVFTTSLD--------TKDT--EQIAEFLEQSVKDSCE 718
Query: 1155 GIIVKSLDVDAGYSPSKRSDSW 1176
G++VK+LDVDA Y +KRS +W
Sbjct: 719 GLMVKTLDVDATYEIAKRSHNW 740
>sp|P18858|DNLI1_HUMAN DNA ligase 1 OS=Homo sapiens GN=LIG1 PE=1 SV=1
Length = 919
Score = 358 bits (918), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 193/498 (38%), Positives = 291/498 (58%), Gaps = 24/498 (4%)
Query: 687 MDPTLVSLPPEKYDPIEHACWSSGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLL 746
+DP+ + Y P+E ACW GQ PY+ +ARTF+ +E +++ + L N+ RS++
Sbjct: 261 LDPSGYNPAKNNYHPVEDACWKPGQKVPYLAVARTFEKIEEVSARLRMVETLSNLLRSVV 320
Query: 747 ALSPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLG 806
ALSP D+LP +YL N + + +EL +G ++ A+ +A G +R GD+G
Sbjct: 321 ALSPPDLLPVLYLSLNHLGPPQQGLELGVGDGVLLKAVAQATGRQLESVRAEAAEKGDVG 380
Query: 807 DVAQECRQTQALLAPPPPLLIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMK 866
VA+ R TQ L+ PPPPL V+S I+ TGS STA+K +I L +CR E +
Sbjct: 381 LVAENSRSTQRLMLPPPPLTASGVFSKFRDIARLTGSASTAKKIDIIKGLFVACRHSEAR 440
Query: 867 FLVRTLVRNLRIGAMMRTILPALAQAVVMN-SSLEF------SHEGK-MENLKEKLQSLS 918
F+ R+L LR+G +++L AL+QAV + EF + +GK E K L+
Sbjct: 441 FIARSLSGRLRLGLAEQSVLAALSQAVSLTPPGQEFPPAMVDAGKGKTAEARKTWLEEQG 500
Query: 919 AAAVEAYNILPSLDLLIPSLMNKGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQN 978
+ + +P LD +IP L+ G+ + PG+P+KPMLA T G+ +VLK F+
Sbjct: 501 MILKQTFCEVPDLDRIIPVLLEHGLERLPEHCKLSPGIPLKPMLAHPTRGISEVLKRFEE 560
Query: 979 KAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILDA 1038
AFTCEYKYDGQRAQIH L G V+IFSRN ++ T ++PD+IS I + P+ +FILD
Sbjct: 561 AAFTCEYKYDGQRAQIHALEGGEVKIFSRNQEDNTGKYPDIISRIPKIKLPSVTSFILDT 620
Query: 1039 EVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTL 1098
E VA DR+ +I FQ L++R+R D+ ++V +C++ FD+++ NGE L+ L
Sbjct: 621 EAVAWDREKK-QIQPFQVLTTRKRKEVDA----SEIQVQVCLYAFDLIYLNGESLVREPL 675
Query: 1099 RQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIV 1158
+RR+ L++ F E G F +A + T D+ +I FLE+++ SCEG++V
Sbjct: 676 SRRRQLLRENFV-ETEGEFVFATSLD--------TKDI--EQIAEFLEQSVKDSCEGLMV 724
Query: 1159 KSLDVDAGYSPSKRSDSW 1176
K+LDVDA Y +KRS +W
Sbjct: 725 KTLDVDATYEIAKRSHNW 742
>sp|Q9JHY8|DNLI1_RAT DNA ligase 1 OS=Rattus norvegicus GN=Lig1 PE=2 SV=1
Length = 918
Score = 352 bits (903), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 197/523 (37%), Positives = 297/523 (56%), Gaps = 32/523 (6%)
Query: 666 IVSEELQHITDMSVQRPSKELMDPTLVSLPPEKYDPIEHACWSSGQPAPYIHLARTFDLV 725
+ +E Q +D + +K DPT + Y PIE ACW GQ P++ +ARTF+ +
Sbjct: 240 VKTEVKQEESDTPRKEETKGAPDPTNYNPSKSNYHPIEDACWKHGQKVPFLAVARTFEKI 299
Query: 726 EAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIE 785
E ++K + L N+ RS++ALSP D+LP +YL N++ + +EL +G ++ A+
Sbjct: 300 EEVSARLKMVETLSNLLRSVVALSPTDLLPVLYLSLNRLGPPQQGLELGVGDGVLLKAVA 359
Query: 786 EACGTNRSKIRDMYNRLGDLGDVAQECRQTQALLAPPPPLLIKDVYSMLCKISVQTGSGS 845
+A G IR GD+G VA+ R TQ L+ P PPL + V++ C I+ TGS S
Sbjct: 360 QATGRQLESIRAEVAEKGDVGLVAENSRSTQRLMLPSPPLTVSGVFTKFCDIARLTGSAS 419
Query: 846 TARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQA------------V 893
A+K +I L +CR E +F+ R+L LR+G +++L ALAQA V
Sbjct: 420 MAKKMDIIKGLFVACRYSEARFIARSLSGRLRLGLAEQSVLAALAQAGSLTPPGQEFPTV 479
Query: 894 VMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMNKGIGFSASTLSMV 953
V+++ + E + L+E+ L E +P LD +IP L+ G+ +
Sbjct: 480 VVDAGKGKTAEARKMWLEEQGMILKQTFCE----VPDLDRIIPVLLEHGLESLPEHCKLS 535
Query: 954 PGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETT 1013
PGVP+KPMLA T GV +VLK F+ FTCEYKY GQRAQIH L G V+IFSRN ++ +
Sbjct: 536 PGVPLKPMLAHPTRGVREVLKRFEEVDFTCEYKYYGQRAQIHVLEGGEVKIFSRNQEDNS 595
Query: 1014 SRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKS 1073
++PD+IS I + P+ +FILD E VA DR+ +I FQ L++R+R D+
Sbjct: 596 GKYPDIISRIPKIKHPSVTSFILDTEAVAWDREKK-QIQPFQVLTTRKRKEVDA----SE 650
Query: 1074 VKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLT 1133
++V +C++ FD+++ NGE L L +RR+ L++ F E G F +A + T
Sbjct: 651 IQVQVCLYAFDLIYLNGESLARQPLSRRRQLLRENFV-ETEGEFVFATSLD--------T 701
Query: 1134 SDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
D+ +I FLE+++ SCEG++VK+LDVDA Y +KRS +W
Sbjct: 702 KDI--EQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNW 742
>sp|P51892|DNLI1_XENLA DNA ligase 1 OS=Xenopus laevis GN=lig1 PE=2 SV=1
Length = 1070
Score = 347 bits (890), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 185/491 (37%), Positives = 283/491 (57%), Gaps = 32/491 (6%)
Query: 698 KYDPIEHACWSSGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAV 757
KY PI+ ACW +GQ PY+ +ARTF+ +E E ++K + L N RS++AL+P+D+LP +
Sbjct: 425 KYHPIDDACWCNGQKVPYLAVARTFERIEEESARLKNVETLSNFLRSVIALTPEDLLPCI 484
Query: 758 YLCTNKIASNHENIELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQA 817
YLC N++ +E +EL IG +++ A+ +A G KI+ GDLG VA+ R Q
Sbjct: 485 YLCLNRLGPAYEGLELGIGETILMKAVAQATGRQLEKIKAEAQEKGDLGLVAESSRSNQR 544
Query: 818 LLAPPPPLLIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLR 877
+ PP L+ V+ L I+ TG+ S +K +I L +CR E +++ R+L LR
Sbjct: 545 TMFTPPKLMASGVFGKLKDIARMTGNASMNKKIDIIKGLFVACRHSEARYIARSLGGKLR 604
Query: 878 IGAMMRTILPALAQAV------------VMNSSLEFSHEGKMENLKEKLQSLSAAAVEAY 925
IG +++L ++AQAV VM++ S + + ++EK L E
Sbjct: 605 IGLAEQSVLSSIAQAVCLTPPGRDAPPTVMDAGKGMSADARKSWIEEKAMILKQTFCE-- 662
Query: 926 NILPSLDLLIPSLMNKGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEY 985
LP+ D +IP L+ GI + PG+P+KPMLA T G+ +VLK F AFTCEY
Sbjct: 663 --LPNYDAIIPILLEHGIDDLPKHCRLTPGIPLKPMLAHPTKGIGEVLKRFDEAAFTCEY 720
Query: 986 KYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDR 1045
KYDG+RAQIH L +G V ++SRN + T+++PD+IS I + K + + ILD E VA D
Sbjct: 721 KYDGERAQIHILENGEVHVYSRNQENNTTKYPDIISRIPKIKKESVKSCILDTEAVAGDA 780
Query: 1046 KNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYL 1105
+ +I FQ L++R+R D+ +KV +CV+ FD+++ NGE L+ +RR+ L
Sbjct: 781 EKK-QIQPFQVLTTRKRKDVDA----SEIKVQVCVYAFDMLYLNGESLVKEPFAKRRQLL 835
Query: 1106 KDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDA 1165
+D F E G F +A M D +I+ FL++++ SCEG++VK+L+ DA
Sbjct: 836 RDSFL-ETEGQFMFATYMDKSNTD----------EISEFLDQSIKDSCEGLMVKTLEQDA 884
Query: 1166 GYSPSKRSDSW 1176
Y +KRS +W
Sbjct: 885 TYEIAKRSHNW 895
>sp|Q869E1|DNLI1_DICDI DNA ligase 1 OS=Dictyostelium discoideum GN=lig1 PE=3 SV=1
Length = 1192
Score = 342 bits (876), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 185/488 (37%), Positives = 297/488 (60%), Gaps = 25/488 (5%)
Query: 698 KYDPIEHACWSSGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAV 757
KY PIE A W G+ PY+ LA+TF+++E+ ++ + L N+FRS++ LSP D++ +
Sbjct: 547 KYRPIEDAQWKKGEAVPYMVLAKTFEMMESTSSRLIIIEHLANLFRSIMLLSPKDLVMTI 606
Query: 758 YLCTNKIASNHENIELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQA 817
YL NKI ++++ EL IG ++ ++ E+ G + I+ +GDLG +AQ R TQ
Sbjct: 607 YLSINKIGPSYQSKELGIGEHVLIKSLAESTGRSVDVIKQELTEVGDLGIIAQNSRSTQT 666
Query: 818 LLAPPPPLLIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLR 877
L+ P PL I+ V+ +I+ +G+G +KK LI L+ SC++ E +++R+L LR
Sbjct: 667 LMGKPTPLTIQSVFKTFQQIADLSGTGGQQKKKDLIKKLLVSCKDCETLYIIRSLQGKLR 726
Query: 878 IGAMMRTILPALAQAVVMNSSLEFS--------HEGKMENLKEKLQSLSAAAVEAYNILP 929
IG R++L ALA++V++ ++ S + K E +E+ Q++ + AY+ LP
Sbjct: 727 IGLAERSVLMALAKSVLVTPPIDGSGQQIFDIRKQMKQEEFEERYQNVVSKVTRAYSQLP 786
Query: 930 SLDLLIPSLMN-KGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYD 988
+ DL +P L+ GI ST S+ G+P+KPMLA+ T G+ Q+L F + FTCE+KYD
Sbjct: 787 NYDLFVPHLIAVNGIDNILSTCSLKVGIPVKPMLAQPTTGISQMLDRFSDMEFTCEFKYD 846
Query: 989 GQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNG 1048
G+RAQIH+L DGT I++RN ++ T ++PD+++ + +F P +FILD E VA D
Sbjct: 847 GERAQIHRLPDGTTHIYTRNLEDYTQKYPDIVANVTKFVGPNVKSFILDCEAVAFDAATK 906
Query: 1049 CKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDL 1108
KI+SFQ LS+R R + + +KV +CVF FD+++ NG+ L+ L +RR++L +
Sbjct: 907 -KILSFQVLSTRARKS----VQLSQIKVPVCVFAFDLLYLNGQSLIDEPLIKRREHLVEN 961
Query: 1109 FYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYS 1168
F G F +AK + SDV + I ++LEEA+ +CEG++VK+L + Y
Sbjct: 962 FIASD-GVFAFAKYSNI--------SDV--NDIQSYLEEAVEGNCEGLMVKTLKEKSIYE 1010
Query: 1169 PSKRSDSW 1176
PS+RS +W
Sbjct: 1011 PSRRSYNW 1018
>sp|Q9W1H4|DNLI1_DROME DNA ligase 1 OS=Drosophila melanogaster GN=DNA-ligI PE=1 SV=2
Length = 747
Score = 319 bits (818), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 168/481 (34%), Positives = 288/481 (59%), Gaps = 21/481 (4%)
Query: 697 EKYDPIEHACWSSGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPA 756
+ Y P+++A W + PY+ LARTF ++E +G++K + L N F S++ +SP+D++P+
Sbjct: 109 DSYHPLKNAYWKDKKVTPYLALARTFQVIEETKGRLKMIDTLSNFFCSVMLVSPEDLVPS 168
Query: 757 VYLCTNKIASNHENIELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQ 816
VYL N++A +E +EL + + + AI +A G N + I+ GDLG VA++ R +Q
Sbjct: 169 VYLSINQLAPAYEGLELGVAETTLMKAICKATGRNLAHIKSQTQLTGDLGIVAEQSRVSQ 228
Query: 817 ALLAPPPPLLIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNL 876
++ P PL ++DV+ L +I+ +G K L+ N+ +CR E +F +R+L+ L
Sbjct: 229 RMMFQPAPLNVRDVFRKLREIAKLSGQS----KMDLVYNMFVACRSSEARFFIRSLIGKL 284
Query: 877 RIGAMMRTILPALAQAVVMNSSLEFSHEGKMENL-KEKLQSLSAAAVEAYNILPSLDLLI 935
RIG +++L ALA +V + ++ K+ ++ K+++ + AY P+ D++I
Sbjct: 285 RIGIAEQSLLTALAIGLVKKNHIDDCKASKVPDVYKDEIVDTTLLLKTAYCQCPNYDIII 344
Query: 936 PSLMNKGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIH 995
P+++ I M PG+P++PMLA+ T GV +V + F TCE+KYDG+RAQIH
Sbjct: 345 PAILKYDIKELQERCPMHPGMPLRPMLAQPTKGVHEVFERFGGMQITCEWKYDGERAQIH 404
Query: 996 KLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQ 1055
+ G + IFSRN + T+++PDLI+ K ++I+D+E+VA D + +I+ FQ
Sbjct: 405 RNEKGEISIFSRNSENNTAKYPDLIARSTALLKGDVKSYIIDSEIVAWDVERK-QILPFQ 463
Query: 1056 ELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMG 1115
LS+R+R D I+ +KV +CV++FD+++ NG L+ L +RRK L + F E G
Sbjct: 464 VLSTRKRKNVD----IEEIKVQVCVYIFDLLYINGTALVTKNLSERRKLLLEHF-QEVEG 518
Query: 1116 YFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDS 1175
+++A + T+D+ ++ FLEE++ +CEG++VK+LD +A Y +KRS +
Sbjct: 519 EWKFATALD--------TNDI--DEVQQFLEESIKGNCEGLMVKTLDEEATYEIAKRSRN 568
Query: 1176 W 1176
W
Sbjct: 569 W 569
>sp|P12000|DNLI1_SCHPO DNA ligase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cdc17 PE=3 SV=1
Length = 768
Score = 301 bits (772), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 174/465 (37%), Positives = 259/465 (55%), Gaps = 21/465 (4%)
Query: 713 APYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENIE 772
A + + + F +E +++ + ++ F +L P D+L VYL NK+ ++ +E
Sbjct: 147 ATFAEMVKAFTKIENTSKRLEIIDIMGTYFFGILRDHPSDLLACVYLSINKLGPDYSGLE 206
Query: 773 LNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQALLAPPPPLLIKDVYS 832
L IG S++ AI E+ G +I+ ++++GDLG VAQ RQ Q + P L I ++
Sbjct: 207 LGIGESIIMKAIGESTGQTLQQIKLSFHKVGDLGLVAQTSRQNQPTMFKPAALTIPFLFD 266
Query: 833 MLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQA 892
L KI+ +G+ S RK +I L+ SC E K+L+R L LR+ +TIL ALA A
Sbjct: 267 SLKKIAQMSGNQSQNRKIGVIKRLLSSCEGAEPKYLIRALEGKLRLQLAEKTILVALANA 326
Query: 893 VVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMNKGIGFSASTLSM 952
+ + + ++ E Q L + Y LPS DL++P L+ G+G T +
Sbjct: 327 TAQYHADKNGEKLSQQDRIEGEQILR----DVYCQLPSYDLIVPHLIEHGLGTLRETCKL 382
Query: 953 VPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDET 1012
PG+P KPMLAK T + +VL F AFTCEYKYDG+RAQ+H DG +FSRN +
Sbjct: 383 TPGIPTKPMLAKPTKQISEVLNTFDQAAFTCEYKYDGERAQVHFTEDGKFYVFSRNSENM 442
Query: 1013 TSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIK 1072
+ R+PD+ ++++ KP A +FILD E V DR KI+ FQ+L++R+R KD + I
Sbjct: 443 SVRYPDISVSVSKWKKPDARSFILDCEAVGWDRDEN-KILPFQKLATRKR--KD--VKIG 497
Query: 1073 SVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCL 1132
+KV C+F FDI++ NG+ LL L +RRK L +F G F +AK
Sbjct: 498 DIKVRACLFAFDILYLNGQPLLETPLNERRKLLYSMF-QPSTGDFTFAKH---------- 546
Query: 1133 TSDVSLSKINNFLEEALHSSCEGIIVKSLD-VDAGYSPSKRSDSW 1176
+ S+ I FLEE++ SCEG++VK L+ D+ Y PSKRS W
Sbjct: 547 SDQKSIESIEEFLEESVKDSCEGLMVKMLEGPDSHYEPSKRSRHW 591
>sp|Q27474|DNLI1_CAEEL DNA ligase 1 OS=Caenorhabditis elegans GN=lig-1 PE=3 SV=2
Length = 773
Score = 290 bits (741), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 165/475 (34%), Positives = 263/475 (55%), Gaps = 31/475 (6%)
Query: 707 WSSGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIAS 766
W+ G PY A T + +E GK K + L F +L SPDD+ VY+ N++
Sbjct: 13 WAKGSKVPYKEFALTLEKIEELSGK-KKVDELAQFFTKVLDFSPDDLTACVYMSVNQLGP 71
Query: 767 NHENIELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQALLAPPPPLL 826
++E +EL + + + A+ +A G KI++ GDLG VAQ+ R Q +LA P L
Sbjct: 72 SYEGLELGVAENSLIKAVAKATGRTEGKIKEDLRAKGDLGTVAQQSRSNQKMLAVPKALT 131
Query: 827 IKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTIL 886
+ V++ L +I+ +G+ + +K I L+ +C+ E +FLVR L +RIG +++L
Sbjct: 132 VPTVFNKLTEIAKLSGTSAMNKKVDAISALLIACQGIEARFLVRMLAGKMRIGLGEQSVL 191
Query: 887 PALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVE----AYNILPSLDLLIPSLMNKG 942
AL A ++ + G +KL SL A V+ AY P+ + LI + +G
Sbjct: 192 SALGHAFTLSKITDQKVRG------DKLDSLKDANVKRVKTAYCECPNYNRLIEVALTEG 245
Query: 943 IGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTV 1002
+ + PG+P+KPMLA T G+ ++++ F+N+ TCE+KYDG+R QIHK DG +
Sbjct: 246 VEALVEKCKLSPGIPLKPMLAHPTKGIDEIMRRFRNQTMTCEWKYDGERGQIHKREDGQI 305
Query: 1003 RIFSRNGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRER 1062
I+SRN + T+++PD+I I+ +FI+DAEVVAID I+ FQ LS+R+R
Sbjct: 306 FIYSRNQENNTTKYPDIIEKISSCIGDGVTSFIVDAEVVAID--EAGLILPFQVLSTRKR 363
Query: 1063 GGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKM-GYFQYAK 1121
+K + VF+FD+++ NGE L+ LR+RR+ L+ F +K+ G F +A
Sbjct: 364 KNATDDNGVK-----VVVFLFDLLYFNGEPLVRKPLRKRRELLRTNF--KKIDGSFYFAT 416
Query: 1122 EMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
+ D +IN+F +EA+ + CEG+++K+LD +A Y S+RS SW
Sbjct: 417 SVDTNDTD----------EINSFFDEAVQNKCEGLMIKTLDTEATYEISRRSHSW 461
>sp|Q9C1W9|DNLI3_SCHPO DNA ligase 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=adl1 PE=3 SV=1
Length = 774
Score = 285 bits (730), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 160/467 (34%), Positives = 270/467 (57%), Gaps = 22/467 (4%)
Query: 715 YIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENIELN 774
Y LA TF L+ + + +I+ +++L N +LL PD ++ V+LCTN IA N L
Sbjct: 162 YSSLANTFSLISSTKSRIRIVTLLTNFLLTLLYADPDSLIATVWLCTNSIAPNFYGKNLG 221
Query: 775 IGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQALLAPPPPLLIKDVYSML 834
+G ++ + A++E CG S +++++N+ GD GDVA E + + L+ P PL IK VYS L
Sbjct: 222 VGPAMYSKALKEVCGITASALKNLWNKYGDPGDVAFEAKVSVRTLSRPEPLTIKKVYSTL 281
Query: 835 CKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQAVV 894
KI+ G+G+ RK L L+ S +E++++ R++++NLRIGA+ T+L +L++A
Sbjct: 282 LKIADSNGNGAQNRKLELTKFLLISSNAEEVRYIGRSIMQNLRIGAVQNTMLASLSKAFF 341
Query: 895 MNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMNKGIGFSASTLSMVP 954
+ + ++L+++ + +++ +P ++L+ +L+ +GI +S+ P
Sbjct: 342 IFDNQNEIFNFNSDSLQQQFRQGEEIVKQSFFQVPDYNILVATLLREGIENLKDNMSIRP 401
Query: 955 GVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTS 1014
G+P+KPML IT + +L+ + F+CE+KYDGQRAQIH G ++IFSR+ +E T
Sbjct: 402 GIPVKPMLGSITKNLQHMLERLTDHNFSCEFKYDGQRAQIHCDRLGNIKIFSRHLEEITG 461
Query: 1015 RFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSV 1074
RFPD+I + K + FI++ E+VAID+ NG +I+ FQ+LS+RER +T+ +
Sbjct: 462 RFPDVIEVAQLALKHSCD-FIIEGELVAIDKSNG-QILDFQKLSTRERKK----VTVADI 515
Query: 1075 KVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTS 1134
+D+CVFVFDIMF +G+ L L +RR+ + F + FQ+ + + +
Sbjct: 516 TIDVCVFVFDIMFCDGKSCLQMPLIERRRMFFEHF-NLIPNRFQFVSSLETNEEQS---- 570
Query: 1135 DVSLSKINNFLEEALHSSCEGIIVKSLD-----VDAGYSPSKRSDSW 1176
I F A+ + CEG++VK L+ + Y P KR + W
Sbjct: 571 ------IQEFFSLAITNKCEGLMVKVLNGTNSKFPSTYEPDKRGEGW 611
>sp|P04819|DNLI1_YEAST DNA ligase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=CDC9 PE=1 SV=2
Length = 755
Score = 273 bits (698), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 168/475 (35%), Positives = 277/475 (58%), Gaps = 39/475 (8%)
Query: 714 PYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHE-NIE 772
PY + F+ +EA +++ + + + F ++ S +++P YL N++ ++E +E
Sbjct: 147 PYSEVCEVFNKIEAISSRLEIIRICSDFFIKIMKQSSKNLIPTTYLFINRLGPDYEAGLE 206
Query: 773 LNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQALLAPPPPLLIKDVYS 832
L +G +L+ I E CG + S+I+ Y +GDLG++A R Q + P PL + +V+
Sbjct: 207 LGLGENLLMKTISETCGKSMSQIKLKYKDIGDLGEIAMGARNVQPTMFKPKPLTVGEVFK 266
Query: 833 MLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQA 892
L I+ G S +K LI ++ +C+ E KFL+R+L LRIG +T+L +L++A
Sbjct: 267 NLRAIAKTQGKDSQLKKMKLIKRMLTACKGIEAKFLIRSLESKLRIGLAEKTVLISLSKA 326
Query: 893 VVMNSSLEFSHEGKMENLKEK------LQSLSAAAVEAYNILPSLDLLIPSLMNKGIGFS 946
+++ H+ E+ +K L+S +A+ +P+ +++I S + GI
Sbjct: 327 LLL-------HDENREDSPDKDVPMDVLESAQQKIRDAFCQVPNYEIVINSCLEHGIMNL 379
Query: 947 ASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFS 1006
++ PG+P+KPMLAK T + +VL FQ + FT EYKYDG+RAQ+H L DGT+RI+S
Sbjct: 380 DKYCTLRPGIPLKPMLAKPTKAINEVLDRFQGETFTSEYKYDGERAQVHLLNDGTMRIYS 439
Query: 1007 RNGDETTSRFPDLISIINEFCKPAAGT--FILDAEVVAIDRKNGCKIMSFQELSSRERGG 1064
RNG+ T R+P++ I +F + T ILD E VA D+ G KI+ FQ LS+R+R
Sbjct: 440 RNGENMTERYPEI--NITDFIQDLDTTKNLILDCEAVAWDKDQG-KILPFQVLSTRKR-- 494
Query: 1065 KDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKM--GYFQYAKE 1122
KD + + VKV +C+F FDI+ N E+L+ +L++RR+YL + K+ G FQYA +
Sbjct: 495 KD--VELNDVKVKVCLFAFDILCYNDERLINKSLKERREYLTKV---TKVVPGEFQYATQ 549
Query: 1123 MTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLD-VDAGYSPSKRSDSW 1176
+T +L ++ FL+E+++ SCEG++VK L+ ++ Y PSKRS +W
Sbjct: 550 ITTN----------NLDELQKFLDESVNHSCEGLMVKMLEGPESHYEPSKRSRNW 594
>sp|Q9JIC3|DCR1A_MOUSE DNA cross-link repair 1A protein OS=Mus musculus GN=Dclre1a PE=1 SV=2
Length = 1026
Score = 222 bits (565), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 128/351 (36%), Positives = 197/351 (56%), Gaps = 35/351 (9%)
Query: 36 RTFPPSKHVPNTRFLIDAFRYAA-DFSVSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSR 94
RT P K +P T F +DAF+Y + +YFL+HFHSDHY GLS +++ ++CSEIT
Sbjct: 685 RTCPFYKRIPGTGFTVDAFQYGEIEGCTAYFLTHFHSDHYAGLSKDFTR-PVYCSEITGN 743
Query: 95 LLSQILNINPKFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHT 154
LL + L + ++I LP+ ++D +VVL+ ANHCPGA LF++P NG +HT
Sbjct: 744 LLKKKLRVQEQYIRQLPMDTECVVDSVKVVLLDANHCPGATMILFQLP--NGAV--ILHT 799
Query: 155 GDFRFCKTMLLQPVMNEFAG--CDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRVGGEL 212
GDFR +M + AG +FLDTTYC+P++ FP Q+E +++ +N
Sbjct: 800 GDFRADPSM----ERSRLAGRKVHTLFLDTTYCSPEYTFPSQQEVIQFAINTAFEA---- 851
Query: 213 NEGLQKRVLFLVATYVIGKEKILIEIFKKCGRKVCVDSRKMEVLRVLGYGD-SGVFTEDE 271
L R L + TY IGKEK+ + I G KV + K + L+ L + S + T D
Sbjct: 852 -VTLNPRALVVCGTYCIGKEKVFLAIADVLGSKVGMSQEKYKTLQCLNIPEVSSLITTDM 910
Query: 272 SETDVHVVGWNEIMVE----------RGYDKVVGFVPTGWTYEVKRNKFA---VRSKDAF 318
++ VH++ +I + YD+++ F PTGWT+ A +++
Sbjct: 911 CDSLVHLLPMMQINFKGLQSHLKKCGGKYDQILAFRPTGWTHSNNITSTADIIPQTRGNI 970
Query: 319 EIHLVPYSEHSNYDELREYVKFLKPKRVIPTVGMDIEKLDSKHANKMRKYF 369
I+ +PYSEHS+Y E++ +V++LKP+++IPTV ++ S+ N M KYF
Sbjct: 971 SIYGIPYSEHSSYLEMKRFVQWLKPQKIIPTV--NVGSFRSR--NTMEKYF 1017
>sp|Q38961|SNM1_ARATH DNA cross-link repair protein SNM1 OS=Arabidopsis thaliana GN=SNM1
PE=2 SV=1
Length = 484
Score = 221 bits (562), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 131/332 (39%), Positives = 189/332 (56%), Gaps = 26/332 (7%)
Query: 35 PRTFPPSKHVPNTRFLIDAFRYAADFSVS-YFLSHFHSDHYTGLSPSWSKGIIFCSEITS 93
PR P K +P T F +DAFRY S YFL+HFH+DHY GL+ +WS G I+CS +TS
Sbjct: 142 PRPCPFYKKLPGTPFTVDAFRYGCVQGCSAYFLTHFHADHYIGLTKAWSHGPIYCSSLTS 201
Query: 94 RLLSQILNINPKFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVH 153
RLL L++NP I+PL + + I+G +V L+ ANHCPGA F++ Y+H
Sbjct: 202 RLLRLSLSVNPSSIHPLELDVEYTINGIKVTLIEANHCPGAALIHFRLLDGTC----YLH 257
Query: 154 TGDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRVGGELN 213
TGDFR K M P++ ++LDTTYCNP++ FP +E+ + YVV + +
Sbjct: 258 TGDFRASKQMQTHPLLFN-QRVHVLYLDTTYCNPRYKFPSKEDVLSYVVRITKDFLRK-- 314
Query: 214 EGLQKRVLFLVATYVIGKEKILIEIFKKCGRKVCVDSRKMEVLRVLGYGD-SGVFTEDES 272
Q + L +V +Y IGKE + + I K G K+ ++ + +L+ G+ D S + D
Sbjct: 315 ---QPKTLIVVGSYSIGKECVYLAIAKALGVKIFANASRRRILQSFGWDDISKNLSTDGK 371
Query: 273 ETDVHVVGWNEIMVER----------GYDKVVGFVPTGWTYEVKRNK----FAVRSKDAF 318
T +HV+ + + VER Y V+ F PTGWTY K + S+
Sbjct: 372 ATCLHVLPMSSLKVERLDEHLKIYREQYGAVLAFRPTGWTYSEKIGEHLDLIKPTSRGKI 431
Query: 319 EIHLVPYSEHSNYDELREYVKFLKPKRVIPTV 350
I+ VPYSEHS++ ELRE+V+FL+P ++IPTV
Sbjct: 432 TIYGVPYSEHSSFTELREFVQFLRPDKIIPTV 463
>sp|Q6PJP8|DCR1A_HUMAN DNA cross-link repair 1A protein OS=Homo sapiens GN=DCLRE1A PE=1 SV=3
Length = 1040
Score = 218 bits (554), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 125/349 (35%), Positives = 196/349 (56%), Gaps = 31/349 (8%)
Query: 36 RTFPPSKHVPNTRFLIDAFRYAA-DFSVSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSR 94
+T P K +P T F +DAF+Y + +YFL+HFHSDHY GLS ++ ++CSEIT
Sbjct: 699 KTCPFYKKIPGTGFTVDAFQYGVVEGCTAYFLTHFHSDHYAGLSKHFT-FPVYCSEITGN 757
Query: 95 LLSQILNINPKFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHT 154
LL L++ ++I+PLP+ +++G +VVL+ ANHCPGAV LF +P NG +HT
Sbjct: 758 LLKNKLHVQEQYIHPLPLDTECIVNGVKVVLLDANHCPGAVMILFYLP--NGTV--ILHT 813
Query: 155 GDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRVGGELNE 214
GDFR +M + ++ ++LDTTYC+P++ FP Q+E + + +N
Sbjct: 814 GDFRADPSMERSLLADQ--KVHMLYLDTTYCSPEYTFPSQQEVIRFAINTAFEA-----V 866
Query: 215 GLQKRVLFLVATYVIGKEKILIEIFKKCGRKVCVDSRKMEVLRVLGYGD-SGVFTEDESE 273
L L + TY IGKEK+ + I G KV + K + L+ L + + + T D
Sbjct: 867 TLNPHALVVCGTYSIGKEKVFLAIADVLGSKVGMSQEKYKTLQCLNIPEINSLITTDMCS 926
Query: 274 TDVHVVGWNEIMVER----------GYDKVVGFVPTGWTYEVKRNKFA---VRSKDAFEI 320
+ VH++ +I + Y++++ F PTGWT+ K + A ++K I
Sbjct: 927 SLVHLLPMMQINFKGLQSHLKKCGGKYNQILAFRPTGWTHSNKFTRIADVIPQTKGNISI 986
Query: 321 HLVPYSEHSNYDELREYVKFLKPKRVIPTVGMDIEKLDSKHANKMRKYF 369
+ +PYSEHS+Y E++ +V++LKP+++IPTV + K S M KYF
Sbjct: 987 YGIPYSEHSSYLEMKRFVQWLKPQKIIPTVNVGTWKSRS----TMEKYF 1031
>sp|Q86KS1|DCR1_DICDI DNA cross-link repair 1 protein OS=Dictyostelium discoideum
GN=dclre1 PE=3 SV=1
Length = 920
Score = 217 bits (553), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 124/339 (36%), Positives = 188/339 (55%), Gaps = 27/339 (7%)
Query: 32 PPIPRTFPPS-KHVPNTRFLIDAFRYAADFSVSYFLSHFHSDHYTGLSPSWSKGIIFCSE 90
P + PPS K + T FL+D F+Y ++ YFL+HFHSDHY G++ +WS G I+C+E
Sbjct: 253 PTKEKKIPPSFKVIDGTNFLVDGFQYKSEDFTHYFLTHFHSDHYVGITKTWSFGNIYCTE 312
Query: 91 ITSRLLSQILNINPKFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNG---- 146
T +L+S L ++ ++I + I G +V + +NHCPG+ LF +P RN
Sbjct: 313 ETGKLVSHKLGVDQRYIVKCEWNKLIEIQGVKVAFLDSNHCPGSALILFIIPLRNKDGEI 372
Query: 147 -GFERYVHTGDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVV 205
G E +HTGDFR+ ++M P++ + ++LD TYC+P+++FP Q E ++ V ++V
Sbjct: 373 IGEESILHTGDFRYNQSMNNYPLL-KGRTISKLYLDNTYCDPQYVFPPQPEIIKQVASIV 431
Query: 206 NRVGGELNEGLQKRVLFLVATYVIGKEKILIEIFKKCGRKVCVDSRKMEVLRVLGYG-DS 264
+ N+G LFL TYVIGKE+IL+EI K+ G+ V V + K +L L D
Sbjct: 432 RKE----NDG---ETLFLFGTYVIGKERILLEIAKQEGKPVHVSNEKYAILCCLSTCLDI 484
Query: 265 GVFTEDESETDVHVVGWNEIMVE----------RGYDKVVGFVPTGWTYEVKRNKFAVRS 314
FT +E T V + + Y +V+GF PTGWT K + R
Sbjct: 485 NKFTTNELITPFRAVTMSMLSYHNMLSLLDSSNNKYKRVIGFRPTGWTQAKKSITYLNRG 544
Query: 315 KDAFEIHLVPYSEHSNYDELREYVKFLKPKRVIPTVGMD 353
F + V YSEHS+++ELR+ + +P ++IPTV D
Sbjct: 545 PTTF--YSVAYSEHSSFNELRDCIDHFRPTQIIPTVDCD 581
>sp|Q5QJC4|DCR1A_CHICK DNA cross-link repair 1A protein OS=Gallus gallus GN=DCLRE1A PE=1
SV=1
Length = 972
Score = 198 bits (503), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 117/360 (32%), Positives = 191/360 (53%), Gaps = 36/360 (10%)
Query: 39 PPSKHVPNTRFLIDAFRYAA-DFSVSYFLSHFHSDHYTGLSPSWSKGIIF---CSEITSR 94
P K +P T F +DAF+Y + +YFL+HFHSDHY GL+ K +F C++IT
Sbjct: 631 PFYKKIPGTGFTVDAFQYGEIEGCTAYFLTHFHSDHYCGLT----KNFVFPLYCNKITGN 686
Query: 95 LLSQILNINPKFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHT 154
L+ L + ++I LP+ +++G +V+L+ ANHCPGA LF +P +HT
Sbjct: 687 LVKSKLRVKEQYINVLPMDTECIVNGIKVLLLDANHCPGATMILFYLPSGTA----ILHT 742
Query: 155 GDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRVGGELNE 214
GDFR +M P + ++LDTTYC+P++ FP Q+E +++ VN +
Sbjct: 743 GDFRADPSMERYPALIG-QKIHTLYLDTTYCSPEYTFPSQQEVIQFAVNTAFEM-----V 796
Query: 215 GLQKRVLFLVATYVIGKEKILIEIFKKCGRKVCVDSRKMEVLRVL-GYGDSGVFTEDESE 273
L R L + TY IGKEK+ + I + G K + K + L+ L + + T +
Sbjct: 797 TLNPRTLVVCGTYSIGKEKVFLAIAEVLGSKASMSRDKYKTLQCLESAAVNSLITMNWDG 856
Query: 274 TDVHVVGWNEIMVE----------RGYDKVVGFVPTGWTYE---VKRNKFAVRSKDAFEI 320
T +H++ +I + +D+V+ F PTGWTY + +++ I
Sbjct: 857 TLLHILPMMQINFKGLQDHLNKFSENFDQVLAFKPTGWTYSDSCLSVMDIKPQTRGNITI 916
Query: 321 HLVPYSEHSNYDELREYVKFLKPKRVIPTVGMDIEKLDSKHANKMRKYFAGLVDEMASKK 380
+ +PYSEHS+Y E++ +V++LKP+++IPTV + D + + M K+F + E + K
Sbjct: 917 YGIPYSEHSSYLEMKRFVQWLKPQKIIPTVNVG----DWRARSLMEKHFRDWMIEGSGHK 972
>sp|Q10264|PSO2_SCHPO DNA cross-link repair protein pso2/snm1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pso2 PE=3 SV=3
Length = 560
Score = 196 bits (499), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 118/346 (34%), Positives = 178/346 (51%), Gaps = 41/346 (11%)
Query: 46 NTRFLIDAFRYAA-DFSVSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLLSQILNINP 104
N F +DAF Y A D +YFLSHFHSDHY GL+P W G I+CSE+T LL +++++
Sbjct: 192 NIPFAVDAFAYGAIDGVEAYFLSHFHSDHYGGLTPKWKHGPIYCSEVTGNLLINVMHVDE 251
Query: 105 KFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFCKTML 164
+++ L + P I G V ++ ANHCPG+ F+F+ N R +H GDFR K +
Sbjct: 252 QYVKRLKLNQPYNIMGITVYVLDANHCPGSAMFVFETLQSNQT-RRVLHCGDFRASKDHV 310
Query: 165 LQPVMNEFAGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRVGGELNEGLQKRVLFLV 224
+ PV+ E V+LDTTY NPK+ FP Q + VV + + R+L +V
Sbjct: 311 MHPVLRE-KTIHKVYLDTTYLNPKYTFPPQAD----VVQACADKAISIKKSTDSRLLVVV 365
Query: 225 ATYVIGKEKILIEIFKKCGRKVCVDSRKMEVLRVLGYGD-SGVFTEDESETDVHVVGWNE 283
+TY IGKEK+ + I K ++ V RKM +++ L D + T+D ++ VH+V
Sbjct: 366 STYSIGKEKVAVAIAKSLSSRIYVVPRKMHIIKQLENQDLIDLLTDDPTQASVHMVTMMG 425
Query: 284 I----------MVERGYDKVVGFVPTGWTYEVKRN----------------KF------A 311
I +DK++G+ TGWT++ N KF A
Sbjct: 426 IHPNSLLDYLEQYNSSFDKIIGYKVTGWTFQPLENRAQLSSSLDSIISRPPKFVEYDLRA 485
Query: 312 VR-SKDAFEIHLVPYSEHSNYDELREYVKFLKPKRVIPTVGMDIEK 356
+R S D + PYSEHS++ +L + + +IPTV + ++
Sbjct: 486 IRGSTDKVAAFVAPYSEHSSFYDLTMFCLSMNIGHIIPTVNVGSQR 531
>sp|B1L3V2|DNLI2_KORCO DNA ligase 2 OS=Korarchaeum cryptofilum (strain OPF8) GN=lig2 PE=3
SV=1
Length = 594
Score = 189 bits (479), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 136/471 (28%), Positives = 235/471 (49%), Gaps = 59/471 (12%)
Query: 715 YIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENIELN 774
+I +A+ ++ +EA G+++ + L N+F L+ P+ + VYL IA++ E IEL
Sbjct: 3 FIDVAKIYEKIEATTGRLEMIDYLKNLF---LSTPPEILDKIVYLTLGNIAASFEGIELG 59
Query: 775 IGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQEC---RQTQALLAPPPPLLIKDVY 831
+G L A+ A G + ++ + Y +LGD+G +A+ + Q+ L ++ V+
Sbjct: 60 VGEKLFLRALSLATGIPQERLEEEYPKLGDIGKLAEWAVSKKAAQSFFTED--LTVERVF 117
Query: 832 SMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQ 891
L K++ TG G+ K LI ++ + E +++ R + LR+G T+L AL++
Sbjct: 118 DTLSKVARATGEGAQDLKVRLIAGILSDAKPLEARYIARIVTEKLRLGVRDMTVLDALSE 177
Query: 892 AVVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMNKGI-GFSASTL 950
A + K ++KL+ YNI P + + + KGI G T+
Sbjct: 178 AFL-----------KGRAYRDKLER-------KYNIYPDIGKIAKVVAEKGIKGLDEITI 219
Query: 951 SMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGD 1010
++ G+P++PMLA+ ++++ + F E+KYDG+R QIH DG V+IFSR +
Sbjct: 220 TL--GIPVRPMLAQRLRSAEEIMEKIGPRIF-AEFKYDGERMQIHVWKDGKVKIFSRRLE 276
Query: 1011 ETTSRFPDLISIINEFCKPA--AGTFILDAEVVAIDRKNGCKIMSFQELSSRER--GGKD 1066
+ T +PD + E+ A +LD E VAI+ G +I+ FQEL R R G ++
Sbjct: 277 DITEPYPD----VREYVSKAVEGHEVVLDCETVAINPDTG-EILPFQELMHRRRKYGVEE 331
Query: 1067 SVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYD-EKMGYFQYAKEMTV 1125
++ T +V + FD+++ +G +LL L RRK LK++ + EK QY +
Sbjct: 332 AMKTYPTV-----TYAFDLLYLDGRELLDEQLDDRRKILKEILKENEKARLVQYEE---- 382
Query: 1126 EGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
D ++ ++ F E A+ EG++VK D + Y R SW
Sbjct: 383 --------IDGNVEELERFFEHAVEMGTEGLVVK--DPKSIYQAGVRGWSW 423
>sp|A8MDU6|DNLI_CALMQ DNA ligase OS=Caldivirga maquilingensis (strain ATCC 700844 / DSMZ
13496 / JCM 10307 / IC-167) GN=lig PE=3 SV=1
Length = 603
Score = 179 bits (455), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 140/479 (29%), Positives = 222/479 (46%), Gaps = 66/479 (13%)
Query: 715 YIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAV-YLCTNKIASNHENIEL 773
+ ++ LVEA + +++ SLLA +P V+ V Y + + E +EL
Sbjct: 7 FSNIVSVLKLVEATTQR----TVMAKALSSLLAKTPPQVIDKVIYFLLGSLRPDWEGVEL 62
Query: 774 NIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQAL------------LAP 821
+ L AI A G ++ ++Y +LGD G+VA+ + + P
Sbjct: 63 GLAERLTLRAISMATGLPIRQVEELYKKLGDAGEVAKRAAEIKRSKGGGGTIFDFIDTGP 122
Query: 822 PPPLLIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAM 881
L I VY L I+ +G G+ K L+ +L+ E K++ R ++ LR+G
Sbjct: 123 KRRLTISKVYDTLMAIAKASGEGAQDTKVKLLSSLLTDAEPDEAKYITRFVIGRLRLGVA 182
Query: 882 MRTILPALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMNK 941
TIL AL+ A +N +L EK AY++ P L + +L
Sbjct: 183 DMTILDALSDAFDVN-----------RDLLEK----------AYHVYPDLGKIAKTLAEG 221
Query: 942 GIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGT 1001
G + + + PGVPI+PMLA+ + ++L A CE+KYDG+R QIHKL DGT
Sbjct: 222 G-EEAVKAIKVTPGVPIQPMLAERLSSPKEILNKLGGVAI-CEFKYDGERMQIHKLKDGT 279
Query: 1002 VRIFSRNGDETTSRFPDLISIINEFCKPA--AGTFILDAEVVAIDRKNGCKIMSFQELSS 1059
V+IFSR ++ T+++PD + E+ + A A FI++ E VAID G + FQEL
Sbjct: 280 VKIFSRRMEDITNQYPD----VAEYAREAIDAEEFIVEGEGVAIDPDTG-EFKPFQELMH 334
Query: 1060 RERGGKDSVITIKSV--KVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYF 1117
R+R IK + I +++FD+M+ NG+ L L R+K L + +
Sbjct: 335 RKRKH-----NIKEAIEEYPINLYLFDVMYVNGQDLTDLPLPDRKKVLFSIIKPHEH--- 386
Query: 1118 QYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
V D +T D + F +A+ S CEG++ KS+ + + Y R W
Sbjct: 387 -------VHHADWIITDDA--DSLEKFFLDAISSGCEGVMCKSVKLGSVYEMGARGWLW 436
>sp|Q6L195|DNLI_PICTO DNA ligase OS=Picrophilus torridus (strain ATCC 700027 / DSM 9790 /
JCM 10055 / NBRC 100828) GN=lig PE=3 SV=2
Length = 585
Score = 179 bits (454), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 135/462 (29%), Positives = 225/462 (48%), Gaps = 48/462 (10%)
Query: 718 LARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENIELNIGG 777
+A F +E +++ S+L +F+ S DD+ VYL K+ ++ IEL +
Sbjct: 6 VASYFSRMEETTKRLELTSILAELFKR----SGDDLKKLVYLVQGKLMPDYLGIELGLSD 61
Query: 778 SLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQALLAP--PPPLLIKDVYSMLC 835
L+ ++ +A G + I +++RLGDLG A+E + + P L + VY+ L
Sbjct: 62 KLIIKSLSKASGRSEEDINRIFSRLGDLGSTAEEI-SSSGIQRPLLKESLTVDYVYNQLI 120
Query: 836 KISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQAVVM 895
KIS TG GS K ++L+ + E+K++ R + LR+G TIL L +A
Sbjct: 121 KISGYTGHGSIKTKMDAYIDLLINSGPMEIKYITRIITGKLRLGVADSTILDGLIEA--- 177
Query: 896 NSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMNKGIGFSASTLSMVPG 955
FS + ++++ AYN P L + +LM I VP
Sbjct: 178 -----FSEKKYADDIE-----------TAYNFHPDLGYIAENLMMGNIN-ELLNAGPVPL 220
Query: 956 VPIKPMLAKITNGVPQVL-KLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTS 1014
+P K MLA+ + + K+ N ++ EYKYDG R Q+H + G ++IFSR +ETTS
Sbjct: 221 IPFKVMLAERLQSISDIRNKMGHNASY--EYKYDGLRTQLH-FLKGGIKIFSRGLEETTS 277
Query: 1015 RFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSV 1074
FPD++ + + + I+D E V + + G ++ FQ +S R G+ +T K+
Sbjct: 278 SFPDIVQNFKSYY--SFDSCIIDGESVPYNPETG-ELYPFQMVSKRR--GRKYELTEKTR 332
Query: 1075 KVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTS 1134
+V I +F+FDI++ NG+ L+ +RR L+ F + + YF+ AK + + + +
Sbjct: 333 EVPIVMFIFDILYLNGKSLVNLPYPERRSILEKNFKENE--YFKLAKRIVSDDEHD---- 386
Query: 1135 DVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
I F E ++ CEGI+ KS +D+ Y R W
Sbjct: 387 ------IMKFFERSIEEGCEGIVAKSNGIDSIYRAGARGWLW 422
>sp|Q02093|DNLI_ACIAM DNA ligase OS=Acidianus ambivalens GN=lig PE=3 SV=1
Length = 600
Score = 174 bits (441), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 144/469 (30%), Positives = 225/469 (47%), Gaps = 52/469 (11%)
Query: 718 LARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENI-ELNIG 776
+A FD +E +++ S+L ++F+ D V VY+ K+ + + EL IG
Sbjct: 6 IAEYFDRLEKISSRLQLTSLLADLFKKTDKNVIDKV---VYIIQGKLWPDFLGMPELGIG 62
Query: 777 GSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQ---ALLA------PPPPLLI 827
+ A+ A + +I MY +GDLG VA + +Q Q ++LA PL +
Sbjct: 63 EKFLIRALSIATSVSDDEIEKMYKSVGDLGQVAFDIKQKQQSASILAFLGAQKASKPLTV 122
Query: 828 KDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILP 887
+ VY L K++ TG GS K L+ L+ E K+LVR + LR+G TIL
Sbjct: 123 EKVYDDLAKVATSTGEGSRDIKIRLLAGLLKDASPLEAKYLVRFVDGRLRVGIGDATILD 182
Query: 888 ALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMNKGIGFSA 947
ALA + F G +N + ++ AYN+ L + L N GI
Sbjct: 183 ALA--------ITF---GGGQNFRPIVE-------RAYNLRADLGNIAKILANGGIE-QL 223
Query: 948 STLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSR 1007
+ PG+PI+PMLA+ + ++L N A +YKYDG+R QIHK D + IFSR
Sbjct: 224 KNIKPQPGIPIRPMLAERLSDPAEMLSKVGNIAL-VDYKYDGERGQIHKAGD-KIFIFSR 281
Query: 1008 NGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDS 1067
+ T+++PD+ I+++ K FI++ E++ +D + G ++ FQEL R+R D
Sbjct: 282 RLENITNQYPDVAEYISKYVK--GNEFIVEGEIIPVDPETG-EMRPFQELMHRKRKS-DI 337
Query: 1068 VITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEG 1127
IK V+ VF+FD+M+ GE L +RRK L+ + D Y A + +
Sbjct: 338 HEAIKEYPVN--VFLFDLMYYEGEDYTVKPLSERRKKLESIVEDND--YVHIATHIITD- 392
Query: 1128 DDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
++ K+ F +A+ EG++VKSL DA Y R W
Sbjct: 393 ---------NVEKLKEFFYQAISEGAEGVMVKSLAPDAIYQAGSRGWLW 432
>sp|A3DP49|DNLI_STAMF DNA ligase OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 /
F1) GN=lig PE=3 SV=2
Length = 597
Score = 173 bits (438), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 137/476 (28%), Positives = 227/476 (47%), Gaps = 55/476 (11%)
Query: 714 PYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENI-E 772
P+ LA TF+ +E + + +L N+F+ P+ + VYL ++ + + + E
Sbjct: 2 PFRELADTFERIEIITSRTQMTVLLVNLFKKT---PPEIIDKVVYLLQGRLWPDWKGLPE 58
Query: 773 LNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQ---------TQALLAPPP 823
L +G ++ AI A + S++ +Y LGDLG A++ + ++LA P
Sbjct: 59 LGVGEKMLIKAIALATQSTESEVESLYKSLGDLGKAAEKLKAIYEEKLKKGAMSILAFVP 118
Query: 824 ---PLLIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGA 880
L + VY L ++++ TG GS K L+ L+ KE K+++R + LR+G
Sbjct: 119 VKRELTVSQVYETLSRVALATGEGSRDIKLKLLAGLLSDASPKEAKYIIRFVEGRLRLGI 178
Query: 881 MMRTILPALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMN 940
TI+ ALA + + + E+ AYN+ L + L
Sbjct: 179 GDATIMDALA--------IVYGGGAHARPIVER----------AYNLRADLGHIAKILAT 220
Query: 941 KGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDG 1000
+G+ V G+PI+PMLA+ N ++LK AF EYKYDG+RAQIHKL D
Sbjct: 221 QGLNALKGIKPQV-GIPIRPMLAERLNNPVEILKKVGGIAF-VEYKYDGERAQIHKLGD- 277
Query: 1001 TVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSR 1060
+ I+SR + T ++PD++ ++ K A I++ E+VA D G ++ FQEL R
Sbjct: 278 KIWIYSRRLENITHQYPDVVDYARKYIK--ANEAIVEGEIVAYDPDTG-ELRPFQELMHR 334
Query: 1061 ERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYA 1120
+R D I IK V V V++FD+++ +GE L +RR L ++ E+ FQ A
Sbjct: 335 KR-KHDIHIAIKEVPVK--VYLFDLLYVDGEDYTLKPLPERRAKLVEII--EQTETFQIA 389
Query: 1121 KEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
+ + D ++ F +A+ EG+++K+L +A Y R W
Sbjct: 390 EYIRTNNPD----------ELEKFFLKAIEDGAEGVMIKALHKNAIYQAGTRGWLW 435
>sp|A4WH24|DNLI_PYRAR DNA ligase OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321)
GN=lig PE=3 SV=1
Length = 584
Score = 171 bits (434), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 135/464 (29%), Positives = 223/464 (48%), Gaps = 54/464 (11%)
Query: 718 LARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENIELNIGG 777
L + VE+ + + +L ++F+ L P+++ +YL + E +EL +G
Sbjct: 6 LVKALAAVESTTQRSVMVKLLASLFKKAL---PEEIDKVIYLILGDLRPPWEGLELGVGE 62
Query: 778 SLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQ---ALLA--PPPPLLIKDVYS 832
L A+ +A GT+++++ MY + GD+G+ A+ + LLA PL + +VY
Sbjct: 63 KLCLRALAKATGTSQAELESMYKKTGDIGEAARRALASSKRPGLLAFGSQKPLEVSEVYD 122
Query: 833 MLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQA 892
L K++ TG G+ K +L+ +L +E K++ R +V LR+G TI+ ALA A
Sbjct: 123 ALIKVARATGEGAQDMKIALLSSLFARSSPEEGKYIARFVVGKLRLGVADMTIIEALADA 182
Query: 893 VVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMNKGIGFSASTLSM 952
+ KE L+ AY++ P L L + + G + +
Sbjct: 183 YGVR--------------KEDLE-------RAYHVYPDLGHLAKLVAS---GKPLDEVKV 218
Query: 953 VPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDET 1012
PGVP+ PMLA+ + ++L A CEYKYDG+RAQIH G VRIFSR ++
Sbjct: 219 TPGVPVLPMLAQRLSSSSEILAKLGGAAI-CEYKYDGERAQIHISQSG-VRIFSRRLEDI 276
Query: 1013 TSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIK 1072
T +PD++ + E +A IL+ E+VA+D G +++ FQEL R+R K V
Sbjct: 277 THAYPDVVKAVREAV--SAREAILEGEIVAVDPDTG-EMLPFQELMHRKR--KHEVAAAM 331
Query: 1073 SVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCL 1132
+ + +++FDI++ +GE L L RR L ++ ++ Q AK + D
Sbjct: 332 EMYPTV-LYLFDIVYVDGEDLTNEPLIYRRVKLSEIVHESDK--VQIAKWQMFDDPDT-- 386
Query: 1133 TSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
++ F EA+ EG+I KS + Y R +W
Sbjct: 387 --------VDVFFHEAVSVGTEGLICKSPTSE--YEMGARGWNW 420
>sp|Q9HJ26|DNLI_THEAC DNA ligase OS=Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728
/ JCM 9062 / NBRC 15155 / AMRC-C165) GN=lig PE=3 SV=1
Length = 588
Score = 171 bits (432), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 136/462 (29%), Positives = 225/462 (48%), Gaps = 48/462 (10%)
Query: 718 LARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPA-VYLCTNKIASNHENIELNIG 776
+A F+ +E+ +++ +L N+ + DD LP +YL K+ ++ IE +
Sbjct: 6 VADAFEKMESTTKRLELTDLLVNLLKE-----ADDDLPLLIYLLEGKLGPDYLGIETQMS 60
Query: 777 GSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQALLA-PPPPLLIKDVYSMLC 835
L+ A+ A + +I Y + GD+G +A+E + ++L + + +K ++ L
Sbjct: 61 DKLIIKALSVASNISEDEIAKEYAKAGDIGTIAKEIAEKRSLRSLVQEEMTVKYIHDTLM 120
Query: 836 KISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQAVVM 895
K++ TGSGST + ++L + KE+ ++ R + LRIG TIL A+ +A
Sbjct: 121 KMARTTGSGSTKARVDAYMDLFLNSTPKEIMYITRIITGKLRIGISDATILDAIVKA--- 177
Query: 896 NSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMNKGIGFSASTLSMVPG 955
F+ E E+++ A+N P L I S + KG + L P
Sbjct: 178 -----FADEKYSEDIE-----------NAFNFHPDLG-YIASELRKGNIDAILKLGPTPM 220
Query: 956 VPIKPMLAKITNGVPQVLKLFQNK-AFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTS 1014
+P K MLA+ V ++L+ + AF EYKYDG R + H + G VR+FSR +ETT+
Sbjct: 221 IPFKVMLAERLRSVEEILEKMGGRCAF--EYKYDGMRTETH-IERGKVRLFSRGNEETTN 277
Query: 1015 RFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSV 1074
+FPD+ +E K + ILD E V D G ++ FQ +S R RG K + + S
Sbjct: 278 QFPDITKAASETFK--VDSAILDGEAVPYDPDTG-ELYPFQVISHR-RGRKYDLDKVSS- 332
Query: 1075 KVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTS 1134
++ I VF+FDI++ NG L +RRK L+ +F + F+ AK +E D
Sbjct: 333 EIPITVFLFDIVYLNGRDLSKTPYTERRKILESIFTESDS--FRLAKR--IESGDP---- 384
Query: 1135 DVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
++++ F A+ CEG++ KS D+ Y R W
Sbjct: 385 ----AEVHRFFNSAIEDGCEGLVAKSTSPDSFYKAGARGWLW 422
>sp|A3MS62|DNLI_PYRCJ DNA ligase OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1)
GN=lig PE=3 SV=1
Length = 583
Score = 171 bits (432), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 132/464 (28%), Positives = 222/464 (47%), Gaps = 54/464 (11%)
Query: 718 LARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENIELNIGG 777
LA+ VE+ + + +L ++F+ P+++ VY + E +EL +
Sbjct: 6 LAKVLAAVESTTQRTTMVKLLTSLFKKA---KPEEIDKIVYFILGDLRPPWEGVELGVAE 62
Query: 778 SLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQEC-----RQTQALLAPPPPLLIKDVYS 832
L AI +A G + +++ Y + GD+G+VA+ R T A PL + +VY
Sbjct: 63 KLCIRAISKATGLSAAELEGWYKKSGDVGEVARRALAAGKRPTLLAFAQQKPLEVAEVYD 122
Query: 833 MLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQA 892
L K++ G G+ K SL+ +L +E K++ R +V LR+G T++ AL++A
Sbjct: 123 TLLKVAKAAGEGAQDLKVSLLSSLFSRASPEEAKYIARFVVGKLRLGVADMTLIEALSEA 182
Query: 893 VVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMNKGIGFSASTLSM 952
++ KE L+ AY++ P L L + G + +
Sbjct: 183 FGVS--------------KEGLE-------RAYHVYPDLGRLARHVAE---GRPLEEIKI 218
Query: 953 VPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDET 1012
PGVP+ PMLA+ + ++L A CEYKYDG+RAQIH L +G+V+IFSR ++
Sbjct: 219 TPGVPVLPMLAQRLSSASEILAKLGGTAI-CEYKYDGERAQIH-LREGSVKIFSRRLEDI 276
Query: 1013 TSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIK 1072
T +PD+ + E K A IL+ E+VA+D G +++ FQEL R+R D ++
Sbjct: 277 THAYPDVAKAVKEAVK--AREAILEGEIVAVDPDTG-EMLPFQELMHRKR-KHDVAEAME 332
Query: 1073 SVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCL 1132
+ +++FD+++ +GE L L RR L ++ E+ G AK +G ++
Sbjct: 333 AYPA--VLYLFDLLYVDGEDLTTQPLIYRRLRLSEVV--EEGGDVYIAKWGMFDGAED-- 386
Query: 1133 TSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
++ F EA+ EG+I KS + Y R +W
Sbjct: 387 --------VDLFFHEAVSLGTEGLICKS--PTSTYEMGARGWNW 420
>sp|B1YA52|DNLI_PYRNV DNA ligase OS=Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 /
V24Sta) GN=lig PE=3 SV=1
Length = 584
Score = 170 bits (430), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 130/449 (28%), Positives = 217/449 (48%), Gaps = 54/449 (12%)
Query: 718 LARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENIELNIGG 777
L +T VE+ + + +L ++ + PD+V VY + E +EL +
Sbjct: 6 LVKTLAAVESTTQRTTMVKLLTSLLKRA---RPDEVDKIVYFVLGDLKPPWEGVELGVAE 62
Query: 778 SLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQEC---RQTQALLA--PPPPLLIKDVYS 832
L A+ +A GT S++ +Y R GD+G+ A+ + LLA PL + +VY
Sbjct: 63 KLCLRAVSKAAGTPLSELEAVYKRTGDVGEAARRALSAAKRPGLLAFGQQKPLEVSEVYD 122
Query: 833 MLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQA 892
L K++ G G+ K SL+ +L +E K++ R +V LR+G T+L AL++A
Sbjct: 123 TLLKVAKAAGEGAQDMKISLLASLFARATPEEAKYIARFVVGKLRLGVADMTLLEALSEA 182
Query: 893 VVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMNKGIGFSASTLSM 952
+ KE L+ AY++ P + L + G + +
Sbjct: 183 FGVG--------------KEALE-------RAYHVWPDMGKLARHVAE---GRPLEEVKI 218
Query: 953 VPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDET 1012
PGVP+ PMLA+ + ++L A CEYKYDG+RAQIH + G+V+IFSR ++
Sbjct: 219 TPGVPVLPMLAQRLSSASEILAKLGGAA-VCEYKYDGERAQIH-ISGGSVKIFSRRLEDI 276
Query: 1013 TSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIK 1072
T +PD++ + E AAG IL+ E+VA+D G ++ FQEL R+R + ++
Sbjct: 277 THAYPDVVKAVKESV--AAGEAILEGEIVAVDPDTG-DMLPFQELMHRKR-KHEVAAAVE 332
Query: 1073 SVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYD-EKMGYFQYAKEMTVEGDDNC 1131
S + +FD+++ +GE L G L RR L ++ ++ EK+ ++ DD
Sbjct: 333 SYPA--VLNLFDVLYLDGEDLTGEPLIYRRLRLSEVVHETEKVSIARWRL-----FDDP- 384
Query: 1132 LTSDVSLSKINNFLEEALHSSCEGIIVKS 1160
+++ F EA+ EG++ KS
Sbjct: 385 -------GEVDVFFHEAVSLGMEGLVCKS 406
>sp|O93723|DNLI_PYRAE DNA ligase OS=Pyrobaculum aerophilum (strain ATCC 51768 / IM2 / DSM
7523 / JCM 9630 / NBRC 100827) GN=lig PE=3 SV=2
Length = 584
Score = 169 bits (429), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 132/457 (28%), Positives = 215/457 (47%), Gaps = 70/457 (15%)
Query: 718 LARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENIELNIGG 777
L + +EA + + +L ++F+ SP++V VY + E +EL +
Sbjct: 6 LVKALAAIEATTQRTTMVKLLVSLFKKA---SPEEVGKIVYFILGDLRPPWEGVELGVAE 62
Query: 778 SLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQEC---RQTQALLA--PPPPLLIKDVYS 832
L A+ +A G S++ +Y + GD+G+ A+ + LLA PL + +VY
Sbjct: 63 KLCLRAVSKATGAAVSELEALYKKTGDVGEAARRALAASKRPGLLAFGSQKPLEVSEVYD 122
Query: 833 MLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQA 892
L K++ TG G+ K +L+ +L +E K++ R +V LR+G TI+ AL+ A
Sbjct: 123 TLLKVARATGEGAQDMKVALLSSLFARATPEEGKYIARFVVGKLRLGVADMTIIEALSDA 182
Query: 893 VVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMNKGIGFSASTLSM 952
+N KE L+ +AY+I P L L + G + +
Sbjct: 183 YGVN--------------KEALE-------KAYHIYPDLGRLAKHVAE---GKPLDEIRI 218
Query: 953 VPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDET 1012
PGVP+ PMLA+ + ++L A CEYKYDG+RAQIH L G V+IFSR ++
Sbjct: 219 TPGVPVLPMLAQRLSSASEILAKLGGSAI-CEYKYDGERAQIH-LTPGGVKIFSRRLEDI 276
Query: 1013 TSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIK 1072
T +PD++ + E +A IL+ E+VA+D G ++ FQEL R+R K V T
Sbjct: 277 THAYPDVVKAVKEAV--SAKEAILEGEIVAVDPDTG-DMLPFQELMHRKR--KHDVATAV 331
Query: 1073 SVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCL 1132
+ + +++FD+++ +GE L L RR L ++ C
Sbjct: 332 ELYPTV-LYLFDVLYVDGEDLTEEPLIYRRVRLSEIV---------------------CE 369
Query: 1133 TSDVSLSK---------INNFLEEALHSSCEGIIVKS 1160
T VS++K ++ F E++ EG+I KS
Sbjct: 370 TDKVSIAKWRIFDNAEAVDVFFHESVSMGTEGLICKS 406
>sp|C3N834|DNLI_SULIY DNA ligase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone
#1) GN=lig PE=3 SV=1
Length = 601
Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 142/469 (30%), Positives = 226/469 (48%), Gaps = 53/469 (11%)
Query: 718 LARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVL-PAVYLCTNKIASNHENI-ELNI 775
+A FD +E KI + L + LL+ S ++ VY+ K+ + EL I
Sbjct: 6 IAEYFDKLE----KISSRLQLTALLADLLSKSDKAIIDKVVYIIQGKLWPDFLGYPELGI 61
Query: 776 GGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECR---QTQALL-----APPPPLLI 827
G + AI A T+ + + ++Y +GDLG+VA+ + Q+ +L + L +
Sbjct: 62 GEKFLIKAISIATNTDENSVENLYKSIGDLGEVARRLKSKQQSTGILGFLGTSSKESLKV 121
Query: 828 KDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILP 887
+VYS L K+++ TG GS K L+ L+ E KFLVR + LR+G T+L
Sbjct: 122 DEVYSTLSKVALTTGEGSRDLKIRLLAGLLKKADPLEAKFLVRFVEGRLRVGIGDATVLD 181
Query: 888 ALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMNKGIGFSA 947
A+A A QS S AYN+ L + ++ KGI +
Sbjct: 182 AMAIAFGGG------------------QSASEIVERAYNLRADLGNIAKIIVEKGIE-AL 222
Query: 948 STLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSR 1007
TL G+PI+PMLA+ + ++LK A +YKYDG+RAQIHK D + IFSR
Sbjct: 223 KTLKPEVGIPIRPMLAERLSNPEEILKKVGGSAL-VDYKYDGERAQIHK-KDDKIFIFSR 280
Query: 1008 NGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDS 1067
+ TS++PD++ I+++ + FI++ E+VA+D ++G ++ SFQEL R+R D
Sbjct: 281 RLENITSQYPDVVEYISKYTE--GKEFIIEGEIVAVDPESG-EMRSFQELMHRKRKS-DI 336
Query: 1068 VITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEG 1127
IK V+ VF+FD+M+ L RRK L+ + + Y + A + V
Sbjct: 337 YEAIKEYPVN--VFLFDLMYYEDVDYTTKPLEVRRKLLESIV--KPNDYVKIAHHIQVN- 391
Query: 1128 DDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
++ + +F A+ EG++VK++ DA Y R W
Sbjct: 392 ---------NIEDLKSFFYRAISEGGEGVMVKAIGKDAIYQAGARGWLW 431
>sp|C3NF77|DNLI_SULIN DNA ligase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone
#2) GN=lig PE=3 SV=1
Length = 601
Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 143/469 (30%), Positives = 225/469 (47%), Gaps = 53/469 (11%)
Query: 718 LARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVL-PAVYLCTNKIASNHENI-ELNI 775
+A FD +E KI + L + LL+ S ++ VY+ K+ + EL I
Sbjct: 6 IAEYFDKLE----KISSRLQLTALLADLLSKSDKAIIDKVVYIIQGKLWPDFLGYPELGI 61
Query: 776 GGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECR---QTQALL-----APPPPLLI 827
G + AI A T+ + + ++Y +GDLG+VA+ + Q+ +L + L +
Sbjct: 62 GEKFLIKAISIATNTDENSVENLYKSIGDLGEVARRLKSKQQSTGILGFLGTSSKESLKV 121
Query: 828 KDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILP 887
VYS L K+++ TG GS K L+ L+ E KFLVR + LR+G T+L
Sbjct: 122 DKVYSTLSKVALTTGEGSRDLKIRLLAGLLKKADPLEAKFLVRFVEGRLRVGIGDATVLD 181
Query: 888 ALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMNKGIGFSA 947
A+A A QS S AYN+ L + ++ KGI +
Sbjct: 182 AMAIAFGGG------------------QSASEIVERAYNLRADLGNIAKIIVEKGIE-AL 222
Query: 948 STLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSR 1007
TL G+PI+PMLA+ + ++LK A +YKYDG+RAQIHK D + IFSR
Sbjct: 223 KTLKPEVGIPIRPMLAERLSNPEEILKKVGGSAL-VDYKYDGERAQIHK-KDDKIFIFSR 280
Query: 1008 NGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDS 1067
+ TS++PD++ I+++ + FI++ E+VA+D ++G +I SFQEL R+R D
Sbjct: 281 RLENITSQYPDVVEYISKYTE--GKEFIIEGEIVAVDPESG-EIRSFQELMHRKRKS-DI 336
Query: 1068 VITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEG 1127
IK V+ VF+FD+M+ L RRK L+ + + Y + A + V
Sbjct: 337 YEAIKEYPVN--VFLFDLMYYEDVDYTTKPLEVRRKLLESIV--KPNDYVKIAHHIQVN- 391
Query: 1128 DDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
++ + +F A+ EG++VK++ DA Y R W
Sbjct: 392 ---------NVEDLKSFFYRAISEGGEGVMVKAIGKDAIYQAGARGWLW 431
>sp|C3MYD2|DNLI_SULIM DNA ligase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1)
GN=lig PE=3 SV=1
Length = 601
Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 142/469 (30%), Positives = 226/469 (48%), Gaps = 53/469 (11%)
Query: 718 LARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVL-PAVYLCTNKIASNHENI-ELNI 775
+A FD +E KI + L + LL+ S ++ VY+ K+ + EL I
Sbjct: 6 IAEYFDKLE----KISSRLQLTALLADLLSKSDKAIIDKVVYIIQGKLWPDFLGYPELGI 61
Query: 776 GGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECR---QTQALL-----APPPPLLI 827
G + AI A T+ + + ++Y +GDLG+VA+ + Q+ +L + L +
Sbjct: 62 GEKFLIKAISIATNTDENSVENLYKSIGDLGEVARRLKSKQQSTGILGFLGTSSKESLKV 121
Query: 828 KDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILP 887
+VYS L K+++ TG GS K L+ L+ E KFLVR + LR+G T+L
Sbjct: 122 DEVYSTLSKVALTTGEGSRDLKIRLLAGLLKKADPLEAKFLVRFVEGRLRVGIGDATVLD 181
Query: 888 ALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMNKGIGFSA 947
A+A A QS S AYN+ L + ++ KGI +
Sbjct: 182 AMAIAFGGG------------------QSASEIVERAYNLRADLGNIAKIIVEKGIE-AL 222
Query: 948 STLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSR 1007
TL G+PI+PMLA+ + ++LK A +YKYDG+RAQIHK D + IFSR
Sbjct: 223 KTLKPEVGIPIRPMLAERLSNPEEILKKVGGSAL-VDYKYDGERAQIHK-KDDKIFIFSR 280
Query: 1008 NGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDS 1067
+ TS++PD++ I+++ + FI++ E+VA+D ++G ++ SFQEL R+R D
Sbjct: 281 RLENITSQYPDVVEYISKYTE--GKEFIIEGEIVAVDPESG-EMRSFQELMHRKRKS-DI 336
Query: 1068 VITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEG 1127
IK V+ VF+FD+M+ L RRK L+ + + Y + A + V
Sbjct: 337 YEAIKEYPVN--VFLFDLMYYEDVDYTTKPLEVRRKLLESIV--KPNDYVKIAHHIQVN- 391
Query: 1128 DDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
++ + +F A+ EG++VK++ DA Y R W
Sbjct: 392 ---------NVEDLKSFFYRAISEGGEGVMVKAIGKDAIYQAGARGWLW 431
>sp|C3MJ14|DNLI_SULIL DNA ligase OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1)
GN=lig PE=3 SV=1
Length = 601
Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 142/469 (30%), Positives = 226/469 (48%), Gaps = 53/469 (11%)
Query: 718 LARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVL-PAVYLCTNKIASNHENI-ELNI 775
+A FD +E KI + L + LL+ S ++ VY+ K+ + EL I
Sbjct: 6 IAEYFDKLE----KISSRLQLTALLADLLSKSDKAIIDKVVYIIQGKLWPDFLGYPELGI 61
Query: 776 GGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECR---QTQALL-----APPPPLLI 827
G + AI A T+ + + ++Y +GDLG+VA+ + Q+ +L + L +
Sbjct: 62 GEKFLIKAISIATNTDENSVENLYKSIGDLGEVARRLKSKQQSTGILGFLGTSSKESLKV 121
Query: 828 KDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILP 887
+VYS L K+++ TG GS K L+ L+ E KFLVR + LR+G T+L
Sbjct: 122 DEVYSTLSKVALTTGEGSRDLKIRLLAGLLKKADPLEAKFLVRFVEGRLRVGIGDATVLD 181
Query: 888 ALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMNKGIGFSA 947
A+A A QS S AYN+ L + ++ KGI +
Sbjct: 182 AMAIAFGGG------------------QSASEIVERAYNLRADLGNIAKIIVEKGIE-AL 222
Query: 948 STLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSR 1007
TL G+PI+PMLA+ + ++LK A +YKYDG+RAQIHK D + IFSR
Sbjct: 223 KTLKPEVGIPIRPMLAERLSNPEEILKKVGGSAL-VDYKYDGERAQIHK-KDDKIFIFSR 280
Query: 1008 NGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDS 1067
+ TS++PD++ I+++ + FI++ E+VA+D ++G ++ SFQEL R+R D
Sbjct: 281 RLENITSQYPDVVEYISKYTE--GKEFIIEGEIVAVDPESG-EMRSFQELMHRKRKS-DI 336
Query: 1068 VITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEG 1127
IK V+ VF+FD+M+ L RRK L+ + + Y + A + V
Sbjct: 337 YEAIKEYPVN--VFLFDLMYYEDVDYTTKPLEVRRKLLESIV--KPNDYVKIAHHIQVN- 391
Query: 1128 DDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
++ + +F A+ EG++VK++ DA Y R W
Sbjct: 392 ---------NVEDLKSFFYRAISEGGEGVMVKAIGKDAIYQAGARGWLW 431
>sp|C4KIZ2|DNLI_SULIK DNA ligase OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3)
GN=lig PE=3 SV=1
Length = 601
Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 142/469 (30%), Positives = 226/469 (48%), Gaps = 53/469 (11%)
Query: 718 LARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVL-PAVYLCTNKIASNHENI-ELNI 775
+A FD +E KI + L + LL+ S ++ VY+ K+ + EL I
Sbjct: 6 IAEYFDKLE----KISSRLQLTALLADLLSKSDKAIIDKVVYIIQGKLWPDFLGYPELGI 61
Query: 776 GGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECR---QTQALL-----APPPPLLI 827
G + AI A T+ + + ++Y +GDLG+VA+ + Q+ +L + L +
Sbjct: 62 GEKFLIKAISIATNTDENSVENLYKSIGDLGEVARRLKSKQQSTGILGFLGTSSKESLKV 121
Query: 828 KDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILP 887
+VYS L K+++ TG GS K L+ L+ E KFLVR + LR+G T+L
Sbjct: 122 DEVYSTLSKVALTTGEGSRDLKIRLLAGLLKKADPLEAKFLVRFVEGRLRVGIGDATVLD 181
Query: 888 ALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMNKGIGFSA 947
A+A A QS S AYN+ L + ++ KGI +
Sbjct: 182 AMAIAFGGG------------------QSASEIVERAYNLRADLGNIAKIIVEKGIE-AL 222
Query: 948 STLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSR 1007
TL G+PI+PMLA+ + ++LK A +YKYDG+RAQIHK D + IFSR
Sbjct: 223 KTLKPEVGIPIRPMLAERLSNPEEILKKVGGSAL-VDYKYDGERAQIHK-KDDKIFIFSR 280
Query: 1008 NGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDS 1067
+ TS++PD++ I+++ + FI++ E+VA+D ++G ++ SFQEL R+R D
Sbjct: 281 RLENITSQYPDVVEYISKYTE--GKEFIIEGEIVAVDPESG-EMRSFQELMHRKRKS-DI 336
Query: 1068 VITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEG 1127
IK V+ VF+FD+M+ L RRK L+ + + Y + A + V
Sbjct: 337 YEAIKEYPVN--VFLFDLMYYEDVDYTTKPLEVRRKLLESIV--KPNDYVKIAHHIQVN- 391
Query: 1128 DDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
++ + +F A+ EG++VK++ DA Y R W
Sbjct: 392 ---------NVEDLKSFFYRAISEGGEGVMVKAIGKDAIYQAGARGWLW 431
>sp|C3MZR1|DNLI_SULIA DNA ligase OS=Sulfolobus islandicus (strain M.16.27) GN=lig PE=3 SV=1
Length = 601
Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 142/469 (30%), Positives = 226/469 (48%), Gaps = 53/469 (11%)
Query: 718 LARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVL-PAVYLCTNKIASNHENI-ELNI 775
+A FD +E KI + L + LL+ S ++ VY+ K+ + EL I
Sbjct: 6 IAEYFDKLE----KISSRLQLTALLADLLSKSDKAIIDKVVYIIQGKLWPDFLGYPELGI 61
Query: 776 GGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECR---QTQALL-----APPPPLLI 827
G + AI A T+ + + ++Y +GDLG+VA+ + Q+ +L + L +
Sbjct: 62 GEKFLIKAISIATNTDENSVENLYKSIGDLGEVARRLKSKQQSTGILGFLGTSSKESLKV 121
Query: 828 KDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILP 887
+VYS L K+++ TG GS K L+ L+ E KFLVR + LR+G T+L
Sbjct: 122 DEVYSTLSKVALTTGEGSRDLKIRLLAGLLKKADPLEAKFLVRFVEGRLRVGIGDATVLD 181
Query: 888 ALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMNKGIGFSA 947
A+A A QS S AYN+ L + ++ KGI +
Sbjct: 182 AMAIAFGGG------------------QSASEIVERAYNLRADLGNIAKIIVEKGIE-AL 222
Query: 948 STLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSR 1007
TL G+PI+PMLA+ + ++LK A +YKYDG+RAQIHK D + IFSR
Sbjct: 223 KTLKPEVGIPIRPMLAERLSNPEEILKKVGGSAL-VDYKYDGERAQIHK-KDDKIFIFSR 280
Query: 1008 NGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDS 1067
+ TS++PD++ I+++ + FI++ E+VA+D ++G ++ SFQEL R+R D
Sbjct: 281 RLENITSQYPDVVEYISKYTE--GKEFIIEGEIVAVDPESG-EMRSFQELMHRKRKS-DI 336
Query: 1068 VITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEG 1127
IK V+ VF+FD+M+ L RRK L+ + + Y + A + V
Sbjct: 337 YEAIKEYPVN--VFLFDLMYYEDVDYTTKPLEVRRKLLESIV--KPNDYVKIAHHIQVN- 391
Query: 1128 DDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
++ + +F A+ EG++VK++ DA Y R W
Sbjct: 392 ---------NVEDLKSFFYRAISEGGEGVMVKAIGKDAIYQAGARGWLW 431
>sp|Q979A1|DNLI_THEVO DNA ligase OS=Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 /
JCM 9571 / NBRC 15438 / GSS1) GN=lig PE=3 SV=1
Length = 588
Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 138/448 (30%), Positives = 217/448 (48%), Gaps = 56/448 (12%)
Query: 738 LCNMFRSLLALSPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEACGTNRSKIRD 797
L + LL + +D+ VYL K+A +++ IE + L+ A+ + +
Sbjct: 22 LTEILVELLKSADEDLQSLVYLIEGKLAPDYQGIETQMSDKLIIKALSIVSNIPEEAVSE 81
Query: 798 MYNRLGDLGDVAQECRQTQALLA-PPPPLLIKDVYSMLCKISVQTGSGSTARKKSLIVNL 856
Y++LGD+G VA+E + + + L +K V+ L +++ +GSGST + V+L
Sbjct: 82 TYSKLGDIGSVAREIAAKKNMRSLVNEDLTVKYVHDTLMRMAKTSGSGSTKARIDAYVDL 141
Query: 857 MCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQAVVMNSSLEFSHEGKMENLKEKLQS 916
S ++ ++ R + LRIG TIL A+ L FS E E ++
Sbjct: 142 ALSGTPADLMYITRIITGKLRIGVSDATILDAII--------LAFSDEKYSEEIE----- 188
Query: 917 LSAAAVEAYNILPSLDLLIPSLMNKGIGFSASTLSM--VPGVPIKPMLAKITNGVPQVLK 974
AYN P L + L +G S ++M P VP K MLA+ V ++++
Sbjct: 189 ------NAYNFHPDLGYIAVQLR---LGNLESVINMGPTPMVPFKVMLAERLRSVDEIVQ 239
Query: 975 LFQNK-AFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGT 1033
K AF EYKYDG R +IH +VD VR+FSR +ETT +FPD++ K A T
Sbjct: 240 KMNGKCAF--EYKYDGMRTEIH-IVDEKVRLFSRGNEETTGQFPDIV-------KSAKET 289
Query: 1034 F-----ILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFA 1088
F ILD E V + + G ++ FQ +S R RG K + + S ++ I VF+FDI++
Sbjct: 290 FHVSSVILDGEAVPYNPETG-ELYPFQVISQR-RGRKYDLDKV-SNEIPITVFLFDIVYI 346
Query: 1089 NGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEA 1148
NG+ L +RR+ L+ LF + F+ AK + ++SD I F +A
Sbjct: 347 NGKDLSKTPYAERRRILEGLFKENDN--FKLAKRI--------VSSDT--GTITKFFNQA 394
Query: 1149 LHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
+ CEG++ KS+ D+ Y R W
Sbjct: 395 IEDGCEGLVAKSMADDSYYKAGARGWLW 422
>sp|Q8TSR7|DNLI1_METAC DNA ligase 1 OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM
2834 / JCM 12185 / C2A) GN=lig1 PE=3 SV=1
Length = 580
Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 127/435 (29%), Positives = 208/435 (47%), Gaps = 48/435 (11%)
Query: 747 ALSPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLG 806
L D+V + YL I EN L I LVT AI A G + +++ Y R GDLG
Sbjct: 33 GLKGDEVKDSAYLFLGSIGPAFENTTLGIKDRLVTRAIAGAYGVSEEEVKKRYARAGDLG 92
Query: 807 DVAQECRQTQALLAPPPPLLIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMK 866
DVA E + + L I++V+ L +I +G GS +K L+ +++ +E K
Sbjct: 93 DVAFELSKKR-----EASLTIEEVFKRLRQIKEASGKGSQEKKTGLLSDILQKATPEEGK 147
Query: 867 FLVRTLVRNLRIGAMMRTILPALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYN 926
+++R ++ LR+G + +L A + A + H GK++ E+Y+
Sbjct: 148 YIIRIVLGRLRLGFGDQFLLEAFSIAFTGDK----KHAGKIK--------------ESYS 189
Query: 927 ILPSLDLLIPSLMNKGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYK 986
+ + L +L G G + S+ PG P+K MLA+ ++ + + K E K
Sbjct: 190 VCTDIGELAQTLAEHGAG-APGYFSIKPGRPVKSMLAQRVESFEELEERIKGKK-AAEEK 247
Query: 987 YDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILDAEVVA---I 1043
YDG+R QIHK D ++ FSR ++ T+++PD+I + E +A T +LD E+VA +
Sbjct: 248 YDGERVQIHKAGD-EIKAFSRRLEDITAQYPDIIEAVRESI--SADTIVLDGEIVAYAEL 304
Query: 1044 DRKNGC--KIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQR 1101
+++N + FQ L R R K V + K + VF FDI++ NGE LL T +R
Sbjct: 305 EKENTRIEEFYPFQNLMQRRR--KYEVEKYRE-KCPVAVFFFDILYLNGESLLKKTYPER 361
Query: 1102 RKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSL 1161
R L++ + G + E ++ ++ +F E + EGI+ KS+
Sbjct: 362 RALLEE--HVNGSGIVHLTRRTVTE----------NIEELEDFFNETVEKGLEGIVAKSM 409
Query: 1162 DVDAGYSPSKRSDSW 1176
++ Y KRS W
Sbjct: 410 SSNSVYEAGKRSWLW 424
>sp|Q9P9K9|DNLI_SULSH DNA ligase OS=Sulfolobus shibatae GN=lig PE=3 SV=1
Length = 601
Score = 167 bits (423), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 141/469 (30%), Positives = 225/469 (47%), Gaps = 53/469 (11%)
Query: 718 LARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVL-PAVYLCTNKIASNHENI-ELNI 775
+A FD +E KI + L + LL+ S ++ VY+ K+ + EL I
Sbjct: 6 IAEYFDKLE----KISSRLQLTALLADLLSKSDKAIIDKVVYIIQGKLWPDFLGYPELGI 61
Query: 776 GGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECR---QTQALL-----APPPPLLI 827
G + AI A T+ + + ++Y GDLG+VA+ + Q+ +L + L +
Sbjct: 62 GEKFLIKAISIATNTDENSVENLYKSTGDLGEVARRLKSKQQSTGILGFLGTSSKESLTV 121
Query: 828 KDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILP 887
+VYS L K+++ TG GS K L+ L+ E KFLVR + LR+G T+L
Sbjct: 122 DEVYSTLSKVALTTGEGSRDLKIRLLAGLLKKADPLEAKFLVRFVEGRLRVGIGDATVLD 181
Query: 888 ALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMNKGIGFSA 947
A+A A QS S AYN+ L + ++ KGI +
Sbjct: 182 AMAIAFGGG------------------QSASEIVERAYNLRADLGNIAKIIVEKGIE-AL 222
Query: 948 STLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSR 1007
TL G+PI+PMLA+ + ++LK A +YKYDG+RAQIHK D + IFSR
Sbjct: 223 KTLKPEVGIPIRPMLAERLSNPEEILKKVGGSAL-VDYKYDGERAQIHKKSD-KIFIFSR 280
Query: 1008 NGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDS 1067
+ TS++PD++ I+++ + FI++ E+VA+D ++G ++ +FQEL R+R D
Sbjct: 281 RLENITSQYPDVVEYISKYVE--GKEFIIEGEIVAVDPESG-EMRAFQELMHRKRKS-DI 336
Query: 1068 VITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEG 1127
IK V+ VF+FD+M+ L RRK L+ + + Y + A + V
Sbjct: 337 YEAIKEYPVN--VFLFDLMYYEDVDYTTKPLEVRRKLLESIV--KPNDYVKIAHHIQVN- 391
Query: 1128 DDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
++ + +F A+ EG++VK++ DA Y R W
Sbjct: 392 ---------NVEDLKSFFYRAISEGGEGVMVKAIGKDAIYQAGARGWLW 431
>sp|C0QSL7|DNLI_PERMH Probable DNA ligase OS=Persephonella marina (strain DSM 14350 /
EX-H1) GN=lig PE=3 SV=1
Length = 582
Score = 167 bits (422), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 136/471 (28%), Positives = 214/471 (45%), Gaps = 62/471 (13%)
Query: 715 YIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENIELN 774
Y LA+ + ++E +IK L ++F+ P+ + VYL +IA + ++ N
Sbjct: 3 YTKLAQLYQILEETTSRIKMTQALVDLFKET---PPELIDKVVYLSIGRIAPEYTGLDYN 59
Query: 775 IGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQALLAPPPPLLIKDVYSML 834
A+ + I+ + GDLGD ++ + + + P L +++VY L
Sbjct: 60 FSEKSAIKALSTVLNISEHDIQHQVLQTGDLGDAGKKLYEEKGV-KPEGILTVEEVYRTL 118
Query: 835 CKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQAVV 894
+I+ TG GST +K L L+ E+K+L+RT+ LR+G TI+ AL+ A
Sbjct: 119 REIAQTTGYGSTKKKLQLFTELLKKASPLEVKYLLRTITERLRLGIGDNTIMDALSIAFT 178
Query: 895 MNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMNKGIGFSASTLSMVP 954
GK EN +E ++ AYNI L + L KG+ + + +
Sbjct: 179 ----------GKKEN-REIIE-------RAYNISSDLGYVARILAEKGLD-AVKNIKIEI 219
Query: 955 GVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTS 1014
G PI+PMLA+ +LK KA EYKYDG+R Q+H+ D T +FSR + T
Sbjct: 220 GRPIRPMLAERMAIPSYILKKLGGKA-GAEYKYDGERIQVHRKGD-TFYLFSRRLENITD 277
Query: 1015 RFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSV 1074
+FPDLI + E I++ E V ID +G I FQ+L +R V +
Sbjct: 278 QFPDLIEFLKESIPEEC---IIELEAVVIDPSSGA-IRPFQDLMNRR---VKYVTRFHIM 330
Query: 1075 KVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTS 1134
I F+FDIM+ NGE L +RRK L+ ++ +T
Sbjct: 331 MYPIAGFIFDIMYLNGEDLTLKPYPERRKILE---------------------ENIKITE 369
Query: 1135 DVSLSK---------INNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
++LS+ + +F +A+ CEG++ KSL D+ Y KR W
Sbjct: 370 RINLSERKIVDNVEDLESFFHQAIEDGCEGLVCKSLQKDSIYQAGKRGFLW 420
>sp|Q980T8|DNLI_SULSO DNA ligase OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 /
JCM 11322 / P2) GN=lig PE=1 SV=1
Length = 601
Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 140/469 (29%), Positives = 223/469 (47%), Gaps = 53/469 (11%)
Query: 718 LARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVL-PAVYLCTNKIASNHENI-ELNI 775
+A FD +E KI + L + LL+ S ++ VY+ K+ + EL I
Sbjct: 6 IAEYFDKLE----KISSRLQLTALLADLLSKSDKTIIDKVVYIIQGKLWPDFLGYPELGI 61
Query: 776 GGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECR---QTQALLA-----PPPPLLI 827
G + AI A T+ + + ++Y +GDLG+VA+ + Q+ +L L +
Sbjct: 62 GEKFLIKAISIATNTDENSVENLYKTIGDLGEVARRLKSKQQSTGILGFLGTTSKESLTV 121
Query: 828 KDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILP 887
+VYS L K+++ TG GS K L+ L+ E KFLVR + LR+G T+L
Sbjct: 122 DEVYSTLSKVALTTGEGSRDLKIRLLAGLLKKADPLEAKFLVRFVEGRLRVGIGDATVLD 181
Query: 888 ALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMNKGIGFSA 947
A+A A QS S AYN+ L + ++ KGI +
Sbjct: 182 AMAIAFGGG------------------QSASEIIERAYNLRADLGNIAKIIVEKGIE-AL 222
Query: 948 STLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSR 1007
TL G+PI+PMLA+ + ++LK A +YKYDG+RAQIHK D + IFSR
Sbjct: 223 KTLKPQVGIPIRPMLAERLSNPEEILKKMGGNAI-VDYKYDGERAQIHKKED-KIFIFSR 280
Query: 1008 NGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDS 1067
+ TS++PD++ ++++ + FI++ E+VAID ++G ++ FQEL R+R D
Sbjct: 281 RLENITSQYPDVVDYVSKYIE--GKEFIIEGEIVAIDPESG-EMRPFQELMHRKRKS-DI 336
Query: 1068 VITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEG 1127
IK V+ VF+FD+M+ L RRK L+ + + Y + A +
Sbjct: 337 YEAIKEYPVN--VFLFDLMYYEDVDYTTKPLEARRKLLESIV--KPNDYVKIAHHIQAN- 391
Query: 1128 DDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
++ + +F A+ EG++VK++ DA Y R W
Sbjct: 392 ---------NVEDLKSFFYRAISEGGEGVMVKAIGKDAIYQAGARGWLW 431
>sp|A1RTK4|DNLI_PYRIL DNA ligase OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189)
GN=lig PE=3 SV=1
Length = 584
Score = 165 bits (417), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 127/449 (28%), Positives = 217/449 (48%), Gaps = 54/449 (12%)
Query: 718 LARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENIELNIGG 777
L +T VE+ + + +L ++F+ P+++ +Y + E +EL +
Sbjct: 6 LVKTLAAVESTTQRTTMVKLLTSLFKKA---RPEEIDKIIYFVLGDLRPPWEGVELGVAE 62
Query: 778 SLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQ---ALLA--PPPPLLIKDVYS 832
L A+ +A G + S++ +Y + GD+G+ A++ T LLA PL + +VY
Sbjct: 63 KLCLRAVSKATGVSISELEALYKKTGDVGEAARKALSTAKRPGLLAFGQQKPLEVSEVYD 122
Query: 833 MLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQA 892
L K++ +G G+ K SL+ +L +E K++ R +V LR+G T++ AL+ A
Sbjct: 123 TLLKVAQASGEGAQDMKISLLASLFAKASPEEAKYIARFVVGKLRLGVADMTLIEALSDA 182
Query: 893 VVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMNKGIGFSASTLSM 952
++ KE L+ AY+I P L L + G + +
Sbjct: 183 FGVD--------------KEALE-------RAYHIYPDLGKLARHVAE---GRPLEEIKI 218
Query: 953 VPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDET 1012
PGVP+ PMLA+ + ++L A CEYKYDG+RAQIH L +G V+IFSR ++
Sbjct: 219 TPGVPVLPMLAQRLSSSSEILAKLGGSAI-CEYKYDGERAQIH-LKEGVVKIFSRRLEDI 276
Query: 1013 TSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIK 1072
T +PD++ + E +A IL+ E+VAID G ++ FQEL R+R + + +
Sbjct: 277 THAYPDVVKAVREAV--SAREAILEGEIVAIDPDTG-DMLPFQELMHRKRKHE---VAVA 330
Query: 1073 SVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYD-EKMGYFQYAKEMTVEGDDNC 1131
+ + +FD+++ +GE L L RR L ++ + EK+ ++ DD
Sbjct: 331 VEMYPVVLNLFDLLYIDGEDLTNEPLIYRRVRLSEVVQETEKVSIAKWRV-----FDDA- 384
Query: 1132 LTSDVSLSKINNFLEEALHSSCEGIIVKS 1160
+I+ F EA+ EG++ KS
Sbjct: 385 -------EEIDVFFHEAVSLGMEGLVCKS 406
>sp|A1RY72|DNLI2_THEPD DNA ligase 2 OS=Thermofilum pendens (strain Hrk 5) GN=lig2 PE=3 SV=1
Length = 601
Score = 164 bits (416), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 134/480 (27%), Positives = 226/480 (47%), Gaps = 68/480 (14%)
Query: 714 PYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENIEL 773
PY LA ++ +E+ ++ L +F+ P+ + VYL ++ ++E +EL
Sbjct: 8 PYSVLADFYERIESTSSRLAMTDYLVALFKKT---PPEVIDKVVYLTQGQLRPDYEGVEL 64
Query: 774 NIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQALLAPPPPLL------- 826
+ L A+ +A G + + D+Y + GD+G VA++ L AP LL
Sbjct: 65 GVAEKLALRALAKASGRHLKDVEDLYKKTGDIGAVAEKL-----LTAPGGGLLEFFGTPV 119
Query: 827 ------IKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGA 880
+ VYS L KI+ +G G+ K + +V L+ + KE ++++RT++ LR+G
Sbjct: 120 QKKELTVSQVYSALMKIAQASGEGAQETKVNTLVALLQDAKPKEARYILRTVLGRLRLGI 179
Query: 881 MMRTILPALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMN 940
TIL ALA A + + ++ E+ AY P L + L
Sbjct: 180 ADMTILDALAAAFAGSKA--------ARDVIER----------AYTKHPDLGYIAKLLAT 221
Query: 941 KGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDG 1000
KG+ AS L + G+P+ PMLA+ + ++L+ K EYKYDG+R Q HK D
Sbjct: 222 KGLDAVAS-LKIEVGIPVLPMLAERLSDPAEILEKLGGKCL-AEYKYDGERVQAHKSGD- 278
Query: 1001 TVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSR 1060
V +FSR + T +PD++ + A I++ E+VA + G +++ FQEL R
Sbjct: 279 KVLLFSRRLENITHHYPDVVEYVKRLKVREA---IVEGEIVAYNPDTG-EMLPFQELMHR 334
Query: 1061 ERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYA 1120
R D +K V V++FD+++ +GE+L+ L QRR L
Sbjct: 335 RR-KYDVEKAMKEYPVR--VYLFDVIYMDGEELIEKPLDQRRLIL--------------- 376
Query: 1121 KEMTVEGDDNCLTSDVSL----SKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
+++ EGD++ L S + + +F E+A+ CEG++ KS+ + Y R W
Sbjct: 377 EKIVPEGDEDILLSTAKVVGDAKDLLHFFEQAISEGCEGVMCKSIGPGSIYQMGARGWLW 436
>sp|B0V2S2|DCR1B_DANRE 5' exonuclease Apollo OS=Danio rerio GN=dclre1b PE=2 SV=1
Length = 571
Score = 164 bits (414), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 102/323 (31%), Positives = 159/323 (49%), Gaps = 39/323 (12%)
Query: 42 KHVPNTRFLIDAFRYAADFSVS-YFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLLSQIL 100
K +P+T +D ++ V +FLSH HSDH GLS +WS I+CS +T++LL L
Sbjct: 4 KVLPDTPIAVDCWQLRKCLHVRLFFLSHMHSDHTCGLSSTWSHRPIYCSPLTAKLLRLKL 63
Query: 101 NINPKFIYPLPIKIPVLI-------DGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVH 153
I K+I PL I ++ + V L+ ANHCPGAV FLF+ G F ++
Sbjct: 64 QIKQKWIRPLEIGQDHMLMLDDLGKERLTVNLIDANHCPGAVMFLFQ-----GYFGTRLY 118
Query: 154 TGDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRVGGELN 213
TGDFR+ +ML P + D ++LD T C+P P ++++ + + ++ G
Sbjct: 119 TGDFRYTPSMLRVPCLQNHINIDVLYLDNTNCDPTRALPSRQQATQQIKQIIRDHPG--- 175
Query: 214 EGLQKRVLFLVATYVIGKEKILIEIFKKCGRKVCVDSRKMEVLRVLGYGDSGVFTEDESE 273
++ Y +GKE +L+++ + V VD ++E LRVL D VFT D
Sbjct: 176 ------YAVVIGLYSLGKESLLVDLAMEFKTWVEVDRERLETLRVLQLPD--VFTTDSGA 227
Query: 274 TDVHVVGWNEI-----MVERGYDKVVGFVPTGWTYEVKRNKFAVRSKDAFEIHLVPYSEH 328
+ VV + I M + +PT R + +++VPYS+H
Sbjct: 228 GRIRVVNQSMISASNLMAWNKLQSTIAILPTS------RPMVSCHPN----VYVVPYSDH 277
Query: 329 SNYDELREYVKFLKPKRVIPTVG 351
S+Y EL ++V L P ++P VG
Sbjct: 278 SSYQELEDFVSALSPISLVPIVG 300
>sp|Q8PVR7|DNLI1_METMA DNA ligase 1 OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647
/ Goe1 / Go1 / JCM 11833 / OCM 88) GN=lig1 PE=3 SV=1
Length = 579
Score = 160 bits (406), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 128/434 (29%), Positives = 201/434 (46%), Gaps = 48/434 (11%)
Query: 748 LSPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGD 807
L D+V + YL EN L I L AI A G R +R Y R GDLGD
Sbjct: 33 LRGDEVKDSAYLFLGSTGPAFENTTLGIKDMLAIRAIAGAYGVTREDVRKRYARTGDLGD 92
Query: 808 VAQECRQTQALLAPPPPLLIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKF 867
VA E + + L I+DV+ L +I +G GS K +L +++ +E K+
Sbjct: 93 VAFELSKKR-----ESSLTIEDVFQRLLQIRETSGKGSQEEKTALFSDILQKATPEEGKY 147
Query: 868 LVRTLVRNLRIGAMMRTILPALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNI 927
+VR ++ LR+G + +L A A A + H K++ E+Y++
Sbjct: 148 IVRLVLGRLRLGFGDQFLLEAFAIAFTGDK----KHAAKIK--------------ESYSV 189
Query: 928 LPSLDLLIPSLMNKGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKY 987
+ L L G + +S+ PG P+K ML++ ++ K + K E KY
Sbjct: 190 CTDIGELAKILAENG-ARATGFISIKPGRPVKSMLSQRVESFEELEKRVKGKK-AAEEKY 247
Query: 988 DGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAID--R 1045
DG+R Q+HK +G ++ FSR ++ TS++P++I + + A +LD E+VA
Sbjct: 248 DGERVQVHKTGEG-IKAFSRRLEDITSQYPEIIEDVRKTV--PANEIVLDGEIVAYAELE 304
Query: 1046 KNGCKI---MSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRR 1102
+NG +I FQ L R R K + + K + VF FDI++ NGE LL +RR
Sbjct: 305 RNGNRIEEFYPFQNLMQRRR--KYEIENYRK-KCPVAVFFFDILYLNGEPLLKRPYPERR 361
Query: 1103 KYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLD 1162
L+ + G + +K + E S+ +I +F E + EGI+VKS+
Sbjct: 362 ALLEMNVVES--GIIRLSKRIVTE----------SVEEIEDFFNETIEKGLEGIVVKSMS 409
Query: 1163 VDAGYSPSKRSDSW 1176
++ Y KRS W
Sbjct: 410 SNSYYEAGKRSWFW 423
>sp|Q5QJC3|DCR1B_CHICK 5' exonuclease Apollo OS=Gallus gallus GN=DCLRE1B PE=2 SV=1
Length = 457
Score = 160 bits (405), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 103/319 (32%), Positives = 166/319 (52%), Gaps = 37/319 (11%)
Query: 44 VPNTRFLIDAF--RYAADFSVSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLLSQILN 101
+P T +D + R A + +FLSH HSDH GLS +WS+ + +CS +T+RLL L
Sbjct: 6 IPGTPIAVDFWSVRRAGGARL-FFLSHMHSDHTVGLSSTWSRPL-YCSPLTARLLHHRLK 63
Query: 102 INPKFIYPLPI-KIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFC 160
+ ++I PL + + + + V L+ ANHCPG+V FLF+ G F ++TGDFR+
Sbjct: 64 VPTRWIRPLEVGQSHAVGEEVTVTLLDANHCPGSVMFLFE-----GAFGTILYTGDFRYS 118
Query: 161 KTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRVGGELNEGLQKRV 220
M +P ++ D ++LD T C P P + + ++ R Q RV
Sbjct: 119 PAMQREPALSG-RRIDRLYLDNTNCRPHGALPSRSRAALQAAQLIRR-------HPQHRV 170
Query: 221 LFLVATYVIGKEKILIEIFKKCGRKVCVDSRKMEVLRVLGYGDSGVFTEDESETDVHVVG 280
+ + Y +GKE++L+++ + G V V ++E +R+L + VFT +E +H V
Sbjct: 171 V--IGVYSLGKEELLVDLALEFGTWVVVSPSRLEQMRLLELPE--VFTTEEGAGRIHAVD 226
Query: 281 -----WNEIMVERGYDKVVGFVPTGWTYEVKRNKFAVRSKDAFEIHLVPYSEHSNYDELR 335
W+ ++ + +PTG +V +IHL+PYS+HS++ EL
Sbjct: 227 VAEIRWDTLVSWNVLHPTIAILPTGRPVKVTHP----------QIHLIPYSDHSSFSELC 276
Query: 336 EYVKFLKPKRVIPTVGMDI 354
E+VK+LKP VIP V D+
Sbjct: 277 EFVKWLKPCSVIPIVKGDM 295
>sp|Q9YD18|DNLI_AERPE DNA ligase OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM
9820 / NBRC 100138 / K1) GN=lig PE=3 SV=2
Length = 602
Score = 160 bits (405), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 129/440 (29%), Positives = 206/440 (46%), Gaps = 52/440 (11%)
Query: 750 PDDVLPAVYLCTNKIASNHENI-ELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDV 808
P + VYL K+ + + + EL +G L+ AI A ++ +Y +GDLG V
Sbjct: 35 PGAIGIVVYLIQGKLGPDWKGLPELGVGEKLLVKAIALAYKATEERVERLYKSVGDLGSV 94
Query: 809 AQ----ECRQTQA--------LLAPPPPLLIKDVYSMLCKISVQTGSGSTARKKSLIVNL 856
A+ E R A + L ++ VY+ L +I++ G GS K L+ L
Sbjct: 95 AERLSREYRSRAARAVTLEAFMAGGGEALTVRRVYNTLYRIAMAQGEGSRDIKLRLLAGL 154
Query: 857 MCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQAVVMNSSLEFSHEGKMENLKEKLQS 916
+ E K++VR + LR+G T+L ALA A F + E+
Sbjct: 155 LADAEPVEAKYIVRFVEGRLRVGVGDATVLDALAMA--------FGGGAHARPVIER--- 203
Query: 917 LSAAAVEAYNILPSLDLLIPSLMNKGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLF 976
AYN+ L + + +G+ V GVPI+PMLA+ ++L+
Sbjct: 204 -------AYNLRADLGYIAEVVAREGVDALRGVKPQV-GVPIRPMLAERGRDPAEILRKV 255
Query: 977 QNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFIL 1036
+A EYKYDG+RAQIHK DG V I+SR + T FPD++ + + K AG I+
Sbjct: 256 GGRA-VVEYKYDGERAQIHKK-DGEVYIYSRRLENITRMFPDVVEMARKGLK--AGEAIV 311
Query: 1037 DAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGY 1096
+ E+VA+D N +I FQ L R+R K + + +V + VF+FD ++ +GE L
Sbjct: 312 EGEIVAVDPDN-YEIQPFQVLMQRKR--KHDIHRVMR-EVPVAVFLFDALYVDGEDLTSK 367
Query: 1097 TLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGI 1156
L +RR+ LK++ + + + E TSD ++ F +A+ EG+
Sbjct: 368 PLPERRRRLKEIVVETPLWRLAESIE----------TSDP--EELWTFFLKAIEEGAEGV 415
Query: 1157 IVKSLDVDAGYSPSKRSDSW 1176
+VK++ D+ Y+ R W
Sbjct: 416 MVKAVHRDSVYTAGVRGWLW 435
>sp|Q9H816|DCR1B_HUMAN 5' exonuclease Apollo OS=Homo sapiens GN=DCLRE1B PE=1 SV=1
Length = 532
Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 100/316 (31%), Positives = 169/316 (53%), Gaps = 32/316 (10%)
Query: 44 VPNTRFLID--AFRYAADFSVSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLLSQILN 101
+P+T +D + R A + +FLSH HSDH GLS +W++ + +CS IT+ LL + L
Sbjct: 6 IPHTPIAVDFWSLRRAGTARL-FFLSHMHSDHTVGLSSTWARPL-YCSPITAHLLHRHLQ 63
Query: 102 INPKFIYPLPIK----IPVLIDGCE---VVLVGANHCPGAVQFLFKVPGRNGGFERYVHT 154
++ ++I L + +P+ G E V L+ ANHCPG+V FLF+ G F ++T
Sbjct: 64 VSKQWIQALEVGESHVLPLDEIGQETMTVTLLDANHCPGSVMFLFE-----GYFGTILYT 118
Query: 155 GDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRVGGELNE 214
GDFR+ +ML +P + ++LD T CNP + P ++E+ +V ++ +
Sbjct: 119 GDFRYTPSMLKEPALTLGKQIHTLYLDNTNCNPALVLPSRQEAAHQIVQLIRK------- 171
Query: 215 GLQKRVLFLVATYVIGKEKILIEIFKKCGRKVCVDSRKMEVLRVLGYGDSGVFTEDESET 274
+ + Y +GKE +L ++ + V + R++E++++LG D VFT +E
Sbjct: 172 --HPQHNIKIGLYSLGKESLLEQLALEFQTWVVLSPRRLELVQLLGLAD--VFTVEEKAG 227
Query: 275 DVHVVGWNEIMVERGYDKVVGFVPTGWTYEVKRNKFAVRSKDAFEIHLVPYSEHSNYDEL 334
+H V EI + ++ + T T + + S +IH++PYS+HS+Y EL
Sbjct: 228 RIHAVDHMEIC----HSNMLRWNQTHPTIAILPTSRKIHSSHP-DIHVIPYSDHSSYSEL 282
Query: 335 REYVKFLKPKRVIPTV 350
R +V LKP +V+P V
Sbjct: 283 RAFVAALKPCQVVPIV 298
>sp|A4YD25|DNLI_METS5 DNA ligase OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348)
GN=lig PE=3 SV=1
Length = 598
Score = 157 bits (396), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 133/473 (28%), Positives = 221/473 (46%), Gaps = 60/473 (12%)
Query: 718 LARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENI-ELNIG 776
+A FD +E +I+ S+L ++F++ D V VYL ++ + + E+ +G
Sbjct: 6 IAEYFDRLEKISSRIQLTSLLSDLFKNTEREVIDKV---VYLIQGRLWPDFTGMPEIGMG 62
Query: 777 GSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECR---QTQALLA------PPPPLLI 827
+ AI A G ++ +Y +GDLG+VA R + ++L+ L +
Sbjct: 63 EKFLIKAIAMAYGNKEEEVEKLYKNIGDLGEVAYSLRSKVKGVSILSFVGGNQEAGELDV 122
Query: 828 KDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILP 887
+VY+ L KI+ TG GS K + L+ E K+LVR + LR+G T+L
Sbjct: 123 MEVYNELVKIATSTGEGSRDIKIRIFAGLIKKATPIEAKYLVRFVEGRLRLGIGDATVLD 182
Query: 888 ALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMNKGIGFSA 947
ALA + F + E+ AYN+ L + + +GI
Sbjct: 183 ALA--------ITFGGSADYRPIVER----------AYNLRADLGDIARVIATEGIE-KL 223
Query: 948 STLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSR 1007
+S PG+PI+PMLA+ ++++ KA +YKYDG+RAQIH+ D V IFSR
Sbjct: 224 KNISPTPGIPIRPMLAERLPDPEEIMEKMNGKAL-VDYKYDGERAQIHRKGD-KVTIFSR 281
Query: 1008 NGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDS 1067
+ T ++ D+ + +F K FI++ E+V +D ++G ++ FQEL R R K++
Sbjct: 282 RMENITDQYIDVTEYVKQFVK--GDNFIVEGEIVPVDPESG-EMRPFQELMHRRR--KNN 336
Query: 1068 VI-TIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVE 1126
+ IK V++ F+FD+MF GE L +RR L +E+
Sbjct: 337 IAEAIKEYPVNL--FLFDLMFFEGEDYTTKPLPERRAKL---------------EEILAS 379
Query: 1127 GDDNCLTSDV---SLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
D + S + + K+ + +A+ EG++VKS+ D+ Y R W
Sbjct: 380 NDKVHIASHIIADRVDKLREYFYQAISEGAEGVMVKSIGPDSIYQAGSRGWLW 432
>sp|D2H8V8|DCR1B_AILME 5' exonuclease Apollo OS=Ailuropoda melanoleuca GN=DCLRE1B PE=3
SV=1
Length = 529
Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 99/321 (30%), Positives = 170/321 (52%), Gaps = 42/321 (13%)
Query: 44 VPNTRFLID--AFRYAADFSVSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLLSQILN 101
+P+T +D + R A + +FLSH HSDH GLS +W++ + +CS IT+ L+ + L
Sbjct: 6 IPHTPIAVDFWSLRRAGSARL-FFLSHMHSDHTVGLSSTWARPL-YCSPITAYLVHRHLQ 63
Query: 102 INPKFIYPLPIK----IPVLIDGCE---VVLVGANHCPGAVQFLFKVPGRNGGFERYVHT 154
+ ++I L + +P+ G E V L+ ANHCPG+V FLF+ G F ++T
Sbjct: 64 VPKEWIRALEVGESHVLPLDEIGRETMTVTLMDANHCPGSVMFLFE-----GYFGTILYT 118
Query: 155 GDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRVGGELNE 214
GDFR+ +ML +P + ++LD T CNP ++ P ++E+ +V ++ +
Sbjct: 119 GDFRYTPSMLKEPALKLGKQIHTLYLDNTNCNPAWVLPSRQEAARQIVELIRK------- 171
Query: 215 GLQKRVLFLVATYVIGKEKILIEIFKKCGRKVCVDSRKMEVLRVLGYGDSGVFTEDESET 274
+ + Y +GKE +L ++ + V + R++E++++LG D VFT +E
Sbjct: 172 --HPQHNIKIGLYSLGKESLLEQLALEFQTWVVLSPRRLELVQLLGLAD--VFTLEEKAG 227
Query: 275 DVHVVGWNEI-----MVERGYDKVVGFVPTGWTYEVKRNKFAVRSKDAFEIHLVPYSEHS 329
+H V EI + + +PT + ++ R+ +IH++PYS+HS
Sbjct: 228 RIHAVDHMEICHSAMLHWNQTHPTIAILPT--SRKIHRSH--------PDIHIIPYSDHS 277
Query: 330 NYDELREYVKFLKPKRVIPTV 350
+Y ELR +V LKP +V+P V
Sbjct: 278 SYSELRTFVAALKPCQVVPIV 298
>sp|Q4KLY6|DCR1B_RAT 5' exonuclease Apollo OS=Rattus norvegicus GN=Dclre1b PE=2 SV=2
Length = 541
Score = 150 bits (380), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 99/316 (31%), Positives = 169/316 (53%), Gaps = 32/316 (10%)
Query: 44 VPNTRFLID--AFRYAADFSVSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLLSQILN 101
+P T +D + R A + +FLSH H DH GLS +W++ + +CS IT+ LL + L
Sbjct: 6 IPQTPIAVDFWSLRRAGTARL-FFLSHMHCDHTVGLSSTWARPL-YCSPITAHLLHRRLQ 63
Query: 102 INPKFIYPLPI--KIPVLID--GCE---VVLVGANHCPGAVQFLFKVPGRNGGFERYVHT 154
++ ++I L I +L+D G E V L+ ANHCPG+V FLF+ G F ++T
Sbjct: 64 VSKQWIRALEIGESHVLLLDEIGQETMTVTLIDANHCPGSVMFLFE-----GYFGTILYT 118
Query: 155 GDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRVGGELNE 214
GDFR+ +ML +P + ++LD T CNP + P ++E+ + ++ ++ +
Sbjct: 119 GDFRYTPSMLKEPALTLGKQIHTLYLDNTNCNPALVLPSRQEATQQIIQLIRQFP----- 173
Query: 215 GLQKRVLFLVATYVIGKEKILIEIFKKCGRKVCVDSRKMEVLRVLGYGDSGVFTEDESET 274
Q + + Y +GKE +L ++ + V + +++E++++LG D VFT +E
Sbjct: 174 --QHNI--KIGLYSLGKESLLEQLALEFQTWVVLSPQRLELVQLLGLAD--VFTVEEEAG 227
Query: 275 DVHVVGWNEIMVERGYDKVVGFVPTGWTYEVKRNKFAVRSKDAFEIHLVPYSEHSNYDEL 334
+H V EI + ++ + T T + +RS I+ +PYS+HS+Y EL
Sbjct: 228 RIHAVDHMEIC----HSAMLQWNQTHPTIAIFPTSRKIRSPHP-SIYSIPYSDHSSYSEL 282
Query: 335 REYVKFLKPKRVIPTV 350
R +V L+P +V+P V
Sbjct: 283 RAFVAALRPCQVVPIV 298
>sp|O67398|DNLI_AQUAE Probable DNA ligase OS=Aquifex aeolicus (strain VF5) GN=lig PE=3 SV=2
Length = 584
Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 132/466 (28%), Positives = 211/466 (45%), Gaps = 52/466 (11%)
Query: 715 YIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVL-PAVYLCTNKIASNHENIEL 773
Y LA ++ +E +I+ +S L +F+ +P +++ VYL KIA + ++
Sbjct: 3 YRILAEFYERIEKTTSRIEMVSSLVELFKQ----TPKELIDKVVYLSIGKIAPEYTGLDY 58
Query: 774 NIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQALLAPPPPLLIKDVYSM 833
N G L A+ +I + GDLG+ ++ + P L +++VY+
Sbjct: 59 NFGEKLAIRALSRVLKIPALEIEKRVRQEGDLGEAGRKLYEELGF-KPEGTLTVEEVYNG 117
Query: 834 LCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQAV 893
L I+ G GS RK S+ +L+ E K+L+RT+ LR+G TIL AL+ A
Sbjct: 118 LLNIAKAVGIGSQERKISIFASLLKKATPLEAKYLLRTITERLRLGIGDNTILEALSIAF 177
Query: 894 VMNSSLEFSHEGKMENLKEKLQSLSAAAVE-AYNILPSLDLLIPSLMNKGIGFSASTLSM 952
+ S++ VE AYN+ L + L KG+ + +
Sbjct: 178 TGS-------------------SVNREVVERAYNLTSDLGYVAKILAEKGLE-GVKQVKI 217
Query: 953 VPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDET 1012
G P++PMLA+ + +L+ K EYKYDG+R Q H+ D +FSR +
Sbjct: 218 QVGRPVRPMLAERMSSPILILRKLGGKC-GAEYKYDGERIQAHRKGD-EFYLFSRRLENI 275
Query: 1013 TSRFPDLISIINEFCKPA-AGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITI 1071
T ++PDLI EF K A FI++ E V ID +G +I FQEL R+ V
Sbjct: 276 THQYPDLI----EFLKEAIPHDFIVELEAVVIDPASG-EIRPFQELMHRK---VKYVTKY 327
Query: 1072 KSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLF-YDEKMGYFQYAKEMTVEGDDN 1130
K + F+FDI++ +GE L +RR+ L+ + +++G VE
Sbjct: 328 HITKYPVAGFLFDIIYLDGEDLTLKPYPERREILEKVVKRTDRIGLVPRKIVDNVE---- 383
Query: 1131 CLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176
+ NF +A+ CEG++ KSL ++ Y KR W
Sbjct: 384 ---------DLENFFYQAIEEGCEGLVCKSLAPNSIYQAGKRGFLW 420
>sp|Q8C7W7|DCR1B_MOUSE 5' exonuclease Apollo OS=Mus musculus GN=Dclre1b PE=1 SV=2
Length = 541
Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 98/316 (31%), Positives = 167/316 (52%), Gaps = 32/316 (10%)
Query: 44 VPNTRFLID--AFRYAADFSVSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLLSQILN 101
+P T +D + R A + +FL+H H DH GLS +W++ + +CS IT+ LL + L
Sbjct: 6 IPQTPIAVDFWSLRRAGSARL-FFLTHMHCDHTVGLSSTWARPL-YCSPITACLLHRRLQ 63
Query: 102 INPKFIYPLPIK----IPVLIDGCE---VVLVGANHCPGAVQFLFKVPGRNGGFERYVHT 154
++ +I L + +P+ G E V L+ ANHCPG+V FLF+ G F ++T
Sbjct: 64 VSKHWIRALEVGESHVLPLDEIGQETMTVTLIDANHCPGSVMFLFE-----GYFGTILYT 118
Query: 155 GDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRVGGELNE 214
GDFR+ +ML +P + ++LD T CNP + P ++E+ + +V ++ +
Sbjct: 119 GDFRYTPSMLKEPALILGKQIHTLYLDNTNCNPALVLPSRQEATQQIVQLIRQFP----- 173
Query: 215 GLQKRVLFLVATYVIGKEKILIEIFKKCGRKVCVDSRKMEVLRVLGYGDSGVFTEDESET 274
Q + + Y +GKE +L ++ + V + +++E++++LG D VFT +E
Sbjct: 174 --QHNI--KIGLYSLGKESLLEQLALEFRTWVVLSPQRLELVQLLGLAD--VFTVEEEAG 227
Query: 275 DVHVVGWNEIMVERGYDKVVGFVPTGWTYEVKRNKFAVRSKDAFEIHLVPYSEHSNYDEL 334
+H V EI + ++ + + T + VRS I+ VPYS+HS+Y EL
Sbjct: 228 RIHAVDHTEIC----HSAMLQWNQSHPTIAIFPTSRKVRSPHP-SIYTVPYSDHSSYSEL 282
Query: 335 REYVKFLKPKRVIPTV 350
R +V L+P +V+P V
Sbjct: 283 RAFVAALRPCQVVPIV 298
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 431,804,171
Number of Sequences: 539616
Number of extensions: 18874660
Number of successful extensions: 56004
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 133
Number of HSP's that attempted gapping in prelim test: 55099
Number of HSP's gapped (non-prelim): 442
length of query: 1176
length of database: 191,569,459
effective HSP length: 129
effective length of query: 1047
effective length of database: 121,958,995
effective search space: 127691067765
effective search space used: 127691067765
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)