Query 001045
Match_columns 1176
No_of_seqs 562 out of 4207
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 08:09:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001045.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001045hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x9n_A DNA ligase I; 5'-adenyl 100.0 6E-83 2.1E-87 789.1 44.0 469 692-1176 35-511 (688)
2 2hiv_A Thermostable DNA ligase 100.0 7.1E-77 2.4E-81 730.0 45.6 430 705-1176 13-451 (621)
3 3gde_A DNA ligase; DNA-binding 100.0 4.2E-76 1.4E-80 713.7 40.8 415 710-1176 1-418 (558)
4 2cfm_A Thermostable DNA ligase 100.0 5.6E-75 1.9E-79 707.0 41.9 416 713-1176 1-418 (561)
5 3l2p_A DNA ligase 3; DNA ligas 100.0 1.7E-69 5.9E-74 657.7 33.2 401 711-1176 5-419 (579)
6 4b87_A DNA cross-LINK repair 1 100.0 1.2E-46 4.1E-51 436.9 35.4 337 24-376 14-365 (367)
7 3zdk_A 5' exonuclease apollo; 100.0 1.1E-42 3.9E-47 398.9 25.9 315 40-393 3-334 (336)
8 1vs0_A Putative DNA ligase-lik 100.0 1.4E-35 4.7E-40 336.8 13.7 182 952-1176 3-184 (310)
9 4htp_A DNA ligase 4; helical d 100.0 8.1E-35 2.8E-39 318.0 15.9 200 711-940 12-230 (240)
10 1a0i_A DNA ligase; DNA replica 100.0 1.1E-34 3.8E-39 334.8 14.0 202 949-1176 2-235 (348)
11 3zq4_A Ribonuclease J 1, RNAse 100.0 1.8E-32 6.1E-37 334.2 27.3 315 36-375 20-405 (555)
12 3af5_A Putative uncharacterize 100.0 1.3E-31 4.4E-36 332.9 34.6 315 37-373 201-631 (651)
13 3iek_A Ribonuclease TTHA0252; 100.0 5.2E-32 1.8E-36 321.3 29.4 297 38-351 14-401 (431)
14 2i7t_A Cleavage and polyadenyl 100.0 5.9E-32 2E-36 323.4 29.5 311 22-351 14-419 (459)
15 2ycb_A Beta-CAsp RNAse, cleava 100.0 4.1E-31 1.4E-35 327.7 32.5 313 37-373 192-616 (636)
16 2xr1_A Cleavage and polyadenyl 100.0 4.1E-31 1.4E-35 327.7 29.1 314 38-372 197-620 (640)
17 3bk2_A RNAse J, metal dependen 100.0 5.8E-30 2E-34 313.2 25.2 314 37-375 29-420 (562)
18 2az4_A Hypothetical protein EF 100.0 1.8E-29 6.1E-34 299.2 25.7 304 23-352 10-406 (429)
19 1fvi_A Chlorella virus DNA lig 100.0 1.6E-29 5.4E-34 285.3 19.2 172 957-1176 2-183 (297)
20 3vnn_A DNA ligase 4; non-homol 100.0 3.7E-29 1.3E-33 251.4 8.4 132 981-1122 1-138 (139)
21 2i7x_A Protein CFT2; polyadeny 99.9 2.9E-22 1E-26 250.3 21.9 208 36-258 13-292 (717)
22 1ckm_A MRNA capping enzyme; nu 99.9 9.2E-23 3.2E-27 233.0 9.2 148 976-1176 72-232 (330)
23 1p16_A GTP--RNA, mRNA capping 99.8 1.7E-22 5.6E-27 236.6 4.5 160 974-1176 55-239 (395)
24 1zkp_A Hypothetical protein BA 99.8 4.8E-19 1.6E-23 196.2 16.1 209 22-248 27-259 (268)
25 3kyh_C MRNA-capping enzyme sub 99.8 1.3E-19 4.5E-24 212.0 11.0 163 974-1176 60-247 (461)
26 2cbn_A Ribonuclease Z; phospho 99.8 1.5E-18 5E-23 195.7 15.1 159 22-187 4-239 (306)
27 1y44_A Ribonuclease Z; zinc-de 99.8 1.5E-18 5.3E-23 197.0 14.4 159 22-187 3-237 (320)
28 3rtx_A MRNA-capping enzyme; gu 99.8 2.8E-19 9.6E-24 204.2 7.2 154 977-1176 61-232 (343)
29 3g1p_A Protein PHNP; C-P lyase 99.7 4E-17 1.4E-21 180.1 12.4 166 34-208 35-213 (258)
30 3zwf_A Zinc phosphodiesterase 99.7 9.2E-17 3.2E-21 186.7 12.3 161 22-187 3-279 (368)
31 2e7y_A TRNAse Z; tRNA maturati 99.7 2.5E-16 8.6E-21 174.7 14.2 186 44-248 17-271 (280)
32 3md7_A Beta-lactamase-like; ss 99.7 2E-15 6.9E-20 169.8 19.7 157 35-208 60-253 (293)
33 3jxp_A Coenzyme PQQ synthesis 99.6 3.6E-15 1.2E-19 170.2 12.1 146 34-186 37-227 (321)
34 3kl7_A Putative metal-dependen 99.5 3.8E-13 1.3E-17 146.7 14.5 175 37-248 36-231 (235)
35 2vug_A PAB1020; RNA, ligase, A 99.4 9.4E-13 3.2E-17 152.8 15.9 145 978-1162 94-242 (389)
36 3rpc_A Possible metal-dependen 99.4 5.2E-12 1.8E-16 139.8 17.8 190 38-248 12-255 (264)
37 3qwu_A DNA ligase; structural 99.3 1.7E-11 5.8E-16 139.4 14.9 167 951-1162 49-222 (370)
38 3bv6_A Metal-dependent hydrola 99.3 4.9E-11 1.7E-15 139.0 17.0 117 59-184 132-276 (379)
39 2wyl_A L-ascorbate-6-phosphate 99.2 6.1E-11 2.1E-15 137.3 16.7 117 59-184 108-251 (360)
40 1vjn_A Zn-dependent hydrolase 99.1 2E-10 6.9E-15 123.9 13.5 116 36-183 18-147 (220)
41 2r2d_A AGR_PTI_140P, Zn-depend 99.1 2.2E-10 7.5E-15 126.7 13.6 96 60-161 103-218 (276)
42 3m8t_A 'BLR6230 protein; subcl 99.1 1.2E-10 4.1E-15 129.9 10.9 123 37-160 54-206 (294)
43 1k07_A FEZ-1 beta-lactamase; m 99.1 2.9E-10 9.8E-15 125.2 11.9 122 37-159 24-177 (263)
44 3dha_A N-acyl homoserine lacto 99.1 5.8E-10 2E-14 121.9 14.0 95 60-161 100-200 (254)
45 1e5d_A Rubredoxin\:oxygen oxid 99.1 1.1E-10 3.7E-15 136.4 8.6 114 38-158 35-167 (402)
46 1ycg_A Nitric oxide reductase; 99.1 3.5E-10 1.2E-14 131.9 11.8 115 37-158 35-168 (398)
47 3l6n_A Metallo-beta-lactamase; 99.1 2.8E-10 9.6E-15 121.5 9.6 113 38-159 31-161 (219)
48 2ohh_A Type A flavoprotein FPR 99.0 4.4E-10 1.5E-14 131.3 11.3 114 38-158 35-172 (404)
49 3adr_A Putative uncharacterize 99.0 2.3E-10 7.9E-15 125.4 7.7 120 32-160 14-169 (261)
50 3hnn_A Putative diflavin flavo 99.0 2.2E-10 7.6E-15 126.5 7.0 112 39-157 44-175 (262)
51 2xf4_A Hydroxyacylglutathione 99.0 1.7E-10 5.8E-15 122.5 4.7 116 38-160 13-155 (210)
52 1ztc_A Hypothetical protein TM 99.0 6.1E-10 2.1E-14 119.7 8.9 117 36-161 33-179 (221)
53 3esh_A Protein similar to meta 99.0 1E-09 3.5E-14 122.1 9.5 118 36-162 46-212 (280)
54 1m2x_A Class B carbapenemase B 99.0 1.2E-09 4.1E-14 117.2 9.6 114 38-160 27-158 (223)
55 2zo4_A Metallo-beta-lactamase 98.9 7.9E-10 2.7E-14 124.8 7.8 119 35-160 19-194 (317)
56 4ax1_B Metallo-beta-lactamase 98.9 2.4E-09 8.2E-14 119.6 11.6 120 38-159 58-209 (303)
57 2q9u_A A-type flavoprotein; fl 98.9 1.7E-09 5.7E-14 127.1 10.4 114 38-158 41-173 (414)
58 1sml_A Protein (penicillinase) 98.9 3E-09 1E-13 117.4 11.7 121 37-159 37-187 (269)
59 4hl2_A Beta-lactamase NDM-1; s 98.9 2.7E-10 9.2E-15 124.0 2.3 117 37-160 47-185 (243)
60 1a7t_A Metallo-beta-lactamase; 98.9 1.4E-09 4.7E-14 117.6 7.7 114 38-160 37-168 (232)
61 1mqo_A Beta-lactamase II; alph 98.9 1.4E-09 4.6E-14 117.1 7.2 114 38-160 41-172 (227)
62 2zwr_A Metallo-beta-lactamase 98.9 6.9E-10 2.4E-14 117.8 4.7 114 37-160 12-148 (207)
63 3aj3_A MLR6805 protein, 4-pyri 98.9 3.5E-09 1.2E-13 117.0 10.2 116 38-161 35-212 (274)
64 2vw8_A PA1000, PQSE; quinolone 98.9 1.9E-09 6.4E-14 121.3 7.8 115 37-158 23-182 (303)
65 4ad9_A Lactb2, beta-lactamase- 98.8 1.1E-09 3.9E-14 122.2 4.9 117 35-159 29-168 (289)
66 4efz_A Metallo-beta-lactamase 98.8 3.3E-09 1.1E-13 119.3 8.2 125 35-161 14-179 (298)
67 1xm8_A Glyoxalase II; structur 98.8 1.9E-09 6.4E-14 118.8 5.4 107 40-160 14-135 (254)
68 2gcu_A Putative hydroxyacylglu 98.8 3.8E-09 1.3E-13 115.8 7.2 113 36-160 13-146 (245)
69 1p9e_A Methyl parathion hydrol 98.8 5.5E-09 1.9E-13 119.4 7.8 115 40-161 99-260 (331)
70 2p18_A Glyoxalase II; metallop 98.8 6.7E-09 2.3E-13 117.8 8.4 110 40-160 42-184 (311)
71 2y8b_A Metallo-B-lactamase; hy 98.8 8.6E-09 2.9E-13 114.0 8.5 115 39-160 69-201 (265)
72 3tp9_A Beta-lactamase and rhod 98.8 2.4E-09 8.1E-14 128.4 3.7 124 37-161 15-154 (474)
73 2fhx_A SPM-1; metallo-beta-lac 98.8 8.3E-09 2.8E-13 112.0 7.6 115 38-159 30-187 (246)
74 2bib_A CBPE, teichoic acid pho 98.7 1.5E-08 5.3E-13 123.5 10.4 163 59-249 76-280 (547)
75 3q6v_A Beta-lactamase; metallo 98.7 7E-09 2.4E-13 111.4 6.5 114 39-160 27-172 (233)
76 1qh5_A Glyoxalase II, protein 98.7 8.9E-09 3.1E-13 113.8 7.1 108 40-159 14-137 (260)
77 2qed_A Hydroxyacylglutathione 98.7 1.8E-08 6.1E-13 111.3 8.5 104 39-160 20-138 (258)
78 3iog_A Beta-lactamase; hydrola 98.7 1.3E-08 4.3E-13 109.0 6.1 110 38-157 23-166 (227)
79 1jjt_A IMP-1 metallo beta-lact 98.7 1.2E-08 4E-13 110.1 5.4 112 38-159 33-161 (228)
80 4dik_A Flavoprotein; TM0755, e 98.7 4.5E-08 1.5E-12 115.1 10.7 108 39-157 53-181 (410)
81 3r2u_A Metallo-beta-lactamase 98.6 7.6E-09 2.6E-13 123.8 3.5 124 34-161 33-174 (466)
82 2cfu_A SDSA1; SDS-hydrolase, l 98.5 2.5E-07 8.4E-12 115.2 9.8 116 38-160 123-303 (658)
83 4eyb_A Beta-lactamase NDM-1; m 98.4 1.1E-07 3.8E-12 105.4 5.4 114 40-160 77-212 (270)
84 2p97_A Hypothetical protein; p 98.2 4E-07 1.4E-11 96.2 1.6 108 37-161 23-142 (201)
85 2p4z_A Metal-dependent hydrola 98.2 4.3E-06 1.5E-10 93.4 9.9 127 38-184 33-200 (284)
86 1ta8_A DNA ligase, NAD-depende 98.1 5.8E-06 2E-10 93.5 9.8 173 959-1162 84-294 (332)
87 1b04_A Protein (DNA ligase); D 98.0 6.1E-06 2.1E-10 92.9 8.4 168 979-1176 107-304 (318)
88 2yhe_A SEC-alkyl sulfatase; hy 97.3 7.5E-07 2.6E-11 110.6 0.0 114 39-159 134-313 (668)
89 1zau_A DNA ligase; AMP; HET: D 97.6 4.7E-06 1.6E-10 94.2 -2.0 174 959-1162 87-303 (328)
90 1s68_A RNA ligase 2; ribonucle 97.6 9.5E-05 3.2E-09 81.1 8.1 109 975-1108 24-145 (249)
91 4glw_A DNA ligase; inhibitor, 97.6 5.5E-05 1.9E-09 85.1 6.1 170 959-1161 74-280 (305)
92 2hvq_A ORF1, hypothetical 37.6 97.6 0.00019 6.6E-09 81.9 10.3 109 975-1108 25-146 (335)
93 3uq8_A DNA ligase; adenylated 97.2 0.0016 5.5E-08 73.4 11.8 155 979-1162 107-292 (322)
94 3jsl_A DNA ligase; NAD+-depend 97.1 0.00035 1.2E-08 78.6 6.0 157 978-1162 104-286 (318)
95 4e6n_A Metallophosphoesterase; 97.1 0.0076 2.6E-07 67.8 15.5 186 969-1162 68-334 (427)
96 4glx_A DNA ligase; inhibitor, 96.8 0.0028 9.7E-08 77.0 9.9 155 979-1162 108-293 (586)
97 1xk5_A Snurportin-1; protein-R 96.7 0.0032 1.1E-07 66.2 8.6 157 959-1171 5-174 (204)
98 2owo_A DNA ligase; protein-DNA 96.2 0.0068 2.3E-07 74.7 8.2 153 980-1162 109-293 (671)
99 3gjx_B Snurportin-1; transport 96.2 0.011 3.7E-07 66.5 9.0 159 959-1171 106-275 (365)
100 3h3e_A Uncharacterized protein 96.1 0.0061 2.1E-07 67.4 6.7 53 38-93 30-93 (267)
101 1xdn_A RNA editing ligase MP52 96.0 0.014 4.9E-07 63.7 8.9 125 977-1108 31-190 (277)
102 1dgs_A DNA ligase; AMP complex 95.9 0.018 6.1E-07 71.0 9.9 172 959-1162 80-291 (667)
103 3sgi_A DNA ligase; HET: DNA AM 95.8 0.0029 1E-07 76.9 2.2 153 980-1162 117-303 (615)
104 2hiv_A Thermostable DNA ligase 95.2 0.045 1.5E-06 67.5 9.9 94 823-940 19-120 (621)
105 2dah_A Ubiquilin-3; UBA domain 94.0 0.034 1.1E-06 46.2 3.3 48 587-637 7-54 (54)
106 3gde_A DNA ligase; DNA-binding 93.5 0.18 6.3E-06 61.2 10.0 70 825-897 4-81 (558)
107 2dal_A Protein KIAA0794; FAS a 93.1 0.063 2.1E-06 45.9 3.6 43 589-634 15-57 (62)
108 2c5u_A RNA ligase, T4 RNA liga 93.0 0.45 1.5E-05 54.9 11.8 132 979-1162 93-236 (375)
109 1x9n_A DNA ligase I; 5'-adenyl 93.0 0.19 6.4E-06 62.6 9.2 73 822-897 53-135 (688)
110 2cfm_A Thermostable DNA ligase 92.7 0.25 8.5E-06 60.1 9.5 91 826-940 2-99 (561)
111 1v92_A NSFL1 cofactor P47; 3-h 92.3 0.095 3.3E-06 41.7 3.5 41 589-632 5-45 (46)
112 1vej_A Riken cDNA 4931431F19; 92.1 0.18 6E-06 44.6 5.2 46 587-635 27-72 (74)
113 1wr1_B Ubiquitin-like protein 91.8 0.14 4.8E-06 43.1 4.1 44 586-632 14-57 (58)
114 2bwb_A Ubiquitin-like protein 91.7 0.12 4E-06 41.5 3.3 41 587-630 5-45 (46)
115 2jy5_A Ubiquilin-1; UBA, alter 91.2 0.22 7.5E-06 41.0 4.5 43 587-632 10-52 (52)
116 2knz_A Ubiquilin-4; cytoplasm, 90.2 0.22 7.5E-06 41.1 3.6 44 586-632 8-51 (53)
117 2dzl_A Protein FAM100B; UBA-li 89.8 0.21 7E-06 43.2 3.3 40 591-633 19-58 (66)
118 1vg5_A RSGI RUH-014, rhomboid 87.8 0.78 2.7E-05 40.4 5.6 47 584-634 24-70 (73)
119 2dam_A ETEA protein; KIAA0887, 87.8 0.4 1.4E-05 41.6 3.7 44 589-634 18-61 (67)
120 1z96_A DNA-damage, UBA-domain 87.2 0.39 1.3E-05 36.8 3.0 38 588-629 3-40 (40)
121 2dna_A Unnamed protein product 85.1 0.97 3.3E-05 39.1 4.7 47 586-635 16-62 (67)
122 4htp_A DNA ligase 4; helical d 84.8 2.2 7.5E-05 46.2 8.6 105 823-940 12-134 (240)
123 1wiv_A UBP14, ubiquitin-specif 83.0 1.1 3.6E-05 39.6 4.2 46 587-636 27-72 (73)
124 1veg_A NEDD8 ultimate buster-1 81.0 1.6 5.4E-05 39.4 4.6 42 589-634 29-70 (83)
125 1wgn_A UBAP1, ubiquitin associ 78.2 0.85 2.9E-05 38.5 1.7 46 588-637 18-63 (63)
126 2cwb_A Chimera of immunoglobul 74.0 1.8 6.1E-05 41.0 3.0 43 588-633 65-107 (108)
127 1ify_A HHR23A, UV excision rep 73.2 2 6.7E-05 34.8 2.6 40 587-630 6-45 (49)
128 3l2p_A DNA ligase 3; DNA ligas 68.3 12 0.00041 45.6 9.3 72 823-897 5-84 (579)
129 1otr_A Protein CUE2; protein-p 67.7 4.1 0.00014 33.0 3.4 41 589-631 4-44 (49)
130 1q02_A Sequestosome 1; helical 67.2 3.8 0.00013 33.3 3.0 46 581-628 2-47 (52)
131 1z96_A DNA-damage, UBA-domain 65.9 5.4 0.00019 30.2 3.7 36 455-493 5-40 (40)
132 2g3q_A Protein YBL047C; endocy 63.7 4.4 0.00015 31.5 2.8 38 590-631 5-42 (43)
133 2di0_A Activating signal coint 60.3 14 0.00046 32.3 5.4 45 449-494 8-52 (71)
134 1wj7_A Hypothetical protein (R 58.9 23 0.00078 33.2 7.1 39 454-494 39-77 (104)
135 2dai_A Ubadc1, ubiquitin assoc 57.4 12 0.0004 33.8 4.7 43 588-634 28-70 (83)
136 2ekk_A UBA domain from E3 ubiq 57.0 6.1 0.00021 31.4 2.6 40 588-632 8-47 (47)
137 1dv0_A DNA repair protein HHR2 56.9 4.3 0.00015 32.5 1.6 40 590-633 5-44 (47)
138 2cpw_A CBL-interacting protein 56.9 7.2 0.00025 33.3 3.2 41 590-634 20-61 (64)
139 1wji_A Tudor domain containing 55.2 6.1 0.00021 33.6 2.4 40 590-633 10-49 (63)
140 1ify_A HHR23A, UV excision rep 55.2 15 0.0005 29.6 4.6 39 453-494 7-45 (49)
141 2dak_A Ubiquitin carboxyl-term 55.1 5 0.00017 34.1 1.9 41 589-633 9-49 (63)
142 3bq3_A Defective in cullin ned 54.8 5.6 0.00019 43.7 2.7 43 589-634 15-57 (270)
143 1vg5_A RSGI RUH-014, rhomboid 52.1 13 0.00043 32.7 4.0 38 454-494 29-66 (73)
144 1wj7_A Hypothetical protein (R 51.5 9.7 0.00033 35.6 3.3 41 589-632 39-79 (104)
145 2g3q_A Protein YBL047C; endocy 51.4 14 0.00049 28.6 3.8 37 455-494 5-41 (43)
146 3e21_A HFAF1, FAS-associated f 48.1 13 0.00045 29.5 3.1 40 589-630 5-44 (45)
147 1vek_A UBP14, ubiquitin-specif 46.5 12 0.00042 33.7 3.1 44 587-634 27-71 (84)
148 2d9s_A CBL E3 ubiquitin protei 46.1 13 0.00044 30.5 2.8 36 590-629 10-45 (53)
149 2dal_A Protein KIAA0794; FAS a 45.7 19 0.00064 30.5 3.9 51 442-495 4-54 (62)
150 1wgl_A TOLL-interacting protei 43.2 19 0.00065 30.2 3.5 41 453-494 8-48 (59)
151 1v92_A NSFL1 cofactor P47; 3-h 42.8 26 0.00088 27.3 4.1 37 456-494 7-43 (46)
152 1wji_A Tudor domain containing 42.5 24 0.00084 29.9 4.2 37 455-494 10-46 (63)
153 2cp8_A NEXT to BRCA1 gene 1 pr 40.6 21 0.00072 29.5 3.3 47 587-636 7-53 (54)
154 1otr_A Protein CUE2; protein-p 39.7 24 0.00082 28.5 3.5 40 455-495 5-44 (49)
155 2ooa_A E3 ubiquitin-protein li 39.5 16 0.00056 29.8 2.4 33 591-627 13-45 (52)
156 2knz_A Ubiquilin-4; cytoplasm, 39.3 26 0.00088 28.6 3.7 37 455-494 12-49 (53)
157 2dkl_A Trinucleotide repeat co 38.4 34 0.0012 30.9 4.7 42 589-634 21-62 (85)
158 1wgn_A UBAP1, ubiquitin associ 38.2 18 0.00062 30.6 2.6 31 464-494 26-56 (63)
159 2dag_A Ubiquitin carboxyl-term 37.6 18 0.00063 31.7 2.7 42 589-634 9-51 (74)
160 2dah_A Ubiquilin-3; UBA domain 36.5 18 0.00062 29.8 2.3 37 455-494 10-47 (54)
161 2jy5_A Ubiquilin-1; UBA, alter 36.3 20 0.00068 29.2 2.5 37 455-494 13-50 (52)
162 2bwb_A Ubiquitin-like protein 35.5 20 0.00069 28.4 2.4 37 455-494 8-45 (46)
163 2i7x_A Protein CFT2; polyadeny 35.1 20 0.00067 44.9 3.5 41 314-354 649-689 (717)
164 2dak_A Ubiquitin carboxyl-term 34.5 34 0.0012 28.9 3.8 39 454-495 9-47 (63)
165 1ufz_A Hypothetical protein BA 33.0 39 0.0013 30.3 4.0 41 457-497 37-77 (83)
166 1whc_A RSGI RUH-027, UBA/UBX 3 31.4 19 0.00065 30.6 1.7 40 590-633 10-50 (64)
167 1wr1_B Ubiquitin-like protein 30.6 44 0.0015 27.9 3.8 37 455-494 18-55 (58)
168 2lbc_A Ubiquitin carboxyl-term 29.4 33 0.0011 33.0 3.3 41 589-633 78-118 (126)
169 2cp9_A EF-TS, EF-TSMT, elongat 28.7 24 0.00082 30.2 1.9 39 453-493 8-46 (64)
170 1wiv_A UBP14, ubiquitin-specif 27.9 33 0.0011 30.0 2.7 39 454-495 29-67 (73)
171 2dzl_A Protein FAM100B; UBA-li 26.5 95 0.0032 26.5 5.3 37 456-494 19-55 (66)
172 1veg_A NEDD8 ultimate buster-1 26.4 38 0.0013 30.4 2.9 38 455-495 30-67 (83)
173 2dna_A Unnamed protein product 26.2 33 0.0011 29.6 2.3 35 460-494 22-57 (67)
174 2dai_A Ubadc1, ubiquitin assoc 24.9 66 0.0023 28.8 4.2 39 454-495 29-67 (83)
175 1dv0_A DNA repair protein HHR2 24.4 34 0.0012 27.2 1.9 31 465-495 12-42 (47)
176 1vej_A Riken cDNA 4931431F19; 24.1 41 0.0014 29.5 2.6 37 455-494 30-67 (74)
177 2dag_A Ubiquitin carboxyl-term 23.8 69 0.0024 28.0 4.0 40 454-496 9-49 (74)
178 2crn_A Ubash3A protein; compac 23.3 32 0.0011 29.2 1.7 40 590-633 10-50 (64)
179 1wgl_A TOLL-interacting protei 22.8 61 0.0021 27.1 3.3 44 589-634 9-52 (59)
180 2dhy_A CUE domain-containing p 22.3 78 0.0027 27.2 3.9 41 453-494 17-57 (67)
181 2dkl_A Trinucleotide repeat co 21.2 84 0.0029 28.3 4.1 41 455-498 22-62 (85)
182 1vjn_A Zn-dependent hydrolase 20.5 63 0.0021 33.8 3.7 28 326-353 149-176 (220)
183 3rpc_A Possible metal-dependen 20.2 63 0.0022 34.5 3.7 27 326-352 202-228 (264)
184 2ooa_A E3 ubiquitin-protein li 20.2 71 0.0024 26.1 3.0 33 462-494 16-48 (52)
No 1
>1x9n_A DNA ligase I; 5'-adenylated nicked DNA, protein-DNA complex, L complex; HET: DNA DOC AMP; 3.00A {Homo sapiens} SCOP: a.235.1.1 b.40.4.6 d.142.2.1
Probab=100.00 E-value=6e-83 Score=789.12 Aligned_cols=469 Identities=39% Similarity=0.714 Sum_probs=419.5
Q ss_pred ccCCCCCCCcccccccCCCCCcchHHHHHHHHHHHhhhchHHHHHHHHHHHHhhhcCCCCChhhHHHHhcccCCCCCccc
Q 001045 692 VSLPPEKYDPIEHACWSSGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENI 771 (1176)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~g~~~~F~~l~~~~~~i~~t~~r~~k~~~L~~~~r~~~~~~p~dl~~~v~l~~~~l~P~~~~~ 771 (1176)
.+.+...|+|..++||..|++|||..||++|++|++|++|++|+++|++||+.++..+|+|+.+++||++|+|+|+|+++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~i~~t~~r~~k~~~l~~~~~~~~~~~~~dl~~~v~ll~g~l~P~~~~~ 114 (688)
T 1x9n_A 35 YNPAKNNYHPVEDACWKPGQKVPYLAVARTFEKIEEVSARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNHLGPPQQGL 114 (688)
T ss_dssp CCTTCSSCCHHHHCCSCTTSCCBHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHTCSSCGGGCC
T ss_pred cccCcccCCccccccccCCCCccHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhcCChHHHHHHHHHHcCCCCcccccc
Confidence 66789999999999999999999999999999999999999999999999999888899999999999999999999999
Q ss_pred ccccchhhHHHHHHHHhCCChHHHHHHHHhcCChHHHHHHHHhhccccCCCCCCcHHHHHHHHHHhhhhcCCCchHHHHH
Q 001045 772 ELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQALLAPPPPLLIKDVYSMLCKISVQTGSGSTARKKS 851 (1176)
Q Consensus 772 elgige~~L~kal~~~~g~~~~~i~~~~~~~GDlG~va~~~~~~q~~l~~~~~LTi~eV~~~L~~IA~~~g~~s~~~K~~ 851 (1176)
+||||+++|++++++++|++.+.+++.|++.||||+||+.++++|+++.++++|||.+|++.|++||..+|++|+.+|..
T Consensus 115 elgi~~~~L~k~i~~~~g~~~~~~~~~~~~~GDlg~va~~~~~~~~~~~~~~~lTv~~V~~~L~~ia~~~g~~s~~~k~~ 194 (688)
T 1x9n_A 115 ELGVGDGVLLKAVAQATGRQLESVRAEAAEKGDVGLVAENSRSTQRLMLPPPPLTASGVFSKFRDIARLTGSASTAKKID 194 (688)
T ss_dssp CCCCCHHHHHHHHHHHHTCCHHHHHHHHHHHTCHHHHTCC--------CCCSCCBHHHHHHHHHHHHHCCSTTHHHHHHH
T ss_pred ccCcChHHHHHHHHHHHCcCHHHHHHHHHhcCCHHHHHHHHHhcccccCCCCCCcHHHHHHHHHHHHhhcCcchHHHHHH
Confidence 99999999999999999999999999999999999999999988888888899999999999999999999999999999
Q ss_pred HHHHHHhhcchhhHHHHHHHHhhccccCcchhhHHHHHHHhhccCccccc--------ccccchhHHHHHHHHHHHHHHH
Q 001045 852 LIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQAVVMNSSLEF--------SHEGKMENLKEKLQSLSAAAVE 923 (1176)
Q Consensus 852 il~~Ll~~~~~~E~k~LvRiIlk~LRiG~~~~tvl~aLa~A~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~v~~ 923 (1176)
+|..||.+|++.|++||+|+|+++||||+++++|+.|||+||.++++... ....+.+.+++.++.....+++
T Consensus 195 ~l~~ll~~~~~~E~k~l~Rli~~~lRiG~~~~~vl~ala~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 274 (688)
T 1x9n_A 195 IIKGLFVACRHSEARFIARSLSGRLRLGLAEQSVLAALSQAVSLTPPGQEFPPAMVDAGKGKTAEARKTWLEEQGMILKQ 274 (688)
T ss_dssp HHHHHHHHCCSTHHHHHHHHHTTCCCCSCCHHHHHHHHHHHHHHSCTTCCSSCSCSCTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHhcccccCccHHHHHHHHHHHhccCccccccchhhhhhhcccchhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987752110 0111234566778888889999
Q ss_pred HHhhCCChHHHHHHHhccccCCCccccCcCCCCCccCCCCcccCChhHHHHhccCceEEEEEecceeEEEEEEeeCCeEE
Q 001045 924 AYNILPSLDLLIPSLMNKGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVR 1003 (1176)
Q Consensus 924 ay~~~pdl~~v~~~L~~~g~~~~~~~~~l~~g~Pi~PMLA~~~~~~~~~~~~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ 1003 (1176)
+|+.+|||+.|++.|++.|+..+...|.++||+|++||||+++++++++++++++..|++|+||||+|||+|++.+|.|+
T Consensus 275 ~~~~~p~~~~l~~~l~~~g~~~l~~~~~~~~g~pv~PMLA~~~~~~~~~l~~~~~~~~~~E~K~DG~R~qih~~~~g~v~ 354 (688)
T 1x9n_A 275 TFCEVPDLDRIIPVLLEHGLERLPEHCKLSPGIPLKPMLAHPTRGISEVLKRFEEAAFTCEYKYDGQRAQIHALEGGEVK 354 (688)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHHTGGGCCCCTTSCCCCCEEEEESSHHHHHHHTTTSCEEEEEEESSEEEEEEECTTSCEE
T ss_pred HHhhCCCHHHHHHHHHhcchhhcccccCcCCCCCccCccCCccCCHHHHHhhcCCCeEEEEEccccEeEEEEEcCCCeEE
Confidence 99999999999999998887666678999999999999999999999999999989999999999999999996567899
Q ss_pred EEcCCCccCCCCchhHHHHHHhhcCCCCCCeEEEEEEEEEecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEE
Q 001045 1004 IFSRNGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVF 1083 (1176)
Q Consensus 1004 ifSR~g~d~T~~ypdl~~~l~~~~~~~~~~~ILDGElVa~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vF 1083 (1176)
+|||+|+++|.+||++.+.++.++.+...++|||||||+||+.+| +++|||.|++|.|+.. .......+++|++|
T Consensus 355 l~SR~g~d~t~~fPel~~~l~~~~~~~~~~~ILDGElV~~d~~~g-~~~~F~~L~~r~r~~~----~~~~~~~~v~~~vF 429 (688)
T 1x9n_A 355 IFSRNQEDNTGKYPDIISRIPKIKLPSVTSFILDTEAVAWDREKK-QIQPFQVLTTRKRKEV----DASEIQVQVCLYAF 429 (688)
T ss_dssp EECTTSCBCTTTCHHHHHTSGGGBCTTCCCEEEEEEEEEECTTTC-SBCCHHHHTTSCSSCC----CGGGCCSEEEEEEE
T ss_pred EEeCCCCcccccchHHHHHHHHhhccCCCCeEEeEEEEEEeCCCC-CcCCHHHHHHHhhccc----chhhcccceEEEEE
Confidence 999999999999999999988877666789999999999997664 7899999999976532 22344678999999
Q ss_pred EeeeeCCcccccCCHHHHHHHHHHhhcccCCCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhCCCceEEEecCCC
Q 001045 1084 DIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDV 1163 (1176)
Q Consensus 1084 DiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~g~EGlmvK~ld~ 1163 (1176)
||||+||++|+++||.+||++|++++ .+.++++.++++..+ .+.++++++|+++++.|+||||+|+++.
T Consensus 430 DlL~l~G~~l~~~Pl~eRr~~L~~~~-~~~~~~i~~~~~~~~----------~~~~~~~~~~~~a~~~g~EGlV~K~~~~ 498 (688)
T 1x9n_A 430 DLIYLNGESLVREPLSRRRQLLRENF-VETEGEFVFATSLDT----------KDIEQIAEFLEQSVKDSCEGLMVKTLDV 498 (688)
T ss_dssp EEEEETTEECTTSCHHHHHHHHHHHB-CCBTTTEEECCEECC----------CCHHHHHHHHHHHHHTSEEEEEEEESSS
T ss_pred echhhcCCccccCCHHHHHHHHHHhh-ccCCCcEEEEeeEec----------CCHHHHHHHHHHHHhcCCceeEEeeccc
Confidence 99999999999999999999999999 555678999887653 5789999999999999999999999933
Q ss_pred CCCcccCCCCCCC
Q 001045 1164 DAGYSPSKRSDSW 1176 (1176)
Q Consensus 1164 ~s~Y~pGkRs~~W 1176 (1176)
+|+|+||+|+.+|
T Consensus 499 ds~Y~~GkRs~~W 511 (688)
T 1x9n_A 499 DATYEIAKRSHNW 511 (688)
T ss_dssp SCSSCTTTCSEEE
T ss_pred CCCCCCCCcCchH
Confidence 4999999999888
No 2
>2hiv_A Thermostable DNA ligase; ATP-dependent, open conformation; 2.05A {Sulfolobus solfataricus} PDB: 2hix_A*
Probab=100.00 E-value=7.1e-77 Score=729.96 Aligned_cols=430 Identities=30% Similarity=0.489 Sum_probs=380.3
Q ss_pred cccCCCCCcchHHHHHHHHHHHhhhchHHHHHHHHHHHHhhhcCCCCChhhHHHHhcccCCCCCccc-ccccchhhHHHH
Q 001045 705 ACWSSGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENI-ELNIGGSLVTSA 783 (1176)
Q Consensus 705 ~~~~~g~~~~F~~l~~~~~~i~~t~~r~~k~~~L~~~~r~~~~~~p~dl~~~v~l~~~~l~P~~~~~-elgige~~L~ka 783 (1176)
..|+.|++|||..||++|++|++|++|++|+++|++||+.. +|+++.+++||++|+|+|+|+++ +||||+++|+++
T Consensus 13 ~~~~~~~~~~f~~~~~~~~~l~~t~~r~~k~~~l~~~~~~~---~~~d~~~~~~ll~~~l~P~~~~~~~~gi~~~~L~k~ 89 (621)
T 2hiv_A 13 GLVPRGSHMEFKVIAEYFDKLEKISSRLQLTALLADLLSKS---DKTIIDKVVYIIQGKLWPDFLGYPELGIGEKFLIKA 89 (621)
T ss_dssp --------CBTHHHHHHHHHHHHCCCHHHHHHHHHHHHHTS---CGGGHHHHHHHTTTCSSCGGGCCCCCCCCHHHHHHH
T ss_pred CCCCCCCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHhc---CchHHHHHHHHHhCCcCcccccccccCCCHHHHHHH
Confidence 36999999999999999999999999999999999999995 78999999999999999999998 999999999999
Q ss_pred HHHHhCCChHHHHHHHHhcCChHHHHHHHHhhcc--cc------CCCCCCcHHHHHHHHHHhhhhcCCCchHHHHHHHHH
Q 001045 784 IEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQA--LL------APPPPLLIKDVYSMLCKISVQTGSGSTARKKSLIVN 855 (1176)
Q Consensus 784 l~~~~g~~~~~i~~~~~~~GDlG~va~~~~~~q~--~l------~~~~~LTi~eV~~~L~~IA~~~g~~s~~~K~~il~~ 855 (1176)
+++++|++++.+++.|++.||||+||+.+++++. ++ .++++|||.+|++.|++||..+|++|+.+|..+|..
T Consensus 90 ~~~~~g~~~~~~~~~~~~~GDlg~~a~~~~~~~~~~~~~~f~~~~~~~~ltv~~V~~~L~~la~~~g~~s~~~k~~~l~~ 169 (621)
T 2hiv_A 90 ISIATNTDENSVENLYKTIGDLGEVARRLKSKQQSTGILGFLGTTSKESLTVDEVYSTLSKVALTTGEGSRDLKIRLLAG 169 (621)
T ss_dssp HHHHHTCCHHHHHHHHHHHCCHHHHHHHHHHTC-------------CCCCBHHHHHHHHHHHHHCCSTTHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHhcCCHHHHHHHHHhhccccccccccccCCCCCCcHHHHHHHHHHHHhccCcccHHHHHHHHHH
Confidence 9999999999999999999999999999998765 33 257889999999999999999999999999999999
Q ss_pred HHhhcchhhHHHHHHHHhhccccCcchhhHHHHHHHhhccCcccccccccchhHHHHHHHHHHHHHHHHHhhCCChHHHH
Q 001045 856 LMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLI 935 (1176)
Q Consensus 856 Ll~~~~~~E~k~LvRiIlk~LRiG~~~~tvl~aLa~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~ay~~~pdl~~v~ 935 (1176)
||.+|++.|++||+|+|+++||||+++++|+.|||+||.... ..++.++++|+.+|||+.||
T Consensus 170 ll~~~~~~E~k~l~Rli~~~lRiG~~~~~vl~ala~a~~~~~------------------~~~~~v~~~~~~~~dl~~v~ 231 (621)
T 2hiv_A 170 LLKKADPLEAKFLVRFVEGRLRVGIGDATVLDAMAIAFGGGQ------------------SASEIIERAYNLRADLGNIA 231 (621)
T ss_dssp HHHHSCHHHHHHHHHHHHTCCCCCCCHHHHHHHHHHHHSSSG------------------GGHHHHHHHHHHSCCHHHHH
T ss_pred HHHhCCHHHHHHHHHHHcCCCccCccHHHHHHHHHHHhcccc------------------ccHHHHHHHHhcCCCHHHHH
Confidence 999999999999999999999999999999999999987321 13578999999999999999
Q ss_pred HHHhccccCCCccccCcCCCCCccCCCCcccCChhHHHHhccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCCCC
Q 001045 936 PSLMNKGIGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSR 1015 (1176)
Q Consensus 936 ~~L~~~g~~~~~~~~~l~~g~Pi~PMLA~~~~~~~~~~~~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~~ 1015 (1176)
+.|.+.|++.+ ..+.++||+|++||||+++++++++++++++ +|++|+||||+|||+|+ .+|.|++|||||+++|.+
T Consensus 232 ~~l~~~g~~~l-~~~~~~~~~pv~PmLA~~~~~~~~~l~~~~~-~~~~E~K~DG~R~qi~~-~g~~v~l~SR~g~~~t~~ 308 (621)
T 2hiv_A 232 KIIVEKGIEAL-KTLKPQVGIPIRPMLAERLSNPEEILKKMGG-NAIVDYKYDGERAQIHK-KEDKIFIFSRRLENITSQ 308 (621)
T ss_dssp HHHHHHCGGGG-TTCCCCTTSCCCCCEEEECSCHHHHHHHTTT-CEEEEEECSSEEEEEEE-ETTEEEEECTTCCBCGGG
T ss_pred HHHHhcCcccc-ccCCCCCCCCCCCeeCCccCchhHHHhhcCC-cEEEEEEEcceeEEEEE-cCCEEEEEcCCCcCcHhh
Confidence 99998887544 7899999999999999999999999988865 89999999999999999 589999999999999999
Q ss_pred chhHHHHHHhhcCCCCCCeEEEEEEEEEecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCccccc
Q 001045 1016 FPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLG 1095 (1176)
Q Consensus 1016 ypdl~~~l~~~~~~~~~~~ILDGElVa~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~ 1095 (1176)
||++.+.+.+.+ ...+||||||||+||+++| +++|||.|++| ++... +.......++||++|||||+||++|++
T Consensus 309 fP~l~~~~~~~l--~~~~~iLDGElv~~d~~~g-~~l~F~~L~~r-~~~~~--~~~~~~~~~v~~~vFDlL~l~G~~l~~ 382 (621)
T 2hiv_A 309 YPDVVDYVSKYI--EGKEFIIEGEIVAIDPESG-EMRPFQELMHR-KRKSD--IYEAIKEYPVNVFLFDLMYYEDVDYTT 382 (621)
T ss_dssp CHHHHHHHHHHB--CCSSEEEEEEEEEBCTTTC-CBCCTHHHHHH-HHCSC--HHHHHHHSCEEEEEEEEEEETTEECTT
T ss_pred hhhHHHHHHHhC--CCcCeEEeEEEEEeecCCC-CcCCHHHHhhh-ccccc--hhhhcccCceEEEEEeccccCCCcccc
Confidence 999999887654 2579999999999997665 78999999999 32222 223334678999999999999999999
Q ss_pred CCHHHHHHHHHHhhcccCCCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhCCCceEEEecCCCCCCcccCCCCCC
Q 001045 1096 YTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDS 1175 (1176)
Q Consensus 1096 ~Pl~eRr~lL~~~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~g~EGlmvK~ld~~s~Y~pGkRs~~ 1175 (1176)
+||.+||++|++++ .+ .+++.++++..+ .+.++++++|+++++.|+||||+|+++.+|+|+||+|+.+
T Consensus 383 ~pl~eRr~~L~~~~-~~-~~~i~~~~~~~~----------~~~~~~~~~~~~~~~~g~EGlv~K~~~~ds~Y~~G~Rs~~ 450 (621)
T 2hiv_A 383 KPLEARRKLLESIV-KP-NDYVKIAHHIQA----------NNVEDLKSFFYRAISEGGEGVMVKAIGKDAIYQAGARGWL 450 (621)
T ss_dssp SCHHHHHHHHHHHB-CC-CSSEEECCEEEE----------SSHHHHHHHHHHHHHTTCCEEEEECCSTTCCCCTTCEEEE
T ss_pred CCHHHHHHHHHHHh-Cc-CCcEEEeeeEEe----------CCHHHHHHHHHHHHhcCCceEEEEecCCCCCccCCCcCCC
Confidence 99999999999999 44 378999988765 5789999999999999999999999933399999999988
Q ss_pred C
Q 001045 1176 W 1176 (1176)
Q Consensus 1176 W 1176 (1176)
|
T Consensus 451 W 451 (621)
T 2hiv_A 451 W 451 (621)
T ss_dssp E
T ss_pred e
Confidence 8
No 3
>3gde_A DNA ligase; DNA-binding domain, adenylation domain, OB-fold domain, ATP-binding, cell cycle, cell division, DNA damage, DNA recombination; HET: DNA; 2.30A {Archaeoglobus fulgidus}
Probab=100.00 E-value=4.2e-76 Score=713.69 Aligned_cols=415 Identities=26% Similarity=0.438 Sum_probs=374.4
Q ss_pred CCCcchHHHHHHHHHHHhhhchHHHHHHHHHHHHhhhcCCCC-ChhhHHHHhcccCCCCCcccccccchhhHHHHHHHHh
Q 001045 710 GQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPD-DVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEAC 788 (1176)
Q Consensus 710 g~~~~F~~l~~~~~~i~~t~~r~~k~~~L~~~~r~~~~~~p~-dl~~~v~l~~~~l~P~~~~~elgige~~L~kal~~~~ 788 (1176)
|..|+|..||++|++|++|++|++|+++|++||+.+ +|+ ++.+++||++|+++|+|++++||||+++|++++++++
T Consensus 1 ~~~m~~~~~a~~~~~i~~t~~r~~k~~~l~~~~~~~---~~~~~~~~~~~l~~g~~~p~~~~~~~gi~~~~l~~~~~~~~ 77 (558)
T 3gde_A 1 GSHMLFAEFAEFCERLEKISSTLELTARIAAFLQKI---EDERDLYDVVLFITGKVYPPWDERELGVGIGLLYEALENVS 77 (558)
T ss_dssp CCSCBHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTC---CSHHHHHHHHHHHTTCSSCTTSSCCCCCCHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC---CchhhHHHHHHHHcCCCCcccccceeCcChHHHHHHHHHHH
Confidence 346999999999999999999999999999999997 676 8899999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHhcCChHHHHHHHHh--hccccCCCCCCcHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHhhcchhhHH
Q 001045 789 GTNRSKIRDMYNRLGDLGDVAQECRQ--TQALLAPPPPLLIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMK 866 (1176)
Q Consensus 789 g~~~~~i~~~~~~~GDlG~va~~~~~--~q~~l~~~~~LTi~eV~~~L~~IA~~~g~~s~~~K~~il~~Ll~~~~~~E~k 866 (1176)
|++++.+++.|++.||+|++|+.+.+ .|.++. +++|||.+|++.|++||..+|++|+.+|..+|..||.+|++.|+|
T Consensus 78 g~~~~~~~~~~~~~GDlg~~a~~~~~~~~~~~~~-~~~ltv~~V~~~L~~la~~~g~~s~~~k~~~l~~l~~~~~~~E~~ 156 (558)
T 3gde_A 78 GVKRSEIESMIREYGDLGLVAEQLIKKKKMTTLA-FEELTVRKVRETFDEIASLTGEGSMKRKIMLLTGLYGLATPLEAR 156 (558)
T ss_dssp CCCHHHHHHHHHHHSCHHHHHHHHHHHHHHHSCC-CCCCBHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHHCCHHHHH
T ss_pred CcCHHHHHHHHHhcCCHHHHHHHHHhhccCCCCC-CCCCcHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHhCCHHHHH
Confidence 99999999999999999999999753 455554 678999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccccCcchhhHHHHHHHhhccCcccccccccchhHHHHHHHHHHHHHHHHHhhCCChHHHHHHHhccccCCC
Q 001045 867 FLVRTLVRNLRIGAMMRTILPALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMNKGIGFS 946 (1176)
Q Consensus 867 ~LvRiIlk~LRiG~~~~tvl~aLa~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~ay~~~pdl~~v~~~L~~~g~~~~ 946 (1176)
||+|+|+|+||||+++++|+.|||+||.+++ +.++++|+.+|||+.||+.|.+.|.+.
T Consensus 157 ~l~rli~~~lRiG~~~~~vl~ala~a~~~~~---------------------~~~~~~~~~~~dl~~v~~~l~~~g~~~- 214 (558)
T 3gde_A 157 YLTRLILNEMRLGVGEGIMRDAIARAFRADP---------------------ETVERAYMITNDLGRVAVVAKKEGEEG- 214 (558)
T ss_dssp HHHHHHTTCCCSSCCHHHHHHHHHHHTTCCH---------------------HHHHHHHHHHCCHHHHHHHHHHHHHHH-
T ss_pred HHHHHHhccccccccHHHHHHHHHHHhCCCH---------------------HHHHHHhccCCchHHHHHHHhhcCccc-
Confidence 9999999999999999999999999997654 578899999999999999998777543
Q ss_pred ccccCcCCCCCccCCCCcccCChhHHHHhccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCCCCchhHHHHHHhh
Q 001045 947 ASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEF 1026 (1176)
Q Consensus 947 ~~~~~l~~g~Pi~PMLA~~~~~~~~~~~~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~~ypdl~~~l~~~ 1026 (1176)
+..+.++||+|++||||+++++++++++++ .+|++|+||||+|||+|+ .+++|++|||||+++|.+||++++.+...
T Consensus 215 l~~~~~~~~~p~~PmLA~~~~~~~~~~~~~--~~~~~E~K~DG~R~qi~~-~g~~v~l~SR~g~d~t~~fPel~~~~~~~ 291 (558)
T 3gde_A 215 LRKMKIEIHIPVRMMLAQVAESLESAVREM--RTAAVEWKFDGSRVQVHW-DGSRVTIYSRRLENVTNALPDIVEEIKKS 291 (558)
T ss_dssp HHTCCCCTTSCCCCCEEEECSCHHHHHHHS--SSEEEEEECSSEEEEEEE-CSSCCEEEETTCCBCGGGCHHHHHHHHHH
T ss_pred ccccCCCCCCCCCCeeCCcCCChHHHhhhc--cceEEEEeEeeEEEEEEE-eCCEEEEEcCCCCcccccchHHHHHHHhh
Confidence 346999999999999999999999988887 479999999999999999 58899999999999999999999999885
Q ss_pred cCCCCCCeEEEEEEEEEecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHH
Q 001045 1027 CKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLK 1106 (1176)
Q Consensus 1027 ~~~~~~~~ILDGElVa~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~ 1106 (1176)
+. .+||||||||+|+ +| +++|||.|++|.++... +.....+.|++|++|||||+|| +|+++||.+||++|+
T Consensus 292 l~---~~~iLDGElv~~~--~g-~~~~F~~L~~r~~~~~~--~~~~~~~~pv~~~vFDlL~l~G-~l~~~pl~eRr~~L~ 362 (558)
T 3gde_A 292 VK---PGVILDGEVIAVK--EG-KPMPFQHVLRRFRRKHD--VAKMVEKIPLEAHFFDILYHDG-ECIDLPLRERRKLLE 362 (558)
T ss_dssp BC---SSEEEEEEEEEEE--TT-EEECHHHHHHHHHC--C--THHHHHHSCEEEEEEEEEEESS-BCTTSBHHHHHHHHH
T ss_pred CC---CCeEEEeEEEEcC--CC-cCCCHHHHHHHhccccc--hhhHhhcCCeEEEEEEEEeeCC-CccCCCHHHHHHHHH
Confidence 42 3499999999994 44 78899999999765332 2222346789999999999999 999999999999999
Q ss_pred HhhcccCCCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhCCCceEEEecCCCCCCcccCCCCCCC
Q 001045 1107 DLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176 (1176)
Q Consensus 1107 ~~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~g~EGlmvK~ld~~s~Y~pGkRs~~W 1176 (1176)
+++ .. ++++.++++..+ .+.++++++|+++++.|+||||+|+++ |+|+||+||.+|
T Consensus 363 ~~~-~~-~~~i~~~~~~~~----------~~~~~~~~~~~~~~~~g~EGlv~K~~d--s~Y~~G~Rs~~W 418 (558)
T 3gde_A 363 SAV-NE-SEKIKLAKQIVT----------DSVDEVRKMYDEAISAGHEGVMIKLPS--SPYIPGKRGKNW 418 (558)
T ss_dssp HHB-CC-CSSEEECCEEEE----------SCHHHHHHHHHHHHHTTCCEEEEECTT--CBCCTTCEEEEE
T ss_pred Hhc-CC-CCeEEEeeeEec----------CCHHHHHHHHHHHHHcCCceeEEecCC--CCCCCCCcCCce
Confidence 999 43 678999888764 578999999999999999999999998 999999999888
No 4
>2cfm_A Thermostable DNA ligase; protein-nucleotide complex, cell cycle, cell division, DNA damage, DNA recombination, DNA repair, DNA replication; HET: AMP; 1.8A {Pyrococcus furiosus} PDB: 3rr5_A*
Probab=100.00 E-value=5.6e-75 Score=707.01 Aligned_cols=416 Identities=25% Similarity=0.430 Sum_probs=378.9
Q ss_pred cchHHHHHHHHHHHhhhchHHHHHHHHHHHHhhhcCCCCChhhHHHHhcccCCCCCcccccccchhhHHHHHHHHhCCCh
Q 001045 713 APYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEACGTNR 792 (1176)
Q Consensus 713 ~~F~~l~~~~~~i~~t~~r~~k~~~L~~~~r~~~~~~p~dl~~~v~l~~~~l~P~~~~~elgige~~L~kal~~~~g~~~ 792 (1176)
|||..||++|++|++|++|++|+++|++||+.. +|+|+.+++||++|+++|+|++++||||+++|++++++++|+++
T Consensus 1 ~~f~~~a~~~~~l~~t~~r~~k~~~l~~~~~~~---~~~d~~~~~~ll~~~l~P~~~~~~~gi~~~~L~~~~~~~~g~~~ 77 (561)
T 2cfm_A 1 MRYLELAQLYQKLEKTTMKLIKTRLVADFLKKV---PDDHLEFIPYLILGEVFPEWDERELGVGEKLLIKAVAMATGIDA 77 (561)
T ss_dssp CBHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHS---CGGGTTTHHHHHTTCSSCTTCCCCCCCCHHHHHHHHHHHHSCCH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc---CchHHHHHHHHHhCCCCccccccccCCCHHHHHHHHHHHHCcCH
Confidence 689999999999999999999999999999995 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHhhcc--ccCCCCCCcHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHhhcchhhHHHHHH
Q 001045 793 SKIRDMYNRLGDLGDVAQECRQTQA--LLAPPPPLLIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVR 870 (1176)
Q Consensus 793 ~~i~~~~~~~GDlG~va~~~~~~q~--~l~~~~~LTi~eV~~~L~~IA~~~g~~s~~~K~~il~~Ll~~~~~~E~k~LvR 870 (1176)
+.+++.|++.||+|++|+.+++++. ++. +++|||.+|++.|++||..+|++|+.+|..+|..||.+|++.|++||+|
T Consensus 78 ~~~~~~~~~~GDlg~~~~~~~~~~~~~~~~-~~~ltv~~V~~~L~~la~~~g~~s~~~k~~~l~~ll~~~~~~e~~~l~r 156 (561)
T 2cfm_A 78 KEIEESVKDTGDLGESIALAVKKKKQKSFF-SQPLTIKRVYQTLVKVAETTGEGSQDKKVKYLADLFMDAEPLEAKYLAR 156 (561)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHTTTCCC-CCCCBHHHHHHHHHHHHHCCSSSHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHhccCcCcCcC-CCCCcHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999999999999987653 344 3789999999999999999999999999999999999999999999999
Q ss_pred HHhhccccCcchhhHHHHHHHhhccCcccccccccchhHHHHHHHHHHHHHHHHHhhCCChHHHHHHHhccccCCCcccc
Q 001045 871 TLVRNLRIGAMMRTILPALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMNKGIGFSASTL 950 (1176)
Q Consensus 871 iIlk~LRiG~~~~tvl~aLa~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~ay~~~pdl~~v~~~L~~~g~~~~~~~~ 950 (1176)
+|+++||||+++++|+.|||+||..+ ++.++++|+.+|||+.||+.|.++|++. +..+
T Consensus 157 li~~~lriG~~~~~vl~ala~a~~~~---------------------~~~v~~~~~~~~~l~~v~~~l~~~g~~~-l~~~ 214 (561)
T 2cfm_A 157 TILGTMRTGVAEGLLRDAIAMAFHVK---------------------VELVERAYMLTSDFGYVAKIAKLEGNEG-LAKV 214 (561)
T ss_dssp HHHTCCCCCCCHHHHHHHHHHHTTCC---------------------HHHHHHHHHHHCCHHHHHHHHHHHHHHH-HHHC
T ss_pred HHhccccccccHHHHHHHHHHHhcCC---------------------HHHHHHHHccCCCHHHHHHHHHhccccc-cccc
Confidence 99999999999999999999999764 3789999999999999999999877642 3478
Q ss_pred CcCCCCCccCCCCcccCChhHHHHhccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCCCCchhHHHHHHhhcCCC
Q 001045 951 SMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPA 1030 (1176)
Q Consensus 951 ~l~~g~Pi~PMLA~~~~~~~~~~~~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~~ypdl~~~l~~~~~~~ 1030 (1176)
.++||+|++||||+++++++++++++++ +|++|+||||+|||+|+. +|.|++|||+|+++|.+||++.+.+.+.+ .
T Consensus 215 ~~~~~~P~~PmLA~~~~~~~~~~~~~~~-~~~~E~K~DG~R~~i~~~-~g~v~l~SR~g~~~t~~fPel~~~~~~~l--~ 290 (561)
T 2cfm_A 215 QVQLGKPIKPMLAQQAASIRDALLEMGG-EAEFEIKYDGARVQVHKD-GSKIIVYSRRLENVTRAIPEIVEALKEAI--I 290 (561)
T ss_dssp CCCTTSCCCCCEEEEESCHHHHHHHTTS-CEEEEEECCSEEEEEEEE-TTEEEEECTTCCBCGGGCHHHHHHHHHHB--C
T ss_pred CCCCCCCCCCeeCCcCCChhHHHhhcCC-cEEEEEeEceEEEEEEEE-CCEEEEEeCCCCCchhhhhhHHHHHHHhC--C
Confidence 9999999999999999999998888854 799999999999999995 88999999999999999999999888654 2
Q ss_pred CCCeEEEEEEEEEecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhc
Q 001045 1031 AGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFY 1110 (1176)
Q Consensus 1031 ~~~~ILDGElVa~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~ 1110 (1176)
..++|||||||+|| ++| +++||+.|++|.++... +.......+++|++|||||+||++|+++||.+||++|++++
T Consensus 291 ~~~~iLDGElv~~d-~~g-~~~~F~~L~~r~~~~~~--~~~~~~~~~~~~~vFDlL~l~g~~l~~~pl~eRr~~L~~~~- 365 (561)
T 2cfm_A 291 PEKAIVEGELVAIG-ENG-RPLPFQYVLRRFRRKHN--IEEMMEKIPLELNLFDVLYVDGQSLIDTKFIDRRRTLEEII- 365 (561)
T ss_dssp SSEEEEEEEEEEBC-TTS-SBCCTHHHHHHHHCCSC--HHHHHHHSCEEEEEEEEEEETTEECTTSCHHHHHHHHHHHB-
T ss_pred CcceEeeeEEEEEc-CCC-cccCHHHHHHHhhcccc--hhhhcccCceEEEEEEEEeECCcCcccCCHHHHHHHHHHHh-
Confidence 57999999999999 554 78999999999764332 22333467899999999999999999999999999999999
Q ss_pred ccCCCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhCCCceEEEecCCCCCCcccCCCCCCC
Q 001045 1111 DEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176 (1176)
Q Consensus 1111 ~~~~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~g~EGlmvK~ld~~s~Y~pGkRs~~W 1176 (1176)
.+ .+++.++++..+ .+.++++++|+++++.|+||||+|+++ |+|+||+|+.+|
T Consensus 366 ~~-~~~i~~~~~~~~----------~~~~~~~~~~~~~~~~g~EGlv~K~~d--s~Y~~G~Rs~~W 418 (561)
T 2cfm_A 366 KQ-NEKIKVAENLIT----------KKVEEAEAFYKRALEMGHEGLMAKRLD--AVYEPGNRGKKW 418 (561)
T ss_dssp CC-CSSEEECCEEEE----------SCHHHHHHHHHHHHHTTCCEEEEECTT--CCCCTTCEEEEE
T ss_pred Cc-CCcEEEeeeEEc----------CCHHHHHHHHHHHHHcCCceeEEeCCC--CCCCCCCcCCCe
Confidence 43 378999988765 578999999999999999999999998 999999999888
No 5
>3l2p_A DNA ligase 3; DNA ligase, DNA repair, ATP-binding, cell cycle, cell divisi damage; HET: DNA AMP; 3.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-69 Score=657.65 Aligned_cols=401 Identities=21% Similarity=0.374 Sum_probs=342.0
Q ss_pred CCcchHHHHHHHHHHHhhhchHHHHHHHHHHHHhhhcCCCCChhhHHHHhcccCCCCCcccccccchhhHHHHHHHHhCC
Q 001045 711 QPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEACGT 790 (1176)
Q Consensus 711 ~~~~F~~l~~~~~~i~~t~~r~~k~~~L~~~~r~~~~~~p~dl~~~v~l~~~~l~P~~~~~elgige~~L~kal~~~~g~ 790 (1176)
.+|+|.+||++|+.|++|++|++|+++|++||+.+ .+++++...+|+++++|+|+|++++|||++++|.|+|++++|+
T Consensus 5 ~d~~F~~f~~l~~~ie~~s~r~~k~~il~~~~~~~--~~~~~~~~~~y~~~~~l~P~~~~~~~gi~ek~l~k~~~~~~g~ 82 (579)
T 3l2p_A 5 KDCLLREFRKLCAMVADNPSYNTKTQIIQDFLRKG--SAGDGFHGDVYLTVKLLLPGVIKTVYNLNDKQIVKLFSRIFNC 82 (579)
T ss_dssp GGGBHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCC---------CCHHHHHHHHCTTTSCCCCSCCHHHHHHHHHHHHTS
T ss_pred ccCcHHHHHHHHHHHHhccChHHHHHHHHHHHHhc--CCcccccchHHHHHHHhCCCccCcccCCcHHHHHHHHHHHHCc
Confidence 46999999999999999999999999999999986 2456788889999999999999999999999999999999999
Q ss_pred ChHHHHHHHHhcCChHHHHHHHHhh--ccccCCCCCCcHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHhhcchhhHHHH
Q 001045 791 NRSKIRDMYNRLGDLGDVAQECRQT--QALLAPPPPLLIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFL 868 (1176)
Q Consensus 791 ~~~~i~~~~~~~GDlG~va~~~~~~--q~~l~~~~~LTi~eV~~~L~~IA~~~g~~s~~~K~~il~~Ll~~~~~~E~k~L 868 (1176)
+.+.+.+.| +.||+|.+|+.+... +.....+++|||.+||+.|++||+.+|++|+. .+|..|+.+|++.|+|||
T Consensus 83 ~~~~~~~~~-~~GD~~~~~~~~~~~~~~~~~~~~~~LTv~~V~~~L~~ia~~~g~~sq~---~~l~~l~~~~~~~E~k~l 158 (579)
T 3l2p_A 83 NPDDMARDL-EQGDVSETIRVFFEQSKSFPPAAKSLLTIQEVDEFLLRLSKLTKEDEQQ---QALQDIASRCTANDLKCI 158 (579)
T ss_dssp CHHHHHHHG-GGSCHHHHHHHHHHSCSSSCCCSSCCCBHHHHHHHHHHHHTCCSHHHHH---HHHHHHHTTCCSHHHHHH
T ss_pred CHHHHHHHH-HcCCHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHhccCcHHHH---HHHHHHHHhCCHHHHHHH
Confidence 999999888 679999999887543 22233467999999999999999998876653 589999999999999999
Q ss_pred HHHHhhccccCcchhhHHHHHHHhhccCcccccccccchhHHHHHHHHHHHHHHHHHhhCCChHHHHHHHhccc------
Q 001045 869 VRTLVRNLRIGAMMRTILPALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMNKG------ 942 (1176)
Q Consensus 869 vRiIlk~LRiG~~~~tvl~aLa~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~ay~~~pdl~~v~~~L~~~g------ 942 (1176)
+|+|+++||||+++++|+.||| +++.++|+.++||+.||+.++..+
T Consensus 159 ~R~i~~~lriG~~e~~vl~a~~----------------------------~~a~~~~~~~~~l~~v~~~~~~~~~~~~~~ 210 (579)
T 3l2p_A 159 IRLIKHDLKMNSGAKHVLDALD----------------------------PNAYEAFKASRNLQDVVERVLHNAQEVEKE 210 (579)
T ss_dssp HHHHTTCCSSSCCHHHHHHTTC----------------------------TTHHHHHHHSCCHHHHHHHHHHHHHSCC--
T ss_pred HHHHHhhhhcccchhHHHHHhC----------------------------HHHHHHHhhcCCHHHHHHHHHhhchhhhcc
Confidence 9999999999999999999864 456799999999999998886532
Q ss_pred --cCCCccccCcCCCCCccCCCCcccCChhHHHHhccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCCCCchhHH
Q 001045 943 --IGFSASTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLI 1020 (1176)
Q Consensus 943 --~~~~~~~~~l~~g~Pi~PMLA~~~~~~~~~~~~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~~ypdl~ 1020 (1176)
... ...+.+.+|+||+||||+++++++++++++. ..|++|+||||+|||+|+ .+++|++|||||+++ ||++.
T Consensus 211 ~~~~~-~~~~~~~~~~pv~PMLA~~~~~~~~~~~~~~-~~~~~E~K~DG~R~qih~-~g~~v~l~SR~g~~~---~p~~~ 284 (579)
T 3l2p_A 211 PGQRR-ALSVQASLMTPVQPMLAEACKSVEYAMKKCP-NGMFSEIKYDGERVQVHK-NGDHFSYFSRSLKPV---LPHKV 284 (579)
T ss_dssp -------CCCCCCTTSCCCCCEEEECCCHHHHHHHCT-TCEEEEECCCSEEEEEEE-ETTEEEEECTTSCBC---CGGGT
T ss_pred ccccc-ccccccCCCCCCCCccCCcCCCHHHHHhhCC-CCeEEEEccCcEEEEEEE-ECCEEEEECCCCCcc---ChhHH
Confidence 221 2346788999999999999999999998885 468999999999999999 488999999999998 45543
Q ss_pred ----HHHHhhcCCCCCCeEEEEEEEEEecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccC
Q 001045 1021 ----SIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGY 1096 (1176)
Q Consensus 1021 ----~~l~~~~~~~~~~~ILDGElVa~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~ 1096 (1176)
+.+...+ +...+||||||||+||+++| +++|||.|+.|.++. ....++||++|||||+||++|+++
T Consensus 285 ~~l~~~l~~~~-~~~~~~iLDGElv~~d~~~g-~~~~F~~L~~~~~~~--------~~~~~v~~~vFDlL~l~G~~L~~~ 354 (579)
T 3l2p_A 285 AHFKDYIPQAF-PGGHSMILDSEVLLIDNKTG-KPLPFGTLGVHKKAA--------FQDANVCLFVFDCIYFNDVSLMDR 354 (579)
T ss_dssp TTGGGTHHHHS-TTCSEEEEEEEEEEBCTTTC-CBCCGGGGSHHHHHH--------CSSCCEEEEEEEEEEETTEECTTS
T ss_pred HHHHHHHHHhc-CcCCceEEEeEEEEEeCCCC-cccCHHHHHHHhhhh--------cccCCeEEEEEEeeccCCCccccC
Confidence 4444443 34678999999999998765 789999998774421 123589999999999999999999
Q ss_pred CHHHHHHHHHHhhcccCCCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhCCCceEEEecCCCCCCcccCCCCCCC
Q 001045 1097 TLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176 (1176)
Q Consensus 1097 Pl~eRr~lL~~~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~g~EGlmvK~ld~~s~Y~pGkRs~~W 1176 (1176)
||.+||++|++++ .+.++++.++++..+ .+.++++++|+++++.|+||||+|+++ |+|+||+| +|
T Consensus 355 Pl~eRr~~L~~~~-~~~~~~i~~~~~~~~----------~~~~~~~~~~~~a~~~g~EGlv~K~~d--s~Y~~Grr--~W 419 (579)
T 3l2p_A 355 PLCERRKFLHDNM-VEIPNRIMFSEMKRV----------TKALDLADMITRVIQEGLEGLVLKDVK--GTYEPGKR--HW 419 (579)
T ss_dssp CHHHHHHHHHHHC-CCBTTTEEECCEEEE----------CSHHHHHHHHHHHHHTTCCCEEEEESS--CCCCTTCE--EE
T ss_pred CHHHHHHHHHHHh-hcCCCeEEEeeeEEc----------CCHHHHHHHHHHHHHhCCCceEEecCc--CCCCCCCe--ee
Confidence 9999999999999 566789999987765 367899999999999999999999998 99999988 56
No 6
>4b87_A DNA cross-LINK repair 1A protein; dclre1A, DCLRE, interstrand crosslink repair, hydrolase, NIT mustard, cancer, chemotherapy, PSO2 homolog,; HET: DNA; 2.16A {Homo sapiens}
Probab=100.00 E-value=1.2e-46 Score=436.92 Aligned_cols=337 Identities=36% Similarity=0.644 Sum_probs=275.1
Q ss_pred CCCCCCCCCCCCCCCCCeeEeCCccEEEecCCcCC-CCccEEEeccCChhhhCCcccCCCCceEEeCHHHHHHHHHhhcc
Q 001045 24 SPPDSLIFPPIPRTFPPSKHVPNTRFLIDAFRYAA-DFSVSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLLSQILNI 102 (1176)
Q Consensus 24 ~l~s~~~~p~~~r~~p~~~~ipg~~~liD~~~~~~-~~i~avfITHaH~DHiggL~~l~~~~pIY~s~~T~~ll~~~l~~ 102 (1176)
+.+|++.+|.+.+.+|.++.+||..++||+|++.. ++|++|||||+|.||++||+.. .++||||++.|.+++...++.
T Consensus 14 ~~~~~~~~~~~~~~~p~~~~~pG~~ilVD~f~~~~~~~IdaI~lTH~H~DHiggl~~~-~~~pIy~s~~t~~ll~~~l~~ 92 (367)
T 4b87_A 14 IPESSNVGGSRKKTCPFYKKIPGTGFTVDAFQYGVVEGCTAYFLTHFHSDHYAGLSKH-FTFPVYCSEITGNLLKNKLHV 92 (367)
T ss_dssp ---------CCCCCCCGGGBCTTSSEEESCCSSSSCTTCCEEECCCCCHHHHTTCSTT-CCSCEEECHHHHHHHHHHSCC
T ss_pred ccccccCCCCCCCCCceEEEECCCeEEEeCCCcCCccCCcEEEECcChHHHhCCcccc-cCCcEEECHHHHHHHHHHhcc
Confidence 34566788888999999999999999999998754 7899999999999999999964 478999999999999988877
Q ss_pred CCCceEEeCCCceEEECCEEEEEEecCCCcCceEEEEEEcCCCCcccEEEEECCCCCcccccchhhhhccCCCcEEEEeC
Q 001045 103 NPKFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFCKTMLLQPVMNEFAGCDAVFLDT 182 (1176)
Q Consensus 103 ~~~~i~~l~~~~~~~i~~~~Vt~~~a~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~~~~~~~~~l~~~~~vDvLI~Es 182 (1176)
....+++++.++++.+++++|++++++|+||+++|+|+.++ | .+|+||||+++.+.... +.+. ..++|+||+||
T Consensus 93 ~~~~~~~l~~g~~~~ig~~~v~~~~agH~~gs~~~~i~~~~--g--~~il~tGD~~~~~~~~~-~~l~-~~~~D~Li~Es 166 (367)
T 4b87_A 93 QEQYIHPLPLDTECIVNGVKVVLLDANHCPGAVMILFYLPN--G--TVILHTGDFRADPSMER-SLLA-DQKVHMLYLDT 166 (367)
T ss_dssp CGGGEEECCBTSCEEETTEEEEEEECSSSTTCEEEEEECTT--S--CEEEECCSCCCCGGGGG-SGGG-TSCCCEEEECC
T ss_pred ccceEEEeCCCCEEEECCEEEEEEeCCCcCCcEEEEEEcCC--C--cEEEEecCcccCcccch-hhhc-cCCCCEEEEec
Confidence 66678899999999999999999999999999999999754 3 57999999999887543 2221 15899999999
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHhhhccccCCCeEEEEEeccccchHHHHHHHHHHcCCcEEEccchHHHHHHhCCC
Q 001045 183 TYCNPKFLFPLQEESVEYVVNVVNRVGGELNEGLQKRVLFLVATYVIGKEKILIEIFKKCGRKVCVDSRKMEVLRVLGYG 262 (1176)
Q Consensus 183 Ty~~~~~~~p~~~e~~~~l~~~i~~~~~~~~~~~~g~vlvli~~~slGR~q~ll~ia~~~g~~I~vdg~~~~il~~lg~~ 262 (1176)
||+++.+.+|+++++.+.+++.+.+.+.. +++++|++++|++||+|+++.+++++|++|++++++++++++++.+
T Consensus 167 Ty~~~~~~~ps~~~~~~~~~~~i~~~~~~-----~g~~~v~~~a~~igr~q~ll~ia~~~g~ki~v~~~~~~il~~l~~~ 241 (367)
T 4b87_A 167 TYCSPEYTFPSQQEVIRFAINTAFEAVTL-----NPHALVVCGTYSIGKEKVFLAIADVLGSKVGMSQEKYKTLQCLNIP 241 (367)
T ss_dssp TTCSTTCCCCCHHHHHHHHHHHHHHHHHH-----CTTEEEEEEESSSCCHHHHHHHHHHTTCCEECCHHHHHHHHTTCCT
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHHHHh-----CCCeEEEEccchhHHHHHHHHHHHHhCCEEEEeHHHHHHHHhcCCc
Confidence 99999888999999988888877766554 5788889999999999999999999999999999999999998876
Q ss_pred C-CCccccCCCCCeEEEecChH--------HHH--hcCCCceEEEEeccceeecccC---ceeeeccCCeeEEEEeecCC
Q 001045 263 D-SGVFTEDESETDVHVVGWNE--------IMV--ERGYDKVVGFVPTGWTYEVKRN---KFAVRSKDAFEIHLVPYSEH 328 (1176)
Q Consensus 263 ~-~~~~t~d~~~~~I~v~~~~~--------~~~--~~g~~~~v~i~ptGw~~~~~~~---~~~v~~~~~~~v~~i~~SgH 328 (1176)
+ ..++|.++.+++||+++... .+. ..+++++++|.||||.+..+.. .+....+.++.++.+|||+|
T Consensus 242 ~~~~~~t~d~~~~~vh~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~ptgw~~~~~~~~~~~~~~~~~~~~~~~~vpySeH 321 (367)
T 4b87_A 242 EINSLITTDMCSSLVHLLPMMQINFKGLQSHLKKCGGKYNQILAFRPTGWTHSNKFTRIADVIPQTKGNISIYGIPYSEH 321 (367)
T ss_dssp THHHHEESCGGGCSEEEEEGGGCSHHHHHHHHHSGGGCCCEEEEEEECC----------CCCCCEEETTEEEEEECCCSS
T ss_pred hhhhhcccCCccceEEEeecCcCCHHHHHHHHHHhhcccccEEEEcCcccccCCCCCcccccccccCCceEEEEEeccCC
Confidence 3 35689999899999998762 111 2467889999999998865422 23334456788999999999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEecCCCCcCchHHHHHHHHHHHHHHHHh
Q 001045 329 SNYDELREYVKFLKPKRVIPTVGMDIEKLDSKHANKMRKYFAGLVDEM 376 (1176)
Q Consensus 329 As~~EL~~~V~~lrPk~VIPvHG~~~e~~~~~E~~~m~k~f~~l~~~~ 376 (1176)
||+.||.+||+.++|++|||+|+.+.. +...+|.+||+.|..|+
T Consensus 322 ss~~EL~~fv~~l~p~~iiptv~~~~~----~~~~~m~~~~~~w~~~~ 365 (367)
T 4b87_A 322 SSYLEMKRFVQWLKPQKIIPTVNVGTW----KSRSTMEKYFREWKLEA 365 (367)
T ss_dssp CCHHHHHHHHHHHCCSEEEECSSCSSH----HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCeEECeecCCCH----HHHHHHHHHHHHHHhhc
Confidence 999999999999999999999997653 24579999999999885
No 7
>3zdk_A 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A {Homo sapiens}
Probab=100.00 E-value=1.1e-42 Score=398.90 Aligned_cols=315 Identities=30% Similarity=0.548 Sum_probs=247.0
Q ss_pred CeeEeCCccEEEecCCcC-CCCccEEEeccCChhhhCCcccCCCCceEEeCHHHHHHHHHhhccCCCceEEeCCCceEEE
Q 001045 40 PSKHVPNTRFLIDAFRYA-ADFSVSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLLSQILNINPKFIYPLPIKIPVLI 118 (1176)
Q Consensus 40 ~~~~ipg~~~liD~~~~~-~~~i~avfITHaH~DHiggL~~l~~~~pIY~s~~T~~ll~~~l~~~~~~i~~l~~~~~~~i 118 (1176)
+..++||+.|.||.|++. .+++++|||||+|.||+|||+.++ ++||||++.|+.+++..++.....++++++++++.+
T Consensus 3 ~g~~i~g~~i~vD~f~~~~~~~i~ai~lTH~H~DHiggl~~l~-~~pVy~s~~t~~ll~~~l~~~~~~~~~~~~~~~~~i 81 (336)
T 3zdk_A 3 NGVLIPHTPIAVDFWSLRRAGTARLFFLSHMHSDHTVGLSSTW-ARPLYCSPITAHLLHRHLQVSKQWIQALEVGESHVL 81 (336)
T ss_dssp CCEECTTSSEEESCCCHHHHCSSCEEECCCCCGGGSTTCSTTC-CSCEEECHHHHHHHHHHHCCCTTTEEECCTTSEEEE
T ss_pred CCeEeCCCCEeecCCcccCCCCCCEEEECCChHHHHCchHHHc-CCCEEecHHHHHHHHHhhhhcccceEecCCCCeEEe
Confidence 456799999999999864 378999999999999999999987 799999999999999988876666889999998876
Q ss_pred -------CCEEEEEEecCCCcCceEEEEEEcCCCCcccEEEEECCCCCcccccchhhhhccCCCcEEEEeCCCCCCCCCC
Q 001045 119 -------DGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLF 191 (1176)
Q Consensus 119 -------~~~~Vt~~~a~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~~~~~~~~~l~~~~~vDvLI~EsTy~~~~~~~ 191 (1176)
++++|++++++|+||+++|+|+.++ ++|+|||||++++.....+.+....++|+||+||||+++.+.+
T Consensus 82 ~~~~~~~g~~~v~~~~~~H~~gs~~~~i~~~~-----~~i~~tGD~~~~~~~~~~~~l~~~~~vD~Li~DsT~~~~~~~~ 156 (336)
T 3zdk_A 82 PLDEIGQETMTVTLLDANHCPGSVMFLFEGYF-----GTILYTGDFRYTPSMLKEPALTLGKQIHTLYLDNTNCNPALVL 156 (336)
T ss_dssp ESSSSSSCEEEEEEEECSSSTTCEEEEEEETT-----EEEEECCSCCCCGGGGGCGGGSSCCCCSEEEECCTBCCTTCCC
T ss_pred cCcccccCCEEEEEEECCCCcceEEEEEEeCC-----ceEEEeCCCCCCcccccchhhhccCCccEEEEecCCCCCCCCC
Confidence 8899999999999999999999864 6999999999988766555443457999999999999998889
Q ss_pred CChHHHHHHHHHHHHHHhhhccccCCCeEEEEEeccccchHHHHHHHHHHcCCcEEEccchHHHHHHhCCCCCCccccCC
Q 001045 192 PLQEESVEYVVNVVNRVGGELNEGLQKRVLFLVATYVIGKEKILIEIFKKCGRKVCVDSRKMEVLRVLGYGDSGVFTEDE 271 (1176)
Q Consensus 192 p~~~e~~~~l~~~i~~~~~~~~~~~~g~vlvli~~~slGR~q~ll~ia~~~g~~I~vdg~~~~il~~lg~~~~~~~t~d~ 271 (1176)
|+++++.+.+.++++++ .+++ |++++|++||+|+++++|+++|++|+++|+.+..++.+|++ ++|+.++
T Consensus 157 pse~~v~~~l~~~i~~~-------~~g~--vii~~f~vgR~q~i~~~a~~~grkV~v~gr~~~~~~~lg~~--~~~~~~~ 225 (336)
T 3zdk_A 157 PSRQEAAHQIVQLIRKH-------PQHN--IKIGLYSLGKESLLEQLALEFQTWVVLSPRRLELVQLLGLA--DVFTVEE 225 (336)
T ss_dssp CCHHHHHHHHHHHHHTC-------TTSE--EEEEECSSSCHHHHHHHHHHHTCCEECCHHHHHHHHHTTCC--SCEESCG
T ss_pred CCHHHHHHHHHHHHHhC-------CCCc--EEEeecchHHHHHHHHHHHHcCCEEEEEhHHHHHHHhcCCc--cccCCHh
Confidence 99999988888887754 2456 68899999999999999999999999999999999999986 4677777
Q ss_pred CCCeEEEecChH----HHHh-cCCCceEEEEeccceeecccCceeeeccCCeeEEEEeecCCCCHHHHHHHHHHcCCCEE
Q 001045 272 SETDVHVVGWNE----IMVE-RGYDKVVGFVPTGWTYEVKRNKFAVRSKDAFEIHLVPYSEHSNYDELREYVKFLKPKRV 346 (1176)
Q Consensus 272 ~~~~I~v~~~~~----~~~~-~g~~~~v~i~ptGw~~~~~~~~~~v~~~~~~~v~~i~~SgHAs~~EL~~~V~~lrPk~V 346 (1176)
....+++..... .+.. .+..+.+.+.||||...... ..++.+||||||+++||+.|++.++|+++
T Consensus 226 ~~~~i~~~~~~~i~~~al~r~~~~~~~i~i~~S~~~ipg~~----------~~~~~vh~S~Ha~~~EL~~~~~~~~P~~~ 295 (336)
T 3zdk_A 226 KAGRIHAVDHMEICHSNMLRWNQTHPTIAILPTSRKIHSSH----------PDIHVIPYSDHSSYSELRAFVAALKPCQV 295 (336)
T ss_dssp GGCSEEEEEGGGCSHHHHHHHHHHSCEEEEEECSSCCCCSS----------TTEEEECCCSSCBHHHHHHHHHHHCCSCE
T ss_pred HcCCCCcchhheeHHHHHHhhhCcCCeEEEEeccccccCCc----------cCceeeEecCCCCHHHHHHHHHHhCCCEE
Confidence 778888876431 1111 13457899999998754321 12578999999999999999999999999
Q ss_pred EEEe-cCCCCcCchHHHHHHHHHHHHHHHH---hhhhHHhhhhccccCccc
Q 001045 347 IPTV-GMDIEKLDSKHANKMRKYFAGLVDE---MASKKEFLMGFHRGTSEI 393 (1176)
Q Consensus 347 IPvH-G~~~e~~~~~E~~~m~k~f~~l~~~---~~~k~~fl~~~~~~~~~~ 393 (1176)
|||| |..- .+|+.++.- ..--..+++-|+.++++.
T Consensus 296 iPvh~ge~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (336)
T 3zdk_A 296 VPIVSRRPC------------GGFQDSLSPRISVPLIPDSVQQYMSSSSRK 334 (336)
T ss_dssp EESCTTSCC------------CSCGGGCCCC--------------------
T ss_pred EEEECCcCc------------hHhHhhcCcccccccCchHHHHHHhccccC
Confidence 9999 8321 235555541 111134566666666653
No 8
>1vs0_A Putative DNA ligase-like protein RV0938/MT0965; OB fold, nucleotidyl transferase, structural genomic protein structure initiative; HET: APK MSE; 2.40A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.4e-35 Score=336.77 Aligned_cols=182 Identities=27% Similarity=0.498 Sum_probs=154.2
Q ss_pred cCCCCCccCCCCcccCChhHHHHhccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCCCCchhHHHHHHhhcCCCC
Q 001045 952 MVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAA 1031 (1176)
Q Consensus 952 l~~g~Pi~PMLA~~~~~~~~~~~~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~~ypdl~~~l~~~~~~~~ 1031 (1176)
.+||.|++||||++++ ++. +.+.+|++|+||||+|||+|+ .+|+|++|||||+++|.+||+|..++..+ ..
T Consensus 3 ~~~~~p~~PmLA~~~~-~~~----~~~~~~~~E~K~DG~R~~~~~-~~g~v~l~SR~g~~~t~~fPel~~~~~~l---~~ 73 (310)
T 1vs0_A 3 VFEFDNLAPMLATHGT-VAG----LKASQWAFEGXWDGYRLLVEA-DHGAVRLRSRSGRDVTAEYPQLRALAEDL---AD 73 (310)
T ss_dssp -CCGGGCCCCEEEECC-CTT----CCTTTEEEEEECCSEEEEEEE-ETTEEEEEETTCCBCGGGCGGGHHHHHHT---TT
T ss_pred CCCCCCccCeECCCcC-CCc----cCCCCEEEEEccCcEEEEEEE-ECCEEEEEcCCCCCchhhchhHHHHHHhC---CC
Confidence 4688999999999985 322 246789999999999999999 58999999999999999999999877653 34
Q ss_pred CCeEEEEEEEEEecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhcc
Q 001045 1032 GTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYD 1111 (1176)
Q Consensus 1032 ~~~ILDGElVa~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~ 1111 (1176)
.++|||||||+||.. | + .+|+.|++|.+.. +++|++||||++||++|+++||.+||++|++++ .
T Consensus 74 ~~~iLDGElv~~d~~-g-~-~~F~~l~~r~~~~------------~~~~~vFDll~~~g~~l~~~pl~eRr~~L~~~~-~ 137 (310)
T 1vs0_A 74 HHVVLDGEAVVLDSS-G-V-PSFSQMQNRGRDT------------RVEFWAFDLLYLDGRALLGTRYQDRRKLLETLA-N 137 (310)
T ss_dssp CEEEEEEEEECBCTT-S-C-BCHHHHHTCCTTS------------CCEEEEEEEEEETTEECTTSCHHHHHHHHHHHH-H
T ss_pred ccEEEeeEEEEECCC-C-C-cCHHHHHhhccCC------------cEEEEEEEeEEECCcCcccCCHHHHHHHHHHhc-c
Confidence 689999999999873 3 3 5999999997642 389999999999999999999999999999999 3
Q ss_pred cCCCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhCCCceEEEecCCCCCCcccCCCCCCC
Q 001045 1112 EKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176 (1176)
Q Consensus 1112 ~~~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~g~EGlmvK~ld~~s~Y~pGkRs~~W 1176 (1176)
+ +++.++++.. .+++++|++++++|+||||+|+++ |+|+||+|+.+|
T Consensus 138 ~--~~i~~~~~~~--------------~~~~~~~~~~~~~g~EGlv~K~~d--s~Y~~G~Rs~~W 184 (310)
T 1vs0_A 138 A--TSLTVPELLP--------------GDGAQAFACSRKHGWEGVIAKRRD--SRYQPGRRCASW 184 (310)
T ss_dssp H--SCCCCCCCCC--------------SSHHHHHHHHHHTTCCEEEEEETT--CCCCTTCEEEEE
T ss_pred C--CcEEECccCc--------------hHHHHHHHHHHHcCCceEEEeCCC--CCcCCCCcChHH
Confidence 3 2455544321 248899999999999999999998 999999999888
No 9
>4htp_A DNA ligase 4; helical domain, DNA binding domain, DNA, ligase-HYD complex; HET: DNA; 2.25A {Homo sapiens} PDB: 4hto_A*
Probab=100.00 E-value=8.1e-35 Score=317.97 Aligned_cols=200 Identities=19% Similarity=0.296 Sum_probs=174.9
Q ss_pred CCcchHHHHHHHHHHHhhhchHHHHHHHHHHHHhhhc------CCCCChhhHHHHhcccCCCCCcc--cccccchhhHHH
Q 001045 711 QPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLA------LSPDDVLPAVYLCTNKIASNHEN--IELNIGGSLVTS 782 (1176)
Q Consensus 711 ~~~~F~~l~~~~~~i~~t~~r~~k~~~L~~~~r~~~~------~~p~dl~~~v~l~~~~l~P~~~~--~elgige~~L~k 782 (1176)
.+|||.+||++|++|++|++|++|+++|++||+.+.. .+|+++...+|+++++++|+|++ ++||||+++|+|
T Consensus 12 ~~~~F~~l~~~~e~Ie~ts~rl~k~~il~~f~~~~~~~~~~l~~~~~~~~~dly~~l~ll~P~~d~~r~~ygi~e~~L~K 91 (240)
T 4htp_A 12 SHVPFADLCSTLERIQKSKGRAEKIRHFREFLDSWRKFHDALHKNHKDVTDSFYPAMRLILPQLERERMAYGIKETMLAK 91 (240)
T ss_dssp GTSBHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHTTTCSSCCCCSHHHHHHHSGGGCCSSCCCCCCHHHHHH
T ss_pred cCCcHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccccccCcccCcchHHHHHHHhCccccccccccCCCHHHHHH
Confidence 5899999999999999999999999999999999753 45555555667777778999984 599999999999
Q ss_pred HHHHHhCCChHHHH-----------HHHHhcCChHHHHHHHHhhccccCCCCCCcHHHHHHHHHHhhhhcCCCchHHHHH
Q 001045 783 AIEEACGTNRSKIR-----------DMYNRLGDLGDVAQECRQTQALLAPPPPLLIKDVYSMLCKISVQTGSGSTARKKS 851 (1176)
Q Consensus 783 al~~~~g~~~~~i~-----------~~~~~~GDlG~va~~~~~~q~~l~~~~~LTi~eV~~~L~~IA~~~g~~s~~~K~~ 851 (1176)
+|++++|++.+.++ ..|++.||+|+||+.+.+++.. .+++|||.+||+.|++||..+|++++.+|..
T Consensus 92 ai~~~~g~~~~~~~~~~L~~wk~~~~~~~~~GDlg~va~~~~~~r~~--~~~~LTv~~V~~~L~~IA~~~g~~s~~~k~~ 169 (240)
T 4htp_A 92 LYIELLNLPRDGKDALKLLNYRTPTGTHGDAGDFAMIAYFVLKPRCL--QKGSLTIQQVNDLLDSIASNNSAKRKDLIKK 169 (240)
T ss_dssp HHHHHTTCCTTSHHHHHHHTC----------CCHHHHHHHHHTTSSC--CSCCCBHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHCCCcchHHHHHHHhccccccccccCCCHHHHHHHHHHccCC--CCCCcCHHHHHHHHHHHHHhhCcccHHHHHH
Confidence 99999999998876 5677889999999999865433 2478999999999999999999999999999
Q ss_pred HHHHHHhhcchhhHHHHHHHHhhccccCcchhhHHHHHHHhhccCcccccccccchhHHHHHHHHHHHHHHHHHhhCCCh
Q 001045 852 LIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSL 931 (1176)
Q Consensus 852 il~~Ll~~~~~~E~k~LvRiIlk~LRiG~~~~tvl~aLa~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~ay~~~pdl 931 (1176)
+|..||.+|++.|+|||+|+|+|+||||+++++|+.+| |++++++|+.++||
T Consensus 170 ~l~~Ll~~~t~~E~k~liRiil~~lriG~~e~~vl~a~----------------------------h~~~~~a~~~~~dL 221 (240)
T 4htp_A 170 SLLQLITQSSALEQKWLIRMIIKDLKLGVSQQTIFSVF----------------------------HNDAAELHNVTTDL 221 (240)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHTCCCCSSCHHHHHHHH----------------------------CTTHHHHHHHHCCH
T ss_pred HHHHHHHHCCHHHHHHHHHHHhcccccCccHhHHHHHh----------------------------ChhHHHHHHhhCCH
Confidence 99999999999999999999999999999999999874 46789999999999
Q ss_pred HHHHHHHhc
Q 001045 932 DLLIPSLMN 940 (1176)
Q Consensus 932 ~~v~~~L~~ 940 (1176)
+.||+.|.+
T Consensus 222 ~~V~~~l~~ 230 (240)
T 4htp_A 222 EKVCRQLHD 230 (240)
T ss_dssp HHHHHHTCS
T ss_pred HHHHHHHhC
Confidence 999999873
No 10
>1a0i_A DNA ligase; DNA replication; HET: DNA ATP; 2.60A {Enterobacteria phage T7} SCOP: b.40.4.6 d.142.2.1
Probab=100.00 E-value=1.1e-34 Score=334.81 Aligned_cols=202 Identities=19% Similarity=0.182 Sum_probs=165.7
Q ss_pred ccCcCCCCCccCCCCcccCChhHHHHhccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCCC------CchhHHHH
Q 001045 949 TLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTS------RFPDLISI 1022 (1176)
Q Consensus 949 ~~~l~~g~Pi~PMLA~~~~~~~~~~~~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~------~ypdl~~~ 1022 (1176)
.|.++||+|++|||+ ++.++++.. ..|++|+||||+|||+|++.+|+|++|||+|++++. .||++++.
T Consensus 2 ~~~~~~~~pv~pmL~----~~~~~l~~~--~~~~~E~K~DG~R~~~~~~~~g~v~l~SR~g~~~~~l~~~~~~~p~~~~~ 75 (348)
T 1a0i_A 2 NIKTNPFKAVSFVES----AIKKALDNA--GYLIAEIKYDGVRGNICVDNTANSYWLSRVSKTIPALEHLNGFDVRWKRL 75 (348)
T ss_dssp TTCCCCEEEEECCHH----HHHHHHHHH--SSEEEEECCCSEEEEEEEETTSEEEEECTTSCBCGGGGGGCEECHHHHHH
T ss_pred eeeccCCCcCchhhh----cHHHHHhhc--CcEEEEEeeceeEEEEEEeCCCeEEEEcCCCCCCcchhhhhcccchHHHH
Confidence 477999999999993 355666543 479999999999999999547899999999999886 79999999
Q ss_pred HHhhcCCCCCCeEEEEEEEEEecCCCCcccChHHHhhhhcCC-------------------CCchhhhcccccceEEEEE
Q 001045 1023 INEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGG-------------------KDSVITIKSVKVDICVFVF 1083 (1176)
Q Consensus 1023 l~~~~~~~~~~~ILDGElVa~d~~~g~~~~pFq~L~~R~r~~-------------------~~~~i~~~~~~~~v~~~vF 1083 (1176)
+...+...+.+||||||||+|+ .||+.|++|.+.. ....+.......+++|++|
T Consensus 76 l~~~~~~~~~~~iLDGElv~~~-------~~F~~l~~~~~~k~~~~k~v~~~~~~~r~~~~~~~~i~~~~~~~~~~~~vF 148 (348)
T 1a0i_A 76 LNDDRCFYKDGFMLDGELMVKG-------VDFNTGSGLLRTKWTDTKNQEFHEELFVEPIRKKDKVPFKLHTGHLHIKLY 148 (348)
T ss_dssp HHSTTCCCTTEEEEEEEEEESS-------SCTTTHHHHHHCCSCCSSBSSCC--------CCCSCCCCCBCTTTEEEEEE
T ss_pred HhhhhccCCCCEEEEEEEEEeC-------CCHHHHHHHhcccccccccccccccccccccccccccccccccCcEEEEEE
Confidence 9875444567999999999973 4999999996521 1111221234678999999
Q ss_pred EeeeeC----Cccc---ccCCHHHHHHHHHHhhcccCCCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhCCCceE
Q 001045 1084 DIMFAN----GEQL---LGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGI 1156 (1176)
Q Consensus 1084 DiL~ln----G~~L---l~~Pl~eRr~lL~~~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~g~EGl 1156 (1176)
||||+| |++| +++||.+||++|++++.......+.+++++.+ ++.++++++|+++++.|+|||
T Consensus 149 Dll~l~~~~~G~~l~~~~~~pl~eRr~~L~~l~~~~~~~~i~~~~~~~~----------~~~~~~~~~~~~~~~~g~EGl 218 (348)
T 1a0i_A 149 AILPLHIVESGEDCDVMTLLMQEHVKNMLPLLQEYFPEIEWQAAESYEV----------YDMVELQQLYEQKRAEGHEGL 218 (348)
T ss_dssp EEEEHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHCTTSEEEECCEEEE----------SSHHHHHHHHHHHHTTTCCCE
T ss_pred eeEeeCCCCCCccchhhccCCHHHHHHHHHHHhhhCCCCeEEEeccEec----------CCHHHHHHHHHHHHHcCCceE
Confidence 999999 9999 89999999999999983222357888888775 468999999999999999999
Q ss_pred EEecCCCCCCcccCCCCCCC
Q 001045 1157 IVKSLDVDAGYSPSKRSDSW 1176 (1176)
Q Consensus 1157 mvK~ld~~s~Y~pGkRs~~W 1176 (1176)
|+|+++ |+|+||+|+. |
T Consensus 219 v~K~~d--s~Y~~Grr~~-w 235 (348)
T 1a0i_A 219 IVKDPM--CIYKRGKKSG-W 235 (348)
T ss_dssp EEECTT--CEECSEEEEE-E
T ss_pred EEeCCC--CCCCCCCccC-c
Confidence 999998 9999999886 6
No 11
>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis}
Probab=100.00 E-value=1.8e-32 Score=334.24 Aligned_cols=315 Identities=21% Similarity=0.253 Sum_probs=227.4
Q ss_pred CCCCCeeE-eCCccEEEecCCc---------------------CCCCccEEEeccCChhhhCCcccCCC--CceEEeCHH
Q 001045 36 RTFPPSKH-VPNTRFLIDAFRY---------------------AADFSVSYFLSHFHSDHYTGLSPSWS--KGIIFCSEI 91 (1176)
Q Consensus 36 r~~p~~~~-ipg~~~liD~~~~---------------------~~~~i~avfITHaH~DHiggL~~l~~--~~pIY~s~~ 91 (1176)
.+.+++.+ ..+..++|||+-. ...++++|||||+|.||+||+++++. ++||||++.
T Consensus 20 iG~n~~li~~~~~~iLID~G~~~~~~~~~g~d~iip~~~~l~~~~~~Id~I~lTH~H~DHiggl~~l~~~~~~pIy~t~~ 99 (555)
T 3zq4_A 20 IGKNTYAVQFQDEIVLIDAGIKFPEDELLGIDYVIPDYTYLVKNEDKIKGLFITHGHEDHIGGIPYLLRQVNIPVYGGKL 99 (555)
T ss_dssp SSCCEEEEEETTEEEEEEECCBCCCTTSTTCSEEEECCHHHHTTTTTEEEEEESCCCHHHHTTHHHHHTTCCCCEEECHH
T ss_pred cCCEEEEEEECCeEEEEeCCCCCCccccccccccccCHHHHhcCccCCCEEEECCCchhhhCCHHHHHHhcCceEEECHH
Confidence 35567777 7888999999831 12578999999999999999998764 789999999
Q ss_pred HHHHHHHhhc---c-CCCceEEeCCCceEEECCEEEEEEecCC-CcCceEEEEEEcCCCCcccEEEEECCCCCcccccch
Q 001045 92 TSRLLSQILN---I-NPKFIYPLPIKIPVLIDGCEVVLVGANH-CPGAVQFLFKVPGRNGGFERYVHTGDFRFCKTMLLQ 166 (1176)
Q Consensus 92 T~~ll~~~l~---~-~~~~i~~l~~~~~~~i~~~~Vt~~~a~H-~pGS~~flie~~~~~G~~~~IlYTGDfr~~~~~~~~ 166 (1176)
|..++...+. . ....++.+++++++.+++++|++++++| +|||++|+|++++ ++++||||++++......
T Consensus 100 t~~ll~~~l~~~~~~~~~~~~~v~~g~~~~ig~~~v~~~~~~H~~pgs~~~~i~~~~-----~~il~tGD~~~~~~~~~g 174 (555)
T 3zq4_A 100 AIGLLRNKLEEHGLLRQTKLNIIGEDDIVKFRKTAVSFFRTTHSIPDSYGIVVKTPP-----GNIVHTGDFKFDFTPVGE 174 (555)
T ss_dssp HHHHHHHHHHHHSTTTTCCEEECCTTCCEEETTEEEEEEEEBCSSSSEEEEEEEETT-----EEEEECCSCBCCSSCSSS
T ss_pred HHHHHHHHHHHcCccCCCceEEeCCCCEEEECCEEEEEEeCCCCCcCcEEEEEEECC-----cEEEEeCCCCCCCCcCcC
Confidence 9999987652 2 2345889999999999999999999999 9999999999975 699999999998765422
Q ss_pred ----hhhhcc--CCCcEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHHhhhccccCCCeEEEEEeccc--cchHHHHHHH
Q 001045 167 ----PVMNEF--AGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRVGGELNEGLQKRVLFLVATYV--IGKEKILIEI 238 (1176)
Q Consensus 167 ----~~l~~~--~~vDvLI~EsTy~~~~~~~p~~~e~~~~l~~~i~~~~~~~~~~~~g~vlvli~~~s--lGR~q~ll~i 238 (1176)
..+..+ .++|+||+||||+++....+++.+..+.+.+.+++. +++ +++++|+ +||.|+++.+
T Consensus 175 ~~d~~~l~~l~~~~~d~Li~esT~~~~~~~~~se~~v~~~i~~~~~~~--------~gr--vii~~fasnv~R~q~il~~ 244 (555)
T 3zq4_A 175 PANLTKMAEIGKEGVLCLLSDSTNSENPEFTMSERRVGESIHDIFRKV--------DGR--IIFATFASNIHRLQQVIEA 244 (555)
T ss_dssp CCCHHHHHHHHHTCEEEEEEECTTTTCCSCCCCHHHHHHHHHHHHHHC--------CSC--EEEECCTTCHHHHHHHHHH
T ss_pred ccCHHHHHHhcccCCcEEEecCcccCCCCCCCCHHHHHHHHHHHHHhC--------CCE--EEEEEChhHHHHHHHHHHH
Confidence 112211 589999999999998766777776666655555432 567 7899999 9999999999
Q ss_pred HHHcCCcEEEccchHH----HHHHhCCCC-CC--ccccCC-----CCC-eEEEecCh-HH---H--HhcCCCc------e
Q 001045 239 FKKCGRKVCVDSRKME----VLRVLGYGD-SG--VFTEDE-----SET-DVHVVGWN-EI---M--VERGYDK------V 293 (1176)
Q Consensus 239 a~~~g~~I~vdg~~~~----il~~lg~~~-~~--~~t~d~-----~~~-~I~v~~~~-~~---~--~~~g~~~------~ 293 (1176)
|+++|++|+++|+.+. +++.+|+.. +. +++.+. .+. .|.++|.+ +. + ...+..+ .
T Consensus 245 a~~~gr~v~v~grs~~~~~~~~~~~g~l~~p~~~~v~~~~~~~~~~~~~vii~tgsqGe~~~~L~r~a~~~~~~~~~~~~ 324 (555)
T 3zq4_A 245 AVQNGRKVAVFGRSMESAIEIGQTLGYINCPKNTFIEHNEINRMPANKVTILCTGSQGEPMAALSRIANGTHRQISINPG 324 (555)
T ss_dssp HHTTTCEEEEESHHHHHHHHHHHGGGSCCCCGGGEECGGGTTTSCGGGEEEEECCTTCCTTSHHHHHHSSCCSSCCCCTT
T ss_pred HHHHCCEEEEeCHHHHHHHHHHHHcCCccCCcccEeCHHHHhhCCCCCEEEEeCCCCchHHHHHHHHhcCCCCccccCCC
Confidence 9999999999997664 445566541 11 221111 112 24555555 11 1 1122222 1
Q ss_pred EEEEeccceeecccCce-ee---eccCCeeEE-----EEeecCCCCHHHHHHHHHHcCCCEEEEEecCCCCcCchHHHHH
Q 001045 294 VGFVPTGWTYEVKRNKF-AV---RSKDAFEIH-----LVPYSEHSNYDELREYVKFLKPKRVIPTVGMDIEKLDSKHANK 364 (1176)
Q Consensus 294 v~i~ptGw~~~~~~~~~-~v---~~~~~~~v~-----~i~~SgHAs~~EL~~~V~~lrPk~VIPvHG~~~e~~~~~E~~~ 364 (1176)
-.++.+||......... .+ ..+.++++. .+|+||||+++||+.|++.++|+++||+|| |+++
T Consensus 325 d~vi~s~~~ipGne~~~~~~~~~l~~~g~~v~~~~~~~~h~SgHa~~~eL~~~~~~~~Pk~~ipvHG---------e~~~ 395 (555)
T 3zq4_A 325 DTVVFSSSPIPGNTISVSRTINQLYRAGAEVIHGPLNDIHTSGHGGQEEQKLMLRLIKPKFFMPIHG---------EYRM 395 (555)
T ss_dssp CEEEECSCCCTTCHHHHHHHHHHHHHTTCEEECSSSSCCCCCSSCCHHHHHHHHHHSCEEEEEEESB---------CHHH
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHHHCCCEEEecCCcceEEeCCCCHHHHHHHHHHhCCCEEEEcCC---------CHHH
Confidence 12345788654422110 00 022334443 489999999999999999999999999999 8888
Q ss_pred HHHHHHHHHHH
Q 001045 365 MRKYFAGLVDE 375 (1176)
Q Consensus 365 m~k~f~~l~~~ 375 (1176)
+.+|.+ +..+
T Consensus 396 ~~~~~~-~a~~ 405 (555)
T 3zq4_A 396 QKMHVK-LATD 405 (555)
T ss_dssp HHHHHH-HHHH
T ss_pred HHHHHH-HHHH
Confidence 888776 4444
No 12
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*
Probab=100.00 E-value=1.3e-31 Score=332.90 Aligned_cols=315 Identities=19% Similarity=0.261 Sum_probs=229.8
Q ss_pred CCCCeeE-eCCccEEEecCCc---------------------CC--CCccEEEeccCChhhhCCcccCC----CCceEEe
Q 001045 37 TFPPSKH-VPNTRFLIDAFRY---------------------AA--DFSVSYFLSHFHSDHYTGLSPSW----SKGIIFC 88 (1176)
Q Consensus 37 ~~p~~~~-ipg~~~liD~~~~---------------------~~--~~i~avfITHaH~DHiggL~~l~----~~~pIY~ 88 (1176)
+.+|+.+ .++..++|||+.. .. .++++|||||+|.||+|||+.++ +++||||
T Consensus 201 g~s~~LI~~~~~~ILID~G~~~~~~~~g~~~l~~l~~~~~g~~~~~~~Id~VllTH~H~DHiGglp~L~~~~~~~~pIy~ 280 (651)
T 3af5_A 201 GRSALLVQTDESFVLVDFGVNVAMLNDPYKAFPHFDAPEFQYVLREGLLDAIIITHAHLDHCGMLPYLFRYNLFDGPIYT 280 (651)
T ss_dssp SCCEEEEEESSCEEEECCCCCGGGTTCHHHHSCCTTCHHHHHHHHTTCCCEEECSCSSHHHHTTHHHHHHTTCCCSCEEE
T ss_pred CCcEEEEEECCcEEEEeCCCChhccccchhhcccccchhhccCcccCCCCEEEECCCChHhhcCHHHHHhcCCCCceEEE
Confidence 3567877 7889999999832 12 55899999999999999999764 3789999
Q ss_pred CHHHHHHHHHhhc----------cC-C----------CceEEeCCCceEEE-CCEEEEEEecCCCcCceEEEEEEcCCCC
Q 001045 89 SEITSRLLSQILN----------IN-P----------KFIYPLPIKIPVLI-DGCEVVLVGANHCPGAVQFLFKVPGRNG 146 (1176)
Q Consensus 89 s~~T~~ll~~~l~----------~~-~----------~~i~~l~~~~~~~i-~~~~Vt~~~a~H~pGS~~flie~~~~~G 146 (1176)
++.|.+++...+. .. . ..++++++++++.+ ++++|++++++|++|+++|.++.++
T Consensus 281 t~~t~~ll~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~ggi~v~~~~~gH~~Gs~~~~i~~~~--- 357 (651)
T 3af5_A 281 TPPTRDLMVLLQKDFIEIQQSNGQDPLYRPRDIKEVIKHTITLDYGEVRDISPDIRLTLHNAGHILGSAIVHLHIGN--- 357 (651)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHTEEECCTTCCEEEETTEEEEEEECSSSTTCEEEEEEETT---
T ss_pred cHHHHHHHHHHHHHHHHHhhhcccCCCCCHHHHHHhhhcEEEeCCCCEEEecCCEEEEEecCCCCcCcEEEEEEECC---
Confidence 9999998875432 00 0 13678999999999 9999999999999999999999864
Q ss_pred ccc--EEEEECCCCCcccccchhhhhccCCCcEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHHhhhccccCCCeEEEEE
Q 001045 147 GFE--RYVHTGDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRVGGELNEGLQKRVLFLV 224 (1176)
Q Consensus 147 ~~~--~IlYTGDfr~~~~~~~~~~l~~~~~vDvLI~EsTy~~~~~~~p~~~e~~~~l~~~i~~~~~~~~~~~~g~vlvli 224 (1176)
+ +++||||+++.+..+..+....+.++|+||+||||+++.+.++++.+..+.+.+.+.+++.. +++ |++
T Consensus 358 --~~~~ilftGD~~~~~~~ll~~~~~~~~~~DvLI~EsT~~~~~~~h~s~~~~~~~l~~~i~~~l~~-----~g~--vlI 428 (651)
T 3af5_A 358 --GLHNIAITGDFKFIPTRLLEPANAKFPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHNTIKR-----GGK--VLI 428 (651)
T ss_dssp --TTTCEEECCSCCCSCCSSCCCCCCBCSSCSEEEEECTTCSTTCCCCCHHHHHHHHHHHHHHHHHT-----TCE--EEE
T ss_pred --CceEEEEeCCCCCCcccccccccccCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhC-----CCE--EEE
Confidence 4 89999999998775443221124789999999999998777999999999999999988765 677 799
Q ss_pred eccccchHHHHHHHHHHcCC------cEEEccchHHHHHHhC----CCC-----------CCcc--------c---c-C-
Q 001045 225 ATYVIGKEKILIEIFKKCGR------KVCVDSRKMEVLRVLG----YGD-----------SGVF--------T---E-D- 270 (1176)
Q Consensus 225 ~~~slGR~q~ll~ia~~~g~------~I~vdg~~~~il~~lg----~~~-----------~~~~--------t---~-d- 270 (1176)
|+|++||.|+++.++.++++ ||+++++.++.+..+. +.. ...| . . .
T Consensus 429 p~favgR~qell~~l~~~~~~~~l~~~I~~dg~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~f~~~~~~~v~~~~~~~~ 508 (651)
T 3af5_A 429 PAMAVGRAQEVMMVLEEYARIGGIEVPIYLDGMIWEATAIHTAYPEYLSRRLREQIFKEGYNPFLSEIFHPVANSRERQD 508 (651)
T ss_dssp ECCTTTHHHHHHHHHHHHHTTTCCCSCEEEESSHHHHHHHHHTCGGGSCHHHHHHTTTSSCCSTTCTTEEECCSHHHHHH
T ss_pred eccCccHHHHHHHHHHHhhhhcCCCCcEEEechHHHHHHHHHHhHHhcCHHHHHHHHhccCCCccCCceEEcCCHHHHHH
Confidence 99999999999999998875 9999998876553321 110 0111 1 0 0
Q ss_pred --C-CCCeEEEecCh-----H---HHHhcCCCceEEEEeccceeecccC------ceee----------eccCCeeEEEE
Q 001045 271 --E-SETDVHVVGWN-----E---IMVERGYDKVVGFVPTGWTYEVKRN------KFAV----------RSKDAFEIHLV 323 (1176)
Q Consensus 271 --~-~~~~I~v~~~~-----~---~~~~~g~~~~v~i~ptGw~~~~~~~------~~~v----------~~~~~~~v~~i 323 (1176)
. ....|++++.+ . .+.....++...++.+||+.....+ ...+ .....+.++.+
T Consensus 509 ~~~~~~~~vIia~~gm~~gg~~~~~l~~~~~~~~~~vi~sg~~~~gt~gr~l~~g~~~i~~~~~~G~~~~v~v~~~v~~i 588 (651)
T 3af5_A 509 IIDSNEPAIIIASSGMLVGGPSVEYFKQLAPDPKNSIIFVSYQAEGTLGRQVQSGIREIPMVGEEGRTEVIKVNMEVHTI 588 (651)
T ss_dssp HHHSCSCEEEEESCTTSSSSHHHHHHHHHTTCTTCEEEECSCCCTTCHHHHHHHTCSEEEEECGGGCEEEEECCSEEEEC
T ss_pred HhcCCCCEEEEECCCCCCCCHHHHHHHHHhCCCCCEEEEeCCCCCCcHHHHHHhccceeeehhcCCCceEEEeEEEEEEc
Confidence 0 22345555432 1 1122222222233448888764311 1111 12245677889
Q ss_pred e-ecCCCCHHHHHHHHHHcC--CCEEEEEecCCCCcCchHHHHHHHHHHHHHH
Q 001045 324 P-YSEHSNYDELREYVKFLK--PKRVIPTVGMDIEKLDSKHANKMRKYFAGLV 373 (1176)
Q Consensus 324 ~-~SgHAs~~EL~~~V~~lr--Pk~VIPvHG~~~e~~~~~E~~~m~k~f~~l~ 373 (1176)
+ ||||||++||++|++.++ |++|||||| |++++.. |+.++
T Consensus 589 ~g~SgHad~~eL~~~i~~~~~~P~~vi~vHG---------e~~~~~~-la~~~ 631 (651)
T 3af5_A 589 DGFSGHADRRELMNYVAKVRPRPERIITVHG---------EPQKCLD-LATSI 631 (651)
T ss_dssp GGGCSSCCHHHHHHHHHHCBSCCSEEEEESS---------CHHHHHH-HHHHH
T ss_pred CcccCcCCHHHHHHHHHHhhcCCCEEEEEcC---------CHHHHHH-HHHHH
Confidence 9 999999999999999999 999999999 5666554 44444
No 13
>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} SCOP: d.157.1.10 PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A*
Probab=100.00 E-value=5.2e-32 Score=321.35 Aligned_cols=297 Identities=18% Similarity=0.241 Sum_probs=224.0
Q ss_pred CCCeeE-eCCccEEEecCCcC--------------CCCccEEEeccCChhhhCCcccCC---CCceEEeCHHHHHHHHHh
Q 001045 38 FPPSKH-VPNTRFLIDAFRYA--------------ADFSVSYFLSHFHSDHYTGLSPSW---SKGIIFCSEITSRLLSQI 99 (1176)
Q Consensus 38 ~p~~~~-ipg~~~liD~~~~~--------------~~~i~avfITHaH~DHiggL~~l~---~~~pIY~s~~T~~ll~~~ 99 (1176)
.+|+.+ .++..++|||+-.. ..++++|||||+|.||+||++.+. .++||||++.|.+++...
T Consensus 14 ~s~~li~~~~~~iLID~G~~~~~~~~~~~~~~~~~~~~Id~VllTH~H~DH~gglp~l~~~~~~~~Iy~t~~t~~l~~~~ 93 (431)
T 3iek_A 14 GSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIV 93 (431)
T ss_dssp CCCEEEEETTEEEEECCCCCCGGGGGGGGSCCSSCGGGCCEEECSCCCHHHHTTHHHHHHTTCCSCEEECHHHHHHHHHH
T ss_pred CcEEEEEECCeEEEEeCCCCcchhhccchhhcCCCcccCCEEEECCCChHHhccHHHHHHcCCCCeEEEcHHHHHHHHHH
Confidence 368888 78999999998311 147899999999999999999854 468999999999998865
Q ss_pred hc----cCC-------------CceEEeCCCceEEECCEEEEEEecCCCcCceEEEEEEcCCCCcccEEEEECCCCCccc
Q 001045 100 LN----INP-------------KFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFCKT 162 (1176)
Q Consensus 100 l~----~~~-------------~~i~~l~~~~~~~i~~~~Vt~~~a~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~~~ 162 (1176)
+. +.. ..++++++++++.+++++|+++++||++||++|+|+.++ ++|+||||+++.+.
T Consensus 94 l~d~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~l~g~~v~~~~agH~~Gs~~~~i~~~~-----~~ilfsGD~~~~~~ 168 (431)
T 3iek_A 94 LEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEG-----RTLVYSGDLGNREK 168 (431)
T ss_dssp HHHHHHHCSSCSSCHHHHHHHHHTEEECCTTCCEEETTEEEEEEECCSSTTCEEEEEEETT-----EEEEECCCCCCTTS
T ss_pred HHHHHhhcccCCCCHHHHHHHHhccEEcCCCCeEEeCCEEEEEEeCCCCcCceEEEEEECC-----EEEEEeCCCCCCCC
Confidence 41 111 247889999999999999999999999999999999854 69999999998776
Q ss_pred ccchhhhhccCCCcEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHHhhhccccCCCeEEEEEeccccchHHHHHHHHHHc
Q 001045 163 MLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRVGGELNEGLQKRVLFLVATYVIGKEKILIEIFKKC 242 (1176)
Q Consensus 163 ~~~~~~l~~~~~vDvLI~EsTy~~~~~~~p~~~e~~~~l~~~i~~~~~~~~~~~~g~vlvli~~~slGR~q~ll~ia~~~ 242 (1176)
...... ..+.++|+||+||||+++. ++++.+..+++.+.+++++.. +|+ |+||+|++||.|+++.+++++
T Consensus 169 ~~l~~~-~~~~~~D~LI~EsTy~~~~--h~~~~~~~~~l~~~i~~~~~~-----gg~--vlIp~fa~gR~qell~~l~~~ 238 (431)
T 3iek_A 169 DVLPDP-SLPPLADLVLAEGTYGDRP--HRPYRETVREFLEILEKTLSQ-----GGK--VLIPTFAVERAQEILYVLYTH 238 (431)
T ss_dssp SSSCCC-CBCCCCSEEEEECTTTTCC--CCCHHHHHHHHHHHHHHHHHT-----TCE--EEEECCTTTHHHHHHHHHHHH
T ss_pred cccCCc-cccCCccEEEEEcccCCcC--CCChHHHHHHHHHHHHHHHHc-----CCe--EEEEeccchHHHHHHHHHHHH
Confidence 543211 1237899999999999964 778999999999999998766 678 789999999999999999998
Q ss_pred C-----CcEEEcc-chHHHHHHhC----C--------------C--CCCc-ccc---------CCCCCeEEEecCh----
Q 001045 243 G-----RKVCVDS-RKMEVLRVLG----Y--------------G--DSGV-FTE---------DESETDVHVVGWN---- 282 (1176)
Q Consensus 243 g-----~~I~vdg-~~~~il~~lg----~--------------~--~~~~-~t~---------d~~~~~I~v~~~~---- 282 (1176)
+ .||++++ +..++++.+. + | .+.+ +.. +.....|++++.+
T Consensus 239 ~~~~~~~pi~~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~pf~~~~~~~~~~~~~~~~~~~~~~p~viia~~gm~~~ 318 (431)
T 3iek_A 239 GHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAG 318 (431)
T ss_dssp GGGSCCCCEEEECHHHHHHHHHGGGGGGGSCHHHHHHHHTTSCTTCCTTEEECCSHHHHHHHHHSCSSEEEEESCTTSSS
T ss_pred HHhccCCCEEEeChHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCCCCCCeEEeCCHHHHHHHhcCCCCeEEEecCCCCCC
Confidence 7 8999995 5545444331 0 1 0000 000 0123456666554
Q ss_pred ----HHHHhcCCCceEEEEeccceeecccCc--------eee---eccCCeeEEEE-eecCCCCHHHHHHHHHHcCCCEE
Q 001045 283 ----EIMVERGYDKVVGFVPTGWTYEVKRNK--------FAV---RSKDAFEIHLV-PYSEHSNYDELREYVKFLKPKRV 346 (1176)
Q Consensus 283 ----~~~~~~g~~~~v~i~ptGw~~~~~~~~--------~~v---~~~~~~~v~~i-~~SgHAs~~EL~~~V~~lrPk~V 346 (1176)
..+....+++...++.+||+.+.+.++ +.+ ....+++|+.+ .||+|||++||.+|++.++ +|
T Consensus 319 G~~~~~l~~~~~~~~n~ii~~gyq~~gt~g~~l~~~~~~v~~~g~~~~v~a~v~~~~~~saHad~~~l~~~~~~~~--~v 396 (431)
T 3iek_A 319 GRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEP--RV 396 (431)
T ss_dssp SHHHHHHHHHTTCTTCEEEECSCCCTTSHHHHHHTCCSEEEETTEEEECCSEEEECGGGCSSCCHHHHHHHHTTCS--EE
T ss_pred ChHHHHHHHhcCCCCCeEEEECCCCCCChHHHhhcCCcEEEECCEEEEEEEEEEEECCccccCCHHHHHHHHHhCC--eE
Confidence 223333444444556699998765332 111 24566788999 5999999999999999875 99
Q ss_pred EEEec
Q 001045 347 IPTVG 351 (1176)
Q Consensus 347 IPvHG 351 (1176)
+.|||
T Consensus 397 ~lvHg 401 (431)
T 3iek_A 397 VLVHG 401 (431)
T ss_dssp EEESS
T ss_pred EEECC
Confidence 99999
No 14
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A
Probab=100.00 E-value=5.9e-32 Score=323.43 Aligned_cols=311 Identities=19% Similarity=0.231 Sum_probs=217.8
Q ss_pred ccCCCCCCCCCCCCCCCCCeeE-eCCccEEEecCCc---------------CCCCccEEEeccCChhhhCCcccCC----
Q 001045 22 QSSPPDSLIFPPIPRTFPPSKH-VPNTRFLIDAFRY---------------AADFSVSYFLSHFHSDHYTGLSPSW---- 81 (1176)
Q Consensus 22 ~~~l~s~~~~p~~~r~~p~~~~-ipg~~~liD~~~~---------------~~~~i~avfITHaH~DHiggL~~l~---- 81 (1176)
+..||++... +.+|+.+ ..+..++|||+-. ...+|++|||||+|.||+|||+.+.
T Consensus 14 i~~LG~~~~v-----g~s~~li~~~~~~iLID~G~~~~~~~~~~~~~l~~~~~~~Id~VllTH~H~DH~ggl~~l~~~~~ 88 (459)
T 2i7t_A 14 IRPLGAGQEV-----GRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88 (459)
T ss_dssp EEEEESSSSS-----SSCEEEEEETTEEEEECCCCCTTSCGGGGSCCGGGSCGGGCCEEECCCSSHHHHTTHHHHHHHSS
T ss_pred EEEEecCCCC-----CCCEEEEEECCeEEEEeCCCCcCcccccccCcccccCcccCcEEEECCCChhhhhhhHHHHHhcC
Confidence 3345655443 4678888 7889999999832 1147899999999999999999753
Q ss_pred CCceEEeCHHHHHHHHHhhc----c----------C-------CCceEEeCCCceEEECCEEEEEEecCCCcCceEEEEE
Q 001045 82 SKGIIFCSEITSRLLSQILN----I----------N-------PKFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFK 140 (1176)
Q Consensus 82 ~~~pIY~s~~T~~ll~~~l~----~----------~-------~~~i~~l~~~~~~~i~~~~Vt~~~a~H~pGS~~flie 140 (1176)
.+++|||++.|..++...+. + . ...+..+++++++.+++++|+++++||++|+++|+++
T Consensus 89 ~~~~iy~t~~t~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~GH~~Gs~~~~i~ 168 (459)
T 2i7t_A 89 FKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIE 168 (459)
T ss_dssp CCSEEEEEHHHHHHHHHHHHHHCC---------CCCHHHHHHHGGGEEEECTTCCEEETTEEEEEEECCSSTTCEEEEEE
T ss_pred CCCCEEechHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHhccEEeCCCCEEEECCEEEEEEeCCCccCcEEEEEE
Confidence 36899999999988765431 0 0 1246789999999999999999999999999999999
Q ss_pred EcCCCCcccEEEEECCCCCcccccchhhhhccCCCcEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHHhhhccccCCCeE
Q 001045 141 VPGRNGGFERYVHTGDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRVGGELNEGLQKRV 220 (1176)
Q Consensus 141 ~~~~~G~~~~IlYTGDfr~~~~~~~~~~l~~~~~vDvLI~EsTy~~~~~~~p~~~e~~~~l~~~i~~~~~~~~~~~~g~v 220 (1176)
.++ ++|+||||+...+............++|+||+||||+++ .++++.+..+.+.+.+.+++.. +|+
T Consensus 169 ~~~-----~~il~sGD~~~~~~~~~~~~~~~~~~~D~Li~Esty~~~--~~~~~~~~~~~l~~~i~~~~~~-----~g~- 235 (459)
T 2i7t_A 169 IAG-----VKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTH--IHEKREEREARFCNTVHDIVNR-----GGR- 235 (459)
T ss_dssp ETT-----EEEEECCSCCCC-----CCCCCCSSCCSEEEEECTTTTC--CCCCHHHHHHHHHHHHHHHHHT-----TCE-
T ss_pred ECC-----cEEEEeCCCCCCCCcccCCCCcCCCCCeEEEECCCCCCC--CCCChHHHHHHHHHHHHHHHHC-----CCE-
Confidence 854 699999999987764332211112589999999999985 3678888888999999988765 677
Q ss_pred EEEEeccccchHHHHHHHHHHc--------CCcEEEccch-H---HHHHHhC-CCCCC----------c-------c-cc
Q 001045 221 LFLVATYVIGKEKILIEIFKKC--------GRKVCVDSRK-M---EVLRVLG-YGDSG----------V-------F-TE 269 (1176)
Q Consensus 221 lvli~~~slGR~q~ll~ia~~~--------g~~I~vdg~~-~---~il~~lg-~~~~~----------~-------~-t~ 269 (1176)
|+||+|++||.|+++.++.++ +.||++++.. . ++++.+. +.... + + +.
T Consensus 236 -vlip~fa~gr~qell~~l~~~~~~~~~~~~~pi~~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 314 (459)
T 2i7t_A 236 -GLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFKHISNLKSM 314 (459)
T ss_dssp -EEEECCSSSSHHHHHHHHHHHHHHCGGGTTSCEEEC---------------------------------CCSEEECCCT
T ss_pred -EEEEecchhHHHHHHHHHHHHHHhcCCCCCccEEEECHHHHHHHHHHHHHHHHHhHHHHHHhcccCCcCCCcceeeCCH
Confidence 799999999999999888765 6899998633 2 2333221 10000 0 0 00
Q ss_pred ---CCCCCeEEEecCh--------HHHHhcCCCceEEEEeccceeecccCc------eee------eccCCeeEEEEeec
Q 001045 270 ---DESETDVHVVGWN--------EIMVERGYDKVVGFVPTGWTYEVKRNK------FAV------RSKDAFEIHLVPYS 326 (1176)
Q Consensus 270 ---d~~~~~I~v~~~~--------~~~~~~g~~~~v~i~ptGw~~~~~~~~------~~v------~~~~~~~v~~i~~S 326 (1176)
+.....|++++.+ ..+..+..++...++.+||+.+.+.++ ..+ ....+++++.++||
T Consensus 315 ~~~~~~~~~viia~~gm~~~g~~~~~l~~~~~~~~~~ii~~gy~~~gt~g~~l~~~~~~~~~~~g~~~~~~~~v~~~~~S 394 (459)
T 2i7t_A 315 DHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFS 394 (459)
T ss_dssp TSSCCCSSEEEEESCTTCSSHHHHHHHHHHTTCTTCEEEECSCCCTTSHHHHHTTCCSEEECTTSCEEECCSEEEECCCS
T ss_pred HHhcCCCCeEEEEcCcccCCCHHHHHHHHHcCCCCCeEEEEecCCCCChHHHHhhCCceeeeeCCcEEEEEEEEEEeeec
Confidence 1123456666554 122333334334455699987654221 011 12346788899999
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEEec
Q 001045 327 EHSNYDELREYVKFLKPKRVIPTVG 351 (1176)
Q Consensus 327 gHAs~~EL~~~V~~lrPk~VIPvHG 351 (1176)
+|||++||.+||+.++|++|++|||
T Consensus 395 ~Had~~~l~~~i~~~~p~~v~~vHG 419 (459)
T 2i7t_A 395 AHTDYQQTSEFIRALKPPHVILVHG 419 (459)
T ss_dssp CCCCHHHHHHHHHHHCCSEEEEESS
T ss_pred ccCCHHHHHHHHHhcCCCeEEEeCC
Confidence 9999999999999999999999999
No 15
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.98 E-value=4.1e-31 Score=327.74 Aligned_cols=313 Identities=20% Similarity=0.259 Sum_probs=227.9
Q ss_pred CCCCeeE-eCCccEEEecCCc------------------CCCCccEEEeccCChhhhCCcccCC---CCceEEeCHHHHH
Q 001045 37 TFPPSKH-VPNTRFLIDAFRY------------------AADFSVSYFLSHFHSDHYTGLSPSW---SKGIIFCSEITSR 94 (1176)
Q Consensus 37 ~~p~~~~-ipg~~~liD~~~~------------------~~~~i~avfITHaH~DHiggL~~l~---~~~pIY~s~~T~~ 94 (1176)
+.+|+.+ .++..++|||+.. ...++++|||||+|.||+|||+.++ .++||||++.|.+
T Consensus 192 g~s~~lI~~~~~~ILID~G~~~~~~~~~~~~~~l~~l~~~~~~Id~VlLTH~H~DHiGglp~L~~~~~~~~Iy~t~~t~~ 271 (636)
T 2ycb_A 192 GRSCLYLQTPNSRVLLDCGVNVAGGDDKNSYPYLNVPEFTLDSLDAVIITHAHLDHSGFLPYLYHYGYDGPVYCTAPTRD 271 (636)
T ss_dssp SCCEEEEECSSCEEEEEECCCCSSCCHHHHSCCTTSTTCCTTTCCEEECSSSSHHHHTTHHHHHHTTCCSCEEECHHHHH
T ss_pred CCCEEEEEECCeEEEEeCCCCcccccchhhccccccccCCcccCcEEEECCCChHHhcCHHHHHhcCCCCeEEEcchHHH
Confidence 4567777 6888999999732 1256899999999999999999864 4789999999999
Q ss_pred HHHHhhc----------cCC-----------CceEEeCCCceEEE-CCEEEEEEecCCCcCceEEEEEEcCCCCccc--E
Q 001045 95 LLSQILN----------INP-----------KFIYPLPIKIPVLI-DGCEVVLVGANHCPGAVQFLFKVPGRNGGFE--R 150 (1176)
Q Consensus 95 ll~~~l~----------~~~-----------~~i~~l~~~~~~~i-~~~~Vt~~~a~H~pGS~~flie~~~~~G~~~--~ 150 (1176)
++...+. ... ..+.++++++++.+ ++++|+++++||++|+++|+|+.++ + +
T Consensus 272 l~~~~l~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~g~~~~l~ggi~v~~~~~gH~~Gs~~~~i~~~~-----~~~~ 346 (636)
T 2ycb_A 272 LMTLLQLDHIDIAHREDEPLPFNVKHVKKSVKHTITLDYGEVTDIAPDIRLTLHNAGHILGSAMAHLHIGD-----GQHN 346 (636)
T ss_dssp HHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHTEEECCTTCCEEEETTEEEEEEECCSSTTCEEEEEEETT-----TTTC
T ss_pred HHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHhceEEeCCCCEEEecCCeEEEEeCCCCCCCcEEEEEEECC-----CeEE
Confidence 8875432 000 13678999999999 9999999999999999999999864 4 8
Q ss_pred EEEECCCCCcccccchhhhhccCCCcEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHHhhhccccCCCeEEEEEeccccc
Q 001045 151 YVHTGDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRVGGELNEGLQKRVLFLVATYVIG 230 (1176)
Q Consensus 151 IlYTGDfr~~~~~~~~~~l~~~~~vDvLI~EsTy~~~~~~~p~~~e~~~~l~~~i~~~~~~~~~~~~g~vlvli~~~slG 230 (1176)
|+||||+++....+.......+.++|+||+||||+++.+.++++++..+.+.+.+++++.. +++ +++|+|++|
T Consensus 347 ilftGD~~~~~~~ll~~~~~~~~~~D~LI~EsT~~~~~~~h~s~~~~~~~l~~~i~~~~~~-----~g~--vlIp~fa~G 419 (636)
T 2ycb_A 347 MVYTGDFKYEQSRLLEAAANRFPRIETLVMESTYGGHEDVQPSRNRAEKELVKTIYSTLRR-----GGK--ILIPVFAVG 419 (636)
T ss_dssp EEECCSCCSSCCSSSCCCCCCCSCCSEEEEECTTCSGGGCCCCHHHHHHHHHHHHHHHHHH-----TCC--EEEECCTTT
T ss_pred EEEECCCCCCcccccCCcccCCCCCeEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHc-----CCE--EEEEECCCc
Confidence 9999999988765443221124789999999999987666899999999999999988665 677 789999999
Q ss_pred hHHHHHHHHHHcC-------CcEEEccchHHHHHHh----CCCC-----------CCcc-----c--c--------CCCC
Q 001045 231 KEKILIEIFKKCG-------RKVCVDSRKMEVLRVL----GYGD-----------SGVF-----T--E--------DESE 273 (1176)
Q Consensus 231 R~q~ll~ia~~~g-------~~I~vdg~~~~il~~l----g~~~-----------~~~~-----t--~--------d~~~ 273 (1176)
|.|+++.++.+++ .||+++++.++.+..+ ++.. ...| . . ....
T Consensus 420 R~qell~~l~~~~~~~~~~~~~V~~dg~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~ 499 (636)
T 2ycb_A 420 RAQELMIVLEEYIRTGIIDEVPVYIDGMIWEANAIHTARPEYLSKDLRDQIFHMGHNPFISDIFHKVNGMDERREIVEGE 499 (636)
T ss_dssp HHHHHHHHHHHHHHTTSSCCCCEEEEHHHHHHHHHHHHSGGGSCHHHHHHHHTTCCCGGGCTTEEEECCHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHhCCCCCCeEEEehHHHHHHHHHHHhHHhhCHHHHHHHHhccCCcccCCceEEeCCHHHHHHhccCC
Confidence 9999999998776 4999999877644332 1110 0111 0 0 0012
Q ss_pred CeEEEecC-h----H---HHHh--cCCCceEEEEeccceeeccc------Cceee----------eccCCeeEEEEe-ec
Q 001045 274 TDVHVVGW-N----E---IMVE--RGYDKVVGFVPTGWTYEVKR------NKFAV----------RSKDAFEIHLVP-YS 326 (1176)
Q Consensus 274 ~~I~v~~~-~----~---~~~~--~g~~~~v~i~ptGw~~~~~~------~~~~v----------~~~~~~~v~~i~-~S 326 (1176)
..|++++. + . .+.. ..+...| +.+||+..... +...+ .....+.++.++ ||
T Consensus 500 ~~vIiat~gm~~gg~~~~~l~~~~~~~~~~v--i~sg~~~~Gt~gr~l~~g~~~i~~~~~~G~~~~v~v~~~v~~i~~~S 577 (636)
T 2ycb_A 500 PSIILSTSGMLTGGNSLEYFKWLCEDPDNSL--VFVGYQAEGSLGRRIQKGWKEIPLKDEDDKMRVYNVRMNIKTIEGFS 577 (636)
T ss_dssp SCEEEESCSSSSSHHHHHHHHHHTTCTTSEE--EECSCCCSSSHHHHHHTTCCEEEEECSSSCEEEEECCSEEEECCSCC
T ss_pred CEEEEecCCccCCChHHHHHHHHhCCCCCEE--EEecCCCCCCHHHHhhcCCceeeeeccCCceeEEEeEEEEEEECCcc
Confidence 33444432 2 1 1122 2233344 34888876441 11111 122456778899 99
Q ss_pred CCCCHHHHHHHHHHcC--CCEEEEEecCCCCcCchHHHHHHHHHHHHHH
Q 001045 327 EHSNYDELREYVKFLK--PKRVIPTVGMDIEKLDSKHANKMRKYFAGLV 373 (1176)
Q Consensus 327 gHAs~~EL~~~V~~lr--Pk~VIPvHG~~~e~~~~~E~~~m~k~f~~l~ 373 (1176)
||||++||++|++.++ |++|||||| |++++.. |+.++
T Consensus 578 gHad~~eL~~~i~~~~~~Pk~vi~vHG---------e~~~~~~-~a~~~ 616 (636)
T 2ycb_A 578 GHSDRRQLMEYVKRISPKPEKILLCHG---------DNYKTLD-LASSI 616 (636)
T ss_dssp SSCCHHHHHHHHHSCSSCCSEEEEESS---------CHHHHHH-HHHHH
T ss_pred eeCCHHHHHHHHHHhccCCCEEEEECC---------CHHHHHH-HHHHH
Confidence 9999999999999999 999999999 6666655 44444
No 16
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}
Probab=99.98 E-value=4.1e-31 Score=327.67 Aligned_cols=314 Identities=20% Similarity=0.288 Sum_probs=221.1
Q ss_pred CCCeeE-eCCccEEEecCCc-----------------CCCCccEEEeccCChhhhCCcccCC---CCceEEeCHHHHHHH
Q 001045 38 FPPSKH-VPNTRFLIDAFRY-----------------AADFSVSYFLSHFHSDHYTGLSPSW---SKGIIFCSEITSRLL 96 (1176)
Q Consensus 38 ~p~~~~-ipg~~~liD~~~~-----------------~~~~i~avfITHaH~DHiggL~~l~---~~~pIY~s~~T~~ll 96 (1176)
.+|+.+ .++..++|||+.. ...++++|||||+|.||+|||+.+. .+++|||++.|..++
T Consensus 197 ~s~~LI~~~~~~ILID~G~~~~~~~~~l~~l~~~~~~~~~~Id~VllTH~H~DHiGgl~~L~~~~~~~~Iy~t~~t~~ll 276 (640)
T 2xr1_A 197 RSCFLLSTPESRILIDCGVNVGSDENMTPYLYVPEVFPLNQIDAVIVTHAHLDHQGLVPLLFKYGYEGPVYCTPPTRDLM 276 (640)
T ss_dssp CCEEEEECSSCEEEECCCCBCSSCSSCCCCTTSTTTCSGGGCCEEECCSSCHHHHTTHHHHHHTTCCSCEEECHHHHHHH
T ss_pred CcEEEEEECCeEEEEeCCCCccccccccccccccccCCcccCcEEEECCCChhhhccHHHHHhcCCCCeEEECHHHHHHH
Confidence 567777 6888999999732 2245899999999999999999764 478999999999987
Q ss_pred HHhhc----------cC-C----------CceEEeCCCceEEE-CCEEEEEEecCCCcCceEEEEEEcCCCCccc--EEE
Q 001045 97 SQILN----------IN-P----------KFIYPLPIKIPVLI-DGCEVVLVGANHCPGAVQFLFKVPGRNGGFE--RYV 152 (1176)
Q Consensus 97 ~~~l~----------~~-~----------~~i~~l~~~~~~~i-~~~~Vt~~~a~H~pGS~~flie~~~~~G~~~--~Il 152 (1176)
...+. .. . ..+..+++++++.+ ++++|+++++||++||++|+++.++ + +++
T Consensus 277 ~~~l~d~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~g~~i~l~gg~~v~~~~~GH~~Gs~~~~i~~~~-----~~~~il 351 (640)
T 2xr1_A 277 VLLQLDYIDVAAKEGKKIPYESGMVAKTLKHTIPLDYEEVTDIAPDIKLTFHNAGHILGSAISHFHIGD-----GLHNVV 351 (640)
T ss_dssp HHHHHHHHHHHHHHTCCCCSCHHHHHHHHHTEEECCTTCCEEEETTEEEEEEECSSSTTCEEEEEEETT-----TTEEEE
T ss_pred HHHHHHHHHHhhhcccCCCCCHHHHHHHHhceEEeCCCCEEEecCCEEEEEEcCCCCcCcEEEEEEECC-----ceEEEE
Confidence 65432 01 0 13678899999999 9999999999999999999999864 5 899
Q ss_pred EECCCCCcccccchhhhhccCCCcEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHHhhhccccCCCeEEEEEeccccchH
Q 001045 153 HTGDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRVGGELNEGLQKRVLFLVATYVIGKE 232 (1176)
Q Consensus 153 YTGDfr~~~~~~~~~~l~~~~~vDvLI~EsTy~~~~~~~p~~~e~~~~l~~~i~~~~~~~~~~~~g~vlvli~~~slGR~ 232 (1176)
||||+++....+..+....+.++|+||+||||+++.+.++++.+..+.+.+.++..+.. +++ +++|+|++||.
T Consensus 352 ftGD~~~~~~~ll~~~~~~~~~~DvLi~EsT~g~~~~~h~s~~~~~~~l~~~i~~~~~~-----~g~--vlIp~favGR~ 424 (640)
T 2xr1_A 352 FTGDYKYEKTRLFDPAVNKFPRVETVISEATYGNANAFQPALKDAEKHLQMVVKNTIER-----GGI--AVIPAFAVGRS 424 (640)
T ss_dssp ECCSCCSSCCSSCCCCCCBCSCCSEEEEECTTCSTTCCCCCHHHHHHHHHHHC-------------C--EEEECCTTTHH
T ss_pred EECCCCCCCccccccccccCCCCcEEEECCCCCCCccCCCCHHHHHHHHHHHHHHHHhc-----CCe--EEEEecccchH
Confidence 99999987765443221124689999999999997777899999999999998887544 567 78999999999
Q ss_pred HHHHHHHHHcC-------CcEEEccchHHHHHHh----CCCC-----------CCcc--------c---c-C---C-CCC
Q 001045 233 KILIEIFKKCG-------RKVCVDSRKMEVLRVL----GYGD-----------SGVF--------T---E-D---E-SET 274 (1176)
Q Consensus 233 q~ll~ia~~~g-------~~I~vdg~~~~il~~l----g~~~-----------~~~~--------t---~-d---~-~~~ 274 (1176)
|+++.++++++ .||+++++.++.+..+ ++.. .+.| . . . . ...
T Consensus 425 qell~~l~~~~~~~~~~~~~V~~dg~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 504 (640)
T 2xr1_A 425 QEVMIVLEESIRKGLIPEVPVYLDGMIWEATAIHATHPEYLNNDLRKLIFQKGQNPFLSECFKPVDSHEARQKIIQNPQP 504 (640)
T ss_dssp HHHHHHHHHHHHHTSSCCCCEEEESSHHHHHHHHHHCGGGSCHHHHHHC------CTTCTTEEEEC-CHHHHHC----CC
T ss_pred HHHHHHHHHHHHhCCCCCCcEEEEhHHHHHHHHHHHhHhhhcHHHHHHHHhcccCcccCCceEEeCCHHHHHHHhcCCCC
Confidence 99999998877 4999999887644322 1110 0001 1 0 0 1 123
Q ss_pred eEEEecCh-----H---HHHhcCCCceEEEEeccceeecccCc------eee----------eccCCeeEEEEe-ecCCC
Q 001045 275 DVHVVGWN-----E---IMVERGYDKVVGFVPTGWTYEVKRNK------FAV----------RSKDAFEIHLVP-YSEHS 329 (1176)
Q Consensus 275 ~I~v~~~~-----~---~~~~~g~~~~v~i~ptGw~~~~~~~~------~~v----------~~~~~~~v~~i~-~SgHA 329 (1176)
.|++++.+ . .+.....++...++.+||+.....++ ..+ .....+.++.++ |||||
T Consensus 505 ~vIiat~gm~~gg~~~~~l~~~~~~~~~~vi~sg~~~~gt~gr~l~~g~~~i~~~~~~G~~~~v~v~~~v~~i~g~SgHa 584 (640)
T 2xr1_A 505 CVILATSGMMNGGPVMEYFKAFAEDPRNTLVFVGYQADGTIGRRIQKGWKEIPMTGKNGSTEMLKMNMEVQVVDGFSGHS 584 (640)
T ss_dssp CEEEESCTTSSSSHHHHHHHHHSSCTTCEEEECSCCCTTCHHHHHHTTCCC-----------CCCCCSEEEECCCCSCSC
T ss_pred eEEEeCCCccCCChHHHHHHHhhCCCCCEEEEecCCCCCCHHHHHhhccceeeeeccCCCceEEeeeEEEEEEccccccC
Confidence 35554332 1 12222222222334588887654111 111 122456788899 99999
Q ss_pred CHHHHHHHHHHcC--CCEEEEEecCCCCcCchHHHHHHHHHHHHH
Q 001045 330 NYDELREYVKFLK--PKRVIPTVGMDIEKLDSKHANKMRKYFAGL 372 (1176)
Q Consensus 330 s~~EL~~~V~~lr--Pk~VIPvHG~~~e~~~~~E~~~m~k~f~~l 372 (1176)
|++||++|++.++ |++|||||| |++++..+.+.+
T Consensus 585 d~~eL~~~i~~~~~~P~~vi~vHG---------e~~~~~~~a~~~ 620 (640)
T 2xr1_A 585 DRRQLMEYVKRMQPRPERVFTEHG---------DEKACVDLASSV 620 (640)
T ss_dssp CHHHHHHHHHTCBSCCSEEEEESS---------CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhccCCCEEEEECC---------CHHHHHHHHHHH
Confidence 9999999999999 999999999 666655544433
No 17
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A*
Probab=99.97 E-value=5.8e-30 Score=313.18 Aligned_cols=314 Identities=19% Similarity=0.207 Sum_probs=217.7
Q ss_pred CCCCeeE-eCCccEEEecCCc---------------------CCCCccEEEeccCChhhhCCcccCCC-------CceEE
Q 001045 37 TFPPSKH-VPNTRFLIDAFRY---------------------AADFSVSYFLSHFHSDHYTGLSPSWS-------KGIIF 87 (1176)
Q Consensus 37 ~~p~~~~-ipg~~~liD~~~~---------------------~~~~i~avfITHaH~DHiggL~~l~~-------~~pIY 87 (1176)
+.+++.+ ..+..++|||+-. ...++++|||||+|.||+|||++++. ++|||
T Consensus 29 g~n~~li~~~~~~iLID~G~~~~~~~~~g~~~~~p~~~~l~~~~~~Id~I~iTH~H~DHiggl~~L~~~~~~~~~~~pIy 108 (562)
T 3bk2_A 29 GKNITVFRFRDEIFVLDGGLAFPEEGMPGVDLLIPRVDYLIEHRHKIKAWVLTHGHEDHIGGLPFLLPMIFGKESPVPIY 108 (562)
T ss_dssp SCCEEEEEETTEEEEECCCCBCCCTTSTTCCEEEECCHHHHHTGGGEEEEECCCCCHHHHTTHHHHHHHHHCSCCCSEEE
T ss_pred CCCEEEEEECCeEEEEECCCCCCccccccccccccchhhhhcCcccCcEEEECCCChHHhCCHHHHHHhhccccCCceEE
Confidence 4567777 6888999999821 12468999999999999999998642 78999
Q ss_pred eCHHHHHHHHHhhc---cC--CCceEEeCCCceEEECC-EEEEEEecCC-CcCceEEEEEEcCCCCcccEEEEECCCCCc
Q 001045 88 CSEITSRLLSQILN---IN--PKFIYPLPIKIPVLIDG-CEVVLVGANH-CPGAVQFLFKVPGRNGGFERYVHTGDFRFC 160 (1176)
Q Consensus 88 ~s~~T~~ll~~~l~---~~--~~~i~~l~~~~~~~i~~-~~Vt~~~a~H-~pGS~~flie~~~~~G~~~~IlYTGDfr~~ 160 (1176)
|++.|.+++...+. +. ...++++++++++.+++ ++|++++++| +|||++|+|+.++ ++++||||+.+.
T Consensus 109 ~~~~t~~~l~~~l~~~~~~~~~~~~~~v~~g~~~~lg~~~~v~~~~~~H~~~gs~~~~i~~~~-----~~il~tGD~~~~ 183 (562)
T 3bk2_A 109 GARLTLGLLRGKLEEFGLRPGAFNLKEISPDDRIQVGRYFTLDLFRMTHSIPDNSGVVIRTPI-----GTIVHTGDFKLD 183 (562)
T ss_dssp EEHHHHHHHHHHHHHTTCCSTTSEEEEECTTCEEEETTTEEEEEEECCCSSSSCEEEEEEETT-----EEEEECCSCCCC
T ss_pred eCHHHHHHHHHHHHHcCCCcCCceEEEECCCCEEEeCCCEEEEEEECCCCCcccEEEEEEECC-----eEEEEcCCCCCC
Confidence 99999999887653 22 23578899999999999 9999999999 8999999999865 699999999987
Q ss_pred ccccch-----hhhhcc--CCCcEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHHhhhccccCCCeEEEEEeccc--cch
Q 001045 161 KTMLLQ-----PVMNEF--AGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRVGGELNEGLQKRVLFLVATYV--IGK 231 (1176)
Q Consensus 161 ~~~~~~-----~~l~~~--~~vDvLI~EsTy~~~~~~~p~~~e~~~~l~~~i~~~~~~~~~~~~g~vlvli~~~s--lGR 231 (1176)
...... ..+..+ .++|+||+||||+......+++....+.+.+.+++. +++ +++++|+ ++|
T Consensus 184 ~~~~~g~~~d~~~l~~~~~~~~d~Li~EsT~~~~~g~~~~e~~v~~~l~~~~~~~--------~gr--vii~~fas~~~r 253 (562)
T 3bk2_A 184 PTPIDGKVSHLAKVAQAGAEGVLLLIADATNAERPGYTPSEMEIAKELDRVIGRA--------PGR--VFVTTFASHIHR 253 (562)
T ss_dssp SSCTTSCCCCCHHHHHHHHHCCSEEEEECTTTTCCSCCCCHHHHHHHHHHHHHHC--------SSC--EEEECCTTCHHH
T ss_pred CCCCCCCcccHHHHHHhhccCCCEEEecccCCCCCCCCChHHHHHHHHHHHHHhC--------CCE--EEEEEccccchH
Confidence 654321 112222 489999999999975545566555545555554432 467 6789999 999
Q ss_pred HHHHHHHHHHcCCcEEEccchHH----HHHHhCCCC-CC-ccccC-----CCCC-eEEEecCh-H------HHHhc----
Q 001045 232 EKILIEIFKKCGRKVCVDSRKME----VLRVLGYGD-SG-VFTED-----ESET-DVHVVGWN-E------IMVER---- 288 (1176)
Q Consensus 232 ~q~ll~ia~~~g~~I~vdg~~~~----il~~lg~~~-~~-~~t~d-----~~~~-~I~v~~~~-~------~~~~~---- 288 (1176)
.|++++++++++++|++.++.+. +++.+++.. .. ++..+ +... .|.+++.+ + -+...
T Consensus 254 ~q~il~~a~~~~r~V~v~g~s~~~~~~~~~~~g~l~~~~~~i~~~~~~~~~~~~~vi~~tg~~ge~~~~l~ria~~~h~~ 333 (562)
T 3bk2_A 254 IQSVIWAAEKYGRKVAMEGRSMLKFSRIALELGYLKVKDRLYTLEEVKDLPDHQVLILATGSQGQPMSVLHRLAFEGHAK 333 (562)
T ss_dssp HHHHHHHHHHTTCEEEEECHHHHHHHHHHHHTTSCCCSSCCBCTGGGTTSCGGGEEEEECCTTSCSHHHHHHHHTTCCSS
T ss_pred HHHHHHHHHHhCCEEEEEChHHHHHHHHHHhcCcccCCCCccCHHHHhcCCCCCEEEEEcCCCchhHHHHHhhhhccccc
Confidence 99999999999999999877653 445566542 11 11111 1112 23334433 1 11110
Q ss_pred -CCCceEEEEeccceeecccCcee-e---eccCCeeE-----EEEeecCCCCHHHHHHHHHHcCCCEEEEEecCCCCcCc
Q 001045 289 -GYDKVVGFVPTGWTYEVKRNKFA-V---RSKDAFEI-----HLVPYSEHSNYDELREYVKFLKPKRVIPTVGMDIEKLD 358 (1176)
Q Consensus 289 -g~~~~v~i~ptGw~~~~~~~~~~-v---~~~~~~~v-----~~i~~SgHAs~~EL~~~V~~lrPk~VIPvHG~~~e~~~ 358 (1176)
...+...++.+||......+... + ....++++ ..+|+||||+++||+.|++.++|++||||||
T Consensus 334 ~~~~~~~~vi~s~~~~~G~~~~~~~~~~~l~~~g~~v~~~~~~~i~~SgHa~~~eL~~~i~~~~Pk~vipvHG------- 406 (562)
T 3bk2_A 334 MAIKPGDTVILSSSPIPGNEEAVNRVINRLYALGAYVLYPPTYKVHASGHASQEELKLILNLTTPRFFLPWHG------- 406 (562)
T ss_dssp CCCCTTCEEEECSCCCTTCHHHHHHHHHHHHHTTCEEECTTTSSSCCCSSCCHHHHHHHHHHHCCSEEEEESB-------
T ss_pred ccCCCCCEEEEECCCCCCCeEehhhhcCceeeCCCEEEEccCCceEEeCCCCHHHHHHHHHhcCCCEEEEEcC-------
Confidence 01112233457776654321110 0 11223333 2479999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHH
Q 001045 359 SKHANKMRKYFAGLVDE 375 (1176)
Q Consensus 359 ~~E~~~m~k~f~~l~~~ 375 (1176)
|+++|.++. .+..+
T Consensus 407 --e~~~~~~~~-~~~~~ 420 (562)
T 3bk2_A 407 --EVRHQMNFK-WLAES 420 (562)
T ss_dssp --CHHHHHHHH-HHHHT
T ss_pred --CHHHHHHHH-HHHHH
Confidence 777776654 44443
No 18
>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.00A {Enterococcus faecalis} SCOP: d.157.1.10
Probab=99.97 E-value=1.8e-29 Score=299.18 Aligned_cols=304 Identities=14% Similarity=0.126 Sum_probs=201.4
Q ss_pred cCCCCCCCCCCCCCCCCCeeE-eCCccEEEecCCcC-----------------------------------------CCC
Q 001045 23 SSPPDSLIFPPIPRTFPPSKH-VPNTRFLIDAFRYA-----------------------------------------ADF 60 (1176)
Q Consensus 23 ~~l~s~~~~p~~~r~~p~~~~-ipg~~~liD~~~~~-----------------------------------------~~~ 60 (1176)
..||+++.++ .+++.+ ..+..++||||-.. ..+
T Consensus 10 ~~lG~~~~~g-----~n~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~~~ 84 (429)
T 2az4_A 10 TFHSGILTIG-----GTVIEVAYKDAHIFFDFGTEFRPELDLPDDHIETLINNRLVPELKDLYDPRLGYEYHGAEDKDYQ 84 (429)
T ss_dssp EEEECTTSSS-----CCEEEEEETTEEEEECCCCCCCTTCCCSCCCHHHHHHTTSSCCCSSCBCGGGCCCCCSSCCCCCS
T ss_pred EEeeCCCccC-----CeEEEEEECCeEEEEecCCCCCcccCCCcchhhhccCCcccCCchhhhcccccccchhhhhcccc
Confidence 3456555443 356777 68889999997321 146
Q ss_pred ccEEEeccCChhhhCCcccCCCCceEEeCHHHHHHHHHhhcc-------------CCCceEEeCCCceEEECCEEEEEEe
Q 001045 61 SVSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLLSQILNI-------------NPKFIYPLPIKIPVLIDGCEVVLVG 127 (1176)
Q Consensus 61 i~avfITHaH~DHiggL~~l~~~~pIY~s~~T~~ll~~~l~~-------------~~~~i~~l~~~~~~~i~~~~Vt~~~ 127 (1176)
+++|||||+|.||++|++.++.++|||+++.|..++...... ....++.++.++++.+++++|++++
T Consensus 85 i~~v~lTH~H~DHiggl~~l~~~~~iy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~v~~~~ 164 (429)
T 2az4_A 85 HTAVFLSHAHLDHSRMINYLDPAVPLYTLKETKMILNSLNRKGDFLIPSPFEEKNFTREMIGLNKNDVIKVGEISVEIVP 164 (429)
T ss_dssp EEEEECSCSCHHHHTTGGGBCTTSCEEEEHHHHHHHHHHTTTSCSSCCCTTSCTTCCCCCEEECTTCEEEETTEEEEEEE
T ss_pred CCEEEECCchHHHhCcHhHhcCCCCEEECHHHHHHHHHHHHhCccccccccccccccceEEEeCCCCeEEECCEEEEEEE
Confidence 799999999999999999988889999999999998865431 1234678899999999999999999
Q ss_pred cCC-CcCceEEEEEEcCCCCcccEEEEECCCCCcccccc--hhhhhccCCCcEEEEeCCCCCCC--------CCCCChHH
Q 001045 128 ANH-CPGAVQFLFKVPGRNGGFERYVHTGDFRFCKTMLL--QPVMNEFAGCDAVFLDTTYCNPK--------FLFPLQEE 196 (1176)
Q Consensus 128 a~H-~pGS~~flie~~~~~G~~~~IlYTGDfr~~~~~~~--~~~l~~~~~vDvLI~EsTy~~~~--------~~~p~~~e 196 (1176)
++| +||+++|+|+.++ ++++||||+++.+.... ........++|+||+||||+... ..+++.++
T Consensus 165 ~~H~~~gs~~~~i~~~~-----~~i~~tGD~~~~~~~~~~~~~~~~~~~~~d~Li~Est~~~~~~~~~~~~~~~~~s~~~ 239 (429)
T 2az4_A 165 VDHDAYGASALLIRTPD-----HFITYTGDLRLHGHNREETLAFCEKAKHTELLMMEGVSISFPEREPDPAQIAVVSEED 239 (429)
T ss_dssp CCCSSTTCEEEEEEETT-----EEEEECCSCCSSSTTHHHHHHHHHHHTTCSEEEEECCGGGSCCCCCCTTBCCCCSHHH
T ss_pred CCCCChhhEEEEEEeCC-----cEEEECCCcccCCCchHHHHHHHHhccCCCEEEECCCCcCcccccccccCCCCCCHHH
Confidence 999 9999999999864 69999999988665321 11222226999999999998721 11555555
Q ss_pred HHHHHHHHHHHHhhhccccCCCeEEEEEeccc--cchHHHHHHHHHHcCCcEEEccchHHHHHHh-CCC----C-CC---
Q 001045 197 SVEYVVNVVNRVGGELNEGLQKRVLFLVATYV--IGKEKILIEIFKKCGRKVCVDSRKMEVLRVL-GYG----D-SG--- 265 (1176)
Q Consensus 197 ~~~~l~~~i~~~~~~~~~~~~g~vlvli~~~s--lGR~q~ll~ia~~~g~~I~vdg~~~~il~~l-g~~----~-~~--- 265 (1176)
..+.+.+++++. .+++ +++++++ ++|.|++ +++.|+||+++|+.+..+..+ ... . ..
T Consensus 240 ~~~~i~~~~~~~--------~~rl-il~h~~~~~~~r~~~~---a~~~gr~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 307 (429)
T 2az4_A 240 LVQHLVRLELEN--------PNRQ-ITFNGYPANVERFAKI---IEKSPRTVVLEANMAALLLEVFGIEVRYYYAESGKI 307 (429)
T ss_dssp HHHHHHHHHHTC--------SSSC-EEEEECTTCHHHHHHH---HHHCSSEEEEEHHHHHHHHHHHCCCCEEECSSSSCC
T ss_pred HHHHHHHHHHhC--------CCcE-EEEEeccchHHHHHHH---HHHhCCEEEEEChhHHHHHhhccccCeeEecccccc
Confidence 555555444322 3442 3334343 5666665 789999999999988554443 211 0 00
Q ss_pred -------ccccC----CCCCeEEEecChHHHHhcCCCceEEEEeccceeecccC-cee--e--eccCCeeEEEEeecCCC
Q 001045 266 -------VFTED----ESETDVHVVGWNEIMVERGYDKVVGFVPTGWTYEVKRN-KFA--V--RSKDAFEIHLVPYSEHS 329 (1176)
Q Consensus 266 -------~~t~d----~~~~~I~v~~~~~~~~~~g~~~~v~i~ptGw~~~~~~~-~~~--v--~~~~~~~v~~i~~SgHA 329 (1176)
+++.+ .....|.+. .+. +..-.....+. .++|....... ... + ....+++++.+|+||||
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~ii~~-~~~-~~~l~~~~~vi--~s~~~~~g~~~~~~~~~~~~~~~~~~~v~~i~~SgHa 383 (429)
T 2az4_A 308 PELNPALEIPYDTLLKDKTDYLWQV-VNQ-FDNLQEGSLYI--HSDAQPLGDFDPQYRVFLDLLAKKDITFVRLACSGHA 383 (429)
T ss_dssp TTSCGGGBCCHHHHHHCSSSEEEEC-CSC-GGGSCTTCEEE--EESCSSCSTTSHHHHHHHHHHHHTTCEEEECCCCSSC
T ss_pred cccCccceecHHHHhhCCCcEEEEe-cCc-HHhhCCCCEEE--EeCCCCCcccchHHHHHHHHHHhCCCEEEEEeecCCC
Confidence 11100 011123322 111 00111122333 35554332211 000 0 13456778889999999
Q ss_pred CHHHHHHHHHHcCCCEEEEEecC
Q 001045 330 NYDELREYVKFLKPKRVIPTVGM 352 (1176)
Q Consensus 330 s~~EL~~~V~~lrPk~VIPvHG~ 352 (1176)
+++||++|++.++|++||||||.
T Consensus 384 ~~~eL~~~~~~~~Pk~~ipvHGe 406 (429)
T 2az4_A 384 IPEDLDKIIALIEPQVLVPIHTL 406 (429)
T ss_dssp CHHHHHHHHHHHCCSEEEEESCS
T ss_pred CHHHHHHHHHhhCCCEEEECCCC
Confidence 99999999999999999999993
No 19
>1fvi_A Chlorella virus DNA ligase-adenylate; adenylated DNA ligase; HET: AMP; 2.00A {Chlorella virus} SCOP: b.40.4.6 d.142.2.1 PDB: 2q2t_A* 2q2u_A* 1p8l_A*
Probab=99.96 E-value=1.6e-29 Score=285.25 Aligned_cols=172 Identities=16% Similarity=0.199 Sum_probs=142.9
Q ss_pred CccCCCCcccCChhHHHHhccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCCCCchhHHHHHHhhcCCCCCCeEE
Q 001045 957 PIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFIL 1036 (1176)
Q Consensus 957 Pi~PMLA~~~~~~~~~~~~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~~ypdl~~~l~~~~~~~~~~~IL 1036 (1176)
+++||||++++...+ ...+|++|+||||+|||+ +| ++|||+|+++|. |+|.+.+... . ++||
T Consensus 2 ~~~PmLA~~~~~~~~-----~~~~~~~E~K~DG~R~~~----~g--~l~SR~g~~~t~--p~l~~~~~~~----~-~~iL 63 (297)
T 1fvi_A 2 ITKPLLAATLENIED-----VQFPCLATPKIAGIRSVK----QT--QMLSRTFKPIRN--SVMNRLLTEL----L-PEGS 63 (297)
T ss_dssp CSSCCBCEECCCGGG-----CCSSEEEEECCCSEEEEE----SS--SEECTTSCBCSC--HHHHHHHHHH----S-CTTE
T ss_pred CcCceeCCccCcCcC-----CCCcEEEEeeEeeeeEEe----cC--EEECCCCcccCc--HHHHHHHHhc----C-CeeE
Confidence 689999999886532 156899999999999998 34 999999999996 8988887774 2 8999
Q ss_pred EEEEEEEecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhcccCCC-
Q 001045 1037 DAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMG- 1115 (1176)
Q Consensus 1037 DGElVa~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~~~~- 1115 (1176)
|||+|++. .+|+.|++|.+..... ...+++|++|||||+| ++.||.+||++|++++......
T Consensus 64 DGElv~~~-------~~F~~l~~~~~~~~~~------~~~~~~~~vFDll~l~----~~~pl~eRr~~L~~~~~~~~~~~ 126 (297)
T 1fvi_A 64 DGEISIEG-------ATFQDTTSAVMTGHKM------YNAKFSYYWFDYVTDD----PLKKYIDRVEDMKNYITVHPHIL 126 (297)
T ss_dssp EEEEECTT-------SCHHHHHHHHHSCC----------CCEEEEEEEECSSC----TTSCHHHHHHHHHHHHHHCGGGG
T ss_pred EEEEEECC-------CCHHHHHHHhccCCCC------CccceEEEEEeccCCC----CCCCHHHHHHHHHHHHhhcCCcc
Confidence 99999931 4799999997754321 3568999999999998 7899999999999999322222
Q ss_pred ---cEEEeE--EEEEcCCCCCCccccCHHHHHHHHHHHHhCCCceEEEecCCCCCCcccCCCCC----CC
Q 001045 1116 ---YFQYAK--EMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSD----SW 1176 (1176)
Q Consensus 1116 ---~i~~~~--~~~v~~~~~~~~~~~~~eei~~~~~~ai~~g~EGlmvK~ld~~s~Y~pGkRs~----~W 1176 (1176)
.+.+++ ++.+ .+.++++++|+++++.|+||||+|+++ |+|+|| |+. +|
T Consensus 127 ~~~~i~~~~~~~~~~----------~~~~~~~~~~~~~~~~g~EGlv~K~~d--s~Y~~G-Rs~~~~g~w 183 (297)
T 1fvi_A 127 EHAQVKIIPLIPVEI----------NNITELLQYERDVLSKGFEGVMIRKPD--GKYKFG-RSTLKEGIL 183 (297)
T ss_dssp GCSSEEEEECCCEEE----------CSHHHHHHHHHHHHHTTCCSEEEECTT--CCCCSS-BCCTTTTSS
T ss_pred ccceEEEcCcceEec----------CCHHHHHHHHHHHHHCCCcEEEEECCC--CCcCCC-CCCCCCCCe
Confidence 788888 7765 468999999999999999999999988 999999 988 78
No 20
>3vnn_A DNA ligase 4; non-homologous END joining, DNA repair, XRCC4; HET: DNA; 2.90A {Homo sapiens}
Probab=99.95 E-value=3.7e-29 Score=251.40 Aligned_cols=132 Identities=28% Similarity=0.438 Sum_probs=102.4
Q ss_pred EEEEEecceeEEEEEEeeCCeEEEEcCCCccCCCCchhHHH------HHHhhcCCCCCCeEEEEEEEEEecCCCCcccCh
Q 001045 981 FTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLIS------IINEFCKPAAGTFILDAEVVAIDRKNGCKIMSF 1054 (1176)
Q Consensus 981 f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~~ypdl~~------~l~~~~~~~~~~~ILDGElVa~d~~~g~~~~pF 1054 (1176)
|++|+||||+|||+|+ .+|+|++|||||+++|.+||++.. .+..++.....+||||||||+||+.++ +|
T Consensus 1 f~~E~K~DG~R~q~~~-~g~~v~l~SR~g~d~t~~fPel~~~~~l~~~i~~~~~~~~~~~iLDGEiv~~d~~~~----~f 75 (139)
T 3vnn_A 1 FYIETKLDGERMQMHK-DGDVYKYFSRNGYNYTDQFGASPTEGSLTPFIHNAFKADIQICILDGEMMAYNPNTQ----TF 75 (139)
T ss_dssp CCCCCCCCCEEEEEEE-ETTEEEEECSSCCBCTTTSCSSTTC--CCSGGGSCCCTTCCEEEEEEEEEEEETTTT----EE
T ss_pred CEEEEEECeEEEEEEE-ECCEEEEEeCCCCCchhhccchhhhcchhHHHHHHHhccCCceEeeeEEEEecCCCC----CH
Confidence 6899999999999999 589999999999999999999764 355555556789999999999997643 45
Q ss_pred HHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhcccCCCcEEEeEE
Q 001045 1055 QELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKE 1122 (1176)
Q Consensus 1055 q~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~~~~~i~~~~~ 1122 (1176)
..++++..... .......++||++|||||+||++|+++||.+||++|++++ .+.+++++++++
T Consensus 76 ~~~~~~~~~~~----~~~~~~~~~~~~vFDlL~l~G~~L~~~pl~eRr~~L~~l~-~~~~~~~~~~~~ 138 (139)
T 3vnn_A 76 MQKGTKFDIKR----MVEDSDLQTCYCVFDVLMVNNKKLGHETLRKRYEILSSIF-TPIPGRIEIVQK 138 (139)
T ss_dssp CCC-----------------CCEEEEEEEEEEEETTEECSSSCHHHHHHHHHHHC-CCBTTBSCBCCC
T ss_pred HHHHhhhhhhh----hhhccCceEEEEEEEEEeECCcCcccCCHHHHHHHHHHHh-hcCCCeEEEEec
Confidence 44444422110 1123357899999999999999999999999999999999 666778877654
No 21
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10
Probab=99.88 E-value=2.9e-22 Score=250.34 Aligned_cols=208 Identities=15% Similarity=0.110 Sum_probs=163.9
Q ss_pred CCCCCeeE-eCCccEEEecCCcC---------------CCCccEEEeccCChhhhCCcccCC--------CCceEEeCHH
Q 001045 36 RTFPPSKH-VPNTRFLIDAFRYA---------------ADFSVSYFLSHFHSDHYTGLSPSW--------SKGIIFCSEI 91 (1176)
Q Consensus 36 r~~p~~~~-ipg~~~liD~~~~~---------------~~~i~avfITHaH~DHiggL~~l~--------~~~pIY~s~~ 91 (1176)
...+|+.+ ..+..+||||+-.. .+.|++|||||+|.||+|||+++. .++||||++.
T Consensus 13 v~~n~~LIe~~~~~ILID~G~~~~~~~~~~~l~~L~~~~~~IdaVlLTH~H~DHiGgLp~L~~~~~~g~~~~~pIY~t~~ 92 (717)
T 2i7x_A 13 GTTVGSVVRFDNVTLLIDPGWNPSKVSYEQCIKYWEKVIPEIDVIILSQPTIECLGAHSLLYYNFTSHFISRIQVYATLP 92 (717)
T ss_dssp SSCCCEEEEETTEEEEECCCCCTTTSCHHHHHHHHHTTGGGCCEEECCCSSHHHHTTHHHHHHHSHHHHHHTCEEEEEHH
T ss_pred CCCCEEEEEECCeEEEEeCCCCcccchhhhHHHHHHhcCCCCCEEEECCCChHHHCCHHHHHHhhhhcccCCceEEecch
Confidence 46788888 78899999998332 136899999999999999999865 2689999999
Q ss_pred HHHHHHHhhc-------cCC----------------CceEEeCCCceEEE----CCEEEEEEecCCCcCceEEEEEEcCC
Q 001045 92 TSRLLSQILN-------INP----------------KFIYPLPIKIPVLI----DGCEVVLVGANHCPGAVQFLFKVPGR 144 (1176)
Q Consensus 92 T~~ll~~~l~-------~~~----------------~~i~~l~~~~~~~i----~~~~Vt~~~a~H~pGS~~flie~~~~ 144 (1176)
|..++...+. ... ..++++.+++++.+ ++++|+++++||++|+++|.|+.++
T Consensus 93 t~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~l~~ge~i~l~~~~ggi~V~~~~aGHs~Gs~~~~I~~~~- 171 (717)
T 2i7x_A 93 VINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEISFDHIVPLKYSQLVDLRSRYDGLTLLAYNAGVCPGGSIWCISTYS- 171 (717)
T ss_dssp HHHHHHHHHHHHHHHTTSSSSBTTCCSCHHHHHHHHHTSEEECTTCCEEETTTTTTEEEEEEECSSSTTCEEEEEECSS-
T ss_pred hHHHHHHHHHHHHHhhccccccccccccHHHHHhhhhceEEecCCCEEEEeecCCCEEEEEECCCCCCCcEEEEEEeCC-
Confidence 9987765431 110 13678999999999 8999999999999999999999854
Q ss_pred CCcccEEEEECCCCCcccccchhh---------hhccCCCcEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHHhhhcccc
Q 001045 145 NGGFERYVHTGDFRFCKTMLLQPV---------MNEFAGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRVGGELNEG 215 (1176)
Q Consensus 145 ~G~~~~IlYTGDfr~~~~~~~~~~---------l~~~~~vDvLI~EsTy~~~~~~~p~~~e~~~~l~~~i~~~~~~~~~~ 215 (1176)
++|+||||++........+. +..+.++|+||+||||+.+. +++. +....+.+.+.+++..
T Consensus 172 ----~~IvytGD~~~~~~~~l~~~~~L~~~g~~l~~l~~~D~LI~EsTy~~~~--h~~~-~~~~~l~~~i~~~l~~---- 240 (717)
T 2i7x_A 172 ----EKLVYAKRWNHTRDNILNAASILDATGKPLSTLMRPSAIITTLDRFGSS--QPFK-KRSKIFKDTLKKGLSS---- 240 (717)
T ss_dssp ----CEEEECSSCCSSCCSSCCCCTTBCTTSCBCSTTSSCSEEEECCSCCCCS--SCHH-HHHHHHHHHHHHHTST----
T ss_pred ----CEEEEECCCCCCcccccCccccccccchhHHhccCCcEEEEcCCCCCCC--CCCH-HHHHHHHHHHHHHHhC----
Confidence 59999999998765443221 12346899999999999853 5554 4566888888887655
Q ss_pred CCCeEEEEEeccccchHHHHHHHHHHcC-----------CcEEEccchH-HHHHH
Q 001045 216 LQKRVLFLVATYVIGKEKILIEIFKKCG-----------RKVCVDSRKM-EVLRV 258 (1176)
Q Consensus 216 ~~g~vlvli~~~slGR~q~ll~ia~~~g-----------~~I~vdg~~~-~il~~ 258 (1176)
+|+ |+||+|+.||.|+++.++.+++ +||+++++.+ ++++.
T Consensus 241 -~G~--VlIp~fa~gR~qell~~l~~~~~~~~~~~~~~~~pI~l~g~~a~~~~~i 292 (717)
T 2i7x_A 241 -DGS--VIIPVDMSGKFLDLFTQVHELLFESTKINAHTQVPVLILSYARGRTLTY 292 (717)
T ss_dssp -TCE--EEEEECTTTHHHHHHHHHHHHHTTC-------CCCEEEECTTTTHHHHH
T ss_pred -CCe--EEEEeccchHHHHHHHHHHHhhhhhhccccCCCceEEEECHHHHHHHHH
Confidence 678 7899999999999999886653 7999998876 54443
No 22
>1ckm_A MRNA capping enzyme; nucleotidyltransferase; HET: GTP; 2.50A {Paramecium bursaria chlorella virus 1} SCOP: b.40.4.6 d.142.2.3 PDB: 1ckn_A* 1cko_A* 1ckn_B*
Probab=99.87 E-value=9.2e-23 Score=232.96 Aligned_cols=148 Identities=15% Similarity=0.148 Sum_probs=113.5
Q ss_pred ccCceEEEEEecceeEEEEEEe---eCCeEEEEcCCCccCCCCchhHHHHHHhhcCCCCCCeEEEEEEEEEecCCCCccc
Q 001045 976 FQNKAFTCEYKYDGQRAQIHKL---VDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIM 1052 (1176)
Q Consensus 976 ~~~~~f~~E~KyDGeR~QiH~~---~~g~V~ifSR~g~d~T~~ypdl~~~l~~~~~~~~~~~ILDGElVa~d~~~g~~~~ 1052 (1176)
+...+|++|+||||+|+|+|++ ++|.+.+|||+++++|..||++.. ....++|||||||++.. ++
T Consensus 72 L~~~~y~ve~K~DG~R~ll~~~~~~g~g~v~L~sR~~~~~t~~fp~~~~-------~~~~~~vLDGElv~~~~-~~---- 139 (330)
T 1ckm_A 72 LKQNKYVVSEKTDGIRFMMFFTRVFGFKVCTIIDRAMTVYLLPFKNIPR-------VLFQGSIFDGELCVDIV-EK---- 139 (330)
T ss_dssp HHHSCEEEEEEECSEEEEEEEEEETTEEEEEEECTTCCEEECCCSCCCT-------TGGGCEEEEEEEEEETT-TT----
T ss_pred CCcCCEEEEECcceEEEEEEEEecCCCCEEEEEeCCCCEEeccChhhhh-------ccCCCeeEEEEEEEEcC-CC----
Confidence 4456899999999999999994 247899999999999999998732 13468999999999531 00
Q ss_pred ChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhccc---CCC--cEEEeEEEEEcC
Q 001045 1053 SFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDE---KMG--YFQYAKEMTVEG 1127 (1176)
Q Consensus 1053 pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~---~~~--~i~~~~~~~v~~ 1127 (1176)
.++|++||||++||++|+++||.+||++|++++... ... .+.+.+...
T Consensus 140 ------------------------~~~f~vFDlL~~~G~dl~~~pl~eRr~~L~~~l~~~~~~~~~~~~i~~~~~~~--- 192 (330)
T 1ckm_A 140 ------------------------KFAFVLFDAVVVSGVTVSQMDLASRFFAMKRSLKEFKNVPEDPAILRYKEWIP--- 192 (330)
T ss_dssp ------------------------EEEEEEEEEEEETTEECTTSCHHHHHHHHHHHHTTCCCCTTSSSEEEECCCEE---
T ss_pred ------------------------eEEEEEEeeeeeCCcccccCCHHHHHHHHHHHHhhhcccCCCCeEEEEEEEEe---
Confidence 178999999999999999999999999999999311 111 233333222
Q ss_pred CCCCCccccCHHHHHHHH---HHHHhC--CCceEEEecCCCCCCcccCCCCCCC
Q 001045 1128 DDNCLTSDVSLSKINNFL---EEALHS--SCEGIIVKSLDVDAGYSPSKRSDSW 1176 (1176)
Q Consensus 1128 ~~~~~~~~~~~eei~~~~---~~ai~~--g~EGlmvK~ld~~s~Y~pGkRs~~W 1176 (1176)
. +++++| ..++.+ |.||||+|+.+ |+|.||+ +.+|
T Consensus 193 ----------~-~~~~~~~~~~~~~~~~yg~EGlI~K~~d--spY~~Gr-~~~~ 232 (330)
T 1ckm_A 193 ----------L-EHPTIIKDHLKKANAIYHTDGLIIMSVD--EPVIYGR-NFNL 232 (330)
T ss_dssp ----------T-TCHHHHHHHHHHHHHHSCEEEEEEEESS--SCCCCEE-EEEE
T ss_pred ----------h-hHHHHHHHHHHHHhccCCCceEEEeeCC--CcccCCC-ccCe
Confidence 2 344555 467778 99999999998 9999994 4544
No 23
>1p16_A GTP--RNA, mRNA capping enzyme alpha subunit; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans} SCOP: b.40.4.6 d.142.2.3
Probab=99.85 E-value=1.7e-22 Score=236.60 Aligned_cols=160 Identities=17% Similarity=0.225 Sum_probs=117.7
Q ss_pred HhccCceEEEEEecceeEEEEEEe----eCCeEEEEcCCCccCC---CCchhHHHHHHhhcCCCCCCeEEEEEEEEEecC
Q 001045 974 KLFQNKAFTCEYKYDGQRAQIHKL----VDGTVRIFSRNGDETT---SRFPDLISIINEFCKPAAGTFILDAEVVAIDRK 1046 (1176)
Q Consensus 974 ~~~~~~~f~~E~KyDGeR~QiH~~----~~g~V~ifSR~g~d~T---~~ypdl~~~l~~~~~~~~~~~ILDGElVa~d~~ 1046 (1176)
+.+...+|++|+||||+|+|+|+. .++.+.+|||++++++ ..||++.+..+.. .....++|||||||+++..
T Consensus 55 ~~l~~~~~~ve~K~DG~R~ll~~~~~~~~g~~v~L~sR~~~~~~i~~~~FP~~~~~~~~~-~~~~~~~vLDGElV~~~~~ 133 (395)
T 1p16_A 55 ETLMQKDYFVCEKTDGLRCLLFLINDPDKGEGVFLVTRENDYYFIPNIHFPLSVNETREK-PTYHHGTLLDGELVLENRN 133 (395)
T ss_dssp THHHHSCEEEEEEECSEEEEEEEEEETTTEEEEEEEETTCCEEECCSCCCCSCTTCCSSS-CCCCSSEEEEEEEEEECCS
T ss_pred HhhCcCCEEEEECccceEEEEEEeecccCCCEEEEEeCCCceEEeccccCCcccccccch-hccCCcceeeeEEEEeccC
Confidence 445557899999999999999993 2467999999999965 5899987654210 1235689999999997531
Q ss_pred CCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhcccC-------------
Q 001045 1047 NGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEK------------- 1113 (1176)
Q Consensus 1047 ~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~~------------- 1113 (1176)
. .+.+++|++||||++||++|+++||.+||++|++++..+.
T Consensus 134 ~--------------------------~~~~~~f~~FDlL~~~G~dl~~~pl~eR~~~L~~~i~~~~~~~~~~~~~~~~~ 187 (395)
T 1p16_A 134 V--------------------------SEPVLRYVIFDALAIHGKCIIDRPLPKRLGYITENVMKPFDNFKKHNPDIVNS 187 (395)
T ss_dssp S--------------------------SCCEEEEEEEEEEEETTEECTTSCHHHHHHHHHHHTHHHHHHHHHHCHHHHSC
T ss_pred C--------------------------CcceeEEEEEEEEEECCeEcccCCHHHHHHHHHHHhhcccHhhhhcCcccccc
Confidence 0 1246899999999999999999999999999999652210
Q ss_pred ---CCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHH--HHhCCCceEEEecCCCCCCcccCCCCCCC
Q 001045 1114 ---MGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEE--ALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176 (1176)
Q Consensus 1114 ---~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~--ai~~g~EGlmvK~ld~~s~Y~pGkRs~~W 1176 (1176)
+-.+...... ....++++|+. ++..|.||||+|..+ |+|.||++ ..|
T Consensus 188 ~~~pf~v~~~~~~-------------~~~~~~~~~~~~~~~~~g~EGlI~K~~d--s~Y~~Gr~-~~w 239 (395)
T 1p16_A 188 PEFPFKVGFKTML-------------TSYHADDVLSKMDKLFHASDGLIYTCAE--TPYVFGTD-QTL 239 (395)
T ss_dssp TTSCCEEEECCCE-------------EGGGTHHHHTTGGGCSSCEEEEEEEESS--SCCCSEEE-EEE
T ss_pred ccCceEEEEecch-------------hHHHHHHHHHHHHhcCCCCCeEEEEeCC--CCcCCCCc-cce
Confidence 0012222222 23345667765 346899999999998 99999955 455
No 24
>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9
Probab=99.79 E-value=4.8e-19 Score=196.17 Aligned_cols=209 Identities=11% Similarity=0.031 Sum_probs=152.2
Q ss_pred ccCCCCCCCCCCCCCCCCCeeE-eCCccEEEecCCc---------CCCCccEEEeccCChhhhCCcccCC----------
Q 001045 22 QSSPPDSLIFPPIPRTFPPSKH-VPNTRFLIDAFRY---------AADFSVSYFLSHFHSDHYTGLSPSW---------- 81 (1176)
Q Consensus 22 ~~~l~s~~~~p~~~r~~p~~~~-ipg~~~liD~~~~---------~~~~i~avfITHaH~DHiggL~~l~---------- 81 (1176)
+..||+|+++|...+..+++.+ .++..++||++.. ...++++|||||.|.||++|++.+.
T Consensus 27 i~~LG~g~~~p~~~~~~~~~li~~~~~~iLiD~G~~~~~~l~~~~~~~~i~~v~iTH~H~DH~~gl~~l~~~~~~~~~~~ 106 (268)
T 1zkp_A 27 MTVVGFWGGFPEAGEATSGYLFEHDGFRLLVDCGSGVLAQLQKYITPSDIDAVVLSHYHHDHVADIGVLQYARLITSATK 106 (268)
T ss_dssp EEEEECBSSSCCTTCCBSEEEEEETTEEEEECCCTTHHHHHTTTCCGGGCCEEECSCCCHHHHTTHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCcCCCCCCccEEEEEECCcEEEEECCHHHHHHHHHhCCcccCCEEEEecCCchhhCCHHHHHHHHHhccccc
Confidence 4458899999999999999988 6888999999831 2357999999999999999997532
Q ss_pred ---CCceEEeCHHHHHHHHHhhccCCCceEEeCCCceEEECCEEEEEEecCCCcCceEEEEEEcCCCCcccEEEEECCCC
Q 001045 82 ---SKGIIFCSEITSRLLSQILNINPKFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFR 158 (1176)
Q Consensus 82 ---~~~pIY~s~~T~~ll~~~l~~~~~~i~~l~~~~~~~i~~~~Vt~~~a~H~pGS~~flie~~~~~G~~~~IlYTGDfr 158 (1176)
...+||+++.+.+.+....-.....+..+..++.+.+++++|+++++.|.+|+++|+|+.++ ++++||||+.
T Consensus 107 ~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~g~~~v~~~~~~H~~~~~~~~i~~~~-----~~i~~~GD~~ 181 (268)
T 1zkp_A 107 GQLPELPIYGHTFDENGFHSLTHEPHTKGIPYNPEETLQIGPFSISFLKTVHPVTCFAMRITAGN-----DIVVYSADSS 181 (268)
T ss_dssp CCCCCEEEEECSSSHHHHHTTCBTTTEEEEECCTTSCEEETTEEEEEEECCSSSCCEEEEEEETT-----EEEEECCSCC
T ss_pred CCCCceEEEeCccHHHHHHhcccCCccceEEecCCCeEEECCEEEEEEECCCCCCceEEEEEECC-----eEEEEeCCCC
Confidence 25799999999988875421112246678889999999999999999999999999999754 6999999998
Q ss_pred CcccccchhhhhccCCCcEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHHhhhccccCCCeEEEEEeccc-cchHHHHHH
Q 001045 159 FCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRVGGELNEGLQKRVLFLVATYV-IGKEKILIE 237 (1176)
Q Consensus 159 ~~~~~~~~~~l~~~~~vDvLI~EsTy~~~~~~~p~~~e~~~~l~~~i~~~~~~~~~~~~g~vlvli~~~s-lGR~q~ll~ 237 (1176)
+.+.. .....++|+||+|+||.......+..+...+++.+.+++. +.+.+++++... ..+.+.+.+
T Consensus 182 ~~~~~-----~~~~~~~d~li~e~~~~~~~~~~~~~H~~~~~a~~~~~~~--------~~~~lil~H~~~~~~~~~~~~~ 248 (268)
T 1zkp_A 182 YIPEF-----IPFTKDADLFICECNMYAHQEAAKAGHMNSTEVASIAKDA--------NVKELLLTHLPHTGNPADLVTE 248 (268)
T ss_dssp CCTTH-----HHHHTTCSEEEEECCBCTTSCCGGGTCCBHHHHHHHHHHT--------TCSEEEEESBCSSSCTHHHHHH
T ss_pred CCHHH-----HHHHcCCCEEEEECCCCccccccCCCCCCHHHHHHHHHHc--------CCCEEEEECCCCCCChHHHHHH
Confidence 76542 1112689999999999864322222233444555555543 334444444333 556666666
Q ss_pred HHHHcCCcEEE
Q 001045 238 IFKKCGRKVCV 248 (1176)
Q Consensus 238 ia~~~g~~I~v 248 (1176)
+.+.++.+|.+
T Consensus 249 ~~~~~~~~v~~ 259 (268)
T 1zkp_A 249 AKQIFSGHITL 259 (268)
T ss_dssp HHTTCCSEEEE
T ss_pred HHHhCCCCEEE
Confidence 66667777766
No 25
>3kyh_C MRNA-capping enzyme subunit alpha; 5' modification, triphosphatase, guanylyltransferase, complex, hydrolase, mRNA processing, nucleus; 3.00A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.3e-19 Score=212.03 Aligned_cols=163 Identities=17% Similarity=0.197 Sum_probs=120.4
Q ss_pred HhccCceEEEEEecceeEEEEEEee-----CCeEEEEcCCCccCC---CCchhHHHHH-HhhcCCCCCCeEEEEEEEEEe
Q 001045 974 KLFQNKAFTCEYKYDGQRAQIHKLV-----DGTVRIFSRNGDETT---SRFPDLISII-NEFCKPAAGTFILDAEVVAID 1044 (1176)
Q Consensus 974 ~~~~~~~f~~E~KyDGeR~QiH~~~-----~g~V~ifSR~g~d~T---~~ypdl~~~l-~~~~~~~~~~~ILDGElVa~d 1044 (1176)
..+...+|++|+|+||+|+|+.+.. .|.|.++||+++.++ .+||.+.+.= ..++.....++|||||||++.
T Consensus 60 ~~L~~~dY~V~eK~DGiR~Ll~i~~~~~~g~g~v~LidR~~~~~~v~~~~FP~~~~~~~~~~l~~~~~~TlLDGElV~d~ 139 (461)
T 3kyh_C 60 EKLLAHDYYVCEKTDGLRVLMFIVINPVTGEQGCFMIDRENNYYLVNGFRFPRLPQKKKEELLETLQDGTLLDGELVIQT 139 (461)
T ss_dssp HTTSSSCEEEEEEECSEEEEEEEEECTTTCCEEEEEECSSSCEEEECCCCCCCCSSCCSSGGGTCCCCSEEEEEEEEEEE
T ss_pred HHhccCCEEEEEcccceEEEEEEeccccCCCceEEEEeCCCCeEEcccccCCcccccchhhhhhccCCCeEEEEEEEecc
Confidence 5577889999999999999999852 378999999999996 6899876520 000112457899999999964
Q ss_pred cCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhcccC-----------
Q 001045 1045 RKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEK----------- 1113 (1176)
Q Consensus 1045 ~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~~----------- 1113 (1176)
. + + +...+++|++||||++||++|+++||.+|+++|+++|..+.
T Consensus 140 ~--~-----~------------------~~~~~~~y~~FDlL~~~G~dl~~~pl~eR~~~Le~~I~~P~~~~~~~~p~~~ 194 (461)
T 3kyh_C 140 N--P-----M------------------TKLQELRYLMFDCLAINGRCLTQSPTSSRLAHLGKEFFKPYFDLRAAYPNRC 194 (461)
T ss_dssp C--T-----T------------------TCCEEEEEEEEEEEEETTEECSSSBHHHHHHHHHHTTHHHHHHHHHHCSTTC
T ss_pred C--C-----C------------------CCccceEEEEEEEEeECCcCcccCCHHHHHHHHHHHhcccchhhhhcccccc
Confidence 2 1 0 01246999999999999999999999999999999873211
Q ss_pred ---CCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHH--HHhCCCceEEEecCCCCCCcccCCCCCCC
Q 001045 1114 ---MGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEE--ALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176 (1176)
Q Consensus 1114 ---~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~--ai~~g~EGlmvK~ld~~s~Y~pGkRs~~W 1176 (1176)
+-.+.+.. .....+++.+|+. ++..|.||||+|..+ ++|.+|.|+.+|
T Consensus 195 ~~~pF~V~~K~-------------~~~~~~~~~l~~~~~~l~~~~EGLv~k~~~--spY~~Ggr~~~~ 247 (461)
T 3kyh_C 195 TTFPFKISMKH-------------MDFSYQLVKVAKSLDKLPHLSDGLIFTPVK--APYTAGGKDSLL 247 (461)
T ss_dssp SCCCSEEEECC-------------CEEGGGHHHHHHHHTTCSSCEEEEEEEESS--SBCCSSSEEEEE
T ss_pred ccCCcEEEecc-------------chhhhhHHHHHHhhhhccCCCCeEEEEeCC--CCCcCCCcCCCe
Confidence 10122111 1122456667763 478999999999987 999997787766
No 26
>2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7
Probab=99.77 E-value=1.5e-18 Score=195.70 Aligned_cols=159 Identities=17% Similarity=0.113 Sum_probs=126.8
Q ss_pred ccCCCCCCCCCCCCCCCCCeeE-e----CCccEEEecCCc----------CCCCccEEEeccCChhhhCCcccCC-----
Q 001045 22 QSSPPDSLIFPPIPRTFPPSKH-V----PNTRFLIDAFRY----------AADFSVSYFLSHFHSDHYTGLSPSW----- 81 (1176)
Q Consensus 22 ~~~l~s~~~~p~~~r~~p~~~~-i----pg~~~liD~~~~----------~~~~i~avfITHaH~DHiggL~~l~----- 81 (1176)
+..||+|+++|.+.|..+++.+ . .+..++||++.. ...++++|||||.|.||++|++.+.
T Consensus 4 i~~LGtg~~~p~~~r~~~~~li~~~~~~~~~~iliD~G~~~~~~l~~~~~~~~~i~~i~iTH~H~DH~~gl~~l~~~~~~ 83 (306)
T 2cbn_A 4 LIFLGTSAGVPTRTRNVTAILLNLQHPTQSGLWLFDCGEGTQHQLLHTAFNPGKLDKIFISHLHGDHLFGLPGLLCSRSM 83 (306)
T ss_dssp EEEEECBSSSCCSSCCBCEEEEECCCSSCCCEEEECCCTTHHHHHHTSCCCTTTEEEEECSCCCHHHHTTHHHHHHHHHH
T ss_pred EEEEEcCCCCCCCCCCCCEEEEEeecCCCCcEEEEECCHHHHHHHHHhCCCHHHcCEEEEecCCchhhCChHHHHHHHHh
Confidence 4568999999999999999999 5 678899999832 2357899999999999999998542
Q ss_pred ----CCceEEeCHHHHHHHHHhhccC------CCceEEeCCCceEEECCEEEEEEecCCCcCceEEEEEEcC--------
Q 001045 82 ----SKGIIFCSEITSRLLSQILNIN------PKFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPG-------- 143 (1176)
Q Consensus 82 ----~~~pIY~s~~T~~ll~~~l~~~------~~~i~~l~~~~~~~i~~~~Vt~~~a~H~pGS~~flie~~~-------- 143 (1176)
.+.+||+++.+.+.+...+... ...++.+..++.+.+++++|+++++.|.+++++|.|+.+.
T Consensus 84 ~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~H~~~~~gy~i~~~~~~~~~~~~ 163 (306)
T 2cbn_A 84 SGIIQPLTIYGPQGIREFVETALRISGSWTDYPLEIVEIGAGEILDDGLRKVTAYPLEHPLECYGYRIEEHDAPGALNAQ 163 (306)
T ss_dssp TTCCSCEEEEESTTHHHHHHHHHHHTTCCCSSCEEEEECCSEEEEECSSEEEEEEECBSSSCCEEEEEEECCCCCCBCHH
T ss_pred cCCCCCeEEEcCccHHHHHHHHHHhhccCCCceEEEEEcCCCcEeecCCEEEEEEEccCCCCccEEEEEecCccCccCHH
Confidence 2578999999999988765321 1235678888899999999999999999999999998521
Q ss_pred ---------------------------------------CCCcccEEEEECCCCCcccccchhhhhccCCCcEEEEeCCC
Q 001045 144 ---------------------------------------RNGGFERYVHTGDFRFCKTMLLQPVMNEFAGCDAVFLDTTY 184 (1176)
Q Consensus 144 ---------------------------------------~~G~~~~IlYTGDfr~~~~~~~~~~l~~~~~vDvLI~EsTy 184 (1176)
.+| ++|+|+||+++.+.. ...+.++|+||+||||
T Consensus 164 ~~~~~gv~~~~~~~~l~~g~~v~~~~G~~~~~~~~~~~~~~g--~~i~~sgDt~~~~~~-----~~~~~~~D~li~E~t~ 236 (306)
T 2cbn_A 164 ALKAAGVPPGPLFQELKAGKTITLEDGRQINGADYLAAPVPG--KALAIFGDTGPCDAA-----LDLAKGVDVMVHEATL 236 (306)
T ss_dssp HHHHTTCCSSHHHHHHHHTCCCEETTTEECCGGGTBCCCCCC--CEEEECCSCBSCSTH-----HHHHTTCSEEEEECCB
T ss_pred HHHHcCCCCchHHHHhcCCCeEEcCCCcEEcHHHhcCCCCCC--CEEEEeCCCCCHHHH-----HHHhcCCCEEEEECcC
Confidence 124 689999999987642 1223689999999999
Q ss_pred CCC
Q 001045 185 CNP 187 (1176)
Q Consensus 185 ~~~ 187 (1176)
.+.
T Consensus 237 ~~~ 239 (306)
T 2cbn_A 237 DIT 239 (306)
T ss_dssp CGG
T ss_pred Chh
Confidence 864
No 27
>1y44_A Ribonuclease Z; zinc-dependent metal hydrolase, hydrolase; HET: MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A*
Probab=99.77 E-value=1.5e-18 Score=197.04 Aligned_cols=159 Identities=18% Similarity=0.218 Sum_probs=126.4
Q ss_pred ccCCCCCCCCCCCCCCCCCeeE-e---CCccEEEecCCc----------CCCCccEEEeccCChhhhCCcccCC------
Q 001045 22 QSSPPDSLIFPPIPRTFPPSKH-V---PNTRFLIDAFRY----------AADFSVSYFLSHFHSDHYTGLSPSW------ 81 (1176)
Q Consensus 22 ~~~l~s~~~~p~~~r~~p~~~~-i---pg~~~liD~~~~----------~~~~i~avfITHaH~DHiggL~~l~------ 81 (1176)
+..||||+++|...+..+++.+ . .+..++||++.. ...++++|||||.|.||++|++.+.
T Consensus 3 i~~LGtg~~~p~~~r~~~~~li~~~~~~~~~iLiD~G~~~~~~l~~~~~~~~~i~~I~iTH~H~DH~~gl~~l~~~~~~~ 82 (320)
T 1y44_A 3 LLFLGTGAGIPAKARNVTSVALKLLEERRSVWLFDCGEATQHQMLHTTIKPRKIEKIFITHMHGDHVYGLPGLLGSRSFQ 82 (320)
T ss_dssp EEEEECBSSSCCSSCCBCEEEEEETTTTSEEEEECCCTTHHHHHTTSSCCGGGEEEEECSBCCGGGTTTHHHHHHHHHHT
T ss_pred EEEEecCCCCCCccCCCCEEEEEEecCCCcEEEEECCHHHHHHHHHcCCCHHHcCEEEEeCCChhhhCCHHHHHHHHHhc
Confidence 4468999999999999999999 5 778999999831 1247899999999999999998642
Q ss_pred ---CCceEEeCHHHHHHHHHhhccC------CCceEEeCCCceEEECCEEEEEEecCCCcCceEEEEEEcC---------
Q 001045 82 ---SKGIIFCSEITSRLLSQILNIN------PKFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPG--------- 143 (1176)
Q Consensus 82 ---~~~pIY~s~~T~~ll~~~l~~~------~~~i~~l~~~~~~~i~~~~Vt~~~a~H~pGS~~flie~~~--------- 143 (1176)
.+.+||+++.+.+++...+... ...++.+..++.+.+++++|++++++|.+++++|+|+...
T Consensus 83 ~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~p~~H~~~~~gy~i~~~~~~~~~~~~~ 162 (320)
T 1y44_A 83 GGEDELTVYGPKGIKAFIETSLAVTKTHLTYPLAIQEIEEGIVFEDDQFIVTAVSVIHGVEAFGYRVQEKDVPGSLKADV 162 (320)
T ss_dssp TCCSCEEEEESTTHHHHHHHHHHHTTCCCSSCEEEEECCSEEEEECSSEEEEEEECBSSSSBEEEEEEECCBCCCC----
T ss_pred CCCCCEEEEeCHHHHHHHHHHHHhhccCCCCceEEEEcCCCceEecCCEEEEEEEccCCCCcceEEEecCCCcCccCHHH
Confidence 2578999999999888664321 1235678888899999999999999999999999998521
Q ss_pred --------------------------------------CCCcccEEEEECCCCCcccccchhhhhccCCCcEEEEeCCCC
Q 001045 144 --------------------------------------RNGGFERYVHTGDFRFCKTMLLQPVMNEFAGCDAVFLDTTYC 185 (1176)
Q Consensus 144 --------------------------------------~~G~~~~IlYTGDfr~~~~~~~~~~l~~~~~vDvLI~EsTy~ 185 (1176)
.+| ++|+|+||+++.+.. ...+.++|+||+||||.
T Consensus 163 ~~~~g~~~g~~~~~l~~g~~v~~~~G~i~~~~~~~~~~~~g--~~i~~sgDt~~~~~~-----~~~~~~~D~li~E~t~~ 235 (320)
T 1y44_A 163 LKEMNIPPGPVYQKIKKGETVTLEDGRIINGNDFLEPPKKG--RSVVFSGDTRVSDKL-----KELARDCDVMVHEATFA 235 (320)
T ss_dssp ----------------------------------CCCCBCC--CEEEECCSCBCCHHH-----HHHTTTCSEEEEECCBC
T ss_pred HHHcCCCCchhHHHhhCCCeEEcCCCeEEcHHHhcccCCCC--CEEEEeCCCCCHHHH-----HHHhCCCCEEEEeccCC
Confidence 023 689999999987631 22236899999999998
Q ss_pred CC
Q 001045 186 NP 187 (1176)
Q Consensus 186 ~~ 187 (1176)
+.
T Consensus 236 ~~ 237 (320)
T 1y44_A 236 KE 237 (320)
T ss_dssp TT
T ss_pred cc
Confidence 74
No 28
>3rtx_A MRNA-capping enzyme; guanylyltransferase, RNA polymerase II CTD, lysyl-N-GMP, NUC mRNA capping, transferase; HET: SEP GUN; 2.81A {Mus musculus} PDB: 3s24_A
Probab=99.76 E-value=2.8e-19 Score=204.17 Aligned_cols=154 Identities=16% Similarity=0.230 Sum_probs=106.6
Q ss_pred cCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCC---CCchhHHHHHHhhcCCCCCCeEEEEEEEEEecCCCCcccC
Q 001045 977 QNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETT---SRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMS 1053 (1176)
Q Consensus 977 ~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T---~~ypdl~~~l~~~~~~~~~~~ILDGElVa~d~~~g~~~~p 1053 (1176)
...+|++|+||||+|+|+++.++|+|.+|||+++++| .+||++.+. . ....++|||||||+++. +|
T Consensus 61 ~~~~y~v~~K~DG~R~ll~i~~~~~v~L~sR~~~~~~~~~~~FP~~~~~--~---~~~~~tvLDGElV~~~~-~g----- 129 (343)
T 3rtx_A 61 EQKPYKVSWKADGTRYMMLIDGTNEVFMIDRDNSVFHVSNLEFPFRKDL--R---MHLSNTLLDGEMIIDKV-NG----- 129 (343)
T ss_dssp HHSCEEEEEECCCEEEEEEECSTTCEEEECTTCCEEEETTCCCEETTEE--E---EECCSEEEEEEEEEEES-SS-----
T ss_pred ccCCEEEEECCCceEEEEEEEcCCEEEEEeCCCCeEEeccccCCcchhh--h---ccCCCeEEEEEEEEecC-CC-----
Confidence 3468999999999999999954789999999999985 589988653 1 13578999999999863 22
Q ss_pred hHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhccc--------------CCCcEEE
Q 001045 1054 FQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDE--------------KMGYFQY 1119 (1176)
Q Consensus 1054 Fq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~--------------~~~~i~~ 1119 (1176)
...+.|++||+|++||++++++||.+||++|++.+..+ .|-.+.+
T Consensus 130 ---------------------~~~~~~~~FDlL~~~G~dl~~~pl~eR~~~L~~~i~~p~~~~~~~~~~~~~~~pf~vr~ 188 (343)
T 3rtx_A 130 ---------------------QAVPRYLIYDIIKFNAQPVGDCDFNIRLQCIEREIISPRHEKMKTGLIDKTQEPFSVRP 188 (343)
T ss_dssp ---------------------SEEEEEEEEEEEEBTTBCGGGSCHHHHHHHHHHHTHHHHHHHHHHSSCCTTTSSSEEEE
T ss_pred ---------------------cEeeEEEEEEEEeECCcCcccCCHHHHHHHHHHHhhhHHHHHhhcccccccCCCcEEEE
Confidence 01369999999999999999999999999999854221 1223444
Q ss_pred eEEEEEcCCCCCCccccCHHHHH-HHHHHHHhCCCceEEEecCCCCCCcccCCCCCCC
Q 001045 1120 AKEMTVEGDDNCLTSDVSLSKIN-NFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSW 1176 (1176)
Q Consensus 1120 ~~~~~v~~~~~~~~~~~~~eei~-~~~~~ai~~g~EGlmvK~ld~~s~Y~pGkRs~~W 1176 (1176)
.+.... ...+.+. .-|..++..+.||||+|..+ +|.+| |+.+|
T Consensus 189 K~~~~~----------~~~~~ll~~~~~~~l~~~~dGlIf~~~~---~Y~~G-~~~~~ 232 (343)
T 3rtx_A 189 KQFFDI----------NISRKLLEGNFAKEVSHEMDGLIFQPIG---KYKPG-RCDDI 232 (343)
T ss_dssp CCCEEG----------GGHHHHSCC----------CEEEEEESS---CCCCE-EEEEE
T ss_pred EEeEeh----------hhHHHHHhhhhHhhcCCCCCeEEEEECc---cCcCC-CCcce
Confidence 444432 1222222 12467889999999999874 89987 65444
No 29
>3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli} PDB: 3p2u_A
Probab=99.70 E-value=4e-17 Score=180.13 Aligned_cols=166 Identities=15% Similarity=0.120 Sum_probs=119.3
Q ss_pred CCCCCCCeeE-eCCccEEEecCCc------CCCCccEEEeccCChhhhCCcccCCC----CceEEeCHHHHHHHHHhhcc
Q 001045 34 IPRTFPPSKH-VPNTRFLIDAFRY------AADFSVSYFLSHFHSDHYTGLSPSWS----KGIIFCSEITSRLLSQILNI 102 (1176)
Q Consensus 34 ~~r~~p~~~~-ipg~~~liD~~~~------~~~~i~avfITHaH~DHiggL~~l~~----~~pIY~s~~T~~ll~~~l~~ 102 (1176)
..|..+++.+ ..+..++||++.. ...++++|||||.|.||++|++.+.. +.+||+++.+..+ ...+..
T Consensus 35 ~~r~~s~~li~~~~~~iLiD~G~~~~~~~~~~~~id~IliTH~H~DHi~gl~~l~~~~~~~~~v~~~~~~~~~-~~~~~~ 113 (258)
T 3g1p_A 35 YRRQPCSGVVKFNDAITLIDAGLHDLADRWSPGSFQQFLLTHYHMDHVQGLFPLRWGVGDPIPVYGPPDEQGC-DDLFKH 113 (258)
T ss_dssp GCBCBSEEEEEETTEEEEECCCCTTHHHHCCTTSSCEEECSCCCHHHHGGGTTTTTCSSSCEEEEECCCSSCS-TTTTTS
T ss_pred ccccCceEEEEECCcEEEEECCchHHHhhcCcccCCEEEEccCchhHhCCHHHHhccCCCCeEEEeChhhhhH-HHHhcC
Confidence 4567777777 6899999999821 23679999999999999999987643 4789999988721 111211
Q ss_pred CC--CceEEeCCCceEEECCEEEEEEecCCCcCceEEEEEEcCCCCcccEEEEECCCCCcccccchhhhhccCCCcEEEE
Q 001045 103 NP--KFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFCKTMLLQPVMNEFAGCDAVFL 180 (1176)
Q Consensus 103 ~~--~~i~~l~~~~~~~i~~~~Vt~~~a~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~~~~~~~~~l~~~~~vDvLI~ 180 (1176)
.. .....+..++.+.+++++|+++++.|.+++++|+|+.++ ++++||||+.+.+...... +.. .++|+||+
T Consensus 114 ~~~~~~~~~~~~g~~~~~g~~~v~~~~~~H~~~~~g~~i~~~~-----~~i~~~GDt~~~~~~~~~~-l~~-~~~Dlli~ 186 (258)
T 3g1p_A 114 PGLLDFSHTVEPFVVFDLQGLQVTPLPLNHSKLTFGYLLETAH-----SRVAWLSDTAGLPEKTLKF-LRN-NQPQVMVM 186 (258)
T ss_dssp CTTEEEEEECCTTCCEEETTEEEEEEECCSSSCCEEEEEECSS-----CEEEEECSCSSCCHHHHHH-HHH-TCCSEEEE
T ss_pred CCccccccccCCCCeEEECCEEEEEEECCCCCCceEEEEEeCC-----cEEEEECCCCCCCHHHHHH-HHh-CCCCEEEE
Confidence 11 113578899999999999999999999999999999743 6999999998765422111 111 58999999
Q ss_pred eCCCCCCCCCCCChHHHHHHHHHHHHHH
Q 001045 181 DTTYCNPKFLFPLQEESVEYVVNVVNRV 208 (1176)
Q Consensus 181 EsTy~~~~~~~p~~~e~~~~l~~~i~~~ 208 (1176)
|+||....+. ...+...+++.+.++++
T Consensus 187 e~t~~~~~~~-~~~H~~~~~a~~~~~~~ 213 (258)
T 3g1p_A 187 DCSHPPRADA-PRNHCDLNTVLALNQVI 213 (258)
T ss_dssp ECCBSSCSSC-CSSSCBHHHHHHHHHHH
T ss_pred eCCCCCcccc-CCCCCCHHHHHHHHHHc
Confidence 9999864321 12234444556666655
No 30
>3zwf_A Zinc phosphodiesterase ELAC protein 1; beta-lactamase, hydrolase, metal-binding, tRNA processing, zinc-binding, catabolism; 1.70A {Homo sapiens}
Probab=99.68 E-value=9.2e-17 Score=186.70 Aligned_cols=161 Identities=14% Similarity=0.071 Sum_probs=120.3
Q ss_pred ccCCCCCCCCCCCCCCCCCeeE-eCCccEEEecCCc----------CCCCccEEEeccCChhhhCCcccCC---------
Q 001045 22 QSSPPDSLIFPPIPRTFPPSKH-VPNTRFLIDAFRY----------AADFSVSYFLSHFHSDHYTGLSPSW--------- 81 (1176)
Q Consensus 22 ~~~l~s~~~~p~~~r~~p~~~~-ipg~~~liD~~~~----------~~~~i~avfITHaH~DHiggL~~l~--------- 81 (1176)
+-.||+|+++|.+.+..+++.+ ..+..++|||+.. ...++++|||||.|.||++||+.+.
T Consensus 3 l~~LGtg~~~p~~~r~~ss~ll~~~~~~iLiD~G~g~~~~l~~~~~~~~~id~I~iTH~H~DHi~gl~~l~~~~~~~~~~ 82 (368)
T 3zwf_A 3 VTFLGTGAAYPSPTRGASAVVLRCEGECWLFDCGEGTQTQLMKSQLKAGRITKIFITHLHGDHFFGLPGLLCTISLQSGS 82 (368)
T ss_dssp EEEEECBSSSCCSSSCSSEEEEEETTEEEEECCCTTHHHHHHHSSSCGGGEEEEECCCSSGGGTTTHHHHHHHHHHHC--
T ss_pred EEEECCCCCCCCCCCCccEEEEEECCeEEEEeCChhHHHHHHHcCCChHHCCEEEECCCChHHhCcHHHHHHHhhhcccc
Confidence 3468999999999999999999 7889999999832 1147999999999999999998643
Q ss_pred ----CCceEEeCHHHHHHHHHhhccCC------CceEEeCC---------------------------Cc----------
Q 001045 82 ----SKGIIFCSEITSRLLSQILNINP------KFIYPLPI---------------------------KI---------- 114 (1176)
Q Consensus 82 ----~~~pIY~s~~T~~ll~~~l~~~~------~~i~~l~~---------------------------~~---------- 114 (1176)
.+.+||+++.+.+.+...+.+.. -.++.+.. |.
T Consensus 83 ~~~~~~l~iygp~~~~~~l~~~l~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~ 162 (368)
T 3zwf_A 83 MVSKQPIEIYGPVGLRDFIWRTMELSHTELVFHYVVHELVPTADQCPAEELKEFAHVNRADSPPKEEQGRTILLDSEENS 162 (368)
T ss_dssp ----CCEEEEEETTHHHHHHHHHHHTTCCCSSCEEEEEECCCGGGSCC-------------------CCCEECCBTTTTB
T ss_pred ccCCCCeEEEEcHHHHHHHHHHHHhhCcCCCceEEEEEeecCccccccccccccccccccccCcccccccccccccccCc
Confidence 26799999999999887653211 12333432 22
Q ss_pred --eEEECCEEEEEEecCCCcCceEEEEEEcCCC-----------------------------------------------
Q 001045 115 --PVLIDGCEVVLVGANHCPGAVQFLFKVPGRN----------------------------------------------- 145 (1176)
Q Consensus 115 --~~~i~~~~Vt~~~a~H~pGS~~flie~~~~~----------------------------------------------- 145 (1176)
.++.++++|+++++.|...+++|+|+.+...
T Consensus 163 ~~~~~~~~~~V~a~~~~H~vp~~gy~i~e~~~~g~~~~ek~~~~gip~G~~~~~Lk~G~~v~~~dG~~i~~~~v~~~~~~ 242 (368)
T 3zwf_A 163 YLLFDDEQFVVKAFRLFHRIPSFGFSVVEKKRPGKLNAQKLKDLGVPPGPAYGKLKNGISVVLENGVTISPQDVLKKPIV 242 (368)
T ss_dssp EEEEECSSEEEEEEEEESSSCEEEEEEEECC------------------------------------------------C
T ss_pred eeEEeCCCEEEEEEeccCCCceEEEEEEecCCcCccCHHHHHHcCCCchHHHHhcCCCCeEEecCCEEEEhHHhcccccc
Confidence 2334789999999999888999999875211
Q ss_pred CcccEEEEECCCCCcccccchhhhhccCCCcEEEEeCCCCCC
Q 001045 146 GGFERYVHTGDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNP 187 (1176)
Q Consensus 146 G~~~~IlYTGDfr~~~~~~~~~~l~~~~~vDvLI~EsTy~~~ 187 (1176)
| ++|+|+||+++.. .......+.++|+||+|+||.+.
T Consensus 243 g--~~v~~~GDT~~~~---~~~~~~~~~~~Dlli~Eat~~~~ 279 (368)
T 3zwf_A 243 G--RKICILGDCSGVV---GDGGVKLCFEADLLIHEATLDDA 279 (368)
T ss_dssp C--CEEEEECSCSEEC---SSHHHHHTTTCSEEEEECCSCGG
T ss_pred c--eEEEEEecCCccc---chhHHHHhcCCCEEEEecCCChH
Confidence 3 6899999987611 11122233789999999999874
No 31
>2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.97A {Thermotoga maritima} SCOP: d.157.1.7 PDB: 1ww1_A
Probab=99.67 E-value=2.5e-16 Score=174.65 Aligned_cols=186 Identities=16% Similarity=0.121 Sum_probs=124.3
Q ss_pred eCCccEEEecCCc-------CCCCccEEEeccCChhhhCCcccCC------C-----CceEEeCHHHHHHHHHhhc----
Q 001045 44 VPNTRFLIDAFRY-------AADFSVSYFLSHFHSDHYTGLSPSW------S-----KGIIFCSEITSRLLSQILN---- 101 (1176)
Q Consensus 44 ipg~~~liD~~~~-------~~~~i~avfITHaH~DHiggL~~l~------~-----~~pIY~s~~T~~ll~~~l~---- 101 (1176)
+.+..++||++.. ...++++|||||+|.||++|++.+. . +.+||+++.+. .+...+.
T Consensus 17 i~~~~iLiD~G~~~~~~l~~~~~~i~~IliTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~v~~~~~~~-~l~~~~~~~~~ 95 (280)
T 2e7y_A 17 YSPERILFDAGEGVSTTLGSKVYAFKYVFLTHGHVDHIAGLWGVVNIRNNGMGDREKPLDVFYPEGNR-AVEEYTEFIKR 95 (280)
T ss_dssp EGGGTEEEEECTTHHHHHGGGGGGCCEEECSCCCHHHHTTHHHHHHHHHHHSGGGCCCEEEEEETTCH-HHHHHHHHHHH
T ss_pred ECCcEEEEECCcchHHHhccCccCCCEEEEeCCchhHHCCHHHHHHHHHHhccCCCCCCEEEECccHH-HHHHHHHHHhh
Confidence 4678899999832 2367999999999999999998751 1 47999999998 7665431
Q ss_pred ----cC-CCceEEeCCCceEEEC-----CEEEEEEecCCCcC--ceEEEEEEc-----------------------C---
Q 001045 102 ----IN-PKFIYPLPIKIPVLID-----GCEVVLVGANHCPG--AVQFLFKVP-----------------------G--- 143 (1176)
Q Consensus 102 ----~~-~~~i~~l~~~~~~~i~-----~~~Vt~~~a~H~pG--S~~flie~~-----------------------~--- 143 (1176)
.. ...++.+..|+++.++ +++|++++++|.+| +++|+|+.. +
T Consensus 96 ~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~v~~~~~~H~~~~~~~g~~i~~~~~~l~~~~~g~~~~~~~~l~~~~g~~~ 175 (280)
T 2e7y_A 96 ANPDLRFSFNVHPLKEGERVFLRNAGGFKRYVQPFRTKHVSSEVSFGYHIFEVRRKLKKEFQGLDSKEISRLVKEKGRDF 175 (280)
T ss_dssp HCGGGTTTEEEEEECTTCCEECCCSSCSCEEEEEEECCSCSSSCCEEEEEEEEEEEECGGGTTCCHHHHHHHHHHHCTGG
T ss_pred cccCCCCceEEEEcCCCCEEEeCCcccCCEEEEEEEccCCCCCceEEEEEEEcccccCHhhcCCCHHHHHHHHhhcCCce
Confidence 11 1246788899999998 89999999999999 999999741 0
Q ss_pred ----CCCcccEEEEECCCCCcccccchhhhhccCCCcEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHHhhhccccCCCe
Q 001045 144 ----RNGGFERYVHTGDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRVGGELNEGLQKR 219 (1176)
Q Consensus 144 ----~~G~~~~IlYTGDfr~~~~~~~~~~l~~~~~vDvLI~EsTy~~~~~~~p~~~e~~~~l~~~i~~~~~~~~~~~~g~ 219 (1176)
.+| ++|+|+||+++. ... .+.++|+||+||||.++.......+...+++.+.++++ +.+
T Consensus 176 ~~~~~~g--~~i~ysgDt~~~---~~~----~~~~~d~li~e~t~~~~~~~~~~~H~t~~~a~~~~~~~--------~~~ 238 (280)
T 2e7y_A 176 VTEEYHK--KVLTISGDSLAL---DPE----EIRGTELLIHECTFLDARDRRYKNHAAIDEVMESVKAA--------GVK 238 (280)
T ss_dssp GEEEEEE--EEEEECCSCSSC---CHH----HHTTCSCEEEECCBC--------CCCBHHHHHHHHHHH--------TCC
T ss_pred ecCCccC--CEEEEECCCChH---HHH----hhcCCCEEEEeCCcCChhhHHhcCCCCHHHHHHHHHHc--------CCC
Confidence 013 589999999877 111 12689999999999875321122344445566666655 223
Q ss_pred EEEEEecccc--c-hHHHHHHHHHH-c-CCcEEE
Q 001045 220 VLFLVATYVI--G-KEKILIEIFKK-C-GRKVCV 248 (1176)
Q Consensus 220 vlvli~~~sl--G-R~q~ll~ia~~-~-g~~I~v 248 (1176)
. +++.+|+- . ..+.+++.+++ + +.+|.+
T Consensus 239 ~-lvl~H~~~~~~~~~~~~~~~~~~~~~~~~v~~ 271 (280)
T 2e7y_A 239 K-VILYHISTRYIRQLKSVIKKYREEMPDVEILY 271 (280)
T ss_dssp E-EEEESCCGGGHHHHHHHHHHHHHHCTTSEEEE
T ss_pred E-EEEEeecCcCcchHHHHHHHHHHhCCCceEEE
Confidence 3 34445553 2 23445544443 3 346665
No 32
>3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics, structural genomics center for infectious disease; HET: 5GP TLA; 1.27A {Brucella melitensis biovar abortus} PDB: 3qh8_A* 3py6_A* 3py5_A*
Probab=99.65 E-value=2e-15 Score=169.78 Aligned_cols=157 Identities=13% Similarity=0.117 Sum_probs=117.4
Q ss_pred CCCCCCeeEe---CC---ccEEEecCCc--------CCCCccEEEeccCChhhhCCcccCC-------CCceEEeCHHHH
Q 001045 35 PRTFPPSKHV---PN---TRFLIDAFRY--------AADFSVSYFLSHFHSDHYTGLSPSW-------SKGIIFCSEITS 93 (1176)
Q Consensus 35 ~r~~p~~~~i---pg---~~~liD~~~~--------~~~~i~avfITHaH~DHiggL~~l~-------~~~pIY~s~~T~ 93 (1176)
.|..+++.+. ++ ..++||++.. ...+|++|||||.|.||++||+.+. .+.+||+++.+.
T Consensus 60 ~R~~~s~li~~~~~~g~~~~iLID~G~~~~~~l~~~~~~~id~IliTH~H~DHi~Gl~~l~~~~~~~~~~~~vy~~~~~~ 139 (293)
T 3md7_A 60 RRRRASLLVERYDAEGNNTVVVIDTGPDFRMQMIDSGVHMLDAAVYTHPHADHIHGIDDLRTYVVDNGRLMDVYANRLTR 139 (293)
T ss_dssp CBCBCEEEEEEECTTCCEEEEEECCCTTHHHHHHHHTCCCCSEEECSCCCHHHHTTGGGGHHHHHHHTSCEEEEECHHHH
T ss_pred cccccEEEEEecCCCCceeEEEEECCccHHHHHHhcCCCcccEEEEcCCCchhhCCHHHHHHHhhcCCCceEEEECHHHH
Confidence 4455777774 34 6999999822 2367999999999999999999653 378999999999
Q ss_pred HHHHHhhccC----------C-CceEEeCCCceEEECC----EEEEEEecCCC-cCceEEEEEEcCCCCcccEEEEECCC
Q 001045 94 RLLSQILNIN----------P-KFIYPLPIKIPVLIDG----CEVVLVGANHC-PGAVQFLFKVPGRNGGFERYVHTGDF 157 (1176)
Q Consensus 94 ~ll~~~l~~~----------~-~~i~~l~~~~~~~i~~----~~Vt~~~a~H~-pGS~~flie~~~~~G~~~~IlYTGDf 157 (1176)
+.+...++.. . ..++.++.++++.+++ ++|+++++.|. .++++|+|+ +++|+||+
T Consensus 140 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~g~~~~~~~v~~~~~~H~~~~~~g~~i~---------~~~y~gDt 210 (293)
T 3md7_A 140 NRLYDTFGYCFETPVGSSYPPILSMHDIAPETPFSIEGAGGAIRFEPFSQVHGDIESLGFRIG---------SVVYCTDV 210 (293)
T ss_dssp HHHHHHCGGGTSCCTTCCCCCCEEEEECCTTCCEEECCTTCCEEEEEEEEEETTEEEEEEEET---------TEEEECSC
T ss_pred HHHHHhhhhhhccccccCCCCceEEEEcCCCCcEEECCCCCcEEEEEEEecCCCCCEEEEEEe---------EEEEECCC
Confidence 9998765311 1 1367788899999999 99999999997 699999985 49999999
Q ss_pred CCcccccchhhhhccCCCcEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHH
Q 001045 158 RFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRV 208 (1176)
Q Consensus 158 r~~~~~~~~~~l~~~~~vDvLI~EsTy~~~~~~~p~~~e~~~~l~~~i~~~ 208 (1176)
...+... +..+.++|+||+|+|+..+...+.+. +++.+.++++
T Consensus 211 ~~~~~~~----~~~~~~~Dlli~e~~~~~~~~~H~~~----~~a~~~~~~~ 253 (293)
T 3md7_A 211 SAFPEQS----LQYIKDADVLIIGALQYRPHPSHFSL----GEALEWIEKL 253 (293)
T ss_dssp SBCCGGG----HHHHTTCSEEEEECCCSSCBTTBCCH----HHHHHHHHHH
T ss_pred CCCCHHH----HHHhcCCCEEEEeCccCCCCCCCCCH----HHHHHHHHHc
Confidence 7543221 22236899999999987654444444 3455555555
No 33
>3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida} SCOP: d.157.1.6 PDB: 1xto_A
Probab=99.58 E-value=3.6e-15 Score=170.16 Aligned_cols=146 Identities=14% Similarity=0.163 Sum_probs=111.1
Q ss_pred CCCCCCCeeE-eCCcc-EEEecCC--------c---------CCCCccEEEeccCChhhhCCcccCC--CCceEEeCHHH
Q 001045 34 IPRTFPPSKH-VPNTR-FLIDAFR--------Y---------AADFSVSYFLSHFHSDHYTGLSPSW--SKGIIFCSEIT 92 (1176)
Q Consensus 34 ~~r~~p~~~~-ipg~~-~liD~~~--------~---------~~~~i~avfITHaH~DHiggL~~l~--~~~pIY~s~~T 92 (1176)
..|..+++.+ ..+.. +|||++. . ...++++|||||.|.||++||+.+. .+++||+++.+
T Consensus 37 ~~R~~ss~li~~~~~~~iLiD~G~~~~~~l~~~~~l~~~~~~~~~~i~~i~lTH~H~DH~~gl~~l~~~~~~~vy~~~~~ 116 (321)
T 3jxp_A 37 TARTQSSIALSDDGVHWILCNASPDIRAQLQAFAPMQPARALRDTGINAIVLLDSQIDHTTGLLSLREGCPHQVWCTDMV 116 (321)
T ss_dssp CCBCBCEEEEESSSSSEEEECCCTTHHHHHHTCGGGCCCSSSSCCSEEEEECSCCCHHHHGGGGGGGGGCCEEEEECHHH
T ss_pred CcccceEEEEEeCCceEEEEeCCchHHHHHHhcccccccccCCcccCCEEEECCCChhhhhhHHHHHhcCCCeEEECHHH
Confidence 4567777777 56676 9999982 1 2357999999999999999999875 36899999999
Q ss_pred HHHHHHhh---cc-C----CCceEEeCCCceEEE---CCEEEEEEecC--------CC-----cCceEEEEEEcCCCCcc
Q 001045 93 SRLLSQIL---NI-N----PKFIYPLPIKIPVLI---DGCEVVLVGAN--------HC-----PGAVQFLFKVPGRNGGF 148 (1176)
Q Consensus 93 ~~ll~~~l---~~-~----~~~i~~l~~~~~~~i---~~~~Vt~~~a~--------H~-----pGS~~flie~~~~~G~~ 148 (1176)
.+.+...+ ++ . ...++.++.++++.+ ++++|+++++. |. ..+++|+|+.+. +|
T Consensus 117 ~~~l~~~~~~f~~~~~~~~~i~~~~i~~g~~~~i~~~~~~~V~~~~v~H~~~~~~~H~~~~~~~~~~Gy~i~~~~-~g-- 193 (321)
T 3jxp_A 117 HQDLTTGFPLFNMLSHWNGGLQWNRIELEGSFVIDACPNLKFTPFPLRSAAPPYSPHRFDPHPGDNLGLMVEDTR-TG-- 193 (321)
T ss_dssp HHHTTTTSCHHHHHTTTTTCEEEEECCSSSCEECTTSTTEEEEEEEECCCCCTTCTTTTSCCTTSEEEEEEEETT-TC--
T ss_pred HHHHHhhCccccccccccCceeEEEcCCCCeEEeccCCCeEEEEEEecCCccccccccccccCCCcEEEEEEecC-CC--
Confidence 99887533 11 1 123678888999999 99999999998 74 479999998311 13
Q ss_pred cEEEEECCCCCcccccchhhhhccCCCcEEEEeCCCCC
Q 001045 149 ERYVHTGDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCN 186 (1176)
Q Consensus 149 ~~IlYTGDfr~~~~~~~~~~l~~~~~vDvLI~EsTy~~ 186 (1176)
++++|+||++..+.. .+..+.++|+||+||||..
T Consensus 194 ~~i~y~~Dt~~~~~~----~~~~~~~~D~li~eat~~~ 227 (321)
T 3jxp_A 194 GKLFYAPGLGQVDEK----LLAMMHGADCLLVDGTLWE 227 (321)
T ss_dssp CEEEEESSCCCCCHH----HHHHHHHCSEEEEECCCSS
T ss_pred cEEEEECCCCCCCHH----HHHHhcCCCEEEEeCCCCC
Confidence 799999999854332 1222368999999999865
No 34
>3kl7_A Putative metal-dependent hydrolase; structural genomics, JOI for structural genomics, JCSG; 2.30A {Parabacteroides distasonis atcc 8503}
Probab=99.46 E-value=3.8e-13 Score=146.71 Aligned_cols=175 Identities=17% Similarity=0.107 Sum_probs=124.1
Q ss_pred CCCCeeE-eCCccEEEecCCcC-----CCCccEEEeccCChhhhCCccc---C-CCCceEEeCHHHHHHHHHhhccCCCc
Q 001045 37 TFPPSKH-VPNTRFLIDAFRYA-----ADFSVSYFLSHFHSDHYTGLSP---S-WSKGIIFCSEITSRLLSQILNINPKF 106 (1176)
Q Consensus 37 ~~p~~~~-ipg~~~liD~~~~~-----~~~i~avfITHaH~DHiggL~~---l-~~~~pIY~s~~T~~ll~~~l~~~~~~ 106 (1176)
..+|+.+ ..+..++||++... ..++++|||||.|.||+ ++.. + ..+.+||+++.+...+. .
T Consensus 36 g~s~~li~~~~~~iliDpg~~~~~~~~~~~id~VliTH~H~DH~-~~~~l~~~~~~~~~v~~~~~~~~~l~--------~ 106 (235)
T 3kl7_A 36 KHGSLMLTYDNHSIQVDPVSEYADYTTFPKADIILITHEHGDHL-DPKAIQAVEKSDTEIIANENSQKKLG--------K 106 (235)
T ss_dssp ETTEEEEEETTEEEEESCCTTTCCTTSSCCCSEEEECCSSTTTC-CHHHHHHHCCTTCEEEECHHHHHHHT--------C
T ss_pred cceEEEEEECCEEEEECCCCCccchhhCCCCCEEEECCCccccC-CHHHHHHhhcCCCEEEEcHHHHHHhc--------C
Confidence 3467777 68889999998432 25799999999999999 4442 2 34789999999988764 2
Q ss_pred eEEeCCCc-eEEECCEEEEEEecCCCcC----------ceEEEEEEcCCCCcccEEEEECCCCCcccccchhhhhccCCC
Q 001045 107 IYPLPIKI-PVLIDGCEVVLVGANHCPG----------AVQFLFKVPGRNGGFERYVHTGDFRFCKTMLLQPVMNEFAGC 175 (1176)
Q Consensus 107 i~~l~~~~-~~~i~~~~Vt~~~a~H~pG----------S~~flie~~~~~G~~~~IlYTGDfr~~~~~~~~~~l~~~~~v 175 (1176)
...+..|+ ++.+++++|+++++.|.++ +++|+|+.++ ++++|+||+.+.+. +..+.++
T Consensus 107 ~~~l~~g~~~~~~g~~~i~~~p~~H~~~~~~~~~~~~~~~g~~i~~~g-----~~i~~~GDt~~~~~------~~~l~~~ 175 (235)
T 3kl7_A 107 GKVLKNGDTDTSISYMKIEAVPAYNTTPGRDKYHPRHRDNGYILTFDG-----LRVYIAGDTEDIPE------MKDLKDI 175 (235)
T ss_dssp SEECCTTCEECCSTTCEEEEEECCCCSTTGGGTSCTTTSEEEEEEETT-----EEEEECCSCCSCGG------GGGCCSC
T ss_pred cEEecCCCEEEEECCEEEEEEEeecCCCccccccCCCCceEEEEEeCC-----eEEEEECCCCchhh------HHhhcCC
Confidence 56788899 9999999999999999542 5899999853 79999999988764 2334689
Q ss_pred cEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHHhhhccccCCCeEEEEEeccccchHHHHHHHHHHcCCcEEE
Q 001045 176 DAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRVGGELNEGLQKRVLFLVATYVIGKEKILIEIFKKCGRKVCV 248 (1176)
Q Consensus 176 DvLI~EsTy~~~~~~~p~~~e~~~~l~~~i~~~~~~~~~~~~g~vlvli~~~slGR~q~ll~ia~~~g~~I~v 248 (1176)
|++++++... .+.+.++ +++.++.. +.+.+|.+ +|.-...+.+.+.+++.|.++.+
T Consensus 176 Dv~il~~~~~----~h~~~~e----a~~~~~~l--------~~k~vip~-H~~~~~~~~~~~~l~~~gi~v~~ 231 (235)
T 3kl7_A 176 DIAFLPVNQP----YTMTVSQ----AAKAARMF--------SPKILYPY-HYGDTKIGELKDALKDSGIDVRI 231 (235)
T ss_dssp SEEEEECCTT----TSCCHHH----HHHHHHHH--------CCSEEEEE-SCTTCCTTHHHHHTTTSCCEECC
T ss_pred CEEEECCCCC----cccCHHH----HHHHHHHc--------CCCEEEEE-cCCCCCHHHHHHHHhhCCCEEEE
Confidence 9999998631 2344443 44444444 33444444 44334445666666666766654
No 35
>2vug_A PAB1020; RNA, ligase, AMPPNP, nucleotidyl- transferase; HET: ANP; 2.9A {Pyrococcus abyssi GE5}
Probab=99.43 E-value=9.4e-13 Score=152.84 Aligned_cols=145 Identities=23% Similarity=0.292 Sum_probs=104.7
Q ss_pred CceEEEEEecceeEEEEEEeeCCeEEEEcCCCcc--CCC-Cchh-HHHHHHhhcCCCCCCeEEEEEEEEEecCCCCcccC
Q 001045 978 NKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDE--TTS-RFPD-LISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMS 1053 (1176)
Q Consensus 978 ~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d--~T~-~ypd-l~~~l~~~~~~~~~~~ILDGElVa~d~~~g~~~~p 1053 (1176)
...|+||+|+||.|+++|+ .+|.++++||++.. +|. .+|+ +...+.. .+.+++||||+++++ .+
T Consensus 94 ~~~~vvEeKlDG~~v~l~y-~~G~v~a~TRg~g~e~iT~n~i~~wip~~L~~----~~~~l~L~GEvv~~~-------~~ 161 (389)
T 2vug_A 94 RGEFYVEEKVDGYNVRVVM-YKGKMLGITRGGFICPFTTERIPDFVPQEFFK----DNPNLILVGEMAGPE-------SP 161 (389)
T ss_dssp SCEEEEEEECCSEEEEEEE-ETTEEEEEETTSCBCHHHHHHGGGTSCTHHHH----HCTTEEEEEEEESSS-------CS
T ss_pred CCeEEEEEeecCcEEEEEE-ECCEEEEEeCCCCCCCCchhhhhHhHHHHHhc----CCCcEEEEEEEEecC-------Ch
Confidence 4689999999999999999 58889999999998 544 4566 3323332 156899999998864 24
Q ss_pred hHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhcccCCCcEEEeEEEEEcCCCCCCc
Q 001045 1054 FQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLT 1133 (1176)
Q Consensus 1054 Fq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~~~~~i~~~~~~~v~~~~~~~~ 1133 (1176)
|+.+.. .....++.|++|||++.++... .|+.+|+++|+++- -+..+.+ ....
T Consensus 162 f~~~n~------------~np~r~l~F~vFDV~~~~~g~~--~s~~er~~~L~~lG-~~~vp~~---~~~~--------- 214 (389)
T 2vug_A 162 YLVEGP------------PYVKEDIQFFLFDVQEIKTGRS--LPVEERLKIAEEYG-INHVEVF---GKYT--------- 214 (389)
T ss_dssp SCSCCC------------TTCCSSCEEEEEEEEETTTCCB--CCHHHHHHHHHHHT-CCBCCEE---EEEE---------
T ss_pred HHHhcc------------cCcccCCEEEEEEeeccCCCCc--CCHHHHHHHHHHcC-CCCCCeE---EEEc---------
Confidence 532210 0114579999999988873332 78999999999984 2222222 2221
Q ss_pred cccCHHHHHHHHHHHHhCCCceEEEecCC
Q 001045 1134 SDVSLSKINNFLEEALHSSCEGIIVKSLD 1162 (1176)
Q Consensus 1134 ~~~~~eei~~~~~~ai~~g~EGlmvK~ld 1162 (1176)
..+.+++.++++.+...+.||||+|..+
T Consensus 215 -~~~~eel~~~i~~~~~~~~EGvViK~~d 242 (389)
T 2vug_A 215 -KDDVDELYQLIERLSKEGREGIIMKSPD 242 (389)
T ss_dssp -GGGHHHHHHHHHHHHHTTCCEEEEECTT
T ss_pred -CCCHHHHHHHHHHhcCCCCCeEEEEECC
Confidence 1256899999999999999999999864
No 36
>3rpc_A Possible metal-dependent hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.49A {Veillonella parvula}
Probab=99.39 E-value=5.2e-12 Score=139.82 Aligned_cols=190 Identities=16% Similarity=0.147 Sum_probs=125.4
Q ss_pred CCCeeE-eCCccEEEecCCcC-----------------------C------CCccEEEeccCChhhhCCcccC--CCCce
Q 001045 38 FPPSKH-VPNTRFLIDAFRYA-----------------------A------DFSVSYFLSHFHSDHYTGLSPS--WSKGI 85 (1176)
Q Consensus 38 ~p~~~~-ipg~~~liD~~~~~-----------------------~------~~i~avfITHaH~DHiggL~~l--~~~~p 85 (1176)
.+++.+ ..|..+|+|++-.. . .++++|||||.|.||++++..+ ..+.+
T Consensus 12 ha~~li~~~g~~iLiDp~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~id~iliTH~H~DH~~~~~~~~~~~~~~ 91 (264)
T 3rpc_A 12 NATGKLTIKNTTFLIDPFLAPKDTYPGFEGTFNYQQRMPMVDLPLSMDDLLSNVTAVVVTHTHLDHWDDTAINSIPKSLP 91 (264)
T ss_dssp TTEEEEEETTEEEEESCCCCCTTCBCCCTTBTTTTSCBSSSCCSSCHHHHHTTCCEEECSCCCGGGSCHHHHHHSCTTSC
T ss_pred CcEEEEEECCEEEEeCcccCCCcCccCCCCcccccccCCCCCCCCCHHHccccCCEEEECCCchhhCCCHHHHhhccCCe
Confidence 456667 78999999994110 0 1689999999999999998753 34789
Q ss_pred EEeC-HHHHHHHHHhhccCCCceEEeCCCceEEECCEEEEEEecCCCcC--------------ceEEEEEEcCCCCcccE
Q 001045 86 IFCS-EITSRLLSQILNINPKFIYPLPIKIPVLIDGCEVVLVGANHCPG--------------AVQFLFKVPGRNGGFER 150 (1176)
Q Consensus 86 IY~s-~~T~~ll~~~l~~~~~~i~~l~~~~~~~i~~~~Vt~~~a~H~pG--------------S~~flie~~~~~G~~~~ 150 (1176)
||++ ..+...+.. .++. .+..+ ++++++++++|+++++.|.++ +++|+|+.++ | ++
T Consensus 92 v~~~~~~~~~~l~~-~g~~--~~~~~--~~~~~~~~~~i~~~pa~H~~~~~~~~p~~~~~~~~~~g~~i~~~~--~--~~ 162 (264)
T 3rpc_A 92 IFVQNTADKELITS-QGFI--DVRII--FESLEFNGITLRKTGGSHGTVEMYANPVLAPLAGDAMGVIFEAAD--E--PT 162 (264)
T ss_dssp EEESSHHHHHHHHH-TTCS--CEEEC--SSEEEETTEEEEEECCCSSCHHHHTSTTHHHHHCCCCEEEEECTT--S--CC
T ss_pred EEEeCHHHHHHHHh-cCCC--eeEEe--cccEEECCEEEEEeccccCCccccccccccccccccEEEEEEeCC--c--cE
Confidence 9999 888887764 3443 23444 689999999999999999654 5899999853 3 69
Q ss_pred EEEECCCCCcccccchhhhhccCCCcEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHHhhhccccCCCeEEEEEeccc--
Q 001045 151 YVHTGDFRFCKTMLLQPVMNEFAGCDAVFLDTTYCNPKFLFPLQEESVEYVVNVVNRVGGELNEGLQKRVLFLVATYV-- 228 (1176)
Q Consensus 151 IlYTGDfr~~~~~~~~~~l~~~~~vDvLI~EsTy~~~~~~~p~~~e~~~~l~~~i~~~~~~~~~~~~g~vlvli~~~s-- 228 (1176)
++|+||+.+.+.... .... .++|++++++++..+.......+...+++++.++.+ +.+.+|.+ +|.
T Consensus 163 i~~~GDt~~~~~~~~--~~~~-~~~Dv~il~~g~~~~~~~~~~~hm~~~ea~~~~~~l--------~~~~vi~~-H~~~~ 230 (264)
T 3rpc_A 163 VYLVGDTVWTSDVEK--ALLR-FDPNVIIMNTGYAQILGFEDSIIMGTKDIGRMVVRK--------PEAKIIAV-HMDTV 230 (264)
T ss_dssp EEECCSCCSCHHHHH--HHHH-HCCSEEEEECSCBCBTTCSSCSSCCHHHHHHHHHHC--------TTSEEEEE-SCSSS
T ss_pred EEEECCcCchHHHHH--HHHH-hCCCEEEEecCccccccccCCcccCHHHHHHHHHhC--------CcCeEEEE-ccccc
Confidence 999999988765321 1111 368999999996543211012233334455555443 23443443 333
Q ss_pred -c--chHHHHHHHHHHcCC--cEEE
Q 001045 229 -I--GKEKILIEIFKKCGR--KVCV 248 (1176)
Q Consensus 229 -l--GR~q~ll~ia~~~g~--~I~v 248 (1176)
. .-.+++.+.+++.|. ++.+
T Consensus 231 ~~~~~~~~~l~~~~~~~g~~~~~~~ 255 (264)
T 3rpc_A 231 NHTATSRKDVRKFIKGNNIESHVAV 255 (264)
T ss_dssp TTBCSCHHHHHHHHHHTTCTTTEEC
T ss_pred cccccCHHHHHHHHHHcCCCCcEEe
Confidence 1 334566777776654 4443
No 37
>3qwu_A DNA ligase; structural genomics, PSI-2, midwest center for structural GE MCSG; HET: DNA ADN; 2.35A {Aquifex aeolicus}
Probab=99.29 E-value=1.7e-11 Score=139.37 Aligned_cols=167 Identities=24% Similarity=0.283 Sum_probs=113.9
Q ss_pred CcCCCCCc-cCCCCcccCChhHHHHhccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccC---CCCchhHHH-HHHh
Q 001045 951 SMVPGVPI-KPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDET---TSRFPDLIS-IINE 1025 (1176)
Q Consensus 951 ~l~~g~Pi-~PMLA~~~~~~~~~~~~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~---T~~ypdl~~-~l~~ 1025 (1176)
.+-+|-|= +-++ .++..++......|++|+|+||.++-+.+ -+|++..+||+|..+ |.++|++.+ .+.+
T Consensus 49 ~vv~GyP~I~R~~-----~L~~~i~~~f~~~~~veEKLDG~NVRi~~-~dG~ilA~TRgG~icP~tT~r~~~~~~~~f~~ 122 (370)
T 3qwu_A 49 FIIWGYPHIGRIF-----LLETGLREQFEAPFWVEEKVDGYNTRIFK-YGDNYYALSRGGFICPFTTDRLPDLIDLRILD 122 (370)
T ss_dssp CEECCCCCCEEES-----CHHHHHHHHCSSCEEEEEECSSEEEEEEE-ETTEEEEECTTSCBCHHHHHHHHHHCCCHHHH
T ss_pred CEECCCCChhhhh-----chhhhhhhcCCCcEEEEEeeCCeEEEEEE-ECCEEEEEcCCCcccCcchhhhhhhcCchhhh
Confidence 45666663 2121 23334444335799999999999988855 388999999999987 666666543 1222
Q ss_pred hcCCCCCCeEEEEEEEEEecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHH
Q 001045 1026 FCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYL 1105 (1176)
Q Consensus 1026 ~~~~~~~~~ILDGElVa~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL 1105 (1176)
.-++++|||||++-+ -||.. +. .. ....++.|++|||...+ ...-+|+.+|+++|
T Consensus 123 ----~~P~l~LdGEl~g~~-------npy~~-----~s-~~------y~~~~i~F~VFDV~d~~--~~~~L~~~eR~~ll 177 (370)
T 3qwu_A 123 ----ENPDLVICAEVAGPE-------NPYIE-----ES-PP------YVKEDVQLFVFDFMKKN--EQGFLSQEEKMELI 177 (370)
T ss_dssp ----HCTTEEEEEEEECTT-------CSSCS-----CC-CT------TCCSSCEEEEEEEEETT--CCSCCCHHHHHHHH
T ss_pred ----cCCCeEEEEEEEcCC-------CCccc-----cC-Cc------ccccCceEEEEeCcccc--CCCcCCHHHHHHHH
Confidence 236999999999832 24431 11 01 11346899999999753 34456999999999
Q ss_pred HHhhcccCCCcEEEeEEEEEcCCCCCCcccc--CHHHHHHHHHHHHhCCCceEEEecCC
Q 001045 1106 KDLFYDEKMGYFQYAKEMTVEGDDNCLTSDV--SLSKINNFLEEALHSSCEGIIVKSLD 1162 (1176)
Q Consensus 1106 ~~~~~~~~~~~i~~~~~~~v~~~~~~~~~~~--~~eei~~~~~~ai~~g~EGlmvK~ld 1162 (1176)
+++- .+ ++.+..+..+ . +.+++.+++++..+.|.||||+|+++
T Consensus 178 ~~~~-lp---~V~ii~~~~~----------~~~~~~~l~~~l~~l~~~g~EGVVlK~~~ 222 (370)
T 3qwu_A 178 EKYN-LP---HVEILGRFTA----------SEEGIKKIKEILKRFNEEGREGVVFKEDS 222 (370)
T ss_dssp HHHT-CC---BCCEEEEECS----------SHHHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred HHCC-CC---CccEEEEeCC----------CCCCHHHHHHHHHHHHhCCCcEEEEecCc
Confidence 9886 22 3334444332 3 56799999999999999999999986
No 38
>3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like fold, MCSG, structural PSI-2, protein structure initiative; 1.80A {Vibrio cholerae o1 biovar eltor}
Probab=99.26 E-value=4.9e-11 Score=139.04 Aligned_cols=117 Identities=15% Similarity=0.113 Sum_probs=88.8
Q ss_pred CCccEEEeccCChhhhC--CcccC---C-CCceEEeCHHHHHHHHHhhccCCCceEEeCCCceEEECCEEEEEEecCCC-
Q 001045 59 DFSVSYFLSHFHSDHYT--GLSPS---W-SKGIIFCSEITSRLLSQILNINPKFIYPLPIKIPVLIDGCEVVLVGANHC- 131 (1176)
Q Consensus 59 ~~i~avfITHaH~DHig--gL~~l---~-~~~pIY~s~~T~~ll~~~l~~~~~~i~~l~~~~~~~i~~~~Vt~~~a~H~- 131 (1176)
.++++|||||.|.||++ ++..+ . .+.+||+++.+.+.+.. +++....++.+..|+.+.+++++|+++++.|.
T Consensus 132 ~~iD~IliTH~H~DHig~~~l~~l~~~~~~~~~v~~~~~~~~~l~~-~g~~~~~~~~l~~g~~~~~g~~~v~~~~~~H~~ 210 (379)
T 3bv6_A 132 KEIDAVLASHDHADHIDVNVAAAVLQNCGEHVKFIGPQACVDLWLG-WGVPQERCIVAKVGDVLEIGDVKIRVLDSFDRT 210 (379)
T ss_dssp CCCSEEECSBCSGGGCCHHHHHHHHHHSCTTCEEEECHHHHHHHHH-HTCCGGGEEECCTTCEEEETTEEEEEEECCCHH
T ss_pred CCCCEEEECCCCcccCChHHHHHHHhcCCCCcEEEecHHHHHHHHH-cCCChhhEEEeCCCCEEEECCEEEEEEeccccc
Confidence 35899999999999996 33322 1 26899999999988875 45543457889999999999999999999883
Q ss_pred ------------cC---------ceEEEEEEcCCCCcccEEEEECCCCCcccccchhhhhccCCCcEEEEeCCC
Q 001045 132 ------------PG---------AVQFLFKVPGRNGGFERYVHTGDFRFCKTMLLQPVMNEFAGCDAVFLDTTY 184 (1176)
Q Consensus 132 ------------pG---------S~~flie~~~~~G~~~~IlYTGDfr~~~~~~~~~~l~~~~~vDvLI~EsTy 184 (1176)
+| +++|+|+.++ ++|+|+||+.+.+.... .... .++|++++....
T Consensus 211 ~~~~~p~~h~~~~G~~~~~~~~~~~g~~i~~~g-----~~i~~sGDt~~~~~~~~--i~~~-~~~Dv~il~~g~ 276 (379)
T 3bv6_A 211 ALVTLPKGVSSYDKAILDGMDERAVNYLIETSG-----GSVYHSGDSHYSNYYAK--HGND-YQIDVALLSYGE 276 (379)
T ss_dssp HHTCCCTTSCSSCGGGGGCHHHHBEEEEEEETT-----EEEEECTTCCCCTTHHH--HHHH-SCCSEEEEEBCC
T ss_pred ccccccccccccccccccccCCceEEEEEEeCC-----eEEEEeCCCCccHHHHH--Hhhc-CCCCEEEecCCC
Confidence 23 7999998854 79999999988754211 1111 378999997653
No 39
>2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A {Escherichia coli} PDB: 2wym_A*
Probab=99.25 E-value=6.1e-11 Score=137.26 Aligned_cols=117 Identities=18% Similarity=0.139 Sum_probs=88.5
Q ss_pred CCccEEEeccCChhhhC--CcccC---C-CCceEEeCHHHHHHHHHhhccCCCceEEeCCCceEEECCEEEEEEecCCC-
Q 001045 59 DFSVSYFLSHFHSDHYT--GLSPS---W-SKGIIFCSEITSRLLSQILNINPKFIYPLPIKIPVLIDGCEVVLVGANHC- 131 (1176)
Q Consensus 59 ~~i~avfITHaH~DHig--gL~~l---~-~~~pIY~s~~T~~ll~~~l~~~~~~i~~l~~~~~~~i~~~~Vt~~~a~H~- 131 (1176)
.++++|||||.|.||++ ++..+ . ...+||+++.+.+.+.. +++....++.+..|+.+.+++++|+++++.|.
T Consensus 108 ~~id~VliTH~H~DHig~~~l~~l~~~~~~~~~v~~p~~~~~~l~~-~g~~~~~~~~l~~g~~~~~g~~~v~~~~~~H~~ 186 (360)
T 2wyl_A 108 RQIDAVLATHDHNDHIDVNVAAAVMQNCADDVPFIGPKTCVDLWIG-WGVPKERCIVVKPGDVVKVKDIEIHALDAFDRT 186 (360)
T ss_dssp CCCSEEECSBSCTTTCCHHHHHHHHHHSCTTCCEEECHHHHHHHHH-HTCCGGGEEECCTTCEEEETTEEEEEEECCCC-
T ss_pred CCCCEEEECCCchhcCCHHHHHHHHhcCCCCCEEEEcHHHHHHHHH-cCCChheEEEcCCCCEEEECCEEEEEEeccCcc
Confidence 46899999999999996 23322 1 26899999999988875 45543457889999999999999999999874
Q ss_pred -----------c---------CceEEEEEEcCCCCcccEEEEECCCCCcccccchhhhhccCCCcEEEEeCCC
Q 001045 132 -----------P---------GAVQFLFKVPGRNGGFERYVHTGDFRFCKTMLLQPVMNEFAGCDAVFLDTTY 184 (1176)
Q Consensus 132 -----------p---------GS~~flie~~~~~G~~~~IlYTGDfr~~~~~~~~~~l~~~~~vDvLI~EsTy 184 (1176)
+ ++++|+|+.++ ++|+|+||+.+.+.... .... .++|++++....
T Consensus 187 ~~~~~~~~~h~~g~~~~~~~~~~~g~~i~~~g-----~~i~~sGDt~~~~~~~~--i~~~-~~~Dv~il~~g~ 251 (360)
T 2wyl_A 187 ALITLPADQKAAGVLPDGMDDRAVNYLFKTPG-----GSLYHSGDSHYSNYYAK--HGNE-HQIDVALGSYGE 251 (360)
T ss_dssp -----------------CCTTTBEEEEEEETT-----EEEEECTTCCCCTTHHH--HHHH-SCCCEEEEEBCC
T ss_pred cccccccccccccccccccCcccEEEEEEECC-----cEEEEeCCCCcCHHHHH--HhhC-CCCCEEEecCCC
Confidence 2 38999999854 69999999988754211 1111 378999997653
No 40
>1vjn_A Zn-dependent hydrolase of metallo-beta-lactamase superfamily TM0207; metallo-hydrolase/oxidoreductase fold, structural genomics; 2.00A {Thermotoga maritima} SCOP: d.157.1.4
Probab=99.15 E-value=2e-10 Score=123.93 Aligned_cols=116 Identities=18% Similarity=0.171 Sum_probs=83.0
Q ss_pred CCCCCeeE-eCCccEEEecCCc----C--CCCccEEEeccCChhhhCCcccCCCCceEEeCHHHHHHHHHhhccCCCceE
Q 001045 36 RTFPPSKH-VPNTRFLIDAFRY----A--ADFSVSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLLSQILNINPKFIY 108 (1176)
Q Consensus 36 r~~p~~~~-ipg~~~liD~~~~----~--~~~i~avfITHaH~DHiggL~~l~~~~pIY~s~~T~~ll~~~l~~~~~~i~ 108 (1176)
+..+++.+ .++..++||++.. . ..++++|||||.|.||++ ++.+..+.+||
T Consensus 18 ~~~~~~li~~~~~~iLiD~g~~~~~~~~~~~~id~VliTH~H~DH~~-~~~l~~~~~vi--------------------- 75 (220)
T 1vjn_A 18 FGHACFALEMEGKTIVTDPFDESVGYPIPNVTADVVTESHQHFDHNA-HHLVKGNFRVI--------------------- 75 (220)
T ss_dssp EETTEEEEEETTEEEEESCCC-----CCCCCBCSEEECSSCC---CG-GGGCBSSCEEE---------------------
T ss_pred ccCCEEEEEECCEEEEEcCCCCcCCCCcCCCCcCEEEECCCCCCCCC-chHhcCCCEEE---------------------
Confidence 45677777 7889999999742 1 367999999999999998 76543333443
Q ss_pred EeCCCceEEECCEEEEEEecCCCc------C-ceEEEEEEcCCCCcccEEEEECCCCCcccccchhhhhccCCCcEEEEe
Q 001045 109 PLPIKIPVLIDGCEVVLVGANHCP------G-AVQFLFKVPGRNGGFERYVHTGDFRFCKTMLLQPVMNEFAGCDAVFLD 181 (1176)
Q Consensus 109 ~l~~~~~~~i~~~~Vt~~~a~H~p------G-S~~flie~~~~~G~~~~IlYTGDfr~~~~~~~~~~l~~~~~vDvLI~E 181 (1176)
..+..+++++++|+++++.|.+ | +++|+|+.++ ++++|+||+.+.+.. ..+..+.++|++++|
T Consensus 76 --~~~g~~~~~~~~I~~~~~~H~~~~g~~~g~~~g~~i~~~g-----~~i~~~GDt~~~~~~---~~~~~~~~~Dvlil~ 145 (220)
T 1vjn_A 76 --DRPGAYTVNGVKIKGVETFHDPSHGRERGKNIVFVFEGEG-----IKVCHLGDLGHVLTP---AQVEEIGEIDVLLVP 145 (220)
T ss_dssp --CSSEEEEETTEEEEEEEEEEC-------CEEEEEEEEETT-----EEEEECTTCCSCCCH---HHHHHHCCCSEEEEE
T ss_pred --cCCCeEEECCEEEEEEeeecCCCCCccCCCcEEEEEEECC-----eEEEEeCCCCCcchH---HHHHhhCCCCEEEEc
Confidence 1123678899999999999965 2 5999999854 799999999887641 122334689999999
Q ss_pred CC
Q 001045 182 TT 183 (1176)
Q Consensus 182 sT 183 (1176)
+.
T Consensus 146 ~g 147 (220)
T 1vjn_A 146 VG 147 (220)
T ss_dssp CC
T ss_pred CC
Confidence 85
No 41
>2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine lactone, DI-nuclear zinc center quenching, AIIB, phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens}
Probab=99.14 E-value=2.2e-10 Score=126.70 Aligned_cols=96 Identities=14% Similarity=0.146 Sum_probs=76.3
Q ss_pred CccEEEeccCChhhhCCcccCCCCceEEeCHHHHHHHHHhhcc-----------------CCCceEEeC-CCceEEEC-C
Q 001045 60 FSVSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLLSQILNI-----------------NPKFIYPLP-IKIPVLID-G 120 (1176)
Q Consensus 60 ~i~avfITHaH~DHiggL~~l~~~~pIY~s~~T~~ll~~~l~~-----------------~~~~i~~l~-~~~~~~i~-~ 120 (1176)
+|++|||||+|.||++|++.+ .+.+||+++.+.+.+...... ....+..++ .++.++++ +
T Consensus 103 ~i~~VilTH~H~DH~gg~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~ 181 (276)
T 2r2d_A 103 DISTVVLSHLHNDHAGCVEYF-GKSRLIAHEDEFATAVRYFATGDHSSPYIVKDIEAWLATPRNWDLVGRDERERELAPG 181 (276)
T ss_dssp GCSEEECSCCSTTTSTTGGGC-SSSEEEEEHHHHHHHHHHHHTTCCSSSSCHHHHHHHTTSCCCEEEECTTCCEEEEETT
T ss_pred HCCEEEecCcccccCCChhhC-CCCEEEECHHHHHHHhccccccccccccchHHhhhhccccccceeccCCCceeEecCC
Confidence 589999999999999999986 678999999998877543211 122356676 47888885 7
Q ss_pred EEEEEE-ecCCCcCceEEEEEEcCCCCcccEEEEECCCCCcc
Q 001045 121 CEVVLV-GANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFCK 161 (1176)
Q Consensus 121 ~~Vt~~-~a~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~~ 161 (1176)
++|... | ||.+|+++|+++.++ + ++++||||+.+..
T Consensus 182 ~~v~~~~p-gHt~g~~~~~~~~~~--~--~~vl~~GD~~~~~ 218 (276)
T 2r2d_A 182 VNLLNFGT-GHASGMLGLAVRLEK--Q--PGFLLVSDACYTA 218 (276)
T ss_dssp EEEEEEES-SSSSSEEEEEEECSS--S--CEEEEEETTSCCH
T ss_pred EEEEeCCC-CCCceeEEEEEEcCC--C--ceEEEEechhhhH
Confidence 999999 6 999999999998743 1 4899999987654
No 42
>3m8t_A 'BLR6230 protein; subclass B3 beta-lactamase, zinc enzyme, sulfonamide complex hydrolase-hydrolase inhibitor complex; HET: 4NZ; 1.33A {Bradyrhizobium japonicum} PDB: 3lvz_A* 2gmn_A
Probab=99.12 E-value=1.2e-10 Score=129.90 Aligned_cols=123 Identities=13% Similarity=0.041 Sum_probs=93.1
Q ss_pred CCCCeeE-eCCccEEEecCCc---------------CCCCccEEEeccCChhhhCCcccCC--CCceEEeCHHHHHHHHH
Q 001045 37 TFPPSKH-VPNTRFLIDAFRY---------------AADFSVSYFLSHFHSDHYTGLSPSW--SKGIIFCSEITSRLLSQ 98 (1176)
Q Consensus 37 ~~p~~~~-ipg~~~liD~~~~---------------~~~~i~avfITHaH~DHiggL~~l~--~~~pIY~s~~T~~ll~~ 98 (1176)
...++.+ .++..++||++.. ...+|++|||||.|.||++|++.+. .+.+||+++.+...+..
T Consensus 54 ~~n~~li~~~~~~iLID~G~~~~~~~~~~~l~~~g~~~~~i~~ii~TH~H~DH~gg~~~l~~~~~~~v~~~~~~~~~~~~ 133 (294)
T 3m8t_A 54 GIAVYVIKTSQGLILMDTAMPQSTGMIKDNIAKLGFKVADIKLILNTHAHLDHTGGFAEIKKETGAQLVAGERDKPLLEG 133 (294)
T ss_dssp SSCCEEEEETTEEEEECCCCGGGHHHHHHHHHHTTCCGGGEEEEECSCCCHHHHTTHHHHHHHHCCEEEEEGGGHHHHHH
T ss_pred CeEEEEEEECCceEEEECCCchhHHHHHHHHHHcCCCHHHCcEEEECCCCccccccHHHHhhccCCEEEEChHHHHHHhc
Confidence 4456666 5778899999831 1125899999999999999998764 36899999999999886
Q ss_pred hhc----------cC-CCceEEeCCCceEEECCEEEEEEec-CCCcCceEEEEEEcCCCCcccEEEEECCCCCc
Q 001045 99 ILN----------IN-PKFIYPLPIKIPVLIDGCEVVLVGA-NHCPGAVQFLFKVPGRNGGFERYVHTGDFRFC 160 (1176)
Q Consensus 99 ~l~----------~~-~~~i~~l~~~~~~~i~~~~Vt~~~a-~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~ 160 (1176)
... +. ......+..|+.+.+++++|+++++ ||.+|+++|+++..++ +..++++||||+.+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~i~~~~~pgHt~g~~~~~~~~~~~-~~~~~~lf~GD~~~~ 206 (294)
T 3m8t_A 134 GYYPGDEKNEDLAFPAVKVDRAVKEGDRVTLGDTTLTAHATPGHSPGCTSWEMTVKDG-KEDREVLFFCSGTVA 206 (294)
T ss_dssp TCBTTBTTCGGGCCCCCCCSEEECTTCEEEETTEEEEEEECCSSSTTCEEEEEEEEET-TEEEEEEECCCCCCT
T ss_pred ccccCccccccCCCCCCCCceEeCCCCEEEeCCEEEEEEeCCCCCccCEEEEEEccCC-CccceEEEEcCccCC
Confidence 521 11 1123568889999999999999986 6999999999986431 111279999998643
No 43
>1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two monomers PER AS UNIT., hydrolase; HET: GOL; 1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A* 1l9y_A
Probab=99.09 E-value=2.9e-10 Score=125.22 Aligned_cols=122 Identities=16% Similarity=0.091 Sum_probs=91.9
Q ss_pred CCCCeeE-eCCccEEEecCCc---------------CCCCccEEEeccCChhhhCCcccCC--CCceEEeCHHHHHHHHH
Q 001045 37 TFPPSKH-VPNTRFLIDAFRY---------------AADFSVSYFLSHFHSDHYTGLSPSW--SKGIIFCSEITSRLLSQ 98 (1176)
Q Consensus 37 ~~p~~~~-ipg~~~liD~~~~---------------~~~~i~avfITHaH~DHiggL~~l~--~~~pIY~s~~T~~ll~~ 98 (1176)
...++.+ .++..++||++.. ...++++||+||.|.||++|++.+. .+.+||+++.+...+..
T Consensus 24 ~~n~~li~~~~~~iLID~G~~~~~~~l~~~l~~~g~~~~~i~~IilTH~H~DH~gg~~~l~~~~~~~v~~~~~~~~~~~~ 103 (263)
T 1k07_A 24 DLASYLIVTPRGNILINSDLEANVPMIKASIKKLGFKFSDTKILLISHAHFDHAAGSELIKQQTKAKYMVMDEDVSVILS 103 (263)
T ss_dssp SBCCEEEEETTEEEEECCCCGGGHHHHHHHHHHTTCCGGGEEEEECSSSSHHHHTTHHHHHHHHCCEEEEEHHHHHHHHT
T ss_pred CeEEEEEEeCCceEEEECCCcccHHHHHHHHHHcCCCHHHCcEEEeCCCCccccccHHHHHHhcCCEEEEcHHHHHHHhc
Confidence 4567777 5778899999842 1135899999999999999998754 26899999999998875
Q ss_pred hh------c------cC-CCceEEeCCCceEEECCEEEEEEec-CCCcCceEEEEEEcCCCCcccEEEEECCCCC
Q 001045 99 IL------N------IN-PKFIYPLPIKIPVLIDGCEVVLVGA-NHCPGAVQFLFKVPGRNGGFERYVHTGDFRF 159 (1176)
Q Consensus 99 ~l------~------~~-~~~i~~l~~~~~~~i~~~~Vt~~~a-~H~pGS~~flie~~~~~G~~~~IlYTGDfr~ 159 (1176)
.. + +. ......+..++.+.+++++|+++++ ||.+|+++|+++..+. |..++++|+||+..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~i~~i~~pGHt~g~~~~~~~~~~~-~~~~~~lf~GD~~~ 177 (263)
T 1k07_A 104 GGKSDFHYANDSSTYFTQSTVDKVLHDGERVELGGTVLTAHLTPGHTRGCTTWTMKLKDH-GKQYQAVIIGSIGV 177 (263)
T ss_dssp TTTTCTTTTTCGGGCCCCCCCSEEECTTCEEEETTEEEEEEECCSSSTTCEEEEEEEEET-TEEEEEEEECCCCC
T ss_pred ccccccccCccccccCCCCCcceEeCCCCEEEECCeEEEEEECCCCCCCcEEEEEecccC-CceeEEEEECCccc
Confidence 32 1 11 1124567888999999999999887 7999999999987411 10027999999854
No 44
>3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase, quorum quenching; HET: C6L GOL; 0.95A {Bacillus thuringiensis serovar kurstakorganism_taxid} PDB: 3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A
Probab=99.09 E-value=5.8e-10 Score=121.91 Aligned_cols=95 Identities=15% Similarity=0.087 Sum_probs=72.0
Q ss_pred CccEEEeccCChhhhCCcccCCCCceEEeCHHHHHHHHHhhcc------CCCceEEeCCCceEEECCEEEEEEecCCCcC
Q 001045 60 FSVSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLLSQILNI------NPKFIYPLPIKIPVLIDGCEVVLVGANHCPG 133 (1176)
Q Consensus 60 ~i~avfITHaH~DHiggL~~l~~~~pIY~s~~T~~ll~~~l~~------~~~~i~~l~~~~~~~i~~~~Vt~~~a~H~pG 133 (1176)
+|++|||||+|.||++|++.+. +.+||+++.+.+.+.....+ ....+..+ .+....+++++|...| ||.+|
T Consensus 100 ~I~~VilTH~H~DH~gg~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~p-GHt~g 176 (254)
T 3dha_A 100 DLLYIISSHLHFDHAGGNGAFT-NTPIIVQRTEYEAALHREEYMKECILPHLNYKII-EGDYEVVPGVQLLYTP-GHSPG 176 (254)
T ss_dssp GCSEEECSCCSHHHHTTGGGCS-SSCEEEEHHHHHHHHHCTTSCGGGSCTTSCEEEE-CSSEEEETTEEEEECC-SSSTT
T ss_pred HCCEEEcCCChhhcCCChHHCC-CCEEEECHHHHHHhhccccccccccCcccceEEe-cCCccccCCEEEEECC-CCCCC
Confidence 3899999999999999998764 78999999999887654221 11122333 3556667887777665 89999
Q ss_pred ceEEEEEEcCCCCcccEEEEECCCCCcc
Q 001045 134 AVQFLFKVPGRNGGFERYVHTGDFRFCK 161 (1176)
Q Consensus 134 S~~flie~~~~~G~~~~IlYTGDfr~~~ 161 (1176)
+++|+++..+ + ++++||||+-+..
T Consensus 177 ~~~~~~~~~~--~--~~vl~~GD~~~~~ 200 (254)
T 3dha_A 177 HQSLFIETEQ--S--GSVLLTIDASYTK 200 (254)
T ss_dssp CEEEEEEETT--T--EEEEEEETTCSSH
T ss_pred CEEEEEEeCC--C--CEEEEEecccchh
Confidence 9999999853 2 6899999987654
No 45
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=99.08 E-value=1.1e-10 Score=136.37 Aligned_cols=114 Identities=13% Similarity=0.133 Sum_probs=93.0
Q ss_pred CCCeeEeCCccEEEecCCc--------------CCCCccEEEeccCChhhhCCcccCC---CCceEEeCHHHHHHHHHhh
Q 001045 38 FPPSKHVPNTRFLIDAFRY--------------AADFSVSYFLSHFHSDHYTGLSPSW---SKGIIFCSEITSRLLSQIL 100 (1176)
Q Consensus 38 ~p~~~~ipg~~~liD~~~~--------------~~~~i~avfITHaH~DHiggL~~l~---~~~pIY~s~~T~~ll~~~l 100 (1176)
..++.+..+..++||++.. ...++++||+||.|.||++|++.+. .+.+||+++.+...+...+
T Consensus 35 ~n~~li~~~~~iliD~G~~~~~~~~~~~l~~~~~~~~i~~iiiTH~H~DH~gg~~~l~~~~~~~~v~~~~~~~~~~~~~~ 114 (402)
T 1e5d_A 35 YNAYLVEDEKTTLFDTVKAEYKGELLCGIASVIDPKKIDYLVIQHLELDHAGALPALIEACQPEKIFTSSLGQKAMESHF 114 (402)
T ss_dssp EEEEEECSSSCEEECCCCGGGHHHHHHHHHTTSCGGGCCEEEECCCSHHHHTTHHHHHHHHCCSEEEEEHHHHHHHHHHH
T ss_pred eEEEEEECCCEEEEeCCCCccHHHHHHHHHHhCCcccCCEEEeCCCCccccccHHHHHHHCCCCEEEEChHHHHHHHHHh
Confidence 3456666667899999843 1357899999999999999998753 3689999999999998877
Q ss_pred ccCCCceEEeCCCceEEECCEEEEEEec--CCCcCceEEEEEEcCCCCcccEEEEECCCC
Q 001045 101 NINPKFIYPLPIKIPVLIDGCEVVLVGA--NHCPGAVQFLFKVPGRNGGFERYVHTGDFR 158 (1176)
Q Consensus 101 ~~~~~~i~~l~~~~~~~i~~~~Vt~~~a--~H~pGS~~flie~~~~~G~~~~IlYTGDfr 158 (1176)
+.+...+..+..|+.+.+++++|+++++ +|.||++++++. + .+++||||+.
T Consensus 115 ~~~~~~~~~~~~g~~~~~g~~~~~~~~~p~gH~~~~~~~~~~--~-----~~~l~~GD~~ 167 (402)
T 1e5d_A 115 HYKDWPVQVVKHGETLSLGKRTVTFYETRMLHWPDSMVSWFA--D-----EKVLISNDIF 167 (402)
T ss_dssp CCSSCCEEEECTTCEEECSSCEEEEEECTTSSSTTCEEEEET--T-----TTEEEEETTT
T ss_pred CCCCCceEEcCCCCEEEECCCEEEEEeCCCCCCCCcEEEEEC--C-----CCEEEecccc
Confidence 7644457788999999999999999988 599999998773 2 4799999984
No 46
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=99.06 E-value=3.5e-10 Score=131.93 Aligned_cols=115 Identities=14% Similarity=0.090 Sum_probs=93.0
Q ss_pred CCCCeeEeCCccEEEecCCc--------------CCCCccEEEeccCChhhhCCcccC---CCCceEEeCHHHHHHHHHh
Q 001045 37 TFPPSKHVPNTRFLIDAFRY--------------AADFSVSYFLSHFHSDHYTGLSPS---WSKGIIFCSEITSRLLSQI 99 (1176)
Q Consensus 37 ~~p~~~~ipg~~~liD~~~~--------------~~~~i~avfITHaH~DHiggL~~l---~~~~pIY~s~~T~~ll~~~ 99 (1176)
...++.+..+..++||++.. ...++++||+||.|.||++|++.+ +.+.+||+++.+...+...
T Consensus 35 ~~n~~li~~~~~iliD~g~~~~~~~~~~~l~~~~~~~~i~~iiiTH~H~DH~gg~~~l~~~~~~~~v~~~~~~~~~l~~~ 114 (398)
T 1ycg_A 35 TYNAYLIVDDKTALVDTVYEPFKEELIAKLKQIKDPVKLDYLVVNHTESDHAGAFPAIMELCPDAHVLCTQRAFDSLKAH 114 (398)
T ss_dssp EECCEEECSSSCEEECCCCGGGHHHHHHHHHHHCSSCCCSEEEESCCSHHHHTTHHHHHHHCTTCEEEECHHHHHHHHHH
T ss_pred eEEEEEEECCCEEEEeCCCcccHHHHHHHHHHhcCcccCCEEEeCCCCcchhhhHHHHHHHCCCCEEEEcHHHHHHHHHH
Confidence 34566666666899999843 246799999999999999999875 3468999999999999887
Q ss_pred hccCCCceEEeCCCceEEECCEEEEEEec--CCCcCceEEEEEEcCCCCcccEEEEECCCC
Q 001045 100 LNINPKFIYPLPIKIPVLIDGCEVVLVGA--NHCPGAVQFLFKVPGRNGGFERYVHTGDFR 158 (1176)
Q Consensus 100 l~~~~~~i~~l~~~~~~~i~~~~Vt~~~a--~H~pGS~~flie~~~~~G~~~~IlYTGDfr 158 (1176)
++.+...+..+..|+.+.+++.+++++++ +|.+|++++++. + .+++||||+-
T Consensus 115 ~~~~~~~~~~~~~g~~~~~g~~~~~~~~~p~gH~~~~~~~~~~--~-----~~~lf~GD~~ 168 (398)
T 1ycg_A 115 YSHIDFNYTIVKTGTSVSLGKRSLTFIEAPMLHWPDSMFTYVP--E-----EALLLPNDAF 168 (398)
T ss_dssp TCSCCCEEEECCTTCEEECSSCEEEEEECTTSSSTTCEEEEET--T-----TTEEEEETTT
T ss_pred hCCCCcceEEeCCCCEEeeCCcEEEEEeCCCCCCCCcEEEEEC--C-----CcEEEecccc
Confidence 76544457788899999999999999876 599999998763 2 4799999984
No 47
>3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance, hydrolase; 1.65A {Chryseobacterium indologenes} SCOP: d.157.1.0
Probab=99.05 E-value=2.8e-10 Score=121.46 Aligned_cols=113 Identities=18% Similarity=0.040 Sum_probs=89.9
Q ss_pred CCCeeE-eCCccEEEecCCc--------------CCCCccEEEeccCChhhhCCcccCC-CCceEEeCHHHHHHHHHhhc
Q 001045 38 FPPSKH-VPNTRFLIDAFRY--------------AADFSVSYFLSHFHSDHYTGLSPSW-SKGIIFCSEITSRLLSQILN 101 (1176)
Q Consensus 38 ~p~~~~-ipg~~~liD~~~~--------------~~~~i~avfITHaH~DHiggL~~l~-~~~pIY~s~~T~~ll~~~l~ 101 (1176)
..++.+ ..+..++||++.. ...++++||+||+|.||++|++.+. .+.+||+++.+.+.+...-.
T Consensus 31 ~n~~li~~~~~~iLiD~G~~~~~~~~~~~~l~~~~~~~i~~ii~TH~H~DH~gg~~~l~~~~~~v~~~~~~~~~~~~~~~ 110 (219)
T 3l6n_A 31 ANSMYLVTKKGVVLFDVPWEKVQYQSLMDTIKKRHNLPVVAVFATHSHDDRAGDLSFFNNKGIKTYATAKTNEFLKKDGK 110 (219)
T ss_dssp EEEEEEEETTEEEEESCCSSGGGHHHHHHHHHHHHSCCEEEEECSSSSTTTTCCTHHHHHTTCEEEECHHHHHHHHHTTC
T ss_pred ceEEEEEeCCEEEEEeCCCChHHHHHHHHHHHHhcCCceeEEEecCCCcccccCHHHHHhCCCEEEEcHHHHHHHHhcCC
Confidence 345666 5778899999832 1257999999999999999998753 27899999999998876422
Q ss_pred cCCCceEEeCCCceEEECCEEEEEEe--cCCCcCceEEEEEEcCCCCcccEEEEECCCCC
Q 001045 102 INPKFIYPLPIKIPVLIDGCEVVLVG--ANHCPGAVQFLFKVPGRNGGFERYVHTGDFRF 159 (1176)
Q Consensus 102 ~~~~~i~~l~~~~~~~i~~~~Vt~~~--a~H~pGS~~flie~~~~~G~~~~IlYTGDfr~ 159 (1176)
......+..++.+.+++++|+++. .+|.+|+++|++.. .+++||||+-+
T Consensus 111 --~~~~~~~~~g~~~~~g~~~i~~~~~~pgHt~g~~~~~~~~-------~~~lf~GD~~~ 161 (219)
T 3l6n_A 111 --ATSTEIIKTGKPYRIGGEEFVVDFLGEGHTADNVVVWFPK-------YNVLDGGCLVK 161 (219)
T ss_dssp --CCCSEECCTTSEEEETTEEEEEECCCCSSSSSCCEEEETT-------TTEEEEETTSC
T ss_pred --CCCcEecCCCCEEEECCEEEEEEeCCCCCCCCCEEEEECC-------CCEEEECCeee
Confidence 223567888999999999999997 59999999999852 47999999754
No 48
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=99.04 E-value=4.4e-10 Score=131.32 Aligned_cols=114 Identities=14% Similarity=0.117 Sum_probs=92.1
Q ss_pred CCCeeEe-CCccEEEecCCc-----------------CCCCccEEEeccCChhhhCCcccCC---CCceEEeCHHHHHHH
Q 001045 38 FPPSKHV-PNTRFLIDAFRY-----------------AADFSVSYFLSHFHSDHYTGLSPSW---SKGIIFCSEITSRLL 96 (1176)
Q Consensus 38 ~p~~~~i-pg~~~liD~~~~-----------------~~~~i~avfITHaH~DHiggL~~l~---~~~pIY~s~~T~~ll 96 (1176)
..++.+. .+..++||++.. ...++++||+||.|.||++|++.+. .+.+||+++.+.+.+
T Consensus 35 ~n~~li~~~~~~iLiD~g~~~~~~~~~~~l~~~~~~~~~~~i~~ii~TH~H~DH~gg~~~l~~~~p~~~v~~~~~~~~~~ 114 (404)
T 2ohh_A 35 YNAYLVCGDEGVALIDNSYPGTFDELMARVEDALQQVGMERVDYIIQNHVEKDHSGVLVELHRRFPEAPIYCTEVAVKGL 114 (404)
T ss_dssp ECCEEEECSSCEEEECCCCTTCHHHHHHHHHHHHHHHTCCCCCEEECSCCSHHHHTTHHHHHHHSTTCCEEECHHHHHHH
T ss_pred EEEEEEEeCCcEEEEeCCCCccHHHHHHHHHHHhccCCccCCCEEEeCCCCCcccchHHHHHHHCCCCEEEECHHHHHHH
Confidence 4566664 455899999843 3467999999999999999998753 468999999999998
Q ss_pred HHhhccC-CCceEEeCCCceEEECCEEEEEEec--CCCcCceEEEEEEcCCCCcccEEEEECCCC
Q 001045 97 SQILNIN-PKFIYPLPIKIPVLIDGCEVVLVGA--NHCPGAVQFLFKVPGRNGGFERYVHTGDFR 158 (1176)
Q Consensus 97 ~~~l~~~-~~~i~~l~~~~~~~i~~~~Vt~~~a--~H~pGS~~flie~~~~~G~~~~IlYTGDfr 158 (1176)
...++.+ ...+..+..|+.+.+++.+|+++++ ||.+|+++|++.. .+++||||+-
T Consensus 115 ~~~~~~~~~~~~~~~~~g~~~~~g~~~i~~~~~p~gH~~~~~~~~~~~-------~~~lf~GD~~ 172 (404)
T 2ohh_A 115 LKHYPSLREAEFMTVKTGDVLDLGGKTLTFLETPLLHWPDSMFTLLDE-------DGILFSNDAF 172 (404)
T ss_dssp HHHCGGGGGSCEEECCTTCEEECSSCEEEEEECTTSSSTTCEEEEEET-------TTEEECTTTT
T ss_pred HHHhcccccCCceEcCCCCEEEECCEEEEEEeCCCCCCCCceEEEECC-------CcEEEecCcc
Confidence 8766543 2346788889999999999999998 5999999998853 4699999974
No 49
>3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone signal, metallo-beta-lactamase FOL conserved hypothetical protein; HET: EPE; 1.80A {Sulfolobus tokodaii}
Probab=99.03 E-value=2.3e-10 Score=125.36 Aligned_cols=120 Identities=17% Similarity=0.148 Sum_probs=88.8
Q ss_pred CCCCCCCCCeeEeC-CccEEEecCCcC-------CCCccEEEeccCChhhhCCcccCCC--CceEEeCHHHHHHHHH---
Q 001045 32 PPIPRTFPPSKHVP-NTRFLIDAFRYA-------ADFSVSYFLSHFHSDHYTGLSPSWS--KGIIFCSEITSRLLSQ--- 98 (1176)
Q Consensus 32 p~~~r~~p~~~~ip-g~~~liD~~~~~-------~~~i~avfITHaH~DHiggL~~l~~--~~pIY~s~~T~~ll~~--- 98 (1176)
+...+...++.+.. +..++||++... ..++++||+||.|.||++|++.+.. +.+||+++.+...+..
T Consensus 14 ~g~~~~~~~~li~~~~~~iLiD~G~~~~~~~l~~~~~i~~vi~TH~H~DH~gg~~~l~~~~~~~i~~~~~~~~~l~~~~~ 93 (261)
T 3adr_A 14 VEFPEIATVYVMCGEKLTVMIDAGVSNSIADFSFLDKLDYIVLTHLHIDHIGLLPELLQVYKAKVLVKSGFKKYLTSEDG 93 (261)
T ss_dssp TTCGGGSEEEEEECSSCEEEECCCCTTCCCCCTTCSCCCEEECSCCSGGGTTTHHHHHHHSCCEEEEETTCTHHHHSHHH
T ss_pred CCCCCceEEEEEEcCCcEEEEeCCCCCChhhcCCCCCCcEEEECCCCccccCCHHHHHHHhCCeEEECHHHHHHhcCchh
Confidence 33445666777754 778999998432 2578999999999999999986532 6899999877655431
Q ss_pred -----------------hhcc-----CCCceEEeCCCceEEECCEEEEEEec-CCCcCceEEEEEEcCCCCcccEEEEEC
Q 001045 99 -----------------ILNI-----NPKFIYPLPIKIPVLIDGCEVVLVGA-NHCPGAVQFLFKVPGRNGGFERYVHTG 155 (1176)
Q Consensus 99 -----------------~l~~-----~~~~i~~l~~~~~~~i~~~~Vt~~~a-~H~pGS~~flie~~~~~G~~~~IlYTG 155 (1176)
.++. ....+..+..++.+.+++++|+++++ ||.+|+++|.+ .+++|||
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~i~~~~~pGHt~~~~~~~~---------~~~lf~G 164 (261)
T 3adr_A 94 LKKLNESAEKVLGDLYYVYGGLEKKLDQDKVIEVEGNEEFDLGGYRMRLIYTPGHARHHMSVLV---------DDFLFTG 164 (261)
T ss_dssp HHHHHHHHHHHHTHHHHHHCCCCSCCCGGGEEEECSCCEEECSSSEEEEEECTTSCTTCEEEEE---------TTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCCccceEecCCCCEEEECCEEEEEEECCCCCCccEEEEE---------CCEEEEc
Confidence 1111 11235678889999999999999997 59999999853 2599999
Q ss_pred CCCCc
Q 001045 156 DFRFC 160 (1176)
Q Consensus 156 Dfr~~ 160 (1176)
|+.+.
T Consensus 165 D~~~~ 169 (261)
T 3adr_A 165 DSAGA 169 (261)
T ss_dssp TSSCE
T ss_pred Ccccc
Confidence 98554
No 50
>3hnn_A Putative diflavin flavoprotein A 5; PSI-2, protein structure initiative, northeast structural GE consortium, NESG, NSR435A, DFA5, electron transport; 1.80A {Nostoc SP} PDB: 4fek_A
Probab=99.01 E-value=2.2e-10 Score=126.48 Aligned_cols=112 Identities=13% Similarity=0.055 Sum_probs=90.4
Q ss_pred CCeeEeCCccEEEecCCc--------------CCCCccEEEeccCChhhhCCcccCC---CCceEEeCHHHHHHHHHhhc
Q 001045 39 PPSKHVPNTRFLIDAFRY--------------AADFSVSYFLSHFHSDHYTGLSPSW---SKGIIFCSEITSRLLSQILN 101 (1176)
Q Consensus 39 p~~~~ipg~~~liD~~~~--------------~~~~i~avfITHaH~DHiggL~~l~---~~~pIY~s~~T~~ll~~~l~ 101 (1176)
.++.+..+..++||++.. ...+|++||+||.|.||+||++.+. .+.+||+++.+...+...++
T Consensus 44 N~yli~~~~~iLID~G~~~~~~~~~~~l~~~~~~~~i~~IilTH~H~DH~gg~~~l~~~~~~~~v~~~~~~~~~l~~~~~ 123 (262)
T 3hnn_A 44 NSYVIEGDKTAIIDPPVESFMKIYLEALQQTVNLKKLDYVILGHFSPNRIPTFKALLELAPQITFVCSLPAAGDLRAAFP 123 (262)
T ss_dssp EEEEEESSSEEEECCCCHHHHHHHHHHHHHHSCGGGEEEEECSSCCGGGHHHHHHHHHHCTTCEEEECHHHHHHHHHHSS
T ss_pred EEEEEECCCEEEEECCCcchHHHHHHHHHHhCChhhCCEEEECCCCcchhchHHHHHHHCCCCEEEECHHHHHHHHHHhC
Confidence 456665678899999842 1257999999999999999998643 47899999999999987766
Q ss_pred cCCCceEEeCCCceEEEC-CEEEEEEec-C-CCcCceEEEEEEcCCCCcccEEEEECCC
Q 001045 102 INPKFIYPLPIKIPVLID-GCEVVLVGA-N-HCPGAVQFLFKVPGRNGGFERYVHTGDF 157 (1176)
Q Consensus 102 ~~~~~i~~l~~~~~~~i~-~~~Vt~~~a-~-H~pGS~~flie~~~~~G~~~~IlYTGDf 157 (1176)
........+..|+.+.++ +.+++++++ + |.||++++++.. .+++||||+
T Consensus 124 ~~~~~~~~~~~g~~l~lg~~~~~~~i~tpg~Ht~g~~~~~~~~-------~~~lfsGD~ 175 (262)
T 3hnn_A 124 DDNLNILPMRGKETLDLGKGHVLKFLPIPSPRWPAGLCTYDVQ-------TQILYTDKI 175 (262)
T ss_dssp SSCCEEEECCSSCEEECSTTCEEEEEECCCSSCTTCEEEEETT-------TTEEEEETT
T ss_pred CCCCceEEeCCCCEEEcCCCcEEEEEECCCCCCCCeeEEEeCC-------CCEEEEeec
Confidence 544457788999999998 888888877 4 899999887642 479999998
No 51
>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica}
Probab=98.99 E-value=1.7e-10 Score=122.50 Aligned_cols=116 Identities=19% Similarity=0.094 Sum_probs=86.7
Q ss_pred CCCeeEe---CCccEEEecCCcC----------CCCccEEEeccCChhhhCCcccCCC--CceEEeCHHHHHHHHHh---
Q 001045 38 FPPSKHV---PNTRFLIDAFRYA----------ADFSVSYFLSHFHSDHYTGLSPSWS--KGIIFCSEITSRLLSQI--- 99 (1176)
Q Consensus 38 ~p~~~~i---pg~~~liD~~~~~----------~~~i~avfITHaH~DHiggL~~l~~--~~pIY~s~~T~~ll~~~--- 99 (1176)
..++.+. .+..++||++... ..++++||+||+|.||++|++.+.. +.+||+++.+.+.+...
T Consensus 13 ~n~~li~~~~~~~~iLiD~G~~~~~l~~~l~~~g~~i~~ii~TH~H~DH~gg~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 92 (210)
T 2xf4_A 13 QNCSLIWCEQTRLAALVDPGGDAEKIKQEVDASGVTLMQILLTHGHLDHVGAASELAQHYGVPVIGPEKEDEFWLQGLPA 92 (210)
T ss_dssp EEEEEEECTTTCEEEEECCCSCHHHHHHHHHHHTCEEEEEECSCSCHHHHTTHHHHHHHHTCCEECCCGGGHHHHHTHHH
T ss_pred cEEEEEEecCCCcEEEEcCCCCHHHHHHHHHHcCCceeEEEECCCChhhhcCHHHHHHHcCCcEEEecchHHHHhccchh
Confidence 4466663 4678999998321 1358999999999999999987542 67999999888776542
Q ss_pred ----hccCC----CceEEeCCCceEEECCEEEEEEec-CCCcCceEEEEEEcCCCCcccEEEEECCCCCc
Q 001045 100 ----LNINP----KFIYPLPIKIPVLIDGCEVVLVGA-NHCPGAVQFLFKVPGRNGGFERYVHTGDFRFC 160 (1176)
Q Consensus 100 ----l~~~~----~~i~~l~~~~~~~i~~~~Vt~~~a-~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~ 160 (1176)
++.+. .....+..++.+.+++.+|+++++ ||.+|+++|+++ + .+++||||+-+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~i~~~~~pgHt~g~~~~~~~--~-----~~~lf~GD~~~~ 155 (210)
T 2xf4_A 93 QSRMFGLDECQPLTPDRWLNDGDRVSVGNVTLQVLHCPGHTPGHVVFFDE--Q-----SQLLISGDVIFK 155 (210)
T ss_dssp HHHHTTCCCCCCCCCSBCCCTTCEEEETTEEEEEEECCSSSTTCEEEEET--T-----TTEEEEETSEET
T ss_pred hhhhcCCcccCCCCCceEECCCCEEEECCeEEEEEECCCCCCCcEEEEeC--C-----CCEEEECCEecc
Confidence 23211 123457788899999999999987 789999999874 2 479999998544
No 52
>1ztc_A Hypothetical protein TM0894; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, hydrolase; HET: MSE; 2.10A {Thermotoga maritima} SCOP: d.157.1.11
Probab=98.99 E-value=6.1e-10 Score=119.71 Aligned_cols=117 Identities=16% Similarity=0.153 Sum_probs=84.4
Q ss_pred CCCCCeeE-eCCccEEEecCCc---------------CCCCccEEEeccCChhhhCCcccCCCCceEEeCHHHHHHHHHh
Q 001045 36 RTFPPSKH-VPNTRFLIDAFRY---------------AADFSVSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLLSQI 99 (1176)
Q Consensus 36 r~~p~~~~-ipg~~~liD~~~~---------------~~~~i~avfITHaH~DHiggL~~l~~~~pIY~s~~T~~ll~~~ 99 (1176)
....++.+ .++..++||++.. ...+|++||+||+|.||++|++.+. +.+||+++.. +...
T Consensus 33 ~~~n~~li~~~~~~iLID~G~~~~~~~l~~~l~~~g~~~~~i~~ViiTH~H~DH~gg~~~~~-~~~v~~~~~~---~~~~ 108 (221)
T 1ztc_A 33 HFSTVVYLEHKDRRIIIDPGNLSSMDELEEKFSELGISPDDITDVLFTHVHLDHIFNSVLFE-NATFYVHEVY---KTKN 108 (221)
T ss_dssp CBCCEEEEEETTEEEEECCCCGGGHHHHHHHHHHHTCCGGGCCEEECSCCCHHHHGGGGGCT-TCEEEEEGGG---GGSC
T ss_pred CceEEEEEEeCCeEEEEECCCCcchHHHHHHHHHcCCCHHHCcEEEEcCCccccCCchhhCC-CCEEEEeHHH---hhhh
Confidence 55667777 5778899999832 1236899999999999999998765 7899999872 1110
Q ss_pred ---hc---------c--CCCceEEeCCCceEEECCEEEEEEecCCCcCceEEEEEEcCCCCcccEEEEECCCCCcc
Q 001045 100 ---LN---------I--NPKFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFCK 161 (1176)
Q Consensus 100 ---l~---------~--~~~~i~~l~~~~~~~i~~~~Vt~~~a~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~~ 161 (1176)
++ . ....+..++.++.+..++++|...| +|.+|+++|+++.++ + ++++||||+.+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~v~~~p-GHt~g~~~~~~~~~~--~--~~vlftGD~~~~~ 179 (221)
T 1ztc_A 109 YLSFGTIVGRIYSKVISSWKNVVLLKGEESLFDEKVKVFHTP-WHAREHLSFLLDTEN--A--GRVLITGDITPNR 179 (221)
T ss_dssp GGGGCHHHHHHHHHHHHTCCSEEEECSCCEETTTTEEEEECC-SSSTTCEEEEEEETT--T--EEEEECGGGSCSH
T ss_pred hhhhccchhhhhhhccccccceEEeCCCCEEECCeEEEEEcC-CCCcccEEEEEEcCC--C--CeEEEEeCccccc
Confidence 00 0 0123567777776642368888777 999999999999853 1 3899999987543
No 53
>3esh_A Protein similar to metal-dependent hydrolase; structural genomics, PSI-2, protein structure initiative; 2.50A {Staphylococcus aureus subsp}
Probab=98.96 E-value=1e-09 Score=122.10 Aligned_cols=118 Identities=16% Similarity=0.095 Sum_probs=82.3
Q ss_pred CCCCCeeE-eCCccEEEecCCcC-----------------------------CCCccEEEeccCChhhhCCcccCC----
Q 001045 36 RTFPPSKH-VPNTRFLIDAFRYA-----------------------------ADFSVSYFLSHFHSDHYTGLSPSW---- 81 (1176)
Q Consensus 36 r~~p~~~~-ipg~~~liD~~~~~-----------------------------~~~i~avfITHaH~DHiggL~~l~---- 81 (1176)
-.+.++.+ .++..++||++... ..+|++|||||+|.||+||++.+.
T Consensus 46 ~~~n~~lI~~~~~~iLID~G~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~Id~IllTH~H~DHigg~~~l~~~~~ 125 (280)
T 3esh_A 46 LPTHPILIQTAQYNLIIDAGIGNGKLSEKQLRNFGVDEESHIIADLANYNLTPKDIDYVLMTHMHFDHAAGLTDQAGHAI 125 (280)
T ss_dssp EECCCEEEECSSCEEESCCTTCSSCSCHHHHHHTTCSSCCCHHHHHHTTTCCTTSCCEEECSCCCHHHHGGGSCTTSCCS
T ss_pred EeEEEEEEEECCEEEEEECCCCCcccccccccccCCcccchHHHHHHHcCCCHHHCCEEEeCCCcccccCcccccccccC
Confidence 34567777 67889999998321 136889999999999999998654
Q ss_pred -CCceEEeCHHHHHHHHHhhc-----cC-------CCceEEeCCCceEEE-CCEEEEEEe-cCCCcCceEEEEEEcCCCC
Q 001045 82 -SKGIIFCSEITSRLLSQILN-----IN-------PKFIYPLPIKIPVLI-DGCEVVLVG-ANHCPGAVQFLFKVPGRNG 146 (1176)
Q Consensus 82 -~~~pIY~s~~T~~ll~~~l~-----~~-------~~~i~~l~~~~~~~i-~~~~Vt~~~-a~H~pGS~~flie~~~~~G 146 (1176)
.+.+||+++.+...+..... +. ...+..++. ...+ +++++ ++ .||.||+++|+++.++
T Consensus 126 fp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~gi~~--~~~pGHt~g~~~~~i~~~~--- 198 (280)
T 3esh_A 126 FENAIHVVQQDEWHEFIAPNIRSKSTYWDKNKGDYSNKLILFEK--HFEPVPGIKM--QHSGGHSFGHTIITIESQG--- 198 (280)
T ss_dssp STTCEEEEEHHHHHHHHSCCTTGGGTSCGGGCCGGGGGEEEESS--EECSSTTEEE--EECCSSSTTCEEEEEEETT---
T ss_pred CCCCEEEECHHHHHHhhCcccccccchhhhhhhhhhheEEEeCC--CCeEcCCEEE--EEcCCCCcccEEEEEEECC---
Confidence 37899999999888764210 00 011233322 2233 24555 44 4899999999999854
Q ss_pred cccEEEEECCCCCccc
Q 001045 147 GFERYVHTGDFRFCKT 162 (1176)
Q Consensus 147 ~~~~IlYTGDfr~~~~ 162 (1176)
++++||||+-+...
T Consensus 199 --~~vlftGD~~~~~~ 212 (280)
T 3esh_A 199 --DKAVHMGDIFPTTA 212 (280)
T ss_dssp --EEEEECGGGSCSGG
T ss_pred --cEEEEEEccCCchh
Confidence 68999999876543
No 54
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1
Probab=98.96 E-value=1.2e-09 Score=117.23 Aligned_cols=114 Identities=14% Similarity=0.082 Sum_probs=88.2
Q ss_pred CCCeeE-eCCccEEEecCCcC--------------CCCccEEEeccCChhhhCCcccCC-CCceEEeCHHHHHHHHHhhc
Q 001045 38 FPPSKH-VPNTRFLIDAFRYA--------------ADFSVSYFLSHFHSDHYTGLSPSW-SKGIIFCSEITSRLLSQILN 101 (1176)
Q Consensus 38 ~p~~~~-ipg~~~liD~~~~~--------------~~~i~avfITHaH~DHiggL~~l~-~~~pIY~s~~T~~ll~~~l~ 101 (1176)
..++.+ .++..++||++... ..++++||+||.|.||++|++.+. .+.+||+++.+.+.+.....
T Consensus 27 ~n~~li~~~~~~iLiD~G~~~~~~~~~~~~l~~~~g~~i~~vi~TH~H~DH~gg~~~~~~~~~~v~~~~~~~~~~~~~~~ 106 (223)
T 1m2x_A 27 ANAVYLVTDKGVVVIDCPWGEDKFKSFTDEIYKKHGKKVIMNIATHSHDDRAGGLEYFGKIGAKTYSTKMTDSILAKENK 106 (223)
T ss_dssp EEEEEEEETTEEEEESCCSSGGGHHHHHHHHHHHHCCCEEEEECSSSSTTTTTTHHHHHHTTCEEEEEHHHHHHHHHTTC
T ss_pred ccEEEEEeCCEEEEEeCCCChhHHHHHHHHHHHHhCCCeEEEEeccCCccccCchhhHhhCCCeEEEcHHHHHHHHhcCc
Confidence 445666 46788999998310 247899999999999999998654 36899999999988875432
Q ss_pred cCCCceEEeCCCceEEECCEEEEEEe--cCCCcCceEEEEEEcCCCCcccEEEEECCCCCc
Q 001045 102 INPKFIYPLPIKIPVLIDGCEVVLVG--ANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFC 160 (1176)
Q Consensus 102 ~~~~~i~~l~~~~~~~i~~~~Vt~~~--a~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~ 160 (1176)
.. ....+..++.+.+++.+|+++. .+|.+|+++|++. + .+++||||+-..
T Consensus 107 ~~--~~~~~~~g~~~~~g~~~i~~~~~~pgHt~~~~~~~~~--~-----~~~lf~GD~~~~ 158 (223)
T 1m2x_A 107 PR--AQYTFDNNKSFKVGKSEFQVYYPGKGHTADNVVVWFP--K-----EKVLVGGCIIKS 158 (223)
T ss_dssp CC--CSEEESSCEEEEETTEEEEEECCCSSSSSSCCEEEET--T-----TTEEEEETTSCC
T ss_pred cC--CceecCCCceEEECCEEEEEEecCCCCCCCCEEEEEC--C-----CCEEEEeccccc
Confidence 11 1356788889999999999984 5999999999884 2 479999996543
No 55
>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus}
Probab=98.94 E-value=7.9e-10 Score=124.84 Aligned_cols=119 Identities=18% Similarity=0.122 Sum_probs=88.6
Q ss_pred CCCCCCeeE-eCCccEEEecCCcC-----------------CCCccEEEeccCChhhhCCcccCCC-CceEEeCHHHHHH
Q 001045 35 PRTFPPSKH-VPNTRFLIDAFRYA-----------------ADFSVSYFLSHFHSDHYTGLSPSWS-KGIIFCSEITSRL 95 (1176)
Q Consensus 35 ~r~~p~~~~-ipg~~~liD~~~~~-----------------~~~i~avfITHaH~DHiggL~~l~~-~~pIY~s~~T~~l 95 (1176)
.....++.+ -++..++||++... ..+|++||+||.|.||+||+..+.. +.+||+++.+...
T Consensus 19 ~~~~n~~li~~~~~~ilID~G~~~~~~~~~l~~~l~~~g~~~~~i~~Vi~TH~H~DH~gg~~~l~~~~~~v~~~~~~~~~ 98 (317)
T 2zo4_A 19 LKTVNLYLLQGAGEVALVDTALGTRAARGALELHLAELGLCFQDVKTILLTHHHPDHYGLSGFFEGLGARVFLHEEEFAR 98 (317)
T ss_dssp TCEEEEEEEEETTEEEEECCCCSSHHHHHHHHHHHHHTTCCGGGCCEEEESCCSHHHHTTHHHHHHTTCEEEEEGGGTTT
T ss_pred CCcEEEEEEEcCCceEEEECCCCCHHHHHHHHHHHHHcCCChhhcCEEEEcCCCCcccccHHHHHhCCCEEEEcHHHHHH
Confidence 345556666 45578999998321 1358999999999999999986432 6899999988776
Q ss_pred HHHhh-----------------ccC--------------------CCceEEeCCCceEEECCEEEEEEec-CCCcCceEE
Q 001045 96 LSQIL-----------------NIN--------------------PKFIYPLPIKIPVLIDGCEVVLVGA-NHCPGAVQF 137 (1176)
Q Consensus 96 l~~~l-----------------~~~--------------------~~~i~~l~~~~~~~i~~~~Vt~~~a-~H~pGS~~f 137 (1176)
+.... +.+ ......+..|+.+.+++.+++++.+ ||.+|+++|
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~gg~~~~~i~tpGHt~g~~~~ 178 (317)
T 2zo4_A 99 GHRFWREPEAFAEASWRLFLDHGTPEGALQGIRETVEKTRERVHPPQNPLPLRDGEALEVAGKRLRVLWTPGHADGHAAF 178 (317)
T ss_dssp HHHHHHCTTTSHHHHHHHHHHTTCCC-------CHHHHHHTTCCCCSSCEEECTTCEEEETTEEEEEEECCSSSTTCEEE
T ss_pred HHhhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHhcccccccCCCCCCceEECCCCEEEeCCceEEEEECCCCCcccEEE
Confidence 64321 221 1134667889999999999999998 899999999
Q ss_pred EEEEcCCCCcccEEEEECCCCCc
Q 001045 138 LFKVPGRNGGFERYVHTGDFRFC 160 (1176)
Q Consensus 138 lie~~~~~G~~~~IlYTGDfr~~ 160 (1176)
++. + .+++||||.-+.
T Consensus 179 ~~~--~-----~~~lf~GD~~~~ 194 (317)
T 2zo4_A 179 YLE--E-----EGVLLAGDALLE 194 (317)
T ss_dssp EET--T-----TTEEEEETSCCS
T ss_pred EeC--C-----CCEEEECCEecC
Confidence 863 2 479999998654
No 56
>4ax1_B Metallo-beta-lactamase AIM-1; hydrolase, antibiotic resistance, acquired B3, drug binding; 1.40A {Pseudomonas aeruginosa} PDB: 4awy_B 4awz_A 4ax0_B
Probab=98.94 E-value=2.4e-09 Score=119.63 Aligned_cols=120 Identities=17% Similarity=0.101 Sum_probs=89.4
Q ss_pred CCCeeE-eCCccEEEecCCc---------------CCCCccEEEeccCChhhhCCcccCCC--CceEEeCHHHHHHHHHh
Q 001045 38 FPPSKH-VPNTRFLIDAFRY---------------AADFSVSYFLSHFHSDHYTGLSPSWS--KGIIFCSEITSRLLSQI 99 (1176)
Q Consensus 38 ~p~~~~-ipg~~~liD~~~~---------------~~~~i~avfITHaH~DHiggL~~l~~--~~pIY~s~~T~~ll~~~ 99 (1176)
.+++.+ .++..++||++.. ...++++||+||.|.||++|++.+.. +.+||+++.+...+...
T Consensus 58 ~~~~li~~~~~~iLiD~G~~~~~~~~~~~l~~~g~~~~~i~~ii~TH~H~DH~gg~~~l~~~~~~~v~~~~~~~~~l~~~ 137 (303)
T 4ax1_B 58 ISALLVTSDAGHILVDAATPQAGPQILANIRALGFRPEDVRAIVFSHEHFDHAGSLAELQKATGAPVYARAPAIDTLKRG 137 (303)
T ss_dssp SCCEEECCTTCEEEECCBSTTCHHHHHHHHHHTTCCGGGEEEEECSCSSHHHHTTHHHHHHHHCCCEEEEHHHHHHHHHT
T ss_pred ceEEEEEeCCcEEEEECCCcccHHHHHHHHHHcCCCHHHCcEEEcCCCCccccCCHHHHHhhcCCEEEEcHHHHHHHhcc
Confidence 456666 4778899999831 11348999999999999999987542 68999999999998865
Q ss_pred hc------------c-CCCceEEeCCCceEEECCEEEEEEec-CCCcCceEEEEEEcCCCCcccEEEEECCCCC
Q 001045 100 LN------------I-NPKFIYPLPIKIPVLIDGCEVVLVGA-NHCPGAVQFLFKVPGRNGGFERYVHTGDFRF 159 (1176)
Q Consensus 100 l~------------~-~~~~i~~l~~~~~~~i~~~~Vt~~~a-~H~pGS~~flie~~~~~G~~~~IlYTGDfr~ 159 (1176)
.. . .....+.+..|+.+.+++++|+++.+ ||.+|+++|+++.... .+...+++||.-+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~v~~~~~pgHt~g~~~~~~~~~~~--~~~~~~l~gD~l~ 209 (303)
T 4ax1_B 138 LPDRTDPNFEVAEPVAPVANIVTLADDGVVSVGPLALTAVASPGHTPGGTSWTWRSCEG--DDCRQMVYADSLT 209 (303)
T ss_dssp SCCTTSTTGGGCCCCCCCSCEEEECTTCEEEETTEEEEEEECCSSSTTCEEEEEEEEET--TEEEEEEECCCCC
T ss_pred ccCccccccccccCcCCCCCcEEeCCCCEEEECCeEEEEEeCCCCCccceEEEEEecCC--CceeEEEEeCCcc
Confidence 21 0 11236788899999999999999986 6999999999987431 1122455599744
No 57
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=98.93 E-value=1.7e-09 Score=127.07 Aligned_cols=114 Identities=13% Similarity=0.178 Sum_probs=90.0
Q ss_pred CCCeeEeCCccEEEecCCc--------------CCCCccEEEeccCChhhhCCcccCC---CCceEEeCHHHHHHHHHhh
Q 001045 38 FPPSKHVPNTRFLIDAFRY--------------AADFSVSYFLSHFHSDHYTGLSPSW---SKGIIFCSEITSRLLSQIL 100 (1176)
Q Consensus 38 ~p~~~~ipg~~~liD~~~~--------------~~~~i~avfITHaH~DHiggL~~l~---~~~pIY~s~~T~~ll~~~l 100 (1176)
..++.+..+..++||++.. ...++++||+||.|.||+||++.+. .+.+||+++.+.+.+...+
T Consensus 41 ~n~~li~~~~~iLID~G~~~~~~~~~~~l~~~~~~~~i~~ii~TH~H~DH~gg~~~l~~~~~~~~v~~~~~~~~~~~~~~ 120 (414)
T 2q9u_A 41 YNSYFIDDECPTVIDSVKYPFAEEWLSRIAACCPLDKIKYVVMNHAEGDHASSLKDHYHKFTNATFVCTKKCQEHLKILY 120 (414)
T ss_dssp ECCEEECSSSCEEECCCCGGGHHHHHHHHHHHSCGGGCCEEECSCCSGGGTTTHHHHGGGSTTCEEEECHHHHHHHHHHH
T ss_pred eeEEEEECCCEEEEeCCCcccHHHHHHHHHHhcCcccCCEEEeCCCCcchhcCHHHHHHHCCCCEEEECHHHHHHHHHHh
Confidence 4566665577899999842 1257999999999999999998643 4789999999999988776
Q ss_pred ccCCCceEEeCCCceEEECCEEEEEEec--CCCcCceEEEEEEcCCCCcccEEEEECCCC
Q 001045 101 NINPKFIYPLPIKIPVLIDGCEVVLVGA--NHCPGAVQFLFKVPGRNGGFERYVHTGDFR 158 (1176)
Q Consensus 101 ~~~~~~i~~l~~~~~~~i~~~~Vt~~~a--~H~pGS~~flie~~~~~G~~~~IlYTGDfr 158 (1176)
+........+..|+.+.+++.+++++++ +|.+|++++++. + .+++||||+-
T Consensus 121 ~~~~~~~~~~~~g~~~~lg~~~~~~~~~p~gHt~~~~~~~~~--~-----~~~lf~GD~~ 173 (414)
T 2q9u_A 121 GMEKATWLIVDDKYTLKIGKRTLKFIPVPLLHWPDSTFTYCP--E-----DKILFSNDGF 173 (414)
T ss_dssp CCTTCCEEECCTTCCEECSSCEEEEEECTTSSSTTCEEEEET--T-----TTEEEEETTT
T ss_pred CCCCCeeEEeCCCCEEEECCeEEEEEeCCCCCCCCceEEEEC--C-----CeEEEEcccc
Confidence 6543356788889999999988888877 599999887653 2 4799999964
No 58
>1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic resistance, binuclear zinc, hydrolase; 1.70A {Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB: 2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A* 2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A
Probab=98.93 E-value=3e-09 Score=117.42 Aligned_cols=121 Identities=15% Similarity=0.076 Sum_probs=88.6
Q ss_pred CCCCeeE-eCCccEEEecCCc---------------CCCCccEEEeccCChhhhCCcccCC--CCceEEeCHHHHHHHHH
Q 001045 37 TFPPSKH-VPNTRFLIDAFRY---------------AADFSVSYFLSHFHSDHYTGLSPSW--SKGIIFCSEITSRLLSQ 98 (1176)
Q Consensus 37 ~~p~~~~-ipg~~~liD~~~~---------------~~~~i~avfITHaH~DHiggL~~l~--~~~pIY~s~~T~~ll~~ 98 (1176)
..+++.+ .++..++||++.. ...++++||+||.|.||++|++.+. .+.+||+++.+...+..
T Consensus 37 ~~~~~li~~~~~~iLID~G~~~~~~~l~~~l~~~g~~~~~i~~IilTH~H~DH~gg~~~l~~~~~~~v~~~~~~~~~l~~ 116 (269)
T 1sml_A 37 DLTALLVQTPDGAVLLDGGMPQMASHLLDNMKARGVTPRDLRLILLSHAHADHAGPVAELKRRTGAKVAANAESAVLLAR 116 (269)
T ss_dssp TBCCEEEEETTEEEEECCBSGGGHHHHHHHHHHTTCCGGGEEEEECSCCSHHHHTTHHHHHHHSSCEEEECHHHHHHHHT
T ss_pred CcEEEEEEeCCceEEEECCCCccHHHHHHHHHHcCCChHHCcEEEeCCCCccccCCHHHHHHhcCCeEEECHHHHHHHhc
Confidence 4557777 5777899999832 1126899999999999999998754 36899999999988875
Q ss_pred hh------c----cCC-CceEEeCCCceEEECCEEEEEEec-CCCcCceEEEEEEcCCCCcccEEEEECCCCC
Q 001045 99 IL------N----INP-KFIYPLPIKIPVLIDGCEVVLVGA-NHCPGAVQFLFKVPGRNGGFERYVHTGDFRF 159 (1176)
Q Consensus 99 ~l------~----~~~-~~i~~l~~~~~~~i~~~~Vt~~~a-~H~pGS~~flie~~~~~G~~~~IlYTGDfr~ 159 (1176)
.. + +.+ .....+..|+.+.+++++|+++++ ||.+|+++|+++.... |. .+.+++||.-+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~i~~~~~pGHt~g~~~~~~~~~~~-~~-~~~l~~gD~l~ 187 (269)
T 1sml_A 117 GGSDDLHFGDGITYPPANADRIVMDGEVITVGGIVFTAHFMAGHTPGSTAWTWTDTRN-GK-PVRIAYADSLS 187 (269)
T ss_dssp TTCSBTTTBTSSCCCCCCCSEECCTTCEEEETTEEEEEEECCSSSTTCEEEEEEEEET-TE-EEEEEECCCCC
T ss_pred CCccccccccccCCCCCCCCeEeCCCCEEEECCEEEEEEECCCCCcccEEEEEecccC-Cc-eeEEEEecccc
Confidence 32 1 111 123567788899999999999988 6999999999976321 20 13555599754
No 59
>4hl2_A Beta-lactamase NDM-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ZZ7; 1.05A {Klebsiella pneumoniae} PDB: 4hl1_A* 4h0d_A* 4gyu_A* 4gyq_A 3q6x_A* 3spu_A 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A
Probab=98.91 E-value=2.7e-10 Score=123.96 Aligned_cols=117 Identities=9% Similarity=-0.013 Sum_probs=85.4
Q ss_pred CCCCeeE-eCCccEEEecCCc--------------CCCCccEEEeccCChhhhCCcccCCC-CceEEeCHHHHHHHHHhh
Q 001045 37 TFPPSKH-VPNTRFLIDAFRY--------------AADFSVSYFLSHFHSDHYTGLSPSWS-KGIIFCSEITSRLLSQIL 100 (1176)
Q Consensus 37 ~~p~~~~-ipg~~~liD~~~~--------------~~~~i~avfITHaH~DHiggL~~l~~-~~pIY~s~~T~~ll~~~l 100 (1176)
...++.+ ..+..++||++-. ...++++||+||.|.||++|++.+.. +.+||+++.+..++....
T Consensus 47 ~~n~~li~~~~~~iLID~G~~~~~~~~l~~~l~~~~~~~i~~vi~TH~H~DH~gg~~~l~~~~~~v~~~~~~~~~~~~~~ 126 (243)
T 4hl2_A 47 ASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEG 126 (243)
T ss_dssp EEEEEEEEETTEEEEESCCSSHHHHHHHHHHHHHHTCCCEEEEEECSSSHHHHTTHHHHHHTTCEEEEEHHHHHHGGGTT
T ss_pred cceEEEEEECCcEEEEECCCCCccHHHHHHHHHHhhCCCeeEEEECCCCccccCCHHHHHhCCCeEEECHHHHHHHhccc
Confidence 3455666 4667899999821 12468999999999999999987532 789999999998877543
Q ss_pred ccCCCc------eEEeCCCceEEECCEEEEEEecCCCcCceEEEEEEcCCCCcccEEEEECCCCCc
Q 001045 101 NINPKF------IYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFC 160 (1176)
Q Consensus 101 ~~~~~~------i~~l~~~~~~~i~~~~Vt~~~a~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~ 160 (1176)
...... ...+..++.+.+++++|.....||.+|+++|+++. .+++||||+-+.
T Consensus 127 ~~~~~~~~~~~~~~~~~~g~~~~~g~~~v~~~~pGHt~g~~~~~~~~-------~~~lf~GD~~~~ 185 (243)
T 4hl2_A 127 MVAAQHSLTFAANGWVEPATAPNFGPLKVFYPGPGHTSDNITVGIDG-------TDIAFGGCLIKD 185 (243)
T ss_dssp CCCCSEEECBCTTSBBCGGGSTTCTTEEEECCCSSSSTTCCEEEETT-------TTEEECTTTCCC
T ss_pred ccccccccccccceEecCCCeEEECCEEEEeCCCCCCcCCEEEEEcC-------CCEEEEcceeee
Confidence 221111 12345677778899999444669999999999852 479999998663
No 60
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A*
Probab=98.90 E-value=1.4e-09 Score=117.61 Aligned_cols=114 Identities=13% Similarity=0.072 Sum_probs=88.4
Q ss_pred CCCeeE-eCCccEEEecCCc--------------CCCCccEEEeccCChhhhCCcccCC-CCceEEeCHHHHHHHHHhhc
Q 001045 38 FPPSKH-VPNTRFLIDAFRY--------------AADFSVSYFLSHFHSDHYTGLSPSW-SKGIIFCSEITSRLLSQILN 101 (1176)
Q Consensus 38 ~p~~~~-ipg~~~liD~~~~--------------~~~~i~avfITHaH~DHiggL~~l~-~~~pIY~s~~T~~ll~~~l~ 101 (1176)
..++.+ .++..++||++.. ...++++||+||.|.||++|++.+. .+.+||+++.+.+.+... +
T Consensus 37 ~n~~li~~~~~~iLiD~G~~~~~~~~~~~~l~~~~~~~i~~ii~TH~H~DH~gg~~~~~~~~~~v~~~~~~~~~~~~~-~ 115 (232)
T 1a7t_A 37 SNGMIVINNHQAALLDTPINDAQTEMLVNWVTDSLHAKVTTFIPNHWHGDCIGGLGYLQRKGVQSYANQMTIDLAKEK-G 115 (232)
T ss_dssp EEEEEEEETTEEEEESCCSSHHHHHHHHHHHHHHHCCEEEEEECSSSSHHHHTTHHHHHHTTCEEEEEHHHHHHHHHH-T
T ss_pred ceEEEEEeCCEEEEEeCCCCHHHHHHHHHHHHHhcCCCeEEEEeCCCCccccCCHHHHHhCCCeEEEcHHHHHHHHhc-C
Confidence 445666 4777899999832 0247899999999999999998653 367999999999887753 3
Q ss_pred cCCCceEEeCCCceEEECCEEEEEEe--cCCCcCceEEEEEEcCCCCcccEEEEECCCCCc
Q 001045 102 INPKFIYPLPIKIPVLIDGCEVVLVG--ANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFC 160 (1176)
Q Consensus 102 ~~~~~i~~l~~~~~~~i~~~~Vt~~~--a~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~ 160 (1176)
+.. ....+..++.+.+++.+|+++. .+|.+|+++|++.. .+++||||+-+.
T Consensus 116 ~~~-~~~~~~~g~~~~~g~~~i~~~~~~pgHt~g~~~~~~~~-------~~~lf~GD~~~~ 168 (232)
T 1a7t_A 116 LPV-PEHGFTDSLTVSLDGMPLQCYYLGGGHATDNIVVWLPT-------ENILFGGCMLKD 168 (232)
T ss_dssp CCC-CSEEESSEEEEEETTEEEEEECCCCSSSTTCCEEEETT-------TTEEEEETTSCC
T ss_pred CCC-CceecCCCCEEEECCeEEEEEeCCCCCCCCCEEEEECC-------CCEEEEcCcccc
Confidence 322 2456778888999999999995 59999999998842 479999998653
No 61
>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A 3kns_A 3knr_A 2bfz_A ...
Probab=98.89 E-value=1.4e-09 Score=117.14 Aligned_cols=114 Identities=11% Similarity=0.030 Sum_probs=86.8
Q ss_pred CCCeeE-eCCccEEEecCCcC--------------CCCccEEEeccCChhhhCCcccCCC-CceEEeCHHHHHHHHHhhc
Q 001045 38 FPPSKH-VPNTRFLIDAFRYA--------------ADFSVSYFLSHFHSDHYTGLSPSWS-KGIIFCSEITSRLLSQILN 101 (1176)
Q Consensus 38 ~p~~~~-ipg~~~liD~~~~~--------------~~~i~avfITHaH~DHiggL~~l~~-~~pIY~s~~T~~ll~~~l~ 101 (1176)
..++.+ .++..++||++... ..++++||+||.|.||++|++.+.. +.+||+++.+.+++.. .+
T Consensus 41 ~n~~li~~~~~~iliD~G~~~~~~~~~~~~l~~~~~~~i~~ii~TH~H~DH~gg~~~l~~~~~~v~~~~~~~~~~~~-~~ 119 (227)
T 1mqo_A 41 SNGLVLNTSKGLVLVDSSWDDKLTKELIEMVEKKFQKRVTDVIITHAHADRIGGIKTLKERGIKAHSTALTAELAKK-NG 119 (227)
T ss_dssp EEEEEEEETTEEEEESCCSSHHHHHHHHHHHHHHHTSCEEEEECCCCSHHHHTTHHHHHHHTCEEECBHHHHHHHHH-TT
T ss_pred ceEEEEEeCCeEEEEECCCChHHHHHHHHHHHHhcCCCceEEEeCCCCchhccchHHHhhCCcEEEeccchHHHHHh-cC
Confidence 345555 47778999998321 3579999999999999999986543 6899999999887764 23
Q ss_pred cCCCceEEeCCCceEEECCEEEEEE-e-cCCCcCceEEEEEEcCCCCcccEEEEECCCCCc
Q 001045 102 INPKFIYPLPIKIPVLIDGCEVVLV-G-ANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFC 160 (1176)
Q Consensus 102 ~~~~~i~~l~~~~~~~i~~~~Vt~~-~-a~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~ 160 (1176)
+.. .+..+..++.+.+++++|+++ + .||.+|+++|+++ + .+++||||+-+.
T Consensus 120 ~~~-~~~~~~~~~~~~~g~~~i~~~~~~pgHt~g~~~~~~~--~-----~~~lf~GD~~~~ 172 (227)
T 1mqo_A 120 YEE-PLGDLQTVTNLKFGNMKVETFYPGKGHTEDNIVVWLP--Q-----YNILVGGCLVKS 172 (227)
T ss_dssp CCC-CCCCBCSEEEEEETTEEEEEECCCCSSSSSCCEEEET--T-----TTEEEEETTSCC
T ss_pred CCC-CccccCCCCeeeECCEEEEEEecCCCCCCCCEEEEEC--C-----CCEEEEeeeeec
Confidence 322 234556677889999999987 3 5999999999884 2 479999998543
No 62
>2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A {Thermus thermophilus} PDB: 2zzi_A
Probab=98.89 E-value=6.9e-10 Score=117.82 Aligned_cols=114 Identities=20% Similarity=0.251 Sum_probs=81.1
Q ss_pred CCCCeeE-eCCccEEEecCCcC----------CCCccEEEeccCChhhhCCcccCCC--CceEEeCHHHHHHHHHh----
Q 001045 37 TFPPSKH-VPNTRFLIDAFRYA----------ADFSVSYFLSHFHSDHYTGLSPSWS--KGIIFCSEITSRLLSQI---- 99 (1176)
Q Consensus 37 ~~p~~~~-ipg~~~liD~~~~~----------~~~i~avfITHaH~DHiggL~~l~~--~~pIY~s~~T~~ll~~~---- 99 (1176)
...++.+ .++..++||++... ..++++||+||+|.||++|++.+.. +.+||+++.+.+.+...
T Consensus 12 ~~n~~li~~~~~~iliD~G~~~~~l~~~l~~~g~~i~~vilTH~H~DH~gg~~~l~~~~~~~v~~~~~~~~~~~~~~~~~ 91 (207)
T 2zwr_A 12 QENAYLVETGEGPVLIDPGDEPEKLLALFQTTGLIPLAILLTHAHFDHVGAVAPLVEALDLPVYLHPLDLPLYEGADLAA 91 (207)
T ss_dssp TEEEEEEEETTEEEEECCCSCHHHHHHHHHHHTCCCSCEECSCCCGGGTTTHHHHHHHHCCCEEECGGGHHHHHTHHHHH
T ss_pred ccEEEEEEeCCcEEEEeCCCCHHHHHHHHHHcCCcccEEEECCCChHHHccHHHHHHHhCCcEEECHHHHHHHhCchhhh
Confidence 4556777 56778999998321 1358999999999999999987543 68999999999888743
Q ss_pred --hccCCC----ceEEeCCCceEEECCEEEEEEecCCCcCceEEEEEEcCCCCcccEEEEECCCCCc
Q 001045 100 --LNINPK----FIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFC 160 (1176)
Q Consensus 100 --l~~~~~----~i~~l~~~~~~~i~~~~Vt~~~a~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~ 160 (1176)
++.... ....+..|+.+. ++++...| ||.+|+++|+++ + .+++||||+-+.
T Consensus 92 ~~~g~~~~~~~~~~~~~~~g~~i~--~~~~~~~p-GHt~g~~~~~~~--~-----~~~lf~GD~~~~ 148 (207)
T 2zwr_A 92 RAWGLAIPKPPLPVRPLEEGMRLF--GFQVLHLP-GHSPGHVAFYDP--E-----GAQVFSGDLLFR 148 (207)
T ss_dssp HHTTCCCCCCCSCCEECCTTCEET--TEEEEECC-SSSTTCEEEEET--T-----TTEEEEETSEET
T ss_pred hhcCCCCCcCCCCceEeCCCCEEE--EEEEEeCC-CCCCCcEEEEEC--C-----CCEEEEecccCC
Confidence 232111 234566666554 55555433 799999999985 2 479999998543
No 63
>3aj3_A MLR6805 protein, 4-pyridoxolactonase; Zn-protein, metallo-beta-lactamase, hydrolase; 1.58A {Mesorhizobium loti} PDB: 3aj0_A
Probab=98.88 E-value=3.5e-09 Score=116.96 Aligned_cols=116 Identities=17% Similarity=0.106 Sum_probs=82.0
Q ss_pred CCCeeE-eCCccEEEecCCcC------------------------------CCCccEEEeccCChhhhCCcccCCCCceE
Q 001045 38 FPPSKH-VPNTRFLIDAFRYA------------------------------ADFSVSYFLSHFHSDHYTGLSPSWSKGII 86 (1176)
Q Consensus 38 ~p~~~~-ipg~~~liD~~~~~------------------------------~~~i~avfITHaH~DHiggL~~l~~~~pI 86 (1176)
..++.+ .++..+|||++... ..+|++|||||+|.||++|++.+ .+.+|
T Consensus 35 ~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~i~~VilTH~H~DH~gg~~~~-~~a~v 113 (274)
T 3aj3_A 35 VYSILIEHAEGRFLIDTGYDYDHVMKVLPFEKPIQEKHQTIPGALGLLGLEPRDIDVVVNSHFHFDHCGGNKYF-PHAKK 113 (274)
T ss_dssp EEEEEEEETTEEEEECCCCCHHHHHHHCGGGCCBCCGGGSHHHHHHHTTCCGGGCCEEECSCCSGGGTTTGGGC-TTSEE
T ss_pred EEEEEEEeCCccEEEECCCCcccccCccccCCcccCccccHHHHHHHcCCCHHHCCEEEecCcCcccCCchhhC-CCCEE
Confidence 345555 47778999998421 13589999999999999999876 57899
Q ss_pred EeCHHHHHHHHHhhc----------c--------------------CCCceEEeCCCceEEECC-EEEEEEecCCCcCce
Q 001045 87 FCSEITSRLLSQILN----------I--------------------NPKFIYPLPIKIPVLIDG-CEVVLVGANHCPGAV 135 (1176)
Q Consensus 87 Y~s~~T~~ll~~~l~----------~--------------------~~~~i~~l~~~~~~~i~~-~~Vt~~~a~H~pGS~ 135 (1176)
|+++.+.+.+..... + ....+..++ ..+++++ ++|...| ||.+|++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~g~~~v~~~p-GHt~g~~ 190 (274)
T 3aj3_A 114 ICHRSEVPQACNPQPFEHLGYSDLSFSAEAAEARGATAQLLEGTTRANSTFEGID--GDVDLARGVKLISTP-GHSIGHY 190 (274)
T ss_dssp EEETTHHHHHHSCCGGGTTTTCCCTTCHHHHHHHTCGGGCCTTCCSTTSCEEEEC--SSEEEETTEEEEECT-TSSTTCE
T ss_pred EECHHHHHHHhCcCCccccccChhhhccccccccccccccccccccCCCCceEcC--CccccCCEEEEEECC-CCCceee
Confidence 999999887753210 0 011234443 3466777 6665554 7999999
Q ss_pred EEEEEEcCCCCcccEEEEECCCCCcc
Q 001045 136 QFLFKVPGRNGGFERYVHTGDFRFCK 161 (1176)
Q Consensus 136 ~flie~~~~~G~~~~IlYTGDfr~~~ 161 (1176)
+|+++.++ + ++++||||+-+..
T Consensus 191 ~~~~~~~~--~--~~~lf~GD~~~~~ 212 (274)
T 3aj3_A 191 SLLVEFPR--R--KPILFTIDAAYTQ 212 (274)
T ss_dssp EEEECCSS--S--CCEEEEETTCSSH
T ss_pred EEEEECCC--C--CEEEEEechhhhH
Confidence 99998642 1 5899999976543
No 64
>2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A 2q0i_A 3dh8_A*
Probab=98.88 E-value=1.9e-09 Score=121.27 Aligned_cols=115 Identities=16% Similarity=0.074 Sum_probs=86.9
Q ss_pred CCCCeeE--eCCccEEEecCCc---------------CCCCccEEEeccCChhhhCCcccCC---CCceEEeCHHHHHHH
Q 001045 37 TFPPSKH--VPNTRFLIDAFRY---------------AADFSVSYFLSHFHSDHYTGLSPSW---SKGIIFCSEITSRLL 96 (1176)
Q Consensus 37 ~~p~~~~--ipg~~~liD~~~~---------------~~~~i~avfITHaH~DHiggL~~l~---~~~pIY~s~~T~~ll 96 (1176)
..+++.+ ..+..++||++.. ...++++||+||.|.||++|++.+. .+.+||+++.+.+.+
T Consensus 23 ~~n~~li~~~~~~~iLID~G~~~~~~~~~~~l~~~~~~~~~i~~Ii~TH~H~DH~gg~~~l~~~~~~a~v~~~~~~~~~~ 102 (303)
T 2vw8_A 23 QVPVFLLRLGEASWALVEGGISRDAELVWADLCRWVADPSQVHYWLITHKHYDHCGLLPYLCPRLPNVQVLASERTCQAW 102 (303)
T ss_dssp TSCEEEEEEETTEEEEECCCCGGGHHHHHHHHHHHCSCGGGEEEEECCCCSTTTTTTHHHHGGGCTTCEEEEEHHHHHHT
T ss_pred CceEEEEEeCCCceEEEECCCCCcHHHHHHHHHHHhcCcccceEEEeccCCccccCCHHHHHHhCCCCeEEECHHHHHHH
Confidence 4556776 4667799999842 2357899999999999999998753 468999999988765
Q ss_pred HHh--------h--------cc-------CCCceEEeCCCceEEECC-EEEEEEec-CCCcCceEEEEEEcCCCCcccEE
Q 001045 97 SQI--------L--------NI-------NPKFIYPLPIKIPVLIDG-CEVVLVGA-NHCPGAVQFLFKVPGRNGGFERY 151 (1176)
Q Consensus 97 ~~~--------l--------~~-------~~~~i~~l~~~~~~~i~~-~~Vt~~~a-~H~pGS~~flie~~~~~G~~~~I 151 (1176)
... + +. ....+..+..|+.+.+++ ++++++.+ ||.+|+++|++.. .++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~lg~g~~l~~i~~pGHt~g~~~~~~~~-------~~~ 175 (303)
T 2vw8_A 103 KSESAVRVVERLNRQLLRAEQRLPEACAWDALPVRAVADGEWLELGPRHRLQVIEAHGHSDDHVVFYDVR-------RRR 175 (303)
T ss_dssp TCHHHHHHHHHHHHHTCCTTCCCCCCCCGGGSCEEEECTTCEEEEETTEEEEEEECTTSSTTCEEEEETT-------TTE
T ss_pred hccchhhHHHHHHHHHHHhhcccccccCCCCCCceEcCCCCEEecCCCeEEEEEECCCCCcccEEEEECC-------CCE
Confidence 421 1 00 011246778889999987 88888887 8999999998852 479
Q ss_pred EEECCCC
Q 001045 152 VHTGDFR 158 (1176)
Q Consensus 152 lYTGDfr 158 (1176)
+||||.-
T Consensus 176 lf~GD~~ 182 (303)
T 2vw8_A 176 LFCGDAL 182 (303)
T ss_dssp EEEETTT
T ss_pred EEEcCcc
Confidence 9999973
No 65
>4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta lactamase, mitochondria; 2.60A {Homo sapiens}
Probab=98.85 E-value=1.1e-09 Score=122.18 Aligned_cols=117 Identities=16% Similarity=0.132 Sum_probs=85.9
Q ss_pred CCCCCCeeE-eCCccEEEecCCcC---------------CCCccEEEeccCChhhhCCcccCC------CCceEEeCHHH
Q 001045 35 PRTFPPSKH-VPNTRFLIDAFRYA---------------ADFSVSYFLSHFHSDHYTGLSPSW------SKGIIFCSEIT 92 (1176)
Q Consensus 35 ~r~~p~~~~-ipg~~~liD~~~~~---------------~~~i~avfITHaH~DHiggL~~l~------~~~pIY~s~~T 92 (1176)
.....++.+ -.+..++||++... ..++++||+||.|.||+||++.+. ...+||+++.+
T Consensus 29 ~~~~n~~li~~~~~~ilID~G~~~~~~~~~~l~~~l~~~~~~i~~Ii~TH~H~DH~gg~~~l~~~~~~~~~~~v~~~~~~ 108 (289)
T 4ad9_A 29 LQGTNTYLVGTGPRRILIDTGEPAIPEYISCLKQALTEFNTAIQEIVVTHWHRDHSGGIGDICKSINNDTTYCIKKLPRN 108 (289)
T ss_dssp BTCCEEEEECSSSSEEEECCCSTTCHHHHHHHHHHHHHTTCCEEEEECSCSSHHHHTTHHHHHHHSCCSSCCCEEECCCS
T ss_pred CCceEEEEEecCCceEEEeCCCCCChHHHHHHHHHHHHcCCCceEEEEcCCCCcccccHHHHHHhhccCCCceEEecCCC
Confidence 455667777 45678999998321 136999999999999999998642 25689987654
Q ss_pred HHHHHHhhccCCCceEEeCCCceEEECCEEEEEEec-CCCcCceEEEEEEcCCCCcccEEEEECCCCC
Q 001045 93 SRLLSQILNINPKFIYPLPIKIPVLIDGCEVVLVGA-NHCPGAVQFLFKVPGRNGGFERYVHTGDFRF 159 (1176)
Q Consensus 93 ~~ll~~~l~~~~~~i~~l~~~~~~~i~~~~Vt~~~a-~H~pGS~~flie~~~~~G~~~~IlYTGDfr~ 159 (1176)
.... ..+......+..+..|+.+.+++.+++++.+ ||.+|+++|+++. .+++||||.-+
T Consensus 109 ~~~~-~~~~~~~~~~~~~~~g~~~~~gg~~~~~~~~pGHt~~~~~~~~~~-------~~~lftGD~~~ 168 (289)
T 4ad9_A 109 PQRE-EIIGNGEQQYVYLKDGDVIKTEGATLRVLYTPGHTDDHMALLLEE-------ENAIFSGDCIL 168 (289)
T ss_dssp SCCC-CCBTTTTBCEEECCTTCEEEETTEEEEEEECCSSSTTCEEEEETT-------TTEEEEETSSC
T ss_pred cchh-hhccCCCCceEEcCCCCEEEeCCeEEEEEECCCCCCCCEEEEEcC-------CCEEEEecccC
Confidence 2110 0111122346788999999999999999998 9999999999952 36999999743
No 66
>4efz_A Metallo-beta-lactamase family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.60A {Burkholderia pseudomallei}
Probab=98.84 E-value=3.3e-09 Score=119.31 Aligned_cols=125 Identities=15% Similarity=0.144 Sum_probs=90.6
Q ss_pred CCCCCCeeEe---CCccEEEecCCc----------------------CCCCccEEEeccCChhhhCCcccCCC--CceEE
Q 001045 35 PRTFPPSKHV---PNTRFLIDAFRY----------------------AADFSVSYFLSHFHSDHYTGLSPSWS--KGIIF 87 (1176)
Q Consensus 35 ~r~~p~~~~i---pg~~~liD~~~~----------------------~~~~i~avfITHaH~DHiggL~~l~~--~~pIY 87 (1176)
...+.+|.+. .+..++||++.. ...+|++||+||.|.||++|+..+.. +.+||
T Consensus 14 ~~~~~~yli~~~~~~~~ilID~g~~~~~~~~~~~~~~~~~l~~~l~~~g~~i~~Il~TH~H~DH~gg~~~l~~~~~a~i~ 93 (298)
T 4efz_A 14 ATCTISYLLFDSGSGECALIDSVLDYDPKSGRTRTASADQLIARVAALGARVRWLLETHVHADHLSAAPYLKTRVGGEIA 93 (298)
T ss_dssp TTCBEEEEEECTTTCEEEEESCCBEEETTTTEEECHHHHHHHHHHHHHTCEEEEEECSSCCSSSBCCHHHHHHHHCCEEE
T ss_pred CcccEEEEEEECCCCeEEEEcCCCCccccccccCcccHHHHHHHHHHCCCcceEEEECCCchhhhhhHHHHHHHhCCcEE
Confidence 3445556663 234799999731 01368999999999999999987543 68999
Q ss_pred eCHHHHHHHHHh---hccCC-------CceEEeCCCceEEECCEEEEEEec-CCCcCceEEEEEEcCC---CCcccEEEE
Q 001045 88 CSEITSRLLSQI---LNINP-------KFIYPLPIKIPVLIDGCEVVLVGA-NHCPGAVQFLFKVPGR---NGGFERYVH 153 (1176)
Q Consensus 88 ~s~~T~~ll~~~---l~~~~-------~~i~~l~~~~~~~i~~~~Vt~~~a-~H~pGS~~flie~~~~---~G~~~~IlY 153 (1176)
+++.+..++... ++... .....+..|+.+.+++++|+++.+ ||.+|+++|++...++ ++ ..++|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~g~~~i~vi~tPGHT~g~~~~~~~~~~~~~~~~--~~~lf 171 (298)
T 4efz_A 94 IGRHVTRVQDVFGKLFNAGPAFAHDGSQFDRLLDDGDTLALGALSIRAMHTPGHTPACMTYVVTEAHAAHDAR--DAAAF 171 (298)
T ss_dssp EETTHHHHHHHHHHHTTCCTTSCSSSTTSSEEECTTCEEEETTEEEEEEECCSSSTTCEEEEEEETTCCGGGC--BCEEE
T ss_pred EChhHHHHHHHHHHhcCCcccccccccCCCEEeCCCCEEEECCEEEEEEECCCCCcccEEEEECCCcccccCC--ceEEE
Confidence 999888776532 22221 123678889999999999999998 7999999999987430 00 23999
Q ss_pred ECCCCCcc
Q 001045 154 TGDFRFCK 161 (1176)
Q Consensus 154 TGDfr~~~ 161 (1176)
|||+-+.+
T Consensus 172 tGD~l~~~ 179 (298)
T 4efz_A 172 VGDTLFMP 179 (298)
T ss_dssp CCSSBCCT
T ss_pred EcCccccC
Confidence 99986543
No 67
>1xm8_A Glyoxalase II; structural genomics, protein structure initiative, CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2 PDB: 2q42_A
Probab=98.82 E-value=1.9e-09 Score=118.84 Aligned_cols=107 Identities=19% Similarity=0.168 Sum_probs=82.0
Q ss_pred CeeEe-C--CccEEEecCCc---------CCCCccEEEeccCChhhhCCcccCCC--CceEEeCHHHHHHHHHhhccCCC
Q 001045 40 PSKHV-P--NTRFLIDAFRY---------AADFSVSYFLSHFHSDHYTGLSPSWS--KGIIFCSEITSRLLSQILNINPK 105 (1176)
Q Consensus 40 ~~~~i-p--g~~~liD~~~~---------~~~~i~avfITHaH~DHiggL~~l~~--~~pIY~s~~T~~ll~~~l~~~~~ 105 (1176)
+|.+. + +..++||++.. ...++++||+||.|.||++|+..+.. +.+||+++.+...+. .
T Consensus 14 ~yli~~~~~~~~~lID~g~~~~i~~~l~~~g~~i~~Il~TH~H~DH~gg~~~l~~~~~~~v~~~~~~~~~~~-------~ 86 (254)
T 1xm8_A 14 AYILHDEDTGTVGVVDPSEAEPIIDSLKRSGRNLTYILNTHHHYDHTGGNLELKDRYGAKVIGSAMDKDRIP-------G 86 (254)
T ss_dssp EEEEECTTTCCEEEECCSSHHHHHHHHHHHTCCCCEEECSSCCHHHHTTHHHHHHHHCCEEEEEGGGGGGST-------T
T ss_pred EEEEEECCCCEEEEEeCCCHHHHHHHHHHcCCCccEEEECCCCCcccccHHHHHHHcCCeEEEchhhhhcCC-------C
Confidence 55553 2 45789999732 12468999999999999999987542 689999988754322 1
Q ss_pred ceEEeCCCceEEECCEEEEEEec-CCCcCceEEEEEEcCCCCcccEEEEECCCCCc
Q 001045 106 FIYPLPIKIPVLIDGCEVVLVGA-NHCPGAVQFLFKVPGRNGGFERYVHTGDFRFC 160 (1176)
Q Consensus 106 ~i~~l~~~~~~~i~~~~Vt~~~a-~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~ 160 (1176)
....+..|+.+.+++.+++++.+ ||.+|+++|+++. .+++||||+-+.
T Consensus 87 ~~~~~~~g~~~~lg~~~~~vi~tPGHt~g~~~~~~~~-------~~~lftGD~l~~ 135 (254)
T 1xm8_A 87 IDMALKDGDKWMFAGHEVHVMDTPGHTKGHISLYFPG-------SRAIFTGDTMFS 135 (254)
T ss_dssp EEEEECTTCEEEETTEEEEEEECCSSSSSCEEEEEGG-------GTEEEEETTEET
T ss_pred CceeeCCCCEEEECCEEEEEEECCCCCCCcEEEEECC-------CCEEEEcCcccc
Confidence 24567889999999999999987 8999999999853 469999998543
No 68
>2gcu_A Putative hydroxyacylglutathione hydrolase 3; ethylmalonic encephalopathy, ETHE1, structural genomics, protein structure initiative; 1.48A {Arabidopsis thaliana}
Probab=98.81 E-value=3.8e-09 Score=115.76 Aligned_cols=113 Identities=19% Similarity=0.101 Sum_probs=85.6
Q ss_pred CCCCCeeEe-C----CccEEEecCCcC-----------CCCccEEEeccCChhhhCCcccC---CCCceEEeCHHHHHHH
Q 001045 36 RTFPPSKHV-P----NTRFLIDAFRYA-----------ADFSVSYFLSHFHSDHYTGLSPS---WSKGIIFCSEITSRLL 96 (1176)
Q Consensus 36 r~~p~~~~i-p----g~~~liD~~~~~-----------~~~i~avfITHaH~DHiggL~~l---~~~~pIY~s~~T~~ll 96 (1176)
....+|.+. + +..++||++... ..++++||+||.|.||++|+..+ +...+||+++.+..
T Consensus 13 ~~~~~yli~~~~~~~~~~ilID~g~~~~~~~~~~l~~~g~~i~~Il~TH~H~DH~gg~~~l~~~~~~~~v~~~~~~~~-- 90 (245)
T 2gcu_A 13 SSTFTYLLADVSHPDKPALLIDPVDKTVDRDLKLIDELGLKLIYAMNTHVHADHVTGTGLLKTKLPGVKSVISKASGS-- 90 (245)
T ss_dssp TTEEEEEEEETTSTTCEEEEESCBGGGHHHHHHHHHHHTCEEEEEECSSCCSSSCBSHHHHHHHSTTCEEEEEGGGCC--
T ss_pred CceEEEEEEcCCCCCCcEEEEeCCCchHHHHHHHHHHCCCeeeEEEeCCCChhhhhhHHHHHHhCCCCeEEecccccc--
Confidence 345566663 3 568999998421 13589999999999999999875 45789999987632
Q ss_pred HHhhccCCCceEEeCCCceEEECCEEEEEEec-CCCcCceEEEEEEcCC-CCcccEEEEECCCCCc
Q 001045 97 SQILNINPKFIYPLPIKIPVLIDGCEVVLVGA-NHCPGAVQFLFKVPGR-NGGFERYVHTGDFRFC 160 (1176)
Q Consensus 97 ~~~l~~~~~~i~~l~~~~~~~i~~~~Vt~~~a-~H~pGS~~flie~~~~-~G~~~~IlYTGDfr~~ 160 (1176)
.....+..|+.+.+++++|+++.+ ||.+|+++|+++..++ ++ .+++||||+-+.
T Consensus 91 --------~~~~~~~~g~~~~~g~~~i~v~~tpGHt~g~~~~~~~~~~~~~~--~~~lftGD~~~~ 146 (245)
T 2gcu_A 91 --------KADLFLEPGDKVSIGDIYLEVRATPGHTAGCVTYVTGEGADQPQ--PRMAFTGDAVLI 146 (245)
T ss_dssp --------CCSEEECTTCEEEETTEEEEEEECCSSSTTCEEEEECCSTTSCS--SCEEEEETTSBT
T ss_pred --------cCCEEcCCCCEEEECCEEEEEEECCCCCCCCEEEEECCcccccc--ccEEEECCcccc
Confidence 123567889999999999999987 8999999999976421 01 379999998654
No 69
>1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP} SCOP: d.157.1.5
Probab=98.79 E-value=5.5e-09 Score=119.41 Aligned_cols=115 Identities=14% Similarity=0.258 Sum_probs=79.6
Q ss_pred CeeE-eCCccEEEecCCcC-------------------CCCccEEEeccCChhhhCCccc----CCCCceEEeCHHHHHH
Q 001045 40 PSKH-VPNTRFLIDAFRYA-------------------ADFSVSYFLSHFHSDHYTGLSP----SWSKGIIFCSEITSRL 95 (1176)
Q Consensus 40 ~~~~-ipg~~~liD~~~~~-------------------~~~i~avfITHaH~DHiggL~~----l~~~~pIY~s~~T~~l 95 (1176)
++.+ .++..+|||++... ..+|++|||||.|.||++|+.. .+.+.+||+++.+.+.
T Consensus 99 ~~LI~~~~~~iLIDtG~~~~~~~~~~~l~~~L~~~Gi~~~~Id~VilTH~H~DHiggl~~~~~~~fp~a~v~~~~~~~~~ 178 (331)
T 1p9e_A 99 GYLVNTGSKLVLVDTGAAGLFGPTLGRLAANLKAAGYQPEQVDEIYITHMHPDHVGGLMVGEQLAFPNAVVRADQKEADF 178 (331)
T ss_dssp EEEEECSSCEEEECCCCTTSSCTTCCCHHHHHHHTTCCGGGCCEEECSCCCHHHHGGGEETTEESSTTCEEECBHHHHHH
T ss_pred EEEEEECCEEEEEECCCCCcCCcchhHHHHHHHHcCCCHHHCCEEEeCCcccccCCcccccccccCCCCEEEECHHHHHH
Confidence 5555 47778999998331 1368999999999999999984 3457899999999876
Q ss_pred HHHhh---ccC--------------------CCceEEeCCCceEEECCEEEEEEecCCCcCceEEEEEEcCCCCcccEEE
Q 001045 96 LSQIL---NIN--------------------PKFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYV 152 (1176)
Q Consensus 96 l~~~l---~~~--------------------~~~i~~l~~~~~~~i~~~~Vt~~~a~H~pGS~~flie~~~~~G~~~~Il 152 (1176)
+.... +.. ...+..++.+..+.. ++++...+ ||.||+++|+++.++ ++++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~-gi~vi~tp-GHtpG~~~~~i~~~~-----~~vl 251 (331)
T 1p9e_A 179 WLSQTNLDKAPDDESKGFFKGAMASLNPYVKAGKFKPFSGNTDLVP-GIKALASH-GHTPGHTTYVVESQG-----QKLA 251 (331)
T ss_dssp HSCHHHHTTCSSTTSCHHHHHHHHHHHHHHHTTCBCCBCSSEECST-TEEEEECT-TSSTTCEEEEEEETT-----EEEE
T ss_pred HhCchhhccCchhhhhHHHHHHHHHhhhhcccCceEEeCCCCEEcc-cEEEEEcC-CCChhCEEEEEEECC-----cEEE
Confidence 54211 000 122344555544332 45544433 899999999999753 6899
Q ss_pred EECCCCCcc
Q 001045 153 HTGDFRFCK 161 (1176)
Q Consensus 153 YTGDfr~~~ 161 (1176)
|+||+-+..
T Consensus 252 f~GD~~~~~ 260 (331)
T 1p9e_A 252 LLGDLILVA 260 (331)
T ss_dssp ECTTSCCCH
T ss_pred EEECccCcc
Confidence 999987654
No 70
>2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain, hydrola; HET: SPD; 1.80A {Leishmania infantum} PDB: 2p1e_A*
Probab=98.78 E-value=6.7e-09 Score=117.81 Aligned_cols=110 Identities=20% Similarity=0.165 Sum_probs=82.2
Q ss_pred CeeE-e--CCccEEEecCCc----------C----C-----CCccEEEeccCChhhhCCcccCCC---------CceEEe
Q 001045 40 PSKH-V--PNTRFLIDAFRY----------A----A-----DFSVSYFLSHFHSDHYTGLSPSWS---------KGIIFC 88 (1176)
Q Consensus 40 ~~~~-i--pg~~~liD~~~~----------~----~-----~~i~avfITHaH~DHiggL~~l~~---------~~pIY~ 88 (1176)
+|.+ . .+..++||++.. . . .++++||+||.|.||++|+..+.. +.+||+
T Consensus 42 ~ylI~~~~~~~~ilID~G~~~~~~~~~l~~~l~~~g~~~~~~~i~~IllTH~H~DH~gg~~~l~~~~~~~~~~~~~~v~~ 121 (311)
T 2p18_A 42 SYLINDHTTHTLAAVDVNADYKPILTYIEEHLKQQGNADVTYTFSTILSTHKHWDHSGGNAKLKAELEAMNSTVPVVVVG 121 (311)
T ss_dssp EEEEEETTTTEEEEESCCSCCHHHHHHHHHTC--------CCEEEEEEESSSSHHHHTTHHHHHHHHHSCC--CCCEEEE
T ss_pred EEEEEeCCCCcEEEEeCCCChHHHHHHHHHHHhhcCCCCCCCCccEEEeCCCCccccCCHHHHHHhhhhcccCCCCEEEE
Confidence 5666 3 256899999511 1 1 468999999999999999986432 579999
Q ss_pred CHHHHHHHHHhhccCCCceEEeCCCceEEECCEEEEEEec-CCCcCceEEEEEEcCCCCccc-EEEEECCCCCc
Q 001045 89 SEITSRLLSQILNINPKFIYPLPIKIPVLIDGCEVVLVGA-NHCPGAVQFLFKVPGRNGGFE-RYVHTGDFRFC 160 (1176)
Q Consensus 89 s~~T~~ll~~~l~~~~~~i~~l~~~~~~~i~~~~Vt~~~a-~H~pGS~~flie~~~~~G~~~-~IlYTGDfr~~ 160 (1176)
++... + +.....+..|+.+.+++++|+++.+ ||.+|+++|+++.+++++ . +++||||+-+.
T Consensus 122 ~~~~~--------~-~~~~~~l~~g~~l~lg~~~l~vi~tPGHT~g~i~~~~~~~~~~~--~~~~lftGD~l~~ 184 (311)
T 2p18_A 122 GANDS--------I-PAVTKPVREGDRVQVGDLSVEVIDAPCHTRGHVLYKVQHPQHPN--DGVALFTGDTMFI 184 (311)
T ss_dssp EGGGT--------C-TTCSEEECTTCEEEETTEEEEEEECCSSSTTCEEEEEECTTCGG--GCEEEEEETTEET
T ss_pred echhc--------C-CCCceEeCCCCEEEECCeEEEEEECCCCCcccEEEEEecCCcCC--cCCEEEEcCcccc
Confidence 87652 1 1234677889999999999999998 999999999997543111 3 79999998543
No 71
>2y8b_A Metallo-B-lactamase; hydrolase, cephalosporins, antibiotic recognition; 1.70A {Pseudomonas aeruginosa} PDB: 2y8a_A 2y87_A 2yz3_A* 2whg_A* 2wrs_A* 1ko3_A 1ko2_A
Probab=98.77 E-value=8.6e-09 Score=113.99 Aligned_cols=115 Identities=18% Similarity=0.094 Sum_probs=83.1
Q ss_pred CCeeE-eCCccEEEecCCc-------------C-CCCccEEEeccCChhhhCCcccCC-CCceEEeCHHHHHHHHHhhcc
Q 001045 39 PPSKH-VPNTRFLIDAFRY-------------A-ADFSVSYFLSHFHSDHYTGLSPSW-SKGIIFCSEITSRLLSQILNI 102 (1176)
Q Consensus 39 p~~~~-ipg~~~liD~~~~-------------~-~~~i~avfITHaH~DHiggL~~l~-~~~pIY~s~~T~~ll~~~l~~ 102 (1176)
.++.+ .++..++||++.. . ..++++|++||+|.||++|+..+. .+.+||+++.+.+.+......
T Consensus 69 n~~li~~~~~~iLID~G~~~~~~~~l~~~l~~~~g~~i~~VilTH~H~DH~gg~~~~~~~~a~v~~~~~~~~~~~~~~~~ 148 (265)
T 2y8b_A 69 NGLIVRDADELLLIDTAWGAKNTVALLAEIEKQIGLPVTRSISTHFHDDRVGGVDVLRAAGVATYTSPLTRQLAEAAGNE 148 (265)
T ss_dssp EEEEEEETTEEEEESCCSSHHHHHHHHHHHHHHTCSCEEEEECSSSSHHHHTTHHHHHHTTCEEEECHHHHHHHHHTTCC
T ss_pred eEEEEEECCeEEEEeCCCCHHHHHHHHHHHHHhcCCCeEEEEeCCCChhhcCCHHHHhhCCCeEEECHHHHHHHHhcccc
Confidence 34444 3567899999831 0 236899999999999999998643 368999999999988764322
Q ss_pred CCCc-eEE-eCCCceEEECCEEEEEEecCCCcCceEEEEEEcCCCCcccEEEEECCCCCc
Q 001045 103 NPKF-IYP-LPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFC 160 (1176)
Q Consensus 103 ~~~~-i~~-l~~~~~~~i~~~~Vt~~~a~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~ 160 (1176)
.... +.. .+.++.+.++++++.....||.||+++|+++. .+++|+||+-+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~g~~~v~~~~pGHt~g~~~~~~~~-------~~~lf~GD~~~~ 201 (265)
T 2y8b_A 149 VPAHSLKALSSSGDVVRFGPVEVFYPGAAHSGDNLVVYVPA-------VRVLFGGCAVHE 201 (265)
T ss_dssp CCSEECSSCSSTTEEEEETTEEEEECCSSSSTTCCEEEETT-------TTEEEEETTSCC
T ss_pred cccccccccCCCCcEEeecCEEEEecCCCCCCCCEEEEecC-------CCEEEEcccccc
Confidence 1111 111 25566788889888766679999999998852 369999998654
No 72
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}
Probab=98.76 E-value=2.4e-09 Score=128.37 Aligned_cols=124 Identities=16% Similarity=0.122 Sum_probs=89.0
Q ss_pred CCCCeeE---eCCccEEEecCCcC----------CCCccEEEeccCChhhhCCcccCC--CCceEEeCHHHHHHHHHhhc
Q 001045 37 TFPPSKH---VPNTRFLIDAFRYA----------ADFSVSYFLSHFHSDHYTGLSPSW--SKGIIFCSEITSRLLSQILN 101 (1176)
Q Consensus 37 ~~p~~~~---ipg~~~liD~~~~~----------~~~i~avfITHaH~DHiggL~~l~--~~~pIY~s~~T~~ll~~~l~ 101 (1176)
.+.+|.+ ..+..++||++... ..++++||+||.|.||++|+..+. .+.+||+++.+...+...+.
T Consensus 15 ~~n~yli~~~~~~~~ilID~g~~~~~~~~~l~~~~~~i~~Il~TH~H~DH~gg~~~l~~~~~~~i~~~~~~~~~~~~~~~ 94 (474)
T 3tp9_A 15 AHASYLVGCQETGEACVIDPARDVEPYLLTAKREGLRIVAALETHIHADFVSGAREMADRAGAAICVSDEGPPEWKSEYV 94 (474)
T ss_dssp TEEEEEEEETTTCEEEEESCCSCCHHHHHHHHHHTCEEEEEECSSCCSSSCCCHHHHHHHHCCEEEEECCSCGGGCCGGG
T ss_pred eeEEEEEEECCCCEEEEEcCCCChHHHHHHHHHcCCeeEEEEcCcCchhhhCCHHHHHHHHCCcEEEcCcchhhhccccc
Confidence 4556666 24667999998321 136899999999999999998754 26899998877544332111
Q ss_pred cCCCceEEeCCCceEEECCEEEEEEec-CCCcCceEEEEEEcCCCCcccEEEEECCCCCcc
Q 001045 102 INPKFIYPLPIKIPVLIDGCEVVLVGA-NHCPGAVQFLFKVPGRNGGFERYVHTGDFRFCK 161 (1176)
Q Consensus 102 ~~~~~i~~l~~~~~~~i~~~~Vt~~~a-~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~~ 161 (1176)
.......+..|+.+.+++++|+++.+ ||.||+++|++...++++...+++||||+-+..
T Consensus 95 -~~~~~~~~~~g~~~~~g~~~i~~i~tPGHt~g~~~~~~~~~~~~~~~~~~lftGD~lf~~ 154 (474)
T 3tp9_A 95 -KAYPHRLLKDGDELHFGNVRIVVMHTPGHTPEHVSYLLYDGKTSPDVPMALFSGDFVFVG 154 (474)
T ss_dssp -GGSSEEEECTTCEEEETTEEEEEEECCSSSSSCEEEEEEETTTEEEEEEEEEEETSEETT
T ss_pred -ccccceECCCCCEEEECCEEEEEEECCCCCCCCEEEEEecCCCCCCCceEEEeCCccccC
Confidence 11124678899999999999999998 799999999998743100001799999985543
No 73
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa}
Probab=98.75 E-value=8.3e-09 Score=112.02 Aligned_cols=115 Identities=15% Similarity=0.061 Sum_probs=82.6
Q ss_pred CCCeeEe-CC-ccEEEecCCcC--------------CCCccEEEeccCChhhhCCcccCC-CCceEEeCHHHHHHHHHhh
Q 001045 38 FPPSKHV-PN-TRFLIDAFRYA--------------ADFSVSYFLSHFHSDHYTGLSPSW-SKGIIFCSEITSRLLSQIL 100 (1176)
Q Consensus 38 ~p~~~~i-pg-~~~liD~~~~~--------------~~~i~avfITHaH~DHiggL~~l~-~~~pIY~s~~T~~ll~~~l 100 (1176)
..++.+. ++ ..++||++... .....+||+||+|.||+||++.+. .+.+||+++.+.+.+....
T Consensus 30 ~n~~li~~~~~~~iLiD~G~~~~~~~~l~~~l~~~~~~~~~~vi~TH~H~DH~gg~~~l~~~~~~v~~~~~~~~~~~~~~ 109 (246)
T 2fhx_A 30 SNVLVAKMLDGTVVIVSSPFENLGTQTLMDWVAKTMKPKKVVAINTHFHLDGTGGNEIYKKMGAETWSSDLTKQLRLEEN 109 (246)
T ss_dssp EEEEEEECTTSEEEEESCCSSHHHHHHHHHHHHHHHCCSEEEEECCSSSHHHHTTHHHHHHTTCEEEEEHHHHHHHHHHH
T ss_pred CCEEEEEeCCCeEEEEeCCCCHHHHHHHHHHHHHhcCCCcEEEEeCCCCccccChHHHHhhcCCEEEEcHHHHHHHHhcc
Confidence 3456653 43 57999997320 122347999999999999998653 2679999999998875321
Q ss_pred -----------c-------------cCCCceEEeCCCceEEECCEEEEEEe--cCCCcCceEEEEEEcCCCCcccEEEEE
Q 001045 101 -----------N-------------INPKFIYPLPIKIPVLIDGCEVVLVG--ANHCPGAVQFLFKVPGRNGGFERYVHT 154 (1176)
Q Consensus 101 -----------~-------------~~~~~i~~l~~~~~~~i~~~~Vt~~~--a~H~pGS~~flie~~~~~G~~~~IlYT 154 (1176)
. +.+..+..+..|+.+.+++.+++++. .||.+|+++|+++. .+++||
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~g~~~i~~~~~~pGHt~g~~~~~~~~-------~~~lf~ 182 (246)
T 2fhx_A 110 KKDRIKAAEFYKNEDLKRRILSSHPVPADNVFDLKQGKVFSFSNELVEVSFPGPAHSPDNVVVYFPK-------KKLLFG 182 (246)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHTCCCCCSEEECTTTCEEEEETTEEEEEECCCCSSSTTCCEEEETT-------TTEEEE
T ss_pred hhhhHHHHhhhccccchhhhcccccCCCCceeecCCCCEEEECCEEEEEEeCCCCCCCCCEEEEEcC-------CCEEEE
Confidence 0 01122345677888999999999984 48999999998742 479999
Q ss_pred CCCCC
Q 001045 155 GDFRF 159 (1176)
Q Consensus 155 GDfr~ 159 (1176)
||+-+
T Consensus 183 GD~~~ 187 (246)
T 2fhx_A 183 GCMIK 187 (246)
T ss_dssp ETTCC
T ss_pred CCEec
Confidence 99855
No 74
>2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline protein; choline-binding protein, PCE, phosphorylcholine estera hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae} SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A*
Probab=98.74 E-value=1.5e-08 Score=123.47 Aligned_cols=163 Identities=9% Similarity=0.102 Sum_probs=97.6
Q ss_pred CCccEEEeccCChhhhCCcccCC---CCceEEeCHHHHHHH-----------------HHhhccCCCceE--EeCCCceE
Q 001045 59 DFSVSYFLSHFHSDHYTGLSPSW---SKGIIFCSEITSRLL-----------------SQILNINPKFIY--PLPIKIPV 116 (1176)
Q Consensus 59 ~~i~avfITHaH~DHiggL~~l~---~~~pIY~s~~T~~ll-----------------~~~l~~~~~~i~--~l~~~~~~ 116 (1176)
.+|++|||||.|.||++|++.+. ...+||+++.+...+ ........ .+. .+..++.+
T Consensus 76 ~~id~vilTH~H~DHiggl~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~g~~~ 154 (547)
T 2bib_A 76 QKLDFILVTHTHSDHIGNVDELLSTYPVDRVYLKKYSDSRITNSERLWDNLYGYDKVLQTATETGV-SVIQNITQGDAHF 154 (547)
T ss_dssp CCBSCEECCCSCHHHHTTHHHHHHHSCBSEEECCCCCGGGBSCGGGCTTHHHHHHHHHHHHHHTTC-EEECSCCTTTTEE
T ss_pred ccccEEEEcCCCccccCCHHHHHHhCCccEEEECcccccccCChHHHHhHHHHHHHHHHHHHHhCC-eEEEeecCCCceE
Confidence 35899999999999999998754 234699887543221 11111011 111 24567789
Q ss_pred EECCEEEEEEec---CC-----------CcCceEEEEEEcCCCCcccEEEEECCCCCcccccchhhhhc-cCCCcEEEEe
Q 001045 117 LIDGCEVVLVGA---NH-----------CPGAVQFLFKVPGRNGGFERYVHTGDFRFCKTMLLQPVMNE-FAGCDAVFLD 181 (1176)
Q Consensus 117 ~i~~~~Vt~~~a---~H-----------~pGS~~flie~~~~~G~~~~IlYTGDfr~~~~~~~~~~l~~-~~~vDvLI~E 181 (1176)
.+++++|++++. .| ..+|++|+|+.++ .++|||||+....... . .+.. ..++|+|++-
T Consensus 155 ~~g~~~i~~l~~~~~~h~~~~~~~~~~~n~~S~vl~i~~~~-----~~iLftGD~~~~~~~e-~-~l~~~~~~~DvLkv~ 227 (547)
T 2bib_A 155 QFGDMDIQLYNYENETDSSGELKKIWDDNSNSLISVVKVNG-----KKIYLGGDLDNVHGAE-D-KYGPLIGKVDLMKFN 227 (547)
T ss_dssp EETTEEEEEESCSCCBCTTSCBCCBSSGGGGCCEEEEEETT-----EEEEECTTCCSTTSHH-H-HHHHHHCCCSEEECT
T ss_pred ecCCeeEEEecCccccCccccccccCCCCCCcEEEEEEECC-----EEEEecCCccchhhhh-h-hhcccccceeEEEec
Confidence 999999999973 23 4679999999854 6999999998653211 1 1111 2579999862
Q ss_pred CCCCCCCCCCC-ChHHHHHHHHHHHHHHhhhccccCCCeEEEEEecccc---c-hHHHHHHHHHHcCCcEEEc
Q 001045 182 TTYCNPKFLFP-LQEESVEYVVNVVNRVGGELNEGLQKRVLFLVATYVI---G-KEKILIEIFKKCGRKVCVD 249 (1176)
Q Consensus 182 sTy~~~~~~~p-~~~e~~~~l~~~i~~~~~~~~~~~~g~vlvli~~~sl---G-R~q~ll~ia~~~g~~I~vd 249 (1176)
+ |- +.......++ +.+ ..++ ++|++-.- + -.+++++.+++.+.+++..
T Consensus 228 ----H----HG~S~~s~s~~fl---~~v--------~P~~-aiiS~g~~n~~~hP~~evl~~l~~~g~~v~~T 280 (547)
T 2bib_A 228 ----H----HHDTNKSNTKDFI---KNL--------SPSL-IVQTSDSLPWKNGVDSEYVNWLKERGIERINA 280 (547)
T ss_dssp ----T----TTBCSSSSCHHHH---HHH--------CCSE-EEESBSSCSBSSSBCHHHHHHHHTTTCEEEEC
T ss_pred ----c----ccCcccCChHHHH---Hhc--------CCcE-EEEcCCcccccCCCCHHHHHHHHhCCceEEEe
Confidence 1 10 1111112233 222 2232 44433111 1 2567888888888888763
No 75
>3q6v_A Beta-lactamase; metalloenzyme, alpha-beta, hydrolase; 1.37A {Serratia fonticola} PDB: 3sd9_A
Probab=98.74 E-value=7e-09 Score=111.41 Aligned_cols=114 Identities=13% Similarity=0.056 Sum_probs=79.1
Q ss_pred CCeeE-eCCccEEEecCCc--------------CCCCccEEEeccCChhhhCCcccCC-CCceEEeCHHHHHHHHHhhc-
Q 001045 39 PPSKH-VPNTRFLIDAFRY--------------AADFSVSYFLSHFHSDHYTGLSPSW-SKGIIFCSEITSRLLSQILN- 101 (1176)
Q Consensus 39 p~~~~-ipg~~~liD~~~~--------------~~~~i~avfITHaH~DHiggL~~l~-~~~pIY~s~~T~~ll~~~l~- 101 (1176)
.++.+ -++..++||++.. ...++++||+||.|.||+||+..+. .+.+||+++.+...+.....
T Consensus 27 n~~li~~~~~~iLiD~G~~~~~~~~~~~~l~~~~~~~i~~ii~TH~H~DH~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~ 106 (233)
T 3q6v_A 27 NSMVYIGTDGITIIGATWTPETAETLYKEIRKVSPLPINEVINTNYHTDRAGGNAYWKTLGAKIVATQMTYDLQKSQWGS 106 (233)
T ss_dssp EEEEEECSSCEEEESCCSSHHHHHHHHHHHHHHCCCCEEEEECSSSSHHHHTTHHHHHHTTCEEEEEHHHHHHHHHHHHH
T ss_pred cEEEEEeCCeEEEEECCCCHHHHHHHHHHHHHhcCCCcEEEEECCCChhhhChHHHHhhCCCEEEEcHHHHHHHHhhhHH
Confidence 35555 4566799998731 2357899999999999999998764 47899999999988875421
Q ss_pred -----------cC----CCceEEeCCCceEEECCEEEEEEecCCCcCceEEEEEEcCCCCcccEEEEECCCCCc
Q 001045 102 -----------IN----PKFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFC 160 (1176)
Q Consensus 102 -----------~~----~~~i~~l~~~~~~~i~~~~Vt~~~a~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~ 160 (1176)
+. ......+..+..+..++++|...+.||.+|++++++.. .+++| ||.-+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~pGHt~g~~~~~~~~-------~~~lf-gD~~~~ 172 (233)
T 3q6v_A 107 IVNFTRQGNNKYPNLEKSLPDTVFPGDFNLQNGSIRAMYLGEAHTKDGIFVYFPA-------ERVLY-GNCILK 172 (233)
T ss_dssp HHHHHHHHSTTCCCCCCCCCSEEESSCEEETTTTEEEECCCCSSSSSCCEEEETT-------TTEEE-CTTTSC
T ss_pred HHHHHhccccccccccccCCCEEeCCCeEEcCceEEEEECCCCCCcCcEEEEecc-------CCEEE-Cceecc
Confidence 10 00112344443443456776666679999999998853 36888 997544
No 76
>1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase); metallo-hydrolase; HET: GSH GBP; 1.45A {Homo sapiens} SCOP: d.157.1.2 PDB: 1qh3_A*
Probab=98.73 E-value=8.9e-09 Score=113.83 Aligned_cols=108 Identities=16% Similarity=0.174 Sum_probs=79.2
Q ss_pred CeeEe-C--CccEEEecCCcC---------CCCccEEEeccCChhhhCCcccCC---CCceEEeCHHHHHHHHHhhccCC
Q 001045 40 PSKHV-P--NTRFLIDAFRYA---------ADFSVSYFLSHFHSDHYTGLSPSW---SKGIIFCSEITSRLLSQILNINP 104 (1176)
Q Consensus 40 ~~~~i-p--g~~~liD~~~~~---------~~~i~avfITHaH~DHiggL~~l~---~~~pIY~s~~T~~ll~~~l~~~~ 104 (1176)
+|.+. + +..++||++... .-++++||+||.|.||++|+..+. ...+||+++... .
T Consensus 14 ~yli~~~~~~~~vlID~G~~~~i~~~l~~~g~~i~~IllTH~H~DH~gg~~~l~~~~~~~~v~~~~~~~---------~- 83 (260)
T 1qh5_A 14 MYLVIDDETKEAAIVDPVQPQKVVDAARKHGVKLTTVLTTHHHWDHAGGNEKLVKLESGLKVYGGDDRI---------G- 83 (260)
T ss_dssp EEEEEETTTTEEEEESCSSHHHHHHHHHHHTCEEEEEECCCSSHHHHTTHHHHHHHSTTCEEEESCTTS---------T-
T ss_pred EEEEEECCCCEEEEEcCCCHHHHHHHHHHcCCCccEEEeCCCCccccCCHHHHHHHCCCCEEEECcccC---------C-
Confidence 55663 3 467999998321 135899999999999999998653 358999986421 1
Q ss_pred CceEEeCCCceEEECCEEEEEEec-CCCcCceEEEEEEcCCCCcccEEEEECCCCC
Q 001045 105 KFIYPLPIKIPVLIDGCEVVLVGA-NHCPGAVQFLFKVPGRNGGFERYVHTGDFRF 159 (1176)
Q Consensus 105 ~~i~~l~~~~~~~i~~~~Vt~~~a-~H~pGS~~flie~~~~~G~~~~IlYTGDfr~ 159 (1176)
.....+..|+.+.+++++++++.+ ||.+|+++|++......+ .+++||||+-+
T Consensus 84 ~~~~~~~~g~~~~~g~~~~~vi~tPGHt~g~~~~~~~~~~~~~--~~~lftGD~l~ 137 (260)
T 1qh5_A 84 ALTHKITHLSTLQVGSLNVKCLATPCHTSGHICYFVSKPGGSE--PPAVFTGDTLF 137 (260)
T ss_dssp TCSEECCTTCEEEETTEEEEEEECCSSSTTCEEEEEECSSSSS--CCEEEEETTEE
T ss_pred CCCEEeCCCCEEEECCEEEEEEECCCCCCCCEEEEEeccCCCC--CCEEEEcCccc
Confidence 124567788999999999999987 899999999983210011 57999999744
No 77
>2qed_A Hydroxyacylglutathione hydrolase; metallo-B- superfamily, salmonella typhimurium LT2; 1.45A {Salmonella typhimurium} SCOP: d.157.1.2
Probab=98.71 E-value=1.8e-08 Score=111.26 Aligned_cols=104 Identities=18% Similarity=0.185 Sum_probs=79.5
Q ss_pred CCeeEeC--CccEEEecCCcC---------CCCccEEEeccCChhhhCCcccCC---CCceEEeCHHHHHHHHHhhccCC
Q 001045 39 PPSKHVP--NTRFLIDAFRYA---------ADFSVSYFLSHFHSDHYTGLSPSW---SKGIIFCSEITSRLLSQILNINP 104 (1176)
Q Consensus 39 p~~~~ip--g~~~liD~~~~~---------~~~i~avfITHaH~DHiggL~~l~---~~~pIY~s~~T~~ll~~~l~~~~ 104 (1176)
.+|.+.. +..++||++... ..++++||+||.|.||++|+..+. .+.+||+++.+. +.
T Consensus 20 ~~yli~~~~~~~vlID~G~~~~i~~~l~~~g~~i~~Il~TH~H~DH~gg~~~l~~~~~~~~v~~~~~~~------~~--- 90 (258)
T 2qed_A 20 YIWVLTNDEGRCVIVDPGEAAPVLKAIAEHKWMPEAIFLTHHHHDHVGGVKELLQHFPQMTVYGPAETQ------DK--- 90 (258)
T ss_dssp EEEEEECTTSEEEEECCSCHHHHHHHHHHHTCEEEEEECCSCCHHHHTTHHHHHHHCTTCEEEECGGGG------GG---
T ss_pred EEEEEEECCCcEEEEeCCCcHHHHHHHHHcCCCCCEEEeCCCCccccCCHHHHHHHCCCCEEEeccccc------CC---
Confidence 3555533 567999998321 136899999999999999998753 348999998762 11
Q ss_pred CceEEeCCCceEEECCEEEEEEec-CCCcCceEEEEEEcCCCCcccEEEEECCCCCc
Q 001045 105 KFIYPLPIKIPVLIDGCEVVLVGA-NHCPGAVQFLFKVPGRNGGFERYVHTGDFRFC 160 (1176)
Q Consensus 105 ~~i~~l~~~~~~~i~~~~Vt~~~a-~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~ 160 (1176)
.....+..|+.+.+++.+++++.+ ||.+|+++|+ . .+++||||+-+.
T Consensus 91 ~~~~~~~~g~~~~~g~~~~~vi~tPGHt~g~~~~~--~-------~~~lftGD~l~~ 138 (258)
T 2qed_A 91 GATHLVGDGDTIRVLGEKFTLFATPGHTLGHVCYF--S-------RPYLFCGDTLFS 138 (258)
T ss_dssp TCSEECCTTCEEEETTEEEEEEECCSSSTTCEEEE--E-------TTEEEEETTEET
T ss_pred CCcEEeCCCCEEEECCcEEEEEECCCCCCCCeEEE--c-------CCEEEECCCCCC
Confidence 134677889999999999999988 8999999998 2 369999997543
No 78
>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding; HET: SDF; 1.41A {Aeromonas hydrophila} SCOP: d.157.1.1 PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A 3t9m_A 3sw3_A
Probab=98.68 E-value=1.3e-08 Score=108.98 Aligned_cols=110 Identities=11% Similarity=0.023 Sum_probs=76.4
Q ss_pred CCCeeE-eCCccEEEecCCc--------------CCCCccEEEeccCChhhhCCcccCC-CCceEEeCHHHHHHHHHhhc
Q 001045 38 FPPSKH-VPNTRFLIDAFRY--------------AADFSVSYFLSHFHSDHYTGLSPSW-SKGIIFCSEITSRLLSQILN 101 (1176)
Q Consensus 38 ~p~~~~-ipg~~~liD~~~~--------------~~~~i~avfITHaH~DHiggL~~l~-~~~pIY~s~~T~~ll~~~l~ 101 (1176)
..++.+ -++..++||++.. ...+|++||+||+|.||+||+..+. .+.+||+++.+...+.....
T Consensus 23 ~n~~li~~~~~~iLiD~G~~~~~~~~~~~~l~~~~~~~i~~ii~TH~H~DH~gg~~~l~~~~~~v~~~~~~~~~~~~~~~ 102 (227)
T 3iog_A 23 ENSMVYFGAKGVTVVGATWTPDTARELHKLIKRVSRKPVLEVINTNYHTDRAGGNAYWKSIGAKVVSTRQTRDLMKSDWA 102 (227)
T ss_dssp EEEEEEECSSCEEEESCCSSHHHHHHHHHHHHTTCCSCEEEEECSSSSHHHHTTHHHHHHTTCEEEEEHHHHHHHHHHHH
T ss_pred CcEEEEEeCCeEEEEECCCChHHHHHHHHHHHHhcCCCeEEEEeCCCchhhcChHHHHhhCCCeEEECHHHHHHHHHhhH
Confidence 345555 4667899999831 2357899999999999999998753 47899999999988875321
Q ss_pred ---------cC------CCc-eEEeCCCceEEECCEEEEEEe--cCCCcCceEEEEEEcCCCCcccEEEEECCC
Q 001045 102 ---------IN------PKF-IYPLPIKIPVLIDGCEVVLVG--ANHCPGAVQFLFKVPGRNGGFERYVHTGDF 157 (1176)
Q Consensus 102 ---------~~------~~~-i~~l~~~~~~~i~~~~Vt~~~--a~H~pGS~~flie~~~~~G~~~~IlYTGDf 157 (1176)
.. ... ...+ +..+.+++..++++. .||.||+++|++.. .+++| ||.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~pGHt~g~~~~~~~~-------~~~lf-gd~ 166 (227)
T 3iog_A 103 EIVAFTRKGLPEYPDLPLVLPNVVH--DGDFTLQEGKVRAFYAGPAHTPDGIFVYFPD-------EQVLY-GGC 166 (227)
T ss_dssp HHHHHHHHHCTTSCCCCCCCCSEEE--SSCEEETTTTEEEECCCCSSSSSCCEEEETT-------TTEEE-CGG
T ss_pred HHHHHhhcCCCCCCCccccCCCEee--cCeEEEcCcEEEEEecCCCCCCCcEEEEecC-------CCEEE-ccc
Confidence 11 000 1112 234677665566665 59999999998862 36888 774
No 79
>1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor, succinic acid inhibitor, I metallo-beta-lactamase, hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A
Probab=98.67 E-value=1.2e-08 Score=110.07 Aligned_cols=112 Identities=20% Similarity=0.159 Sum_probs=80.1
Q ss_pred CCCeeE-eCCccEEEecCCcC-------------CCCccEEEeccCChhhhCCcccCC-CCceEEeCHHHHHHHHHhhcc
Q 001045 38 FPPSKH-VPNTRFLIDAFRYA-------------ADFSVSYFLSHFHSDHYTGLSPSW-SKGIIFCSEITSRLLSQILNI 102 (1176)
Q Consensus 38 ~p~~~~-ipg~~~liD~~~~~-------------~~~i~avfITHaH~DHiggL~~l~-~~~pIY~s~~T~~ll~~~l~~ 102 (1176)
..++.+ .++..++||++... ..++++||+||.|.||++|+..+. .+.+||+++.+.+.+......
T Consensus 33 ~n~~li~~~~~~iliD~g~~~~~~~~~~~~l~~~g~~i~~ii~TH~H~DH~gg~~~l~~~~~~v~~~~~~~~~~~~~~~~ 112 (228)
T 1jjt_A 33 KHGLVVLVNAEAYLIDTPFTAKDTEKLVTWFVERGYKIKGSISSHFHSDSTGGIEWLNSRSIPTYASELTNELLKKDGKV 112 (228)
T ss_dssp EEEEEEEETTEEEEESCCSSHHHHHHHHHHHHTTTCEEEEEECSSSSHHHHTTHHHHHHTTCCEEEEHHHHHHHHHTTCC
T ss_pred ceEEEEEECCcEEEEeCCCChhhHHHHHHHHHHcCCCeeEEEeCCCChhhhccHHHHHhCCCEEEEChHHHHHHHhcCCc
Confidence 345666 56778999998320 136899999999999999998653 268999999999888753221
Q ss_pred CCCceEEeCCCceEEECCEEEEEE-e-cCCCcCceEEEEEEcCCCCcccEEEEECCCCC
Q 001045 103 NPKFIYPLPIKIPVLIDGCEVVLV-G-ANHCPGAVQFLFKVPGRNGGFERYVHTGDFRF 159 (1176)
Q Consensus 103 ~~~~i~~l~~~~~~~i~~~~Vt~~-~-a~H~pGS~~flie~~~~~G~~~~IlYTGDfr~ 159 (1176)
... ..++ +..+.+++..|+++ . .||.+|+++|+++. .+++||||+-+
T Consensus 113 ~~~--~~~~-g~~~~l~~~~i~~~~~~pGHt~g~~~~~~~~-------~~~lf~GD~~~ 161 (228)
T 1jjt_A 113 QAT--NSFS-GVNYWLVKNKIEVFYPGPGHTPDNVVVWLPE-------RKILFGGCFIK 161 (228)
T ss_dssp CCS--EEEC-SSCCEEETTTEEEECCCCSSSTTCCEEEETT-------TTEEEEETTCC
T ss_pred Ccc--cccc-CcceEecCceEEEEecCCCCCCCcEEEEECC-------CcEEEEecccc
Confidence 111 2232 45566766667775 3 49999999998852 47999999854
No 80
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=98.66 E-value=4.5e-08 Score=115.06 Aligned_cols=108 Identities=17% Similarity=0.130 Sum_probs=87.8
Q ss_pred CCeeEe-CCccEEEecCCc--------------CCCCccEEEeccCChhhhCCcccC----CCCceEEeCHHHHHHHHHh
Q 001045 39 PPSKHV-PNTRFLIDAFRY--------------AADFSVSYFLSHFHSDHYTGLSPS----WSKGIIFCSEITSRLLSQI 99 (1176)
Q Consensus 39 p~~~~i-pg~~~liD~~~~--------------~~~~i~avfITHaH~DHiggL~~l----~~~~pIY~s~~T~~ll~~~ 99 (1176)
.+|++. .+..+|||.+.. ...+|++|++||.|.||+|+++.+ ..+.+|||++.+..++...
T Consensus 53 NsYLI~~~~~~vLIDtg~~~~~~~~l~~l~~~i~~~~IdyIi~TH~h~DH~G~l~~l~~~~~~~~~v~~s~~~~~~l~~~ 132 (410)
T 4dik_A 53 NAYLVKLNGANVLIDGWKGNYAKEFIDALSKIVDPKEITHIIVNHTEPDASGSLPATLKTIGHDVEIIASNFGKRLLEGF 132 (410)
T ss_dssp EEEEEECSSCEEEECCCCGGGHHHHHHHHTTTSCGGGCCEEECSCCCHHHHTTHHHHHHHHCSCCEEEECHHHHHHHHHH
T ss_pred EEEEEEECCeEEEEeCCCcchHHHHHHHHHHhcCcccCCEEEeCcCCcchhhhHHHHHHHcCCCCEEEeCHHHHHHHHhh
Confidence 456663 566799999732 125799999999999999999864 3468999999999999987
Q ss_pred hccCCCceEEeCCCceEEECCEEEEEEec-C-CCcCceEEEEEEcCCCCcccEEEEECCC
Q 001045 100 LNINPKFIYPLPIKIPVLIDGCEVVLVGA-N-HCPGAVQFLFKVPGRNGGFERYVHTGDF 157 (1176)
Q Consensus 100 l~~~~~~i~~l~~~~~~~i~~~~Vt~~~a-~-H~pGS~~flie~~~~~G~~~~IlYTGDf 157 (1176)
++.. .+..+..|+.+.+|+.+++++++ + |.||++.++. + ++|||||+
T Consensus 133 ~~~~--~~~~v~dGd~l~lG~~~L~~i~tPg~H~p~~~~~y~---~------~iLFsgD~ 181 (410)
T 4dik_A 133 YGIK--DVTVVKDGEEREIGGKKFKFVMTPWLHWPDTMVTYL---D------GILFSCDV 181 (410)
T ss_dssp HCCC--CEEECCTTCEEEETTEEEEEEECTTSSSTTCEEEEE---T------TEEEEETT
T ss_pred cCcc--ceeEecCCCEEeecceEEEEecCCCCCCCCCeeEEe---C------CceEcccc
Confidence 7643 46789999999999999999998 5 8999988774 1 49999997
No 81
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}
Probab=98.65 E-value=7.6e-09 Score=123.83 Aligned_cols=124 Identities=16% Similarity=0.188 Sum_probs=90.4
Q ss_pred CCCCCCCeeEe---CCccEEEecCCcC----------CCCccEEEeccCChhhhCCcccCCC--CceEEeCHHHHHHHHH
Q 001045 34 IPRTFPPSKHV---PNTRFLIDAFRYA----------ADFSVSYFLSHFHSDHYTGLSPSWS--KGIIFCSEITSRLLSQ 98 (1176)
Q Consensus 34 ~~r~~p~~~~i---pg~~~liD~~~~~----------~~~i~avfITHaH~DHiggL~~l~~--~~pIY~s~~T~~ll~~ 98 (1176)
......+|.+. .+..++||++... ..+|++||+||.|.||++|+..+.. +.+||+++.+...+.
T Consensus 33 ~~~~~nsyli~~~~~~~~vlID~g~~~~~~~~~l~~~g~~i~~Il~TH~H~DH~gg~~~l~~~~~a~v~~~~~~~~~~~- 111 (466)
T 3r2u_A 33 KHLSQASYLIGCQKTGEAMIIDPIRDLSSYIRVADEEGLTITHAAETHIHADFASGIRDVAIKLNANIYVSGESDDTLG- 111 (466)
T ss_dssp TTTTEEEEEEEETTTCEEEEESCCSCCHHHHHHHHHHTCEEEEEECSSCCSSSCCCHHHHHHHHCCEEEEECCSCTTTS-
T ss_pred CCccceEEEEEeCCCCEEEEEcCCCCHHHHHHHHHHCCCeeeEEEECCCChhhhccHHHHHHhhCCeEEECcchhhhhc-
Confidence 34455666663 4567999998321 1369999999999999999987543 689999987543222
Q ss_pred hhccCCCceEEeCCCceEEECCEEEEEEec-CCCcCceEEEEEEcC--CCCcccEEEEECCCCCcc
Q 001045 99 ILNINPKFIYPLPIKIPVLIDGCEVVLVGA-NHCPGAVQFLFKVPG--RNGGFERYVHTGDFRFCK 161 (1176)
Q Consensus 99 ~l~~~~~~i~~l~~~~~~~i~~~~Vt~~~a-~H~pGS~~flie~~~--~~G~~~~IlYTGDfr~~~ 161 (1176)
+...+.....+..|+.+.+++++|+++.+ ||.||+++|++...+ .++ .+++||||+-+..
T Consensus 112 -~~~~~~~~~~~~~g~~l~~g~~~l~vi~tPGHT~g~~~~~~~~~~~~~~~--~~~lftGD~lf~~ 174 (466)
T 3r2u_A 112 -YKNMPNHTHFVQHNDDIYVGNIKLKVLHTPGHTPESISFLLTDEGAGAQV--PMGLFSGDFIFVG 174 (466)
T ss_dssp -CCSCCTTCEEECTTCEEEETTEEEEEEECCSSSTTCEEEEEECGGGTCCS--CCEEEEETTBCSS
T ss_pred -cccCCCCCEEeCCCCEEEECCEEEEEEECCCCCCCCEEEEEcCCCccCCC--ceEEEECCcccCC
Confidence 11112246788899999999999999998 799999999998642 012 4699999986543
No 82
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=98.46 E-value=2.5e-07 Score=115.18 Aligned_cols=116 Identities=9% Similarity=0.057 Sum_probs=82.7
Q ss_pred CCCeeEe-CCccEEEecCCc---------------CCCCccEEEeccCChhhhCCcccCC-------CCceEEeCHHHHH
Q 001045 38 FPPSKHV-PNTRFLIDAFRY---------------AADFSVSYFLSHFHSDHYTGLSPSW-------SKGIIFCSEITSR 94 (1176)
Q Consensus 38 ~p~~~~i-pg~~~liD~~~~---------------~~~~i~avfITHaH~DHiggL~~l~-------~~~pIY~s~~T~~ 94 (1176)
..++.+. ++..++||++.. ...+|++|++||.|.||+||+..+. .+.+||+++.+.+
T Consensus 123 ~N~ylI~~~~g~iLIDtG~~~~~a~~~l~~i~~~~~~~~I~~IIlTH~H~DH~GG~~~l~~~~~~~~~~a~V~a~~~~~~ 202 (658)
T 2cfu_A 123 ANITFIRGDSGWIVVDTLTTPATARAAYELVSRELGERPIRTVIYSHAHADHFGGVRGLVEPQQVASGAVQIIAPAGFME 202 (658)
T ss_dssp SCEEEEECSSSEEEECCCSSHHHHHHHHHHHHHHHCCCCEEEEECSBSCHHHHTTGGGTCCHHHHHTTSSEEEEETTHHH
T ss_pred eEEEEEEECCEEEEEECCCCHHHHHHHHHHHHhhCCCCCceEEEECCCChhhhCCHHHHHhhhhccCCCCEEEEchhHHH
Confidence 4455553 456799999721 1367999999999999999998764 3689999998766
Q ss_pred HHHH---------------hhcc--CC----------------------CceEEe-CCCceEEECCEEEEEEec-CC-Cc
Q 001045 95 LLSQ---------------ILNI--NP----------------------KFIYPL-PIKIPVLIDGCEVVLVGA-NH-CP 132 (1176)
Q Consensus 95 ll~~---------------~l~~--~~----------------------~~i~~l-~~~~~~~i~~~~Vt~~~a-~H-~p 132 (1176)
.+.. .++. +. .....+ ..|+.+.+++.+++++.+ || .|
T Consensus 203 ~~~~e~~~~g~~~~~r~~~~~g~~lp~~~~~~v~~~l~~~~~~g~~~~~~p~~~~~~dG~~l~lgg~~l~vi~tPGHhTp 282 (658)
T 2cfu_A 203 AAIKENVLAGNAMMRRATYQYGTQLPKGPQGQVDMAIGKGLARGPLSLLAPTRLIEGEGEDLVLDGVPFTFQNTPGTESP 282 (658)
T ss_dssp HHC---CTTHHHHHHHHHHHTTTTSCBSTTSBCCCSSSSCCCCSCCCCCCCSEEECTTEEEEEETTEEEEEEECTTSSSS
T ss_pred HHhhhhhhhhhHHHHHHHHHhccCCChhhhhhhhhcccccccCCCccCCCCcEEEecCceEEEECCEEEEEEeCCCCCCC
Confidence 5410 1121 00 011334 466788899999999887 78 99
Q ss_pred CceEEEEEEcCCCCcccEEEEECCCCCc
Q 001045 133 GAVQFLFKVPGRNGGFERYVHTGDFRFC 160 (1176)
Q Consensus 133 GS~~flie~~~~~G~~~~IlYTGDfr~~ 160 (1176)
|+++|++.. .+++||||.-+.
T Consensus 283 g~i~~~~p~-------~~vLftGD~v~~ 303 (658)
T 2cfu_A 283 AEMNIWLPR-------QKALLMAENVVG 303 (658)
T ss_dssp SBEEEEETT-------TTEEECTTTSCS
T ss_pred CcEEEEECC-------CCEEEEeccccc
Confidence 999998852 479999997653
No 83
>4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic, hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A* 3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A
Probab=98.44 E-value=1.1e-07 Score=105.39 Aligned_cols=114 Identities=10% Similarity=-0.001 Sum_probs=77.5
Q ss_pred CeeEe-CCccEEEecCC--------------cCCCCccEEEeccCChhhhCCcccCC-CCceEEeCHHHHHHHHHhhccC
Q 001045 40 PSKHV-PNTRFLIDAFR--------------YAADFSVSYFLSHFHSDHYTGLSPSW-SKGIIFCSEITSRLLSQILNIN 103 (1176)
Q Consensus 40 ~~~~i-pg~~~liD~~~--------------~~~~~i~avfITHaH~DHiggL~~l~-~~~pIY~s~~T~~ll~~~l~~~ 103 (1176)
+|.+. .+..++||.+. ....+|++|++||+|.||+||+..+. ...++|+++.+..++.......
T Consensus 77 ~ylv~~~~~~ilIDtg~~~~~~~~l~~~i~~~~~~~I~~Ii~TH~H~DH~gg~~~l~~~~~~v~~~~~~~~~~~~~~~~~ 156 (270)
T 4eyb_A 77 GLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMVA 156 (270)
T ss_dssp EEEEEETTEEEEESCCSSHHHHHHHHHHHHHHTCCCEEEEEECSSSHHHHTTHHHHHHTTCEEEEEHHHHHHGGGGTCCC
T ss_pred EEEEEECCEEEEEeCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCChhhcCcHHHHHHCCCeEEECHHHHHHHHhcCccc
Confidence 34443 45568999861 12357999999999999999998753 3689999999998877543221
Q ss_pred CCce------EEeCCCceEEECCEEEEEEecCCCcCceEEEEEEcCCCCcccEEEEECCCCCc
Q 001045 104 PKFI------YPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFC 160 (1176)
Q Consensus 104 ~~~i------~~l~~~~~~~i~~~~Vt~~~a~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~ 160 (1176)
.... ..++.+..+..+++.+.....+|.||++++++.. .++|||||+-+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~pgHT~g~~~~~~~~-------~~vLfsGD~l~~ 212 (270)
T 4eyb_A 157 AQHSLTFAANGWVEPATAPNFGPLKVFYPGPGHTSDNITVGIDG-------TDIAFGGCLIKD 212 (270)
T ss_dssp CSEEECBCTTSBBCGGGSTTCTTEEEECCCSSSSSSCCEEEETT-------SSEEECTTTCCC
T ss_pred cccccCCCCceeecCceeeecCceeEEecccccCCCCEEEEecC-------CcEEEEeCeecC
Confidence 1111 1122233334456666666679999999988753 469999997543
No 84
>2p97_A Hypothetical protein; putative metal-dependent hydrolase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.157.1.12
Probab=98.16 E-value=4e-07 Score=96.21 Aligned_cols=108 Identities=18% Similarity=0.119 Sum_probs=76.9
Q ss_pred CCCCeeE-eCCccEEEecCCcCC---------CCccEEEeccCChhhhCCcccCC--CCceEEeCHHHHHHHHHhhccCC
Q 001045 37 TFPPSKH-VPNTRFLIDAFRYAA---------DFSVSYFLSHFHSDHYTGLSPSW--SKGIIFCSEITSRLLSQILNINP 104 (1176)
Q Consensus 37 ~~p~~~~-ipg~~~liD~~~~~~---------~~i~avfITHaH~DHiggL~~l~--~~~pIY~s~~T~~ll~~~l~~~~ 104 (1176)
...++.+ .++..++||++.... .++++|++||. ||++|+..+. .+.+||+++.+.+.+.. .
T Consensus 23 ~~n~~li~~~~~~iliD~g~~~~~~~~~l~~~g~i~~ii~TH~--DH~gg~~~~~~~~~a~v~~~~~~~~~~~~----~- 95 (201)
T 2p97_A 23 DFNGFAWIRPEGNILIDPVALSNHDWKHLESLGGVVWIVLTNS--DHVRSAKEIADQTYTKIAGPVAEKENFPI----Y- 95 (201)
T ss_dssp EEEEEEECCTTCCEEESCCCCCHHHHHHHHHTTCCSEEECSSG--GGCTTHHHHHHHSCCEEEEEGGGTTSCSS----C-
T ss_pred ceeEEEEEeCCeeEEEECCCCcHHHHHHHHhcCCCCEEEECCc--hhhhhHHHHHHhcCCEEEEcHhHhhhhcc----c-
Confidence 3445655 466789999983211 27999999999 9999998653 25899999987654321 1
Q ss_pred CceEEeCCCceEEECCEEEEEEecCCCcCceEEEEEEcCCCCcccEEEEECCCCCcc
Q 001045 105 KFIYPLPIKIPVLIDGCEVVLVGANHCPGAVQFLFKVPGRNGGFERYVHTGDFRFCK 161 (1176)
Q Consensus 105 ~~i~~l~~~~~~~i~~~~Vt~~~a~H~pGS~~flie~~~~~G~~~~IlYTGDfr~~~ 161 (1176)
....+..++.+. .++++...|+||.+|+++|+++. +++||||+-+..
T Consensus 96 -~~~~~~~g~~~~-~~~~~~~~p~gHt~g~~~~~~~~--------~~lf~GD~~~~~ 142 (201)
T 2p97_A 96 -CDRWLSDGDELV-PGLKVMELQGSKTPGELALLLEE--------TTLITGDLVRAY 142 (201)
T ss_dssp -CSEEECTTCBSS-TTEEEEEECSSSSTTEEEEEETT--------TEEEECSSEEBS
T ss_pred -CceecCCCCEEc-ceEEEEECCCCCCCCcEEEEEcC--------CEEEECcccccc
Confidence 124555565543 26888888889999999998751 499999985543
No 85
>2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II; metal-dependent hydrolases of the beta-lactamase superfamily hydrolase; 2.10A {Thermoanaerobacter tengcongensis}
Probab=98.15 E-value=4.3e-06 Score=93.35 Aligned_cols=127 Identities=14% Similarity=0.009 Sum_probs=77.7
Q ss_pred CCCeeE-eCCccEEEecCCc------------CCCCccEEEeccCChhhhCCcccCC---CCceEEeCHHHHHHHHHhhc
Q 001045 38 FPPSKH-VPNTRFLIDAFRY------------AADFSVSYFLSHFHSDHYTGLSPSW---SKGIIFCSEITSRLLSQILN 101 (1176)
Q Consensus 38 ~p~~~~-ipg~~~liD~~~~------------~~~~i~avfITHaH~DHiggL~~l~---~~~pIY~s~~T~~ll~~~l~ 101 (1176)
..++.+ .++..++||++.. ...++++|||||.|.||++|++.+. .+.+||+++.+.+ ..+.
T Consensus 33 g~s~li~~~~~~iLiD~G~~~~~~~~l~~~g~~~~~i~~v~lTH~H~DH~ggl~~~~~~~~~~~v~~~~~~~~---~~~~ 109 (284)
T 2p4z_A 33 GLSLLLKKGNKEIVVDTGQSENFIKNCGLMGIDVGRIKKVVLTHGHYDHIGGLKGLLERNPEVKIYTHKEILN---KKYA 109 (284)
T ss_dssp SCEEEEEETTEEEEECCCSSTHHHHHHHHTTCCGGGCCEEECCCSCHHHHTTHHHHHHHCTTCEEEEEGGGGS---CEEE
T ss_pred EEEEEEEECCeEEEEeCCCCHHHHHHHHHcCCChhhCCEEEECCCCchhhccHHHHHHHcCCCceecCHHHHH---HHhc
Confidence 345666 5788899999731 1246899999999999999998753 4789999998853 1111
Q ss_pred --------cC----------CCceEEeCCCceEEEC-C-EEEEEEecCCCcCc---eEEEEEEcCCCCcccEEEEECCCC
Q 001045 102 --------IN----------PKFIYPLPIKIPVLID-G-CEVVLVGANHCPGA---VQFLFKVPGRNGGFERYVHTGDFR 158 (1176)
Q Consensus 102 --------~~----------~~~i~~l~~~~~~~i~-~-~~Vt~~~a~H~pGS---~~flie~~~~~G~~~~IlYTGDfr 158 (1176)
+. ...+..++ .++++. + +.+.+++..|.... .+|.++ .+.|++|.
T Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~i~~gi~~i~~~~~~h~~~~~~g~~~~~~---------~~~y~~D~- 177 (284)
T 2p4z_A 110 MRKGGQFEEIGFDLSFYEKYKNNFVLID--KDAEIEEGFYVITNTDITYDNEFTTKNFFVEK---------EGKRIPDK- 177 (284)
T ss_dssp ECSSSCEEECSCCHHHHHHHGGGEEEES--SCEEEETTEEEECSCCCCSCCHHHHTTEEEEE---------TTEEEECC-
T ss_pred cCccccccccccccchhhhcCceEEEeC--CCeEEeCCEEEEeeeCCccccccCCCceEEEc---------CCCEecCC-
Confidence 00 01233333 345553 4 56667777773221 246554 14689993
Q ss_pred CcccccchhhhhccCCCc--EEEEeCCC
Q 001045 159 FCKTMLLQPVMNEFAGCD--AVFLDTTY 184 (1176)
Q Consensus 159 ~~~~~~~~~~l~~~~~vD--vLI~EsTy 184 (1176)
+.+.. ..-+.+.| +||++|+.
T Consensus 178 ~~de~-----~~~~~~~dglvli~gcsH 200 (284)
T 2p4z_A 178 FLDEV-----FVVVKEEDGINVVTGCSH 200 (284)
T ss_dssp CTTCC-----EEEEEETTEEEEEESSCT
T ss_pred CCCce-----EEEEEcCCcEEEEECCCC
Confidence 33221 11124678 77888774
No 86
>1ta8_A DNA ligase, NAD-dependent; nucleotidyl transferase fold; HET: DNA NMN; 1.80A {Enterococcus faecalis} SCOP: d.142.2.2 PDB: 3ba8_A* 1tae_A* 3ba9_A* 3baa_A* 3bab_A*
Probab=98.11 E-value=5.8e-06 Score=93.51 Aligned_cols=173 Identities=20% Similarity=0.203 Sum_probs=111.0
Q ss_pred cCCCCc-ccCChhHH---HHhcc-----CceEEEEEecceeEEEEEEeeCCe-EEEEcC----CCccCCCCchhHHHHHH
Q 001045 959 KPMLAK-ITNGVPQV---LKLFQ-----NKAFTCEYKYDGQRAQIHKLVDGT-VRIFSR----NGDETTSRFPDLISIIN 1024 (1176)
Q Consensus 959 ~PMLA~-~~~~~~~~---~~~~~-----~~~f~~E~KyDGeR~QiH~~~~g~-V~ifSR----~g~d~T~~ypdl~~~l~ 1024 (1176)
.|||.- .+.+.+++ .+++. .-.|+||+|+||..+-+.+ .+|. |+..|| .|+|+|....-|.. |+
T Consensus 84 ~pMlSL~n~f~~eel~~w~~rv~~~l~~~~~~~~EpKiDGlaisL~Y-e~G~Lv~a~TRGDG~~GEDVT~nvrtI~~-IP 161 (332)
T 1ta8_A 84 IPMYSLNDGFSKEDIFAFDERVRKAIGKPVAYCCELKIDGLAISLRY-ENGVFVRGATRGDGTVGENITENLRTVRS-VP 161 (332)
T ss_dssp SCCCCCCEECSHHHHHHHHHHHHHHHSSCCCEEEEEEECSEEEEEEE-ETTEEEEEEECTTSSEEEBCHHHHTTCTT-SC
T ss_pred CcCCCccccCCHHHHHHHHHHHHHhcCCCceEEEeeeecceEEEEEE-ECCEEEEEEcCCCCccchhHHHHHHHhcC-Cc
Confidence 499863 33344433 22221 1359999999999999999 5777 899999 88999976543322 22
Q ss_pred hhcCCCCCCeEEEEEEEEEecCCCCcccChHHHhhh-hcCC-----------------CCchhhhcccccceEEEEEEee
Q 001045 1025 EFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSR-ERGG-----------------KDSVITIKSVKVDICVFVFDIM 1086 (1176)
Q Consensus 1025 ~~~~~~~~~~ILDGElVa~d~~~g~~~~pFq~L~~R-~r~~-----------------~~~~i~~~~~~~~v~~~vFDiL 1086 (1176)
..+. .+..+.+-||++.- ...|..|..+ ...+ .+..+ ....++.||+|++.
T Consensus 162 ~~L~-~p~~leVRGEv~m~-------~~~F~~lN~~~~~~g~~~faNPRNaAAGsLrqld~~i---ta~R~L~ff~y~i~ 230 (332)
T 1ta8_A 162 MRLT-EPISVEVRGECYMP-------KQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKI---VAKRNLNTFLYTVA 230 (332)
T ss_dssp SBCS-SCCCEEEEEEEECC-------HHHHHHHHHHHHHTTCCCCSSHHHHHHHHHTCSBHHH---HHTSCCEEEEEEES
T ss_pred cccC-CCCeEEEEEEEEEE-------HHHHHHHHHHHHhcCCccccChHHHHHHHHHccChhh---HhhCCCEEEEEecc
Confidence 2222 24569999999973 2457666432 1111 11111 12457999999995
Q ss_pred eeCCcccccCCHHHHHHHHHHhhcccCCCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhC------CCceEEEec
Q 001045 1087 FANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHS------SCEGIIVKS 1160 (1176)
Q Consensus 1087 ~lnG~~Ll~~Pl~eRr~lL~~~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~------g~EGlmvK~ 1160 (1176)
..+|... .+..++.+.|+++- -+......+ ..+.+++.++++...+. .-.|||+|-
T Consensus 231 ~~~~~~~--~t~~e~l~~L~~~G-F~v~~~~~~---------------~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKv 292 (332)
T 1ta8_A 231 DFGPMKA--KTQFEALEELSAIG-FRTNPERQL---------------CQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKV 292 (332)
T ss_dssp CCTTCCC--SBHHHHHHHHHHTT-CCCCTTCEE---------------ESSHHHHHHHHHHHHHTGGGSSSCEEEEEEEE
T ss_pred cccCCCC--CCHHHHHHHHHHcC-CCCCCcceE---------------eCCHHHHHHHHHHHHHHHhcCCCCCCcEEEEe
Confidence 4444332 68999999999976 333222221 24688999999888665 668999997
Q ss_pred CC
Q 001045 1161 LD 1162 (1176)
Q Consensus 1161 ld 1162 (1176)
-+
T Consensus 293 n~ 294 (332)
T 1ta8_A 293 NE 294 (332)
T ss_dssp SB
T ss_pred cC
Confidence 54
No 87
>1b04_A Protein (DNA ligase); DNA replication; 2.80A {Geobacillus stearothermophilus} SCOP: d.142.2.2
Probab=98.05 E-value=6.1e-06 Score=92.91 Aligned_cols=168 Identities=18% Similarity=0.254 Sum_probs=106.2
Q ss_pred ceEEEEEecceeEEEEEEeeCC-eEEEEcC----CCccCCCCchhHHHHHHhhcCCCCCCeEEEEEEEEEecCCCCcccC
Q 001045 979 KAFTCEYKYDGQRAQIHKLVDG-TVRIFSR----NGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMS 1053 (1176)
Q Consensus 979 ~~f~~E~KyDGeR~QiH~~~~g-~V~ifSR----~g~d~T~~ypdl~~~l~~~~~~~~~~~ILDGElVa~d~~~g~~~~p 1053 (1176)
-.|+||+|+||..+-+++. +| =|+..|| .|+|+|....-|.. |+..+. .+..+.+-||++.- ...
T Consensus 107 ~~~~~EpKiDGlaisL~Ye-~G~Lv~a~TRGDG~~GEDVT~nvrtI~~-IP~~L~-~p~~levRGEv~m~-------~~~ 176 (318)
T 1b04_A 107 AAYVCELAIDGLAVSVRYE-DGYFVQGATRGDGTTGEDITENLKTIRS-LPLRLK-EPVSLEARGEAFMP-------KAS 176 (318)
T ss_dssp CCEEEEEEESSEEEEEEEE-TTEEEEEEECTTSSCEEBCHHHHHTCTT-SCSBCS-SCCCEEEEEEEECC-------HHH
T ss_pred ceEEEEEecccEEEEEEEE-CCEEEEEEccCCCcccHHHHHhHHHhcC-CCcccC-CCCeEEEEEEEEEE-------HHH
Confidence 3599999999999999995 66 5899999 88999876543322 222222 24569999999973 246
Q ss_pred hHHHhhh-hcCCCC--c--------hhhhc----ccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhcccCCCcEE
Q 001045 1054 FQELSSR-ERGGKD--S--------VITIK----SVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQ 1118 (1176)
Q Consensus 1054 Fq~L~~R-~r~~~~--~--------~i~~~----~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~~~~~i~ 1118 (1176)
|..|..+ ...+.. . ..... ....++.||+|++...+|... .+..++.+.|+++- -+......
T Consensus 177 F~~lN~~~~~~g~~~faNpRNaAAGsLrqld~~ita~R~L~ff~y~~~~~~~~~~--~t~~e~l~~L~~~G-f~v~~~~~ 253 (318)
T 1b04_A 177 FLRLNEERKARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLADAEALGI--ASHSEALDYLQALG-FKVNPERR 253 (318)
T ss_dssp HHHHHHHHHHC--CCCSCHHHHHHHHHHSSCHHHHHHTCCEEEEEEETTTTTTTC--CBHHHHHHHHHHTT-CCCCTTCE
T ss_pred HHHHHHHHHHcCCCccchhhHHHHHHHHccChhhHhhCCCEEEEEecccccCCCC--CCHHHHHHHHHHcC-CCCCCcce
Confidence 7666432 111000 0 00000 124579999999953333232 68999999999976 33322222
Q ss_pred EeEEEEEcCCCCCCccccCHHHHHHHHHHHHh------CCCceEEEecCCCCCCccc----CCCCCCC
Q 001045 1119 YAKEMTVEGDDNCLTSDVSLSKINNFLEEALH------SSCEGIIVKSLDVDAGYSP----SKRSDSW 1176 (1176)
Q Consensus 1119 ~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~------~g~EGlmvK~ld~~s~Y~p----GkRs~~W 1176 (1176)
+ ..+.+++.++++...+ -.-.|||+|--+ -.|.- ..|+..|
T Consensus 254 ~---------------~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn~--~~~q~~LG~t~k~PRW 304 (318)
T 1b04_A 254 R---------------CANIDEVIAFVSEWHDKRPQLPYEIDGIVIKVDS--FAQQRALGATAKSPRW 304 (318)
T ss_dssp E---------------ESSHHHHHHHHHHHHHHSTTCSSCEEEEEEEECB--HHHHHHHCCCSSSCTT
T ss_pred E---------------eCCHHHHHHHHHHHHHHHhhCCCCCCcEEEEecC--HHHHHHhCCcCCCCCc
Confidence 1 2467899999988764 466899999754 33332 3456566
No 88
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=97.26 E-value=7.5e-07 Score=110.56 Aligned_cols=114 Identities=16% Similarity=0.088 Sum_probs=76.5
Q ss_pred CCeeEe-CCccEEEecCCc---------------CCCCccEEEeccCChhhhCCcccCC-------CCceEEeCHHHHHH
Q 001045 39 PPSKHV-PNTRFLIDAFRY---------------AADFSVSYFLSHFHSDHYTGLSPSW-------SKGIIFCSEITSRL 95 (1176)
Q Consensus 39 p~~~~i-pg~~~liD~~~~---------------~~~~i~avfITHaH~DHiggL~~l~-------~~~pIY~s~~T~~l 95 (1176)
.++.+. .+..++||++.. ...+|++|++||.|.||+||+..+. .+.+||+++.+.+.
T Consensus 134 N~~lI~~~~~~iLIDtG~~~~~a~~~l~~i~~~~~~~~I~~IilTH~H~DH~gG~~~l~~~~~~~~~~a~I~a~~~~~e~ 213 (668)
T 2yhe_A 134 NMTIIEGDSGLVLIDTLTTAETARAALDLYFQHRPKKPIVAVVYSHSHIDHFGGARGIIDEADVKAGKVKVFAPSGFMEH 213 (668)
Confidence 344443 455688998721 1256889999999999999998765 35799999986321
Q ss_pred H--H-------------Hhhc--cCC-----------------C-------ceEEeCCCceEEECCEEEEEEec-C-CCc
Q 001045 96 L--S-------------QILN--INP-----------------K-------FIYPLPIKIPVLIDGCEVVLVGA-N-HCP 132 (1176)
Q Consensus 96 l--~-------------~~l~--~~~-----------------~-------~i~~l~~~~~~~i~~~~Vt~~~a-~-H~p 132 (1176)
+ . ..++ ++. . ....+..|+.+.+++.+++++.+ | |.|
T Consensus 214 ~~~e~~~~g~~~~~r~~~~~G~~lp~~~~~~~~~~l~~~~~~~~~~~~~~P~~~~~~dg~~l~lgg~~l~vi~tPG~Htp 293 (668)
T 2yhe_A 214 AVSENILAGTAMARRGQYQSGVMVPRGAQAQVDSGLFKTTATNATNTLVAPNVLIEKPYERHTVDGVELEFQLTLGSEAP 293 (668)
Confidence 1 1 0111 000 0 01112346677888888888877 4 999
Q ss_pred CceEEEEEEcCCCCcccEEEEECCCCC
Q 001045 133 GAVQFLFKVPGRNGGFERYVHTGDFRF 159 (1176)
Q Consensus 133 GS~~flie~~~~~G~~~~IlYTGDfr~ 159 (1176)
|+++|++.. .++++|||.-+
T Consensus 294 g~i~~~~p~-------~~vLftGD~~~ 313 (668)
T 2yhe_A 294 SDMNIYLPQ-------FKVLNTADNAP 313 (668)
Confidence 999998864 47999999754
No 89
>1zau_A DNA ligase; AMP; HET: DNA AMP; 3.15A {Mycobacterium tuberculosis}
Probab=97.61 E-value=4.7e-06 Score=94.17 Aligned_cols=174 Identities=18% Similarity=0.209 Sum_probs=108.0
Q ss_pred cCCCCcc-cCChhHH---HHhcc-----CceEEEEEecceeEEEEEEeeCCe-EEEEcC----CCccCCCCchhHHHHHH
Q 001045 959 KPMLAKI-TNGVPQV---LKLFQ-----NKAFTCEYKYDGQRAQIHKLVDGT-VRIFSR----NGDETTSRFPDLISIIN 1024 (1176)
Q Consensus 959 ~PMLA~~-~~~~~~~---~~~~~-----~~~f~~E~KyDGeR~QiH~~~~g~-V~ifSR----~g~d~T~~ypdl~~~l~ 1024 (1176)
.|||.-. +.+.+++ .+++. .-.|+||+|+||..+-+++. +|. |+..|| .|+|+|....-|.. |+
T Consensus 87 ~pMlSL~n~f~~eel~~f~~rv~~~l~~~~~~~~EpKiDGlaisL~Ye-~G~Lv~a~TRGDG~~GEDVT~nvrtI~~-IP 164 (328)
T 1zau_A 87 ERMLSLDNAFTADELAAWAGRIHAEVGDAAHYLCELKIDGVALSLVYR-EGRLTRASTRGDGRTGEDVTLNARTIAD-VP 164 (328)
T ss_dssp SCCCCCCCBSSHHHHHHHHHGGGTTTCSCSCEEEEEEECSEEEEEECG-GGBCCBCBBCTTSSEECBCHHHHHHSSS-CC
T ss_pred CCCCCccccCCHHHHHHHHHHHHHhcCCCcceEEeeecceEEEEEEEE-CCEEEEEEccCCCcccHHHHHHHHHhcC-CC
Confidence 4898642 2344443 33322 14699999999999999994 664 899999 88999876543321 22
Q ss_pred hhc-C----CCCCCeEEEEEEEEEecCCCCcccChHHHhhhhc-C-----------------CCCchhhhcccccceEEE
Q 001045 1025 EFC-K----PAAGTFILDAEVVAIDRKNGCKIMSFQELSSRER-G-----------------GKDSVITIKSVKVDICVF 1081 (1176)
Q Consensus 1025 ~~~-~----~~~~~~ILDGElVa~d~~~g~~~~pFq~L~~R~r-~-----------------~~~~~i~~~~~~~~v~~~ 1081 (1176)
..+ . ..+..+.+-||++.- ...|..|..+.. . ..+..+ ..+.++.||
T Consensus 165 ~~L~~g~~~~~p~~leVRGEv~m~-------~~~F~~lN~~~~~~g~~~faNPRNaAAGsLrqld~~i---ta~R~L~f~ 234 (328)
T 1zau_A 165 ERLTPGDDYPVPEVLEVRGEVFFR-------LDDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAV---TARRRLRMI 234 (328)
T ss_dssp SBCCCBTTBCCCSCCEEEEEEBCC-------HHHHHHHHHSCSSTTSCCCSSHHHHHHHHHTCSSHHH---HHHSCCBCC
T ss_pred hhhccCCcCCCCCeEEEEEEEEEE-------HHHHHHHHHHHHHcCCccccChHHHHHHHHHccChhh---hhcCcceEE
Confidence 212 1 114458999999973 235666543211 0 011111 123469999
Q ss_pred EEEeeeeCCcccccCCHHHHHHHHHHhhcccCCCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhC------CCce
Q 001045 1082 VFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHS------SCEG 1155 (1176)
Q Consensus 1082 vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~------g~EG 1155 (1176)
+|+|..+++... .+..++.+.|+++- -+.. +... ...+.+++.++++...+. .-.|
T Consensus 235 ~y~i~~~~~~~~--~t~~e~l~~L~~~G-f~v~------~~~~---------~~~~~~ev~~~~~~~~~~R~~l~y~iDG 296 (328)
T 1zau_A 235 CHGLGHVEGFRP--ATLHQAYLALRAWG-LPVS------EHTT---------LATDLAGVRERIDYWGEHRHEVDHEIDG 296 (328)
T ss_dssp CCBCCCCSSCCC--SBHHHHHHHHHTTT-CCCC------CCCC---------CBCHHHHHHHHHHHTTTTCSSCSSCEEE
T ss_pred EEeccccCCCCC--CCHHHHHHHHHHcC-CCCC------CceE---------EeCCHHHHHHHHHHHHHHHhcCCCCCce
Confidence 999965554322 57889999998875 2211 1111 135688999999888665 5689
Q ss_pred EEEecCC
Q 001045 1156 IIVKSLD 1162 (1176)
Q Consensus 1156 lmvK~ld 1162 (1176)
||+|--+
T Consensus 297 vViKvn~ 303 (328)
T 1zau_A 297 VVVKVDE 303 (328)
T ss_dssp EEEEECB
T ss_pred EEEEecC
Confidence 9999754
No 90
>1s68_A RNA ligase 2; ribonucleic acid ligase, RNA repair; HET: AMP; 1.90A {Enterobacteria phage T4} SCOP: d.142.2.4
Probab=97.59 E-value=9.5e-05 Score=81.05 Aligned_cols=109 Identities=11% Similarity=0.145 Sum_probs=70.9
Q ss_pred hccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCCCC----chhHHHH-------HHhhcC-CCCCCeEEEEEEEE
Q 001045 975 LFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSR----FPDLISI-------INEFCK-PAAGTFILDAEVVA 1042 (1176)
Q Consensus 975 ~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~~----ypdl~~~-------l~~~~~-~~~~~~ILDGElVa 1042 (1176)
.+.+..|++++|+||.-+-|.+ .++++.++||++.-.... +..+... +.+.+. ....+++|=||+++
T Consensus 24 ~~~~~~vvvtEKldG~N~~i~~-~~~~i~~~sR~~~l~~~~~f~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~GE~~G 102 (249)
T 1s68_A 24 GLTGGEWVAREKIHGTNFSLII-ERDKVTCAKRTGPILPAEDFFGYEIILKNYADSIKAVQDIMETSAVVSYQVFGEFAG 102 (249)
T ss_dssp TCSCSCEEEEECCCSEEEEEEE-ESSCEEEEETTEECCTTCCCTTTHHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEES
T ss_pred ccCCCCEEEEEEECCcceEEEE-ECCEEEEEeCCcccCCCCccchHHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEEcc
Confidence 3456789999999999999998 477899999999864321 2122221 122110 01368999999996
Q ss_pred EecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEee-eeCCcccccCCHHHHHHHHHHh
Q 001045 1043 IDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIM-FANGEQLLGYTLRQRRKYLKDL 1108 (1176)
Q Consensus 1043 ~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL-~lnG~~Ll~~Pl~eRr~lL~~~ 1108 (1176)
.. + .+ ++. .. +..|++|||. ..++..-.-+|+.+|+++++.+
T Consensus 103 ~~------------I----q~----~v~---Y~-~~~FyvFdI~~~~~~g~~~~l~~~~~~~l~~~~ 145 (249)
T 1s68_A 103 PG------------I----QK----NVD---YC-DKDFYVFDIIVTTESGDVTYVDDYMMESFCNTF 145 (249)
T ss_dssp TT------------T----SS----SCC---CC-SCEEEEEEEEEEETTCCEEECCHHHHHHHHHHH
T ss_pred cc------------c----cC----Ccc---cC-CCeEEEEEEEEecCCCccccCCHHHHHHHHHHC
Confidence 31 0 11 011 11 4589999986 4343323456999999999885
No 91
>4glw_A DNA ligase; inhibitor, ligase-ligase inhibitor complex; HET: DNA 0XT NMN; 2.00A {Streptococcus pneumoniae}
Probab=97.58 E-value=5.5e-05 Score=85.07 Aligned_cols=170 Identities=17% Similarity=0.223 Sum_probs=104.4
Q ss_pred cCCCCc-ccCChhHH---HHh----ccCceEEEEEecceeEEEEEEeeCCe-EEEEcCC----CccCCCCchhHHHHHHh
Q 001045 959 KPMLAK-ITNGVPQV---LKL----FQNKAFTCEYKYDGQRAQIHKLVDGT-VRIFSRN----GDETTSRFPDLISIINE 1025 (1176)
Q Consensus 959 ~PMLA~-~~~~~~~~---~~~----~~~~~f~~E~KyDGeR~QiH~~~~g~-V~ifSR~----g~d~T~~ypdl~~~l~~ 1025 (1176)
.|||.- .+.+.+++ .++ ++...|+||+|+||.-+-+.+. +|. ++.+||. |+|+|....-|. .|+.
T Consensus 74 ~pMlSL~n~~~~~el~~f~~r~~~~l~~~~~~~epKiDGlavsL~Y~-~G~L~~a~TRGDG~~GeDiT~n~~tI~-~IP~ 151 (305)
T 4glw_A 74 YPLYSLQDAFSREELDAFDARVRKEVAHPTYICELKIDGLSISLTYE-KGILVAGVTRGDGSIGENITENLKRVK-DIPL 151 (305)
T ss_dssp SCCCCCCEECSHHHHHHHHHHHTTTCSSCCEEEEEEECSEEEEEEEE-TTEEEEEEECTTSSEEEECHHHHTTST-TSCS
T ss_pred eeeeccCCcCCHHHHHHHHHHHHHhcCCCcEEEEeeecceEEEEEEe-CCeEEEEEecCCCcchhhHHHHHhhcc-CCcc
Confidence 488753 23344443 222 3456799999999999999994 676 8999999 899986533221 1222
Q ss_pred hcCCCCCCeEEEEEEEEEecCCCCcccChHHHhhh-hcC-----------------CCCchhhhcccccceEEEEEEeee
Q 001045 1026 FCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSR-ERG-----------------GKDSVITIKSVKVDICVFVFDIMF 1087 (1176)
Q Consensus 1026 ~~~~~~~~~ILDGElVa~d~~~g~~~~pFq~L~~R-~r~-----------------~~~~~i~~~~~~~~v~~~vFDiL~ 1087 (1176)
.+ +....+.+=||++.- ...|..+-.. ... ..+..+ ....++.||+|++..
T Consensus 152 ~l-~~~~~levRGEv~m~-------~~~F~~~n~~~~~~g~~~faNpRNaaAGslrq~d~~~---~~~r~L~f~~y~~~~ 220 (305)
T 4glw_A 152 TL-PEELDITVRGECYMP-------RASFDQVNQARQENGEPEFANPRNAAAGTLRQLDTAV---VAKRNLATFLYQEAS 220 (305)
T ss_dssp BC-SSCCCEEEEEEEECC-------HHHHHHHHHHHHHTTCCCCSSHHHHHHHHHSSSBHHH---HHHSCCEEEEEEESS
T ss_pred cC-CCcccccccceEEee-------hhhHHHHHHHHHhcCCccchhhhHHHhhhhhccCchh---hhhhcceEEEeeecc
Confidence 11 235578999999972 2356655322 110 011111 123469999999876
Q ss_pred eCCcccccCCHHHHHHHHHHhhcccCCCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhC----CC--ceEEEecC
Q 001045 1088 ANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHS----SC--EGIIVKSL 1161 (1176)
Q Consensus 1088 lnG~~Ll~~Pl~eRr~lL~~~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~----g~--EGlmvK~l 1161 (1176)
-+|. ....++.+.|+++- -.......+ ..+.+++.+++++..+. .+ -|||+|--
T Consensus 221 ~~~~----~s~~e~l~~L~~~G-f~~~~~~~~---------------~~~~~ev~~~~~~~~~~R~~l~y~iDGiVikvn 280 (305)
T 4glw_A 221 PSTR----DSQEKGLKYLEQLG-FVVNPKRIL---------------AENIDEIWNFIQEVGQERENLPYDIDGVVIKVN 280 (305)
T ss_dssp SCSS----SBHHHHHHHHHHHT-CCCCCCCEE---------------ESSHHHHHHHHHHHHHHGGGSSSCEEEEEEEEC
T ss_pred cccc----chHHHHHHHHHhCC-CccCCceEE---------------eCCHHHHHHHHHHHHHHhhcCCCCCCeEEEEEe
Confidence 6553 36788899998874 222222111 24678888888876543 23 39999954
No 92
>2hvq_A ORF1, hypothetical 37.6 kDa protein in GP24-HOC intergenic region; RNA, ligase, lysine adenylate; HET: APK; 2.40A {Enterobacteria phage T4} PDB: 2hvr_A* 2hvs_A*
Probab=97.56 E-value=0.00019 Score=81.86 Aligned_cols=109 Identities=10% Similarity=0.088 Sum_probs=71.5
Q ss_pred hccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCCC-C---chhHHHH----HHhhcCCC----CCCeEEEEEEEE
Q 001045 975 LFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTS-R---FPDLISI----INEFCKPA----AGTFILDAEVVA 1042 (1176)
Q Consensus 975 ~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~-~---ypdl~~~----l~~~~~~~----~~~~ILDGElVa 1042 (1176)
.+.+..|++++|+||..+-|.+ .++++.++||++.-... . |..++.. +..++... ..+++|=||+++
T Consensus 25 ~l~~~~vvvtEKlDG~N~~i~~-~~~~i~~~sR~~~l~~~~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~i~GE~~G 103 (335)
T 2hvq_A 25 GLTGGEWVAREXIHGTNFSLII-ERDKVTCAKRTGPILPAEDFFGYEIILKNYADSIKAVQDIMETSAVVSYQVFGEFAG 103 (335)
T ss_dssp TCSCSCEEEEECCSSEEEEEEE-ETTEEEEEETTEECCTTCCCTTTHHHHHHHHHHHHHHHTTHHHHTEEEEEEEEEEES
T ss_pred ccCCCcEEEEEEecCcceEEEE-ECCEEEEecCCcccCCccccchHHHHHHHHHHHHHHHHHHhhccCCCcEEEEEEEcc
Confidence 4556789999999999999998 57889999999986431 1 1112222 22222111 268999999997
Q ss_pred EecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEee-eeCCcccccCCHHHHHHHHHHh
Q 001045 1043 IDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIM-FANGEQLLGYTLRQRRKYLKDL 1108 (1176)
Q Consensus 1043 ~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL-~lnG~~Ll~~Pl~eRr~lL~~~ 1108 (1176)
..- .+ ++. .. +..|++|||. ..++..-.-+|+.+|+++++.+
T Consensus 104 ~~I----------------q~----~i~---Y~-~~~FyvFDI~~~~~~~~~~~l~~~~~~~l~~~~ 146 (335)
T 2hvq_A 104 PGI----------------QK----NVD---YG-DKDFYVFDIIVTTESGDVTYVDDYMMESFCNTF 146 (335)
T ss_dssp BTT----------------BS----SCC---CC-SSEEEEEEEEEEETTCCEEECCHHHHHHHHHHH
T ss_pred Ccc----------------cC----Ccc---cC-CCeEEEEEEEEecCCCceeeCCHHHHHHHHHHc
Confidence 421 11 011 11 4589999996 3343223457999999999985
No 93
>3uq8_A DNA ligase; adenylated protein, ATP-grAsp, rossman fold, adenylation; HET: DNA NAD AMP; 1.70A {Haemophilus influenzae} PDB: 3pn1_A* 3bac_A*
Probab=97.18 E-value=0.0016 Score=73.40 Aligned_cols=155 Identities=19% Similarity=0.238 Sum_probs=99.1
Q ss_pred ceEEEEEecceeEEEEEEeeCCe-EEEEcC----CCccCCCCchhHHHHHHhhcCC--CCCCeEEEEEEEEEecCCCCcc
Q 001045 979 KAFTCEYKYDGQRAQIHKLVDGT-VRIFSR----NGDETTSRFPDLISIINEFCKP--AAGTFILDAEVVAIDRKNGCKI 1051 (1176)
Q Consensus 979 ~~f~~E~KyDGeR~QiH~~~~g~-V~ifSR----~g~d~T~~ypdl~~~l~~~~~~--~~~~~ILDGElVa~d~~~g~~~ 1051 (1176)
-.|+||+|+||.-+-+.+. +|. |+..|| .|+|+|....-|. .|+..+.. .+..+.+=||++.- .
T Consensus 107 ~~~~~EpKiDGlaisL~Ye-~G~Lv~a~TRGDG~~GEDVT~nvrtI~-~IPl~L~~~~~p~~leVRGEv~m~-------~ 177 (322)
T 3uq8_A 107 LTFCCEPKLDGLAVSILYV-NGELTQAATRGDGTTGEDITANIRTIR-NVPLQLLTDNPPARLEVRGEVFMP-------H 177 (322)
T ss_dssp CEEEEEEEESSEEEEEEEE-TTEEEEEEECTTSSEEEBCHHHHHTCT-TSCSBCSCSSCCSEEEEEEEEECC-------H
T ss_pred ceEEEEEeeceEEEEEEEe-CCEEEEEEecCCCccchhHHHHHHHhc-CCCccccCCCCCceEEEEEEEEee-------H
Confidence 3699999999999999994 665 899999 5788886532221 12221111 24568899999972 2
Q ss_pred cChHHHhhh-hcCC-----------------CCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhcccC
Q 001045 1052 MSFQELSSR-ERGG-----------------KDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEK 1113 (1176)
Q Consensus 1052 ~pFq~L~~R-~r~~-----------------~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~~ 1113 (1176)
..|..|-.+ ...+ .+..+ ....++.||+|.+...+|..+ .....++.+.|+++- -+.
T Consensus 178 ~~F~~lN~~~~~~g~~~faNPRNaAAGsLRqld~~i---ta~R~L~ff~y~~~~~~~~~~-~~t~~e~l~~L~~~G-f~v 252 (322)
T 3uq8_A 178 AGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNI---TSKRPLVLNAYGIGIAEGVDL-PTTHYARLQWLKSIG-IPV 252 (322)
T ss_dssp HHHHHHHHHHHHTTCCCCSSHHHHHHHHHTCSCHHH---HTTSCCEEEEEEEEEEESCCC-CSBHHHHHHHHHHTT-CCC
T ss_pred HHHHHHHHHHHHhCCccccchhHHHHHHHhhcChhh---hhcCccEEEEEeccccCCCCC-CCCHHHHHHHHHHcC-CCC
Confidence 456666422 1111 01111 124579999999987766432 357899999999874 222
Q ss_pred CCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhCC------CceEEEecCC
Q 001045 1114 MGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSS------CEGIIVKSLD 1162 (1176)
Q Consensus 1114 ~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~g------~EGlmvK~ld 1162 (1176)
...... ..+.+++.++++...+.+ --|||+|--+
T Consensus 253 ~~~~~~---------------~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn~ 292 (322)
T 3uq8_A 253 NPEIRL---------------CNGADEVLGFYRDIQNKRSSLGYDIDGTVLKIND 292 (322)
T ss_dssp CTTCEE---------------EESHHHHHHHHHHHHHTTTTTSSCEEEEEEEESB
T ss_pred CCCcEE---------------eCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEecC
Confidence 222221 246889999998875543 3699999643
No 94
>3jsl_A DNA ligase; NAD+-dependent, DNA damage, DNA repair, DNA replication, magnesium, manganese, metal-binding, NAD, zinc; HET: DNA; 1.80A {Staphylococcus aureus} SCOP: d.142.2.2 PDB: 3jsn_A*
Probab=97.15 E-value=0.00035 Score=78.57 Aligned_cols=157 Identities=18% Similarity=0.212 Sum_probs=97.5
Q ss_pred CceEEEEEecceeEEEEEEeeCCe-EEEEcC----CCccCCCCchhHHHHHHhhcCCCCCCeEEEEEEEEEecCCCCccc
Q 001045 978 NKAFTCEYKYDGQRAQIHKLVDGT-VRIFSR----NGDETTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIM 1052 (1176)
Q Consensus 978 ~~~f~~E~KyDGeR~QiH~~~~g~-V~ifSR----~g~d~T~~ypdl~~~l~~~~~~~~~~~ILDGElVa~d~~~g~~~~ 1052 (1176)
.-.|+||+|+||.-+-+.+. +|. |+..|| .|+|+|....-|. .|+..+. .+..+.+=||++.- ..
T Consensus 104 ~~~~~~EpKiDGlaisL~Ye-~G~Lv~a~TRGDG~~GEDVT~nvrtI~-~IP~~L~-~~~~levRGEv~m~-------~~ 173 (318)
T 3jsl_A 104 NVEYMCELKIDGLAVSLKYV-DGYFVQGLTRGDGTTGEDITENLKTIH-AIPLKMK-EPLNVEVRGEAYMP-------RR 173 (318)
T ss_dssp SCCEEEEEEECSEEEEEEEE-TTEEEEEEECTTSSEEEBCHHHHTTCT-TSCSBCS-SCCCEEEEEEEECC-------HH
T ss_pred CceEEEEEeecceEEEEEEE-CCEEEEEEeCCCCccchhHHHHHHHhc-CCccccC-CCCcEEEEEEEEEc-------HH
Confidence 34799999999999999994 665 799999 5788886532221 1221111 13468999999972 23
Q ss_pred ChHHHhhhhcC-CC-----Cch-----hhh----cccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhcccCCCcE
Q 001045 1053 SFQELSSRERG-GK-----DSV-----ITI----KSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYF 1117 (1176)
Q Consensus 1053 pFq~L~~R~r~-~~-----~~~-----i~~----~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~~~~~i 1117 (1176)
.|..|-.+... +. ..+ ... .....++.||+|++....|... ....++.+.|+++- -+.....
T Consensus 174 ~F~~lN~~~~~~g~~~faNPRNaAAGsLRqld~~ita~R~L~ff~y~~~~~~~~~~--~t~~e~l~~L~~~G-F~v~~~~ 250 (318)
T 3jsl_A 174 SFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNA--RSQSEALDELDKLG-FTTNKNR 250 (318)
T ss_dssp HHHHHHHHHBTTBCCCCSSHHHHHHHHHSCSCHHHHHHSCCEEEEEEESCCTTCCC--SBHHHHHHHHHHHT-CCCCTTC
T ss_pred HHHHHHHHHHHhCCccccChHHHHHHHHHccChhhhhhCcceEEEEecccccCCCC--CCHHHHHHHHHHCC-CCcCCcc
Confidence 56665432110 00 000 000 0124579999999987665332 57889999999874 2222222
Q ss_pred EEeEEEEEcCCCCCCccccCHHHHHHHHHHHHh------CCCceEEEecCC
Q 001045 1118 QYAKEMTVEGDDNCLTSDVSLSKINNFLEEALH------SSCEGIIVKSLD 1162 (1176)
Q Consensus 1118 ~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~------~g~EGlmvK~ld 1162 (1176)
.+ ..+.+++.++++...+ ----|||+|--+
T Consensus 251 ~~---------------~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn~ 286 (318)
T 3jsl_A 251 AR---------------VNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVND 286 (318)
T ss_dssp EE---------------ESSHHHHHHHHHHHHHHGGGSSSCEEEEEEEESB
T ss_pred eE---------------eCCHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeC
Confidence 11 2467899998887643 345799999644
No 95
>4e6n_A Metallophosphoesterase; RNA repair, RNA ligase, ligase-activating, protein binding; HET: AMP; 2.39A {Clostridium thermocellum} PDB: 4drf_A* 3ty9_A* 3ty8_A* 3ty5_A*
Probab=97.07 E-value=0.0076 Score=67.82 Aligned_cols=186 Identities=19% Similarity=0.190 Sum_probs=118.1
Q ss_pred hhHHHHhc---cCceEEEEEecceeEEEEEEee------------CC-eEEEEcCCCccCCCCchhH----HHHHHhhc-
Q 001045 969 VPQVLKLF---QNKAFTCEYKYDGQRAQIHKLV------------DG-TVRIFSRNGDETTSRFPDL----ISIINEFC- 1027 (1176)
Q Consensus 969 ~~~~~~~~---~~~~f~~E~KyDGeR~QiH~~~------------~g-~V~ifSR~g~d~T~~ypdl----~~~l~~~~- 1027 (1176)
+.+++.-+ +-....||+|+=|-|+.+.+-. +| .=.+|+|+|+.+-+. +++ ...++..+
T Consensus 68 P~eAF~yyr~~GV~~VVCEeKHMGSRAVv~vcRd~~~A~~rFGv~~g~~G~~yTRTGR~FF~d-~~l~~~ll~rlr~a~~ 146 (427)
T 4e6n_A 68 PIEAFEYFRTRGVGKVVCEQKHMGSRAVVIVCKDSQVAEKRFGVLDGTAGICYTRTGRHFFDD-MQLEAELIDRVRKVLD 146 (427)
T ss_dssp HHHHHHHHHTTTCCEEEEEECCCSEEEEEEEESSHHHHHHHHCCCSSCSEEEECTTSCBSCSC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCceEEeccccCCcceEEEEEcCHHHHHHhcCCCCCCcceeEecCCccccCC-chhHHHHHHHHHHHHH
Confidence 34555443 3357899999999999777521 22 468999999998533 333 23232211
Q ss_pred -----C-CCCCCeEEEEEEEEEecCCCC-------------------------------------------cccChHHHh
Q 001045 1028 -----K-PAAGTFILDAEVVAIDRKNGC-------------------------------------------KIMSFQELS 1058 (1176)
Q Consensus 1028 -----~-~~~~~~ILDGElVa~d~~~g~-------------------------------------------~~~pFq~L~ 1058 (1176)
. ...+=+.||||++.|+-+-++ +-++-..|.
T Consensus 147 ~aglw~~l~tdWl~LD~ELmPWSaKA~~Lir~QYA~VgaA~~a~l~~a~~~L~~A~~~~~~~~~~~~~~~~rg~dv~~Ll 226 (427)
T 4e6n_A 147 KSGFWGDFNTDWVCLDCELMPWSAKAQKLLEEQYSAVGISGRVVLDEAVKLLKQASLNKTVSFDVSRQTSGKNADINELL 226 (427)
T ss_dssp HHTHHHHTTCSEEEEEEEEECTHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTC-----------CEECCHHHHH
T ss_pred hcchHHHhCCcEEEeecccCCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccccccccccccCCCHHHHH
Confidence 1 234447899999999743110 001222222
Q ss_pred hhhcCCCCchh-----------hhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhcccCCCcEEEeEEEEEcC
Q 001045 1059 SRERGGKDSVI-----------TIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEG 1127 (1176)
Q Consensus 1059 ~R~r~~~~~~i-----------~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~~~~~i~~~~~~~v~~ 1127 (1176)
.|.+.... +. ..-+.--.+.+--|-||-..|....+.|-.--.+.+..+. ...++.+.-.++..|+.
T Consensus 227 ~r~~~r~~-~~~~y~~AYr~YcWpv~gl~~~rlAPF~iLA~eg~~~~~~~H~WHm~~~~rl~-~~d~~l~~~T~~~~VDl 304 (427)
T 4e6n_A 227 QRFTERSE-MMQKYVEAYRKYCWPVNSIDDLKLAPFHILATEGKVHSDKNHIWHMDTIAKYC-TQDDSLIMATNHILVDV 304 (427)
T ss_dssp HHHHHHHH-HHHHHHHHHHTTCCCCSSGGGCEEEEEEEEEETTEECTTSCHHHHHHHHHHHH-STTCTTBCCCCEEEEET
T ss_pred HHHHHHHH-HHHHHHHHHHHhCCCCCCcCceeecchhhhhcccccccCCChHHHHHHHHHHH-hcCccceeccccEEeeC
Confidence 22110000 00 0000111488999999999999999999998888889888 45556666666666653
Q ss_pred CCCCCccccCHHHHHHHHHHHHhCCCceEEEecCC
Q 001045 1128 DDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLD 1162 (1176)
Q Consensus 1128 ~~~~~~~~~~~eei~~~~~~ai~~g~EGlmvK~ld 1162 (1176)
.+ ..+.++...++.+....|.||+|||..+
T Consensus 305 ~d-----~~s~~~a~~WW~~lT~~GgEGMVVKP~~ 334 (427)
T 4e6n_A 305 TD-----AESVDKGIKWWEDLTASGGEGMVVKPYD 334 (427)
T ss_dssp TC-----HHHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred CC-----HHHHHHHHHHHHHHhcCCCceeEecchh
Confidence 22 3566788899999999999999999876
No 96
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=96.78 E-value=0.0028 Score=76.98 Aligned_cols=155 Identities=20% Similarity=0.254 Sum_probs=96.9
Q ss_pred ceEEEEEecceeEEEEEEeeCCe-EEEEcC----CCccCCCCchhHHHHHHhhcC--CCCCCeEEEEEEEEEecCCCCcc
Q 001045 979 KAFTCEYKYDGQRAQIHKLVDGT-VRIFSR----NGDETTSRFPDLISIINEFCK--PAAGTFILDAEVVAIDRKNGCKI 1051 (1176)
Q Consensus 979 ~~f~~E~KyDGeR~QiH~~~~g~-V~ifSR----~g~d~T~~ypdl~~~l~~~~~--~~~~~~ILDGElVa~d~~~g~~~ 1051 (1176)
-.|+||+|+||.-+-+.+ .+|. ++..|| .|+|+|....-|.. ++..+. ..+..+.+=||++.- .
T Consensus 108 ~~~~~epKiDGlavsL~Y-e~G~Lv~a~TRGDG~~GeDiT~nvrtI~~-IPl~l~~~~~p~~leVRGEv~m~-------~ 178 (586)
T 4glx_A 108 VTWCCELKLDGLAVSILY-ENGVLVSAATRGDGTTGEDITSNVRTIRA-IPLKLHGENIPARLEVRGEVFLP-------Q 178 (586)
T ss_dssp -CEEEEEEESSEEEEEEE-ETTEEEEEEECTTSSEEEBCHHHHTTCTT-SCSBCCSSSCCSEEEEEEEEECC-------H
T ss_pred ceEEEEEeecceEEEEEE-eCCEEEEEEccCCCcccccHHHHHHhccC-cccccccCCCCceEEEEEEEEEE-------h
Confidence 468999999999999999 4776 899999 57888854322211 111111 124568889999972 2
Q ss_pred cChHHHhhhh-c-C----------------CCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhcccC
Q 001045 1052 MSFQELSSRE-R-G----------------GKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEK 1113 (1176)
Q Consensus 1052 ~pFq~L~~R~-r-~----------------~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~~ 1113 (1176)
..|..+-.+. . . ..+..+ ....++.|++|++....|..+. ....++.+.|+++- -+.
T Consensus 179 ~~F~~ln~~~~~~g~~~faNpRNaaAGslrqld~~~---~a~r~L~f~~y~v~~~~~~~~~-~t~~e~l~~L~~~G-f~v 253 (586)
T 4glx_A 179 AGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRI---TAKRPLTFFCYGVGVLEGGELP-DTHLGRLLQFKKWG-LPV 253 (586)
T ss_dssp HHHHHHHHHHHHTTCCCCSCHHHHHHHHHTCSCHHH---HHTSCCEEEEEEEEEEESSCCC-SBHHHHHHHHHHTT-CCC
T ss_pred hhccccchhhhhccCccchhhHHHHhccccccchhh---hhccccceeEeeeeeeeccccc-ccHHHHHHHHHHcC-CCC
Confidence 3566654321 0 0 011111 1245799999999888875542 46788999998874 222
Q ss_pred CCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhC------CCceEEEecCC
Q 001045 1114 MGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHS------SCEGIIVKSLD 1162 (1176)
Q Consensus 1114 ~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~------g~EGlmvK~ld 1162 (1176)
.....+ ..+.+++.+++++..+. ---|||+|--+
T Consensus 254 ~~~~~~---------------~~~~~~~~~~~~~~~~~R~~l~y~iDGiVikvn~ 293 (586)
T 4glx_A 254 SDRVTL---------------CESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNS 293 (586)
T ss_dssp CTTCEE---------------ESSHHHHHHHHHHHHHHGGGSSSCEEEEEEEESB
T ss_pred ccceee---------------eccHHHHHHHHHHHHHhhhcccccCCceEEEecc
Confidence 222221 24678888888766543 44799999643
No 97
>1xk5_A Snurportin-1; protein-RNA-complex, transport protein; HET: TPG; 2.40A {Homo sapiens}
Probab=96.74 E-value=0.0032 Score=66.21 Aligned_cols=157 Identities=20% Similarity=0.260 Sum_probs=109.6
Q ss_pred cCCCCcccCChhHHHHhccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCCCCchhHHHHHHhh--cC-CCCCCeE
Q 001045 959 KPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEF--CK-PAAGTFI 1035 (1176)
Q Consensus 959 ~PMLA~~~~~~~~~~~~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~~ypdl~~~l~~~--~~-~~~~~~I 1035 (1176)
+.||++=..++++-+ +.+|++-+-==|.||.|+. .+|....++|+|..+. +|+.. ++.- .. ....-+|
T Consensus 5 ~lmlsEWl~diP~dl----~~~Wl~vp~P~GkRcLvva-~~G~T~~~~k~G~~~~-~F~S~---LPgG~~~~~~~~~~tI 75 (204)
T 1xk5_A 5 QLMLSEWLIDVPSDL----GQEWIVVVCPVGKRALIVA-SRGSTSAYTKSGYCVN-RFSSL---LPGGNRRNSTAKDYTI 75 (204)
T ss_dssp CSEEEEECCSCCTTH----HHHEEEEEEESSEEEEEEE-ETTEEEEECTTSCEEE-EECCS---SSSSCSSSCCTTCCEE
T ss_pred chhhhhhcccCCCcc----CCCeEEEECCCCcEEEEEe-cCCeEEEECCCCcEEE-EEccc---CCCCCcccCCCCCCEE
Confidence 356665544444432 2478888888899999999 6899999999998652 23211 1100 00 0234699
Q ss_pred EEEEEEEEecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhcccC--
Q 001045 1036 LDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEK-- 1113 (1176)
Q Consensus 1036 LDGElVa~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~~-- 1113 (1176)
|||=. ++.+ -+|+|.|+|.+||.++.+-..+-|.--|++-+. +.
T Consensus 76 LDCI~---~e~~------------------------------~tyYVLDvl~W~g~~l~dcetefRffWl~skl~-E~~~ 121 (204)
T 1xk5_A 76 LDCIY---NEVN------------------------------QTYYVLDVMCWRGHPFYDCQTDFRFYWMHSKLP-EEEG 121 (204)
T ss_dssp EEEEE---EGGG------------------------------TEEEEEEEEEETTEECTTSCHHHHHHHHHHHTT-TSTT
T ss_pred EEEEE---ecCC------------------------------cEEEEEEEEEECCceeecCcHHHHHHHHHHHhc-cccc
Confidence 99853 3211 259999999999999999999999999999883 32
Q ss_pred --------CCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhCCCceEEEecCCCCCCcccCC
Q 001045 1114 --------MGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSK 1171 (1176)
Q Consensus 1114 --------~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~g~EGlmvK~ld~~s~Y~pGk 1171 (1176)
+-+|..++...+ +.+.+.+++.....--..|+..=..+ +.|++|.
T Consensus 122 l~~~s~~n~~~f~~lp~~~c-----------~~~~l~~~~~~~~~~~~DGlLFyHK~--a~Y~~G~ 174 (204)
T 1xk5_A 122 LGEKTKLNPFKFVGLKNFPC-----------TPESLCDVLSMDFPFEVDGLLFYHKQ--THYSPGS 174 (204)
T ss_dssp TTSCBTTBSSEEEECCEEEC-----------SHHHHHHHHTCCCSSCEEEEEEEESS--CCCCSEE
T ss_pred cccccccCCcceEecccccC-----------CHHHHHHHHccCCCCCcceEEEEecc--ccccCCC
Confidence 124677777765 35677777765556678899988776 8999983
No 98
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=96.20 E-value=0.0068 Score=74.72 Aligned_cols=153 Identities=20% Similarity=0.247 Sum_probs=97.5
Q ss_pred eEEEEEecceeEEEEEEeeCCe-EEEEcC----CCccCCCCchhHHHHHHhhcCC--CCCCeEEEEEEEEEecCCCCccc
Q 001045 980 AFTCEYKYDGQRAQIHKLVDGT-VRIFSR----NGDETTSRFPDLISIINEFCKP--AAGTFILDAEVVAIDRKNGCKIM 1052 (1176)
Q Consensus 980 ~f~~E~KyDGeR~QiH~~~~g~-V~ifSR----~g~d~T~~ypdl~~~l~~~~~~--~~~~~ILDGElVa~d~~~g~~~~ 1052 (1176)
.|+||+|+||.-+-+.+. +|. |+..|| .|+|+|....-|.. |+..+.. .+..+.+=||++.- ..
T Consensus 109 ~~~~e~KiDGlaisL~Ye-~G~Lv~a~TRGDG~~GEdvT~n~rtI~~-IP~~l~~~~~p~~levRGEv~m~-------~~ 179 (671)
T 2owo_A 109 TWCCELKLDGLAVSILYE-NGVLVSAATRGDGTTGEDITSNVRTIRA-IPLKLHGENIPARLEVRGEVFLP-------QA 179 (671)
T ss_dssp CEEEEEEESSEEEEEEEE-TTEEEEEECCTTSSEEEBCHHHHHTCTT-SCSBCCSSSCCSEEEEEEEEECC-------HH
T ss_pred eEEEEEecceEEEEEEEe-CCEEEEEEecCCCcchhhHHHHHhhhcC-CCccccCCCCCCeEEEEEEEEEE-------HH
Confidence 699999999999999995 665 789999 67888754322211 2222221 14458899999972 34
Q ss_pred ChHHHhhh-hcCC-----------------CCchhhhcccccceEEEEEEeeeeCC-cccccCCHHHHHHHHHHhhcccC
Q 001045 1053 SFQELSSR-ERGG-----------------KDSVITIKSVKVDICVFVFDIMFANG-EQLLGYTLRQRRKYLKDLFYDEK 1113 (1176)
Q Consensus 1053 pFq~L~~R-~r~~-----------------~~~~i~~~~~~~~v~~~vFDiL~lnG-~~Ll~~Pl~eRr~lL~~~~~~~~ 1113 (1176)
.|..|-.+ ...+ .++.+ ....++.||+|++...+| .. -....++.+.|+++- -+.
T Consensus 180 ~F~~lN~~~~~~g~~~faNpRNaaAGsLrqld~~~---~a~R~L~~~~y~~~~~~~~~~--~~t~~e~l~~L~~~G-f~v 253 (671)
T 2owo_A 180 GFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRI---TAKRPLTFFCYGVGVLEGGEL--PDTHLGRLLQFKKWG-LPV 253 (671)
T ss_dssp HHHHHHHHHHHSSCCCCSCHHHHHHHHHTCSCHHH---HHTSCCEEEEEEEEEEESSCC--CSBHHHHHHHHHHHT-CCC
T ss_pred HHHHHHHHHHhcCCCcccChHHHHHHHHHhcChhh---HhcCCCEEEEEECcccCCCCC--CCCHHHHHHHHHHCC-CCC
Confidence 56666432 1111 11111 124579999999965554 32 257889999999985 232
Q ss_pred CCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHh------CCCceEEEecCC
Q 001045 1114 MGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALH------SSCEGIIVKSLD 1162 (1176)
Q Consensus 1114 ~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~------~g~EGlmvK~ld 1162 (1176)
.....+ ..+.+++.+++++..+ -.-.|||+|--+
T Consensus 254 ~~~~~~---------------~~~~~~v~~~~~~~~~~R~~l~y~iDGvViKv~~ 293 (671)
T 2owo_A 254 SDRVTL---------------CESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNS 293 (671)
T ss_dssp CTTCEE---------------ESSHHHHHHHHHHHHHHGGGSSSCEEEEEEEESB
T ss_pred CCccee---------------eCCHHHHHHHHHHHHHHHhcCCCCCccEEEEecC
Confidence 222221 2468899999888744 345899999643
No 99
>3gjx_B Snurportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Homo sapiens} PDB: 3nby_B* 3nbz_B* 3nc0_B* 3gb8_B 2qna_B
Probab=96.18 E-value=0.011 Score=66.51 Aligned_cols=159 Identities=20% Similarity=0.259 Sum_probs=108.8
Q ss_pred cCCCCcccCChhHHHHhccCceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCCCCchhHHHHH--HhhcCCCCCCeEE
Q 001045 959 KPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISII--NEFCKPAAGTFIL 1036 (1176)
Q Consensus 959 ~PMLA~~~~~~~~~~~~~~~~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~~ypdl~~~l--~~~~~~~~~~~IL 1036 (1176)
+.||+.-.-++++-+ +.+|++-+-==|.||.|+. ..|....|+|+|.-+ .+|+...+-- +.. ....-+||
T Consensus 106 qlMlsEWl~dvP~dL----~~~W~~vpcPvGkRcLVVa-s~G~T~aysk~G~~l-~~F~S~LPGG~~~~s--~~~~~TIL 177 (365)
T 3gjx_B 106 QLMLSEWLIDVPSDL----GQEWIVVVCPVGKRALIVA-SRGSTSAYTKSGYCV-NRFSSLLPGGNRRNS--TAKDYTIL 177 (365)
T ss_dssp CSEEEEECCSCCTTH----HHHEEEEEEESSEEEEEEE-ETTEEEEECTTCCEE-EEECCSSTTTCC------CCCCEEE
T ss_pred hHHHHHhcccCCccc----ccCeeEEeccCCcEEEEEe-cCceEEEECCCCCEE-eeeCCCCCCCCcccc--CCCCCEEE
Confidence 467776554554432 2478888888899999999 699999999999664 2333211000 000 02457999
Q ss_pred EEEEEEEecCCCCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhccc----
Q 001045 1037 DAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDE---- 1112 (1176)
Q Consensus 1037 DGElVa~d~~~g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~~---- 1112 (1176)
||= |++.+ -+|+|.|||.+||.++.+.+..-|.-.|++-+.+.
T Consensus 178 DCI---y~e~~------------------------------~tyYVLDVL~W~g~~l~dCeteFRffWl~SKL~E~~~l~ 224 (365)
T 3gjx_B 178 DCI---YNEVN------------------------------QTYYVLDVMCWRGHPFYDCQTDFRFYWMHSKLPEEEGLG 224 (365)
T ss_dssp EEE---EETTT------------------------------TEEEEEEEEEETTEECTTSCHHHHHHHHHHHGGGSTTTT
T ss_pred EEE---eecCC------------------------------ceEEEEEEeeeCCcccccCchHHHHHHHHHHhhhccccc
Confidence 985 43221 26999999999999999999999999999988421
Q ss_pred -----CCCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhCCCceEEEecCCCCCCcccCC
Q 001045 1113 -----KMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSK 1171 (1176)
Q Consensus 1113 -----~~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~g~EGlmvK~ld~~s~Y~pGk 1171 (1176)
.+-+|...+...+ +.+.+...+..-..--..||.+=.-. +.|.||.
T Consensus 225 e~s~~np~~Fv~lp~~~C-----------~~esL~~~ls~~~pfe~DGLLFYHK~--ahY~~G~ 275 (365)
T 3gjx_B 225 EKTKLNPFKFVGLKNFPC-----------TPESLCDVLSMDFPFEVDGLLFYHKQ--THYSPGS 275 (365)
T ss_dssp SCCSSCCSEEEECCEEEC-----------CHHHHHHHTTCCCSSCEEEEEEEETT--CCCCSEE
T ss_pred ccccCCCCceeccCCCCc-----------CHHHHHHHhccCCCCccceEEEEecc--ccccCCC
Confidence 1224666677665 35666666655555567899988766 8999983
No 100
>3h3e_A Uncharacterized protein TM1679; structural genomics, surface entropy reduction, ISFI, beta- lactamase superfamily, PSI-2; 2.75A {Thermotoga maritima}
Probab=96.13 E-value=0.0061 Score=67.38 Aligned_cols=53 Identities=21% Similarity=0.050 Sum_probs=39.2
Q ss_pred CCCeeE-eCCccEEEecCCcCC---------CCc-cEEEeccCChhhhCCcccCCCCceEEeCHHHH
Q 001045 38 FPPSKH-VPNTRFLIDAFRYAA---------DFS-VSYFLSHFHSDHYTGLSPSWSKGIIFCSEITS 93 (1176)
Q Consensus 38 ~p~~~~-ipg~~~liD~~~~~~---------~~i-~avfITHaH~DHiggL~~l~~~~pIY~s~~T~ 93 (1176)
..|..+ +.. ++||++.... -++ ++|+|||.|.||+||++.+ .+.+||+++...
T Consensus 30 ~~G~s~lie~--iLiD~G~~~~l~~~l~~~gi~~~~~IvlTH~H~DH~ggl~~l-~~~~v~~~~~~~ 93 (267)
T 3h3e_A 30 EHGFSVLVDS--VLFDTGKSDVFLKNARKLGIDLPKDVLISHGHYDHAGGLLYL-SGKRVWLRKEAL 93 (267)
T ss_dssp CSSCEEEETT--EEECCCSSSHHHHHHHHTTCCCCSEEECSCSCHHHHGGGGGC-CSCEEEEEGGGG
T ss_pred CcEeHHeeee--EEEECCCcHHHHHHHHHCCcCcCCEEEECCCChhhhCCHHHh-cCCEEEECHHHH
Confidence 334444 444 9999984311 112 8999999999999999988 788999988763
No 101
>1xdn_A RNA editing ligase MP52; HET: MSE ATP; 1.20A {Trypanosoma brucei} SCOP: d.142.2.4
Probab=96.05 E-value=0.014 Score=63.68 Aligned_cols=125 Identities=16% Similarity=0.237 Sum_probs=73.2
Q ss_pred cCceEEEEEecceeEEEEEEe-eCCe--EEEEcCCCccC-CCCc-------hhHHHHHHhhc---C-----CCCCCeEEE
Q 001045 977 QNKAFTCEYKYDGQRAQIHKL-VDGT--VRIFSRNGDET-TSRF-------PDLISIINEFC---K-----PAAGTFILD 1037 (1176)
Q Consensus 977 ~~~~f~~E~KyDGeR~QiH~~-~~g~--V~ifSR~g~d~-T~~y-------pdl~~~l~~~~---~-----~~~~~~ILD 1037 (1176)
.+..|.+.+|.||-..-+.+. +++. |++.||++.-- ++.| +++...+++++ . .....+++=
T Consensus 31 ~~~ewvatEKIHGaNFsii~~~d~~~~~i~~akRs~~l~~~e~FfGy~~i~~~l~~~~~~l~~~l~~~~~~~~~~~v~Vy 110 (277)
T 1xdn_A 31 AAQEWVACEKVHGTNFGIYLINQGDHEVVRFAKRSGIMDPNENFFGYHILIDEFTAQIRILNDLLKQKYGLSRVGRLVLN 110 (277)
T ss_dssp GGSCEEEEEECCSEEEEEEEEEETTEEEEEEEETTEECCTTCCCTTGGGGHHHHHHHHHHHHHHHHHHHTCSCCSEEEEE
T ss_pred CCCcEEEEEeeccccEEEEEecCCCeeEEEEeecccccCcccccccHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEE
Confidence 456899999999999998873 2556 99999998432 2222 34433332221 1 336889999
Q ss_pred EEEEEEecCCC-------------CcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeCC---cccccCCHHHH
Q 001045 1038 AEVVAIDRKNG-------------CKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANG---EQLLGYTLRQR 1101 (1176)
Q Consensus 1038 GElVa~d~~~g-------------~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~lnG---~~Ll~~Pl~eR 1101 (1176)
||+.+|.-.+. .+..|+... ...+ .+- .....++.|+||||.+.++ +...-++|.+=
T Consensus 111 GELfGg~y~hp~v~~~~~~~~~~~~~~~p~~~~--~IQ~----~i~-~~Y~p~~~FYaFDI~~~~~~~~~~~~~L~fd~~ 183 (277)
T 1xdn_A 111 GELFGAKYKHPLVPKSEKWCTLPNGKKFPIAGV--QIQR----EPF-PQYSPELHFFAFDIKYSVSGAEEDFVLLGYDEF 183 (277)
T ss_dssp EEEEEEECCCTTSCCCCCEEECTTSCEEEGGGC--CSCC----CSS-CCCEEEEEEEEEEEEEESSCCGGGEEECCHHHH
T ss_pred EEEecCccCCccccccccccccCccccCccccc--cccc----ccc-cccCCCceEEEEEEEEecCCCccccccCCHHHH
Confidence 99999862110 000010000 0000 000 0011268999999998763 33456888877
Q ss_pred HHHHHHh
Q 001045 1102 RKYLKDL 1108 (1176)
Q Consensus 1102 r~lL~~~ 1108 (1176)
.+.+.+.
T Consensus 184 ~~~~~~~ 190 (277)
T 1xdn_A 184 VEFSSKV 190 (277)
T ss_dssp HHHHHTS
T ss_pred HHHHHHh
Confidence 7777654
No 102
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=95.89 E-value=0.018 Score=70.95 Aligned_cols=172 Identities=18% Similarity=0.210 Sum_probs=105.6
Q ss_pred cCCCCc-ccCChhHH---HHhccC-----ceEEEEEecceeEEEEEEeeCCeEEEEcC----CCccCCCCchhHHHHHHh
Q 001045 959 KPMLAK-ITNGVPQV---LKLFQN-----KAFTCEYKYDGQRAQIHKLVDGTVRIFSR----NGDETTSRFPDLISIINE 1025 (1176)
Q Consensus 959 ~PMLA~-~~~~~~~~---~~~~~~-----~~f~~E~KyDGeR~QiH~~~~g~V~ifSR----~g~d~T~~ypdl~~~l~~ 1025 (1176)
.|||.- .+.+.+++ .+++.. -.|+||+|+||.-+ +.+ .+|. +..|| .|+|+|....-|.. |+.
T Consensus 80 ~pMlSL~n~~~~~el~~f~~rv~~~~~~~~~~~~e~KiDGlai-L~Y-e~G~-~a~TRGDG~~GedvT~n~rtI~~-iP~ 155 (667)
T 1dgs_A 80 TRMYSLDNAFTYEEVLAFEERLEREAEAPSLYTVEHKVDGLSV-LYY-EEGV-WSTGSGDGEVGEEVTQNLLTIPT-IPR 155 (667)
T ss_dssp SCCCCCCEECSHHHHHHHHHHTTSSSCSCCEEEEEECCSCEEE-EEE-ETTE-EEEEECSSSEEEBCTGGGTSSTT-SCS
T ss_pred CcCcCccccCCHHHHHHHHHHHHHhcCCCceEEEEEccceeEE-EEE-cCCC-EEEeeCCCcchhhHHHHHhhhcC-CCc
Confidence 489864 23344443 334321 25999999999999 999 5888 99999 78999976543322 222
Q ss_pred hcCCCCCCeEEEEEEEEEecCCCCcccChHHHhhh-h-cC----------------CCCchhhhcccccce--EEEEEEe
Q 001045 1026 FCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSR-E-RG----------------GKDSVITIKSVKVDI--CVFVFDI 1085 (1176)
Q Consensus 1026 ~~~~~~~~~ILDGElVa~d~~~g~~~~pFq~L~~R-~-r~----------------~~~~~i~~~~~~~~v--~~~vFDi 1085 (1176)
.+...+..+.+=||++.- ...|..|-.+ . .+ ..+..+. ...++ .||+|++
T Consensus 156 ~l~~~p~~levRGEv~m~-------~~~F~~lN~~~~~~g~~~faNpRNaaAGsLrqld~~~~---a~r~L~~~~~~y~~ 225 (667)
T 1dgs_A 156 RLKGVPDRLEVRGEVYMP-------IEAFLRLNEELEERGEKVFKNPRNAAAGSLRQKDPRVT---AKRGLRATFYALGL 225 (667)
T ss_dssp BCSSCCSEEEEEEEEECC-------HHHHHHHHHHHHHHTCCCCSSHHHHHHHHHSCSSHHHH---HHSCCEEECCCBCT
T ss_pred ccCCCCCeEEEEEEEEEE-------HHHHHHHHHHHHhcCCCcccChHHHHHHHHHhcChhhh---hhCCCCCEEEEEEe
Confidence 222124558899999972 3457666432 1 11 0111111 23457 9999998
Q ss_pred ee-eCCcccccCCHHHHHHHHHHhhcccCCCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHHhC------CCceEEE
Q 001045 1086 MF-ANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEALHS------SCEGIIV 1158 (1176)
Q Consensus 1086 L~-lnG~~Ll~~Pl~eRr~lL~~~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai~~------g~EGlmv 1158 (1176)
++ .++.. -.+..++.+.|+++- -+......+ ..+.+++.+++++..+. .-.|||+
T Consensus 226 ~~~~~~~~--~~t~~e~l~~L~~~G-f~v~~~~~~---------------~~~~~~v~~~~~~~~~~R~~l~y~iDGvVi 287 (667)
T 1dgs_A 226 GLGLEESG--LKSQYELLLWLKEKG-FPVEHCYEK---------------ALGAEGVEEVYRRGLAQRHALPFEADGVVL 287 (667)
T ss_dssp TTTTTSCC--CCBHHHHHHHHHHTT-CCCCSCEEE---------------EEHHHHHHHHHHHHHHTTTTSSSCCCEEEE
T ss_pred eccCCCCC--CCCHHHHHHHHHHCC-CCCCccceE---------------eCCHHHHHHHHHHHHHHHhcCCCCCCcEEE
Confidence 41 13222 257889999999875 233332222 23578999999887643 4589999
Q ss_pred ecCC
Q 001045 1159 KSLD 1162 (1176)
Q Consensus 1159 K~ld 1162 (1176)
|--+
T Consensus 288 Kv~~ 291 (667)
T 1dgs_A 288 KLDD 291 (667)
T ss_dssp EESB
T ss_pred EecC
Confidence 9644
No 103
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=95.76 E-value=0.0029 Score=76.95 Aligned_cols=153 Identities=20% Similarity=0.238 Sum_probs=94.9
Q ss_pred eEEEEEecceeEEEEEEeeCCe-EEEEcC----CCccCCCCchhHHHHHHhhcCC-----CCCCeEEEEEEEEEecCCCC
Q 001045 980 AFTCEYKYDGQRAQIHKLVDGT-VRIFSR----NGDETTSRFPDLISIINEFCKP-----AAGTFILDAEVVAIDRKNGC 1049 (1176)
Q Consensus 980 ~f~~E~KyDGeR~QiH~~~~g~-V~ifSR----~g~d~T~~ypdl~~~l~~~~~~-----~~~~~ILDGElVa~d~~~g~ 1049 (1176)
.|+||+|+||.=+-+.+ .+|. |+..|| .|+|+|....-|. .|+..+.. .+..+.+=||++.-
T Consensus 117 ~~~~EpKiDGlavsL~Y-e~G~Lv~a~TRGDG~~GEDVT~nvrtI~-~IP~~L~~~~~~~~p~~levRGEv~m~------ 188 (615)
T 3sgi_A 117 HYLCELKIDGVALSLVY-REGRLTRASTRGDGRTGEDVTLNARTIA-DVPERLTPGDDYPVPEVLEVRGEVFFR------ 188 (615)
T ss_dssp CEEEEEEECSEEEEEEE-ETTEEEEEECCTTSSSCBCCHHHHHSCS-SSCSSCCCCSSCCCCSEEEEEEEEECC------
T ss_pred eEEEEEEecceEEEEEE-ECCEEEEEEecCCCcchhhHHHHHHhhc-CcchhhcCCcccCCCCeEEEEEEEEEe------
Confidence 69999999999999999 4776 799999 6788875432111 11211111 14468899999972
Q ss_pred cccChHHHhhhhc-CC-----------------CCchhhhcccccceEEEEEEeeeeCCcccccCCHHHHHHHHHHhhcc
Q 001045 1050 KIMSFQELSSRER-GG-----------------KDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYD 1111 (1176)
Q Consensus 1050 ~~~pFq~L~~R~r-~~-----------------~~~~i~~~~~~~~v~~~vFDiL~lnG~~Ll~~Pl~eRr~lL~~~~~~ 1111 (1176)
...|..|-.+.. .+ .+..+ ..+.++.||+|++...+|.. -....++.+.|+++- -
T Consensus 189 -~~~F~~lN~~~~~~g~~~faNpRNaAAGsLRqld~~i---ta~R~L~~f~y~~~~~~~~~--~~t~~e~l~~L~~~G-f 261 (615)
T 3sgi_A 189 -LDDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAV---TARRRLRMICHGLGHVEGFR--PATLHQAYLALRAWG-L 261 (615)
T ss_dssp -HHHHHHHHTTCSSSSSCCCSSHHHHHHHHHTCSSTTH---HHHSCCEEEEEEEEEEESCC--CSBTTTHHHHHHHTT-C
T ss_pred -HHHHHHHHHHHHHcCCCcCCChHHHHHHHHHcCChhh---HhhCcceEEEEeccccCCCC--CcCHHHHHHHHHHCC-C
Confidence 235665543211 00 01111 12357999999998776532 235678888998873 1
Q ss_pred cCCCcEEEeEEEEEcCCCCCCccccCHHHHHHHHHHHH------hCCCceEEEecCC
Q 001045 1112 EKMGYFQYAKEMTVEGDDNCLTSDVSLSKINNFLEEAL------HSSCEGIIVKSLD 1162 (1176)
Q Consensus 1112 ~~~~~i~~~~~~~v~~~~~~~~~~~~~eei~~~~~~ai------~~g~EGlmvK~ld 1162 (1176)
+.... .. ...+.+++.++++... .----|||+|--+
T Consensus 262 ~v~~~------~~---------~~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn~ 303 (615)
T 3sgi_A 262 PVSEH------TT---------LATDLAGVRERIDYWGEHRHEVDHEIDGVVVKVDE 303 (615)
T ss_dssp CCCCC------CC---------CBSSHHHHHHHHTTTTTSGGGSSSCEEEEEEEESB
T ss_pred CCCCC------eE---------eeCCHHHHHHHHHHHHHHhhcCCCCCCeEEEEecC
Confidence 11111 11 1357899999987663 3445799999744
No 104
>2hiv_A Thermostable DNA ligase; ATP-dependent, open conformation; 2.05A {Sulfolobus solfataricus} PDB: 2hix_A*
Probab=95.18 E-value=0.045 Score=67.48 Aligned_cols=94 Identities=14% Similarity=0.202 Sum_probs=76.8
Q ss_pred CCCcHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHhhcchhhHHHHHHHHhhcc--------ccCcchhhHHHHHHHhhc
Q 001045 823 PPLLIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNL--------RIGAMMRTILPALAQAVV 894 (1176)
Q Consensus 823 ~~LTi~eV~~~L~~IA~~~g~~s~~~K~~il~~Ll~~~~~~E~k~LvRiIlk~L--------RiG~~~~tvl~aLa~A~~ 894 (1176)
.++...++-+.+++|+..+ +...|.++|.++|+.+++.+.-|.+++|++.| +.|++++++.++++++++
T Consensus 19 ~~~~f~~~~~~~~~l~~t~---~r~~k~~~l~~~~~~~~~~d~~~~~~ll~~~l~P~~~~~~~~gi~~~~L~k~~~~~~g 95 (621)
T 2hiv_A 19 SHMEFKVIAEYFDKLEKIS---SRLQLTALLADLLSKSDKTIIDKVVYIIQGKLWPDFLGYPELGIGEKFLIKAISIATN 95 (621)
T ss_dssp --CBTHHHHHHHHHHHHCC---CHHHHHHHHHHHHHTSCGGGHHHHHHHTTTCSSCGGGCCCCCCCCHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHhcCchHHHHHHHHHhCCcCcccccccccCCCHHHHHHHHHHHHC
Confidence 5678899999999998765 46789999999999999999999999998875 789999999999999988
Q ss_pred cCcccccccccchhHHHHHHHHHHHHHHHHHhhCCChHHHHHHHhc
Q 001045 895 MNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMN 940 (1176)
Q Consensus 895 ~~~~~~~~~~~~~~~~~~~l~~~~~~v~~ay~~~pdl~~v~~~L~~ 940 (1176)
++. ..+++.|....|+..++..++.
T Consensus 96 ~~~---------------------~~~~~~~~~~GDlg~~a~~~~~ 120 (621)
T 2hiv_A 96 TDE---------------------NSVENLYKTIGDLGEVARRLKS 120 (621)
T ss_dssp CCH---------------------HHHHHHHHHHCCHHHHHHHHHH
T ss_pred cCH---------------------HHHHHHHHhcCCHHHHHHHHHh
Confidence 764 2345566777777777766654
No 105
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.03 E-value=0.034 Score=46.23 Aligned_cols=48 Identities=17% Similarity=0.226 Sum_probs=39.7
Q ss_pred hhhhHhHHHHHhhhcCCcchhhHHHHHHHHhcccchhhhhccccccCCCCC
Q 001045 587 KTYGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYDNQEGDRG 637 (1176)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (1176)
+.|.+.|.||.+| |= +-+..++.+|.++.|||++|++..|+.++.+.|
T Consensus 7 ~~~~~~l~~L~~M--GF-~d~~~n~~AL~~~~Gdv~~Ave~L~~~~~~~~~ 54 (54)
T 2dah_A 7 GHFQVQLEQLRSM--GF-LNREANLQALIATGGDVDAAVEKLRQSSGPSSG 54 (54)
T ss_dssp CSSHHHHHHHHHH--TC-CCHHHHHHHHHHHTSCHHHHHHHHHHHSCSSCC
T ss_pred hhHHHHHHHHHHc--CC-CcHHHHHHHHHHcCCCHHHHHHHHHhCCCcCCC
Confidence 3678889999998 42 456678999999999999999999998876643
No 106
>3gde_A DNA ligase; DNA-binding domain, adenylation domain, OB-fold domain, ATP-binding, cell cycle, cell division, DNA damage, DNA recombination; HET: DNA; 2.30A {Archaeoglobus fulgidus}
Probab=93.52 E-value=0.18 Score=61.22 Aligned_cols=70 Identities=11% Similarity=0.169 Sum_probs=59.7
Q ss_pred CcHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHhhcchh-hHHHHHHHHhhccc-------cCcchhhHHHHHHHhhccC
Q 001045 825 LLIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREK-EMKFLVRTLVRNLR-------IGAMMRTILPALAQAVVMN 896 (1176)
Q Consensus 825 LTi~eV~~~L~~IA~~~g~~s~~~K~~il~~Ll~~~~~~-E~k~LvRiIlk~LR-------iG~~~~tvl~aLa~A~~~~ 896 (1176)
+...++-+.+++|++.+ +...|.++|.++|+.+++. +.-++++++++.+. .|++++++.++++++++++
T Consensus 4 m~~~~~a~~~~~i~~t~---~r~~k~~~l~~~~~~~~~~~~~~~~~~l~~g~~~p~~~~~~~gi~~~~l~~~~~~~~g~~ 80 (558)
T 3gde_A 4 MLFAEFAEFCERLEKIS---STLELTARIAAFLQKIEDERDLYDVVLFITGKVYPPWDERELGVGIGLLYEALENVSGVK 80 (558)
T ss_dssp CBHHHHHHHHHHHTTCC---CHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTCSSCTTSSCCCCCCHHHHHHHHHHHHCCC
T ss_pred ccHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHhCCchhhHHHHHHHHcCCCCcccccceeCcChHHHHHHHHHHHCcC
Confidence 56788888999998654 5678999999999999987 88888999987663 5999999999999999876
Q ss_pred c
Q 001045 897 S 897 (1176)
Q Consensus 897 ~ 897 (1176)
.
T Consensus 81 ~ 81 (558)
T 3gde_A 81 R 81 (558)
T ss_dssp H
T ss_pred H
Confidence 5
No 107
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.10 E-value=0.063 Score=45.88 Aligned_cols=43 Identities=23% Similarity=0.395 Sum_probs=37.0
Q ss_pred hhHhHHHHHhhhcCCcchhhHHHHHHHHhcccchhhhhccccccCC
Q 001045 589 YGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYDNQEG 634 (1176)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (1176)
-++.|.||+.|-.-+ ...|+.+|+...+|++.||+.||+++..
T Consensus 15 ~~e~i~qF~~iTg~~---~~~A~~~Le~~~WnLe~Av~~ff~~~~~ 57 (62)
T 2dal_A 15 LKGLIQQFTTITGAS---ESVGKHMLEACNNNLEMAVTMFLDGGGS 57 (62)
T ss_dssp HHHHHHHHHHHTCCC---HHHHHHHHHTTTSCHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHhCCC---HHHHHHHHHHcCCCHHHHHHHHHcCCCC
Confidence 356799999997543 8899999999999999999999997653
No 108
>2c5u_A RNA ligase, T4 RNA ligase 1; nucleotidyl transferase, ATP-binding; HET: APC; 2.21A {Bacteriophage T4}
Probab=93.04 E-value=0.45 Score=54.92 Aligned_cols=132 Identities=14% Similarity=0.123 Sum_probs=81.0
Q ss_pred ceEEEEEecceeEEEEEEeeCCeEEEEcCCCccCCC-----------CchhHHHHHHhhcCCCCCCeEEEEEEEEEecCC
Q 001045 979 KAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTS-----------RFPDLISIINEFCKPAAGTFILDAEVVAIDRKN 1047 (1176)
Q Consensus 979 ~~f~~E~KyDGeR~QiH~~~~g~V~ifSR~g~d~T~-----------~ypdl~~~l~~~~~~~~~~~ILDGElVa~d~~~ 1047 (1176)
.++.++.|+||.=+.+.. .+|++.+.||++-.... .+.++.+.+..++ ..++++=||++.-. .
T Consensus 93 ~pv~V~eK~DGslv~~~~-~~G~l~~~SKgs~~~~~a~~~~~~l~~~~~~~l~~~~~~l~---~~~~t~~fE~~~pe--n 166 (375)
T 2c5u_A 93 DVDYILTKEDGSLVSTYL-DGDEILFKSKGSIKSEQALMANGILMNINHHRLRDRLKELA---EDGFTANFEFVAPT--N 166 (375)
T ss_dssp GEEEEEEECCSEEEEEEE-ETTEEEEEETTBSSSHHHHHHHHHHHSGGGHHHHHHHHHHH---HTTEEEEEEEECTT--S
T ss_pred CCEEEEEecCCeEEEEEE-ECCEEEEEeCCCCCChHHHHHHHHHhhhcchHHHHHHHHhc---CCCCEEEEEEcCCC--C
Confidence 589999999999976666 58999999999866421 1112222333322 46799999999732 1
Q ss_pred CCcccChHHHhhhhcCCCCchhhhcccccceEEEEEEeeeeC-CcccccCCHHHHHHHHHHhhcccCCCcEEEeEEEEEc
Q 001045 1048 GCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFAN-GEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVE 1126 (1176)
Q Consensus 1048 g~~~~pFq~L~~R~r~~~~~~i~~~~~~~~v~~~vFDiL~ln-G~~Ll~~Pl~eRr~lL~~~~~~~~~~~i~~~~~~~v~ 1126 (1176)
.-++++ .+ ..+++|||.... |+- +|+.++.++.+ +.-. .++...++
T Consensus 167 -~hVl~Y-------------------~~--~~L~L~~i~~n~tg~~---l~~~e~~~~a~--~g~~------~V~~~~~~ 213 (375)
T 2c5u_A 167 -RIVLAY-------------------QE--MKIILLNVRENETGEY---ISYDDIYKDAT--LRPY------LVERYEID 213 (375)
T ss_dssp -CSSSCC-------------------SS--CEEEEEEEEETTTCCB---CCHHHHHHCTT--TGGG------BCCEEECS
T ss_pred -ceeccC-------------------CC--CCEEEEEEEEcCCCcE---ecHHHHHHHHh--hCCC------cCceeecc
Confidence 011111 11 469999988755 444 69999987765 3222 22222221
Q ss_pred CCCCCCccccCHHHHHHHHHHHHhCCCceEEEecCC
Q 001045 1127 GDDNCLTSDVSLSKINNFLEEALHSSCEGIIVKSLD 1162 (1176)
Q Consensus 1127 ~~~~~~~~~~~~eei~~~~~~ai~~g~EGlmvK~ld 1162 (1176)
.+++.+..+. ..+.||+|+|..+
T Consensus 214 -----------l~ell~~~~~--~~~~EGfVir~~~ 236 (375)
T 2c5u_A 214 -----------SPKWIEEAKN--AENIEGYVAVMKD 236 (375)
T ss_dssp -----------STHHHHHHHH--CSSCCEEEEEETT
T ss_pred -----------HHHHHHHHhh--CCCCceEEEEecC
Confidence 1233333222 6789999999875
No 109
>1x9n_A DNA ligase I; 5'-adenylated nicked DNA, protein-DNA complex, L complex; HET: DNA DOC AMP; 3.00A {Homo sapiens} SCOP: a.235.1.1 b.40.4.6 d.142.2.1
Probab=93.02 E-value=0.19 Score=62.63 Aligned_cols=73 Identities=19% Similarity=0.129 Sum_probs=63.7
Q ss_pred CCCCcHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHhh---cchhhHHHHHHHHhhcc-------ccCcchhhHHHHHHH
Q 001045 822 PPPLLIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCS---CREKEMKFLVRTLVRNL-------RIGAMMRTILPALAQ 891 (1176)
Q Consensus 822 ~~~LTi~eV~~~L~~IA~~~g~~s~~~K~~il~~Ll~~---~~~~E~k~LvRiIlk~L-------RiG~~~~tvl~aLa~ 891 (1176)
..++...++-+.+++|++++ +...|.++|.++|+. +++.+.-|.+.++++.| .+|++++++.+++++
T Consensus 53 ~~~~~~~~la~~~~~i~~t~---~r~~k~~~l~~~~~~~~~~~~~dl~~~v~ll~g~l~P~~~~~elgi~~~~L~k~i~~ 129 (688)
T 1x9n_A 53 GQKVPYLAVARTFEKIEEVS---ARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNHLGPPQQGLELGVGDGVLLKAVAQ 129 (688)
T ss_dssp TSCCBHHHHHHHHHHHHTCC---CHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHTCSSCGGGCCCCCCCHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHHhhcCChHHHHHHHHHHcCCCCccccccccCcChHHHHHHHHH
Confidence 45788999999999998654 578899999999999 78999999999999775 469999999999999
Q ss_pred hhccCc
Q 001045 892 AVVMNS 897 (1176)
Q Consensus 892 A~~~~~ 897 (1176)
+++.+.
T Consensus 130 ~~g~~~ 135 (688)
T 1x9n_A 130 ATGRQL 135 (688)
T ss_dssp HHTCCH
T ss_pred HHCcCH
Confidence 998765
No 110
>2cfm_A Thermostable DNA ligase; protein-nucleotide complex, cell cycle, cell division, DNA damage, DNA recombination, DNA repair, DNA replication; HET: AMP; 1.8A {Pyrococcus furiosus} PDB: 3rr5_A*
Probab=92.70 E-value=0.25 Score=60.15 Aligned_cols=91 Identities=13% Similarity=0.177 Sum_probs=71.7
Q ss_pred cHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHhhcchhhHHHHHHHHhhccc-------cCcchhhHHHHHHHhhccCcc
Q 001045 826 LIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLR-------IGAMMRTILPALAQAVVMNSS 898 (1176)
Q Consensus 826 Ti~eV~~~L~~IA~~~g~~s~~~K~~il~~Ll~~~~~~E~k~LvRiIlk~LR-------iG~~~~tvl~aLa~A~~~~~~ 898 (1176)
...++-+.+++|+..+ +...|.++|.++|+.+++.+..|.++++++.+- .|++++++.++++++++++.
T Consensus 2 ~f~~~a~~~~~l~~t~---~r~~k~~~l~~~~~~~~~~d~~~~~~ll~~~l~P~~~~~~~gi~~~~L~~~~~~~~g~~~- 77 (561)
T 2cfm_A 2 RYLELAQLYQKLEKTT---MKLIKTRLVADFLKKVPDDHLEFIPYLILGEVFPEWDERELGVGEKLLIKAVAMATGIDA- 77 (561)
T ss_dssp BHHHHHHHHHHHHTCC---CHHHHHHHHHHHHHHSCGGGTTTHHHHHTTCSSCTTCCCCCCCCHHHHHHHHHHHHSCCH-
T ss_pred cHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhcCchHHHHHHHHHhCCCCccccccccCCCHHHHHHHHHHHHCcCH-
Confidence 3567778888888654 577899999999999999999999999987663 69999999999999988764
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHhhCCChHHHHHHHhc
Q 001045 899 LEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMN 940 (1176)
Q Consensus 899 ~~~~~~~~~~~~~~~l~~~~~~v~~ay~~~pdl~~v~~~L~~ 940 (1176)
..+.+.|....|+..++..++.
T Consensus 78 --------------------~~~~~~~~~~GDlg~~~~~~~~ 99 (561)
T 2cfm_A 78 --------------------KEIEESVKDTGDLGESIALAVK 99 (561)
T ss_dssp --------------------HHHHHHHHHHSCHHHHHHHHHH
T ss_pred --------------------HHHHHHHHhcCCHHHHHHHHhc
Confidence 2344556666677766666553
No 111
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=92.35 E-value=0.095 Score=41.71 Aligned_cols=41 Identities=17% Similarity=0.366 Sum_probs=35.6
Q ss_pred hhHhHHHHHhhhcCCcchhhHHHHHHHHhcccchhhhhcccccc
Q 001045 589 YGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYDNQ 632 (1176)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (1176)
.++.|.||+.|-.- ....|+..|+...+|++.||+.||+++
T Consensus 5 ~~~~i~~F~~iTg~---~~~~A~~~L~~~~wdle~Ai~~ff~~~ 45 (46)
T 1v92_A 5 RQDALREFVAVTGA---EEDRARFFLESAGWDLQIALASFYEDG 45 (46)
T ss_dssp HHHHHHHHHHHTCC---CHHHHHHHHHHTTSCSHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCc---CHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 45679999998753 478999999999999999999999864
No 112
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=92.13 E-value=0.18 Score=44.63 Aligned_cols=46 Identities=15% Similarity=0.322 Sum_probs=39.3
Q ss_pred hhhhHhHHHHHhhhcCCcchhhHHHHHHHHhcccchhhhhccccccCCC
Q 001045 587 KTYGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYDNQEGD 635 (1176)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (1176)
+.|.+.|.|+++| |= +-|..++..|.++.|||++|++..|+.+.-+
T Consensus 27 ~~ye~qi~qL~eM--GF-~dr~~~~~AL~~t~Gnve~Ave~L~~~~~~~ 72 (74)
T 1vej_A 27 GRYQQELEELKAL--GF-ANRDANLQALVATDGDIHAAIEMLLGASGPS 72 (74)
T ss_dssp TTSHHHHHHHHHH--TC-CCHHHHHHHHHHTTSCHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHc--CC-CcHHHHHHHHHHhCCCHHHHHHHHHhCCCCC
Confidence 5688899999998 43 5688999999999999999999999876544
No 113
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=91.83 E-value=0.14 Score=43.11 Aligned_cols=44 Identities=20% Similarity=0.252 Sum_probs=37.4
Q ss_pred hhhhhHhHHHHHhhhcCCcchhhHHHHHHHHhcccchhhhhcccccc
Q 001045 586 IKTYGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYDNQ 632 (1176)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (1176)
.+.|.+.|.|+.+| |= +-|..++.+|.++.||+++|++..|+.+
T Consensus 14 e~~~~~qi~~L~~M--GF-~d~~~~~~AL~~~~gnve~Ave~L~~~~ 57 (58)
T 1wr1_B 14 EERYEHQLRQLNDM--GF-FDFDRNVAALRRSGGSVQGALDSLLNGD 57 (58)
T ss_dssp HHHTHHHHHHHHHH--TC-CCHHHHHHHHHHHTSCHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHc--CC-CcHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 46788899999998 43 5688889999999999999999988753
No 114
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=91.65 E-value=0.12 Score=41.47 Aligned_cols=41 Identities=22% Similarity=0.282 Sum_probs=35.3
Q ss_pred hhhhHhHHHHHhhhcCCcchhhHHHHHHHHhcccchhhhhcccc
Q 001045 587 KTYGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYD 630 (1176)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (1176)
+.|.+.|.|+.+| |- +-|..++..|.++.||+++|++..|+
T Consensus 5 ~~~~~~i~~L~~M--GF-~d~~~~~~AL~~~~gnv~~Ave~L~~ 45 (46)
T 2bwb_A 5 ERYEHQLRQLNDM--GF-FDFDRNVAALRRSGGSVQGALDSLLN 45 (46)
T ss_dssp HHTHHHHHHHHHT--TC-CCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHc--CC-CcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 5688889999988 43 56788899999999999999998876
No 115
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=91.19 E-value=0.22 Score=40.97 Aligned_cols=43 Identities=14% Similarity=0.247 Sum_probs=36.9
Q ss_pred hhhhHhHHHHHhhhcCCcchhhHHHHHHHHhcccchhhhhcccccc
Q 001045 587 KTYGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYDNQ 632 (1176)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (1176)
+.|.+.|.|++.| | =+.|..++..|.+|.||+++|++..++++
T Consensus 10 ~~~~~~l~~L~~M--G-F~~~~~~~~AL~~t~gn~e~A~e~L~~~~ 52 (52)
T 2jy5_A 10 VRFQQQLEQLSAM--G-FLNREANLQALIATGGDINAAIERLLGSS 52 (52)
T ss_dssp TTTHHHHHHHHHT--T-CCCHHHHHHHHHHHTTCHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHc--C-CCCHHHHHHHHHHhCCCHHHHHHHHHhCc
Confidence 5678889999988 3 36799999999999999999999988753
No 116
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=90.19 E-value=0.22 Score=41.12 Aligned_cols=44 Identities=16% Similarity=0.240 Sum_probs=37.1
Q ss_pred hhhhhHhHHHHHhhhcCCcchhhHHHHHHHHhcccchhhhhcccccc
Q 001045 586 IKTYGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYDNQ 632 (1176)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (1176)
.+.|.+.|.|++.| | =+.|..++..|.+|.||+++|++..++.+
T Consensus 8 e~~~~~~l~~L~~M--G-F~~~~~~~~AL~~t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 8 EVRFQQQLEQLNSM--G-FINREANLQALIATGGDINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHHHHHTT--T-CCCHHHHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred hhHHHHHHHHHHHc--C-CCCHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 45688888888888 3 35799999999999999999999988753
No 117
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.82 E-value=0.21 Score=43.24 Aligned_cols=40 Identities=20% Similarity=0.274 Sum_probs=34.6
Q ss_pred HhHHHHHhhhcCCcchhhHHHHHHHHhcccchhhhhccccccC
Q 001045 591 EEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYDNQE 633 (1176)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (1176)
+.|.||+.|-.- ..+.|+..|+.+.+|++.||+.||.++.
T Consensus 19 ~~i~qF~~iTg~---~~~~A~~~Le~~~WdLe~Al~~ff~~~~ 58 (66)
T 2dzl_A 19 VMINQFVLAAGC---AADQAKQLLQAAHWQFETALSTFFQETN 58 (66)
T ss_dssp HHHHHHHHHHCC---CHHHHHHHHHTTTTCHHHHHHHHHTCSC
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence 579999998643 4667999999999999999999998654
No 118
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=87.79 E-value=0.78 Score=40.42 Aligned_cols=47 Identities=11% Similarity=0.264 Sum_probs=39.2
Q ss_pred hhhhhhhHhHHHHHhhhcCCcchhhHHHHHHHHhcccchhhhhccccccCC
Q 001045 584 NAIKTYGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYDNQEG 634 (1176)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (1176)
...+.+++.|.||+.| | -.|+.|+..|.++.||+++|++..+++..-
T Consensus 24 ~~~~~~ee~I~~L~eM--G--F~r~~a~~AL~~~~~nve~Ave~Ll~~~~p 70 (73)
T 1vg5_A 24 GRVAASEEQIQKLVAM--G--FDRTQVEVALAAADDDLTVAVEILMSQSGP 70 (73)
T ss_dssp CCSCCCHHHHHHHHTT--T--CCHHHHHHHHHHHTSCHHHHHHHHHTCSCS
T ss_pred cCCcccHHHHHHHHHc--C--CCHHHHHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 3455567789999988 4 589999999999999999999999986553
No 119
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.78 E-value=0.4 Score=41.56 Aligned_cols=44 Identities=23% Similarity=0.215 Sum_probs=37.1
Q ss_pred hhHhHHHHHhhhcCCcchhhHHHHHHHHhcccchhhhhccccccCC
Q 001045 589 YGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYDNQEG 634 (1176)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (1176)
.++.|.||+.|-.. .....|+.+|+...+|++.||+.||++.++
T Consensus 18 ~~e~i~qF~~ITg~--~d~~~A~~~Le~~~WnLe~Av~~ff~~~~~ 61 (67)
T 2dam_A 18 QTEKLLQFQDLTGI--ESMDQCRHTLEQHNWNIEAAVQDRLNEQEG 61 (67)
T ss_dssp HHHHHHHHHHHHCC--SCHHHHHHHHHHHTSCHHHHHHHHHHSSCS
T ss_pred HHHHHHHHHHHhCC--CCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 45679999999862 246789999999999999999999997653
No 120
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=87.20 E-value=0.39 Score=36.80 Aligned_cols=38 Identities=21% Similarity=0.291 Sum_probs=32.2
Q ss_pred hhhHhHHHHHhhhcCCcchhhHHHHHHHHhcccchhhhhccc
Q 001045 588 TYGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYY 629 (1176)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (1176)
.+++.|.||+.| |- ++..|+..|..+.||+++|++..|
T Consensus 3 ~~~~~i~~L~~m--Gf--~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 3 GLNSKIAQLVSM--GF--DPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp CHHHHHHHHHHT--TC--CHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred hHHHHHHHHHHc--CC--CHHHHHHHHHHcCCCHHHHHHHHC
Confidence 356789999998 54 689999999999999999998654
No 121
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=85.08 E-value=0.97 Score=39.09 Aligned_cols=47 Identities=13% Similarity=0.015 Sum_probs=38.3
Q ss_pred hhhhhHhHHHHHhhhcCCcchhhHHHHHHHHhcccchhhhhccccccCCC
Q 001045 586 IKTYGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYDNQEGD 635 (1176)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (1176)
.+.|.++|.|+..|= =+-+...+..|.+|.|||++|++.-|+.++..
T Consensus 16 e~~y~~ql~qL~~MG---F~d~~an~~AL~at~Gnve~Ave~L~~~~~~~ 62 (67)
T 2dna_A 16 EVRFSKEMECLQAMG---FVNYNANLQALIATDGDTNAAIYKLKSSQGFS 62 (67)
T ss_dssp HHHTHHHHHHHHHHT---CCCHHHHHHHHHHTTSCHHHHHHHHHHCCSSS
T ss_pred HHHHHHHHHHHHHcC---CCcHHHHHHHHHHcCCCHHHHHHHHHhCCCcc
Confidence 456788888888773 24567779999999999999999999987754
No 122
>4htp_A DNA ligase 4; helical domain, DNA binding domain, DNA, ligase-HYD complex; HET: DNA; 2.25A {Homo sapiens} PDB: 4hto_A*
Probab=84.85 E-value=2.2 Score=46.16 Aligned_cols=105 Identities=12% Similarity=0.089 Sum_probs=70.5
Q ss_pred CCCcHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHhhc-------------chhhHHHHHHHHhhcc-----ccCcchhh
Q 001045 823 PPLLIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSC-------------REKEMKFLVRTLVRNL-----RIGAMMRT 884 (1176)
Q Consensus 823 ~~LTi~eV~~~L~~IA~~~g~~s~~~K~~il~~Ll~~~-------------~~~E~k~LvRiIlk~L-----RiG~~~~t 884 (1176)
.++...++-+.+++|.+.++ ..+|.++|.++++.. .+...-.++|+|+=+. -.|+++++
T Consensus 12 ~~~~F~~l~~~~e~Ie~ts~---rl~k~~il~~f~~~~~~~~~~l~~~~~~~~~dly~~l~ll~P~~d~~r~~ygi~e~~ 88 (240)
T 4htp_A 12 SHVPFADLCSTLERIQKSKG---RAEKIRHFREFLDSWRKFHDALHKNHKDVTDSFYPAMRLILPQLERERMAYGIKETM 88 (240)
T ss_dssp GTSBHHHHHHHHHHHHHCSS---HHHHHHHHHHHHHHHHHHHHHHTTTCSSCCCCSHHHHHHHSGGGCCSSCCCCCCHHH
T ss_pred cCCcHHHHHHHHHHHHhhhc---hHHHHHHHHHHHHHHHhhccccccCcccCcchHHHHHHHhCccccccccccCCCHHH
Confidence 45778899999999987654 678899999999985 2456677789888543 28999999
Q ss_pred HHHHHHHhhccCcccccccccchhHHHHHHHHHHHHHHHHHhhCCChHHHHHHHhc
Q 001045 885 ILPALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMN 940 (1176)
Q Consensus 885 vl~aLa~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~ay~~~pdl~~v~~~L~~ 940 (1176)
+.++++++++.+.... --..|..|.. -...|....|++.++..++.
T Consensus 89 L~Kai~~~~g~~~~~~---------~~~~L~~wk~-~~~~~~~~GDlg~va~~~~~ 134 (240)
T 4htp_A 89 LAKLYIELLNLPRDGK---------DALKLLNYRT-PTGTHGDAGDFAMIAYFVLK 134 (240)
T ss_dssp HHHHHHHHTTCCTTSH---------HHHHHHTC-----------CCHHHHHHHHHT
T ss_pred HHHHHHHHHCCCcchH---------HHHHHHhccc-cccccccCCCHHHHHHHHHH
Confidence 9999999998875210 0012222211 11456678999999988764
No 123
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=83.04 E-value=1.1 Score=39.56 Aligned_cols=46 Identities=20% Similarity=0.320 Sum_probs=38.4
Q ss_pred hhhhHhHHHHHhhhcCCcchhhHHHHHHHHhcccchhhhhccccccCCCC
Q 001045 587 KTYGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYDNQEGDR 636 (1176)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (1176)
+..++.|.|++.| | =.|..|...|..|.||+++|++..+++++...
T Consensus 27 ~~~~~~v~~L~~M--G--F~~~~a~~AL~~t~~nve~Ave~L~~~~~d~~ 72 (73)
T 1wiv_A 27 DIDQSSVDTLLSF--G--FAEDVARKALKASGGDIEKATDWVFNNSGPSS 72 (73)
T ss_dssp SSCHHHHHHHHHH--T--CCHHHHHHHHHHTTSCHHHHHHHHHHSCCSSC
T ss_pred CCCHHHHHHHHHc--C--CCHHHHHHHHHHhCCCHHHHHHHHHhCCCCCC
Confidence 3456778999988 3 47899999999999999999999999876543
No 124
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=80.99 E-value=1.6 Score=39.39 Aligned_cols=42 Identities=24% Similarity=0.211 Sum_probs=37.1
Q ss_pred hhHhHHHHHhhhcCCcchhhHHHHHHHHhcccchhhhhccccccCC
Q 001045 589 YGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYDNQEG 634 (1176)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (1176)
.++.|+||+.| | -.|..|+.+|.+|.||+++|++..|+++..
T Consensus 29 ~ee~I~~Lv~M--G--F~~~~A~~AL~~t~gdve~A~e~L~sh~~~ 70 (83)
T 1veg_A 29 SQESINQLVYM--G--FDTVVAEAALRVFGGNVQLAAQTLAHHGGS 70 (83)
T ss_dssp CHHHHHHHHHH--S--CCHHHHHHHHHHTTTCHHHHHHHHHHHTSS
T ss_pred CHHHHHHHHHc--C--CCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 57789999999 3 589999999999999999999999987653
No 125
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=78.21 E-value=0.85 Score=38.47 Aligned_cols=46 Identities=11% Similarity=0.205 Sum_probs=36.3
Q ss_pred hhhHhHHHHHhhhcCCcchhhHHHHHHHHhcccchhhhhccccccCCCCC
Q 001045 588 TYGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYDNQEGDRG 637 (1176)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (1176)
+.++.|++++.| + =++..|...|.+|.|||++|+|--|++++.+.|
T Consensus 18 se~e~V~~LvsM---G-Fs~~qA~kALKat~~NvErAaDWLFSH~D~~~~ 63 (63)
T 1wgn_A 18 SERQCVETVVNM---G-YSYECVLRAMKKKGENIEQILDYLFAHSGPSSG 63 (63)
T ss_dssp HHHHHHHHHHHH---H-CCHHHHHHHHHHHCSCHHHHHHHHHHHSCCCCC
T ss_pred chHHHHHHHHHc---C-CCHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCC
Confidence 445556655544 2 578999999999999999999999999886643
No 126
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=73.98 E-value=1.8 Score=40.96 Aligned_cols=43 Identities=16% Similarity=0.314 Sum_probs=34.6
Q ss_pred hhhHhHHHHHhhhcCCcchhhHHHHHHHHhcccchhhhhccccccC
Q 001045 588 TYGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYDNQE 633 (1176)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (1176)
.|.+.|.||.+| |=+-+..++++|.++.|||++|++..++.+.
T Consensus 65 ~~~~qL~qL~eM---GF~d~~~ni~AL~~t~Gdve~AVe~L~~~~~ 107 (108)
T 2cwb_A 65 QWQPQLQQLRDM---GIQDDELSLRALQATGGDIQAALELIFAGGA 107 (108)
T ss_dssp TTHHHHHHHHTT---TCCCHHHHHHHHHHHTSCHHHHHHHHHHTSC
T ss_pred chHHHHHHHHHc---CCCCHHHHHHHHHHhCCCHHHHHHHHHhcCC
Confidence 566677777665 3355789999999999999999999998654
No 127
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=73.22 E-value=2 Score=34.77 Aligned_cols=40 Identities=13% Similarity=0.237 Sum_probs=35.0
Q ss_pred hhhhHhHHHHHhhhcCCcchhhHHHHHHHHhcccchhhhhcccc
Q 001045 587 KTYGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYD 630 (1176)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (1176)
+.+++.|.|++.| | =.|..|...|.++.||+++|++..++
T Consensus 6 ~~~~~~i~~L~~M--G--F~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 6 SEYETMLTEIMSM--G--YERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHHHHT--T--CCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHc--C--CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4467789999988 4 48999999999999999999998887
No 128
>3l2p_A DNA ligase 3; DNA ligase, DNA repair, ATP-binding, cell cycle, cell divisi damage; HET: DNA AMP; 3.00A {Homo sapiens}
Probab=68.34 E-value=12 Score=45.56 Aligned_cols=72 Identities=11% Similarity=0.167 Sum_probs=54.4
Q ss_pred CCCcHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHhhcchh-----hHHHHHHHHhh---ccccCcchhhHHHHHHHhhc
Q 001045 823 PPLLIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREK-----EMKFLVRTLVR---NLRIGAMMRTILPALAQAVV 894 (1176)
Q Consensus 823 ~~LTi~eV~~~L~~IA~~~g~~s~~~K~~il~~Ll~~~~~~-----E~k~LvRiIlk---~LRiG~~~~tvl~aLa~A~~ 894 (1176)
+.++..++-+.+.+|++.+ +...|.++|..++...++. +.--++|.|+= ..-.|++++++.++++++++
T Consensus 5 ~d~~F~~f~~l~~~ie~~s---~r~~k~~il~~~~~~~~~~~~~~~~~y~~~~~l~P~~~~~~~gi~ek~l~k~~~~~~g 81 (579)
T 3l2p_A 5 KDCLLREFRKLCAMVADNP---SYNTKTQIIQDFLRKGSAGDGFHGDVYLTVKLLLPGVIKTVYNLNDKQIVKLFSRIFN 81 (579)
T ss_dssp GGGBHHHHHHHHHHHHTCC---CHHHHHHHHHHHHHCC-------CCHHHHHHHHCTTTSCCCCSCCHHHHHHHHHHHHT
T ss_pred ccCcHHHHHHHHHHHHhcc---ChHHHHHHHHHHHHhcCCcccccchHHHHHHHhCCCccCcccCCcHHHHHHHHHHHHC
Confidence 3466788888888888654 5678899999999998653 45555677772 23579999999999999998
Q ss_pred cCc
Q 001045 895 MNS 897 (1176)
Q Consensus 895 ~~~ 897 (1176)
++.
T Consensus 82 ~~~ 84 (579)
T 3l2p_A 82 CNP 84 (579)
T ss_dssp SCH
T ss_pred cCH
Confidence 764
No 129
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=67.68 E-value=4.1 Score=33.01 Aligned_cols=41 Identities=7% Similarity=0.179 Sum_probs=34.2
Q ss_pred hhHhHHHHHhhhcCCcchhhHHHHHHHHhcccchhhhhccccc
Q 001045 589 YGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYDN 631 (1176)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (1176)
.++.+.++..|.+.- .+.-+.+.|++++||+++|+++--.-
T Consensus 4 ~e~~v~~L~EMFP~~--~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 4 HESKLSILMDMFPAI--SKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHHHHHCSSS--CHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCC--CHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 357888888888754 77889999999999999999986653
No 130
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=67.24 E-value=3.8 Score=33.33 Aligned_cols=46 Identities=24% Similarity=0.281 Sum_probs=33.9
Q ss_pred CCchhhhhhhHhHHHHHhhhcCCcchhhHHHHHHHHhcccchhhhhcc
Q 001045 581 LQSNAIKTYGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLY 628 (1176)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (1176)
.|.++++--.+.+.|++.|==-+| -+-..++|+..+|||++|||.-
T Consensus 2 ~p~~~D~rl~~al~qMl~MGF~ne--gGWLt~LL~~k~gDI~~aLD~l 47 (52)
T 1q02_A 2 SPPEADPRLIESLSQMLSMGFSDE--GGWLTRLLQTKNYDIGAALDTI 47 (52)
T ss_dssp CCTTSCHHHHHHHHHHHTTTCCCT--TSHHHHHHHHTTTCHHHHHHHH
T ss_pred CCCCcChHHHHHHHHHHHcCCCcc--ccHHHHHHHHccCCHHHHHHHh
Confidence 355666667778888887743332 2467899999999999999964
No 131
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=65.91 E-value=5.4 Score=30.24 Aligned_cols=36 Identities=6% Similarity=0.049 Sum_probs=29.8
Q ss_pred HHHHHHHhhhccccccHHHHHHhHhhcCCchHHhhhhhh
Q 001045 455 EKMVQEIRNCLPTWVTQNQILDLISSSGRNIVDAVSNFY 493 (1176)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (1176)
++.+++|.++ .+++++....|..++||+..|+.-+|
T Consensus 5 ~~~i~~L~~m---Gf~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 5 NSKIAQLVSM---GFDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp HHHHHHHHHT---TCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred HHHHHHHHHc---CCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 4567777665 79999999999999999999987654
No 132
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=63.74 E-value=4.4 Score=31.54 Aligned_cols=38 Identities=18% Similarity=0.256 Sum_probs=32.0
Q ss_pred hHhHHHHHhhhcCCcchhhHHHHHHHHhcccchhhhhccccc
Q 001045 590 GEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYDN 631 (1176)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (1176)
++.|.|++.| | =.|..|+..|..+.||+++|++..+++
T Consensus 5 e~~i~~L~~M--G--F~~~~a~~AL~~~~~n~e~A~~~L~~~ 42 (43)
T 2g3q_A 5 SLAVEELSGM--G--FTEEEAHNALEKCNWDLEAATNFLLDS 42 (43)
T ss_dssp HHHHHHHHTT--T--SCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred HHHHHHHHHc--C--CCHHHHHHHHHHhCcCHHHHHHHHHcC
Confidence 4568888887 4 468999999999999999999987763
No 133
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=60.31 E-value=14 Score=32.31 Aligned_cols=45 Identities=16% Similarity=0.315 Sum_probs=40.0
Q ss_pred CChhHHHHHHHHHhhhccccccHHHHHHhHhhcCCchHHhhhhhhh
Q 001045 449 LDDEETEKMVQEIRNCLPTWVTQNQILDLISSSGRNIVDAVSNFYE 494 (1176)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (1176)
+..-.-+..+..+++++|. ++..++..+|..-++|++++++.++|
T Consensus 8 ~~~~~l~s~I~qV~DLfPd-LG~gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 8 MCGVELDSLISQVKDLLPD-LGEGFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp CSSHHHHHHHHHHHHHCCS-SCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHccc-CCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 3445677889999999998 78889999999999999999999999
No 134
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=58.94 E-value=23 Score=33.16 Aligned_cols=39 Identities=15% Similarity=0.208 Sum_probs=34.2
Q ss_pred HHHHHHHHhhhccccccHHHHHHhHhhcCCchHHhhhhhhh
Q 001045 454 TEKMVQEIRNCLPTWVTQNQILDLISSSGRNIVDAVSNFYE 494 (1176)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (1176)
-++.|+.|.++ +.|++++....|...+||+.+|+..+++
T Consensus 39 ~eekVk~L~Em--tG~seeeAr~AL~~~ngDl~~AI~~Lle 77 (104)
T 1wj7_A 39 FEEKVKQLIDI--TGKNQDECVIALHDCNGDVNRAINVLLE 77 (104)
T ss_dssp HHHHHHHHHHH--TCCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHHh--hCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 35567777777 6799999999999999999999999988
No 135
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.42 E-value=12 Score=33.76 Aligned_cols=43 Identities=16% Similarity=0.219 Sum_probs=36.7
Q ss_pred hhhHhHHHHHhhhcCCcchhhHHHHHHHHhcccchhhhhccccccCC
Q 001045 588 TYGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYDNQEG 634 (1176)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (1176)
..++.|.|++.| | -.+..|...|..+.||++.|++..+++.+.
T Consensus 28 ~~e~~i~~L~~M--G--F~~~~a~~AL~~t~~nve~A~ewL~~~~~d 70 (83)
T 2dai_A 28 VDEAALRQLTEM--G--FPENRATKALQLNHMSVPQAMEWLIEHAED 70 (83)
T ss_dssp CCHHHHHHHHHH--T--CCHHHHHHHHHHTTSCHHHHHHHHHHGGGC
T ss_pred CCHHHHHHHHHc--C--CCHHHHHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 356789999998 3 577999999999999999999999987653
No 136
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.98 E-value=6.1 Score=31.42 Aligned_cols=40 Identities=15% Similarity=0.242 Sum_probs=32.6
Q ss_pred hhhHhHHHHHhhhcCCcchhhHHHHHHHHhcccchhhhhcccccc
Q 001045 588 TYGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYDNQ 632 (1176)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (1176)
.+++.|.||+.| | -.+..|+..|..| ||+++|++..++++
T Consensus 8 ~~~~~v~~L~~M--G--F~~~~a~~AL~~~-~n~e~A~~~L~~h~ 47 (47)
T 2ekk_A 8 VNQQQLQQLMDM--G--FTREHAMEALLNT-STMEQATEYLLTHP 47 (47)
T ss_dssp SCHHHHHHHHHH--H--CCHHHHHHHHHHS-CSHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHc--C--CCHHHHHHHHHHc-CCHHHHHHHHHcCC
Confidence 356778999987 3 4679999999999 79999999887753
No 137
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=56.95 E-value=4.3 Score=32.53 Aligned_cols=40 Identities=10% Similarity=0.105 Sum_probs=34.1
Q ss_pred hHhHHHHHhhhcCCcchhhHHHHHHHHhcccchhhhhccccccC
Q 001045 590 GEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYDNQE 633 (1176)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (1176)
++.|+|++.+ | -+|..|+..|..+.+|+++|.+..|+..+
T Consensus 5 ~eaI~rL~~m---G-F~~~~a~~Al~a~~~n~e~A~~~Lf~~~~ 44 (47)
T 1dv0_A 5 KEAIERLKAL---G-FPESLVIQAYFACEKNENLAANFLLSQNF 44 (47)
T ss_dssp HHHHTTTTTT---T-CCHHHHHHHHTTTTSCHHHHHHHTTSCCC
T ss_pred HHHHHHHHHc---C-CCHHHHHHHHHHcCCCHHHHHHHHHhCcC
Confidence 4567777777 3 78999999999999999999999998654
No 138
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=56.93 E-value=7.2 Score=33.28 Aligned_cols=41 Identities=27% Similarity=0.415 Sum_probs=34.9
Q ss_pred hHhHHHHHhhhcCCcchhhHHHHHHHHhcc-cchhhhhccccccCC
Q 001045 590 GEEIDQFLKIINGNESLKGYAATLLEKTKG-NVSMALDLYYDNQEG 634 (1176)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 634 (1176)
++.|.||+.| | =.+..|...|..|.| |+++|++..+++++.
T Consensus 20 e~~i~~L~~M--G--F~~~~a~~AL~~t~~~nve~A~ewL~~~~~d 61 (64)
T 2cpw_A 20 GSALDVLLSM--G--FPRARAQKALASTGGRSVQTACDWLFSHSGP 61 (64)
T ss_dssp CCHHHHHHHH--T--CCHHHHHHHHHHTTTSCHHHHHHHHHSCCSC
T ss_pred HHHHHHHHHc--C--CCHHHHHHHHHHcCCCCHHHHHHHHHhCCCC
Confidence 3568999998 3 477999999999999 999999999987654
No 139
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=55.21 E-value=6.1 Score=33.65 Aligned_cols=40 Identities=15% Similarity=0.253 Sum_probs=33.9
Q ss_pred hHhHHHHHhhhcCCcchhhHHHHHHHHhcccchhhhhccccccC
Q 001045 590 GEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYDNQE 633 (1176)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (1176)
++.|.|++.| | -.|..|+..|..+.||+++|++..+++..
T Consensus 10 ~~~I~~L~~M--G--F~~~~a~~AL~~~~~nve~A~e~L~~~~~ 49 (63)
T 1wji_A 10 EKALKHITEM--G--FSKEASRQALMDNGNNLEAALNVLLTSNK 49 (63)
T ss_dssp HHHHHHHHTT--T--CCHHHHHHHHHHTTSCHHHHHHHHHHHSS
T ss_pred HHHHHHHHHc--C--CCHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 4567888877 3 57889999999999999999999998654
No 140
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=55.18 E-value=15 Score=29.57 Aligned_cols=39 Identities=23% Similarity=0.233 Sum_probs=31.8
Q ss_pred HHHHHHHHHhhhccccccHHHHHHhHhhcCCchHHhhhhhhh
Q 001045 453 ETEKMVQEIRNCLPTWVTQNQILDLISSSGRNIVDAVSNFYE 494 (1176)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (1176)
..++.++.|.+| .+++++....|.+++||+..|+.-+++
T Consensus 7 ~~~~~i~~L~~M---GF~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 7 EYETMLTEIMSM---GYERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHHHT---TCCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred cCHHHHHHHHHc---CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 355666766555 689999999999999999999987765
No 141
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.12 E-value=5 Score=34.06 Aligned_cols=41 Identities=15% Similarity=0.255 Sum_probs=35.5
Q ss_pred hhHhHHHHHhhhcCCcchhhHHHHHHHHhcccchhhhhccccccC
Q 001045 589 YGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYDNQE 633 (1176)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (1176)
.++.|.||+.| | =.|..|...|..|.||+++|++..+++.+
T Consensus 9 ~~~~v~~L~~M--G--F~~~~a~~AL~~t~~nve~A~e~L~~~~~ 49 (63)
T 2dak_A 9 PEDCVTTIVSM--G--FSRDQALKALRATNNSLERAVDWIFSHID 49 (63)
T ss_dssp CHHHHHHHHHH--T--CCHHHHHHHHHHTTSCSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHc--C--CCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 46778999998 4 35899999999999999999999998665
No 142
>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 E2, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* 3o2p_A 3o6b_A 3tdi_B 2l4e_A 2l4f_A
Probab=54.82 E-value=5.6 Score=43.71 Aligned_cols=43 Identities=26% Similarity=0.451 Sum_probs=37.4
Q ss_pred hhHhHHHHHhhhcCCcchhhHHHHHHHHhcccchhhhhccccccCC
Q 001045 589 YGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYDNQEG 634 (1176)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (1176)
.++.|.||+.|-+.+ ...|+..|+....|++.|+|-||.++++
T Consensus 15 ~~~~i~qF~~iTg~~---~~~A~~~L~~~~WdLe~Al~~ff~~~~~ 57 (270)
T 3bq3_A 15 EQEAIESFTSLTKCD---PKVSRKYLQRNHWNINYALNDYYDKEIG 57 (270)
T ss_dssp HHHHHHHHHHHHCCC---HHHHHHHHHTTTTCHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHcCCC---HHHHHHHHHHcCCCHHHHHHHHHhCccc
Confidence 466799999998765 5689999999999999999999997764
No 143
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=52.14 E-value=13 Score=32.72 Aligned_cols=38 Identities=13% Similarity=0.196 Sum_probs=32.3
Q ss_pred HHHHHHHHhhhccccccHHHHHHhHhhcCCchHHhhhhhhh
Q 001045 454 TEKMVQEIRNCLPTWVTQNQILDLISSSGRNIVDAVSNFYE 494 (1176)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (1176)
.++.|++|.+| .+++++....|..+++|+..|+.-+++
T Consensus 29 ~ee~I~~L~eM---GF~r~~a~~AL~~~~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 29 SEEQIQKLVAM---GFDRTQVEVALAAADDDLTVAVEILMS 66 (73)
T ss_dssp CHHHHHHHHTT---TCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred cHHHHHHHHHc---CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 45667777664 799999999999999999999988776
No 144
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=51.51 E-value=9.7 Score=35.65 Aligned_cols=41 Identities=17% Similarity=0.399 Sum_probs=35.1
Q ss_pred hhHhHHHHHhhhcCCcchhhHHHHHHHHhcccchhhhhcccccc
Q 001045 589 YGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYDNQ 632 (1176)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (1176)
+++-|.+++++-. -+++.|..+|..+.||+++|++..++..
T Consensus 39 ~eekVk~L~EmtG---~seeeAr~AL~~~ngDl~~AI~~Lleg~ 79 (104)
T 1wj7_A 39 FEEKVKQLIDITG---KNQDECVIALHDCNGDVNRAINVLLEGN 79 (104)
T ss_dssp HHHHHHHHHHHTC---CCHHHHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred HHHHHHHHHHhhC---CCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 5677888888832 4689999999999999999999999865
No 145
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=51.42 E-value=14 Score=28.59 Aligned_cols=37 Identities=11% Similarity=0.177 Sum_probs=30.6
Q ss_pred HHHHHHHhhhccccccHHHHHHhHhhcCCchHHhhhhhhh
Q 001045 455 EKMVQEIRNCLPTWVTQNQILDLISSSGRNIVDAVSNFYE 494 (1176)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (1176)
++.+++|.+ +.+++++....|..++||+..|+.-+++
T Consensus 5 e~~i~~L~~---MGF~~~~a~~AL~~~~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 5 SLAVEELSG---MGFTEEEAHNALEKCNWDLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHHT---TTSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHH---cCCCHHHHHHHHHHhCcCHHHHHHHHHc
Confidence 456677765 4799999999999999999999987765
No 146
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=48.06 E-value=13 Score=29.54 Aligned_cols=40 Identities=18% Similarity=0.051 Sum_probs=31.4
Q ss_pred hhHhHHHHHhhhcCCcchhhHHHHHHHHhcccchhhhhcccc
Q 001045 589 YGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYD 630 (1176)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (1176)
..+-|.||..|-+-+ --..|+.+||...+|+..|+.-||-
T Consensus 5 ~de~ia~F~~iTG~~--d~~~A~~~Lea~nWDLe~Av~~f~~ 44 (45)
T 3e21_A 5 REMILADFQACTGIE--NIDEAITLLEQNNWDLVAAINGVIP 44 (45)
T ss_dssp HHHHHHHHHHHHCCC--CHHHHHHHHHHTTTCHHHHHTTC--
T ss_pred HHHHHHHHHHHHCCC--CHHHHHHHHHHcCCcHHHHHHHHcC
Confidence 457799999965433 3468999999999999999999884
No 147
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=46.53 E-value=12 Score=33.69 Aligned_cols=44 Identities=14% Similarity=0.135 Sum_probs=37.1
Q ss_pred hhhhHhHHHHHhhhcCCcchhhHHHHHHHHhc-ccchhhhhccccccCC
Q 001045 587 KTYGEEIDQFLKIINGNESLKGYAATLLEKTK-GNVSMALDLYYDNQEG 634 (1176)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 634 (1176)
...++.|.||+.| | -.|..|...|..|. ||+++|++..|++.+.
T Consensus 27 ~~~e~~v~~L~~M--G--F~~~~a~~AL~~t~n~n~e~A~ewL~~h~~d 71 (84)
T 1vek_A 27 VANEEIVAQLVSM--G--FSQLHCQKAAINTSNAGVEEAMNWLLSHMDD 71 (84)
T ss_dssp CCCHHHHHHHHHH--T--CCHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHc--C--CCHHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 3467889999998 3 57899999999997 7999999999987653
No 148
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=46.09 E-value=13 Score=30.52 Aligned_cols=36 Identities=17% Similarity=0.190 Sum_probs=29.5
Q ss_pred hHhHHHHHhhhcCCcchhhHHHHHHHHhcccchhhhhccc
Q 001045 590 GEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYY 629 (1176)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (1176)
+.+|.|||.+ + =+|..|+..|..|.|||++|-+|--
T Consensus 10 e~~I~~L~~l---G-F~r~~ai~AL~~a~nnve~Aa~iL~ 45 (53)
T 2d9s_A 10 SSEIERLMSQ---G-YSYQDIQKALVIAHNNIEMAKNILR 45 (53)
T ss_dssp HHHHHHHHHH---T-CCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHc---C-CCHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3457777765 2 6899999999999999999988753
No 149
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.73 E-value=19 Score=30.46 Aligned_cols=51 Identities=18% Similarity=0.240 Sum_probs=35.1
Q ss_pred CCCccccCChhHHHHHHHHHhhhccccccHHHHHHhHhhcCCchHHhhhhhhhh
Q 001045 442 GSKDVTALDDEETEKMVQEIRNCLPTWVTQNQILDLISSSGRNIVDAVSNFYEH 495 (1176)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (1176)
|+.|..-+... .++.+.+...+ +-.+.++....|-.++.|+..|++.||+.
T Consensus 4 ~~~~~~~~s~~-~~e~i~qF~~i--Tg~~~~~A~~~Le~~~WnLe~Av~~ff~~ 54 (62)
T 2dal_A 4 GSSGGSAASSA-LKGLIQQFTTI--TGASESVGKHMLEACNNNLEMAVTMFLDG 54 (62)
T ss_dssp CCCCCCSSCHH-HHHHHHHHHHH--TCCCHHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred CccchhhcCcc-HHHHHHHHHHH--hCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 44444444333 23345544443 34678889999999999999999999983
No 150
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=43.18 E-value=19 Score=30.23 Aligned_cols=41 Identities=17% Similarity=0.327 Sum_probs=36.4
Q ss_pred HHHHHHHHHhhhccccccHHHHHHhHhhcCCchHHhhhhhhh
Q 001045 453 ETEKMVQEIRNCLPTWVTQNQILDLISSSGRNIVDAVSNFYE 494 (1176)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (1176)
.+++.++.|..+.|. ++++.+...|.+++||+..|+..+++
T Consensus 8 ~~ee~l~~L~emFP~-ld~~~I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 8 CSEEDLKAIQDMFPN-MDQEVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp SCHHHHHHHHHHCSS-SCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCC-CCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 366888899999886 78889999999999999999999877
No 151
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=42.81 E-value=26 Score=27.33 Aligned_cols=37 Identities=19% Similarity=0.322 Sum_probs=29.2
Q ss_pred HHHHHHhhhccccccHHHHHHhHhhcCCchHHhhhhhhh
Q 001045 456 KMVQEIRNCLPTWVTQNQILDLISSSGRNIVDAVSNFYE 494 (1176)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (1176)
+.+.+...+- ..+.+.....|-.++.|+..|++.||+
T Consensus 7 ~~i~~F~~iT--g~~~~~A~~~L~~~~wdle~Ai~~ff~ 43 (46)
T 1v92_A 7 DALREFVAVT--GAEEDRARFFLESAGWDLQIALASFYE 43 (46)
T ss_dssp HHHHHHHHHT--CCCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHh--CcCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 4455554443 357888999999999999999999998
No 152
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=42.46 E-value=24 Score=29.91 Aligned_cols=37 Identities=16% Similarity=0.257 Sum_probs=31.5
Q ss_pred HHHHHHHhhhccccccHHHHHHhHhhcCCchHHhhhhhhh
Q 001045 455 EKMVQEIRNCLPTWVTQNQILDLISSSGRNIVDAVSNFYE 494 (1176)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (1176)
++.+++|.+ +.+++++....|..+++|+..|+.-+++
T Consensus 10 ~~~I~~L~~---MGF~~~~a~~AL~~~~~nve~A~e~L~~ 46 (63)
T 1wji_A 10 EKALKHITE---MGFSKEASRQALMDNGNNLEAALNVLLT 46 (63)
T ss_dssp HHHHHHHHT---TTCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHH---cCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 456666655 4799999999999999999999988877
No 153
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=40.58 E-value=21 Score=29.49 Aligned_cols=47 Identities=9% Similarity=0.017 Sum_probs=34.8
Q ss_pred hhhhHhHHHHHhhhcCCcchhhHHHHHHHHhcccchhhhhccccccCCCC
Q 001045 587 KTYGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYDNQEGDR 636 (1176)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (1176)
+-|...+.||..|== .-+..-+++|.++.|||++|++--....+|+.
T Consensus 7 e~~a~~L~~L~eMGF---~D~~~N~~aL~~~~gnv~~aI~~Ll~~~~~~~ 53 (54)
T 2cp8_A 7 GQTAALMAHLFEMGF---CDRQLNLRLLKKHNYNILQVVTELLQLSGPSS 53 (54)
T ss_dssp TTHHHHHHHHHHHTC---CCHHHHHHHHTTTTTCHHHHHHHHHHHSSSCC
T ss_pred HhhHHHHHHHHHcCC---CcHHHHHHHHHHcCCCHHHHHHHHHhccCCCC
Confidence 345556666666633 44788999999999999999987776666554
No 154
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=39.67 E-value=24 Score=28.54 Aligned_cols=40 Identities=5% Similarity=0.205 Sum_probs=34.1
Q ss_pred HHHHHHHhhhccccccHHHHHHhHhhcCCchHHhhhhhhhh
Q 001045 455 EKMVQEIRNCLPTWVTQNQILDLISSSGRNIVDAVSNFYEH 495 (1176)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (1176)
+.-++.|..+.|+ ++..++...|.+++||+..|+..+.++
T Consensus 5 e~~v~~L~EMFP~-~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 5 ESKLSILMDMFPA-ISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHHHHCSS-SCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC-CCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 4667788888887 577789999999999999999998774
No 155
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=39.48 E-value=16 Score=29.75 Aligned_cols=33 Identities=18% Similarity=0.171 Sum_probs=27.3
Q ss_pred HhHHHHHhhhcCCcchhhHHHHHHHHhcccchhhhhc
Q 001045 591 EEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDL 627 (1176)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (1176)
++|.|||.+ | =+|..|+..|..|.|||++|-++
T Consensus 13 ~~Ia~Lm~m---G-Fsr~~ai~AL~~a~nnve~Aani 45 (52)
T 2ooa_A 13 AKIAKLMGE---G-YAFEEVKRALEIAQNNVEVARSI 45 (52)
T ss_dssp HHHHHHHHT---T-CCHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHc---C-CCHHHHHHHHHHhCCCHHHHHHH
Confidence 456666654 4 78999999999999999999876
No 156
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=39.25 E-value=26 Score=28.63 Aligned_cols=37 Identities=11% Similarity=0.243 Sum_probs=29.6
Q ss_pred HHHHHHHhhhccccc-cHHHHHHhHhhcCCchHHhhhhhhh
Q 001045 455 EKMVQEIRNCLPTWV-TQNQILDLISSSGRNIVDAVSNFYE 494 (1176)
Q Consensus 455 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (1176)
++.+++| ..+.+ .+++...+|..++||+..|+.-+++
T Consensus 12 ~~~l~~L---~~MGF~~~~~~~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 12 QQQLEQL---NSMGFINREANLQALIATGGDINAAIERLLG 49 (53)
T ss_dssp HHHHHHH---HTTTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHH---HHcCCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3444555 45578 8999999999999999999988876
No 157
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=38.39 E-value=34 Score=30.87 Aligned_cols=42 Identities=17% Similarity=0.208 Sum_probs=36.2
Q ss_pred hhHhHHHHHhhhcCCcchhhHHHHHHHHhcccchhhhhccccccCC
Q 001045 589 YGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYDNQEG 634 (1176)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (1176)
-++.|.||+.| | =.|..|+..|..+.||+++|++..+++..-
T Consensus 21 n~~~I~qL~~M--G--F~~~~a~~AL~~~n~n~e~A~ewL~~h~~D 62 (85)
T 2dkl_A 21 MSRLIKQLTDM--G--FPREPAEEALKSNNMNLDQAMSALLEKKVD 62 (85)
T ss_dssp HHHHHHHHHHH--T--CCHHHHHHHHHHTTSCHHHHHHHHHTTSCC
T ss_pred CHHHHHHHHHc--C--CCHHHHHHHHHHcCCCHHHHHHHHHHCcCC
Confidence 36789999998 3 478999999999999999999999998763
No 158
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=38.25 E-value=18 Score=30.55 Aligned_cols=31 Identities=13% Similarity=0.248 Sum_probs=27.7
Q ss_pred hccccccHHHHHHhHhhcCCchHHhhhhhhh
Q 001045 464 CLPTWVTQNQILDLISSSGRNIVDAVSNFYE 494 (1176)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (1176)
+.-+.+|++|..-.|.+++|||++|+.=+|.
T Consensus 26 LvsMGFs~~qA~kALKat~~NvErAaDWLFS 56 (63)
T 1wgn_A 26 VVNMGYSYECVLRAMKKKGENIEQILDYLFA 56 (63)
T ss_dssp HHHHHCCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3456899999999999999999999988876
No 159
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.62 E-value=18 Score=31.68 Aligned_cols=42 Identities=12% Similarity=0.079 Sum_probs=35.5
Q ss_pred hhHhHHHHHhhhcCCcchhhHHHHHHHHhcc-cchhhhhccccccCC
Q 001045 589 YGEEIDQFLKIINGNESLKGYAATLLEKTKG-NVSMALDLYYDNQEG 634 (1176)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 634 (1176)
-++.|.||+.| | =.|..|...|..|.| |+++|++..++..+.
T Consensus 9 ~e~~v~~L~~M--G--F~~~~a~~AL~~t~n~~ve~A~ewL~~~~~d 51 (74)
T 2dag_A 9 DESVIIQLVEM--G--FPMDACRKAVYYTGNSGAEAAMNWVMSHMDD 51 (74)
T ss_dssp CHHHHHHHHHH--S--CCHHHHHHHHHHHTSCCHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHc--C--CCHHHHHHHHHHhCCCCHHHHHHHHHhCCCC
Confidence 35678999998 4 468999999999998 899999999987653
No 160
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=36.48 E-value=18 Score=29.77 Aligned_cols=37 Identities=14% Similarity=0.273 Sum_probs=29.2
Q ss_pred HHHHHHHhhhccccccHHH-HHHhHhhcCCchHHhhhhhhh
Q 001045 455 EKMVQEIRNCLPTWVTQNQ-ILDLISSSGRNIVDAVSNFYE 494 (1176)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 494 (1176)
++.+++|.+| .++.++ .+.+|..++|||..||.-+|.
T Consensus 10 ~~~l~~L~~M---GF~d~~~n~~AL~~~~Gdv~~Ave~L~~ 47 (54)
T 2dah_A 10 QVQLEQLRSM---GFLNREANLQALIATGGDVDAAVEKLRQ 47 (54)
T ss_dssp HHHHHHHHHH---TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHc---CCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3455666554 787766 599999999999999998886
No 161
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=36.33 E-value=20 Score=29.21 Aligned_cols=37 Identities=11% Similarity=0.259 Sum_probs=29.6
Q ss_pred HHHHHHHhhhccccc-cHHHHHHhHhhcCCchHHhhhhhhh
Q 001045 455 EKMVQEIRNCLPTWV-TQNQILDLISSSGRNIVDAVSNFYE 494 (1176)
Q Consensus 455 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (1176)
++.+++|.+| .+ .+++...+|..++||+..|+.-+|.
T Consensus 13 ~~~l~~L~~M---GF~~~~~~~~AL~~t~gn~e~A~e~L~~ 50 (52)
T 2jy5_A 13 QQQLEQLSAM---GFLNREANLQALIATGGDINAAIERLLG 50 (52)
T ss_dssp HHHHHHHHHT---TCCCHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHHc---CCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4555666554 67 8999999999999999999987765
No 162
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=35.54 E-value=20 Score=28.44 Aligned_cols=37 Identities=11% Similarity=0.242 Sum_probs=27.7
Q ss_pred HHHHHHHhhhcccccc-HHHHHHhHhhcCCchHHhhhhhhh
Q 001045 455 EKMVQEIRNCLPTWVT-QNQILDLISSSGRNIVDAVSNFYE 494 (1176)
Q Consensus 455 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 494 (1176)
+..+++|.+ +.++ +++.+..|..++||+..||.-+|.
T Consensus 8 ~~~i~~L~~---MGF~d~~~~~~AL~~~~gnv~~Ave~L~~ 45 (46)
T 2bwb_A 8 EHQLRQLND---MGFFDFDRNVAALRRSGGSVQGALDSLLN 45 (46)
T ss_dssp HHHHHHHHH---TTCCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHHHHHH---cCCCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 344555554 4776 566799999999999999987764
No 163
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10
Probab=35.10 E-value=20 Score=44.87 Aligned_cols=41 Identities=7% Similarity=0.066 Sum_probs=37.3
Q ss_pred ccCCeeEEEEeecCCCCHHHHHHHHHHcCCCEEEEEecCCC
Q 001045 314 SKDAFEIHLVPYSEHSNYDELREYVKFLKPKRVIPTVGMDI 354 (1176)
Q Consensus 314 ~~~~~~v~~i~~SgHAs~~EL~~~V~~lrPk~VIPvHG~~~ 354 (1176)
...+|.+..+-|+|=+|..-|..++..++|+++|.|||...
T Consensus 649 v~~~c~v~fiD~~g~~D~rs~~~i~~~~~Prklilv~g~~~ 689 (717)
T 2i7x_A 649 VQLKCSVVILNLQSLVDQRSASIIWPSLKSRKIVLSAPKQI 689 (717)
T ss_dssp EEECSEEEECCCCCSCCHHHHHHHGGGSCCSEEEECSCGGG
T ss_pred EEEEEEEEEEecCCCCcHHHHHHHHHhcCCcEEEEeCCCHH
Confidence 45678889999999999999999999999999999999654
No 164
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.48 E-value=34 Score=28.87 Aligned_cols=39 Identities=21% Similarity=0.325 Sum_probs=32.0
Q ss_pred HHHHHHHHhhhccccccHHHHHHhHhhcCCchHHhhhhhhhh
Q 001045 454 TEKMVQEIRNCLPTWVTQNQILDLISSSGRNIVDAVSNFYEH 495 (1176)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (1176)
.++.+++|.+ +.+++++...+|..+++|+..|+.-++++
T Consensus 9 ~~~~v~~L~~---MGF~~~~a~~AL~~t~~nve~A~e~L~~~ 47 (63)
T 2dak_A 9 PEDCVTTIVS---MGFSRDQALKALRATNNSLERAVDWIFSH 47 (63)
T ss_dssp CHHHHHHHHH---HTCCHHHHHHHHHHTTSCSHHHHHHHHHH
T ss_pred CHHHHHHHHH---cCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 3466777765 47999999999999999999999888774
No 165
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=33.00 E-value=39 Score=30.31 Aligned_cols=41 Identities=17% Similarity=0.240 Sum_probs=37.0
Q ss_pred HHHHHhhhccccccHHHHHHhHhhcCCchHHhhhhhhhhhh
Q 001045 457 MVQEIRNCLPTWVTQNQILDLISSSGRNIVDAVSNFYEHET 497 (1176)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (1176)
-+.+|++.|+--|++.++.++++++.=|+..|...++..++
T Consensus 37 CLd~iR~VlGdsV~e~~Lv~ailk~dfD~ekALd~vL~~~~ 77 (83)
T 1ufz_A 37 CLDHMREVLGDAVPDDILTEAILKHKFDVQKALSVVLEQDG 77 (83)
T ss_dssp HHHHHHHHTTTTSCHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccCCHHHHHHHHHHhcCCHHHHHHHHHhccc
Confidence 36788999999999999999999999999999999988554
No 166
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=31.38 E-value=19 Score=30.64 Aligned_cols=40 Identities=15% Similarity=0.321 Sum_probs=0.0
Q ss_pred hHhHHHHHhhhcCCcchhhHHHHHHHHh-cccchhhhhccccccC
Q 001045 590 GEEIDQFLKIINGNESLKGYAATLLEKT-KGNVSMALDLYYDNQE 633 (1176)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 633 (1176)
++.|.||+.| + =.|..|...|..| .||++.|++..+++.+
T Consensus 10 ~~~v~~L~~M---G-F~~~~a~~AL~~t~~~nve~A~ewLl~~~~ 50 (64)
T 1whc_A 10 LTALESLIEM---G-FPRGRAEKALALTGNQGIEAAMDWLMEHED 50 (64)
T ss_dssp CCHHHHHHTT---T-CCHHHHHHHHHHHTSCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHc---C-CCHHHHHHHHHHhcCCCHHHHHHHHHhCCC
No 167
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=30.60 E-value=44 Score=27.88 Aligned_cols=37 Identities=11% Similarity=0.242 Sum_probs=28.5
Q ss_pred HHHHHHHhhhcccccc-HHHHHHhHhhcCCchHHhhhhhhh
Q 001045 455 EKMVQEIRNCLPTWVT-QNQILDLISSSGRNIVDAVSNFYE 494 (1176)
Q Consensus 455 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 494 (1176)
+..+++|.+ +.++ +++.+..|..++||+..||.-+|.
T Consensus 18 ~~qi~~L~~---MGF~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 18 EHQLRQLND---MGFFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HHHHHHHHH---HTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHH---cCCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 345555555 4675 667799999999999999988875
No 168
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=29.42 E-value=33 Score=33.03 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=35.5
Q ss_pred hhHhHHHHHhhhcCCcchhhHHHHHHHHhcccchhhhhccccccC
Q 001045 589 YGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYDNQE 633 (1176)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (1176)
.++.|.|++.| | -.+..|+..|..|.||+++|++..++..+
T Consensus 78 ~e~~v~~L~~M--G--F~~~~a~~AL~~~~~~~e~A~e~L~~~~~ 118 (126)
T 2lbc_A 78 PEEIVAIITSM--G--FQRNQAIQALRATNNNLERALDWIFSHPE 118 (126)
T ss_dssp CHHHHHHHHHH--T--SCHHHHHHHHHHHTSCHHHHHHHHHTCCS
T ss_pred CHHHHHHHHHc--C--CCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 45678999987 4 45899999999999999999999998765
No 169
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=28.66 E-value=24 Score=30.17 Aligned_cols=39 Identities=10% Similarity=0.123 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhhccccccHHHHHHhHhhcCCchHHhhhhhh
Q 001045 453 ETEKMVQEIRNCLPTWVTQNQILDLISSSGRNIVDAVSNFY 493 (1176)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (1176)
++.++|++|+.- +.++-.+--..|..++||+++|+-.+-
T Consensus 8 it~~~Vk~LRe~--TGag~~dcKkAL~e~~GDi~~Ai~~Lr 46 (64)
T 2cp9_A 8 SSKELLMKLRRK--TGYSFVNCKKALETCGGDLKQAEIWLH 46 (64)
T ss_dssp CCCHHHHHHHHH--HCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHHH--hCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 355788899886 446667788899999999999998773
No 170
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=27.87 E-value=33 Score=29.96 Aligned_cols=39 Identities=13% Similarity=0.206 Sum_probs=31.9
Q ss_pred HHHHHHHHhhhccccccHHHHHHhHhhcCCchHHhhhhhhhh
Q 001045 454 TEKMVQEIRNCLPTWVTQNQILDLISSSGRNIVDAVSNFYEH 495 (1176)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (1176)
.++.++.|.+| .+++++....|..++||+..||.-+|++
T Consensus 29 ~~~~v~~L~~M---GF~~~~a~~AL~~t~~nve~Ave~L~~~ 67 (73)
T 1wiv_A 29 DQSSVDTLLSF---GFAEDVARKALKASGGDIEKATDWVFNN 67 (73)
T ss_dssp CHHHHHHHHHH---TCCHHHHHHHHHHTTSCHHHHHHHHHHS
T ss_pred CHHHHHHHHHc---CCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 34566666544 7999999999999999999999888774
No 171
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.49 E-value=95 Score=26.52 Aligned_cols=37 Identities=16% Similarity=0.283 Sum_probs=29.6
Q ss_pred HHHHHHhhhccccccHHHHHHhHhhcCCchHHhhhhhhh
Q 001045 456 KMVQEIRNCLPTWVTQNQILDLISSSGRNIVDAVSNFYE 494 (1176)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (1176)
+++.+...+ +-.+.++....|-.+++|++.|++.||+
T Consensus 19 ~~i~qF~~i--Tg~~~~~A~~~Le~~~WdLe~Al~~ff~ 55 (66)
T 2dzl_A 19 VMINQFVLA--AGCAADQAKQLLQAAHWQFETALSTFFQ 55 (66)
T ss_dssp HHHHHHHHH--HCCCHHHHHHHHHTTTTCHHHHHHHHHT
T ss_pred HHHHHHHHH--cCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 445544333 4568888999999999999999999998
No 172
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=26.42 E-value=38 Score=30.42 Aligned_cols=38 Identities=11% Similarity=0.072 Sum_probs=31.9
Q ss_pred HHHHHHHhhhccccccHHHHHHhHhhcCCchHHhhhhhhhh
Q 001045 455 EKMVQEIRNCLPTWVTQNQILDLISSSGRNIVDAVSNFYEH 495 (1176)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (1176)
++.+++|.+| .+++++...+|..++||+.+|+.-+|.+
T Consensus 30 ee~I~~Lv~M---GF~~~~A~~AL~~t~gdve~A~e~L~sh 67 (83)
T 1veg_A 30 QESINQLVYM---GFDTVVAEAALRVFGGNVQLAAQTLAHH 67 (83)
T ss_dssp HHHHHHHHHH---SCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHc---CCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4556666554 7999999999999999999999988873
No 173
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=26.24 E-value=33 Score=29.62 Aligned_cols=35 Identities=9% Similarity=0.065 Sum_probs=27.5
Q ss_pred HHhhhccccccHHHH-HHhHhhcCCchHHhhhhhhh
Q 001045 460 EIRNCLPTWVTQNQI-LDLISSSGRNIVDAVSNFYE 494 (1176)
Q Consensus 460 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 494 (1176)
+|..+..+.++..+. +..|..++|||..||.-+|.
T Consensus 22 ql~qL~~MGF~d~~an~~AL~at~Gnve~Ave~L~~ 57 (67)
T 2dna_A 22 EMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKS 57 (67)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 444455667765555 99999999999999998887
No 174
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.93 E-value=66 Score=28.80 Aligned_cols=39 Identities=13% Similarity=0.208 Sum_probs=32.8
Q ss_pred HHHHHHHHhhhccccccHHHHHHhHhhcCCchHHhhhhhhhh
Q 001045 454 TEKMVQEIRNCLPTWVTQNQILDLISSSGRNIVDAVSNFYEH 495 (1176)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (1176)
.++.+++|.+ +.+++++...+|..+++|+..|+.-+|+|
T Consensus 29 ~e~~i~~L~~---MGF~~~~a~~AL~~t~~nve~A~ewL~~~ 67 (83)
T 2dai_A 29 DEAALRQLTE---MGFPENRATKALQLNHMSVPQAMEWLIEH 67 (83)
T ss_dssp CHHHHHHHHH---HTCCHHHHHHHHHHTTSCHHHHHHHHHHG
T ss_pred CHHHHHHHHH---cCCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 4466777765 48999999999999999999999988875
No 175
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=24.38 E-value=34 Score=27.24 Aligned_cols=31 Identities=6% Similarity=-0.020 Sum_probs=27.5
Q ss_pred ccccccHHHHHHhHhhcCCchHHhhhhhhhh
Q 001045 465 LPTWVTQNQILDLISSSGRNIVDAVSNFYEH 495 (1176)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (1176)
.-+.+++++....+.+.++|+..|++-+|++
T Consensus 12 ~~mGF~~~~a~~Al~a~~~n~e~A~~~Lf~~ 42 (47)
T 1dv0_A 12 KALGFPESLVIQAYFACEKNENLAANFLLSQ 42 (47)
T ss_dssp TTTTCCHHHHHHHHTTTTSCHHHHHHHTTSC
T ss_pred HHcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4458999999999999999999999988873
No 176
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=24.06 E-value=41 Score=29.55 Aligned_cols=37 Identities=11% Similarity=0.229 Sum_probs=29.1
Q ss_pred HHHHHHHhhhcccccc-HHHHHHhHhhcCCchHHhhhhhhh
Q 001045 455 EKMVQEIRNCLPTWVT-QNQILDLISSSGRNIVDAVSNFYE 494 (1176)
Q Consensus 455 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 494 (1176)
++.+++|.+| .++ +++.+..|..++||+..||.-+|.
T Consensus 30 e~qi~qL~eM---GF~dr~~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 30 QQELEELKAL---GFANRDANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp HHHHHHHHHH---TCCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHHHc---CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 3455666554 674 677799999999999999998876
No 177
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.82 E-value=69 Score=28.00 Aligned_cols=40 Identities=10% Similarity=0.111 Sum_probs=32.9
Q ss_pred HHHHHHHHhhhccccccHHHHHHhHhhcCC-chHHhhhhhhhhh
Q 001045 454 TEKMVQEIRNCLPTWVTQNQILDLISSSGR-NIVDAVSNFYEHE 496 (1176)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 496 (1176)
.++.+++|.+ +.+++++...+|..+++ |+..|+.-+|+|-
T Consensus 9 ~e~~v~~L~~---MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~~ 49 (74)
T 2dag_A 9 DESVIIQLVE---MGFPMDACRKAVYYTGNSGAEAAMNWVMSHM 49 (74)
T ss_dssp CHHHHHHHHH---HSCCHHHHHHHHHHHTSCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHH---cCCCHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 4567777766 47999999999999997 7999998888753
No 178
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=23.31 E-value=32 Score=29.24 Aligned_cols=40 Identities=18% Similarity=0.086 Sum_probs=0.0
Q ss_pred hHhHHHHHhhhcCCcchhhHHHHHHHHhcc-cchhhhhccccccC
Q 001045 590 GEEIDQFLKIINGNESLKGYAATLLEKTKG-NVSMALDLYYDNQE 633 (1176)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 633 (1176)
++.|.||++| | =.|..|...|..|.+ |++.|++-.+++.+
T Consensus 10 e~~v~~L~~M---G-F~~~~a~~AL~~t~n~~~e~A~~wL~~h~~ 50 (64)
T 2crn_A 10 PSLLEPLLAM---G-FPVHTALKALAATGRKTAEEALAWLHDHCN 50 (64)
T ss_dssp CSSHHHHHHT---S-CCHHHHHHHHHHHTSCCHHHHHHHHHHHSS
T ss_pred HHHHHHHHHc---C-CCHHHHHHHHHHhCCCCHHHHHHHHHhCCC
No 179
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=22.77 E-value=61 Score=27.14 Aligned_cols=44 Identities=16% Similarity=0.228 Sum_probs=36.8
Q ss_pred hhHhHHHHHhhhcCCcchhhHHHHHHHHhcccchhhhhccccccCC
Q 001045 589 YGEEIDQFLKIINGNESLKGYAATLLEKTKGNVSMALDLYYDNQEG 634 (1176)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (1176)
.++.+.||..|.+. ..+......|++..||+..|++....-+..
T Consensus 9 ~ee~l~~L~emFP~--ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~ 52 (59)
T 1wgl_A 9 SEEDLKAIQDMFPN--MDQEVIRSVLEAQRGNKDAAINSLLQMGEE 52 (59)
T ss_dssp CHHHHHHHHHHCSS--SCHHHHHHHHTTTTTCHHHHHHHHHHSSCC
T ss_pred CHHHHHHHHHHCCC--CCHHHHHHHHHHcCCCHHHHHHHHHcCcCC
Confidence 46788899998664 688999999999999999999988775543
No 180
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.26 E-value=78 Score=27.24 Aligned_cols=41 Identities=7% Similarity=0.277 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhhccccccHHHHHHhHhhcCCchHHhhhhhhh
Q 001045 453 ETEKMVQEIRNCLPTWVTQNQILDLISSSGRNIVDAVSNFYE 494 (1176)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (1176)
..+..++.|..+.|. +.++-|...|.+++||+..|+..+.+
T Consensus 17 ~~~~~v~~L~~MFP~-lD~~vI~~vL~a~~G~vd~aId~LL~ 57 (67)
T 2dhy_A 17 EFNQAMDDFKTMFPN-MDYDIIECVLRANSGAVDATIDQLLQ 57 (67)
T ss_dssp CSHHHHHHHHHHCSS-SCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCC-CCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 466888999999997 56677999999999999999988765
No 181
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.19 E-value=84 Score=28.26 Aligned_cols=41 Identities=12% Similarity=0.292 Sum_probs=33.7
Q ss_pred HHHHHHHhhhccccccHHHHHHhHhhcCCchHHhhhhhhhhhhh
Q 001045 455 EKMVQEIRNCLPTWVTQNQILDLISSSGRNIVDAVSNFYEHETQ 498 (1176)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (1176)
++.+++|.++ .+++++...+|...++|+..|+.-+|+|--|
T Consensus 22 ~~~I~qL~~M---GF~~~~a~~AL~~~n~n~e~A~ewL~~h~~D 62 (85)
T 2dkl_A 22 SRLIKQLTDM---GFPREPAEEALKSNNMNLDQAMSALLEKKVD 62 (85)
T ss_dssp HHHHHHHHHH---TCCHHHHHHHHHHTTSCHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHc---CCCHHHHHHHHHHcCCCHHHHHHHHHHCcCC
Confidence 5667777664 8999999999999999999999998885544
No 182
>1vjn_A Zn-dependent hydrolase of metallo-beta-lactamase superfamily TM0207; metallo-hydrolase/oxidoreductase fold, structural genomics; 2.00A {Thermotoga maritima} SCOP: d.157.1.4
Probab=20.54 E-value=63 Score=33.78 Aligned_cols=28 Identities=21% Similarity=0.212 Sum_probs=25.4
Q ss_pred cCCCCHHHHHHHHHHcCCCEEEEEecCC
Q 001045 326 SEHSNYDELREYVKFLKPKRVIPTVGMD 353 (1176)
Q Consensus 326 SgHAs~~EL~~~V~~lrPk~VIPvHG~~ 353 (1176)
.+|.+.++..++++.++|+.+||+|=..
T Consensus 149 ~~h~~~~~a~~~~~~~~~k~vi~~H~~~ 176 (220)
T 1vjn_A 149 TYTIGPKEAKEVADLLNAKVIIPMHYKT 176 (220)
T ss_dssp SSSCCHHHHHHHHHHTTCSEEEEESCCC
T ss_pred cCcCCHHHHHHHHHhcCCCEEEEEeccc
Confidence 3599999999999999999999999744
No 183
>3rpc_A Possible metal-dependent hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.49A {Veillonella parvula}
Probab=20.23 E-value=63 Score=34.50 Aligned_cols=27 Identities=11% Similarity=-0.045 Sum_probs=25.1
Q ss_pred cCCCCHHHHHHHHHHcCCCEEEEEecC
Q 001045 326 SEHSNYDELREYVKFLKPKRVIPTVGM 352 (1176)
Q Consensus 326 SgHAs~~EL~~~V~~lrPk~VIPvHG~ 352 (1176)
..|.+.+|..++++.++|+++||+|-.
T Consensus 202 ~~hm~~~ea~~~~~~l~~~~vi~~H~~ 228 (264)
T 3rpc_A 202 SIIMGTKDIGRMVVRKPEAKIIAVHMD 228 (264)
T ss_dssp CSSCCHHHHHHHHHHCTTSEEEEESCS
T ss_pred CcccCHHHHHHHHHhCCcCeEEEEccc
Confidence 469999999999999999999999974
No 184
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=20.16 E-value=71 Score=26.10 Aligned_cols=33 Identities=12% Similarity=0.024 Sum_probs=27.9
Q ss_pred hhhccccccHHHHHHhHhhcCCchHHhhhhhhh
Q 001045 462 RNCLPTWVTQNQILDLISSSGRNIVDAVSNFYE 494 (1176)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (1176)
..+.-..+|+++...+|..+.+|+.-|.+-..|
T Consensus 16 a~Lm~mGFsr~~ai~AL~~a~nnve~AaniLle 48 (52)
T 2ooa_A 16 AKLMGEGYAFEEVKRALEIAQNNVEVARSILRE 48 (52)
T ss_dssp HHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 334566899999999999999999999887754
Done!